LiteFold/GO huggingface dataset:
obsolete positive regulation of nitric-oxide synthase biosynthetic process (GO:0051770)
Namespace: biological_process
Definition: OBSOLETE. Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of a nitric oxide synthase enzyme.
Synonyms: activation of nitric-oxide synthase 2 biosynthetic process; activation of nitric-oxide synthase biosynthetic process; positive regulation of nitric-oxide synthase (type 2) biosynthesis; positive regulation of nitric-oxide synthase (type 2) biosynthetic process; positive regulation of nitric-oxide synthase (type II) biosynthesis; positive regulation of nitric-oxide synthase (type II) biosynthetic process; positive regulation of nitric-oxide synthase 2 biosynthetic process; positive regulation of NO synthase biosynthesis; positive regulation of NO synthase biosynthetic process; positive regulation of NOS biosynthesis; positive regulation of NOS biosynthetic process; positive regulation of NOS2 synthase biosynthesis; positive regulation of NOS2 synthase biosynthetic process; stimulation of nitric-oxide synthase 2 biosynthetic process; stimulation of nitric-oxide synthase biosynthetic process; up regulation of nitric-oxide synthase 2 biosynthetic process; up regulation of nitric-oxide synthase biosynthetic process; up-regulation of nitric-oxide synthase 2 biosynthetic process; up-regulation of nitric-oxide synthase biosynthetic process; upregulation of nitric-oxide synthase 2 biosynthetic process; upregulation of nitric-oxide synthase biosynthetic process
Comment: The reason for obsoletion is that this term refers to a gene product.
obsolete negative regulation of nitric-oxide synthase biosynthetic process (GO:0051771)
Namespace: biological_process
Definition: OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of a nitric-oxide synthase enzyme.
Synonyms: down regulation of nitric-oxide synthase 2 biosynthetic process; down regulation of nitric-oxide synthase biosynthetic process; down-regulation of nitric-oxide synthase 2 biosynthetic process; down-regulation of nitric-oxide synthase biosynthetic process; downregulation of nitric-oxide synthase 2 biosynthetic process; downregulation of nitric-oxide synthase biosynthetic process; inhibition of nitric-oxide synthase 2 biosynthetic process; inhibition of nitric-oxide synthase biosynthetic process; negative regulation of nitric-oxide synthase (type 2) biosynthesis; negative regulation of nitric-oxide synthase (type 2) biosynthetic process; negative regulation of nitric-oxide synthase (type II) biosynthesis; negative regulation of nitric-oxide synthase (type II) biosynthetic process; negative regulation of nitric-oxide synthase 2 biosynthetic process; negative regulation of NO synthase biosynthesis; negative regulation of NO synthase biosynthetic process; negative regulation of NOS biosynthesis; negative regulation of NOS biosynthetic process; negative regulation of NOS2 synthase biosynthesis; negative regulation of NOS2 synthase biosynthetic process
Comment: The reason for obsoletion is that this term refers to a gene product.
response to redox state (GO:0051775)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating redox state. Redox state refers to the balance of oxidized versus reduced forms of electron donors and acceptors in an organelle, cell or organ; plastoquinone, glutathione (GSH/GSSG), and nicotinamide nucleotides (NAD+/NADH and NADP+/NADPH) are among the most important.
Synonyms: redox signal response
detection of redox state (GO:0051776)
Namespace: biological_process
Definition: The series of events in which a chemical stimulus indicating redox state is received and converted into a molecular signal. Redox state refers to the balance of oxidized versus reduced forms of electron donors and acceptors in an organelle, cell or organ; plastoquinone, glutathione (GSH/GSSG), and nicotinamide nucleotides (NAD+/NADH and NADP+/NADPH) are among the most important.
Synonyms: redox sensing
obsolete ent-7-alpha-hydroxykaurenoate oxidase activity (GO:0051778)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: ent-7-alpha-hydroxykaurenoate + NADPH + H+ + O2 = gibberellin 12-aldehyde + NADP+ + 2 H2O. This is the second of three successive reactions resulting in the oxidation of ent-kaurenoate (ent-kaurenoic acid) to gibberellin 12 (GA12).
Comment: The reason for obsoletion is that the term is part of a 3-step reaction defined by EC:1.14.14.107.
behavioral response to nutrient (GO:0051780)
Namespace: biological_process
Definition: Any process that results in a change in the behavior of an organism as a result of a nutrient stimulus.
Synonyms: behavioural response to nutrient
positive regulation of cell division (GO:0051781)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of cell division.
Synonyms: activation of cell division; stimulation of cell division; up regulation of cell division; up-regulation of cell division; upregulation of cell division
negative regulation of cell division (GO:0051782)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of cell division.
Synonyms: down regulation of cell division; down-regulation of cell division; downregulation of cell division; inhibition of cell division
regulation of nuclear division (GO:0051783)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of nuclear division, the partitioning of the nucleus and its genetic information.
negative regulation of nuclear division (GO:0051784)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of nuclear division, the partitioning of the nucleus and its genetic information.
Synonyms: down regulation of nuclear division; down-regulation of nuclear division; downregulation of nuclear division; inhibition of nuclear division
all-trans-retinol 13,14-reductase activity (GO:0051786)
Namespace: molecular_function
Definition: Catalysis of the reaction: all-trans-13,14-dihydroretinol + A = all-trans-retinol + AH(2). Note that this reaction has only been observed to occur in the opposite direction.
Synonyms: (13,14)-all-trans-retinol saturase activity; all-trans-13,14-dihydroretinol:acceptor 13,14-oxidoreductase activity; all-trans-retinol:all-trans-13,14-dihydroretinol saturase activity; retinol saturase activity; RetSat activity
misfolded protein binding (GO:0051787)
Namespace: molecular_function
Definition: Binding to a misfolded protein.
response to misfolded protein (GO:0051788)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a misfolded protein stimulus.
obsolete response to protein (GO:0051789)
Namespace: biological_process
Definition: OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a protein stimulus.
Synonyms: response to protein; response to protein stimulus
Comment: This term was made obsolete because more specific terms exist.
short-chain fatty acid biosynthetic process (GO:0051790)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of a short-chain fatty acid. A short-chain fatty acid has an aliphatic tail containing fewer than 6 carbons.
Synonyms: short chain fatty acid biosynthesis; short chain fatty acid biosynthetic process; short-chain fatty acid anabolism; short-chain fatty acid biosynthesis; short-chain fatty acid formation; short-chain fatty acid synthesis
Comment: While there is not universal consensus on the lengths of short-, medium-, long- and very-long-chain fatty acids, the GO uses the definitions in ChEBI (see CHEBI:26666, CHEBI:59554, CHEBI:15904 and CHEBI:27283).
medium-chain fatty acid metabolic process (GO:0051791)
Namespace: biological_process
Definition: The chemical reactions and pathways involving a medium-chain fatty acid. A medium-chain fatty acid has an aliphatic tail containing 6 to 12 carbons.
Synonyms: medium chain fatty acid metabolic process; medium chain fatty acid metabolism; medium-chain fatty acid metabolism
Comment: While there is not universal consensus on the lengths of short-, medium-, long- and very-long-chain fatty acids, the GO uses the definitions in ChEBI (see CHEBI:26666, CHEBI:59554, CHEBI:15904 and CHEBI:27283).
medium-chain fatty acid biosynthetic process (GO:0051792)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of a medium-chain fatty acid. A medium-chain fatty acid has an aliphatic tail containing 6 to 12 carbons.
Synonyms: medium chain fatty acid biosynthesis; medium chain fatty acid biosynthetic process; medium-chain fatty acid anabolism; medium-chain fatty acid biosynthesis; medium-chain fatty acid formation; medium-chain fatty acid synthesis
Comment: While there is not universal consensus on the lengths of short-, medium-, long- and very-long-chain fatty acids, the GO uses the definitions in ChEBI (see CHEBI:26666, CHEBI:59554, CHEBI:15904 and CHEBI:27283).
medium-chain fatty acid catabolic process (GO:0051793)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of a medium-chain fatty acid. A medium-chain fatty acid has an aliphatic tail containing 6 to 12 carbons.
Synonyms: medium chain fatty acid catabolic process; medium chain fatty acid catabolism; medium-chain fatty acid breakdown; medium-chain fatty acid catabolism; medium-chain fatty acid degradation
Comment: While there is not universal consensus on the lengths of short-, medium-, long- and very-long-chain fatty acids, the GO uses the definitions in ChEBI (see CHEBI:26666, CHEBI:59554, CHEBI:15904 and CHEBI:27283).
negative regulation of timing of catagen (GO:0051796)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of timing of catagen, the regression phase of the hair cycle.
Synonyms: down regulation of catagen; down-regulation of catagen; downregulation of catagen; inhibition of catagen; negative regulation of catagen
regulation of hair follicle development (GO:0051797)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of hair follicle development.
positive regulation of hair follicle development (GO:0051798)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of hair follicle development.
Synonyms: activation of hair follicle development; stimulation of hair follicle development; up regulation of hair follicle development; up-regulation of hair follicle development; upregulation of hair follicle development
negative regulation of hair follicle development (GO:0051799)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of hair follicle development.
Synonyms: down regulation of hair follicle development; down-regulation of hair follicle development; downregulation of hair follicle development; inhibition of hair follicle development
phosphatidylinositol-3,4-bisphosphate 3-phosphatase activity (GO:0051800)
Namespace: molecular_function
Definition: Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 3,4-bisphosphate + H2O = 1-phosphatidyl-1D-myo-inositol 4-phosphate + phosphate.
Synonyms: PTEN activity
obsolete cytolysis in other organism involved in symbiotic interaction (GO:0051801)
Namespace: biological_process
Definition: OBSOLETE. The killing by an organism of a cell in a second organism by means of the rupture of cell membranes and the loss of cytoplasm, where the two organisms are in a symbiotic interaction.
Synonyms: cytolysis of cells in other organism during symbiotic interaction; cytolysis of cells in other organism involved in symbiotic interaction
Comment: This term was obsoleted because it represents an unnecessary grouping class.
obsolete regulation of cytolysis in other organism involved in symbiotic interaction (GO:0051802)
Namespace: biological_process
Definition: OBSOLETE. Any process in which an organism modulates the frequency, rate or extent of the cytolysis by that organism of cells in a second organism, where the two organisms are in a symbiotic interaction.
Synonyms: regulation of cytolysis of cells in other organism during symbiotic interaction; regulation of cytolysis of cells in other organism involved in symbiotic interaction
Comment: This term was obsoleted because it represents an unnecessary grouping class.
obsolete positive regulation of cytolysis in other organism involved in symbiotic interaction (GO:0051804)
Namespace: biological_process
Definition: OBSOLETE. Any process in which an organism activates or increases the frequency, rate or extent of cytolysis by that organism of cells in a second organism, where the two organisms are in a symbiotic interaction.
Synonyms: activation of cytolysis of cells in other organism during symbiotic interaction; positive regulation of cytolysis of cells in other organism during symbiotic interaction; positive regulation of cytolysis of cells in other organism involved in symbiotic interaction; stimulation of cytolysis of cells in other organism during symbiotic interaction; up regulation of cytolysis of cells in other organism during symbiotic interaction; up-regulation of cytolysis of cells in other organism during symbiotic interaction; upregulation of cytolysis of cells in other organism during symbiotic interaction
Comment: This term was obsoleted because it represents an unnecessary grouping class.
obsolete movement in other organism involved in symbiotic interaction (GO:0051814)
Namespace: biological_process
Definition: OBSOLETE. The process in which an organism or its progeny spreads from one location to another within a second organism, where the two organisms are in a symbiotic interaction.
Synonyms: movement in other organism during symbiotic interaction; movement within other organism during symbiotic interaction
Comment: This term was obsoleted because it represented both a process and a location.
obsolete migration in other organism involved in symbiotic interaction (GO:0051815)
Namespace: biological_process
Definition: OBSOLETE. The directional movement of an organism from one place to another within a second organism, where the two organisms are in a symbiotic interaction.
Synonyms: migration in other organism during symbiotic interaction; migration within other organism during symbiotic interaction
Comment: This term was obsoleted because it represented both a process and a location.
obsolete acquisition of nutrients from other organism during symbiotic interaction (GO:0051816)
Namespace: biological_process
Definition: OBSOLETE. The production of structures and/or molecules in an organism that are required for the acquisition and/or utilization of nutrients obtained from a second organism, where the two organisms are in a symbiotic interaction.
Comment: This term was obsoleted because it represented an unnecessary grouping class.
obsolete modulation of process of other organism involved in symbiotic interaction (GO:0051817)
Namespace: biological_process
Definition: OBSOLETE. The process in which an organism effects a change in the structure or processes of a second organism, where the two organisms are in a symbiotic interaction.
Synonyms: modification of morphology or physiology of other organism during symbiotic interaction; modification of morphology or physiology of other organism involved in symbiotic interaction; modulation of biological process of other organism involved in symbiotic interaction; modulation of morphology or physiology of other organism during symbiotic interaction; regulation of morphology of other organism during symbiotic interaction; regulation of morphology or physiology of other organism during symbiotic interaction; regulation of physiological process in other organism during symbiotic interaction; regulation of physiology of other organism during symbiotic interaction
Comment: This term was obsoleted because it represents an unnecessary grouping class.
obsolete disruption of cells of other organism involved in symbiotic interaction (GO:0051818)
Namespace: biological_process
Definition: OBSOLETE. A process in which an organism has a negative effect on the functioning of the second organism's cells, where the two organisms are in a symbiotic interaction.
Synonyms: disruption of cells of other organism during symbiotic interaction
Comment: This term was obsoleted because it represents an unnecessary grouping class.
symbiont-mediated induction of tumor or growth in host (GO:0051819)
Namespace: biological_process
Definition: The process in which a symbiont causes the formation of a mass of cells in a host organism. While these growths are often called nodules, they are not formed as nitrogen-fixing structures, but rather to provide an environment for the symbiont to grow. In this sense they are parasitic structures rather than mutualistic.
Synonyms: induction by symbiont in host of tumor, nodule, or growth; induction by symbiont in host of tumor, nodule, or growth containing transformed cells; induction by symbiont of nodulation, tumor or growth in host; induction by symbiont of tumor or growth in host; induction of tumor, nodule, or growth containing transformed cells in other organism during symbiotic interaction; induction of tumor, nodule, or growth containing transformed cells in other organism involved in symbiotic interaction; induction of tumor, nodule, or growth in other organism during symbiotic interaction; induction of tumor, nodule, or growth in other organism involved in symbiotic interaction
obsolete dissemination or transmission of organism from other organism involved in symbiotic interaction (GO:0051821)
Namespace: biological_process
Definition: OBSOLETE. The movement of an organism from a second organism to another place in the environment, where the two organisms are in a symbiotic interaction. The first organism may also move to a different organism.
Synonyms: dissemination or transmission of organism from other organism during symbiotic interaction
Comment: This term was obsoleted because it did not represent a specific process, but represented the life cycle of a symbiont.
obsolete dissemination or transmission of organism from other organism by vector involved in symbiotic interaction (GO:0051822)
Namespace: biological_process
Definition: OBSOLETE. The movement of an organism from a second organism to another place in the environment by means of a vector, where the two organisms are in a symbiotic interaction. The first organism may also move to a different organism, and the vector organism is often an insect or an animal.
Synonyms: dissemination or transmission of organism from other organism by vector during symbiotic interaction
Comment: This term was obsoleted because it did not represent a specific process, but represented the life cycle of a symbiont.
regulation of synapse structural plasticity (GO:0051823)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of synapse structural plasticity. Synapse structural plasticity is a type of cytoskeletal remodeling; this remodeling is induced by stimuli that can lead to long term potentiation and it can be activity-dependent or -independent. Examples of cytoskeletal changes include the formation of new spines and increase in spine size; this can be accompanied by the insertion of greater numbers of glutamate (or other neurotransmitter) receptors into the post-synaptic membrane.
Synonyms: regulation of synaptic structural plasticity
negative regulation of synapse structural plasticity (GO:0051826)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of synapse structural plasticity.
Synonyms: down regulation of synapse structural plasticity; down-regulation of synapse structural plasticity; downregulation of synapse structural plasticity; inhibition of synapse structural plasticity
obsolete growth or development on or near surface of other organism during symbiotic interaction (GO:0051827)
Namespace: biological_process
Definition: OBSOLETE. The increase in size or mass of an organism, or the progression of an organism from an initial condition to a later condition, occurring on or near the exterior of a second organism, where the two organisms are in a symbiotic interaction.
Synonyms: growth or development on or near surface of other organism during symbiotic interaction
Comment: This term was made obsolete because it contained a conjunction (or).
obsolete growth or development in other organism during symbiotic interaction (GO:0051831)
Namespace: biological_process
Definition: OBSOLETE. The increase in size or mass of an organism, or the progression of an organism from an initial condition to a later condition, occurring within the cells or tissues of a second organism, where the two organisms are in a symbiotic interaction. This may (but not necessarily) include a filamentous growth form, and also can include secretion of proteases and lipases to break down the tissue of the second organism.
Synonyms: growth or development in other organism during symbiotic interaction; growth or development within other organism during symbiotic interaction; invasive growth
Comment: This term was made obsolete because it contained a conjunction (or).
positive regulation of synapse structural plasticity (GO:0051835)
Namespace: biological_process
Definition: Any process that activates, maintains or increases the frequency, rate or extent of synaptic structural plasticity.
Synonyms: activation of synapse structural plasticity; stimulation of synapse structural plasticity; up regulation of synapse structural plasticity; up-regulation of synapse structural plasticity; upregulation of synapse structural plasticity
obsolete cytolysis by host of symbiont cells (GO:0051838)
Namespace: biological_process
Definition: OBSOLETE. The killing by an organism of a cell in its symbiont organism by means of the rupture of cell membranes and the loss of cytoplasm. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.
Comment: This term was obsoleted because it is redundant with other more specific processes, such as\ninnate immune response ; GO:0045087, and natural killer cell mediated cytotoxicity ; GO:0042267.
obsolete regulation by host of cytolysis of symbiont cells (GO:0051839)
Namespace: biological_process
Definition: OBSOLETE. Any process in which an organism modulates the frequency, rate or extent of the cytolysis by that organism of cells in its symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.
Comment: This term was obsoleted because it has been used inconsistently.
obsolete negative regulation by host of cytolysis of symbiont cells (GO:0051840)
Namespace: biological_process
Definition: OBSOLETE. Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of cytolysis by that organism of cells in its symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.
Synonyms: down regulation by host of cytolysis of symbiont cells; down-regulation by host of cytolysis of symbiont cells; downregulation by host of cytolysis of symbiont cells; inhibition by host of cytolysis of symbiont cells
Comment: This term was obsoleted because it has been used inconsistently.