LiteFold/GO huggingface dataset:
obsolete regulation of histone H3-K27 trimethylation (GO:1902464)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of histone H3-K27 trimethylation.
Comment: This term was obsoleted because it represents a molecular function.
obsolete negative regulation of histone H3-K27 trimethylation (GO:1902465)
Namespace: biological_process
Definition: OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of histone H3-K27 trimethylation.
Synonyms: down regulation of histone H3-K27 trimethylation; down-regulation of histone H3-K27 trimethylation; downregulation of histone H3-K27 trimethylation; inhibition of histone H3-K27 trimethylation
Comment: This term was obsoleted because it represents a molecular function.
obsolete positive regulation of histone H3-K27 trimethylation (GO:1902466)
Namespace: biological_process
Definition: OBSOLETE. Any process that activates or increases the frequency, rate or extent of histone H3-K27 trimethylation.
Synonyms: activation of histone H3-K27 trimethylation; up regulation of histone H3-K27 trimethylation; up-regulation of histone H3-K27 trimethylation; upregulation of histone H3-K27 trimethylation
Comment: This term was obsoleted because it represents a molecular function.
obsolete regulation of mitotic actomyosin contractile ring localization (GO:1902471)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of mitotic actomyosin contractile ring localization.
Comment: The reason for obsoletion is that the term is represented in another branch (merge)
regulation of mitotic cytokinesis, division site positioning (GO:1902472)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of mitotic cytokinesis, division site positioning.
Synonyms: regulation of mitotic cytokinesis, site selection
regulation of protein localization to synapse (GO:1902473)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of protein localization to synapse.
Synonyms: regulation of protein localisation to synapse
positive regulation of protein localization to synapse (GO:1902474)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of protein localization to synapse.
Synonyms: activation of protein localisation to synapse; activation of protein localization to synapse; positive regulation of protein localisation to synapse; up regulation of protein localisation to synapse; up regulation of protein localization to synapse; up-regulation of protein localisation to synapse; up-regulation of protein localization to synapse; upregulation of protein localisation to synapse; upregulation of protein localization to synapse
L-alpha-amino acid transmembrane transport (GO:1902475)
Namespace: biological_process
Definition: The directed movement of L-alpha-amino acid across a membrane by means of some agent such as a transporter or a pore.
chloride transmembrane transport (GO:1902476)
Namespace: biological_process
Definition: The process in which chloride is transported across a membrane.
protein localization to mitotic spindle (GO:1902480)
Namespace: biological_process
Definition: A process in which a protein is transported to, or maintained in, a location within a mitotic spindle.
Synonyms: protein localisation in mitotic spindle; protein localisation to mitotic spindle; protein localization in mitotic spindle
gamma-tubulin complex assembly (GO:1902481)
Namespace: biological_process
Definition: The aggregation, arrangement and bonding together of a set of components to form a gamma-tubulin complex.
Synonyms: gamma-tubulin complex formation
regulatory T cell apoptotic process (GO:1902482)
Namespace: biological_process
Definition: Any apoptotic process in a regulatory T cell.
Synonyms: regulatory T cell apoptosis; regulatory T lymphocyte apoptosis; regulatory T lymphocyte apoptotic process; regulatory T-cell apoptosis; regulatory T-cell apoptotic process; regulatory T-lymphocyte apoptosis; regulatory T-lymphocyte apoptotic process
L-cysteine binding (GO:1902485)
Namespace: molecular_function
Definition: Binding to L-cysteine.
protein localization to non-growing cell tip (GO:1902487)
Namespace: biological_process
Definition: A process in which a protein is transported to, or maintained in, a location within a non-growing cell tip.
Synonyms: protein localisation in non-growing cell tip; protein localisation to non-growing cell tip; protein localization in non-growing cell tip
cholangiocyte apoptotic process (GO:1902488)
Namespace: biological_process
Definition: Any apoptotic process in a cholangiocyte.
Synonyms: cholangiocyte apoptosis; epithelial cell of bile duct apoptosis; epithelial cell of bile duct apoptotic process
regulation of sperm capacitation (GO:1902490)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of sperm capacitation.
Synonyms: regulation of sperm activation
negative regulation of sperm capacitation (GO:1902491)
Namespace: biological_process
Definition: Any process that stops, prevents or reduces the frequency, rate or extent of sperm capacitation.
Synonyms: down regulation of sperm activation; down regulation of sperm capacitation; down-regulation of sperm activation; down-regulation of sperm capacitation; downregulation of sperm activation; downregulation of sperm capacitation; inhibition of sperm activation; inhibition of sperm capacitation; negative regulation of sperm activation
positive regulation of sperm capacitation (GO:1902492)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of sperm capacitation.
Synonyms: activation of sperm activation; activation of sperm capacitation; positive regulation of sperm activation; up regulation of sperm activation; up regulation of sperm capacitation; up-regulation of sperm activation; up-regulation of sperm capacitation; upregulation of sperm activation; upregulation of sperm capacitation
acetyltransferase complex (GO:1902493)
Namespace: cellular_component
Definition: A protein complex which is capable of acetyltransferase activity.
catalytic complex (GO:1902494)
Namespace: cellular_component
Definition: A protein complex which is capable of catalytic activity.
Synonyms: enzyme complex
transmembrane transporter complex (GO:1902495)
Namespace: cellular_component
Definition: A transmembrane protein complex which enables the transfer of a substance from one side of a membrane to the other.
obsolete protein binding involved in negative regulation of telomere maintenance via telomerase (GO:1902496)
Namespace: molecular_function
Definition: OBSOLETE. Any protein binding that is involved in negative regulation of telomere maintenance via telomerase.
Synonyms: protein binding involved in down regulation of telomere maintenance via telomerase activity; protein binding involved in down-regulation of telomere maintenance via telomerase activity; protein binding involved in downregulation of telomere maintenance via telomerase activity; protein binding involved in inhibition of telomere maintenance via telomerase
Comment: The reason for obsoletion is that this should be captured as a GO-CAM model.
iron-sulfur cluster transmembrane transport (GO:1902497)
Namespace: biological_process
Definition: A process in which an iron-sulfur cluster is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
Synonyms: iron-sulfur cluster transport
regulation of protein autoubiquitination (GO:1902498)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of protein autoubiquitination.
Synonyms: regulation of protein auto-ubiquitination; regulation of protein auto-ubiquitinylation; regulation of protein autoubiquitinylation; regulation of protein self-ubiquitination; regulation of protein self-ubiquitinylation
positive regulation of protein autoubiquitination (GO:1902499)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of protein autoubiquitination.
Synonyms: activation of protein auto-ubiquitination; activation of protein auto-ubiquitinylation; activation of protein autoubiquitination; activation of protein autoubiquitinylation; activation of protein self-ubiquitination; activation of protein self-ubiquitinylation; positive regulation of protein auto-ubiquitination; positive regulation of protein auto-ubiquitinylation; positive regulation of protein autoubiquitinylation; positive regulation of protein self-ubiquitination; positive regulation of protein self-ubiquitinylation; up regulation of protein auto-ubiquitination; up regulation of protein auto-ubiquitinylation; up regulation of protein autoubiquitination; up regulation of protein autoubiquitinylation; up regulation of protein self-ubiquitination; up regulation of protein self-ubiquitinylation; up-regulation of protein auto-ubiquitination; up-regulation of protein auto-ubiquitinylation; up-regulation of protein autoubiquitination; up-regulation of protein autoubiquitinylation; up-regulation of protein self-ubiquitination; up-regulation of protein self-ubiquitinylation; upregulation of protein auto-ubiquitination; upregulation of protein auto-ubiquitinylation; upregulation of protein autoubiquitination; upregulation of protein autoubiquitinylation; upregulation of protein self-ubiquitination; upregulation of protein self-ubiquitinylation
vacuolar HOPS complex (GO:1902500)
Namespace: cellular_component
Definition: Any HOPS complex that is part of a vacuolar membrane.
Synonyms: vacuolar membrane HOPS complex
lysosomal HOPS complex (GO:1902501)
Namespace: cellular_component
Definition: Any HOPS complex that is part of a lysosomal membrane.
Synonyms: lysosomal membrane HOPS complex
multivesicular body HOPS complex (GO:1902502)
Namespace: cellular_component
Definition: Any HOPS complex that is part of a multivesicular body membrane.
Synonyms: multivesicular body membrane HOPS complex
adenylyltransferase complex (GO:1902503)
Namespace: cellular_component
Definition: A protein complex which is capable of adenylyltransferase activity.
Synonyms: ThiF-ThiS complex
thiazole synthase complex (GO:1902507)
Namespace: cellular_component
Definition: A protein complex which is capable of thiazole synthase activity.
2-iminoacetate synthase complex (GO:1902508)
Namespace: cellular_component
Definition: A protein complex which is capable of 2-iminoacetate synthase activity.
Synonyms: ThiH-ThiG complex
methionine-importing complex (GO:1902509)
Namespace: cellular_component
Definition: A protein complex which is capable of methionine-importing activity.
Synonyms: methionine importer complex; methionine importing complex
regulation of apoptotic DNA fragmentation (GO:1902510)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of apoptotic DNA fragmentation.
Synonyms: regulation of chromatinolysis; regulation of DNA catabolic process during apoptosis; regulation of DNA catabolism during apoptosis; regulation of DNA fragmentation; regulation of DNA fragmentation involved in apoptotic nuclear change; regulation of endonucleolytic DNA catabolic process involved in apoptosis
Comment: DNA fragmentation in response to apoptotic signals is achieved through the activity of apoptotic nucleases (see GO:0006309 'apoptotic DNA fragmentation'). Gene products involved in compartmentalization of such nucleases and in activation or repression of their enzymatic activity should be annotated to the regulation term GO:1902510 'regulation of apoptotic DNA fragmentation' or to one of its children (see PMID:15723341).
negative regulation of apoptotic DNA fragmentation (GO:1902511)
Namespace: biological_process
Definition: Any process that stops, prevents or reduces the frequency, rate or extent of apoptotic DNA fragmentation.
Synonyms: down regulation of apoptotic DNA fragmentation; down regulation of DNA catabolic process during apoptosis; down regulation of DNA catabolism during apoptosis; down regulation of DNA fragmentation involved in apoptotic nuclear change; down regulation of endonucleolytic DNA catabolic process involved in apoptosis; down-regulation of apoptotic DNA fragmentation; down-regulation of DNA catabolic process during apoptosis; down-regulation of DNA catabolism during apoptosis; down-regulation of DNA fragmentation involved in apoptotic nuclear change; down-regulation of endonucleolytic DNA catabolic process involved in apoptosis; downregulation of apoptotic DNA fragmentation; downregulation of DNA catabolic process during apoptosis; downregulation of DNA catabolism during apoptosis; downregulation of DNA fragmentation involved in apoptotic nuclear change; downregulation of endonucleolytic DNA catabolic process involved in apoptosis; inhibition of apoptotic DNA fragmentation; inhibition of DNA catabolic process during apoptosis; inhibition of DNA catabolism during apoptosis; inhibition of DNA fragmentation involved in apoptotic nuclear change; inhibition of endonucleolytic DNA catabolic process involved in apoptosis; negative regulation of DNA catabolic process during apoptosis; negative regulation of DNA catabolism during apoptosis; negative regulation of DNA fragmentation involved in apoptotic nuclear change; negative regulation of endonucleolytic DNA catabolic process involved in apoptosis
positive regulation of apoptotic DNA fragmentation (GO:1902512)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of apoptotic DNA fragmentation.
Synonyms: activation of apoptotic DNA fragmentation; activation of DNA catabolic process during apoptosis; activation of DNA catabolism during apoptosis; activation of DNA fragmentation involved in apoptotic nuclear change; activation of endonucleolytic DNA catabolic process involved in apoptosis; positive regulation of DNA catabolic process during apoptosis; positive regulation of DNA catabolism during apoptosis; positive regulation of DNA fragmentation involved in apoptotic nuclear change; positive regulation of endonucleolytic DNA catabolic process involved in apoptosis; up regulation of apoptotic DNA fragmentation; up regulation of DNA catabolic process during apoptosis; up regulation of DNA catabolism during apoptosis; up regulation of DNA fragmentation involved in apoptotic nuclear change; up regulation of endonucleolytic DNA catabolic process involved in apoptosis; up-regulation of apoptotic DNA fragmentation; up-regulation of DNA catabolic process during apoptosis; up-regulation of DNA catabolism during apoptosis; up-regulation of DNA fragmentation involved in apoptotic nuclear change; up-regulation of endonucleolytic DNA catabolic process involved in apoptosis; upregulation of apoptotic DNA fragmentation; upregulation of DNA catabolic process during apoptosis; upregulation of DNA catabolism during apoptosis; upregulation of DNA fragmentation involved in apoptotic nuclear change; upregulation of endonucleolytic DNA catabolic process involved in apoptosis
regulation of organelle transport along microtubule (GO:1902513)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of organelle transport along microtubule.
Synonyms: regulation of microtubule-based organelle localization
regulation of calcium ion transmembrane transport via high voltage-gated calcium channel (GO:1902514)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of generation of calcium ion transmembrane transport via high voltage-gated calcium channel.
Synonyms: regulation of generation of L-type calcium current
thioredoxin-disulfide reductase complex (GO:1902515)
Namespace: cellular_component
Definition: A protein complex which is capable of thioredoxin-disulfide reductase activity.
Comment: An example of this is thioredoxin reductase (TrxB) in E. coli [P0A9P4] in PMID:10947986.
glycerol-3-phosphate-transporting ATPase complex (GO:1902517)
Namespace: cellular_component
Definition: A protein complex which is capable of glycerol-3-phosphate-transporting ATPase activity.
Comment: An example of this is UgpB in E. coli in PMID:23013274.
response to cyclophosphamide (GO:1902518)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cyclophosphamide stimulus.
Comment: Note that this term is in the subset of terms that should not be used for direct manual annotation of gene products. It was created to be used for cross-referencing by other ontologies. Direct annotations to this term may be amended during annotation QC.
response to docetaxel trihydrate (GO:1902519)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a docetaxel trihydrate stimulus.
Synonyms: response to docetaxel
Comment: Note that this term is in the subset of terms that should not be used for direct manual annotation of gene products. It was created to be used for cross-referencing by other ontologies. Direct annotations to this term may be amended during annotation QC.
response to doxorubicin (GO:1902520)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a doxorubicin stimulus.
Comment: Note that this term is in the subset of terms that should not be used for direct manual annotation of gene products. It was created to be used for cross-referencing by other ontologies. Direct annotations to this term may be amended during annotation QC.
response to etoposide (GO:1902521)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an etoposide stimulus.
Comment: Note that this term is in the subset of terms that should not be used for direct manual annotation of gene products. It was created to be used for cross-referencing by other ontologies. Direct annotations to this term may be amended during annotation QC.
response to 4'-epidoxorubicin (GO:1902522)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a 4'-epidoxorubicin stimulus.
Synonyms: response to epirubicin
Comment: Note that this term is in the subset of terms that should not be used for direct manual annotation of gene products. It was created to be used for cross-referencing by other ontologies. Direct annotations to this term may be amended during annotation QC.
positive regulation of protein K63-linked ubiquitination (GO:1902523)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of protein K63-linked ubiquitination.
Synonyms: activation of protein K63-linked polyubiquitination; activation of protein K63-linked ubiquitination; positive regulation of protein K63-linked polyubiquitination; up regulation of protein K63-linked polyubiquitination; up regulation of protein K63-linked ubiquitination; up-regulation of protein K63-linked polyubiquitination; up-regulation of protein K63-linked ubiquitination; upregulation of protein K63-linked polyubiquitination; upregulation of protein K63-linked ubiquitination
Comment: An example is BIRC2 (UniProt ID Q13490) in PMID:21931591.
positive regulation of protein K48-linked ubiquitination (GO:1902524)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of protein K48-linked ubiquitination.
Synonyms: activation of protein K48-linked polyubiquitination; activation of protein K48-linked ubiquitination; positive regulation of protein K48-linked polyubiquitination; up regulation of protein K48-linked polyubiquitination; up regulation of protein K48-linked ubiquitination; up-regulation of protein K48-linked polyubiquitination; up-regulation of protein K48-linked ubiquitination; upregulation of protein K48-linked polyubiquitination; upregulation of protein K48-linked ubiquitination
Comment: An example is BIRC2 (UniProt ID Q13490) in PMID:21931591.
negative regulation of protein monoubiquitination (GO:1902526)
Namespace: biological_process
Definition: Any process that stops, prevents or reduces the frequency, rate or extent of protein monoubiquitination.
Synonyms: down regulation of protein monoubiquitination; down regulation of protein monoubiquitinylation; down regulation of protein monoubiquitylation; down-regulation of protein monoubiquitination; down-regulation of protein monoubiquitinylation; down-regulation of protein monoubiquitylation; downregulation of protein monoubiquitination; downregulation of protein monoubiquitinylation; downregulation of protein monoubiquitylation; inhibition of protein monoubiquitination; inhibition of protein monoubiquitinylation; inhibition of protein monoubiquitylation; negative regulation of protein monoubiquitinylation; negative regulation of protein monoubiquitylation
regulation of protein linear polyubiquitination (GO:1902528)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of protein linear polyubiquitination.
Synonyms: regulation of M1 linkage
negative regulation of protein linear polyubiquitination (GO:1902529)
Namespace: biological_process
Definition: Any process that stops, prevents or reduces the frequency, rate or extent of protein linear polyubiquitination.
Synonyms: down regulation of M1 linkage; down regulation of protein linear polyubiquitination; down-regulation of M1 linkage; down-regulation of protein linear polyubiquitination; downregulation of M1 linkage; downregulation of protein linear polyubiquitination; inhibition of M1 linkage; inhibition of protein linear polyubiquitination; negative regulation of M1 linkage
positive regulation of protein linear polyubiquitination (GO:1902530)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of protein linear polyubiquitination.
Synonyms: activation of M1 linkage; activation of protein linear polyubiquitination; positive regulation of M1 linkage; up regulation of M1 linkage; up regulation of protein linear polyubiquitination; up-regulation of M1 linkage; up-regulation of protein linear polyubiquitination; upregulation of M1 linkage; upregulation of protein linear polyubiquitination
Comment: An example is BIRC2 (UniProt ID Q13490) in PMID:21931591.
regulation of intracellular signal transduction (GO:1902531)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of intracellular signal transduction.
Synonyms: regulation of intracellular protein kinase cascade; regulation of intracellular signal transduction pathway; regulation of intracellular signaling cascade; regulation of intracellular signaling chain; regulation of intracellular signaling pathway; regulation of signal transduction via intracellular signaling cascade; regulation of signal transmission via intracellular cascade