LiteFold/GO huggingface dataset:
obsolete D-arabitol metabolic process (GO:0051163)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving D-arabitol, the pentitol derived from arabinose or lyxose by reduction of the aldehyde group. The D enantiomer is present in lichens and mushrooms.
Synonyms: D-arabitol metabolism
Comment: This term was obsoleted because it is an unnecessary grouping term.
xylitol metabolic process (GO:0051164)
Namespace: biological_process
Definition: The chemical reactions and pathways involving xylitol, a five-carbon sugar alcohol derived from xylose by reduction of the carbonyl group. It is as sweet as sucrose and is used as a noncariogenic sweetner and as a sugar substitute in diabetic diets.
Synonyms: xylitol metabolism
Comment: Note that xylitol is a meso compound, thus there are no L or D-versions.
obsolete 2,5-dihydroxypyridine metabolic process (GO:0051165)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving 2,5-dihydroxypyridine.
Synonyms: 2,5-dihydroxypyridine metabolism; pyridine-2,5-diol metabolic process
Comment: This term was obsoleted because it is an unnecessary grouping term.
D-xylulose 5-phosphate metabolic process (GO:0051167)
Namespace: biological_process
Definition: The chemical reactions and pathways involving D-xylulose 5-phosphate, a derivative of the ketopentose xylulose phosphorylated at the 5 carbon; it is an intermediate in the pentose phosphate pathway.
Synonyms: D-xylulose 5-phosphate metabolism; D-xylulose-5-phosphate metabolic process; D-xylulose-5-phosphate metabolism; xylulose 5-phosphate metabolic process; xylulose 5-phosphate metabolism; xylulose-5-phosphate metabolic process; xylulose-5-phosphate metabolism
nuclear export (GO:0051168)
Namespace: biological_process
Definition: The directed movement of substances out of the nucleus.
Synonyms: export from nucleus; nucleus export; substance nuclear export
nuclear transport (GO:0051169)
Namespace: biological_process
Definition: The directed movement of substances into, out of, or within the nucleus.
Synonyms: nucleus transport
obsolete regulation of nitrogen compound metabolic process (GO:0051171)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving nitrogen or nitrogenous compounds.
Comment: The reason for obsoletion is that this term was an unnecessary grouping term.
obsolete negative regulation of nitrogen compound metabolic process (GO:0051172)
Namespace: biological_process
Definition: OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving nitrogen or nitrogenous compounds.
Comment: The reason for obsoletion is that this term was an unnecessary grouping term.
obsolete positive regulation of nitrogen compound metabolic process (GO:0051173)
Namespace: biological_process
Definition: OBSOLETE. Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving nitrogen or nitrogenous compounds.
Synonyms: positive regulation of nitrogen metabolic process
Comment: The reason for obsoletion is that this term was an unnecessary grouping term.
regulation of phosphorus metabolic process (GO:0051174)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus.
Synonyms: regulation of phosphorus metabolism
obsolete negative regulation of sulfur metabolic process (GO:0051175)
Namespace: biological_process
Definition: OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving sulfur or compounds containing sulfur.
Synonyms: down regulation of sulfur metabolic process; down-regulation of sulfur metabolic process; downregulation of sulfur metabolic process; inhibition of sulfur metabolic process; negative regulation of sulfur metabolism; negative regulation of sulphur metabolic process; negative regulation of sulphur metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
obsolete positive regulation of sulfur metabolic process (GO:0051176)
Namespace: biological_process
Definition: OBSOLETE. Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving sulfur or compounds containing sulfur.
Synonyms: activation of sulfur metabolic process; positive regulation of sulfur metabolism; positive regulation of sulphur metabolic process; positive regulation of sulphur metabolism; stimulation of sulfur metabolic process; up regulation of sulfur metabolic process; up-regulation of sulfur metabolic process; upregulation of sulfur metabolic process
Comment: This term was obsoleted because it is an unnecessary grouping class.
meiotic sister chromatid cohesion (GO:0051177)
Namespace: biological_process
Definition: The cell cycle process in which sister chromatids of a replicated chromosome are joined along the entire length of the chromosome during meiosis.
obsolete meiotic chromosome decondensation (GO:0051178)
Namespace: biological_process
Definition: OBSOLETE. The cell cycle process in which chromosome structure is altered from the condensed form held during meiosis to the relaxed dispersed form held in resting cells.
Comment: This term was obsoleted because it is a spontaneous process.
localization (GO:0051179)
Namespace: biological_process
Definition: Any process in which a cell, a substance, or a cellular entity, such as a protein complex or organelle, is transported, tethered to or otherwise maintained in a specific location. In the case of substances, localization may also be achieved via selective degradation.
Synonyms: establishment and maintenance of cellular component location; establishment and maintenance of localization; establishment and maintenance of position; establishment and maintenance of substance location; establishment and maintenance of substrate location; localisation; single organism localization; single-organism localization
vitamin transport (GO:0051180)
Namespace: biological_process
Definition: The directed movement of vitamins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A vitamin is one of a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body.
Synonyms: vitamin or cofactor transport
obsolete cofactor transport (GO:0051181)
Namespace: biological_process
Definition: OBSOLETE. The directed movement of a cofactor into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A cofactor is a substance that is required for the activity of an enzyme or other protein.
Synonyms: vitamin or cofactor transport
Comment: 1. Making inferences in GO about compounds based on the cofactor role curated by ChEBI creates relationships that are not always true which violates ontological principles for GO; therefore we will cease making these inferences. 2. It is not meaningful to group transport processes that are not all chemically related by the fact that they may be used as a cofactor.
obsolete coenzyme transport (GO:0051182)
Namespace: biological_process
Definition: OBSOLETE. The directed movement of a coenzyme into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A coenzyme is any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed.
Comment: 1. Making inferences in GO about compounds based on the coenzyme role curated by ChEBI creates relationships that are not always true which violates ontological principles for GO; therefore we will cease making these inferences. 2. It is not meaningful to group transport processes that are not all chemically related by the fact that they may be used as a coenzyme.
obsolete cofactor transmembrane transporter activity (GO:0051184)
Namespace: molecular_function
Definition: OBSOLETE. Enables the transfer of a cofactor from one side of a membrane to the other. A cofactor is a substance that is required for the activity of an enzyme or other protein.
Synonyms: cofactor transporter activity; vitamin or cofactor transporter activity
Comment: 1. Making inferences in GO about compounds based on the cofactor role curated by ChEBI creates relationships that are not always true which violates ontological principles for GO; therefore we will cease making these inferences. 2. It is not meaningful to group transport processes that are not all chemically related by the fact that they may be used as a cofactor.
obsolete cofactor metabolic process (GO:0051186)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving a cofactor, a substance that is required for the activity of an enzyme or other protein. Cofactors may be inorganic, such as the metal atoms zinc, iron, and copper in certain forms, or organic, in which case they are referred to as coenzymes. Cofactors may either be bound tightly to active sites or bind loosely with the substrate.
Synonyms: cofactor metabolism
Comment: 1. Making inferences in GO about compounds based on the cofactor role curated by ChEBI creates relationships that are not always true which violates ontological principles for GO; therefore we will cease making these inferences. 2. It is not meaningful to group metabolic processes that are not all chemically related by the fact that they may be used as a cofactor.
obsolete cofactor catabolic process (GO:0051187)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the breakdown of a cofactor, a substance that is required for the activity of an enzyme or other protein.
Synonyms: cofactor breakdown; cofactor catabolism; cofactor degradation
Comment: 1. Making inferences in GO about compounds based on the cofactor role curated by ChEBI creates relationships that are not always true which violates ontological principles for GO; therefore we will cease making these inferences. 2. It is not meaningful to group metabolic processes that are not all chemically related by the fact that they may be used as a cofactor.
obsolete cofactor biosynthetic process (GO:0051188)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of a cofactor, a substance that is required for the activity of an enzyme or other protein.
Synonyms: cofactor anabolism; cofactor biosynthesis; cofactor formation; cofactor synthesis
Comment: 1. Making inferences in GO about compounds based on the cofactor role curated by ChEBI creates relationships that are not always true which violates ontological principles for GO; therefore we will cease making these inferences. 2. It is not meaningful to group metabolic processes that are not all chemically related by the fact that they may be used as a cofactor.
prosthetic group metabolic process (GO:0051189)
Namespace: biological_process
Definition: The chemical reactions and pathways involving a prosthetic group, the non-amino acid portion of certain protein molecules. Prosthetic groups may be inorganic or organic and are usually required for the biological activity of the protein.
Synonyms: coenzyme and prosthetic group metabolic process; coenzyme and prosthetic group metabolism; prosthetic group metabolism
prosthetic group catabolic process (GO:0051190)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of a prosthetic group, the non-amino acid portion of certain protein molecules. Prosthetic groups may be inorganic or organic and are usually required for the biological activity of the protein.
Synonyms: coenzyme and prosthetic group catabolic process; coenzyme and prosthetic group catabolism; prosthetic group breakdown; prosthetic group catabolism; prosthetic group degradation
prosthetic group biosynthetic process (GO:0051191)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of a prosthetic group, the non-amino acid portion of certain protein molecules. Prosthetic groups may be inorganic or organic and are usually required for the biological activity of the protein.
Synonyms: coenzyme and prosthetic group biosynthesis; coenzyme and prosthetic group biosynthetic process; prosthetic group anabolism; prosthetic group biosynthesis; prosthetic group formation; prosthetic group synthesis
prosthetic group binding (GO:0051192)
Namespace: molecular_function
Definition: Binding to a prosthetic group, the non-amino acid portion of certain protein molecules. Prosthetic groups may be inorganic or organic and are usually required for the biological activity of the protein.
obsolete regulation of cofactor metabolic process (GO:0051193)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving a cofactor.
Synonyms: regulation of cofactor metabolism
Comment: 1. Making inferences in GO about compounds based on the cofactor role curated by ChEBI creates relationships that are not always true which violates ontological principles for GO; therefore we will cease making these inferences. 2. It is not meaningful to group metabolic processes that are not all chemically related by the fact that they may be used as a cofactor.
obsolete positive regulation of cofactor metabolic process (GO:0051194)
Namespace: biological_process
Definition: OBSOLETE. Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving a cofactor.
Synonyms: activation of cofactor metabolic process; positive regulation of cofactor metabolism; stimulation of cofactor metabolic process; up regulation of cofactor metabolic process; up-regulation of cofactor metabolic process; upregulation of cofactor metabolic process
Comment: 1. Making inferences in GO about compounds based on the cofactor role curated by ChEBI creates relationships that are not always true which violates ontological principles for GO; therefore we will cease making these inferences. 2. It is not meaningful to group metabolic processes that are not all chemically related by the fact that they may be used as a cofactor.
obsolete negative regulation of cofactor metabolic process (GO:0051195)
Namespace: biological_process
Definition: OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving a cofactor.
Synonyms: down regulation of cofactor metabolic process; down-regulation of cofactor metabolic process; downregulation of cofactor metabolic process; inhibition of cofactor metabolic process; negative regulation of cofactor metabolism
Comment: 1. Making inferences in GO about compounds based on the cofactor role curated by ChEBI creates relationships that are not always true which violates ontological principles for GO; therefore we will cease making these inferences. 2. It is not meaningful to group metabolic processes that are not all chemically related by the fact that they may be used as a cofactor.
obsolete regulation of coenzyme metabolic process (GO:0051196)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving a coenzyme.
Synonyms: regulation of coenzyme and prosthetic group metabolic process; regulation of coenzyme and prosthetic group metabolism; regulation of coenzyme metabolism
Comment: 1. Making inferences in GO about compounds based on the coenzyme role curated by ChEBI creates relationships that are not always true which violates ontological principles for GO; therefore we will cease making these inferences. 2. It is not meaningful to group metabolic processes that are not all metabolically related by the fact that they may be used as a coenzyme.
obsolete positive regulation of coenzyme metabolic process (GO:0051197)
Namespace: biological_process
Definition: OBSOLETE. Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving a coenzyme.
Synonyms: activation of coenzyme metabolic process; positive regulation of coenzyme and prosthetic group metabolic process; positive regulation of coenzyme and prosthetic group metabolism; positive regulation of coenzyme metabolism; stimulation of coenzyme metabolic process; up regulation of coenzyme metabolic process; up-regulation of coenzyme metabolic process; upregulation of coenzyme metabolic process
Comment: 1. Making inferences in GO about compounds based on the coenzyme role curated by ChEBI creates relationships that are not always true which violates ontological principles for GO; therefore we will cease making these inferences. 2. It is not meaningful to group metabolic processes that are not all metabolically related by the fact that they may be used as a coenzyme.
obsolete negative regulation of coenzyme metabolic process (GO:0051198)
Namespace: biological_process
Definition: OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving a coenzyme.
Synonyms: down regulation of coenzyme metabolic process; down-regulation of coenzyme metabolic process; downregulation of coenzyme metabolic process; inhibition of coenzyme metabolic process; negative regulation of coenzyme and prosthetic group metabolic process; negative regulation of coenzyme and prosthetic group metabolism; negative regulation of coenzyme metabolism
Comment: 1. Making inferences in GO about compounds based on the coenzyme role curated by ChEBI creates relationships that are not always true which violates ontological principles for GO; therefore we will cease making these inferences. 2. It is not meaningful to group metabolic processes that are not all metabolically related by the fact that they may be used as a coenzyme.
obsolete regulation of prosthetic group metabolic process (GO:0051199)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving a prosthetic group.
Synonyms: regulation of coenzyme and prosthetic group metabolic process; regulation of coenzyme and prosthetic group metabolism; regulation of prosthetic group metabolism
Comment: This term was obsoleted because it conflates the regulation of a metabolic process and the role of its product.
obsolete positive regulation of prosthetic group metabolic process (GO:0051200)
Namespace: biological_process
Definition: OBSOLETE. Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving a prosthetic group.
Synonyms: activation of prosthetic group metabolic process; positive regulation of coenzyme and prosthetic group metabolic process; positive regulation of coenzyme and prosthetic group metabolism; positive regulation of prosthetic group metabolism; stimulation of prosthetic group metabolic process; up regulation of prosthetic group metabolic process; up-regulation of prosthetic group metabolic process; upregulation of prosthetic group metabolic process
Comment: This term was obsoleted because it conflates the regulation of a metabolic process and the role of its product.
obsolete negative regulation of prosthetic group metabolic process (GO:0051201)
Namespace: biological_process
Definition: OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving a prosthetic group.
Synonyms: down regulation of prosthetic group metabolic process; down-regulation of prosthetic group metabolic process; downregulation of prosthetic group metabolic process; inhibition of prosthetic group metabolic process; negative regulation of coenzyme and prosthetic group metabolic process; negative regulation of coenzyme and prosthetic group metabolism; negative regulation of prosthetic group metabolism
Comment: This term was obsoleted because it conflates the regulation of a metabolic process and the role of its product.
obsolete phytochromobilin metabolic process (GO:0051202)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving phytochromobilin, the linear tetrapyrrole chromophore required for plant phytochrome photoactivity.
Synonyms: phytochromobilin metabolism
Comment: This term was obsoleted because it is an unnecessary grouping term.
obsolete peptidyl-aspartic acid reduction to form L-aspartyl aldehyde (GO:0051203)
Namespace: biological_process
Definition: OBSOLETE. The reduction of peptidyl-aspartic acid to form peptidyl-L-aspartyl aldehyde, as found photosystem II P680 chlorophyll A apoprotein.
Synonyms: peptidyl-aspartic acid reduction to form L-aspartate-beta-semialdehyde; peptidyl-aspartic acid reduction to form L-beta-formylalanine
Comment: This term was obsoleted because it represents a molecular function.
protein insertion into membrane (GO:0051205)
Namespace: biological_process
Definition: The process that results in the incorporation of a protein into a biological membrane. Incorporation in this context means having some part or covalently attached group that is inserted into the the hydrophobic region of one or both bilayers.
Synonyms: integral membrane protein localization; integral membrane protein positioning; membrane protein localization; membrane protein positioning; protein-membrane insertion
obsolete silicate metabolic process (GO:0051206)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving silicates, the salts of silicic acids. Silicates are usually composed of silicon and oxygen (Si[x]O[y]), one or more metals, and possibly hydrogen. Types of silicate include unisilicates, metasilicates and hydrous silicates.
Synonyms: silicate metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
obsolete sequestering of calcium ion (GO:0051208)
Namespace: biological_process
Definition: OBSOLETE. The process of binding or confining calcium ions such that they are separated from other components of a biological system.
Synonyms: calcium ion (Ca2+) retention; calcium ion (Ca2+) sequestering; calcium ion (Ca2+) sequestration; calcium ion (Ca2+) storage; calcium ion storage activity; negative regulation of calcium ion (Ca2+) transport; retention of calcium ion (Ca2+); sequestering of calcium ion (Ca2+); sequestration of calcium ion (Ca2+); storage of calcium ion (Ca2+)
Comment: The reason for obsoletion is that this term represents a molecular function and not a real GO process.
release of sequestered calcium ion into cytosol (GO:0051209)
Namespace: biological_process
Definition: The process in which calcium ions sequestered in the endoplasmic reticulum, Golgi apparatus or mitochondria are released into the cytosolic compartment.
Synonyms: calcium ion (Ca2+) mobilization; calcium mobilization; cytoplasmic release of sequestered calcium ion (Ca2+); cytoplasmic release of stored calcium ion (Ca2+); cytosolic release of sequestered calcium ion (Ca2+); cytosolic release of stored calcium ion (Ca2+); release of sequestered calcium ion (Ca2+); release of sequestered calcium ion into cytoplasm; release of stored calcium ion (Ca2+); release of stored calcium ion (Ca2+) into cytoplasm; release of stored calcium ion (Ca2+) into cytosol
isotropic cell growth (GO:0051210)
Namespace: biological_process
Definition: The process in which a cell irreversibly increases in size uniformly in all directions. In general, a rounded cell morphology reflects isotropic cell growth.
Synonyms: uniform cell growth
anisotropic cell growth (GO:0051211)
Namespace: biological_process
Definition: The process in which a cell irreversibly increases in size in one or more axes, where the growth rate varies according to the direction of growth. Growth may be limited to a particular axis, axes, or to particular locations on the surface of the cell.
Synonyms: non-isotropic cell growth