LiteFold/GO huggingface dataset:
aminoglycan biosynthetic process (GO:0006023)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of aminoglycans, any polymer containing amino groups that consists of more than about 10 monosaccharide residues joined to each other by glycosidic linkages.
Synonyms: aminoglycan anabolism; aminoglycan biosynthesis; aminoglycan formation; aminoglycan synthesis
glycosaminoglycan biosynthetic process (GO:0006024)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of glycosaminoglycans, any one of a group of linear polysaccharides composed of repeating disaccharide units.
Synonyms: glycosaminoglycan anabolism; glycosaminoglycan biosynthesis; glycosaminoglycan formation; glycosaminoglycan synthesis
obsolete galactosaminoglycan biosynthetic process (GO:0006025)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of galactosaminoglycans, any of a group of polysaccharides that contain amino sugars derived from the galactose.
Synonyms: galactosaminoglycan anabolism; galactosaminoglycan biosynthesis; galactosaminoglycan formation; galactosaminoglycan synthesis
Comment: This term was obsoleted because it was too broad.
aminoglycan catabolic process (GO:0006026)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of aminoglycans, any polymer containing amino groups that consists of more than about 10 monosaccharide residues joined to each other by glycosidic linkages.
Synonyms: aminoglycan breakdown; aminoglycan catabolism; aminoglycan degradation
glycosaminoglycan catabolic process (GO:0006027)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of glycosaminoglycans, any one of a group of linear polysaccharides composed of repeating disaccharide units.
Synonyms: glycosaminoglycan breakdown; glycosaminoglycan catabolism; glycosaminoglycan degradation
obsolete galactosaminoglycan catabolic process (GO:0006028)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the breakdown of galactosaminoglycans, any of a group of polysaccharides that contain amino sugars derived from the galactose.
Synonyms: galactosaminoglycan breakdown; galactosaminoglycan catabolism; galactosaminoglycan degradation
Comment: This term was obsoleted because it was too broad.
proteoglycan metabolic process (GO:0006029)
Namespace: biological_process
Definition: The chemical reactions and pathways involving proteoglycans, any glycoprotein in which the carbohydrate units are glycosaminoglycans.
Synonyms: proteoglycan metabolism; proteoglycan sulfate transfer
chitin biosynthetic process (GO:0006031)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues.
Synonyms: beta-1,4-linked N-acetylglucosamine biosynthesis; beta-1,4-linked N-acetylglucosamine biosynthetic process; chitin anabolism; chitin biosynthesis; chitin formation; chitin synthesis
chitin catabolic process (GO:0006032)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues.
Synonyms: beta-1,4-linked N-acetylglucosamine catabolic process; beta-1,4-linked N-acetylglucosamine catabolism; chitin breakdown; chitin catabolism; chitin degradation
obsolete cuticle chitin biosynthetic process (GO:0006035)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of cuticle chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues, found in cuticles.
Synonyms: cuticle chitin anabolism; cuticle chitin biosynthesis; cuticle chitin formation; cuticle chitin synthesis
Comment: The reason for obsoletion is that this^Cerm is mixing biological process and cellular component.
obsolete cuticle chitin catabolic process (GO:0006036)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the breakdown of cuticle chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues, found in cuticles.
Synonyms: cuticle chitin breakdown; cuticle chitin catabolism; cuticle chitin degradation
Comment: The reason for obsoletion is that this^Cerm is mixing biological process and cellular component.
obsolete cell wall chitin metabolic process (GO:0006037)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving cell wall chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues, found in the walls of cells.
Synonyms: cell wall chitin metabolism
Comment: The reason for obsoletion is that this^Cerm is mixing biological process and cellular component.
obsolete cell wall chitin biosynthetic process (GO:0006038)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of cell wall chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues, found in the walls of cells.
Synonyms: cell wall chitin anabolism; cell wall chitin biosynthesis; cell wall chitin formation; cell wall chitin synthesis
Comment: The reason for obsoletion is that this^Cerm is mixing biological process and cellular component.
obsolete cell wall chitin catabolic process (GO:0006039)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the breakdown of cell wall chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues, found in the walls of cells.
Synonyms: cell wall chitin breakdown; cell wall chitin catabolism; cell wall chitin degradation
Comment: The reason for obsoletion is that this^Cerm is mixing biological process and cellular component.
amino sugar metabolic process (GO:0006040)
Namespace: biological_process
Definition: The chemical reactions and pathways involving any amino sugar, sugars containing an amino group in place of a hydroxyl group.
Synonyms: amino sugar metabolism; aminosaccharide metabolic process; aminosaccharide metabolism
glucosamine metabolic process (GO:0006041)
Namespace: biological_process
Definition: The chemical reactions and pathways involving glucosamine (2-amino-2-deoxyglucopyranose), an aminodeoxysugar that occurs in combined form in chitin.
Synonyms: chitosamine metabolic process; chitosamine metabolism; glucosamine metabolism
glucosamine biosynthetic process (GO:0006042)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of glucosamine (2-amino-2-deoxyglucopyranose), an aminodeoxysugar that occurs in combined form in chitin.
Synonyms: chitosamine biosynthesis; chitosamine biosynthetic process; glucosamine anabolism; glucosamine biosynthesis; glucosamine formation; glucosamine synthesis
glucosamine catabolic process (GO:0006043)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of glucosamine (2-amino-2-deoxyglucopyranose), an aminodeoxysugar that occurs in combined form in chitin.
Synonyms: chitosamine catabolic process; chitosamine catabolism; glucosamine breakdown; glucosamine catabolism; glucosamine degradation
N-acetylglucosamine metabolic process (GO:0006044)
Namespace: biological_process
Definition: The chemical reactions and pathways involving N-acetylglucosamine. The D isomer is a common structural unit of glycoproteins in plants, bacteria and animals; it is often the terminal sugar of an oligosaccharide group of a glycoprotein.
Synonyms: N-acetylglucosamine metabolism
N-acetylglucosamine catabolic process (GO:0006046)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of N-acetylglucosamine. The D isomer is a common structural unit of glycoproteins in plants, bacteria and animals; it is often the terminal sugar of an oligosaccharide group of a glycoprotein.
Synonyms: N-acetylglucosamine breakdown; N-acetylglucosamine catabolism; N-acetylglucosamine degradation
UDP-N-acetylglucosamine metabolic process (GO:0006047)
Namespace: biological_process
Definition: The chemical reactions and pathways involving UDP-N-acetylglucosamine, a substance composed of N-acetylglucosamine, a common structural unit of oligosaccharides, in glycosidic linkage with uridine diphosphate.
Synonyms: UDP-N-acetylglucosamine metabolism
UDP-N-acetylglucosamine biosynthetic process (GO:0006048)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of UDP-N-acetylglucosamine, a substance composed of N-acetylglucosamine, a common structural unit of oligosaccharides, in glycosidic linkage with uridine diphosphate.
Synonyms: UDP-GlcNAc biosynthesis; UDP-GlcNAc biosynthetic process; UDP-N-acetylglucosamine anabolism; UDP-N-acetylglucosamine biosynthesis; UDP-N-acetylglucosamine formation; UDP-N-acetylglucosamine synthesis
obsolete UDP-N-acetylglucosamine catabolic process (GO:0006049)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the breakdown of UDP-N-acetylglucosamine, a substance composed of N-acetylglucosamine, a common structural unit of oligosaccharides, in glycosidic linkage with uridine diphosphate.
Synonyms: UDP-N-acetylglucosamine breakdown; UDP-N-acetylglucosamine catabolism; UDP-N-acetylglucosamine degradation
Comment: The reason for obsoletion is that this term is not clearly defined.
obsolete mannosamine metabolic process (GO:0006050)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving mannosomine, 2-amino-2-deoxymannose; the D-isomer is a constituent of neuraminic acids as well as mucolipids and mucoproteins.
Synonyms: mannosamine metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
N-acetylmannosamine metabolic process (GO:0006051)
Namespace: biological_process
Definition: The chemical reactions and pathways involving N-acetylmannosamine, the acetylated derivative of mannosamine, 2-amino-2-deoxymannose.
Synonyms: N-acetylmannosamine metabolism
N-acetylmannosamine biosynthetic process (GO:0006052)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of N-acetylmannosamine, the acetylated derivative of mannosamine, 2-amino-2-deoxymannose.
Synonyms: N-acetylmannosamine anabolism; N-acetylmannosamine biosynthesis; N-acetylmannosamine formation; N-acetylmannosamine synthesis
N-acetylmannosamine catabolic process (GO:0006053)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of N-acetylmannosamine, the acetylated derivative of mannosamine, 2-amino-2-deoxymannose.
Synonyms: N-acetylmannosamine breakdown; N-acetylmannosamine catabolism; N-acetylmannosamine degradation
N-acetylneuraminate metabolic process (GO:0006054)
Namespace: biological_process
Definition: The chemical reactions and pathways involving N-acetylneuraminate, the anion of 5-(acetylamino)-3,5-dideoxy-D-glycero-D-galacto-non-3-ulosonic acid.
Synonyms: N-acetylneuraminate metabolism; sialic acid metabolic process; sialic acid metabolism
CMP-N-acetylneuraminate biosynthetic process (GO:0006055)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of CMP-N-acetylneuraminate, a substance composed of 5-(acetylamino)-3,5-dideoxy-D-glycero-D-galacto-non-3-ulosonic acid in glycosidic linkage with cytidine monophosphate.
Synonyms: CMP-N-acetylneuraminate anabolism; CMP-N-acetylneuraminate biosynthesis; CMP-N-acetylneuraminate formation; CMP-N-acetylneuraminate synthesis
obsolete mannoprotein metabolic process (GO:0006056)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving a mannoprotein, a protein that contains covalently bound mannose residues.
Synonyms: mannoprotein metabolism
Comment: This term was obsoleted because it represents an unnecessary grouping term.
obsolete mannoprotein biosynthetic process (GO:0006057)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of a mannoprotein, a protein that contains covalently bound mannose residues.
Synonyms: mannoprotein anabolism; mannoprotein biosynthesis; mannoprotein formation; mannoprotein synthesis
Comment: This term was obsoleted because it represents the same process as protein O-linked mannosylation ; GO:0035269.
obsolete mannoprotein catabolic process (GO:0006058)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the breakdown of a mannoprotein, a protein that contains covalently bound mannose residues.
Synonyms: mannoprotein breakdown; mannoprotein catabolism; mannoprotein degradation
Comment: This term was obsoleted because there is no evidence that there is a specific pathway for degragation of mannosylated proteins.
hexitol metabolic process (GO:0006059)
Namespace: biological_process
Definition: The chemical reactions and pathways involving hexitols, any alditol with a chain of six carbon atoms in the molecule.
Synonyms: hexitol metabolism; sugar alcohol (hexitol) metabolic process; sugar alcohol (hexitol) metabolism
D-sorbitol metabolic process (GO:0006060)
Namespace: biological_process
Definition: The chemical reactions and pathways involving sorbitol (D-glucitol), one of the ten stereoisomeric hexitols. It can be derived from glucose by reduction of the aldehyde group.
Synonyms: sorbitol metabolism
D-sorbitol biosynthetic process (GO:0006061)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of sorbitol (D-glucitol), one of the ten stereoisomeric hexitols. It can be derived from glucose by reduction of the aldehyde group.
Synonyms: sorbitol anabolism; sorbitol biosynthesis; sorbitol formation; sorbitol synthesis
D-sorbitol catabolic process (GO:0006062)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of sorbitol (D-glucitol), one of the ten stereoisomeric hexitols. It can be derived from glucose by reduction of the aldehyde group.
Synonyms: sorbitol breakdown; sorbitol catabolism; sorbitol degradation
obsolete uronic acid metabolic process (GO:0006063)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving uronic acid, any monocarboxylic acid formally derived by oxidizing to a carboxyl group the terminal hydroxymethylene group of either an aldose with four or more carbon atoms in the molecule, or of any glycoside derived from such an aldose.
Synonyms: uronic acid metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
glucuronate catabolic process (GO:0006064)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of glucuronate, any salt or ester of glucuronic acid.
Synonyms: glucuronate breakdown; glucuronate catabolism; glucuronate degradation
UDP-glucuronate biosynthetic process (GO:0006065)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of UDP-glucuronate, a substance composed of glucuronic acid in glycosidic linkage with uridine diphosphate.
Synonyms: UDP-glucuronate anabolism; UDP-glucuronate biosynthesis; UDP-glucuronate formation; UDP-glucuronate synthesis
alcohol metabolic process (GO:0006066)
Namespace: biological_process
Definition: The chemical reactions and pathways involving alcohols, any of a class of compounds containing one or more hydroxyl groups attached to a saturated carbon atom.
Synonyms: alcohol metabolism
ethanol metabolic process (GO:0006067)
Namespace: biological_process
Definition: The chemical reactions and pathways involving ethanol, CH3-CH2-OH, a colorless, water-miscible, flammable liquid produced by alcoholic fermentation.
Synonyms: ethanol metabolism
octanol metabolic process (GO:0006070)
Namespace: biological_process
Definition: The chemical reactions and pathways involving octanol, the 8-carbon alcohol with the formula C8H17OH.
Synonyms: octanol metabolism
glycerol metabolic process (GO:0006071)
Namespace: biological_process
Definition: The chemical reactions and pathways involving glycerol, 1,2,3-propanetriol, a sweet, hygroscopic, viscous liquid, widely distributed in nature as a constituent of many lipids.
Synonyms: glycerol metabolism
glycerol-3-phosphate metabolic process (GO:0006072)
Namespace: biological_process
Definition: The chemical reactions and pathways involving glycerol-3-phosphate, a phosphoric monoester of glycerol.
Synonyms: glycerol-3-phosphate metabolism
obsolete cellular glucan metabolic process (GO:0006073)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving glucans, polysaccharides consisting only of glucose residues, occurring at the level of an individual cell.
Synonyms: cellular glucan metabolism
Comment: This term was obsoleted because it is not different from its parent, glucan metabolic process ; GO:0044042.
(1->3)-beta-D-glucan metabolic process (GO:0006074)
Namespace: biological_process
Definition: The chemical reactions and pathways involving (1->3)-beta-D-glucans, compounds composed of glucose residues linked by (1->3)-beta-D-glucosidic bonds.
Synonyms: 1,3-beta-D-glucan metabolic process; 1,3-beta-D-glucan metabolism; 1,3-beta-glucan metabolic process; beta-1,3 glucan metabolic process; beta-1,3 glucan metabolism
(1->3)-beta-D-glucan biosynthetic process (GO:0006075)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of (1->3)-beta-D-glucans, compounds composed of glucose residues linked by (1->3)-beta-D-glucosidic bonds.
Synonyms: 1,3-beta-D-glucan biosynthetic process; 1,3-beta-glucan anabolism; 1,3-beta-glucan biosynthesis; 1,3-beta-glucan formation; 1,3-beta-glucan synthesis; beta-1,3 glucan anabolism; beta-1,3 glucan biosynthesis; beta-1,3 glucan biosynthetic process; beta-1,3 glucan formation; beta-1,3 glucan synthesis
(1->3)-beta-D-glucan catabolic process (GO:0006076)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of (1->3)-beta-D-glucans.
Synonyms: 1,3-beta-D-glucan catabolic process; 1,3-beta-glucan breakdown; 1,3-beta-glucan catabolism; 1,3-beta-glucan degradation; beta-1,3 glucan breakdown; beta-1,3 glucan catabolic process; beta-1,3 glucan catabolism; beta-1,3 glucan degradation
(1->6)-beta-D-glucan metabolic process (GO:0006077)
Namespace: biological_process
Definition: The chemical reactions and pathways involving (1->6)-beta-D-glucans, compounds composed of glucose residues linked by (1->6)-beta-D-glucosidic bonds.
Synonyms: 1,6-beta-glucan metabolic process; 1,6-beta-glucan metabolism; beta-1,6 glucan metabolic process; beta-1,6 glucan metabolism
(1->6)-beta-D-glucan biosynthetic process (GO:0006078)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of (1->6)-beta-D-glucans.
Synonyms: 1,6-beta-glucan anabolism; 1,6-beta-glucan biosynthesis; 1,6-beta-glucan biosynthetic process; 1,6-beta-glucan formation; 1,6-beta-glucan synthesis; beta-1,6 glucan anabolism; beta-1,6 glucan biosynthesis; beta-1,6 glucan biosynthetic process; beta-1,6 glucan formation; beta-1,6 glucan synthesis
(1->6)-beta-D-glucan catabolic process (GO:0006079)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of (1->6)-beta-D-glucans.
Synonyms: 1,6-beta-D-glucan breakdown; 1,6-beta-D-glucan catabolic process; 1,6-beta-D-glucan catabolism; 1,6-beta-D-glucan degradation; beta-1,6 glucan breakdown; beta-1,6 glucan catabolic process; beta-1,6 glucan catabolism; beta-1,6 glucan degradation
substituted mannan metabolic process (GO:0006080)
Namespace: biological_process
Definition: The chemical reactions and pathways involving a mannan backbone composed of D-mannose unites, substituted with D-glucose and/or D-galactose units.
Synonyms: substituted mannan metabolism
aldehyde metabolic process (GO:0006081)
Namespace: biological_process
Definition: The chemical reactions and pathways involving aldehydes, any organic compound with the formula R-CH=O, as carried out by individual cells.
Synonyms: aldehyde metabolism; alkanal metabolic process; alkanal metabolism
organic acid metabolic process (GO:0006082)
Namespace: biological_process
Definition: The chemical reactions and pathways involving organic acids, any acidic compound containing carbon in covalent linkage.
Synonyms: organic acid metabolism
acetate metabolic process (GO:0006083)
Namespace: biological_process
Definition: The chemical reactions and pathways involving acetate, the anion of acetic acid.
Synonyms: acetate metabolism
acetyl-CoA metabolic process (GO:0006084)
Namespace: biological_process
Definition: The chemical reactions and pathways involving acetyl-CoA, a derivative of coenzyme A in which the sulfhydryl group is acetylated; it is a metabolite derived from several pathways (e.g. glycolysis, fatty acid oxidation, amino-acid catabolism) and is further metabolized by the tricarboxylic acid cycle. It is a key intermediate in lipid and terpenoid biosynthesis.
Synonyms: acetyl coenzyme A metabolic process; acetyl coenzyme A metabolism; acetyl-CoA metabolism
acetyl-CoA biosynthetic process (GO:0006085)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of acetyl-CoA, a derivative of coenzyme A in which the sulfhydryl group is acetylated.
Synonyms: acetyl-CoA anabolism; acetyl-CoA biosynthesis; acetyl-CoA formation; acetyl-CoA synthesis
pyruvate decarboxylation to acetyl-CoA (GO:0006086)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of acetyl-CoA from pyruvate.  In most organisms, this pathway links glycolysis to the TCA cycle, by a series of three reactions carried out by a multisubunit complex called the 'pyruvate dehydrogenase complex', even though pyruvate dehydrogenase activity describes only one of those reactions. The combination of the three reactions can be summarized as: pyruvate + coenzyme A + NAD+ -> acetyl-CoA + CO2 + NADH.
Synonyms: acetyl-CoA anabolism from pyruvate; acetyl-CoA biosynthetic process from pyruvate; acetyl-CoA formation from pyruvate; acetyl-CoA synthesis from pyruvate; oxidative decarboxylation of pyruvate; pyruvate decarboxylation; pyruvate dehydrogenase pathway
obsolete acetate to acetyl-CoA (GO:0006088)
Namespace: biological_process
Definition: OBSOLETE. (Was not defined before being made obsolete).
Synonyms: acetate to acetyl-CoA
Comment: This term was made obsolete because it represents a function rather than a process.
lactate metabolic process (GO:0006089)
Namespace: biological_process
Definition: The chemical reactions and pathways involving lactate, the anion of lactic acid.
Synonyms: 2-hydroxypropanoate metabolic process; 2-hydroxypropanoate metabolism; alpha-hydroxypropionate metabolic process; alpha-hydroxypropionate metabolism; lactate metabolism
pyruvate metabolic process (GO:0006090)
Namespace: biological_process
Definition: The chemical reactions and pathways involving pyruvate, 2-oxopropanoate.
Synonyms: pyruvate dehydrogenase bypass; pyruvate metabolism
generation of precursor metabolites and energy (GO:0006091)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of precursor metabolites, substances from which energy is derived, and any process involved in the liberation of energy from these substances.
Synonyms: energy pathways; intermediary metabolism; metabolic energy generation
gluconeogenesis (GO:0006094)
Namespace: biological_process
Definition: The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol.
Synonyms: glucose biosynthesis; glucose biosynthetic process