LiteFold/GO huggingface dataset:
obsolete mRNA-containing ribonucleoprotein complex export from nucleus (GO:0071427)
Namespace: biological_process
Definition: OBSOLETE. The directed movement of a ribonucleoprotein complex that contains messenger RNA from the nucleus to the cytoplasm.
Synonyms: mRNA-containing ribonucleoprotein complex export from cell nucleus; mRNA-containing ribonucleoprotein complex nucleus export; mRNA-containing ribonucleoprotein complex transport from nucleus to cytoplasm; mRNA-containing RNP export from nucleus
Comment: This term has been obsoleted because it represents the transport of a carrier bound to its substrate.
obsolete rRNA-containing ribonucleoprotein complex export from nucleus (GO:0071428)
Namespace: biological_process
Definition: OBSOLETE. The directed movement of a ribonucleoprotein complex that contains ribosomal RNA from the nucleus to the cytoplasm.
Synonyms: rRNA-containing ribonucleoprotein complex export from cell nucleus; rRNA-containing ribonucleoprotein complex nucleus export; rRNA-containing ribonucleoprotein complex transport from nucleus to cytoplasm; rRNA-containing RNP export from nucleus
Comment: This term has been obsoleted because it represents the transport of a carrier bound to its substrate.
obsolete snRNA-containing ribonucleoprotein complex export from nucleus (GO:0071429)
Namespace: biological_process
Definition: OBSOLETE. The directed movement of a ribonucleoprotein complex that contains small nuclear RNA from the nucleus to the cytoplasm.
Synonyms: snRNA-containing ribonucleoprotein complex export from cell nucleus; snRNA-containing ribonucleoprotein complex nucleus export; snRNA-containing ribonucleoprotein complex transport from nucleus to cytoplasm; snRNA-containing RNP export from nucleus
Comment: This term has been obsoleted because it represents the transport of a carrier bound to its substrate.
obsolete pre-miRNA-containing ribonucleoprotein complex export from nucleus (GO:0071430)
Namespace: biological_process
Definition: OBSOLETE. The directed movement of a ribonucleoprotein complex that contains pre-microRNA from the nucleus to the cytoplasm.
Synonyms: pre-microRNA-containing ribonucleoprotein complex export from cell nucleus; pre-microRNA-containing ribonucleoprotein complex export from nucleus; pre-microRNA-containing ribonucleoprotein complex nucleus export; pre-microRNA-containing ribonucleoprotein complex transport from nucleus to cytoplasm; pre-microRNA-containing RNP export from nucleus
Comment: This term has been obsoleted because it represents the transport of a carrier bound to its substrate.
obsolete tRNA-containing ribonucleoprotein complex export from nucleus (GO:0071431)
Namespace: biological_process
Definition: OBSOLETE. The directed movement of a ribonucleoprotein complex that contains transfer RNA from the nucleus to the cytoplasm.
Synonyms: tRNA-containing ribonucleoprotein complex export from cell nucleus; tRNA-containing ribonucleoprotein complex nucleus export; tRNA-containing ribonucleoprotein complex transport from nucleus to cytoplasm; tRNA-containing RNP export from nucleus
Comment: This term has been obsoleted because it represents the transport of a carrier bound to its substrate.
obsolete peptide mating pheromone maturation involved in positive regulation of conjugation with cellular fusion (GO:0071432)
Namespace: biological_process
Definition: OBSOLETE. The formation of a mature peptide mating pheromone by proteolysis and/or modification of a peptide precursor, occurring in the context of conjugation with cellular fusion.
Synonyms: a-factor processing (proteolytic); alpha-factor maturation; mating-type peptide pheromone maturation involved in conjugation with cellular fusion; peptide mating pheromone formation involved in conjugation with cellular fusion; peptide mating pheromone processing involved in conjugation with cellular fusion
Comment: The reason for obsoletion is that this term is pre-composed and should be represented as a GO-CAM model.
cell wall repair (GO:0071433)
Namespace: biological_process
Definition: A process of cell wall organization that results in the restoration of the cell wall following damage.
cell chemotaxis to angiotensin (GO:0071434)
Namespace: biological_process
Definition: The directed movement of a motile cell in response to the presence of angiotensin.
Synonyms: angiotensin mediated chemotaxis; angiotensin-mediated cell chemotaxis
obsolete invadopodium (GO:0071437)
Namespace: cellular_component
Definition: OBSOLETE. A cell projection that emerges from the ECM-facing surface of a cell, is enriched in actin and associated cytoskeletal proteins, and displays localized proteolytic activity toward the substrate.
Comment: This term was made obsolete because an invadopodium is an abnormal structure found in cancerous or transformed cells that is out of scope of GO.
obsolete invadopodium membrane (GO:0071438)
Namespace: cellular_component
Definition: OBSOLETE. The portion of the plasma membrane surrounding an invadopodium.
Comment: This term was made obsolete because an invadopodium is an abnormal structure found in cancerous or transformed cells that is out of scope of GO.
clathrin complex (GO:0071439)
Namespace: cellular_component
Definition: A protein complex that consists of three clathrin heavy chains and three clathrin light chains, organized into a symmetrical three-legged structure called a triskelion. In clathrin-coated vesicles clathrin is the main component of the coat and forms a polymeric mechanical scaffold on the vesicle surface.
Synonyms: clathrin triskelion
obsolete regulation of histone H3-K14 acetylation (GO:0071440)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of the addition of an acetyl group to histone H3 at position 14 of the histone.
Synonyms: regulation of histone H3 acetylation at K14; regulation of histone H3K14 acetylation
Comment: This term was obsoleted because it represents a molecular function.
obsolete negative regulation of histone H3-K14 acetylation (GO:0071441)
Namespace: biological_process
Definition: OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the addition of an acetyl group to histone H3 at position 14 of the histone.
Synonyms: down regulation of histone H3-K14 acetylation; down-regulation of histone H3-K14 acetylation; downregulation of histone H3-K14 acetylation; inhibition of histone H3-K14 acetylation; negative regulation of histone H3 acetylation at K14; negative regulation of histone H3K14 acetylation
Comment: This term was obsoleted because it represents a molecular function.
obsolete positive regulation of histone H3-K14 acetylation (GO:0071442)
Namespace: biological_process
Definition: OBSOLETE. Any process that activates or increases the frequency, rate or extent of the addition of an acetyl group to histone H3 at position 14 of the histone.
Synonyms: activation of histone H3-K14 acetylation; positive regulation of histone H3 acetylation at K14; positive regulation of histone H3K14 acetylation; stimulation of histone H3-K14 acetylation; up regulation of histone H3-K14 acetylation; up-regulation of histone H3-K14 acetylation; upregulation of histone H3-K14 acetylation
Comment: This term was obsoleted because it represents a molecular function.
tDNA binding (GO:0071443)
Namespace: molecular_function
Definition: Binding to DNA sequences encoding transfer RNA.
cellular response to pheromone (GO:0071444)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pheromone stimulus.
Synonyms: cellular pheromone response
obsolete cellular response to protein stimulus (GO:0071445)
Namespace: biological_process
Definition: OBSOLETE. Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a protein stimulus.
Synonyms: cellular response to protein stimulus
Comment: This term was made obsolete because more specific terms exist.
cellular response to salicylic acid stimulus (GO:0071446)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a salicylic acid stimulus.
Synonyms: cellular response to salicylate stimulus
cellular response to hydroperoxide (GO:0071447)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydroperoxide stimulus. Hydroperoxides are monosubstitution products of hydrogen peroxide, HOOH.
cellular response to alkyl hydroperoxide (GO:0071448)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an alkyl hydroperoxide stimulus. Alkyl hydroperoxides are monosubstitution products of hydrogen peroxide, HOOH, where the substituent is an alkyl group.
cellular response to lipid hydroperoxide (GO:0071449)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipid hydroperoxide stimulus. Lipid hydroperoxide is the highly reactive primary oxygenated products of polyunsaturated fatty acids.
Synonyms: cellular response to LHPO
cellular response to oxygen radical (GO:0071450)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an oxygen radical stimulus. An oxygen radical is any oxygen species that carries a free electron; examples include hydroxyl radicals and the superoxide anion.
cellular response to superoxide (GO:0071451)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a superoxide stimulus. Superoxide is the anion, oxygen-, formed by addition of one electron to dioxygen (O2) or any compound containing the superoxide anion.
cellular response to singlet oxygen (GO:0071452)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a singlet oxygen stimulus. Singlet oxygen is a dioxygen (O2) molecule in which two 2p electrons have similar spin. Singlet oxygen is more highly reactive than the form in which these electrons are of opposite spin, and it is produced in mutant chloroplasts lacking carotenoids and by leukocytes during metabolic burst.
cellular response to oxygen levels (GO:0071453)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of oxygen.
Synonyms: cellular response to oxygen
cellular response to anoxia (GO:0071454)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating a decline in oxygen levels to trace amounts, <0.1%.
Synonyms: cellular response to anaerobic conditions; cellular response to anoxic stress
Comment: Note that this term should not be confused with 'cellular response to hypoxia ; GO:0071456'.
cellular response to hyperoxia (GO:0071455)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating increased oxygen tension.
Synonyms: cellular response to hyperoxic stress; cellular response to increased oxygen tension
cellular response to hypoxia (GO:0071456)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level.
Synonyms: cellular response to hypoxic stress; cellular response to lowered oxygen tension
Comment: Note that this term should not be confused with 'cellular response to anoxia ; GO:0071454'. Note that in laboratory studies, hypoxia is typically studied at O2 concentrations ranging from 0.1 - 5%.
obsolete integral component of cytoplasmic side of endoplasmic reticulum membrane (GO:0071458)
Namespace: cellular_component
Definition: OBSOLETE. The component of the endoplasmic reticulum membrane consisting of the gene products that penetrate only the cytoplasmic side of the membrane.
Synonyms: integral to cytosolic leaflet of endoplasmic reticulum membrane; integral to cytosolic side of endoplasmic reticulum membrane; integral to cytosolic side of ER membrane; integral to ER membrane, cytosolic side
Comment: This term was obsoleted because it represents protein topology, not a cellular component.
protein localization to chromosome, centromeric region (GO:0071459)
Namespace: biological_process
Definition: Any process in which a protein is transported to, or maintained at, the centromeric region of a chromosome.
Synonyms: protein localisation to chromosome, centromeric region; protein localization to centromere; protein localization to chromosome, centric region
cellular response to cell-matrix adhesion (GO:0071460)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of cell-matrix adhesion.
cellular response to redox state (GO:0071461)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating redox state. Redox state refers to the balance of oxidized versus reduced forms of electron donors and acceptors in an organelle, cell or organ; plastoquinone, glutathione (GSH/GSSG), and nicotinamide nucleotides (NAD+/NADH and NADP+/NADPH) are among the most important.
Synonyms: cellular redox signal response
cellular response to water stimulus (GO:0071462)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of water.
cellular response to humidity (GO:0071463)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a humidity stimulus, moisture in the atmosphere.
cellular response to hydrostatic pressure (GO:0071464)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrostatic pressure stimulus. Hydrostatic pressure is the force acting on an object in a system where the fluid is at rest (as opposed to moving). The weight of the fluid above the object creates pressure on it.
Synonyms: cellular response to biomechanical stress; cellular response to static fluid pressure
cellular response to desiccation (GO:0071465)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a desiccation stimulus, extreme dryness resulting from the prolonged deprivation of water.
Synonyms: desiccation tolerance
cellular response to xenobiotic stimulus (GO:0071466)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a xenobiotic, a compound foreign to the organism exposed to it. It may be synthesized by another organism (like ampicilin) or it can be a synthetic chemical.
Synonyms: cellular response to drug
cellular response to acidic pH (GO:0071468)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pH stimulus with pH < 7. pH is a measure of the acidity or basicity of an aqueous solution.
Synonyms: cellular response to acidity
Comment: This term should be used to annotate instances where a cell is responding to a chemical that is playing the role of an acid (e.g. proton donor) and therefore lowering the pH. If instead you wish to describe a response to a specific acid as a chemical, such as the anion portion of glutamate, please annotate to the appropriate child of GO:0071229 'cellular response to acid chemical'.
cellular response to osmotic stress (GO:0071470)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell.
Synonyms: cellular osmotic response; cellular osmotic stress response
cellular response to non-ionic osmotic stress (GO:0071471)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of non-ionic solutes (e.g. mannitol, sorbitol) in the environment.
cellular response to salt stress (GO:0071472)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
Synonyms: cellular response to ionic osmotic stress; cellular salinity response
cellular response to cation stress (GO:0071473)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of cation stress, an increase or decrease in the concentration of positively charged ions in the environment.
cellular hyperosmotic response (GO:0071474)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a hyperosmotic environment, i.e. an environment with a higher concentration of solutes than the organism or cell.
Synonyms: cellular HOG response; cellular hypertonic response; cellular response to hypertonicity
cellular hyperosmotic salinity response (GO:0071475)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, an increase in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
Synonyms: cellular response to hyperosmotic salt stress
cellular hypotonic salinity response (GO:0071477)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
Synonyms: cellular response to hypotonic salt stress
cellular response to radiation (GO:0071478)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electromagnetic radiation stimulus. Electromagnetic radiation is a propagating wave in space with electric and magnetic components. These components oscillate at right angles to each other and to the direction of propagation.
Synonyms: cellular response to electromagnetic radiation stimulus; cellular response to radiation stimulus
Comment: Note that 'radiation' refers to electromagnetic radiation of any wavelength.
cellular response to ionizing radiation (GO:0071479)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ionizing radiation stimulus. Ionizing radiation is radiation with sufficient energy to remove electrons from atoms and may arise from spontaneous decay of unstable isotopes, resulting in alpha and beta particles and gamma rays. Ionizing radiation also includes X-rays.
Synonyms: cellular response to ionising radiation; cellular response to ionizing radiation stimulus
cellular response to gamma radiation (GO:0071480)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gamma radiation stimulus. Gamma radiation is a form of electromagnetic radiation (EMR) or light emission of a specific frequency produced from sub-atomic particle interaction, such as electron-positron annihilation and radioactive decay. Gamma rays are generally characterized as EMR having the highest frequency and energy, and also the shortest wavelength, within the electromagnetic radiation spectrum.
Synonyms: cellular response to gamma ray; cellular response to gamma-ray photon
cellular response to X-ray (GO:0071481)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of X-ray radiation. An X-ray is a form of electromagnetic radiation with a wavelength in the range of 10 nanometers to 100 picometers (corresponding to frequencies in the range 30 PHz to 3 EHz).
Synonyms: cellular response to X-ray radiation stimulus
cellular response to light stimulus (GO:0071482)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
cellular response to blue light (GO:0071483)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a blue light stimulus. Blue light is electromagnetic radiation with a wavelength of between 440 and 500nm.
Synonyms: cellular response to blue light stimulus
cellular response to light intensity (GO:0071484)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light intensity stimulus.