LiteFold/GO huggingface dataset:
nitrogen catabolite activation of transcription (GO:0090294)
Namespace: biological_process
Definition: A transcription regulation process in which the presence of one nitrogen source leads to an increase in the frequency, rate, or extent of transcription of specific genes involved in the metabolism of other nitrogen sources.
Synonyms: positive regulation of transcription by nitrogen catabolites
nitrogen catabolite repression of transcription (GO:0090295)
Namespace: biological_process
Definition: A transcription regulation process in which the presence of one nitrogen source leads to a decrease in the frequency, rate, or extent of transcription of specific genes involved in the metabolism of other nitrogen sources.
Synonyms: negative regulation of transcription by nitrogen catabolites; nitrogen catabolite repression
regulation of mitochondrial DNA replication (GO:0090296)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency or extent of the process in which new strands of DNA are synthesized in the mitochondrion.
Synonyms: regulation of mitochondrial DNA synthesis
positive regulation of mitochondrial DNA replication (GO:0090297)
Namespace: biological_process
Definition: Any process that increases the rate, frequency or extent of the process in which new strands of DNA are synthesized in the mitochondrion.
Synonyms: positive regulation of mitochondrial DNA synthesis
negative regulation of mitochondrial DNA replication (GO:0090298)
Namespace: biological_process
Definition: Any process that decreases the rate, frequency or extent of the process in which new strands of DNA are synthesized in the mitochondrion.
Synonyms: negative regulation of mitochondrial DNA synthesis
regulation of neural crest formation (GO:0090299)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency, or extent of neural crest formation. Neural crest formation is the formation of the specialized region of ectoderm between the neural ectoderm (neural plate) and non-neural ectoderm. The neural crest gives rise to the neural crest cells that migrate away from this region as neural tube formation proceeds.
positive regulation of neural crest formation (GO:0090300)
Namespace: biological_process
Definition: Any process that increases the rate, frequency, or extent of neural crest formation. Neural crest formation is the formation of the specialized region of ectoderm between the neural ectoderm (neural plate) and non-neural ectoderm. The neural crest gives rise to the neural crest cells that migrate away from this region as neural tube formation proceeds.
negative regulation of neural crest formation (GO:0090301)
Namespace: biological_process
Definition: Any process that decreases the rate, frequency, or extent of neural crest formation. Neural crest formation is the formation of the specialized region of ectoderm between the neural ectoderm (neural plate) and non-neural ectoderm. The neural crest gives rise to the neural crest cells that migrate away from this region as neural tube formation proceeds.
positive regulation of wound healing (GO:0090303)
Namespace: biological_process
Definition: Any process that increases the rate, frequency, or extent of the series of events that restore integrity to a damaged tissue, following an injury.
obsolete nucleic acid phosphodiester bond hydrolysis (GO:0090305)
Namespace: biological_process
Definition: OBSOLETE. The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis.
Synonyms: nucleic acid cleavage
Comment: The reason for obsoletion is that this term represents a molecular function.
meiotic spindle assembly (GO:0090306)
Namespace: biological_process
Definition: The aggregation, arrangement and bonding together of a set of components to form the spindle that contributes to the process of meiosis.
Synonyms: spindle assembly involved in meiosis
mitotic spindle assembly (GO:0090307)
Namespace: biological_process
Definition: Mitotic bipolar spindle assembly begins with spindle microtubule nucleation from the separated spindle pole body, includes spindle elongation during prometaphase, and is complete when all kinetochores are stably attached the spindle, and the spindle assembly checkpoint is satisfied.
Synonyms: spindle assembly involved in mitosis
obsolete regulation of DNA methylation-dependent heterochromatin formation (GO:0090308)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the rate, frequency, or extent of DNA methylation-dependent heterochromatin formation.
Synonyms: regulation of DNA methylation-dependent heterochromatin assembly; regulation of methylation-dependent chromatin silencing
Comment: The reason for obsoletion is that this term was an unnecessary grouping term.
obsolete positive regulation of DNA methylation-dependent heterochromatin formation (GO:0090309)
Namespace: biological_process
Definition: OBSOLETE. Any process that increases the rate, frequency, or extent of DNA methylation-dependent heterochromatin formation.
Synonyms: positive regulation of DNA methylation-dependent heterochromatin assembly; positive regulation of methylation-dependent chromatin silencing
Comment: The reason for obsoletion is that this term was added in error. There is no evidence for this biological process.
negative regulation of DNA methylation-dependent heterochromatin formation (GO:0090310)
Namespace: biological_process
Definition: Any process that decreases the rate, frequency, or extent of DNA methylation-dependent heterochromatin formation.
Synonyms: negative regulation of DNA methylation-dependent heterochromatin assembly; negative regulation of methylation-dependent chromatin silencing
regulation of protein deacetylation (GO:0090311)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency, or extent of protein deacetylation, the removal of an acetyl group from a protein amino acid. An acetyl group is CH3CO-, derived from acetic [ethanoic] acid.
Synonyms: regulation of protein amino acid deacetylation
positive regulation of protein deacetylation (GO:0090312)
Namespace: biological_process
Definition: Any process that increases the rate, frequency, or extent of protein deacetylation, the removal of an acetyl group from a protein amino acid. An acetyl group is CH3CO-, derived from acetic [ethanoic] acid.
Synonyms: positive regulation of protein amino acid deacetylation
regulation of protein targeting to membrane (GO:0090313)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the process of directing proteins towards a membrane, usually using signals contained within the protein.
positive regulation of protein targeting to membrane (GO:0090314)
Namespace: biological_process
Definition: Any process that increases the frequency, rate or extent of the process of directing proteins towards a membrane, usually using signals contained within the protein.
negative regulation of protein targeting to membrane (GO:0090315)
Namespace: biological_process
Definition: Any process that decreases the frequency, rate or extent of the process of directing proteins towards a membrane, usually using signals contained within the protein.
positive regulation of intracellular protein transport (GO:0090316)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of the directed movement of proteins within cells.
negative regulation of intracellular protein transport (GO:0090317)
Namespace: biological_process
Definition: Any process that decreases the frequency, rate or extent of the directed movement of proteins within cells.
regulation of chylomicron remodeling (GO:0090318)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency, or extent of chylomicron remodeling. Chylomicron remodeling is the acquisition, loss or modification of a protein or lipid within a chylomicron, including the hydrolysis of triglyceride by lipoprotein lipase and the subsequent loss of free fatty acid.
Synonyms: regulation of chylomicron remodelling
positive regulation of chylomicron remodeling (GO:0090319)
Namespace: biological_process
Definition: Any process that increases the rate, frequency, or extent of chylomicron remodeling. Chylomicron remodeling is the acquisition, loss or modification of a protein or lipid within a chylomicron, including the hydrolysis of triglyceride by lipoprotein lipase and the subsequent loss of free fatty acid.
Synonyms: positive regulation of chylomicron remodelling
regulation of chylomicron remnant clearance (GO:0090320)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency or extent of chylomicron remnant clearance. Chylomicron clearance is the process in which a chylomicron remnant is removed from the blood via receptor-mediated endocytosis into liver cells and its constituent parts degraded.
positive regulation of chylomicron remnant clearance (GO:0090321)
Namespace: biological_process
Definition: Any process that increases the rate, frequency or extent of chylomicron remnant clearance. Chylomicron clearance is the process in which a chylomicron remnant is removed from the blood via receptor-mediated endocytosis into liver cells and its constituent parts degraded.
obsolete prostaglandin secretion involved in immune response (GO:0090323)
Namespace: biological_process
Definition: OBSOLETE. The regulated release of a prostaglandin that contributes to the immune response. Prostaglandins are a group of biologically active metabolites which contain a cyclopentane ring.
Comment: This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.
negative regulation of oxidative phosphorylation (GO:0090324)
Namespace: biological_process
Definition: Any process that decreases the frequency, rate or extent of the chemical reactions and pathways resulting in the phosphorylation of ADP to ATP that accompanies the oxidation of a metabolite through the operation of the respiratory chain. Oxidation of compounds establishes a proton gradient across the membrane, providing the energy for ATP synthesis.
regulation of locomotion involved in locomotory behavior (GO:0090325)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate, or extent of the self-propelled movement of a cell or organism from one location to another in a behavioral context; the aspect of locomotory behavior having to do with movement.
positive regulation of locomotion involved in locomotory behavior (GO:0090326)
Namespace: biological_process
Definition: Any process that increases the frequency, rate, or extent of the self-propelled movement of a cell or organism from one location to another in a behavioral context; the aspect of locomotory behavior having to do with movement.
negative regulation of locomotion involved in locomotory behavior (GO:0090327)
Namespace: biological_process
Definition: Any process that decreases the frequency, rate, or extent of the self-propelled movement of a cell or organism from one location to another in a behavioral context; the aspect of locomotory behavior having to do with movement.
regulation of DNA-templated DNA replication (GO:0090329)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency, or extent of DNA-templated DNA replication, the process in which new strands of DNA are synthesized.
Synonyms: regulation of DNA-dependent DNA replication
regulation of platelet aggregation (GO:0090330)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency or extent of platelet aggregation. Platelet aggregation is the adhesion of one platelet to one or more other platelets via adhesion molecules.
negative regulation of platelet aggregation (GO:0090331)
Namespace: biological_process
Definition: Any process that decreases the rate, frequency or extent of platelet aggregation. Platelet aggregation is the adhesion of one platelet to one or more other platelets via adhesion molecules.
Synonyms: platelet disaggregation
stomatal closure (GO:0090332)
Namespace: biological_process
Definition: The process of closing of stomata, pores in the epidermis of leaves and stems bordered by two guard cells and serving in gas exchange.
regulation of stomatal closure (GO:0090333)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency, or extent of stomatal closure. Stomatal closure is the process of closing of stomata, pores in the epidermis of leaves and stems bordered by two guard cells and serving in gas exchange.
regulation of cell wall (1->3)-beta-D-glucan biosynthetic process (GO:0090334)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency, or extent of the chemical reactions and pathways resulting in the formation of (1->3)-beta-D-glucans, compounds composed of glucose residues linked by (1->3)-beta-D-glucosidic bonds, found in the walls of cells.
Synonyms: regulation of cell wall 1,3-beta-D-glucan biosynthetic process; regulation of cell wall 1,3-beta-glucan biosynthetic process
regulation of brown fat cell differentiation (GO:0090335)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency, or extent of brown fat cell differentiation. Brown fat cell differentiation is the process in which a relatively unspecialized cell acquires specialized features of a brown adipocyte, an animal connective tissue cell involved in adaptive thermogenesis. Brown adipocytes contain multiple small droplets of triglycerides and a high number of mitochondria.
positive regulation of brown fat cell differentiation (GO:0090336)
Namespace: biological_process
Definition: Any process that increases the rate, frequency, or extent of brown fat cell differentiation. Brown fat cell differentiation is the process in which a relatively unspecialized cell acquires specialized features of a brown adipocyte, an animal connective tissue cell involved in adaptive thermogenesis. Brown adipocytes contain multiple small droplets of triglycerides and a high number of mitochondria.
regulation of formin-nucleated actin cable assembly (GO:0090337)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency, or extent of formin-nucleated actin cable assembly. Formin-nucleated actin cable assembly is the aggregation, arrangement and bonding together of a set of components to form a formin-nucleated actin cable. A formin-nucleated actin cable is an actin filament bundle that consists of short filaments organized into bundles of uniform polarity, and is nucleated by formins.
positive regulation of formin-nucleated actin cable assembly (GO:0090338)
Namespace: biological_process
Definition: Any process that increases the rate, frequency, or extent of formin-nucleated actin cable assembly. Formin-nucleated actin cable assembly is the aggregation, arrangement and bonding together of a set of components to form a formin-nucleated actin cable. A formin-nucleated actin cable is an actin filament bundle that consists of short filaments organized into bundles of uniform polarity, and is nucleated by formins.
negative regulation of formin-nucleated actin cable assembly (GO:0090339)
Namespace: biological_process
Definition: Any process that decreases the rate, frequency, or extent of formin-nucleated actin cable assembly. Formin-nucleated actin cable assembly is the aggregation, arrangement and bonding together of a set of components to form a formin-nucleated actin cable. A formin-nucleated actin cable is an actin filament bundle that consists of short filaments organized into bundles of uniform polarity, and is nucleated by formins.
negative regulation of secretion of lysosomal enzymes (GO:0090341)
Namespace: biological_process
Definition: Any process that decreases the rate, frequency or extent of secretion of lysosomal enzymes, the controlled release of lysosomal enzymes by a cell.
obsolete regulation of cell aging (GO:0090342)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the rate, frequency, or extent of cell aging. Cell aging is the progression of the cell from its inception to the end of its lifespan.
Comment: This term was obsoleted because it represents a phenotype.
obsolete positive regulation of cell aging (GO:0090343)
Namespace: biological_process
Definition: OBSOLETE. Any process that increases the rate, frequency, or extent of cell aging. Cell aging is the progression of the cell from its inception to the end of its lifespan.
Comment: This term was obsoleted because it represents a phenotype.
obsolete negative regulation of cell aging (GO:0090344)
Namespace: biological_process
Definition: OBSOLETE. Any process that decreases the rate, frequency, or extent of cell aging. Cell aging is the progression of the cell from its inception to the end of its lifespan.
Comment: This term was obsoleted because it represents a phenotype.
organofluorine metabolic process (GO:0090346)
Namespace: biological_process
Definition: The chemical reactions and pathways involving organofluorine compounds, as carried out by individual cells.
regulation of organohalogen metabolic process (GO:0090347)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency or extent of the chemical reactions and pathways involving organohalogen compounds, as carried out by individual cells.
obsolete negative regulation of organohalogen metabolic process (GO:0090349)
Namespace: biological_process
Definition: OBSOLETE. Any process that decreases the rate, frequency or extent of the chemical reactions and pathways involving organohalogen compounds, as carried out by individual cells.
Comment: This term was obsoleted because it is an unnecessary grouping class.
negative regulation of organofluorine metabolic process (GO:0090350)
Namespace: biological_process
Definition: Any process that decreases the rate, frequency or extent of the chemical reactions and pathways involving organofluorine compounds, as carried out by individual cells.
seedling development (GO:0090351)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the seedling over time, beginning with seed germination and ending when the first adult leaves emerge.
regulation of nitrate assimilation (GO:0090352)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency, or extent of the uptake, from the environment, of nitrates, inorganic or organic salts and esters of nitric acid and the subsequent reduction of nitrate ion to other, less highly oxidized, inorganic nitrogenous substances.
polygalacturonase inhibitor activity (GO:0090353)
Namespace: molecular_function
Definition: Binds to and stops, prevents or reduces the activity of polygalacturonase.
regulation of auxin metabolic process (GO:0090354)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving auxins, plant hormones that regulate aspects of plant growth.
Synonyms: regulation of auxin metabolism
positive regulation of auxin metabolic process (GO:0090355)
Namespace: biological_process
Definition: Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving auxins, plant hormones that regulate aspects of plant growth.
Synonyms: positive regulation of auxin metabolism
negative regulation of auxin metabolic process (GO:0090356)
Namespace: biological_process
Definition: Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving auxins, plant hormones that regulate aspects of plant growth.
Synonyms: negative regulation of auxin metabolism
obsolete regulation of L-tryptophan metabolic process (GO:0090357)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid.
Synonyms: regulation of tryptophan metabolic process; regulation of tryptophan metabolism
Comment: The reason for obsoletion is that this term was an unnecessary grouping terms and only 'biosynthetic' or 'catabolic' process should be used.
obsolete positive regulation of L-tryptophan metabolic process (GO:0090358)
Namespace: biological_process
Definition: OBSOLETE. Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid.
Synonyms: positive regulation of tryptophan metabolic process; positive regulation of tryptophan metabolism
Comment: The reason for obsoletion is that this term was an unnecessary grouping terms and only 'biosynthetic' or 'catabolic' process should be used.
negative regulation of abscisic acid biosynthetic process (GO:0090359)
Namespace: biological_process
Definition: Any process that decreases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of abscisic acid.
Synonyms: negative regulation of abscisic acid biosynthesis
platelet-derived growth factor production (GO:0090360)
Namespace: biological_process
Definition: The appearance of any platelet-derived growth factor due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms.
regulation of platelet-derived growth factor production (GO:0090361)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency, or extent of the appearance of any platelet-derived growth factor due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.
positive regulation of platelet-derived growth factor production (GO:0090362)
Namespace: biological_process
Definition: Any process that increases the rate, frequency, or extent of the appearance of any platelet-derived growth factor due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.
obsolete regulation of proteasome core complex assembly (GO:0090363)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the rate, frequency, or extent of the aggregation, arrangement and bonding together of a mature, active 20S proteasome core particle complex that does not contain any regulatory particles.
Comment: This term was obsoleted because was too specific.
regulation of proteasome assembly (GO:0090364)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency, or extent of the aggregation, arrangement and bonding together of a mature, active proteasome complex.
regulation of mRNA modification (GO:0090365)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency, or extent of the covalent alteration of one or more nucleotides within an mRNA molecule to produce an mRNA molecule with a sequence that differs from that coded genetically.
Synonyms: regulation of mRNA editing
positive regulation of mRNA modification (GO:0090366)
Namespace: biological_process
Definition: Any process that increases the rate, frequency, or extent of the covalent alteration of one or more nucleotides within an mRNA molecule to produce an mRNA molecule with a sequence that differs from that coded genetically.
negative regulation of mRNA modification (GO:0090367)
Namespace: biological_process
Definition: Any process that decreases the rate, frequency, or extent of the covalent alteration of one or more nucleotides within an mRNA molecule to produce an mRNA molecule with a sequence that differs from that coded genetically.