LiteFold/GO huggingface dataset:
sensory perception of slow pain (GO:0019235)
Namespace: biological_process
Definition: The series of events required for an organism to receive a slow pain stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process. Slow pain is often subjectively described as an aching or throbbing pain; in humans, the signals from a slow pain stimulus are perceived and relayed along unmyelinated C fibers to the central nervous system, reaching their target in about 1 second. Slow pain is often associated with tissue destruction.
response to pheromone (GO:0019236)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pheromone stimulus.
Synonyms: pheromone response
centromeric DNA binding (GO:0019237)
Namespace: molecular_function
Definition: Binding to a centromere, a region of chromosome where the spindle fibers attach during mitosis and meiosis.
Synonyms: centromere binding
cyclohydrolase activity (GO:0019238)
Namespace: molecular_function
Definition: Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in a cyclic amidine, a compound of the form R-C(=NH)-NH2, in a reaction that involves the opening of a ring.
citrulline biosynthetic process (GO:0019240)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of citrulline, N5-carbamoyl-L-ornithine, an alpha amino acid not found in proteins.
Synonyms: citrulline anabolism; citrulline biosynthesis; citrulline formation; citrulline synthesis
L-citrulline catabolic process (GO:0019241)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of L-citrulline.
Synonyms: citrulline breakdown; citrulline catabolism; citrulline degradation
obsolete methylglyoxal catabolic process to pyruvate via (R)-S-lactoyl-glutathione (GO:0019243)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the breakdown of methylglyoxal, CH3-CO-CHO, into pyruvate via the intermediate (R)-S-lactoyl-glutathione. Glutathione is used in the first step of the pathway and then regenerated in the second step.
Synonyms: D-lactate biosynthesis from methylglyoxal; D-lactate biosynthetic process from methylglyoxal; glyoxalase system; methylglyoxal breakdown to D-lactate; methylglyoxal catabolism to D-lactate via S-lactoyl-glutathione; methylglyoxal degradation to D-lactate; methylglyoxal detoxification
Comment: This term was obsoleted because it is beyond the scope of GO.
pyruvate fermentation to lactate (GO:0019244)
Namespace: biological_process
Definition: The anaerobic chemical reactions and pathways resulting in the breakdown of pyruvate into lactate.
Synonyms: lactate anabolism from pyruvate; lactate biosynthetic process from pyruvate; lactate formation from pyruvate; lactate synthesis from pyruvate
pyruvate fermentation to D(-)-lactate (GO:0019245)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of D(-)-lactate from other compounds, including pyruvate.
Synonyms: D(-)-lactate anabolism from pyruvate; D(-)-lactate biosynthetic process from pyruvate; D(-)-lactate formation from pyruvate; D(-)-lactate synthesis from pyruvate
pyruvate fermentation to L(+)-lactate (GO:0019246)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of L(+)-lactate from other compounds, including pyruvate.
Synonyms: L(+)-lactate anabolism from pyruvate; L(+)-lactate biosynthetic process from pyruvate; L(+)-lactate formation from pyruvate; L(+)-lactate synthesis from pyruvate; S-lactate biosynthetic process from pyruvate
lactate racemization (GO:0019247)
Namespace: biological_process
Definition: Partial conversion of one lactate enantiomer into another so that the specific optical rotation is decreased, or even reduced to zero, in the resulting mixture.
obsolete methylglyoxal catabolic process to pyruvate via via (R)-lactaldehyde (GO:0019248)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the breakdown of methylglyoxal, CH3-CO-CHO, into pyruvate via the intermediate (R)-lactaldehyde.
Synonyms: D-lactate anabolism from methylglyoxal via (R)-lactaldehyde; D-lactate formation from methylglyoxal via (R)-lactaldehyde; D-lactate synthesis from methylglyoxal via (R)-lactaldehyde
Comment: This term was obsoleted because it is beyond the scope of GO.
lactate biosynthetic process (GO:0019249)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of lactate, the anion of lactic acid.
Synonyms: lactate anabolism; lactate biosynthesis; lactate formation; lactate synthesis
aerobic cobalamin biosynthetic process (GO:0019250)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of cobalamin (vitamin B12) in the presence of oxygen.
Synonyms: aerobic cobalamin anabolism; aerobic cobalamin biosynthesis; aerobic cobalamin formation; aerobic cobalamin synthesis; aerobic vitamin B12 biosynthesis; aerobic vitamin B12 biosynthetic process; cobalamin biosynthesis, aerobic; cobalamin biosynthetic process, aerobic; vitamin B12 biosynthesis, aerobic; vitamin B12 biosynthetic process, aerobic
starch biosynthetic process (GO:0019252)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of starch, the most important reserve polysaccharide in plants.
Synonyms: starch anabolism; starch biosynthesis; starch formation; starch synthesis
reductive pentose-phosphate cycle (GO:0019253)
Namespace: biological_process
Definition: The fixation of carbon dioxide (CO2) as glucose in the chloroplasts of C3 plants; uses ATP and NADPH formed in the light reactions of photosynthesis; carbon dioxide reacts with ribulose 1,5-bisphosphate (catalyzed by the function of ribulose-bisphosphate carboxylase) to yield two molecules of 3-phosphoglycerate; these are then phosphorylated by ATP to 1,3-bisphosphateglyceraldehyde which, in turn, is then reduced by NADPH to glyceraldehyde 3-phosphate. The glyceraldehyde 3-phosphate is converted to fructose 5-phosphate and ribulose 5-phosphate by aldolase and other enzymes; the ribulose 5-phosphate is phosphorylated by ATP to ribulose 1,5-bisphosphate.
Synonyms: C3 photosynthesis; Calvin cycle
Comment: See also the molecular function term 'ribulose-bisphosphate carboxylase activity ; GO:0016984'.
carnitine metabolic process, CoA-linked (GO:0019254)
Namespace: biological_process
Definition: The chemical reactions and pathways involving carnitine, where metabolism is linked to CoA.
Synonyms: carnitine metabolism, CoA-linked
glucose 1-phosphate metabolic process (GO:0019255)
Namespace: biological_process
Definition: The chemical reactions and pathways involving glucose 1-phosphate, a monophosphorylated derivative of glucose with the phosphate group attached to C-1.
Synonyms: glucose 1-phosphate metabolism; glucose 1-phosphate utilization
acrylonitrile catabolic process (GO:0019256)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of acrylonitrile, a colorless, volatile liquid with a pungent odor. Acrylonitrile is used in the production of acrylic fibers, plastics, and synthetic rubbers.
Synonyms: acrylonitrile breakdown; acrylonitrile catabolism; acrylonitrile degradation
obsolete 4-nitrotoluene metabolic process (GO:0019257)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving 4-nitrotoluene, 1-methyl-4-nitrobenzene. It is a light yellow liquid with a weak aromatic odor.
Synonyms: 4-nitrotoluene metabolism; 4NT metabolic process; 4NT metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
1,2-dichloroethane catabolic process (GO:0019260)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of 1,2-dichloroethane, a major commodity chemical used, for example, in the manufacture of vinyl chloride.
Synonyms: 1,2-dichloroethane breakdown; 1,2-dichloroethane catabolism; 1,2-dichloroethane degradation
1,4-dichlorobenzene catabolic process (GO:0019261)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of 1,4-dichlorobenzene (p-dichlorobenzene or paramoth), a derivative of benzene with two chlorine atoms attached at opposite positions on the ring.
Synonyms: 1,4-dichlorobenzene breakdown; 1,4-dichlorobenzene catabolism; 1,4-dichlorobenzene degradation
N-acetylneuraminate catabolic process (GO:0019262)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of N-acetylneuraminate, the anion of 5-(acetylamino)-3,5-dideoxy-D-glycero-D-galacto-non-3-ulosonic acid.
Synonyms: N-acetylneuraminate breakdown; N-acetylneuraminate catabolism; N-acetylneuraminate degradation
adamantanone catabolic process (GO:0019263)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of adamantanone, tricyclo(3.3.1.13,7)decanone, a white crystalline solid used as an intermediate for microelectronics in the production of photoresists.
Synonyms: adamantanone breakdown; adamantanone catabolism; adamantanone degradation
obsolete glycine biosynthetic process from L-serine (GO:0019264)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of glycine from L-serine.
Synonyms: glycine anabolism from serine; glycine formation from serine; glycine synthesis from serine
Comment: The reason for obsoletion is that this term represents a GO-CAM model.
obsolete glycine biosynthetic process, by transamination of glyoxylate (GO:0019265)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of glycine by the transamination of glyoxylate.
Synonyms: glycine anabolism, by transamination of glyoxylate; glycine formation, by transamination of glyoxylate; glycine synthesis, by transamination of glyoxylate
Comment: The reason for obsoletion is that this term represents a GO-CAM model.
obsolete L-asparagine biosynthetic process from L-cysteine (GO:0019267)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of L-asparagine from other compounds, including L-cysteine.
Synonyms: asparagine anabolism from cysteine; asparagine formation from cysteine; asparagine synthesis from cysteine
Comment: This term was obsoleted because it is too specific and is outside the scope of GO.
obsolete glutamate biosynthetic process, using glutamate dehydrogenase (NAD(P)+) (GO:0019268)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of glutamate, catalyzed by the enzyme glutamate dehydrogenase (NADP+).
Synonyms: glutamate anabolism, using glutamate dehydrogenase (NAD(P)+); glutamate biosynthetic process, using glutamate dehydrogenase (NAD(P)+); glutamate formation, using glutamate dehydrogenase (NAD(P)+); glutamate synthesis, using glutamate dehydrogenase (NAD(P)+)
Comment: This term was made obsolete because it represents a molecular function.
obsolete glutamate biosynthetic process, using glutamate synthase (NADPH) (GO:0019269)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of glutamate, catalyzed by the enzyme glutamate synthase (NADPH).
Synonyms: glutamate anabolism, using glutamate synthase (NADPH); glutamate biosynthetic process, using glutamate synthase (NADPH); glutamate formation, using glutamate synthase (NADPH); glutamate synthesis, using glutamate synthase (NADPH)
Comment: This term was made obsolete because it refers to a molecular function.
aerobactin biosynthetic process (GO:0019270)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of aerobactin (C22H36N4O13), a hydroxamate iron transport compound. It is a conjugate of 6-(N-acetyl-N-hydroxylamine)-2-aminohexanoic acid and citric acid.
Synonyms: aerobactin anabolism; aerobactin biosynthesis; aerobactin formation; aerobactin synthesis
aerobactin transport (GO:0019271)
Namespace: biological_process
Definition: The directed movement of the hydroxamate iron transport compound aerobactin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Aerobactin (C22H36N4O13) is a conjugate of 6-(N-acetyl-N-hydroxylamine)-2-aminohexanoic acid and citric acid.
obsolete L-alanine biosynthetic process from pyruvate (GO:0019272)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of alanine from other compounds, including pyruvate.
Synonyms: L-alanine anabolism from pyruvate; L-alanine formation from pyruvate; L-alanine synthesis from pyruvate
Comment: The reason for obsoletion is that this term represents a GO-CAM model.
obsolete L-alanine biosynthetic process via ornithine (GO:0019273)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of L-alanine, via the intermediate ornithine.
Synonyms: L-alanine anabolism via ornithine; L-alanine formation via ornithine; L-alanine synthesis via ornithine
Comment: The reason for obsoletion is that there is no evidence that this process exists in vivo.
UDP-N-acetylgalactosamine metabolic process (GO:0019276)
Namespace: biological_process
Definition: The chemical reactions and pathways involving UDP-N-acetylgalactosamine, a substance composed of N-acetylgalactosamine, a common structural unit of oligosaccharides, in glycosidic linkage with uridine diphosphate.
Synonyms: UDP-N-acetylgalactosamine metabolism
UDP-N-acetylgalactosamine biosynthetic process (GO:0019277)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of UDP-N-acetylgalactosamine, a substance composed of N-acetylgalactosamine, a common structural unit of oligosaccharides, in glycosidic linkage with uridine diphosphate.
Synonyms: UDP-N-acetylgalactosamine anabolism; UDP-N-acetylgalactosamine biosynthesis; UDP-N-acetylgalactosamine formation; UDP-N-acetylgalactosamine synthesis
obsolete UDP-N-acetylgalactosamine catabolic process (GO:0019278)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the breakdown of UDP-N-acetylgalactosamine, a substance composed of N-acetylgalactosamine, a common structural unit of oligosaccharides, in glycosidic linkage with uridine diphosphate.
Synonyms: UDP-N-acetylgalactosamine breakdown; UDP-N-acetylgalactosamine catabolism; UDP-N-acetylgalactosamine degradation
Comment: The reason for obsoletion is that this term is not clearly defined.
obsolete L-methionine biosynthetic process from L-homoserine via cystathionine (GO:0019279)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of L-methionine from L-homoserine, via the intermediate cystathionine.
Synonyms: L-methionine anabolism from L-homoserine via cystathionine; L-methionine formation from L-homoserine via cystathionine; L-methionine synthesis from L-homoserine via cystathionine; methionine biosynthetic process from L-homoserine via cystathionine
Comment: This term was obsoleted because it represents a specific pathway beyond the specificity of GO.
obsolete L-methionine biosynthetic process from L-homoserine via O-acetyl-L-homoserine (GO:0019280)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of methionine from L-homoserine, via the intermediate O-acetyl-L-homoserine using sulfur from hydrogen sulfide assimilation.
Comment: This term was obsoleted because it represents a specific pathway beyond the specificity of GO.
obsolete L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine (GO:0019281)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of L-methionine from other compounds, including homoserine, via the intermediates O-succinyl-L-homoserine and cystathionine.
Synonyms: L-methionine anabolism from homoserine via O-succinyl-L-homoserine and cystathionine; L-methionine formation from homoserine via O-succinyl-L-homoserine and cystathionine; L-methionine synthesis from homoserine via O-succinyl-L-homoserine and cystathionine; methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
Comment: This term was obsoleted because it represents a specific pathway beyond the specificity of GO.
obsolete L-methionine biosynthetic process from L-homoserine via O-phospho-L-homoserine and cystathionine (GO:0019283)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of L-methionine from L-homoserine, via the intermediates O-phospho-L-homoserine and cystathionine.
Synonyms: L-methionine formation from O-phospho-L-homoserine and cystathionine; L-methionine synthesis from O-phospho-L-homoserine and cystathionine; methionine biosynthetic process from O-phospho-L-homoserine and cystathionine
Comment: This term was obsoleted because it represents a specific pathway beyond the specificity of GO.
obsolete L-methionine salvage from S-adenosylmethionine (GO:0019284)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of L-methionine from S-adenosylmethionine.
Synonyms: L-methionine formation from S-adenosylmethionine; L-methionine synthesis from S-adenosylmethionine
Comment: This term was obsoleted because it was not clearly defined and usage has been inconsistent.
glycine betaine biosynthetic process from choline (GO:0019285)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of betaine (N-trimethylglycine) from the oxidation of choline.
Synonyms: choline oxidation; glycine betaine anabolism from choline; glycine betaine formation from choline; glycine betaine synthesis from choline; N-trimethylglycine biosynthesis from choline; N-trimethylglycine biosynthetic process from choline
glycine betaine biosynthetic process from glycine (GO:0019286)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of glycine betaine from other compounds, including glycine.
Synonyms: glycine betaine anabolism from glycine; glycine betaine formation from glycine; glycine betaine synthesis from glycine; N-trimethylglycine biosynthesis from glycine; N-trimethylglycine biosynthetic process from glycine
isopentenyl diphosphate biosynthetic process, mevalonate pathway (GO:0019287)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate, via the intermediate mevalonate. This pathway converts acetate, in the form of acetyl-CoA, to isopentenyl diphosphate (IPP), the fundamental unit in isoprenoid biosynthesis, through a series of mevalonate intermediates.
Synonyms: Ac-MVA pathway; acetate-mevalonate pathway; isopentenyl diphosphate anabolism, mevalonate pathway; isopentenyl diphosphate biosynthetic process via mevalonate; isopentenyl diphosphate formation, mevalonate pathway; isopentenyl diphosphate synthesis, mevalonate pathway
isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (GO:0019288)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate by the mevalonate-independent pathway. Isopentenyl diphosphate (IPP) is the fundamental unit in isoprenoid biosynthesis and is biosynthesized from pyruvate and glyceraldehyde 3-phosphate via intermediates, including 1-deoxy-D-xylulose 5-phosphate.
Synonyms: isopentenyl diphosphate anabolism, mevalonate-independent pathway; isopentenyl diphosphate biosynthesis, mevalonate-independent; isopentenyl diphosphate biosynthesis, non-mevalonate pathway; isopentenyl diphosphate biosynthetic process via 1-deoxy-D-xylulose 5-phosphate; isopentenyl diphosphate biosynthetic process, MEP pathway; isopentenyl diphosphate biosynthetic process, mevalonate-independent; isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway; isopentenyl diphosphate biosynthetic process, non-mevalonate pathway; isopentenyl diphosphate formation, mevalonate-independent pathway; isopentenyl diphosphate synthesis, mevalonate-independent pathway; mevalonate-independent isopentenyl diphosphate biosynthesis; mevalonate-independent isopentenyl diphosphate biosynthetic process; non-MVA pathway
rhizobactin 1021 biosynthetic process (GO:0019289)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of rhizobactin 1021, (E)-4-((3-(acetylhydroxyamino)propyl)-amino)-2-hydroxy-(2-(2-(3-(hydroxy(1-oxo-2-decenyl)amino)propyl)amino)-2-oxoethyl)-4-oxobutanoic acid, a siderophore produced by Sinorhizobium meliloti.
Synonyms: rhizobactin 1021 anabolism; rhizobactin 1021 biosynthesis; rhizobactin 1021 biosynthetic process, peptide formation; rhizobactin 1021 biosynthetic process, peptide modification; rhizobactin 1021 formation; rhizobactin 1021 synthesis
siderophore biosynthetic process (GO:0019290)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of siderophores, low molecular weight Fe(III)-chelating substances made by aerobic or facultatively anaerobic bacteria, especially when growing under iron deficient conditions. The complexes of Fe(3+)-siderophores have very high stability constants and are taken up by specific transport systems by microorganisms; the subsequent release of iron requires enzymatic action.
Synonyms: siderochrome biosynthesis; siderochrome biosynthetic process; siderophore anabolism; siderophore biosynthesis; siderophore biosynthetic process, peptide formation; siderophore biosynthetic process, peptide modification; siderophore formation; siderophore synthesis
obsolete L-tyrosine biosynthetic process, by oxidation of phenylalanine (GO:0019293)
Namespace: biological_process
Definition: OBSOLETE. The conversion of phenylalanine to tyrosine.
Synonyms: L-tyrosine biosynthesis IV; tyrosine anabolism, by oxidation of phenylalanine; tyrosine formation, by oxidation of phenylalanine; tyrosine synthesis, by oxidation of phenylalanine
Comment: The reason for obsoletion is that this term represents a GO-CAM model
keto-3-deoxy-D-manno-octulosonic acid biosynthetic process (GO:0019294)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of keto-3-deoxy-D-manno-octulosonic acid, an acidic sugar present in lipopolysaccharides of the outer membranes of some Gram-negative bacteria.
Synonyms: KDO biosynthesis; KDO biosynthetic process; keto-3-deoxy-D-manno-octulosonic acid anabolism; keto-3-deoxy-D-manno-octulosonic acid biosynthesis; keto-3-deoxy-D-manno-octulosonic acid formation; keto-3-deoxy-D-manno-octulosonic acid synthesis; ketodeoxyoctanoate biosynthetic process
coenzyme M biosynthetic process (GO:0019295)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of coenzyme M (2-thioethansulfonate), a coenzyme involved in the utilization of methane by methanogenic prokaryotes.
Synonyms: coenzyme M anabolism; coenzyme M biosynthesis; coenzyme M formation; coenzyme M synthesis
obsolete coenzyme M metabolic process (GO:0019296)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving coenzyme M (2-thioethansulfonate), a coenzyme involved in the utilization of methane by methanogenic prokaryotes.
Synonyms: coenzyme M metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.