LiteFold/GO huggingface dataset:
phenol-containing compound metabolic process (GO:0018958)
Namespace: biological_process
Definition: The chemical reactions and pathways involving a phenol, any compound containing one or more hydroxyl groups directly attached to an aromatic carbon ring.
Synonyms: carbolic acid metabolic process; carbolic acid metabolism; hydroxybenzene metabolic process; hydroxybenzene metabolism; phenol-containing compound metabolism
Comment: Note that phenol metabolism is not included as a child of 'xenobiotic metabolism' because although it is synthesized industrially, phenol is also found naturally in animal wastes and other organic materials. It is often formed by the activity of microorganisms, which can chemically modify a variety of xenobiotic and naturally occurring phenolic compounds.
obsolete aerobic phenol-containing compound metabolic process (GO:0018959)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving a phenol, any compound containing one or more hydroxyl groups directly attached to an aromatic carbon ring, in the presence of oxygen.
Synonyms: aerobic phenol-containing compound metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
obsolete pentachlorophenol metabolic process (GO:0018961)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving pentachlorophenol, a chlorinated insecticide and fungicide used primarily to protect timber from fungal rot and wood boring insects. Pentachlorophenol is significantly toxic to mammals, plants, and many microorganisms.
Synonyms: PCP metabolic process; PCP metabolism; pentachlorophenol metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
obsolete 3-phenylpropionate metabolic process (GO:0018962)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving 3-phenylpropionate, the anion of phenylpropanoic acid. It is produced from putrefaction of proteins in soil or breakdown of several constituents of plants, such as lignin, various oils and resins.
Synonyms: 3-phenylpropionate metabolism; hydrocinnamic acid metabolic process; hydrocinnamic acid metabolism; phenylpropanoate metabolic process; phenylpropanoate metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
propylene metabolic process (GO:0018964)
Namespace: biological_process
Definition: The chemical reactions and pathways involving propylene, an alkene produced by catalytic or thermal cracking of hydrocarbons or as a by-product of petroleum refining. It is used mainly in the preparation of alkylates for gasoline and in the production of polypropylene, acrylonitrile, propylene oxide and a number of other industrial chemicals.
Synonyms: propylene metabolism
obsolete s-triazine compound metabolic process (GO:0018965)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving any s-triazine compound. These compounds include many pesticides of widespread use in agriculture, and are characterized by a symmetrical hexameric ring consisting of alternating carbon and nitrogen atoms.
Synonyms: s-triazine compound metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
styrene metabolic process (GO:0018966)
Namespace: biological_process
Definition: The chemical reactions and pathways involving styrene, an aromatic hydrocarbon liquid soluble in ether and alcohol. When heated, exposed to light or added to a peroxide catalyst, it undergoes polymerization to form polystyrene, a versatile material used in the manufacture of plastics, synthetic rubber, thermal insulation, and packaging. Styrene is a classified mutagen and a suspected carcinogen.
Synonyms: styrene metabolism
obsolete tetrachloroethylene metabolic process (GO:0018967)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving tetrachloroethylene (tetrachloroethene), a derivative of ethene with the hydrogen atoms replaced by chlorines. Tetrachloroethene has been used primarily as a solvent in dry-cleaning industries and to a lesser extent as a degreasing solvent.
Synonyms: tetrachloroethene metabolic process; tetrachloroethene metabolism; tetrachloroethylene metabolism
Comment: The reason for obsoletion is that this term is an unnecessary grouping term. The chemical is not naturally made by any organism.
tetrahydrofuran catabolic process (GO:0018968)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of tetrahydrofuran, a cyclic 4 carbon ether. It is one of the most polar ethers and is a widely used solvent for polar reagents. Since THF is very soluble in water and has a relatively low boiling point, significant amounts are often released into the environment, causing contamination problems.
Synonyms: tetrahydrofuran metabolic process; tetrahydrofuran metabolism; THF metabolic process; THF metabolism
thiocyanate metabolic process (GO:0018969)
Namespace: biological_process
Definition: The chemical reactions and pathways involving thiocyanate, the anion of thiocyanic acid, a toxic cyanide derivative commonly formed as a by-product in the production of gas for fuel, coke, and substances for chemical industries.
Synonyms: thiocyanate metabolism; thiocyanic acid metabolic process; thiocyanic acid metabolism
toluene metabolic process (GO:0018970)
Namespace: biological_process
Definition: The chemical reactions and pathways involving toluene, a volatile monoaromatic hydrocarbon found in crude petroleum and petroleum products such as gasoline and commonly used as a paint thinning agent and in other solvent applications.
Synonyms: methylbenzene metabolic process; methylbenzene metabolism; toluene metabolism
obsolete anaerobic toluene metabolic process (GO:0018971)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving toluene, a volatile monoaromatic hydrocarbon found in crude petroleum and petroleum products, that occur in the absence of oxygen.
Synonyms: anaerobic toluene metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
obsolete toluene-4-sulfonate metabolic process (GO:0018972)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving toluene-4-sulfonate, the anion of 4-toluene sulfonic acid, a white crystalline solid which is highly hygroscopic and soluble in water.
Synonyms: 4-methylbenzenesulfonate metabolic process; 4-methylbenzenesulfonate metabolism; 4-toluenesulfonate metabolic process; 4-toluenesulfonate metabolism; toluene-4-sulfonate metabolism; toluene-4-sulphonate metabolic process; toluene-4-sulphonate metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
obsolete trinitrotoluene metabolic process (GO:0018973)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving trinitrotoluene, a methylated benzene molecule with three NO2 groups attached to it. This includes the explosive TNT, 1-methyl-2,4,6-trinitrobenzene.
Synonyms: trinitrotoluene metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
obsolete anaerobic 2,4,6-trinitrotoluene metabolic process (GO:0018975)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving 2,4,6-trinitrotoluene, 1-methyl-2,4,6-trinitrobenzene, a highly explosive pale yellow crystalline solid, that occur in the absence of oxygen.
Synonyms: anaerobic 2,4,6-trinitrotoluene metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
1,2,3-tribromopropane metabolic process (GO:0018976)
Namespace: biological_process
Definition: The chemical reactions and pathways involving 1,2,3-tribromopropane, a toxic and volatile organic compound commonly used as a nematocide in agriculture.
Synonyms: 1,2,3-tribromopropane metabolism
anaerobic 1,1,1-trichloro-2,2-bis-(4-chlorophenyl)ethane metabolic process (GO:0018978)
Namespace: biological_process
Definition: The chemical reactions and pathways involving 1,1,1-trichloro-2,2-bis-(4-chlorophenyl)ethane (DDT), a chlorinated, broad spectrum, contact insecticide, in the absence of oxygen.
Synonyms: anaerobic 1,1,1-trichloro-2,2-bis-(4-chlorophenyl)ethane metabolism; anaerobic DDT metabolic process; anaerobic DDT metabolism
trichloroethylene metabolic process (GO:0018979)
Namespace: biological_process
Definition: The chemical reactions and pathways involving trichloroethylene, a toxic, colorless, photoreactive, chlorinated hydrocarbon liquid, commonly used as a metal degreaser and solvent.
Synonyms: TCE metabolic process; TCE metabolism; trichloroethene metabolic process; trichloroethene metabolism; trichloroethylene metabolism
obsolete 2,4,5-trichlorophenoxyacetic acid metabolic process (GO:0018980)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving 2,4,5-trichlorophenoxyacetic acid, a chlorinated aromatic compound which is widely used as a herbicide, often as a weed killer for home lawns.
Synonyms: 2,4,5-T metabolic process; 2,4,5-T metabolism; 2,4,5-trichlorophenoxyacetic acid metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
obsolete triethanolamine metabolic process (GO:0018981)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving triethanolamine, a combustible, hygroscopic, colorless liquid commonly used in dry-cleaning solutions, cosmetics, detergents, textile processing, wool scouring, and as a corrosion inhibitor and pharmaceutical alkalizing agent.
Synonyms: triethanolamine metabolism
Comment: Triethanolamine is not a natural compound.
vanillin metabolic process (GO:0018982)
Namespace: biological_process
Definition: The chemical reactions and pathways involving vanillin, an aromatic hydrocarbon which occurs naturally in black vanilla bean pods and can be obtained as a by-product of the pulp and paper industry by the oxidative breakdown of lignin.
Synonyms: vanillic aldehyde metabolic process; vanillic aldehyde metabolism; vanillin metabolism
obsolete Z-phenylacetaldoxime metabolic process (GO:0018983)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving Z-phenylacetaldoxime, a member of the glucosinolate group of compounds, a class of natural products that are gaining increasing interest as cancer-preventing agents and crop protectants.
Synonyms: Z-phenylacetaldoxime metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
naphthalenesulfonate metabolic process (GO:0018984)
Namespace: biological_process
Definition: The chemical reactions and pathways involving naphthalenesulfonate, sulfonated derivatives of naphthalene.
Synonyms: naphthalenesulfonate metabolism; naphthalenesulphonate metabolic process; naphthalenesulphonate metabolism
pronuclear envelope synthesis (GO:0018985)
Namespace: biological_process
Definition: Synthesis and ordering of the envelope of pronuclei.
apolysis (GO:0018989)
Namespace: biological_process
Definition: The first process of molting, characterized by the detachment of the old cuticle from the underlying epidermal cells.
ecdysis, chitin-based cuticle (GO:0018990)
Namespace: biological_process
Definition: The shedding of the old chitin-based cuticlar fragments during the molting cycle. An example of this is found in Drosophila melanogaster.
egg-laying behavior (GO:0018991)
Namespace: biological_process
Definition: A reproductive behavior that results in the deposition of eggs (either fertilized or not) upon a surface or into a medium such as water.
Synonyms: egg laying; egg-laying; oviposition; post-mating oviposition
germ-line sex determination (GO:0018992)
Namespace: biological_process
Definition: The determination of sex and sexual phenotype in an organism's germ line.
somatic sex determination (GO:0018993)
Namespace: biological_process
Definition: The determination of sex and sexual phenotypes in an organism's soma.
host cellular component (GO:0018995)
Namespace: cellular_component
Definition: Any cellular component of a host cell. The host is an organism in which another organism, for instance a parasite or symbiont, spends part or all of its life cycle and from which it obtains nourishment and/or protection.
Synonyms: host organism
molting cycle, collagen and cuticulin-based cuticle (GO:0018996)
Namespace: biological_process
Definition: The periodic shedding of part or all of a collagen and cuticulin-based cuticle, which is then replaced by a new collagen and cuticulin-based cuticle. An example of this is found in the Nematode worm, Caenorhabditis elegans.
Synonyms: collagen and cuticulin-based cuticle molting cycle
obsolete electron transfer carrier (GO:0018997)
Namespace: molecular_function
Definition: OBSOLETE. (Was not defined before being made obsolete).
Synonyms: electron transfer carrier
Comment: This term was made obsolete because the parent terms cover its function.
obsolete metaxin (GO:0018998)
Namespace: cellular_component
Definition: OBSOLETE. (Was not defined before being made obsolete).
Synonyms: metaxin
Comment: This term was made obsolete because it represents a single gene product and not a complex.
obsolete endonuclease G activity (GO:0019000)
Namespace: molecular_function
Definition: OBSOLETE. (Was not defined before being made obsolete).
Synonyms: endonuclease G activity
Comment: This term was made obsolete because it represents a gene product.
guanyl nucleotide binding (GO:0019001)
Namespace: molecular_function
Definition: Binding to a guanyl nucleotide, consisting of guanosine esterified with (ortho)phosphate.
GMP binding (GO:0019002)
Namespace: molecular_function
Definition: Binding to GMP, guanosine monophosphate.
GDP binding (GO:0019003)
Namespace: molecular_function
Definition: Binding to GDP, guanosine 5'-diphosphate.
SCF ubiquitin ligase complex (GO:0019005)
Namespace: cellular_component
Definition: A ubiquitin ligase complex in which a cullin from the Cul1 subfamily and a RING domain protein form the catalytic core; substrate specificity is conferred by a Skp1 adaptor and an F-box protein. SCF complexes are involved in targeting proteins for degradation by the proteasome. The best characterized complexes are those from yeast and mammals (with core subunits named Cdc53/Cul1, Rbx1/Hrt1/Roc1).
Synonyms: CDL1 complex; CRL1 complex; Cul1-RING ubiquitin ligase complex; cullin-RING ligase 1; SCF complex; SCF complex substrate recognition subunit; Skp1/Cul1/F-box protein complex
obsolete molybdopterin synthase complex (GO:0019008)
Namespace: cellular_component
Definition: OBSOLETE. A protein complex that possesses molybdopterin synthase activity. In E. coli, the complex is a heterotetramer consisting of two MoaD and two MoaE subunits.
Synonyms: molybdopterin converting factor complex
Comment: The reason for obsoletion is that this term is equivalent to GO:1990140 MPT synthase complex.
farnesoic acid O-methyltransferase activity (GO:0019010)
Namespace: molecular_function
Definition: Catalysis of the reaction: (2E,6E)-farnesoate + S-adenosyl-L-methionine = methyl (2E,6E)-farnesoate + S-adenosyl-L-homocysteine. Also converts juvenile hormone III carboxylate into juvenile hormone-III.
Synonyms: juvenile hormone acid methyltransferase activity; juvenile hormone-III synthase activity; S-adenosyl-methionine:farnesoic acid O-methyltransferase activity
obsolete DNA replication accessory factor (GO:0019011)
Namespace: molecular_function
Definition: OBSOLETE. (Was not defined before being made obsolete).
Synonyms: DNA replication accessory factor
Comment: This term was made obsolete because it does not represent a true molecular function.
viral nucleocapsid (GO:0019013)
Namespace: cellular_component
Definition: The complete protein-nucleic acid complex that is the packaged form of the genome in a virus particle.
Synonyms: core; nucleocapsid
obsolete viral genome (GO:0019015)
Namespace: cellular_component
Definition: OBSOLETE. The whole of the genetic information of a virus, contained as either DNA or RNA.
Comment: This term was obsoleted because it does not represent a GO cellular component.
obsolete non-segmented viral genome (GO:0019016)
Namespace: cellular_component
Definition: OBSOLETE. A viral genome that consists of one continuous nucleic acid molecule.
Comment: This term was obsoleted because it does not represent a GO cellular component.
obsolete segmented viral genome (GO:0019017)
Namespace: cellular_component
Definition: OBSOLETE. A viral genome that is divided into two or more physically separate molecules of nucleic acid and packaged into a single virion.
Comment: This term was obsoleted because it does not represent a GO cellular component.
obsolete bipartite viral genome (GO:0019018)
Namespace: cellular_component
Definition: OBSOLETE. A segmented viral genome consisting of two sub-genomic nucleic acids but each nucleic acid is packaged into a different virion.
Comment: This term was obsoleted because it does not represent a GO cellular component.
obsolete tripartite viral genome (GO:0019019)
Namespace: cellular_component
Definition: OBSOLETE. A segmented viral genome consisting of three sub-genomic nucleic acids but each nucleic acid is packaged into a different virion.
Comment: This term was obsoleted because it does not represent a GO cellular component.
obsolete DNA viral genome (GO:0019021)
Namespace: cellular_component
Definition: OBSOLETE. A viral genome composed of deoxyribonucleic acid.
Comment: This term was obsoleted because it does not represent a GO cellular component.
obsolete RNA viral genome (GO:0019022)
Namespace: cellular_component
Definition: OBSOLETE. A viral genome composed of ribonucleic acid. This results in genome replication and expression of genetic information being inextricably linked.
Comment: This term was obsoleted because it does not represent a GO cellular component.
obsolete dsRNA viral genome (GO:0019023)
Namespace: cellular_component
Definition: OBSOLETE. A viral genome composed of double stranded RNA.
Comment: This term was obsoleted because it does not represent a GO cellular component.
obsolete ssRNA viral genome (GO:0019024)
Namespace: cellular_component
Definition: OBSOLETE. A viral genome composed of single stranded RNA of either positive or negative sense.
Comment: This term was obsoleted because it does not represent a GO cellular component.
obsolete positive sense viral genome (GO:0019025)
Namespace: cellular_component
Definition: OBSOLETE. A single stranded RNA genome with the same nucleotide polarity as mRNA.
Comment: This term was obsoleted because it does not represent a GO cellular component.
obsolete negative sense viral genome (GO:0019026)
Namespace: cellular_component
Definition: OBSOLETE. A single stranded RNA genome with the opposite nucleotide polarity as mRNA.
Comment: This term was obsoleted because it does not represent a GO cellular component.
obsolete ambisense viral genome (GO:0019027)
Namespace: cellular_component
Definition: OBSOLETE. A RNA genome that contains coding regions that are either positive sense or negative sense on the same RNA molecule.
Comment: This term was obsoleted because it does not represent a GO cellular component.
viral capsid (GO:0019028)
Namespace: cellular_component
Definition: The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
helical viral capsid (GO:0019029)
Namespace: cellular_component
Definition: The protein coat that surrounds the infective nucleic acid in some virus particles; the subunits are arranged to form a protein helix with the genetic material contained within. Tobacco mosaic virus has such a capsid structure.
icosahedral viral capsid (GO:0019030)
Namespace: cellular_component
Definition: The protein coat that surrounds the infective nucleic acid in some virus particles; the subunits are arranged to form an icosahedron, a solid with 20 faces and 12 vertices. Icosahedral capsids have 12 pentamers plus 10(T-1) hexamers, where T is the triangulation number. Tobacco satellite necrosis virus has such a capsid structure.
Synonyms: quasispherical viral capsid
viral envelope (GO:0019031)
Namespace: cellular_component
Definition: The lipid bilayer of a virion that surrounds the protein capsid. May also contain glycoproteins.
Synonyms: viral glycoprotein; viral outside membrane
obsolete viral glycoprotein (GO:0019032)
Namespace: cellular_component
Definition: OBSOLETE. (Was not defined before being made obsolete).
Synonyms: viral glycoprotein
Comment: This term was made obsolete because it represents a type of gene product and not a location or complex.
viral tegument (GO:0019033)
Namespace: cellular_component
Definition: A structure lying between the capsid and envelope of a virus, varying in thickness and often distributed asymmetrically.
viral replication complex (GO:0019034)
Namespace: cellular_component
Definition: Specific locations and structures in the virus infected cell involved in replicating the viral genome.
viral integration complex (GO:0019035)
Namespace: cellular_component
Definition: A nucleoprotein complex containing viral genetic material and the viral integrase, required for genome integration into the host's genome. May contain other proteins.
Synonyms: PIC; pre-integration complex
viral transcriptional complex (GO:0019036)
Namespace: cellular_component
Definition: Specific locations and structures in the virus infected cell involved in transcribing the viral genome.
obsolete viral assembly intermediate (GO:0019037)
Namespace: cellular_component
Definition: OBSOLETE. Specific locations and structures in the virus infected cell involved in assembling new virions.
Comment: This term was obsoleted because the concept it represented was too vague.
obsolete viral-cell fusion molecule activity (GO:0019039)
Namespace: molecular_function
Definition: OBSOLETE. (Was not defined before being made obsolete).
Synonyms: viral-cell fusion molecule activity
Comment: This term was made obsolete because it represents a gene product.
obsolete viral host shutoff protein (GO:0019040)
Namespace: molecular_function
Definition: OBSOLETE. (Was not defined before being made obsolete).
Synonyms: viral host shutoff protein
Comment: This term was made obsolete because it does not represent a molecular function.
viral latency (GO:0019042)
Namespace: biological_process
Definition: The process by which, after initial infection, a virus lies dormant within a cell and viral production ceases. The process ends when the virus switches from latency and starts to replicate.
Synonyms: latent virus infection; phage lysogeny; viral dormancy
establishment of viral latency (GO:0019043)
Namespace: biological_process
Definition: A process by which a virus establishes a latent state within its host, either as an integrated provirus within the host genome or as an episome, where viral genome remains in the cytoplasm or nucleus as distinct objects.
Synonyms: lysogenic commitment; phage lysogeny
maintenance of viral latency (GO:0019044)
Namespace: biological_process
Definition: The perpetuation of a latent state, generally by repressing the viruses own lytic genes expression and ensuring expression of viral genes which function to keep the viral genome from being detected by the host defense mechanisms.
Synonyms: latent virus maintenance; prophage maintenance; provirus maintenance
release from viral latency (GO:0019046)
Namespace: biological_process
Definition: The process by which a virus begins to replicate following a latency replication decision (switch).
obsolete modulation by virus of host process (GO:0019048)
Namespace: biological_process
Definition: OBSOLETE. The process in which a virus effects a change in the structure or processes of its host organism.
Synonyms: disruption by virus of host cell; host-virus interaction; modulation by virus of host anatomical structure or process; modulation by virus of host anatomy or process; modulation by virus of host morphology or physiology; viral interaction with host; viral-host process; virus-host interaction; virus-host process
Comment: This term has been replaced by the more general symbiont-mediated perturbation of host process ; GO:0044003.