LiteFold/GO huggingface dataset:
central vacuole (GO:0042807)
Namespace: cellular_component
Definition: A membrane-enclosed sac that takes up most of the volume of a mature plant cell. Functions include storage, separation of toxic byproducts, and cell growth determination.
obsolete neuronal Cdc2-like kinase binding (GO:0042808)
Namespace: molecular_function
Definition: OBSOLETE. Binding to neuronal Cdc2-like kinase, an enzyme involved in the regulation of neuronal differentiation and neuro-cytoskeleton dynamics.
Synonyms: neuronal Cdc2-like kinase binding
Comment: This term was made obsolete because it represents binding to an individual protein.
nuclear vitamin D receptor binding (GO:0042809)
Namespace: molecular_function
Definition: Binding to a nuclear vitamin D receptor, a nuclear receptor that mediates the action of vitamin D by binding DNA and controlling the transcription of hormone-sensitive genes.
Synonyms: calciferol receptor binding; VDR binding; vitamin D receptor binding
pheromone metabolic process (GO:0042810)
Namespace: biological_process
Definition: The chemical reactions and pathways involving pheromones, a substance that is secreted and released by an organism and detected by a second organism of the same or a closely related species, in which it causes a specific reaction, such as a definite behavioral reaction or a developmental process.
Synonyms: pheromone metabolism
pheromone biosynthetic process (GO:0042811)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of pheromones, a substance that is secreted and released by an organism and detected by a second organism of the same or a closely related species, in which it causes a specific reaction, such as a definite behavioral reaction or a developmental process.
Synonyms: pheromone anabolism; pheromone biosynthesis; pheromone formation; pheromone synthesis
pheromone catabolic process (GO:0042812)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of pheromones, a substance that is secreted and released by an organism and detected by a second organism of the same or a closely related species, in which it causes a specific reaction, such as a definite behavioral reaction or a developmental process.
Synonyms: pheromone breakdown; pheromone catabolism; pheromone degradation
monopolar cell growth (GO:0042814)
Namespace: biological_process
Definition: Polarized growth from one end of a cell.
Synonyms: monopolar cell elongation; monopolar growth; polar cell elongation
bipolar cell growth (GO:0042815)
Namespace: biological_process
Definition: The process in which a cell irreversibly increases in size along one axis through simultaneous polarized growth from opposite ends of a cell, resulting in morphogenesis of the cell.
Synonyms: bipolar cell elongation; bipolar growth; polar cell elongation
Comment: Bipolar cell growth refers to a change in both cell size and cell shape. For shape changes where cell size is not affected, consider instead the term 'establishment or maintenance of bipolar cell polarity resulting in cell shape ; GO:0061246' and its children.
pyridoxal metabolic process (GO:0042817)
Namespace: biological_process
Definition: The chemical reactions and pathways involving 3-hydroxy-5-(hydroxymethyl)-2-methyl-4-pyridinecarboxaldehyde, one of the vitamin B6 compounds. Pyridoxal, pyridoxamine and pyridoxine are collectively known as vitamin B6, and are efficiently converted to the biologically active form of vitamin B6, pyridoxal phosphate.
Synonyms: pyridoxal metabolism
vitamin B6 biosynthetic process (GO:0042819)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of any of the vitamin B6 compounds; pyridoxal, pyridoxamine and pyridoxine and the active form, pyridoxal phosphate.
Synonyms: pyridoxine-5'-phosphate biosynthesis; vitamin B6 anabolism; vitamin B6 biosynthesis; vitamin B6 formation; vitamin B6 synthesis
vitamin B6 catabolic process (GO:0042820)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of any of the vitamin B6 compounds; pyridoxal, pyridoxamine and pyridoxine and the active form, pyridoxal phosphate.
Synonyms: vitamin B6 breakdown; vitamin B6 catabolism; vitamin B6 degradation
pyridoxal biosynthetic process (GO:0042821)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of 3-hydroxy-5-(hydroxymethyl)-2-methyl-4-pyridinecarboxaldehyde, one of the vitamin B6 compounds.
Synonyms: pyridoxal anabolism; pyridoxal biosynthesis; pyridoxal formation; pyridoxal synthesis
pyridoxal 5'-phosphate metabolic process (GO:0042822)
Namespace: biological_process
Definition: The chemical reactions and pathways involving pyridoxal phosphate, pyridoxal phosphorylated at the hydroxymethyl group of C-5, the active form of vitamin B6.
Synonyms: active vitamin B6 metabolic process; active vitamin B6 metabolism; pyridoxal phosphate metabolism
pyridoxal 5'-phosphate biosynthetic process (GO:0042823)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of pyridoxal phosphate, pyridoxal phosphorylated at the hydroxymethyl group of C-5, the active form of vitamin B6.
Synonyms: active vitamin B6 biosynthesis; active vitamin B6 biosynthetic process; pyridoxal phosphate anabolism; pyridoxal phosphate biosynthesis; pyridoxal phosphate formation; pyridoxal phosphate synthesis
MHC class I peptide loading complex (GO:0042824)
Namespace: cellular_component
Definition: A large, multisubunit complex which consists of the MHC class I-beta 2 microglobulin dimer, the transporter associated with antigen presentation (TAP), tapasin (an MHC-encoded membrane protein), the chaperone calreticulin and the thiol oxidoreductase ERp57. Functions in the assembly of peptides with newly synthesized MHC class I molecules.
Synonyms: peptide-loading complex; PLC
Comment: Note that although this complex is located in the endoplasmic reticulum, there is some evidence that it may also be found in the Golgi.
TAP complex (GO:0042825)
Namespace: cellular_component
Definition: A heterodimer composed of the subunits TAP1 and TAP2 (transporter associated with antigen presentation). Functions in the transport of antigenic peptides from the cytosol to the lumen of the endoplasmic reticulum.
Synonyms: transporter associated with antigen presentation
histone deacetylase binding (GO:0042826)
Namespace: molecular_function
Definition: Binding to histone deacetylase.
platelet dense granule (GO:0042827)
Namespace: cellular_component
Definition: Electron-dense granule occurring in blood platelets that stores and secretes adenosine nucleotides and serotonin. They contain a highly condensed core consisting of serotonin, histamine, calcium, magnesium, ATP, ADP, pyrophosphate and membrane lysosomal proteins.
Synonyms: bull's eye body; platelet dense body
defense response to protozoan (GO:0042832)
Namespace: biological_process
Definition: Reactions triggered in response to the presence of a protozoan that act to protect the cell or organism.
Synonyms: defence response to pathogenic protozoa; defence response to protozoa; defence response to protozoon; defense response to pathogenic protozoa; defense response to protozoa; defense response to protozoan, incompatible interaction; defense response to protozoon; resistance response to pathogenic protozoa; resistance response to pathogenic protozoan
peptidoglycan binding (GO:0042834)
Namespace: molecular_function
Definition: Interacting selectively and non-covalently, in a non-covalent manner, with peptidoglycan, any of a class of glycoconjugates found in bacterial cell walls.
BRE binding (GO:0042835)
Namespace: molecular_function
Definition: Binding to a BRE RNA element (Bruno response element).
D-glucarate metabolic process (GO:0042836)
Namespace: biological_process
Definition: The chemical reactions and pathways involving D-glucarate, the D-enantiomer of glucarate. D-glucarate is derived from either D-glucose or L-gulose.
Synonyms: D-glucarate metabolism; saccharate metabolic process; saccharate metabolism
D-glucarate biosynthetic process (GO:0042837)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of D-glucarate, the D-enantiomer of glucarate.
Synonyms: D-glucarate anabolism; D-glucarate biosynthesis; D-glucarate formation; D-glucarate synthesis; saccharate biosynthesis; saccharate biosynthetic process
D-glucarate catabolic process (GO:0042838)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of D-glucarate, the D-enantiomer of glucarate.
Synonyms: D-glucarate breakdown; D-glucarate catabolism; D-glucarate degradation; saccharate catabolic process; saccharate catabolism
obsolete D-glucuronate metabolic process (GO:0042839)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving D-glucuronate, the D-enantiomer of glucuronate.
Synonyms: D-glucuronate metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
D-glucuronate catabolic process (GO:0042840)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of D-glucuronate, the D-enantiomer of glucuronate.
Synonyms: D-glucuronate breakdown; D-glucuronate catabolism; D-glucuronate degradation
D-glucuronate biosynthetic process (GO:0042841)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of D-glucuronate, the D-enantiomer of glucuronate.
Synonyms: D-glucuronate anabolism; D-glucuronate biosynthesis; D-glucuronate formation; D-glucuronate synthesis
D-xylose catabolic process (GO:0042843)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of D-xylose, a naturally occurring plant polysaccharide.
Synonyms: D-xylose breakdown; D-xylose catabolism; D-xylose degradation
glycol metabolic process (GO:0042844)
Namespace: biological_process
Definition: The chemical reactions and pathways involving glycol, a diol in which the two hydroxy groups are on different carbon atoms, usually but not necessarily adjacent.
Synonyms: dihydric alcohol metabolic process; dihydric alcohol metabolism; glycol metabolism
glycol biosynthetic process (GO:0042845)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of glycol, a diol in which the two hydroxy groups are on different carbon atoms, usually but not necessarily adjacent.
Synonyms: dihydric alcohol biosynthesis; dihydric alcohol biosynthetic process; glycol anabolism; glycol biosynthesis; glycol formation; glycol synthesis
glycol catabolic process (GO:0042846)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of glycol, a diol in which the two hydroxy groups are on different carbon atoms, usually but not necessarily adjacent.
Synonyms: dihydric alcohol catabolic process; dihydric alcohol catabolism; glycol breakdown; glycol catabolism; glycol degradation
obsolete sorbose biosynthetic process (GO:0042847)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of sorbose, the ketohexose xylo-2-hexulose. Sorbose is produced commercially by fermentation and is used as an intermediate in the manufacture of ascorbic acid.
Synonyms: sorbose anabolism; sorbose biosynthesis; sorbose formation; sorbose synthesis
Comment: The reason for obsoletion is that this term was an unnecessary grouping term.
obsolete sorbose catabolic process (GO:0042848)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the breakdown of sorbose, the ketohexose xylo-2-hexulose. Sorbose is produced commercially by fermentation and is used as an intermediate in the manufacture of ascorbic acid.
Synonyms: sorbose breakdown; sorbose catabolism; sorbose degradation
Comment: The reason for obsoletion is that this term was an unnecessary grouping term.
L-sorbose biosynthetic process (GO:0042849)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of L-sorbose, the L-enantiomer of the ketohexose xylo-2-hexulose. L-sorbose is formed by bacterial oxidation of sorbitol.
Synonyms: L-sorbose anabolism; L-sorbose biosynthesis; L-sorbose formation; L-sorbose synthesis
obsolete L-alanine metabolic process (GO:0042851)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving L-alanine, the L-enantiomer of 2-aminopropanoic acid, i.e. (2S)-2-aminopropanoic acid.
Synonyms: L-alanine metabolism
Comment: This term was obsoleted because it is an unnecessary grouping term.
L-alanine biosynthetic process (GO:0042852)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of L-alanine, the L-enantiomer of 2-aminopropanoic acid, i.e. (2S)-2-aminopropanoic acid.
Synonyms: L-alanine anabolism; L-alanine biosynthesis; L-alanine formation; L-alanine synthesis
L-alanine catabolic process (GO:0042853)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of L-alanine.
Synonyms: L-alanine breakdown; L-alanine catabolism; L-alanine degradation
eugenol metabolic process (GO:0042854)
Namespace: biological_process
Definition: The chemical reactions and pathways involving eugenol, a colorless, aromatic, liquid hydrocarbon (C10H12O2) found in clove oil.
Synonyms: 4-allyl-2-methoxyphenol metabolic process; 4-allyl-2-methoxyphenol metabolism; eugenic acid metabolic process; eugenic acid metabolism; eugenol metabolism
eugenol biosynthetic process (GO:0042855)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of eugenol, a colorless, aromatic, liquid hydrocarbon (C10H12O2) found in clove oil.
Synonyms: 4-allyl-2-methoxyphenol biosynthesis; 4-allyl-2-methoxyphenol biosynthetic process; eugenic acid biosynthesis; eugenic acid biosynthetic process; eugenol anabolism; eugenol biosynthesis; eugenol formation; eugenol synthesis
eugenol catabolic process (GO:0042856)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of eugenol, a colorless, aromatic, liquid hydrocarbon (C10H12O2) found in clove oil.
Synonyms: 4-allyl-2-methoxyphenol catabolic process; 4-allyl-2-methoxyphenol catabolism; eugenic acid catabolic process; eugenic acid catabolism; eugenol breakdown; eugenol catabolism; eugenol degradation
obsolete chrysobactin metabolic process (GO:0042857)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving the siderophore chrysobactin (alpha-N-(2,3-dihydroxybenzoyl)-D-lysyl-L-serine).
Synonyms: chrysobactin metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
chrysobactin biosynthetic process (GO:0042858)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of the siderophore chrysobactin (alpha-N-(2,3-dihydroxybenzoyl)-D-lysyl-L-serine).
Synonyms: chrysobactin anabolism; chrysobactin biosynthesis; chrysobactin biosynthetic process, peptide formation; chrysobactin biosynthetic process, peptide modification; chrysobactin formation; chrysobactin synthesis
chrysobactin catabolic process (GO:0042859)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of the siderophore chrysobactin (alpha-N-(2,3-dihydroxybenzoyl)-D-lysyl-L-serine).
Synonyms: chrysobactin breakdown; chrysobactin catabolism; chrysobactin degradation
obsolete achromobactin metabolic process (GO:0042860)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving achromobactin, a citrate siderophore.
Synonyms: achromobactin metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
achromobactin catabolic process (GO:0042862)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of achromobactin, a citrate siderophore.
Synonyms: achromobactin breakdown; achromobactin catabolism; achromobactin degradation
obsolete pyochelin metabolic process (GO:0042863)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving the siderochrome pyochelin (2-(2-o-hydroxyphenyl-2-thiazolin-4-yl)-3-methylthiazolidine-4-carboxylic acid).
Synonyms: pyochelin metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
pyochelin biosynthetic process (GO:0042864)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of the siderochrome pyochelin (2-(2-o-hydroxyphenyl-2-thiazolin-4-yl)-3-methylthiazolidine-4-carboxylic acid).
Synonyms: pyochelin anabolism; pyochelin biosynthesis; pyochelin biosynthetic process, peptide formation; pyochelin biosynthetic process, peptide modification; pyochelin formation; pyochelin synthesis
pyruvate biosynthetic process (GO:0042866)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of pyruvate, 2-oxopropanoate.
Synonyms: pyruvate anabolism; pyruvate biosynthesis; pyruvate formation; pyruvate synthesis
pyruvate catabolic process (GO:0042867)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of pyruvate, 2-oxopropanoate.
Synonyms: pyruvate breakdown; pyruvate catabolism; pyruvate degradation
antisense RNA metabolic process (GO:0042868)
Namespace: biological_process
Definition: The chemical reactions and pathways involving antisense RNA, an RNA molecule complementary in sequence to another RNA or DNA molecule, which, by binding the latter, acts to inhibit its function and/or completion of synthesis.
Synonyms: antisense RNA metabolism
aldarate transmembrane transport (GO:0042869)
Namespace: biological_process
Definition: The process in which aldarate is transported across a lipid bilayer, from one side of a membrane to the other.
Synonyms: aldarate transport
D-glucarate transmembrane transport (GO:0042870)
Namespace: biological_process
Definition: The process in which D-glucarate, the D-enantiomer of glucarate, is transported across a lipid bilayer, from one side of a membrane to the other.
Synonyms: D-glucarate transport
aldonate transmembrane transport (GO:0042873)
Namespace: biological_process
Definition: The process in which aldonate is transported across a lipid bilayer, from one side of a membrane to the other.
Synonyms: aldonate transport
D-glucuronate transmembrane transport (GO:0042874)
Namespace: biological_process
Definition: The process in which D-glucuronate, the D-enantiomer of glucuronate, is transported across a lipid bilayer, from one side of a membrane to the other.
Synonyms: D-glucuronate transport
D-galactonate transmembrane transport (GO:0042875)
Namespace: biological_process
Definition: The process in which D-galactonate, the D-enantiomer of galactonate, is transported across a lipid bilayer, from one side of a membrane to the other.
Synonyms: D-galactonate transport
aldarate transmembrane transporter activity (GO:0042876)
Namespace: molecular_function
Definition: Enables the transfer of aldarate from one side of a membrane to the other.
D-glucarate transmembrane transporter activity (GO:0042878)
Namespace: molecular_function
Definition: Enables the transfer of D-glucarate, the D-enantiomer of glucarate, from one side of a membrane to the other.
aldonate transmembrane transporter activity (GO:0042879)
Namespace: molecular_function
Definition: Enables the transfer of aldonate from one side of a membrane to the other.
D-glucuronate transmembrane transporter activity (GO:0042880)
Namespace: molecular_function
Definition: Enables the transfer of D-glucuronate, the D-enantiomer of glucuronate, from one side of a membrane to the other.
D-galactonate:proton symporter activity (GO:0042881)
Namespace: molecular_function
Definition: Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: D-galactonate(out) + H+(out) = D-galactonate(in) + H+(in).
Synonyms: D-galactonate transmembrane transporter activity
L-arabinose transmembrane transport (GO:0042882)
Namespace: biological_process
Definition: The process in which L-arabinose, the L-enantiomer of arabinose, is transported across a lipid bilayer, from one side of a membrane to the other.
Synonyms: L-arabinose transport
cysteine transport (GO:0042883)
Namespace: biological_process
Definition: The directed movement of cysteine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
Synonyms: L-cysteine transport
microcin transport (GO:0042884)
Namespace: biological_process
Definition: The directed movement of microcin, a class of glycine-rich, bactericidal peptides (antibiotics) produced by some enteric bacteria, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
microcin B17 transport (GO:0042885)
Namespace: biological_process
Definition: The directed movement of microcin B17, a bactericidal peptide (antibiotic) produced by some enteric bacteria, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
obsolete amide transport (GO:0042886)
Namespace: biological_process
Definition: OBSOLETE. The directed movement of an amide, any compound containing one, two, or three acyl groups attached to a nitrogen atom, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
Comment: The reason for obsoletion is that this term was an unnecessary grouping term.
obsolete amide transmembrane transporter activity (GO:0042887)
Namespace: molecular_function
Definition: OBSOLETE. Enables the transfer of an amide, any compound containing one, two, or three acyl groups attached to a nitrogen atom, from one side of a membrane to the other.
Comment: The reason for obsoletion is that this term was an unnecessary grouping term.
molybdenum ion transmembrane transporter activity (GO:0042888)
Namespace: molecular_function
Definition: Enables the transfer of molybdenum (Mo) ions from one side of a membrane to the other.
obsolete 3-phenylpropionic acid transport (GO:0042889)
Namespace: biological_process
Definition: OBSOLETE. The directed movement of 3-phenylpropionic acid into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
Synonyms: 3-phenylpropionate transport; HCA transport; hydrocinnamic acid transport
Comment: The reason for obsoletion is that there is no evidence that this process exists.
obsolete 3-phenylpropionic acid transmembrane transporter activity (GO:0042890)
Namespace: molecular_function
Definition: OBSOLETE. Enables the transfer of 3-phenylpropionic acid from one side of a membrane to the other.
Synonyms: 3-phenylpropionate acid transporter activity; HCA transporter activity; hydrocinnamic acid transporter activity
Comment: The reason for obsoletion is that there is no evidence that this function exists.
obsolete antibiotic transport (GO:0042891)
Namespace: biological_process
Definition: OBSOLETE. The directed movement of an antibiotic, a substance produced by or derived from certain fungi, bacteria, and other organisms, that can destroy or inhibit the growth of other microorganisms, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
Comment: The reason for obsoletion is that this term has been inconsistently used. For export of an antibiotic by the organism that synthesizes it, consider 'GO:0140115 ; export across plasma membrane'. For export of an antibiotic by the target organism, consider 'GO:1990961 ; xenobiotic detoxification by transmembrane export across the plasma membrane'.