LiteFold/GO huggingface dataset:
regulation of smooth muscle cell chemotaxis (GO:0071671)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate, or extent of smooth muscle cell chemotaxis.
negative regulation of smooth muscle cell chemotaxis (GO:0071672)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate, or extent of smooth muscle cell chemotaxis.
Synonyms: down regulation of smooth muscle cell chemotaxis; down-regulation of smooth muscle cell chemotaxis; downregulation of smooth muscle cell chemotaxis; inhibition of smooth muscle cell chemotaxis
positive regulation of smooth muscle cell chemotaxis (GO:0071673)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate, or extent of smooth muscle cell chemotaxis.
Synonyms: activation of smooth muscle cell chemotaxis; stimulation of smooth muscle cell chemotaxis; up regulation of smooth muscle cell chemotaxis; up-regulation of smooth muscle cell chemotaxis; upregulation of smooth muscle cell chemotaxis
mononuclear cell migration (GO:0071674)
Namespace: biological_process
Definition: The movement of a mononuclear cell within or between different tissues and organs of the body.
regulation of mononuclear cell migration (GO:0071675)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency or extent of mononuclear cell migration. Mononuclear cell migration is the movement of a mononuclear cell within or between different tissues and organs of the body.
negative regulation of mononuclear cell migration (GO:0071676)
Namespace: biological_process
Definition: Any process that decreases the rate, frequency or extent of mononuclear cell migration. Mononuclear cell migration is the movement of a mononuclear cell within or between different tissues and organs of the body.
Synonyms: down regulation of mononuclear cell migration; down-regulation of mononuclear cell migration; downregulation of mononuclear cell migration; inhibition of mononuclear cell migration
positive regulation of mononuclear cell migration (GO:0071677)
Namespace: biological_process
Definition: Any process that increases the rate, frequency or extent of mononuclear cell migration. Mononuclear cell migration is the movement of a mononuclear cell within or between different tissues and organs of the body.
Synonyms: activation of mononuclear cell migration; stimulation of mononuclear cell migration; up regulation of mononuclear cell migration; up-regulation of mononuclear cell migration; upregulation of mononuclear cell migration
olfactory bulb axon guidance (GO:0071678)
Namespace: biological_process
Definition: The process in which the migration of an axon growth cone of a neuron in the olfactory bulb is directed to its target in the brain in response to a combination of attractive and repulsive cues.
Synonyms: olfactory bulb axon pathfinding
response to indole-3-methanol (GO:0071680)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an indole-3-methanol stimulus.
Synonyms: response to indole-3-carbinol
cellular response to indole-3-methanol (GO:0071681)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an indole-3-methanol stimulus.
Synonyms: cellular response to indole-3-carbinol
endocytic vesicle lumen (GO:0071682)
Namespace: cellular_component
Definition: The volume enclosed by the membrane of an endocytic vesicle.
sensory dendrite (GO:0071683)
Namespace: cellular_component
Definition: A dendrite that is found on a sensory neuron, and directly transduces a sensory signal from the sensory neuron to another neuron.
organism emergence from protective structure (GO:0071684)
Namespace: biological_process
Definition: The developmental process in which an organism emerges from a surrounding protective structure such as an egg or pupa case.
NADH dehydrogenase complex (plastoquinone) (GO:0071685)
Namespace: cellular_component
Definition: An NADH dehydrogenase complex that catalyzes the transfer of electrons to plastoquinone. The complex is involved in the non-photochemical reduction of plastoquinones and the cyclic electron transport around photosystem I, and is found in plastid thylakoids.
obsolete horsetail nucleus (GO:0071686)
Namespace: cellular_component
Definition: OBSOLETE. The elongated nucleus which forms during the rapid oscillatory movement at meiotic prophase; characterized in Schizosaccharomyces pombe.
Comment: This term was made obsolete at the request of PomBase as the concept can be expressed by annotating to a less granular term and using annotation extensions.
obsolete horsetail nucleus leading edge (GO:0071687)
Namespace: cellular_component
Definition: OBSOLETE. The part of the horsetail nucleus where telomeres cluster under the SPB and that leads horsetail movement. The horsetail nucleus is the elongated nucleus which forms during the rapid oscillatory movement at meiotic prophase; characterized in Schizosaccharomyces pombe.
Comment: This term was made obsolete at the request of PomBase as the concept can be expressed by annotating to a less granular term and using annotation extensions.
striated muscle myosin thick filament assembly (GO:0071688)
Namespace: biological_process
Definition: The aggregation, arrangement and bonding together of proteins to form the myosin-based thick filaments of myofibrils in striated muscle.
muscle thin filament assembly (GO:0071689)
Namespace: biological_process
Definition: The aggregation, arrangement and bonding together of proteins to form the actin-based thin filaments of myofibrils in striated muscle.
cardiac muscle myosin thick filament assembly (GO:0071690)
Namespace: biological_process
Definition: The aggregation, arrangement and bonding together of proteins to form the myosin-based thick filaments of myofibrils in cardiac muscle.
cardiac muscle thin filament assembly (GO:0071691)
Namespace: biological_process
Definition: The aggregation, arrangement and bonding together of proteins to form the actin-based thin filaments of myofibrils in cardiac muscle.
protein localization to extracellular region (GO:0071692)
Namespace: biological_process
Definition: Any process in which a protein is transported from one specific location in the extracellular region to another, or maintained in a specific extracellular location.
Synonyms: protein localisation in extracellular region; protein localization in extracellular region
protein transport within extracellular region (GO:0071693)
Namespace: biological_process
Definition: The directed movement of proteins in the extracellular region, by means of some agent such as a transporter or pore.
maintenance of protein location in extracellular region (GO:0071694)
Namespace: biological_process
Definition: Any process in which a protein is maintained in a specific location within the extracellular region and is prevented from moving elsewhere.
anatomical structure maturation (GO:0071695)
Namespace: biological_process
Definition: A developmental process, independent of morphogenetic (shape) change, that is required for an anatomical structure to attain its fully functional state.
ectodermal placode development (GO:0071696)
Namespace: biological_process
Definition: The progression of an ectodermal placode over time from its initial formation until its mature state. An ectodermal placode is a thickening of the ectoderm that is the primordium of many structures derived from the ectoderm.
ectodermal placode morphogenesis (GO:0071697)
Namespace: biological_process
Definition: The process in which the anatomical structures of an ectodermal placode are generated and organized. An ectodermal placode is a thickening of the ectoderm that is the primordium of many structures derived from the ectoderm.
olfactory placode development (GO:0071698)
Namespace: biological_process
Definition: The progression of the olfactory placode over time from its initial formation until its mature state. The olfactory placode is a thickening of the neural ectoderm in the head region of the vertebrate embryo which develops into the olfactory region of the nasal cavity.
olfactory placode morphogenesis (GO:0071699)
Namespace: biological_process
Definition: The process in which the anatomical structures of the olfactory placode are generated and organized. The olfactory placode is a thickening of the neural ectoderm in the head region of the vertebrate embryo which develops into the olfactory region of the nasal cavity.
olfactory placode maturation (GO:0071700)
Namespace: biological_process
Definition: A developmental process, independent of morphogenetic (shape) change, that is required for the olfactory placode to attain its fully functional state. The olfactory placode is a thickening of the neural ectoderm in the head region of the vertebrate embryo which develops into the olfactory region of the nasal cavity.
obsolete regulation of MAPK export from nucleus (GO:0071701)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of the directed movement of a MAP kinase from the nucleus to the cytoplasm.
Synonyms: regulation of cytoplasmic translocation of MAP kinase; regulation of cytoplasmic translocation of mitogen-activated protein kinase; regulation of MAPK export from cell nucleus; regulation of MAPK export out of nucleus; regulation of MAPK transport from nucleus to cytoplasm; regulation of MAPK-nucleus export
Comment: The reason for obsoletion is that this term represents a specific substrate, out of scope for GO.
obsolete organic substance transport (GO:0071702)
Namespace: biological_process
Definition: OBSOLETE. The directed movement of organic substances into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore. An organic substance is a molecular entity that contains carbon.
Comment: The reason for obsoletion is that this term is an unnecessary grouping term.
obsolete detection of organic substance (GO:0071703)
Namespace: biological_process
Definition: OBSOLETE. The series of events in which an organic substance stimulus is received by a cell and converted into a molecular signal.
Comment: The reason for obsoletion is that this term is an unnecessary grouping term.
obsolete organic substance metabolic process (GO:0071704)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving an organic substance, any molecular entity containing carbon.
Synonyms: organic molecular entity metabolic process; organic molecular entity metabolism; organic substance metabolism
Comment: The reason for obsoletion is that this term is an unnecessary grouping term.
nitrogen compound transport (GO:0071705)
Namespace: biological_process
Definition: The directed movement of nitrogen-containing compounds into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
tumor necrosis factor superfamily cytokine production (GO:0071706)
Namespace: biological_process
Definition: The appearance of any member of the TNF superfamily due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.
Synonyms: TNF superfamily production; TNFSF cytokine production
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms.
immunoglobulin heavy chain V-D-J recombination (GO:0071707)
Namespace: biological_process
Definition: The process in which immunoglobulin heavy chain V, D, and J gene segments are recombined within a single locus utilizing the conserved heptamer and nonomer recombination signal sequences (RSS).
Synonyms: immunoglobulin V(D)J joining; immunoglobulin V(D)J recombination; immunoglobulin V-D-J joining
immunoglobulin light chain V-J recombination (GO:0071708)
Namespace: biological_process
Definition: The process in which immunoglobulin light chain V and J gene segments are recombined within a single locus utilizing the conserved heptamer and nonomer recombination signal sequences (RSS).
Synonyms: immunoglobulin V(D)J joining; immunoglobulin V(D)J recombination; immunoglobulin V-J joining
membrane assembly (GO:0071709)
Namespace: biological_process
Definition: The aggregation, arrangement and bonding together of a set of components to form a membrane.
basement membrane organization (GO:0071711)
Namespace: biological_process
Definition: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the basement membrane.
Synonyms: basement membrane organisation
Comment: Note that this term has no relationship to 'membrane organization ; GO:0061024' because the basement membrane is not a lipid bilayer.
obsolete ER-associated misfolded protein catabolic process (GO:0071712)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the breakdown of misfolded proteins transported from the endoplasmic reticulum and targeted to cytoplasmic proteasomes for degradation.
Synonyms: endoplasmic reticulum-associated misfolded protein catabolism
Comment: This term was added in error (identical in meaning to parent ERAD pathway)
icosanoid transmembrane transporter activity (GO:0071714)
Namespace: molecular_function
Definition: Enables the transfer of icosanoids from one side of a membrane to the other.
Synonyms: eicosanoid transmembrane transporter activity
icosanoid transport (GO:0071715)
Namespace: biological_process
Definition: The directed movement of icosanoids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Icosanoids are unsaturated C20 fatty acids and skeletally related compounds.
Synonyms: eicosanoid transport
leukotriene transport (GO:0071716)
Namespace: biological_process
Definition: The directed movement of leukotrienes into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Leukotrienes are linear C20 endogenous metabolites of arachidonic acid (icosa-5,8,11,14-tetraenoic acid) containing a terminal carboxy function and four or more double bonds (three or more of which are conjugated) as well as other functional groups.
thromboxane transport (GO:0071717)
Namespace: biological_process
Definition: The directed movement of thromboxanes into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A thromboxane is any of a class of oxygenated oxane derivatives, originally derived from prostaglandin precursors in platelets, that stimulate aggregation of platelets and constriction of blood vessels.
sodium-independent leukotriene transport (GO:0071719)
Namespace: biological_process
Definition: The directed, sodium-independent, movement of leukotrienes into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Leukotrienes are linear C20 endogenous metabolites of arachidonic acid (icosa-5,8,11,14-tetraenoic acid) containing a terminal carboxy function and four or more double bonds (three or more of which are conjugated) as well as other functional groups.
sodium-independent prostaglandin transport (GO:0071720)
Namespace: biological_process
Definition: The directed, sodium-independent, movement of prostaglandins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
detoxification of arsenic-containing substance (GO:0071722)
Namespace: biological_process
Definition: Any process that reduces or removes the toxicity of compounds containing arsenic, including arsenates, arsenites, and arsenides. These include transport of such compounds away from sensitive areas and to compartments or complexes whose purpose is sequestration of arsenic or arsenic-containing compounds.
Synonyms: detoxification of arsenic
lipopeptide binding (GO:0071723)
Namespace: molecular_function
Definition: Binding to a lipopeptide, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds and containing a nonprotein group consisting of a lipid or lipids.
Synonyms: bacterial lipopeptide binding; bacterial lipoprotein binding
Comment: Note that bacterial lipopeptides are derived from bacterial lipoproteins, but the two terms are sometimes used interchangeably in the literature.
response to diacyl bacterial lipopeptide (GO:0071724)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a diacylated bacterial lipopeptide stimulus.
Synonyms: response to diacylated bacterial lipoprotein
Comment: Note that bacterial lipopeptides are derived from bacterial lipoproteins, but the two terms are sometimes used interchangeably in the literature.
response to triacyl bacterial lipopeptide (GO:0071725)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a triacylated bacterial lipopeptide stimulus.
Synonyms: response to triacylated bacterial lipoprotein
Comment: Note that bacterial lipopeptides are derived from bacterial lipoproteins, but the two terms are sometimes used interchangeably in the literature.
cellular response to diacyl bacterial lipopeptide (GO:0071726)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a diacylated bacterial lipopeptide stimulus.
Synonyms: cellular response to diacylated bacterial lipoprotein
Comment: Note that bacterial lipopeptides are derived from bacterial lipoproteins, but the two terms are sometimes used interchangeably in the literature.
cellular response to triacyl bacterial lipopeptide (GO:0071727)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a triacylated bacterial lipopeptide stimulus.
Synonyms: cellular response to triacylated bacterial lipoprotein
Comment: Note that bacterial lipopeptides are derived from bacterial lipoproteins, but the two terms are sometimes used interchangeably in the literature.
beak development (GO:0071728)
Namespace: biological_process
Definition: The progression of the beak over time from its initial formation until its mature state. The avian beak is an external anatomical structure, in the head region, that is adapted for feeding self and young, catching prey, probing, etc. It encompasses, but is not restricted to, the maxilla, mandible, maxillary rhamphotheca, mandibular rhamphotheca, nostril, nasal fossa, nasal bones, egg tooth and rictus.
beak morphogenesis (GO:0071729)
Namespace: biological_process
Definition: The process in which the anatomical structures of the beak are generated and organized. The avian beak is an external anatomical structure, in the head region, that is adapted for feeding self and young, catching prey, probing, etc. It encompasses, but is not restricted to, the maxilla, mandible, maxillary rhamphotheca, mandibular rhamphotheca, nostril, nasal fossa, nasal bones, egg tooth and rictus.
beak formation (GO:0071730)
Namespace: biological_process
Definition: The process that gives rise to the beak. This process pertains to the initial formation of a structure from unspecified parts. The avian beak is an external anatomical structure, in the head region, that is adapted for feeding self and young, catching prey, probing, etc. It encompasses, but is not restricted to, the maxilla, mandible, maxillary rhamphotheca, mandibular rhamphotheca, nostril, nasal fossa, nasal bones, egg tooth and rictus.
response to nitric oxide (GO:0071731)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitric oxide stimulus.
cellular response to nitric oxide (GO:0071732)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitric oxide stimulus.
obsolete transcriptional activation by promoter-enhancer looping (GO:0071733)
Namespace: biological_process
Definition: OBSOLETE. The formation and maintenance of DNA loops that juxtapose the promoter and enhancer regions of RNA polymerase II-transcribed genes and activate transcription from an RNA polymerase II promoter.
Synonyms: long-range enhancer-promoter communication
Comment: This term was obsoleted because it was defined like a molecular function.
obsolete biotin-[pyruvate-carboxylase] ligase activity (GO:0071734)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: ATP + biotin + apo-(pyruvate-carboxylase) = AMP + diphosphate + biotin-(pyruvate-carboxylase).
Synonyms: biotin-[pyruvate carboxylase] ligase activity; biotin-[pyruvate carboxylase] synthetase activity; biotin-pyruvate carboxylase synthetase activity; biotin-pyruvate-carboxylase ligase activity; biotin:apo-pyruvate-carboxylase ligase
Comment: The reason for obsoletion is this term is more specific than the specificity of any known gene product.
IgG immunoglobulin complex (GO:0071735)
Namespace: cellular_component
Definition: A protein complex composed of two identical immunoglobulin heavy chains of an IgG isotype and two identical immunoglobulin light chains, held together by disulfide bonds. An IgG immunoglobulin complex may be embedded in the plasma membrane or present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph.
Synonyms: IgG1; IgG2; IgG2a; IgG2b; IgG2c; IgG3; IgG4
Comment: Note that an IgG immunoglobulin complex has the function of antigen binding if a suitable antigen is available. Also, IgG isotypes vary by species.
IgG immunoglobulin complex, circulating (GO:0071736)
Namespace: cellular_component
Definition: A protein complex composed of two identical immunoglobulin heavy chains of an IgG isotype and two identical immunoglobulin light chains, held together by disulfide bonds, and present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph.
Synonyms: IgG antibody; IgG1 antibody; IgG2 antibody; IgG2a antibody; IgG2b antibody; IgG2c antibody; IgG3 antibody; IgG4 antibody
Comment: Note that an IgG immunoglobulin complex has the function of antigen binding if a suitable antigen is available. Also, IgG isotypes vary by species.
IgG B cell receptor complex (GO:0071737)
Namespace: cellular_component
Definition: An IgG immunoglobulin complex that is present in the plasma membrane of B cells and is composed of two identical immunoglobulin heavy chains of an IgG isotype and two identical immunoglobulin light chains and a signaling subunit, a heterodimer of the Ig-alpha and Ig-beta proteins.
Synonyms: membrane-bound IgG; membrane-bound IgG1; membrane-bound IgG2; membrane-bound IgG2a; membrane-bound IgG2b; membrane-bound IgG2c; membrane-bound IgG3; membrane-bound IgG4; surface IgG; surface IgG1; surface IgG2; surface IgG2a; surface IgG2b; surface IgG2c; surface IgG3; surface IgG4
Comment: Note that an IgG immunoglobulin complex has the function of antigen binding if a suitable antigen is available. Also, IgG isotypes vary by species.