LiteFold/GO huggingface dataset:
cellular response to absence of light (GO:0071485)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an absence of light stimuli.
Synonyms: cellular response to darkness
cellular response to high light intensity (GO:0071486)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a high light intensity stimulus.
cellular response to low light intensity stimulus (GO:0071487)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a low light intensity stimulus. Low light intensity is defined as a level of electromagnetic radiation at or below 0.1 micromols/m2.
cellular response to very low light intensity stimulus (GO:0071488)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a very low light intensity stimulus. A very low light intensity stimulus is defined as a level of electromagnetic radiation below 0.001 mmol/m2/sec.
cellular response to red or far red light (GO:0071489)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a red or far red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs.
cellular response to far red light (GO:0071490)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of far red light stimulus. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs.
Synonyms: cellular response to far red light stimulus
cellular response to red light (GO:0071491)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs.
Synonyms: cellular response to red light stimulus
cellular response to UV-A (GO:0071492)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-A radiation stimulus. UV-A radiation (UV-A light) spans the wavelengths 315 to 400 nm.
Synonyms: cellular response to UV-A light stimulus; cellular response to UV-A radiation stimulus; cellular response to UVA light stimulus; cellular response to UVA radiation stimulus
cellular response to UV-B (GO:0071493)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-B radiation stimulus. UV-B radiation (UV-B light) spans the wavelengths 280 to 315 nm.
Synonyms: cellular response to medium wave ultraviolet light stimulus; cellular response to medium wave ultraviolet radiation stimulus; cellular response to UV-B light stimulus; cellular response to UV-B radiation stimulus; cellular response to UVB light stimulus; cellular response to UVB radiation stimulus
cellular response to UV-C (GO:0071494)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-C radiation stimulus. UV-C radiation (UV-C light) spans the wavelengths 100 to 280 nm.
Synonyms: cellular response to germicidal ultraviolet light stimulus; cellular response to germicidal ultraviolet radiation stimulus; cellular response to shortwave ultraviolet light stimulus; cellular response to shortwave ultraviolet radiation stimulus; cellular response to UV-C light stimulus; cellular response to UV-C radiation stimulus; cellular response to UVC light stimulus; cellular response to UVC radiation stimulus
cellular response to endogenous stimulus (GO:0071495)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus arising within the organism.
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
cellular response to external stimulus (GO:0071496)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an external stimulus.
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
cellular response to fluid shear stress (GO:0071498)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fluid shear stress stimulus. Fluid shear stress is the force acting on an object in a system where the fluid is moving across a solid surface.
cellular response to laminar fluid shear stress (GO:0071499)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a laminar fluid shear stress stimulus. Laminar fluid flow is the force acting on an object in a system where the fluid is moving across a solid surface in parallel layers.
cellular response to nitrosative stress (GO:0071500)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrosative stress stimulus. Nitrosative stress is a state often resulting from exposure to high levels of nitric oxide (NO) or the highly reactive oxidant peroxynitrite, which is produced following interaction of NO with superoxide anions.
cellular response to sterol depletion (GO:0071501)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating deprivation of sterols. Sterols are a group of steroids characterized by the presence of one or more hydroxyl groups and a hydrocarbon side-chain in the molecule.
Synonyms: cellular sterol depletion response
cellular response to temperature stimulus (GO:0071502)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a temperature stimulus.
Synonyms: cellular response to thermal stimulus
response to heparin (GO:0071503)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heparin stimulus.
cellular response to heparin (GO:0071504)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heparin stimulus.
response to mycophenolic acid (GO:0071505)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mycophenolic acid stimulus.
Synonyms: response to mycophenolate
cellular response to mycophenolic acid (GO:0071506)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mycophenolic acid stimulus.
Synonyms: cellular response to mycophenolate
pheromone response MAPK cascade (GO:0071507)
Namespace: biological_process
Definition: A MAPK cascade containing at least the Fus3 MAP kinase. It starts with the activation of Ste20, a MAP4K, which activates Ste11, a MAP3K, which in turn activate Ste7, a MAP2K, which activates Fus3. The kinases in each tier phosphorylate and activate the kinases in the downstream tier. This MAPK cascade is triggered by a pheromone activating its G protein-coupled receptor, and results in cellular responses that lead to conjugation with cellular fusion.
Synonyms: conjugation with cellular fusion, MAPKKK cascade; Fus3 signaling cascade; MAPK cascade involved in conjugation with cellular fusion; MAPK signaling in response to pheromone; MAPKKK cascade involved in conjugation with cellular fusion; MAPKKK cascade involved in mating response; pheromone MAPK module
obsolete activation of MAPK activity involved in conjugation with cellular fusion (GO:0071508)
Namespace: biological_process
Definition: OBSOLETE. Any process that initiates the activity of the inactive enzyme MAP kinase in the context of conjugation with cellular fusion.
Synonyms: activation of MAPK activity involved in mating response; conjugation with cellular fusion, activation of MAPK activity
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete activation of MAPKK activity involved in conjugation with cellular fusion (GO:0071509)
Namespace: biological_process
Definition: OBSOLETE. Any process that initiates the activity of the inactive enzyme MAP kinase kinase in the context of conjugation with cellular fusion.
Synonyms: activation of MAP kinase kinase activity during conjugation with cellular fusion; activation of MAPKK activity involved in mating response; conjugation with cellular fusion, activation of MAP kinase kinase activity; conjugation with cellular fusion, activation of MAPKK activity
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete activation of MAPKKK activity involved in conjugation with cellular fusion (GO:0071510)
Namespace: biological_process
Definition: OBSOLETE. Any process that initiates the activity of the inactive enzyme MAP kinase kinase kinase in the context of conjugation with cellular fusion.
Synonyms: activation of MAP kinase kinase kinase activity during conjugation with cellular fusion; activation of MAPKKK activity involved in mating response; conjugation with cellular fusion, activation of MAP kinase kinase kinase activity; conjugation with cellular fusion, activation of MAPKKK activity
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete inactivation of MAPK activity involved in conjugation with cellular fusion (GO:0071511)
Namespace: biological_process
Definition: OBSOLETE. Any process that terminates the activity of the active enzyme MAP kinase in the context of conjugation with cellular fusion.
Synonyms: conjugation with cellular fusion, inactivation of MAPK activity; conjugation with cellular fusion, termination of MAPK activity; inactivation of MAPK activity involved in mating response; termination of MAPK activity during conjugation with cellular fusion
Comment: This term was obsoleted because it represents a GO-CAM model.
phosphopantothenoylcysteine decarboxylase complex (GO:0071513)
Namespace: cellular_component
Definition: A protein complex that catalyzes decarboxylation of 4'-phosphopantothenoylcysteine to yield 4'-phosphopantetheine; this is the third step in the biosynthesis of Coenzyme A. The complex is homotrimeric in many eukaryotes, but is a heterotrimer in Saccharomyces.
Comment: See also the molecular function term 'acetolactate synthase activity ; GO:0003984'.
genomic imprinting (GO:0071514)
Namespace: biological_process
Definition: The establishment of epigenetic modifications (imprints) during gametogenesis, and propagation of these imprints during the organism's life. Genomic imprinting leads to an asymmetry between the maternal and paternal alleles and differential expression of the corresponding alleles. This can happen through heterochromatin formation or differential chromatin loop formation.
Synonyms: DNA imprinting; establishment of genomic imprinting; genetic imprinting
mating-type locus imprinting (GO:0071515)
Namespace: biological_process
Definition: A genomic imprinting process in which a stable single-strand DNA lesion triggers programmed gene conversion at the mating-type locus, thereby restricting mating-type interconversion to one of the two sister chromatids during DNA replication.
Synonyms: genetic imprinting at mating-type locus; genomic imprinting at mating-type locus; mating type determination, imprinting
obsolete establishment of imprinting at mating-type locus (GO:0071516)
Namespace: biological_process
Definition: OBSOLETE. The initial formation of a stable single-strand DNA lesion that triggers programmed gene conversion at the mating-type locus, thereby restricting mating-type interconversion to one of the two sister chromatids during DNA replication.
Synonyms: mating type determination, establishment of imprinting
Comment: This term was obsoleted because it represents a molecular function.
obsolete maintenance of imprinting at mating-type locus (GO:0071517)
Namespace: biological_process
Definition: OBSOLETE. Any process involved in preserving the structure of a stable single-strand DNA lesion that triggers programmed gene conversion at the mating-type locus, thereby restricting mating-type interconversion to one of the two sister chromatids during DNA replication.
Synonyms: mating type determination, maintenance of imprinting
Comment: Tis term was obsoleted because it represents a molecular function.
autoinducer-2 kinase activity (GO:0071518)
Namespace: molecular_function
Definition: Catalysis of the reaction: (S)-4,5-dihydroxypentane-2,3-dione + ATP = (2S)-2-hydroxy-3,4-dioxopentyl phosphate + ADP + H+.
Synonyms: 4,5-dihydroxy-pentane-2,3-dione kinase activity
actomyosin contractile ring actin filament bundle assembly (GO:0071519)
Namespace: biological_process
Definition: A process of actin filament bundle formation that occurs in the context of assembling an actomyosin contractile ring during cytokinesis.
Synonyms: actin filament bundle assembly involved in actomyosin contractile ring formation; actin filament bundle assembly involved in cytokinetic actomyosin contractile ring assembly
actomyosin contractile ring assembly actin filament bundle convergence (GO:0071520)
Namespace: biological_process
Definition: A process of actin filament bundle distribution that occurs in the context of assembling an actomyosin contractile ring during cytokinesis, and that results in the compaction of actin filaments into a tight ring.
Synonyms: actin filament bundle convergence involved in actomyosin contractile ring formation; actin filament bundle convergence involved in cytokinetic actomyosin contractile ring assembly
Cdc42 GTPase complex (GO:0071521)
Namespace: cellular_component
Definition: A protein complex formed by the association of the small GTPase Cdc42 with additional proteins. In Schizosaccharomyces the complex contains the Cdc42, Ras1, Scd1, Scd2, andShk1 proteins, and functions in the Ras1-Scd GTPase signaling pathway.
Synonyms: Ras1-Scd1-Scd2-Cdc42-Shk1 complex
ureidoglycine aminohydrolase activity (GO:0071522)
Namespace: molecular_function
Definition: Catalysis of the reaction: (S)-2-ureidoglycine + H2O = (S)-ureidoglycolate + NH4+.
obsolete TIR domain-mediated complex assembly (GO:0071523)
Namespace: biological_process
Definition: OBSOLETE. A process of protein complex assembly in which the arrangement and bonding together of the set of components that form the protein complex is mediated by a TIR domain interaction.
Comment: This term was obsoleted because it represented a molecular function (binding), not a biological process. The term represented a domain involved in protein-protein interactions, but no necessarily the process of assembling a complex.
pyrrolysine biosynthetic process (GO:0071524)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of pyrrolysine.
Synonyms: monomethylamine methyltransferase cofactor lysine adduct biosynthetic process; pyrrolysine anabolism; pyrrolysine biosynthesis; pyrrolysine formation; pyrrolysine synthesis
obsolete pyrrolysine metabolic process (GO:0071525)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving pyrrolysine, N6-{[(2R,3R)-3-methyl-3,4-dihydro-2H-pyrrol-2-yl]carbonyl}-L-lysine.
Synonyms: monomethylamine methyltransferase cofactor lysine adduct metabolic process; pyrrolysine metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
semaphorin-plexin signaling pathway (GO:0071526)
Namespace: biological_process
Definition: The series of molecular signals generated as a consequence of a semaphorin receptor (composed of a plexin and a neurophilin) binding to a semaphorin ligand.
Synonyms: semaphorin-plexin signalling pathway
obsolete semaphorin-plexin signaling pathway involved in outflow tract morphogenesis (GO:0071527)
Namespace: biological_process
Definition: OBSOLETE. The series of molecular signals generated as a consequence of a semaphorin receptor (composed of a plexin and a neurophilin) binding to a semaphorin ligand that contributes to outflow tract morphogenesis.
Synonyms: semaphorin-plexin signalling pathway involved in outflow tract morphogenesis
Comment: This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.
tRNA re-export from nucleus (GO:0071528)
Namespace: biological_process
Definition: The directed movement from the nucleus to the cytoplasm of a tRNA that was previously exported to the cytoplasm and then imported back into the nucleus. The processes of primary tRNA export and secondary export (re-export) can be distinguished because in organisms in which tRNA splicing occurs in the cytoplasm, the export of a mature tRNA must occur by re-export.
Synonyms: tRNA reexport from nucleus
cementum mineralization (GO:0071529)
Namespace: biological_process
Definition: The process in which calcium salts, mainly carbonated hydroxyapatite, are deposited into the initial acellular cementum.
Synonyms: cementum formation
obsolete FHA domain-mediated complex assembly (GO:0071530)
Namespace: biological_process
Definition: OBSOLETE. A process of protein complex assembly in which the arrangement and bonding together of the set of components that form the protein complex is mediated by an FHA (forkhead-associated) domain interaction.
Synonyms: forkhead-associated domain-mediated complex assembly
Comment: This term was obsoleted because it represented a molecular function (binding), not a biological process. The term represented a domain involved in protein-protein interactions, but no necessarily the process of assembling a complex.
obsolete Rel homology domain-mediated complex assembly (GO:0071531)
Namespace: biological_process
Definition: OBSOLETE. A process of protein complex assembly in which the arrangement and bonding together of the set of components that form the protein complex is mediated by a Rel homology domain (RHD) interaction.
Synonyms: RHD domain-mediated complex assembly
Comment: This term was obsoleted because it represented a molecular function (binding), not a biological process. The term represented a domain involved in protein-protein interactions, but no necessarily the process of assembling a complex.
ankyrin repeat binding (GO:0071532)
Namespace: molecular_function
Definition: Binding to an ankyrin repeat of a protein. Ankyrin repeats are tandemly repeated modules of about 33 amino acids; each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90-degree angle, and repeats stack to form an L-shaped structure.
Synonyms: ANK repeat binding
obsolete ankyrin repeat-mediated complex assembly (GO:0071533)
Namespace: biological_process
Definition: OBSOLETE. A process of protein complex assembly in which the arrangement and bonding together of the set of components that form the protein complex is mediated by an ankyrin repeat interaction.
Synonyms: ANK repeat-mediated complex assembly
Comment: This term was obsoleted because it represented a molecular function (binding), not a biological process. The term represented a domain involved in protein-protein interactions, but no necessarily the process of assembling a complex.