LiteFold/GO huggingface dataset:
obsolete regulation of ornithine metabolic process (GO:0090368)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the rate, frequency, or extent of the chemical reactions and pathways involving ornithine, an amino acid only rarely found in proteins, but which is important in living organisms as an intermediate in the reactions of the urea cycle and in arginine biosynthesis.
Comment: The reason for obsoletion is that this term was an unnecessary grouping terms and only 'biosynthetic' or 'catabolic' process should be used.
ornithine carbamoyltransferase inhibitor activity (GO:0090369)
Namespace: molecular_function
Definition: Binds to and stops, prevents, or reduces the activity of ornithine carbamoyltransferase.
negative regulation of cholesterol efflux (GO:0090370)
Namespace: biological_process
Definition: Any process that decreases the frequency, rate or extent of cholesterol efflux. Cholesterol efflux is the directed movement of cholesterol, cholest-5-en-3-beta-ol, out of a cell or organelle.
positive regulation of glycerol transport (GO:0090372)
Namespace: biological_process
Definition: Any process that increases the rate, frequency, or extent of the directed movement of glycerol into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
negative regulation of glycerol transport (GO:0090373)
Namespace: biological_process
Definition: Any process that decreases the rate, frequency, or extent of the directed movement of glycerol into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
oligopeptide export from mitochondrion (GO:0090374)
Namespace: biological_process
Definition: The process in which an oligopeptide is transported out of the mitochondrial matrix. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages.
obsolete negative regulation of transcription from RNA polymerase II promoter in response to iron ion starvation (GO:0090375)
Namespace: biological_process
Definition: OBSOLETE. Any process that decreases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of deprivation of iron ions.
Synonyms: negative regulation of transcription from RNA polymerase II promoter in response to iron deficiency
Comment: This term was obsoleted because it represents a GO-CAM model.
seed trichome differentiation (GO:0090376)
Namespace: biological_process
Definition: The process in which a relatively unspecialized epidermal cell acquires the specialized features of a seed trichome. A seed trichome is a trichome that develops from seed coat epidermis and is often long with putative dispersal function.
Synonyms: cotton fiber development; seed hair differentiation; seed trichome development
seed trichome elongation (GO:0090378)
Namespace: biological_process
Definition: The process in which a seed trichome irreversibly increases in size in one [spatial] dimension or along one axis, resulting in the morphogenesis of the cell.
Comment: The increase in length of the seed trichome without cell division. Elongation is defined to be from 5 to 20 DPA in Gossypium spp.
secondary cell wall biogenesis involved in seed trichome differentiation (GO:0090379)
Namespace: biological_process
Definition: A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of inextensible cellulose- and pectin-containing cell walls that are formed between the plasma membrane and primary cell wall of seed trichomes after cell expansion is complete.
Synonyms: secondary cell wall biosynthesis involved in seed trichome differentiation; seed trichome secondary wall biosynthesis
Comment: The processes involved in the massive amount of secondary wall cellulose synthesis in seed trichomes continue to 30 DPA in Gossypium spp.
regulation of heart induction (GO:0090381)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency, or extent of heart induction. Heart induction is the close range interaction between mesoderm and endoderm or ectoderm that causes cells to change their fates and specify the development of the heart.
phagosome maturation (GO:0090382)
Namespace: biological_process
Definition: A process that is carried out at the cellular level which results in the arrangement of constituent parts of a phagosome within a cell. Phagosome maturation begins with endocytosis and formation of the early phagosome and ends with the formation of the hybrid organelle, the phagolysosome.
phagosome acidification (GO:0090383)
Namespace: biological_process
Definition: Any process that reduces the pH of the phagosome, corresponding to an increase in hydrogen ion concentration.
Synonyms: phagosomal acidification
phagosome-lysosome docking (GO:0090384)
Namespace: biological_process
Definition: The initial attachment of a phagosome membrane to a lysosome membrane. Docking requires only that the proteins come close enough to interact and adhere.
Synonyms: lysosome recruitment to phagosome
phagosome-lysosome fusion (GO:0090385)
Namespace: biological_process
Definition: The creation of a phagolysosome from a phagosome and a lysosome.
phagosome maturation involved in apoptotic cell clearance (GO:0090386)
Namespace: biological_process
Definition: A process that is carried out at the cellular level which results in the arrangement of constituent parts of a phagosome within a cell and contributes to apoptotic cell clearance. Phagosome maturation begins with endocytosis and formation of the early phagosome and ends with the formation of the hybrid organelle, the phagolysosome.
phagolysosome assembly involved in apoptotic cell clearance (GO:0090387)
Namespace: biological_process
Definition: The process in which a phagosome, a vesicle formed by phagocytosis, fuses with a lysosome as a part of apoptotic cell clearance.
obsolete phagosome-lysosome docking involved in apoptotic cell clearance (GO:0090388)
Namespace: biological_process
Definition: OBSOLETE. The initial attachment of a phagosome membrane to a lysosome membrane that occurs as a part of apoptotic cell clearance. Docking requires only that the proteins come close enough to interact and adhere.
Comment: This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.
phagosome-lysosome fusion involved in apoptotic cell clearance (GO:0090389)
Namespace: biological_process
Definition: The creation of a phagolysosome from a phagosome and a lysosome as a part of apoptotic cell clearance.
phagosome acidification involved in apoptotic cell clearance (GO:0090390)
Namespace: biological_process
Definition: Any process that reduces the pH of the phagosome, corresponding to an increase in hydrogen ion concentration, and occurs as a part of apoptotic cell clearance.
granum assembly (GO:0090391)
Namespace: biological_process
Definition: A process that is carried out at the cellular level which results in the assembly of a granum. A granum is a distinct stack of lamellae seen within chloroplasts.
Synonyms: grana formation
sepal giant cell differentiation (GO:0090392)
Namespace: biological_process
Definition: The process in which a relatively unspecialized cell acquires specialized features of a sepal giant cell. A sepal giant cell is a pavement cell that is part of the sepal epidermis and stretches one fifth the length of the sepal with a chromosome content of 16C.
sepal giant cell development (GO:0090393)
Namespace: biological_process
Definition: The process aimed at the progression of a sepal giant cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell.
Synonyms: sepal giant cell formation
negative regulation of excitatory postsynaptic potential (GO:0090394)
Namespace: biological_process
Definition: Any process that prevents the establishment or decreases the extent of the excitatory postsynaptic potential (EPSP) which is a temporary increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential.
Synonyms: negative regulation of EPSP; negative regulation of excitatory post-synaptic membrane potential; reduction of excitatory postsynaptic membrane potential
stigma papilla (GO:0090397)
Namespace: cellular_component
Definition: A plant cell papilla that is part of a stigma papilla cell.
Comment: Part of stigma papilla cell (PO:0025168).
cellular senescence (GO:0090398)
Namespace: biological_process
Definition: A cell aging process stimulated in response to cellular stress, whereby normal cells lose the ability to divide through irreversible cell cycle arrest.
replicative senescence (GO:0090399)
Namespace: biological_process
Definition: The process by which normal somatic cells reach an irreversible stage of cell cycle arrest following multiple rounds of replication; this end stage is associated with marked changes in gene expression and function. This is a natural barrier to unlimited proliferation of somatic cells, and is believed to be contolled by telomere shortening.
stress-induced premature senescence (GO:0090400)
Namespace: biological_process
Definition: A cellular senescence process associated with the dismantling of a cell as a response to environmental factors such as hydrogen peroxide or X-rays.
Synonyms: SIPS
obsolete viral-induced premature senescence (GO:0090401)
Namespace: biological_process
Definition: OBSOLETE. A cellular senescence process associated with the dismantling of a cell as a response to viral infection.
Comment: The reason for obsoletion is was not clearly defined. There is nothing in the literature that mentions this process; there are papers that mention viral proteins overcoming premature senescence, for example, PMID:22326283.
oncogene-induced cell senescence (GO:0090402)
Namespace: biological_process
Definition: A cellular senescence process associated with the dismantling of a cell as a response to oncogenic stress, such as the activation of the Ras oncogenic family.
Synonyms: OIS
oxidative stress-induced premature senescence (GO:0090403)
Namespace: biological_process
Definition: A cellular senescence process associated with the dismantling of a cell as a response to oxidative stress, e.g. high levels of reactive oxygen species, such as superoxide anions, hydrogen peroxide, and hydroxyl radicals.
pollen tube tip (GO:0090404)
Namespace: cellular_component
Definition: The region at growing end of the pollen tube cell, where polarized growth occurs.
unicellular trichome branch (GO:0090405)
Namespace: cellular_component
Definition: A cell projection part that is a branch of a unicellular trichome.
Comment: Unicellular trichome (PO:0025537) is a trichome(PO:0000282) that is a single plant cell (PO:0009002). For a cell that forms a branch of a multicellular trichome, see multicellular trichome branch cell (PO:0025163).
pollen tube (GO:0090406)
Namespace: cellular_component
Definition: A tubular cell projection that is part of a pollen tube cell and extends from a pollen grain.
Comment: Carries the male gametes to into or near the ovule. May be branched in gymnosperms. This term replaces the obsolete term PO:0006345. Part of pollen tube cell (PO:0025195).
organophosphate biosynthetic process (GO:0090407)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the biosynthesis of deoxyribose phosphate, the phosphorylated sugar 2-deoxy-erythro-pentose.
phloem nitrate loading (GO:0090408)
Namespace: biological_process
Definition: The process of loading nitrate into the sieve tube or companion cell of the phloem for long distance transport from source to sink.
malonyl-CoA synthetase activity (GO:0090409)
Namespace: molecular_function
Definition: Catalysis of the reaction: malonate + ATP + coenzyme A = malonyl-CoA + AMP + diphosphate.
malonate catabolic process (GO:0090410)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of malonate, the propanedioate ion.
brassinosteroid binding (GO:0090411)
Namespace: molecular_function
Definition: Binding to a brassinosteroid.
obsolete positive regulation of transcription from RNA polymerase II promoter involved in fatty acid biosynthetic process (GO:0090412)
Namespace: biological_process
Definition: OBSOLETE. Any positive regulation of transcription from RNA polymerase II promoter that is involved in fatty acid biosynthetic process.
Synonyms: positive regulation of transcription from RNA polymerase II promoter involved in fatty acid biosynthetic process
obsolete negative regulation of transcription from RNA polymerase II promoter involved in fatty acid biosynthetic process (GO:0090413)
Namespace: biological_process
Definition: OBSOLETE. Any negative regulation of transcription from RNA polymerase II promoter that is involved in fatty acid biosynthetic process.
Synonyms: negative regulation of transcription from RNA polymerase II promoter involved in fatty acid biosynthetic process
molybdate ion export from vacuole (GO:0090414)
Namespace: biological_process
Definition: The directed movement of molybdate ions out of the vacuole.
7-hydroxymethyl chlorophyll a reductase activity (GO:0090415)
Namespace: molecular_function
Definition: Catalysis of the reaction: 7-hydroxymethyl chlorophyll a + 2 reduced ferredoxin + 2 H+ chlorophyll a + 2 oxidized ferredoxin + H2O.
N-methylnicotinate transmembrane transporter activity (GO:0090417)
Namespace: molecular_function
Definition: Enables the transfer of N-methylnicotinate from one side of a membrane to the other.
Synonyms: N-methylnicotinate transporter activity
obsolete positive regulation of transcription involved in S-phase of mitotic cell cycle (GO:0090418)
Namespace: biological_process
Definition: OBSOLETE. Any process that activates or increases the frequency, rate or extent of transcription of target genes that are transcribed as part of the S phase of the mitotic cell cycle.
Synonyms: activation of S phase specific transcription in the mitotic cell cycle; activation of transcription from RNA polymerase II promoter during S phase of the mitotic cell cycle; activation of transcription involved in S phase of mitotic cell cycle; positive regulation of S phase specific transcription in the mitotic cell cycle; positive regulation of transcription from RNA polymerase II promoter during S phase of the mitotic cell cycle; positive regulation of transcription involved in S-phase of mitotic cell cycle; up-regulation of S phase specific transcription in the mitotic cell cycle; up-regulation of transcription from RNA polymerase II promoter during S phase of the mitotic cell cycle; up-regulation of transcription involved in S phase of mitotic cell cycle
Comment: This term was made obsolete because it is unclear exactly what it means. It could mean either 'regulation of transcription during phase X' or 'regulation of transition between phase X and phase Y'.
obsolete negative regulation of transcription involved in G2/M transition of mitotic cell cycle (GO:0090419)
Namespace: biological_process
Definition: OBSOLETE. Any process that inhibits or decreases the frequency, rate or extent of transcription of target genes that are transcribed as part of the G2/M transition of the mitotic cell cycle.
Synonyms: down-regulation of transcription from RNA polymerase II promoter during the G2/M transition of the mitotic cell cycle; negative regulation of transcription from RNA polymerase II promoter during G2/M transition of the mitotic cell cycle
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete naphthalene-containing compound metabolic process (GO:0090420)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving naphthalene-containing compounds.
Comment: This term was obsoleted because it is a unnecessary grouping class.
embryonic meristem initiation (GO:0090421)
Namespace: biological_process
Definition: Initiation of a region of tissue in a plant embryo that is composed of one or more undifferentiated cells capable of undergoing mitosis and differentiation.
thiamine pyrophosphate transmembrane transporter activity (GO:0090422)
Namespace: molecular_function
Definition: Enables the transfer of thiamine pyrophosphate a substance from one side of a membrane to the other.
Synonyms: thiamine diphosphate transporter activity; thiamine pyrophosphate transporter activity
phytochelatin-metal complex formation (GO:0090423)
Namespace: biological_process
Definition: A phytochelatin metabolic process in which a metal is incorporated with phytochelatin to form a complex.
Synonyms: low molecular weight phytochelatin complex formation; LWM phytochelatin complex formation
phytochelatin-metal-sulfur complex formation (GO:0090424)
Namespace: biological_process
Definition: A phytochelatin metabolic process in which a metal and exogenous sulfur are incorporated with phytochelatin to form a complex.
Synonyms: high molecular weight phytochelatin complex formation; HWM phytochelatin complex formation
acinar cell differentiation (GO:0090425)
Namespace: biological_process
Definition: The epithelial cell differentiation process in which a relatively unspecialized cell acquires specialized features of an acinar cell, a secretory cell that is grouped together with other cells of the same type to form grape-shaped clusters known as acini.
actin filament bundle convergence (GO:0090426)
Namespace: biological_process
Definition: A process of actin filament bundle distribution that results in the compaction of actin filaments.
activation of meiosis (GO:0090427)
Namespace: biological_process
Definition: Any process that starts the inactive process of meiosis.
perianth development (GO:0090428)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the perianth over time, from its formation to the mature structure. The perianth is a collective phyllome structure composed of two or more petals, sepals, or tepals.
obsolete detection of endogenous biotic stimulus (GO:0090429)
Namespace: biological_process
Definition: OBSOLETE. The series of events in which an endogenous biotic stimulus is received by a cell and converted into a molecular signal.
Comment: This term was obsoleted because it is an unnecessary grouing term.
caffeoyl-CoA: alcohol caffeoyl transferase activity (GO:0090430)
Namespace: molecular_function
Definition: Catalysis of the reaction: caffeoyl-CoA + a saturated primary alcohol = an alkyl caffeate + CoA.
alkyl caffeate ester biosynthetic process (GO:0090431)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of ester derivatives of alkyl caffeate.
Synonyms: alkyl caffeate ester anabolism; alkyl caffeate ester biosynthesis; alkyl caffeate ester formation; alkyl caffeate ester synthesis
myristoyl-CoA ligase activity (GO:0090432)
Namespace: molecular_function
Definition: Catalysis of the reaction: ATP + myristic acid + CoA = AMP + diphosphate + myristoyl-CoA.
Synonyms: myristoyl-CoA synthetase activity
palmitoyl-CoA ligase activity (GO:0090433)
Namespace: molecular_function
Definition: Catalysis of the reaction: ATP + palmitic acid + CoA = AMP + diphosphate + palmitoyl-CoA.
Synonyms: palmitoyl-CoA synthetase activity
oleoyl-CoA ligase activity (GO:0090434)
Namespace: molecular_function
Definition: Catalysis of the reaction: ATP + oleic acid + CoA = AMP + diphosphate + oleoyl-CoA.
Synonyms: oleoyl-CoA synthetase activity
protein localization to nuclear envelope (GO:0090435)
Namespace: biological_process
Definition: A process in which a protein is transported to, or maintained at, a location within a nuclear envelope.
Synonyms: protein localization in nuclear envelope
leaf pavement cell development (GO:0090436)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of an leaf pavement cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a leaf pavement cell fate.
socket cell differentiation (GO:0090437)
Namespace: biological_process
Definition: The process in which a relatively unspecialized cell acquires specialized features of a socket cell, a shoot epidermal cell that surrounds a trichome and provides its support.
camelliol C synthase activity (GO:0090438)
Namespace: molecular_function
Definition: Catalyzes the reaction: (S)-2,3-epoxysqualene = camelliol C.
Synonyms: (3S)-2,3-epoxy-2,3-dihydrosqualene mutase (cyclizing, camelliol-C-forming)
tetraketide alpha-pyrone synthase activity (GO:0090439)
Namespace: molecular_function
Definition: Catalyzes the reaction: 7-hydroxylauroyl-CoA + 3 malonyl-CoA + 2 H+ = 2-(8-hydroxy-2-oxotridecyl)-6-oxopyran-4-olate + 3 CO2 + 4 coenzyme A.
abscisic acid transmembrane transporter activity (GO:0090440)
Namespace: molecular_function
Definition: Enables the transfer of abscisic acid from one side of a membrane to the other.
Synonyms: abscisic acid transporter activity
obsolete trehalose biosynthesis in response to heat stress (GO:0090441)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of trehalose that occur as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism.
Synonyms: trehalose biosynthetic process in response to heat stress
Comment: The reason for obsoletion is that this term is pre-composed and should be represented as a GO-CAM model.
obsolete trehalose catabolism in response to heat stress (GO:0090442)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the degradation of trehalose that occur as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism.
Synonyms: trehalose catabolic process in response to heat stress
Comment: The reason for obsoletion is that this term is pre-composed and should be represented as a GO-CAM model.
FAR/SIN/STRIPAK complex (GO:0090443)
Namespace: cellular_component
Definition: A conserved protein phosphatase type 2A complex which contains a protein phosphatase type 2A, a protein phosphatase regulatory subunit, a striatin, an FHA domain protein and other subunits (at least six proteins). In fission yeast this complex negatively regulate the septation initiation network at the spindle pole body.
Synonyms: FAR complex; SIN inhibitory phosphatase (SIP) complex; SIN inhibitory phosphatase complex; SIP complex; striatin interacting phosphatase and kinase complex; STRIPAK signalling complex
regulation of nematode larval development, heterochronic (GO:0090444)
Namespace: biological_process
Definition: Any process that modulates the consistent predetermined time point at which a nematode larva progresses from an initial condition to a later condition and the rate at which this time point is reached.
positive regulation of nematode larval development, heterochronic (GO:0090445)
Namespace: biological_process
Definition: Any process that modulates the consistent predetermined time point at which a nematode larva progresses from an initial condition to a later condition and increases the rate at which this time point is reached.
negative regulation of nematode larval development, heterochronic (GO:0090446)
Namespace: biological_process
Definition: Any process that modulates the consistent predetermined time point at which a nematode larva progresses from an initial condition to a later condition and decreases the rate at which this time point is reached.
glycerol-3-phosphate 2-O-acyltransferase activity (GO:0090447)
Namespace: molecular_function
Definition: Catalysis of the reaction: an acyl-CoA + sn-glycerol 3-phosphate = CoA + a 2-acyl-sn-glycerol 3-phosphate.
glucosinolate:proton symporter activity (GO:0090448)
Namespace: molecular_function
Definition: Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: glucosinolate(out) + H+(out) = glucosinolate(in) + H+(in).
Synonyms: glucosinolate:hydrogen symporter activity