LiteFold/GO huggingface dataset:
purine deoxyribonucleoside diphosphate biosynthetic process (GO:0009183)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of purine deoxyribonucleoside diphosphate, a compound consisting of a purine base linked to a deoxyribose sugar esterified with diphosphate on the sugar.
Synonyms: purine deoxyribonucleoside diphosphate anabolism; purine deoxyribonucleoside diphosphate biosynthesis; purine deoxyribonucleoside diphosphate formation; purine deoxyribonucleoside diphosphate synthesis
purine deoxyribonucleoside diphosphate catabolic process (GO:0009184)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of purine deoxyribonucleoside diphosphate, a compound consisting of a purine base linked to a deoxyribose sugar esterified with diphosphate on the sugar.
Synonyms: purine deoxyribonucleoside diphosphate breakdown; purine deoxyribonucleoside diphosphate catabolism; purine deoxyribonucleoside diphosphate degradation
ribonucleoside diphosphate metabolic process (GO:0009185)
Namespace: biological_process
Definition: The chemical reactions and pathways involving a ribonucleoside diphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with diphosphate on the sugar.
Synonyms: ribonucleoside diphosphate metabolism
obsolete deoxyribonucleoside diphosphate metabolic process (GO:0009186)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving a deoxyribonucleoside diphosphate, a compound consisting of a nucleobase linked to a deoxyribose sugar esterified with diphosphate on the sugar.
Synonyms: deoxyribonucleoside diphosphate metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
cyclic nucleotide metabolic process (GO:0009187)
Namespace: biological_process
Definition: The chemical reactions and pathways involving a cyclic nucleotide, a nucleotide in which the phosphate group is in diester linkage to two positions on the sugar residue.
Synonyms: cyclic nucleotide metabolism
ribonucleoside diphosphate biosynthetic process (GO:0009188)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of a ribonucleoside diphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with diphosphate on the sugar.
Synonyms: ribonucleoside diphosphate anabolism; ribonucleoside diphosphate biosynthesis; ribonucleoside diphosphate formation; ribonucleoside diphosphate synthesis
deoxyribonucleoside diphosphate biosynthetic process (GO:0009189)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of a deoxyribonucleoside diphosphate, a compound consisting of a nucleobase linked to a deoxyribose sugar esterified with diphosphate on the sugar.
Synonyms: deoxyribonucleoside diphosphate anabolism; deoxyribonucleoside diphosphate biosynthesis; deoxyribonucleoside diphosphate formation; deoxyribonucleoside diphosphate synthesis
cyclic nucleotide biosynthetic process (GO:0009190)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of a cyclic nucleotide, a nucleotide in which the phosphate group is in diester linkage to two positions on the sugar residue.
Synonyms: cyclic nucleotide anabolism; cyclic nucleotide biosynthesis; cyclic nucleotide formation; cyclic nucleotide synthesis
ribonucleoside diphosphate catabolic process (GO:0009191)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of a ribonucleoside diphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with diphosphate on the sugar.
Synonyms: ribonucleoside diphosphate breakdown; ribonucleoside diphosphate catabolism; ribonucleoside diphosphate degradation
deoxyribonucleoside diphosphate catabolic process (GO:0009192)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of a deoxyribonucleoside diphosphate, a compound consisting of a nucleobase linked to a deoxyribose sugar esterified with diphosphate on the sugar.
Synonyms: deoxyribonucleoside diphosphate breakdown; deoxyribonucleoside diphosphate catabolism; deoxyribonucleoside diphosphate degradation
pyrimidine ribonucleoside diphosphate metabolic process (GO:0009193)
Namespace: biological_process
Definition: The chemical reactions and pathways involving pyrimidine ribonucleoside diphosphate, a compound consisting of a pyrimidine base linked to a ribose sugar esterified with diphosphate on the sugar.
Synonyms: pyrimidine ribonucleoside diphosphate metabolism
pyrimidine ribonucleoside diphosphate biosynthetic process (GO:0009194)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of pyrimidine ribonucleoside diphosphate, a compound consisting of a pyrimidine base linked to a ribose sugar esterified with diphosphate on the sugar.
Synonyms: pyrimidine ribonucleoside diphosphate anabolism; pyrimidine ribonucleoside diphosphate biosynthesis; pyrimidine ribonucleoside diphosphate formation; pyrimidine ribonucleoside diphosphate synthesis
pyrimidine ribonucleoside diphosphate catabolic process (GO:0009195)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of pyrimidine ribonucleoside diphosphate, a compound consisting of a pyrimidine base linked to a ribose sugar esterified with diphosphate on the sugar.
Synonyms: pyrimidine ribonucleoside diphosphate breakdown; pyrimidine ribonucleoside diphosphate catabolism; pyrimidine ribonucleoside diphosphate degradation
pyrimidine deoxyribonucleoside diphosphate metabolic process (GO:0009196)
Namespace: biological_process
Definition: The chemical reactions and pathways involving pyrimidine deoxynucleoside diphosphate, a compound consisting of a pyrimidine base linked to a deoxyribose sugar esterified with diphosphate on the sugar.
Synonyms: pyrimidine deoxyribonucleoside diphosphate metabolism
pyrimidine deoxyribonucleoside diphosphate catabolic process (GO:0009198)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of pyrimidine deoxynucleoside diphosphate, a compound consisting of a pyrimidine base linked to a deoxyribose sugar esterified with diphosphate on the sugar.
Synonyms: pyrimidine deoxyribonucleoside diphosphate breakdown; pyrimidine deoxyribonucleoside diphosphate catabolism; pyrimidine deoxyribonucleoside diphosphate degradation
obsolete ribonucleoside triphosphate metabolic process (GO:0009199)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving a ribonucleoside triphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with triphosphate on the sugar.
Synonyms: ribonucleoside triphosphate metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
deoxyribonucleoside triphosphate metabolic process (GO:0009200)
Namespace: biological_process
Definition: The chemical reactions and pathways involving a deoxyribonucleoside triphosphate, a compound consisting of a nucleobase linked to a deoxyribose sugar esterified with triphosphate on the sugar.
Synonyms: deoxyribonucleoside triphosphate metabolism
ribonucleoside triphosphate biosynthetic process (GO:0009201)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of a ribonucleoside triphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with triphosphate on the sugar.
Synonyms: ribonucleoside triphosphate anabolism; ribonucleoside triphosphate biosynthesis; ribonucleoside triphosphate formation; ribonucleoside triphosphate synthesis
deoxyribonucleoside triphosphate biosynthetic process (GO:0009202)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of a deoxyribonucleoside triphosphate, a compound consisting of a nucleobase linked to a deoxyribose sugar esterified with triphosphate on the sugar.
Synonyms: deoxyribonucleoside triphosphate anabolism; deoxyribonucleoside triphosphate biosynthesis; deoxyribonucleoside triphosphate formation; deoxyribonucleoside triphosphate synthesis
ribonucleoside triphosphate catabolic process (GO:0009203)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of a ribonucleoside triphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with triphosphate on the sugar.
Synonyms: ribonucleoside triphosphate breakdown; ribonucleoside triphosphate catabolism; ribonucleoside triphosphate degradation
deoxyribonucleoside triphosphate catabolic process (GO:0009204)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of a deoxyribonucleoside triphosphate, a compound consisting of a nucleobase linked to a deoxyribose sugar esterified with triphosphate on the sugar.
Synonyms: deoxyribonucleoside triphosphate breakdown; deoxyribonucleoside triphosphate catabolism; deoxyribonucleoside triphosphate degradation
purine ribonucleoside triphosphate metabolic process (GO:0009205)
Namespace: biological_process
Definition: The chemical reactions and pathways involving purine ribonucleoside triphosphate, a compound consisting of a purine base linked to a ribose sugar esterified with triphosphate on the sugar.
Synonyms: purine ribonucleoside triphosphate metabolism
purine ribonucleoside triphosphate biosynthetic process (GO:0009206)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of purine ribonucleoside triphosphate, a compound consisting of a purine base linked to a ribose sugar esterified with triphosphate on the sugar.
Synonyms: purine ribonucleoside triphosphate anabolism; purine ribonucleoside triphosphate biosynthesis; purine ribonucleoside triphosphate formation; purine ribonucleoside triphosphate synthesis
pyrimidine ribonucleoside triphosphate metabolic process (GO:0009208)
Namespace: biological_process
Definition: The chemical reactions and pathways involving pyrimidine ribonucleoside triphosphate, a compound consisting of a pyrimidine base linked to a ribose sugar esterified with triphosphate on the sugar.
Synonyms: pyrimidine ribonucleoside triphosphate metabolism
pyrimidine ribonucleoside triphosphate biosynthetic process (GO:0009209)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of pyrimidine ribonucleoside triphosphate, a compound consisting of a pyrimidine base linked to a ribose sugar esterified with triphosphate on the sugar.
Synonyms: pyrimidine ribonucleoside triphosphate anabolism; pyrimidine ribonucleoside triphosphate biosynthesis; pyrimidine ribonucleoside triphosphate formation; pyrimidine ribonucleoside triphosphate synthesis
pyrimidine ribonucleoside triphosphate catabolic process (GO:0009210)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of pyrimidine ribonucleoside triphosphate, a compound consisting of a pyrimidine base linked to a ribose sugar esterified with triphosphate on the sugar.
Synonyms: pyrimidine ribonucleoside triphosphate breakdown; pyrimidine ribonucleoside triphosphate catabolism; pyrimidine ribonucleoside triphosphate degradation
pyrimidine deoxyribonucleoside triphosphate metabolic process (GO:0009211)
Namespace: biological_process
Definition: The chemical reactions and pathways involving pyrimidine deoxyribonucleoside triphosphate, a compound consisting of a pyrimidine base linked to a deoxyribose sugar esterified with triphosphate on the sugar.
Synonyms: pyrimidine deoxyribonucleoside triphosphate metabolism
pyrimidine deoxyribonucleoside triphosphate biosynthetic process (GO:0009212)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of pyrimidine deoxyribonucleoside triphosphate, a compound consisting of a pyrimidine base linked to a deoxyribose sugar esterified with triphosphate on the sugar.
Synonyms: pyrimidine deoxyribonucleoside triphosphate anabolism; pyrimidine deoxyribonucleoside triphosphate biosynthesis; pyrimidine deoxyribonucleoside triphosphate formation; pyrimidine deoxyribonucleoside triphosphate synthesis
pyrimidine deoxyribonucleoside triphosphate catabolic process (GO:0009213)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of pyrimidine deoxyribonucleoside triphosphate, a compound consisting of a pyrimidine base linked to a deoxyribose sugar esterified with triphosphate on the sugar.
Synonyms: pyrimidine deoxyribonucleoside triphosphate breakdown; pyrimidine deoxyribonucleoside triphosphate catabolism; pyrimidine deoxyribonucleoside triphosphate degradation
cyclic nucleotide catabolic process (GO:0009214)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of a cyclic nucleotide, a nucleotide in which the phosphate group is in diester linkage to two positions on the sugar residue.
Synonyms: cyclic nucleotide breakdown; cyclic nucleotide catabolism; cyclic nucleotide degradation
purine deoxyribonucleoside triphosphate biosynthetic process (GO:0009216)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of purine deoxyribonucleoside triphosphate, a compound consisting of a purine base linked to a deoxyribose sugar esterified with triphosphate on the sugar.
Synonyms: purine deoxyribonucleoside triphosphate anabolism; purine deoxyribonucleoside triphosphate biosynthesis; purine deoxyribonucleoside triphosphate formation; purine deoxyribonucleoside triphosphate synthesis
purine deoxyribonucleoside triphosphate catabolic process (GO:0009217)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of purine deoxyribonucleoside triphosphate, a compound consisting of a purine base linked to a deoxyribose sugar esterified with triphosphate on the sugar.
Synonyms: purine deoxyribonucleoside triphosphate breakdown; purine deoxyribonucleoside triphosphate catabolism; purine deoxyribonucleoside triphosphate degradation
pyrimidine deoxyribonucleotide metabolic process (GO:0009219)
Namespace: biological_process
Definition: The chemical reactions and pathways involving a pyrimidine deoxynucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Synonyms: pyrimidine deoxyribonucleotide metabolism
pyrimidine ribonucleotide biosynthetic process (GO:0009220)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of a pyrimidine ribonucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Synonyms: pyrimidine ribonucleotide anabolism; pyrimidine ribonucleotide biosynthesis; pyrimidine ribonucleotide formation; pyrimidine ribonucleotide synthesis
pyrimidine deoxyribonucleotide biosynthetic process (GO:0009221)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of a pyrimidine deoxyribonucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Synonyms: pyrimidine deoxyribonucleotide anabolism; pyrimidine deoxyribonucleotide biosynthesis; pyrimidine deoxyribonucleotide formation; pyrimidine deoxyribonucleotide synthesis
pyrimidine ribonucleotide catabolic process (GO:0009222)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of a pyrimidine ribonucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Synonyms: pyrimidine ribonucleotide breakdown; pyrimidine ribonucleotide catabolism; pyrimidine ribonucleotide degradation
pyrimidine deoxyribonucleotide catabolic process (GO:0009223)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of a pyrimidine deoxyribonucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Synonyms: pyrimidine deoxyribonucleotide breakdown; pyrimidine deoxyribonucleotide catabolism; pyrimidine deoxyribonucleotide degradation
CMP biosynthetic process (GO:0009224)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of CMP, cytidine monophosphate.
Synonyms: CMP anabolism; CMP biosynthesis; CMP formation; CMP synthesis
nucleotide-sugar metabolic process (GO:0009225)
Namespace: biological_process
Definition: The cellular chemical reactions and pathways involving nucleotide-sugars, any nucleotide-carbohydrate in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative.
Synonyms: nucleotide-sugar metabolism
nucleotide-sugar biosynthetic process (GO:0009226)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of nucleotide-sugars, any nucleotide-carbohydrate in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative.
Synonyms: nucleotide-sugar anabolism; nucleotide-sugar biosynthesis; nucleotide-sugar formation; nucleotide-sugar synthesis
obsolete nucleotide-sugar catabolic process (GO:0009227)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the breakdown of nucleotide-sugars, any nucleotide-carbohydrate in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative.
Synonyms: nucleotide-sugar breakdown; nucleotide-sugar catabolism; nucleotide-sugar degradation
Comment: The reason for obsoletion is that this term is not clearly defined.
thiamine biosynthetic process (GO:0009228)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of thiamine (vitamin B1), a water soluble vitamin present in fresh vegetables and meats, especially liver.
Synonyms: thiamin anabolism; thiamin biosynthetic process; thiamine biosynthesis; thiamine formation; thiamine synthesis; vitamin B1 biosynthesis; vitamin B1 biosynthetic process
thiamine diphosphate biosynthetic process (GO:0009229)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of thiamine diphosphate, a derivative of thiamine (vitamin B1) which acts as a coenzyme in a range of processes including the Krebs cycle.
Synonyms: thiamin diphosphate biosynthetic process; thiamin pyrophosphate biosynthesis; thiamin pyrophosphate biosynthetic process; thiamine diphosphate anabolism; thiamine diphosphate biosynthesis; thiamine diphosphate formation; thiamine diphosphate synthesis; thiamine pyrophosphate biosynthesis; thiamine pyrophosphate biosynthetic process; TPP biosynthesis; TPP biosynthetic process
thiamine catabolic process (GO:0009230)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of thiamine (vitamin B1), a water soluble vitamin present in fresh vegetables and meats, especially liver.
Synonyms: thiamin catabolic process; thiamine breakdown; thiamine catabolism; thiamine degradation; vitamin B1 catabolic process; vitamin B1 catabolism
riboflavin biosynthetic process (GO:0009231)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of riboflavin (vitamin B2), the precursor for the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD).
Synonyms: riboflavin anabolism; riboflavin biosynthesis; riboflavin formation; riboflavin synthesis; vitamin B2 biosynthesis; vitamin B2 biosynthetic process; vitamin G biosynthesis; vitamin G biosynthetic process
riboflavin catabolic process (GO:0009232)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of riboflavin (vitamin B2), the precursor for the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD).
Synonyms: riboflavin breakdown; riboflavin catabolism; riboflavin degradation; vitamin B2 catabolic process; vitamin B2 catabolism; vitamin G catabolic process; vitamin G catabolism
menaquinone metabolic process (GO:0009233)
Namespace: biological_process
Definition: The chemical reactions and pathways involving any of the menaquinones, quinone-derived compounds synthesized by intestinal bacteria. Structurally, menaquinones consist of a methylated naphthoquinone ring structure and side chains composed of a variable number of unsaturated isoprenoid residues. Menaquinones have vitamin K activity and are known as vitamin K2.
Synonyms: menaquinone metabolism; menatetrenone metabolic process; menatetrenone metabolism; multiprenylmenaquinone metabolic process; multiprenylmenaquinone metabolism; vitamin K2 metabolic process; vitamin K2 metabolism
menaquinone biosynthetic process (GO:0009234)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of any of the menaquinones. Structurally, menaquinones consist of a methylated naphthoquinone ring structure and side chains composed of a variable number of unsaturated isoprenoid residues. Menaquinones that have vitamin K activity and are known as vitamin K2.
Synonyms: menaquinone anabolism; menaquinone biosynthesis; menaquinone formation; menaquinone synthesis; menatetrenone biosynthesis; menatetrenone biosynthetic process; multiprenylmenaquinone biosynthesis; multiprenylmenaquinone biosynthetic process; vitamin K2 biosynthesis; vitamin K2 biosynthetic process
cobalamin metabolic process (GO:0009235)
Namespace: biological_process
Definition: The chemical reactions and pathways involving cobalamin (vitamin B12), a water-soluble vitamin characterized by possession of a corrin nucleus containing a cobalt atom.
Synonyms: cobalamin metabolism; vitamin B12 metabolic process; vitamin B12 metabolism; vitamin B12 reduction
cobalamin biosynthetic process (GO:0009236)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of cobalamin (vitamin B12), a water-soluble vitamin characterized by possession of a corrin nucleus containing a cobalt atom.
Synonyms: cobalamin anabolism; cobalamin biosynthesis; cobalamin formation; cobalamin synthesis; vitamin B12 biosynthesis; vitamin B12 biosynthetic process
obsolete enterobactin metabolic process (GO:0009238)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving enterobactin, a catechol-derived siderochrome of Enterobacteria; enterobactin (N',N',N''-(2,6,10-trioxo-1,5,9-triacyclodecane-3,7,11-triyl)tris(2,3-dihydroxy)benzamide) is a self-triester of 2,3-dihydroxy-N-benzoyl-L-serine and a product of the shikimate pathway.
Synonyms: enterobactin metabolism; enterochelin metabolic process; enterochelin metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.