LiteFold/GO huggingface dataset:
3'-phosphoadenylylselenate reductase activity (GO:0098624)
Namespace: molecular_function
Definition: Catalysis of the reaction: 3'-phosphoadenylylselenate + NADPH = adenosine 3',5'-bisphosphate + selenite + NADP+ + H+.
Synonyms: PAPSe reductase activity
methylselenol reductase activity (GO:0098625)
Namespace: molecular_function
Definition: Catalysis of the reaction: NADPH + H+ + CH3SeOH = NADP+ + CH3SeH + H2O.
methylseleninic acid reductase activity (GO:0098626)
Namespace: molecular_function
Definition: Catalysis of the reaction: NADPH + H+ + CH3SeO2H = NADP+ + CH3SeOH + H2O.
protein arginine phosphatase activity (GO:0098627)
Namespace: molecular_function
Definition: Catalysis of the reaction: phospho-L-arginyl-[protein] +H2O = L-arginyl-[protein] + phosphate.
peptidyl-N-phospho-arginine dephosphorylation (GO:0098628)
Namespace: biological_process
Definition: The removal of phosphate residues from peptidyl-N-phospho-arginine to form peptidyl-arginine.
trans-Golgi network membrane organization (GO:0098629)
Namespace: biological_process
Definition: A process which results in the assembly, arrangement of constituent parts, or disassembly of a trans-Golgi network membrane.
aggregation of unicellular organisms (GO:0098630)
Namespace: biological_process
Definition: The clustering together of unicellular organisms in suspension form aggregates.
Synonyms: aggregation of single cell organisms
cell adhesion mediator activity (GO:0098631)
Namespace: molecular_function
Definition: The binding by a cell-adhesion protein on a cell surface to an adhesion molecule on another cell surface or an external substrate, to mediate adhesion of the cell to the external substrate or to another cell.
Synonyms: cell adhesion molecule; protein binding involved in cell adhesion
cell-cell adhesion mediator activity (GO:0098632)
Namespace: molecular_function
Definition: The binding by a cell-adhesion protein on the cell surface to an extracellular component of a different cell, to mediate adhesion of the cell to another cell.
Synonyms: cell-cell adhesion molecule; protein binding involved in cell-cell adhesion
cell-matrix adhesion mediator activity (GO:0098634)
Namespace: molecular_function
Definition: The binding by a cell-adhesion protein on the cell surface to an extracellular matrix component, to mediate adhesion of the cell to the extracellular matrix.
Synonyms: cell-matrix adhesion molecule; protein binding involved in cell-matrix adhesion
protein complex involved in cell-cell adhesion (GO:0098635)
Namespace: cellular_component
Definition: Any protein complex that is capable of carrying out some part of the process of cell-cell adhesion.
protein complex involved in cell adhesion (GO:0098636)
Namespace: cellular_component
Definition: Any protein complex that is capable of carrying out some part of the process of cell adhesion to the cell matrix or to another cell.
Synonyms: cell adhesion complex
protein complex involved in cell-matrix adhesion (GO:0098637)
Namespace: cellular_component
Definition: Any protein complex that is capable of carrying out some part of the process of cell-matrix adhesion.
laminin binding involved in cell-matrix adhesion (GO:0098638)
Namespace: molecular_function
Definition: Any laminin protein binding that occurs as part of cell-matrix adhesion.
collagen binding involved in cell-matrix adhesion (GO:0098639)
Namespace: molecular_function
Definition: Any collagen binding that occurs as part of cell-matrix adhesion.
integrin binding involved in cell-matrix adhesion (GO:0098640)
Namespace: molecular_function
Definition: Any integrin binding that occurs as part of the process of cell-matrix adhesion.
cadherin binding involved in cell-cell adhesion (GO:0098641)
Namespace: molecular_function
Definition: Any cadherin binding that occurs as part of the process of cell-cell adhesion.
network-forming collagen trimer (GO:0098642)
Namespace: cellular_component
Definition: A collagen trimer that forms networks.
fibrillar collagen complex (GO:0098643)
Namespace: cellular_component
Definition: A supramolecular assembly of fibrillar collagen complexes in the form of a long fiber (fibril) with transverse striations (bands).
Synonyms: banded collagen fibril; fibrillar collagen
complex of collagen trimers (GO:0098644)
Namespace: cellular_component
Definition: A complex of collagen trimers such as a fibril or collagen network.
Synonyms: Supramolecular aggregate of collagen; Supramolecular collagen assembly
complex of network-forming collagens (GO:0098645)
Namespace: cellular_component
Definition: A supramolecular complex that consists of collagen triple helices associated to form a network.
Synonyms: collagen network
hexagonal collagen network (GO:0098646)
Namespace: cellular_component
Definition: A hexagonal-shaped collagen network formed by collagen type X trimer or collagen type VIII trimers. Collagen type X trimers are mostly found in the cartilage hyaline matrix, which is located in the interstitial area. Note that collagen type VIII has been found in the basement membrane, but the localization is not definitive.
Synonyms: basement membrane hexagonal collagen network; collagen hexagonal network; hexagonal collagen network of basement membrane; interstitial hexagonal collagen network
collagen beaded filament (GO:0098647)
Namespace: cellular_component
Definition: A supramolecular assembly of collagen trimers with a 'beads on a string'-like structure.
Synonyms: beads on a string
collagen anchoring fibril (GO:0098648)
Namespace: cellular_component
Definition: A specialised collagen fibril that functions as an anchor, binding to other collagen structures.
obsolete response to peptidyl-dipeptidase A inhibitor (GO:0098649)
Namespace: biological_process
Definition: OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptidyl-dipeptidase A inhibitor stimulus.
Synonyms: response to ACE inhibitor; response to angiotensin-converting enzyme inhibitor
Comment: This term was obsoleted because it does not represent a physiological process.
peptidyl-proline 4-dioxygenase binding (GO:0098650)
Namespace: molecular_function
Definition: Binding to a peptidyl-proline 4-dioxygenase.
obsolete collagen type VII anchoring fibril (GO:0098652)
Namespace: cellular_component
Definition: OBSOLETE. An antiparallel dimer of two collagen VII trimers, one end of which is embedded in the lamina densa while the other end attaches to banded collagen fibrils in the dermis.
Comment: This term was obsoleted because it was redundant with collagen type VII trimer ; GO:0005590.
centromere clustering (GO:0098653)
Namespace: biological_process
Definition: The process by which centromeres/kinetochores become localized to clusters.
Synonyms: kinetochore clustering
Comment: As inner kinetochores are an integral part of centromeres, we treat centromere and kinetochore clustering as the same process.
CENP-A recruiting complex (GO:0098654)
Namespace: cellular_component
Definition: A protein complex that includes Mis16(Yippee family) and/or Mis18 (WD repeat) subunits that is involved in the deposition of centromere specific (CENP-A containing) nucleosomes at the centromere.
Synonyms: MIS18 complex
monoatomic cation transmembrane transport (GO:0098655)
Namespace: biological_process
Definition: The process in which a monoatomic cation is transported across a membrane. Monatomic cations (also called simple cations) are positively charged ions consisting of exactly one atom.
Synonyms: ATP hydrolysis coupled cation transmembrane transport; cation transmembrane transport
monoatomic anion transmembrane transport (GO:0098656)
Namespace: biological_process
Definition: The process in which a monoatomic anion is transported across a membrane. Monatomic anions (also called simple anions) are negatively charged ions consisting of exactly one atom.
Synonyms: anion transmembrane transport; ATP hydrolysis coupled anion transmembrane transport
import into cell (GO:0098657)
Namespace: biological_process
Definition: The directed movement of some substance from outside of a cell into a cell. This may occur via transport across the plasma membrane or via endocytosis.
Synonyms: uptake
inorganic anion import across plasma membrane (GO:0098658)
Namespace: biological_process
Definition: The directed movement of inorganic anions from outside of a cell, across the plasma membrane and into the cytosol.
Synonyms: inorganic anion import into cell
inorganic cation import across plasma membrane (GO:0098659)
Namespace: biological_process
Definition: The directed movement of inorganic cations from outside of a cell, across the plasma membrane and into the cytosol.
Synonyms: inorganic cation import into cell
obsolete inorganic anion transmembrane transport (GO:0098661)
Namespace: biological_process
Definition: OBSOLETE. The process in which an inorganic anion is transported across a membrane.
Synonyms: inorganic anion membrane transport; transmembrane inorganic anion transport
Comment: Note that this term is not intended for use in annotating lateral movement within membranes. The reason for obsoletion is that this term was an unnecessary and confusing grouping term.
obsolete inorganic cation transmembrane transport (GO:0098662)
Namespace: biological_process
Definition: OBSOLETE. A process in which an inorganic cation is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
Synonyms: divalent inorganic cation transport; inorganic cation membrane transport; monovalent inorganic cation transport; transmembrane inorganic cation transport
Comment: Note that this term is not intended for use in annotating lateral movement within membranes. The reason for obsoletion is that this term was an unnecessary and confusing grouping term.
obsolete transmembrane transporter activity involved in import into cell (GO:0098663)
Namespace: molecular_function
Definition: OBSOLETE. Any transmembrane transporter activity that is involved in importing some substance into a cell.
Comment: The reason for obsoletion is that this terms partly represents the process "import into cell".
G protein-coupled serotonin receptor signaling pathway (GO:0098664)
Namespace: biological_process
Definition: The series of molecular signals generated as a consequence of a G protein-coupled serotonin receptor binding to one of its physiological ligands.
Synonyms: G-protein coupled serotonin receptor signaling pathway
serotonin receptor complex (GO:0098665)
Namespace: cellular_component
Definition: A protein complex that is capable of serotonin receptor activity.
Synonyms: 5-HT receptor complex; 5-hydroxytryptamine receptor complex; 5HT receptor complex
G protein-coupled serotonin receptor complex (GO:0098666)
Namespace: cellular_component
Definition: A protein complex that is capable of G protein-coupled serotonin receptor activity.
Synonyms: G-protein coupled serotonin receptor complex
superinfection exclusion (GO:0098669)
Namespace: biological_process
Definition: The process by which a preexisting viral infection prevents a secondary infection with the same or a closely related virus. Typically some aspect of viral entry is inhibited, but post entry mechanisms have also been documented.
adhesion receptor-mediated virion attachment to host cell (GO:0098671)
Namespace: biological_process
Definition: The process by which a virion attaches to a host cell by binding to a receptor on the host cell surface that does not mediate or trigger entry into the host cell. This binding is typically reversible and enhances significantly infectivity by concentrating the virus in the vicinity of its entry receptors, or bringing it to an organ in which its target cells are located.
Synonyms: viral attachment to host adhesion receptor
symbiont-mediated suppression of host DNA replication (GO:0098673)
Namespace: biological_process
Definition: Any process by which a virus inhibits DNA replication in its host cell. Some bacteriophages are known to do this, possibly as a way of increasing the pool of nucleotides available for virus replication.
Synonyms: inhibition of host DNA replication by virus
extrinsic component of neuronal dense core vesicle membrane (GO:0098674)
Namespace: cellular_component
Definition: The component of the neuronal dense core vesicle membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.
obsolete intrinsic component of neuronal dense core vesicle membrane (GO:0098675)
Namespace: cellular_component
Definition: OBSOLETE. The component of the neuronal dense core vesicle membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.
Synonyms: intrinsic to neuronal dense core granule membrane
Comment: This term was obsoleted because it represents protein topology, not a cellular component.
symbiont-mediated modulation of host virulence (GO:0098676)
Namespace: biological_process
Definition: A process by which a virus improves the virulence of its host for that host's respective host. Common in but not limited to bacteriophages; also occurs in phage-bearing bacteria infecting plants or animals for example. Mechanisms include the expression of factors that modulate a bacterial adhesion to a host cell, spread through host tissues, production of exotoxins or provide protection against host immune defenses.
Synonyms: modulation of host virulence by virus
virion maturation (GO:0098677)
Namespace: biological_process
Definition: Maturation of a virion after separation from the host cell. Not all viruses mature after separation. In those that do, maturation typically involves rearangement and/or cleavage of viral proteins, resulting in the virion becoming competent for reinfection.
Synonyms: viral particle maturation; virus particle maturation
viral tropism switching (GO:0098678)
Namespace: biological_process
Definition: A process by which the range of hosts which a virus can bind and infect is changed. Examples include phages that switch between types of fibers via the action of a virally encoded invertase.
obsolete regulation of carbohydrate catabolic process by regulation of transcription from RNA polymerase II promoter (GO:0098679)
Namespace: biological_process
Definition: OBSOLETE. A regulation of transcription from RNA polymerase II promoter that results in regulation of carbohydrate catabloism.
Synonyms: regulation of carbohydrate catabolism by regulation of transcription from RNA polymerase II promoter
Comment: This term was obsoleted because it represents a GO-CAM model.
synaptic ribbon (GO:0098681)
Namespace: cellular_component
Definition: A non-membrane bound, electron dense structure associated that extends perpendicular to the presynaptic membrane in ribbon synapses. The ribbon's surface is studded with small particles to which synaptic vesicles tether via fine filaments. The tethered vesicles function as a pool, several fold greater than the docked pool available for fast release, which supports sustained release of vesicles. Synaptic ribbons may be plate like or spherical.
cochlear hair cell ribbon synapse (GO:0098683)
Namespace: cellular_component
Definition: A ribbon synpase of an auditory hair cell of the cochlear. These ribbon synapses contain spherical synaptic ribbons and lack and arciform density.
Schaffer collateral - CA1 synapse (GO:0098685)
Namespace: cellular_component
Definition: A synapse between the Schaffer collateral axon of a CA3 pyramidal cell and a CA1 pyramidal cell.
hippocampal mossy fiber to CA3 synapse (GO:0098686)
Namespace: cellular_component
Definition: One of the giant synapses that form between the mossy fiber axons of dentate gyrus granule cells and the large complex spines of CA3 pyramidal cells. It consists of a giant bouton known as the mossy fiber expansion, synapsed to the complex, multiheaded spine (thorny excresence) of a CA3 pyramidal cell.
chromosomal region (GO:0098687)
Namespace: cellular_component
Definition: Any subdivision of a chromosome along its length.
Synonyms: chromosome region
Comment: Chromosomal regions include parts that are not part of the chromatin. Examples include the kinetochore.
parallel fiber to Purkinje cell synapse (GO:0098688)
Namespace: cellular_component
Definition: An excitatory synapse formed by the parallel fibers of granule cells synapsing onto the dendrites of Purkinje cells.
latency-replication decision (GO:0098689)
Namespace: biological_process
Definition: The process by which a virus switches on its replication cycle in an infected cell. The process is typically controlled by a genetic switch controlled by environmental factors such as cell type, cell shape, the availability of nutrients, superinfection or exposure of infected cells to UV or various chemical stimuli.
Synonyms: Latency-replication switch; lytic switch; prophage induction; proviral induction; proviral switch; reactivation of latent virus
glycinergic synapse (GO:0098690)
Namespace: cellular_component
Definition: A synapse that uses glycine as a neurotransmitter.
dopaminergic synapse (GO:0098691)
Namespace: cellular_component
Definition: A synapse that uses dopamine as a neurotransmitter.
regulation of synaptic vesicle cycle (GO:0098693)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the synaptic vesicle cycle.
regulation of synaptic vesicle budding from presynaptic endocytic zone membrane (GO:0098694)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of synaptic vesicle budding from presynaptic endocytic zone membrane.
inositol 1,4,5-trisphosphate receptor activity involved in regulation of postsynaptic cytosolic calcium levels (GO:0098695)
Namespace: molecular_function
Definition: Any inositol 1,4,5-trisphosphate receptor activity that is involved in regulation of postsynaptic cytosolic calcium ion concentration.
Synonyms: IP3 receptor activity involved in regulation of postsynaptic cytosolic calcium levels
regulation of neurotransmitter receptor localization to postsynaptic specialization membrane (GO:0098696)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of neurotransmitter receptor localization to postsynaptic specialization membrane.
obsolete obsolete ryanodine-sensitive calcium-release channel activity involved in regulation of postsynaptic cytosolic calcium levels (GO:0098697)
Namespace: molecular_function
Definition: OBSOLETE. OBSOLETE. Any ryanodine-sensitive calcium-release channel activity that is involved in regulation of postsynaptic cytosolic calcium ion concentration.
Comment: This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.
postsynaptic specialization assembly (GO:0098698)
Namespace: biological_process
Definition: The aggregation, arrangement and bonding together of a set of components to form a postsynaptic specialization, a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane.
structural constituent of presynaptic actin cytoskeleton (GO:0098699)
Namespace: molecular_function
Definition: The action of a molecule that contributes to the structural integrity of a presynaptic actin cytoskeleton.
neurotransmitter loading into synaptic vesicle (GO:0098700)
Namespace: biological_process
Definition: The active transport of neurotransmitters into a synaptic vesicle. This import is fuelled by an electrochemical gradient across the vesicle membrane, established by the action of proton pumps.
Synonyms: neurotransmitter import into synaptic vesicle; neurotransmitter uptake into synaptic vesicle; synaptic vesicle neurotransmitter loading
adenine import across plasma membrane (GO:0098702)
Namespace: biological_process
Definition: The directed movement of adenine from outside of a cell, across the plasma membrane and into the cytosol.
Synonyms: adenine import into cell
calcium ion import across plasma membrane (GO:0098703)
Namespace: biological_process
Definition: The directed movement of calcium ions from outside of a cell, across the plasma membrane and into the cytosol.
Synonyms: calcium ion import into cell; calcium ion uptake into cell
carbohydrate import across plasma membrane (GO:0098704)
Namespace: biological_process
Definition: The directed movement of a carbohydrate from outside of a cell, across the plasma membrane and into the cytosol.
Synonyms: carbohydrate import into cell
copper ion import across plasma membrane (GO:0098705)
Namespace: biological_process
Definition: The directed movement of copper ions from outside of a cell, across the plasma membrane and into the cytosol.
Synonyms: copper cation import into cell; copper ion import into cell; high affinity copper ion transport; high affinity copper transport; high-affinity copper ion transport
iron ion import across cell outer membrane (GO:0098706)
Namespace: biological_process
Definition: The directed movement of iron ions from outside of a cell, across the cell outer membrane and into the periplasmic space.
Synonyms: ferric ion import into cell; ferric iron import across cell outer membrane; ferric iron import into cell; ferric iron transmembrane transport; high affinity ferric iron transport; high-affinity ferric iron transmembrane transport
D-glucose import across plasma membrane (GO:0098708)
Namespace: biological_process
Definition: The directed movement of D-glucose from outside of a cell, across the plasma membrane and into the cytosol.
Synonyms: glucose import across plasma membrane; glucose import into cell; high affinity glucose import
guanine import across plasma membrane (GO:0098710)
Namespace: biological_process
Definition: The directed movement of guanine from outside of a cell, across the plasma membrane and into the cytosol.
Synonyms: guanine import into cell
iron ion import across plasma membrane (GO:0098711)
Namespace: biological_process
Definition: The directed movement of iron ions from outside of a cell, across the plasma membrane and into the cytosol.
Synonyms: ferrous ion import into cell; ferrous iron import across plasma membrane; ferrous iron import into cell; iron import into cell; iron ion import into cell
L-glutamate import across plasma membrane (GO:0098712)
Namespace: biological_process
Definition: The directed movement of L-glutamate from outside of a cell, across the plasma membrane and into the cytosol.
Synonyms: L-glutamate import into cell; L-glutamate(1-) import across plasma membrane; L-glutamate(1-) import into cell
obsolete leucine import across plasma membrane (GO:0098713)
Namespace: biological_process
Definition: OBSOLETE. The directed movement of leucine from outside of a cell, across the plasma membrane and into the cytosol.
Synonyms: L-leucine import into cell; leucine import into cell
Comment: This term has been obsoleted because it represents the same process as GO:1903801 L-leucine import across plasma membrane.
malate import across plasma membrane (GO:0098714)
Namespace: biological_process
Definition: The directed movement of malate from outside of a cell, across the plasma membrane and into the cytosol.
Synonyms: malate import into cell
malonic acid import across plasma membrane (GO:0098715)
Namespace: biological_process
Definition: The directed movement of malonic acid from outside of a cell, across the plasma membrane and into the cytosol.
Synonyms: malonate import into cell; malonic acid import into cell
nickel cation import across plasma membrane (GO:0098716)
Namespace: biological_process
Definition: The directed movement of nickel cations from outside of a cell, across the plasma membrane and into the cytosol.
Synonyms: nickel cation import into cell
succinate import across plasma membrane (GO:0098720)
Namespace: biological_process
Definition: The directed movement of succinate from outside of a cell, across the plasma membrane and into the cytosol.
Synonyms: succinate import into cell