LiteFold/GO huggingface dataset:
positive regulation of abscisic acid biosynthetic process (GO:0010116)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of abscisic acid.
Synonyms: activation of abscisic acid biosynthetic process; positive regulation of abscisic acid anabolism; positive regulation of abscisic acid biosynthesis; positive regulation of abscisic acid formation; positive regulation of abscisic acid synthesis; stimulation of abscisic acid biosynthetic process; up regulation of abscisic acid biosynthetic process; up-regulation of abscisic acid biosynthetic process; upregulation of abscisic acid biosynthetic process
stomatal movement (GO:0010118)
Namespace: biological_process
Definition: The process of opening or closing of stomata, which is directly related to the stomatal conductance (measuring rate of passage of either water vapor or carbon dioxide (CO2) through stomata).
regulation of stomatal movement (GO:0010119)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of stomatal movement.
camalexin biosynthetic process (GO:0010120)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of camalexin, an indole phytoalexin.
Synonyms: camalexin anabolism; camalexin biosynthesis; camalexin formation; camalexin synthesis
obsolete L-arginine catabolic process to proline via ornithine (GO:0010121)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the breakdown of arginine into other compounds, including proline, via ornithine.
Synonyms: arginine breakdown to proline via ornithine; arginine degradation to proline via ornithine
Comment: This term was obsoleted because it represents a specific instance of a pathway that should be captured as a GO-CAM model.
obsolete arginine catabolic process to alanine via ornithine (GO:0010122)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the breakdown of arginine into other compounds, including alanine, via ornithine.
Synonyms: arginine breakdown to alanine via ornithine; arginine degradation to alanine via ornithine
Comment: The reason for obsoletion is that there is no evidence that this function/process/component exists in vivo.
obsolete acetate catabolic process to butyrate, ethanol, acetone and butanol (GO:0010123)
Namespace: biological_process
Definition: OBSOLETE. The anaerobic chemical reactions and pathways resulting in the breakdown of acetate to form butyrate, ethanol, acetone and butanol.
Synonyms: acetate fermentation to butyrate, ethanol, acetone and butanol
Comment: This term was obsoleted because it is not believed to exist.
phenylacetate catabolic process (GO:0010124)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of phenylacetate.
Synonyms: phenylacetate breakdown; phenylacetate catabolism; phenylacetate degradation
mycothiol biosynthetic process (GO:0010125)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of mycothiol, which consists of N-acetyl-L-cysteine linked to a pseudodisaccharide, D-glucosamine and myo-inositol. Mycothiol is produced in actinomycetes like mycobacteria and serves similar functions to glutathione.
Synonyms: mycothiol anabolism; mycothiol biosynthesis; mycothiol formation; mycothiol synthesis
mycothiol metabolic process (GO:0010126)
Namespace: biological_process
Definition: The chemical reactions and pathways involving mycothiol, which consists of N-acetyl-L-cysteine linked to a pseudodisaccharide, D-glucosamine and myo-inositol. Mycothiol is produced in actinomycetes like mycobacteria and serves similar functions to glutathione.
Synonyms: mycothiol metabolism
mycothiol-dependent detoxification (GO:0010127)
Namespace: biological_process
Definition: The chemical reactions using mycothiol to convert an alkylating agent to an S-conjugate of mycothiol. The latter is cleaved to release mercapturic acid which is excreted from the cell.
Synonyms: mycothiol-dependent detoxification of alkylating agent
cyclohexane-1-carboxylate catabolic process (GO:0010129)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of cyclohexane-1-carboxylate, an alicyclic acid.
Synonyms: anaerobic cyclohexane-1-carboxylate breakdown; anaerobic cyclohexane-1-carboxylate catabolism; anaerobic cyclohexane-1-carboxylate degradation
anaerobic ethylbenzene catabolic process (GO:0010130)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of ethylbenzene, a benzene derivative with an ethyl group attached to the ring, which occurs in the absence of oxygen.
Synonyms: anaerobic ethylbenzene breakdown; anaerobic ethylbenzene catabolism; anaerobic ethylbenzene degradation
obsolete sucrose catabolic process, using invertase or sucrose synthase (GO:0010131)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the breakdown of sucrose by the enzymatic action of either invertase or sucrose synthase.
Synonyms: sucrose breakdown, using invertase or sucrose synthase; sucrose catabolic process, using invertase or sucrose synthase; sucrose catabolism, using invertase or sucrose synthase; sucrose degradation, using invertase or sucrose synthase
Comment: This term was made obsolete because it describes two different routes of sucrose catabolism, both of which are represented by molecular functions.
dhurrin biosynthetic process (GO:0010132)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of dhurrin, a cyanogenic glucoside which functions as a plant defense compound.
Synonyms: dhurrin anabolism; dhurrin biosynthesis; dhurrin formation; dhurrin synthesis
obsolete L-proline catabolic process to L-glutamate (GO:0010133)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the breakdown of L-proline into L-glutamate.
Synonyms: proline breakdown to glutamate; proline degradation to glutamate; proline oxidation
Comment: This term was obsoleted because it represents a specific instance of a pathway that should be captured as a GO-CAM model.
sulfate assimilation via adenylyl sulfate reduction (GO:0010134)
Namespace: biological_process
Definition: The pathway by which inorganic sulfate is activated, reduced and incorporated into sulfated compounds, where the activated sulfate, adenylyl-sulfate, is reduced to sulfite by the activity of adenylyl-sulfate reductase.
Synonyms: sulphate assimilation via adenylyl sulphate reduction
obsolete ureide metabolic process (GO:0010135)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving ureide, allantoin and allantoate, which are the organic forms of nitrogen in nitrogen fixing and transporting plants.
Synonyms: ureide metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
ureide catabolic process (GO:0010136)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of ureide, which is the organic form of nitrogen in nitrogen fixing and transporting plants with the release of ammonium.
Synonyms: ureide breakdown; ureide catabolism; ureide degradation
ureide biosynthetic process (GO:0010137)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of ureide, the organic form of nitrogen in nitrogen fixing and transporting plants, from IMP, which is synthesized de novo during nitrogen fixation by roots.
Synonyms: ureide anabolism; ureide biosynthesis; ureide formation; ureide synthesis
pyrimidine ribonucleotide salvage (GO:0010138)
Namespace: biological_process
Definition: The pathway by which pyrimidine bases or pyrimidine ribonucleosides from pyrimidine nucleotide breakdown are converted back to pyrimidine ribonucleotides. The salvage pathway is important where there is no de novo pyrimidine nucleotide biosynthesis.
pyrimidine deoxyribonucleotide salvage (GO:0010139)
Namespace: biological_process
Definition: The pathway by which pyrimidine bases or pyrimidine deoxyribonucleotides from pyrimidine nucleotide breakdown are converted back to pyrimidine deoxyribonucleotides. The salvage pathway is important where there is no de novo pyrimidine deoxyribonucleotide biosynthesis.
obsolete adenine, hypoxanthine and their nucleoside salvage (GO:0010140)
Namespace: biological_process
Definition: OBSOLETE. The pathway by which adenine, hypoxanthine and their nucleosides from purine nucleotides breakdown are converted back to purine nucleotides. The salvage pathway is important where there is no de-novo purine nucleotide biosynthesis.
Synonyms: adenine, hypoxanthine and their nucleoside salvage
Comment: This term was made obsolete because it represents multiple processes that are represented elsewhere in the process ontology.
obsolete guanine, xanthine and their nucleoside salvage (GO:0010141)
Namespace: biological_process
Definition: OBSOLETE. The pathway by which guanine, xanthine and their nucleoside from purine nucleotides breakdown are converted back to purine nucleotides. The pathway is important in cells where there is no de-novo purine nucleotides biosynthesis.
Synonyms: guanine, xanthine and their nucleoside salvage
Comment: This term was made obsolete because it represents multiple processes that are represented elsewhere in the process ontology.
farnesyl diphosphate biosynthetic process, mevalonate pathway (GO:0010142)
Namespace: biological_process
Definition: The pathway that converts acetate, in the form of acetyl-CoA, to farnesyl diphosphate (FPP) through a series of mevalonate intermediates. Farnesyl diphosphate is an important substrate for other essential pathways, such as biosynthesis of sterols.
Synonyms: Ac-MVA pathway; acetate-mevalonate pathway; farnesyl diphosphate anabolism, mevalonate pathway; farnesyl diphosphate formation, mevalonate pathway; farnesyl diphosphate synthesis, mevalonate pathway; isoprenoid pathway
cutin biosynthetic process (GO:0010143)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of cutin, a waxy substance, which combined with cellulose forms a substance nearly impervious to water and constituting the cuticle in plants.
Synonyms: cutin anabolism; cutin biosynthesis; cutin formation; cutin synthesis
pyridoxal phosphate biosynthetic process from pyridoxamine (GO:0010144)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of pyridoxal phosphate, the active form of vitamin B6, from pyridoxamine.
Synonyms: pyridoxal 5'-phosphate salvage from pyridoxamine; pyridoxal phosphate anabolism from pyridoxamine; pyridoxal phosphate formation from pyridoxamine; pyridoxal phosphate synthesis from pyridoxamine; vitamin B6 biosynthesis from pyridoxamine; vitamin B6 biosynthetic process from pyridoxamine
obsolete fructan metabolic process (GO:0010145)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving fructan, a polysaccharide consisting of fructose residues.
Synonyms: fructan metabolism; levan metabolic process
Comment: This term was obsoleted because it is an unnecessary grouping class.
fructan biosynthetic process (GO:0010146)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of fructan a polysaccharide consisting of fructose residues.
Synonyms: fructan anabolism; fructan biosynthesis; fructan formation; fructan synthesis; levan biosynthesis; levan biosynthetic process
fructan catabolic process (GO:0010147)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of fructan, a polysaccharide consisting of fructose residues.
Synonyms: fructan breakdown; fructan catabolism; fructan degradation; levan catabolic process; levan catabolism
transpiration (GO:0010148)
Namespace: biological_process
Definition: Release of water by the plant into the air as water vapor mainly through leaves.
obsolete senescence (GO:0010149)
Namespace: biological_process
Definition: OBSOLETE. A preprogrammed process associated with the dismantling of an anatomical structure and an overall decline in metabolism. This may include the breakdown of organelles, membranes and other cellular components. An example of this process is found in Arabidopsis thaliana, when older leaves or floral organs are shed.
Synonyms: senescence
Comment: This term was made obsolete because its name is ambiguous and it is covered by more specific terms: 'plant organ senescence ; GO:0090693' and 'cellular senescence ; GO:0090398'.
leaf senescence (GO:0010150)
Namespace: biological_process
Definition: The last stage of leaf development during which programmed degradation of macromolecules and nutrient recycling take place.
chloroplast elongation (GO:0010151)
Namespace: biological_process
Definition: Expansion of the chloroplast that usually precedes division.
pollen maturation (GO:0010152)
Namespace: biological_process
Definition: The final stages of microgametogenesis after the trinucleate stage has been reached resulting in viable pollen grains.
obsolete polar cell elongation (GO:0010153)
Namespace: biological_process
Definition: OBSOLETE. Cell expansion that results in an increase in cell size along the axis of an organ in a polarized fashion.
Synonyms: polar cell elongation; polarity-dependent cell elongation
Comment: This term was made obsolete because it did not represent a process discrete from its sibling terms.
fruit development (GO:0010154)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the fruit over time, from its formation to the mature structure. The fruit is a reproductive body of a seed plant.
regulation of proton transport (GO:0010155)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of proton transport into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
response to chlorate (GO:0010157)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chlorate stimulus.
abaxial cell fate specification (GO:0010158)
Namespace: biological_process
Definition: The process in which a cell becomes capable of differentiating autonomously into an abaxial cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed.
specification of animal organ position (GO:0010159)
Namespace: biological_process
Definition: The regionalization process in which information that determines the correct position at which animal organ primordia are formed is generated and perceived resulting in correct positioning of the new animal organ.
seed dormancy process (GO:0010162)
Namespace: biological_process
Definition: A dormancy process in which dormancy (sometimes called a dormant state) is induced, maintained or broken in a seed. Seed dormancy is a suspension of most physiological activity and growth in a seed, including the embryo contained therein, that can be reactivated. It often requires special conditions for reactivation, such as specific temperature, scarification, or leaching of inhibitors.
Synonyms: seed dormancy
response to cesium ion (GO:0010164)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cesium stimulus.
Synonyms: response to cesium
response to X-ray (GO:0010165)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of X-ray radiation. An X-ray is a form of electromagnetic radiation with a wavelength in the range of 10 nanometers to 100 picometers (corresponding to frequencies in the range 30 PHz to 3 EHz).
Synonyms: response to X-ray radiation stimulus
wax metabolic process (GO:0010166)
Namespace: biological_process
Definition: The chemical reactions and pathways involving wax, a compound containing C16 and C18 fatty acids.
Synonyms: wax metabolism
response to nitrate (GO:0010167)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrate stimulus.
ER body (GO:0010168)
Namespace: cellular_component
Definition: A novel compartment found in plant cells that is derived from the ER. The structures have a characteristic shape and size (10 mm long and 0.5 mm wide) and are surrounded with ribosomes. They have been found in Arabidopsis thaliana and related Brassicaceae species.
Synonyms: endoplasmic reticulum body
thioglucosidase complex (GO:0010169)
Namespace: cellular_component
Definition: A large (200-800 kDa) multiprotein complex formed by 70-kDa and 5-kDa myrosinases, myrosinase- binding proteins (MBPs), MBP-related proteins and myrosinase-associated proteins. The complex has been identified in Brassica napus seeds.
Synonyms: myrosinase complex
glucose-1-phosphate adenylyltransferase complex (GO:0010170)
Namespace: cellular_component
Definition: Complex that catalyzes the synthesis of ADP-glucose and pyrophosphate from glucose-1-phosphate and ATP. In plants, the complex is a heterotetramer composed of two types of subunits (small and large). In bacteria, the enzyme complex is composed of four identical subunits.
body morphogenesis (GO:0010171)
Namespace: biological_process
Definition: The process in which the anatomical structures of the soma are generated and organized.
embryonic body morphogenesis (GO:0010172)
Namespace: biological_process
Definition: The process in which the anatomical structures of the embryonic soma are generated and organized.
nucleoside transmembrane transporter activity, against a concentration gradient (GO:0010174)
Namespace: molecular_function
Definition: Enables the transfer of a nucleoside, from one side of a membrane to the other, up a concentration gradient.
Synonyms: concentrative nucleoside transporter activity
homogentisate phytyltransferase activity (GO:0010176)
Namespace: molecular_function
Definition: Catalysis of the reaction: homogentisate + phytyl diphosphate + H+ = 2-methyl-6-phytyl-1,4-benzoquinone + CO2 + diphosphate. 2-methyl-6-phytyl-1,4-benzoquinone is also known as 2-methyl-6-phytylplastoquinol.
Synonyms: HPT activity
methylthioalkylmalate synthase activity (GO:0010177)
Namespace: molecular_function
Definition: Catalysis of the reaction: acetyl-CoA + an omega-(methylsulfanyl)-2-oxoalkanoate + H2O = a 2-(omega-methylsulfanyl)alkylmalate + CoA + H+.
Synonyms: 2-(2'-methylthio)ethylmalate synthase activity
IAA-amino acid conjugate hydrolase activity (GO:0010178)
Namespace: molecular_function
Definition: Catalysis of the cleavage of the amide bond between IAA (auxin) and the conjugated amino acid.
IAA-Ala conjugate hydrolase activity (GO:0010179)
Namespace: molecular_function
Definition: Catalysis of the reaction: indole-3-acetyl-alanine + H2O = indole-3-acetate + L-alanine.
thioglucosidase binding (GO:0010180)
Namespace: molecular_function
Definition: Binding to a thioglucosidase enzyme.
Synonyms: myrosinase binding
FMN binding (GO:0010181)
Namespace: molecular_function
Definition: Binding to flavin mono nucleotide. Flavin mono nucleotide (FMN) is the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes.
Synonyms: flavin mononucleotide binding
sugar mediated signaling pathway (GO:0010182)
Namespace: biological_process
Definition: The process in which a change in the level of a mono- or disaccharide such as glucose, fructose or sucrose triggers the expression of genes controlling metabolic and developmental processes.
Synonyms: sugar mediated signalling
pollen tube guidance (GO:0010183)
Namespace: biological_process
Definition: The process in which the growth of pollen tube is directed towards the female gametophyte.
cytokinin transport (GO:0010184)
Namespace: biological_process
Definition: The directed movement of cytokinins, a class of adenine-derived compounds that can function in plants as growth regulators, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
regulation of cellular defense response (GO:0010185)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of cellular defense response.
Synonyms: regulation of cellular defence response
positive regulation of cellular defense response (GO:0010186)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of cellular defense response.
Synonyms: activation of cellular defense response; positive regulation of cellular defence response; stimulation of cellular defense response; up regulation of cellular defense response; up-regulation of cellular defense response; upregulation of cellular defense response
negative regulation of seed germination (GO:0010187)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of seed germination.
Synonyms: down regulation of seed germination; down-regulation of seed germination; downregulation of seed germination; inhibition of seed germination
response to microbial phytotoxin (GO:0010188)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a microbial phytotoxin stimulus. A microbial phytotoxin is a chemical substance produced by microbes which is toxic to plants.
vitamin E biosynthetic process (GO:0010189)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of vitamin E, tocopherol, which includes a series of eight structurally similar compounds. Alpha-tocopherol is the most active form in humans and is a powerful biological antioxidant.
Synonyms: alpha-tocopherol biosynthesis; alpha-tocopherol biosynthetic process; tocopherol biosynthesis; tocopherol biosynthetic process; vitamin E anabolism; vitamin E biosynthesis; vitamin E formation; vitamin E synthesis
cytochrome b6f complex assembly (GO:0010190)
Namespace: biological_process
Definition: Formation of cytochrome b6f complex, a complex that transfers electrons from reduced plastoquinone to oxidized plastocyanin and translocates protons from the stroma to the lumen, by the aggregation, arrangement and bonding together of its constituents.
Synonyms: cytochrome b6f complex biogenesis
obsolete mucilage metabolic process (GO:0010191)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving mucilage, a gelatinous substance secreted by plants.
Synonyms: mucilage metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
mucilage biosynthetic process (GO:0010192)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of mucilage, a gelatinous substance secreted by plants.
Synonyms: mucilage anabolism; mucilage biosynthesis; mucilage formation; mucilage synthesis
response to ozone (GO:0010193)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ozone stimulus.