LiteFold/GO huggingface dataset:
cellular response to menadione (GO:0036245)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a menadione stimulus. Menadione (also called vitamin K3) is a naphthoquinone having a methyl substituent at the 2-position.
Synonyms: cellular response to vitamin K3
phytochelatin 3 import into vacuole (GO:0036247)
Namespace: biological_process
Definition: The directed movement of phytochelatin 3 (PC3) into the vacuole. Phytochelatin 3 is a glutathione-related peptide composed of (gamma-Glu-Cys)n-Gly where n=3, and where the Glu and Cys residues are linked through a gamma-carboxylamide bond.
Synonyms: PC3 import into vacuole
phytochelatin 4 import into vacuole (GO:0036248)
Namespace: biological_process
Definition: The directed movement of phytochelatin 4 (PC4) into the vacuole. Phytochelatin 4 is a glutathione-related peptide composed of (gamma-Glu-Cys)n-Gly where n=4, and where the Glu and Cys residues are linked through a gamma-carboxylamide bond.
Synonyms: PC4 import into vacuole
cadmium ion import into vacuole (GO:0036249)
Namespace: biological_process
Definition: The directed movement of cadmium ions into the vacuole.
Synonyms: vacuolar cadmium import
peroxisome transport along microtubule (GO:0036250)
Namespace: biological_process
Definition: The directed movement of a peroxisome along a microtubule, mediated by motor proteins.
obsolete positive regulation of transcription from RNA polymerase II promoter in response to salt stress (GO:0036251)
Namespace: biological_process
Definition: OBSOLETE. Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a stimulus indicating the organism is under salt stress. The stress is usually an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete positive regulation of transcription from RNA polymerase II promoter in response to menadione (GO:0036252)
Namespace: biological_process
Definition: OBSOLETE. Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a menadione stimulus. Menadione (also called vitamin K3) is a naphthoquinone having a methyl substituent at the 2-position.
Synonyms: positive regulation of transcription from RNA polymerase II promoter in response to menadione stress
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete response to amiloride (GO:0036253)
Namespace: biological_process
Definition: OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amiloride stimulus.
Comment: This term is out of scope for GO.
obsolete cellular response to amiloride (GO:0036254)
Namespace: biological_process
Definition: OBSOLETE. Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amiloride stimulus.
Comment: This term is out of scope for GO.
response to methylamine (GO:0036255)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a methylamine stimulus.
cellular response to methylamine (GO:0036256)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a methylamine stimulus.
multivesicular body organization (GO:0036257)
Namespace: biological_process
Definition: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a multivesicular body. A multivesicular body is a type of late endosome in which regions of the limiting endosomal membrane invaginate to form internal vesicles; membrane proteins that enter the internal vesicles are sequestered from the cytoplasm.
Synonyms: MVB organization
multivesicular body assembly (GO:0036258)
Namespace: biological_process
Definition: The aggregation, arrangement and bonding together of a set of components to form a multivesicular body, a type of late endosome in which regions of the limiting endosomal membrane invaginate to form internal vesicles; membrane proteins that enter the internal vesicles are sequestered from the cytoplasm.
Synonyms: multivesicular body biogenesis; MVB biogenesis; MVB formation
aerobic raffinose catabolic process (GO:0036259)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of raffinose that occur in the presence of oxygen.
Synonyms: aerobic raffinose breakdown; aerobic raffinose catabolism; aerobic raffinose degradation
RNA capping (GO:0036260)
Namespace: biological_process
Definition: The sequence of enzymatic reactions by which a cap structure is added to the 5' end of nascent RNA polymerase transcripts. Examples of RNA capping include 7-methyl-G caps found on all RNA polymerase II transcripts and nucleotide-containing cofactor caps, such as NAD(H) or FAD, found on bacterial trancripts.
7-methylguanosine cap hypermethylation (GO:0036261)
Namespace: biological_process
Definition: Hypermethylation of the 7-(mono)methylguanosine (m(7)G) cap structure at the 2' position of the guanosine residue to convert a mono-methylated cap to a 2,2,7-trimethylguanosine cap structure. This type of cap modification occurs on small nuclear RNAs (snRNAs) and small nucleolar RNAs (snoRNAs) and is dependent on prior guanine-N7 methylation.
Synonyms: 2,2,7-trimethylguanosine cap formation; conversion of m(7)G to m(3)G; hypermethylation of snoRNA cap; hypermethylation of snRNA cap; m(7)G cap hypermethylation; snoRNA capping; snRNA capping; TMG cap formation
granulysin production (GO:0036262)
Namespace: biological_process
Definition: The appearance of granulysin due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms.
RNA (guanine-N7)-methylation (GO:0036265)
Namespace: biological_process
Definition: The addition of a methyl group to the N7 atom in the base portion of a guanine nucleotide residue in an RNA molecule.
Cdc48p-Npl4p-Vms1p AAA ATPase complex (GO:0036266)
Namespace: cellular_component
Definition: A multiprotein ATPase complex involved in the release of polyubiquitinated proteins, including those damaged by oxidative stress, from the outer mitochondria membrane into the cytoplasm where they are presented to the proteasome for proteolysis, a process also referred to as mitochondria-associated degradation (MAD). In budding yeast, this complex includes Cdc48p, Npl4p and Vms1p.
Synonyms: Cdc48p-Npl4p-Vms1p complex; Vms1-Cdc48-Npl4 complex; Vms1p-Cdc48p-Npl4p complex
invasive filamentous growth (GO:0036267)
Namespace: biological_process
Definition: The growth of colonies in filamentous chains of cells into a substrate.
Synonyms: invasive growth
swimming (GO:0036268)
Namespace: biological_process
Definition: Self-propelled movement of an organism from one location to another through water, often by means of active fin movement.
Comment: For behavioral aspects of swimming, consider instead annotating to 'swimming behavior ; GO:0036269'.
swimming behavior (GO:0036269)
Namespace: biological_process
Definition: The response to external or internal stimuli that results in the locomotory process of swimming. Swimming is the self-propelled movement of an organism through the water.
Synonyms: swimming behaviour
response to diuretic (GO:0036270)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a diuretic stimulus. A diuretic is an agent that promotes the excretion of urine through its effects on kidney function.
Comment: Note that this term is in the subset of terms that should not be used for direct manual annotation of gene products. It was created to be used for cross-referencing by other ontologies. Direct annotations to this term may be amended during annotation QC.
response to methylphenidate (GO:0036271)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a methylphenidate stimulus.
Synonyms: response to MPD; response to MPH; response to ritalin
Comment: Note that this term is in the subset of terms that should not be used for direct manual annotation of gene products. It was created to be used for cross-referencing by other ontologies. Direct annotations to this term may be amended during annotation QC.
response to gemcitabine (GO:0036272)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gemcitabine stimulus. Gemcitabine is a 2'-deoxycytidine having geminal fluoro substituents in the 2'-position, and is used as a drug in the treatment of various carcinomas.
Synonyms: response to 2',2'-difluorodeoxycytidine; response to 2'-deoxy-2',2'-difluorocytidine
Comment: Note that this term is in the subset of terms that should not be used for direct manual annotation of gene products. It was created to be used for cross-referencing by other ontologies. Direct annotations to this term may be amended during annotation QC.
response to statin (GO:0036273)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a statin stimulus. Statins are organooxygen compounds whose structure is related to compactin (mevastatin) and which may be used as an anticholesteremic drug due its EC:1.1.1.34/EC:1.1.1.88 (hydroxymethylglutaryl-CoA reductase) inhibitory properties.
Synonyms: response to HMG-CoA reductase inhibitor; response to hydroxymethylglutaryl-CoA reductase inhibitor
Comment: Note that this term is in the subset of terms that should not be used for direct manual annotation of gene products. It was created to be used for cross-referencing by other ontologies. Direct annotations to this term may be amended during annotation QC.
response to lapatinib (GO:0036274)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lapatinib stimulus.
Comment: Note that this term is in the subset of terms that should not be used for direct manual annotation of gene products. It was created to be used for cross-referencing by other ontologies. Direct annotations to this term may be amended during annotation QC.
response to 5-fluorouracil (GO:0036275)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a 5-fluorouracil stimulus.
Synonyms: response to 5-fluoropyrimidine-2,4(1H,3H)-dione; response to fluorouracil
Comment: Note that this term is in the subset of terms that should not be used for direct manual annotation of gene products. It was created to be used for cross-referencing by other ontologies. Direct annotations to this term may be amended during annotation QC.
response to antidepressant (GO:0036276)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antidepressant stimulus, a mood-stimulating drug.
Comment: Note that this term is in the subset of terms that should not be used for direct manual annotation of gene products. It was created to be used for cross-referencing by other ontologies. Direct annotations to this term may be amended during annotation QC.
response to anticonvulsant (GO:0036277)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an anticonvulsant stimulus, a drug used to prevent seizures or reduce their severity.
Comment: Note that this term is in the subset of terms that should not be used for direct manual annotation of gene products. It was created to be used for cross-referencing by other ontologies. Direct annotations to this term may be amended during annotation QC.
obsolete positive regulation of transcription from RNA polymerase II promoter in response to nitrogen starvation (GO:0036278)
Namespace: biological_process
Definition: OBSOLETE. Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a deprivation of nitrogen.
Comment: This term was obsoleted because it represents a GO-CAM model.
positive regulation of protein export from nucleus in response to glucose starvation (GO:0036279)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of directed movement of proteins from the nucleus into the cytoplasm in response to deprivation of glucose.
cellular response to L-canavanine (GO:0036280)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a L-canavanine stimulus. L-canavanine is L-homoserine substituted at oxygen with a guanidino (carbamimidamido) group.
obsolete positive regulation of transcription factor import into nucleus in response to oxidative stress (GO:0036283)
Namespace: biological_process
Definition: OBSOLETE. Any process that activates or increases the frequency, rate or extent of the movement of a transcription factor from the cytoplasm to the nucleus under conditions of oxidative stress.
Synonyms: positive regulation of transcription factor import into nucleus in response to hydrogen peroxide
Comment: The reason for obsoletion is that there is no distinct pathway to import transcription factors into the nucleus.
tubulobulbar complex (GO:0036284)
Namespace: cellular_component
Definition: Actin-based structures involved in establishing close contact between Sertoli-Sertoli cells or Sertoli-spermatids in the seminiferous tubules of the testes.
Synonyms: TBC
SAGA complex assembly (GO:0036285)
Namespace: biological_process
Definition: The aggregation, arrangement and bonding together of a set of components to form a SAGA complex, a SAGA-type histone acetyltransferase complex that contains Spt8 (in budding yeast) or a homolog thereof.
Synonyms: SAGA complex formation
eisosome filament (GO:0036286)
Namespace: cellular_component
Definition: A filamentous cortical structure formed, in S. pombe, by the eisosome component Pil1.
Synonyms: linear eisosome
response to iloperidone (GO:0036287)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iloperidone stimulus.
Comment: Note that this term is in the subset of terms that should not be used for direct manual annotation of gene products. It was created to be used for cross-referencing by other ontologies. Direct annotations to this term may be amended during annotation QC.
response to ximelagatran (GO:0036288)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ximelagatran stimulus.
Comment: Note that this term is in the subset of terms that should not be used for direct manual annotation of gene products. It was created to be used for cross-referencing by other ontologies. Direct annotations to this term may be amended during annotation QC.
peptidyl-serine autophosphorylation (GO:0036289)
Namespace: biological_process
Definition: The phosphorylation by a protein of one or more of its own serine amino acid residues, or a serine residue on an identical protein.
Synonyms: serine autophosphorylation
protein trans-autophosphorylation (GO:0036290)
Namespace: biological_process
Definition: The phosphorylation by a protein of a residue on an identical protein. For example, phosphorylation by the other kinase within a homodimer.
Synonyms: trans-autophosphorylation
obsolete protein cis-autophosphorylation (GO:0036291)
Namespace: biological_process
Definition: OBSOLETE. The phosphorylation by a protein of one or more of its own amino acid residues.
Synonyms: cis-autophosphorylation
Comment: This term was obsoleted because it represents a molecular function.
obsolete DNA rewinding (GO:0036292)
Namespace: biological_process
Definition: OBSOLETE. The process in which interchain hydrogen bonds between two single-stranded DNA (ssDNA) are reformed to regenerate double-stranded DNA (dsDNA). ssDNA is often bound and stabilized by proteins such as replication protein A (RPA) to form ssDNA bubbles. The bubbles can be rewound by ATP-dependent motors to reform base pairs between strands and thus dsDNA.
Synonyms: DNA annealing; RPA-dependent DNA rewinding; single-stranded DNA bubble rewinding
Comment: The reason for obsoletion is that the term represents a molecular function.
response to decreased oxygen levels (GO:0036293)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting a decline in the level of oxygen.
Synonyms: response to lowered oxygen levels
Comment: This term should be used when a decrease in oxygen levels is not considered a stress response. For a hypoxic stress response, consider instead 'response to hypoxia ; GO:0001666'.
cellular response to increased oxygen levels (GO:0036295)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting an increase in the level of oxygen.
Synonyms: cellular response to raised oxygen levels
Comment: This term should be used when an increase in oxygen levels is not considered a stress response. For a hyperoxic stress response, consider instead 'cellular response to hyperoxia ; GO:0071455'.
response to increased oxygen levels (GO:0036296)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting an increase in the level of oxygen.
Synonyms: response to raised oxygen levels
Comment: This term should be used when an increase in oxygen levels is not considered a stress response. For a hyperoxic stress response, consider instead 'response to hyperoxia ; GO:0055093.
interstrand cross-link repair (GO:0036297)
Namespace: biological_process
Definition: Removal of a DNA interstrand crosslink (a covalent attachment of DNA bases on opposite strands of the DNA) and restoration of the DNA. DNA interstrand crosslinks occur when both strands of duplex DNA are covalently tethered together (e.g. by an exogenous or endogenous agent), thus preventing the strand unwinding necessary for essential DNA functions such as transcription and replication.
Synonyms: ICL repair
recombinational interstrand cross-link repair (GO:0036298)
Namespace: biological_process
Definition: Removal of a DNA interstrand crosslink (a covalent attachment of DNA bases on opposite strands of the DNA) and restoration of the DNA by a mechanism that involves the exchange, reciprocal or nonreciprocal, of genetic material between the broken DNA molecule and a homologous DNA region.
Synonyms: Fanconi pathway; recombination-dependent interstrand cross-link repair
non-recombinational interstrand cross-link repair (GO:0036299)
Namespace: biological_process
Definition: Removal of a DNA interstrand crosslink (a covalent attachment of DNA bases on opposite strands of the DNA) and restoration of the DNA by a mechanism that does not involve homologous DNA recombination.
Synonyms: recombination-independent ICL repair; recombination-independent interstrand cross-link repair
B cell receptor internalization (GO:0036300)
Namespace: biological_process
Definition: A receptor-mediated endocytosis process that results in the movement of a B cell receptor from the plasma membrane to the inside of the cell.
Synonyms: B cell receptor uptake of antigen; BCR endocytosis; BCR receptor internalization
macrophage colony-stimulating factor production (GO:0036301)
Namespace: biological_process
Definition: The appearance of macrophage colony-stimulating factor due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.
Synonyms: M-CSF production
atrioventricular canal development (GO:0036302)
Namespace: biological_process
Definition: The progression of the atrioventricular canal over time, from its formation to the mature structure. The atrioventricular canal is the part of the heart connecting the atrium to the cardiac ventricle.
lymph vessel morphogenesis (GO:0036303)
Namespace: biological_process
Definition: The process in which the anatomical structures of lymph vessels are generated and organized. The lymph vessel is the vasculature carrying lymph.
umbilical cord morphogenesis (GO:0036304)
Namespace: biological_process
Definition: The process in which the anatomical structures of the umbilical cord are generated and organized. The umbilical cord is an organ or embryonic origin consisting of the 2 umbilical arteries and the one umbilical vein. The umbilical cord connects the cardiovascular system of the fetus to the mother via the placenta.
ameloblast differentiation (GO:0036305)
Namespace: biological_process
Definition: The process in which a relatively unspecialized cell acquires specialized features of an ameloblast, a cylindrical epithelial cell in the innermost layer of the enamel organ.
embryonic heart tube elongation (GO:0036306)
Namespace: biological_process
Definition: The developmental growth that results in the increase in length of the embryonic heart tube. The embryonic heart tube is an epithelial tube that will give rise to the mature heart.
23S rRNA (adenine(2030)-N(6))-methyltransferase activity (GO:0036307)
Namespace: molecular_function
Definition: Catalysis of the reaction: S-adenosyl-L-methionine + adenine(2030) in 23S rRNA = S-adenosyl-L-homocysteine + rRNA containing N(6)-methyladenine(2030) in 23S rRNA.
16S rRNA (guanine(1516)-N(2))-methyltransferase activity (GO:0036308)
Namespace: molecular_function
Definition: Catalysis of the reaction: guanosine(1516) in 16S rRNA + S-adenosyl-L-methionine = N(2)-methylguanosine(1516) in 16S rRNA + S-adenosyl-L-homocysteine + H+.
protein localization to M-band (GO:0036309)
Namespace: biological_process
Definition: Any process in which a protein is transported to, and/or maintained in, the M band. The M band is the midline of aligned thick filaments in a sarcomere.
Synonyms: cellular protein localization to M-band; protein localization to M disc; protein localization to M line; protein localization to mesophragma