LiteFold/GO huggingface dataset:
jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway (GO:0009871)
Namespace: biological_process
Definition: The series of molecular signals mediated by ethylene (ethene) involved in jasmonic acid/ethylene dependent systemic resistance.
Synonyms: ethene mediated signaling pathway (jasmonic acid/ethene-dependent systemic resistance); ethylene mediated signaling pathway (jasmonic acid/ethylene-dependent systemic resistance); jasmonic acid and ethene-dependent systemic resistance, ethene mediated signaling pathway; jasmonic acid/ethene-dependent systemic resistance, ethene mediated signaling pathway; jasmonic acid/ethene-dependent systemic resistance, ethene mediated signalling pathway; jasmonic acid/ethylene-dependent systemic resistance, ethylene mediated signaling pathway; jasmonic acid/ethylene-dependent systemic resistance, ethylene mediated signalling pathway
obsolete gametophytic self-incompatibility (GO:0009872)
Namespace: biological_process
Definition: OBSOLETE. A mechanism that functions to prevent self-fertilization in flowering plants that is determined by the diploid genotype of the parent plant. In sporophytic incompatibility the pollen does not germinate, consequently fertilization does not take place.
Synonyms: gametophytic self-incompatibility
Comment: This term was made obsolete because it represents a phenotype.
ethylene-activated signaling pathway (GO:0009873)
Namespace: biological_process
Definition: The series of molecular signals generated by the reception of ethylene (ethene, C2H4) by a receptor and ending with modulation of a cellular process, e.g. transcription.
Synonyms: ethene mediated signaling pathway; ethene mediated signalling pathway; ethylene mediated signaling pathway; ethylene mediated signalling pathway; ethylene signal transduction; ethylene signaling pathway
obsolete sporophytic self-incompatibility (GO:0009874)
Namespace: biological_process
Definition: OBSOLETE. A mechanism that functions to prevent self-fertilization in flowering plants that is determined by the diploid genotype of the parent plant. In sporophytic incompatibility the pollen does not germinate, consequently fertilization does not take place.
Synonyms: sporophytic self-incompatibility
Comment: This term was made obsolete because it represents a phenotype.
pollen-pistil interaction (GO:0009875)
Namespace: biological_process
Definition: The interaction between a pollen grain and pistil.
Synonyms: pollen-gynoecium interaction
pollen adhesion (GO:0009876)
Namespace: biological_process
Definition: The process in which pollen deposited on the stigma adheres to cells of the stigma.
nodulation (GO:0009877)
Namespace: biological_process
Definition: The formation of nitrogen-fixing root nodules on plant roots.
Synonyms: nodule development; nodule formation; nodule morphogenesis
determination of radial symmetry (GO:0009879)
Namespace: biological_process
Definition: The establishment of an organism's body plan or a part of an organism such that it is symmetric around a central axis.
Synonyms: determination of radial asymmetry
embryonic pattern specification (GO:0009880)
Namespace: biological_process
Definition: The process that results in the patterns of cell differentiation that will arise in an embryo.
Synonyms: embryonic pattern biosynthesis; embryonic pattern formation; ventral/lateral system
photoreceptor activity (GO:0009881)
Namespace: molecular_function
Definition: The function of absorbing and responding to incidental electromagnetic radiation, particularly visible light. The response may involve a change in conformation.
Synonyms: blue-sensitive opsin; green-sensitive opsin; long-wave-sensitive opsin; opsin; red-sensitive opsin; short-wave-sensitive opsin; UV-sensitive opsin; violet-sensitive opsin
red or far-red light photoreceptor activity (GO:0009883)
Namespace: molecular_function
Definition: The function of absorbing and responding to electromagnetic radiation with a wavelength of approximately 660-730nm. The response may involve a change in conformation.
Synonyms: red/far-red light photoreceptor activity
transmembrane histidine kinase cytokinin receptor activity (GO:0009885)
Namespace: molecular_function
Definition: Combining with a cytokinin and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP + a protein-L-histidine = ADP + a protein-L-histidine phosphate.
post-embryonic animal morphogenesis (GO:0009886)
Namespace: biological_process
Definition: The process, occurring after animal embryonic development, by which anatomical structures are generated and organized.
Synonyms: post-embryonic morphogenesis of an anatomical structure
animal organ morphogenesis (GO:0009887)
Namespace: biological_process
Definition: Morphogenesis of an animal organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process in which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions.
Synonyms: histogenesis and organogenesis
tissue development (GO:0009888)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of a tissue over time, from its formation to the mature structure.
Synonyms: histogenesis; histogenesis and organogenesis
negative regulation of biosynthetic process (GO:0009890)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the rate of the chemical reactions and pathways resulting in the formation of substances.
Synonyms: down regulation of biosynthetic process; down-regulation of biosynthetic process; downregulation of biosynthetic process; inhibition of biosynthetic process; negative regulation of anabolism; negative regulation of biosynthesis; negative regulation of formation; negative regulation of synthesis
positive regulation of biosynthetic process (GO:0009891)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of substances.
Synonyms: activation of biosynthetic process; positive regulation of anabolism; positive regulation of biosynthesis; positive regulation of formation; positive regulation of synthesis; stimulation of biosynthetic process; up regulation of biosynthetic process; up-regulation of biosynthetic process; upregulation of biosynthetic process
negative regulation of metabolic process (GO:0009892)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism.
Synonyms: down regulation of metabolic process; down-regulation of metabolic process; downregulation of metabolic process; inhibition of metabolic process; inhibition of organismal metabolic process; negative regulation of metabolism; negative regulation of multicellular organismal metabolic process; negative regulation of organismal metabolism
positive regulation of metabolic process (GO:0009893)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism.
Synonyms: activation of metabolic process; positive regulation of metabolism; positive regulation of multicellular organismal metabolic process; positive regulation of organismal metabolism; stimulation of metabolic process; stimulation of organismal metabolic process; up regulation of metabolic process; up-regulation of metabolic process; up-regulation of organismal metabolic process; upregulation of metabolic process
regulation of catabolic process (GO:0009894)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate, or extent of the chemical reactions and pathways resulting in the breakdown of substances.
Synonyms: regulation of breakdown; regulation of catabolism; regulation of degradation
negative regulation of catabolic process (GO:0009895)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of substances.
Synonyms: down regulation of catabolic process; down-regulation of catabolic process; downregulation of catabolic process; inhibition of catabolic process; negative regulation of breakdown; negative regulation of catabolism; negative regulation of degradation
positive regulation of catabolic process (GO:0009896)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of substances.
Synonyms: activation of catabolic process; positive regulation of breakdown; positive regulation of catabolism; positive regulation of degradation; stimulation of catabolic process; up regulation of catabolic process; up-regulation of catabolic process; upregulation of catabolic process
external side of plasma membrane (GO:0009897)
Namespace: cellular_component
Definition: The leaflet of the plasma membrane that faces the extracellular side of the cell, including any protein embedded in, attached to, or peripherally associated with it.
Synonyms: external leaflet of plasma membrane; juxtamembrane; outer surface of cytoplasmic membrane
cytoplasmic side of plasma membrane (GO:0009898)
Namespace: cellular_component
Definition: The leaflet of the plasma membrane that faces the cytoplasm, including any protein embedded in, attached to, or peripherally associated with it.
Synonyms: internal leaflet of plasma membrane; internal side of plasma membrane; juxtamembrane
ent-kaurene synthase activity (GO:0009899)
Namespace: molecular_function
Definition: Catalysis of the reaction: ent-copalyl diphosphate = ent-kaur-16-ene + diphosphate.
Synonyms: ent-copalyl-diphosphate diphosphate-lyase (cyclizing); ent-copalyl-diphosphate diphosphate-lyase (cyclizing, ent-kaurene-forming); ent-kaurene synthase B activity; ent-kaurene synthetase B activity
dehiscence (GO:0009900)
Namespace: biological_process
Definition: The opening of an anther, fruit or other structure, which permits the escape of reproductive bodies contained within it.
anther dehiscence (GO:0009901)
Namespace: biological_process
Definition: The dehiscence of an anther to release the pollen grains contained within it.
chloroplast relocation (GO:0009902)
Namespace: biological_process
Definition: The process in which chloroplasts in photosynthetic cells migrate toward illuminated sites to optimize photosynthesis and move away from excessively illuminated areas to protect the photosynthetic machinery.
Synonyms: chloroplast movement
chloroplast avoidance movement (GO:0009903)
Namespace: biological_process
Definition: The relocation process in which chloroplasts in photosynthetic cells avoid strong light and move away from it in order to preserve the photosynthetic machinery.
Synonyms: high-fluence-rate response
chloroplast accumulation movement (GO:0009904)
Namespace: biological_process
Definition: The relocation process in which chloroplasts in photosynthetic cells move toward a brighter area in a cell to optimize photosynthesis.
Synonyms: low-fluence-rate response
ent-copalyl diphosphate synthase activity (GO:0009905)
Namespace: molecular_function
Definition: Catalysis of the reaction: all-trans-geranylgeranyl diphosphate = ent-copalyl diphosphate.
Synonyms: diterpene cyclase activity; ent-copalyl-diphosphate lyase (decyclizing); ent-kaurene synthase A activity; ent-kaurene synthetase A activity
response to photoperiod, red light (GO:0009907)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a red light photoperiod stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm.
flower development (GO:0009908)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the flower over time, from its formation to the mature structure. The flower is the reproductive structure in a plant, and its development begins with the transition of the vegetative or inflorescence meristem into a floral meristem.
regulation of flower development (GO:0009909)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of flower development.
negative regulation of flower development (GO:0009910)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of flower development.
Synonyms: down regulation of flower development; down-regulation of flower development; downregulation of flower development; inhibition of flower development
positive regulation of flower development (GO:0009911)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of flower development.
Synonyms: activation of flower development; stimulation of flower development; up regulation of flower development; up-regulation of flower development; upregulation of flower development
auditory receptor cell fate commitment (GO:0009912)
Namespace: biological_process
Definition: The process in which the cellular identity of auditory hair cells is acquired and determined.
Synonyms: auditory hair cell fate commitment
hormone transport (GO:0009914)
Namespace: biological_process
Definition: The directed movement of hormones into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
phloem sucrose loading (GO:0009915)
Namespace: biological_process
Definition: The process of loading sucrose into the sieve tube or companion cell of the phloem for long distance transport from source to sink.
alternative oxidase activity (GO:0009916)
Namespace: molecular_function
Definition: Catalysis of the oxidation of ubiquinol by diverting electrons from the standard electron transfer chain, transferring them from ubiquinol to oxygen and generating water as the product.
obsolete sterol 5-alpha reductase activity (GO:0009917)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the removal of a C-5 double bond in the B ring of a sterol.
Comment: This term was obsoleted because it represents the same activity as 3-oxo-5alpha-steroid 4-dehydrogenase (NADP+) ; GO:0047751.
obsolete sterol delta7 reductase activity (GO:0009918)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: 5-dehydroepisterol = 24-methylenecholesterol.
Synonyms: sterol delta-7 reductase activity
Comment: This term was obsoleted because it represents the same reaction as 7-dehydrocholesterol reductase activity ; GO:0047598.
obsolete cytokinesis (sensu Viridiplantae) (GO:0009919)
Namespace: biological_process
Definition: OBSOLETE. The division of a cell into two daughter cells with cell walls.
Synonyms: cytokinesis (sensu Viridiplantae)
Comment: This term was made obsolete because its meaning was changed significantly.
cell plate formation involved in plant-type cell wall biogenesis (GO:0009920)
Namespace: biological_process
Definition: The cell cycle process in which the cell plate is formed at the equator of the spindle in the dividing cells during early telophase. An example of this is found in Arabidopsis thaliana.
Synonyms: cell plate formation involved in cellulose and pectin-containing cell wall biogenesis
auxin efflux carrier complex (GO:0009921)
Namespace: cellular_component
Definition: The protein complex associated with the plasma membrane of certain plant cells (e.g. root cortex, epidermal cells) that functions to transport auxin out of the cell.
fatty acid elongase activity (GO:0009922)
Namespace: molecular_function
Definition: Catalysis of the reaction: a very-long-chain acyl-CoA + H+ + malonyl-CoA = a very-long-chain 3-oxoacyl-CoA + CO2 + CoA. This reaction is the first (condensation) step of the four-step fatty acid elongation cycle in the endoplasmic reticulum that extends fatty acids of C-16 or longer with an additional 2-C unit.
Synonyms: condensing enzyme; elongation of very long chain fatty acids activity; ELOVL; very-long-chain 3-ketoacyl-CoA synthase; very-long-chain 3-oxoacyl-CoA synthase; very-long-chain beta-ketoacyl-CoA synthase
fatty acid elongase complex (GO:0009923)
Namespace: cellular_component
Definition: A tetrameric complex of four different subunits which catalyzes the elongation of a fatty acid chain 2 carbon units at a time in the synthesis of very long chain fatty acids.
basal plasma membrane (GO:0009925)
Namespace: cellular_component
Definition: The region of the plasma membrane located at the basal end of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis.
auxin polar transport (GO:0009926)
Namespace: biological_process
Definition: The unidirectional movement of auxin in the stem from tip to base along the vector of gravity or basipetally.
histidine phosphotransfer kinase activity (GO:0009927)
Namespace: molecular_function
Definition: Serves as a phospho-His intermediate enabling the transfer of phospho group between a hybrid kinase and a response regulator.
longitudinal side of cell surface (GO:0009930)
Namespace: cellular_component
Definition: The side of the cell parallel to the zygotic axis.
calcium-dependent protein serine/threonine kinase activity (GO:0009931)
Namespace: molecular_function
Definition: Calcium-dependent catalysis of the reactions: ATP + a protein serine = ADP + protein serine phosphate; and ATP + a protein threonine = ADP + protein threonine phosphate.
cell tip growth (GO:0009932)
Namespace: biological_process
Definition: Growth that occurs specifically at the tip of a cell.
obsolete nutrient import (GO:0009935)
Namespace: biological_process
Definition: OBSOLETE. The directed movement of nutrients into a cell or organelle.
Synonyms: nutrient import; nutrient uptake
Comment: This term was made obsolete because "nutrient" is not defined, and does not have a consistent meaning.
obsolete expansin (GO:0009936)
Namespace: molecular_function
Definition: OBSOLETE. A group of proteins located within the cell walls of plants, both dicots and grasses, that play an essential role in loosening cell walls during cell growth. They are hydrophobic, non glycosylated proteins of about 30kDa.
Synonyms: expansin
Comment: This term was made obsolete because it represents a gene product.
regulation of gibberellic acid mediated signaling pathway (GO:0009937)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of gibberellic acid mediated signaling.
Synonyms: regulation of gibberellic acid mediated signalling
negative regulation of gibberellic acid mediated signaling pathway (GO:0009938)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of gibberellic acid mediated signaling activity.
Synonyms: down regulation of gibberellic acid mediated signaling; down-regulation of gibberellic acid mediated signaling; downregulation of gibberellic acid mediated signaling; inhibition of gibberellic acid mediated signaling; negative regulation of gibberellic acid mediated signalling
positive regulation of gibberellic acid mediated signaling pathway (GO:0009939)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of gibberellic acid mediated signaling activity.
Synonyms: activation of gibberellic acid mediated signaling; positive regulation of gibberellic acid mediated signalling; stimulation of gibberellic acid mediated signaling; up regulation of gibberellic acid mediated signaling; up-regulation of gibberellic acid mediated signaling; upregulation of gibberellic acid mediated signaling
obsolete amino-terminal vacuolar sorting propeptide binding (GO:0009940)
Namespace: molecular_function
Definition: OBSOLETE. Binding to an amino terminal propeptide, which functions as a sorting signal to sort away the soluble vacuolar protein from Golgi to lytic vacuole via clathrin-coated vesicles.
Comment: This term was obsolete because it is out of scope for GO; target regions of interactions are not captured.
chloroplast envelope (GO:0009941)
Namespace: cellular_component
Definition: The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space.
longitudinal axis specification (GO:0009942)
Namespace: biological_process
Definition: The establishment, maintenance and elaboration of the longitudinal axis. In plants, this is the axis that runs from the shoot to the root.
Synonyms: apical-basal pattern specification; longitudinal axis determination
adaxial/abaxial axis specification (GO:0009943)
Namespace: biological_process
Definition: The establishment, maintenance and elaboration of the adaxial / abaxial axis. Adaxial refers to being situated toward an axis of an anatomical structure. Abaxial refers to being situated away from an axis of an anatomical structure.
Synonyms: adaxial/abaxial determination
polarity specification of adaxial/abaxial axis (GO:0009944)
Namespace: biological_process
Definition: The process resulting in the establishment of polarity along the adaxial/abaxial axis. Adaxial refers to being situated toward an axis of an anatomical structure. Abaxial refers to being situated away from an axis of an anatomical structure.
radial axis specification (GO:0009945)
Namespace: biological_process
Definition: The establishment, maintenance and elaboration of an axis that initiates at a point and radiates outward from the point.
proximal/distal axis specification (GO:0009946)
Namespace: biological_process
Definition: The establishment, maintenance and elaboration of the proximal/distal axis. The proximal/distal axis is defined by a line that runs from main body (proximal end) of an organism outward (distal end).
Synonyms: proximal/distal axis determination; proximodistal axis specification
centrolateral axis specification (GO:0009947)
Namespace: biological_process
Definition: The establishment, maintenance and elaboration of the centrolateral axis. In plants, this axis is duplicated and runs from the midrib to the margin of the leaf.
Synonyms: centrolateral axis determination; mediolateral axis specification
anterior/posterior axis specification (GO:0009948)
Namespace: biological_process
Definition: The establishment, maintenance and elaboration of the anterior/posterior axis. The anterior-posterior axis is defined by a line that runs from the head or mouth of an organism to the tail or opposite end of the organism.
Synonyms: anterior/posterior axis determination
polarity specification of anterior/posterior axis (GO:0009949)
Namespace: biological_process
Definition: Any process resulting in the establishment of polarity along the anterior/posterior axis.
dorsal/ventral axis specification (GO:0009950)
Namespace: biological_process
Definition: The establishment, maintenance and elaboration of the dorsal/ventral axis. The dorsal/ventral axis is defined by a line that runs orthogonal to both the anterior/posterior and left/right axes. The dorsal end is defined by the upper or back side of an organism. The ventral end is defined by the lower or front side of an organism.
Synonyms: dorsal-ventral axis specification; dorsal/ventral axis determination; dorsoventral axis specification
anterior/posterior pattern specification (GO:0009952)
Namespace: biological_process
Definition: The regionalization process in which specific areas of cell differentiation are determined along the anterior-posterior axis. The anterior-posterior axis is defined by a line that runs from the head or mouth of an organism to the tail or opposite end of the organism.
Synonyms: anterior/posterior pattern formation