LiteFold/GO huggingface dataset:
flavonoid phytoalexin biosynthetic process (GO:0009716)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of flavonoid phytoalexins, a group of water-soluble phenolic derivatives containing a flavan skeleton, which possess antibiotic activity and are produced by plant tissues in response to infection.
Synonyms: flavonoid phytoalexin anabolism; flavonoid phytoalexin biosynthesis; flavonoid phytoalexin formation; flavonoid phytoalexin synthesis
isoflavonoid biosynthetic process (GO:0009717)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of isoflavonoids, a group of water-soluble phenolic derivatives, isomeric with flavonoids.
Synonyms: isoflavonoid anabolism; isoflavonoid biosynthesis; isoflavonoid formation; isoflavonoid synthesis
anthocyanin-containing compound biosynthetic process (GO:0009718)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of anthocyanins, any member of a group of intensely colored soluble glycosides of anthocyanidins.
Synonyms: anthocyanin anabolism; anthocyanin biosynthesis; anthocyanin biosynthetic process; anthocyanin formation; anthocyanin synthesis
response to endogenous stimulus (GO:0009719)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus arising within the organism.
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
detection of hormone stimulus (GO:0009720)
Namespace: biological_process
Definition: The series of events in which a hormone stimulus is received by a cell and converted into a molecular signal.
Synonyms: perception of hormone stimulus
detection of cytokinin stimulus (GO:0009722)
Namespace: biological_process
Definition: The series of events in which a cytokinin stimulus is received by a cell and converted into a molecular signal.
Synonyms: perception of cytokinin stimulus
detection of abscisic acid stimulus (GO:0009724)
Namespace: biological_process
Definition: The series of events in which an abscisic acid stimulus is received by a cell and converted into a molecular signal.
Synonyms: perception of abscisic acid stimulus
response to hormone (GO:0009725)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus.
Synonyms: growth regulator; response to hormone stimulus
obsolete detection of endogenous stimulus (GO:0009726)
Namespace: biological_process
Definition: OBSOLETE. The series of events in which an endogenous stimulus is received by a cell and converted into a molecular signal.
Synonyms: perception of endogenous stimulus
Comment: This term was obsoleted because it is an unnecessary grouping term.
detection of ethylene stimulus (GO:0009727)
Namespace: biological_process
Definition: The series of events in which an ethylene (ethene) stimulus is received by a cell and converted into a molecular signal.
Synonyms: detection of ethene stimulus; perception of ethene stimulus; perception of ethylene stimulus
detection of gibberellic acid stimulus (GO:0009728)
Namespace: biological_process
Definition: The series of events in which a gibberellic acid stimulus is received by a cell and converted into a molecular signal.
Synonyms: perception of gibberellic acid stimulus
detection of brassinosteroid stimulus (GO:0009729)
Namespace: biological_process
Definition: The series of events in which a brassinosteroid stimulus is received by a cell and converted into a molecular signal.
Synonyms: perception of brassinosteroid stimulus
detection of carbohydrate stimulus (GO:0009730)
Namespace: biological_process
Definition: The series of events in which a carbohydrate stimulus is received by a cell and converted into a molecular signal.
Synonyms: perception of carbohydrate stimulus
detection of sucrose stimulus (GO:0009731)
Namespace: biological_process
Definition: The series of events in which a sucrose stimulus is received by a cell and converted into a molecular signal.
Synonyms: perception of sucrose stimulus
detection of hexose stimulus (GO:0009732)
Namespace: biological_process
Definition: The series of events in which a stimulus from a hexose is received and converted into a molecular signal.
Synonyms: perception of hexose stimulus
auxin-activated signaling pathway (GO:0009734)
Namespace: biological_process
Definition: The series of molecular signals generated by the binding of the plant hormone auxin to a receptor, and ending with modulation of a downstream cellular process, e.g. transcription.
Synonyms: auxin mediated signaling pathway; auxin mediated signalling; auxin signal transduction; auxin signaling; auxin-regulated transcription
response to cytokinin (GO:0009735)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokinin stimulus.
Synonyms: response to cytokinin stimulus
cytokinin-activated signaling pathway (GO:0009736)
Namespace: biological_process
Definition: The series of molecular signals generated by the binding of a cytokinin to a receptor, and ending with the regulation of a downstream cellular process, e.g. transcription.
Synonyms: cytokinin mediated signaling pathway; cytokinin mediated signalling; cytokinin signaling
response to abscisic acid (GO:0009737)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus.
Synonyms: response to abscisic acid stimulus
response to gibberellin (GO:0009739)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gibberellin stimulus.
Synonyms: response to gibberellic acid stimulus; response to gibberellin stimulus
gibberellic acid mediated signaling pathway (GO:0009740)
Namespace: biological_process
Definition: The series of molecular signals mediated by the detection of gibberellic acid.
Synonyms: GA-signaling; gibberellic acid mediated signalling; gibberellic acid signaling
response to brassinosteroid (GO:0009741)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a brassinosteroid stimulus.
Synonyms: response to brassinosteroid stimulus
brassinosteroid mediated signaling pathway (GO:0009742)
Namespace: biological_process
Definition: The series of molecular signals mediated by the detection of brassinosteroid.
Synonyms: brassinosteroid mediated signalling
response to carbohydrate (GO:0009743)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a carbohydrate stimulus.
Synonyms: response to carbohydrate stimulus
response to sucrose (GO:0009744)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sucrose stimulus.
Synonyms: response to sucrose stimulus
sucrose mediated signaling (GO:0009745)
Namespace: biological_process
Definition: The series of molecular signals mediated by the detection of sucrose.
Synonyms: sucrose mediated signalling
response to hexose (GO:0009746)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hexose stimulus.
Synonyms: response to hexose stimulus
hexokinase-dependent signaling (GO:0009747)
Namespace: biological_process
Definition: The series of molecular signals mediated by hexose and dependent on the detection of hexokinase.
Synonyms: hexokinase-dependent signalling
hexokinase-independent signaling (GO:0009748)
Namespace: biological_process
Definition: The series of molecular signals mediated by hexose and independent of hexokinase.
Synonyms: hexokinase-independent signalling
response to glucose (GO:0009749)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus.
Synonyms: response to glucose stimulus
response to fructose (GO:0009750)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fructose stimulus.
Synonyms: response to fructose stimulus
response to salicylic acid (GO:0009751)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a salicylic acid stimulus.
Synonyms: response to salicylate; response to salicylic acid stimulus
detection of salicylic acid stimulus (GO:0009752)
Namespace: biological_process
Definition: The series of events in which a salicylic acid stimulus is received by a cell and converted into a molecular signal.
Synonyms: perception of salicylic acid stimulus
response to jasmonic acid (GO:0009753)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a jasmonic acid stimulus.
Synonyms: response to jasmonic acid stimulus
detection of jasmonic acid stimulus (GO:0009754)
Namespace: biological_process
Definition: The series of events in which a jasmonic acid stimulus is received by a cell and converted into a molecular signal. Series of events required for a jasmonic acid stimulus to be detected and converted to a signal molecule.
Synonyms: perception of jasmonic acid stimulus
hormone-mediated signaling pathway (GO:0009755)
Namespace: biological_process
Definition: The series of molecular signals mediated by the detection of a hormone.
Synonyms: hormone mediated signalling
carbohydrate mediated signaling (GO:0009756)
Namespace: biological_process
Definition: The series of molecular signals mediated by the detection of carbohydrate.
Synonyms: carbohydrate mediated signalling
hexose mediated signaling (GO:0009757)
Namespace: biological_process
Definition: The series of molecular signals mediated by the detection of hexose.
Synonyms: hexose mediated signalling
carbohydrate utilization (GO:0009758)
Namespace: biological_process
Definition: A series of processes that forms an integrated mechanism by which a cell or an organism detects the depletion of primary carbohydrate sources,usually glucose, and then activates genes to scavenge the last traces of the primary carbohydrate source and to transport and metabolize alternate carbohydrate sources. The utilization process begins when the cell or organism detects carbohydrate levels, includes the activation of genes whose products detect, transport or metabolize carbohydrates, and ends when the carbohydrate is incorporated into the cell or organism's metabolism.
Synonyms: sugar utilization
indole glucosinolate biosynthetic process (GO:0009759)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of indole glucosinolates, sulfur-containing compounds that have a common structure linked to an R group derived from tryptophan.
Synonyms: indole glucosinolate anabolism; indole glucosinolate biosynthesis; indole glucosinolate formation; indole glucosinolate synthesis
C4 photosynthesis (GO:0009760)
Namespace: biological_process
Definition: The combination of atmospheric CO2 with a 3-carbon molecule phosphoenol pyruvate (PEP) in the mesophyll cells to make a 4-carbon acid which is immediately converted to malic acid. The malic acid is then passed across to the bundle sheath cells where it is broken down again to pyruvic acid and CO2. The acid is passed back to the mesophyll cells to be used again, while the CO2 is fed into the reductive pentose-phosphate cycle (Calvin cycle) and converted into sugar and starch.
CAM photosynthesis (GO:0009761)
Namespace: biological_process
Definition: The combination of atmospheric CO2 with a 3-carbon molecule phosphoenol pyruvate (PEP) to make malic acid. The malic acid is then passed into the vacuole where it is stored until daylight, when it is shuttled back out to be used as a substrate in the light reaction of photosynthesis.
NAD-malic enzyme C4 photosynthesis (GO:0009763)
Namespace: biological_process
Definition: The process of C4 photosynthesis, as it occurs in plants in which the enzyme decarboxylating C4 acids in the bundle sheath is NAD-malic enzyme.
PEP carboxykinase C4 photosynthesis (GO:0009764)
Namespace: biological_process
Definition: The process of C4 photosynthesis, as it occurs in plants in which the enzyme decarboxylating C4 acids in the bundle sheath is phosphoenolpyruvate carboxykinase (PEPCK).
photosynthesis, light harvesting (GO:0009765)
Namespace: biological_process
Definition: Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers.
Synonyms: energy dissipation
obsolete primary charge separation (GO:0009766)
Namespace: biological_process
Definition: OBSOLETE. In the photosynthetic reaction centers, primary charge separation is initiated by the excitation of a molecule followed by the transfer of an electron to an electron acceptor molecule following energy transfer from light harvesting complexes.
Comment: This term was obsoleted because it represents a mechanism, and is outside the scope of GO.
photosynthetic electron transport chain (GO:0009767)
Namespace: biological_process
Definition: A process, occurring as part of photosynthesis, in which light provides the energy for a series of electron carriers to operate together to transfer electrons and generate a transmembrane electrochemical gradient.
Synonyms: electron carrier, chlorophyll electron transport system; photosynthetic electron transport in cytochrome b6/f; photosynthetic electron transport in plastocyanin; photosynthetic electron transport in plastoquinone
photosynthesis, light harvesting in photosystem I (GO:0009768)
Namespace: biological_process
Definition: After a photon of light is absorbed by one of the many chlorophyll molecules, in one of the light-harvesting complexes of an antenna on photosystem I, some of the absorbed energy is transferred to the pair of chlorophyll molecules in the reaction center.
photosynthesis, light harvesting in photosystem II (GO:0009769)
Namespace: biological_process
Definition: After a photon of light is absorbed by one of the many chlorophyll molecules, in one of the light-harvesting complexes of an antenna on photosystem II, some of the absorbed energy is transferred to the pair of chlorophyll molecules in the reaction center.
obsolete primary charge separation in photosystem I (GO:0009770)
Namespace: biological_process
Definition: OBSOLETE. Energized reaction-center P700 chlorophylls on photosystem I donate an electron to a loosely bound Quinone acceptor molecule X, on the stromal surface of the thylakoid membrane. The result is charge separation; a negative charge on the stromal side of the thylakoid membrane and a positive charge on the luminal side.
Comment: This term was obsoleted because it represents a mechanism, and is outside the scope of GO.
obsolete primary charge separation in photosystem II (GO:0009771)
Namespace: biological_process
Definition: OBSOLETE. Energized reaction-center P680 chlorophylls on photosystem II donate an electron to a loosely bound acceptor molecule, the quinone Q, on the stromal surface of the thylakoid membrane. The result is charge separation; a negative charge on the stromal side of the thylakoid membrane and a positive charge on the luminal side.
Comment: This term was obsoleted because it represents a mechanism, and is outside the scope of GO.
photosynthetic electron transport in photosystem II (GO:0009772)
Namespace: biological_process
Definition: A photosynthetic electron transport chain in which electrons move from the primary electron acceptor (Quinone, Q) through a chain of electron transport molecules in the thylakoid membrane until they reach the ultimate electron acceptor of Photosystem II, which is plastocyanin (PC). The electron is then passed to the P700 chlorophyll a molecules of the reaction centre of photosystem I.
photosynthetic electron transport in photosystem I (GO:0009773)
Namespace: biological_process
Definition: A photosynthetic electron transport chain in which electrons move from the primary electron acceptor (Quinone, X) through a chain of electron transport molecules in the thylakoid membrane until they reach ferredoxin which passes the electron to the ultimate electron acceptor; NADP.
photosynthetic phosphorylation (GO:0009777)
Namespace: biological_process
Definition: Any metabolic process in which photosynthetic organisms use light energy to convert ADP to ATP without the concomitant reduction of dioxygen (O2) to water that occurs in phosphorylation.
Synonyms: photosynthetic ATP synthesis
cyclic photosynthetic phosphorylation (GO:0009778)
Namespace: biological_process
Definition: A photosynthetic phosphorylation process in which ATP synthesis is driven by a proton gradient generated across the thylakoid membrane. Involves only photosystem I.
noncyclic photosynthetic phosphorylation (GO:0009779)
Namespace: biological_process
Definition: A photosynthetic phosphorylation process in which ATP synthesis is linked to the transport of electrons from water to NADP+ with the production of NADPH and dioxygen (O2). Involves photosystem I and photosystem II.
photosynthetic NADP+ reduction (GO:0009780)
Namespace: biological_process
Definition: An NADPH regeneration process that contributes to the light reactions of photosynthesis. The light reactions of photosynthesis use energy from photons to generate high-energy electrons. These electrons are used directly to reduce NADP+ to NADPH. NADPH is a relatively stable molecule and can pass on its hydrogen atom to other molecules in chemical reactions.
obsolete photosynthetic water oxidation (GO:0009781)
Namespace: biological_process
Definition: OBSOLETE. Processes by which a molecule of water is oxidized during photosynthesis. P680+, the photochemically oxidized reaction-center chlorophyll of PSII, is a strong biological oxidant. The reduction potential of P680+ is more positive than that of water, and thus it can oxidize water to give O2 and H+ ions. The oxygen escapes as a gas while the H+ ions remain in solution inside the thylakoid vesicle.
Synonyms: photosynthetic water oxidation
Comment: This term was made obsolete because it represents a molecular function.
photosystem I antenna complex (GO:0009782)
Namespace: cellular_component
Definition: The antenna complex of photosystem I. A photosystem has two closely linked components, an antenna containing light-absorbing pigments and a reaction center. Each antenna contains one or more light-harvesting complexes (LHCs).
photosystem II antenna complex (GO:0009783)
Namespace: cellular_component
Definition: The antenna complex of photosystem II. A photosystem has two closely linked components, an antenna containing light-absorbing pigments and a reaction center. Each antenna contains one or more light-harvesting complexes (LHCs).
transmembrane receptor histidine kinase activity (GO:0009784)
Namespace: molecular_function
Definition: Combining with a signal and transmitting the signal from one side of a membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP + a protein-L-histidine = ADP + a protein-L-histidine phosphate.
blue light signaling pathway (GO:0009785)
Namespace: biological_process
Definition: The series of molecular signals initiated upon sensing of blue light by photoreceptor molecule, at a wavelength between 400nm and 470nm.
Synonyms: blue light signalling pathway
regulation of asymmetric cell division (GO:0009786)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of asymmetric cell division.
regulation of abscisic acid-activated signaling pathway (GO:0009787)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of abscisic acid (ABA) signaling.
Synonyms: regulation of abscisic acid mediated signaling pathway; regulation of abscisic acid mediated signalling
negative regulation of abscisic acid-activated signaling pathway (GO:0009788)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of abscisic acid (ABA) signaling.
Synonyms: down regulation of abscisic acid mediated signaling; down-regulation of abscisic acid mediated signaling; downregulation of abscisic acid mediated signaling; inhibition of abscisic acid mediated signaling; negative regulation of abscisic acid mediated signaling pathway; negative regulation of abscisic acid mediated signalling
positive regulation of abscisic acid-activated signaling pathway (GO:0009789)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of abscisic acid (ABA) signaling.
Synonyms: activation of abscisic acid mediated signaling; positive regulation of abscisic acid mediated signaling pathway; positive regulation of abscisic acid mediated signalling; stimulation of abscisic acid mediated signaling; up regulation of abscisic acid mediated signaling; up-regulation of abscisic acid mediated signaling; upregulation of abscisic acid mediated signaling
embryo development (GO:0009790)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant.
Synonyms: embryogenesis; embryogenesis and morphogenesis; embryonal development
post-embryonic development (GO:0009791)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development.
embryo development ending in birth or egg hatching (GO:0009792)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of an embryo over time, from zygote formation until the end of the embryonic life stage. The end of the embryonic life stage is organism-specific and may be somewhat arbitrary; for mammals it is usually considered to be birth, for insects the hatching of the first instar larva from the eggshell.
Synonyms: embryogenesis