LiteFold/GO huggingface dataset:
effector-mediated activation of plant hypersensitive response by symbiont (GO:0080185)
Namespace: biological_process
Definition: A symbiont process in which a molecule secreted by the symbiont activates a resistance gene-dependent defense response signaling pathway in the plant host, in order to activate a hypersensitive response to induce necrosis. In the plant, this process involves the direct or indirect recognition of the symbiont effector protein for example through plant resistance receptor or R proteins (or R genes).
Synonyms: activation by organism of defense response in host by specific elicitors; activation by organism of host gene-for-gene resistance; activation by organism of host resistance gene-dependent defense response; activation by symbiont of host resistance gene-dependent defense response; activation of HR; activation of hypersensitive response; avirulence protein; effector-mediated induction of plant hypersensitive response by symbiont; effector-triggered immunity; effector-triggered induction of host innate immune response; effector-triggered induction of plant hypersensitive response by symbiont; effector-triggered necrosis; ETI triggered of host innate immune response; ETI-triggered of host innate immune response; induction by organism of defense response in host by specific elicitors; induction by organism of host gene-for-gene resistance; induction by organism of pathogen-race/host plant cultivar-specific resistance in host; induction by organism of resistance gene-dependent defense response of other organism involved in symbiotic interaction; induction by symbiont of host resistance gene-dependent defense response; induction of effector-triggered immunity (ETI); necrotrophic effector; positive regulation by organism of defense response in host by specific elicitors; positive regulation by organism of host gene-for-gene resistance; positive regulation by symbiont of host resistance gene-dependent defense response; positive regulation by symbiont of plant HR; positive regulation by symbiont of plant hypersensitive response
developmental vegetative growth (GO:0080186)
Namespace: biological_process
Definition: The increase in size or mass of non-reproductive plant parts.
gene silencing by siRNA-directed DNA methylation (GO:0080188)
Namespace: biological_process
Definition: A small RNA-based gene silencing process in which small interfering RNAs (siRNAs) guide DNA methylation to the siRNA-generating genomic loci and other loci that are homologous to the siRNAs for de novo DNA methylation. This results in a heterochromatin assembly, a chromatin conformation that is refractory to transcription. In general this process consists of three phases: biogenesis of siRNAs, scaffold RNA production, and the formation of the guiding complex that recruits de novo DNA methyltransferases to the target loci. Transposable elements are silenced by this mechanism.
Synonyms: gene silencing by RNA-directed DNA methylation; RdDM; RNA-directed DNA methylation
Comment: This process has been shown in plants and in yeasts, but so far has not been detected in vertebrates, organisms that lack RNA-dependent RNA polymerase.
primary growth (GO:0080189)
Namespace: biological_process
Definition: Growth of a plant structure from the time of its initiation by an apical meristem until its expansion is completed.
Comment: Has its inception in the apical meristems (PO:0020144) and continues in their derivative meristems - protoderm (PO:0006210) and procambium (PO:0025275) - even in older tissues. Primary and secondary growth can occur simultaneously in the same organism.
secondary thickening (GO:0080191)
Namespace: biological_process
Definition: Lateral growth of a plant axis (shoot axis or root) that is an increase in thickness resulting from formation of tissue from a secondary thickening meristem.
Comment: Occurs in shoot axes in some monocotyledons such as Dracaena, and rarely in roots of monocotyledons. Distinct from primary thickening, because it is distant from and generally discontinuous with the apical meristem.
primary thickening (GO:0080192)
Namespace: biological_process
Definition: Lateral growth of a plant axis (shoot axis or root) that is an increase in thickness resulting from the activity of a primary thickening meristem.
Comment: Occurs in shoot axes and rarely in roots in many monocotyledons.
diffuse secondary thickening (GO:0080193)
Namespace: biological_process
Definition: Lateral growth of the older parts of a stem that occurs when the central parenchyma cells and the not yet fully differentiated fiber cells of the bundle sheaths continue to undergo cell division and expansion for a long period of time, leading to an increase in girth of the stem.
Comment: Occurs in the stems (PO:0009047) of some Arecaceae (palms).
obsolete modification by symbiont of host morphology or physiology via protein secreted by type V secretion system (GO:0085000)
Namespace: biological_process
Definition: OBSOLETE. The process in which an organism effects a change in the structure or function of its host organism, mediated by a substance secreted by a type V secretion system in the organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Comment: This term was obsoleted because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target.
formation of stylet for nutrient acquisition (GO:0085001)
Namespace: biological_process
Definition: The assembly of a stylet, a hollow protrusible spear-like symbiont structure projected into the host cell for the purpose of obtaining nutrients. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Synonyms: formation by symbiont of stylet for nutrient acquisition from host
obsolete interaction with host mediated by secreted substance released by symbiont from symbiotic structure (GO:0085002)
Namespace: biological_process
Definition: OBSOLETE. An interaction with the host organism mediated by a symbiont secreted substance released by specialized structures generated in either organisms as a result of the symbiotic interaction. The term host is used for the larger (macro) of the two members of a symbiosis.
Comment: This term was obsoleted because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target.
obsolete interaction with host via secreted substance released from stylet (GO:0085003)
Namespace: biological_process
Definition: OBSOLETE. An interaction with the host organism mediated by a substance released by the other (symbiont) organism via the stylet, a hollow protrusible spear-like structure in the symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Comment: This term was deprecated because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target.
obsolete interaction with host via secreted substance released from invasive hyphae (GO:0085005)
Namespace: biological_process
Definition: OBSOLETE. An interaction with the host organism mediated by a substance released by the other (symbiont) organism via invasive hyphae. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Comment: This term was deprecated because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target.
obsolete interaction with host mediated by symbiont secreted substance released from symbiont-containing vacuole (GO:0085006)
Namespace: biological_process
Definition: OBSOLETE. An interaction with the host organism mediated by a substance released by the other (symbiont) organism via a symbiont-containing vacuole, a specialized sac within the host in which the symbiont resides. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Synonyms: interaction with host mediated by symbiont secreted substance released from parasitophorous vacuole
Comment: This term was deprecated because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target.
obsolete interaction with host via secreted substance released from rhoptry (GO:0085007)
Namespace: biological_process
Definition: OBSOLETE. An interaction with the host organism mediated by a substance released by the other (symbiont) organism via the rhoptry, a large, club-shaped secretory organelle that forms part of the apical complex of an apicomplexan parasite. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Comment: This term was deprecated because it conflated the process in which a gene product is involved with the secreaton system by which it reaches its target.
obsolete interaction with host via secreted substance released from microneme (GO:0085008)
Namespace: biological_process
Definition: OBSOLETE. An interaction with the host organism mediated by a substance released by the other (symbiont) organism via the microneme, a small, elongated secretory organelle that forms part of the apical complex of an apicomplexan parasite. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Comment: This term was deprecated because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target.
obsolete interaction with host mediated by secreted substance entering host via endocytosis (GO:0085010)
Namespace: biological_process
Definition: OBSOLETE. An interaction with the host organism mediated by a secreted substance from the symbiont entering host cells via endocytosis of the substance. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Comment: This term was obsoleted because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target.
obsolete interaction with host via protein secreted by Sec complex (GO:0085011)
Namespace: biological_process
Definition: OBSOLETE. An interaction with the host organism mediated by a substance secreted by the symbiont organism by a Sec complex. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Synonyms: interaction with host via protein secreted by Sec secretion system
Comment: This term was obsoleted because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target.
obsolete interaction with host via protein secreted by Tat complex (GO:0085012)
Namespace: biological_process
Definition: OBSOLETE. An interaction with the host organism mediated by a substance secreted by the symbiont organism by a Tat complex. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Synonyms: interaction with host via protein secreted by Tat secretion system
Comment: This term was obsoleted because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target.
dormancy entry of symbiont in host (GO:0085014)
Namespace: biological_process
Definition: Entry into a dormant state of the symbiont within the host organism.
dormancy maintenance of symbiont in host (GO:0085015)
Namespace: biological_process
Definition: Any process in which a dormant state is maintained by the symbiont within the host organism.
Synonyms: non-replicating persistence; NRP
dormancy exit of symbiont in host (GO:0085016)
Namespace: biological_process
Definition: Exit from dormant state, also known as resuscitation, of the symbiont within the host organism.
Synonyms: resuscitation of symbiont
entry into host cell by a symbiont-containing vacuole (GO:0085017)
Namespace: biological_process
Definition: The invasion by a symbiont of a cell of a host organism, forming a vacuole in which the symbiont resides. The vacuole membrane is formed from lipids and proteins derived from both host and symbiont. Begins when the symbiont attaches on to the host cell membrane which invaginates and deepens as the symbiont enters, and ends when the host cell membrane closes behind the newly-formed vacuole.
Synonyms: symbiont entry into host cell forming a parasitophorous vacuole; symbiont entry into host cell forming a pathogen-containing vacuole; symbiont entry into host cell forming a symbiont-containing vacuole
obsolete maintenance of symbiont-containing vacuole by host (GO:0085018)
Namespace: biological_process
Definition: OBSOLETE. The process in which a host organism maintains the structure and function of a symbiont-containing vacuole. The symbiont-containing vacuole is a membrane-bounded vacuole within a host cell in which a symbiont organism resides, and can serve to reduce pathogenicity of invading symbionts by restricting them to the vacuolar compartment.
Synonyms: maintenance of parasitophorous vacuole; maintenance of pathogen-containing vacuole; maintenance of vacuolar integrity during bacterial infection
Comment: This term has been obsoleted because there is no evidence that this process exists.
formation of tubovesicular network for nutrient acquisition (GO:0085019)
Namespace: biological_process
Definition: The assembly of a symbiont-induced complex organelle that comprises of multiple protein and lipid domains for the purpose of obtaining nutrients from its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Synonyms: formation by symbiont of a tubovesicular network for nutrient acquisition from host; formation of a symbiont- induced tubovesicular network for nutrient acquisition from host
protein K6-linked ubiquitination (GO:0085020)
Namespace: biological_process
Definition: A protein ubiquitination process in which a polymer of ubiquitin, formed by linkages between lysine residues at position 6 of the ubiquitin monomers, is added to a protein. K6-linked ubiquitination is involved in DNA repair.
Synonyms: protein K6-linked polyubiquitination
obsolete modification by symbiont of host morphology or physiology via protein secreted by type I secretion system (GO:0085021)
Namespace: biological_process
Definition: OBSOLETE. The process in which an organism effects a change in the structure or function of its host organism, mediated by a substance secreted by a type I secretion system in the organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Comment: This term was obsoleted because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target.
obsolete modification by symbiont of host morphology or physiology via protein secreted by type VI secretion system (GO:0085022)
Namespace: biological_process
Definition: OBSOLETE. The process in which an organism effects a change in the structure or function of its host organism, mediated by a substance secreted by a type VI secretion system in the organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Comment: This term was obsoleted because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target.
obsolete modification by symbiont of host morphology or physiology via protein secreted by type VII secretion system (GO:0085023)
Namespace: biological_process
Definition: OBSOLETE. The process in which an organism effects a change in the structure or function of its host organism, mediated by a substance secreted by a type VII secretion system in the organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Comment: This term was obsoleted because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target.
obsolete modification by symbiont of host morphology or physiology via protein secreted by Sec complex (GO:0085024)
Namespace: biological_process
Definition: OBSOLETE. The process in which an organism (symbiont) effects a change in the structure or function of its host organism, mediated by a substance secreted by the Sec complex in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Synonyms: modification by symbiont of host morphology or physiology via protein secreted by the Sec secretion system
Comment: This term was obsoleted because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target.
tubovesicular membrane network (GO:0085026)
Namespace: cellular_component
Definition: A complex, symbiont-induced host-derived organelle that is comprised of multiple protein and lipid domains.
Synonyms: TVM network; TVN
extracellular matrix assembly (GO:0085029)
Namespace: biological_process
Definition: The aggregation, arrangement and bonding together of the extracellular matrix.
symbiont-mediated perturbation of host NF-kappaB cascade (GO:0085032)
Namespace: biological_process
Definition: A process in which a symbiont alters or subverts an NF-kappaB-mediated signaling cascade in its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Synonyms: modulation by symbiont of host I-kappaB kinase/NF-kappaB cascade; modulation by symbiont of host NF-kappaB-mediated signal transduction pathway; perturbation of host canonical NF-kappaB cascade; perturbation of host I-kappaB kinase/NF-kappaB cascade; symbiont-mediated perturbation of host canonical NF-kappaB cascade
symbiont-mediated activation of host NF-kappaB cascade (GO:0085033)
Namespace: biological_process
Definition: A process that initiates, promotes, or enhances a host NF-kappaB-mediated signaling cascade. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Synonyms: activation by symbiont of host I-kappaB kinase/NF-kappaB cascade; induction by symbiont of host I-kappaB kinase/NF-kappaB cascade; induction of host canonical NF-kappaB signal transduction; induction of host I-kappaB kinase/NF-kappaB cascade; positive regulation by symbiont of host I-kappaB kinase/NF-kappaB cascade; positive regulation by symbiont of host NF-kappaB-mediated signal transduction pathway; stimulation by symbiont of host I-kappaB kinase/NF-kappaB cascade; symbiont-mediated activation of host canonical NF-kappaB signal transduction; symbiont-mediated activation of host NF-kappaB signal transduction; up regulation by symbiont of host I-kappaB kinase/NF-kappaB cascade; up-regulation by symbiont of host I-kappaB kinase/NF-kappaB cascade; upregulation by symbiont of host I-kappaB kinase/NF-kappaB cascade
symbiont-mediated suppression of host NF-kappaB cascade (GO:0085034)
Namespace: biological_process
Definition: A process in which a symbiont interferes with, inhibits or disrupts an NF-kappaB-mediated signaling cascade in its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Synonyms: disruption of host canonical NF-kappaB cascade; disruption of host I-kappaB kinase/NF-kappaB cascade; negative regulation by symbiont of host I-kappaB kinase/NF-kappaB cascade; suppression by symbiont of host I-kappaB kinase/NF-kappaB cascade; symbiont-mediated suppression of host canonical NF-kappaB cascade
haustorium (GO:0085035)
Namespace: cellular_component
Definition: A projection from a cell or tissue that penetrates the host's cell wall and invaginates the host cell membrane.
Comment: See also: extrahaustorial matrix ; GO:0085036 and extrahaustorial membrane ; GO:0085037.
extrahaustorial matrix (GO:0085036)
Namespace: cellular_component
Definition: The space between the symbiont plasma membrane and the extrahaustorial membrane of the host.
Comment: See also: haustorium ; GO:0085035 and extrahaustorial membrane ; GO:0085037.
hyphal membrane (GO:0085039)
Namespace: cellular_component
Definition: A host-derived membrane surrounding the symbiont hypha during infection.
Synonyms: extra-invasive hyphal membrane
obsolete extra-invasive hyphal space (GO:0085040)
Namespace: cellular_component
Definition: OBSOLETE. The space between the symbiont plasma membrane and the extra-invasive hyphal membrane.
Comment: This term was obsoleted because the cellular component represented is not different from 'host cytoplasm'.
arbuscule (GO:0085041)
Namespace: cellular_component
Definition: Highly branched symbiont haustoria within host root cortex cells, responsible for nutrient exchange.
Comment: See also: periarbuscular membrane ; GO:0085042.
periarbuscular membrane (GO:0085042)
Namespace: cellular_component
Definition: A host-derived membrane surrounding the symbiont arbuscule during symbiosis.
Comment: See also: arbuscule ; GO:0085041.
symbiont-mediated disruption of host cuticle (GO:0085044)
Namespace: biological_process
Definition: The process in which an organism effects a change that impairs the structure or function of the host organism cuticle. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Synonyms: catabolism of host cuticle; degradation of host cuticle; disassembly by symbiont of host cuticle
cardiac muscle cell action potential (GO:0086001)
Namespace: biological_process
Definition: An action potential that occurs in a cardiac muscle cell.
cardiac muscle cell action potential involved in contraction (GO:0086002)
Namespace: biological_process
Definition: An action potential that occurs in a cardiac muscle cell and is involved in its contraction.
cardiac muscle cell contraction (GO:0086003)
Namespace: biological_process
Definition: The actin filament-based process in which cytoplasmic actin filaments slide past one another resulting in contraction of a cardiac muscle cell.
regulation of cardiac muscle cell contraction (GO:0086004)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of cardiac muscle cell contraction.
ventricular cardiac muscle cell action potential (GO:0086005)
Namespace: biological_process
Definition: An action potential that occurs in a ventricular cardiac muscle cell.
voltage-gated sodium channel activity involved in cardiac muscle cell action potential (GO:0086006)
Namespace: molecular_function
Definition: Enables the transmembrane transfer of a sodium ion by a voltage-gated channel through the plasma membrane of a cardiac muscle cell contributing to the depolarization phase of an action potential. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded.
voltage-gated calcium channel activity involved in cardiac muscle cell action potential (GO:0086007)
Namespace: molecular_function
Definition: Enables the transmembrane transfer of a calcium ion by a voltage-gated channel across the plasma membrane of a cardiac muscle cell that contributes to the depolarization phase of an action potential. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded.
voltage-gated potassium channel activity involved in cardiac muscle cell action potential repolarization (GO:0086008)
Namespace: molecular_function
Definition: Enables the transmembrane transfer of a potassium ion by a voltage-gated channel through the plasma membrane of a cardiac muscle cell contributing to the repolarization phase of an action potential. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded.
membrane repolarization (GO:0086009)
Namespace: biological_process
Definition: The process in which ions are transported across a membrane such that the membrane potential changes in the repolarizing direction, toward the steady state potential. For example, the repolarization during an action potential is from a positive membrane potential towards a negative resting potential.
membrane repolarization during action potential (GO:0086011)
Namespace: biological_process
Definition: The process in which ions are transported across a membrane such that the membrane potential changes in the direction from the positive membrane potential at the peak of the action potential towards the negative resting potential.