LiteFold/GO huggingface dataset:
lipooligosaccharide biosynthetic process (GO:1901271)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of lipooligosaccharide.
Synonyms: lipooligosaccharide anabolism; lipooligosaccharide biosynthesis; lipooligosaccharide formation; lipooligosaccharide synthesis
obsolete 2-dehydro-3-deoxy-D-gluconic acid metabolic process (GO:1901272)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving 2-dehydro-3-deoxy-D-gluconic acid.
Synonyms: 2-dehydro-3-deoxy-D-gluconic acid metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
2-dehydro-3-deoxy-D-gluconic acid catabolic process (GO:1901273)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of 2-dehydro-3-deoxy-D-gluconic acid.
Synonyms: 2-dehydro-3-deoxy-D-gluconic acid breakdown; 2-dehydro-3-deoxy-D-gluconic acid catabolism; 2-dehydro-3-deoxy-D-gluconic acid degradation
2-dehydro-3-deoxy-D-gluconic acid biosynthetic process (GO:1901274)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of 2-dehydro-3-deoxy-D-gluconic acid.
Synonyms: 2-dehydro-3-deoxy-D-gluconic acid anabolism; 2-dehydro-3-deoxy-D-gluconic acid biosynthesis; 2-dehydro-3-deoxy-D-gluconic acid formation; 2-dehydro-3-deoxy-D-gluconic acid synthesis
tartrate metabolic process (GO:1901275)
Namespace: biological_process
Definition: The chemical reactions and pathways involving tartrate.
Synonyms: tartrate metabolism
tartrate catabolic process (GO:1901276)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of tartrate.
Synonyms: tartrate breakdown; tartrate catabolism; tartrate degradation
tartrate biosynthetic process (GO:1901277)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of tartrate.
Synonyms: tartrate anabolism; tartrate biosynthesis; tartrate formation; tartrate synthesis
obsolete D-ribose 5-phosphate metabolic process (GO:1901278)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving D-ribose 5-phosphate.
Synonyms: D-ribose 5-phosphate metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
D-ribose 5-phosphate catabolic process (GO:1901279)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of D-ribose 5-phosphate.
Synonyms: D-ribose 5-phosphate breakdown; D-ribose 5-phosphate catabolism; D-ribose 5-phosphate degradation
D-ribose 5-phosphate biosynthetic process (GO:1901280)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of D-ribose 5-phosphate.
Synonyms: D-ribose 5-phosphate anabolism; D-ribose 5-phosphate biosynthesis; D-ribose 5-phosphate formation; D-ribose 5-phosphate synthesis
fructoselysine catabolic process (GO:1901281)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of fructoselysine.
Synonyms: fructosyllysine breakdown; fructosyllysine catabolic process; fructosyllysine catabolism; fructosyllysine degradation
fructoselysine biosynthetic process (GO:1901282)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of fructoselysine.
Synonyms: fructosyllysine anabolism; fructosyllysine biosynthesis; fructosyllysine biosynthetic process; fructosyllysine formation; fructosyllysine synthesis
obsolete 5,6,7,8-tetrahydromethanopterin metabolic process (GO:1901283)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving 5,6,7,8-tetrahydromethanopterin.
Synonyms: 5,6,7,8-tetrahydromethanopterin metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
5,6,7,8-tetrahydromethanopterin catabolic process (GO:1901284)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of 5,6,7,8-tetrahydromethanopterin.
Synonyms: 5,6,7,8-tetrahydromethanopterin breakdown; 5,6,7,8-tetrahydromethanopterin catabolism; 5,6,7,8-tetrahydromethanopterin degradation
5,6,7,8-tetrahydromethanopterin biosynthetic process (GO:1901285)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of 5,6,7,8-tetrahydromethanopterin.
Synonyms: 5,6,7,8-tetrahydromethanopterin anabolism; 5,6,7,8-tetrahydromethanopterin biosynthesis; 5,6,7,8-tetrahydromethanopterin formation; 5,6,7,8-tetrahydromethanopterin synthesis
iron-sulfur-molybdenum cofactor metabolic process (GO:1901286)
Namespace: biological_process
Definition: The chemical reactions and pathways involving iron-sulfur-molybdenum cofactor.
Synonyms: FeMo-co metabolic process; FeMo-co metabolism; iron-molybdenum cofactor metabolic process; iron-molybdenum cofactor metabolism; iron-sulfur-molybdenum cofactor metabolism
iron-sulfur-molybdenum cofactor catabolic process (GO:1901287)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of iron-sulfur-molybdenum cofactor.
Synonyms: FeMo-co breakdown; FeMo-co catabolic process; FeMo-co catabolism; FeMo-co degradation; iron-molybdenum breakdown; iron-molybdenum catabolic process; iron-molybdenum catabolism; iron-molybdenum degradation; iron-sulfur-molybdenum cofactor breakdown; iron-sulfur-molybdenum cofactor catabolism; iron-sulfur-molybdenum cofactor degradation
iron-sulfur-molybdenum cofactor biosynthetic process (GO:1901288)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of iron-sulfur-molybdenum cofactor.
Synonyms: FeMo-co anabolism; FeMo-co biosynthesis; FeMo-co biosynthetic process; FeMo-co formation; FeMo-co synthesis; iron-molybdenum cofactor anabolism; iron-molybdenum cofactor biosynthesis; iron-molybdenum cofactor biosynthetic process; iron-molybdenum cofactor formation; iron-molybdenum cofactor synthesis; iron-sulfur-molybdenum cofactor anabolism; iron-sulfur-molybdenum cofactor biosynthesis; iron-sulfur-molybdenum cofactor formation; iron-sulfur-molybdenum cofactor synthesis
succinyl-CoA catabolic process (GO:1901289)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of succinyl-CoA.
Synonyms: succinyl-CoA breakdown; succinyl-CoA catabolism; succinyl-CoA degradation
succinyl-CoA biosynthetic process (GO:1901290)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of succinyl-CoA.
Synonyms: succinyl-CoA anabolism; succinyl-CoA biosynthesis; succinyl-CoA formation; succinyl-CoA synthesis
negative regulation of double-strand break repair via single-strand annealing (GO:1901291)
Namespace: biological_process
Definition: Any process that stops, prevents or reduces the frequency, rate or extent of double-strand break repair via single-strand annealing.
Synonyms: down regulation of double-strand break repair via single-strand annealing; down-regulation of double-strand break repair via single-strand annealing; downregulation of double-strand break repair via single-strand annealing; inhibition of double-strand break repair via single-strand annealing
nucleoside phosphate catabolic process (GO:1901292)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of a nucleoside phosphate.
Synonyms: nucleoside phosphate breakdown; nucleoside phosphate catabolism; nucleoside phosphate degradation
nucleoside phosphate biosynthetic process (GO:1901293)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of a nucleoside phosphate.
Synonyms: nucleoside phosphate anabolism; nucleoside phosphate biosynthesis; nucleoside phosphate formation; nucleoside phosphate synthesis
obsolete negative regulation of SREBP signaling pathway by negative regulation of DNA binding (GO:1901294)
Namespace: biological_process
Definition: OBSOLETE. Negative regulation of DNA binding that results in negative regulation of a SREBP signaling pathway.
Synonyms: inhibition of SREBP-dependent transcription by blocking DNA binding; negative regulation of SREBP signaling pathway by down regulation of DNA binding; negative regulation of SREBP signaling pathway by down-regulation of DNA binding; negative regulation of SREBP signaling pathway by downregulation of DNA binding; negative regulation of SREBP signaling pathway by inhibition of DNA binding; negative regulation of SREBP-mediated signaling pathway by down regulation of DNA binding; negative regulation of SREBP-mediated signaling pathway by down-regulation of DNA binding; negative regulation of SREBP-mediated signaling pathway by downregulation of DNA binding; negative regulation of SREBP-mediated signaling pathway by inhibition of DNA binding; negative regulation of SREBP-mediated signaling pathway by negative regulation of DNA binding; negative regulation of SREBP-mediated signalling pathway by down regulation of DNA binding; negative regulation of SREBP-mediated signalling pathway by down-regulation of DNA binding; negative regulation of SREBP-mediated signalling pathway by downregulation of DNA binding; negative regulation of SREBP-mediated signalling pathway by inhibition of DNA binding; negative regulation of SREBP-mediated signalling pathway by negative regulation of DNA binding
Comment: The reason for obsoletion is that this term should be represented by a GO-CAM model.
obsolete regulation of canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment (GO:1901295)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment.
Synonyms: regulation of canonical Wnt receptor signaling pathway involved in cardiac muscle cell fate commitment; regulation of canonical Wnt receptor signalling pathway involved in cardiac muscle cell fate commitment; regulation of canonical Wnt-activated signaling pathway involved in cardiac muscle cell fate commitment
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete negative regulation of canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment (GO:1901296)
Namespace: biological_process
Definition: OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment.
Synonyms: down regulation of canonical Wnt receptor signaling pathway involved in cardiac muscle cell fate commitment; down regulation of canonical Wnt receptor signalling pathway involved in cardiac muscle cell fate commitment; down-regulation of canonical Wnt receptor signaling pathway involved in cardiac muscle cell fate commitment; down-regulation of canonical Wnt receptor signalling pathway involved in cardiac muscle cell fate commitment; downregulation of canonical Wnt receptor signaling pathway involved in cardiac muscle cell fate commitment; downregulation of canonical Wnt receptor signalling pathway involved in cardiac muscle cell fate commitment; inhibition of canonical Wnt receptor signaling pathway involved in cardiac muscle cell fate commitment; inhibition of canonical Wnt receptor signalling pathway involved in cardiac muscle cell fate commitment; negative regulation of canonical Wnt receptor signaling pathway involved in cardiac muscle cell fate commitment; negative regulation of canonical Wnt receptor signalling pathway involved in cardiac muscle cell fate commitment; negative regulation of canonical Wnt-activated signaling pathway involved in cardiac muscle cell fate commitment
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete positive regulation of canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment (GO:1901297)
Namespace: biological_process
Definition: OBSOLETE. Any process that activates or increases the frequency, rate or extent of canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment.
Synonyms: activation of canonical Wnt receptor signaling pathway involved in cardiac muscle cell fate commitment; activation of canonical Wnt receptor signalling pathway involved in cardiac muscle cell fate commitment; positive regulation of canonical Wnt receptor signaling pathway involved in cardiac muscle cell fate commitment; positive regulation of canonical Wnt receptor signalling pathway involved in cardiac muscle cell fate commitment; positive regulation of canonical Wnt-activated signaling pathway involved in cardiac muscle cell fate commitment; up regulation of canonical Wnt receptor signaling pathway involved in cardiac muscle cell fate commitment; up regulation of canonical Wnt receptor signalling pathway involved in cardiac muscle cell fate commitment; up-regulation of canonical Wnt receptor signaling pathway involved in cardiac muscle cell fate commitment; up-regulation of canonical Wnt receptor signalling pathway involved in cardiac muscle cell fate commitment; upregulation of canonical Wnt receptor signaling pathway involved in cardiac muscle cell fate commitment; upregulation of canonical Wnt receptor signalling pathway involved in cardiac muscle cell fate commitment
Comment: This term was obsoleted because it represents a GO-CAM model.
regulation of hydrogen peroxide-mediated programmed cell death (GO:1901298)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of hydrogen peroxide-mediated programmed cell death.
negative regulation of hydrogen peroxide-mediated programmed cell death (GO:1901299)
Namespace: biological_process
Definition: Any process that stops, prevents or reduces the frequency, rate or extent of hydrogen peroxide-mediated programmed cell death.
Synonyms: down regulation of hydrogen peroxide-mediated programmed cell death; down-regulation of hydrogen peroxide-mediated programmed cell death; downregulation of hydrogen peroxide-mediated programmed cell death; inhibition of hydrogen peroxide-mediated programmed cell death
positive regulation of hydrogen peroxide-mediated programmed cell death (GO:1901300)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of hydrogen peroxide-mediated programmed cell death.
Synonyms: activation of hydrogen peroxide-mediated programmed cell death; up regulation of hydrogen peroxide-mediated programmed cell death; up-regulation of hydrogen peroxide-mediated programmed cell death; upregulation of hydrogen peroxide-mediated programmed cell death
regulation of cargo loading into COPII-coated vesicle (GO:1901301)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of cargo loading into COPII-coated vesicle.
Synonyms: regulation of cargo loading into COPII vesicle; regulation of cargo selection into COPII-coated vesicle; regulation of COPII coat-cargo complex assembly
negative regulation of spermidine biosynthetic process (GO:1901305)
Namespace: biological_process
Definition: Any process that stops, prevents or reduces the frequency, rate or extent of spermidine biosynthetic process.
Synonyms: down regulation of spermidine anabolism; down regulation of spermidine biosynthesis; down regulation of spermidine biosynthetic process; down regulation of spermidine formation; down regulation of spermidine synthesis; down-regulation of spermidine anabolism; down-regulation of spermidine biosynthesis; down-regulation of spermidine biosynthetic process; down-regulation of spermidine formation; down-regulation of spermidine synthesis; downregulation of spermidine anabolism; downregulation of spermidine biosynthesis; downregulation of spermidine biosynthetic process; downregulation of spermidine formation; downregulation of spermidine synthesis; inhibition of spermidine anabolism; inhibition of spermidine biosynthesis; inhibition of spermidine biosynthetic process; inhibition of spermidine formation; inhibition of spermidine synthesis; negative regulation of spermidine anabolism; negative regulation of spermidine biosynthesis; negative regulation of spermidine formation; negative regulation of spermidine synthesis
positive regulation of spermidine biosynthetic process (GO:1901307)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of spermidine biosynthetic process.
Synonyms: activation of spermidine anabolism; activation of spermidine biosynthesis; activation of spermidine biosynthetic process; activation of spermidine formation; activation of spermidine synthesis; positive regulation of spermidine anabolism; positive regulation of spermidine biosynthesis; positive regulation of spermidine formation; positive regulation of spermidine synthesis; up regulation of spermidine anabolism; up regulation of spermidine biosynthesis; up regulation of spermidine biosynthetic process; up regulation of spermidine formation; up regulation of spermidine synthesis; up-regulation of spermidine anabolism; up-regulation of spermidine biosynthesis; up-regulation of spermidine biosynthetic process; up-regulation of spermidine formation; up-regulation of spermidine synthesis; upregulation of spermidine anabolism; upregulation of spermidine biosynthesis; upregulation of spermidine biosynthetic process; upregulation of spermidine formation; upregulation of spermidine synthesis
obsolete regulation of sterol regulatory element binding protein cleavage (GO:1901308)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of sterol regulatory element binding protein cleavage.
Synonyms: regulation of SREBP cleavage
Comment: This term was obsoleted because it represents a molecular function.
obsolete negative regulation of sterol regulatory element binding protein cleavage (GO:1901309)
Namespace: biological_process
Definition: OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of sterol regulatory element binding protein cleavage.
Synonyms: down regulation of SREBP cleavage; down regulation of sterol regulatory element binding protein cleavage; down-regulation of SREBP cleavage; down-regulation of sterol regulatory element binding protein cleavage; downregulation of SREBP cleavage; downregulation of sterol regulatory element binding protein cleavage; inhibition of SREBP cleavage; inhibition of SREBP processing; inhibition of sterol regulatory element binding protein cleavage; negative regulation of SREBP cleavage
Comment: This term was obsoleted because it represents a molecular function.
obsolete positive regulation of sterol regulatory element binding protein cleavage (GO:1901310)
Namespace: biological_process
Definition: OBSOLETE. Any process that activates or increases the frequency, rate or extent of sterol regulatory element binding protein cleavage.
Synonyms: activation of SREBP cleavage; activation of sterol regulatory element binding protein cleavage; positive regulation of SREBP cleavage; up regulation of SREBP cleavage; up regulation of sterol regulatory element binding protein cleavage; up-regulation of SREBP cleavage; up-regulation of sterol regulatory element binding protein cleavage; upregulation of SREBP cleavage; upregulation of sterol regulatory element binding protein cleavage
Comment: This term was obsoleted because it represents a molecular function.
obsolete regulation of gene expression involved in extracellular matrix organization (GO:1901311)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of gene expression involved in extracellular matrix organization.
Synonyms: regulation of expression of extracellular matrix proteins; regulation of extracellular matrix protein production
Comment: This term was made obsolete is that in these terms the 'involved in' process is not truly involved_in (i.e. part_of) the process but instead is causally upstream of it. We advise replacing annotations to these terms with annotations + extensions using the causally_upstream_of relation e.g. P1234 regulation of gene expression [causally_upstream_of] extracellular matrix organization.
obsolete negative regulation of gene expression involved in extracellular matrix organization (GO:1901312)
Namespace: biological_process
Definition: OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of gene expression involved in extracellular matrix organization.
Synonyms: down regulation of expression of extracellular matrix proteins; down regulation of extracellular matrix protein production; down regulation of gene expression involved in extracellular matrix organization; down-regulation of expression of extracellular matrix proteins; down-regulation of extracellular matrix protein production; down-regulation of gene expression involved in extracellular matrix organization; downregulation of expression of extracellular matrix proteins; downregulation of extracellular matrix protein production; downregulation of gene expression involved in extracellular matrix organization; inhibition of expression of extracellular matrix proteins; inhibition of extracellular matrix protein production; inhibition of gene expression involved in extracellular matrix organization; negative regulation of expression of extracellular matrix proteins; negative regulation of extracellular matrix protein production
Comment: This term was made obsolete is that in these terms the 'involved in' process is not truly involved_in (i.e. part_of) the process but instead is causally upstream of it. We advise replacing annotations to these terms with annotations + extensions using the causally_upstream_of relation e.g. P1234 regulation of gene expression [causally_upstream_of] extracellular matrix organization.
obsolete positive regulation of gene expression involved in extracellular matrix organization (GO:1901313)
Namespace: biological_process
Definition: OBSOLETE. Any process that activates or increases the frequency, rate or extent of gene expression involved in extracellular matrix organization.
Synonyms: activation of expression of extracellular matrix proteins; activation of extracellular matrix protein production; activation of gene expression involved in extracellular matrix organization; positive regulation of expression of extracellular matrix proteins; positive regulation of extracellular matrix protein production; up regulation of expression of extracellular matrix proteins; up regulation of extracellular matrix protein production; up regulation of gene expression involved in extracellular matrix organization; up-regulation of expression of extracellular matrix proteins; up-regulation of extracellular matrix protein production; up-regulation of gene expression involved in extracellular matrix organization; upregulation of expression of extracellular matrix proteins; upregulation of extracellular matrix protein production; upregulation of gene expression involved in extracellular matrix organization
Comment: This term was made obsolete is that in these terms the 'involved in' process is not truly involved_in (i.e. part_of) the process but instead is causally upstream of it. We advise replacing annotations to these terms with annotations + extensions using the causally_upstream_of relation e.g. P1234 regulation of gene expression [causally_upstream_of] extracellular matrix organization.
obsolete regulation of histone H2A K63-linked ubiquitination (GO:1901314)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of histone H2A K63-linked ubiquitination.
Comment: This term was obsoleted because it represents a molecular function.