LiteFold/GO huggingface dataset:
methyl-CpNpG binding (GO:0010428)
Namespace: molecular_function
Definition: Binding to a methylated cytosine/unspecified/guanine trinucleotide.
methyl-CpNpN binding (GO:0010429)
Namespace: molecular_function
Definition: Binding to a methylated cytosine/unspecified/unspecified trinucleotide.
bract development (GO:0010432)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the bract over time, from its formation to the mature structure. A bract is a leaf, usually different in form from the foliage leaves, subtending a flower or inflorescence.
bract morphogenesis (GO:0010433)
Namespace: biological_process
Definition: The process in which the anatomical structure of a bract are generated and organized. A bract is a leaf, usually different in form from the foliage leaves, subtending a flower or inflorescence.
bract formation (GO:0010434)
Namespace: biological_process
Definition: The process that gives rise to a bract. This process pertains to the initial formation of a structure from unspecified parts. A bract is a leaf, usually different in form from the foliage leaves, subtending a flower or inflorescence.
obsolete 3-oxo-2-(2'-pentenyl)cyclopentane-1-octanoic acid CoA ligase activity (GO:0010435)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: ATP + 3-oxo-2-(2'-pentenyl)-cyclopentane-1-octanoic acid + coenzyme A = AMP + diphosphate + 3-oxo-2-(2'-pentenyl)-cyclopentane-1-octanoyl-CoA + H+. 3-oxo-2-(2'-pentenyl)-cyclopentane-1-octanoic acid is also known as OPC-8:0.
Synonyms: 3-oxo-2-(2'-[Z]-pentenyl)cyclopentane-1-octanoate CoA ligase activity; 3-oxo-2-(2'-pentenyl)cyclopentane-1-octanoic acid (OPC-8:0) CoA ligase activity; OPC-8:0 CoA ligase activity
Comment: This term was obsoleted because it represents a specific substrate.
carotenoid dioxygenase activity (GO:0010436)
Namespace: molecular_function
Definition: Catalysis of the oxidative cleavage of carotenoids.
Synonyms: carotenoid-cleaving dioxygenase
9,10 (9', 10')-carotenoid-cleaving dioxygenase activity (GO:0010437)
Namespace: molecular_function
Definition: Catalysis of the oxidative cleavage of carotenoids at the (9, 10) and/or (9', 10') double bond.
cellular response to sulfur starvation (GO:0010438)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of sulfur.
regulation of glucosinolate biosynthetic process (GO:0010439)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of glucosinolates, substituted thioglucosides found in rapeseed products and related cruciferae.
stomatal lineage progression (GO:0010440)
Namespace: biological_process
Definition: The process in which an unspecialized epidermal cell progresses through a series of divisions that culminate in the production of a stomatal complex.
guard cell development (GO:0010441)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the guard cell over time, from its formation to the mature structure.
guard cell morphogenesis (GO:0010442)
Namespace: biological_process
Definition: Generation and organization of the polarized cell that is capable of turgor driven movement.
Synonyms: guard cell morphogenesis during differentiation
meristemoid mother cell division (GO:0010443)
Namespace: biological_process
Definition: The asymmetric cell division by which a meristemoid mother cells (MMC) give rise to a meristemoid and another cell. The other cell may itself become a MMC or may generate an epidermal cell. Any cell that undergoes this type of division is a MMC.
Synonyms: meristemoid division
guard mother cell differentiation (GO:0010444)
Namespace: biological_process
Definition: The process in which a meristemoid acquires the specialized features of a guard mother cell.
nuclear dicing body (GO:0010445)
Namespace: cellular_component
Definition: A small round nuclear body, measuring 0.2-0.8 microns in diameter that is diffusely distributed throughout the nucleoplasm. Several proteins known to be involved in miRNA processing have been localized to these structures. D-bodies are thought to be involved in primary-miRNA processing and/or storage/assembly of miRNA processing complexes.
Synonyms: D body
response to acidic pH (GO:0010447)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pH stimulus with pH < 7. pH is a measure of the acidity or basicity of an aqueous solution.
Synonyms: response to acidity
Comment: This term should be used to annotate instances where a cell or organism is responding to a chemical that is playing the role of an acid (e.g. proton donor) and therefore lowering the pH. If instead you wish to describe a response to a specific acid as a chemical, such as the anion portion of glutamate, please annotate to the appropriate child of GO:0001101 'response to acid chemical'.
root meristem growth (GO:0010449)
Namespace: biological_process
Definition: The increase in size or mass of a root meristem, a population of undifferentiated cells in a plant root which maintains a continuous balance between the production of stem cells and the incorporation of their derivatives into the growth of the root.
inflorescence meristem growth (GO:0010450)
Namespace: biological_process
Definition: The increase in size or mass of an inflorescence meristem, a population of undifferentiated cells in a plant shoot which produces small leaves and then floral meristems, which will give rise to flowers.
floral meristem growth (GO:0010451)
Namespace: biological_process
Definition: The increase in size or mass of a floral meristem, a population of undifferentiated cells in a plant that gives rise to a flower.
obsolete histone H3-K36 methylation (GO:0010452)
Namespace: biological_process
Definition: OBSOLETE. The modification of histone H3 by addition of one or more methyl groups to lysine at position 36 of the histone.
Synonyms: histone H3 K36 methylation; histone H3K36me; histone lysine H3 K36 methylation
Comment: This term was obsoleted because it represents a molecular function.
regulation of cell fate commitment (GO:0010453)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of cell fate commitment. Cell fate commitment is the commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field.
negative regulation of cell fate commitment (GO:0010454)
Namespace: biological_process
Definition: Any process that stops, prevents or reduces the frequency or rate of cell fate commitment. Cell fate commitment is the commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field.
positive regulation of cell fate commitment (GO:0010455)
Namespace: biological_process
Definition: Any process that activates, maintains or increases the frequency or rate of cell fate commitment. Cell fate commitment is the commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field.
centriole-centriole cohesion (GO:0010457)
Namespace: biological_process
Definition: The cell cycle process in which the two centrioles within a centrosome remain tightly paired.
exit from mitosis (GO:0010458)
Namespace: biological_process
Definition: The cell cycle transition where a cell leaves M phase and enters a new G1 phase. M phase is the part of the mitotic cell cycle during which mitosis and cytokinesis take place.
Synonyms: exit from mitotic division; mitotic exit
negative regulation of heart rate (GO:0010459)
Namespace: biological_process
Definition: Any process that stops, prevents or reduces the frequency or rate of heart contraction.
positive regulation of heart rate (GO:0010460)
Namespace: biological_process
Definition: Any process that activates or increases the frequency or rate of heart contraction.
light-activated monoatomic ion channel activity (GO:0010461)
Namespace: molecular_function
Definition: Enables the transmembrane transfer of a monoatomic ion by a channel that opens in response to a light stimulus.
obsolete regulation of light-activated voltage-gated calcium channel activity (GO:0010462)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of light-activated voltage-gated calcium channel activity.
Comment: This term was obsoleted because it represents a molecular function.
mesenchymal cell proliferation (GO:0010463)
Namespace: biological_process
Definition: The multiplication or reproduction of cells, resulting in the expansion of a mesenchymal cell population. A mesenchymal cell is a cell that normally gives rise to other cells that are organized as three-dimensional masses, rather than sheets.
regulation of mesenchymal cell proliferation (GO:0010464)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of mesenchymal cell proliferation. A mesenchymal cell is a cell that normally gives rise to other cells that are organized as three-dimensional masses, rather than sheets.
nerve growth factor receptor activity (GO:0010465)
Namespace: molecular_function
Definition: Combining with nerve growth factor (NGF), to prevent apoptosis in neurons and promote nerve growth, or to initiate a change in cell activity.
Synonyms: beta-nerve growth factor receptor activity; NGF receptor activity
negative regulation of peptidase activity (GO:0010466)
Namespace: biological_process
Definition: Any process that stops or reduces the rate of peptidase activity, the hydrolysis of peptide bonds within proteins.
gene expression (GO:0010467)
Namespace: biological_process
Definition: The process in which a gene's sequence is converted into a mature gene product (protein or RNA). This includes the production of an RNA transcript and its processing, as well as translation and maturation for protein-coding genes.
regulation of gene expression (GO:0010468)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product (protein or RNA).
Synonyms: gene regulation; regulation of gene product expression; regulation of protein expression
Comment: This class covers any process that regulates the rate of production of a mature gene product, and so includes processes that regulate that rate by regulating the level, stability or availability of intermediates in the process of gene expression. For example, it covers any process that regulates the level, stability or availability of mRNA or circRNA for translation and thereby regulates the rate of production of the encoded protein via translation.
regulation of signaling receptor activity (GO:0010469)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of a signaling receptor activity. Receptor activity is when a molecule combines with an extracellular or intracellular messenger to initiate a change in cell activity.
Synonyms: regulation of receptor activity; regulation of signalling receptor activity
regulation of gastrulation (GO:0010470)
Namespace: biological_process
Definition: Any process that modulates the rate or extent of gastrulation. Gastrulation is the complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals.
GDP-galactose:mannose-1-phosphate guanylyltransferase activity (GO:0010471)
Namespace: molecular_function
Definition: Catalysis of the reaction: GDP-beta-L-galactose + alpha-D-mannose 1-phosphate = GDP-alpha-D-mannose + beta-L-galactose-1-phosphate.
Synonyms: GDP-L-galactose phosphorylase activity; GDP-L-galactose:mannose-1-phosphate guanylyltransferase activity
GDP-galactose:glucose-1-phosphate guanylyltransferase activity (GO:0010472)
Namespace: molecular_function
Definition: Catalysis of the reaction: GDP-beta-L-galactose + alpha-D-glucose 1-phosphate = beta-L-galactose-1-phosphate + GDP-alpha-D-glucose.
Synonyms: GDP-L-galactose phosphorylase activity; GDP-L-galactose:glucose-1-phosphate guanylyltransferase activity
GDP-galactose:myoinositol-1-phosphate guanylyltransferase activity (GO:0010473)
Namespace: molecular_function
Definition: Catalysis of the reaction: GDP-L-galactose + myo-inositol 1-phosphate = alpha-L-galactose-1-phosphate + GDP-myoinositol.
gibberellin mediated signaling pathway (GO:0010476)
Namespace: biological_process
Definition: The series of molecular signals generated as a consequence of gibberellin stimulus.
Synonyms: gibberellin-mediated signalling
response to sulfur dioxide (GO:0010477)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sulfur dioxide (SO2) stimulus.
stele development (GO:0010479)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the stele over time, from its formation to the mature structure. The stele is the central column of primary vascular tissue in the root and any tissue that it surrounds.
microsporocyte differentiation (GO:0010480)
Namespace: biological_process
Definition: The process aimed at the progression of a microsporocyte cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. A microsporocyte is a diploid (2n) cell that undergoes meiosis and forms four haploid (1n) microspores; also called microspore mother cell and, in seed plants, pollen mother cell.
Synonyms: pollen mother cell differentiation
epidermal cell division (GO:0010481)
Namespace: biological_process
Definition: Any process resulting in the physical partitioning and separation of an epidermal cell, any of the cells making up the epidermis, into daughter cells.
Synonyms: hypodermal cell division
regulation of epidermal cell division (GO:0010482)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the physical partitioning and separation of an epidermal cell into daughter cells. An epidermal cell is any of the cells that make up the epidermis.
Synonyms: regulation of hypodermal cell division
pollen tube reception (GO:0010483)
Namespace: biological_process
Definition: An interaction between the pollen tube, part of the male gametophyte, and the female gametophyte (typically the synergid cells), that results in the arrest of pollen tube growth, rupture of the pollen tube and the release of the sperm cells.
histone H3 acetyltransferase activity (GO:0010484)
Namespace: molecular_function
Definition: Catalysis of the reaction: acetyl-CoA + histone H3 = CoA + acetyl-histone H3.
Synonyms: H3 histone acetylase activity; H3 histone acetyltransferase activity
histone H4 acetyltransferase activity (GO:0010485)
Namespace: molecular_function
Definition: Catalysis of the reaction: acetyl-CoA + histone H4 = CoA + acetyl-histone H4.
Synonyms: H4 histone acetylase activity; H4 histone acetyltransferase activity
manganese:proton antiporter activity (GO:0010486)
Namespace: molecular_function
Definition: Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Mn2+(in) + H+(out) = Mn2+(out) + H+(in).
Synonyms: manganese:hydrogen antiporter activity
thermospermine synthase activity (GO:0010487)
Namespace: molecular_function
Definition: Catalysis of the reaction: S-adenosyl-L-methioninamine + spermidine = S-methyl-5'-thioadenosine + thermospermine + H+.
UDP-galactose:N-glycan beta-1,3-galactosyltransferase activity (GO:0010488)
Namespace: molecular_function
Definition: Catalysis of the reaction: UDP-galactose + N-glycan = galactose-beta-1,3-N-glycan + UDP.
UDP-4-keto-6-deoxy-glucose-3,5-epimerase activity (GO:0010489)
Namespace: molecular_function
Definition: Catalysis of the reaction: UDP-4-keto-6-deoxyglucose = UDP-4-keto-rhamnose.
UDP-4-keto-rhamnose-4-keto-reductase activity (GO:0010490)
Namespace: molecular_function
Definition: Catalysis of the reaction: UDP-4-keto-rhamnose + NADPH = UDP-rhamnose + NADP+.
UTP:arabinose-1-phosphate uridylyltransferase activity (GO:0010491)
Namespace: molecular_function
Definition: Catalysis of the reaction: alpha-L-arabinose 1-phosphate + UTP = UDP-L-arabinose + diphosphate.
Lewis a epitope biosynthetic process (GO:0010493)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of a Lewis a epitope, a trisaccharide (Fuc-alpha-(1->4)[Gal-beta-(1->3)]GlcNAc) characteristic of plant protein N-linked oligosaccharides.
Synonyms: LE A biosynthetic process
cytoplasmic stress granule (GO:0010494)
Namespace: cellular_component
Definition: A dense aggregation in the cytosol composed of proteins and RNAs that appear when the cell is under stress.
Synonyms: cytoplasmic mRNP granule; stress granule
plasmodesmata-mediated intercellular transport (GO:0010497)
Namespace: biological_process
Definition: The movement of substances between cells via plasmodesmata. Plasmodesmata is a fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell.
Synonyms: plasmodesma-mediated cell-to-cell transport; plasmodesma-mediated intercellular transport; plasmodesmata-mediated cell-to-cell transport; single organism plasmodesmata-mediated intercellular transport; single-organism plasmodesmata-mediated intercellular transport
proteasomal protein catabolic process (GO:0010498)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds that is mediated by the proteasome.
Synonyms: proteasome-mediated protein catabolic process; proteasome-mediated protein catabolism
proteasomal ubiquitin-independent protein catabolic process (GO:0010499)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds that is mediated by the proteasome but do not involve ubiquitin.
transmitting tissue development (GO:0010500)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the transmitting tract over time, from its formation to the mature structure. The transmitting tissue is the tissue in the style of a carpel through which the pollen tube grows; it connects the stigma and the inside of ovary.
obsolete RNA secondary structure unwinding (GO:0010501)
Namespace: biological_process
Definition: OBSOLETE. The process in which a secondary structure of RNA are broken or 'melted'.
Synonyms: RNA duplex unwinding
Comment: The reason for obsoletion is that the term represents a molecular function.
obsolete negative regulation of cell cycle arrest in response to nitrogen starvation (GO:0010503)
Namespace: biological_process
Definition: OBSOLETE. Any process that stops, prevents or reduces the frequency or rate of cell cycle arrest in response to nitrogen starvation.
Comment: This term was made obsolete because it is superfluous, as only the more specific 'mitotic G1 cell cycle arrest in response to nitrogen starvation' has been observed.
obsolete regulation of cell cycle arrest in response to nitrogen starvation (GO:0010504)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of cell cycle arrest in response to nitrogen starvation.
Comment: This term was made obsolete because it is superfluous, as only the more specific 'mitotic G1 cell cycle arrest in response to nitrogen starvation' has been observed.
obsolete positive regulation of cell cycle arrest in response to nitrogen starvation (GO:0010505)
Namespace: biological_process
Definition: OBSOLETE. Any process that increases the frequency or rate of cell cycle arrest in response to nitrogen starvation.
Comment: This term was made obsolete because it is superfluous, as only the more specific 'mitotic G1 cell cycle arrest in response to nitrogen starvation' has been observed.
regulation of autophagy (GO:0010506)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of autophagy. Autophagy is the process in which cells digest parts of their own cytoplasm.
negative regulation of autophagy (GO:0010507)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of autophagy. Autophagy is the process in which cells digest parts of their own cytoplasm.
positive regulation of autophagy (GO:0010508)
Namespace: biological_process
Definition: Any process that activates, maintains or increases the rate of autophagy. Autophagy is the process in which cells digest parts of their own cytoplasm.
intracellular polyamine homeostasis (GO:0010509)
Namespace: biological_process
Definition: A homeostatic process involved in the maintenance of a steady state level of polyamine within a cell.
Synonyms: polyamine homeostasis
regulation of pyruvate decarboxylation to acetyl-CoA (GO:0010510)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of acetyl-CoA from pyruvate. In most organisms, this pathway links glycolysis to the TCA cycle, by a series of three reactions carried out by a multisubunit complex called the 'pyruvate dehydrogenase complex', even though pyruvate dehydrogenase activity describes only one of those reactions.
Synonyms: regulation of acetyl-CoA biosynthetic process from pyruvate
regulation of phosphatidylinositol biosynthetic process (GO:0010511)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of phosphatidylinositol.
negative regulation of phosphatidylinositol biosynthetic process (GO:0010512)
Namespace: biological_process
Definition: Any process that decreases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of phosphatidylinositol.
positive regulation of phosphatidylinositol biosynthetic process (GO:0010513)
Namespace: biological_process
Definition: Any process that increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of phosphatidylinositol.
induction of conjugation with cellular fusion (GO:0010514)
Namespace: biological_process
Definition: The process in which a cell initiates conjugation with cellular fusion. Conjugation with cellular fusion is the process that results in the union of cellular and genetic information from compatible mating types.
negative regulation of induction of conjugation with cellular fusion (GO:0010515)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency or rate of initiation of conjugation with cellular fusion.
negative regulation of cellular response to nitrogen starvation (GO:0010516)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of a cellular response to nitrogen starvation.
regulation of phospholipase activity (GO:0010517)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of phospholipase activity, the hydrolysis of a phospholipid.