LiteFold/GO huggingface dataset:
epiboly involved in gastrulation with mouth forming second (GO:0055113)
Namespace: biological_process
Definition: The expansion of one cell sheet over other cells involved in deuterostomic gastrulation.
entry into diapause (GO:0055115)
Namespace: biological_process
Definition: The dormancy process that results in entry into diapause. Diapause is a neurohormonally mediated, dynamic state of low metabolic activity. Associated characteristics of this form of dormancy include reduced morphogenesis, increased resistance to environmental extremes, and altered or reduced behavioral activity. Full expression develops in a species-specific manner, usually in response to a number of environmental stimuli that precede unfavorable conditions. Once diapause has begun, metabolic activity is suppressed even if conditions favorable for development prevail. Once initiated, only certain stimuli are capable of releasing the organism from this state, and this characteristic is essential in distinguishing diapause from hibernation.
entry into reproductive diapause (GO:0055116)
Namespace: biological_process
Definition: The dormancy process that results in entry into reproductive diapause. Reproductive diapause is a form of diapause where the organism itself will remain fully active, including feeding and other routine activities, but the reproductive organs experience a tissue-specific reduction in metabolism, with characteristic triggering and releasing stimuli.
regulation of cardiac muscle contraction (GO:0055117)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of cardiac muscle contraction.
relaxation of cardiac muscle (GO:0055119)
Namespace: biological_process
Definition: The process in which the extent of cardiac muscle contraction is reduced.
striated muscle dense body (GO:0055120)
Namespace: cellular_component
Definition: A vinculin-containing myofibril attachment structure of striated muscle that connects sarcomeres to the extracellular matrix. In nematode body wall muscle, the dense body performs the dual role of Z-disk and costamere.
response to high fluence blue light stimulus by blue high-fluence system (GO:0055121)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of the detection of a high fluence blue light stimulus by the blue high-fluence system. Blue light is electromagnetic radiation with a wavelength of between 440 and 500nm. The blue high-fluence system responds to blue light at levels between 100 and 1000 micromols/m2.
Synonyms: response to high fluence blue light; response to high fluence blue light by bhf system
response to very low light intensity stimulus (GO:0055122)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a very low light intensity stimulus. A very low light intensity stimulus is defined as a level of electromagnetic radiation below 0.001 mmol/m2/sec.
digestive system development (GO:0055123)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the digestive system over time, from its formation to the mature structure. The digestive system is the entire structure in which digestion takes place. Digestion is all of the physical, chemical, and biochemical processes carried out by multicellular organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism.
obsolete premature neural plate formation (GO:0055124)
Namespace: biological_process
Definition: OBSOLETE. The formation of the neural plate before the appropriate time.
Synonyms: premature neural plate formation
obsolete Nic96 complex (GO:0055125)
Namespace: cellular_component
Definition: OBSOLETE. A protein complex that forms part of the nuclear pore complex, and is required for its correct assembly. In Saccharomyces cerevisiae Nic96 contains Nsp1p, Nup57p, Nup49p, and Nic96p.
Synonyms: Nic96 complex
obsolete Nup82 complex (GO:0055126)
Namespace: cellular_component
Definition: OBSOLETE. A protein complex that forms part of the nuclear pore complex. It forms a subcomplex with Nup159p and Nsp1p, interacts with Nup116p, and is required for proper localization of Nup116p. In Saccharomyces cerevisiae this complex contains Nup82p, Nsp1p, Nup159p, Nup116p, and Gle2p.
Synonyms: Nup82 complex
vibrational conductance of sound to the inner ear (GO:0055127)
Namespace: biological_process
Definition: The transmission of vibrations via ossicles to the inner ear.
L-proline biosynthetic process (GO:0055129)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of L-proline, an L-enantiomer of a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins.
Synonyms: pyrrolidine-2-carboxylic acid biosynthetic process
D-alanine catabolic process (GO:0055130)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of D-alanine.
Synonyms: (2R)-2-aminopropanoic acid catabolic process
C3HC4-type RING finger domain binding (GO:0055131)
Namespace: molecular_function
Definition: Binding to a C3HC4-type zinc finger domain of a protein. The C3HC4-type zinc finger is a variant of RING finger, is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C, where X is any amino acid. Many proteins containing a C3HC4-type RING finger play a key role in the ubiquitination pathway.
minus-end directed microfilament motor activity (GO:0060001)
Namespace: molecular_function
Definition: A motor activity that generates movement along a microfilament towards the minus end, driven by ATP hydrolysis. The minus end of an actin filament is the end that does not preferentially add actin monomers.
Synonyms: minus-end directed actin filament motor activity; minus-end directed actin-filament motor activity; pointed-end directed actin-filament motor activity
copper ion export (GO:0060003)
Namespace: biological_process
Definition: The directed movement of copper ions out of a cell or organelle.
Synonyms: copper export
reflex (GO:0060004)
Namespace: biological_process
Definition: An automatic response to a stimulus beginning with a nerve impulse from a receptor and ending with the action of an effector such as a gland or a muscle. Signaling never reaches a level of consciousness.
vestibular reflex (GO:0060005)
Namespace: biological_process
Definition: A reflex process in which a response to an angular or linear acceleration stimulus begins with an afferent nerve impulse from a receptor in the inner ear and ends with the compensatory action of eye muscles. Signaling never reaches a level of consciousness.
angular vestibuloocular reflex (GO:0060006)
Namespace: biological_process
Definition: A vestibular reflex by which a response to an angular acceleration stimulus begins with an afferent nerve impulse from a receptor in the semi-circular canal and ends with the compensatory action of eye muscles. Signaling never reaches a level of consciousness.
linear vestibuloocular reflex (GO:0060007)
Namespace: biological_process
Definition: A vestibular reflex by which a response to a linear acceleration stimulus begins with an afferent nerve impulse from a receptor in the otolith and ends with the compensatory action of eye muscles. Signaling never reaches a level of consciousness.
Sertoli cell differentiation (GO:0060008)
Namespace: biological_process
Definition: The process in which a relatively unspecialized cell acquires specialized structural and/or functional features of a Sertoli cell. A Sertoli cell is a supporting cell projecting inward from the basement membrane of seminiferous tubules.
Sertoli cell development (GO:0060009)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of a Sertoli cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a Sertoli cell fate.
Sertoli cell fate commitment (GO:0060010)
Namespace: biological_process
Definition: The process in which the cellular identity of Sertoli cells is acquired and determined.
Sertoli cell proliferation (GO:0060011)
Namespace: biological_process
Definition: The multiplication or reproduction of Sertoli cells, resulting in the expansion of the Sertoli cell population. A Sertoli cell is a supporting cell projecting inward from the basement membrane of seminiferous tubules.
synaptic transmission, glycinergic (GO:0060012)
Namespace: biological_process
Definition: The vesicular release of glycine from a presynapse, across a chemical synapse, the subsequent activation of glycine receptors at the postsynapse of a target cell (neuron, muscle, or secretory cell) and the effects of this activation on the postsynaptic membrane potential and ionic composition of the postsynaptic cytosol. This process encompasses both spontaneous and evoked release of neurotransmitter and all parts of synaptic vesicle exocytosis. Evoked transmission starts with the arrival of an action potential at the presynapse.
Synonyms: glycinergic synaptic transmission
righting reflex (GO:0060013)
Namespace: biological_process
Definition: A reflex process in which an animal immediately tries to turn over after being placed in a supine position.
Synonyms: righting response
granulosa cell differentiation (GO:0060014)
Namespace: biological_process
Definition: The process in which a relatively unspecialized cell acquires the specialized features of a granulosa cell, a supporting cell for the developing female gamete in the ovary of mammals.
granulosa cell fate commitment (GO:0060015)
Namespace: biological_process
Definition: The cell fate commitment of precursor cells that will become granulosa cells.
granulosa cell development (GO:0060016)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of a granulosa cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a granulosa cell fate.
parathyroid gland development (GO:0060017)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the parathyroid gland over time, from its formation to the mature structure. The parathyroid gland is an organ specialised for secretion of parathyroid hormone.
astrocyte fate commitment (GO:0060018)
Namespace: biological_process
Definition: The commitment of a cells to a specific astrocyte fate and its restriction to develop only into an astrocyte.
Bergmann glial cell differentiation (GO:0060020)
Namespace: biological_process
Definition: The process in which neuroepithelial cells of the neural tube give rise to Brgmann glial cells, specialized bipotential progenitors cells of the cerebellum. Differentiation includes the processes involved in commitment of a cell to a specific fate.
roof of mouth development (GO:0060021)
Namespace: biological_process
Definition: The biological process whose specific outcome is the progression of the roof of the mouth from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure. The roof of the mouth is the partition that separates the nasal and oral cavities.
Synonyms: palatum development
hard palate development (GO:0060022)
Namespace: biological_process
Definition: The biological process whose specific outcome is the progression of the hard palate from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure, whatever form that may be including its natural destruction. The hard palate is the anterior portion of the palate consisting of bone and mucous membranes.
Synonyms: palatum durum development
soft palate development (GO:0060023)
Namespace: biological_process
Definition: The biological process whose specific outcome is the progression of the soft palate from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure, whatever form that may be including its natural destruction. The soft palate is the posterior portion of the palate extending from the posterior edge of the hard palate.
Synonyms: palatum molle development; velum palatum development
rhythmic synaptic transmission (GO:0060024)
Namespace: biological_process
Definition: Any process involved in the generation of rhythmic, synchronous synaptic inputs in a neural circuit.
regulation of synaptic activity (GO:0060025)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of synaptic activity, the controlled release of neurotransmitters into the synaptic cleft and their subsequent detection by a postsynaptic cell.
convergent extension (GO:0060026)
Namespace: biological_process
Definition: The morphogenetic process in which an epithelium narrows along one axis and lengthens in a perpendicular axis.
convergent extension involved in gastrulation (GO:0060027)
Namespace: biological_process
Definition: The morphogenetic process in which an epithelium narrows along one axis and lengthens in a perpendicular axis usually resulting in the formation of the three primary germ layers, ectoderm, mesoderm and endoderm.
convergent extension involved in axis elongation (GO:0060028)
Namespace: biological_process
Definition: The morphogenetic process in which an epithelium narrows along one axis and lengthens in a perpendicular axis contributing to the lengthening of the axis of an organism.
convergent extension involved in organogenesis (GO:0060029)
Namespace: biological_process
Definition: The morphogenetic process in which an epithelium narrows along one axis and lengthens in a perpendicular axis contribution to the shaping of an organ.
mediolateral intercalation (GO:0060031)
Namespace: biological_process
Definition: The interdigitation of cells along the mediolateral axis during gastrulation.
anatomical structure regression (GO:0060033)
Namespace: biological_process
Definition: The developmental process in which an anatomical structure is destroyed as a part of its normal progression.
Synonyms: histolysis; tissue death
notochord cell development (GO:0060035)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of a notochord cell over time, from its formation to its mature structure. Cell development does not include the steps involved in committing a cell to a specific fate.
notochord cell vacuolation (GO:0060036)
Namespace: biological_process
Definition: The assembly and arrangement of a vacuole within a cell of the notochord.
pharyngeal system development (GO:0060037)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the pharyngeal system over time, from its formation to the mature structure. The pharyngeal system is a transient embryonic complex that is specific to vertebrates. It comprises the pharyngeal arches, bulges of tissues of mesoderm and neural crest derivation through which pass nerves and pharyngeal arch arteries. The arches are separated internally by pharyngeal pouches, evaginations of foregut endoderm, and externally by pharyngeal clefts, invaginations of surface ectoderm. The development of the system ends when the structure it contributes to are forming: the thymus, thyroid, parathyroids, maxilla, mandible, aortic arch, cardiac outflow tract, external and middle ear.
cardiac muscle cell proliferation (GO:0060038)
Namespace: biological_process
Definition: The expansion of a cardiac muscle cell population by cell division.
Synonyms: cardiac myocyte proliferation; cardiomyocyte proliferation; heart muscle cell proliferation
pericardium development (GO:0060039)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the pericardium over time, from its formation to the mature structure. The pericardium is a double-walled sac that contains the heart and the roots of the aorta, vena cava and the pulmonary artery.
retinal bipolar neuron differentiation (GO:0060040)
Namespace: biological_process
Definition: The process in which a relatively unspecialized cell acquires specialized features of a bipolar cell, the last neuron to be generated in the retina.
retina development in camera-type eye (GO:0060041)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the retina over time, from its formation to the mature structure. The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates.
Synonyms: retina development in camera-style eye; retinal development
regulation of cardiac muscle cell proliferation (GO:0060043)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of cardiac muscle cell proliferation.
Synonyms: regulation of cardiomyocyte proliferation; regulation of heart muscle cell proliferation
negative regulation of cardiac muscle cell proliferation (GO:0060044)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of cardiac muscle cell proliferation.
Synonyms: negative regulation of heart muscle cell proliferation
positive regulation of cardiac muscle cell proliferation (GO:0060045)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of cardiac muscle cell proliferation.
Synonyms: positive regulation of heart muscle cell proliferation
regulation of acrosome reaction (GO:0060046)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the acrosome reaction.
heart contraction (GO:0060047)
Namespace: biological_process
Definition: The multicellular organismal process in which the heart decreases in volume in a characteristic way to propel blood through the body.
Synonyms: cardiac contraction; heart beating; hemolymph circulation
cardiac muscle contraction (GO:0060048)
Namespace: biological_process
Definition: Muscle contraction of cardiac muscle tissue.
Synonyms: heart muscle contraction
obsolete regulation of protein glycosylation (GO:0060049)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of protein glycosylation. Protein glycosylation is the addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid, e.g. the addition of glycan chains to proteins.
Synonyms: regulation of protein amino acid glycosylation
Comment: The reason for obsoletion is that the term is not clearly defined and usage has been inconsistent.
obsolete positive regulation of protein glycosylation (GO:0060050)
Namespace: biological_process
Definition: OBSOLETE. Any process that activates or increases the frequency, rate or extent of the glycosylation of one or more amino acid residues within a protein. Protein glycosylation is the addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid, e.g. the addition of glycan chains to proteins.
Synonyms: positive regulation of protein amino acid glycosylation
Comment: The reason for obsoletion is that the term is not clearly defined and usage has been inconsistent.
obsolete negative regulation of protein glycosylation (GO:0060051)
Namespace: biological_process
Definition: OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the glycosylation of one or more amino acid residues within a protein. Protein glycosylation is the addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid, e.g. the addition of glycan chains to proteins.
Synonyms: negative regulation of protein amino acid glycosylation
Comment: he reason for obsoletion is that the term is not clearly defined and usage has been inconsistent.
neurofilament cytoskeleton organization (GO:0060052)
Namespace: biological_process
Definition: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising neurofilaments and their associated proteins.
Synonyms: neurofilament cytoskeleton organisation; neurofilament cytoskeleton organization and biogenesis
neurofilament cytoskeleton (GO:0060053)
Namespace: cellular_component
Definition: Intermediate filament cytoskeletal structure that is made up of neurofilaments. Neurofilaments are specialized intermediate filaments found in neurons.
positive regulation of epithelial cell proliferation involved in wound healing (GO:0060054)
Namespace: biological_process
Definition: Any process that activates or increases the rate or extent of epithelial cell proliferation, contributing to the restoration of integrity to a damaged tissue following an injury.
angiogenesis involved in wound healing (GO:0060055)
Namespace: biological_process
Definition: Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels and contribute to the series of events that restore integrity to a damaged tissue, following an injury.
mammary gland involution (GO:0060056)
Namespace: biological_process
Definition: The tissue remodeling that removes differentiated mammary epithelia during weaning.
apoptotic process involved in mammary gland involution (GO:0060057)
Namespace: biological_process
Definition: Any apoptotic process that triggers the activity of proteolytic caspases whose actions dismantle the mammary epithelial cells resulting in their programmed cell death.
Synonyms: apoptosis involved in mammary gland involution
positive regulation of apoptotic process involved in mammary gland involution (GO:0060058)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of cell death by apoptotic process of mammary epithelial cells during mammary gland involution.
Synonyms: positive regulation of apoptosis involved in mammary gland involution
embryonic retina morphogenesis in camera-type eye (GO:0060059)
Namespace: biological_process
Definition: The process in which the anatomical structure of the retina is generated and organized in a camera-type eye during the embryonic life stage.
post-embryonic retina morphogenesis in camera-type eye (GO:0060060)
Namespace: biological_process
Definition: The process in which the anatomical structure of the retina is generated and organized in a camera-type eye during the post-embryonic life stage.
Spemann organizer formation (GO:0060061)
Namespace: biological_process
Definition: Formation of the specialized region on the dorsalmost side of the embryo that acts as the main signaling center establishing the vertebrate body plan.
Synonyms: Spemann's organizer formation; Spemann-Mangold organizer formation
Spemann organizer formation at the dorsal lip of the blastopore (GO:0060062)
Namespace: biological_process
Definition: Formation of the specialized region at the dorsal lip of the blatopore of the embryo that acts as the main signaling center establishing the vertebrate body plan.
Synonyms: Spemann's organizer formation at the dorsal lip of the blastopore; Spemann-Mangold organizer formation at the dorsal lip of the blastopore
Comment: Occurs in amphibia, cephalochordates, cyclostomes and cartilaginous fish.
Spemann organizer formation at the embryonic shield (GO:0060063)
Namespace: biological_process
Definition: Formation of the specialized region of the embryonic shield of the embryo that acts as the main signaling center establishing the teleost body plan.
Synonyms: Spemann's organizer formation at the embryonic shield; Spemann-Mangold organizer formation at the embryonic shield
Comment: Occurs in Teleost fish.