LiteFold/GO huggingface dataset:
dibenzo-p-dioxin metabolic process (GO:0018894)
Namespace: biological_process
Definition: The chemical reactions and pathways involving dibenzo-p-dioxin, a substance composed of two benzene rings linked by two ether bonds. Dibenzo-p-dioxins are generated as by-products in the manufacturing of herbicides, insecticides, fungicides, paper pulp bleaching, and in incineration, and can accumulate in milk and throughout the food chain, creating significant health concern.
Synonyms: dibenzo-p-dioxin metabolism; oxanthrene metabolic process; oxanthrene metabolism; phenodioxin metabolic process; phenodioxin metabolism
obsolete dibenzothiophene metabolic process (GO:0018895)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving dibenzothiophene, a substance composed of two benzene rings linked by one sulfide bond and one carbon-carbon bond. Dibenzothiophene derivatives can be detected in diesel oil following hydrodesulfurization treatment to remove sulfur compounds that would otherwise generate sulfur oxides during combustion.
Synonyms: dibenzothiophene metabolism; diphenylene sulfide metabolic process; diphenylene sulfide metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
dibenzothiophene catabolic process (GO:0018896)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of dibenzothiophene, a substance composed of two benzene rings linked by one sulfide bond and one carbon-carbon bond.
Synonyms: dibenzothiophene breakdown; dibenzothiophene catabolism; dibenzothiophene degradation; dibenzothiophene desulfurization
obsolete dibenzothiophene desulfurization (GO:0018897)
Namespace: biological_process
Definition: OBSOLETE. The removal of the sulfur atom from dibenzothiophene, a substance composed of two benzene rings linked by one sulfide bond and one carbon-carbon bond.
Synonyms: dibenzothiophene desulphurization
Comment: The reason for obsoletion is that this term describes the same pathway as dibenzothiophene catabolic process.
obsolete 2,4-dichlorobenzoate metabolic process (GO:0018898)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving 2,4-dichlorobenzoate, a chlorinated aromatic compound which is a key intermediate in the aerobic degradation of polychlorinated biphenyls (PCBs).
Synonyms: 2,4-dichlorobenzoate metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
obsolete 1,2-dichloroethane metabolic process (GO:0018899)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving 1,2-dichloroethane, a major commodity chemical used, for example, in the manufacture of vinyl chloride.
Synonyms: 1,2-dichloroethane metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
dichloromethane metabolic process (GO:0018900)
Namespace: biological_process
Definition: The chemical reactions and pathways involving dichloromethane, a dichlorinated derivative of methane. It is a colorless organic liquid with a sweet, chloroform-like odor, often used as a paint remover.
Synonyms: dichloromethane metabolism
2,4-dichlorophenoxyacetic acid metabolic process (GO:0018901)
Namespace: biological_process
Definition: The chemical reactions and pathways involving 2,4-dichlorophenoxyacetic acid, a chlorinated phenoxy compound which functions as a systemic herbicide and is used to control many types of broadleaf weeds.
Synonyms: 2,4-D metabolic process; 2,4-D metabolism; 2,4-dichlorophenoxyacetic acid metabolism
obsolete 1,3-dichloro-2-propanol metabolic process (GO:0018902)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving 1,3-dichloro-2-propanol (DCP), a halohydrin suspected of being carcinogenic, mutagenic and genotoxic. DCP is used as a general solvent, as an intermediate in organic synthesis and in paints, varnishes, lacquers, water colors, binders and photographic lacquers.
Synonyms: 1,3-dichloro-2-propanol metabolism; DCP metabolic process; DCP metabolism
Comment: 1,3-dichloro-2-propanol is not a natural compound.
1,3-dichloropropene metabolic process (GO:0018903)
Namespace: biological_process
Definition: The chemical reactions and pathways involving members of the 1,3-dichloropropene family, which includes cis- and trans-1,3-dichloropropene. The 1,3-dichloropropenes are chlorinated hydrocarbons and the major active ingredients of commercial products for control of plant-parasitic nematodes.
Synonyms: 1,3-dichloropropene metabolism; 1,3-dichloropropylene metabolic process; 1,3-dichloropropylene metabolism; gamma-chloroallylchloride metabolic process; gamma-chloroallylchloride metabolism
dimethyl ether metabolic process (GO:0018905)
Namespace: biological_process
Definition: The chemical reactions and pathways involving dimethyl ether, CH3-O-CH3, the simplest ether. Dimethyl ether, also known wood ether and methyl ether, is a colorless gas that has been used in refrigeration applications.
Synonyms: dimethyl ether metabolism; methyl ether metabolic process; methyl ether metabolism
methyl tert-butyl ether metabolic process (GO:0018906)
Namespace: biological_process
Definition: The chemical reactions and pathways involving methyl tert-butyl ether, 2-methoxy-2-methylpropane. Methyl tert-butyl ether is a synthetic chemical which is mixed with gasoline for use in reformulated gasoline. It was first introduced as an additive for unleaded gasoline in the 1980s. It is also used as a laboratory reagent and a pharmaceutical agent.
Synonyms: methyl tert-butyl ether metabolism
dimethyl sulfoxide metabolic process (GO:0018907)
Namespace: biological_process
Definition: The chemical reactions and pathways involving dimethyl sulfoxide, DMSO (C2H6OS), an alkyl sulfoxide that is practically odorless in its purified form. As a highly polar organic liquid, it is a powerful solvent. Its biological activities include the ability to penetrate plant and animal tissues and to preserve living cells during freezing.
Synonyms: dimethyl sulfoxide metabolism; dimethyl sulphoxide metabolic process; dimethyl sulphoxide metabolism; DMSO metabolic process; DMSO metabolism
obsolete organosulfide cycle (GO:0018908)
Namespace: biological_process
Definition: OBSOLETE. A cyclic series of interconversions involving dimethyl sulfide, methanethiol and hydrogen sulfide. Dimethylsulfoxide can also be converted to dimethyl sulfide, which enters the cycle.
Synonyms: organosulphide cycle
Comment: This term was obsoleted because it corresponds to a detoxification process; consider annotating to cellular detoxification ; GO:1990748.
dodecyl sulfate metabolic process (GO:0018909)
Namespace: biological_process
Definition: The chemical reactions and pathways involving dodecyl sulfate, commonly found as sodium dodecyl sulfate (SDS), a component of a variety of synthetic surfactants.
Synonyms: dodecyl sulfate metabolism; dodecyl sulphate metabolic process; dodecyl sulphate metabolism
benzene metabolic process (GO:0018910)
Namespace: biological_process
Definition: The chemical reactions and pathways involving benzene, C6H6, a volatile, very inflammable liquid, contained in the naphtha produced by the destructive distillation of coal, from which it is separated by fractional distillation.
Synonyms: benzene metabolism
1,2,4-trichlorobenzene catabolic process (GO:0018911)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of 1,2,4-trichlorobenzene, a derivative of benzene with chlorine atoms attached to positions 1, 2 and 4 of the ring. It is a colorless liquid used as a solvent in chemical manufacturing, in dyes and intermediates, dielectric fluid, synthetic transformer oils, lubricants, heat-transfer medium and insecticides.
Synonyms: 1,2,4-trichlorobenzene metabolic process; 1,2,4-trichlorobenzene metabolism
obsolete anaerobic ethylbenzene metabolic process (GO:0018913)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving ethylbenzene (phenylethane), a benzene derivative with an ethyl group attached to the ring, that occur in the absence of oxygen.
Synonyms: anaerobic ethylbenzene metabolism
Comment: The reason for obsoletion is that this term is an unnecessary grouping term. The chemical is not naturally made by any organism.
chlorobenzene catabolic process (GO:0018914)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of chlorobenzene, a derivative of benzene with a chlorine atoms attached to the ring. It is a colorless liquid that is manufactured for use as a solvent. It quickly evaporates in the air and is degraded by hydroxyl radicals that are produced photochemically. The gas acts as a source of ClOx, which helps in the breakdown of stratospheric ozone.
Synonyms: chlorobenzene metabolic process; chlorobenzene metabolism
ethylbenzene catabolic process (GO:0018915)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of ethylbenzene (phenylethane), a benzene derivative with an ethyl group attached to the ring. It is a colorless liquid with a pungent odor used as a solvent and as a component of automotive and aviation fuels.
Synonyms: ethylbenzene metabolic process; ethylbenzene metabolism
nitrobenzene metabolic process (GO:0018916)
Namespace: biological_process
Definition: The chemical reactions and pathways involving nitrobenzene (nitrobenzol), a derivative of benzene with an NO2 group attached to the ring. It is a yellow aromatic liquid used in perfumery and manufactured in large quantities in the preparation of aniline.
Synonyms: nitrobenzene metabolism
gamma-1,2,3,4,5,6-hexachlorocyclohexane metabolic process (GO:0018919)
Namespace: biological_process
Definition: The chemical reactions and pathways involving gamma-1,2,3,4,5,6-hexachlorocyclohexane (also known as Lindane), the most common form of hexachlorohexane, a halogenated organic insecticide that has been used worldwide for agriculture and public health.
Synonyms: gamma-1,2,3,4,5,6-hexachlorocyclohexane metabolism
glyphosate metabolic process (GO:0018920)
Namespace: biological_process
Definition: The chemical reactions and pathways involving glyphosate, a broad-spectrum herbicide also known by the trade name Roundup. It is a member of a broad class of compounds known as phosphonic acids, which contain a direct carbon-to-phosphorus (C-P) bond.
Synonyms: glyphosate metabolism; Roundup metabolic process; Roundup metabolism
3-hydroxybenzyl alcohol metabolic process (GO:0018921)
Namespace: biological_process
Definition: The chemical reactions and pathways involving 3-hydroxybenzyl alcohol, an aromatic compound which is an intermediate in several metabolic pathways, including the biosynthesis of patulin, a toxin and antiviral agent produced by some moulds such as Penicillium patulinum.
Synonyms: 3-hydroxybenzyl alcohol metabolism
iprodione metabolic process (GO:0018922)
Namespace: biological_process
Definition: The chemical reactions and pathways involving prodione, a colorless, odorless crystal. It is used as a dicarboximide contact fungicide to control a wide variety of crop diseases by inhibiting the germination of spores and the growth of the fungal mat (mycelium).
Synonyms: iprodione metabolism
obsolete limonene metabolic process (GO:0018923)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving limonene (4-isopropenyl-1-methyl-cyclohexene), a monocyclic monoterpene.
Synonyms: limonene metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
mandelate metabolic process (GO:0018924)
Namespace: biological_process
Definition: The chemical reactions and pathways involving mandelate, the anion of mandelic acid. Mandelic acid (alpha-hydroxybenzeneacetic acid) is an 8-carbon alpha-hydroxy acid (AHA) that is used in organic chemistry and as a urinary antiseptic.
Synonyms: mandelate metabolism; mandelic acid metabolic process; mandelic acid metabolism
obsolete m-cresol metabolic process (GO:0018925)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving m-cresol (3-hydroxytoluene), the meta-isoform of cresol. Used to produce agricultural chemicals, and in specialty resins, pharmaceuticals and pressure-sensitive dyes.
Synonyms: 3-hydroxytoluene metabolic process; 3-hydroxytoluene metabolism; m-cresol metabolism; meta-cresol metabolic process; meta-cresol metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
methanesulfonic acid metabolic process (GO:0018926)
Namespace: biological_process
Definition: The chemical reactions and pathways involving methanesulfonic acid, a strong acid produced by the oxidation of dimethyl sulfide.
Synonyms: methanesulfonic acid metabolism; methanesulphonic acid metabolic process; methanesulphonic acid metabolism
obsolete methionine and threonine metabolic process (GO:0018927)
Namespace: biological_process
Definition: OBSOLETE. (Was not defined before being made obsolete).
Synonyms: methionine and threonine metabolic process
Comment: This term was made obsolete because its use of 'and' was causing violations to the true-path rule.
obsolete methyl ethyl ketone metabolic process (GO:0018928)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving methyl ethyl ketone, a clear, colorless liquid with a fragrant, mint-like odor. It is used as a solvent and in making plastics, textiles and paints.
Synonyms: 2-butanone metabolic process; 2-butanone metabolism; MEK metabolic process; MEK metabolism; methyl ethyl ketone metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
methyl fluoride metabolic process (GO:0018929)
Namespace: biological_process
Definition: The chemical reactions and pathways involving methyl fluoride, fluorine-substituted methane, a gaseous halogenated hydrocarbon that has been investigated as an inhibitor of methanotrophy and nitrification in soils.
Synonyms: methyl fluoride metabolism
obsolete methylquinoline metabolic process (GO:0018930)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving methylquinoline, an aromatic compound composed of a benzene ring and a heterocyclic N-containing ring.
Synonyms: 2-methylquinoline metabolic process; 2-methylquinoline metabolism; 3-methylquinoline metabolic process; 3-methylquinoline metabolism; quinaldine metabolic process; quinaldine metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
nicotine metabolic process (GO:0018933)
Namespace: biological_process
Definition: The chemical reactions and pathways involving nicotine, (S)(-)-3-(1-methyl-2-pyrrolidinyl)pyridine.
Synonyms: nicotine metabolism
obsolete nitrilotriacetate metabolic process (GO:0018934)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving nitrilotriacetate, an aminotricarboxylic acid that binds bivalent metal ions in a ratio of 1:1. As an important industrial chelating agent, NTA has been widely used for various radionuclide processing and decontamination procedures, such as textile, paper and pulp processing and water treatment.
Synonyms: nitrilotriacetate metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
obsolete aerobic nitrilotriacetate metabolic process (GO:0018935)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving nitrilotriacetate, the aminotricarboxylic acid N(CH2COO-)3, that occur in the presence of oxygen.
Synonyms: aerobic nitrilotriacetate metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
obsolete anaerobic nitrilotriacetate metabolic process (GO:0018936)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving nitrilotriacetate, the aminotricarboxylic acid N(CH2COO-)3, that occur in the absence of oxygen.
Synonyms: anaerobic nitrilotriacetate metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
nitroglycerin metabolic process (GO:0018937)
Namespace: biological_process
Definition: The chemical reactions and pathways involving nitroglycerin, a well-known nitrate ester and an important component of dynamite and other propellants. Toxic to algae, invertebrate, and vertebrates.
Synonyms: NG metabolic process; NG metabolism; nitroglycerin metabolism
obsolete n-octane metabolic process (GO:0018939)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving n-octane, the 8 carbon straight chain alkane used in organic syntheses, calibrations, and azeotropic distillations. It is a common component of gasoline and other petroleum products and the engine fuel antiknocking properties of an isomer of n-octane are used as a comparative standard in the Octane Rating System.
Synonyms: n-octane metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
obsolete orcinol metabolic process (GO:0018940)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving orcinol (5-methyl-1,3-benzenediol), an aromatic compound derived from the fermentation of lichen, and synthesized, probably as a fungicide, by some higher plants.
Synonyms: orcin metabolic process; orcin metabolism; orcinol metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
obsolete organomercury metabolic process (GO:0018941)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving organomercury compound, any organic compound containing a mercury atom.
Synonyms: organomercury metabolism
Comment: This term was obsoleted because there is no evidence that this process exists.
organometal metabolic process (GO:0018942)
Namespace: biological_process
Definition: The chemical reactions and pathways involving organometals, any metal-containing organic compound, especially one in which the metal atom is linked directly to one of more carbon atoms.
Synonyms: organometal metabolism
obsolete organotin metabolic process (GO:0018943)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving organotin, an organic compound containing a tin atom.
Synonyms: organotin metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
obsolete organosilicon metabolic process (GO:0018945)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving any organosilicon, organic compounds that contain silicon, a nonmetal element analogous to carbon.
Synonyms: organosilicon metabolism; organosilicone metabolic process; organosilicone metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
obsolete aerobic organosilicon metabolic process (GO:0018946)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving organosilicons, organic compounds that contain silicon, in the presence of oxygen.
Synonyms: aerobic organosilicon metabolism; aerobic organosilicone metabolic process; aerobic organosilicone metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
obsolete anaerobic organosilicon metabolic process (GO:0018947)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving organosilicons, organic compounds that contain silicon, in the absence of oxygen.
Synonyms: anaerobic organosilicon metabolism; anaerobic organosilicone metabolic process; anaerobic organosilicone metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
obsolete xylene metabolic process (GO:0018948)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving xylene, a mixture of three colorless, aromatic hydrocarbon liquids, ortho-, meta- and para-xylene.
Synonyms: xylene metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
obsolete m-xylene metabolic process (GO:0018949)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving m-xylene, (1,3-dimethylbenzene) a colorless, liquid aromatic hydrocarbon.
Synonyms: m-xylene metabolism; meta-xylene metabolic process; meta-xylene metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
obsolete o-xylene metabolic process (GO:0018950)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving o-xylene, (1,2-dimethylbenzene) a colorless, liquid aromatic hydrocarbon.
Synonyms: o-xylene metabolism; ortho-xylene metabolic process; ortho-xylene metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
obsolete p-xylene metabolic process (GO:0018951)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving p-xylene, (1,4-dimethylbenzene) a colorless, liquid aromatic hydrocarbon.
Synonyms: p-xylene metabolism; para-xylene metabolic process; para-xylene metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
obsolete parathion metabolic process (GO:0018952)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving parathion, a highly toxic organophosphate compound formerly used as a broad spectrum insecticide, acaricide, fumigant and nematocide. Degradation of parathion by sunlight or liver enzymes can result in the formation of the active compound paraoxon which interferes with the nervous system through cholinesterase inhibition.
Synonyms: parathion metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
pentaerythritol tetranitrate metabolic process (GO:0018954)
Namespace: biological_process
Definition: The chemical reactions and pathways involving pentaerythritol tetranitrate, C(CH2-O-NO2)4, a substance produced for use as an explosive and a vasodilator.
Synonyms: pentaerythritol tetranitrate metabolism
obsolete phenanthrene metabolic process (GO:0018955)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving phenanthrene, a tricyclic aromatic hydrocarbon used in explosives and in the synthesis of dyes and drugs. Although phenanthrene is not mutagenic or carcinogenic, it has been shown to be toxic to marine diatoms, gastropods, mussels, crustaceans, and fish.
Synonyms: phenanthrene metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
phenanthrene catabolic process via trans-9(R),10(R)-dihydrodiolphenanthrene (GO:0018956)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of phenanthrene, a tricyclic aromatic hydrocarbon, where trans-9(R),10(R)-dihydrodiolphenanthrene is the principal intermediate metabolite.
Synonyms: phenanthrene breakdown via trans-9(R),10(R)-dihydrodiolphenanthrene; phenanthrene degradation via trans-9(R),10(R)-dihydrodiolphenanthrene
phenanthrene catabolic process via trans-9(S),10(S)-dihydrodiolphenanthrene (GO:0018957)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of phenanthrene, a tricyclic aromatic hydrocarbon, where trans-9(S),10(S)-dihydrodiolphenanthrene is the principal intermediate metabolite.
Synonyms: phenanthrene breakdown via trans-9(S),10(S)-dihydrodiolphenanthrene; phenanthrene degradation via trans-9(S),10(S)-dihydrodiolphenanthrene