LiteFold/GO huggingface dataset:
positive regulation of ER to Golgi vesicle-mediated transport (GO:1902953)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of ER to Golgi vesicle-mediated transport.
Synonyms: activation of endoplasmic reticulum to Golgi transport; activation of endoplasmic reticulum to Golgi vesicle-mediated transport; activation of ER to Golgi transport; activation of ER to Golgi vesicle-mediated transport; activation of rough endoplasmic reticulum to cis-Golgi transport; activation of rough endoplasmic reticulum to cis-Golgi vesicle-mediated transport; activation of rough ER to cis-Golgi transport; activation of rough ER to cis-Golgi vesicle-mediated transport; positive regulation of endoplasmic reticulum to Golgi transport; positive regulation of endoplasmic reticulum to Golgi vesicle-mediated transport; positive regulation of ER to Golgi transport; positive regulation of rough endoplasmic reticulum to cis-Golgi transport; positive regulation of rough endoplasmic reticulum to cis-Golgi vesicle-mediated transport; positive regulation of rough ER to cis-Golgi transport; positive regulation of rough ER to cis-Golgi vesicle-mediated transport; up regulation of endoplasmic reticulum to Golgi transport; up regulation of endoplasmic reticulum to Golgi vesicle-mediated transport; up regulation of ER to Golgi transport; up regulation of ER to Golgi vesicle-mediated transport; up regulation of rough endoplasmic reticulum to cis-Golgi transport; up regulation of rough endoplasmic reticulum to cis-Golgi vesicle-mediated transport; up regulation of rough ER to cis-Golgi transport; up regulation of rough ER to cis-Golgi vesicle-mediated transport; up-regulation of endoplasmic reticulum to Golgi transport; up-regulation of endoplasmic reticulum to Golgi vesicle-mediated transport; up-regulation of ER to Golgi transport; up-regulation of ER to Golgi vesicle-mediated transport; up-regulation of rough endoplasmic reticulum to cis-Golgi transport; up-regulation of rough endoplasmic reticulum to cis-Golgi vesicle-mediated transport; up-regulation of rough ER to cis-Golgi transport; up-regulation of rough ER to cis-Golgi vesicle-mediated transport; upregulation of endoplasmic reticulum to Golgi transport; upregulation of endoplasmic reticulum to Golgi vesicle-mediated transport; upregulation of ER to Golgi transport; upregulation of ER to Golgi vesicle-mediated transport; upregulation of rough endoplasmic reticulum to cis-Golgi transport; upregulation of rough endoplasmic reticulum to cis-Golgi vesicle-mediated transport; upregulation of rough ER to cis-Golgi transport; upregulation of rough ER to cis-Golgi vesicle-mediated transport
obsolete regulation of early endosome to recycling endosome transport (GO:1902954)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of early endosome to recycling endosome transport.
Comment: This term is described by another GO term
obsolete positive regulation of early endosome to recycling endosome transport (GO:1902955)
Namespace: biological_process
Definition: OBSOLETE. Any process that activates or increases the frequency, rate or extent of early endosome to recycling endosome transport.
Comment: This term is described by another GO term.
regulation of mitochondrial electron transport, NADH to ubiquinone (GO:1902956)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of mitochondrial electron transport, NADH to ubiquinone.
Synonyms: regulation of complex I (NADH to ubiquinone); regulation of oxidative phosphorylation, NADH to ubiquinone
negative regulation of mitochondrial electron transport, NADH to ubiquinone (GO:1902957)
Namespace: biological_process
Definition: Any process that stops, prevents or reduces the frequency, rate or extent of mitochondrial electron transport, NADH to ubiquinone.
Synonyms: down regulation of complex I (NADH to ubiquinone); down regulation of mitochondrial electron transport, NADH to ubiquinone; down regulation of oxidative phosphorylation, NADH to ubiquinone; down-regulation of complex I (NADH to ubiquinone); down-regulation of mitochondrial electron transport, NADH to ubiquinone; down-regulation of oxidative phosphorylation, NADH to ubiquinone; downregulation of complex I (NADH to ubiquinone); downregulation of mitochondrial electron transport, NADH to ubiquinone; downregulation of oxidative phosphorylation, NADH to ubiquinone; inhibition of complex I (NADH to ubiquinone); inhibition of mitochondrial electron transport, NADH to ubiquinone; inhibition of oxidative phosphorylation, NADH to ubiquinone; negative regulation of complex I (NADH to ubiquinone); negative regulation of oxidative phosphorylation, NADH to ubiquinone
positive regulation of mitochondrial electron transport, NADH to ubiquinone (GO:1902958)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of mitochondrial electron transport, NADH to ubiquinone.
Synonyms: activation of complex I (NADH to ubiquinone); activation of mitochondrial electron transport, NADH to ubiquinone; activation of oxidative phosphorylation, NADH to ubiquinone; positive regulation of complex I (NADH to ubiquinone); positive regulation of oxidative phosphorylation, NADH to ubiquinone; up regulation of complex I (NADH to ubiquinone); up regulation of mitochondrial electron transport, NADH to ubiquinone; up regulation of oxidative phosphorylation, NADH to ubiquinone; up-regulation of complex I (NADH to ubiquinone); up-regulation of mitochondrial electron transport, NADH to ubiquinone; up-regulation of oxidative phosphorylation, NADH to ubiquinone; upregulation of complex I (NADH to ubiquinone); upregulation of mitochondrial electron transport, NADH to ubiquinone; upregulation of oxidative phosphorylation, NADH to ubiquinone
obsolete regulation of metalloendopeptidase activity involved in amyloid precursor protein catabolic process (GO:1902962)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of metalloendopeptidase activity involved in amyloid precursor protein catabolic process.
Synonyms: regulation of metalloendopeptidase activity involved in amyloid precursor protein breakdown; regulation of metalloendopeptidase activity involved in amyloid precursor protein catabolism; regulation of metalloendopeptidase activity involved in amyloid precursor protein degradation; regulation of metalloendopeptidase activity involved in APP catabolic process; regulation of metalloendopeptidase activity involved in APP catabolism; regulation of metalloendoprotease activity involved in amyloid precursor protein breakdown; regulation of metalloendoprotease activity involved in amyloid precursor protein catabolic process; regulation of metalloendoprotease activity involved in amyloid precursor protein catabolism; regulation of metalloendoprotease activity involved in amyloid precursor protein degradation; regulation of metalloendoprotease activity involved in APP catabolic process; regulation of metalloendoprotease activity involved in APP catabolism; regulation of metalloendoproteinase activity involved in amyloid precursor protein breakdown; regulation of metalloendoproteinase activity involved in amyloid precursor protein catabolic process; regulation of metalloendoproteinase activity involved in amyloid precursor protein catabolism; regulation of metalloendoproteinase activity involved in amyloid precursor protein degradation; regulation of metalloendoproteinase activity involved in APP catabolic process; regulation of metalloendoproteinase activity involved in APP catabolism
Comment: This term was obsoleted because it represents a molecular function.
regulation of protein localization to early endosome (GO:1902965)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of protein localization to early endosome.
Synonyms: regulation of protein localisation in early endosome; regulation of protein localisation to early endosome; regulation of protein localization in early endosome
positive regulation of protein localization to early endosome (GO:1902966)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of protein localization to early endosome.
Synonyms: activation of protein localisation in early endosome; activation of protein localisation to early endosome; activation of protein localization in early endosome; activation of protein localization to early endosome; positive regulation of protein localisation in early endosome; positive regulation of protein localisation to early endosome; positive regulation of protein localization in early endosome; up regulation of protein localisation in early endosome; up regulation of protein localisation to early endosome; up regulation of protein localization in early endosome; up regulation of protein localization to early endosome; up-regulation of protein localisation in early endosome; up-regulation of protein localisation to early endosome; up-regulation of protein localization in early endosome; up-regulation of protein localization to early endosome; upregulation of protein localisation in early endosome; upregulation of protein localisation to early endosome; upregulation of protein localization in early endosome; upregulation of protein localization to early endosome
protein localization to mitotic spindle midzone (GO:1902967)
Namespace: biological_process
Definition: A process in which a protein is transported to, or maintained in, a location within a mitotic spindle midzone.
Synonyms: protein localisation in mitotic spindle midzone; protein localisation to mitotic spindle midzone; protein localization in mitotic spindle midzone
mitotic DNA replication (GO:1902969)
Namespace: biological_process
Definition: Any nuclear DNA replication that is involved in a mitotic cell cycle.
Synonyms: DNA replication during S phase involved in mitotic cell cycle; DNA replication involved in S phase involved in mitotic cell cycle; DNA replication involved in S-phase involved in mitotic cell cycle; mitotic cell cycle DNA replication; mitotic nuclear cell cycle DNA replication; nuclear cell cycle DNA replication involved in mitotic cell cycle
obsolete mitotic DNA replication DNA duplex unwinding (GO:1902971)
Namespace: biological_process
Definition: OBSOLETE. Any DNA duplex unwinding involved in mitotic cell cycle DNA replication.
Synonyms: DNA duplex unwinding involved in mitotic cell cycle DNA replication; DNA duplex unwinding involved in mitotic DNA replication
Comment: The reason for obsoletion is that the term represents a molecular function.
obsolete premeiotic DNA replication DNA ligation (GO:1902972)
Namespace: biological_process
Definition: OBSOLETE. Any DNA ligation involved in meiotic cell cycle DNA replication.
Synonyms: DNA ligation involved in meiotic cell cycle DNA replication; DNA ligation involved in meiotic DNA replication
Comment: The reason for obsoletion is that the term represents a molecular function.
obsolete mitotic DNA replication DNA ligation (GO:1902973)
Namespace: biological_process
Definition: OBSOLETE. Any DNA ligation involved in mitotic cell cycle DNA replication.
Synonyms: DNA ligation involved in mitotic cell cycle DNA replication; DNA ligation involved in mitotic DNA replication
Comment: The reason for obsoletion is that the term represents a molecular function.
meiotic DNA replication initiation (GO:1902974)
Namespace: biological_process
Definition: Any DNA replication initiation involved in meiotic cell cycle DNA replication.
Synonyms: DNA replication initiation involved in meiotic cell cycle DNA replication; DNA replication initiation involved in meiotic DNA replication; initiation of meiotic DNA synthesis; initiation of premeiotic DNA replication; initiation of premeiotic DNA synthesis; premeiotic DNA replication initiation
mitotic DNA replication initiation (GO:1902975)
Namespace: biological_process
Definition: Any DNA replication initiation involved in mitotic cell cycle DNA replication.
Synonyms: DNA replication initiation involved in mitotic cell cycle DNA replication
premeiotic DNA replication preinitiation complex assembly (GO:1902976)
Namespace: biological_process
Definition: Any DNA replication preinitiation complex assembly that is involved in meiotic cell cycle.
Synonyms: DNA replication preinitiation complex formation involved in meiotic cell cycle; pre-IC complex assembly involved in meiotic cell cycle
mitotic DNA replication preinitiation complex assembly (GO:1902977)
Namespace: biological_process
Definition: Any DNA replication preinitiation complex assembly that is involved in mitotic cell cycle.
Synonyms: DNA replication preinitiation complex formation involved in mitotic cell cycle; pre-IC complex assembly involved in mitotic cell cycle
premeiotic DNA replication termination (GO:1902978)
Namespace: biological_process
Definition: Any DNA replication termination involved in meiotic cell cycle DNA replication.
Synonyms: DNA replication termination involved in meiotic cell cycle DNA replication; DNA replication termination involved in meiotic DNA replication
obsolete synthesis of RNA primer involved in premeiotic DNA replication (GO:1902980)
Namespace: biological_process
Definition: OBSOLETE. Any synthesis of RNA primer involved in meiotic cell cycle DNA replication.
Synonyms: synthesis of RNA primer involved in meiotic cell cycle DNA replication
Comment: The reason for obsoletion is that these are precomposed terms that should be captured as GO-CAM models.
obsolete synthesis of RNA primer involved in mitotic DNA replication (GO:1902981)
Namespace: biological_process
Definition: OBSOLETE. Any synthesis of RNA primer involved in mitotic cell cycle DNA replication.
Synonyms: synthesis of RNA primer involved in mitotic cell cycle DNA replication
Comment: The reason for obsoletion is that these are precomposed terms that should be captured as GO-CAM models.
obsolete DNA strand elongation involved in premeiotic DNA replication (GO:1902982)
Namespace: biological_process
Definition: OBSOLETE. Any DNA strand elongation involved in meiotic cell cycle DNA replication.
Synonyms: DNA strand elongation involved in meiotic cell cycle DNA replication
Comment: This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.
DNA strand elongation involved in mitotic DNA replication (GO:1902983)
Namespace: biological_process
Definition: Any DNA strand elongation involved in mitotic cell cycle DNA replication.
Synonyms: DNA strand elongation involved in mitotic cell cycle DNA replication
obsolete pre-replicative complex assembly involved in premeiotic DNA replication (GO:1902984)
Namespace: biological_process
Definition: OBSOLETE. Any pre-replicative complex assembly involved in meiotic cell cycle DNA replication.
Synonyms: nuclear pre-replicative complex assembly involved in meiotic cell cycle; pre-RC complex assembly involved in meiosis; pre-replicative complex assembly involved in meiosis; pre-replicative complex assembly involved in meiotic cell cycle DNA replication; pre-replicative complex formation involved in meiosis
Comment: This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.
mitotic pre-replicative complex assembly (GO:1902985)
Namespace: biological_process
Definition: Any pre-replicative complex assembly involved in mitotic cell cycle DNA replication.
Synonyms: nuclear pre-replicative complex assembly involved in mitotic cell cycle; pre-replicative complex assembly involved in mitotic cell cycle DNA replication
regulation of lysine biosynthetic process via aminoadipic acid (GO:1902986)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of lysine biosynthetic process via aminoadipic acid.
Synonyms: regulation of lysine anabolism via aminoadipic acid; regulation of lysine biosynthesis, aminoadipic acid pathway; regulation of lysine biosynthesis, aminoadipic pathway; regulation of lysine biosynthetic process, aminoadipic acid pathway; regulation of lysine biosynthetic process, aminoadipic pathway; regulation of lysine formation via aminoadipic acid; regulation of lysine synthesis via aminoadipic acid
obsolete negative regulation of lysine biosynthetic process via aminoadipic acid (GO:1902987)
Namespace: biological_process
Definition: OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of lysine biosynthetic process via aminoadipic acid.
Synonyms: down regulation of lysine anabolism via aminoadipic acid; down regulation of lysine biosynthesis, aminoadipic acid pathway; down regulation of lysine biosynthesis, aminoadipic pathway; down regulation of lysine biosynthetic process via aminoadipic acid; down regulation of lysine biosynthetic process, aminoadipic acid pathway; down regulation of lysine biosynthetic process, aminoadipic pathway; down regulation of lysine formation via aminoadipic acid; down regulation of lysine synthesis via aminoadipic acid; down-regulation of lysine anabolism via aminoadipic acid; down-regulation of lysine biosynthesis, aminoadipic acid pathway; down-regulation of lysine biosynthesis, aminoadipic pathway; down-regulation of lysine biosynthetic process via aminoadipic acid; down-regulation of lysine biosynthetic process, aminoadipic acid pathway; down-regulation of lysine biosynthetic process, aminoadipic pathway; down-regulation of lysine formation via aminoadipic acid; down-regulation of lysine synthesis via aminoadipic acid; downregulation of lysine anabolism via aminoadipic acid; downregulation of lysine biosynthesis, aminoadipic acid pathway; downregulation of lysine biosynthesis, aminoadipic pathway; downregulation of lysine biosynthetic process via aminoadipic acid; downregulation of lysine biosynthetic process, aminoadipic acid pathway; downregulation of lysine biosynthetic process, aminoadipic pathway; downregulation of lysine formation via aminoadipic acid; downregulation of lysine synthesis via aminoadipic acid; inhibition of lysine anabolism via aminoadipic acid; inhibition of lysine biosynthesis, aminoadipic acid pathway; inhibition of lysine biosynthesis, aminoadipic pathway; inhibition of lysine biosynthetic process via aminoadipic acid; inhibition of lysine biosynthetic process, aminoadipic acid pathway; inhibition of lysine biosynthetic process, aminoadipic pathway; inhibition of lysine formation via aminoadipic acid; inhibition of lysine synthesis via aminoadipic acid; negative regulation of lysine anabolism via aminoadipic acid; negative regulation of lysine biosynthesis, aminoadipic acid pathway; negative regulation of lysine biosynthesis, aminoadipic pathway; negative regulation of lysine biosynthetic process, aminoadipic acid pathway; negative regulation of lysine biosynthetic process, aminoadipic pathway; negative regulation of lysine formation via aminoadipic acid; negative regulation of lysine synthesis via aminoadipic acid
Comment: The reason for obsoletion is that this term was created unnecessarily.
neurofibrillary tangle assembly (GO:1902988)
Namespace: biological_process
Definition: The aggregation, arrangement and bonding together of a set of components to form a neurofibrillary tangle.
Synonyms: flame-shaped neurofibrillary tangle assembly; flame-shaped neurofibrillary tangle formation; neurofibrillary tangle formation; star-shaped neurofibrillary tangle assembly; star-shaped neurofibrillary tangle formation
Comment: Neurofibrillary tangles have been found in aging population; their formation is increased in Alzheimer's disease patients (and in other neurological diseases) compared to normal controls (see PMID:848276 and PMID:8584267).
meiotic telomere maintenance via semi-conservative replication (GO:1902989)
Namespace: biological_process
Definition: Any telomere maintenance via semi-conservative replication that is involved in meiotic cell cycle.
Synonyms: equal telomere replication involved in meiotic cell cycle; telomeric fork progression involved in meiotic cell cycle; telomeric replication fork progression involved in meiotic cell cycle
mitotic telomere maintenance via semi-conservative replication (GO:1902990)
Namespace: biological_process
Definition: Any telomere maintenance via semi-conservative replication that is involved in mitotic cell cycle.
Synonyms: equal telomere replication involved in mitotic cell cycle; telomeric fork progression involved in mitotic cell cycle; telomeric replication fork progression involved in mitotic cell cycle
regulation of amyloid precursor protein catabolic process (GO:1902991)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of amyloid precursor protein catabolic process.
Synonyms: regulation of amyloid precursor protein breakdown; regulation of amyloid precursor protein catabolism; regulation of amyloid precursor protein degradation; regulation of APP catabolic process; regulation of APP catabolism
Comment: An example of this is human FKBP1A/12 (UniProt symbol P62942) in PMID:24499793 (inferred from direct assay).
negative regulation of amyloid precursor protein catabolic process (GO:1902992)
Namespace: biological_process
Definition: Any process that stops, prevents or reduces the frequency, rate or extent of amyloid precursor protein catabolic process.
Synonyms: down regulation of amyloid precursor protein breakdown; down regulation of amyloid precursor protein catabolic process; down regulation of amyloid precursor protein catabolism; down regulation of amyloid precursor protein degradation; down regulation of APP catabolic process; down regulation of APP catabolism; down-regulation of amyloid precursor protein breakdown; down-regulation of amyloid precursor protein catabolic process; down-regulation of amyloid precursor protein catabolism; down-regulation of amyloid precursor protein degradation; down-regulation of APP catabolic process; down-regulation of APP catabolism; downregulation of amyloid precursor protein breakdown; downregulation of amyloid precursor protein catabolic process; downregulation of amyloid precursor protein catabolism; downregulation of amyloid precursor protein degradation; downregulation of APP catabolic process; downregulation of APP catabolism; inhibition of amyloid precursor protein breakdown; inhibition of amyloid precursor protein catabolic process; inhibition of amyloid precursor protein catabolism; inhibition of amyloid precursor protein degradation; inhibition of APP catabolic process; inhibition of APP catabolism; negative regulation of amyloid precursor protein breakdown; negative regulation of amyloid precursor protein catabolism; negative regulation of amyloid precursor protein degradation; negative regulation of APP catabolic process; negative regulation of APP catabolism