LiteFold/GO huggingface dataset:
atrial cardiac muscle cell development (GO:0055014)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of an atrial cardiac muscle cell over time, from its formation to the mature state. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. The atrium is the part of the heart that receives blood into the organ.
Synonyms: atrial cardiomyocyte development; atrial heart muscle development
ventricular cardiac muscle cell development (GO:0055015)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of a ventricular cardiac muscle cell over time, from its formation to the mature state. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. The ventricle is the part of the heart that pumps blood out of the organ.
Synonyms: ventricular cardiomyocyte development; ventricular heart muscle cell development
cardiac muscle tissue growth (GO:0055017)
Namespace: biological_process
Definition: The increase in size or mass of a cardiac muscle, where the increase in size or mass has the specific outcome of the progression of the organism over time from one condition to another.
Synonyms: heart muscle growth
regulation of cardiac muscle fiber development (GO:0055018)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of cardiac muscle fiber development.
Synonyms: regulation of cardiac muscle fibre development; regulation of heart muscle fiber development
negative regulation of cardiac muscle fiber development (GO:0055019)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of cardiac muscle fiber development.
Synonyms: down regulation of cardiac muscle fiber development; down-regulation of cardiac muscle fiber development; downregulation of cardiac muscle fiber development; inhibition of cardiac muscle fiber development; negative regulation of cardiac muscle fibre development; negative regulation of heart muscle fiber development
negative regulation of cardiac muscle tissue growth (GO:0055022)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of cardiac muscle growth.
Synonyms: down regulation of cardiac muscle growth; down-regulation of cardiac muscle growth; downregulation of cardiac muscle growth; inhibition of cardiac muscle growth; negative regulation of heart muscle growth
positive regulation of cardiac muscle tissue growth (GO:0055023)
Namespace: biological_process
Definition: Any process that activates, maintains or increases the frequency, rate or extent of cardiac muscle growth.
Synonyms: activation of cardiac muscle growth; positive regulation of heart muscle growth; stimulation of cardiac muscle growth; up regulation of cardiac muscle growth; up-regulation of cardiac muscle growth; upregulation of cardiac muscle growth
regulation of cardiac muscle tissue development (GO:0055024)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of cardiac muscle tissue development.
Synonyms: regulation of heart muscle development
positive regulation of cardiac muscle tissue development (GO:0055025)
Namespace: biological_process
Definition: Any process that activates, maintains or increases the frequency, rate or extent of cardiac muscle tissue development.
Synonyms: activation of cardiac muscle development; positive regulation of heart muscle development; stimulation of cardiac muscle development; up regulation of cardiac muscle development; up-regulation of cardiac muscle development; upregulation of cardiac muscle development
negative regulation of cardiac muscle tissue development (GO:0055026)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of cardiac muscle tissue development.
Synonyms: down regulation of cardiac muscle development; down-regulation of cardiac muscle development; downregulation of cardiac muscle development; inhibition of cardiac muscle development; negative regulation of heart muscle development
cortical microtubule (GO:0055028)
Namespace: cellular_component
Definition: Arrays of microtubules underlying and connected to the plasma membrane in the cortical cytosol.
nuclear DNA-directed RNA polymerase complex (GO:0055029)
Namespace: cellular_component
Definition: A protein complex, located in the nucleus, that possesses DNA-directed RNA polymerase activity.
Bolwig's organ development (GO:0055034)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the Bolwig's organ over time, from its formation to the mature structure. The larval eye in Drosophila is a relatively simple sensory system composed of Bolwig's organs: two clusters, each composed of 12 photoreceptor cells from which axons extend in a single fascicle to the brain.
plastid thylakoid membrane (GO:0055035)
Namespace: cellular_component
Definition: The lipid bilayer membrane of any thylakoid within a plastid.
virion membrane (GO:0055036)
Namespace: cellular_component
Definition: The lipid bilayer surrounding a virion.
recycling endosome (GO:0055037)
Namespace: cellular_component
Definition: An organelle consisting of a network of tubules that functions in targeting molecules, such as receptors transporters and lipids, to the plasma membrane.
Synonyms: endosomal recycling compartment; endosome recycling compartment; ERC
recycling endosome membrane (GO:0055038)
Namespace: cellular_component
Definition: The lipid bilayer surrounding a recycling endosome.
trichocyst (GO:0055039)
Namespace: cellular_component
Definition: A crystalline exocytotic organelle composed of small, acidic proteins existing primarily as disulphide-linked dimers. The trichocyst is an organelle that releases long filamentous proteins that capture predators in net-like structures, to slow them down when the cell is disturbed. The protein is nontoxic and shaped like a long, striated, fibrous shaft.
periplasmic flagellum (GO:0055040)
Namespace: cellular_component
Definition: Flagellar filaments located in the periplasmic space; characterized in spirochetes, in which they are essential for shape and motility. Composed of a core surrounded by two sheath layers, the flagella rotate to allow migration of the cell through viscous media, which would not be possible using external flagella.
cyclopentanol dehydrogenase activity (GO:0055041)
Namespace: molecular_function
Definition: Catalysis of the reaction: cyclopentanol + NAD+ = cyclopentanone + H+ + NADH.
Synonyms: cyclopentanol:NAD+ oxidoreductase activity; cyclopentanol:NADP+ oxidoreductase activity
obsolete 5-valerolactone hydrolase activity (GO:0055042)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: 5-valerolactone + H2O = 5-hydroxyvalerate.
Comment: This term was obsoleted because it represents a specific substrate.
obsolete 5-oxovalerate dehydrogenase activity (GO:0055043)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: 5-oxovalerate + NADP+ + H2O = glutarate + NADPH + H+.
Comment: This term was obsoleted because it represents a specific substrate.
symplast (GO:0055044)
Namespace: cellular_component
Definition: The interconnected cell membranes and intracellular regions of a plant. The interconnections occur via the plasmodesmata.
antipodal cell degeneration (GO:0055045)
Namespace: biological_process
Definition: The process in which the antipodal cells undergo programmed cell death.
microgametogenesis (GO:0055046)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the pollen grain over time, from its formation as the microspore to the mature structure.
Synonyms: pollen development from the microspore
anastral spindle assembly (GO:0055048)
Namespace: biological_process
Definition: The aggregation, arrangement and bonding together of a set of components to form the spindle, the array of microtubules and associated molecules that serves to move duplicated chromosomes apart, in the absence of centrosomes. Formation is initiated by the nucleation of microtubules (MTs) in the vicinity of condensed chromatin. MTs then attach to and congress around the chromatin due to activity of microtubule motors. A bipolar spindle is formed by focusing of the terminal ends of the MT array into spindle poles by molecular motors and cross-linking proteins.
obsolete astral spindle assembly (GO:0055049)
Namespace: biological_process
Definition: OBSOLETE. The aggregation, arrangement and bonding together of a set of components to form the spindle, the array of microtubules and associated molecules that serves to move duplicated chromosomes apart, in the presence of centrosomes.
Comment: The reason for obsoletion is that the term is not clearly defined and usage has been inconsistent.
obsolete astral spindle assembly involved in male meiosis (GO:0055050)
Namespace: biological_process
Definition: OBSOLETE. The aggregation, arrangement and bonding together of a set of components to form the astral spindle in male meiotic cells.
Comment: The reason for obsoletion is that the term is not clearly defined and usage has been inconsistent.
ATP-binding cassette (ABC) transporter complex, integrated substrate binding (GO:0055051)
Namespace: cellular_component
Definition: A complex for the transport of metabolites out of the cell, consisting of 4 domains: two ATP-binding domains and two membrane spanning domains. In some cases, all 4 domains are contained on 1 polypeptide, while in others one ATP-binding domain and one membrane spanning domain are together on one polypeptide in what is called a half transporter. Two half-transporters come together to form a functional transporter. Transport of the substrate across the membrane is driven by the hydrolysis of ATP.
fructose:proton symporter activity (GO:0055054)
Namespace: molecular_function
Definition: Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: fructose + H+ = fructose + H+.
Synonyms: fructose:hydrogen symporter activity
obsolete glucose:proton symporter activity (GO:0055055)
Namespace: molecular_function
Definition: OBSOLETE. Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: D-glucose + H+ = D-glucose + H+. Symporter activity enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy. D-glucose is the dextrorotatory D-enantiomer of glucose.
Synonyms: D-glucose:hydrogen symporter activity
Comment: This term was obsoleted because it represents the same reaction as D-glucose:proton symporter activity ; GO_0005356.
D-glucose transmembrane transporter activity (GO:0055056)
Namespace: molecular_function
Definition: Enables the transfer of the D-enantiomer of the hexose monosaccharide glucose from one side of a membrane to the other.
neuroblast division (GO:0055057)
Namespace: biological_process
Definition: The process resulting in the physical partitioning and separation of a neuroblast into daughter cells. A neuroblast is any cell that will divide and give rise to a neuron.
Synonyms: neuroblast cell division
symmetric neuroblast division (GO:0055058)
Namespace: biological_process
Definition: The process resulting in the physical partitioning and separation of a neuroblast into two equi-potent daughter cells.
asymmetric neuroblast division (GO:0055059)
Namespace: biological_process
Definition: The process resulting in the physical partitioning and separation of a neuroblast into two daughter cells with different developmental potentials.
asymmetric neuroblast division resulting in ganglion mother cell formation (GO:0055060)
Namespace: biological_process
Definition: Any process resulting in the physical partitioning and separation of a neuroblast into a neuroblast and a ganglion mother cell.
obsolete di-, tri-valent inorganic anion homeostasis (GO:0055061)
Namespace: biological_process
Definition: OBSOLETE. Any process involved in the maintenance of an internal steady state of divalent or trivalent inorganic anions within an organism or cell.
Synonyms: di-, tri-valent inorganic anion homeostasis
Comment: This term was made obsolete because it has been split.
phosphate ion homeostasis (GO:0055062)
Namespace: biological_process
Definition: Any process involved in the maintenance of an internal steady state of phosphate ions within an organism or cell.
Synonyms: phosphate homeostasis; Pi homeostasis
chloride ion homeostasis (GO:0055064)
Namespace: biological_process
Definition: Any process involved in the maintenance of an internal steady state of chloride ions within an organism or cell.
obsolete metal ion homeostasis (GO:0055065)
Namespace: biological_process
Definition: OBSOLETE. Any process involved in the maintenance of an internal steady state of metal ions within an organism or cell.
Comment: This term was obsoleted because it is an unnecessary grouping class.
obsolete di-, tri-valent inorganic cation homeostasis (GO:0055066)
Namespace: biological_process
Definition: OBSOLETE. Any process involved in the maintenance of an internal steady state of divalent or trivalent cations within an organism or cell.
Synonyms: di-, tri-valent inorganic cation homeostasis
Comment: This term was made obsolete because it has been split.
obsolete cobalt ion homeostasis (GO:0055068)
Namespace: biological_process
Definition: OBSOLETE. Any process involved in the maintenance of an internal steady state of cobalt ions within an organism or cell.
Synonyms: cobalt homeostasis
Comment: This term was obsoleted because it is an unnecessary grouping term.
copper ion homeostasis (GO:0055070)
Namespace: biological_process
Definition: Any process involved in the maintenance of an internal steady state of copper ions within an organism or cell.
Synonyms: copper homeostasis
manganese ion homeostasis (GO:0055071)
Namespace: biological_process
Definition: Any process involved in the maintenance of an internal steady state of manganese ions within an organism or cell.
Synonyms: manganese homeostasis
obsolete iron ion homeostasis (GO:0055072)
Namespace: biological_process
Definition: OBSOLETE. Any process involved in the maintenance of an internal steady state of iron ions within an organism or cell.
Synonyms: iron homeostasis
Comment: This term was obsoleted because it represents an unnecessary grouping class.
obsolete cadmium ion homeostasis (GO:0055073)
Namespace: biological_process
Definition: OBSOLETE. Any process involved in the maintenance of an internal steady state of cadmium ions within an organism or cell.
Synonyms: cadmium homeostasis
Comment: This term was obsoleted because it is not a normal process.
potassium ion homeostasis (GO:0055075)
Namespace: biological_process
Definition: Any process involved in the maintenance of an internal steady state of potassium ions within an organism or cell.
obsolete transition metal ion homeostasis (GO:0055076)
Namespace: biological_process
Definition: OBSOLETE. Any process involved in the maintenance of an internal steady state of transition metal ions within an organism or cell. A transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver.
Comment: This term was obsoleted because it is an unnecessary grouping class.
gap junction hemi-channel activity (GO:0055077)
Namespace: molecular_function
Definition: A wide pore channel activity that enables the transport of a solute across a membrane via a gap junction hemi-channel. Two gap junction hemi-channels coupled together form a complete gap junction.
Synonyms: connexon channel activity
sodium ion homeostasis (GO:0055078)
Namespace: biological_process
Definition: Any process involved in the maintenance of an internal steady state of sodium ions within an organism or cell.
obsolete aluminum ion homeostasis (GO:0055079)
Namespace: biological_process
Definition: OBSOLETE. Any process involved in the maintenance of an internal steady state of aluminum ions within an organism or cell.
Synonyms: aluminium ion homeostasis
Comment: This term was obsoleted because this process is not believed to exist.
monoatomic cation homeostasis (GO:0055080)
Namespace: biological_process
Definition: Any process involved in the maintenance of an internal steady state of monoatomic cations within an organism or cell. Monatomic cations (also called simple cations) are cations consisting of exactly one atom.
Synonyms: cation homeostasis
intracellular chemical homeostasis (GO:0055082)
Namespace: biological_process
Definition: A homeostatic process involved in the maintenance of a steady state level of a chemical within a cell.
Synonyms: cellular chemical homeostasis
obsolete monovalent inorganic anion homeostasis (GO:0055083)
Namespace: biological_process
Definition: OBSOLETE. Any process involved in the maintenance of an internal steady state of monovalent inorganic anions within an organism or cell.
Comment: This term was obsoleted because it is an unnecessary grouping class.
transmembrane transport (GO:0055085)
Namespace: biological_process
Definition: The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.
Synonyms: ATP hydrolysis coupled transmembrane transport; membrane transport
Comment: Transmembrane transport is the transport of a solute across a lipid bilayer. Note that transport through the nuclear pore complex is not transmembrane because the nuclear membrane is a double membrane and is not traversed. For transport through the nuclear pore, consider instead the term 'nucleocytoplasmic transport ; GO:0006913' and its children. Note also that this term is not intended for use in annotating lateral movement within membranes.
nucleobase-containing small molecule metabolic process (GO:0055086)
Namespace: biological_process
Definition: The cellular chemical reactions and pathways involving a nucleobase-containing small molecule: a nucleobase, a nucleoside, or a nucleotide.
Synonyms: nucleobase, nucleoside and nucleotide metabolic process; nucleobase, nucleoside and nucleotide metabolism
Ski complex (GO:0055087)
Namespace: cellular_component
Definition: A protein complex that regulates RNA degradation by the exosome complex. In Saccharomyces the complex has a heterotetrameric stoichiometry consisting of one copy each of Ski2p and Ski3 and two copies of Ski8p.
lipid homeostasis (GO:0055088)
Namespace: biological_process
Definition: Any process involved in the maintenance of an internal steady state of lipid within an organism or cell.
fatty acid homeostasis (GO:0055089)
Namespace: biological_process
Definition: Any process involved in the maintenance of an internal steady state of fatty acid within an organism or cell.
acylglycerol homeostasis (GO:0055090)
Namespace: biological_process
Definition: Any process involved in the maintenance of an internal steady state of acylglycerol within an organism or cell.
Synonyms: glyceride homeostasis
phospholipid homeostasis (GO:0055091)
Namespace: biological_process
Definition: Any process involved in the maintenance of an internal steady state of phospholipid within an organism or cell.
sterol homeostasis (GO:0055092)
Namespace: biological_process
Definition: Any process involved in the maintenance of an internal steady state of sterol within an organism or cell.
response to hyperoxia (GO:0055093)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating increased oxygen tension.
Synonyms: response to hyperoxic stress; response to increased oxygen tension
response to lipoprotein particle (GO:0055094)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipoprotein particle stimulus.
Synonyms: response to lipoprotein particle stimulus
lipoprotein particle mediated signaling (GO:0055095)
Namespace: biological_process
Definition: The series of molecular signals mediated by the detection of a lipoprotein particle.
Synonyms: lipoprotein mediated signalling; lipoprotein particle mediated signal transduction; lipoprotein particle-mediated signaling
low-density lipoprotein particle mediated signaling (GO:0055096)
Namespace: biological_process
Definition: The series of molecular signals mediated by the detection of low-density lipoprotein particle.
Synonyms: low-density lipoprotein mediated signalling; low-density lipoprotein particle mediated signal transduction; low-density lipoprotein particle-mediated signaling
adiponectin binding (GO:0055100)
Namespace: molecular_function
Definition: Binding to adiponectin, a protein hormone produced by adipose tissue that modulates a number of metabolic processes, including glucose regulation and fatty acid catabolism.
obsolete glycerophospholipase inhibitor activity (GO:0055101)
Namespace: molecular_function
Definition: OBSOLETE. Stops, prevents or reduces the activity of a glycerophospholipase, an enzyme that catalyzes of the hydrolysis of a glycerophospholipid.
Synonyms: glycerophospholipase inhibitor activity
Comment: This term was made obsolete because it refers to a non-existent molecular function term, 'glycerophosphate activity', which also cannot be found in the literature.
lipase inhibitor activity (GO:0055102)
Namespace: molecular_function
Definition: Binds to and stops, prevents or reduces the activity of a lipase, an enzyme that catalyzes of the hydrolysis of a lipid.
ligase regulator activity (GO:0055103)
Namespace: molecular_function
Definition: Binds to and modulates the activity of a ligase.
ubiquitin-protein transferase inhibitor activity (GO:0055105)
Namespace: molecular_function
Definition: Binds to and stops, prevents or reduces the activity of a ubiquitin-protein transferase.
Golgi to secretory granule transport (GO:0055107)
Namespace: biological_process
Definition: The directed movement of proteins from the Golgi to a secretory granule. The secretory granule is a membrane-bounded particle, usually protein, formed in the granular endoplasmic reticulum and the Golgi complex.
obsolete Golgi to transport vesicle transport (GO:0055108)
Namespace: biological_process
Definition: OBSOLETE. The directed movement of proteins from the Golgi to a transport vesicle. Continuously secreted proteins are sorted into transport vesicles that fuse with the plasma membrane, releasing their contents by exocytosis.
Comment: The reason for obsoletion is that this term is equivalent to Golgi to plasma membrane transport.
invagination involved in gastrulation with mouth forming second (GO:0055109)
Namespace: biological_process
Definition: The infolding of the epithelial sheet into the embryo involved in deuterostomic gastrulation.
involution involved in gastrulation with mouth forming second (GO:0055110)
Namespace: biological_process
Definition: The inturning of an epithelial sheet over the basal surface of an outer layer involved in deuterostomic gastrulation.
ingression involved in gastrulation with mouth forming second (GO:0055111)
Namespace: biological_process
Definition: The migration of individual cells into the embryo involved in deuterostomic gastrulation.
obsolete delamination involved in gastrulation with mouth forming second (GO:0055112)
Namespace: biological_process
Definition: OBSOLETE. The splitting or migration of one epithelial sheet into two involved in the process of deuterostomic gastrulation.
Comment: This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.