LiteFold/GO huggingface dataset:
obsolete nucleoid organization (GO:0090143)
Namespace: biological_process
Definition: OBSOLETE. A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the nucleoid. The nucleoid is the region of a bacterial cell, virion, mitochondrion or chloroplast to which the DNA is confined.
Synonyms: nucleoid organisation
Comment: The reason for obsoletion is that this represents a phenotype.
obsolete mitochondrial nucleoid organization (GO:0090144)
Namespace: biological_process
Definition: OBSOLETE. A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the mitochondrial nucleoid. The mitochondrial nucleoid is the region of a mitochondrion to which the DNA is confined.
Comment: The reason for obsoletion is that this represents a phenotype.
obsolete mitochondrial nucleoid organization involved in mitochondrial fission (GO:0090145)
Namespace: biological_process
Definition: OBSOLETE. A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the mitochondrial nucleoid that contributes to mitochondrial division.
Synonyms: mitochondrial nucleoid organisation involved in mitochondrial fission
Comment: This term was obsoleted because it represented a phenotype.
obsolete establishment of mitochondrion localization involved in mitochondrial fission (GO:0090146)
Namespace: biological_process
Definition: OBSOLETE. The directed movement of mitochondria to the correct region of the cell that contributes to the process of mitochondrial fission.
Synonyms: establishment of mitochondrion localisation involved in mitochondrial fission; mitochondrial localization involved in mitochondrial fission
Comment: This term was obsoleted because it represented a phenotype.
obsolete regulation of establishment of mitochondrion localization involved in mitochondrial fission (GO:0090147)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of the directed movement of mitochondria to the correct region of the cell that contributes to the process of mitochondrial fission.
Synonyms: regulation of establishment of mitochondrion localisation involved in mitochondrial fission; regulation of mitochondrial localization involved in mitochondrial fission
Comment: This term was obsoleted because it represented a phenotype.
membrane fission (GO:0090148)
Namespace: biological_process
Definition: A process that is carried out at the cellular level which results in the separation of a single continuous membrane into two membranes.
Synonyms: membrane scission
establishment of protein localization to membrane (GO:0090150)
Namespace: biological_process
Definition: The directed movement of a protein to a specific location in a membrane.
Synonyms: establishment of protein localisation in membrane; establishment of protein localization in membrane
obsolete establishment of protein localization to mitochondrial membrane (GO:0090151)
Namespace: biological_process
Definition: OBSOLETE. The directed movement of a protein to a specific location in the mitochondrial membrane.
Synonyms: establishment of protein localisation in mitochondrial membrane; establishment of protein localization in mitochondrial membrane
Comment: The reason for obsoletion is that this term was added in error.
obsolete establishment of protein localization to mitochondrial membrane involved in mitochondrial fission (GO:0090152)
Namespace: biological_process
Definition: OBSOLETE. The directed movement of a protein to a specific location in the mitochondrial membrane that contributes to mitochondrial fission.
Synonyms: establishment of protein localisation in mitochondrial membrane involved in mitochondrial fission; establishment of protein localization in mitochondrial membrane involved in mitochondrial fission
Comment: The reason for obsoletion is that this term was added in error.
regulation of sphingolipid biosynthetic process (GO:0090153)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency or extent of sphingolipid biosynthesis. Sphingolipid biosynthesis is the chemical reactions and pathways resulting in the formation of sphingolipids, any of a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid).
positive regulation of sphingolipid biosynthetic process (GO:0090154)
Namespace: biological_process
Definition: Any process that increases the rate, frequency or extent of sphingolipid biosynthesis. Sphingolipid biosynthesis is the chemical reactions and pathways resulting in the formation of sphingolipids, any of a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid).
negative regulation of sphingolipid biosynthetic process (GO:0090155)
Namespace: biological_process
Definition: Any process that decreases the rate, frequency or extent of sphingolipid biosynthesis. Sphingolipid biosynthesis is the chemical reactions and pathways resulting in the formation of sphingolipids, any of a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid).
Synonyms: negative regulation of sphingolipid biosynthesis involved in cellular sphingolipid homeostasis
intracellular sphingolipid homeostasis (GO:0090156)
Namespace: biological_process
Definition: A homeostatic process involved in the maintenance of a steady state level of sphingolipids within a cell.
Synonyms: cellular sphingolipid homeostasis
endoplasmic reticulum membrane organization (GO:0090158)
Namespace: biological_process
Definition: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an endoplasmic reticulum membrane.
Synonyms: endoplasmic reticulum membrane organisation
obsolete sphingolipid biosynthesis involved in endoplasmic reticulum membrane organization (GO:0090159)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of sphingolipids that contributes to endoplasmic reticulum membrane organization.
Synonyms: sphingolipid biosynthesis involved in endoplasmic reticulum membrane organisation
Comment: This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM.
Golgi to lysosome transport (GO:0090160)
Namespace: biological_process
Definition: The directed movement of substances from the Golgi to lysosomes.
Golgi ribbon formation (GO:0090161)
Namespace: biological_process
Definition: The formation of a continuous ribbon of interconnected Golgi stacks of flat cisternae.
establishment of epithelial cell polarity (GO:0090162)
Namespace: biological_process
Definition: The specification and formation of anisotropic intracellular organization of an epithelial cell.
establishment of epithelial cell planar polarity (GO:0090163)
Namespace: biological_process
Definition: The specification and formation of the polarity of an epithelial cell along the plane of the epithelial tissue.
Golgi disassembly (GO:0090166)
Namespace: biological_process
Definition: A cellular process that results in the breakdown of a Golgi apparatus that contributes to Golgi inheritance.
Synonyms: Golgi apparatus disassembly
Golgi distribution to daughter cells (GO:0090167)
Namespace: biological_process
Definition: Any process in which disassembled Golgi vesicles are localized into daughter cells upon cell division.
Synonyms: Golgi apparatus distribution to daughter cells
Golgi reassembly (GO:0090168)
Namespace: biological_process
Definition: The reformation of the Golgi following its breakdown and partitioning contributing to Golgi inheritance.
Synonyms: Golgi apparatus reassembly
regulation of spindle assembly (GO:0090169)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency or extent of spindle assembly. Spindle assembly is the aggregation, arrangement and bonding together of a set of components to form the spindle, the array of microtubules and associated molecules that serves to move duplicated chromosomes apart.
Synonyms: regulation of spindle formation
obsolete microtubule cytoskeleton organization involved in homologous chromosome segregation (GO:0090172)
Namespace: biological_process
Definition: OBSOLETE. A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins that contributes to chromosomal pairing and precedes synapsis.
Synonyms: microtubule cytoskeleton organisation involved in homologous chromosome segregation; microtubule organization involved in chromosome pairing
Comment: The reason for obsoletion is that this term was added in error.
regulation of synaptonemal complex assembly (GO:0090173)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of synaptonemal complex assembly. Synaptonemal complex assembly is the cell cycle process in which the synaptonemal complex, a structure that holds paired chromosomes together during prophase I of meiosis and that promotes genetic recombination, is formed.
organelle membrane fusion (GO:0090174)
Namespace: biological_process
Definition: The joining of two lipid bilayers to form a single organelle membrane.
regulation of establishment of planar polarity (GO:0090175)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency or extent of the establishment of planar polarity, the coordinated organization of groups of cells in a tissue, such that they all orient to similar coordinates.
microtubule cytoskeleton organization involved in establishment of planar polarity (GO:0090176)
Namespace: biological_process
Definition: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins and contributes to the establishment of planar polarity.
Synonyms: microtubule cytoskeleton organisation involved in establishment of planar polarity
establishment of planar polarity involved in neural tube closure (GO:0090177)
Namespace: biological_process
Definition: Coordinated organization of groups of cells in the plane of an epithelium that contributes to the closure of the neural tube.
regulation of establishment of planar polarity involved in neural tube closure (GO:0090178)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency, or extent of the establishment of planar polarity involved in neural tube closure, the coordinated organization of groups of cells in the plane of an epithelium that contributes to the closure of the neural tube.
positive regulation of thiamine biosynthetic process (GO:0090180)
Namespace: biological_process
Definition: Any process that increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of thiamine.
Synonyms: positive regulation of thiamin biosynthetic process
regulation of cholesterol metabolic process (GO:0090181)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency, or extent of cholesterol metabolism, the chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones.
regulation of secretion of lysosomal enzymes (GO:0090182)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency or extent of secretion of lysosomal enzymes, the controlled release of lysosomal enzymes by a cell.
regulation of kidney development (GO:0090183)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency or extent of kidney development. Kidney development is the process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine.
Synonyms: regulation of nephrogenesis
positive regulation of kidney development (GO:0090184)
Namespace: biological_process
Definition: Any process that increases the rate, frequency or extent of kidney development. Kidney development is the process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine.
Synonyms: positive regulation of nephrogenesis
negative regulation of kidney development (GO:0090185)
Namespace: biological_process
Definition: Any process that decreases the rate, frequency or extent of kidney development. Kidney development is the process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine.
Synonyms: negative regulation of nephrogenesis
regulation of pancreatic juice secretion (GO:0090186)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency or extent of pancreatic juice secretion, the regulated release of pancreatic juice by the exocrine pancreas into the upper part of the intestine.
positive regulation of pancreatic juice secretion (GO:0090187)
Namespace: biological_process
Definition: Any process that increases the rate, frequency or extent of pancreatic juice secretion, the regulated release of pancreatic juice by the exocrine pancreas into the upper part of the intestine.
negative regulation of pancreatic juice secretion (GO:0090188)
Namespace: biological_process
Definition: Any process that decreases the rate, frequency or extent of pancreatic juice secretion, the regulated release of pancreatic juice by the exocrine pancreas into the upper part of the intestine.
positive regulation of branching involved in ureteric bud morphogenesis (GO:0090190)
Namespace: biological_process
Definition: Any process that increases the rate, frequency or extent of branching involved in ureteric bud morphogenesis, the process in which the branching structure of the ureteric bud is generated and organized. The ureteric bud is an epithelial tube that grows out from the metanephric duct. The bud elongates and branches to give rise to the ureter and kidney collecting tubules.
negative regulation of branching involved in ureteric bud morphogenesis (GO:0090191)
Namespace: biological_process
Definition: Any process that decreases the rate, frequency or extent of branching involved in ureteric bud morphogenesis, the process in which the branching structure of the ureteric bud is generated and organized. The ureteric bud is an epithelial tube that grows out from the metanephric duct. The bud elongates and branches to give rise to the ureter and kidney collecting tubules.
regulation of glomerulus development (GO:0090192)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency or extent of glomerulus development, the progression of the glomerulus over time from its initial formation until its mature state. The glomerulus is a capillary tuft surrounded by Bowman's capsule in nephrons of the vertebrate kidney.
positive regulation of glomerulus development (GO:0090193)
Namespace: biological_process
Definition: Any process that increases the rate, frequency or extent of glomerulus development, the progression of the glomerulus over time from its initial formation until its mature state. The glomerulus is a capillary tuft surrounded by Bowman's capsule in nephrons of the vertebrate kidney.
negative regulation of glomerulus development (GO:0090194)
Namespace: biological_process
Definition: Any process that decreases the rate, frequency or extent of glomerulus development, the progression of the glomerulus over time from its initial formation until its mature state. The glomerulus is a capillary tuft surrounded by Bowman's capsule in nephrons of the vertebrate kidney.
regulation of release of cytochrome c from mitochondria (GO:0090199)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency or extent of release of cytochrome c from mitochondria, the process in which cytochrome c is enabled to move from the mitochondrial intermembrane space into the cytosol, which is an early step in apoptosis and leads to caspase activation.
Comment: The release of cytochrome c from mitochondria is a central event in the signaling phase of the apoptotic process, and it is often used by researchers to monitor this type of cell death. Any event that induces apoptosis will at some point induce the release of cytochrome c from mitochondria. Therefore, this term should only be used to annotate gene products that directly regulate this process.
positive regulation of release of cytochrome c from mitochondria (GO:0090200)
Namespace: biological_process
Definition: Any process that increases the rate, frequency or extent of release of cytochrome c from mitochondria, the process in which cytochrome c is enabled to move from the mitochondrial intermembrane space into the cytosol, which is an early step in apoptosis and leads to caspase activation.
Comment: The release of cytochrome c from mitochondria is a central event in the signaling phase of the apoptotic process, and it is often used by researchers to monitor this type of cell death. Any event that induces apoptosis will at some point induce the release of cytochrome c from mitochondria. Therefore, this term should only be used to annotate gene products that directly and positively regulate this process.
negative regulation of release of cytochrome c from mitochondria (GO:0090201)
Namespace: biological_process
Definition: Any process that decreases the rate, frequency or extent of release of cytochrome c from mitochondria, the process in which cytochrome c is enabled to move from the mitochondrial intermembrane space into the cytosol, which is an early step in apoptosis and leads to caspase activation.
Comment: The release of cytochrome c from mitochondria is a central event in the signaling phase of the apoptotic process, and it is often used by researchers to monitor this type of cell death. Any event that induces apoptosis will at some point induce the release of cytochrome c from mitochondria. Therefore, this term should only be used to annotate gene products that directly and negatively regulate this process.
obsolete gene looping (GO:0090202)
Namespace: biological_process
Definition: OBSOLETE. The formation and maintenance of DNA loops that juxtapose sequentially separated regions of RNA polymerase II-transcribed genes.
Comment: This term was obsoleted because it was defined like a molecular function.
obsolete transcriptional activation by promoter-terminator looping (GO:0090203)
Namespace: biological_process
Definition: OBSOLETE. The formation and maintenance of DNA loops that juxtapose the promoter and terminator regions of RNA polymerase II-transcribed genes and activate transcription from an RNA polymerase II promoter.
Synonyms: transcriptional activation by memory gene loops
Comment: This term was obsoleted because it was defined like a molecular function.
protein localization to nuclear pore (GO:0090204)
Namespace: biological_process
Definition: A process in which a protein is transported to, or maintained in, a nuclear pore.
Synonyms: protein localisation to nuclear pore
positive regulation of cholesterol metabolic process (GO:0090205)
Namespace: biological_process
Definition: Any process that increases the rate, frequency, or extent of cholesterol metabolism, the chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones.
negative regulation of cholesterol metabolic process (GO:0090206)
Namespace: biological_process
Definition: Any process that decreases the rate, frequency, or extent of cholesterol metabolism, the chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones.
regulation of triglyceride metabolic process (GO:0090207)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving triglyceride, any triester of glycerol.
positive regulation of triglyceride metabolic process (GO:0090208)
Namespace: biological_process
Definition: Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving triglyceride, any triester of glycerol.
negative regulation of triglyceride metabolic process (GO:0090209)
Namespace: biological_process
Definition: Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving triglyceride, any triester of glycerol.
regulation of establishment of blood-brain barrier (GO:0090210)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency or extent of the establishment of the blood-brain barrier, a selectively permeable structural and functional barrier that exists between the capillaries and the brain.
Synonyms: regulation of establishment of BBB
positive regulation of establishment of blood-brain barrier (GO:0090211)
Namespace: biological_process
Definition: Any process that increases the rate, frequency or extent of the establishment of the blood-brain barrier, a selectively permeable structural and functional barrier that exists between the capillaries and the brain.
Synonyms: positive regulation of establishment of BBB
negative regulation of establishment of blood-brain barrier (GO:0090212)
Namespace: biological_process
Definition: Any process that decreases the rate, frequency or extent of the establishment of the blood-brain barrier, a selectively permeable structural and functional barrier that exists between the capillaries and the brain.
Synonyms: negative regulation of establishment of BBB
regulation of radial pattern formation (GO:0090213)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency or extent of radial pattern formation, the regionalization process that results in defined areas around a point in which specific types of cell differentiation will occur.
Synonyms: regulation of radial pattern specification
spongiotrophoblast layer developmental growth (GO:0090214)
Namespace: biological_process
Definition: The increase in size or mass of the spongiotrophoblast layer of the placenta where the increase in size or mass contributes to the progression of that layer over time from its formation to its mature state.
obsolete regulation of 1-phosphatidylinositol-4-phosphate 5-kinase activity (GO:0090215)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of the catalysis of the reaction: ATP + 1-phosphatidyl-1D-myo-inositol 4-phosphate = ADP + 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate.
Comment: This term was obsoleted because it represents a molecular function.
obsolete positive regulation of 1-phosphatidylinositol-4-phosphate 5-kinase activity (GO:0090216)
Namespace: biological_process
Definition: OBSOLETE. Any process that increases the frequency, rate or extent of the catalysis of the reaction: ATP + 1-phosphatidyl-1D-myo-inositol 4-phosphate = ADP + 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate.
Comment: This term was obsoleted because it represents a molecular function.
obsolete negative regulation of 1-phosphatidylinositol-4-phosphate 5-kinase activity (GO:0090217)
Namespace: biological_process
Definition: OBSOLETE. Any process that decreases the frequency, rate or extent of the catalysis of the reaction: ATP + 1-phosphatidyl-1D-myo-inositol 4-phosphate = ADP + 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate.
Comment: This term was obsoleted because it represents a molecular function.