LiteFold/GO huggingface dataset:
positive regulation of conjugation with cellular fusion (GO:0031139)
Namespace: biological_process
Definition: Any process that increases the rate or frequency of conjugation with cellular fusion.
Synonyms: activation of conjugation with cellular fusion; stimulation of conjugation with cellular fusion; up regulation of conjugation with cellular fusion; up-regulation of conjugation with cellular fusion; upregulation of conjugation with cellular fusion
induction of conjugation upon nutrient starvation (GO:0031140)
Namespace: biological_process
Definition: The process in which a cell initiates conjugation with cellular fusion upon starvation for one or more nutrients.
induction of conjugation upon carbon starvation (GO:0031141)
Namespace: biological_process
Definition: The process in which a cell initiates conjugation with cellular fusion upon carbon starvation.
induction of conjugation upon nitrogen starvation (GO:0031142)
Namespace: biological_process
Definition: The process in which a cell initiates conjugation with cellular fusion upon nitrogen starvation.
pseudopodium (GO:0031143)
Namespace: cellular_component
Definition: A temporary protrusion or retractile process of a cell, associated with flowing movements of the protoplasm, and serving for locomotion and feeding.
Synonyms: axopodium; lobopodium; pseudopod; pseudopodial protrusion; reticulopodium
proteasome localization (GO:0031144)
Namespace: biological_process
Definition: Any process in which the proteasome is transported to, or maintained in, a specific location.
Synonyms: establishment and maintenance of proteasome localization; proteasome localisation
anaphase-promoting complex-dependent catabolic process (GO:0031145)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome.
Synonyms: anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein breakdown; anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process; anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolism; anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein degradation; APC-dependent proteasomal ubiquitin-dependent protein catabolic process; APC-dependent proteasomal ubiquitin-dependent protein catabolism; cyclin breakdown; cyclin catabolic process; cyclin catabolism; cyclin degradation; degradation of cyclin; negative regulation of cyclin-dependent protein serine/threonine kinase by cyclin degradation
SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (GO:0031146)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by an SCF (Skp1/Cul1/F-box protein) complex, and mediated by the proteasome.
Synonyms: SCF-dependent proteasomal ubiquitin-dependent protein breakdown; SCF-dependent proteasomal ubiquitin-dependent protein catabolism; SCF-dependent proteasomal ubiquitin-dependent protein degradation
1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one metabolic process (GO:0031147)
Namespace: biological_process
Definition: The chemical reactions and pathways involving 1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one, also known as DIF-1, differentiation-inducing factor-1. DIF-1 is a secreted chlorinated molecule that controls cell fate during development of Dictyostelium cells.
Synonyms: 1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one metabolism; DIF-1 metabolic process; DIF-1 metabolism
DIF-1 biosynthetic process (GO:0031148)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of 1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one, also known as DIF-1, differentiation-inducing factor-1. DIF-1 is a secreted chlorinated molecule that controls cell fate during development of Dictyostelium cells.
Synonyms: 1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one anabolism; 1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one biosynthesis; 1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one biosynthetic process; 1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one formation; 1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one synthesis; DIF-1 biosynthesis
sorocarp stalk cell differentiation (GO:0031149)
Namespace: biological_process
Definition: The process in which a relatively unspecialized cell acquires specialized features of a sorocarp stalk cell, any of the cellulose-covered cells that form the stalk of a sorocarp. An example of this process is found in Dictyostelium discoideum.
Synonyms: stalk cell differentiation
sorocarp stalk development (GO:0031150)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the sorocarp stalk over time, from its formation to the mature structure. The sorocarp stalk is a tubular structure that consists of cellulose-covered cells stacked on top of each other and surrounded by an acellular stalk tube composed of cellulose and glycoprotein. An example of this process is found in Dictyostelium discoideum.
Synonyms: sorophore development; stalk development; stalk formation
aggregation involved in sorocarp development (GO:0031152)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the aggregate over time, from its formation to the point when a slug is formed. Aggregate development begins in response to starvation and continues by the chemoattractant-mediated movement of cells toward each other. The aggregate is a multicellular structure that gives rise to the slug.
Synonyms: aggregate development involved in sorocarp development; aggregation during fruiting body development
slug development involved in sorocarp development (GO:0031153)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the slug over time, from its formation to the mature structure. Slug development begins when the aggregate rises upwards to form a finger-shaped structure and ends when culmination begins. Slug development begins after aggregation and ends before culmination in sorocarp development.
Synonyms: migratory slug development during sorocarp development; pseudoplasmodium biosynthesis; pseudoplasmodium formation; slug development during fruiting body development; slug development during sorocarp development; standing slug development during sorocarp development
culmination involved in sorocarp development (GO:0031154)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the culminant over time, from its formation to the mature structure. Culmination begins with a morphogenetic change of the finger-like or migratory slug giving rise to an organized structure containing a stalk and a sorus. This process is the final stage of sorocarp development.
Synonyms: culminant development; culmination during fruiting body development; culmination during sorocarp development
regulation of reproductive fruiting body development (GO:0031155)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of reproductive fruiting body development.
Synonyms: regulation of fruiting body formation
regulation of sorocarp development (GO:0031156)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of sorocarp development. An example of this process is found in Dictyostelium discoideum.
Synonyms: regulation of fruiting body development; regulation of fruiting body formation
regulation of aggregate size involved in sorocarp development (GO:0031157)
Namespace: biological_process
Definition: Any process that modulates the size of the aggregate formed during sorocarp formation.
Synonyms: regulation of aggregation during fruiting body biosynthesis; regulation of aggregation during fruiting body formation
negative regulation of aggregate size involved in sorocarp development (GO:0031158)
Namespace: biological_process
Definition: Any process that decreases the size of the aggregate formed during sorocarp formation.
Synonyms: down regulation of aggregate size; down-regulation of aggregate size; downregulation of aggregate size; inhibition of aggregate size
positive regulation of aggregate size involved in sorocarp development (GO:0031159)
Namespace: biological_process
Definition: Any process that increases the size of the aggregate formed during sorocarp formation.
Synonyms: activation of aggregate size; stimulation of aggregate size; up regulation of aggregate size; up-regulation of aggregate size; upregulation of aggregate size
spore wall (GO:0031160)
Namespace: cellular_component
Definition: The specialized envelope lying outside the cell membrane of a spore.
Synonyms: spore coat
phosphatidylinositol catabolic process (GO:0031161)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of phosphatidylinositol, any glycophospholipid with its sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol.
Synonyms: phosphatidylinositol breakdown; phosphatidylinositol catabolism; phosphatidylinositol degradation; PtdIns catabolic process; PtdIns catabolism
obsolete sulfur incorporation into metallo-sulfur cluster (GO:0031162)
Namespace: biological_process
Definition: OBSOLETE. The incorporation of exogenous sulfur into a metallo-sulfur cluster.
Synonyms: sulphur incorporation into metallo-sulphur cluster
Comment: This term was obsoleted because it represents a molecular function.
metallo-sulfur cluster assembly (GO:0031163)
Namespace: biological_process
Definition: The incorporation of a metal and exogenous sulfur into a metallo-sulfur cluster.
Synonyms: metal-sulfur cluster assembly; metallo-sulfur cluster biosynthesis; metallo-sulphur cluster assembly
contractile vacuolar membrane (GO:0031164)
Namespace: cellular_component
Definition: The lipid bilayer surrounding the contractile vacuole.
Synonyms: contractile vacuole membrane
obsolete integral component of contractile vacuolar membrane (GO:0031165)
Namespace: cellular_component
Definition: OBSOLETE. The component of the contractile vacuolar membrane consisting of gene products that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
Synonyms: integral to contractile vacuolar membrane
Comment: This term was obsoleted because it represents protein topology, not a cellular component.
obsolete integral component of vacuolar membrane (GO:0031166)
Namespace: cellular_component
Definition: OBSOLETE. The component of the vacuolar membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer.
Synonyms: integral to vacuolar membrane
Comment: This term was obsoleted because it represents protein topology, not a cellular component.
rRNA methylation (GO:0031167)
Namespace: biological_process
Definition: The posttranscriptional addition of methyl groups to specific residues in an rRNA molecule.
obsolete ferrichrome metabolic process (GO:0031168)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving a ferrichrome. Ferrichromes are any of a group of growth-promoting Fe(III) chelates formed by various genera of microfungi. They are homodetic cyclic hexapeptides made up of a tripeptide of glycine (or other small neutral amino acids) and a tripeptide of an N'acyl-N4-hydroxy-L-ornithine.
Synonyms: ferrichrome metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
ferrichrome biosynthetic process (GO:0031169)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of a ferrichrome. Ferrichromes are any of a group of growth-promoting Fe(III) chelates formed by various genera of microfungi. They are homodetic cyclic hexapeptides made up of a tripeptide of glycine (or other small neutral amino acids) and a tripeptide of an N'acyl-N4-hydroxy-L-ornithine.
Synonyms: ferrichrome anabolism; ferrichrome biosynthesis; ferrichrome biosynthetic process, peptide formation; ferrichrome biosynthetic process, peptide modification; ferrichrome formation; ferrichrome synthesis
obsolete ferricrocin metabolic process (GO:0031170)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving ferricrocin, a cyclic hexapeptide siderophore with the structure Gly-Ser-Gly-(N5-acetyl-N5-hydroxyornithine)3.
Synonyms: ferricrocin metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
ferricrocin biosynthetic process (GO:0031171)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of ferricrocin, a cyclic hexapeptide siderophore with the structure Gly-Ser-Gly-(N5-acetyl-N5-hydroxyornithine)3.
Synonyms: ferricrocin anabolism; ferricrocin biosynthesis; ferricrocin biosynthetic process, peptide formation; ferricrocin biosynthetic process, peptide modification; ferricrocin formation; ferricrocin synthesis
ornithine N5-monooxygenase activity (GO:0031172)
Namespace: molecular_function
Definition: Catalysis of the reaction: L-ornithine + O2 + H+ = N5-hydroxy-L-ornithine + H2O.
Synonyms: L-ornithine 5-monooxygenase activity
otolith mineralization completed early in development (GO:0031173)
Namespace: biological_process
Definition: The formation of otoliths during embryogenesis with completion in early postembryonic development. Formation occurs by precipitation of specific crystal forms of calcium carbonate around an organic core of extracellular matrix proteins. Otoconia (otoliths) are small (~10 micron) dense extracellular particles present in the otolith end organs of the vertebrate inner ear.
Synonyms: otoconia mineralization; otoconium mineralization
lifelong otolith mineralization (GO:0031174)
Namespace: biological_process
Definition: The formation and growth of otoliths throughout the life of the organism. Otoliths are the large extracellular ear-stones of the fish inner ear, produced by precipitation of specific crystal forms of calcium carbonate on organic matrices. The otolith enlarges throughout the life of the fish, as layers of calcium carbonate are added.
neuron projection development (GO:0031175)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of a neuron projection over time, from its formation to the mature structure. A neuron projection is any process extending from a neural cell, such as axons or dendrites (collectively called neurites).
Synonyms: neurite biosynthesis; neurite development; neurite formation; neurite growth; neurite outgrowth
endo-1,4-beta-xylanase activity (GO:0031176)
Namespace: molecular_function
Definition: Catalysis of the endohydrolysis of (1->4)-beta-D-xylosidic linkages in xylans.
Synonyms: 1,4-beta-D-xylan xylanohydrolase activity; 1,4-beta-xylan xylanohydrolase activity; beta-1,4-xylan xylanohydrolase activity; beta-1,4-xylanase activity; beta-D-xylanase activity; beta-xylanase activity; endo-(1,4)-beta-xylanase(1,4)-beta-xylan 4-xylanohydrolase activity; endo-(1->4)-beta-xylanase(1->4)-beta-xylan 4-xylanohydrolase activity; endo-1,4-beta-D-xylanase activity; endo-1,4-xylanase activity; endo-beta-1,4-xylanase activity; xylanase
phosphopantetheine binding (GO:0031177)
Namespace: molecular_function
Definition: Binding to phosphopantetheine, the vitamin pantetheine 4'-(dihydrogen phosphate).
peptide modification (GO:0031179)
Namespace: biological_process
Definition: The covalent alteration of one or more amino acid residues within a peptide, resulting in a change in the properties of that peptide.
SNARE complex (GO:0031201)
Namespace: cellular_component
Definition: A protein complex involved in membrane fusion; a stable ternary complex consisting of a four-helix bundle, usually formed from one R-SNARE and three Q-SNAREs with an ionic layer sandwiched between hydrophobic layers. One well-characterized example is the neuronal SNARE complex formed of synaptobrevin 2, syntaxin 1a, and SNAP-25.
post-translational protein targeting to membrane, translocation (GO:0031204)
Namespace: biological_process
Definition: The process in which a protein translocates through the ER membrane posttranslationally.
Synonyms: posttranslational protein membrane targeting, translocation; posttranslational protein targeting to membrane, translocation; protein translocation during posttranslational protein targeting to membrane
endoplasmic reticulum Sec complex (GO:0031205)
Namespace: cellular_component
Definition: An endoplasmic reticulum membrane-associated complex involved in the translocation of proteins that are targeted to the ER. In yeast, this complex consists of two subcomplexes, namely, the Sec61 complex and the Sec62/Sec63 complex.
Sec62/Sec63 complex (GO:0031207)
Namespace: cellular_component
Definition: A protein complex involved in the posttranslational targeting of proteins to the ER. In yeast, it is a tetrameric complex consisting of Sec62p, Sec63p, Sec71p and Sec72p.
Synonyms: ER protein translocation subcomplex; Sec62/63 complex
POZ domain binding (GO:0031208)
Namespace: molecular_function
Definition: Binding to a POZ (poxvirus and zinc finger) domain of a protein, a protein-protein interaction domain found in many transcription factors.
Synonyms: broad-complex, tramtrack, and bric-a-brac domain binding; BTB domain
SCAR complex (GO:0031209)
Namespace: cellular_component
Definition: A pentameric complex that includes orthologues of human PIR121, Nap1, Abi, SCAR, and HSPC300 and regulates actin polymerization and/or depolymerization through small GTPase mediated signal transduction.
Synonyms: WAVE complex; WAVE regulatory complex; WRC
phosphatidylcholine binding (GO:0031210)
Namespace: molecular_function
Definition: Binding to a phosphatidylcholine, a glycophospholipid in which a phosphatidyl group is esterified to the hydroxyl group of choline.
endoplasmic reticulum palmitoyltransferase complex (GO:0031211)
Namespace: cellular_component
Definition: A complex of the endoplasmic reticulum that catalyzes S-palmitoylation, the addition of palmitate (C16:0) or other long-chain fatty acids to proteins at a cysteine residue.
RSF complex (GO:0031213)
Namespace: cellular_component
Definition: An ISWI complex that contains an ATPase subunit of the ISWI family (SNF2H in mammals) and an RSF1 homolog. It mediates nucleosome deposition and generates regularly spaced nucleosome arrays. In mammals, RSF is involved in regulation of transcription from RNA polymerase II promoters).
Synonyms: remodeling and spacing factor complex
biomineral tissue development (GO:0031214)
Namespace: biological_process
Definition: Formation of hard tissues that consist mainly of inorganic compounds, and also contain a small amounts of organic matrices that are believed to play important roles in their formation.
shell calcification (GO:0031215)
Namespace: biological_process
Definition: The precipitation of calcium carbonate onto the organic matrix of a shell, such as a mollusc shell.
neopullulanase activity (GO:0031216)
Namespace: molecular_function
Definition: Catalysis of the hydrolysis of pullulan to panose (6-alpha-D-glucosylmaltose).
Synonyms: pullulan 4-D-glucanohydrolase (panose-forming); pullulanase II activity
glucan 1,4-beta-glucosidase activity (GO:0031217)
Namespace: molecular_function
Definition: Catalysis of the hydrolysis of (1->4) linkages in (1->4)-beta-D-glucans, to remove successive glucose units.
Synonyms: 1,4-beta-D-glucan glucohydrolase activity; beta-1,4-beta-glucanase activity; beta-1,4-glucanase activity; exo-1,4-beta-D-glucosidase activity; exo-1,4-beta-glucanase activity; exo-1,4-beta-glucosidase activity; exo-beta-1,4-glucanase activity; exo-beta-1,4-glucosidase activity; exocellulase activity
arabinogalactan endo-1,4-beta-galactosidase activity (GO:0031218)
Namespace: molecular_function
Definition: Catalysis of the endohydrolysis of (1->4)-beta-D-galactosidic linkages in arabinogalactans.
Synonyms: arabinogalactan 4-beta-D-galactanohydrolase activity; arabinogalactanase activity; endo-1,4-beta-galactanase activity; galactanase activity
levanase activity (GO:0031219)
Namespace: molecular_function
Definition: Catalysis of the random hydrolysis of 2,6-beta-D-fructofuranosidic linkages in 2,6-beta-D-fructans (levans) containing more than 3 fructose units.
Synonyms: 2,6-beta-D-fructan fructanohydrolase activity; levan hydrolase activity
maltodextrin phosphorylase activity (GO:0031220)
Namespace: molecular_function
Definition: Catalysis of the reaction: alpha-maltotetraose + phosphate = alpha-D-glucose 1-phosphate + alpha-maltotriose.
arabinan metabolic process (GO:0031221)
Namespace: biological_process
Definition: The chemical reactions and pathways involving arabinan, a polysaccharide composed of arabinose residues.
Synonyms: arabinan metabolism
arabinan catabolic process (GO:0031222)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of arabinan, a polysaccharide composed of arabinose residues.
Synonyms: arabinan breakdown; arabinan catabolism; arabinan degradation
auditory behavior (GO:0031223)
Namespace: biological_process
Definition: The behavior of an organism in response to a sound.
Synonyms: auditory behaviour; behavioral response to sound; behavioural response to sound
obsolete intrinsic component of membrane (GO:0031224)
Namespace: cellular_component
Definition: OBSOLETE. The component of a membrane consisting of the gene products having some covalently attached portion, for example part of a peptide sequence or some other covalently attached group such as a GPI anchor, which spans or is embedded in one or both leaflets of the membrane.
Synonyms: intrinsic to membrane
Comment: This term was obsoleted because it represents protein topology, not a cellular component.
obsolete intrinsic component of plasma membrane (GO:0031226)
Namespace: cellular_component
Definition: OBSOLETE. The component of the plasma membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.
Synonyms: intrinsic to plasma membrane
Comment: This term was obsoleted because it represents protein topology, not a cellular component.
obsolete intrinsic component of endoplasmic reticulum membrane (GO:0031227)
Namespace: cellular_component
Definition: OBSOLETE. The component of the endoplasmic reticulum membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.
Synonyms: intrinsic to endoplasmic reticulum membrane
Comment: This term was obsoleted because it represents protein topology, not a cellular component.
obsolete intrinsic component of Golgi membrane (GO:0031228)
Namespace: cellular_component
Definition: OBSOLETE. The component of the Golgi membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.
Synonyms: intrinsic to Golgi membrane
Comment: This term was obsoleted because it represents protein topology, not a cellular component.