LiteFold/GO huggingface dataset:
obsolete microRNA metabolic process (GO:0010194)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving microRNA, a large family of 21-22 nucleotide non-coding RNAs with presumed post-transcriptional regulatory activity.
Synonyms: microRNA metabolic process
Comment: This term was made obsolete because it implies further processing of an end product rather than its production.
obsolete microRNA biosynthetic process (GO:0010195)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of microRNA, a large family of 21-22 nucleotide non-coding RNAs with presumed post-transcriptional regulatory activity.
Synonyms: microRNA anabolism; microRNA biosynthesis; microRNA biosynthetic process; microRNA formation; microRNA synthesis; miRNA biosynthesis; miRNA biosynthetic process
Comment: This term was made obsolete because it represents a process that is not known to occur.
nonphotochemical quenching (GO:0010196)
Namespace: biological_process
Definition: The process by which excess light energy absorbed by chlorophyll and not used to drive photosynthesis is emitted as heat. This process helps maintain the balance between dissipation and utilization of light energy to minimize generation of oxidizing molecules, thereby protecting the plant against photo-oxidative damage.
polar nucleus fusion (GO:0010197)
Namespace: biological_process
Definition: The merging of the polar nuclei, the two nuclei contained within the same cell that are created from the mitotic division of the megaspore during angiosperm reproduction. Polar nuclear fusion takes place in the ovule, forming in the fusion nucleus and giving rise to the endosperm when fertilized.
synergid death (GO:0010198)
Namespace: biological_process
Definition: Synergid cells undergo degeneration and death in response to penetration by the pollen tube. It is an active process that involves a dramatic decrease in cell volume, collapse of the vacuoles, and complete disintegration of the plasma membrane and most organelles.
Synonyms: synergid cell death; synergid degeneration
response to chitin (GO:0010200)
Namespace: biological_process
Definition: A process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus.
response to continuous far red light stimulus by the high-irradiance response system (GO:0010201)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of the detection of a continuous far red light stimulus by the high-irradiance response system. Far red light is electromagnetic radiation of wavelength 700-800nm. The activity of the high-irradiance response system is characterized by stronger effects of continuous than pulsed light at equal total fluence.
response to low fluence red light stimulus (GO:0010202)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a low fluence red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. Low fluence red light is defined in this case as short pulses of red light followed by darkness, providing a light level of 0.001-0.1 mmol/m2/sec.
response to very low fluence red light stimulus (GO:0010203)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a very low fluence red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. Very low fluence red light is defined in this case as short pulses of red light followed by darkness, providing light levels of less than 0.001 mmol/m2/sec.
photoinhibition (GO:0010205)
Namespace: biological_process
Definition: The mechanism by which high light intensity inhibits photosynthesis through inactivation of the D1 protein of photosystem II.
Synonyms: photosystem II inhibition
photosystem II repair (GO:0010206)
Namespace: biological_process
Definition: Proteolysis of the damaged D1 protein and re-assembly of a new D1 subunit in the photosystem II following photoinhibition.
photosystem II assembly (GO:0010207)
Namespace: biological_process
Definition: The aggregation, arrangement and bonding together of a set of components to form a photosystem II complex on the thylakoid membrane. The photosystem II complex consists of at least 20 polypeptides and around 80 cofactors in most organisms.
vacuolar sorting signal receptor activity (GO:0010209)
Namespace: molecular_function
Definition: Binding to a vacuolar sorting signal, a specific peptide sequence that acts as a signal to localize the protein within the vacuole.
Synonyms: vacuolar sorting signal binding
IAA-Phe conjugate hydrolase activity (GO:0010210)
Namespace: molecular_function
Definition: Catalysis of the reaction: indole-3-acetyl-phenylalanine + H2O = indole-3-acetate + phenylalanine.
non-photoreactive DNA repair (GO:0010213)
Namespace: biological_process
Definition: A DNA repair process that is involved in repairing UV-induced DNA damage under non-photoreactivating conditions. The mechanism by which this repair process operates has not yet been completely elucidated.
Synonyms: light-independent DNA repair
cellulose microfibril organization (GO:0010215)
Namespace: biological_process
Definition: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a cellulose microfibril, any of the cellulose structures laid down in orthogonal layers in a plant cell wall.
Synonyms: cellulose microfibril organisation
obsolete negative regulation of gene expression via chromosomal DNA cytosine methylation (GO:0010216)
Namespace: biological_process
Definition: OBSOLETE. An epigenetic gene regulation mechanism that negatively regulates gene expression by methylation of cytosine residues in chromosomal DNA.
Synonyms: maintenance of DNA methylation
Comment: This term was obsoleted because it represents the same process as negative regulation of gene expression via CpG island methylation ; GO:0044027.
obsolete intracellular aluminum ion homeostasis (GO:0010217)
Namespace: biological_process
Definition: OBSOLETE. A homeostatic process involved in the maintenance of a steady state level of aluminium ions within a cell.
Synonyms: cellular aluminium ion homeostasis; cellular aluminum ion homeostasis
Comment: This term was obsoleted because this process is not believed to exist.
response to far red light (GO:0010218)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of far red light stimulus. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs.
Synonyms: response to far red light stimulus
regulation of vernalization response (GO:0010219)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the vernalization response, by which induction of flowering is normally caused by extended exposure to cold temperatures.
positive regulation of vernalization response (GO:0010220)
Namespace: biological_process
Definition: Any process that activates or induces the rate of the vernalization response, by which induction of flowering is normally caused by extended exposure to cold temperatures.
Synonyms: activation of vernalization response; stimulation of vernalization response; up regulation of vernalization response; up-regulation of vernalization response; upregulation of vernalization response
negative regulation of vernalization response (GO:0010221)
Namespace: biological_process
Definition: Any process that stops, prevents or reduces the vernalization response, by which induction of flowering is normally caused by extended exposure to cold temperatures.
Synonyms: down regulation of vernalization response; down-regulation of vernalization response; downregulation of vernalization response; inhibition of vernalization response
stem vascular tissue pattern formation (GO:0010222)
Namespace: biological_process
Definition: Vascular tissue pattern formation as it occurs in the stem of vascular plants.
secondary shoot formation (GO:0010223)
Namespace: biological_process
Definition: The process that gives rise to secondary (or auxiliary or axillary) shoots in plants. This process pertains to the initial formation of a structure from unspecified parts. These secondary shoots originate from secondary meristems initiated in the axils of leaf primordia. Axillary meristems function like the shoot apical meristem of the primary shoot initiating the development of lateral organs.
Synonyms: auxiliary shoot formation; axillary shoot formation; axillary shoot system formation; shoot branching
response to UV-B (GO:0010224)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-B radiation stimulus. UV-B radiation (UV-B light) spans the wavelengths 280 to 315 nm.
Synonyms: response to medium wave ultraviolet light stimulus; response to medium wave ultraviolet radiation stimulus; response to UV-B light stimulus; response to UV-B radiation stimulus; response to UVB light stimulus; response to UVB radiation stimulus
response to UV-C (GO:0010225)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-C radiation stimulus. UV-C radiation (UV-C light) spans the wavelengths 100 to 280 nm.
Synonyms: response to germicidal ultraviolet light stimulus; response to germicidal ultraviolet radiation stimulus; response to shortwave ultraviolet light stimulus; response to shortwave ultraviolet radiation stimulus; response to UV-C light stimulus; response to UV-C radiation stimulus; response to UVC light stimulus; response to UVC radiation stimulus
response to lithium ion (GO:0010226)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lithium (Li+) ion stimulus.
floral organ abscission (GO:0010227)
Namespace: biological_process
Definition: The controlled shedding of floral organs.
vegetative to reproductive phase transition of meristem (GO:0010228)
Namespace: biological_process
Definition: The process involved in transforming a meristem that produces vegetative structures, such as leaves, into a meristem that produces reproductive structures, such as a flower or an inflorescence.
Synonyms: floral evocation; flowering; transition from vegetative to reproductive phase
inflorescence development (GO:0010229)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of an inflorescence over time, from its formation to the mature structure.
maintenance of seed dormancy (GO:0010231)
Namespace: biological_process
Definition: Any process that maintains a seed in a dormant state.
vascular transport (GO:0010232)
Namespace: biological_process
Definition: The directed movement of substances, into, out of or within a cell, either in a vascular tissue or in the vascular membrane.
phloem transport (GO:0010233)
Namespace: biological_process
Definition: The directed movement of substances, into, out of or within the phloem during long distance transport between source and sink tissues.
plastoquinone biosynthetic process (GO:0010236)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of plastoquinone, a lipid-soluble electron-transporting coenzyme present in the chloroplast.
Synonyms: plastoquinone anabolism; plastoquinone biosynthesis; plastoquinone formation; plastoquinone synthesis
response to proline (GO:0010238)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a proline stimulus.
chloroplast mRNA processing (GO:0010239)
Namespace: biological_process
Definition: Steps involved in processing precursor RNAs arising from transcription of operons in the chloroplast genome into mature mRNAs.
obsolete plastid pyruvate dehydrogenase complex (GO:0010240)
Namespace: cellular_component
Definition: OBSOLETE. A plastid complex that carries out the oxidative decarboxylation of pyruvate to form acetyl-CoA; comprises subunits possessing three catalytic activities: pyruvate dehydrogenase (E1), dihydrolipoamide S-acetyltransferase (E2), and dihydrolipoamide dehydrogenase (E3). This complex is found in plant plastids and is distinct from the one found in mitochondria.
Synonyms: dehydrogenase complex
Comment: This term is unnecessarily taxon-specific.
ent-kaurene oxidation to kaurenoic acid (GO:0010241)
Namespace: biological_process
Definition: The three successive oxidations of the 4-methyl group of ent-kaurene to form ent-kaur-16-en-19-oate, kaurenoic acid. This process may be carried out entirely by the enzyme ent-kaurene oxidase.
Synonyms: ent-kaurene oxidation to ent-kaur-16-en-19-oate; ent-kaurene oxidation to ent-kaurenoate; ent-kaurene oxidation to kaurenoic acid by ent-kaurene oxidase
Comment: Note that this term was in molecular function but was moved to biological process as it represents three successive reactions.
oxygen evolving activity (GO:0010242)
Namespace: molecular_function
Definition: Catalysis of the reaction: 2 H2O = O2 + 4 H+ + 4 e-. The evolution of oxygen from oxidizing water is carried out by the oxygen evolving complex in photosystem II of plants. P680+, the photochemically oxidized reaction-center chlorophyll of PSII, is a strong biological oxidant. The reduction potential of P680+ is more positive than that of water, and thus it can oxidize water to give O2 and H+ ions. The oxygen escapes as a gas while the H+ ions remain in solution inside the thylakoid vesicle.
Synonyms: photosynthetic water oxidation
obsolete response to organonitrogen compound (GO:0010243)
Namespace: biological_process
Definition: OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organonitrogen stimulus. An organonitrogen compound is formally a compound containing at least one carbon-nitrogen bond.
Synonyms: response to organic nitrogen
Comment: This term was obsoleted because it represents an unnecessary grouping class.
response to low fluence blue light stimulus by blue low-fluence system (GO:0010244)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of the detection of a low fluence blue light stimulus by the blue low-fluence system. Blue light is electromagnetic radiation with a wavelength of between 440 and 500nm. The blue low-fluence system responds to blue light at or below 0.1 micromols/m2. In certain species excitation of the blue low fluence system induces the transcription of a number of nuclear and plastid coded genes.
Synonyms: response to low fluence blue light; response to low fluence blue light by blf system
radial microtubular system formation (GO:0010245)
Namespace: biological_process
Definition: Formation of radial microtubular systems during male meiotic cytokinesis in plants.
rhamnogalacturonan I biosynthetic process (GO:0010246)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of rhamnogalacturonan I component of pectin, a rhamnose-rich pectic polysaccharide.
Synonyms: rhamnogalacturonan I anabolism; rhamnogalacturonan I biosynthesis; rhamnogalacturonan I formation; rhamnogalacturonan I synthesis
detection of phosphate ion (GO:0010247)
Namespace: biological_process
Definition: The series of events in which a phosphate ion stimulus is received by a cell and converted into a molecular signal.
Synonyms: phosphate ion detection; phosphate ion perception; phosphate ion sensing
establishment or maintenance of transmembrane electrochemical gradient (GO:0010248)
Namespace: biological_process
Definition: The directed movement of ions to establish or maintain an electrochemical gradient across a membrane by means of some agent such as a transporter or pore.
auxin conjugate metabolic process (GO:0010249)
Namespace: biological_process
Definition: The chemical reactions and pathways involving auxin conjugates, a bound form of auxin.
Synonyms: auxin conjugate metabolism
S-methylmethionine biosynthetic process (GO:0010250)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of S-methyl-methionine (SMM) from methionine and S-adenosyl-methionine (Ado-Met), catalyzed by methionine S-methyltransferase (MMT). SMM can be reconverted to methionine by donating a methyl group to homocysteine, and concurrent operation of this reaction and that mediated by MMT sets up the SMM cycle.
Synonyms: S-methylmethionine anabolism; S-methylmethionine biosynthesis; S-methylmethionine formation; S-methylmethionine synthesis
obsolete auxin homeostasis (GO:0010252)
Namespace: biological_process
Definition: OBSOLETE. A homeostatic process that maintains an endogenous steady-state concentration of primary auxin, or constant level of auxin in a biological system, by a number of biochemical processes including transport, biosynthesis, catabolism and conjugation.
Comment: This term was obsoleted in favor of 'intracellular' and 'multicellular organism-level' auxin homeostasis terms.
UDP-rhamnose biosynthetic process (GO:0010253)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of UDP-L-rhamnose, a substance composed of rhamnose in glycosidic linkage with uridine diphosphate.
Synonyms: UDP-rhamnose anabolism; UDP-rhamnose biosynthesis; UDP-rhamnose formation; UDP-rhamnose synthesis
nectary development (GO:0010254)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the floral nectaries over time, from its formation to the mature structure.
glucose mediated signaling pathway (GO:0010255)
Namespace: biological_process
Definition: The process in which a change in the level of mono- and disaccharide glucose trigger the expression of genes controlling metabolic and developmental processes.
Synonyms: glucose mediated signalling
endomembrane system organization (GO:0010256)
Namespace: biological_process
Definition: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the endomembrane system.
Synonyms: endomembrane organization; endomembrane system organisation
NADH dehydrogenase complex assembly (GO:0010257)
Namespace: biological_process
Definition: The aggregation, arrangement and bonding together of a set of components to form an NADH dehydrogenase complex.
NADH dehydrogenase complex (plastoquinone) assembly (GO:0010258)
Namespace: biological_process
Definition: The aggregation, arrangement and bonding together of a set of components to form NADH:plastoquinone dehydrogenase complex, which is involved in the non-photochemical reduction of plastoquinones, as well as the cyclic electron transport around photosystem I.
obsolete multicellular organism aging (GO:0010259)
Namespace: biological_process
Definition: OBSOLETE. An aging process that has as participant a whole multicellular organism. Multicellular organism aging includes loss of functions such as resistance to disease, homeostasis, and fertility, as well as wear and tear. Multicellular organisms aging includes processes like cellular senescence and organ senescence, but is more inclusive. May precede death (GO:0016265) of an organism and may succeed developmental maturation (GO:0021700).
Comment: The reason for obsoletion is that this represents a phenotype.
obsolete animal organ senescence (GO:0010260)
Namespace: biological_process
Definition: OBSOLETE. The process that occurs in an animal organ near the end of its active life that is associated with the dismantling of cell components and membranes, and an overall decline in metabolism.
Comment: This term was obsoleted because there is no evidence that this process exists.
somatic embryogenesis (GO:0010262)
Namespace: biological_process
Definition: Initiation of a somatic embryo-an embryo arising from previously differentiated somatic cells, rather than from fused haploid gametes.
myo-inositol hexakisphosphate biosynthetic process (GO:0010264)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of phytic acid, myo-inositol hexakisphosphate, a regulator of intracellular signaling, a highly abundant animal anti-nutrient and a phosphate and mineral storage compound in plant seeds.
Synonyms: myo-inositol hexakisphosphate anabolism; myo-inositol hexakisphosphate biosynthesis; myo-inositol hexakisphosphate formation; myo-inositol hexakisphosphate synthesis; phytate biosynthesis; phytate biosynthetic process
SCF complex assembly (GO:0010265)
Namespace: biological_process
Definition: The aggregation, arrangement and bonding together of a set of components to form the SKP1-Cullin/Cdc53-F-box protein ubiquitin ligase (SCF) complex.
response to vitamin B1 (GO:0010266)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin B1 stimulus.
Synonyms: response to thiamin; response to thiamine
ta-siRNA processing (GO:0010267)
Namespace: biological_process
Definition: A process leading to the generation of a functional trans-acting small interfering RNA (ta-siRNA). ta-siRNAs function like miRNAs to guide cleavage of target mRNAs.
Synonyms: primary ta-siRNA processing; production of small RNA involved in gene silencing by RNA; production of ta-siRNAs involved in RNA interference; RNA interference, production of ta-siRNAs
brassinosteroid homeostasis (GO:0010268)
Namespace: biological_process
Definition: Any process involved in the maintenance of an internal steady state of brassinosteroids within an organism or cell.