LiteFold/GO huggingface dataset:
obsolete suppression by virus of host apoptotic process (GO:0019050)
Namespace: biological_process
Definition: OBSOLETE. A process in which a virus gene product suppresses host apoptosis, leading to a decrease in the frequency, rate or extent of apoptosis in the host cell.
Synonyms: inhibition of host caspases by virus; negative regulation by virus of host apoptosis; negative regulation of apoptosis by virus; suppression by virus of host apoptosis; suppression by virus of host cysteine-type endopeptidase activity involved in apoptotic process; suppression of apoptosis in host by virus
Comment: This term was obsoleted because it is too specific; consider 'symbiont-mediated suppression of host apoptosis' ; GO0033668.
obsolete induction by virus of host apoptotic process (GO:0019051)
Namespace: biological_process
Definition: OBSOLETE. A process in which a viral gene product activates host apoptosis, leading to an increase in the frequency, rate or extent of apoptosis in the host cell.
Synonyms: activation by virus of host apoptosis; activation by virus of host apoptotic programmed cell death; activation of apoptosis in host by virus; activation of host caspases by virus; induction by virus of host apoptosis; induction by virus of host apoptotic programmed cell death; induction by virus of host caspase activity; induction by virus of host cysteine-type endopeptidase activity involved in apoptotic process; induction of apoptosis in host by virus; positive regulation of apoptosis by virus; positive regulation of apoptotic process by virus
Comment: This term was obsoleted because it is too specific; consider symbiont-mediated activation of host apoptosis ; GO:0052151.
obsolete modulation by virus of host cellular process (GO:0019054)
Namespace: biological_process
Definition: OBSOLETE. The process in which a virus effects a change in the processes and activities of its host organism.
Synonyms: modification by virus of host cellular process; modulation by virus of host process; modulation of cellular process in host by virus; regulation by virus of host cellular process; regulation of cellular process in host by virus; regulation of host cellular process by virus; viral host cell process manipulation
Comment: This term has been replaced by the more general symbiont-mediated perturbation of host cellular process ; GO:0044068.
obsolete perturbation by virus of host cell cycle regulation (GO:0019055)
Namespace: biological_process
Definition: OBSOLETE. Interactions, directly with the host cell macromolecular machinery, to allow a virus to modulate the rate of the host cell cycle to facilitate virus replication.
Synonyms: modification by virus of host cell cycle regulation; viral perturbation of cell cycle regulation
Comment: This term was obsoleted because it represents the same process as symbiont-mediated perturbation of host cell cycle progression ; GO:0044071.
symbiont-mediated perturbation of host translation (GO:0019057)
Namespace: biological_process
Definition: A process in which a symbiont alters or subverts translation of mRNA into protein in its host. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Synonyms: host cell protein synthesis shutoff; modification by virus of host cell mRNA translation; modulation by virus of host translation; modulation of host translation by virus; regulation of host mRNA translation; regulation of host translation; viral perturbation of host cell mRNA translation
viral life cycle (GO:0019058)
Namespace: biological_process
Definition: A set of processes which all viruses follow to ensure survival; includes attachment and entry of the virus particle, decoding of genome information, translation of viral mRNA by host ribosomes, genome replication, and assembly and release of viral particles containing the genome.
Synonyms: lytic viral life cycle; viral assembly, maturation, egress, and release; viral infectious cycle; viral replication
obsolete initiation of viral infection (GO:0019059)
Namespace: biological_process
Definition: OBSOLETE. The set of processes involved in the start of virus infection of cells.
Synonyms: initiation of viral infection
Comment: This term was made obsolete because it is ambiguous, and more specific terms have been created.
intracellular transport of viral protein in host cell (GO:0019060)
Namespace: biological_process
Definition: The directed movement of a viral protein within the host cell.
Synonyms: cytoplasmic viral capsid transport; intracellular transport of viral capsid in host cell; intracellular transport of viral capsid protein in host cell; intracellular transport of viral proteins in host cell; intracellular viral capsid transport; intracellular viral protein transport; nuclear viral capsid transport; viral capsid transport in host cell cytoplasm; viral capsid transport in host cell nucleus
Comment: This term is for annotation of proteins responsible for the movement of individual viral proteins, rather than the whole viral particle.
virion attachment to host cell (GO:0019062)
Namespace: biological_process
Definition: The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
Synonyms: viral absorption; viral attachment to host cell; virion attachment to host cell surface receptor
fusion of virus membrane with host plasma membrane (GO:0019064)
Namespace: biological_process
Definition: Fusion of a viral membrane with the host cell membrane during viral entry. Results in release of the virion contents into the cytoplasm.
Synonyms: viral entry into host cell via membrane fusion with the plasma membrane; viral envelope fusion; viral envelope fusion with host cell membrane; viral envelope fusion with host membrane; viral envelope fusion with host plasma membrane; viral penetration via membrane fusion; viral-cell fusion molecule activity
receptor-mediated endocytosis of virus by host cell (GO:0019065)
Namespace: biological_process
Definition: Any receptor-mediated endocytosis that is involved in the uptake of a virus into a host cell; successive instances of virus endocytosis result in the accumulation of virus particles within the cell.
Synonyms: receptor mediated endocytosis by host of virus particle; receptor mediated endocytosis of virus by host; receptor mediated endocytosis of virus particle by host; receptor-mediated endocytosis of virus by host; viral entry into host cell via receptor-mediated endocytosis; viral receptor mediated endocytosis; virus receptor-mediated endocytosis by host
virion assembly (GO:0019068)
Namespace: biological_process
Definition: A late phase of the viral life cycle during which all the components necessary for the formation of a mature virion collect at a particular site in the cell and the basic structure of the virus particle is formed.
Synonyms: bacteriophage assembly; phage assembly; viral assembly; viral particle assembly; virion assembly and maintenance; virion organization; virus assembly; virus particle assembly
viral genome maturation (GO:0019070)
Namespace: biological_process
Definition: The processes involved in creating a mature, stable viral genome. Begins after genome replication with a newly synthesized nucleic acid and ends when the genome is ready to be packaged. Includes the addition of proteins to the newly synthesized genome, and DNA repair processes.
obsolete viral DNA cleavage involved in viral genome maturation (GO:0019071)
Namespace: biological_process
Definition: OBSOLETE. The cleavage of viral DNA into singular functional units.
Comment: The reason for obsoletion is that this term is pre-composed and should be represented as a GO-CAM model.
viral genome packaging (GO:0019072)
Namespace: biological_process
Definition: The encapsulation of the viral genome within the capsid.
viral DNA genome packaging (GO:0019073)
Namespace: biological_process
Definition: The packing of viral DNA into a capsid.
viral RNA genome packaging (GO:0019074)
Namespace: biological_process
Definition: The packaging of viral RNA (single-stranded or double-stranded) into a nucleocapsid.
obsolete lytic viral budding (GO:0019078)
Namespace: biological_process
Definition: OBSOLETE. A form of viral release in which the viral particles bud out through cellular membranes, resulting in cell lysis. It is also a form of viral envelopment.
Synonyms: lytic viral budding
Comment: This term was made obsolete because it does not appear to correspond to a real biological process.
viral genome replication (GO:0019079)
Namespace: biological_process
Definition: Any process involved directly in viral genome replication, including viral nucleotide metabolism.
Synonyms: sigma virus replication; viral replication
viral gene expression (GO:0019080)
Namespace: biological_process
Definition: A process by which a viral gene is converted into a mature gene product or products (proteins or RNA). This includes viral transcription, processing to produce a mature RNA product, and viral translation.
Synonyms: viral genome expression
viral translation (GO:0019081)
Namespace: biological_process
Definition: A process by which viral mRNA is translated into viral protein, using the host cellular machinery.
Synonyms: viral protein anabolism; viral protein biosynthesis; viral protein biosynthetic process; viral protein formation; viral protein synthesis
viral protein processing (GO:0019082)
Namespace: biological_process
Definition: Any protein maturation process achieved by the cleavage of a peptide bond or bonds within a viral protein.
viral transcription (GO:0019083)
Namespace: biological_process
Definition: The process by which a viral genome, or part of a viral genome, is transcribed within the host cell.
middle viral transcription (GO:0019084)
Namespace: biological_process
Definition: The viral transcription that takes place after early transcription in the viral life cycle, and which involves the transcription of genes required for replication.
Synonyms: (delayed) early viral mRNA transcription
early viral transcription (GO:0019085)
Namespace: biological_process
Definition: The first phase of viral transcription that occurs after entry of the virus into the host cell, but prior to viral genome replication. It involves the transcription of genes for non-structural proteins, and for lytic viruses, the early gene products are involved in establishing control over the host cell.
Synonyms: immediate early viral mRNA transcription
late viral transcription (GO:0019086)
Namespace: biological_process
Definition: The transcription of the final group of viral genes of the viral life cycle, following middle transcription, or where middle transcription doesn't occur, following early transcription. Involves the transcription of genes encoding structural proteins.
Synonyms: late viral mRNA transcription
symbiont-mediated transformation of host cell (GO:0019087)
Namespace: biological_process
Definition: A symbiont-induced cellular transformation resulting in immortalized cells, or cells capable of indefinite replication. Usually mediated by viruses.
Synonyms: host cell immortalization; host cell transformation; immortalization of host cell; immortalization of host cell by virus; transformation of host cell; transformation of host cell by virus; viral immortalization; viral transformation; viral transformation of host cell; virus-mediated transformation of host cell
obsolete transmission of virus (GO:0019089)
Namespace: biological_process
Definition: OBSOLETE. The transfer of virions in order to create new infection.
Synonyms: viral transmission
Comment: This term was obsoleted because it did not represent a specific process, but represented the life cycle of a virus.
mitochondrial rRNA export from mitochondrion (GO:0019090)
Namespace: biological_process
Definition: The process in which a rRNA, ribosomal ribonucleic acid, is transported from the mitochondrial matrix into the cytosol.
Synonyms: export of mitochondrial rRNA; mitochondrial rRNA export; mitochondrial rRNA export from mitochondria; mitochondrial rRNA export out of mitochondrion; mitochondrial rRNA transport from mitochondrion; mitochondrial rRNA, mitochondrial export
mitochondrial lrRNA export from mitochondrion (GO:0019091)
Namespace: biological_process
Definition: The process in which a lrRNA, large subunit ribosomal ribonucleic acid, is transported from the mitochondrial matrix into the cytosol.
Synonyms: export of mitochondrial lrRNA; mitochondrial lrRNA export; mitochondrial lrRNA export from mitochondria; mitochondrial lrRNA export out of mitochondrion; mitochondrial lrRNA transport from mitochondrion; mitochondrial lrRNA, mitochondrial export
mitochondrial srRNA export from mitochondrion (GO:0019092)
Namespace: biological_process
Definition: The process in which a srRNA, small subunit ribosomal ribonucleic acid, is transported from the mitochondrial matrix into the cytosol.
Synonyms: export of mitochondrial srRNA; mitochondrial srRNA export; mitochondrial srRNA export from mitochondria; mitochondrial srRNA export out of mitochondrion; mitochondrial srRNA transport from mitochondrion; mitochondrial srRNA, mitochondrial export
mitochondrial RNA localization (GO:0019093)
Namespace: biological_process
Definition: Any process in which mitochondrial RNA is transported to, or maintained in, a specific location.
Synonyms: establishment and maintenance of mitochondrial RNA localization; mitochondrial RNA localisation; mtRNA localization
pole plasm mRNA localization (GO:0019094)
Namespace: biological_process
Definition: Any process in which mRNA is transported to, or maintained in, the oocyte pole plasm. An example of this is found in Drosophila melanogaster.
Synonyms: establishment and maintenance of mRNA localization in pole plasm; establishment and maintenance of pole plasm mRNA localization; oocyte pole plasm mRNA localization; pole granule RNA localization; pole plasm mRNA localisation
pole plasm mitochondrial rRNA localization (GO:0019095)
Namespace: biological_process
Definition: Any process in which mitochondrial ribosomal RNA is transported to, or maintained in, the oocyte pole plasm. An example of this is found in Drosophila melanogaster.
Synonyms: establishment and maintenance of mitochondrial rRNA localization in pole plasm; oocyte pole plasm mitochondrial rRNA localization; pole plasm mitochondrial rRNA localisation
pole plasm mitochondrial lrRNA localization (GO:0019096)
Namespace: biological_process
Definition: Any process in which mitochondrial large ribosomal RNA is transported to, or maintained in, the oocyte pole plasm. An example of this is found in Drosophila melanogaster.
Synonyms: establishment and maintenance of mitochondrial lrRNA localization in pole plasm; oocyte pole plasm mitochondrial lrRNA localization; pole plasm mitochondrial lrRNA localisation
pole plasm mitochondrial srRNA localization (GO:0019097)
Namespace: biological_process
Definition: Any process in which mitochondrial small ribosomal RNA is transported to, or maintained in, the oocyte pole plasm. An example of this is found in Drosophila melanogaster.
Synonyms: establishment and maintenance of mitochondrial localization in pole plasm; oocyte pole plasm mitochondrial srRNA localization; pole plasm mitochondrial srRNA localisation
reproductive behavior (GO:0019098)
Namespace: biological_process
Definition: The specific behavior of an organism that is associated with reproduction.
Synonyms: multi-organism reproductive behavior; multicellular organism reproductive behavior; reproductive behavior in a multicellular organism; reproductive behaviour; single-organism reproductive behavior
female germ-line sex determination (GO:0019099)
Namespace: biological_process
Definition: The determination of sex and sexual phenotype in a female organism's germ line.
Synonyms: sex determination, female germ-line determination
male germ-line sex determination (GO:0019100)
Namespace: biological_process
Definition: The determination of sex and sexual phenotype in a male organism's germ line.
female somatic sex determination (GO:0019101)
Namespace: biological_process
Definition: The determination of sex and sexual phenotypes in a female organism's soma.
male somatic sex determination (GO:0019102)
Namespace: biological_process
Definition: The determination of sex and sexual phenotypes in a male organism's soma.
pyrimidine nucleotide binding (GO:0019103)
Namespace: molecular_function
Definition: Binding to a pyrimidine nucleotide, a pyrimidine nucleoside esterified with (ortho)phosphate.
DNA N-glycosylase activity (GO:0019104)
Namespace: molecular_function
Definition: Catalysis of the removal of damaged bases by cleaving the N-C1' glycosidic bond between the target damaged DNA base and the deoxyribose sugar. The reaction releases a free base and leaves an apurinic/apyrimidinic (AP) site.
Synonyms: DNA glycosylase activity; endonuclease VIII activity
myristoyltransferase activity (GO:0019107)
Namespace: molecular_function
Definition: Catalysis of the transfer of a myristoyl (CH3-[CH2]12-CO-) group to an acceptor molecule.
aryl-aldehyde dehydrogenase (NAD+) activity (GO:0019108)
Namespace: molecular_function
Definition: Catalysis of the reaction: an aromatic aldehyde + NAD+ + H2O = an aromatic acid + NADH + H+.
Synonyms: aryl-aldehyde dehydrogenase (NAD) activity; aryl-aldehyde:NAD+ oxidoreductase activity
obsolete phenanthrol glycosyltransferase activity (GO:0019112)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: phenanthrol + glucose = phenanthryl-beta-D-glucopyranoside + H2O.
Comment: This term was obsoleted because it represents a specific substrate.
obsolete catechol dioxygenase activity (GO:0019114)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: catechol + O2 = a muconate.
Comment: This term was obsoleted because it is an unnecessary grouping term.
obsolete benzaldehyde dehydrogenase [NAD(P)+] activity (GO:0019115)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: benzaldehyde + NAD(P)+ + H2O = benzoate + NAD(P)H + H+.
Comment: This term was obsoleted because it is an unnecessary grouping class.
obsolete hydroxy-nicotine oxidase activity (GO:0019116)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: 6-hydroxynicotine + H2O + O2 = 1-(6-hydroxypyrid-3-yl)-4-(methylamino)butan-1-one + hydrogen peroxide.
Comment: This term was obsoleted because it is an unnecessary grouping term.
obsolete dihydroxyfluorene dioxygenase activity (GO:0019117)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: a dihydroxyfluorene + O2 = the corresponding 2-hydroxy-4-(oxo-1,3-dihydro-2H-inden-ylidene) but-2-enoic acid.
Comment: This term was obsoleted because the substrate is not a natural product.
phenanthrene-epoxide hydrolase activity (GO:0019118)
Namespace: molecular_function
Definition: Catalysis of the reaction: a phenanthrene dioxide + H2O = a dihydrodiolphenanthrene.
phenanthrene-9,10-epoxide hydrolase activity (GO:0019119)
Namespace: molecular_function
Definition: Catalysis of the reaction: phenanthrene-9,10-oxide + H2O = trans-9,10-dihydrodiolphenanthrene.
hydrolase activity, acting on halide bonds, in C-halide compounds (GO:0019120)
Namespace: molecular_function
Definition: Catalysis of the hydrolysis of any halide bond in substances containing halogen atoms in organic linkage.
obsolete peptidoglycan-protein cross-linking via N6-mureinyl-L-lysine (GO:0019121)
Namespace: biological_process
Definition: OBSOLETE. The process of linking a protein to peptidoglycan via the epsilon amino group of lysine to the diaminopimelic acid of the peptidoglycan.
Comment: This term was obsoleted because it represents a molecular function.
obsolete peptidyl-D-alanine racemization (GO:0019122)
Namespace: biological_process
Definition: OBSOLETE. The formation of peptidyl-D-alanine, by either racemization or from peptidyl-L-serine.
Synonyms: alanine racemization
Comment: The reason for obsoletion is that this term represents a molecular function.
obsolete peptidyl-methionine racemization (GO:0019123)
Namespace: biological_process
Definition: OBSOLETE. The racemization of peptidyl-methionine.
Comment: This term was obsoleted because it represents a molecular function.
obsolete peptidyl-isoleucine racemization (GO:0019124)
Namespace: biological_process
Definition: OBSOLETE. The racemization of peptidyl-isoleucine.
Comment: This term was obsoleted because it represents a molecular function.
obsolete peptidyl-phenylalanine racemization (GO:0019125)
Namespace: biological_process
Definition: OBSOLETE. The racemization of peptidyl-phenylalanine.
Comment: This term was obsoleted because it represents a molecular function.
obsolete peptidyl-serine racemization (GO:0019126)
Namespace: biological_process
Definition: OBSOLETE. The racemization of peptidyl-serine.
Comment: This term was obsoleted because it represents a molecular function.
obsolete peptidyl-tryptophan racemization (GO:0019128)
Namespace: biological_process
Definition: OBSOLETE. The racemization of peptidyl-tryptophan.
Comment: This term was obsoleted because it represents a molecular function.
obsolete tripeptidyl-peptidase I activity (GO:0019131)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the release of an N-terminal tripeptide from a polypeptide; requires acid pH.
Synonyms: tripeptidyl aminopeptidase activity; tripeptidyl peptidase activity; tripeptidyl-peptidase I activity
Comment: This term was made obsolete because it represents a gene product.
obsolete C-terminal processing peptidase activity (GO:0019132)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the cleavage of peptides after specific recognition of a C-terminal tripeptide, Xaa-Yaa-Zaa, in which Xaa is preferably Ala or Leu, Yaa is preferably Ala or Tyr, and Zaa is preferably Ala. Cleavage is at a variable distance from the C-terminus; a typical cleavage is -Ala-Ala-Arg-Ala-Ala-Lys-Glu-Asn-Tyr-Ala-Leu-Ala-Ala.
Synonyms: C-terminal processing peptidase activity; CtpA gene product (Synechocystis sp.); photosystem II D1 protein processing peptidase; protease Re; tail-specific protease activity; Tsp protease
Comment: This term was made obsolete because it represents a gene product.
choline monooxygenase activity (GO:0019133)
Namespace: molecular_function
Definition: Catalysis of the reaction: choline + 2 reduced ferredoxin + O2 + 2 H+ = betaine aldehyde hydrate + 2 oxidized ferredoxin + H2O.
Synonyms: choline,reduced-ferredoxin:oxygen oxidoreductase activity
glucosamine-1-phosphate N-acetyltransferase activity (GO:0019134)
Namespace: molecular_function
Definition: Catalysis of the reaction: alpha-D-glucosamine 1-phosphate + acetyl-CoA = N-acetyl-alpha-D-glucosamine 1-phosphate + CoA + H+.
Synonyms: acetyl-CoA:alpha-D-glucosamine-1-phosphate N-acetyltransferase activity; acetyl-CoA:D-glucosamine-1-phosphate N-acetyltransferase activity
deoxyhypusine monooxygenase activity (GO:0019135)
Namespace: molecular_function
Definition: Catalysis of the reaction: protein N6-(4-aminobutyl)-L-lysine + donor-H2 + O2 = protein N6-((R)-4-amino-2-hydroxybutyl)-L-lysine + acceptor + H2O.
Synonyms: deoxyhypusine dioxygenase activity; deoxyhypusine hydroxylase activity; deoxyhypusine,hydrogen-donor:oxygen oxidoreductase (2-hydroxylating); DOHH activity
thioglucosidase activity (GO:0019137)
Namespace: molecular_function
Definition: Catalysis of the reaction: a thioglucoside + H2O = a thiol + a sugar.
Synonyms: myrosinase activity; sinigrase activity; sinigrinase activity; thioglucoside glucohydrolase activity
cytokinin dehydrogenase activity (GO:0019139)
Namespace: molecular_function
Definition: Catalysis of the reaction: N6-dimethylallyladenine + acceptor + H2O = adenine + 3-methylbut-2-enal + reduced electron acceptor.
Synonyms: 6-N-dimethylallyladenine:acceptor oxidoreductase activity; cytokinin oxidase activity; N6-dimethylallyladenine:(acceptor) oxidoreductase activity; N6-dimethylallyladenine:acceptor oxidoreductase activity
inositol 3-kinase activity (GO:0019140)
Namespace: molecular_function
Definition: Catalysis of the reaction: ATP + myo-inositol = ADP + 1D-myo-inositol 3-phosphate.
Synonyms: ATP:myo-inositol 1-phosphotransferase activity; inositol 1-kinase activity; inositol-1-kinase (phosphorylating); myo-inositol 1-kinase activity; myo-inositol 3-kinase activity; myoinositol kinase activity