LiteFold/GO huggingface dataset:
obsolete fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation (GO:0060825)
Namespace: biological_process
Definition: OBSOLETE. The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands contributing to the anterior/posterior pattern of the neural plate.
Synonyms: fibroblast growth factor receptor signalling pathway involved in neural plate anterior/posterior pattern formation
Comment: This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.
obsolete transforming growth factor beta receptor signaling pathway involved in neural plate anterior/posterior pattern formation (GO:0060826)
Namespace: biological_process
Definition: OBSOLETE. The series of molecular signals initiated by an extracellular ligand binding to a transforming growth factor beta receptor on the surface of a target cell, which contributes to the formation of the neural plate anterior/posterior pattern.
Synonyms: transforming growth factor beta receptor signalling pathway involved in neural plate anterior/posterior pattern formation
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete regulation of canonical Wnt signaling pathway involved in neural plate anterior/posterior pattern formation (GO:0060827)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the rate, frequency, or extent of Wnt signaling through beta-catenin that results in the formation of the neural plate anterior/posterior pattern.
Synonyms: regulation of canonical Wnt receptor signaling pathway involved in neural plate anterior/posterior pattern formation; regulation of canonical Wnt receptor signalling pathway involved in neural plate anterior/posterior pattern formation; regulation of canonical Wnt-activated signaling pathway involved in neural plate anterior/posterior pattern formation; regulation of Wnt receptor signaling pathway through beta-catenin involved in neural plate anterior/posterior pattern formation
Comment: This term was obsoleted because it represents a GO-CAM model.
regulation of canonical Wnt signaling pathway (GO:0060828)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency, or extent of the Wnt signaling pathway through beta-catenin, the series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes.
Synonyms: catenin import into nucleus; regulation of canonical Wnt receptor signaling pathway; regulation of canonical Wnt receptor signalling pathway; regulation of canonical Wnt-activated signaling pathway; regulation of catenin import into nucleus; regulation of catenin protein nuclear translocation; regulation of Wnt receptor signaling pathway through beta-catenin
obsolete negative regulation of canonical Wnt signaling pathway involved in neural plate anterior/posterior pattern formation (GO:0060829)
Namespace: biological_process
Definition: OBSOLETE. Any process that decreases the rate, frequency, or extent of the Wnt signaling pathway through beta-catenin in the anterior end of the neural plate. This regulation sets up a Wnt signaling gradient along the anterior/posterior axis.
Synonyms: negative regulation of canonical Wnt receptor signaling pathway involved in neural plate anterior/posterior pattern; negative regulation of canonical Wnt receptor signalling pathway involved in neural plate anterior/posterior pattern formation; negative regulation of canonical Wnt-activated signaling pathway involved in neural plate anterior/posterior pattern; negative regulation of Wnt receptor signaling pathway through beta-catenin involved in neural plate anterior/posterior pattern formation
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete ciliary receptor clustering involved in smoothened signaling pathway (GO:0060830)
Namespace: biological_process
Definition: OBSOLETE. Grouping of smoothened or patched receptors in a cilium, contributing to the smoothened signaling pathway.
Synonyms: ciliary receptor clustering involved in hedgehog signaling pathway; ciliary receptor clustering involved in hh signaling pathway; ciliary receptor clustering involved in smoothened signalling pathway
Comment: This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.
smoothened signaling pathway involved in dorsal/ventral neural tube patterning (GO:0060831)
Namespace: biological_process
Definition: The series of molecular signals generated as a consequence of activation of the transmembrane protein Smoothened contributing to the dorsal/ventral pattern of the neural tube.
Synonyms: hedgehog signaling pathway involved in dorsal/ventral neural tube patterning; hh signaling pathway involved in dorsal/ventral neural tube patterning; smoothened signalling pathway involved in dorsal/ventral neural tube patterning
oocyte animal/vegetal axis specification (GO:0060832)
Namespace: biological_process
Definition: The establishment, maintenance and elaboration of the animal/vegetal axis in the oocyte. The animal/vegetal axis of an oocyte is defined by the placement of the nucleus in the oocyte and can sometimes be identified by the asymmetric placement of other substances such as yolk in the oocyte. The pole of the egg that is closest to the nucleus defines the animal end, with the axis passing through the nucleus.
obsolete Wnt signaling pathway involved in animal/vegetal axis specification (GO:0060833)
Namespace: biological_process
Definition: OBSOLETE. The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell contributing to the specification of the animal/vegetal axis of an oocyte.
Synonyms: Wnt receptor signaling pathway involved in animal/vegetal axis specification; Wnt receptor signalling pathway involved in animal/vegetal axis specification; Wnt- activated signaling pathway involved in animal/vegetal axis specification
Comment: This term was obsoleted because it represents a GO-CAM model.
oral/aboral axis specification (GO:0060834)
Namespace: biological_process
Definition: The establishment, maintenance and elaboration of a line that delineates the mouth and the anus of an embryo.
Synonyms: oral/aboral axis determination
obsolete transforming growth factor receptor beta signaling pathway involved in oral/aboral axis specification (GO:0060835)
Namespace: biological_process
Definition: OBSOLETE. The series of molecular signals initiated by an extracellular ligand binding to a transforming growth factor beta receptor on the surface of a target cell, which contributes to the specification of the oral/aboral axis.
Synonyms: transforming growth factor receptor beta signalling pathway involved in oral/aboral axis specification
Comment: This term was obsoleted because it represents a GO-CAM model.
lymphatic endothelial cell differentiation (GO:0060836)
Namespace: biological_process
Definition: The process in which a venous blood vessel endothelial cell acquires specialized features of a lymphatic vessel endothelial cell, a thin flattened cell that lines the inside surfaces of lymph vessels.
blood vessel endothelial cell differentiation (GO:0060837)
Namespace: biological_process
Definition: The process in which a relatively unspecialized cell acquires specialized features of a blood vessel endothelial cell, a thin flattened cell that lines the inside surfaces of blood vessels.
lymphatic endothelial cell fate commitment (GO:0060838)
Namespace: biological_process
Definition: The commitment of a venous blood vessel endothelial cell to a lymphatic endothelial cell fate and its capacity to differentiate into a lymphatic endothelial cell.
endothelial cell fate commitment (GO:0060839)
Namespace: biological_process
Definition: The commitment of a cell to an endothelial cell fate and its capacity to differentiate into an endothelial cell.
artery development (GO:0060840)
Namespace: biological_process
Definition: The progression of the artery over time, from its initial formation to the mature structure. An artery is a blood vessel that carries blood away from the heart to a capillary bed.
venous blood vessel development (GO:0060841)
Namespace: biological_process
Definition: The progression of the venous blood vessel over time from its initial formation to the mature structure. Venous blood vessels carry blood back to the heart after the capillary bed.
arterial endothelial cell differentiation (GO:0060842)
Namespace: biological_process
Definition: The process in which a relatively unspecialized endothelial cell acquires specialized features of an arterial endothelial cell, a thin flattened cell that lines the inside surfaces of arteries.
venous endothelial cell differentiation (GO:0060843)
Namespace: biological_process
Definition: The process in which a relatively unspecialized endothelial cell acquires specialized features of a venous endothelial cell, a thin flattened cell that lines the inside surfaces of veins.
arterial endothelial cell fate commitment (GO:0060844)
Namespace: biological_process
Definition: The commitment of a cell to an arterial endothelial cell fate and its capacity to differentiate into an arterial endothelial cell.
venous endothelial cell fate commitment (GO:0060845)
Namespace: biological_process
Definition: The commitment of a cell to a venous endothelial cell fate and its capacity to differentiate into an venous endothelial cell.
blood vessel endothelial cell fate commitment (GO:0060846)
Namespace: biological_process
Definition: The commitment of a cell to a blood vessel endothelial cell fate and its capacity to differentiate into a blood vessel endothelial cell.
endothelial cell fate specification (GO:0060847)
Namespace: biological_process
Definition: The process involved in the specification of identity of an endothelial cell. Once specification has taken place, a cell will be committed to differentiate down a specific pathway if left in its normal environment.
endothelial cell fate determination (GO:0060848)
Namespace: biological_process
Definition: A process involved in cell fate commitment of an endothelial cell. Once determination has taken place, a cell becomes committed to differentiate down a particular pathway regardless of its environment.
obsolete regulation of transcription involved in lymphatic endothelial cell fate commitment (GO:0060849)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the commitment of a venous endothelial cell to a lymphatic endothelial cell.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete regulation of transcription involved in cell fate commitment (GO:0060850)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the commitment of a cell to a specific fate.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete vascular endothelial growth factor receptor signaling pathway involved in lymphatic endothelial cell fate commitment (GO:0060851)
Namespace: biological_process
Definition: OBSOLETE. The series of molecular signals generated as a consequence of vascular endothelial growth factor receptor binding to one of its physiological ligands that contributes to the commitment of a venous endothelial cell to a lymphatic endothelial cell fate.
Synonyms: vascular endothelial growth factor receptor signalling pathway involved in lymphatic endothelial cell fate commitment
Comment: This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.
obsolete regulation of transcription involved in venous endothelial cell fate commitment (GO:0060852)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the commitment of a cell to a specific fate and contributes to a cell adopting a venous endothelial cell fate.
Comment: This term was obsoleted because it represents a GO-CAM model.
Notch signaling pathway involved in arterial endothelial cell fate commitment (GO:0060853)
Namespace: biological_process
Definition: The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell and contributing to the commitment of a cell to an arterial endothelial cell fate.
Synonyms: Notch signalling pathway involved in arterial endothelial cell fate commitment
branching involved in lymph vessel morphogenesis (GO:0060854)
Namespace: biological_process
Definition: The process of the coordinated growth and sprouting of lymph vessels giving rise to the organized lymphatic system.
Synonyms: patterning of lymph vessels
establishment of blood-brain barrier (GO:0060856)
Namespace: biological_process
Definition: Establishment of the barrier between the blood and the brain. The cells in the brain are packed tightly together preventing the passage of most molecules from the blood into the brain. Only lipid soluble molecules or those that are actively transported can pass through the blood-brain barrier.
Synonyms: establishment of BBB; establishment of blood/brain barrier
establishment of glial blood-brain barrier (GO:0060857)
Namespace: biological_process
Definition: Establishment of the glial barrier between the blood and the brain. The glial cells in the brain are packed tightly together preventing the passage of most molecules from the blood into the brain. Only lipid soluble molecules or those that are actively transported can pass through the blood-brain barrier.
Synonyms: establishment of glial BBB; establishment of glial blood/brain barrier
obsolete vesicle-mediated transport involved in floral organ abscission (GO:0060858)
Namespace: biological_process
Definition: OBSOLETE. The directed movement of substances within a cell by a cellular process that begins with the formation of membrane-bounded vesicles in which the transported substances are enclosed or located in the vesicle membrane which are then targeted to, and fuse with, an acceptor membrane contributing to the shedding of a floral organ.
Synonyms: membrane trafficking involved in floral organ shedding
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete regulation of vesicle-mediated transport involved in floral organ abscission (GO:0060859)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the rate, frequency, or extent of the directed movement of substances within a cell by a cellular process that begins with the formation of membrane-bounded vesicles in which the transported substances are enclosed or located in the vesicle membrane which are then targeted to, and fuse with, an acceptor membrane contributing to the shedding of a floral organ.
Comment: This term was obsoleted because it does not represent a specific pathway.
regulation of floral organ abscission (GO:0060860)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency, or extent of floral organ abscission, the controlled shedding of floral organs.
positive regulation of floral organ abscission (GO:0060861)
Namespace: biological_process
Definition: Any process that increases the rate, frequency, or extent of floral organ shedding, the controlled shedding of floral organs.
regulation of floral organ abscission by signal transduction (GO:0060863)
Namespace: biological_process
Definition: The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately modulating the rate, or extent of floral organ abscission.
obsolete positive regulation of floral organ abscission by small GTPase mediated signal transduction (GO:0060864)
Namespace: biological_process
Definition: OBSOLETE. Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals that increases the rate or extent of floral organ abscission.
Comment: This term was obsoleted because it does not represent a specific pathway.
obsolete negative regulation of floral organ abscission by transmembrane receptor protein serine/threonine kinase signaling pathway (GO:0060865)
Namespace: biological_process
Definition: OBSOLETE. The series of molecular signals generated as a consequence of a transmembrane receptor serine/threonine kinase binding to its physiological ligand and contributing to the decrease in the rate or frequency of floral organ abscission.
Synonyms: negative regulation of floral organ abscission by transmembrane receptor protein serine/threonine kinase signalling pathway
Comment: This term was obsoleted because it represents a GO-CAM model.
leaf abscission (GO:0060866)
Namespace: biological_process
Definition: The controlled shedding of a leaf.
fruit abscission (GO:0060867)
Namespace: biological_process
Definition: The controlled shedding of a fruit.
obsolete regulation of vesicle-mediated transport involved in floral organ abscission by small GTPase mediated signal transduction (GO:0060868)
Namespace: biological_process
Definition: OBSOLETE. Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals that modulates the rate or extent of floral organ abscission.
Comment: This term was obsoleted because it does not represent a specific pathway.
obsolete transmembrane receptor protein serine/threonine kinase signaling pathway involved in floral organ abscission (GO:0060869)
Namespace: biological_process
Definition: OBSOLETE. The series of molecular signals initiated by an extracellular ligand binding to a receptor on the surface of the target cell where the receptor possesses serine/threonine kinase activity, which contributes to the process of floral organ abscission.
Synonyms: transmembrane receptor protein serine/threonine kinase signalling pathway involved in floral organ abscission
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete cell wall disassembly involved in floral organ abscission (GO:0060870)
Namespace: biological_process
Definition: OBSOLETE. A cellular process that results in the breakdown of the cell wall that contributes to the process of floral organ abscission.
Comment: This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.
semicircular canal development (GO:0060872)
Namespace: biological_process
Definition: The progression of the semicircular canal from its initial formation to the mature structure.
posterior semicircular canal development (GO:0060874)
Namespace: biological_process
Definition: The progession of the posterior semicircular canal from its initial formation to the mature structure.
lateral semicircular canal development (GO:0060875)
Namespace: biological_process
Definition: The progession of the lateral semicircular canal from its initial formation to the mature structure.
semicircular canal formation (GO:0060876)
Namespace: biological_process
Definition: The developmental process pertaining to the initial formation of the semicircular canal from the otic vesicle. This process begins with the regionalization of the vesicle that specifies the area where the vesicles will form and continues through the process of fusion which forms the initial tubes.
obsolete regionalization involved in semicircular canal formation (GO:0060877)
Namespace: biological_process
Definition: OBSOLETE. The pattern specification process that results in the subdivision of the otic epithelium in space to define an area or volume in which cells will differentiate to give rise to the semicircular canals.
Comment: This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.
obsolete pouch outgrowth involved in semicircular canal formation (GO:0060878)
Namespace: biological_process
Definition: OBSOLETE. The morphogenetic process in which an epithelial sheet bends along a linear axis and gives rise to a pouch that will form a semicircular canal.
Comment: This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.
semicircular canal fusion (GO:0060879)
Namespace: biological_process
Definition: Creation of the central hole of the semicircular canal by sealing the edges of the pouch that forms during the process of semicircular canal formation.
obsolete cell morphogenesis involved in semicircular canal fusion (GO:0060880)
Namespace: biological_process
Definition: OBSOLETE. The change in form (cell shape and size) that occurs when a semicircular canal epithelial cell acquires the structural features that allow it to contribute to the process of semicircular canal fusion.
Comment: This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.
obsolete basement membrane disassembly involved in semicircular canal fusion (GO:0060882)
Namespace: biological_process
Definition: OBSOLETE. A process that results in the breakdown of the basement membrane that contributes to the process of semicircular canal fusion.
Synonyms: basal lamina disassembly involved in semicircular canal fusion
Comment: This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.
obsolete regulation of basement membrane disassembly involved in semicircular canal fusion by cell communication (GO:0060883)
Namespace: biological_process
Definition: OBSOLETE. Any process that mediates interactions between a cell and its surroundings that modulates of the rate, frequency or extent of basement membrane disassembly involved in semicircular canal fusion.
Synonyms: regulation of basal lamina disassembly involved in semicircular canal fusion by cell communication
Comment: This term was obsoleted because it represents a GO-CAM model.
clearance of cells from fusion plate (GO:0060884)
Namespace: biological_process
Definition: The morphogenetic process in which cells are removed from the inner loop of a semicircular canal.
clearance of cells from fusion plate by apoptotic process (GO:0060885)
Namespace: biological_process
Definition: Any apoptotic process that contributes to the shaping of the semicircular canal by removing cells in the fusion plate, forming the loops of the canals.
Synonyms: clearance of cells from fusion plate by apoptosis
clearance of cells from fusion plate by epithelial to mesenchymal transition (GO:0060886)
Namespace: biological_process
Definition: The process of epithelial to mesenchymal transition that contributes to the shaping of the semicircular canal by effectively removing epithelial cells from the fusion plate, forming the loops of the canals.
limb epidermis development (GO:0060887)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the epidermis of the limb over time, from its formation to the mature structure. The limb epidermis is the outer epithelial layer of the limb, it is a complex stratified squamous epithelium.
limb epidermis stratification (GO:0060888)
Namespace: biological_process
Definition: The pattern specification process that results in the subdivision of the epidermis of the limb in space to define a volume in which specific patterns of basal cell, spinous cell and granular cells will differentiate giving rise to the layers of the limb epidermis.
limb basal epidermal cell differentiation (GO:0060889)
Namespace: biological_process
Definition: The process in which a relatively unspecialized cell acquires specialized features of a limb epidermal basal cell. A epidermal basal cell cell is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into more specialized cell of the limb epidermis.