LiteFold/GO huggingface dataset:
obsolete coenzyme B metabolic process (GO:0019297)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving coenzyme B (7-mercaptoheptanoylthreonine phosphate), a coenzyme involved in the utilization of methane by methanogenic prokaryotes.
Synonyms: coenzyme B metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
coenzyme B biosynthetic process (GO:0019298)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of coenzyme B (7-mercaptoheptanoylthreonine phosphate), a coenzyme involved in the utilization of methane by methanogenic prokaryotes.
Synonyms: coenzyme B anabolism; coenzyme B biosynthesis; coenzyme B formation; coenzyme B synthesis
obsolete rhamnose metabolic process (GO:0019299)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving rhamnose, the hexose 6-deoxy-L-mannose. Rhamnose occurs commonly as a compound of plant glycosides, in polysaccharides of gums and mucilages, and in bacterial polysaccharides. It is also a component of some plant cell wall polysaccharides and frequently acts as the sugar components of flavonoids.
Synonyms: rhamnose metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
rhamnose biosynthetic process (GO:0019300)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of rhamnose, the hexose 6-deoxy-L-mannose.
Synonyms: rhamnose anabolism; rhamnose biosynthesis; rhamnose formation; rhamnose synthesis
rhamnose catabolic process (GO:0019301)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of rhamnose, the hexose 6-deoxy-L-mannose.
Synonyms: rhamnose breakdown; rhamnose catabolism; rhamnose degradation
D-ribose biosynthetic process (GO:0019302)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of D-ribose, (ribo-pentose).
Synonyms: D-ribose anabolism; D-ribose biosynthesis; D-ribose formation; D-ribose synthesis
D-ribose catabolic process (GO:0019303)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of D-ribose (ribo-pentose).
Synonyms: D-ribose breakdown; D-ribose catabolism; D-ribose degradation
obsolete anaerobic rhamnose catabolic process (GO:0019304)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the breakdown of rhamnose, the hexose 6-deoxy-L-mannose, that occurs in the absence of oxygen.
Comment: The reason for obsoletion is that this term lacks annotations or supporting evidence, and the MetaCyc pathways for L-rhamnose degradation are not described as anaerobic.
dTDP-rhamnose biosynthetic process (GO:0019305)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of dTDP-rhamnose, a substance composed of rhamnose in glycosidic linkage with deoxyribosylthymine diphosphate.
Synonyms: dTDP-rhamnose anabolism; dTDP-rhamnose biosynthesis; dTDP-rhamnose formation; dTDP-rhamnose synthesis
GDP-D-rhamnose biosynthetic process (GO:0019306)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of GDP-D-rhamnose, a substance composed of rhamnose in glycosidic linkage with guanosine diphosphate.
Synonyms: GDP-D-rhamnose anabolism; GDP-D-rhamnose biosynthesis; GDP-D-rhamnose formation; GDP-D-rhamnose synthesis
mannose biosynthetic process (GO:0019307)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of mannose, the aldohexose manno-hexose, the C-2 epimer of glucose.
Synonyms: mannose anabolism; mannose biosynthesis; mannose formation; mannose synthesis
dTDP-mannose biosynthetic process (GO:0019308)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of dTDP-mannose, a substance composed of mannose in glycosidic linkage with deoxyribosylthymine diphosphate.
Synonyms: dTDP-mannose anabolism; dTDP-mannose biosynthesis; dTDP-mannose formation; dTDP-mannose synthesis
mannose catabolic process (GO:0019309)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of mannose, the aldohexose manno-hexose, the C-2 epimer of glucose.
Synonyms: mannose breakdown; mannose catabolism; mannose degradation
inositol catabolic process (GO:0019310)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of inositol, 1,2,3,4,5,6-cyclohexanehexol, a growth factor for animals and microorganisms.
Synonyms: inositol breakdown; inositol catabolism; inositol degradation; myo-inositol catabolic process; myo-inositol catabolism; vitamin Bh catabolic process; vitamin Bh catabolism
obsolete sorbose metabolic process (GO:0019311)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving sorbose, the ketohexose xylo-2-hexulose. Sorbose is produced commercially by fermentation and is used as an intermediate in the manufacture of ascorbic acid.
Synonyms: sorbose metabolism
Comment: The reason for obsoletion is that this term was an unnecessary grouping term.
obsolete L-sorbose metabolic process (GO:0019312)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving sorbose, the L-enantiomer of the ketohexose xylo-2-hexulose. L-sorbose is formed by bacterial oxidation of sorbitol.
Synonyms: L-sorbose metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
obsolete allose metabolic process (GO:0019313)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving allose, allo-hexose, an aldohexose similar to glucose, differing only in the configuration of the hydroxyl group of C-3.
Synonyms: allose metabolism
Comment: The reason for obsoletion is that this term is practically equivalent to D-allose metabolic process.
obsolete D-allose metabolic process (GO:0019314)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving D-allose, the D-enantiomer of allo-hexose, an aldohexose similar to glucose.
Synonyms: D-allose metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
D-allose biosynthetic process (GO:0019315)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of D-allose, the D-enantiomer of allo-hexose, an aldohexose similar to glucose.
Synonyms: D-allose anabolism; D-allose biosynthesis; D-allose formation; D-allose synthesis
D-allose catabolic process (GO:0019316)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of D-allose, the D-enantiomer of allo-hexose, an aldohexose similar to glucose.
Synonyms: D-allose breakdown; D-allose catabolism; D-allose degradation
obsolete fucose catabolic process (GO:0019317)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the breakdown of fucose (6-deoxygalactose).
Comment: The reason for obsoletion is that this term is redundant with its more specific child term GO:0042355 'L-fucose catabolic process'. The existing annotations appear to be specific for L-fucose based on the protein names.
hexose metabolic process (GO:0019318)
Namespace: biological_process
Definition: The chemical reactions and pathways involving a hexose, any monosaccharide with a chain of six carbon atoms in the molecule.
Synonyms: hexose metabolism
hexose biosynthetic process (GO:0019319)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of hexose, any monosaccharide with a chain of six carbon atoms in the molecule.
Synonyms: hexose anabolism; hexose biosynthesis; hexose formation; hexose synthesis
hexose catabolic process (GO:0019320)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of hexose, any monosaccharide with a chain of six carbon atoms in the molecule.
Synonyms: hexose breakdown; hexose catabolism; hexose degradation
pentose metabolic process (GO:0019321)
Namespace: biological_process
Definition: The chemical reactions and pathways involving a pentose, any monosaccharide with a chain of five carbon atoms in the molecule.
Synonyms: pentose metabolism
pentose biosynthetic process (GO:0019322)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of a pentose, any monosaccharide with a chain of five carbon atoms in the molecule.
Synonyms: pentose anabolism; pentose biosynthesis; pentose formation; pentose synthesis
obsolete anaerobic fructose catabolic process (GO:0019325)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the breakdown of fructose that occurs in the absence of oxygen.
Synonyms: anaerobic fructose breakdown; anaerobic fructose catabolism; anaerobic fructose degradation
Comment: The reason for obsoletion is that this term is not clearly defined the meaning is ambiguous.
obsolete nitrotoluene metabolic process (GO:0019326)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving nitrotoluene, any methylbenzene molecule with NO2 group(s) attached.
Synonyms: nitrotoluene metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
lead sulfide oxidation (GO:0019327)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the conversion of lead sulfide to lead sulfate.
Synonyms: lead sulphide oxidation; oxidation of galena; oxidation of lead sulfide
anaerobic gallate catabolic process (GO:0019328)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of gallate, the anion of gallic acid, in the absence of oxygen.
Synonyms: anaerobic gallate breakdown; anaerobic gallate catabolism; anaerobic gallate degradation; anaerobic gallic acid catabolic process; anaerobic gallic acid catabolism; gallate fermentation
ammonia oxidation (GO:0019329)
Namespace: biological_process
Definition: The chemical reactions and pathways by which ammonia or ammonium is converted to molecular nitrogen or another nitrogen compound, with accompanying loss of electrons.
aldoxime metabolic process (GO:0019330)
Namespace: biological_process
Definition: The chemical reactions and pathways involving aldoximes, compounds derived by the reaction of an aldose with hydroxylamine, thus containing the aldoxime group -HC=NOH.
Synonyms: aldoxime metabolism
anaerobic respiration, using ammonium as electron donor (GO:0019331)
Namespace: biological_process
Definition: The oxidation of ammonium (NH4) to nitrogen (N2) in the absence of oxygen, using nitrite (NO2) as the electron acceptor. Hydroxylamine and ammonium are combined to yield hydrazine, which is subsequently oxidized to N2.
Synonyms: ammonia oxidation; anaerobic ammonium oxidation; anammox
aerobic respiration, using nitrite as electron donor (GO:0019332)
Namespace: biological_process
Definition: The oxidation of nitrite (NO2) to nitrate (NO3), using oxygen (O2) as the electron acceptor. Nitrite oxidation is the final step in nitrification, the oxidation of ammonia to nitrate, and nitrite oxidoreductase (NOR) is the key enzyme complex that catalyzes the conversion of nitrite to nitrate in nitrite oxidizing species.
Synonyms: nitrite oxidation
denitrification pathway (GO:0019333)
Namespace: biological_process
Definition: The reduction of nitrate to dinitrogen by four reduction reactions: nitrate reduced to nitrite, then to nitric oxide, then to nitrous oxide, and finally to dinitrogen.
p-cymene catabolic process (GO:0019334)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of p-cymene, 1-methyl-4-isopropylbenzene, one of the alkyl-substituted aromatic hydrocarbons found in volatile oils from over 100 plants.
Synonyms: p-cymene breakdown; p-cymene catabolism; p-cymene degradation
methylquinoline catabolic process (GO:0019335)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of methylquinoline, an aromatic compound composed of a benzene ring and a heterocyclic N-containing ring.
Synonyms: 2-methylquinoline catabolic process; 3-methylquinoline breakdown; 3-methylquinoline catabolic process; 3-methylquinoline catabolism; 3-methylquinoline degradation; quinaldine catabolic process
phenol-containing compound catabolic process (GO:0019336)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of a phenol, any compound containing one or more hydroxyl groups directly attached to an aromatic carbon ring.
Synonyms: phenol-containing compound breakdown; phenol-containing compound catabolism; phenol-containing compound degradation
tetrachloroethylene catabolic process (GO:0019337)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of tetrachloroethylene, a derivative of ethene with the hydrogen atoms replaced by chlorines.
Synonyms: tetrachloroethene catabolic process; tetrachloroethene catabolism; tetrachloroethylene breakdown; tetrachloroethylene catabolism; tetrachloroethylene degradation
parathion catabolic process (GO:0019339)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of parathion, a highly toxic organophosphate compound. Degradation of parathion by sunlight or liver enzymes can result in the formation of the active compound paraoxon which interferes with the nervous system through cholinesterase inhibition.
Synonyms: parathion breakdown; parathion catabolism; parathion degradation
dibenzofuran catabolic process (GO:0019340)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of dibenzofuran, a substance composed of two benzene rings linked by one ether bond and one carbon-carbon bond.
Synonyms: dibenzofuran breakdown; dibenzofuran catabolism; dibenzofuran degradation
dibenzo-p-dioxin catabolic process (GO:0019341)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of dibenzo-p-dioxin, a substance composed of two benzene rings linked by two ether bonds.
Synonyms: dibenzo-p-dioxin breakdown; dibenzo-p-dioxin catabolism; dibenzo-p-dioxin degradation
transsulfuration (GO:0019346)
Namespace: biological_process
Definition: The interconversion of homocysteine and cysteine via cystathionine. In contrast with enteric bacteria and mammals, Saccharomyces cerevisiae has two transsulfuration pathways employing two separate sets of enzymes.
Synonyms: homocysteine-cysteine interconversion; transsulphuration
obsolete dolichol metabolic process (GO:0019348)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving dolichols, any 2,3-dihydropolyprenol derived from four or more linked isoprene units.
Synonyms: dolichol metabolism
Comment: This term was obsoleted because it is an unnecessary grouping term.
teichoic acid biosynthetic process (GO:0019350)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of teichoic acid, any polymer occurring in the cell wall, membrane or capsule of Gram-positive bacteria and containing chains of glycerol phosphate or ribitol phosphate residues.
Synonyms: teichoic acid anabolism; teichoic acid biosynthesis; teichoic acid formation; teichoic acid synthesis
protoporphyrinogen IX biosynthetic process from glycine (GO:0019352)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of protoporphyrinogen IX from other compounds, including glycine.
Synonyms: protoporphyrinogen IX anabolism from glycine; protoporphyrinogen IX formation from glycine; protoporphyrinogen IX synthesis from glycine
siroheme biosynthetic process (GO:0019354)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of siroheme, a tetrahydroporphyrin with adjacent, reduced pyrrole rings.
Synonyms: sirohaem biosynthesis; sirohaem biosynthetic process; siroheme anabolism; siroheme biosynthesis; siroheme formation; siroheme synthase activity; siroheme synthesis
obsolete nicotinate nucleotide biosynthetic process from tryptophan (GO:0019356)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of nicotinate nucleotide from other compounds, including tryptophan.
Synonyms: nicotinate nucleotide anabolism from tryptophan; nicotinate nucleotide formation from tryptophan; nicotinate nucleotide synthesis from tryptophan
Comment: The reason for obsoletion is that this term is essentially equivalent to 'de novo' NAD+ biosynthetic process from L-tryptophan.
nicotinate nucleotide biosynthetic process (GO:0019357)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of nicotinamide nucleotides, any nucleotide that contains combined nicotinate (pyridine 3-carboxylic acid).
Synonyms: nicotinate nucleotide anabolism; nicotinate nucleotide biosynthesis; nicotinate nucleotide formation; nicotinate nucleotide synthesis
nicotinate nucleotide salvage (GO:0019358)
Namespace: biological_process
Definition: The generation of nicotinate nucleotide without de novo synthesis.
Synonyms: nicotinate nucleotide biosynthesis, salvage pathway; nicotinate nucleotide biosynthetic process, salvage pathway
nicotinamide nucleotide biosynthetic process from niacinamide (GO:0019360)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of nicotinamide nucleotide from other compounds, including niacinamide.
Synonyms: nicotinamide nucleotide anabolism from niacinamide; nicotinamide nucleotide formation from niacinamide; nicotinamide nucleotide synthesis from niacinamide
2'-(5''-triphosphoribosyl)-3'-dephospho-CoA biosynthetic process (GO:0019361)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA, a derivative of coenzyme A.
Synonyms: 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA anabolism; 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA biosynthesis; 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA formation; 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA synthesis
obsolete pyridine nucleotide metabolic process (GO:0019362)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving a pyridine nucleotide, a nucleotide characterized by a pyridine derivative as a nitrogen base.
Synonyms: pyridine nucleotide metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
pyridine nucleotide biosynthetic process (GO:0019363)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of a pyridine nucleotide, a nucleotide characterized by a pyridine derivative as a nitrogen base.
Synonyms: pyridine nucleotide anabolism; pyridine nucleotide biosynthesis; pyridine nucleotide formation; pyridine nucleotide synthesis
pyridine nucleotide catabolic process (GO:0019364)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of a pyridine nucleotide, a nucleotide characterized by a pyridine derivative as a nitrogen base.
Synonyms: pyridine nucleotide breakdown; pyridine nucleotide catabolism; pyridine nucleotide degradation
fatty acid elongation, saturated fatty acid (GO:0019367)
Namespace: biological_process
Definition: Elongation of a saturated fatty acid chain.
fatty acid elongation, unsaturated fatty acid (GO:0019368)
Namespace: biological_process
Definition: Elongation of a fatty acid chain into which one or more C-C double bonds have been introduced.
leukotriene biosynthetic process (GO:0019370)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of leukotriene, a pharmacologically active substance derived from a polyunsaturated fatty acid, such as arachidonic acid.
Synonyms: leukotriene anabolism; leukotriene biosynthesis; leukotriene formation; leukotriene synthesis
cyclooxygenase pathway (GO:0019371)
Namespace: biological_process
Definition: The chemical reactions and pathways by which prostaglandins are formed from arachidonic acid, and in which prostaglandin-endoperoxide synthase (cyclooxygenase) catalyzes the committed step in the conversion of arachidonic acid to the prostaglandin-endoperoxides PGG2 and PGH2.
lipoxygenase pathway (GO:0019372)
Namespace: biological_process
Definition: The chemical reactions and pathways by which an unsaturated fatty acid (such as arachidonic acid or linolenic acid) is converted to other compounds, and in which the first step is hydroperoxide formation catalyzed by lipoxygenase.
epoxygenase P450 pathway (GO:0019373)
Namespace: biological_process
Definition: The chemical reactions and pathways by which arachidonic acid is converted to other compounds including epoxyeicosatrienoic acids and dihydroxyeicosatrienoic acids.
galactolipid metabolic process (GO:0019374)
Namespace: biological_process
Definition: The chemical reactions and pathways involving galactolipids, any glycolipid containing one of more residues of galactose and/or N-acetylgalactosamine.
Synonyms: galactolipid metabolism
galactolipid biosynthetic process (GO:0019375)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of galactolipids, any glycolipid containing one of more residues of galactose and/or N-acetylgalactosamine.
Synonyms: galactolipid anabolism; galactolipid biosynthesis; galactolipid formation; galactolipid synthesis
sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin) (GO:0019379)
Namespace: biological_process
Definition: The pathway by which inorganic sulfate is processed and incorporated into sulfated compounds, where the phosphoadenylyl sulfate reduction step is catalyzed by the enzyme phosphoadenylyl-sulfate reductase (thioredoxin) (EC:1.8.4.8).
Synonyms: sulphate assimilation, phosphoadenylyl sulphate reduction by a phosphoadenylyl-sulphate reductase (thioredoxin)
3-phenylpropionate catabolic process (GO:0019380)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of 3-phenylpropionate, the anion of phenylpropanoic acid.
Synonyms: 3-phenylpropionate breakdown; 3-phenylpropionate catabolism; 3-phenylpropionate degradation
atrazine catabolic process (GO:0019381)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of atrazine, a triazine ring-containing herbicide.
Synonyms: atrazine breakdown; atrazine catabolism; atrazine degradation
carbon tetrachloride catabolic process (GO:0019382)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of carbon tetrachloride, a toxic, carcinogenic compound which is used as a general solvent in industrial degreasing operations. It is also used as grain fumigant and a chemical intermediate in the production of refrigerants.
Synonyms: carbon tetrachloride breakdown; carbon tetrachloride catabolism; carbon tetrachloride degradation
(+)-camphor catabolic process (GO:0019383)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of (+)-camphor, a bicyclic monoterpene ketone.
Synonyms: (+)-camphor breakdown; (+)-camphor catabolism; (+)-camphor degradation
caprolactam catabolic process (GO:0019384)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of caprolactam, hexahydro-2h-azepin-2-one, a cyclic amide of caproic acid.
Synonyms: caprolactam breakdown; caprolactam catabolism; caprolactam degradation