LiteFold/GO huggingface dataset:
crystalloid (GO:0044312)
Namespace: cellular_component
Definition: A transient, cytoplasmic organelle found in Plasmodium species that resembles a cytoplasmic inclusion body and whose function is poorly understood. Crystalloids form in ookinetes and disappear after ookinete-to-oocyst transformation.
protein K6-linked deubiquitination (GO:0044313)
Namespace: biological_process
Definition: A protein deubiquitination process in which a K6-linked ubiquitin chain, i.e. a polymer of ubiquitin formed by linkages between lysine residues at position 6 of the ubiquitin monomers, is removed from a protein.
protein K27-linked ubiquitination (GO:0044314)
Namespace: biological_process
Definition: A protein ubiquitination process in which a polymer of ubiquitin, formed by linkages between lysine residues at position 27 of the ubiquitin monomers, is added to a protein.
Synonyms: protein K27-linked polyubiquitination
protein secretion by the type VII secretion system (GO:0044315)
Namespace: biological_process
Definition: The process in which proteins are transferred into the extracellular milieu or directly into host cells, via the type VII protein secretion system.
cone cell pedicle (GO:0044316)
Namespace: cellular_component
Definition: A specialized axon terminus which is produced by retinal cone cells. Pedicles are large, conical, flat end-feet (8-10 micrometers diameter) of the retinal cone axon that lie more or less side by side on the same plane at the outer edge of the outer plexiform layer (OPL).
Synonyms: cone pedicle
rod spherule (GO:0044317)
Namespace: cellular_component
Definition: A specialized neuron projection which is the site of synaptic transmission produced by retinal rod cells. Rod spherules are small round enlargements of the axon (3-5 micrometers diameter) or even extensions of the cell body.
Synonyms: rod cell spherule; rod photoreceptor spherule
obsolete L-aspartate:fumarate oxidoreductase activity (GO:0044318)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: L-aspartate + fumarate = alpha-iminosuccinate + succinate.
Comment: This term was obsoleted because it represents the same activity as L-aspartate oxidase activity ; GO:0008734, with a different electron acceptor.
wound healing, spreading of cells (GO:0044319)
Namespace: biological_process
Definition: The migration of a cell along or through a wound gap that contributes to the reestablishment of a continuous surface.
Synonyms: cell migration involved in wound healing epiboly
response to leptin (GO:0044321)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a leptin stimulus. Leptin is a hormone manufactured primarily in the adipocytes of white adipose tissue, and the level of circulating leptin is directly proportional to the total amount of fat in the body. It plays a key role in regulating energy intake and energy expenditure, including appetite and metabolism].
Synonyms: response to leptin stimulus
endoplasmic reticulum quality control compartment (GO:0044322)
Namespace: cellular_component
Definition: A subcompartment of the endoplasmic reticulum in which proteins with improper or incorrect folding accumulate. Enzymes in this compartment direct proteins with major folding problems to translocation to the cytosol and degradation, and proteins with minor folding problems to the ER, to interact with chaperon proteins.
Synonyms: ER quality control compartment; ER-derived quality control compartment; ERQC
obsolete regulation of transcription involved in anterior/posterior axis specification (GO:0044324)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of transcription that contributes to the specification of the anterior/posterior axis.
Comment: This term was obsoleted because it represents a GO-CAM model.
transmembrane transporter binding (GO:0044325)
Namespace: molecular_function
Definition: Binding to a transmembrane transporter, a protein or protein complex that enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other.
Synonyms: ion channel binding
dendritic spine neck (GO:0044326)
Namespace: cellular_component
Definition: Part of the dendritic spine that connects the dendritic shaft to the head of the dendritic spine.
Synonyms: neck; pedicle; spine neck
dendritic spine head (GO:0044327)
Namespace: cellular_component
Definition: Distal part of the dendritic spine, that carries the post-synaptic density.
Synonyms: spine head
obsolete canonical Wnt signaling pathway involved in positive regulation of endothelial cell migration (GO:0044328)
Namespace: biological_process
Definition: OBSOLETE. The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes involved in the positive regulation of endothelial cell migration.
Synonyms: canonical Wnt receptor signaling pathway involved in positive regulation of endothelial cell migration; canonical Wnt receptor signalling pathway involved in positive regulation of endothelial cell migration
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete canonical Wnt signaling pathway involved in positive regulation of cell-cell adhesion (GO:0044329)
Namespace: biological_process
Definition: OBSOLETE. The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes involved in the positive regulation of cell to cell adhesion.
Synonyms: canonical Wnt receptor signaling pathway involved in positive regulation of cell-cell adhesion; canonical Wnt receptor signalling pathway involved in positive regulation of cell-cell adhesion; canonical Wnt-activated signaling pathway involved in positive regulation of cell-cell adhesion
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete canonical Wnt signaling pathway involved in positive regulation of wound healing (GO:0044330)
Namespace: biological_process
Definition: OBSOLETE. The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes involved in positive regulation of wound healing.
Synonyms: canonical Wnt receptor signaling pathway involved in positive regulation of wound healing; canonical Wnt receptor signalling pathway involved in positive regulation of wound healing; canonical Wnt-activated signaling pathway involved in positive regulation of wound healing
Comment: This term was obsoleted because it represents a GO-CAM model.
cell-cell adhesion mediated by cadherin (GO:0044331)
Namespace: biological_process
Definition: The attachment of one cell to another cell via a cadherin, transmembrane proteins having repeating extracellular calcium ion binding domains.
obsolete Wnt signaling pathway involved in dorsal/ventral axis specification (GO:0044332)
Namespace: biological_process
Definition: OBSOLETE. The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell contributing to the establishment, maintenance and elaboration of the dorsal/ventral axis.
Synonyms: Wnt receptor signaling pathway involved in dorsal/ventral axis specification; Wnt receptor signalling pathway involved in dorsal/ventral axis specification; Wnt-activated signaling pathway involved in dorsal/ventral axis specification
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete canonical Wnt signaling pathway involved in positive regulation of epithelial to mesenchymal transition (GO:0044334)
Namespace: biological_process
Definition: OBSOLETE. The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes involved in the positive regulation of epithelial cell to mesenchymal cell transition.
Synonyms: canonical Wnt receptor signaling pathway involved in positive regulation of epithelial to mesenchymal transition; canonical Wnt receptor signalling pathway involved in positive regulation of epithelial to mesenchymal transition; canonical Wnt-activated signaling pathway involved in positive regulation of epithelial to mesenchymal transition
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete canonical Wnt signaling pathway involved in neural crest cell differentiation (GO:0044335)
Namespace: biological_process
Definition: OBSOLETE. The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes involved in neural crest cell differentiation.
Synonyms: canonical Wnt receptor signaling pathway involved in neural crest cell differentiation; canonical Wnt receptor signalling pathway involved in neural crest cell differentiation; canonical Wnt-activated signaling pathway involved in neural crest cell differentiation
Comment: This term was obsoleted because it represents a GO-CAM model.
canonical Wnt signaling pathway involved in positive regulation of apoptotic process (GO:0044337)
Namespace: biological_process
Definition: The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes involved in the positive regulation of apoptotic process.
Synonyms: canonical Wnt receptor signaling pathway involved in positive regulation of apoptosis; canonical Wnt receptor signaling pathway involved in positive regulation of apoptotic process; canonical Wnt receptor signalling pathway involved in positive regulation of apoptosis; canonical Wnt-activated signaling pathway involved in positive regulation of apoptotic process
canonical Wnt signaling pathway involved in mesenchymal stem cell differentiation (GO:0044338)
Namespace: biological_process
Definition: The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes involved in mesenchymal stem cell differentiation.
Synonyms: canonical Wnt receptor signaling pathway involved in mesenchymal stem cell differentiation; canonical Wnt receptor signalling pathway involved in mesenchymal stem cell differentiation; canonical Wnt-activated signaling pathway involved in mesenchymal stem cell differentiation
obsolete canonical Wnt signaling pathway involved in osteoblast differentiation (GO:0044339)
Namespace: biological_process
Definition: OBSOLETE. The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes involved in osteoblast differentiation.
Synonyms: canonical Wnt receptor signaling pathway involved in osteoblast differentiation; canonical Wnt receptor signalling pathway involved in osteoblast differentiation; canonical Wnt-activated signaling pathway involved in osteoblast differentiation
Comment: This term was obsoleted because it represents a GO-CAM pathway.
obsolete canonical Wnt signaling pathway involved in regulation of cell proliferation (GO:0044340)
Namespace: biological_process
Definition: OBSOLETE. The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes that contributes to modulating the rate or frequency of cell proliferation.
Synonyms: canonical Wnt receptor signaling pathway involved in regulation of cell proliferation; canonical Wnt receptor signalling pathway involved in regulation of cell proliferation; canonical Wnt-activated signaling pathway involved in regulation of cell proliferation
Comment: This term was obsoleted because it represents a GO-CAM model.
sodium-dependent phosphate transport (GO:0044341)
Namespace: biological_process
Definition: The directed movement of phosphate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore, by a mechanism dependent upon sodium ions.
type B pancreatic cell proliferation (GO:0044342)
Namespace: biological_process
Definition: The multiplication or reproduction of pancreatic B cells, resulting in the expansion of an pancreatic B cell population. Pancreatic B cell are cells of the pancreas that secrete insulin.
Synonyms: pancreatic B cell proliferation; pancreatic beta cell proliferation
obsolete canonical Wnt signaling pathway involved in regulation of type B pancreatic cell proliferation (GO:0044343)
Namespace: biological_process
Definition: OBSOLETE. The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes that modulates the rate or frequency of pancreatic B cell proliferation. Pancreatic B cell are cells of the pancreas that secrete insulin.
Synonyms: canonical Wnt receptor signaling pathway involved in pancreatic beta cell proliferation; canonical Wnt receptor signaling pathway involved in regulation of pancreatic B cell proliferation; canonical Wnt receptor signaling pathway involved in regulation of type B pancreatic cell proliferation; canonical Wnt receptor signalling pathway involved in regulation of pancreatic B cell proliferation; canonical Wnt receptor signalling pathway involved in regulation of type B pancreatic cell proliferation; canonical Wnt-activated signaling pathway involved in regulation of type B pancreatic cell proliferation
Comment: This term was obsoleted because it represents a GO-CAM model.
cellular response to fibroblast growth factor stimulus (GO:0044344)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an fibroblast growth factor stimulus.
Synonyms: cellular response to FGF stimulus
stromal-epithelial cell signaling involved in prostate gland development (GO:0044345)
Namespace: biological_process
Definition: The process of transferring information from a stromal cell to an epithelial cell where it is received and interpreted, as part of prostate gland development.
Synonyms: stromal-epithelial cell signalling involved in prostate gland development
fibroblast apoptotic process (GO:0044346)
Namespace: biological_process
Definition: Any apoptotic process in a fibroblast, a connective tissue cell which secretes an extracellular matrix rich in collagen and other macromolecules.
Synonyms: fibroblast apoptosis
cell wall polysaccharide catabolic process (GO:0044347)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of cell wall polysaccharides.
Synonyms: cell wall polysaccharide breakdown
plant-type cell wall cellulose catabolic process (GO:0044348)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation, which forms part of the cell wall.
Synonyms: plant-type cell wall polysaccharide breakdown
obsolete DNA excision (GO:0044349)
Namespace: biological_process
Definition: OBSOLETE. The removal of a section of DNA from a larger DNA molecule by the making of dual incisions that flank the section to be excised.
Comment: The reason for obsoletion is that this term represents a molecular function.
micropinocytosis (GO:0044350)
Namespace: biological_process
Definition: An endocytosis process that results in the uptake of liquid material by cells from their external environment by invagination of the plasma membrane to form uncoated micropinosomes, differentiated from macropinosomes by their smaller size, on average 95 nm.
Synonyms: clathrin-independent pinocytosis; single-organism micropinocytosis
macropinocytosis (GO:0044351)
Namespace: biological_process
Definition: An endocytosis process that results in the uptake of liquid material by cells from their external environment by the 'ruffling' of the cell membrane to form heterogeneously sized intracellular vesicles called macropinosomes, which can be up to 5 micrometers in size.
Synonyms: clathrin-independent pinocytosis; single-organism macropinocytosis
pinosome (GO:0044352)
Namespace: cellular_component
Definition: A membrane-bounded, uncoated intracellular vesicle formed by the process of pinocytosis.
Synonyms: pinocytic vesicle
micropinosome (GO:0044353)
Namespace: cellular_component
Definition: A membrane-bounded, uncoated intracellular vesicle formed by the process of micropinocytosis.
clearance of foreign intracellular DNA (GO:0044355)
Namespace: biological_process
Definition: A defense process that protects an organism from invading foreign DNA.
Synonyms: clearance of foreign intracellular DNA by conversion of DNA cytidine to uridine
regulation of rRNA stability (GO:0044357)
Namespace: biological_process
Definition: Any process that modulates the propensity of rRNA molecules to degradation. Includes processes that both stabilize and destabilize rRNAs.
Synonyms: regulation of ribosomal RNA stability
venom-mediated hemorrhage (GO:0044358)
Namespace: biological_process
Definition: A process in which an organism causes vascular damage and hemorrhage in another organism via the action of a venom.
Synonyms: envenomation resulting in hemorrhagic damage in another organism; envenomation resulting in hemorrhagic damage to other organism; venom-mediated hemorrhagic damage in another organism
obsolete modulation of molecular function in another organism (GO:0044359)
Namespace: biological_process
Definition: OBSOLETE. The process in which an organism effects a change in the function of proteins in a second organism.
Synonyms: modulation of molecular function in other organism
Comment: This term was obsoleted because it represents a molecular function.
obsolete modulation of voltage-gated potassium channel activity in another organism (GO:0044360)
Namespace: biological_process
Definition: OBSOLETE. Any process in which an organism effects a change in the frequency, rate or extent of the activity of a voltage-gated potassium channel in another organism.
Synonyms: modulation of voltage-gated potassium channel activity in other organism
Comment: This term was obsoleted because it is too general.
obsolete negative regulation of molecular function in another organism (GO:0044362)
Namespace: biological_process
Definition: OBSOLETE. Any process in which an organism stops, prevents or reduces the frequency, rate or extent of the function of proteins in a second organism.
Synonyms: negative regulation of molecular function in other organism
Comment: This term was obsoleted because it represents a molecular function.
obsolete modulation of potassium channel activity in another organism (GO:0044363)
Namespace: biological_process
Definition: OBSOLETE. Any process in which an organism effects a change in the frequency, rate or extent of the activity of a potassium channel in another organism.
Synonyms: modulation of potassium channel activity in other organism
Comment: This term was obsoleted because it is too general.
obsolete disruption of cells of another organism (GO:0044364)
Namespace: biological_process
Definition: OBSOLETE. A process in which an organism has a negative effect on the functioning of the second organism's cells.
Synonyms: disruption of cells of other organism
Comment: This term was obsoleted because it was not specific enough.
obsolete envenomation resulting in modulation of platelet aggregation in another organism (GO:0044365)
Namespace: biological_process
Definition: OBSOLETE. A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with a resultant change to the frequency, rate or extent of platelet aggregation in the bitten organism.
Synonyms: envenomation resulting in modulation of platelet aggregation in other organism; envenomation resulting in regulation of platelet aggregation in other organism
Comment: This term was obsoleted because it is an unnecessary grouping term.
cytokinin binding (GO:0044373)
Namespace: molecular_function
Definition: Binding to a cytokinin, any of a class of adenine-derived compounds that can function in plants as growth regulators.
sequence-specific DNA binding, bending (GO:0044374)
Namespace: molecular_function
Definition: The activity of binding selectively and non-covalently to DNA in a sequence-specific manner and distorting the original structure of DNA, typically a straight helix, into a bend, or increasing the bend if the original structure was intrinsically bent due to its sequence.
Synonyms: DNA bending involving sequence-specific DNA binding
regulation of peroxisome size (GO:0044375)
Namespace: biological_process
Definition: Any process that modulates the volume of a peroxisome, a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules.
RNA polymerase II cis-regulatory region sequence-specific DNA binding, bending (GO:0044377)
Namespace: molecular_function
Definition: Binding to a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in cis relative to the transcription start site (i.e., on the same strand of DNA) of a gene transcribed by RNA polymerase II, and distorting the original structure of DNA, typically a straight helix, into a bend, or increasing the bend if the original structure was intrinsically bent due to its sequence.
Synonyms: RNA polymerase II core promoter proximal region sequence-specific DNA binding, bending; RNA polymerase II promoter proximal region sequence-specific DNA binding, bending; RNA polymerase II proximal promoter region sequence-specific DNA binding, bending; RNA polymerase II proximal promoter sequence-specific DNA binding, bending
non-sequence-specific DNA binding, bending (GO:0044378)
Namespace: molecular_function
Definition: The activity of binding selectively and non-covalently to DNA in a sequence-independent manner and distorting the original structure of DNA, typically a straight helix, into a bend, or increasing the bend if the original structure was intrinsically bent due to its sequence.
Synonyms: DNA bending involving non-sequence-specific DNA binding
protein localization to actin cortical patch (GO:0044379)
Namespace: biological_process
Definition: A process in which a protein is transported to, or maintained in, an actin cortical patch.
Synonyms: protein localisation to actin cortical patch
protein localization to cytoskeleton (GO:0044380)
Namespace: biological_process
Definition: A process in which a protein is transported to, or maintained in, a location within the cytoskeleton.
Synonyms: protein localisation to cytoskeleton
glucose import in response to insulin stimulus (GO:0044381)
Namespace: biological_process
Definition: The directed movement of the hexose monosaccharide glucose into a cell as a result of an insulin stimulus.
Synonyms: cellular glucose import in response to insulin stimulus