LiteFold/GO huggingface dataset:
obsolete regulation of transcription from RNA polymerase II promoter in response to zinc ion starvation (GO:0034225)
Namespace: biological_process
Definition: OBSOLETE. Modulation of the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a stimulus indicating the organism is deprived of zinc ions.
Synonyms: regulation of transcription from RNA polymerase II promoter in response to zinc deficiency; regulation of transcription from RNA polymerase II promoter in response to zinc ion limitation
Comment: This term was obsoleted because it represents a GO-CAM model.
tRNA thio-modification (GO:0034227)
Namespace: biological_process
Definition: The addition a sulfur atom to a nucleotide in a tRNA molecule.
Synonyms: tRNA thiolation
ethanolamine transmembrane transporter activity (GO:0034228)
Namespace: molecular_function
Definition: Enables the transfer of ethanolamine from one side of a membrane to the other. Ethanolamine (2-aminoethanol, monoethanolamine) is an amino alcohol that occurs widely in living organisms as a constituent of certain types of phospholipids, such as phosphatidylethanolamine.
Synonyms: 2-aminoethanol transmembrane transporter activity; ethanolamine permease activity; monoethanolamine transmembrane transporter activity
ethanolamine transport (GO:0034229)
Namespace: biological_process
Definition: The directed movement of ethanolamine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Ethanolamine (2-aminoethanol, monoethanolamine) is an amino alcohol that occurs widely in living organisms as a constituent of certain types of phospholipids, such as phosphatidylethanolamine.
Synonyms: 2-aminoethanol transport; monoethanolamine transport
enkephalin processing (GO:0034230)
Namespace: biological_process
Definition: The formation of mature enkephalin, a pentapeptide hormone involved in regulating pain and nociception in the body by proteolytic processing of enkephalin propeptide.
Synonyms: enkephalin formation; peptide enkephalin formation; peptide enkephalin processing
islet amyloid polypeptide processing (GO:0034231)
Namespace: biological_process
Definition: The formation of mature islet amyloid polypeptide (IAPP) by posttranslational processing of pro-islet amyloid polypeptide (pro-IAPP).
Synonyms: IAPP formation; IAPP processing; islet amyloid peptide formation; islet amyloid peptide processing; islet amyloid polypeptide formation
obsolete regulation of cell wall chitin catabolic process (GO:0034233)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of cell wall chitin.
Synonyms: regulation of cell wall chitin breakdown; regulation of cell wall chitin catabolism; regulation of cell wall chitin degradation
Comment: The reason for obsoletion is that this^Cerm is mixing biological process and cellular component.
obsolete regulation of ascospore wall chitin catabolic process (GO:0034234)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of ascospore wall chitin.
Synonyms: regulation of ascospore wall chitin breakdown; regulation of ascospore wall chitin catabolism; regulation of ascospore wall chitin degradation
Comment: The reason for obsoletion is that this term is mixing biological process and cellular component.
GPI anchor binding (GO:0034235)
Namespace: molecular_function
Definition: Binding to a glycosylphosphatidylinositol anchor. GPI anchors serve to attach membrane proteins to the lipid bilayer of cell membranes.
Synonyms: glycosylphosphatidylinositol binding
Comment: Note that this term should be used to annotate gene products that interact non-covalently with GPI anchors, and not proteins that have GPI anchors covalently attached.
protein kinase A catalytic subunit binding (GO:0034236)
Namespace: molecular_function
Definition: Binding to one or both of the catalytic subunits of protein kinase A.
Synonyms: PKA catalytic subunit binding
protein kinase A regulatory subunit binding (GO:0034237)
Namespace: molecular_function
Definition: Binding to one or both of the regulatory subunits of protein kinase A.
Synonyms: PKA regulatory subunit binding; protein kinase A anchoring activity
macrophage fusion (GO:0034238)
Namespace: biological_process
Definition: The binding and fusion of a macrophage to one or more other cells to form a multinucleated cell.
negative regulation of macrophage fusion (GO:0034240)
Namespace: biological_process
Definition: Any process that stops, prevents, or decreases the frequency, rate or extent of macrophage fusion.
positive regulation of macrophage fusion (GO:0034241)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of macrophage fusion.
negative regulation of syncytium formation by plasma membrane fusion (GO:0034242)
Namespace: biological_process
Definition: Any process that decreases the frequency, rate or extent of the formation of a syncytium, a mass of cytoplasm containing several nuclei enclosed within a single plasma membrane, by the fusion of the plasma membranes of two or more individual cells.
regulation of transcription elongation by RNA polymerase II (GO:0034243)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides, catalyzed by RNA polymerase II.
Synonyms: regulation of gene-specific transcription elongation from RNA polymerase II promoter; regulation of RNA elongation from RNA polymerase II promoter; regulation of transcription elongation from RNA polymerase II promoter
negative regulation of transcription elongation by RNA polymerase II (GO:0034244)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides, catalyzed by RNA polymerase II.
Synonyms: negative regulation of gene-specific transcription elongation from RNA polymerase II promoter; negative regulation of RNA elongation from RNA polymerase II promoter; negative regulation of transcription elongation from RNA polymerase II promoter
mitochondrial DNA-directed RNA polymerase complex (GO:0034245)
Namespace: cellular_component
Definition: A DNA-directed RNA polymerase complex located in the mitochondrion. Mitochondrial RNA polymerase is composed of two subunits, a catalytic core, which resembles the enzymes from bacteriophage T7 and T3, and a specificity factor required for promoter recognition, which is similar to members of the eubacterial sigma factor family. In S. cerevisiae, these are encoded by the nuclear genes RPO41 and MTF1 and the specificity factor, required for promoter recognition and initiation, is not present in the elongating form.
Synonyms: mitochondrial RNA polymerase complex; mitochondrial RNA polymerase holoenzyme complex
mitochondrial transcription factor activity (GO:0034246)
Namespace: molecular_function
Definition: Interacting with the mitochondrial promoter DNA to modulate transcription by the mitochondrial RNA polymerase.
Synonyms: mitochondrial DNA-binding transcription factor activity; mitochondrial polymerase transcription factor activity; mitochondrial RNA polymerase binding promoter specificity activity; mitochondrial RNA polymerase core promoter proximal region sequence-specific DNA binding transcription factor activity; mitochondrial RNA polymerase core promoter sequence-specific DNA binding transcription factor activity; mitochondrial RNA polymerase promoter specificity activity; mitochondrial RNA polymerase transcription factor activity, sequence-specific DNA binding; mitochondrial sequence-specific DNA binding transcription factor activity; mitochondrial sequence-specific DNA-binding transcription factor activity; mitochondrial transcription initiation factor activity; sequence-specific DNA binding mitochondrial RNA polymerase transcription factor activity; transcription factor activity, mitochondrial proximal promoter sequence-specific binding; transcription factor activity, mitochondrial RNA polymerase core promoter proximal region sequence-specific binding; transcription factor activity, mitochondrial RNA polymerase core promoter sequence-specific DNA binding
snoRNA splicing (GO:0034247)
Namespace: biological_process
Definition: The process of removing sections of a primary snoRNA transcript to remove sequences not present in the mature form of the snoRNA and joining the remaining sections to form the mature form of the snoRNA.
obsolete regulation of amide metabolic process (GO:0034248)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving amides.
Comment: The reason for obsoletion is that this term was an unnecessary grouping term.
obsolete negative regulation of amide metabolic process (GO:0034249)
Namespace: biological_process
Definition: OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving amides.
Comment: The reason for obsoletion is that this term was an unnecessary grouping term.
obsolete positive regulation of amide metabolic process (GO:0034250)
Namespace: biological_process
Definition: OBSOLETE. Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving amides.
Comment: The reason for obsoletion is that this term was an unnecessary grouping term.
obsolete regulation of amide catabolic process (GO:0034251)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of amides.
Comment: The reason for obsoletion is that this term was an unnecessary grouping term.
obsolete negative regulation of amide catabolic process (GO:0034252)
Namespace: biological_process
Definition: OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of amides.
Comment: The reason for obsoletion is that this term was an unnecessary grouping term.
obsolete positive regulation of amide catabolic process (GO:0034253)
Namespace: biological_process
Definition: OBSOLETE. Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of amides.
Comment: The reason for obsoletion is that this term was an unnecessary grouping term.
regulation of urea catabolic process (GO:0034254)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of urea.
Synonyms: regulation of urea breakdown; regulation of urea catabolism; regulation of urea degradation
obsolete regulation of urea metabolic process (GO:0034255)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving urea.
Synonyms: regulation of urea metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
chlorophyll(ide) b reductase activity (GO:0034256)
Namespace: molecular_function
Definition: Catalysis of the reaction: 71-hydroxychlorophyll(ide) a + NAD(P)+ = chlorophyll(ide) b + NAD(P)H + H+.
Synonyms: Chl b reductase activity; chlorophyll b reductase activity; chlorophyllide b reductase activity
nicotinamide riboside transmembrane transporter activity (GO:0034257)
Namespace: molecular_function
Definition: Enables the transfer of nicotinamide riboside, which is a pyridine-3-carboxamide covalently bonded to a ribose sugar, from one side of a membrane to the other.
nicotinamide riboside transport (GO:0034258)
Namespace: biological_process
Definition: The directed movement of a nicotinamide riboside, which is a pyridine-3-carboxamide covalently bonded to a ribose sugar, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
obsolete isopentenyl adenine metabolic process (GO:0034264)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving the cytokinin 6-isopentenyladenine.
Synonyms: isopentenyl adenine metabolism; isopentenyladenine metabolic process
Comment: This term was obsoleted because it is an unnecessary grouping term.
isopentenyl adenine biosynthetic process (GO:0034265)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of the cytokinin 6-isopentenyladenine.
Synonyms: isopentenyl adenine anabolism; isopentenyl adenine biosynthesis; isopentenyl adenine formation; isopentenyl adenine synthesis; isopentenyladenine biosynthetic process
isopentenyl adenine catabolic process (GO:0034266)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of the cytokinin 6-isopentenyladenine.
Synonyms: isopentenyl adenine breakdown; isopentenyl adenine catabolism; isopentenyl adenine degradation; isopentenyladenine catabolic process
obsolete discadenine metabolic process (GO:0034267)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving discadenine, (2S)-2-amino-4-{6-[(3-methylbut-2-en-1-yl)amino]-3H-purin-3-yl}butanoic acid.
Synonyms: discadenine metabolism
Comment: This term was obsoleted because it is an unnecessary grouping term.
obsolete discadenine biosynthetic process (GO:0034268)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of discadenine, (2S)-2-amino-4-{6-[(3-methylbut-2-en-1-yl)amino]-3H-purin-3-yl}butanoic acid.
Synonyms: discadenine anabolism; discadenine biosynthesis; discadenine formation; discadenine synthesis
Comment: The reason for merging the above terms is to clean up this branch, consistent to what has been done previously.
obsolete discadenine catabolic process (GO:0034269)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the breakdown of discadenine, (2S)-2-amino-4-{6-[(3-methylbut-2-en-1-yl)amino]-3H-purin-3-yl}butanoic acid.
Synonyms: discadenine breakdown; discadenine catabolism; discadenine degradation
Comment: This term was obsoleted because there is no evidence that a specific pathway for discadenine degradation exists.
Cvt complex (GO:0034270)
Namespace: cellular_component
Definition: A protein complex that is involved in the Cvt pathway. In budding yeast, the Cvt complex consists of multimers of preApe1p.
Synonyms: cytoplasm to vacuole targeting complex; cytoplasm-to-vacuole targeting complex
phosphatidylinositol 3-kinase complex, class III, type I (GO:0034271)
Namespace: cellular_component
Definition: A class III phosphatidylinositol 3-kinase complex that is involved in autophagy. In budding yeast, this complex consists of Vps30p, Vps34p, Apg14p and Vps15p.
Synonyms: autophagy-specific phosphatidylinositol 3-kinase (PtdIns3K) complex; phosphatidylinositol 3-kinase complex I; PtdIns-3-kinase complex I
Comment: Note that this term should not be confused with '1-phosphatidylinositol-4-phosphate 3-kinase, class IA complex; GO:0005943' or '1-phosphatidylinositol-4-phosphate 3-kinase, class IB complex ; GO:0005944'.
phosphatidylinositol 3-kinase complex, class III, type II (GO:0034272)
Namespace: cellular_component
Definition: A class III phosphatidylinositol 3-kinase complex that is involved in vacuolar protein sorting (VPS) via endosomes. In budding yeast, this complex consists of Vps30p, Vps34p, Vps38 and Vps15p.
Synonyms: phosphatidylinositol 3-kinase complex II; PtdIns-3-kinase complex II
Comment: Note that this term should not be confused with '1-phosphatidylinositol-4-phosphate 3-kinase, class IA complex; GO:0005943' or '1-phosphatidylinositol-4-phosphate 3-kinase, class IB complex ; GO:0005944'.
Atg12-Atg5-Atg16 complex (GO:0034274)
Namespace: cellular_component
Definition: A protein complex required for the expansion of the autophagosomal membrane. In budding yeast, this complex consists of Atg12p, Atg5p and Atg16p.
kynurenic acid metabolic process (GO:0034275)
Namespace: biological_process
Definition: The chemical reactions and pathways involving kynurenic acid, 4-hydroxyquinoline-2-carboxylic acid.
Synonyms: 4-hydroxyquinoline-2-carboxylic acid metabolic process; kynurenic acid metabolism
kynurenic acid biosynthetic process (GO:0034276)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of kynurenic acid, 4-hydroxyquinoline-2-carboxylic acid.
Synonyms: 4-hydroxyquinoline-2-carboxylic acid biosynthetic process; kynurenic acid anabolism; kynurenic acid biosynthesis; kynurenic acid formation; kynurenic acid synthesis
ent-cassa-12,15-diene synthase activity (GO:0034277)
Namespace: molecular_function
Definition: Catalysis of the reaction: ent-copalyl diphosphate = ent-cassa-12,15-diene + diphosphate.
Synonyms: ent-copalyl-diphosphate diphosphate-lyase (ent-cassa-12,15-diene-forming) activity
stemar-13-ene synthase activity (GO:0034278)
Namespace: molecular_function
Definition: Catalysis of the reaction: 9-alpha-copalyl diphosphate = stemar-13-ene + diphosphate.
Synonyms: 9alpha-copalyl-diphosphate diphosphate-lyase (stemar-13-ene-forming) activity
syn-pimara-7,15-diene synthase activity (GO:0034279)
Namespace: molecular_function
Definition: Catalysis of the reaction: 9-alpha-copalyl diphosphate = 9-beta-pimara-7,15-diene + diphosphate.
Synonyms: 9alpha-copalyl-diphosphate diphosphate-lyase (9beta-pimara-7,15-diene-forming) activity
ent-sandaracopimaradiene synthase activity (GO:0034280)
Namespace: molecular_function
Definition: Catalysis of the reaction: ent-copalyl diphosphate = ent-sandaracopimara-8(14),15-diene + diphosphate.
Synonyms: ent-copalyl-diphosphate diphosphate-lyase [ent-sandaracopimara-8(14),15-diene-forming] activity; ent-pimaradiene synthase activity
ent-isokaurene synthase activity (GO:0034281)
Namespace: molecular_function
Definition: Catalysis of the reaction: ent-copalyl diphosphate = ent-isokaurene + diphosphate.
syn-stemod-13(17)-ene synthase activity (GO:0034283)
Namespace: molecular_function
Definition: Catalysis of the reaction: 9-alpha-copalyl diphosphate = stemod-13(17)-ene + diphosphate.
Synonyms: 9alpha-copalyl-diphosphate diphosphate-lyase [stemod-13(17)-ene-forming] activity; exo-stemodene synthase activity; stemod-13(17)-ene synthase activity; stemodene synthase activity; syn-stemodene synthase activity
response to disaccharide (GO:0034285)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disaccharide stimulus.
Synonyms: response to disaccharide stimulus
response to maltose (GO:0034286)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a maltose stimulus.
Synonyms: response to maltose stimulus
detection of disaccharide stimulus (GO:0034288)
Namespace: biological_process
Definition: The series of events in which a stimulus from a disaccharide is received and converted into a molecular signal.
Synonyms: perception of disaccharide stimulus
detection of maltose stimulus (GO:0034289)
Namespace: biological_process
Definition: The series of events in which a maltose stimulus is received by a cell and converted into a molecular signal.
Synonyms: perception of maltose stimulus
sexual sporulation (GO:0034293)
Namespace: biological_process
Definition: The formation of spores derived from the products of meiosis.
Synonyms: meiotic spore formation; meiotic sporulation; sexual spore formation
sexual spore wall assembly (GO:0034294)
Namespace: biological_process
Definition: The aggregation, arrangement and bonding together of a set of components to form a sexual spore wall, the specialized envelope lying outside the cell membrane of a spore derived from a product of meiosis.
Synonyms: sexual spore wall formation
basidiospore formation (GO:0034295)
Namespace: biological_process
Definition: The process in which spores form outside a specialized end cell known as a basidium. Basidia are characteristic of the basidiomycete fungi (phylum Basidiomycota), and give rise to spores that each contain a haploid nucleus that is the product of meiosis. The spores are usually attached to the basidium by short spikes called sterigmata (singular: sterigma). In most basidiomycetes there are four sterigmata (and four spores) to a basidium.
Comment: Note that basidiospores and basidia are separate biological structures. The basidium is the structure that bear the basidiospores, but the development of the basidium is a different process than the formation of the basidiospores themselves. For this reason, GO:0034295 basidiospore formation and GO:0075313 basidium development are different terms and are not linked.
zygospore formation (GO:0034296)
Namespace: biological_process
Definition: The process in which zygospores are formed. Zygospores are characteristic of the zygomycete fungi (phylum Zygomycota) thick-walled and darkly colored, and usually heavily ornamented as well, with many spines or ridges. It is formed between two specialized organs called suspensors, which are themselves usually heavily ornamented, one from each mating partner. The zygospore forms between them and then breaks away.
oidium formation (GO:0034297)
Namespace: biological_process
Definition: The process in which oidia, a type of asexual spore found in fungi, are formed. Oidia are borne a few at a time on very simple hyphae that protrude a short distance into the substrate, and are usually presumed not to constitute the main reproductive strategy of the fungus.
reproductive blastospore formation (GO:0034299)
Namespace: biological_process
Definition: The formation of a spore following the marked enlargement of part of a cell before separation by a septum. Blastospores are a type of asexual spore found in some fungi, most notably the class Glomeromycota.
Synonyms: blastoconidium formation
Comment: Note that this term should not be confused with the usage of 'blastospore' to mean any yeast-form fungal cell, as in Candida species.
sporangiospore formation (GO:0034300)
Namespace: biological_process
Definition: The process in which sporangiospores, a type of asexual spore found in fungi, are formed. Sporangiospores are formed within sac-like structure, the sporangium, following the division of the cytoplasm.
endospore formation (GO:0034301)
Namespace: biological_process
Definition: The process in which a cell gives rise to an endospore, a dormant, highly resistant spore with a thick wall that forms within the mother cell. Endospores are produced by some low G+C Gram-positive bacteria in response to harsh conditions.
akinete formation (GO:0034302)
Namespace: biological_process
Definition: The process in which an akinete, a thick-walled (encysted) dormant cell derived from the enlargement of a vegetative cell, is formed. Akinetes typically have granular cytoplasm, are more resistant to environmental extremes than vegetative cells, and are characteristic of several groups of Cyanobacteria.
myxospore formation (GO:0034303)
Namespace: biological_process
Definition: The process in which differentiated, resting cells are formed, usually within a fruiting body by Myxobacteria. The myxospore is more resistant to high temperature, desiccation, and UV than vegetative myxobacteria.
actinomycete-type spore formation (GO:0034304)
Namespace: biological_process
Definition: The process in which differentiated, resting cells are formed from a substrate mycelium; characteristic of many members of the order Actinomycetales.