LiteFold/GO huggingface dataset:
pelvic fin morphogenesis (GO:0035139)
Namespace: biological_process
Definition: The process in which the anatomical structures of the pelvic fin are generated and organized. Pelvic fins are bilaterally paired fins mounted in a ventral-lateral position on most fish. These fins are used primarily for lateral mobility and propulsion.
medial fin morphogenesis (GO:0035141)
Namespace: biological_process
Definition: The process in which the anatomical structures of the medial fin are generated and organized. A medial fin is an unpaired fin of fish, usually located dorsomedially or ventromedially and primarily used for stability while swimming.
Synonyms: median fin morphogenesis; unpaired fin morphogenesis
dorsal fin morphogenesis (GO:0035142)
Namespace: biological_process
Definition: The process in which the anatomical structures of the dorsal fin are generated and organized. A dorsal fin is an unpaired medial fin on the dorsal aspect of fish that provides lateral stability while swimming. Generally fish have one or two dorsal fins.
caudal fin morphogenesis (GO:0035143)
Namespace: biological_process
Definition: The process in which the anatomical structures of the caudal fin are generated and organized. A caudal fin is an unpaired medial fin mounted at the caudal end of the fish, and is the main fin used for propulsion.
anal fin morphogenesis (GO:0035144)
Namespace: biological_process
Definition: The process in which the anatomical structures of the anal fin are generated and organized. An anal fin is an unpaired medial fin on the ventral aspect near the caudal end of a fish, which provides lateral stability while swimming.
exon-exon junction complex (GO:0035145)
Namespace: cellular_component
Definition: A multi-subunit complex deposited by the spliceosome upstream of messenger RNA exon-exon junctions. The exon-exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay.
Synonyms: EJC; exon junction complex
tube fusion (GO:0035146)
Namespace: biological_process
Definition: The joining of specific branches of a tubular system to form a continuous network.
branch fusion, open tracheal system (GO:0035147)
Namespace: biological_process
Definition: Fusing of specific tracheal branches in an open tracheal system to branches from neighboring hemisegments to form a continuous tracheal network. Branch fusion is mediated by individual cells at the tip of each branch, which contact a similar cell and undergo a coordinated series of morphogenetic events that create a bicellular fusion joint.
Synonyms: tracheal branch fusion
tube formation (GO:0035148)
Namespace: biological_process
Definition: Creation of the central hole of a tube in an anatomical structure through which gases and/or liquids flow.
Synonyms: lumen formation in an anatomical structure; tube lumen formation
lumen formation, open tracheal system (GO:0035149)
Namespace: biological_process
Definition: Creation of the central hole of a tube in an open tracheal system through which gases flow.
Synonyms: tracheal lumen formation
regulation of tube size (GO:0035150)
Namespace: biological_process
Definition: Ensuring that a tube is of the correct length and diameter. Tube size must be maintained not only during tube formation, but also throughout development and in some physiological processes.
regulation of tube size, open tracheal system (GO:0035151)
Namespace: biological_process
Definition: Ensuring that an epithelial tube in an open tracheal system is of the correct length and diameter. Tracheal tubes undergo highly regulated tube-size increases during development, expanding up to 40 times their initial size by the end of larval life. Tube size appears to be controlled by regulation of apical membrane expansion and secretion, rather than by changes in cell number, size or shape.
Synonyms: regulation of tracheal tube size
regulation of tube architecture, open tracheal system (GO:0035152)
Namespace: biological_process
Definition: Ensuring that tracheal cells form and maintain tubular structures with the correct size and shape for their position in the network. This is essential for efficient flow of gases through the tracheal network.
Synonyms: regulation of tracheal tube architecture
epithelial cell type specification, open tracheal system (GO:0035153)
Namespace: biological_process
Definition: Allocation of epithelial cells within each migrating branch in an open tracheal system to distinct tracheal cell fates. During the migration phase each branch forms a well-defined number of cell types (including fusion cells, terminal cells and branch cells) at precise positions.
Synonyms: tracheal cell type specification; tracheal epithelial cell type specification
terminal cell fate specification, open tracheal system (GO:0035154)
Namespace: biological_process
Definition: The process in which a cell in an open tracheal system becomes capable of differentiating autonomously into a terminal cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed. Terminal cells send long and bifurcated hollow branches toward target tissues to allow oxygen exchange.
Synonyms: terminal cell fate specification
negative regulation of terminal cell fate specification, open tracheal system (GO:0035155)
Namespace: biological_process
Definition: Any process that restricts, stops or prevents a cell from adopting a terminal cell fate in an open tracheal system. Once the terminal and fusion fates have been correctly induced, inhibitory feedback loops prevent the remaining branch cells from assuming similar fates.
Synonyms: down regulation of terminal cell fate specification; down-regulation of terminal cell fate specification; downregulation of terminal cell fate specification; inhibition of terminal cell fate specification; negative regulation of terminal cell fate specification
fusion cell fate specification (GO:0035156)
Namespace: biological_process
Definition: The process in which a cell becomes capable of differentiating autonomously into a fusion cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed. Fusion cells allow the interconnection of adjacent tracheal metameres during tracheal tube fusion.
negative regulation of fusion cell fate specification (GO:0035157)
Namespace: biological_process
Definition: Any process that restricts, stops or prevents a cell from adopting a fusion cell fate. Once the terminal and fusion fates have been correctly induced, inhibitory feedback loops prevent the remaining branch cells from assuming similar fates.
Synonyms: down regulation of fusion cell fate specification; down-regulation of fusion cell fate specification; downregulation of fusion cell fate specification; inhibition of fusion cell fate specification
regulation of tube diameter, open tracheal system (GO:0035158)
Namespace: biological_process
Definition: Ensuring that a tube in an open tracheal system is of the correct diameter. When primary branches form their lumens are small (less than 2 micrometers) in caliber and must undergo regulated expansion during larval life to reach their mature size.
Synonyms: regulation of tracheal tube diameter; tracheal tube dilation; tracheal tube expansion
regulation of tube length, open tracheal system (GO:0035159)
Namespace: biological_process
Definition: Ensuring that a tube in an open tracheal system is of the correct length.
Synonyms: regulation of tracheal tube length; tracheal tube elongation
imaginal disc lineage restriction (GO:0035161)
Namespace: biological_process
Definition: Formation and/or maintenance of a lineage boundary between compartments in an imaginal disc that cells cannot cross, thus separating the populations of cells in each compartment.
embryonic hemopoiesis (GO:0035162)
Namespace: biological_process
Definition: The stages of blood cell formation that take place within the embryo.
Synonyms: embryonic haematopoiesis; embryonic haemopoiesis; embryonic hematopoiesis
embryonic hemocyte differentiation (GO:0035163)
Namespace: biological_process
Definition: The process in which a relatively unspecialized cell derived from the embryonic head mesoderm acquires the specialized features of a mature hemocyte. Hemocytes are blood cells associated with a hemocoel (the cavity containing most of the major organs of the arthropod body) which are involved in defense and clotting of hemolymph, but not involved in transport of oxygen.
Synonyms: embryonic arthropod blood cell differentiation; embryonic hemocyte cell differentiation
embryonic plasmatocyte differentiation (GO:0035164)
Namespace: biological_process
Definition: The process in which an embryonic mesoderm-derived hemocyte precursor cell acquires the specialized features of the phagocytic blood-cell type, the plasmatocyte.
Synonyms: embryonic plasmatocyte cell differentiation
post-embryonic hemopoiesis (GO:0035166)
Namespace: biological_process
Definition: The stages of blood cell formation that take place after completion of embryonic development.
Synonyms: post-embryonic haemopoiesis
larval lymph gland hemopoiesis (GO:0035167)
Namespace: biological_process
Definition: The production of blood cells from the larval lymph gland. The lymph gland consists of three to six bilaterally paired lobes that are attached to the cardioblasts during larval stages, and it degenerates during pupal stages.
Synonyms: larval lymph gland haematopoiesis; larval lymph gland haemopoiesis; larval lymph gland hematopoiesis
larval lymph gland hemocyte differentiation (GO:0035168)
Namespace: biological_process
Definition: The process in which a relatively unspecialized cell derived from the larval lymph gland acquires the specialized features of a mature hemocyte. The lymph gland consists of three to six bilaterally paired lobes that are attached to the cardioblasts during larval stages, and it degenerates during pupal stages. Hemocytes are blood cells associated with a hemocoel (the cavity containing most of the major organs of the arthropod body) which are involved in defense and clotting of hemolymph, but not involved in transport of oxygen. An example of this process is found in Drosophila melanogaster.
Synonyms: larval lymph gland arthropod blood cell differentiation
lymph gland plasmatocyte differentiation (GO:0035169)
Namespace: biological_process
Definition: The process in which a relatively unspecialized larval lymph gland-derived hemocyte precursor cell acquires the specialized features of the phagocytic blood-cell type, the plasmatocyte.
Synonyms: lymph gland plasmatocyte cell differentiation
lymph gland crystal cell differentiation (GO:0035170)
Namespace: biological_process
Definition: The process in which a relatively unspecialized larval lymph gland-derived hemocyte precursor cell acquires the specialized features of a crystal cell. Crystal cells are a class of cells that contain crystalline inclusions and are involved in the melanization of pathogenic material in the hemolymph.
hemocyte proliferation (GO:0035172)
Namespace: biological_process
Definition: The multiplication or reproduction of hemocytes, resulting in the expansion of the cell population. Hemocytes are blood cells associated with a hemocoel (the cavity containing most of the major organs of the arthropod body) which are involved in defense and clotting of hemolymph, but not involved in transport of oxygen.
Synonyms: arthropod blood cell proliferation
histone kinase activity (GO:0035173)
Namespace: molecular_function
Definition: Catalysis of the transfer of a phosphate group to a histone.
obsolete histone serine kinase activity (GO:0035174)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the transfer of a phosphate group to a serine residue of a histone.
Synonyms: histone-serine kinase activity
Comment: This term was obsoleted because it represents an unnecessary grouping class.
histone H3S10 kinase activity (GO:0035175)
Namespace: molecular_function
Definition: Catalysis of the reaction: histone H3-serine (position 10) + ATP = histone H3-phosphoserine (position 10) + ADP. This reaction is the addition of a phosphate group to the serine residue at position 10 of histone H3.
Synonyms: histone kinase activity (H3-S10 specific); histone serine kinase activity (H3-S10 specific); histone-serine kinase activity (H3-S10 specific)
Comment: Comment: Note that the residue position corresponds to the canonical human H3 histone (UniProtKB:P84243); this residue is conserved across all eukaryotes. Residue 1 is the first residue following removal of the initiating Methionine (Met). Note that each histone is encoded by multiple genes, and sequences may vary across different genes within an organism.
social behavior (GO:0035176)
Namespace: biological_process
Definition: Behavior directed towards society, or taking place between members of the same species. Occurs predominantly, or only, in individuals that are part of a group.
Synonyms: cooperative behavior; social behaviour
Comment: Behavior such as predation which involves members of different species is not social. Communication between members of different species is also not social behavior.
larval foraging behavior (GO:0035177)
Namespace: biological_process
Definition: The movement of a larva through a feeding substrate whilst feeding on food.
Synonyms: larval foraging behaviour
turning behavior (GO:0035178)
Namespace: biological_process
Definition: Fine-tuning the spatial position of an organism in response to variability in their environment. For example, reorientation of an organism in the direction of a food source.
Synonyms: turning behaviour
obsolete larval turning behavior (GO:0035179)
Namespace: biological_process
Definition: OBSOLETE. Fine-tuning the spatial position of a larva in response to variability in their environment. For example, reorientation of a larva in the direction of a food source.
Synonyms: larval turning behaviour
Comment: The reason for obsoletion is that this term represent an assay and not a GO process.
larval burrowing behavior (GO:0035181)
Namespace: biological_process
Definition: Digging into the substrate by non-feeding larvae in search for food-free sites suitable for pupation.
Synonyms: larval burrowing behaviour
female germline ring canal outer rim (GO:0035182)
Namespace: cellular_component
Definition: An electron opaque backbone of the insect ovarian ring canal that is a part of or adjacent to the plasma membrane. The outer rim is established as the cleavage furrow is arrested, and contains F-actin, anillin, glycoproteins and at least one a protein with a high content of phosphorylated tyrosine residues.
Synonyms: germline ring canal outer rim; nurse cell ring canal outer rim; ovarian ring canal outer rim
Comment: See also the fly_anatomy.ontology term 'outer nurse cell ring canal rim ; FBbt:00004882'.
female germline ring canal inner rim (GO:0035183)
Namespace: cellular_component
Definition: A proteinaceous actin-rich layer of the insect ovarian ring canal that forms subcortically to the outer rim. The electron dense inner rim accumulates after the final mitotic division of each germline syncytia, and contains actin, a phosphotyrosine protein, and a number of cytoskeletal proteins.
Synonyms: germline ring canal inner rim; nurse cell ring canal inner rim; ovarian ring canal inner rim
Comment: See also the fly_anatomy.ontology term 'inner nurse cell ring canal rim ; FBbt:00004881'.
obsolete histone threonine kinase activity (GO:0035184)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the transfer of a phosphate group to a threonine residue of a histone.
Synonyms: histone-threonine kinase activity
Comment: This term was obsoleted because it represents an unnecessary grouping class.
preblastoderm mitotic cell cycle (GO:0035185)
Namespace: biological_process
Definition: The first nine mitotic division cycles of the insect embryo, during which the dividing nuclei lie deep in the interior of the egg and divide nearly synchronously. This is the first phase of the syncytial period where nuclei divide in a common cytoplasm without cytokinesis.
syncytial blastoderm mitotic cell cycle (GO:0035186)
Namespace: biological_process
Definition: Mitotic division cycles 10 to 13 of the insect embryo. This is the second phase of the syncytial period where nuclei divide in a common cytoplasm without cytokinesis. The majority of migrating nuclei reach the embryo surface during cycle 10, after which they divide less synchronously than before, and the syncytial blastoderm cycles lengthen progressively.
hatching behavior (GO:0035187)
Namespace: biological_process
Definition: The specific behavior of an organism during the emergence from an egg shell. In Drosophila for example, the larva swings its head reiteratively through a semicircular arc, using its mouth hooks to tear apart the chorion in front of it and thus free itself from within the egg shell.
Synonyms: hatching behaviour
hatching (GO:0035188)
Namespace: biological_process
Definition: The emergence of an immature organism from a protective structure.
Rb-E2F complex (GO:0035189)
Namespace: cellular_component
Definition: A multiprotein complex containing a heterodimeric E2F transcription factor and a Retinoblastoma (Rb) family member. This complex is capable of repressing transcription of E2F-regulated genes in order to regulate cell cycle progression.
Synonyms: retinoblastoma-E2F complex
syncytial nuclear migration (GO:0035190)
Namespace: biological_process
Definition: The directed movement of nuclei within the syncytial embryo of insects. These precise temporal and spatial patterns of nuclear movement are coordinated with mitotic divisions and are required during blastoderm formation to reposition dividing nuclei from the interior of the syncytial embryo to the cortex.
nuclear axial expansion (GO:0035191)
Namespace: biological_process
Definition: The stepwise asymmetric spreading out of nuclei internally along the anterior-posterior axis of the developing insect embryo during mitotic cycles 4 to 6. This movement leads to the distribution of nuclei in a hollow ellipsoid underlying the cortex.
Synonyms: nuclear distribution along anterior-posterior axis; nucleus distribution along anterior-posterior axis
nuclear cortical migration (GO:0035192)
Namespace: biological_process
Definition: The symmetric outward movement of the syncytial nuclei from their positions in the ellipsoid toward the periphery of the embryo, during mitotic cycles 8 and 9. This movement results in the placement of nuclei in a uniform monolayer at the cortex of the developing embryo.
larval central nervous system remodeling (GO:0035193)
Namespace: biological_process
Definition: Reorganization of the pre-existing, functional larval central nervous system into one that can serve the novel behavioral needs of the adult. An example of this process is found in Drosophila melanogaster.
Synonyms: central nervous system metamorphosis; CNS metamorphosis; larval central nervous system remodelling
regulatory ncRNA-mediated post-transcriptional gene silencing (GO:0035194)
Namespace: biological_process
Definition: A posttranscriptional gene silencing pathway in which regulatory RNAs elicit silencing of specific target genes, either by mRNA destabilization or inhibition of translation.
Synonyms: cosuppression; ncRNA-mediated post-transcriptional gene silencing; post-transcriptional gene silencing by RNA; posttranscriptional gene silencing by RNA; PTGS; quelling; RNA interference; RNA-dependent post-transcriptional gene silencing; RNA-mediated post-transcriptional gene silencing; RNA-mediated posttranscriptional gene silencing; RNAi
miRNA-mediated post-transcriptional gene silencing (GO:0035195)
Namespace: biological_process
Definition: A post-transcriptional gene silencing pathway in which regulatory microRNAs (miRNAs) elicit silencing of specific target genes. miRNAs are endogenous 21-24 nucleotide small RNAs processed from stem-loop RNA precursors (pre-miRNAs). Once incorporated into a RNA-induced silencing complex (RISC), miRNAs can downregulate protein production by either of two posttranscriptional mechanisms: endonucleolytic cleavage of the RNA (often mRNA) or mRNA translational repression, usually accompanied by poly-A tail shortening and subsequent degradation of the mRNA. miRNAs are present in all the animals and in plants, whereas siRNAs are present in lower animals and in plants.
Synonyms: gene silencing by microRNA; gene silencing by miRNA; microRNA-mediated gene silencing; miRNA-mediated gene silencing
miRNA processing (GO:0035196)
Namespace: biological_process
Definition: A process leading to the generation of a functional miRNA. Includes the cleavage of stem-loop RNA precursors into microRNAs (miRNAs). miRNAs are a class of small RNAs that primarily silence genes by blocking the translation of mRNA transcripts into protein, or by increasing the degradation of non-protein-coding RNA transcripts.
Synonyms: gene silencing by miRNA, production of miRNAs; microRNA biogenesis; microRNA biosynthesis; microRNA biosynthetic process; microRNA metabolic process; microRNA metabolism; microRNA processing; microRNA-mediated gene silencing, production of microRNAs; miRNA biogenesis; miRNA biosynthetic process; miRNA maturation; miRNA-mediated gene silencing, production of miRNAs; production of microRNAs involved in gene silencing by microRNA; production of miRNAs involved in gene silencing by miRNA
siRNA binding (GO:0035197)
Namespace: molecular_function
Definition: Binding to a small interfering RNA, a 21-23 nucleotide RNA that is processed from double stranded RNA (dsRNA) by an RNAse enzyme.
Synonyms: small interfering RNA binding
miRNA binding (GO:0035198)
Namespace: molecular_function
Definition: Binding to a microRNA, a 21-23 nucleotide RNA that is processed from a stem-loop RNA precursor (pre-miRNA) that is encoded within plant and animal genomes.
Synonyms: microRNA binding
salt aversion (GO:0035199)
Namespace: biological_process
Definition: The specific avoidance actions or reactions of an organism in response to the perception of salt.
Synonyms: behavioral response to salt
leg disc anterior/posterior pattern formation (GO:0035200)
Namespace: biological_process
Definition: The establishment, maintenance and elaboration of the anterior/posterior axis of the leg imaginal disc.
leg disc anterior/posterior lineage restriction (GO:0035201)
Namespace: biological_process
Definition: Formation and/or maintenance of a lineage boundary between anterior and posterior compartments of the leg disc that cells cannot cross, thus separating the populations of cells in each compartment.
tracheal pit formation in open tracheal system (GO:0035202)
Namespace: biological_process
Definition: Formation of the tracheal pits, the first tube-like structures to form in the open tracheal system. Once cells are determined to their tracheal cell fate, the tracheal pits arise by invagination of each ectodermal cluster of tracheal placode cells, between 5 and 7 hours after egg laying. An example of this is found in Drosophila melanogaster.
Synonyms: tracheal placode invagination; tracheal sac formation
regulation of lamellocyte differentiation (GO:0035203)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of lamellocyte differentiation. Lamellocytes differentiate massively in the lymph glands after parasitization and are large flat cells devoted to encapsulation of invaders too large to be phagocytosed by plasmatocytes.
negative regulation of lamellocyte differentiation (GO:0035204)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of lamellocyte differentiation. Lamellocytes differentiate massively in the lymph glands after parasitization and are large flat cells devoted to encapsulation of invaders too large to be phagocytosed by plasmatocytes.
Synonyms: down regulation of lamellocyte differentiation; down-regulation of lamellocyte differentiation; downregulation of lamellocyte differentiation; inhibition of lamellocyte differentiation