LiteFold/GO huggingface dataset:
mannosyl-oligosaccharide mannosidase activity (GO:0015924)
Namespace: molecular_function
Definition: Catalysis of the hydrolysis of the terminal alpha-D-mannose residues in oligo-mannose oligosaccharides.
galactosidase activity (GO:0015925)
Namespace: molecular_function
Definition: Catalysis of the hydrolysis of galactosyl compounds, substances containing a group derived from a cyclic form of galactose or a galactose derivative.
glucosidase activity (GO:0015926)
Namespace: molecular_function
Definition: Catalysis of the hydrolysis of glucosyl compounds, substances containing a group derived from a cyclic form of glucose or a glucose derivative.
trehalase activity (GO:0015927)
Namespace: molecular_function
Definition: Catalysis of the hydrolysis of trehalose or a trehalose derivative.
glutamate synthase activity (GO:0015930)
Namespace: molecular_function
Definition: Catalysis of the formation of L-glutamine and 2-oxoglutarate from L-glutamate, using NADH, NADPH or ferredoxin as hydrogen acceptors.
nucleobase-containing compound transport (GO:0015931)
Namespace: biological_process
Definition: The directed movement of nucleobases, nucleosides, nucleotides and nucleic acids, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
Synonyms: nucleobase, nucleoside, nucleotide and nucleic acid transport
nucleobase-containing compound transmembrane transporter activity (GO:0015932)
Namespace: molecular_function
Definition: Enables the transfer of nucleobases, nucleosides, nucleotides and nucleic acids from one side of a membrane to the other.
Synonyms: nucleobase, nucleoside, nucleotide and nucleic acid transmembrane transporter activity
obsolete flavin-containing electron transporter (GO:0015933)
Namespace: molecular_function
Definition: OBSOLETE. An oxidoreductase which contains either flavin-adenine dinucleotide or flavin mononucleotide as a prosthetic group, utilizes either NADH or NADPH and transfers electrons to other electron transfer proteins.
Synonyms: flavin-containing electron transporter
Comment: This term was made obsolete because it does not describe a molecular function.
large ribosomal subunit (GO:0015934)
Namespace: cellular_component
Definition: The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site).
Synonyms: ribosomal large subunit
small ribosomal subunit (GO:0015935)
Namespace: cellular_component
Definition: The smaller of the two subunits of a ribosome.
Synonyms: ribosomal small subunit
coenzyme A metabolic process (GO:0015936)
Namespace: biological_process
Definition: The chemical reactions and pathways involving coenzyme A, 3'-phosphoadenosine-(5')diphospho(4')pantatheine, an acyl carrier in many acylation and acyl-transfer reactions in which the intermediate is a thiol ester.
Synonyms: CoA metabolism; coenzyme A metabolism
coenzyme A biosynthetic process (GO:0015937)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of coenzyme A, 3'-phosphoadenosine-(5')diphospho(4')pantatheine, an acyl carrier in many acylation and acyl-transfer reactions in which the intermediate is a thiol ester.
Synonyms: CoA biosynthesis; coenzyme A anabolism; coenzyme A biosynthesis; coenzyme A formation; coenzyme A synthesis
coenzyme A catabolic process (GO:0015938)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of coenzyme A, 3'-phosphoadenosine-(5')diphospho(4')pantatheine, an acyl carrier in many acylation and acyl-transfer reactions in which the intermediate is a thiol ester.
Synonyms: CoA catabolism; coenzyme A breakdown; coenzyme A catabolism; coenzyme A degradation
pantothenate metabolic process (GO:0015939)
Namespace: biological_process
Definition: The chemical reactions and pathways involving pantothenate, the anion of pantothenic acid, the amide of beta-alanine and pantoic acid. It is a B complex vitamin that is a constituent of coenzyme A and is distributed ubiquitously in foods.
Synonyms: pantothenate metabolism; vitamin B5 metabolic process; vitamin B5 metabolism
pantothenate biosynthetic process (GO:0015940)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of pantothenate, the anion of pantothenic acid. It is a B complex vitamin that is a constituent of coenzyme A and is distributed ubiquitously in foods.
Synonyms: pantothenate anabolism; pantothenate anabolism from 2-oxypantoyl lactone; pantothenate anabolism from valine; pantothenate biosynthesis; pantothenate biosynthesis from 2-oxypantoyl lactone; pantothenate biosynthesis from valine; pantothenate biosynthetic process from 2-dehydropantolactone; pantothenate biosynthetic process from 2-oxypantoyl lactone; pantothenate biosynthetic process from valine; pantothenate formation; pantothenate formation from 2-oxypantoyl lactone; pantothenate formation from valine; pantothenate synthesis; pantothenate synthesis from 2-oxypantoyl lactone; pantothenate synthesis from valine; vitamin B5 biosynthesis; vitamin B5 biosynthetic process
pantothenate catabolic process (GO:0015941)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of pantothenate, the anion of pantothenic acid. It is a B complex vitamin that is a constituent of coenzyme A and is distributed ubiquitously in foods.
Synonyms: pantothenate breakdown; pantothenate catabolism; pantothenate degradation; vitamin B5 catabolic process; vitamin B5 catabolism
formate metabolic process (GO:0015942)
Namespace: biological_process
Definition: The chemical reactions and pathways involving formate, also known as methanoate, the anion HCOO- derived from methanoic (formic) acid.
Synonyms: formate metabolism
formate biosynthetic process (GO:0015943)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of formate, also known as methanoate, the anion HCOO- derived from methanoic (formic) acid.
Synonyms: formate anabolism; formate biosynthesis; formate formation; formate synthesis; formic acid biosynthesis; formic acid biosynthetic process
formate oxidation (GO:0015944)
Namespace: biological_process
Definition: The chemical reactions and pathways by which formate is converted to CO2.
Synonyms: formic acid oxidation
methanol metabolic process (GO:0015945)
Namespace: biological_process
Definition: The chemical reactions and pathways involving methanol, CH3-OH, a colorless, flammable, mobile, poisonous liquid, widely used as a solvent.
Synonyms: methanol metabolism
methanol oxidation (GO:0015946)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the conversion of methanol to methyl-Coenzyme M.
methane metabolic process (GO:0015947)
Namespace: biological_process
Definition: The chemical reactions and pathways involving methane, a colorless, odorless, flammable gas with the formula CH4. It is the simplest of the alkanes.
Synonyms: methane metabolism
methanogenesis (GO:0015948)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of methane, a colorless, odorless, flammable gas with the formula CH4. It is the simplest of the alkanes.
Synonyms: methane biosynthesis; methane biosynthetic process
nucleobase-containing small molecule interconversion (GO:0015949)
Namespace: biological_process
Definition: The chemical reactions and pathways by which a nucleobase, nucleoside or nucleotide small molecule is synthesized from another nucleobase, nucleoside or nucleotide small molecule.
purine nucleotide interconversion (GO:0015950)
Namespace: biological_process
Definition: The chemical reactions and pathways by which a purine nucleotide is synthesized from another purine nucleotide.
purine ribonucleotide interconversion (GO:0015951)
Namespace: biological_process
Definition: The chemical reactions and pathways by which a purine ribonucleotide is synthesized from another purine ribonucleotide.
purine deoxyribonucleotide interconversion (GO:0015952)
Namespace: biological_process
Definition: The chemical reactions and pathways by which a purine deoxyribonucleotide is synthesized from another purine deoxyribonucleotide.
pyrimidine nucleotide interconversion (GO:0015953)
Namespace: biological_process
Definition: The chemical reactions and pathways by which a pyrimidine nucleotide is synthesized from another pyrimidine nucleotide.
pyrimidine ribonucleotide interconversion (GO:0015954)
Namespace: biological_process
Definition: The chemical reactions and pathways by which a pyrimidine ribonucleotide is synthesized from another pyrimidine ribonucleotide.
pyrimidine deoxyribonucleotide interconversion (GO:0015955)
Namespace: biological_process
Definition: The chemical reactions and pathways by which a pyrimidine deoxyribonucleotide is synthesized from another pyrimidine deoxyribonucleotide.
obsolete bis(5'-nucleosidyl) oligophosphate metabolic process (GO:0015956)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving a bis(5'-nucleosidyl) oligophosphate, a compound formed of two nucleosides joined together through their 5' carbons by a chain of phosphate molecules.
Synonyms: bis(5'-nucleosidyl) oligophosphate metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
bis(5'-nucleosidyl) oligophosphate biosynthetic process (GO:0015957)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of a bis(5'-nucleosidyl) oligophosphate, a compound formed of two nucleosides joined together through their 5' carbons by a chain of phosphate molecules.
Synonyms: bis(5'-nucleosidyl) oligophosphate anabolism; bis(5'-nucleosidyl) oligophosphate biosynthesis; bis(5'-nucleosidyl) oligophosphate formation; bis(5'-nucleosidyl) oligophosphate synthesis
bis(5'-nucleosidyl) oligophosphate catabolic process (GO:0015958)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of a bis(5'-nucleosidyl) oligophosphate, a compound formed of two nucleosides joined together through their 5' carbons by a chain of phosphate molecules.
Synonyms: bis(5'-nucleosidyl) oligophosphate breakdown; bis(5'-nucleosidyl) oligophosphate catabolism; bis(5'-nucleosidyl) oligophosphate degradation
diadenosine polyphosphate metabolic process (GO:0015959)
Namespace: biological_process
Definition: The chemical reactions and pathways involving diadenosine polyphosphate, a derivative of the nucleoside adenosine with phosphate groups attached.
Synonyms: diadenosine polyphosphate metabolism
diadenosine polyphosphate biosynthetic process (GO:0015960)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of diadenosine polyphosphate, a derivative of the nucleoside adenosine with phosphate groups attached.
Synonyms: diadenosine polyphosphate anabolism; diadenosine polyphosphate biosynthesis; diadenosine polyphosphate formation; diadenosine polyphosphate synthesis
diadenosine polyphosphate catabolic process (GO:0015961)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of diadenosine polyphosphate, a derivative of the nucleoside adenosine with phosphate groups attached.
Synonyms: diadenosine polyphosphate breakdown; diadenosine polyphosphate catabolism; diadenosine polyphosphate degradation
obsolete diadenosine triphosphate metabolic process (GO:0015962)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving diadenosine triphosphate, a derivative of the nucleoside adenosine with three phosphate groups attached.
Synonyms: diadenosine triphosphate metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
diadenosine triphosphate biosynthetic process (GO:0015963)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of diadenosine triphosphate, a derivative of the nucleoside adenosine with three phosphate groups attached.
Synonyms: diadenosine triphosphate anabolism; diadenosine triphosphate biosynthesis; diadenosine triphosphate formation; diadenosine triphosphate synthesis
diadenosine triphosphate catabolic process (GO:0015964)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of diadenosine triphosphate, a derivative of the nucleoside adenosine with three phosphate groups attached.
Synonyms: diadenosine triphosphate breakdown; diadenosine triphosphate catabolism; diadenosine triphosphate degradation
obsolete diadenosine tetraphosphate metabolic process (GO:0015965)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving diadenosine tetraphosphate, a derivative of the nucleoside adenosine with four phosphate groups attached.
Synonyms: diadenosine tetraphosphate metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
diadenosine tetraphosphate biosynthetic process (GO:0015966)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of diadenosine tetraphosphate, a derivative of the nucleoside adenosine with four phosphate groups attached.
Synonyms: diadenosine tetraphosphate anabolism; diadenosine tetraphosphate biosynthesis; diadenosine tetraphosphate formation; diadenosine tetraphosphate synthesis
diadenosine tetraphosphate catabolic process (GO:0015967)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of diadenosine tetraphosphate, a derivative of the nucleoside adenosine with four phosphate groups attached.
Synonyms: diadenosine tetraphosphate breakdown; diadenosine tetraphosphate catabolism; diadenosine tetraphosphate degradation
stringent response (GO:0015968)
Namespace: biological_process
Definition: A specific global change in the metabolism of a bacterial cell (the downregulation of nucleic acid and protein synthesis, and the simultaneous upregulation of protein degradation and amino acid synthesis) as a result of starvation.
guanosine tetraphosphate metabolic process (GO:0015969)
Namespace: biological_process
Definition: The chemical reactions and pathways involving guanine tetraphosphate (5'-ppGpp-3'), a derivative of guanine riboside with four phosphates.
Synonyms: guanosine tetraphosphate (5'-ppGpp-3') metabolic process; guanosine tetraphosphate (5'-ppGpp-3') metabolism; guanosine tetraphosphate metabolism
guanosine tetraphosphate biosynthetic process (GO:0015970)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of guanine tetraphosphate (5'-ppGpp-3'), a derivative of guanine riboside with four phosphates.
Synonyms: guanosine tetraphosphate (5'-ppGpp-3') biosynthesis; guanosine tetraphosphate (5'-ppGpp-3') biosynthetic process; guanosine tetraphosphate anabolism; guanosine tetraphosphate biosynthesis; guanosine tetraphosphate formation; guanosine tetraphosphate synthesis
guanosine tetraphosphate catabolic process (GO:0015971)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of guanine tetraphosphate (5'-ppGpp-3'), a derivative of guanine riboside with four phosphates.
Synonyms: guanosine tetraphosphate (5'-ppGpp-3') catabolic process; guanosine tetraphosphate (5'-ppGpp-3') catabolism; guanosine tetraphosphate breakdown; guanosine tetraphosphate catabolism; guanosine tetraphosphate degradation
guanosine pentaphosphate metabolic process (GO:0015972)
Namespace: biological_process
Definition: The chemical reactions and pathways involving guanine pentaphosphate (5'-pppGpp-3'), a derivative of guanine riboside with five phosphates.
Synonyms: guanosine pentaphosphate (5'-pppGpp-3') metabolic process; guanosine pentaphosphate (5'-pppGpp-3') metabolism; guanosine pentaphosphate metabolism
guanosine pentaphosphate biosynthetic process (GO:0015973)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of guanine pentaphosphate (5'-pppGpp-3'), a derivative of guanine riboside with five phosphates.
Synonyms: guanosine pentaphosphate (5'-pppGpp-3') biosynthesis; guanosine pentaphosphate (5'-pppGpp-3') biosynthetic process; guanosine pentaphosphate anabolism; guanosine pentaphosphate biosynthesis; guanosine pentaphosphate formation; guanosine pentaphosphate synthesis
guanosine pentaphosphate catabolic process (GO:0015974)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of guanine pentaphosphate (5'-pppGpp-3'), a derivative of guanine riboside with five phosphates.
Synonyms: guanosine pentaphosphate (5'-pppGpp-3') catabolic process; guanosine pentaphosphate (5'-pppGpp-3') catabolism; guanosine pentaphosphate breakdown; guanosine pentaphosphate catabolism; guanosine pentaphosphate degradation
energy derivation by oxidation of reduced inorganic compounds (GO:0015975)
Namespace: biological_process
Definition: The chemical reactions and pathways by which a cell derives energy from inorganic compounds; results in the oxidation of the compounds from which energy is released.
Synonyms: chemolithotrophie; chemolithotrophy; lithotrophy
carbon utilization (GO:0015976)
Namespace: biological_process
Definition: A series of processes that forms an integrated mechanism by which a cell or an organism detects the depletion of primary carbon sources and then activates genes to scavenge the last traces of the primary carbon source and to transport and metabolize alternative carbon sources such as carbon dioxide or carbonic acid. The utilization process begins when the cell or organism detects carbon levels, includes the activation of genes whose products detect, transport or metabolize carbon-containing substances, and ends when carbon is incorporated into the cell or organism's metabolism.
Synonyms: carbon utilization by utilization of organic compounds; heterotrophy
carbon fixation (GO:0015977)
Namespace: biological_process
Definition: A metabolic process in which carbon (usually derived from carbon dioxide) is incorporated into organic compounds (usually carbohydrates).
Synonyms: autotrophic CO2 fixation; autotrophic CO2 fixation pathway; autotrophy; carbon dioxide fixation
photosynthesis (GO:0015979)
Namespace: biological_process
Definition: The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
energy derivation by oxidation of organic compounds (GO:0015980)
Namespace: biological_process
Definition: The chemical reactions and pathways by which a cell derives energy from organic compounds; results in the oxidation of the compounds from which energy is released.
Synonyms: chemoorganotrophy
obsolete passive proton transport, down the electrochemical gradient (GO:0015981)
Namespace: biological_process
Definition: OBSOLETE. The passive movement of protons from areas of high proton concentration and electrical potential to areas where concentration and electrical potential are low.
Synonyms: passive proton transport, down the electrochemical gradient
Comment: This term was made obsolete because it represents a passive process which occurs without the aid of gene products.
obsolete antiport (GO:0015982)
Namespace: biological_process
Definition: OBSOLETE. The process of coupled solute translocation in which two solutes equilibrate across an osmotic barrier, the translocation of solute being coupled to the translocation of the other in the opposite direction.
Synonyms: antiport
Comment: This term was made obsolete because it represents a molecular function rather than a biological process.
energy coupled proton transport, down electrochemical gradient (GO:0015985)
Namespace: biological_process
Definition: The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that provides energy for the synthesis of ATP or GTP.
proton motive force-driven ATP synthesis (GO:0015986)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of ATP driven by transport of protons across a membrane to generate an electrochemical gradient (proton-motive force).
Synonyms: ATP synthesis coupled proton transport; chemiosmosis
GTP synthesis coupled proton transport (GO:0015987)
Namespace: biological_process
Definition: The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers GTP synthesis.
energy coupled proton transmembrane transport, against electrochemical gradient (GO:0015988)
Namespace: biological_process
Definition: The transport of protons across a membrane and against an electrochemical gradient, using energy from a source such as ATP hydrolysis, light, or electron transport.
obsolete light-driven proton transport (GO:0015989)
Namespace: biological_process
Definition: OBSOLETE. The transport of protons against an electrochemical gradient, using energy from light.
Comment: This term has been obsoleted because it represents a molecular function.
electron transport coupled proton transport (GO:0015990)
Namespace: biological_process
Definition: The transport of protons against an electrochemical gradient, using energy from electron transport.
obsolete molecular hydrogen transport (GO:0015993)
Namespace: biological_process
Definition: OBSOLETE. The directed movement of molecular hydrogen (H2) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
Comment: The reason for obsoletion is that there molecular hydrogen (H2) diffuses passively through membranes (see https://www.researchgate.net/post/How_molecular_hydrogen_is_transported_through_the_cytoplasmic_membrane_of_Escherichia_coli).
chlorophyll metabolic process (GO:0015994)
Namespace: biological_process
Definition: The chemical reactions and pathways involving chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment.
Synonyms: chlorophyll metabolism
chlorophyll biosynthetic process (GO:0015995)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, from less complex precursors.
Synonyms: chlorophyll anabolism; chlorophyll biosynthesis; chlorophyll formation; chlorophyll synthesis
chlorophyll catabolic process (GO:0015996)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, into less complex products.
Synonyms: chlorophyll breakdown; chlorophyll catabolism; chlorophyll degradation
obsolete ubiquinone biosynthetic process monooxygenase activity (GO:0015997)
Namespace: molecular_function
Definition: OBSOLETE. (Was not defined before being made obsolete).
Synonyms: coenzyme Q biosynthesis monooxygenase activity; coenzyme Q biosynthetic process monooxygenase activity; ubiquinone anabolism monooxygenase activity; ubiquinone biosynthetic process monooxygenase activity; ubiquinone formation monooxygenase activity; ubiquinone synthesis monooxygenase activity
Comment: This term was made obsolete because it incorporates biological process information.
obsolete obsolete sulfite reductase activity (GO:0016002)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: hydrogen sulfide + acceptor + 3 H2O = sulfite + reduced acceptor.
Synonyms: assimilatory sulfite reductase activity; assimilatory-type sulfite reductase activity; hydrogen-sulfide:(acceptor) oxidoreductase activity; hydrogen-sulfide:acceptor oxidoreductase activity; sulphite reductase activity
Comment: The reason for obsoletion is that this term was an unnecessary grouping term.