LiteFold/GO huggingface dataset:
obsolete vacuolar part (GO:0044437)
Namespace: cellular_component
Definition: OBSOLETE. Any constituent part of a vacuole, a closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material.
Synonyms: vacuole component
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
obsolete microbody part (GO:0044438)
Namespace: cellular_component
Definition: OBSOLETE. Any constituent part of a microbody, a cytoplasmic organelle, spherical or oval in shape, that is bounded by a single membrane and contains oxidative enzymes, especially those utilizing hydrogen peroxide (H2O2).
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
obsolete peroxisomal part (GO:0044439)
Namespace: cellular_component
Definition: OBSOLETE. Any constituent part of a peroxisome, a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules; contains some enzymes that produce and others that degrade hydrogen peroxide (H2O2).
Synonyms: peroxisome component
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
obsolete endosomal part (GO:0044440)
Namespace: cellular_component
Definition: OBSOLETE. Any constituent part of an endosome, a membrane-bounded organelle to which materials ingested by endocytosis are delivered.
Synonyms: endosomal subcomponent; endosome component
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
obsolete ciliary part (GO:0044441)
Namespace: cellular_component
Definition: OBSOLETE. Any constituent part of a cilium, a specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface. Each cilium is bounded by an extrusion of the cytoplasmic (plasma) membrane, and contains a regular longitudinal array of microtubules, anchored basally in a centriole.
Synonyms: cilial part; cilium part; flagellar part; flagellum component; flagellum part; microtubule-based flagellum part
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. Also note that cilia and eukaryotic flagella are deemed to be equivalent.
obsolete pilus part (GO:0044443)
Namespace: cellular_component
Definition: OBSOLETE. Any constituent part of a pilus, a proteinaceous hair-like appendage on the surface of bacteria ranging from 2-8 nm in diameter.
Synonyms: fimbrial part; fimbrium component; pilus component
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
obsolete cytoplasmic part (GO:0044444)
Namespace: cellular_component
Definition: OBSOLETE. Any constituent part of the cytoplasm, all of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Synonyms: cytoplasm component
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
obsolete cytosolic part (GO:0044445)
Namespace: cellular_component
Definition: OBSOLETE. Any constituent part of cytosol, that part of the cytoplasm that does not contain membranous or particulate subcellular components.
Synonyms: cytosol component
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
obsolete intracellular organelle part (GO:0044446)
Namespace: cellular_component
Definition: OBSOLETE. A constituent part of an intracellular organelle, an organized structure of distinctive morphology and function, occurring within the cell. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton but excludes the plasma membrane.
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
obsolete axoneme part (GO:0044447)
Namespace: cellular_component
Definition: OBSOLETE. Any constituent part of an axoneme, the bundle of microtubules and associated proteins that forms the core of cilia (also called flagella) in eukaryotic cells and is responsible for their movements.
Synonyms: axonemal part
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. Also note that cilia and eukaryotic flagella are deemed to be equivalent.
obsolete cell cortex part (GO:0044448)
Namespace: cellular_component
Definition: OBSOLETE. Any constituent part of the cell cortex, the region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins.
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
obsolete contractile fiber part (GO:0044449)
Namespace: cellular_component
Definition: OBSOLETE. Any constituent part of a contractile fiber, a fiber composed of actin, myosin, and associated proteins, found in cells of smooth or striated muscle.
Synonyms: contractile fibre component; muscle fiber component; muscle fibre component
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
obsolete microtubule organizing center part (GO:0044450)
Namespace: cellular_component
Definition: OBSOLETE. Any constituent part of a microtubule organizing center, a region in a eukaryotic cell, such as a centrosome or basal body, from which microtubules grow.
Synonyms: microtubule organizing centre component; MTOC component
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
obsolete nucleoplasm part (GO:0044451)
Namespace: cellular_component
Definition: OBSOLETE. Any constituent part of the nucleoplasm, that part of the nuclear content other than the chromosomes or the nucleolus.
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
obsolete nuclear membrane part (GO:0044453)
Namespace: cellular_component
Definition: OBSOLETE. Any constituent part of the nuclear membrane, the envelope that surrounds the nucleus of eukaryotic cells.
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
obsolete nuclear chromosome part (GO:0044454)
Namespace: cellular_component
Definition: OBSOLETE. Any constituent part of a nuclear chromosome, a chromosome that encodes the nuclear genome and is found in the nucleus of a eukaryotic cell during the cell cycle phases when the nucleus is intact.
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
obsolete mitochondrial membrane part (GO:0044455)
Namespace: cellular_component
Definition: OBSOLETE. Any constituent part of a mitochondrial membrane, either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope.
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
obsolete synapse part (GO:0044456)
Namespace: cellular_component
Definition: OBSOLETE. Any constituent part of a synapse, the junction between a nerve fiber of one neuron and another neuron or muscle fiber or glial cell.
Synonyms: synaptic component
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
obsolete cell septum part (GO:0044457)
Namespace: cellular_component
Definition: OBSOLETE. Any constituent part of a cell septum, a structure composed of peptidoglycan and often chitin in addition to other materials. It usually forms perpendicular to the long axis of a cell or hypha and grows centripetally from the cell wall to the center of the cell and often functions in the compartmentalization of a cell into two daughter cells.
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
motile cilium assembly (GO:0044458)
Namespace: biological_process
Definition: The aggregation, arrangement and bonding together of a set of components to form a motile cilium.
Synonyms: motile primary cilia assembly; motile primary cilia formation; motile primary cilium assembly; motile primary cilium formation; nodal cilium assembly; nodal cilium formation
obsolete plasma membrane part (GO:0044459)
Namespace: cellular_component
Definition: OBSOLETE. Any constituent part of the plasma membrane, the membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
obsolete flagellum part (GO:0044460)
Namespace: cellular_component
Definition: OBSOLETE. Any constituent part of a flagellum, a long whiplike or feathery structure borne either singly or in groups by the motile cells of many bacteria and unicellular eukaryotes and by the motile male gametes of many eukaryotic organisms, which propel the cell through a liquid medium.
Synonyms: flagellum component; flagellum part
Comment: This term was made obsolete because it was an unnecessary grouping term. Eukaryotic flagella were deemed to be equivalent to cilia and merged, so the only remaining child to this term was 'bacterial-type flagellum part ; GO:0044461'.
obsolete bacterial-type flagellum part (GO:0044461)
Namespace: cellular_component
Definition: OBSOLETE. Any constituent part of the bacterial-type flagellum, a 20 nm diameter filament composed of subunits of flagellin driven passively at its base by a motor powered by a transmembrane ion potential, typically a proton or sodium potential.
Synonyms: flagellin-based flagellum part
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
obsolete external encapsulating structure part (GO:0044462)
Namespace: cellular_component
Definition: OBSOLETE. Any constituent part of an external encapsulating structure, a structure that lies outside the plasma membrane and surrounds the entire cell. This does not include the periplasmic space but does include the outer membrane (of gram negative bacteria) or cell wall (of yeast or Gram positive bacteria).
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
obsolete cell part (GO:0044464)
Namespace: cellular_component
Definition: OBSOLETE. Any constituent part of a cell, the basic structural and functional unit of all organisms.
Synonyms: cellular subcomponent; protoplast
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
obsolete modulation of sensory perception of pain in another organism (GO:0044465)
Namespace: biological_process
Definition: OBSOLETE. A process that modulates the frequency, rate or extent of the sensory perception of pain, the series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal, in a different organism.
Synonyms: modulation of sensory perception of pain in other organism; regulation of sensory perception of pain in another organism
Comment: This term was obsoleted because it is too general.
obsolete glutaryl-CoA hydrolase activity (GO:0044466)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: glutaryl-CoA + H2O = CoA + glutarate.
Synonyms: glutaryl-CoA thioesterase activity
Comment: This term was obsoleted because it represents a specific substrate, which is outside the scope of GO.
glial cell-derived neurotrophic factor production (GO:0044467)
Namespace: biological_process
Definition: The regulated release of glial cell line-derived neurotrophic factor from a cell. Glial cell-derived neurotrophic factor (GDNF) is a small protein that potently promotes the survival of many types of neurons, notably dopaminergic and motor neurons.
Synonyms: GDNF production; glial cell line-derived neurotrophic factor production; glial cell-derived neurotrophic factor secretion
venom-mediated perturbation of blood coagulation (GO:0044468)
Namespace: biological_process
Definition: A process in which an organism alters or subverts blood coagulation in another organism via the action of a venom.
Synonyms: envenomation perturbing blood coagulation; envenomation resulting in modulation of blood coagulation in another organism; envenomation resulting in modulation of blood coagulation in other organism; envenomation resulting in perturbation of blood coagulation; envenomation resulting in regulation of blood coagulation in other organism
venom-mediated blood coagulation (GO:0044469)
Namespace: biological_process
Definition: A process in which an organism initiates, promotes, or enhances blood coagulation in another organism via the action of a venom.
Synonyms: envenomation promoting blood coagulation; envenomation resulting in positive regulation of blood coagulation in another organism; envenomation resulting in positive regulation of blood coagulation in other organism
venom-mediated suppression of blood coagulation (GO:0044470)
Namespace: biological_process
Definition: A process in which an organism inhibits or disrupts blood coagulation in another organism via the action of a venom.
Synonyms: envenomation resulting in negative regulation of blood coagulation in another organism; envenomation resulting in negative regulation of blood coagulation in other organism; envenomation suppressing blood coagulation
venom-mediated pore formation in membrane of another organism (GO:0044471)
Namespace: biological_process
Definition: A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the aggregation, arrangement and bonding together of a set of components to form a pore complex in a membrane of the bitten organism.
Synonyms: envenomation resulting in pore formation in membrane of another organism; envenomation resulting in pore formation in membrane of other organism
venom-mediated perturbation of calcium channel activity (GO:0044472)
Namespace: biological_process
Definition: A process in which an organism alters or subverts the activity of a calcium channel in another organism via the action of a venom.
Synonyms: envenomation resulting in modulation of calcium channel activity in another organism; envenomation resulting in modulation of calcium channel activity in other organism
venom-mediated inhibition of calcium channel activity (GO:0044473)
Namespace: biological_process
Definition: A process in which an organism inhibits or disrupts the activity of a calcium channel in another organism via the action of a venom.
Synonyms: envenomation resulting in negative regulation of calcium channel activity in another organism; envenomation resulting in negative regulation of calcium channel activity in other organism
venom-mediated inhibition of voltage-gated calcium channel activity (GO:0044474)
Namespace: biological_process
Definition: A process in which an organism inhibits or disrupts the activity of a voltage-gated calcium channel in another organism via the action of a venom.
Synonyms: envenomation resulting in negative regulation of voltage-gated calcium channel activity in another organism; envenomation resulting in negative regulation of voltage-gated calcium channel activity in other organism
venom-mediated inhibition of high voltage-gated calcium channel activity (GO:0044475)
Namespace: biological_process
Definition: A process in which an organism inhibits or disrupts the activity of a high voltage-gated calcium channel in another organism via the action of a venom.
Synonyms: envenomation resulting in negative regulation of high voltage-gated calcium channel activity in another organism; envenomation resulting in negative regulation of high voltage-gated calcium channel activity in other organism
venom-mediated inhibition of low voltage-gated calcium channel activity (GO:0044476)
Namespace: biological_process
Definition: A process in which an organism inhibits or disrupts the activity of a low voltage-gated calcium channel in another organism via the action of a venom.
Synonyms: envenomation resulting in negative regulation of low voltage-gated calcium channel activity in another organism; envenomation resulting in negative regulation of low voltage-gated calcium channel activity in other organism
venom-mediated suppression of platelet aggregation (GO:0044477)
Namespace: biological_process
Definition: A process in which an organism inhibits or disrupts platelet aggregation in another organism via the action of a venom.
Synonyms: envenomation resulting in negative regulation of platelet aggregation in another organism; envenomation resulting in negative regulation of platelet aggregation in other organism; envenomation suppressing platelet aggregation; venom-mediated suppression of platelet agglutination; venom-mediated suppression of thrombocyte aggregation
venom-mediated platelet aggregation (GO:0044478)
Namespace: biological_process
Definition: A process in which an organism initiates, promotes, or enhances platelet aggregation in another organism via the action of a venom.
Synonyms: envenomation promoting platelet aggregation; envenomation resulting in positive regulation of platelet aggregation in another organism; envenomation resulting in positive regulation of platelet aggregation in other organism; venom-mediated platelet agglutination
venom-mediated perturbation of mast cell degranulation (GO:0044479)
Namespace: biological_process
Definition: A process in which an organism alters or subverts mast cell degranulation in another organism via the action of a venom.
Synonyms: envenomation resulting in modulation of mast cell degranulation in another organism; envenomation resulting in modulation of mast cell degranulation in other organism
venom-mediated mast cell degranulation (GO:0044480)
Namespace: biological_process
Definition: A process in which an organism initiates, promotes, or enhances mast cell degranulation in another organism via the action of a venom.
Synonyms: envenomation resulting in positive regulation of mast cell degranulation in another organism; envenomation resulting in positive regulation of mast cell degranulation in other organism
obsolete envenomation resulting in proteolysis in another organism (GO:0044481)
Namespace: biological_process
Definition: OBSOLETE. A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant hydrolysis of proteins in of the bitten organism.
Synonyms: envenomation resulting in proteolysis in other organism
Comment: This term was obsoleted because it represents a molecular function.
obsolete envenomation resulting in blood vessel extracellular matrix damage, causing hemorrhagic damage in another organism (GO:0044482)
Namespace: biological_process
Definition: OBSOLETE. A process that begins with venom being forced into an organism by the bite or sting of another organism which causes damage to the extracellular matrix of the blood vessels of the bitten organism, ultimately resulting in hemorrhage in the bitten organism.
Synonyms: envenomation resulting in blood vessel ECM, causing hemorrhagic damage in other organism; envenomation resulting in blood vessel extracellular matrix damage, causing hemorrhagic damage in other organism
Comment: This term was obsoleted because it represents a GO-CAM model.
venom-mediated perturbation of hemostasis (GO:0044483)
Namespace: biological_process
Definition: A process in which an organism alters or subverts hemostasis in another organism via the action of a venom. Hemostasis is the mechanism that leads to cessation of bleeding from a blood vessel.
Synonyms: envenomation perturbing hemostasis; envenomation resulting in impairment of hemostasis in another organism; envenomation resulting in impairment of hemostasis in other organism; envenomation resulting in negative regulation of hemostasis in other organism; envenomation, impairing hemostasis in other organism