LiteFold/GO huggingface dataset:
oocyte morphogenesis (GO:0048601)
Namespace: biological_process
Definition: The process in which the structures of an oocyte are generated and organized. This process occurs while the initially relatively unspecialized cell is acquiring the specialized features of an oocyte.
Synonyms: oocyte morphogenesis during differentiation
reproductive structure development (GO:0048608)
Namespace: biological_process
Definition: The reproductive developmental process whose specific outcome is the progression of somatic structures that will be used in the process of creating new individuals from one or more parents, from their formation to the mature structures.
multicellular organismal reproductive process (GO:0048609)
Namespace: biological_process
Definition: The process, occurring above the cellular level, that is pertinent to the reproductive function of a multicellular organism. This includes the integrated processes at the level of tissues and organs.
Synonyms: organismal reproductive process; reproductive process in a multicellular organism
obsolete cellular process involved in reproduction (GO:0048610)
Namespace: biological_process
Definition: OBSOLETE. A process, occurring at the cellular level, that is involved in the reproductive function of a multicellular or single-celled organism.
Synonyms: cellular process involved in reproduction; reproductive cellular process
Comment: This process was made obsolete because we felt it not provide a particularly useful classification, and its very broad logical definition caused regular problems in our inference pipelines.
post-embryonic ectodermal digestive tract development (GO:0048612)
Namespace: biological_process
Definition: The process, occurring during the post-embryonic phase, whose specific outcome is the progression of the ectodermal gut over time, from its formation to the mature structure.
Synonyms: post-embryonic ectodermal gut development
embryonic anterior midgut (ectodermal) morphogenesis (GO:0048615)
Namespace: biological_process
Definition: The process in which the anatomical structures of the anterior midgut (ectodermal) are generated and organized, during the embryonic phase.
post-embryonic anterior midgut (ectodermal) morphogenesis (GO:0048616)
Namespace: biological_process
Definition: The process in which the anatomical structures of the anterior midgut (ectodermal) are generated and organized, during the post-embryonic phase.
embryonic foregut morphogenesis (GO:0048617)
Namespace: biological_process
Definition: The process in which the anatomical structures of the foregut are generated and organized, during the embryonic phase.
post-embryonic foregut morphogenesis (GO:0048618)
Namespace: biological_process
Definition: The process in which the anatomical structures of the foregut are generated and organized, during the post-embryonic phase.
embryonic hindgut morphogenesis (GO:0048619)
Namespace: biological_process
Definition: The process in which the anatomical structures of the hindgut are generated and organized, during the embryonic phase.
post-embryonic hindgut morphogenesis (GO:0048620)
Namespace: biological_process
Definition: The process in which the anatomical structures of the hindgut are generated and organized, during the post-embryonic phase.
post-embryonic digestive tract morphogenesis (GO:0048621)
Namespace: biological_process
Definition: The process, occurring during the post-embryonic phase, by which the anatomical structures of the digestive tract are generated and organized. The digestive tract is the anatomical structure through which food passes and is processed.
Synonyms: post-embryonic gut morphogenesis
obsolete reproductive sporulation (GO:0048622)
Namespace: biological_process
Definition: OBSOLETE. The formation of reproductive spores.
Synonyms: reproductive sporulation
Comment: This term was made obsolete because it was ambiguously defined and incorrectly placed in the ontology.
seed germination on parent plant (GO:0048623)
Namespace: biological_process
Definition: The process in which a seed germinates before being shed from the parent plant.
Synonyms: non-vegetative vivipary; pre-harvest sprouting; vivipary
plantlet formation on parent plant (GO:0048624)
Namespace: biological_process
Definition: The process in which a new plantlet develops from a meristem on the plant body. As part of this process, when the plantlet is large enough to live independently, the physical connection between the new plantlet and the main plant is severed.
Synonyms: vegetative vivipary; vivipary
myoblast fate commitment (GO:0048625)
Namespace: biological_process
Definition: The process in which the developmental fate of a cell becomes restricted such that it will develop into a myoblast. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers.
myoblast fate specification (GO:0048626)
Namespace: biological_process
Definition: The process in which a cell becomes capable of differentiating autonomously into a myoblast in an environment that is neutral with respect to the developmental pathway. Upon specification, the cell fate can be reversed. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers.
myoblast development (GO:0048627)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the myoblast over time, from its formation to the mature structure. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers.
myoblast maturation (GO:0048628)
Namespace: biological_process
Definition: A developmental process, independent of morphogenetic (shape) change, that is required for a myoblast to attain its fully functional state. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers.
trichome patterning (GO:0048629)
Namespace: biological_process
Definition: The regionalization process of establishing the non-random spatial arrangement of trichomes on the surface and margin of a leaf. Process involves signaling between adjacent epidermal cells that results in differentiation of some epidermal cells into trichomes.
Synonyms: trichome distribution; trichome pattern biosynthesis; trichome pattern formation; trichome pattern specification; trichome spacing
skeletal muscle tissue growth (GO:0048630)
Namespace: biological_process
Definition: The increase in size or mass of a skeletal muscle. This may be due to a change in the fiber number or size.
regulation of skeletal muscle tissue growth (GO:0048631)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of skeletal muscle growth.
negative regulation of skeletal muscle tissue growth (GO:0048632)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of skeletal muscle growth.
Synonyms: down regulation of skeletal muscle growth; down-regulation of skeletal muscle growth; downregulation of skeletal muscle growth; inhibition of skeletal muscle growth
positive regulation of skeletal muscle tissue growth (GO:0048633)
Namespace: biological_process
Definition: Any process that activates, maintains or increases the rate of skeletal muscle growth.
Synonyms: activation of skeletal muscle growth; stimulation of skeletal muscle growth; up regulation of skeletal muscle growth; up-regulation of skeletal muscle growth; upregulation of skeletal muscle growth
negative regulation of muscle organ development (GO:0048635)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of muscle development.
Synonyms: down regulation of muscle development; down-regulation of muscle development; downregulation of muscle development; inhibition of muscle development
positive regulation of muscle organ development (GO:0048636)
Namespace: biological_process
Definition: Any process that activates, maintains or increases the rate of muscle development.
Synonyms: activation of muscle development; stimulation of muscle development; up regulation of muscle development; up-regulation of muscle development; upregulation of muscle development
regulation of developmental growth (GO:0048638)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of developmental growth.
positive regulation of developmental growth (GO:0048639)
Namespace: biological_process
Definition: Any process that activates, maintains or increases the rate of developmental growth.
Synonyms: activation of developmental growth; stimulation of developmental growth; up regulation of developmental growth; up-regulation of developmental growth; upregulation of developmental growth
negative regulation of developmental growth (GO:0048640)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of developmental growth.
Synonyms: down regulation of developmental growth; down-regulation of developmental growth; downregulation of developmental growth; inhibition of developmental growth
regulation of skeletal muscle tissue development (GO:0048641)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of skeletal muscle tissue development.
negative regulation of skeletal muscle tissue development (GO:0048642)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of skeletal muscle tissue development.
Synonyms: down regulation of skeletal muscle development; down-regulation of skeletal muscle development; downregulation of skeletal muscle development; inhibition of skeletal muscle development
positive regulation of skeletal muscle tissue development (GO:0048643)
Namespace: biological_process
Definition: Any process that activates, maintains or increases the rate of skeletal muscle tissue development.
Synonyms: activation of skeletal muscle development; stimulation of skeletal muscle development; up regulation of skeletal muscle development; up-regulation of skeletal muscle development; upregulation of skeletal muscle development
animal organ formation (GO:0048645)
Namespace: biological_process
Definition: The process pertaining to the initial formation of an animal organ from unspecified parts. The process begins with the specific processes that contribute to the appearance of the discrete structure, such as inductive events, and ends when the structural rudiment of the organ is recognizable, such as a condensation of mesenchymal cells into the organ rudiment. Organs are a natural part or structure in an animal or a plant, capable of performing some special action (termed its function), which is essential to the life or well-being of the whole. The heart and lungs are organs of animals, and the petal and leaf are organs of plants. In animals the organs are generally made up of several tissues, one of which usually predominates, and determines the principal function of the organ.
Synonyms: animal organ primordium initiation; initiation of an animal organ primordium
anatomical structure formation involved in morphogenesis (GO:0048646)
Namespace: biological_process
Definition: The developmental process pertaining to the initial formation of an anatomical structure from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome.
Synonyms: formation of an anatomical structure involved in morphogenesis
Comment: Note that, for example, the formation of a pseudopod in an amoeba would not be considered formation involved in morphogenesis because it would not be thought of as the formation of an anatomical structure that was part of the shaping of the amoeba during its development. The formation of an axon from a neuron would be considered the formation of an anatomical structure involved in morphogenesis because it contributes to the creation of the form of the neuron in a developmental sense.
polyphenic determination (GO:0048647)
Namespace: biological_process
Definition: The process in which individuals that have the potential to develop any of several possible distinct developmental paths have their individual developmental fates determined in response to environmental and/or genetic cues.
caste determination (GO:0048648)
Namespace: biological_process
Definition: The process in which individuals, having the potential to develop any of several distinct developmental paths, have their individual developmental fate determined in response to environmental and/or genetic cues. Individuals with distinct developmental fates perform different functions in a colony of social insects.
caste determination, influence by genetic factors (GO:0048649)
Namespace: biological_process
Definition: The process in which individuals, having the potential to develop any of several distinct developmental paths, have their individual developmental fate determined in response to genetic cues. Individuals with distinct developmental fates perform different functions in a colony of social insects.
caste determination, influence by environmental factors (GO:0048650)
Namespace: biological_process
Definition: The process in which individuals, having the potential to develop any of several distinct developmental paths, have their individual developmental fate determined in response to environmental cues. Individuals with distinct developmental fates perform different functions in a colony of social insects.
polyphenic determination, influence by environmental factors (GO:0048651)
Namespace: biological_process
Definition: The process in which individuals that have the potential to develop any of several possible distinct developmental paths have their individual developmental fates determined in response to environmental cues.
polyphenic determination, influence by genetic factors (GO:0048652)
Namespace: biological_process
Definition: The process in which individuals that have the potential to develop any of several possible distinct developmental paths have their individual developmental fates determined in response to genetic cues.
anther development (GO:0048653)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the anther over time, from its formation to the mature structure.
anther morphogenesis (GO:0048654)
Namespace: biological_process
Definition: The process in which the anatomical structures of the anther are generated and organized.
anther wall tapetum morphogenesis (GO:0048655)
Namespace: biological_process
Definition: The process in which the anatomical structures of the anther wall tapetum are generated and organized. The anther wall tapetum is a layer of cells that provides a source of nutrition for the pollen grains as they mature.
Synonyms: differentiation of tapetal layer; tapetal layer morphogenesis; tapetum morphogenesis
anther wall tapetum formation (GO:0048656)
Namespace: biological_process
Definition: The process that gives rise to the anther wall tapetum. This process pertains to the initial formation of a structure from unspecified parts. The anther wall tapetum is a layer of cells that provides a source of nutrition for the pollen grains as they mature.
Synonyms: tapetal layer formation; tapetum formation
anther wall tapetum development (GO:0048658)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the anther wall tapetum over time, from its formation to the mature structure.
Synonyms: tapetal layer development; tapetum development
smooth muscle cell proliferation (GO:0048659)
Namespace: biological_process
Definition: The multiplication or reproduction of smooth muscle cells, resulting in the expansion of a cell population.
Synonyms: SMC proliferation
regulation of smooth muscle cell proliferation (GO:0048660)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of smooth muscle cell proliferation.
Synonyms: regulation of SMC proliferation
positive regulation of smooth muscle cell proliferation (GO:0048661)
Namespace: biological_process
Definition: Any process that activates or increases the rate or extent of smooth muscle cell proliferation.
Synonyms: activation of smooth muscle cell proliferation; positive regulation of SMC proliferation; stimulation of smooth muscle cell proliferation; up regulation of smooth muscle cell proliferation; up-regulation of smooth muscle cell proliferation; upregulation of smooth muscle cell proliferation
negative regulation of smooth muscle cell proliferation (GO:0048662)
Namespace: biological_process
Definition: Any process that stops, prevents or reduces the rate or extent of smooth muscle cell proliferation.
Synonyms: down regulation of smooth muscle cell proliferation; down-regulation of smooth muscle cell proliferation; downregulation of smooth muscle cell proliferation; inhibition of smooth muscle cell proliferation; negative regulation of SMC proliferation
neuron fate specification (GO:0048665)
Namespace: biological_process
Definition: The process in which a cell becomes capable of differentiating autonomously into a neuron in an environment that is neutral with respect to the developmental pathway. Upon specification, the cell fate can be reversed.
collateral sprouting (GO:0048668)
Namespace: biological_process
Definition: The process in which outgrowths develop from the shafts of existing axons.
Synonyms: axon branching
collateral sprouting in absence of injury (GO:0048669)
Namespace: biological_process
Definition: The process in which outgrowths develop from the axons of intact undamaged neurons.
regulation of collateral sprouting (GO:0048670)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of collateral sprouting.
negative regulation of collateral sprouting (GO:0048671)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of collateral sprouting.
Synonyms: down regulation of collateral sprouting; down-regulation of collateral sprouting; downregulation of collateral sprouting; inhibition of collateral sprouting
collateral sprouting of intact axon in response to injury (GO:0048673)
Namespace: biological_process
Definition: The process in which outgrowths develop from the axons of intact undamaged neurons as a result of injury to an axon. The collateral sprouts typically appear from undamaged axons in a tissue which has had part of its nerve supply removed, and they can often innervate successfully any cells that have lost some or all of their original synaptic input.
collateral sprouting of injured axon (GO:0048674)
Namespace: biological_process
Definition: The process resulting in reformation of a growth cone by the tip of an injured axon, or in collateral sprouting of the axon. Collateral sprouting is the process in which outgrowths develop from the shafts of existing axons.
axon extension (GO:0048675)
Namespace: biological_process
Definition: Long distance growth of a single axon process involved in cellular development.
Synonyms: axon extension involved in development
axon extension involved in regeneration (GO:0048677)
Namespace: biological_process
Definition: Long distance growth of a single axon process involved in regeneration of the neuron.
response to axon injury (GO:0048678)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an axon injury stimulus.
regulation of axon regeneration (GO:0048679)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of axon regeneration.
positive regulation of axon regeneration (GO:0048680)
Namespace: biological_process
Definition: Any process that activates, maintains or increases the rate of axon regeneration.
Synonyms: activation of axon regeneration; stimulation of axon regeneration; up regulation of axon regeneration; up-regulation of axon regeneration; upregulation of axon regeneration
negative regulation of axon regeneration (GO:0048681)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of axon regeneration.
Synonyms: down regulation of axon regeneration; down-regulation of axon regeneration; downregulation of axon regeneration; inhibition of axon regeneration
regulation of collateral sprouting of intact axon in response to injury (GO:0048683)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of collateral sprouting of an intact axon as a result of injury to an axon.
positive regulation of collateral sprouting of intact axon in response to injury (GO:0048684)
Namespace: biological_process
Definition: Any process that activates, maintains or increases the rate of collateral sprouting of an intact axon as a result of injury to an axon.
Synonyms: activation of collateral sprouting of intact axon in response to injury; stimulation of collateral sprouting of intact axon in response to injury; up regulation of collateral sprouting of intact axon in response to injury; up-regulation of collateral sprouting of intact axon in response to injury; upregulation of collateral sprouting of intact axon in response to injury
negative regulation of collateral sprouting of intact axon in response to injury (GO:0048685)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of collateral sprouting of an intact axon as a result of injury to an axon.
Synonyms: down regulation of collateral sprouting of intact axon in response to injury; down-regulation of collateral sprouting of intact axon in response to injury; downregulation of collateral sprouting of intact axon in response to injury; inhibition of collateral sprouting of intact axon in response to injury
regulation of sprouting of injured axon (GO:0048686)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of sprouting of an injured axon.
positive regulation of sprouting of injured axon (GO:0048687)
Namespace: biological_process
Definition: Any process that activates, maintains or increases the rate of sprouting of an injured axon.
Synonyms: activation of sprouting of injured axon; stimulation of sprouting of injured axon; up regulation of sprouting of injured axon; up-regulation of sprouting of injured axon; upregulation of sprouting of injured axon
negative regulation of sprouting of injured axon (GO:0048688)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of sprouting of an injured axon.
Synonyms: down regulation of sprouting of injured axon; down-regulation of sprouting of injured axon; downregulation of sprouting of injured axon; inhibition of sprouting of injured axon
formation of growth cone in injured axon (GO:0048689)
Namespace: biological_process
Definition: The formation of a growth cone in an injured axon.
obsolete regulation of axon extension involved in regeneration (GO:0048690)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of axon extension involved in regeneration.
Comment: This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.