LiteFold/GO huggingface dataset:
lysophosphatidic acid acyltransferase activity (GO:0042171)
Namespace: molecular_function
Definition: Catalysis of the transfer of acyl groups from an acyl-CoA to lysophosphatidic acid to form phosphatidic acid.
Synonyms: LPAAT activity
regulation of sporulation resulting in formation of a cellular spore (GO:0042173)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of spore formation.
negative regulation of sporulation resulting in formation of a cellular spore (GO:0042174)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of sporulation.
Synonyms: down regulation of sporulation; down-regulation of sporulation; downregulation of sporulation; inhibition of sporulation
nuclear outer membrane-endoplasmic reticulum membrane network (GO:0042175)
Namespace: cellular_component
Definition: The continuous network of membranes encompassing the nuclear outer membrane and the endoplasmic reticulum membrane.
Synonyms: NE-ER continuum; NE-ER network; nuclear envelope-endoplasmic reticulum continuum; nuclear envelope-endoplasmic reticulum network; nuclear envelope-ER network; nuclear membrane-endoplasmic reticulum continuum; nuclear membrane-ER network
regulation of protein catabolic process (GO:0042176)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.
Synonyms: regulation of cellular protein breakdown; regulation of cellular protein catabolic process; regulation of cellular protein catabolism; regulation of cellular protein degradation; regulation of cyclin breakdown; regulation of cyclin catabolic process; regulation of cyclin catabolism; regulation of cyclin degradation; regulation of degradation of cyclin; regulation of protein breakdown; regulation of protein catabolism; regulation of protein degradation
negative regulation of protein catabolic process (GO:0042177)
Namespace: biological_process
Definition: Any process that stops, prevents or reduces the frequency, rate or extent of protein catabolic process.
Synonyms: down regulation of cellular protein breakdown; down regulation of cellular protein catabolic process; down regulation of cellular protein catabolism; down regulation of cellular protein degradation; down regulation of protein catabolic process; down-regulation of cellular protein breakdown; down-regulation of cellular protein catabolic process; down-regulation of cellular protein catabolism; down-regulation of cellular protein degradation; down-regulation of protein catabolic process; downregulation of cellular protein breakdown; downregulation of cellular protein catabolic process; downregulation of cellular protein catabolism; downregulation of cellular protein degradation; downregulation of protein catabolic process; inhibition of cellular protein breakdown; inhibition of cellular protein catabolic process; inhibition of cellular protein catabolism; inhibition of cellular protein degradation; inhibition of protein catabolic process; negative regulation of cellular protein breakdown; negative regulation of cellular protein catabolic process; negative regulation of cellular protein catabolism; negative regulation of cellular protein degradation; negative regulation of protein breakdown; negative regulation of protein catabolism; negative regulation of protein degradation
ketone metabolic process (GO:0042180)
Namespace: biological_process
Definition: The chemical reactions and pathways involving any of a class of organic compounds that contain the carbonyl group, CO, and in which the carbonyl group is bonded only to carbon atoms, as carried out by individual cells. The general formula for a ketone is RCOR, where R and R are alkyl or aryl groups.
Synonyms: ketone metabolism
ketone biosynthetic process (GO:0042181)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of ketones, a class of organic compounds that contain the carbonyl group, CO, and in which the carbonyl group is bonded only to carbon atoms. The general formula for a ketone is RCOR, where R and R are alkyl or aryl groups.
Synonyms: ketone anabolism; ketone biosynthesis; ketone formation; ketone synthesis
ketone catabolic process (GO:0042182)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of ketones, a class of organic compounds that contain the carbonyl group, CO, and in which the carbonyl group is bonded only to carbon atoms. The general formula for a ketone is RCOR, where R and R are alkyl or aryl groups.
Synonyms: ketone breakdown; ketone catabolism; ketone degradation
xylene catabolic process (GO:0042184)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of xylene, a mixture of three colorless, aromatic hydrocarbon liquids, ortho-, meta- and para-xylene.
Synonyms: xylene breakdown; xylene catabolism; xylene degradation
m-xylene catabolic process (GO:0042185)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of m-xylene, 1,3-dimethylbenzene, a colorless, liquid aromatic hydrocarbon.
Synonyms: m-xylene breakdown; m-xylene catabolism; m-xylene degradation; meta-xylene catabolic process; meta-xylene catabolism
o-xylene catabolic process (GO:0042186)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of o-xylene, (1,2-dimethylbenzene) a colorless, liquid aromatic hydrocarbon.
Synonyms: o-xylene breakdown; o-xylene catabolism; o-xylene degradation; ortho-xylene catabolic process; ortho-xylene catabolism
p-xylene catabolic process (GO:0042187)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of p-xylene (1,4-dimethylbenzene), a colorless, liquid aromatic hydrocarbon.
Synonyms: p-xylene breakdown; p-xylene catabolism; p-xylene degradation; para-xylene catabolic process; para-xylene catabolism
vanillin biosynthetic process (GO:0042189)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of vanillin, an aromatic hydrocarbon which occurs naturally in black vanilla bean pods.
Synonyms: vanillic aldehyde biosynthesis; vanillic aldehyde biosynthetic process; vanillin anabolism; vanillin biosynthesis; vanillin formation; vanillin synthesis
vanillin catabolic process (GO:0042190)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of vanillin, an aromatic hydrocarbon which occurs naturally in black vanilla bean pods.
Synonyms: vanillic aldehyde catabolic process; vanillic aldehyde catabolism; vanillin breakdown; vanillin catabolism; vanillin degradation
obsolete methylmercury metabolic process (GO:0042191)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving methylmercury (MeHg+), a highly toxic organometal which can accumulate in tissues, particularly in fish species.
Synonyms: methylmercury metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
methylmercury biosynthetic process (GO:0042192)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of methylmercury (MeHg+), a highly toxic organometal.
Synonyms: methylmercury anabolism; methylmercury biosynthesis; methylmercury formation; methylmercury synthesis
Comment: Note that there is no unequivocal evidence supporting a specific physiological role for the reaction leading to the synthesis of methylmercury. It may be a defense molecule, or serve to detoxify mercury. Once the physiological role is understood, this term will likely be obsoleted.
methylmercury catabolic process (GO:0042193)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of methylmercury (MeHg+), a highly toxic organometal.
Synonyms: methylmercury breakdown; methylmercury catabolism; methylmercury degradation
quinate biosynthetic process (GO:0042194)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of quinate, the anion of quinic acid.
Synonyms: quinate anabolism; quinate biosynthesis; quinate formation; quinate synthesis; quinic acid biosynthesis; quinic acid biosynthetic process
aerobic gallate catabolic process (GO:0042195)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of gallate, the anion of gallic acid, in the presence of oxygen.
Synonyms: aerobic gallate breakdown; aerobic gallate catabolism; aerobic gallate degradation; aerobic gallic acid catabolic process; aerobic gallic acid catabolism
obsolete chlorinated hydrocarbon metabolic process (GO:0042196)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving chlorinated hydrocarbons, compounds derived from hydrocarbons by replacing one or more hydrogen atoms with chlorine atoms.
Synonyms: chlorinated hydrocarbon metabolism
Comment: This term was obsoleted because it is an unnecessary grouping term.
halogenated hydrocarbon metabolic process (GO:0042197)
Namespace: biological_process
Definition: The chemical reactions and pathways involving halogenated hydrocarbons, compounds derived from hydrocarbons by replacing one or more hydrogen atoms with halogen atoms. Halogens include fluorine, chlorine, bromine and iodine.
Synonyms: halogenated hydrocarbon metabolism
obsolete nylon metabolic process (GO:0042198)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving nylon, a polymer where the main polymer chain comprises recurring amide groups; these compounds are generally formed from combinations of diamines, diacids and amino acids.
Synonyms: nylon metabolism
Comment: This term was obsoleted because it is an unnecessary grouping term.
obsolete cyanuric acid metabolic process (GO:0042199)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving cyanuric acid, a suspected gastrointestinal or liver toxicant, and a potential degradation product of triazine herbicides, such as atrazine and simazine. It is widely used for the stabilization of available chlorine in swimming pool water and is also the starting compound for the synthesis of many organic derivatives.
Synonyms: cyanuric acid metabolism
Comment: This term was obsoleted because it is an unnecessary grouping term.
cyanuric acid catabolic process (GO:0042200)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of cyanuric acid, a potential degradation product of triazine herbicides.
Synonyms: cyanuric acid breakdown; cyanuric acid catabolism; cyanuric acid degradation
obsolete N-cyclopropylmelamine metabolic process (GO:0042201)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving N-cyclopropylmelamine, a triazine compound commonly used as an insect growth regulator insecticide.
Synonyms: cyromazine metabolic process; cyromazine metabolism; N-cyclopropylmelamine metabolism
Comment: This term was obsoleted because it is an unnecessary grouping term.
toluene catabolic process (GO:0042203)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of toluene, a volatile monoaromatic hydrocarbon found in crude petroleum and petroleum products.
Synonyms: toluene breakdown; toluene catabolism; toluene degradation
s-triazine compound catabolic process (GO:0042204)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of any s-triazine compound. These compounds include many pesticides of widespread use in agriculture, and are characterized by a symmetrical hexameric ring consisting of alternating carbon and nitrogen atoms.
Synonyms: s-triazine compound breakdown; s-triazine compound catabolism; s-triazine compound degradation
chlorinated hydrocarbon catabolic process (GO:0042205)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of chlorinated hydrocarbons, compounds derived from hydrocarbons by replacing one or more hydrogen atoms with chlorine atoms.
Synonyms: chlorinated hydrocarbon breakdown; chlorinated hydrocarbon catabolism; chlorinated hydrocarbon degradation
halogenated hydrocarbon catabolic process (GO:0042206)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of halogenated hydrocarbons, compounds derived from hydrocarbons by replacing one or more hydrogen atoms with halogen atoms.
Synonyms: halogenated hydrocarbon breakdown; halogenated hydrocarbon catabolism; halogenated hydrocarbon degradation
styrene catabolic process (GO:0042207)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of styrene, an aromatic hydrocarbon liquid used in the manufacture of polystyrene.
Synonyms: styrene breakdown; styrene catabolism; styrene degradation
propylene catabolic process (GO:0042208)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of propylene, an alkene produced by catalytic or thermal cracking of hydrocarbons or as a by-product of petroleum refining.
Synonyms: propylene breakdown; propylene catabolism; propylene degradation
orcinol catabolic process (GO:0042209)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of orcinol (5-methyl-1,3-benzenediol), an aromatic compound derived from the fermentation of lichen and synthesized by some higher plants.
Synonyms: orcin catabolic process; orcin catabolism; orcinol breakdown; orcinol catabolism; orcinol degradation
obsolete dimethylsilanediol catabolic process (GO:0042211)
Namespace: biological_process
Definition: OBSOLETE. The aerobic chemical reactions and pathways resulting in the breakdown of dimethylsilanediol, the smallest member of the dialkylsilanediols. Dimethylsilanediol is the monomer of polydimethylsiloxane, a compound which can be found in a wide range of industrial and consumer products.
Synonyms: catabolic process of DMSD; catabolism of DMSD; degradation of dimethylsilanediol; dimethylsilanediol breakdown; dimethylsilanediol catabolism; dimethylsilanediol degradation
Comment: This term was obsoleted because it is an unnecessary grouping term.
obsolete cresol metabolic process (GO:0042212)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving cresol, a mixture of the aromatic alcohol isoforms o-, p-, and m-cresol, which is obtained from coal tar or petroleum. The isomers are used as disinfectants, textile scouring agents, surfactants and as intermediates in the manufacture of salicylaldehyde, coumarin, and herbicides as well as being a major component of creosote.
Synonyms: cresol metabolism; hydroxytoluene metabolic process; hydroxytoluene metabolism
Comment: This term was obsoleted because it is an unnecessary grouping term.
anaerobic phenol-containing compound metabolic process (GO:0042215)
Namespace: biological_process
Definition: The chemical reactions and pathways involving a phenol, any compound containing one or more hydroxyl groups directly attached to an aromatic carbon ring, in the absence of oxygen.
Synonyms: anaerobic phenol-containing compound metabolism
phenanthrene catabolic process (GO:0042216)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of phenanthrene, a tricyclic aromatic hydrocarbon.
Synonyms: phenanthrene breakdown; phenanthrene catabolism; phenanthrene degradation
1-aminocyclopropane-1-carboxylate catabolic process (GO:0042217)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of 1-aminocyclopropane-1-carboxylate, a natural product found in plant tissues. It is a key intermediate in the biosynthesis of ethylene (ethene), a fruit-ripening hormone in plants.
Synonyms: 1-aminocyclopropane-1-carboxylate breakdown; 1-aminocyclopropane-1-carboxylate catabolism; 1-aminocyclopropane-1-carboxylate degradation
obsolete 1-aminocyclopropane-1-carboxylate biosynthetic process (GO:0042218)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of 1-aminocyclopropane-1-carboxylate, a natural product found in plant tissues. It is a key intermediate in the biosynthesis of ethylene (ethene), a fruit-ripening hormone in plants.
Synonyms: 1-aminocyclopropane-1-carboxylate anabolism; 1-aminocyclopropane-1-carboxylate biosynthesis; 1-aminocyclopropane-1-carboxylate formation; 1-aminocyclopropane-1-carboxylate synthesis
Comment: This term was obsoleted because it represents an intermediate in ethylene biosynthesis.
modified amino acid catabolic process (GO:0042219)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of compounds derived from amino acids, organic acids containing one or more amino substituents.
Synonyms: amino acid derivative catabolic process; cellular amino acid derivative breakdown; cellular amino acid derivative catabolic process; cellular amino acid derivative catabolism; cellular amino acid derivative degradation; cellular modified amino acid breakdown; cellular modified amino acid catabolic process; cellular modified amino acid catabolism; cellular modified amino acid degradation; modified amino acid catabolism
response to cocaine (GO:0042220)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cocaine stimulus. Cocaine is a crystalline alkaloid obtained from the leaves of the coca plant.
response to chemical (GO:0042221)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus.
Synonyms: response to chemical stimulus; response to chemical substance
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
cobyrinic acid a,c-diamide synthase activity (GO:0042242)
Namespace: molecular_function
Definition: Catalysis of the conversion of cobyrinic acid to cobyrinic acid a,c-diamide via the intermediate formation of cobyrinic acid c-monoamide.
Synonyms: CobB; cobyrinate a c diamide synthase activity; cobyrinate a c-diamide synthase activity; cobyrinate a,c diamide synthase activity; cobyrinate a,c-diamide synthase activity
asexual spore wall assembly (GO:0042243)
Namespace: biological_process
Definition: The aggregation, arrangement and bonding together of a set of components to form an asexual spore wall, the specialized envelope lying outside the cell membrane of a spore derived from an asexual process. Examples of this process are found in Bacterial and Fungal species.
Synonyms: asexual spore wall formation
spore wall assembly (GO:0042244)
Namespace: biological_process
Definition: The aggregation, arrangement and bonding together of a set of components to form a spore wall; a spore wall is the specialized envelope lying outside the cell membrane of a spore.
Synonyms: spore coat biosynthesis; spore coat biosynthetic process; spore wall formation
RNA repair (GO:0042245)
Namespace: biological_process
Definition: Any process that results in the repair of damaged RNA.
tissue regeneration (GO:0042246)
Namespace: biological_process
Definition: The regrowth of lost or destroyed tissues.
establishment of planar polarity of follicular epithelium (GO:0042247)
Namespace: biological_process
Definition: Coordinated organization of groups of cells in the plane of a follicular epithelium, such that they all orient to similar coordinates.
maintenance of polarity of follicular epithelium (GO:0042248)
Namespace: biological_process
Definition: The maintenance of an established polarized follicular epithelial sheet.
establishment of planar polarity of embryonic epithelium (GO:0042249)
Namespace: biological_process
Definition: Coordinated organization of groups of cells in the plane of an embryonic epithelium, such that they all orient to similar coordinates.
maintenance of polarity of embryonic epithelium (GO:0042250)
Namespace: biological_process
Definition: The maintenance of an established polarized embryonic epithelial sheet.
maintenance of polarity of larval imaginal disc epithelium (GO:0042251)
Namespace: biological_process
Definition: The maintenance of an established polarized larval imaginal disc epithelium.
establishment of planar polarity of larval imaginal disc epithelium (GO:0042252)
Namespace: biological_process
Definition: Coordinated organization of groups of cells in the plane of a larval imaginal disc epithelium, such that they all orient to similar coordinates.
ribosome biogenesis (GO:0042254)
Namespace: biological_process
Definition: A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.
Synonyms: ribosome biogenesis and assembly
ribosome assembly (GO:0042255)
Namespace: biological_process
Definition: The aggregation, arrangement and bonding together of the mature ribosome and of its subunits.
Synonyms: ribosomal subunit assembly
cytosolic ribosome assembly (GO:0042256)
Namespace: biological_process
Definition: The aggregation, arrangement and bonding together of the large and small ribosomal subunits into a functional cytosolic ribosome. Distinct stages of this process take place first in the nucleolus, then in the nucleus and finally in the cytosol.
Synonyms: mature ribosome assembly
obsolete molybdenum incorporation via L-serinyl molybdopterin guanine dinucleotide (GO:0042258)
Namespace: biological_process
Definition: OBSOLETE. The incorporation of molybdenum into a protein via L-serinyl molybdopterin guanine dinucleotide.
Comment: This term was obsoleted because it represents a molecular function.
obsolete peptidyl-L-beta-methylthioasparagine biosynthetic process from peptidyl-asparagine (GO:0042259)
Namespace: biological_process
Definition: OBSOLETE. The modification of peptidyl-asparagine to form peptidyl-L-beta-methylthioasparagine, typical of bacterial ribosomal protein S12.
Synonyms: peptidyl-L-beta-methylthioasparagine anabolism from peptidyl-asparagine; peptidyl-L-beta-methylthioasparagine formation from peptidyl-asparagine; peptidyl-L-beta-methylthioasparagine synthesis from peptidyl-asparagine
Comment: This term was obsoleted because it represents a molecular function.
DNA protection (GO:0042262)
Namespace: biological_process
Definition: Any process in which DNA is protected from damage by, for example, oxidative stress.
peptidyl-aspartic acid hydroxylation (GO:0042264)
Namespace: biological_process
Definition: The hydroxylation of peptidyl-aspartic acid to form peptidyl-hydroxyaspartic acid.
Synonyms: peptidyl-aspartic acid/asparagine hydroxylation
obsolete peptidyl-asparagine hydroxylation (GO:0042265)
Namespace: biological_process
Definition: OBSOLETE. The hydroxylation of peptidyl-asparagine to form peptidyl-hydroxyasparagine.
Synonyms: peptidyl-aspartic acid/asparagine hydroxylation
Comment: This term was obsoleted because it represents a molecular function.