LiteFold/GO huggingface dataset:
phytochromobilin biosynthetic process (GO:0010024)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of phytochromobilin, which involves the oxidative cleavage of heme by a heme oxygenase(HO) to form biliverdin IX alpha.
Synonyms: phytochromobilin anabolism; phytochromobilin biosynthesis; phytochromobilin formation; phytochromobilin synthesis
wax biosynthetic process (GO:0010025)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of wax, which includes C16 and C18 fatty acids.
Synonyms: wax anabolism; wax biosynthesis; wax formation; wax synthesis
trichome differentiation (GO:0010026)
Namespace: biological_process
Definition: The process in which a relatively unspecialized epidermal cell acquires the specialized features of a trichome cell. An example of this process is found in Arabidopsis thaliana.
Synonyms: trichome cell differentiation
thylakoid membrane organization (GO:0010027)
Namespace: biological_process
Definition: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the thylakoid membrane.
Synonyms: thylakoid membrane organisation; thylakoid membrane organization and biogenesis
Comment: See also the cellular component term 'thylakoid membrane ; GO:0042651'.
xanthophyll cycle (GO:0010028)
Namespace: biological_process
Definition: A cyclic series of interconversions involving three xanthophylls, violoxanthin, antheraxanthin, and zeaxanthin. The xanthophyll cycle is involved in regulating energy dissipation in light harvesting complex II.
regulation of seed germination (GO:0010029)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of seed germination.
positive regulation of seed germination (GO:0010030)
Namespace: biological_process
Definition: Any process that activates or increase the rate of seed germination.
Synonyms: activation of seed germination; stimulation of seed germination; up regulation of seed germination; up-regulation of seed germination; upregulation of seed germination
circumnutation (GO:0010031)
Namespace: biological_process
Definition: The organismal movement by which the tip of a plant organ follows a spiral pattern as a consequence of growth.
obsolete response to organic substance (GO:0010033)
Namespace: biological_process
Definition: OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus.
Synonyms: process resulting in tolerance to organic substance
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.\nThe reason for obsoletion is that this term is an unnecessary grouping term.
response to acetate (GO:0010034)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an acetate stimulus.
obsolete response to inorganic substance (GO:0010035)
Namespace: biological_process
Definition: OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an inorganic substance stimulus.
Comment: The reason for obsoletion is that this term is an unnecessary grouping term.
response to boron-containing substance (GO:0010036)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a boron-containing substance stimulus.
Synonyms: response to boron
response to carbon dioxide (GO:0010037)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a carbon dioxide (CO2) stimulus.
response to metal ion (GO:0010038)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a metal ion stimulus.
Synonyms: heavy metal sensitivity/resistance; response to heavy metal; response to metal
response to iron ion (GO:0010039)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron ion stimulus.
Synonyms: response to iron
response to iron(II) ion (GO:0010040)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron(II) ion stimulus.
Synonyms: response to iron(II)
response to iron(III) ion (GO:0010041)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron(III) ion stimulus.
Synonyms: response to iron(III)
response to manganese ion (GO:0010042)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a manganese ion stimulus.
Synonyms: response to manganese
response to zinc ion (GO:0010043)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a zinc ion stimulus.
Synonyms: response to zinc
response to aluminum ion (GO:0010044)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an aluminum ion stimulus.
Synonyms: response to aluminium ion; response to aluminum
response to nickel cation (GO:0010045)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nickel cation stimulus.
Synonyms: response to nickel
fruit dehiscence (GO:0010047)
Namespace: biological_process
Definition: The process leading to the spontaneous opening of the fruit permitting the escape of seeds.
vernalization response (GO:0010048)
Namespace: biological_process
Definition: The process of thermal induction in plants in which flowering is promoted by exposure to low temperatures.
acquisition of plant reproductive competence (GO:0010049)
Namespace: biological_process
Definition: The process in which a plant acquires the ability to respond to a floral inductive signal.
Synonyms: acquisition of reproductive competence
vegetative phase change (GO:0010050)
Namespace: biological_process
Definition: Any process involved in the transition of a plant from a juvenile phase of vegetative development to an adult phase of vegetative development.
xylem and phloem pattern formation (GO:0010051)
Namespace: biological_process
Definition: The regionalization process that gives rise to the patterning of the conducting tissues. An example of this process is found in Arabidopsis thaliana.
Synonyms: vascular tissue pattern formation
guard cell differentiation (GO:0010052)
Namespace: biological_process
Definition: The process in which a guard mother cell acquires the specialized features of a guard cell.
Synonyms: stomatal cell differentiation
root epidermal cell differentiation (GO:0010053)
Namespace: biological_process
Definition: The process in which a relatively unspecialized cell in the root epidermis acquires the specialized features of a trichoblast or atrichoblast.
atrichoblast differentiation (GO:0010055)
Namespace: biological_process
Definition: The process in which a relatively unspecialized cell acquires the specialized features of an atrichoblast, a root epidermal cell that will not give rise to a root hair.
atrichoblast fate specification (GO:0010056)
Namespace: biological_process
Definition: The process involved in the specification of an atrichoblast.
trichoblast fate specification (GO:0010057)
Namespace: biological_process
Definition: The process involved in the specification of a trichoblast.
regulation of atrichoblast fate specification (GO:0010058)
Namespace: biological_process
Definition: Any process that modulates atrichoblast fate specification.
positive regulation of atrichoblast fate specification (GO:0010059)
Namespace: biological_process
Definition: Any process that induces or promotes atrichoblast fate specification.
Synonyms: activation of atrichoblast fate; stimulation of atrichoblast fate; up regulation of atrichoblast fate; up-regulation of atrichoblast fate; upregulation of atrichoblast fate
negative regulation of atrichoblast fate specification (GO:0010060)
Namespace: biological_process
Definition: Any process that suppresses atrichoblast fate specification.
Synonyms: down regulation of atrichoblast fate; down-regulation of atrichoblast fate; downregulation of atrichoblast fate; inhibition of atrichoblast fate
regulation of trichoblast fate specification (GO:0010061)
Namespace: biological_process
Definition: Any process that modulates trichoblast fate specification.
embryonic shoot morphogenesis (GO:0010064)
Namespace: biological_process
Definition: The process in which the anatomical structures of embryonic shoot are generated and organized.
Synonyms: primary shoot system morphogenesis
primary meristem tissue development (GO:0010065)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the primary meristem over time, from formation to the mature structure, as it occurs during plant embryogenesis. The primary meristem tissue is the protoderm, ground meristem and procambium.
Synonyms: primary meristem histogenesis
ground meristem histogenesis (GO:0010066)
Namespace: biological_process
Definition: The formation of the primary meristem or meristematic tissue that gives rise to the ground tissues.
procambium histogenesis (GO:0010067)
Namespace: biological_process
Definition: The formation of the primary meristem or meristematic tissue that gives rise to the primary vascular tissue.
protoderm histogenesis (GO:0010068)
Namespace: biological_process
Definition: The formation of the primary meristem or meristematic tissue that gives rise to the epidermis.
zygote asymmetric cytokinesis in embryo sac (GO:0010069)
Namespace: biological_process
Definition: The division of the zygote in a plane perpendicular to the long axis of the embryo sac to produce a larger basal cell near the micropyle and a small terminal cell close to what was the central cell and is now the developing endosperm. An example of this process is found in Arabidopsis thaliana.
zygote asymmetric cell division (GO:0010070)
Namespace: biological_process
Definition: The division of the zygote into two daughter cells that will adopt developmentally distinct potentials.
Synonyms: zygote asymmetric cytokinesis
primary shoot apical meristem specification (GO:0010072)
Namespace: biological_process
Definition: The specification of the meristem which will give rise to all post-embryonic above-ground structures of the plant as well as the non-root below-ground structures, such as rhizomes and tubers.
Synonyms: embryo shoot apical meristem specification
meristem maintenance (GO:0010073)
Namespace: biological_process
Definition: Any process involved in maintaining the identity, size and shape of a meristem.
maintenance of meristem identity (GO:0010074)
Namespace: biological_process
Definition: The process in which an organism retains a population of meristem cells, preventing the commitment of all stem cell progeny to a differentiated cell fate.
Synonyms: maintenance of meristem cell identity; meristem cell maintenance
regulation of meristem growth (GO:0010075)
Namespace: biological_process
Definition: Any process involved in maintaining the size and shape of a meristem.
Synonyms: regulation of meristem size
maintenance of floral meristem identity (GO:0010076)
Namespace: biological_process
Definition: The process in which an organism retains a population of floral meristem cells, preventing the commitment of all stem cell progeny to a differentiated cell fate.
maintenance of inflorescence meristem identity (GO:0010077)
Namespace: biological_process
Definition: The process in which an organism retains a population of inflorescence meristem cells, preventing the commitment of all stem cell progeny to a differentiated cell fate.
maintenance of root meristem identity (GO:0010078)
Namespace: biological_process
Definition: The process in which an organism retains a population of root meristem cells, preventing the commitment of all stem cell progeny to a differentiated cell fate.
maintenance of vegetative meristem identity (GO:0010079)
Namespace: biological_process
Definition: The process in which an organism retains a population of vegetative meristem cells, preventing the commitment of all stem cell progeny to a differentiated cell fate.
regulation of floral meristem growth (GO:0010080)
Namespace: biological_process
Definition: Any process involved in maintaining the size and shape of a floral meristem.
Synonyms: regulation of floral meristem size
regulation of inflorescence meristem growth (GO:0010081)
Namespace: biological_process
Definition: Any process involved in maintaining the size and shape of an inflorescence meristem.
Synonyms: regulation of inflorescence meristem size
regulation of root meristem growth (GO:0010082)
Namespace: biological_process
Definition: Any process involved in maintaining the size and shape of a root meristem.
Synonyms: regulation of root meristem size
regulation of vegetative meristem growth (GO:0010083)
Namespace: biological_process
Definition: Any process involved in maintaining the size and shape of a vegetative meristem.
Synonyms: regulation of vegetative meristem size
polarity specification of proximal/distal axis (GO:0010085)
Namespace: biological_process
Definition: Any process resulting in the establishment of polarity along the proximal/distal axis.
embryonic root morphogenesis (GO:0010086)
Namespace: biological_process
Definition: The process in which the anatomical structures of the embryonic root are generated and organized.
phloem or xylem histogenesis (GO:0010087)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of phloem and/or xylem over time, from formation to the mature structure. An example of this process is found in Arabidopsis thaliana.
Synonyms: vascular tissue development; vascular tissue histogenesis
phloem development (GO:0010088)
Namespace: biological_process
Definition: The formation of the principal food-conducting tissue of a vascular plant.
Synonyms: phloem histogenesis
xylem development (GO:0010089)
Namespace: biological_process
Definition: The formation of the principal water-conducting tissue of a vascular plant.
Synonyms: xylem histogenesis
trichome morphogenesis (GO:0010090)
Namespace: biological_process
Definition: The process in which the structures of a hair cell (trichome) cell are generated and organized. This process occurs while the initially relatively unspecialized epidermal cell is acquiring the specialized features of a hair cell. An example of this process is found in Arabidopsis thaliana.
Synonyms: trichome cell morphogenesis during differentiation
trichome branching (GO:0010091)
Namespace: biological_process
Definition: Any process involved in the formation of branches in plant hair cells. An example of this process is found in Arabidopsis thaliana.
specification of animal organ identity (GO:0010092)
Namespace: biological_process
Definition: The regionalization process in which the identity of an animal organ primordium is specified. Identity is considered to be the aggregate of characteristics by which a structure is recognized.
specification of floral organ identity (GO:0010093)
Namespace: biological_process
Definition: The process in which the identity of a floral organ primordium is specified. Identity is considered to be the aggregate of characteristics by which a structure is recognized.
specification of carpel identity (GO:0010094)
Namespace: biological_process
Definition: The process in which a floral organ primordium acquires the carpel identity. Identity is considered to be the aggregate of characteristics by which a structure is recognized.
specification of petal identity (GO:0010095)
Namespace: biological_process
Definition: The process in which a floral organ primordium acquires petal identity. Identity is considered to be the aggregate of characteristics by which a structure is recognized.
specification of sepal identity (GO:0010096)
Namespace: biological_process
Definition: The process in which a floral organ primordium acquires sepal identity. Identity is considered to be the aggregate of characteristics by which a structure is recognized.
specification of stamen identity (GO:0010097)
Namespace: biological_process
Definition: The process in which a floral organ primordium acquires stamen or staminode identity. Identity is considered to be the aggregate of characteristics by which a structure is recognized.
suspensor development (GO:0010098)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the suspensor over time, from its formation to the mature structure. The suspensor is the extension at the base of the embryo that anchors the embryo in the embryo sac and pushes it into the endosperm.
regulation of photomorphogenesis (GO:0010099)
Namespace: biological_process
Definition: Any process that modulates the rate or extent of photomorphogenesis.
negative regulation of photomorphogenesis (GO:0010100)
Namespace: biological_process
Definition: Any process that stops, reduces or prevents photomorphogenesis.
Synonyms: down regulation of photomorphogenesis; down-regulation of photomorphogenesis; downregulation of photomorphogenesis; inhibition of photomorphogenesis
post-embryonic root morphogenesis (GO:0010101)
Namespace: biological_process
Definition: The process in which the anatomical structures of the post-embryonic root are generated and organized. The post-embryonic root is the root formed after the embryonic phase has been completed.
lateral root morphogenesis (GO:0010102)
Namespace: biological_process
Definition: The process in which the anatomical structures of a lateral root are generated and organized. A lateral root is one formed from pericycle cells located on the xylem radius of the root, as opposed to the initiation of the main root from the embryo proper.
stomatal complex morphogenesis (GO:0010103)
Namespace: biological_process
Definition: The process in which the anatomical structures of the stomatal complex are generated and organized. The stomatal complex is the stomatal guard cells and their associated epidermal cells.
regulation of ethylene-activated signaling pathway (GO:0010104)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of ethylene (ethene) signal transduction.
Synonyms: regulation of ethene mediated signaling pathway; regulation of ethene mediated signalling pathway; regulation of ethylene mediated signaling pathway; regulation of ethylene mediated signalling pathway
negative regulation of ethylene-activated signaling pathway (GO:0010105)
Namespace: biological_process
Definition: Any process that stops or prevents ethylene (ethene) signal transduction.
Synonyms: down regulation of ethylene mediated signaling pathway; down-regulation of ethylene mediated signaling pathway; downregulation of ethylene mediated signaling pathway; inhibition of ethylene mediated signaling pathway; negative regulation of ethene mediated signaling pathway; negative regulation of ethene mediated signalling pathway; negative regulation of ethylene mediated signaling pathway; negative regulation of ethylene mediated signalling pathway
cellular response to iron ion starvation (GO:0010106)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of iron ions.
obsolete detection of glutamine (GO:0010108)
Namespace: biological_process
Definition: OBSOLETE. The series of events in which a glutamine stimulus is received by a cell and converted into a molecular signal.
Synonyms: glutamine detection; glutamine perception; glutamine sensing
Comment: This term was made obsolete because it represents a molecular function GO:0140786 glutamine sensor activity.
regulation of photosynthesis (GO:0010109)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of photosynthesis.
regulation of photosynthesis, dark reaction (GO:0010110)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of photosynthesis dark reaction.
regulation of systemic acquired resistance (GO:0010112)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of systemic acquired resistance.
negative regulation of systemic acquired resistance (GO:0010113)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of systemic acquired resistance.
Synonyms: down regulation of systemic acquired resistance; down-regulation of systemic acquired resistance; downregulation of systemic acquired resistance; inhibition of systemic acquired resistance
response to red light (GO:0010114)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs.
Synonyms: response to red light stimulus
regulation of abscisic acid biosynthetic process (GO:0010115)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of abscisic acid.
Synonyms: regulation of abscisic acid anabolism; regulation of abscisic acid biosynthesis; regulation of abscisic acid formation; regulation of abscisic acid synthesis