LiteFold/GO huggingface dataset:
CLRC complex localization to heterochromatin (GO:0044382)
Namespace: biological_process
Definition: The process by which a CLRC complex is transported to, or maintained in, heterochromatin. CLRC complex is an active cullin-dependent E3 ubiquitin ligase complex essential for heterochromatin assembly by RNAi and histone H3K9 methylation.
Synonyms: CLRC ubiquitin ligase complex localisation to heterochromatin; CLRC ubiquitin ligase complex localization to heterochromatin
host chromosome (GO:0044383)
Namespace: cellular_component
Definition: A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information, occurring within a host cell.
host outer membrane (GO:0044384)
Namespace: cellular_component
Definition: The external membrane of Gram-negative bacteria or certain organelles such as mitochondria and chloroplasts; freely permeable to most ions and metabolites, occurring in a host cell.
Synonyms: host cell outer membrane
Comment: This term covers the outer membrane of the host cell envelope or the outer membrane of a host organelle. For the outer layer of the host cell envelope specifically, see host cell outer membrane ; GO:0039662.
obsolete integral to host endoplasmic reticulum membrane (GO:0044386)
Namespace: cellular_component
Definition: OBSOLETE. Penetrating at least one phospholipid bilayer of an endoplasmic reticulum membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. Occurring in a host cell.
Comment: This term was obsoleted because it represents protein topology, not a cellular component.
negative regulation of protein kinase activity by regulation of protein phosphorylation (GO:0044387)
Namespace: biological_process
Definition: The stopping, prevention, or reduction in frequency, rate or extent of protein kinase activity as a result of regulating the phosphorylation status of that protein kinase.
small protein activating enzyme binding (GO:0044388)
Namespace: molecular_function
Definition: Binding to a small protein activating enzyme, such as ubiquitin-activating enzyme.
ubiquitin-like protein ligase binding (GO:0044389)
Namespace: molecular_function
Definition: Binding to a ubiquitin-like protein ligase, such as ubiquitin-ligase.
Synonyms: E3 protein ligase binding; small conjugating protein ligase binding
ribosomal subunit (GO:0044391)
Namespace: cellular_component
Definition: Either of the two subunits of a ribosome: the ribosomal large subunit or the ribosomal small subunit.
obsolete peptidyl-lysine malonylation (GO:0044392)
Namespace: biological_process
Definition: OBSOLETE. The addition of a malonyl group (CO-CH2-CO) to peptidyl-lysine to form N6-malonyl-L-lysine.
Synonyms: lysine malonylation
Comment: This term was obsoleted because it represents a molecular function.
microspike (GO:0044393)
Namespace: cellular_component
Definition: A dynamic, actin-rich projection extending from the surface of a migrating animal cell.
Comment: Although in some literature 'microspike' and 'filopodium' are used synonymously, in GO microspike refers to a cell projection that is distinct from a filopodium. See also 'filopodium ; GO:0030175'.
protein targeting to vacuolar membrane (GO:0044395)
Namespace: biological_process
Definition: The process of directing proteins towards the vacuolar membrane; usually uses signals contained within the protein.
actin cortical patch organization (GO:0044396)
Namespace: biological_process
Definition: A process that is carried out at the cellular level and results in the assembly, arrangement of constituent parts, or disassembly of an actin cortical patch, a discrete actin-containing structure found at the plasma membrane in cells, at sites of endocytosis.
Synonyms: actin cortical patch organisation
obsolete actin cortical patch internalization (GO:0044397)
Namespace: biological_process
Definition: OBSOLETE. A process of actin cortical patch localization in which the patch moves from the cell surface to the inside of the cell.
Comment: The reason for obsoletion is that it represents a phenotype.
venom-mediated edema (GO:0044398)
Namespace: biological_process
Definition: A process by which an organism causes swelling of soft tissues in another organism via the action of a venom. Edema is the result of excess water accumulation in tissues.
Synonyms: envenomation resulting in induction of edema in another organism; envenomation resulting in induction of edema in other organism; envenomation resulting in induction of oedema in other organism
multi-species biofilm formation (GO:0044399)
Namespace: biological_process
Definition: A process in which planktonically growing microorganisms of different species grow at a liquid-air interface or on a solid substrate under the flow of a liquid and produce extracellular polymers that facilitate matrix formation, resulting in a change in the organisms' growth rate and gene transcription.
Synonyms: multi-species biofilm formation in or on host organism; multi-species biofilm formation on inanimate substrate; multi-species submerged biofilm formation; multi-species surface biofilm formation
obsolete competition with other organism (GO:0044402)
Namespace: biological_process
Definition: OBSOLETE. Any process in which an organism within a multispecies community gains an advantage in growth or survival over another organism of a different species in that community.
Synonyms: competition with another organism; interspecies competition
Comment: This term was obsoleted because it is outside the scope of GO.
biological process involved in symbiotic interaction (GO:0044403)
Namespace: biological_process
Definition: A process carried out by gene products in an organism that enable the organism to engage in a symbiotic relationship, a more or less intimate association, with another organism. The various forms of symbiosis include parasitism, in which the association is disadvantageous or destructive to one of the organisms; mutualism, in which the association is advantageous, or often necessary to one or both and not harmful to either; and commensalism, in which one member of the association benefits while the other is not affected. However, mutualism, parasitism, and commensalism are often not discrete categories of interactions and should rather be perceived as a continuum of interaction ranging from parasitism to mutualism. In fact, the direction of a symbiotic interaction can change during the lifetime of the symbionts due to developmental changes as well as changes in the biotic/abiotic environment in which the interaction occurs. Microscopic symbionts are often referred to as endosymbionts.
Synonyms: commensalism; host-pathogen interaction; parasitism; symbiosis; symbiosis, encompassing mutualism through parasitism; symbiotic interaction; symbiotic interaction between host and organism; symbiotic interaction between organisms; symbiotic interaction between species; symbiotic process
obsolete detection of host (GO:0044405)
Namespace: biological_process
Definition: OBSOLETE. The set of specific processes that allow an organism to detect the presence of its host via physical or chemical signals. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Synonyms: recognition of host
Comment: The reason for obsoletion is that the term is not a specific process and there are no annotations.
adhesion of symbiont to host (GO:0044406)
Namespace: biological_process
Definition: The attachment of a symbiont to its host via either adhesion molecules, general stickiness, or other mechanisms. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Synonyms: adhesion to host; adhesion to other organism during symbiotic interaction; adhesion to other organism involved in symbiotic interaction; host adhesion
single-species biofilm formation in or on host organism (GO:0044407)
Namespace: biological_process
Definition: A process in which microorganisms of the same species attach to and grow in or on a host species, and produce extracellular polymers that facilitate attachment and matrix formation, resulting in a change in the microorganisms' growth rate and gene transcription. The host is defined as the larger of the organisms involved in a symbiotic interaction.
symbiont entry into host (GO:0044409)
Namespace: biological_process
Definition: Entry of a symbiont into the body, tissues, or cells of a host organism as part of the symbiont life cycle. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Synonyms: entry into cell of other organism during symbiotic interaction; entry into cell of other organism involved in symbiotic interaction; entry into host; entry into host cell via penetration peg; entry into host through host barriers; entry into host via a specialized structure during symbiotic interaction; entry into host via enzymatic degradation of host anatomical structure; entry into host via enzymatic degradation of host cuticle; entry into other organism during symbiotic interaction; entry into other organism involved in symbiotic interaction; host invasion; host penetration; invasion into host; invasion into other organism; invasion of host; invasion of other organism; invasive growth; other organism invasion; penetration into host; penetration into host via a specialized structure; penetration into host via a specialized structure during symbiotic interaction
obsolete entry into host through natural portals (GO:0044410)
Namespace: biological_process
Definition: OBSOLETE. Penetration by a symbiont into a host organism via naturally occurring openings in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Synonyms: entry into other organism through natural portals during symbiotic interaction; entry into other organism through natural portals involved in symbiotic interaction
Comment: This is an unnecessary grouping term.
obsolete growth or development of symbiont in host (GO:0044412)
Namespace: biological_process
Definition: OBSOLETE. The increase in size or mass of an organism, or the progression of an organism from an initial condition to a later condition, occurring within the cells or tissues of the host organism. This may (but not necessarily) include a filamentous growth form, and also can include secretion of proteases and lipases to break down host tissue. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Synonyms: growth or development of organism within host; growth or development of symbiont in host; growth or development of symbiont within host; invasive growth
Comment: This term was made obsolete because it contained a conjunction (or).
symbiont-mediated suppression of host defenses (GO:0044414)
Namespace: biological_process
Definition: A process in which a symbiont interferes with, inhibits or disrupts the normal execution of host defense(s) by active mechanisms that normally result in the shutting down of a host pathway. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Synonyms: down regulation by organism of defense response of other organism during symbiotic interaction; down regulation by symbiont of host defense response; down-regulation by organism of defense response of other organism during symbiotic interaction; down-regulation by symbiont of host defense response; downregulation by organism of defense response of other organism during symbiotic interaction; downregulation by symbiont of host defense response; inhibition by organism of defense response of other organism during symbiotic interaction; inhibition by symbiont of host defense response; negative regulation by organism of defense response of other organism during symbiotic interaction; negative regulation by organism of defense response of other organism involved in symbiotic interaction; negative regulation by symbiont of host defense response; negative regulation of host defenses; suppression of defense response of other organism; suppression of defense response of other organism involved in symbiotic interaction; suppression of defenses of other organism involved in symbiotic interaction; suppression of host defense response; suppression of host defenses by symbiont
obsolete induction by symbiont of host defense response (GO:0044416)
Namespace: biological_process
Definition: OBSOLETE. The activation by an organism of the defense response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Synonyms: activation by symbiont of host defense response; activation of host defense response; induction by organism of defense response of other organism involved in symbiotic interaction; positive regulation by organism of defense response of other organism involved in symbiotic interaction; positive regulation by symbiont of host defense response; stimulation by symbiont of host defense response; up regulation by symbiont of host defense response; up-regulation by symbiont of host defense response; upregulation by symbiont of host defense response
Comment: This term was obsoleted because there is no evidece that this process exists.
translocation of molecules into host (GO:0044417)
Namespace: biological_process
Definition: The directed movement of a molecule(s) produced by an organism to a location inside its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Synonyms: translocation of molecules into other organism during symbiotic interaction; translocation of molecules into other organism involved in symbiotic interaction; transport of molecules into host; transport of molecules into other organism during symbiotic interaction
obsolete translocation of DNA into host (GO:0044418)
Namespace: biological_process
Definition: OBSOLETE. The directed movement of DNA from an organism to a location inside its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Synonyms: translocation of DNA into other organism during symbiotic interaction; translocation of DNA into other organism involved in symbiotic interaction; transport of DNA into host; transport of DNA into other organism during symbiotic interaction
Comment: This term was obsoleted because it was redundant with other terms.
biological process involved in interspecies interaction between organisms (GO:0044419)
Namespace: biological_process
Definition: Any process evolved to enable an interaction with an organism of a different species.
Synonyms: interaction with another species; interspecies interaction; interspecies interaction between organisms; interspecies interaction with other organisms
obsolete extracellular matrix component (GO:0044420)
Namespace: cellular_component
Definition: OBSOLETE. Any constituent part of the extracellular matrix, the structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals) or be part of the cell (as often seen in plants).
Synonyms: extracellular matrix part
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
obsolete extracellular region part (GO:0044421)
Namespace: cellular_component
Definition: OBSOLETE. Any constituent part of the extracellular region, the space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers constituent parts of the host cell environment outside an intracellular parasite.
Synonyms: extracellular structure
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
virion component (GO:0044423)
Namespace: cellular_component
Definition: Any constituent part of a virion, a complete fully infectious extracellular virus particle.
Synonyms: complete virus particle; virion; virion part
obsolete intracellular part (GO:0044424)
Namespace: cellular_component
Definition: OBSOLETE. Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
obsolete membrane part (GO:0044425)
Namespace: cellular_component
Definition: OBSOLETE. Any constituent part of a membrane, a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
obsolete cell wall part (GO:0044426)
Namespace: cellular_component
Definition: OBSOLETE. Any constituent part of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis.
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
obsolete chromosomal part (GO:0044427)
Namespace: cellular_component
Definition: OBSOLETE. Any constituent part of a chromosome, a structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.
Synonyms: chromosomal component; chromosome component; chromosome part
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
obsolete nuclear part (GO:0044428)
Namespace: cellular_component
Definition: OBSOLETE. Any constituent part of the nucleus, a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated.
Synonyms: nuclear subcomponent; nucleus component
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
obsolete mitochondrial part (GO:0044429)
Namespace: cellular_component
Definition: OBSOLETE. Any constituent part of a mitochondrion, a semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
Synonyms: mitochondrial subcomponent; mitochondrion component
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
obsolete cytoskeletal part (GO:0044430)
Namespace: cellular_component
Definition: OBSOLETE. Any constituent part of the cytoskeleton, a cellular scaffolding or skeleton that maintains cell shape, enables some cell motion (using structures such as flagella and cilia), and plays important roles in both intra-cellular transport (e.g. the movement of vesicles and organelles) and cellular division. Includes constituent parts of intermediate filaments, microfilaments, microtubules, and the microtrabecular lattice.
Synonyms: cytoskeletal element; cytoskeleton component
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
obsolete Golgi apparatus part (GO:0044431)
Namespace: cellular_component
Definition: OBSOLETE. Any constituent part of the Golgi apparatus, a compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack.
Synonyms: Golgi component; Golgi subcomponent
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
obsolete endoplasmic reticulum part (GO:0044432)
Namespace: cellular_component
Definition: OBSOLETE. Any constituent part of the endoplasmic reticulum, the irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae.
Synonyms: ER component
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
obsolete cytoplasmic vesicle part (GO:0044433)
Namespace: cellular_component
Definition: OBSOLETE. Any constituent part of cytoplasmic vesicle, a vesicle formed of membrane or protein, found in the cytoplasm of a cell.
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
obsolete chloroplast part (GO:0044434)
Namespace: cellular_component
Definition: OBSOLETE. Any constituent part of a chloroplast, a chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
obsolete plastid part (GO:0044435)
Namespace: cellular_component
Definition: OBSOLETE. Any constituent part of a plastid, a member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
obsolete thylakoid part (GO:0044436)
Namespace: cellular_component
Definition: OBSOLETE. Any constituent part of a thylakoid, a sac-like vesicle that bears the photosynthetic pigments in photosynthetic organisms.
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.