LiteFold/GO huggingface dataset:
CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process (GO:0033468)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of CMP-keto-3-deoxy-D-manno-octulosonic acid, a substance composed of the acidic sugar 3-deoxy-D-manno-octulosonic acid in glycosidic linkage with cytidine monophosphate.
Synonyms: CMP-KDO biosynthesis; CMP-KDO biosynthetic process; CMP-keto-3-deoxy-D-manno-octulosonic acid anabolism; CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthesis; CMP-keto-3-deoxy-D-manno-octulosonic acid formation; CMP-keto-3-deoxy-D-manno-octulosonic acid synthesis; CMP-ketodeoxyoctanoate biosynthetic process
obsolete gibberellin 12 metabolic process (GO:0033469)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving gibberellin 12, (1R,2S,3S,4R,8S,9S,12R)-4,8-dimethyl-13-methylidenetetracyclo[10.2.1.01,9.03,8]pentadecane-2,4-dicarboxylic acid 1meta,4a-dimethyl-8-methylidene-4aalpha,4bbeta-gibbane-1alpha,10beta-dicarboxylic acid.
Synonyms: GA12 metabolic process; gibberellin 12 metabolism; gibberellin A12 metabolic process
Comment: This term was obsoleted because it is an unnecessary grouping term.
gibberellin 12 biosynthetic process (GO:0033470)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of gibberellin 12, (1R,2S,3S,4R,8S,9S,12R)-4,8-dimethyl-13-methylidenetetracyclo[10.2.1.01,9.03,8]pentadecane-2,4-dicarboxylic acid 1meta,4a-dimethyl-8-methylidene-4aalpha,4bbeta-gibbane-1alpha,10beta-dicarboxylic acid.
Synonyms: GA12 biosynthetic process; gibberellin 12 anabolism; gibberellin 12 biosynthesis; gibberellin 12 formation; gibberellin 12 synthesis; gibberellin A12 biosynthetic process
GDP-L-galactose biosynthetic process (GO:0033472)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of GDP-L-galactose, a substance composed of L-galactose in glycosidic linkage with guanosine diphosphate.
Synonyms: GDP-L-galactose anabolism; GDP-L-galactose biosynthesis; GDP-L-galactose formation; GDP-L-galactose synthesis
indoleacetic acid conjugate metabolic process (GO:0033473)
Namespace: biological_process
Definition: The chemical reactions and pathways involving any indole-3-acetic acid conjugate, a form of indoleacetic acid covalently bound to another molecule.
Synonyms: IAA conjugate metabolic process; indole acetic acid conjugate metabolic process; indole acetic acid conjugate metabolism; indoleacetic acid conjugate metabolism
indoleacetic acid amide conjugate biosynthetic process (GO:0033475)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of an indole-3-acetic acid amide conjugate, a form of indoleacetic acid covalently bound to an amino acid or polypeptide through an amide bond.
Synonyms: IAA amide conjugate biosynthetic process; indole acetic acid amide conjugate biosynthesis; indole acetic acid amide conjugate biosynthetic process; indoleacetic acid amide conjugate anabolism; indoleacetic acid amide conjugate biosynthesis; indoleacetic acid amide conjugate formation; indoleacetic acid amide conjugate synthesis
indoleacetic acid ester conjugate biosynthetic process (GO:0033476)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of an indole-3-acetic acid amide conjugate, a form of indoleacetic acid covalently bound to an a sugar or polyol through an ester bond.
Synonyms: IAA ester conjugate biosynthetic process; indole acetic acid ester conjugate biosynthesis; indole acetic acid ester conjugate biosynthetic process; indoleacetic acid ester conjugate anabolism; indoleacetic acid ester conjugate biosynthesis; indoleacetic acid ester conjugate formation; indoleacetic acid ester conjugate synthesis
S-methylmethionine metabolic process (GO:0033477)
Namespace: biological_process
Definition: The chemical reactions and pathways involving S-methyl-methionine (SMM). SMM can be converted to methionine by donating a methyl group to homocysteine, and concurrent operation of this reaction and that mediated by MMT sets up the SMM cycle.
Synonyms: S-methylmethionine metabolism
obsolete UDP-rhamnose metabolic process (GO:0033478)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving UDP-L-rhamnose, a substance composed of rhamnose in glycosidic linkage with uridine diphosphate.
Synonyms: UDP-rhamnose metabolism
Comment: This term was obsoleted because it is an unnecessary grouping term.
obsolete UDP-D-galacturonate metabolic process (GO:0033479)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving UDP-D-galacturonate, a substance composed of galacturonic acid in glycosidic linkage with uridine diphosphate.
Synonyms: UDP-D-galacturonate metabolism
Comment: This term was obsoleted because it is an unnecessary grouping term.
UDP-D-galacturonate biosynthetic process (GO:0033480)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of UDP-D-galacturonate, a substance composed of galacturonic acid in glycosidic linkage with uridine diphosphate.
Synonyms: UDP-D-galacturonate anabolism; UDP-D-galacturonate biosynthesis; UDP-D-galacturonate formation; UDP-D-galacturonate synthesis
galacturonate biosynthetic process (GO:0033481)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of galacturonate, the anion of galacturonic acid.
Synonyms: galacturonate anabolism; galacturonate biosynthesis; galacturonate formation; galacturonate synthesis
D-galacturonate biosynthetic process (GO:0033482)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of D-galacturonate, the D-enantiomer of galacturonate, the anion of galacturonic acid.
Synonyms: D-galacturonate anabolism; D-galacturonate biosynthesis; D-galacturonate formation; D-galacturonate synthesis
obsolete gas homeostasis (GO:0033483)
Namespace: biological_process
Definition: OBSOLETE. A homeostatic process involved in the maintenance of an internal steady state of a gas within an organism or cell.
Comment: This term was obsoleted because it is an unnecessary grouping class.
intracellular nitric oxide homeostasis (GO:0033484)
Namespace: biological_process
Definition: A homeostatic process involved in the maintenance of a steady state level of nitric oxide within a cell.
Synonyms: cellular nitric oxide homeostasis; nitric oxide homeostasis; NO homeostasis
cyanidin 3-O-glucoside biosynthetic process (GO:0033485)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of cyanidin 3-O-glucoside, a basic anthocyanin responsible for red to magenta coloration of flowers and fruits.
Synonyms: cyanidin 3-O-glucoside anabolism; cyanidin 3-O-glucoside biosynthesis; cyanidin 3-O-glucoside formation; cyanidin 3-O-glucoside synthesis
delphinidin 3-O-glucoside biosynthetic process (GO:0033486)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of delphinidin 3-O-glucoside, a basic, water-soluble anthocyanin responsible for blue coloration of flowers and fruits.
Synonyms: delphinidin 3-O-glucoside anabolism; delphinidin 3-O-glucoside biosynthesis; delphinidin 3-O-glucoside formation; delphinidin 3-O-glucoside synthesis
pelargonidin 3-O-glucoside biosynthetic process (GO:0033487)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of pelargonidin 3-O-glucoside, a basic anthocyanin responsible for red to magenta coloration of flowers and fruits.
Synonyms: pelargonidin 3-O-glucoside anabolism; pelargonidin 3-O-glucoside biosynthesis; pelargonidin 3-O-glucoside formation; pelargonidin 3-O-glucoside synthesis
cholesterol biosynthetic process via 24,25-dihydrolanosterol (GO:0033488)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, via the intermediate 24,25-dihydrolanosterol.
Synonyms: cholesterol anabolism via 24,25-dihydrolanosterol; cholesterol biosynthesis via 24,25-dihydrolanosterol; cholesterol formation via 24,25-dihydrolanosterol; cholesterol synthesis via 24,25-dihydrolanosterol
cholesterol biosynthetic process via desmosterol (GO:0033489)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, via the intermediate desmosterol.
Synonyms: cholesterol anabolism via desmosterol; cholesterol biosynthesis via desmosterol; cholesterol formation via desmosterol; cholesterol synthesis via desmosterol
cholesterol biosynthetic process via lathosterol (GO:0033490)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, via the intermediate lathosterol.
Synonyms: cholesterol anabolism via lathosterol; cholesterol biosynthesis via lathosterol; cholesterol formation via lathosterol; cholesterol synthesis via lathosterol
coniferin metabolic process (GO:0033491)
Namespace: biological_process
Definition: The chemical reactions and pathways involving coniferin, 4-(3-hydroxyprop-1-en-1-yl)-2-methoxyphenyl beta-D-glucopyranoside.
Synonyms: coniferin metabolism
obsolete esculetin metabolic process (GO:0033492)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving esculetin, 6,7-dihydroxycoumarin.
Synonyms: esculetin metabolism
Comment: This term was obsoleted because it is an unnecessary grouping term.
esculetin biosynthetic process (GO:0033493)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of esculetin, 6,7-dihydroxycoumarin.
Synonyms: esculetin anabolism; esculetin biosynthesis; esculetin formation; esculetin synthesis
ferulate metabolic process (GO:0033494)
Namespace: biological_process
Definition: The chemical reactions and pathways involving ferulate, (2E)-3-(4-hydroxy-3-methoxyphenyl)prop-2-enoate.
Synonyms: ferulate metabolism
ferulate biosynthetic process (GO:0033495)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of ferulate, (2E)-3-(4-hydroxy-3-methoxyphenyl)prop-2-enoate.
Synonyms: ferulate anabolism; ferulate biosynthesis; ferulate formation; ferulate synthesis
obsolete sinapate metabolic process (GO:0033496)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving sinapate, (2E)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoate.
Synonyms: sinapate metabolism
Comment: This term was obsoleted because it is an unnecessary grouping term.
sinapate biosynthetic process (GO:0033497)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of sinapate, (2E)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoate.
Synonyms: sinapate anabolism; sinapate biosynthesis; sinapate formation; sinapate synthesis
galactose catabolic process via D-galactonate (GO:0033498)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of galactose, via the intermediate D-galactonate.
Synonyms: galactose breakdown via D-galactonate; galactose catabolism via D-galactonate; galactose degradation via D-galactonate
galactose catabolic process via UDP-galactose, Leloir pathway (GO:0033499)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of galactose, via the intermediate UDP-galactose.
Synonyms: galactose breakdown via UDP-galactose; galactose catabolism via UDP-galactose; galactose degradation via UDP-galactose; Leloir Pathway
carbohydrate homeostasis (GO:0033500)
Namespace: biological_process
Definition: A homeostatic process involved in the maintenance of an internal steady state of a carbohydrate within an organism or cell.
obsolete galactose homeostasis (GO:0033501)
Namespace: biological_process
Definition: OBSOLETE. A homeostatic process involved in the maintenance of an internal steady state of galactose within an organism or cell.
Comment: This term was obsoleted because it does not specify whether it represent an intracellular or an organism-level process.
obsolete intracellular galactose homeostasis (GO:0033502)
Namespace: biological_process
Definition: OBSOLETE. A homeostatic process involved in the maintenance of a steady state level of galactose within a cell.
Synonyms: cell galactose homeostasis; cellular galactose homeostasis
Comment: This term was obsoleted because there is no evidence that this process exist.
HULC complex (GO:0033503)
Namespace: cellular_component
Definition: A ubiquitin ligase complex that contains two RING finger proteins, which have ubiquitin ligase activity, in addition to a protein with ubiquitin-conjugating enzyme activity; catalyzes the ubiquitination of histone H2B at lysine 119 (or the equivalent residue). In Schizosaccharomyces the subunits are Rhp6, Shf1, Brl2/Rfp1 and Brl1/Rfp2.
floor plate development (GO:0033504)
Namespace: biological_process
Definition: The progression of the floor plate over time from its initial formation until its mature state.
floor plate morphogenesis (GO:0033505)
Namespace: biological_process
Definition: The process in which the anatomical structure of the floor plate is generated and organized.
glucosinolate biosynthetic process from homomethionine (GO:0033506)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of glucosinolates from other compounds including homomethionine.
Synonyms: glucosinolate anabolism from homomethionine; glucosinolate biosynthesis from homomethionine; glucosinolate formation from homomethionine; glucosinolate synthesis from homomethionine
glucosinolate biosynthetic process from phenylalanine (GO:0033507)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of glucosinolates from other compounds including phenylalanine.
Synonyms: glucosinolate anabolism from phenylalanine; glucosinolate biosynthesis from phenylalanine; glucosinolate formation from phenylalanine; glucosinolate synthesis from phenylalanine
L-glutamate fermentation (GO:0033508)
Namespace: biological_process
Definition: The anaerobic chemical reactions and pathways resulting in the breakdown of L-glutamate, yielding energy in the form of ATP.
Synonyms: glutamate breakdown to butyrate; glutamate degradation to butyrate; L-glutamate catabolic process to pyruvate; L-glutamate fermentation to propionate; L-glutamate fermentation to pyruvate; L-glutamate fermentation via 2-hydroxyglutarate; L-glutamate fermentation via L-citramalate
obsolete L-glutamate fermentation to propionate (GO:0033509)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the breakdown of L-glutamate into other compounds, including propionate.
Synonyms: glutamate breakdown to propionate; glutamate degradation to propionate; L-glutamate catabolic process to propionate
Comment: This term was obsoleted because it represents a specific instance of a pathway that should be captured as a GO-CAM model.
obsolete luteolin metabolic process (GO:0033510)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving luteolin, 2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-4H-chromen-4-one.
Synonyms: luteolin metabolism
Comment: This term was obsoleted because it is an unnecessary grouping term.
luteolin biosynthetic process (GO:0033511)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of luteolin, 2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-4H-chromen-4-one.
Synonyms: luteolin anabolism; luteolin biosynthesis; luteolin formation; luteolin synthesis
obsolete L-lysine catabolic process to acetyl-CoA via L-saccharopine (GO:0033512)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the breakdown of L-lysine into other compounds, including acetyl-CoA, via the intermediate L-saccharopine.
Synonyms: L-lysine breakdown to acetyl-CoA via saccharopine; L-lysine degradation to acetyl-CoA via saccharopine
Comment: This term was obsoleted because it represents a specific instance of a pathway that should be captured as a GO-CAM model.
obsolete L-lysine catabolic process to acetyl-CoA via 5-aminopentanamide (GO:0033513)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the breakdown of L-lysine into other compounds, including acetyl-CoA, via the intermediate 5-aminopentanamide.
Synonyms: L-lysine breakdown to acetyl-CoA via 5-aminopentanamide; L-lysine degradation to acetyl-CoA via 5-aminopentanamide
Comment: This term was obsoleted because it represents a specific instance of a pathway that should be captured as a GO-CAM model.
obsolete L-lysine catabolic process to acetyl-CoA via L-pipecolate (GO:0033514)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the breakdown of L-lysine into other compounds, including acetyl-CoA, via the intermediate L-pipecolate.
Synonyms: L-lysine breakdown to acetyl-CoA via L-pipecolate; L-lysine degradation to acetyl-CoA via L-pipecolate
Comment: This term was obsoleted because it represents a specific instance of a pathway that should be captured as a GO-CAM model.
obsolete L-lysine catabolic process using lysine 6-aminotransferase (GO:0033515)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the breakdown of L-lysine into other compounds, including alpha-aminoadipate; in this pathway, L-lysine is converted to 2-aminoadipate-6-semialdehyde by lysine 6-aminotransferase.
Synonyms: L-lysine breakdown using lysine 6-aminotransferase; L-lysine degradation using lysine 6-aminotransferase
Comment: This term was obsoleted because it represents a specific instance of a pathway that should be captured as a GO-CAM model.
obsolete myo-inositol hexakisphosphate metabolic process (GO:0033517)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving phytic acid, myo-inositol hexakisphosphate, a regulator of intracellular signaling, a highly abundant animal anti-nutrient and a phosphate and mineral storage compound in plant seeds.
Synonyms: myo-inositol hexakisphosphate metabolism; phytate metabolic process; phytate metabolism
Comment: This term was obsoleted because it is an unnecessary grouping term.
obsolete myo-inositol hexakisphosphate dephosphorylation (GO:0033518)
Namespace: biological_process
Definition: OBSOLETE. The process of removing one or more phosphate group from myo-inositol hexakisphosphate.
Synonyms: phytate dephosphorylation
Comment: This term was obsoleted because it represents a molecular function.
obsolete phytyl diphosphate metabolic process (GO:0033519)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving phytyl diphosphate, (2E)-3,7,11,15-tetramethylhexadec-2-en-1-yl trihydrogen diphosphate.
Synonyms: phytyl diphosphate metabolism
Comment: This term was obsoleted because it is an unnecessary grouping term.
phytol biosynthetic process (GO:0033520)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of phytol, (2E,7R,11R)-3,7,11,15-tetramethylhexadec-2-en-1-ol.
Synonyms: phytol anabolism; phytol biosynthesis; phytol formation; phytol synthesis
phytyl diphosphate biosynthetic process (GO:0033521)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of phytyl diphosphate, (2E)-3,7,11,15-tetramethylhexadec-2-en-1-yl trihydrogen diphosphate.
Synonyms: phytyl diphosphate anabolism; phytyl diphosphate biosynthesis; phytyl diphosphate formation; phytyl diphosphate synthesis
obsolete histone H2A ubiquitination (GO:0033522)
Namespace: biological_process
Definition: OBSOLETE. The modification of histone H2A by addition of one or more ubiquitin groups.
Comment: This term was obsoleted because it represents a molecular function.
obsolete histone H2B ubiquitination (GO:0033523)
Namespace: biological_process
Definition: OBSOLETE. The modification of histone H2B by addition of ubiquitin groups.
Comment: This term was obsoleted because it represents a molecular function.
obsolete sinapate ester metabolic process (GO:0033524)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving ester derivatives of sinapate, (2E)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoate.
Synonyms: sinapate ester metabolism
Comment: This term was obsoleted because it is an unnecessary grouping term.
sinapate ester biosynthetic process (GO:0033525)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of ester derivates of sinapate, (2E)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoate.
Synonyms: sinapate ester anabolism; sinapate ester biosynthesis; sinapate ester formation; sinapate ester synthesis
tetrapyrrole biosynthetic process from glutamate (GO:0033526)
Namespace: biological_process
Definition: The chemical reactions and pathways leading to the formation of tetrapyrroles, natural pigments containing four pyrrole rings joined by one-carbon units linking position 2 of one pyrrole ring to position 5 of the next, from other compounds, including L-glutamate.
Synonyms: tetrapyrrole anabolism from glutamate; tetrapyrrole biosynthesis from glutamate; tetrapyrrole formation from glutamate; tetrapyrrole synthesis from glutamate
tetrapyrrole biosynthetic process from glycine and succinyl-CoA (GO:0033527)
Namespace: biological_process
Definition: The chemical reactions and pathways leading to the formation of tetrapyrroles, natural pigments containing four pyrrole rings joined by one-carbon units linking position 2 of one pyrrole ring to position 5 of the next, from other compounds, including glycine and succinyl-CoA.
Synonyms: tetrapyrrole anabolism from glycine and succinyl-CoA; tetrapyrrole biosynthesis from glycine and succinyl-CoA; tetrapyrrole formation from glycine and succinyl-CoA; tetrapyrrole synthesis from glycine and succinyl-CoA
S-methylmethionine cycle (GO:0033528)
Namespace: biological_process
Definition: A cyclic series of interconversions involving S-methyl-L-methionine, S-adenosyl-L-homocysteine, S-adenosyl-L-methionine, L-homocysteine, and L-methionine. Converts the methionine group of adenosylmethionine back to free methionine, and may serve regulate the cellular adenosylmethionine level.
raffinose biosynthetic process (GO:0033529)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of raffinose, the trisaccharide beta-D-fructofuranosyl alpha-D-galactopyranosyl-(1->6)-alpha-D-glucopyranoside.
Synonyms: raffinose anabolism; raffinose biosynthesis; raffinose formation; raffinose synthesis
raffinose metabolic process (GO:0033530)
Namespace: biological_process
Definition: The chemical reactions and pathways involving raffinose, the trisaccharide beta-D-fructofuranosyl alpha-D-galactopyranosyl-(1->6)-alpha-D-glucopyranoside.
Synonyms: raffinose metabolism
stachyose metabolic process (GO:0033531)
Namespace: biological_process
Definition: The chemical reactions and pathways involving stachyose, the tetrasaccharide beta-D-fructofuranosyl alpha-D-galactopyranosyl-(1->6)-alpha-D-galactopyranosyl-(1->6)-alpha-D-glucopyranoside.
Synonyms: stachyose metabolism
stachyose biosynthetic process (GO:0033532)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of stachyose, the tetrasaccharide beta-D-fructofuranosyl alpha-D-galactopyranosyl-(1->6)-alpha-D-galactopyranosyl-(1->6)-alpha-D-glucopyranoside.
Synonyms: stachyose anabolism; stachyose biosynthesis; stachyose formation; stachyose synthesis