LiteFold/GO huggingface dataset:
obsolete positive regulation of transcription from RNA polymerase II promoter in response to a hypotonic environment (GO:0061401)
Namespace: biological_process
Definition: OBSOLETE. Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of detection of, or exposure to, a decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete positive regulation of transcription from RNA polymerase II promoter in response to acidic pH (GO:0061402)
Namespace: biological_process
Definition: OBSOLETE. Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a pH stimulus with pH < 7.
Synonyms: positive regulation of transcription from RNA polymerase II promoter in response to acidity
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete positive regulation of transcription from RNA polymerase II promoter in response to nitrosative stress (GO:0061403)
Namespace: biological_process
Definition: OBSOLETE. Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a nitrosative stress stimulus. Nitrosative stress is a state often resulting from exposure to high levels of nitric oxide (NO) or the highly reactive oxidant peroxynitrite, which is produced following interaction of NO with superoxide anions.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete positive regulation of transcription from RNA polymerase II promoter in response to increased salt (GO:0061404)
Namespace: biological_process
Definition: OBSOLETE. Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of detection of, or exposure to, an increase in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete positive regulation of transcription from RNA polymerase II promoter in response to hydrostatic pressure (GO:0061405)
Namespace: biological_process
Definition: OBSOLETE. Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a hydrostatic pressure stimulus. Hydrostatic pressure is the force acting on an object in a system where the fluid is at rest (as opposed to moving). The weight of the fluid above the object creates pressure on it.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete positive regulation of transcription from RNA polymerase II promoter in response to glucose starvation (GO:0061406)
Namespace: biological_process
Definition: OBSOLETE. Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of deprivation of glucose.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete positive regulation of transcription from RNA polymerase II promoter in response to hydrogen peroxide (GO:0061407)
Namespace: biological_process
Definition: OBSOLETE. Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a hydrogen peroxide (H2O2) stimulus.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete positive regulation of transcription from RNA polymerase II promoter in response to heat stress (GO:0061408)
Namespace: biological_process
Definition: OBSOLETE. Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete positive regulation of transcription from RNA polymerase II promoter in response to freezing (GO:0061409)
Namespace: biological_process
Definition: OBSOLETE. Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a freezing stimulus, temperatures below 0 degrees Celsius.
Comment: This term was obsoleted because this is not a GO process.
obsolete positive regulation of transcription from RNA polymerase II promoter in response to ethanol (GO:0061410)
Namespace: biological_process
Definition: OBSOLETE. Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of an ethanol stimulus.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete positive regulation of transcription from RNA polymerase II promoter in response to cold (GO:0061411)
Namespace: biological_process
Definition: OBSOLETE. Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete positive regulation of transcription from RNA polymerase II promoter in response to amino acid starvation (GO:0061412)
Namespace: biological_process
Definition: OBSOLETE. Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of deprivation of amino acids.
Comment: This term was obsoleted because it represents a GO-CAM model.
regulation of transcription from RNA polymerase II promoter by a nonfermentable carbon source (GO:0061413)
Namespace: biological_process
Definition: A transcription regulation process in which the presence of a nonfermentable carbon source leads to the modulation of the frequency, rate, or extent of transcription, from an RNA polymerase II promoter, of specific genes involved in the metabolism of other carbon sources.
positive regulation of transcription from RNA polymerase II promoter by a nonfermentable carbon source (GO:0061414)
Namespace: biological_process
Definition: A transcription regulation process in which the presence of a nonfermentable carbon source leads to an increase of the frequency, rate, or extent of transcription, from an RNA polymerase II promoter, of specific genes involved in the metabolism of other carbon sources.
negative regulation of transcription from RNA polymerase II promoter by a nonfermentable carbon source (GO:0061415)
Namespace: biological_process
Definition: A transcription regulation process in which the presence of a nonfermentable carbon source leads to a decrease of the frequency, rate, or extent of transcription, from an RNA polymerase II promoter, of specific genes involved in the metabolism of other carbon sources.
obsolete regulation of transcription from RNA polymerase II promoter in response to salt stress (GO:0061416)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a stimulus indicating the organism is under salt stress. The stress is usually an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete negative regulation of transcription from RNA polymerase II promoter in response to oxidative stress (GO:0061417)
Namespace: biological_process
Definition: OBSOLETE. Any process that decreases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a stimulus indicating the organism is under oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete regulation of transcription from RNA polymerase II promoter in response to hypoxia (GO:0061418)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a hypoxia stimulus.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete regulation of transcription from RNA polymerase II promoter in response to biotin starvation (GO:0061420)
Namespace: biological_process
Definition: OBSOLETE. Modulation of the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of deprivation of biotin.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete positive regulation of transcription by oleic acid (GO:0061421)
Namespace: biological_process
Definition: OBSOLETE. Any process involving oleic acid that activates or increases the rate of transcription.
Comment: This term was obsoleted because it it not different from its child positive regulation of transcription from RNA polymerase II promoter by oleic acid ; GO:0061429.
obsolete positive regulation of transcription from RNA polymerase II promoter in response to alkaline pH (GO:0061422)
Namespace: biological_process
Definition: OBSOLETE. Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a pH >7.0.
Synonyms: positive regulation of transcription from RNA polymerase II promoter in response to alkalinity
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete positive regulation of sodium ion transport by positive regulation of transcription from RNA polymerase II promoter (GO:0061423)
Namespace: biological_process
Definition: OBSOLETE. Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter resulting in the increased frequency, rate or extent of the directed movement of sodium ions (Na+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete positive regulation of peroxisome organization by positive regulation of transcription from RNA polymerase II promoter (GO:0061424)
Namespace: biological_process
Definition: OBSOLETE. Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter and activates or increases the frequency, rate or extent of peroxisome organization.
Synonyms: positive regulation of peroxisome organisation by positive regulation of transcription from RNA polymerase II promoter
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete positive regulation of ethanol catabolic process by positive regulation of transcription from RNA polymerase II promoter (GO:0061425)
Namespace: biological_process
Definition: OBSOLETE. Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter and activates or increases the frequency, rate or extent of an ethanol catabolic process.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete positive regulation of sulfite transport by positive regulation of transcription from RNA polymerase II promoter (GO:0061426)
Namespace: biological_process
Definition: OBSOLETE. Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter and activates or increases the frequency, rate or extent of sulfite transport.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete negative regulation of transcription from RNA polymerase II promoter in response to hypoxia (GO:0061428)
Namespace: biological_process
Definition: OBSOLETE. Any process that decreases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a hypoxia stimulus.
Comment: This term was obsoleted because it represents a GO-CAM model.
bone trabecula morphogenesis (GO:0061430)
Namespace: biological_process
Definition: The process of shaping a trabecula in bone. A trabecula is a tissue element in the form of a small beam, strut or rod.
cellular response to methionine (GO:0061431)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a methionine stimulus.
obsolete regulation of transcription from RNA polymerase II promoter in response to methionine (GO:0061432)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a methionine stimulus.
Comment: This term was obsoleted because it represents a GO-CAM model.
cellular response to caloric restriction (GO:0061433)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a of caloric restriction, insufficient food energy intake.
obsolete regulation of replicative cell aging by regulation of transcription from RNA polymerase II promoter in response to caloric restriction (GO:0061434)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of replicative cell aging through a mechanism that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a caloric restriction stimulus.
Comment: This term was obsoleted because it represents a GO-CAM model.
positive regulation of transcription from a mobile element promoter (GO:0061435)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of transcription from a mobile element promoter.
establishment of skin barrier (GO:0061436)
Namespace: biological_process
Definition: Establishment of the epithelial barrier, the functional barrier in the skin that limits its permeability.
Synonyms: epithelial barrier development; establishment of epithelial barrier; skin barrier development
renal system vasculature development (GO:0061437)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of vasculature of the renal system over time, from its formation to the mature structure.
renal system vasculature morphogenesis (GO:0061438)
Namespace: biological_process
Definition: The process in which the renal system vasculature is generated and organized. Morphogenesis pertains to the creation of form.
kidney vasculature morphogenesis (GO:0061439)
Namespace: biological_process
Definition: The process in which the kidney vasculature is generated and organized. Morphogenesis pertains to the creation of form.
kidney vasculature development (GO:0061440)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the vasculature of the kidney over time, from its formation to the mature structure.
cardiac muscle cell fate determination (GO:0061442)
Namespace: biological_process
Definition: The process involved in cardiac muscle cell fate commitment. Once determination has taken place, a cell becomes committed to differentiate down a particular pathway regardless of its environment.
endocardial cushion cell differentiation (GO:0061443)
Namespace: biological_process
Definition: The process in which a relatively unspecialized cell acquires the specialized structural and/or functional features of an endocardial cushion cell.
endocardial cushion cell development (GO:0061444)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of an endocardial cushion cell over time, from its formation to the mature state.
endocardial cushion cell fate commitment (GO:0061445)
Namespace: biological_process
Definition: The commitment of a cell to an endocardial cushion cell fate and its capacity to differentiate into an endocardial cushion cell.
endocardial cushion cell fate determination (GO:0061446)
Namespace: biological_process
Definition: The process involved in endocardial cushion cell fate commitment. Once determination has taken place, a cell becomes committed to differentiate down a particular pathway regardless of its environment.
endocardial cushion cell fate specification (GO:0061447)
Namespace: biological_process
Definition: The process involved in the specification of endocardial cushion cell identity. Once specification has taken place, a cell will be committed to differentiate down a specific pathway if left in its normal environment.
connective tissue development (GO:0061448)
Namespace: biological_process
Definition: The progression of a connective tissue over time, from its formation to the mature structure.
olfactory bulb tufted cell development (GO:0061449)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of an olfactory bulb tufted cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell.
trophoblast cell migration (GO:0061450)
Namespace: biological_process
Definition: Trophoblast cell migration that is accomplished by extension and retraction of a pseudopodium. Trophoblast cells line the outside of the blastocyst.
retrotrapezoid nucleus development (GO:0061451)
Namespace: biological_process
Definition: The progression of the retrotrapezoid nucleus (RTN) over time from it's initial formation to its mature state. The retrotrapezoid nucleus is a group of neurons in the rostral medulla, which are responsible regulating respiration.
retrotrapezoid nucleus neuron differentiation (GO:0061452)
Namespace: biological_process
Definition: The process in which a relatively unspecialized cell acquires specialized features of a neuron whose cell body resides in the retrotrapezoid nucleus.
interstitial cell of Cajal differentiation (GO:0061453)
Namespace: biological_process
Definition: The process in which a relatively unspecialized cell acquires specialized features of an interstitial cell of Cajal. An interstitial cell of Cajal is an intestinal neuroepithelial cell that serves as a pacemaker to trigger gut contraction.
Synonyms: ICC differentiation
release of sequestered calcium ion into cytosol by Golgi (GO:0061454)
Namespace: biological_process
Definition: The directed movement of calcium ions (Ca2+) out of the Golgi apparatus into the cytosol.
Synonyms: Golgi calcium ion export
obsolete mesenchymal stem cell migration involved in uteric bud morphogenesis (GO:0061456)
Namespace: biological_process
Definition: OBSOLETE. The orderly movement of a mesenchymal stem cell from one site to another contributing to the shaping of the ureteric bud. A mesenchymal stem cell, or MSC, is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized mesenchymal cells.
Comment: This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.
obsolete mesonephric cell migration involved in male gonad development (GO:0061457)
Namespace: biological_process
Definition: OBSOLETE. The orderly movement of a cell from the mesonephros to the male gonad, contributing to its development.
Comment: This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.
reproductive system development (GO:0061458)
Namespace: biological_process
Definition: The progression of the reproductive system over time from its formation to the mature structure. The reproductive system consists of the organs that function in reproduction.
protein localization to lysosome (GO:0061462)
Namespace: biological_process
Definition: A process in which a protein is transported to, or maintained in, a location within a lysosome.
O-acetyl-ADP-ribose deacetylase activity (GO:0061463)
Namespace: molecular_function
Definition: Catalysis of the reaction O-acetyl-ADP-ribose + H2O = ADP-ribose + acetate. Removes the acetyl group from either the 2'' or 3'' position of O-acetyl-ADP-ribose.
obsolete plasma membrane part of cell-substrate junction (GO:0061464)
Namespace: cellular_component
Definition: OBSOLETE. The part of the plasma membrane that contributes to the structure of a cell-substrate junction.
Comment: The reasons for obsoletion are that (1) this term does not have any gene products associated with them and (2) it can be represented as a GO-CAM.
obsolete plasma membrane part of hemidesmosome (GO:0061465)
Namespace: cellular_component
Definition: OBSOLETE. The part of the plasma membrane that contributes to the structure of a hemidesmosome.
Comment: The reasons for obsoletion are that (1) this term does not have any gene products associated with them and (2) it can be represented as a GO-CAM.
obsolete plasma membrane part of cell junction (GO:0061466)
Namespace: cellular_component
Definition: OBSOLETE. The part of the plasma membrane that contributes to the structure of a cell junction.
Comment: The reasons for obsoletion are that (1) this term does not have any gene products associated with them and (2) it can be represented as a GO-CAM.
karyomere (GO:0061468)
Namespace: cellular_component
Definition: A membrane-bound intermediate cleavage-stage structure of individual or groups of chromosomes that coalesces and fuses with other karyomeres to form a nucleus during interphase. Karyomere formation occurs in blastomeres undergoing rapid cell division.
regulation of type B pancreatic cell proliferation (GO:0061469)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of type B pancreatic cell proliferation.
T follicular helper cell differentiation (GO:0061470)
Namespace: biological_process
Definition: The process in which a relatively unspecialized T cell acquires specialized features of a mature T follicular helper cell.
Synonyms: T-helper follicular cell differentiation
karyomere assembly (GO:0061471)
Namespace: biological_process
Definition: The process where the nuclear membrane engulfs condensed chromosomes to form karyomeres during M phase of the mitotic cell cycle.
karyomere membrane fusion (GO:0061472)
Namespace: biological_process
Definition: Process whereby karyomere membranes fuse during interphase to form a single lobed nucleus.
murein tripeptide carboxypeptidase activity (GO:0061473)
Namespace: molecular_function
Definition: Catalysis of the reaction: L-alanyl-gamma-D-glutamyl-meso-diaminoheptanedioate (murein tripeptide) + H2O = L-alanyl-D-glutamate + meso-2,6-diaminoheptanedioate.
phagolysosome membrane (GO:0061474)
Namespace: cellular_component
Definition: The lipid bilayer surrounding a phagolysosome.
cytosolic valyl-tRNA aminoacylation (GO:0061475)
Namespace: biological_process
Definition: The process of coupling valine to valyl-tRNA in the cytosol, catalyzed by valyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
response to anticoagulant (GO:0061476)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an anticoagulant stimulus.
response to aromatase inhibitor (GO:0061477)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an aromatase inhibitor stimulus.
response to platelet aggregation inhibitor (GO:0061478)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a platelet aggregation inhibitor stimulus.