LiteFold/GO huggingface dataset:
diestrus (GO:0060207)
Namespace: biological_process
Definition: The estrous cycle phase which is a period of sexual quiescence and represents the phase of the mature corpus luteum.
Comment: Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase. To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during).
proestrus (GO:0060208)
Namespace: biological_process
Definition: The estrous cycle phase in which there is heightened follicular activity.
Comment: Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase. To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during).
estrus (GO:0060209)
Namespace: biological_process
Definition: The estrous cycle phase in which a female is sexually receptive.
Synonyms: oestrus
Comment: Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase. To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during).
metestrus (GO:0060210)
Namespace: biological_process
Definition: The estrous cycle phase in which there is subsiding follicular function.
Comment: Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase. To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during).
regulation of nuclear-transcribed mRNA poly(A) tail shortening (GO:0060211)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of poly(A) tail shortening of a nuclear-transcribed mRNA. Poly(A) tail shortening is the decrease in length of the poly(A) tail of an mRNA from full length to an oligo(A) length.
Synonyms: regulation of 3' to 5' mRNA deadenylation; regulation of mRNA deadenylation; regulation of nuclear mRNA poly(A) tail shortening
negative regulation of nuclear-transcribed mRNA poly(A) tail shortening (GO:0060212)
Namespace: biological_process
Definition: Any process that decreases the frequency, rate or extent of poly(A) tail shortening of a nuclear-transcribed mRNA. Poly(A) tail shortening is the decrease in length of the poly(A) tail of an mRNA from full length to an oligo(A) length.
Synonyms: negative regulation of 3' to 5' mRNA deadenylation; negative regulation of mRNA deadenylation; negative regulation of nuclear mRNA poly(A) tail shortening
positive regulation of nuclear-transcribed mRNA poly(A) tail shortening (GO:0060213)
Namespace: biological_process
Definition: Any process that increases the frequency, rate or extent of poly(A) tail shortening of a nuclear-transcribed mRNA. Poly(A) tail shortening is the decrease in length of the poly(A) tail of an mRNA from full length to an oligo(A) length.
Synonyms: positive regulation of 3' to 5' mRNA deadenylation; positive regulation of mRNA deadenylation; positive regulation of nuclear mRNA poly(A) tail shortening
endocardium formation (GO:0060214)
Namespace: biological_process
Definition: Formation of the endocardium of the heart. The endocardium is an anatomical structure comprised of an endothelium and an extracellular matrix that forms the innermost layer of tissue of the heart, and lines the heart chambers.
primitive hemopoiesis (GO:0060215)
Namespace: biological_process
Definition: A first transient wave of blood cell production that, in vertebrates, gives rise to erythrocytes (red blood cells) and myeloid cells.
Synonyms: primitive haematopoiesis; primitive haemopoiesis; primitive hematopoiesis
definitive hemopoiesis (GO:0060216)
Namespace: biological_process
Definition: A second wave of blood cell production that, in vertebrates, generates long-term hemopoietic stem cells that continuously provide erythroid, myeloid and lymphoid lineages throughout adulthood.
Synonyms: definitive haematopoiesis; definitive haemopoiesis; definitive hematopoiesis
hemangioblast cell differentiation (GO:0060217)
Namespace: biological_process
Definition: The process in which a relatively unspecialized cell acquires the characteristics of a mature hemangioblast. Hemangioblasts are the proposed common precursor of blood and endothelial lineages.
hematopoietic stem cell differentiation (GO:0060218)
Namespace: biological_process
Definition: The process in which a relatively unspecialized cell acquires specialized features of a hematopoietic stem cell. A stem cell is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells.
Synonyms: haematopoietic stem cell differentiation; haemopoietic stem cell differentiation; hemopoietic stem cell differentiation
camera-type eye photoreceptor cell differentiation (GO:0060219)
Namespace: biological_process
Definition: The process in which a relatively unspecialized cell acquires the specialized features of a photoreceptor cell in a camera-type eye.
camera-type eye photoreceptor cell fate commitment (GO:0060220)
Namespace: biological_process
Definition: The process in which the developmental fate of a cell becomes restricted such that it will develop into a photoreceptor cell in a camera-type eye.
retinal rod cell differentiation (GO:0060221)
Namespace: biological_process
Definition: The process in which a relatively unspecialized cell acquires the specialized features of a retinal rod cell.
retinal rod cell fate commitment (GO:0060223)
Namespace: biological_process
Definition: The process in which the developmental fate of a cell becomes restricted such that it will develop into a retinal rod cell. A retinal rod cell is one of the two photoreceptor subtypes in a camera-type eye.
regulation of retinal rod cell fate commitment (GO:0060224)
Namespace: biological_process
Definition: Any process that modulates the process in which the developmental fate of a cell becomes restricted such that it will develop into a retinal rod cell. A retinal rod cell is one of the two photoreceptor subtypes in a camera-type eye.
negative regulation of retinal cone cell fate commitment (GO:0060226)
Namespace: biological_process
Definition: Any process that increases the process in which a cell becomes committed to a retinal cone cell fate. Retinal cone cell fate commitment is the process in which the developmental fate of a cell becomes restricted such that it will develop into a retinal cone cell.
obsolete Notch signaling pathway involved in camera-type eye photoreceptor fate commitment (GO:0060227)
Namespace: biological_process
Definition: OBSOLETE. The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell that contributes to the commitment of a precursor cell to a eye photoreceptor fate.
Synonyms: Notch signalling pathway involved in camera-type eye photoreceptor fate commitment
Comment: This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.
phosphatidylcholine-sterol O-acyltransferase activator activity (GO:0060228)
Namespace: molecular_function
Definition: Binds to and increases the activity of phosphatidylcholine-sterol O-acyltransferase.
Synonyms: LCAT activator activity
lipase activator activity (GO:0060229)
Namespace: molecular_function
Definition: Binds to and increases the activity of a lipase, an enzyme that catalyzes of the hydrolysis of a lipid.
lipoprotein lipase activator activity (GO:0060230)
Namespace: molecular_function
Definition: Binds to and increases the activity of a lipoprotein lipase, an enzyme that catalyzes of the hydrolysis of a lipid within a lipoprotein.
mesenchymal to epithelial transition (GO:0060231)
Namespace: biological_process
Definition: A transition where a mesenchymal cell establishes apical/basolateral polarity, forms intercellular adhesive junctions, synthesizes basement membrane components and becomes an epithelial cell.
Synonyms: epithelial cell differentiation from mesenchymal cell; mesenchymal-epithelial transition
delamination (GO:0060232)
Namespace: biological_process
Definition: The process of negative regulation of cell adhesion that results in a cell or sheet of cells splitting off from an existing epithelial sheet.
oenocyte delamination (GO:0060233)
Namespace: biological_process
Definition: The negative regulation of cell adhesion process in which an oenocyte splits off of an existing epithelial sheet.
neuroblast delamination (GO:0060234)
Namespace: biological_process
Definition: The negative regulation of cell adhesion process in which a neuroblast splits off of a neurectodermal sheet.
lens induction in camera-type eye (GO:0060235)
Namespace: biological_process
Definition: Signaling at short range between the head ectoderm and the optic vesicle that results in the head ectoderm forming a lens.
regulation of mitotic spindle organization (GO:0060236)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency or extent of the assembly, arrangement of constituent parts, or disassembly of the microtubule spindle during a mitotic cell cycle.
Synonyms: regulation of mitotic spindle organisation; regulation of mitotic spindle organization and biogenesis
regulation of fungal-type cell wall organization (GO:0060237)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency or extent of the formation, arrangement of constituent parts, or disassembly of the fungal-type cell wall.
Synonyms: regulation of fungal-type cell wall organisation; regulation of fungal-type cell wall organization and biogenesis
obsolete positive regulation of signal transduction involved in conjugation with cellular fusion (GO:0060239)
Namespace: biological_process
Definition: OBSOLETE. Any process that increases the rate, frequency or extent of signal transduction involved in conjugation with cellular fusion.
Comment: This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.
obsolete negative regulation of signal transduction involved in conjugation with cellular fusion (GO:0060240)
Namespace: biological_process
Definition: OBSOLETE. Any process that decreases the rate, frequency or extent of the series signal transduction involved in conjugation with cellular fusion.
Comment: This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.
lysozyme inhibitor activity (GO:0060241)
Namespace: molecular_function
Definition: Binds to and stops, prevents or reduces the activity of lysozyme.
negative regulation of cell growth involved in contact inhibition (GO:0060243)
Namespace: biological_process
Definition: The negative regulation of cell growth in response to increased cell density.
detection of cell density (GO:0060245)
Namespace: biological_process
Definition: The series of events in which information about the density of cells in a population is received and converted into a molecular signal.
anatomical structure homeostasis (GO:0060249)
Namespace: biological_process
Definition: A homeostatic process involved in the maintenance of an internal steady state within a defined anatomical structure of an organism, including control of cellular proliferation and death and control of metabolic function. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome.
Synonyms: anatomical structure maintenance
germ-line stem-cell niche homeostasis (GO:0060250)
Namespace: biological_process
Definition: A homeostatic process involved in the maintenance of an internal steady state within the germ-line stem-cell niche. This includes control of cellular proliferation and death and control of metabolic function that allows the niche to continue to function. A gem-line stem-cell niche is an anatomical structure that regulates how germ-line stem-cells are used and saves them from depletion.
Synonyms: germ-line stem-cell niche maintenance; maintenance of germ line stem cell niche; maintenance of germ line stem-cell niche; maintenance of germ-line stem cell niche; maintenance of germ-line stem-cell niche
regulation of glial cell proliferation (GO:0060251)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of glial cell proliferation.
positive regulation of glial cell proliferation (GO:0060252)
Namespace: biological_process
Definition: Any process that activates or increases the rate or extent of glial cell proliferation.
negative regulation of glial cell proliferation (GO:0060253)
Namespace: biological_process
Definition: Any process that stops or decreases the rate or extent of glial cell proliferation.
regulation of N-terminal protein palmitoylation (GO:0060254)
Namespace: biological_process
Definition: Any process that modulates the rate frequency or extent of the covalent attachment of a palmitoyl group to the N-terminal amino acid residue of a protein.
regulation of flocculation (GO:0060256)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency or extent of the non-sexual aggregation of single-celled organisms.
Synonyms: regulation of flocculation via cell wall protein-carbohydrate interaction
negative regulation of flocculation (GO:0060257)
Namespace: biological_process
Definition: Any process that decreases the rate, frequency or extent of the non-sexual aggregation of single-celled organisms.
Synonyms: negative regulation of coflocculation
negative regulation of filamentous growth (GO:0060258)
Namespace: biological_process
Definition: Any process that decreases the frequency, rate or extent of the process in which a multicellular organism or a group of unicellular organisms grow in a threadlike, filamentous shape.
regulation of feeding behavior (GO:0060259)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency or extent of the behavior associated with the intake of food.
Synonyms: regulation of feeding behaviour
regulation of transcription initiation by RNA polymerase II (GO:0060260)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency or extent of a process involved in starting transcription from an RNA polymerase II promoter.
Synonyms: regulation of transcription initiation from RNA polymerase II promoter
positive regulation of transcription initiation by RNA polymerase II (GO:0060261)
Namespace: biological_process
Definition: Any process that increases the rate, frequency or extent of a process involved in starting transcription from an RNA polymerase II promoter.
Synonyms: positive regulation of transcription initiation from RNA polymerase II promoter
negative regulation of N-terminal protein palmitoylation (GO:0060262)
Namespace: biological_process
Definition: Any process that decreases the rate frequency or extent of the covalent attachment of a palmitoyl group to the N-terminal amino acid residue of a protein.
regulation of respiratory burst (GO:0060263)
Namespace: biological_process
Definition: Any process that modulates the rate frequency or extent of a phase of elevated metabolic activity, during which oxygen consumption increases; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals.
regulation of respiratory burst involved in inflammatory response (GO:0060264)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency or extent of a phase of elevated metabolic activity, during which oxygen consumption increases made as a defense response ; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals.
Synonyms: regulation of respiratory burst involved in acute inflammatory response
positive regulation of respiratory burst involved in inflammatory response (GO:0060265)
Namespace: biological_process
Definition: Any process that increases the rate, frequency or extent of a phase of elevated metabolic activity, during which oxygen consumption increases made as a defense response ; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals.
Synonyms: positive regulation of respiratory burst involved in acute inflammatory response
negative regulation of respiratory burst involved in inflammatory response (GO:0060266)
Namespace: biological_process
Definition: Any process that decreases the rate, frequency or extent of a phase of elevated metabolic activity, during which oxygen consumption increases made as a defense response ; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals.
Synonyms: negative regulation of respiratory burst involved in acute inflammatory response
positive regulation of respiratory burst (GO:0060267)
Namespace: biological_process
Definition: Any process that increases the rate frequency or extent of a phase of elevated metabolic activity, during which oxygen consumption increases; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals.
negative regulation of respiratory burst (GO:0060268)
Namespace: biological_process
Definition: Any process that decreases the rate frequency or extent of a phase of elevated metabolic activity, during which oxygen consumption increases; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals.
centripetally migrating follicle cell migration (GO:0060269)
Namespace: biological_process
Definition: The cell migration process in which a follicle cell migrates as part of an epithelial sheet between the nurse cells and the oocyte. At the end of migration, they cover the anterior of the oocyte.
main body follicle cell migration (GO:0060270)
Namespace: biological_process
Definition: The ovarian follicle cell migration process in which follicle cells migrate posteriorly to form a columnar epithelium over the oocyte.
embryonic skeletal joint morphogenesis (GO:0060272)
Namespace: biological_process
Definition: The process in which the anatomical structures of skeletal joints are generated and organized during the embryonic phase. A skeletal joint is the connecting structure between the bones of the skeleton.
crying behavior (GO:0060273)
Namespace: biological_process
Definition: The behavior in which an organism sheds tears, often accompanied by non-verbal vocalizations and in response to external or internal stimuli.
obsolete maintenance of stationary phase (GO:0060274)
Namespace: biological_process
Definition: OBSOLETE. The homeostatic process in which a population of cells changes its metabolic activity resulting in the rate of death in the population equaling the rate of reproduction. Stationary phase can be in response to limited nutrients or a build-up of toxic substances in the environment.
Comment: Out of scope
obsolete maintenance of stationary phase in response to starvation (GO:0060275)
Namespace: biological_process
Definition: OBSOLETE. The homeostatic process in which a population of cells changes its metabolic activity resulting in the rate of death in the population equaling the rate of reproduction in response to limited nutrients in the environment.
Comment: Out of scope
obsolete maintenance of stationary phase in response to toxin (GO:0060276)
Namespace: biological_process
Definition: OBSOLETE. The homeostatic process in which a population of cells changes its metabolic activity resulting in the rate of death in the population equaling the rate of reproduction in response to a build-up of toxins in the environment.
Comment: Out of scope
obsolete negative regulation of transcription involved in G1 phase of mitotic cell cycle (GO:0060277)
Namespace: biological_process
Definition: OBSOLETE. Any process that stop, prevents or decreases transcription as part of the G1 phase of the mitotic cell cycle.
Synonyms: negative regulation of transcription from RNA polymerase II promoter during G1 phase of mitotic cell cycle; negative regulation of transcription involved in G1 phase of mitotic cell cycle
Comment: This term was made obsolete because it is unclear exactly what it means. It could mean either 'regulation of transcription during phase X' or 'regulation of transition between phase X and phase Y'.
regulation of ovulation (GO:0060278)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of ovulation, the release of a mature ovum/oocyte from an ovary.
positive regulation of ovulation (GO:0060279)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of ovulation, the release of a mature ovum/oocyte from an ovary.
negative regulation of ovulation (GO:0060280)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of ovulation, the release of a mature ovum/oocyte from an ovary.
regulation of oocyte development (GO:0060281)
Namespace: biological_process
Definition: Any process that modulates the rate or extent of the process whose specific outcome is the progression of an oocyte over time, from initial commitment of the cell to its specific fate, to the fully functional differentiated cell.
positive regulation of oocyte development (GO:0060282)
Namespace: biological_process
Definition: Any process that increases the rate or extent of the process whose specific outcome is the progression of an oocyte over time, from initial commitment of the cell to its specific fate, to the fully functional differentiated cell.
negative regulation of oocyte development (GO:0060283)
Namespace: biological_process
Definition: Any process that decreases the rate or extent of the process whose specific outcome is the progression of an oocyte over time, from initial commitment of the cell to its specific fate, to the fully functional differentiated cell.
regulation of cell development (GO:0060284)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency or extent of the progression of the cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a specific fate.
cilium-dependent cell motility (GO:0060285)
Namespace: biological_process
Definition: Cell motility due to the motion of one or more eukaryotic cilia. A eukaryotic cilium is a specialized organelle that consists of a filiform extrusion of the cell surface. Each cilium is bounded by an extrusion of the cytoplasmic (plasma) membrane, and contains a regular longitudinal array of microtubules, anchored basally in a centriole.
Synonyms: ciliary cell motility; cilium cell motility; microtubule-based flagellar cell motility
Comment: Note that we deem eukaryotic cilia and microtubule-based flagella to be equivalent.