LiteFold/GO huggingface dataset:
skeletal muscle satellite cell activation (GO:0014719)
Namespace: biological_process
Definition: The change of a skeletal muscle satellite cell from a mitotically quiescent to a mitotically active state following exposure to some activating factor such as a cellular or soluble ligand. In adult muscle, satellite cells become activated to divide and differentiate in response to muscle damage.
tonic skeletal muscle contraction (GO:0014720)
Namespace: biological_process
Definition: A process in which force is generated within tonic skeletal muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The tonic skeletal muscle is characterized by long lasting contractile responses and high resistance to fatigue.
twitch skeletal muscle contraction (GO:0014721)
Namespace: biological_process
Definition: A process in which force is generated within twitch skeletal muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The twitch skeletal muscle responds to neurostimulations with a contraction followed by a relaxation.
regulation of skeletal muscle contraction by calcium ion signaling (GO:0014722)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of skeletal muscle contraction by changing the calcium ion signals that trigger contraction.
Synonyms: regulation of skeletal muscle contraction by calcium ion signalling
regulation of skeletal muscle contraction by modulation of calcium ion sensitivity of myofibril (GO:0014723)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of skeletal muscle contraction by changing calcium ion binding affinity of the myofibril.
Synonyms: regulation of calcium ion sensitivity of myofibril involved in skeletal muscle contraction
regulation of twitch skeletal muscle contraction (GO:0014724)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of twitch skeletal muscle contraction.
regulation of extraocular skeletal muscle development (GO:0014725)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of extraocular skeletal muscle development. Extraocular skeletal muscle development is the process whose specific outcome is the progression of the extraocular skeletal muscle over time, from its formation to the mature structure. The extraocular muscle is derived from cranial mesoderm and controls eye movements. The muscle begins its development with the differentiation of the muscle cells and ends with the mature muscle.
negative regulation of extraocular skeletal muscle development (GO:0014726)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of extraocular skeletal muscle development. Extraocular skeletal muscle development is the process whose specific outcome is the progression of the extraocular skeletal muscle over time, from its formation to the mature structure. The extraocular muscle is derived from cranial mesoderm and controls eye movements. The muscle begins its development with the differentiation of the muscle cells and ends with the mature muscle.
regulation of the force of skeletal muscle contraction (GO:0014728)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the force of skeletal muscle contraction. The force of skeletal muscle contraction is produced by acto-myosin interaction processes through the formation of cross bridges.
regulation of the velocity of shortening of skeletal muscle modulating contraction (GO:0014729)
Namespace: biological_process
Definition: Any process that modulates velocity of shortening of a skeletal muscle contraction. The shortening leads to reduction of the length of muscle fibers and sarcomeres.
Synonyms: regulation of the velocity of shortening of skeletal muscle during contraction
spectrin-associated cytoskeleton (GO:0014731)
Namespace: cellular_component
Definition: The part of the cytoskeleton composed of spectrin, protein 4.1 and ankyrin. Spectrin-associated cytoskeleton is associated with the plasma membrane.
skeletal muscle atrophy (GO:0014732)
Namespace: biological_process
Definition: A process, occurring in skeletal muscle, that is characterized by a decrease in protein content, fiber diameter, force production and fatigue resistance in response to different conditions such as starvation, aging and disuse.
regulation of skeletal muscle adaptation (GO:0014733)
Namespace: biological_process
Definition: Any process in which skeletal muscle adapts, with consequent modifications to structural and/or functional phenotypes, in response to a stimulus. Stimuli include contractile activity, loading conditions, substrate supply, and environmental factors. These adaptive events occur in both muscle fibers and associated structures (motoneurons and capillaries), and they involve alterations in regulatory mechanisms, contractile properties and metabolic capacities.
Synonyms: regulation of skeletal muscle plasticity
skeletal muscle hypertrophy (GO:0014734)
Namespace: biological_process
Definition: The enlargement or overgrowth of all or part of an organ due to an increase in size (not length) of individual muscle fibers without cell division. In the case of skeletal muscle cells this happens due to the additional synthesis of sarcomeric proteins and assembly of myofibrils.
regulation of muscle atrophy (GO:0014735)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of muscle atrophy.
negative regulation of muscle atrophy (GO:0014736)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate, or extent of muscle atrophy.
positive regulation of muscle atrophy (GO:0014737)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of muscle atrophy.
negative regulation of muscle hyperplasia (GO:0014740)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate, or extent of muscle hyperplasia.
negative regulation of muscle hypertrophy (GO:0014741)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate, or extent of muscle hypertrophy.
positive regulation of muscle hypertrophy (GO:0014742)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of muscle hypertrophy.
regulation of muscle hypertrophy (GO:0014743)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of muscle hypertrophy.
positive regulation of muscle adaptation (GO:0014744)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of muscle adaptation.
Synonyms: positive regulation of muscle plasticity
negative regulation of muscle adaptation (GO:0014745)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate, or extent of muscle adaptation.
Synonyms: negative regulation of muscle plasticity
regulation of tonic skeletal muscle contraction (GO:0014746)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of tonic skeletal muscle contraction.
positive regulation of tonic skeletal muscle contraction (GO:0014747)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of tonic skeletal muscle contraction.
negative regulation of tonic skeletal muscle contraction (GO:0014748)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of tonic skeletal muscle contraction.
longitudinal sarcoplasmic reticulum (GO:0014801)
Namespace: cellular_component
Definition: The portion of the free sarcoplasmic reticulum consisting of longitudinal tubules that connect terminal cisternae.
terminal cisterna (GO:0014802)
Namespace: cellular_component
Definition: The portion of sarcoplasmic reticulum devoted to calcium ion storage and calcium ion release.
longitudinal sarcoplasmic reticulum lumen (GO:0014803)
Namespace: cellular_component
Definition: The region between the inner and outer lipid bilayers of the longitudinal sarcoplasmic reticulum envelope. The longitudinal sarcoplasmic reticulum lumen is continuous with the lumen contained within the terminal cisternae.
terminal cisterna lumen (GO:0014804)
Namespace: cellular_component
Definition: The region between the inner and outer lipid bilayers of the terminal cisterna envelope. This space is enriched in calsequestrin.
smooth muscle adaptation (GO:0014805)
Namespace: biological_process
Definition: Any process in which smooth muscle adapts, with consequent modifications to structural and/or functional phenotypes, in response to a stimulus. Stimuli include contractile activity, loading conditions, substrate supply, and environmental factors. These adaptive events occur in both muscle fibers and associated structures (motoneurons and capillaries), and they involve alterations in regulatory mechanisms, contractile properties and metabolic capacities.
Synonyms: smooth muscle plasticity
smooth muscle hyperplasia (GO:0014806)
Namespace: biological_process
Definition: A process, occurring in smooth muscle, in which there is an increase in cell number by cell division, often leading to an increase in the size of an organ.
regulation of somitogenesis (GO:0014807)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of somitogenesis.
release of sequestered calcium ion into cytosol by sarcoplasmic reticulum (GO:0014808)
Namespace: biological_process
Definition: The process in which the release of sequestered calcium ion by sarcoplasmic reticulum into cytosol occurs via calcium release channels.
Synonyms: release of sequestered calcium ion by sarcoplasmic reticulum into cytosol
regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion (GO:0014809)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of skeletal muscle contraction via the regulation of the release of sequestered calcium ion by sarcoplasmic reticulum into cytosol. The sarcoplasmic reticulum is the endoplasmic reticulum of striated muscle, specialised for the sequestration of calcium ions that are released upon receipt of a signal relayed by the T tubules from the neuromuscular junction.
positive regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion (GO:0014810)
Namespace: biological_process
Definition: Any process that activates, maintains or increases the frequency, rate or extent of skeletal muscle contraction via the regulation of the release of sequestered calcium ion by sarcoplasmic reticulum into cytosol. The sarcoplasmic reticulum is the endoplasmic reticulum of striated muscle, specialised for the sequestration of calcium ions that are released upon receipt of a signal relayed by the T tubules from the neuromuscular junction.
negative regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion (GO:0014811)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of skeletal muscle contraction via the regulation of the release of sequestered calcium ion by sarcoplasmic reticulum into cytosol. The sarcoplasmic reticulum is the endoplasmic reticulum of striated muscle, specialised for the sequestration of calcium ions that are released upon receipt of a signal relayed by the T tubules from the neuromuscular junction.
muscle cell migration (GO:0014812)
Namespace: biological_process
Definition: The orderly movement of a muscle cell from one site to another, often during the development of a multicellular organism.
obsolete initiation of skeletal muscle satellite cell activation by growth factor signaling, involved in skeletal muscle regeneration (GO:0014815)
Namespace: biological_process
Definition: OBSOLETE. Signaling between growth factors and their receptors that results in the activation of satellite cell, where this process is involved in skeletal muscle regeneration. Satellite cells are quiescent cells that are located between the basal lamina and the plasmalemma of the muscle fiber, which are the main contributors to postnatal muscle growth. In adult muscle, satellite cells become activated to divide and differentiate in response to muscle damage.
Comment: The reason for obsoletion is that the term is pre-composed and should be represented as a GO-CAM model.
skeletal muscle satellite cell differentiation (GO:0014816)
Namespace: biological_process
Definition: The process in which a relatively unspecialized cell acquires specialized features of a satellite cell.
skeletal muscle satellite cell fate specification (GO:0014817)
Namespace: biological_process
Definition: The process in which a cell becomes capable of differentiating autonomously into a skeletal muscle satellite cell in an environment that is neutral with respect to the developmental pathway. Upon specification, the cell fate can be reversed.
skeletal muscle satellite cell fate determination (GO:0014818)
Namespace: biological_process
Definition: The process in which a cell becomes capable of differentiating autonomously into a skeletal muscle satellite cell regardless of its environment; upon determination, the cell fate cannot be reversed.
regulation of skeletal muscle contraction (GO:0014819)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of skeletal muscle contraction.
tonic smooth muscle contraction (GO:0014820)
Namespace: biological_process
Definition: A process in which force is generated within tonic smooth muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. In the tonic smooth muscle, the muscle contraction occurs without an ordered sarcomeric structure. Tonic smooth muscle contraction occurs as a sustained continuous contraction.
phasic smooth muscle contraction (GO:0014821)
Namespace: biological_process
Definition: A process in which force is generated within phasic smooth muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. In the phasic smooth muscle, the muscle contraction occurs without an ordered sarcomeric structure. Phasic smooth muscle contraction occurs in a series of discrete contractions and relaxations.
detection of wounding (GO:0014822)
Namespace: biological_process
Definition: The series of events by which an injury stimulus is received and converted into a molecular signal.
Synonyms: detection of injury
artery smooth muscle contraction (GO:0014824)
Namespace: biological_process
Definition: A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the artery. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The artery is a vessel carrying blood away from the heart.
stomach fundus smooth muscle contraction (GO:0014825)
Namespace: biological_process
Definition: A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the fundus of stomach. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The fundus is the portion of the stomach that lies above the cardiac notch.
vein smooth muscle contraction (GO:0014826)
Namespace: biological_process
Definition: A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the vein. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The vein is a vessel carrying blood away from the capillary beds.
intestine smooth muscle contraction (GO:0014827)
Namespace: biological_process
Definition: A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the intestine. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The intestine is the section of the alimentary canal from the stomach to the anal canal. It includes the large intestine and small intestine.
distal stomach smooth muscle contraction (GO:0014828)
Namespace: biological_process
Definition: A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the distal stomach. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The distal stomach is composed of the lower body and antrum and develops strong peristaltic phasic contractions that increase in amplitude as they propagate toward the pylorus.
vascular associated smooth muscle contraction (GO:0014829)
Namespace: biological_process
Definition: A process, occurring in the vascular tissue, whereby actin/myosin complex activity generates force through ATP hydrolysis resulting in a change in smooth muscle geometry. This process is always coupled to chemo-mechanical energy conversion.
Synonyms: vascular smooth muscle contraction
arteriole smooth muscle contraction (GO:0014830)
Namespace: biological_process
Definition: A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the arteriole. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The arteriole is the smallest division of the artery located between the muscular arteries and the capillaries.
gastro-intestinal system smooth muscle contraction (GO:0014831)
Namespace: biological_process
Definition: A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the gastro-intestinal system. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The gastro-intestinal system generally refers to the digestive structures stretching from the mouth to anus, but does not include the accessory glandular organs (liver, pancreas and biliary tract).
urinary bladder smooth muscle contraction (GO:0014832)
Namespace: biological_process
Definition: A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the urinary bladder. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The urinary bladder is a musculomembranous sac along the urinary tract.
skeletal muscle satellite stem cell asymmetric division (GO:0014833)
Namespace: biological_process
Definition: The asymmetric division of a skeletal muscle satellite stem cell to produce two daughter cells, one of which is destined to differentiate and the other to be a quiescent cell that restocks the satellite cell pool.
Synonyms: satellite cell asymmetric division
skeletal muscle satellite cell maintenance involved in skeletal muscle regeneration (GO:0014834)
Namespace: biological_process
Definition: Any process by which the number of skeletal muscle satellite cells in a skeletal muscle is maintained during muscle regeneration. There are at least three mechanisms by which this is achieved. Skeletal muscle satellite stem cell asymmetric division ensures satellite stem cell numbers are kept constant. Symmetric division of these cells amplifies the number of skeletal muscle satellite stem cells. Some adult skeletal muscle myoblasts (descendants of activated satellite cells) can develop back into quiescent satellite cells, replenishing the overall pool of satellite cells.
Synonyms: satellite cell compartment self-renewal involved in skeletal muscle regeneration; satellite cell population maintenance; satellite cell self-renewal
myoblast differentiation involved in skeletal muscle regeneration (GO:0014835)
Namespace: biological_process
Definition: The process in which a relatively unspecialized satellite cell acquires specialized features of a myoblast. This occurs as part of skeletal muscle regeneration. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers.
obsolete myoblast fate commitment involved in skeletal muscle regeneration (GO:0014836)
Namespace: biological_process
Definition: OBSOLETE. The process in which the developmental fate of a satellite cell becomes restricted such that it will develop into a myoblast. This occurs as part of skeletal muscle regeneration. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers.
Comment: This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.
obsolete myoblast fate determination involved in skeletal muscle regeneration (GO:0014837)
Namespace: biological_process
Definition: OBSOLETE. The process in which a satellite cell becomes capable of differentiating autonomously into a myoblast regardless of its environment; upon determination, the cell fate cannot be reversed. This occurs as part of skeletal muscle regeneration. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers.
Comment: This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.
obsolete myoblast fate specification involved in skeletal muscle regeneration (GO:0014838)
Namespace: biological_process
Definition: OBSOLETE. The process in which a satellite cell becomes capable of differentiating autonomously into a myoblast in an environment that is neutral with respect to the developmental pathway. Upon specification, the cell fate can be reversed. This occurs as part of skeletal muscle regeneration. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers.
Comment: This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.
myoblast migration involved in skeletal muscle regeneration (GO:0014839)
Namespace: biological_process
Definition: The process in which a myoblast migrates along an entire fiber to the site of injury. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers.
Synonyms: mononucleate cell migration involved in skeletal muscle regeneration