LiteFold/GO huggingface dataset:
visceral mesoderm-endoderm interaction involved in midgut development (GO:0007495)
Namespace: biological_process
Definition: The process of cell-cell signaling between visceral mesoderm cells and endoderm cells that is involved in the differentiation of cells in the midgut.
Synonyms: visceral mesoderm/endoderm interaction
anterior midgut development (GO:0007496)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the anterior midgut over time, from its formation to the mature structure.
posterior midgut development (GO:0007497)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the posterior midgut over time, from its formation to the mature structure.
mesoderm development (GO:0007498)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the mesoderm over time, from its formation to the mature structure. The mesoderm is the middle germ layer that develops into muscle, bone, cartilage, blood and connective tissue.
ectoderm and mesoderm interaction (GO:0007499)
Namespace: biological_process
Definition: A cell-cell signaling process occurring between the two gastrulation-generated layers of the ectoderm and the mesoderm.
Synonyms: ectoderm/mesoderm interaction
mesodermal cell fate specification (GO:0007501)
Namespace: biological_process
Definition: The cell fate determination process in which a cell becomes capable of differentiating autonomously into a mesoderm cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed.
Synonyms: mesoderm cell fate specification
Comment: Note that this term was 'fate specification in mesoderm'. String of term was changed to correspond to format of sibling terms 'endoderm cell fate specification' and 'ectoderm cell fate specification'.
digestive tract mesoderm development (GO:0007502)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the digestive tract mesoderm over time, from its formation to the mature structure. The digestive tract mesoderm is portion of the middle layer of the three primary germ layers of the embryo which will go on to form part of the digestive tract of the organism.
fat body development (GO:0007503)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the fat body over time, from its formation to the mature structure. A fat body is an insect gland dorsal to the insect gut, with a function analogous to that of the vertebrate liver. It is a storage organ for fats, glycogen and protein and is a major site of intermediary metabolism.
larval fat body development (GO:0007504)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the larval fat body over time, from its formation to the mature structure. The larval fat body consists of a bilaterally symmetrical monolayer of cells lying between the gut and the muscles of the body wall. As in other tissues of the larva, the cells of the fat body complete their divisions in the embryo and increase in size and ploidy during larval life.
adult fat body development (GO:0007505)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the adult fat body over time, from its formation to the mature structure. Larval fat body cells that remain at eclosion degenerate in the first 2 to 4 days of adult life, leaving behind the smaller cells of the adult fat body.
gonadal mesoderm development (GO:0007506)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the gonadal mesoderm over time, from its formation to the mature structure. The gonadal mesoderm is the middle layer of the three primary germ layers of the embryo which will go on to form the gonads of the organism.
heart development (GO:0007507)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood.
Synonyms: cardiac development; dorsal vessel development
larval heart development (GO:0007508)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the larval heart over time, from its formation to the mature structure. In Drosophila the larval heart (dorsal vessel) is a continuous tube of mesodormal cells that runs beneath the dorsal midline of the epidermis, divided into an anterior aorta and a posterior heart proper.
mesoderm migration involved in gastrulation (GO:0007509)
Namespace: biological_process
Definition: The migration of mesodermal cells during gastrulation to help establish the multilayered body plan of the organism.
cardioblast cell fate determination (GO:0007510)
Namespace: biological_process
Definition: The cell fate determination process in which a cell becomes capable of differentiating autonomously into a cardioblast cell regardless of its environment; upon determination, the cell fate cannot be reversed. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating.
adult heart development (GO:0007512)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the adult heart over time, from its formation to the mature structure.
Synonyms: adult cardiac development
obsolete lymph gland development (GO:0007515)
Namespace: biological_process
Definition: OBSOLETE. The process whose specific outcome is the progression of the lymph gland over time, from its formation to the mature structure. The lymph gland is a small bean-shaped organ made up of a loose meshwork of reticular tissue in which are enmeshed large numbers of lymphocytes, macrophages and accessory cells. Lymph glands are located along the lymphatic system.
Synonyms: lymph gland development
Comment: This term was made obsolete because it was wrongly defined.
hemocyte development (GO:0007516)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the hemocyte over time, from its formation to the mature structure. Hemocytes are blood cells associated with a hemocoel (the cavity containing most of the major organs of the arthropod body) which are involved in defense and clotting of hemolymph, but not involved in transport of oxygen.
Synonyms: arthropod blood cell development
muscle organ development (GO:0007517)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the muscle over time, from its formation to the mature structure. The muscle is an organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work.
myoblast fate determination (GO:0007518)
Namespace: biological_process
Definition: The cell fate determination process in which a cell becomes capable of differentiating autonomously into a myoblast regardless of its environment; upon determination, the cell fate cannot be reversed. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers.
skeletal muscle tissue development (GO:0007519)
Namespace: biological_process
Definition: The developmental sequence of events leading to the formation of adult skeletal muscle tissue. The main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers.
Synonyms: myogenesis
myoblast fusion (GO:0007520)
Namespace: biological_process
Definition: A process in which non-proliferating myoblasts fuse to existing fibers or to myotubes to form new fibers. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers.
muscle cell fate determination (GO:0007521)
Namespace: biological_process
Definition: The cell fate determination process in which a cell becomes capable of differentiating autonomously into a muscle cell regardless of its environment; upon determination, the cell fate cannot be reversed.
visceral muscle development (GO:0007522)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the visceral muscle over time, from its formation to the mature structure.
larval visceral muscle development (GO:0007523)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the larval visceral muscle over time, from its formation to the mature structure.
adult visceral muscle development (GO:0007524)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the adult visceral muscle over time, from its formation to the mature structure.
larval somatic muscle development (GO:0007526)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the larval somatic muscle over time, from its formation to the mature structure.
adult somatic muscle development (GO:0007527)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the adult somatic muscle over time, from its formation to the mature structure.
neuromuscular junction development (GO:0007528)
Namespace: biological_process
Definition: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a neuromuscular junction.
Synonyms: neuromuscular junction organization; neuromuscular junction stability; NMJ stability
establishment of synaptic specificity at neuromuscular junction (GO:0007529)
Namespace: biological_process
Definition: The biological process in which a synapse between a motor neuron and a muscle is initially formed.
sex determination (GO:0007530)
Namespace: biological_process
Definition: Any process that establishes and transmits the specification of sexual status of an individual organism.
mating type determination (GO:0007531)
Namespace: biological_process
Definition: Any process that establishes and transmits the specification of mating type upon an individual. Mating types are the equivalent in microorganisms of the sexes in higher organisms.
regulation of mating-type specific transcription, DNA-templated (GO:0007532)
Namespace: biological_process
Definition: Any mating-type specific process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Synonyms: mating-type specific transcriptional control; regulation of mating-type specific transcription, DNA-dependent
mating type switching (GO:0007533)
Namespace: biological_process
Definition: The conversion of a single-cell organism from one mating type to another by the precise replacement of a DNA sequence at the expressed mating type locus with a copy of a sequence from a donor locus.
Synonyms: mating type switching and recombination
gene conversion at mating-type locus (GO:0007534)
Namespace: biological_process
Definition: The conversion of the mating-type locus from one allele to another resulting from the recombinational repair of a site-specific double-strand break at the mating-type locus with information from a silent donor sequence. There is no reciprocal exchange of information because the mating-type locus copies information from the donor sequence and the donor sequence remains unchanged.
Synonyms: gene conversion at mating-type locus, DNA double-strand break formation; gene conversion at mating-type locus, DNA double-strand break processing; gene conversion at mating-type locus, DNA repair synthesis; gene conversion at mating-type locus, termination of copy-synthesis; heteroduplex formation involved in gene conversion at mating-type locus; strand invasion involved in gene conversion at mating-type locus
donor selection (GO:0007535)
Namespace: biological_process
Definition: The process that determines which donor locus a cell uses, in preference to another, in mating type switching.
Synonyms: donor preference
activation of recombination (HML) (GO:0007536)
Namespace: biological_process
Definition: The activation of recombination at a mating type locus, such that it is used in preference to the other donor locus for mating type switching; exemplified by the HML locus and surrounding sequences on Chromosome III in Saccharomyces cerevisiae.
inactivation of recombination (HML) (GO:0007537)
Namespace: biological_process
Definition: The inactivation of recombination at sequences around a mating type donor locus, with the consequence that the other donor is the only one available for mating type switching; exemplified by the HML locus and surrounding sequences on Chromosome III in Saccharomyces cerevisiae.
primary sex determination (GO:0007538)
Namespace: biological_process
Definition: The sex determination process that results in the initial specification of sexual status of an individual organism.
primary sex determination, soma (GO:0007539)
Namespace: biological_process
Definition: The transmission of information about sexual status from the initial, general, determination to signals specific to the soma.
sex determination, establishment of X:A ratio (GO:0007540)
Namespace: biological_process
Definition: The developmental process in which an organism senses the number of X chromosomes and autosomes in its genomic complement and responds to it.
sex determination, primary response to X:A ratio (GO:0007541)
Namespace: biological_process
Definition: The developmental process in which an organism interprets its X to autosomal chromosomal complement.
primary sex determination, germ-line (GO:0007542)
Namespace: biological_process
Definition: The transmission of information about sexual status, from the initial general determination, to signals specific to the germ-line.
sex determination, somatic-gonadal interaction (GO:0007543)
Namespace: biological_process
Definition: The process that mediates the interactions between somatic cells and gonadal cells that ultimately results in the specification of sexual status of the organism.
Synonyms: sex determination, somatic/gonadal interaction
obsolete processes downstream of sex determination signal (GO:0007545)
Namespace: biological_process
Definition: OBSOLETE. The sex determination processes that take place after the initial transmission of the sexual phenotype to specific information pathways.
Comment: The reason for obsoletion is that the meaning of the term is ambiguous.
obsolete somatic processes downstream of sex determination signal (GO:0007546)
Namespace: biological_process
Definition: OBSOLETE. The events determining the somatic sexual phenotype after the initial transmission of that phenotype to soma-specific information pathways.
Comment: The reason for obsoletion is that the meaning of the term is ambiguous.
obsolete germ-line processes downstream of sex determination signal (GO:0007547)
Namespace: biological_process
Definition: OBSOLETE. The events determining the germ-line sexual phenotype after the initial transmission of that phenotype to germ-line-specific information pathways.
Comment: The reason for obsoletion is that the meaning of the term is ambiguous.
sex differentiation (GO:0007548)
Namespace: biological_process
Definition: The establishment of the sex of an organism by physical differentiation.
sex-chromosome dosage compensation (GO:0007549)
Namespace: biological_process
Definition: Compensating for the variation in the unpaired sex chromosome:autosome chromosome ratios between sexes by activation or inactivation of genes on one or both of the sex chromosomes.
Synonyms: dosage compensation; sex chromosome dosage compensation
obsolete establishment of dosage compensation (GO:0007550)
Namespace: biological_process
Definition: OBSOLETE. (Was not defined before being made obsolete).
Synonyms: establishment of dosage compensation
Comment: This term was made obsolete because it was undefined and because there is no common mechanism of establishment of dosage compensation in different organisms.
metamorphosis (GO:0007552)
Namespace: biological_process
Definition: A biological process in which an animal physically develops after birth or hatching, involving a conspicuous and relatively abrupt change in the animal's form or structure. Examples include the change from tadpole to frog, and the change from larva to adult. An example of this is found in Drosophila melanogaster.
regulation of ecdysteroid metabolic process (GO:0007553)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving ecdysteroids, a group of polyhydroxylated ketosteroids which initiate post-embryonic development, including the metamorphosis of immature forms and the development of the reproductive system and the maturation of oocytes in adult females.
Synonyms: regulation of ecdysteroid metabolism
regulation of ecdysteroid biosynthetic process (GO:0007554)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of ecdysteroids.
Synonyms: regulation of ecdysteroid anabolism; regulation of ecdysteroid biosynthesis; regulation of ecdysteroid formation; regulation of ecdysteroid synthesis
regulation of ecdysteroid secretion (GO:0007555)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the regulated release of ecdysteroid from a cell.
obsolete regulation of juvenile hormone metabolic process (GO:0007556)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving juvenile hormone.
Synonyms: regulation of juvenile hormone metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
regulation of juvenile hormone biosynthetic process (GO:0007557)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of juvenile hormone.
Synonyms: regulation of juvenile hormone anabolism; regulation of juvenile hormone biosynthesis; regulation of juvenile hormone formation; regulation of juvenile hormone synthesis
regulation of juvenile hormone secretion (GO:0007558)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of juvenile hormone secretion.
obsolete histolysis (GO:0007559)
Namespace: biological_process
Definition: OBSOLETE. The breakdown of tissues; usually, if not always, accompanied by cell death, followed by the complete dissolution of dead tissue.
Comment: This term was made obsolete because it refers to a phenotype. When death of a cell or tissue is a result of a true biological process, this should be captured using 'programmed cell death' or one of its descendants.
imaginal disc morphogenesis (GO:0007560)
Namespace: biological_process
Definition: The process in which the anatomical structures derived from an imaginal disc are generated and organized. The imaginal discs are epithelial infoldings in the larvae of holometabolous insects that develop into adult appendages (legs, antennae, wings, etc.) during metamorphosis from larval to adult form.
Synonyms: imaginal disc metamorphosis
imaginal disc eversion (GO:0007561)
Namespace: biological_process
Definition: The eversion (turning inside out) of imaginal discs from their peripodial sacs, resulting in movement of the epithelium to the outside of the larval epidermis.
regulation of eclosion (GO:0007563)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the emergence of an insect from a pupa-case or of a larva from an egg.
embryo implantation (GO:0007566)
Namespace: biological_process
Definition: Attachment of the blastocyst to the uterine lining.
Synonyms: blastocyst implantation
parturition (GO:0007567)
Namespace: biological_process
Definition: The reproductive process in which the parent is separated from its offspring either by giving birth to live young or by laying eggs.
Synonyms: egg laying; giving birth
obsolete aging (GO:0007568)
Namespace: biological_process
Definition: OBSOLETE. A developmental process that is a deterioration and loss of function over time. Aging includes loss of functions such as resistance to disease, homeostasis, and fertility, as well as wear and tear. Aging includes cellular senescence, but is more inclusive. May precede death and may succeed developmental maturation (GO:0021700).
Synonyms: ageing
Comment: The reason for obsoletion is that it is not a normal, genetically encoded biolgical program, but a phenotype resulting from cellular malfunctions that accumulate over time, including oxidative damage, etc.
obsolete cell aging (GO:0007569)
Namespace: biological_process
Definition: OBSOLETE. An aging process that has as participant a cell after a cell has stopped dividing. Cell aging may occur when a cell has temporarily stopped dividing through cell cycle arrest (GO:0007050) or when a cell has permanently stopped dividing, in which case it is undergoing cellular senescence (GO:0090398). May precede cell death (GO:0008219) and succeed cell maturation (GO:0048469).
Synonyms: cell ageing
Comment: This term was obsoleted because it represents a phenotype.
obsolete age dependent accumulation of genetic damage (GO:0007570)
Namespace: biological_process
Definition: OBSOLETE. (Was not defined before being made obsolete).
Synonyms: age dependent accumulation of genetic damage
Comment: This term was made obsolete because it does not describe a biological process.
obsolete age-dependent general metabolic decline (GO:0007571)
Namespace: biological_process
Definition: OBSOLETE. A developmental process that arises as the cell progresses toward the end of its lifespan and cause changes cellular metabolism, resulting in a decline in cell function; for example, one aspect of general metabolic decline is a decrease in the efficiency of protein synthesis.
Synonyms: age-dependent decreased translational activity; age-dependent increased protein content; age-dependent yeast cell size increase; nucleolar size increase
Comment: This term was obsolete because it represents a phenotype.
obsolete age dependent decreased translational activity (GO:0007572)
Namespace: biological_process
Definition: OBSOLETE. (Was not defined before being made obsolete).
Synonyms: age dependent decreased translational activity
Comment: This term was made obsolete because it does not describe a biological process.
obsolete age dependent increased protein content (GO:0007573)
Namespace: biological_process
Definition: OBSOLETE. (Was not defined before being made obsolete).
Synonyms: age dependent increased protein content
Comment: This term was made obsolete because it does not describe a biological process.
obsolete cell aging (sensu Saccharomyces) (GO:0007574)
Namespace: biological_process
Definition: OBSOLETE. Process associated with continued cell division (budding) by the mother cell. Age is often measured by counting the number of bud scars on the cell.
Synonyms: cell aging (sensu Saccharomyces)
Comment: This term was made obsolete because it does not describe a biological process that is distinct from 'cell aging'.
obsolete nucleolar size increase (GO:0007575)
Namespace: biological_process
Definition: OBSOLETE. The process of nucleolar expansion.
Synonyms: nucleolar size increase
Comment: This term was made obsolete because it does not describe a biological process.
obsolete nucleolar fragmentation (GO:0007576)
Namespace: biological_process
Definition: OBSOLETE. The cell aging process that results in the nucleolus breaking down into fragments.
Synonyms: nucleolar size increase
Comment: This term was obsoleted because it represents a readout.