LiteFold/GO huggingface dataset:
obsolete positive regulation of phospholipid biosynthetic process by transcription from RNA polymerase II promoter (GO:0100032)
Namespace: biological_process
Definition: OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates phospholipid biosynthetic process.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete regulation of 4,6-pyruvylated galactose residue biosynthetic process by transcription from RNA polymerase II promoter (GO:0100034)
Namespace: biological_process
Definition: OBSOLETE. Any transcription from RNA polymerase II promoter process that regulates 4,6-pyruvylated galactose residue biosynthetic process.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete negative regulation of transmembrane transport by transcription from RNA polymerase II promoter (GO:0100035)
Namespace: biological_process
Definition: OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates transmembrane transport.
Comment: The term was obsoleted because it is better represented by a GO-CAM model.
obsolete positive regulation of purine nucleotide biosynthetic process by transcription from RNA polymerase II promoter (GO:0100036)
Namespace: biological_process
Definition: OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates purine nucleotide biosynthetic process.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete positive regulation of cellular alcohol catabolic process by transcription from RNA polymerase II promoter (GO:0100037)
Namespace: biological_process
Definition: OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates cellular alcohol catabolic process.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete regulation of cellular response to oxidative stress by transcription from RNA polymerase II promoter (GO:0100038)
Namespace: biological_process
Definition: OBSOLETE. Any transcription from RNA polymerase II promoter process that regulates cellular response to oxidative stress.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete regulation of pyrimidine nucleotide biosynthetic process by transcription from RNA polymerase II promoter (GO:0100039)
Namespace: biological_process
Definition: OBSOLETE. Any transcription from RNA polymerase II promoter process that regulates pyrimidine nucleotide biosynthetic process.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete negative regulation of invasive growth in response to glucose limitation by transcription from RNA polymerase II promoter (GO:0100040)
Namespace: biological_process
Definition: OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates invasive growth in response to glucose limitation.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete positive regulation of pseudohyphal growth by transcription from RNA polymerase II promoter (GO:0100041)
Namespace: biological_process
Definition: OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates pseudohyphal growth.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete negative regulation of pseudohyphal growth by transcription from RNA polymerase II promoter (GO:0100042)
Namespace: biological_process
Definition: OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates pseudohyphal growth.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete negative regulation of cellular response to alkaline pH by transcription from RNA polymerase II promoter (GO:0100043)
Namespace: biological_process
Definition: OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates cellular response to alkaline pH.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete negative regulation of cellular hyperosmotic salinity response by transcription from RNA polymerase II promoter (GO:0100044)
Namespace: biological_process
Definition: OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates cellular hyperosmotic salinity response.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete negative regulation of arginine catabolic process by transcription from RNA polymerase II promoter (GO:0100045)
Namespace: biological_process
Definition: OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates arginine catabolic process.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete positive regulation of arginine biosynthetic process by transcription from RNA polymerase II promoter (GO:0100046)
Namespace: biological_process
Definition: OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates arginine biosynthetic process.
Comment: GO:0100046
obsolete negative regulation of inositol biosynthetic process by transcription from RNA polymerase II promoter (GO:0100047)
Namespace: biological_process
Definition: OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates inositol biosynthetic process.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete positive regulation of phosphatidylcholine biosynthetic process by transcription from RNA polymerase II promoter (GO:0100048)
Namespace: biological_process
Definition: OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates phosphatidylcholine biosynthetic process.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete negative regulation of phosphatidylcholine biosynthetic process by transcription from RNA polymerase II promoter (GO:0100049)
Namespace: biological_process
Definition: OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates phosphatidylcholine biosynthetic process.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete negative regulation of mating type switching by transcription from RNA polymerase II promoter (GO:0100050)
Namespace: biological_process
Definition: OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates mating type switching.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete positive regulation of meiotic nuclear division by transcription from RNA polymerase II promoter (GO:0100051)
Namespace: biological_process
Definition: OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates meiotic nuclear division.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete negative regulation of G1/S transition of mitotic cell cycle by transcription from RNA polymerase II promoter (GO:0100052)
Namespace: biological_process
Definition: OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates G1/S transition of mitotic cell cycle.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete positive regulation of sulfate assimilation by transcription from RNA polymerase II promoter (GO:0100053)
Namespace: biological_process
Definition: OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates sulfate assimilation.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete positive regulation of phosphatidylserine biosynthetic process by transcription from RNA polymerase II promoter (GO:0100055)
Namespace: biological_process
Definition: OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates phosphatidylserine biosynthetic process.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete negative regulation of phosphatidylserine biosynthetic process by transcription from RNA polymerase II promoter (GO:0100056)
Namespace: biological_process
Definition: OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates phosphatidylserine biosynthetic process.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete positive regulation of phenotypic switching by transcription from RNA polymerase II promoter (GO:0100058)
Namespace: biological_process
Definition: OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates phenotypic switching.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete negative regulation of phenotypic switching by transcription from RNA polymerase II promoter (GO:0100059)
Namespace: biological_process
Definition: OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates phenotypic switching.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete negative regulation of SREBP signaling pathway by DNA binding (GO:0100060)
Namespace: molecular_function
Definition: OBSOLETE. Any DNA binding that negatively regulates SREBP signaling pathway.
Comment: The reason for obsoletion is that this term should be represented by a GO-CAM model.
obsolete negative regulation of SREBP signaling pathway by transcription factor catabolic process (GO:0100061)
Namespace: biological_process
Definition: OBSOLETE. Any transcription factor catabolic process process that negatively regulates SREBP signaling pathway.
Comment: The reason for obsoletion is that this term should be represented by a GO-CAM model.
obsolete positive regulation of SREBP signaling pathway by transcription factor catabolic process (GO:0100062)
Namespace: biological_process
Definition: OBSOLETE. Any transcription factor catabolic process process that positively_regulates SREBP signaling pathway.
Comment: The reason for obsoletion is that this term should be represented by a GO-CAM model.
obsolete negative regulation of filamentous growth of a population of unicellular organisms in response to starvation by transcription from RNA polymerase II promoter (GO:0100064)
Namespace: biological_process
Definition: OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates filamentous growth of a population of unicellular organisms in response to starvation.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete negative regulation of leucine import by transcription from RNA polymerase II promoter (GO:0100065)
Namespace: biological_process
Definition: OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates leucine import.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete negative regulation of induction of conjugation with cellular fusion by transcription from RNA polymerase II promoter (GO:0100066)
Namespace: biological_process
Definition: OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates induction of conjugation with cellular fusion.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete positive regulation of spinal cord association neuron differentiation by canonical Wnt signaling pathway (GO:0100067)
Namespace: biological_process
Definition: OBSOLETE. Any canonical Wnt signaling pathway process that positively_regulates spinal cord association neuron differentiation.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete positive regulation of pyrimidine-containing compound salvage by transcription from RNA polymerase II promoter (GO:0100068)
Namespace: biological_process
Definition: OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates pyrimidine-containing compound salvage.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete negative regulation of neuron apoptotic process by transcription from RNA polymerase II promoter (GO:0100069)
Namespace: biological_process
Definition: OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates neuron apoptotic process.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete regulation of fatty acid biosynthetic process by transcription from RNA polymerase II promoter (GO:0100070)
Namespace: biological_process
Definition: OBSOLETE. Any transcription from RNA polymerase II promoter process that regulates fatty acid biosynthetic process.
Comment: This term was obsoleted because it represents a GO-CAM model.
ficolin-1-rich granule (GO:0101002)
Namespace: cellular_component
Definition: Highly exocytosable gelatinase-poor granules found in neutrophils and rich in ficolin-1. Ficolin-1 is released from neutrophil granules by stimulation with fMLP or PMA, and the majority becomes associated with the surface membrane of the cells and can be detected by flow cytometry.
Synonyms: ficolin granule; ficolin-1 rich granule
cytolytic granule membrane (GO:0101004)
Namespace: cellular_component
Definition: The lipid bilayer surrounding the cytolytic granule.
deubiquitinase activity (GO:0101005)
Namespace: molecular_function
Definition: An isopeptidase activity that cleaves ubiquitin from a target protein to which it is conjugated.
Synonyms: ubiquitinyl hydrolase activity
Comment: There are two main classes of deubiquitinating enzymes: cysteine proteases (i.e., thiol dependent) and metalloproteases.
protein histidine phosphatase activity (GO:0101006)
Namespace: molecular_function
Definition: Catalysis of the reaction: protein histidine phosphate + H2O = protein histidine + phosphate.
Synonyms: phosphohistidine phosphatase activity
Comment: This eukaryotic enzyme dephosphorylates phosphorylated histidine residues within proteins and peptides. The enzyme acts on phosphate groups attached to both the pros- (RHEA:47964) and tele- (RHEA:47960) nitrogen atoms, but the pros- position is somewhat preferred (by a factor of two at the most) (EC:3.9.1.3).
obsolete negative regulation of transcription from RNA polymerase II promoter in response to salt stress (GO:0101007)
Namespace: biological_process
Definition: OBSOLETE. Any process that decreases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a stimulus indicating the organism is under salt stress. The stress is usually an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete negative regulation of transcription from RNA polymerase II promoter in response to increased salt (GO:0101008)
Namespace: biological_process
Definition: OBSOLETE. Any process that decreases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of detection of, or exposure to, an increase in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
Comment: This term was obsoleted because it represents a GO-CAM model.
[isocitrate dehydrogenase (NADP+)] phosphatase activity (GO:0101014)
Namespace: molecular_function
Definition: Catalysis of the reaction: [isocitrate dehydrogenase] phosphate + H2O = [isocitrate dehydrogenase] + phosphate.
Synonyms: isocitrate dehydrogenase kinase/phosphatase activity
FMN-binding domain binding (GO:0101016)
Namespace: molecular_function
Definition: Binding to the FMN-binding domain of a protein.
regulation of mitotic DNA replication initiation from late origin (GO:0101017)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of firing from a late origin of replication involved in mitotic DNA replication.
Synonyms: regulation of late replication origin firing
negative regulation of mitotic DNA replication initiation from late origin (GO:0101018)
Namespace: biological_process
Definition: Any process that stops, prevents or reduces the frequency, rate or extent of firing from a late origin of replication involved in mitotic DNA replication.
Synonyms: negative regulation of late replication origin firing
nucleolar exosome (RNase complex) (GO:0101019)
Namespace: cellular_component
Definition: A ribonuclease complex that has 3-prime to 5-prime distributive hydrolytic exoribonuclease activity and in some taxa (e.g. yeast) endoribonuclease activity, producing 5-prime-phosphomonoesters. Participates in a multitude of cellular RNA processing and degradation events preventing nuclear export and/or translation of aberrant RNAs. Restricted to processing linear and circular single-stranded RNAs (ssRNA) only. RNAs with complex secondary structures may have to be unwound or pre-processed by co-factors prior to entering the complex, esp if the 3-prime end is structured.
estrogen 16-alpha-hydroxylase activity (GO:0101020)
Namespace: molecular_function
Definition: Catalysis of the reaction: estrogen + reduced [NADPH--hemoprotein reductase] + O2 = 16-alpha-hydroxyestrogen + oxidized [NADPH--hemoprotein reductase] + H2O.
Synonyms: oestrogen 16-alpha-hydroxylase activity
estrogen 2-hydroxylase activity (GO:0101021)
Namespace: molecular_function
Definition: Catalysis of the reaction: estrogen + reduced [NADPH--hemoprotein reductase] + O2 = 2-hydroxyestrogen + H+ + H2O + oxidized [NADPH--hemoprotein reductase].
Synonyms: oestrogen 2-hydroxylase activity
vascular endothelial cell proliferation (GO:0101023)
Namespace: biological_process
Definition: The multiplication or reproduction of blood vessel endothelial cells, resulting in the expansion of a cell population.
mitotic nuclear membrane organization (GO:0101024)
Namespace: biological_process
Definition: A mitotic cell cycle process which results in the assembly, arrangement, or disassembly of the nuclear inner or outer membrane during mitosis.
Synonyms: nuclear membrane organization involved in mitotic nuclear division
Comment: This process only occurs in organisms which undergo 'closed mitosis' without nuclear breakdown.
nuclear membrane biogenesis (GO:0101025)
Namespace: biological_process
Definition: The process in which a nuclear membrane is synthesized, aggregates, and bonds together.
mitotic nuclear membrane biogenesis (GO:0101026)
Namespace: biological_process
Definition: A process in which the nuclear inner or outer membrane is synthesized, aggregates, and bonds together during mitotic nuclear division.
Synonyms: nuclear membrane biogenesis involved in mitotic nuclear division
optical nerve axon regeneration (GO:0101027)
Namespace: biological_process
Definition: The regrowth of axons of the optical nerve following their loss or damage.
obsolete positive regulation of liquid surface tension (GO:0101028)
Namespace: biological_process
Definition: OBSOLETE. Any process that activates or increases the surface tension of a liquid.
Synonyms: positive regulation of surface tension of a liquid
Comment: Never been used.
obsolete negative regulation of liquid surface tension (GO:0101029)
Namespace: biological_process
Definition: OBSOLETE. Any process that prevents or reduces the surface tension of a liquid.
Synonyms: negative regulation of surface tension of a liquid
Comment: Never been used.
obsolete tRNA-guanine transglycosylation (GO:0101030)
Namespace: biological_process
Definition: OBSOLETE. The modification of a tRNA anticodon loop by replacing guanine with queuonine. Reaction is tRNA guanine + queuine = tRNA queuine + guanine.
Comment: The reason for obsoletion is that this term represents a molecular function.
isoleucine N-monooxygenase (oxime forming) activity (GO:0102001)
Namespace: molecular_function
Definition: Catalysis of the reaction: L-isoleucine + 2 O2 + 2 NADPH(4-) + 2 H+ = (E)-2-methylbutanal oxime + 2 NADP(3-) + carbon dioxide + 3 H2O.
valine N-monooxygenase (oxime forming) activity (GO:0102002)
Namespace: molecular_function
Definition: Catalysis of the reaction: L-valine + 2 O2 + 2 NADPH(4-) + 2 H+ = (E)-2-methylpropanal oxime + 2 NADP(3-) + carbon dioxide + 3 H2O.
acyl-lipid (11-3)-desaturase activity (GO:0102003)
Namespace: molecular_function
Definition: Catalysis of the reaction: an (11Z,14Z)-icosadienoyl-containing glycerolipid + 2 Fe(II)-[cytochrome b5] + 2 H+ + O2 = an (8Z,11Z,14Z)-icosatrienoyl-containing glycerolipid + 2 Fe(III)-[cytochrome b5] + 2 H2O or an (11Z,14Z,17Z)-icosatrienoyl-containing glycerolipid + 2 Fe(II)-[cytochrome b5] + 2 H+ + O2 = an (8Z,11Z,14Z,17Z)-eicosatetraenoyl-containing glycerolipid + 2 Fe(III)-[cytochrome b5] + 2 H2O.
Synonyms: acyl-lipid 8-desaturase; Delta(8)-desaturase; Delta8-sphingolipid desaturase activity
obsolete 2-octaprenyl-6-hydroxyphenol methylase activity (GO:0102004)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: 3-(all-trans-octaprenyl)benzene-1,2-diol + S-adenosyl-L-methionine = H+ + 2-methoxy-6-(all-trans-octaprenyl)phenol + S-adenosyl-L-homocysteine.
Comment: This term was obsoleted because it is not known to be catalyzed by any gene product.
obsolete 4-methyl-2-oxopentanoate dehydrogenase activity (GO:0102006)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: 4-methyl-2-oxopentanoate + coenzyme A(4-) + NAD(1-) = isovaleryl-CoA(4-) + carbon dioxide + NADH(2-).
Comment: The reason for obsoletion is that this term is equivalent to branched-chain alpha-keto acid dehydrogenase activity.
acyl-L-homoserine-lactone lactonohydrolase activity (GO:0102007)
Namespace: molecular_function
Definition: Catalysis of the reaction: H2O + an N-acyl-L-homoserine lactone = H+ + an N-acyl-L-homoserine.
ATPase-coupled L-glutamate tranmembrane transporter activity (GO:0102013)
Namespace: molecular_function
Definition: Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: L-glutamate(out) + ATP + H2O = L-glutamate(in) + ADP + phosphate + H+.
Synonyms: L-glutamate-importing ATPase activity
beta-D-galactose-importing ATPase activity (GO:0102014)
Namespace: molecular_function
Definition: Catalysis of the reaction: ATP(4-) + beta-D-galactoside + H2O = ADP(3-) + hydrogenphosphate + beta-D-galactoside + H+.
ABC-type thiosulfate transporter activity (GO:0102025)
Namespace: molecular_function
Definition: Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + thiosulfate(out) = ADP + phosphate + thiosulfate(in).
Synonyms: ATPase-coupled thiosulfate transmembrane transporter activity; thiosulfate transmembrane-transporting ATPase activity; thiosulphate ABC transporter activity
obsolete S-adenosylmethionine:2-demethylquinol-8 methyltransferase activity (GO:0102027)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: 2-demethylmenaquinol-8 + S-adenosyl-L-methionine = menaquinol-8 + H+ + S-adenosyl-L-homocysteine.
Comment: This term was obsoleted because it represents a specific substrate of demethylmenaquinone methyltransferase activity ; GO:0043770.
obsolete cystathionine gamma-synthase activity (acts on O-phosphohomoserine) (GO:0102028)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: L-cysteine + O-phosphonato-L-homoserine = L-cystathionine + hydrogenphosphate.
Comment: The reason for obsoletion is that this term is equivalent to GO:0003962 cystathionine gamma-synthase activity, with the same EC cross reference.
D-lactate dehydrogenase (quinone) activity (GO:0102029)
Namespace: molecular_function
Definition: Catalysis of the reaction: (R)-lactate + an ubiquinone = pyruvate + an ubiquinol.
Synonyms: D-lactate dehydrogenase activity
obsolete dTDP-L-rhamnose synthetase activity (GO:0102030)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: dTDP-6-deoxy-beta-L-mannose + NAD+ = dTDP-4-dehydro-6-deoxy-alpha-D-glucose + NADH + H+.
Comment: This term was obsoleted because there is no evidence that this activity exists.