LiteFold/GO huggingface dataset:
secondary growth (GO:0080117)
Namespace: biological_process
Definition: Lateral growth of a plant axis (shoot axis or root) that is an increase in thickness resulting from formation of secondary vascular tissues by the vascular cambium.
Synonyms: cambial secondary growth
Comment: Occurs in vascular plants, including gymnosperms and most dicotyledons. Commonly supplemented by activity of the cork cambium or phellogen (PO:0005599). Monocotyledons do not have secondary growth, but may undergo primary thickening (GO:0080192) or secondary thickening (GO:0080191), which can give the appearance of secondary growth. Primary and secondary growth can occur simultaneously in the same organism.
brassinosteroid sulfotransferase activity (GO:0080118)
Namespace: molecular_function
Definition: Catalysis of the reaction: a brassinosteroid + 3'-phosphoadenosine-5'-phosphosulfate = sulfated brassinosteroid + adenosine-3',5'-diphosphate. This reaction is the transfer of a sulfate group to the hydroxyl group of a brassinosteroid acceptor, producing the sulfated brassinosteroid derivative.
ER body organization (GO:0080119)
Namespace: biological_process
Definition: A process that is carried out at the cellular level which results in the formation of ER (endoplasmic reticulum) body. ER body is a compartment found in plant cells that is derived from the ER. The structures have a characteristic shape and size (10 mm long and 0.5 mm wide) and are surrounded with ribosomes. They have been found in Arabidopsis thaliana and related Brassicaceae species.
Synonyms: endoplasmic reticulum body organization; endoplasmic reticulum body organization and biogenesis; ER body organisation; ER body organization and biogenesis
CAAX-box protein maturation (GO:0080120)
Namespace: biological_process
Definition: A series of specific posttranslational modifications to the CAAX box region of CAAX box proteins. CAAX box proteins are eukaryotic proteins that contain a CAAX motif where the C is a cysteine, the two A residues are aliphatic amino acids and the X can be one of several amino acids. The CAAX-box proteins undergo three sequential, enzymatic, post-translational modifications essential to their targeting: First, the proteins are prenylated by one of two prenyltransferases called farnesyltransferase and geranylgeranyltransferase-I. Prenylation results in the covalent attachment of either farnesyl or geranylgeranyl isoprenoid groups to the cysteine in the CAAX box motif. Prenylation is followed by proteolytic removal of the last three amino acids of the protein (AAX). Finally, the newly exposed carboxylate group of the isoprenylcysteine is methylated by an ER-associated prenyl-dependent carboxylmethyltransferase.
Synonyms: CAAX-box protein processing; farnesylated protein maturation
AMP transmembrane transporter activity (GO:0080122)
Namespace: molecular_function
Definition: Enables the transfer of AMP, adenosine monophosphate, from one side of a membrane to the other.
Synonyms: adenosine monophosphate transmembrane transporter activity
jasmonoyl-L-amino acid ligase activity (GO:0080123)
Namespace: molecular_function
Definition: Catalysis of the reaction: a jasmonate + an L-alpha-amino acid + ATP = a jasmonyl-L-amino acid + AMP + diphosphate + H+. In Arabidopsis, isoleucine is the principal amino acid that conjugates with JA to form JA (JA-Ile). Other amino acid can be conjugated with JA such as valine, leucine, and phenylalanine.
Synonyms: ja-amino synthetase activity; jasmonate-amido synthetase activity; jasmonate-amino acid conjugate synthetase activity; jasmonate-amino acid synthetase activity; jasmonate-amino synthetase activity; jasmonate:amino acid synthetase activity; jasmonic acid-amino synthetase activity; jasmonyl-amino synthetase activity
pheophytinase activity (GO:0080124)
Namespace: molecular_function
Definition: Catalysis of the reaction: pheophytin + H2O = phytol + pheophorbide.
Synonyms: pheophytin pheophorbide hydrolase activity
obsolete multicellular structure septum development (GO:0080125)
Namespace: biological_process
Definition: OBSOLETE. The process whose specific outcome is the progression of the multicellular structure septum over time, from its formation to the mature structure. The multicellular structure septum is the thin partition or membrane that divides a cavity or a mass of tissue.
Comment: This term was made obsolete because it is not a useful grouping term.
ovary septum development (GO:0080126)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the ovary septum over time, from its formation to the mature structure. The ovary septum is the thin partition that divides the ovary, the basal portion of a carpel or group of fused carpels, that encloses the ovule(s).
fruit septum development (GO:0080127)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the fruit septum over time, from its formation to the mature structure. The fruit septum is a thin partition or membrane that divides a cavity or a mass of tissue in the fruit.
anther septum development (GO:0080128)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the anther septum over time, from its formation to the mature structure. The anther septum is a thin partition or stretch of cells that are present in the anther dehiscence zone.
proteasome core complex assembly (GO:0080129)
Namespace: biological_process
Definition: The aggregation, arrangement and bonding together of a mature, active 20S proteasome core particle complex that does not contain any regulatory particles.
Synonyms: 20S proteasome assembly
L-phenylalanine:2-oxoglutarate transaminase activity (GO:0080130)
Namespace: molecular_function
Definition: Catalysis of the reaction: L-phenylalanine + 2-oxoglutarate = 3-phenylpyruvate + L-glutamate.
Synonyms: L-phenylalanine-2-oxoglutarate transaminase activity; L-phenylalanine:2-oxoglutarate aminotransferase activity; L-phenylalanine:alpha-ketoglutarate aminotransferase activity
hydroxyjasmonate sulfotransferase activity (GO:0080131)
Namespace: molecular_function
Definition: Catalysis of the reaction: a hydroxyjasmonate + 3'-phosphoadenosine-5'-phosphosulfate = a hydroxyjasmonate sulfate + adenosine-3',5'-diphosphate.
Synonyms: 11-hydroxyjasmonate sulfotransferase activity; 11-hydroxyjasmonic acid sulfotransferase activity; 11-OHJA sulfotransferase activity; 12-hydroxyjasmonate sulfotransferase activity; 12-hydroxyjasmonic acid sulfotransferase activity; 12-OHJA sulfotransferase activity; hydroxyjasmonic acid sulfotransferase activity; OHJA sulfotransferase activity
fatty acid 2-hydroxylase activity (GO:0080132)
Namespace: molecular_function
Definition: Catalysis of the hydroxylation of the C-2 position in a fatty acid. The 2-hydroxylation may occur on free fatty acids or within the fatty acyl chain of a sphingolipid.
Synonyms: fatty acid alpha-hydroxylase activity
midchain alkane hydroxylase activity (GO:0080133)
Namespace: molecular_function
Definition: Catalysis of the conversion of an alkane to a secondary alcohol.
regulation of response to stress (GO:0080134)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of a response to stress. Response to stress is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
regulation of cellular response to stress (GO:0080135)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of a cellular response to stress. Cellular response to stress is a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
priming of cellular response to stress (GO:0080136)
Namespace: biological_process
Definition: The process that enables cells to respond in a more rapid and robust manner than nonprimed cells to much lower levels of a stimulus indicating the organism is under stress.
Synonyms: priming of response to stress; priming of stress response
borate efflux transmembrane transporter activity (GO:0080139)
Namespace: molecular_function
Definition: Enables the transfer of borate from the inside of the cell to the outside of the cell across a membrane.
Synonyms: boron efflux transmembrane transporter activity
regulation of jasmonic acid metabolic process (GO:0080140)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving jasmonic acid.
regulation of jasmonic acid biosynthetic process (GO:0080141)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of jasmonic acid.
regulation of salicylic acid biosynthetic process (GO:0080142)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of salicylic acid.
regulation of amino acid export (GO:0080143)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of amino acid export. Amino acid export is the directed movement of amino acids out of a cell or organelle.
intracellular amino acid homeostasis (GO:0080144)
Namespace: biological_process
Definition: A homeostatic process involved in the maintenance of a steady state level of amino acids within a cell.
Synonyms: amino acid homeostasis; cellular amino acid homeostasis
intracellular cysteine homeostasis (GO:0080145)
Namespace: biological_process
Definition: A homeostatic process involved in the maintenance of a steady state level of cysteine within a cell.
Synonyms: cellular cysteine homeostasis; cysteine homeostasis
L-cysteine desulfhydrase activity (GO:0080146)
Namespace: molecular_function
Definition: Catalysis of the reaction: L-cysteine + H2O = hydrogen sulfide + pyruvate + NH4+ + H+.
root hair cell development (GO:0080147)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of a root hair cell over time, from its formation to the mature state.
negative regulation of response to water deprivation (GO:0080148)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of a response to water deprivation. Response to water deprivation is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water.
sucrose induced translational repression (GO:0080149)
Namespace: biological_process
Definition: Any process that stops, prevents or reduces the rate of translation as a result of increase in sucrose level.
Synonyms: negative regulation of translation in response to sucrose
S-adenosyl-L-methionine:benzoic acid carboxyl methyl transferase activity (GO:0080150)
Namespace: molecular_function
Definition: Catalysis of the reaction: benzoate + S-adenosyl-L-methionine = methylbenzoate + S-adenosyl-L-homocysteine.
Synonyms: S-adenosyl-L-methionine:benzoate carboxyl methyltransferase activity
positive regulation of salicylic acid mediated signaling pathway (GO:0080151)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of salicylic acid mediated signal transduction.
Synonyms: positive regulation of salicylic acid mediated signalling pathway
negative regulation of reductive pentose-phosphate cycle (GO:0080153)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of the reductive pentose-phosphate cycle.
Synonyms: negative regulation of C3 photosynthesis; negative regulation of Calvin cycle
regulation of fertilization (GO:0080154)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency or extent of fertilization. Fertilization is the union of gametes of opposite sexes during the process of sexual reproduction to form a zygote. It involves the fusion of the gametic nuclei (karyogamy) and cytoplasm (plasmogamy).
regulation of double fertilization forming a zygote and endosperm (GO:0080155)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency or extent of double fertilization forming a zygote and endosperm. Double fertilization forming a zygote and endosperm is a type of fertilization where one of the two sperm nuclei from the pollen tube fuses with the egg nucleus to form a 2n zygote, and the other fuses with the two polar nuclei to form the 3n primary endosperm nucleus and then develops into the endosperm. The ploidy level of the 2n zygote and 3n primary endosperm nucleus is determined by the ploidy level of the parents involved. An example of this component is found in Arabidopsis thaliana.
mitochondrial mRNA modification (GO:0080156)
Namespace: biological_process
Definition: The covalent alteration within the mitochondrion of one or more nucleotides within an mRNA to produce an mRNA molecule with a sequence that differs from that coded genetically.
Synonyms: mitochondrial mRNA editing; mitochondrial RNA editing
regulation of plant-type cell wall organization or biogenesis (GO:0080157)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving plant-type cell wall organization or biogenesis. Plant-type cell wall organization or biogenesis is a process that results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a cellulose- and pectin-containing cell wall.
Synonyms: regulation of plant-type cell wall organisation or biogenesis
obsolete chloroplast ribulose bisphosphate carboxylase complex biogenesis (GO:0080158)
Namespace: biological_process
Definition: OBSOLETE. A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a chloroplast ribulose bisphosphate carboxylase (RubisCO) complex. Includes the synthesis of the constituent protein molecules, and those protein modifications that are involved in synthesis or assembly of the complex.
Comment: The reason for obsoletion is that 'biogenesis' as related to a protein is translation, and there is no indication that the members of these complexes are synthesized in a particular way. Historically biogenesis terms were created for some processes when the level of a molecule was changed by an unknown mechanism, for instance transcription, translation, assembly etc. This is now considered too indirect for annotation.
zygote elongation (GO:0080159)
Namespace: biological_process
Definition: The process in which the zygote irreversibly increases in size in one dimension after fertilization. An example of such a process is found in Arabidopsis thaliana.
selenate transport (GO:0080160)
Namespace: biological_process
Definition: The directed movement of selenate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
auxin transmembrane transporter activity (GO:0080161)
Namespace: molecular_function
Definition: Enables the transfer of auxins from one side of a membrane to the other. Auxins are plant hormones that regulate aspects of plant growth.
endoplasmic reticulum to cytosol auxin transport (GO:0080162)
Namespace: biological_process
Definition: The directed movement of auxins from endoplasmic reticulum to cytosol.
Synonyms: intracellular auxin transport
obsolete regulation of protein serine/threonine phosphatase activity (GO:0080163)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of protein serine/threonine phosphatase activity: catalysis of the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate.
Synonyms: regulation of protein phosphatase type 2c activity
Comment: The reason for obsoletion is that this term represents a single-step process (regulation of MF).
regulation of nitric oxide metabolic process (GO:0080164)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving nitric oxide, nitrogen monoxide (NO), a colorless gas only slightly soluble in water.
callose deposition in phloem sieve plate (GO:0080165)
Namespace: biological_process
Definition: Any process in which callose is transported to, and/or maintained in, phloem sieve plate. Callose is a linear 1,3-beta-d-glucan formed from UDP-glucose and is found in certain plant cell walls.
stomium development (GO:0080166)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the stomium over time, from its formation to the mature structure. A stomium is a fissure or pore in the anther lobe through which the pollen is released.
response to karrikin (GO:0080167)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a karrikin stimulus. Karrikins are signaling molecules in smoke from burning vegetation that trigger seed germination for many angiosperms (flowering plants).
cellular response to boron-containing substance deprivation (GO:0080169)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of boron obtained from boron-containing substances.
Synonyms: cellular response to boron deprivation; cellular response to boron starvation
hydrogen peroxide transmembrane transport (GO:0080170)
Namespace: biological_process
Definition: The process in which H2O2 is transported across a membrane.
Synonyms: hydrogen peroxide membrane transport
Comment: Note that this term is not intended for use in annotating lateral movement within membranes.
lytic vacuole organization (GO:0080171)
Namespace: biological_process
Definition: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a lytic vacuole.
Synonyms: lytic vacuolar assembly; lytic vacuole biogenesis; lytic vacuole organisation; lytic vacuole organization and biogenesis
male-female gamete recognition during double fertilization forming a zygote and endosperm (GO:0080173)
Namespace: biological_process
Definition: The initial contact step made between the male gamete and the female gamete during double fertilization forming a zygote and endosperm. An example can be found in Arabidopsis thaliana.
Synonyms: gamete recognition; male-female gamete recognition
phragmoplast microtubule organization (GO:0080175)
Namespace: biological_process
Definition: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of structures formed of microtubules and associated proteins in phragmoplast, a plant cell specific structure that forms during late cytokinesis. Phragmoplast serves as a scaffold for cell plate assembly and subsequent formation of a new cell wall separating the two daughter cells.
Synonyms: phragmoplast microtubule cytoskeleton organization; phragmoplast microtubule organisation
xyloglucan 1,6-alpha-xylosidase activity (GO:0080176)
Namespace: molecular_function
Definition: Catalysis of the hydrolysis of xyloglucan side chains so as to remove unsubstituted D-xylose residues attached to the glucose located at the non-reducing terminus.
plastoglobule organization (GO:0080177)
Namespace: biological_process
Definition: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the plastoglobule. Plastoglobule is a lipoprotein particle present in chloroplasts. They are rich in non-polar lipids (triglycerides, esters) as well as in prenylquinones, plastoquinone and tocopherols. Plastoglobules are often associated with thylakoid membranes, suggesting an exchange of lipids with thylakoids.
Synonyms: plastoglobule organisation
5-carbamoylmethyl uridine residue modification (GO:0080178)
Namespace: biological_process
Definition: The chemical reactions and pathways involving the addition of a 5-carbamoylmethyl group to a uridine residue in RNA.
Synonyms: 5-carbamoylmethyluridine metabolic process
1-methylguanosine metabolic process (GO:0080179)
Namespace: biological_process
Definition: The chemical reactions and pathways involving 1-methylguanosine.
lateral root branching (GO:0080181)
Namespace: biological_process
Definition: Any process involved in the formation of branches in lateral roots.
obsolete histone H3-K4 trimethylation (GO:0080182)
Namespace: biological_process
Definition: OBSOLETE. The modification of histone H3 by addition of three methyl groups to lysine at position 4 of the histone.
Comment: This term was obsoleted because it represents a molecular function.
response to photooxidative stress (GO:0080183)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as the result of a photooxidative stress, the light-dependent generation of active oxygen species. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism.
response to phenylpropanoid (GO:0080184)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as the result of a phenylpropanoid stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism. A phenylpropanoid is any of secondary metabolites with structures based on a phenylpropane skeleton. The class includes phenylpropanoid esters, flavonoids, anthocyanins, coumarins and many small phenolic molecules. Phenylpropanoids are also precursors of lignin.