LiteFold/GO huggingface dataset:
obsolete positive regulation by organism of symbiont programmed cell death (GO:0052523)
Namespace: biological_process
Definition: OBSOLETE. Any process by which an organism activates, maintains or increases the frequency, rate or extent of programmed cell death in the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.
Synonyms: enhancement or induction of symbiont programmed cell death; positive regulation by organism of symbiont programmed cell death
Comment: This term was made obsolete because it does not represent a real biological process.
obsolete positive regulation by organism of symbiont salicylic acid-mediated defense response (GO:0052524)
Namespace: biological_process
Definition: OBSOLETE. Any process by which an organism activates, maintains or increases the frequency, rate or extent of the salicylic acid-mediated defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.
Synonyms: induction by organism of symbiont SA-mediated defense response; induction by organism of symbiont salicylic acid-mediated defense response; positive regulation by organism of symbiont SA-mediated defense response; positive regulation by organism of symbiont salicylic acid-mediated defense response
Comment: This term was made obsolete because it does not represent a real biological process.
obsolete positive regulation by organism of symbiont resistance gene-dependent defense response (GO:0052530)
Namespace: biological_process
Definition: OBSOLETE. Any process by which an organism activates, maintains or increases the frequency, rate or extent of the resistance gene-dependent defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.
Synonyms: positive regulation by organism of defense response in symbiont by specific elicitors; positive regulation by organism of pathogen-race/symbiont plant cultivar-specific resistance in symbiont; positive regulation by organism of symbiont gene-for-gene resistance; positive regulation by organism of symbiont resistance gene-dependent defense response
Comment: This term was made obsolete because it does not represent a real biological process.
obsolete positive regulation by organism of defense-related symbiont calcium ion flux (GO:0052531)
Namespace: biological_process
Definition: OBSOLETE. Any process by which an organism activates, maintains or increases the frequency, rate or extent of fluxes of calcium ions that occur as part of the defense response of a host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Synonyms: positive regulation by organism of defense-related symbiont Ca2+ flux; positive regulation by organism of defense-related symbiont calcium ion flux
Comment: This term was made obsolete because it does not represent a real biological process.
obsolete positive regulation by organism of induced systemic resistance in symbiont (GO:0052534)
Namespace: biological_process
Definition: OBSOLETE. Any process by which an organism activates, maintains or increases the frequency, rate or extent of induced systemic resistance in the symbiont organism; induced systemic resistance is a response that confers broad spectrum systemic resistance to disease and that does not depend upon salicylic acid signaling. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.
Synonyms: positive regulation by organism of induced systemic resistance in symbiont
Comment: This term was made obsolete because it does not represent a real biological process.
obsolete positive regulation by organism of systemic acquired resistance in symbiont (GO:0052536)
Namespace: biological_process
Definition: OBSOLETE. Any process by which an organism activates, maintains or increases the frequency, rate or extent of systemic acquired resistance in the symbiont organism; systemic acquired resistance is a salicylic acid-mediated response that confers broad spectrum systemic resistance. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.
Synonyms: positive regulation by organism of systemic acquired resistance in symbiont
Comment: This term was made obsolete because it does not represent a real biological process.
obsolete positive regulation by organism of defense-related symbiont cell wall thickening (GO:0052540)
Namespace: biological_process
Definition: OBSOLETE. Any process by which an organism activates, maintains or increases the frequency, rate or extent of symbiont processes resulting in the thickening of its cell walls, occurring as part of the defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.
Synonyms: positive regulation by organism of defense-related symbiont cell wall thickening; positive regulation by organism of symbiont defensive cell wall thickening
Comment: This term was made obsolete because it does not represent a real biological process.
plant-type cell wall cellulose metabolic process (GO:0052541)
Namespace: biological_process
Definition: The chemical reactions and pathways involving cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation, as part of the organization and biogenesis of the cell wall.
Synonyms: cell wall cellulose metabolism; cellulose and pectin-containing cell wall cellulose metabolic process
callose deposition in cell wall (GO:0052543)
Namespace: biological_process
Definition: Any process in which callose is transported to, and/or maintained in, the cell wall. Callose is a linear 1,3-beta-d-glucan formed from UDP-glucose and is found in certain plant cell walls.
Synonyms: callose localization in cell wall; cell wall callose deposition; cell wall callose localization
defense response by callose deposition in cell wall (GO:0052544)
Namespace: biological_process
Definition: Any process in which callose is transported to, and/or maintained in, the cell wall during the defense response. Callose is a linear 1,3-beta-d-glucan formed from UDP-glucose and is found in certain plant cell walls.
Synonyms: callose deposition in cell wall during defense response; callose localization in cell wall during defense response; cell wall callose deposition during defense response; cell wall callose localization during defense response
callose localization (GO:0052545)
Namespace: biological_process
Definition: Any process in which callose is transported to, and/or maintained in, a specific location. Callose is a linear 1,3-beta-d-glucan formed from UDP-glucose and is found in certain plant cell walls.
Synonyms: callose localisation
cell wall pectin metabolic process (GO:0052546)
Namespace: biological_process
Definition: The chemical reactions and pathways involving pectin, a polymer containing a backbone of alpha-1,4-linked D-galacturonic acid residues, as part of the organization and biogenesis of the cell wall.
Synonyms: cell wall pectin metabolism; cellulose and pectin-containing cell wall pectin metabolic process; pectin metabolism during cell wall biogenesis; plant-type cell wall pectin metabolic process
regulation of endopeptidase activity (GO:0052548)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of endopeptidase activity, the endohydrolysis of peptide bonds within proteins.
Synonyms: protease regulator activity
symbiont-mediated perturbation of host immune response (GO:0052553)
Namespace: biological_process
Definition: A process in which a symbiont alters or subverts the immune response of the host organism; the immune response is any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Synonyms: modulation by organism of immune response of other organism involved in symbiotic interaction; modulation by symbiont of host immune response; perturbation of host immune response
obsolete modulation by organism of symbiont immune response (GO:0052554)
Namespace: biological_process
Definition: OBSOLETE. Any process by which an organism modulates the frequency, rate or extent of the immune response of the symbiont organism; the immune response is any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.
Synonyms: modulation by organism of symbiont immune response
Comment: This term was made obsolete because it does not represent a real biological process.
obsolete positive regulation by organism of symbiont immune response (GO:0052557)
Namespace: biological_process
Definition: OBSOLETE. Any process by which an organism activates, maintains or increases the frequency, rate or extent of the immune response of the symbiont organism; the immune response is any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.
Synonyms: positive regulation by organism of symbiont immune response
Comment: This term was made obsolete because it does not represent a real biological process.
obsolete induction by symbiont of host immune response (GO:0052559)
Namespace: biological_process
Definition: OBSOLETE. Any process in which a symbiont activates the immune response of the host organism; the immune response is any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Synonyms: activation by symbiont of host immune response; induction by organism of immune response of other organism involved in symbiotic interaction; positive regulation by organism of immune response of other organism involved in symbiotic interaction; positive regulation by symbiont of host immune response; stimulation by symbiont of host immune response; up regulation by symbiont of host immune response; up-regulation by symbiont of host immune response; upregulation by symbiont of host immune response
Comment: The reason for obsoletion is that this terms was not clearly defined and has been incorrectly used.
obsolete induction by organism of symbiont immune response (GO:0052560)
Namespace: biological_process
Definition: OBSOLETE. Any process by which an organism activates the immune response of the symbiont organism; the immune response is any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.
Synonyms: induction by organism of symbiont immune response
Comment: This term was made obsolete because it does not represent a real biological process.
symbiont-mediated suppression of host immune response (GO:0052562)
Namespace: biological_process
Definition: A process in which a symbiont interferes with, inhibits or disrupts the normal execution of an immune response of the host organism. The immune response is any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Synonyms: down regulation by symbiont of host immune response; down-regulation by symbiont of host immune response; downregulation by symbiont of host immune response; inhibition by symbiont of host immune response; negative regulation by organism of immune response of other organism involved in symbiotic interaction; negative regulation by symbiont of host immune response; suppression by symbiont of host immune response
obsolete negative regulation by organism of symbiont immune response (GO:0052563)
Namespace: biological_process
Definition: OBSOLETE. Any process by which an organism stops, prevents, or reduces the frequency, rate or extent of the immune response of the symbiont organism; the immune response is any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.
Synonyms: negative regulation by organism of symbiont immune response
Comment: This term was made obsolete because it does not represent a real biological process.
obsolete response to symbiont phytoalexin production (GO:0052568)
Namespace: biological_process
Definition: OBSOLETE. A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of phytoalexins produced as part of the defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.
Synonyms: response to symbiont phytoalexin production
Comment: This term was made obsolete because it does not represent a real biological process.
obsolete response to defense-related symbiont nitric oxide production (GO:0052569)
Namespace: biological_process
Definition: OBSOLETE. A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of nitric oxide produced as part of the defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.
Synonyms: response to defense-related symbiont nitric oxide production
Comment: This term was made obsolete because it does not represent a real biological process.
obsolete response to defense-related symbiont reactive oxygen species production (GO:0052570)
Namespace: biological_process
Definition: OBSOLETE. A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of reactive oxygen species produced as part of the defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.
Synonyms: response to defense-related symbiont reactive oxygen species production
Comment: This term was made obsolete because it does not represent a real biological process.
response to host immune response (GO:0052572)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detecting the immune response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Synonyms: response to immune response of other organism involved in symbiotic interaction
UDP-D-galactose metabolic process (GO:0052573)
Namespace: biological_process
Definition: The chemical reactions and pathways involving UDP-D-galactose, a substance composed of D-galactose in glycosidic linkage with guanosine diphosphate.
Synonyms: UDP-D-galactopyranose metabolic process; UDP-D-galactopyranose metabolism; UDP-D-galactose metabolism; UDP-galactose metabolic process; UDP-galactose metabolism; uridine diphosphate galactose metabolic process; uridine diphosphate galactose metabolism
UDP-galactose biosynthetic process (GO:0052574)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of UDP-D-galactose, a substance composed of D-galactose in glycosidic linkage with guanosine diphosphate.
Synonyms: UDP-alpha-D-galactose biosynthesis; UDP-D-galactopyranose biosynthesis; UDP-D-galactopyranose biosynthetic process; UDP-D-galactose biosynthesis; UDP-D-galactose biosynthetic process; UDP-galactose biosynthesis; uridine diphosphate galactose biosynthesis; uridine diphosphate galactose biosynthetic process
carbohydrate localization (GO:0052575)
Namespace: biological_process
Definition: Any process in which a carbohydrate is transported to, or maintained in, a specific location. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y.
Synonyms: carbohydrate localisation
carbohydrate storage (GO:0052576)
Namespace: biological_process
Definition: The accumulation and maintenance in cells or tissues of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y.
germacrene-D synthase activity (GO:0052577)
Namespace: molecular_function
Definition: Catalysis of the reaction: (2E,6E)-farnesyl diphosphate = (-)-germacrene D + diphosphate.
Synonyms: (2E,6E)-farnesyl-diphosphate diphosphate-lyase [(-)-germacrene-D-forming] activity
alpha-farnesene synthase activity (GO:0052578)
Namespace: molecular_function
Definition: Catalysis of the reaction: (2E,6E)-farnesyl diphosphate = (3E,6E)-alpha-farnesene + diphosphate.
Synonyms: (E,E)-alpha-farnesene synthase activity
(+)-pulegone reductase (NADP+) activity (GO:0052579)
Namespace: molecular_function
Definition: Catalysis of the reaction: (1R,4S)-menthone + NADP+ = (R)-pulegone + H+ + NADPH. Also converts (2R,5R)-isomenthone into (R)-pulegone.
Synonyms: (+)-isomenthone:NADP+ oxidoreductase activity
obsolete (+)-pulegone reductase, (-)-menthone as substrate, activity (GO:0052580)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: (-)-menthone + NADP+ = (+)-pulegone + NADPH + H+.
Comment: This term was obsoleted because it represents the same substrate as (+)-pulegone reductase (NADP+) activity; GO:0052579.
(-)-isopiperitenone reductase activity (GO:0052581)
Namespace: molecular_function
Definition: Catalysis of the reaction: (6R)-isoperitenone + H+ + NADPH = (2R,5R)-isopulegone + NADP+.
Synonyms: (+)-cis-isopulegone:NADP+ oxidoreductase activity
(+)-menthofuran synthase activity (GO:0052582)
Namespace: molecular_function
Definition: Catalysis of the reaction: (R)-pulegone + reduced [NADPH--hemoprotein reductase] + O2 = (R)-menthofuran + 2 H2O + +H+ + oxidized [NADPH--hemoprotein reductase].
Synonyms: (+)-MFS activity; (+)-pulegone 9-hydroxylase activity; (+)-pulegone,NADPH:oxygen oxidoreductase (9-hydroxylating) activity; cytochrome P450 menthofuran synthase activity; menthofuran synthase activity
obsolete oxidoreductase activity, acting on halogen in donors, with NAD or NADP as acceptor (GO:0052584)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of an oxidation-reduction in which a halogen in the donor substance acts as a hydrogen or electron donor and reduces NAD or NADP.
Comment: This term was obsoleted because EC obsoleted it, and there was no other evidence that this function exists.
obsolete oxidoreductase activity, acting on the CH-NH2 group of donors, with a quinone or similar compound as acceptor (GO:0052585)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH2 group acts as a hydrogen or electron donor and reduces a quinone or similar compound.
Comment: This term was obsoleted because there is no evidence that this specific activity exists.
obsolete oxidoreductase activity, acting on other nitrogenous compounds as donors, with a quinone or similar compound as acceptor (GO:0052586)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of an oxidation-reduction (redox) reaction in which a nitrogenous group, excluding NH and NH2 groups, acts as a hydrogen or electron donor and reduces a quinone or similar compound.
Comment: This term was obsoleted because there is no evidence that this specific activity exists.
diacetyl reductase ((R)-acetoin forming) (NAD+) activity (GO:0052587)
Namespace: molecular_function
Definition: Catalysis of the reaction: (R)-acetoin + NAD+ = diacetyl + H+ + NADH. This reaction is catalyzed in the reverse direction.
Synonyms: (R)-acetoin dehydrogenase activity
diacetyl reductase ((S)-acetoin forming) (NAD+) activity (GO:0052588)
Namespace: molecular_function
Definition: Catalysis of the reaction: (S)-acetoin + NAD+ = diacetyl + H+ + NADH. This reaction is catalyzed in the reverse direction.
Synonyms: (S)-acetoin dehydrogenase activity
obsolete malate dehydrogenase (menaquinone) activity (GO:0052589)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: (S)-malate + a menaquinone = oxaloacetate + a menaquinol.
Comment: This term was obsoleted because it represents the same reaction as malate dehydrogenase (quinone) activity ; GO:0008924, with a different acceptor.
obsolete sn-glycerol-3-phosphate:ubiquinone oxidoreductase activity (GO:0052590)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: sn-glycerol 3-phosphate + a ubiquinone = glycerone phosphate + a ubiquinol.
Comment: This term was obsoleted because it represents a specific substrate for glycerol-3-phosphate dehydrogenase (quinone) activity ; GO:0004368.
obsolete sn-glycerol-3-phosphate:ubiquinone-8 oxidoreductase activity (GO:0052591)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: sn-glycerol 3-phosphate + ubiquinone-8 = glycerone phosphate + ubiquinol-8.
Comment: This term was obsoleted because it represents a specific substrate of glycerol-3-phosphate dehydrogenase (quinone) activity ; GO:0004368.
oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor (GO:0052592)
Namespace: molecular_function
Definition: Catalysis of an oxidation-reduction (redox) reaction in which a CH2 group acts as a hydrogen or electron donor and reduces an iron-sulfur protein.
Synonyms: oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulphur protein as acceptor
obsolete tryptamine:oxygen oxidoreductase (deaminating) activity (GO:0052593)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: tryptamine + H2O + O2 = NH3 + indole acetaldehyde + hydrogen peroxide + H+.
Comment: This term was obsoleted because it represents a specific substrate of primary amine oxidase activity ; GO:0008131.
obsolete aminoacetone:oxygen oxidoreductase(deaminating) activity (GO:0052594)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: aminoacetone + H2O + O2 = methylglyoxal + NH3 + hydrogen peroxide + H+.
Comment: This term was obsoleted because it represents a specific substrate of primary amine oxidase activity ; GO:0008131.
aliphatic amine oxidase activity (GO:0052595)
Namespace: molecular_function
Definition: Catalysis of the reaction: an aliphatic amine + H2O + O2 = an aldehyde + NH4+ + H2O2 + H+.
Synonyms: aliphatic-amine oxidase activity; aliphatic-amine:oxygen oxidoreductase(deaminating) activity
obsolete phenethylamine:oxygen oxidoreductase (deaminating) activity (GO:0052596)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: phenylethylamine + O2 + H2O = phenylacetaldehyde + NH3 + hydrogen peroxide + H+.
Comment: This term was obsoleted because it represents a specific substrate of primary amine oxidase activity ; GO:0008131.
diamine oxidase activity (GO:0052597)
Namespace: molecular_function
Definition: Catalysis of the reaction: a diamine + H2O + O2 = a monoamine + NH4+ + H2O2.
Synonyms: diamine:oxygen oxidoreductase (deaminating) activity
histamine oxidase activity (GO:0052598)
Namespace: molecular_function
Definition: Catalysis of the reaction: H2O + histamine + O2 = H2O2 + imidazole-4-acetaldehyde + NH4+.
Synonyms: 1H-Imidazole-4-ethanamine oxidase activity; 1H-Imidazole-4-ethanamine:oxygen oxidoreductase (deaminating) activity; histamine:oxygen oxidoreductase (deaminating) activity
obsolete methylputrescine oxidase activity (GO:0052599)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: N-methylputrescine + H2O + O2 = N-methylaminobutanal + NH3 + hydrogen peroxide + H+.
Comment: This term was obsoleted because it represents a specific substrate of diamine oxidase activity ; GO:0052597.