LiteFold/GO huggingface dataset:
obsolete intrinsic component of presynaptic membrane (GO:0098889)
Namespace: cellular_component
Definition: OBSOLETE. The component of the presynaptic membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.
Synonyms: intrinsic to presynaptic membrane
Comment: This term was obsoleted because it represents protein topology, not a cellular component.
extrinsic component of postsynaptic membrane (GO:0098890)
Namespace: cellular_component
Definition: The component of the postsynaptic membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.
extrinsic component of presynaptic active zone membrane (GO:0098891)
Namespace: cellular_component
Definition: The component of the presynaptic active zone membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.
extrinsic component of postsynaptic specialization membrane (GO:0098892)
Namespace: cellular_component
Definition: The component of the postsynaptic specialization membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.
extrinsic component of postsynaptic endocytic zone (GO:0098893)
Namespace: cellular_component
Definition: The component of the postsynaptic endocytic zone membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.
extrinsic component of presynaptic endocytic zone membrane (GO:0098894)
Namespace: cellular_component
Definition: The component of the presynaptic endocytic zone membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.
postsynaptic endosome membrane (GO:0098895)
Namespace: cellular_component
Definition: The lipid bilayer surrounding a postsynaptic endosome.
postsynaptic early endosome membrane (GO:0098896)
Namespace: cellular_component
Definition: The lipid bilayer surrounding a postsynaptic early endosome.
spine apparatus membrane (GO:0098897)
Namespace: cellular_component
Definition: The lipid bilayer surrounding the spine apparatus.
dense core granule lumen (GO:0098898)
Namespace: cellular_component
Definition: The volume enclosed by the dense core granule membrane.
Synonyms: dense core vesicle lumen
regulation of membrane depolarization during action potential (GO:0098902)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency or extent of membrane depolarization during an action potential. Membrane depolarization is the process in which membrane potential changes in the depolarizing direction from the resting potential.
regulation of membrane repolarization during action potential (GO:0098903)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency or extent of membrane repolarization during an action potential. Membrane repolarization is the process in which membrane potential changes in the repolarizing direction, towards the resting potential.
regulation of AV node cell action potential (GO:0098904)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination in an atrioventricular node myocyte. This typically occurs via modulation of the activity or expression of voltage-gated ion channels.
Synonyms: regulation of atrioventricular node cardiac muscle cell action potential; regulation of AV node cardiac muscle cell action potential
regulation of bundle of His cell action potential (GO:0098905)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination in a cardiac muscle cell of the bundle of His. This typically occurs via modulation of the activity or expression of voltage-gated ion channels.
Synonyms: regulation of bundle of His cardiac muscle cell action potential
regulation of neuronal action potential (GO:0098908)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination in a neuron. This typically occurs via modulation of the activity or expression of voltage-gated ion channels.
Synonyms: generation of action potential
regulation of cardiac muscle cell action potential involved in regulation of contraction (GO:0098909)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination in a cardiac muscle cell contributing to the regulation of its contraction.
regulation of atrial cardiac muscle cell action potential (GO:0098910)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination in an atrial cardiac muscle cell contributing to the regulation of its contraction. This typically occurs via modulation of the activity or expression of voltage-gated ion channels.
membrane depolarization during atrial cardiac muscle cell action potential (GO:0098912)
Namespace: biological_process
Definition: The process in which atrial cardiac muscle cell membrane potential changes in the depolarizing direction from the negative resting potential towards the positive membrane potential that will be the peak of the action potential.
Synonyms: atrial cardiac muscle cell depolarization; atrial depolarization; electrocardiogram PR interval
membrane depolarization during ventricular cardiac muscle cell action potential (GO:0098913)
Namespace: biological_process
Definition: The process in which ventricular cardiac muscle cell membrane potential changes in the depolarizing direction from the negative resting potential towards the positive membrane potential that will be the peak of the action potential.
Synonyms: electrocardiogram QRS complex; ventricular depolarization
membrane repolarization during ventricular cardiac muscle cell action potential (GO:0098915)
Namespace: biological_process
Definition: The process in which ions are transported across a membrane such that the ventricular cardiomyocyte membrane potential changes in the direction from the positive membrane potential at the peak of the action potential towards the negative resting potential.
Synonyms: electrocardiogram T wave; regulation of ventricular cardiac muscle repolarization; ventricular repolarization
anterograde trans-synaptic signaling (GO:0098916)
Namespace: biological_process
Definition: Cell-cell signaling from pre to post-synapse, across the synaptic cleft.
retrograde trans-synaptic signaling (GO:0098917)
Namespace: biological_process
Definition: Cell-cell signaling from post to pre-synapse, across the synaptic cleft.
structural constituent of synapse (GO:0098918)
Namespace: molecular_function
Definition: The action of a molecule that contributes to the structural integrity of a synapse.
structural constituent of postsynaptic density (GO:0098919)
Namespace: molecular_function
Definition: The action of a molecule that contributes to the structural integrity of a postsynaptic density.
retrograde trans-synaptic signaling by lipid (GO:0098920)
Namespace: biological_process
Definition: Cell-cell signaling from postsynapse to presynapse, across the synaptic cleft, mediated by a lipid ligand.
retrograde trans-synaptic signaling by endocannabinoid (GO:0098921)
Namespace: biological_process
Definition: Cell-cell signaling from postsynapse to presynapse, across the synaptic cleft, mediated by an endocannabinoid ligand.
extrinsic component of dense core granule membrane (GO:0098922)
Namespace: cellular_component
Definition: The component of the dense core granule membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.
retrograde trans-synaptic signaling by soluble gas (GO:0098923)
Namespace: biological_process
Definition: Cell-cell signaling from postsynapse to presynapse, across the synaptic cleft, mediated by an soluble gas ligand.
retrograde trans-synaptic signaling by nitric oxide (GO:0098924)
Namespace: biological_process
Definition: Cell-cell signaling from postsynapse to presynapse, across the synaptic cleft, mediated by nitric oxide.
retrograde trans-synaptic signaling by nitric oxide, modulating synaptic transmission (GO:0098925)
Namespace: biological_process
Definition: Modulation of synaptic transmission by cell-cell signaling from postsynapse to presynapse, across the synaptic cleft, mediated by nitric oxide.
Comment: Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua.
postsynaptic signal transduction (GO:0098926)
Namespace: biological_process
Definition: Signal transduction in which the initial step occurs in a postsynapse.
Synonyms: postsynaptic signaling pathway
vesicle-mediated transport between endosomal compartments (GO:0098927)
Namespace: biological_process
Definition: A cellular transport process in which transported substances are moved in membrane-bounded vesicles between endosomal compartments, e.g, between early endosome and sorting endosome.
presynaptic signal transduction (GO:0098928)
Namespace: biological_process
Definition: Signal transduction in which the initial step occurs in a presynapse.
Synonyms: presynaptic signaling pathway
obsolete extrinsic component of spine apparatus membrane (GO:0098929)
Namespace: cellular_component
Definition: OBSOLETE. The component of the spine apparatus membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.
Comment: This term was obsoleted because it represents protein topology, not a cellular component.
axonal transport (GO:0098930)
Namespace: biological_process
Definition: The directed movement of organelles or molecules along microtubules in axons.
Synonyms: axon cargo transport; axoplasmic transport
virion attachment to host cell flagellum (GO:0098931)
Namespace: biological_process
Definition: The process by which a virion attaches to a the host cell flagellum. Some DNA bacterial viruses use flagella to attach to the host cell. This contact with the flagellum facilitates concentration of phage particles around the entry receptor on the bacterial cell surface.
symbiont entry into host cell via disruption of host cell wall peptidoglycan (GO:0098932)
Namespace: biological_process
Definition: The disruption by a symbiont of host cell wall peptidoglycans to allow entry into the host cell.
Synonyms: catabolism of host cell wall peptidoglycan by virus; degradation of host cell wall peptidoglycan by virus; degradation of host peptidoglycans during virus entry; disassembly by virus of host cell wall peptidoglycan; disruption by virus of host cell wall peptidoglycan during virus entry
symbiont-mediated disruption of host cell envelope (GO:0098933)
Namespace: biological_process
Definition: The process in which a symbiont effects a change that impairs the structure or function of the host cell envelope. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Synonyms: disruption by symbiont of host cell envelope
retrograde dendritic transport (GO:0098934)
Namespace: biological_process
Definition: The directed movement of organelles or molecules along microtubules in a dendrite from the postsynapse towards the cell body.
dendritic transport (GO:0098935)
Namespace: biological_process
Definition: The directed movement of organelles or molecules along microtubules in dendrites.
Synonyms: dendrite cargo transport
obsolete intrinsic component of postsynaptic membrane (GO:0098936)
Namespace: cellular_component
Definition: OBSOLETE. The component of the postsynaptic membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.
Synonyms: intrinsic to postsynaptic membrane
Comment: This term was obsoleted because it represents protein topology, not a cellular component.
anterograde dendritic transport (GO:0098937)
Namespace: biological_process
Definition: The directed movement of organelles or molecules along microtubules from the cell body toward the postsynapse in dendrites.
actin cytoskeleton of dendritic spine (GO:0098938)
Namespace: cellular_component
Definition: The actin cytoskeleton that is part of a dendritic spine.
dendritic transport of mitochondrion (GO:0098939)
Namespace: biological_process
Definition: The directed movement of mitochondria along microtubules in nerve cell dendrites.
anterograde trans-synaptic signaling by nitric oxide (GO:0098940)
Namespace: biological_process
Definition: Cell-cell signaling from presynapse to postynapse, across the synaptic cleft, mediated by nitric oxide.
anterograde trans-synaptic signaling by trans-synaptic protein complex (GO:0098941)
Namespace: biological_process
Definition: Cell-cell signaling from presynapse to postynapse, across the synaptic cleft, mediated by a trans-synaptic protein complex.
retrograde trans-synaptic signaling by trans-synaptic protein complex (GO:0098942)
Namespace: biological_process
Definition: Cell-cell signaling from postsynapse to presynapse, across the synaptic cleft, mediated by trans-synaptic protein complex.
neurotransmitter receptor transport, postsynaptic endosome to lysosome (GO:0098943)
Namespace: biological_process
Definition: The directed movement of neurotransmitter receptor from the postsynaptic endosome in tranpsort vesicles to the lysosome for degradation.
Synonyms: postsynaptic neurotransmitter receptor endosomal trafficking
postsynaptic recycling endosome membrane (GO:0098944)
Namespace: cellular_component
Definition: The lipid bilayer surrounding a postsynaptic recycling endosome.
obsolete intrinsic component of presynaptic active zone membrane (GO:0098945)
Namespace: cellular_component
Definition: OBSOLETE. The component of the presynaptic active zone membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.
Synonyms: intrinsic to presynaptic active zone membrane
Comment: This term was obsoleted because it represents protein topology, not a cellular component.
obsolete intrinsic component of presynaptic endocytic zone membrane (GO:0098946)
Namespace: cellular_component
Definition: OBSOLETE. The component of the presynaptic endocytic zone membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.
Synonyms: intrinsic to presynaptic active zone membrane
Comment: This term was obsoleted because it represents protein topology, not a cellular component.
obsolete intrinsic component of postsynaptic endocytic zone membrane (GO:0098947)
Namespace: cellular_component
Definition: OBSOLETE. The component of the postsynaptic endocytic zone membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.
Synonyms: intrinsic to postsynaptic active zone membrane
Comment: This term was obsoleted because it represents protein topology, not a cellular component.
obsolete intrinsic component of postsynaptic endosome membrane (GO:0098949)
Namespace: cellular_component
Definition: OBSOLETE. The component of the postsynaptic endosome membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.
Synonyms: intrinsic to postsynaptic endosome membrane
Comment: This term was obsoleted because it represents protein topology, not a cellular component.
obsolete intrinsic component of postsynaptic early endosome membrane (GO:0098950)
Namespace: cellular_component
Definition: OBSOLETE. The component of the postsynaptic early endosome membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.
Synonyms: intrinsic to postsynaptic early endosome membrane
Comment: This term was obsoleted because it represents protein topology, not a cellular component.
obsolete intrinsic component of postsynaptic recycling endosome membrane (GO:0098951)
Namespace: cellular_component
Definition: OBSOLETE. The component of the postsynaptic recycling endosome membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.
Synonyms: intrinsic to postsynaptic recycling endosome membrane
Comment: This term was obsoleted because it represents protein topology, not a cellular component.
obsolete intrinsic component of spine apparatus membrane (GO:0098952)
Namespace: cellular_component
Definition: OBSOLETE. The component of the spine apparatus membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.
Synonyms: intrinsic to spine apparatus membrane
Comment: This term was obsoleted because it represents protein topology, not a cellular component.
receptor diffusion trapping (GO:0098953)
Namespace: biological_process
Definition: The process by which a membrane receptor, diffusing freely within the plasma membeane, becomes trapped in some plasma membrane region. This can happen when a receptor bind, directly or indirectly, to some component of the underlying matrix.
presynaptic endosome membrane (GO:0098954)
Namespace: cellular_component
Definition: The lipid bilayer surrounding a presynaptic endosome.
obsolete intrinsic component of presynaptic endosome membrane (GO:0098955)
Namespace: cellular_component
Definition: OBSOLETE. The component of the presynaptic endosome membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.
Synonyms: intrinsic to presynaptic endosome membrane
Comment: This term was obsoleted because it represents protein topology, not a cellular component.
anterograde axonal transport of mitochondrion (GO:0098957)
Namespace: biological_process
Definition: The directed movement of mitochondria along microtubules in axons away from the cell body and towards the presynapse.
Synonyms: anterograde axon transport of mitochondria
retrograde axonal transport of mitochondrion (GO:0098958)
Namespace: biological_process
Definition: The directed movement of mitochondria along microtubules in axons towards the cell body and away from the presynapse.
Synonyms: retrograde axon transport of mitochondria
retrograde dendritic transport of mitochondrion (GO:0098959)
Namespace: biological_process
Definition: The directed movement of mitochondria along microtubules in dendrites towards the cell body and away from the postsynapse.
Synonyms: retrograde dendrite transport of mitochondria
postsynaptic neurotransmitter receptor activity (GO:0098960)
Namespace: molecular_function
Definition: Neurotransmitter receptor activity occurring in the postsynaptic membrane during synaptic transmission.
Synonyms: neurotransmitter receptor activity involved in chemical synaptic transmission
dendritic transport of ribonucleoprotein complex (GO:0098961)
Namespace: biological_process
Definition: The directed movement of a ribonucleoprotein complex along microtubules in nerve cell dendrites.
Synonyms: dendritic transport of RNP complex
obsolete regulation of postsynaptic neurotransmitter receptor activity (GO:0098962)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of neurotransmitter receptor activity involved in synaptic transmission. Modulation may be via an effect on ligand affinity, or effector function such as ion selectivity or pore opening/closing in ionotropic receptors.
Comment: This term was obsoleted because it represents a molecular function. Consider molecular function regulator activity ; GO:0098772 or a child.
dendritic transport of messenger ribonucleoprotein complex (GO:0098963)
Namespace: biological_process
Definition: The directed movement of a messenger ribonucleoprotein complex along microtubules in nerve cell dendrites.
Synonyms: dendritic transport of mRNA RNP complex
anterograde dendritic transport of messenger ribonucleoprotein complex (GO:0098964)
Namespace: biological_process
Definition: The directed movement of a messenger ribonucleoprotein complex along microtubules in nerve cell dendrites towards the postsynapse.
Synonyms: anterograde dendritic transport of mRNA RNP complex
extracellular matrix of synaptic cleft (GO:0098965)
Namespace: cellular_component
Definition: The portion of the extracellular matrix that lies within the synaptic cleft.
Synonyms: ECM of synaptic cleft; synaptic cleft ECM
perisynaptic extracellular matrix (GO:0098966)
Namespace: cellular_component
Definition: The portion of the extracellular matrix that lies within the perisynaptic space.
Synonyms: extrasynaptic extracellular matrix; perisynaptic ECM
exocytic insertion of neurotransmitter receptor to postsynaptic membrane (GO:0098967)
Namespace: biological_process
Definition: The exocytic fusion of neurotransmitter receptor containing vesicles with the postsynaptic membrane resulting in the integration of NT receptors, enabling them to participate in neurotransmitter reception. This process includes tethering and docking steps that prepare vesicles for fusion.
neurotransmitter receptor transport postsynaptic membrane to endosome (GO:0098968)
Namespace: biological_process
Definition: Vesicle-mediated transport of a neurotransmitter receptor complex from the postsynaptic membrane to the postsynaptic early endosome.
neurotransmitter receptor transport to postsynaptic membrane (GO:0098969)
Namespace: biological_process
Definition: The directed movement of neurotransmitter receptor to the postsynaptic membrane in transport vesicles.
postsynaptic neurotransmitter receptor diffusion trapping (GO:0098970)
Namespace: biological_process
Definition: The process by which diffusing neurotransmitter receptor becomes trapped at the postsynaptic specialization membrane. This is typically due to interaction with components of the post-synaptic specialization.
anterograde dendritic transport of neurotransmitter receptor complex (GO:0098971)
Namespace: biological_process
Definition: The directed movement of a neurotransmitter receptor complex along microtubules in nerve cell dendrites towards the postsynapse.
anterograde dendritic transport of mitochondrion (GO:0098972)
Namespace: biological_process
Definition: The directed movement of mitochondria along microtubules in dendrites towards the postsynapse and away from the cell body.