LiteFold/GO huggingface dataset:
obsolete cresol biosynthetic process (GO:0046198)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of cresol, a mixture of the aromatic alcohol isoforms o-, p-, and m-cresol, which is obtained from coal tar or petroleum. The isomers are used as disinfectants, textile scouring agents, surfactants and as intermediates in the manufacture of salicylaldehyde, coumarin, and herbicides as well as being a major component of creosote.
Synonyms: cresol anabolism; cresol biosynthesis; cresol biosynthetic process; cresol formation; cresol synthesis
Comment: This term was made obsolete because cresol is not synthesized by living organisms, and GO does not cover non-biological processes.
cresol catabolic process (GO:0046199)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of cresol, a mixture of the aromatic alcohol isoforms o-, p-, and m-cresol, which is obtained from coal tar or petroleum. The isomers are used as disinfectants, textile scouring agents, surfactants and as intermediates in the manufacture of salicylaldehyde, coumarin, and herbicides as well as being a major component of creosote.
Synonyms: cresol breakdown; cresol catabolism; cresol degradation
obsolete m-cresol biosynthetic process (GO:0046200)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of m-cresol (3-hydroxytoluene), the meta-isoform of cresol.
Synonyms: m-cresol anabolism; m-cresol biosynthesis; m-cresol biosynthetic process; m-cresol formation; m-cresol synthesis
Comment: This term was made obsolete because m-cresol is not synthesized by living organisms and GO does not cover non-biological processes.
cyanate biosynthetic process (GO:0046201)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of cyanate, NCO-, the anion of cyanic acid.
Synonyms: cyanate anabolism; cyanate biosynthesis; cyanate formation; cyanate synthesis
cyanide biosynthetic process (GO:0046202)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of cyanide, NC-, the anion of hydrocyanic acid. Cyanide is a potent inhibitor of respiration.
Synonyms: cyanide anabolism; cyanide biosynthesis; cyanide formation; cyanide synthesis
spermidine catabolic process (GO:0046203)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of spermidine, N-(3-aminopropyl)-1,4-diaminobutane.
Synonyms: spermidine breakdown; spermidine catabolism; spermidine degradation
nor-spermidine metabolic process (GO:0046204)
Namespace: biological_process
Definition: The chemical reactions and pathways involving nor-spermidine, a compound related to spermidine, N-(3-aminopropyl)-1,4-diaminobutane.
Synonyms: nor-spermidine metabolism
nor-spermidine catabolic process (GO:0046205)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of nor-spermidine, a compound related to spermidine, N-(3-aminopropyl)-1,4-diaminobutane.
Synonyms: nor-spermidine breakdown; nor-spermidine catabolism; nor-spermidine degradation
trypanothione metabolic process (GO:0046206)
Namespace: biological_process
Definition: The chemical reactions and pathways involving trypanothione (N1,N6,-bis(glutathionyl)spermidine), an essential redox intermediate in intracellular thiol redox regulation which also plays a role in protecting against oxidative stress.
Synonyms: trypanothione metabolism
spermine catabolic process (GO:0046208)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of spermine, a polybasic amine found in human sperm, in ribosomes and in some viruses and involved in nucleic acid packaging.
Synonyms: spermine breakdown; spermine catabolism; spermine degradation
nitric oxide catabolic process (GO:0046210)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of nitric oxide, nitrogen monoxide (NO), a colorless gas only slightly soluble in water.
Synonyms: nitric oxide breakdown; nitric oxide catabolism; nitric oxide degradation
(+)-camphor biosynthetic process (GO:0046211)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of (+)-camphor, a bicyclic monoterpene ketone. Consists of the three reactions: (2E)-geranyl diphosphate = (2S,4R)-bornyl diphosphate, which is converted to (1R,2S,4R)-borneol + diphosphate, and then to (1R,4R)-camphor.
Synonyms: (+)-camphor anabolism; (+)-camphor biosynthesis; (+)-camphor formation; (+)-camphor synthesis
obsolete methyl ethyl ketone biosynthetic process (GO:0046212)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of methyl ethyl ketone, a clear, colorless liquid with a fragrant, mint-like odor. It is used as a solvent and in making plastics, textiles and paints.
Synonyms: methyl ethyl ketone anabolism; methyl ethyl ketone biosynthesis; methyl ethyl ketone biosynthetic process; methyl ethyl ketone formation; methyl ethyl ketone synthesis
Comment: This term was made obsolete because methyl ethyl ketone is not synthesized by living organisms and GO does not cover non-biological processes.
methyl ethyl ketone catabolic process (GO:0046213)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of methyl ethyl ketone, a clear, colorless liquid with a fragrant, mint-like odor.
Synonyms: methyl ethyl ketone breakdown; methyl ethyl ketone catabolism; methyl ethyl ketone degradation
enterobactin catabolic process (GO:0046214)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of enterobactin, a catechol-derived siderochrome of Enterobacteria; enterobactin (N',N',N''-(2,6,10-trioxo-1,5,9-triacyclodecane-3,7,11-triyl)tris(2,3-dihydroxy)benzamide) is a self-triester of 2,3-dihydroxy-N-benzoyl-L-serine and a product of the shikimate pathway.
Synonyms: enterobactin breakdown; enterobactin catabolism; enterobactin degradation
siderophore catabolic process (GO:0046215)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of siderophores, low molecular weight Fe(III)-chelating substances made by aerobic or facultatively anaerobic bacteria, especially when growing under iron deficient conditions. The complexes of Fe(3+)-siderophores have very high stability constants and are taken up by specific transport systems by microorganisms; the subsequent release of iron requires enzymatic action.
Synonyms: siderochrome catabolism; siderophore breakdown; siderophore catabolism; siderophore degradation
indole phytoalexin catabolic process (GO:0046216)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of indole phytoalexins, any indole compound produced by plants as part of their defense response.
Synonyms: indole phytoalexin breakdown; indole phytoalexin catabolism; indole phytoalexin degradation
obsolete indole phytoalexin metabolic process (GO:0046217)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving indole phytoalexins, any indole compound produced by plants as part of their defense response.
Synonyms: indole phytoalexin metabolism
Comment: This term was obsoleted because it is an unnecessary grouping term.
obsolete indolalkylamine catabolic process (GO:0046218)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the breakdown of indolalkylamines, indole or indole derivatives containing a primary, secondary, or tertiary amine group.
Synonyms: indolalkylamine breakdown; indolalkylamine catabolism; indolalkylamine degradation
Comment: This term was obsoleted because it is an unnecessary grouping class.
indolalkylamine biosynthetic process (GO:0046219)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of indolalkylamines, indole or indole derivatives containing a primary, secondary, or tertiary amine group.
Synonyms: indolalkylamine anabolism; indolalkylamine biosynthesis; indolalkylamine formation; indolalkylamine synthesis
pyridine biosynthetic process (GO:0046220)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of pyridine, a nitrogenous base (C5H5N) obtained from the distillation of bone oil or coal tar, and by the decomposition of certain alkaloids, as a colorless liquid with a peculiar pungent odor.
Synonyms: pyridine anabolism; pyridine biosynthesis; pyridine formation; pyridine synthesis
pyridine catabolic process (GO:0046221)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of pyridine, a nitrogenous base (C5H5N) obtained from the distillation of bone oil or coal tar, and by the decomposition of certain alkaloids, as a colorless liquid with a peculiar pungent odor.
Synonyms: pyridine breakdown; pyridine catabolism; pyridine degradation
aflatoxin catabolic process (GO:0046223)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of aflatoxin, a fungal metabolite found as a contaminant in moldy grains that induces liver cancer. Aflatoxin induces a G to T transversion at codon 249 of p53, leading to its inactivation. Aflatoxin is converted to a chemical carcinogen by P450.
Synonyms: aflatoxin breakdown; aflatoxin catabolism; aflatoxin degradation
bacteriocin metabolic process (GO:0046224)
Namespace: biological_process
Definition: The chemical reactions and pathways involving bacteriocins, any of a heterogeneous group of polypeptide antibiotics that are secreted by certain bacterial strains and are able to kill cells of other susceptible (frequently related) strains after adsorption at specific receptors on the cell surface. They include the colicins, and their mechanisms of action vary.
Synonyms: bacteriocin metabolism
bacteriocin catabolic process (GO:0046225)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of a bacteriocin, any of a heterogeneous group of polypeptide antibiotics that are secreted by certain bacterial strains and are able to kill cells of other susceptible (frequently related) strains after adsorption at specific receptors on the cell surface. They include the colicins, and their mechanisms of action vary.
Synonyms: bacteriocin breakdown; bacteriocin catabolism; bacteriocin degradation
coumarin catabolic process (GO:0046226)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of coumarins, compounds derived from the phenylacrylic skeleton of cinnamic acids.
Synonyms: coumarin breakdown; coumarin catabolism; coumarin degradation
obsolete 2,4,5-trichlorophenoxyacetic acid biosynthetic process (GO:0046227)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of 2,4,5-trichlorophenoxyacetic acid, a chlorinated aromatic compound widely used as a herbicide.
Synonyms: 2,4,5-trichlorophenoxyacetic acid anabolism; 2,4,5-trichlorophenoxyacetic acid biosynthesis; 2,4,5-trichlorophenoxyacetic acid biosynthetic process; 2,4,5-trichlorophenoxyacetic acid formation; 2,4,5-trichlorophenoxyacetic acid synthesis
Comment: This term was made obsolete because 2,4,5-trichlorophenoxyacetic acid is not synthesized by living organisms and GO does not cover non-biological processes.
2,4,5-trichlorophenoxyacetic acid catabolic process (GO:0046228)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of 2,4,5-trichlorophenoxyacetic acid, a chlorinated aromatic compound widely used as a herbicide.
Synonyms: 2,4,5-trichlorophenoxyacetic acid breakdown; 2,4,5-trichlorophenoxyacetic acid catabolism; 2,4,5-trichlorophenoxyacetic acid degradation
2-aminobenzenesulfonate catabolic process (GO:0046230)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of 2-aminobenzenesulfonate, an aromatic sulfonate used in organic synthesis and in the manufacture of various dyes and medicines.
Synonyms: 2-aminobenzenesulfonate breakdown; 2-aminobenzenesulfonate catabolism; 2-aminobenzenesulfonate degradation; 2-aminobenzenesulphonate catabolic process; 2-aminobenzenesulphonate catabolism
obsolete carbazole biosynthetic process (GO:0046231)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of carbazole, a heterocyclic aromatic compound containing a dibenzopyrrole system that is produced during coal gasification and is present in cigarette smoke. Coal tar produced at high temperature contains an average of 1.5% carbazole. It is used widely in synthesis of dyes, pharmaceuticals, and plastics and is a suspected carcinogen.
Synonyms: carbazole anabolism; carbazole biosynthesis; carbazole biosynthetic process; carbazole formation; carbazole synthesis
Comment: This term was made obsolete because carbazole is not synthesized by living organisms and GO does not cover non-biological processes.
carbazole catabolic process (GO:0046232)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of carbazole, a heterocyclic aromatic compound containing a dibenzopyrrole system that is produced during coal gasification and is present in cigarette smoke. Coal tar produced at high temperature contains an average of 1.5% carbazole. It is used widely in synthesis of dyes, pharmaceuticals, and plastics and is a suspected carcinogen.
Synonyms: carbazole breakdown; carbazole catabolism; carbazole degradation
obsolete fluorene biosynthetic process (GO:0046234)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of fluorene, a tricyclic polycyclic aromatic hydrocarbon containing a five-membered ring. It is a major component of fossil fuels and their derivatives and is also a by-product of coal-conversion and energy-related industries. It is commonly found in vehicle exhaust emissions, crude oils, motor oils, coal and oil combustion products, waste incineration, and industrial effluents.
Synonyms: fluorene anabolism; fluorene biosynthesis; fluorene biosynthetic process; fluorene formation; fluorene synthesis
Comment: This term was made obsolete because fluorene is not synthesized by living organisms and GO does not cover non-biological processes.
obsolete gallate biosynthetic process (GO:0046235)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of gallate, the anion of gallic acid (3,4,5-trihydroxybenzoic acid).
Synonyms: gallate anabolism; gallate biosynthesis; gallate formation; gallate synthesis; gallic acid biosynthesis; gallic acid biosynthetic process
Comment: This term was obsoleted because there is no evidence that this process exists.
mandelate biosynthetic process (GO:0046236)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of mandelate, the anion of mandelic acid. Mandelic acid (alpha-hydroxybenzeneacetic acid) is an 8-carbon alpha-hydroxy acid (AHA) that is used in organic chemistry and as a urinary antiseptic.
Synonyms: mandelate anabolism; mandelate biosynthesis; mandelate formation; mandelate synthesis
obsolete phenanthrene biosynthetic process (GO:0046237)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of phenanthrene, a tricyclic aromatic hydrocarbon.
Synonyms: phenanthrene anabolism; phenanthrene biosynthesis; phenanthrene biosynthetic process; phenanthrene formation; phenanthrene synthesis
Comment: This term was made obsolete because phenanthrene is not synthesized by living organisms, and GO does not cover non-biological processes.
obsolete phthalate biosynthetic process (GO:0046238)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of phthalate, any ester or salt of phthalic acid.
Synonyms: phthalate anabolism; phthalate biosynthesis; phthalate biosynthetic process; phthalate formation; phthalate synthesis
Comment: This term was made obsolete because phthalates are not synthesized by living organisms, and GO does not cover non-biological processes.
phthalate catabolic process (GO:0046239)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of phthalate, the anion of phthalic acid.
Synonyms: phthalate breakdown; phthalate catabolism; phthalate degradation
obsolete xylene biosynthetic process (GO:0046240)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of xylene, a mixture of three colorless, aromatic hydrocarbon liquids, ortho-, meta- and para-xylene.
Synonyms: xylene anabolism; xylene biosynthesis; xylene biosynthetic process; xylene formation; xylene synthesis
Comment: This term was made obsolete because xylene is not synthesized by living organisms, and GO does not cover non-biological processes.
obsolete m-xylene biosynthetic process (GO:0046241)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of m-xylene, 1,3-dimethylbenzene, a colorless, liquid aromatic hydrocarbon.
Synonyms: m-xylene anabolism; m-xylene biosynthesis; m-xylene biosynthetic process; m-xylene formation; m-xylene synthesis; meta-xylene biosynthesis; meta-xylene biosynthetic process
Comment: This term was made obsolete because m-xylene is not synthesized by living organisms, and GO does not cover non-biological processes.
obsolete o-xylene biosynthetic process (GO:0046242)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of o-xylene, (1,2-dimethylbenzene) a colorless, liquid aromatic hydrocarbon.
Synonyms: o-xylene anabolism; o-xylene biosynthesis; o-xylene biosynthetic process; o-xylene formation; o-xylene synthesis; ortho-xylene biosynthesis; ortho-xylene biosynthetic process
Comment: This term was made obsolete because o-xylene is not synthesized by living organisms, and GO does not cover non-biological processes.
salicylic acid catabolic process (GO:0046244)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of salicylic acid (2-hydroxybenzoic acid), a derivative of benzoic acid.
Synonyms: salicylic acid breakdown; salicylic acid catabolism; salicylic acid degradation
obsolete styrene biosynthetic process (GO:0046245)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of styrene, an aromatic hydrocarbon liquid used in the manufacture of polystyrene.
Synonyms: styrene anabolism; styrene biosynthesis; styrene biosynthetic process; styrene formation; styrene synthesis
Comment: This term was made obsolete because styrene is not synthesized by living organisms and GO does not cover non-biological processes.
terpene biosynthetic process (GO:0046246)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of terpenes, any of a large group of hydrocarbons made up of isoprene units.
Synonyms: terpene anabolism; terpene biosynthesis; terpene formation; terpene synthesis
terpene catabolic process (GO:0046247)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of terpenes, any of a large group of hydrocarbons made up of isoprene units.
Synonyms: terpene breakdown; terpene catabolism; terpene degradation
alpha-pinene biosynthetic process (GO:0046248)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of alpha-pinene, a monoterpene that may be a significant factor affecting bacterial activities in nature.
Synonyms: alpha-pinene anabolism; alpha-pinene biosynthesis; alpha-pinene formation; alpha-pinene synthesis
alpha-pinene catabolic process (GO:0046249)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of alpha-pinene, a monoterpene that may be a significant factor affecting bacterial activities in nature.
Synonyms: alpha-pinene breakdown; alpha-pinene catabolism; alpha-pinene degradation
limonene biosynthetic process (GO:0046250)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of limonene (4-isopropenyl-1-methyl-cyclohexene), a monocyclic monoterpene.
Synonyms: limonene anabolism; limonene biosynthesis; limonene formation; limonene synthesis
limonene catabolic process (GO:0046251)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of limonene (4-isopropenyl-1-methyl-cyclohexene), a monocyclic monoterpene.
Synonyms: limonene breakdown; limonene catabolism; limonene degradation
toluene biosynthetic process (GO:0046252)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of toluene, a volatile monoaromatic hydrocarbon found in crude petroleum and petroleum products.
Synonyms: toluene anabolism; toluene biosynthesis; toluene formation; toluene synthesis
Comment: This term was reinstated from obsolete.
anaerobic toluene biosynthetic process (GO:0046253)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of toluene, a volatile monoaromatic hydrocarbon found in crude petroleum and petroleum products, in the absence of oxygen.
Synonyms: anaerobic toluene anabolism; anaerobic toluene biosynthesis; anaerobic toluene formation; anaerobic toluene synthesis
Comment: This term was reinstated from obsolete.
anaerobic toluene catabolic process (GO:0046254)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of toluene, a volatile monoaromatic hydrocarbon found in crude petroleum and petroleum products, in the absence of oxygen.
Synonyms: anaerobic toluene breakdown; anaerobic toluene catabolism; anaerobic toluene degradation
obsolete 2,4,6-trinitrotoluene biosynthetic process (GO:0046255)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of 2,4,6-trinitrotoluene, 1-methyl-2,4,6-trinitrobenzene.
Synonyms: 2,4,6-trinitrotoluene anabolism; 2,4,6-trinitrotoluene biosynthesis; 2,4,6-trinitrotoluene biosynthetic process; 2,4,6-trinitrotoluene formation; 2,4,6-trinitrotoluene synthesis
Comment: This term was made obsolete because 2,4,6-trinitrotoluene is not synthesized by living organisms, and GO does not cover non-biological processes.
2,4,6-trinitrotoluene catabolic process (GO:0046256)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of 2,4,6-trinitrotoluene, 1-methyl-2,4,6-trinitrobenzene, a highly explosive pale yellow crystalline solid.
Synonyms: 2,4,6-trinitrotoluene breakdown; 2,4,6-trinitrotoluene catabolism; 2,4,6-trinitrotoluene degradation
obsolete anaerobic 2,4,6-trinitrotoluene biosynthetic process (GO:0046257)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of 2,4,6-trinitrotoluene, 1-methyl-2,4,6-trinitrobenzene, a highly explosive pale yellow crystalline solid, in the absence of oxygen.
Synonyms: anaerobic 2,4,6-trinitrotoluene anabolism; anaerobic 2,4,6-trinitrotoluene biosynthesis; anaerobic 2,4,6-trinitrotoluene biosynthetic process; anaerobic 2,4,6-trinitrotoluene formation; anaerobic 2,4,6-trinitrotoluene synthesis
Comment: This term was made obsolete because 2,4,6-trinitrotoluene is not synthesized by living organisms, and GO does not cover non-biological processes.