LiteFold/GO huggingface dataset:
lipid oxidation (GO:0034440)
Namespace: biological_process
Definition: The removal of one or more electrons from a lipid, with or without the concomitant removal of a proton or protons, by reaction with an electron-accepting substance, by addition of oxygen or by removal of hydrogen.
plasma lipoprotein particle oxidation (GO:0034441)
Namespace: biological_process
Definition: The modification of a lipid or protein within a plasma lipoprotein particle by oxidation of the lipid or one or more amino acids.
Synonyms: plasma lipoprotein oxidation
regulation of lipoprotein oxidation (GO:0034442)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of lipoprotein oxidation.
negative regulation of lipoprotein oxidation (GO:0034443)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of lipoprotein oxidation.
Synonyms: inhibition of lipoprotein oxidation
regulation of plasma lipoprotein oxidation (GO:0034444)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of lipoprotein oxidation, occurring in the blood plasma.
Synonyms: regulation of plasma lipoprotein particle oxidation
negative regulation of plasma lipoprotein oxidation (GO:0034445)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of lipoprotein particle oxidation, occurring in the blood plasma.
Synonyms: inhibition of plasma lipoprotein oxidation; negative regulation of plasma lipoprotein particle oxidation
substrate adhesion-dependent cell spreading (GO:0034446)
Namespace: biological_process
Definition: The morphogenetic process that results in flattening of a cell as a consequence of its adhesion to a substrate.
Synonyms: cell spreading during cell substrate adhesion; substrate adhesion dependent cell spreading
ubiquitin-ubiquitin ligase activity (GO:0034450)
Namespace: molecular_function
Definition: Isoenergetic transfer of ubiquitin from one protein to an existing ubiquitin chain via the reaction X-ubiquitin + Y-ubiquitin = Y-ubiquitin-ubiquitin + X, where both the X-ubiquitin and Y-ubiquitin-ubiquitin linkages are thioester bonds between the C-terminal glycine of ubiquitin and a sulfhydryl side group of a cysteine residue.
Synonyms: E4
centriolar satellite (GO:0034451)
Namespace: cellular_component
Definition: A small (70-100 nm) cytoplasmic granule that contains a number of centrosomal proteins; centriolar satellites traffic toward microtubule minus ends and are enriched near the centrosome.
dynactin binding (GO:0034452)
Namespace: molecular_function
Definition: Binding to a dynactin complex; a large protein complex that activates dynein-based motor activity.
microtubule anchoring (GO:0034453)
Namespace: biological_process
Definition: Any process in which a microtubule is maintained in a specific location in a cell.
microtubule anchoring at centrosome (GO:0034454)
Namespace: biological_process
Definition: Any process in which a microtubule is maintained in a specific location in a cell by attachment to a centrosome.
t-UTP complex (GO:0034455)
Namespace: cellular_component
Definition: A protein complex that forms a subcomplex of the 90S preribosome and is required for the subsequent assembly of the rest of the preribosome. In S. cerevisiae, it is composed of Utp5p, Utp4p, Nan1p, Utp8p, Utp9p, Utp10 and Utp15p.
Synonyms: Nan1p-containing subcomplex of 90S preribosome
Comment: Note that the term name uses Saccharomyces gene product names because no other names have yet arisen for this complex; the term nevertheless can be used for analogous complexes in other eukaryotes, and the name can be changed if better wording is found.
UTP-C complex (GO:0034456)
Namespace: cellular_component
Definition: A protein complex that forms a subcomplex of the 90S preribosome. In S. cerevisiae, it is composed of Rrp7p, Utp22p, Ckb1p, Cka1p, Ckb2p and Cka2p.
Synonyms: Rrp7p-containing subcomplex of 90S preribosome
Comment: Note that the term name uses Saccharomyces gene product names because no other names have yet arisen for this complex; the term nevertheless can be used for analogous complexes in other eukaryotes, and the name can be changed if better wording is found.
Mpp10 complex (GO:0034457)
Namespace: cellular_component
Definition: A protein complex that forms a subcomplex of the 90S preribosome. In S. cerevisiae, it is composed of Mpp10p, Imp3p and Imp4p.
Comment: Note that the term name uses Saccharomyces gene product names because no other names have yet arisen for this complex; the term nevertheless can be used for analogous complexes in other eukaryotes, and the name can be changed if better wording is found.
uropod assembly (GO:0034460)
Namespace: biological_process
Definition: The assembly of a uropod by rearrangement of the cytoskeleton and overlying membrane.
Synonyms: uropod formation
uropod retraction (GO:0034461)
Namespace: biological_process
Definition: The process in which a uropod detaches from the cell substrate and retracts the rear of a migrating cell.
small-subunit processome assembly (GO:0034462)
Namespace: biological_process
Definition: The aggregation, arrangement and bonding together of proteins and RNA molecules to form a small-subunit processome.
Synonyms: small subunit processome assembly; SSU processome assembly
response to carbon monoxide (GO:0034465)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a carbon monoxide (CO) stimulus.
chromaffin granule lumen (GO:0034466)
Namespace: cellular_component
Definition: The volume enclosed by the membrane of a chromaffin granule.
esterosome lumen (GO:0034467)
Namespace: cellular_component
Definition: The volume enclosed by the membrane of an esterosome.
glycosome lumen (GO:0034468)
Namespace: cellular_component
Definition: The volume enclosed by the membrane of a glycosome.
Golgi stack lumen (GO:0034469)
Namespace: cellular_component
Definition: The volume enclosed by any of the membranes of the thin, flattened cisternae that form the central portion of the Golgi complex.
obsolete ncRNA processing (GO:0034470)
Namespace: biological_process
Definition: OBSOLETE. Any process that results in the conversion of one or more primary non-coding RNA (ncRNA) transcripts into one or more mature ncRNA molecules.
Comment: The reason for obsoletion is that this term was an unnecessary grouping term.
obsolete ncRNA 5'-end processing (GO:0034471)
Namespace: biological_process
Definition: OBSOLETE. Any process involved in forming the mature 5' end of a non-coding RNA molecule.
Comment: The reason for obsoletion is that this term was an unnecessary grouping term.
snRNA 3'-end processing (GO:0034472)
Namespace: biological_process
Definition: Any process involved in forming the mature 3' end of an snRNA molecule.
Synonyms: snRNA 3' end processing
U2 snRNA 3'-end processing (GO:0034474)
Namespace: biological_process
Definition: Any process involved in forming the mature 3' end of a U2 snRNA molecule.
Synonyms: U2 snRNA 3' end processing
U4 snRNA 3'-end processing (GO:0034475)
Namespace: biological_process
Definition: Any process involved in forming the mature 3' end of a U4 snRNA molecule.
Synonyms: U4 snRNA 3' end processing
U5 snRNA 3'-end processing (GO:0034476)
Namespace: biological_process
Definition: Any process involved in forming the mature 3' end of a U5 snRNA molecule.
Synonyms: U5 snRNA 3' end processing
U6 snRNA 3'-end processing (GO:0034477)
Namespace: biological_process
Definition: Any process involved in forming the mature 3' end of a U6 snRNA molecule.
Synonyms: U6 snRNA 3' end processing
phosphatidylglycerol catabolic process (GO:0034478)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of phosphatidylglycerols, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of glycerol.
Synonyms: phosphatidylglycerol breakdown; phosphatidylglycerol catabolism; phosphatidylglycerol degradation
phosphatidylglycerol phospholipase C activity (GO:0034479)
Namespace: molecular_function
Definition: Catalysis of the reaction: a 1,2-diacyl-sn-glycero-3-phospho-(1'-sn-glycerol) + H2O = sn-glycerol 3-phosphate + a 1,2-diacyl-sn-glycerol + H+.
Synonyms: phosphatidylglycerol phospholipase C-type activity
chondroitin sulfotransferase activity (GO:0034481)
Namespace: molecular_function
Definition: Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + chondroitin = adenosine 3',5'-bisphosphate + chondroitin sulfate.
chondroitin 2-sulfotransferase activity (GO:0034482)
Namespace: molecular_function
Definition: Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + chondroitin = adenosine 3',5'-bisphosphate + chondroitin 2'-O-sulfate. Results in sulfation of glucuronic acid and iduronic acid residues.
Synonyms: chondroitin 2-O-sulfotransferase activity; chondroitin 2-O-sulphotransferase activity
heparan sulfate sulfotransferase activity (GO:0034483)
Namespace: molecular_function
Definition: Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + heparan sulfate = adenosine 3',5'-bisphosphate + sulfated heparan sulfate.
raffinose catabolic process (GO:0034484)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of raffinose, the trisaccharide beta-D-fructofuranosyl alpha-D-galactopyranosyl-(1->6)-alpha-D-glucopyranoside.
Synonyms: raffinose breakdown; raffinose catabolism; raffinose degradation
phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity (GO:0034485)
Namespace: molecular_function
Definition: 1,2-diacyl-sn-glycero-3-phospho-(1D-myo-inositol-3,4,5-trisphosphate) + H2O = 1,2-diacyl-sn-glycero-3-phospho-(1D-myo-inositol-3,4-bisphosphate) + phosphate.
vacuolar transmembrane transport (GO:0034486)
Namespace: biological_process
Definition: The process in which a solute is transported from one side of the vacuolar membrane to the other.
Synonyms: vacuolar membrane transport
Comment: Note that this term is not intended for use in annotating lateral movement within membranes.
vacuolar amino acid transmembrane transport (GO:0034487)
Namespace: biological_process
Definition: The process in which an amino acid is transported from one side of the vacuolar membrane to the other.
Synonyms: vacuolar amino acid membrane transport
Comment: Note that this term is not intended for use in annotating lateral movement within membranes.
basic amino acid transmembrane export from vacuole (GO:0034488)
Namespace: biological_process
Definition: The directed movement of basic amino acids out of the vacuole, across the vacuolar membrane.
neutral amino acid transmembrane export from vacuole (GO:0034489)
Namespace: biological_process
Definition: The directed movement of neutral amino acids out of the vacuole, across the vacuolar membrane.
basic amino acid transmembrane import into vacuole (GO:0034490)
Namespace: biological_process
Definition: The directed movement of basic amino acids into the vacuole across the vacuolar membrane.
neutral amino acid transmembrane import into vacuole (GO:0034491)
Namespace: biological_process
Definition: The directed movement of neutral amino acids into the vacuole across the vacuolar membrane.
hydrogenosome lumen (GO:0034492)
Namespace: cellular_component
Definition: The volume enclosed by the hydrogenosome membrane.
melanosome lumen (GO:0034493)
Namespace: cellular_component
Definition: The volume enclosed by the melanosome membrane.
microneme lumen (GO:0034494)
Namespace: cellular_component
Definition: The volume enclosed by the microneme membrane.
protein storage vacuole lumen (GO:0034495)
Namespace: cellular_component
Definition: The volume enclosed by the protein storage vacuole membrane.
multivesicular body membrane disassembly (GO:0034496)
Namespace: biological_process
Definition: The controlled breakdown of the membranes of multivesicular bodies.
Synonyms: MVB membrane disassembly
protein localization to phagophore assembly site (GO:0034497)
Namespace: biological_process
Definition: Any process in which a protein is transported to, or maintained at, the phagophore assembly site (PAS).
Synonyms: protein localisation to phagophore assembly site; protein localization to PAS; protein localization to pre-autophagosomal structure
late endosome to Golgi transport (GO:0034499)
Namespace: biological_process
Definition: The directed movement of substances from late endosomes to the Golgi.
Synonyms: prevacuolar endosome to Golgi transport; PVE to Golgi transport
protein localization to kinetochore (GO:0034501)
Namespace: biological_process
Definition: Any process in which a protein is transported to, or maintained at, the kinetochore.
Synonyms: condensin localization to kinetochore; protein localisation to kinetochore
protein localization to nucleolar rDNA repeats (GO:0034503)
Namespace: biological_process
Definition: Any process in which a protein is transported to, or maintained at, the rDNA repeats on a chromosome in the nucleolus.
Synonyms: condensin localization to nucleolar rDNA repeats; protein localisation to nucleolar rDNA repeats
protein localization to nucleus (GO:0034504)
Namespace: biological_process
Definition: A process in which a protein transports or maintains the localization of another protein to the nucleus.
Synonyms: protein localisation to nucleus; protein localization in cell nucleus; protein localization in nucleus; protein targeting to nucleus
tooth mineralization (GO:0034505)
Namespace: biological_process
Definition: The process in which calcium salts are deposited into calcareous tooth structures such as dental enamel, dentin and cementum.
Synonyms: tooth calcification
chromosome, centromeric core domain (GO:0034506)
Namespace: cellular_component
Definition: The innermost portion of the centromeric region of a chromosome, encompassing the core region of a chromosome centromere and the proteins that bind to it.
Synonyms: chromosome, centric core region; chromosome, centromeric core region
obsolete centromere complex assembly (GO:0034508)
Namespace: biological_process
Definition: OBSOLETE. The aggregation, arrangement and bonding together of proteins and centromeric DNA molecules to form a centromeric protein-DNA complex. Includes the formation of the chromatin structures which form a platform for the kinetochore, and assembly of the kinetochore onto this specialized chromatin. In fission yeast and higher eukaryotes this process also includes the formation of heterochromatin at the outer repeat (pericentric) regions of the centromere.
Synonyms: centromere assembly; centromere organization; chromosome, centromeric region assembly
Comment: This term was obsoleted because it is an unnecessary grouping term.
centromere separation (GO:0034510)
Namespace: biological_process
Definition: The cell cycle process in which centromeres are physically detached from each other during chromosome separation.
box C/D sno(s)RNA binding (GO:0034512)
Namespace: molecular_function
Definition: Binding to a box C/D small nucleolar RNA.
Synonyms: box C/D snoRNA binding; box C/D sRNA binding
box H/ACA snoRNA binding (GO:0034513)
Namespace: molecular_function
Definition: Binding to a box H/ACA small nucleolar RNA.
mitochondrial unfolded protein response (GO:0034514)
Namespace: biological_process
Definition: The series of molecular signals generated as a consequence of the presence of unfolded proteins in the mitochondrial matrix; results in transcriptional upregulation of nuclear genes encoding mitochondrial stress proteins.
Synonyms: mtUPR
proteasome storage granule (GO:0034515)
Namespace: cellular_component
Definition: An aggregation of proteasome core protease (CP) and regulatory particle (RP) complexes that localizes in the cytoplasm as dot-like structures when cells are in a quiescent state.
Synonyms: PSG
response to vitamin B6 (GO:0034516)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin B6 stimulus. Vitamin B6 encompasses pyridoxal, pyridoxamine and pyridoxine and the active form, pyridoxal phosphate.
ribophagy (GO:0034517)
Namespace: biological_process
Definition: The selective degradation of mature ribosomes by macroautophagy.
RNA cap binding complex (GO:0034518)
Namespace: cellular_component
Definition: A protein complex that binds to an RNA cap structure to mediate RNA processing and/or translation initiation.
obsolete cytoplasmic RNA cap binding complex (GO:0034519)
Namespace: cellular_component
Definition: OBSOLETE. A protein complex found in the cytoplasm that binds the 5' cap structure of an mRNA, and typically consists of the cap-binding protein eIF4E, the adaptor protein eIF4G, and a multi-factor complex comprising eIF1, eIF2, eIF3 and eIF5. This complex mediates recruitment of the 40S subunit to mRNA.
Comment: This term was obsoleted because it represents the same complex as the eukaryotic translation initiation factor 4F complex ; GO:0016281.
obsolete 2-naphthaldehyde dehydrogenase activity (GO:0034520)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: 2-naphthaldehyde + NAD+ + H2O = 2-naphthoate + NADH + H+.
Comment: This term was obsoleted because there is no evidence that this specific activity exists.
obsolete 1-naphthoic acid dioxygenase activity (GO:0034521)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: 1-naphthoic acid + NADH + O2 + H+ = cis-1,2-dihydroxy-1,2-dihydro-8-carboxynaphthalene + NAD+.
Comment: This term was obsoleted because there is no evidence that this specific activity exists.
obsolete cis-1,2-dihydroxy-1,2-dihydro-8-carboxynaphthalene dehydrogenase activity (GO:0034522)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: cis-1,2-dihydroxy-1,2-dihydro-8-carboxynaphthalene = 1,2-dihydroxy-8-carboxynaphthalene + 2 H+ + 2 e-.
Comment: This term was obsoleted because there is no evidence that this specific reaction exists.
obsolete 3-formylsalicylate oxidase activity (GO:0034523)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: 3-formylsalicylic acid + O2 + H2O = 2-hydroxyisophthalic acid + hydrogen peroxide.
Comment: This term was obsoleted because there is no evidence that this specific reaction exists.
obsolete 2-hydroxyisophthalate decarboxylase activity (GO:0034524)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: 2-hydroxyisophthalic acid = salicylate + CO2.
Comment: This term was obsoleted because there is no evidence that this specific reaction exists.
obsolete 2-methylnaphthalene hydroxylase activity (GO:0034526)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: 2-methylnaphthalene + NADH + O2 + H+ = 2-hydroxymethylnaphthalene + NAD+ + H2O.
Comment: This term was obsoleted because there is no evidence that this specific activity exists.
obsolete 1,2-dihydroxy-8-carboxynaphthalene dioxygenase activity (GO:0034527)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: 1,2-dihydroxy-8-carboxynaphthalene + O2 = 2-carboxy-2-hydroxy-8-carboxychromene.
Comment: This term was obsoleted because there is no evidence that this specific reaction exists.
obsolete 2-carboxy-2-hydroxy-8-carboxychromene isomerase activity (GO:0034528)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: 2-carboxy-2-hydroxy-8-carboxychromene = 2-hydroxy-3-carboxybenzalpyruvate.
Comment: This term was obsoleted because there is no evidence that this specific activity exists.
obsolete 4-hydroxymethylsalicyaldehyde dehydrogenase activity (GO:0034530)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: 4-hydroxymethylsalicylaldehyde + NAD+ + H2O = 4-hydroxymethylsalicylate + NADH + 2 H+.
Comment: This term was obsoleted because there is no evidence that this specific activity exists.
obsolete 2-hydroxy-4-hydroxymethylbenzalpyruvate hydratase-aldolase activity (GO:0034531)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: 2-hydroxy-4-hydroxymethylbenzalpyruvate + H2O = pyruvate + 4-hydroxymethylsalicylaldehyde.
Comment: This term was obsoleted because there is no evidence that this specific reaction exists.
obsolete 2-hydroxy-7-hydroxymethylchromene-2-carboxylate isomerase activity (GO:0034532)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: 2-hydroxy-7-hydroxymethylchromene-2-carboxylate = 2-hydroxy-4-hydroxymethylbenzalpyruvate.
Comment: This term was obsoleted because there is no evidence that this specific activity exists.
obsolete 1,2-dihydroxy-7-hydroxymethylnaphthalene dioxygenase activity (GO:0034533)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: 1,2-dihydroxy-7-hydroxymethylnaphthalene + O2 = 2-hydroxy-7-hydroxymethylchromene-2-carboxylate.
Comment: This term was obsoleted because there is no evidence that this specific reaction exists.
obsolete 1,2-dihydroxy-8-methylnaphthalene dioxygenase activity (GO:0034535)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: 1,2-dihydroxy-8-methylnaphthalene + O2 = 2-hydroxy-8-methylchromene-2-carboxylate + H+.
Comment: This term was obsoleted because there is no evidence that this specific reaction exists.
obsolete 2-hydroxy-3-methylbenzalpyruvate hydratase-aldolase activity (GO:0034537)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: 2-hydroxy-3-methylbenzalpyruvate + H2O = pyruvate + 3-methylsalicylaldehyde.
Comment: This term was obsoleted because there is no evidence that this specific reaction exists.
obsolete 3-methylsalicylaldehyde dehydrogenase activity (GO:0034538)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: 3-methylsalicylaldehyde + NAD+ = 3-methylsalicylate + NADH + H+.
Comment: This term was obsoleted because there is no evidence that this specific reaction exists.
obsolete 3,3',5,5'-tetrabromobisphenol A reductive dehalogenase activity (GO:0034539)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: 3,3',5,5'-tetrabromobisphenol A + 2 H+ + 2 e- = 3,3',5-tribromobisphenol A + HBr.
Comment: This term was obsoleted because there is no evidence that this specific activity exists.
obsolete 3-monobromobisphenol A reductive dehalogenase activity (GO:0034540)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: 3-monobromobisphenol A + 2 H+ + 2 e- = bisphenol A + HBr.
Comment: This term was obsoleted because there is no evidence that this specific activity exists.
obsolete dimethylarsinite methyltransferase activity (GO:0034541)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: dimethylarsenous acid + R2S-CH3 = trimethylarsine oxide + R2SH.
Comment: This term was obsoleted because there is no evidence that this specific reaction exists.
obsolete trimethylarsine oxidase activity (GO:0034542)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: trimethylarsine oxide + 2 H+ + 2 e- = trimethylarsine + H2O.
Comment: This term was obsoleted because there is no evidence that this specific activity exists.
obsolete 5-aminosalicylate dioxygenase activity (GO:0034543)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: 5-aminosalicylate + O2 = cis-4-amino-6-carboxy-2-oxo-hexa-3,5-dienoate.
Comment: This term was obsoleted because there is no evidence that this specific activity exists.
obsolete trans-ACOHDA hydrolase activity (GO:0034544)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: trans-4-amino-6-carboxy-2-oxo-hexa-3,5-dienoate + H2O = fumarylpyruvate + NH3.
Comment: This term was obsoleted because there is no evidence that this specific activity exists.
fumarylpyruvate hydrolase activity (GO:0034545)
Namespace: molecular_function
Definition: Catalysis of the reaction: fumarylpyruvate + H2O = fumarate + pyruvate + H+.