LiteFold/GO huggingface dataset:
caffeoyl-CoA O-methyltransferase activity (GO:0042409)
Namespace: molecular_function
Definition: Catalysis of the reaction: S-adenosyl-L-methionine + caffeoyl-CoA = S-adenosyl-L-homocysteine + feruloyl-CoA.
Synonyms: caffeoyl CoA:S-adenosyl-L-methionine O-methyltransferase activity; caffeoyl coenzyme A methyltransferase activity; caffeoyl-CoA 3-O-methyltransferase activity; S-adenosyl-L-methionine:caffeoyl-CoA 3-O-methyltransferase activity; trans-caffeoyl-CoA 3-O-methyltransferase activity
6-carboxyhexanoate-CoA ligase activity (GO:0042410)
Namespace: molecular_function
Definition: Catalysis of the reaction: ATP + CoA + pimelate = AMP + diphosphate + H+ + pimelyl-CoA.
Synonyms: 6-carboxyhexanoate:CoA ligase (AMP-forming); 6-carboxyhexanoyl-CoA synthetase activity; pimeloyl-CoA synthetase activity; pimelyl-CoA synthetase activity
taurine biosynthetic process (GO:0042412)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of taurine (2-aminoethanesulfonic acid), a sulphur-containing amino acid derivative important in the metabolism of fats.
Synonyms: taurine anabolism; taurine biosynthesis; taurine formation; taurine synthesis
carnitine catabolic process (GO:0042413)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of carnitine (hydroxy-trimethyl aminobutyric acid), a compound that participates in the transfer of acyl groups across the inner mitochondrial membrane.
Synonyms: carnitine breakdown; carnitine catabolism; carnitine degradation; vitamin Bt catabolic process; vitamin Bt catabolism
epinephrine metabolic process (GO:0042414)
Namespace: biological_process
Definition: The chemical reactions and pathways involving epinephrine, a hormone produced by the medulla of the adrenal glands that increases heart activity, improves the power and prolongs the action of muscles, and increases the rate and depth of breathing. It is synthesized by the methylation of norepinephrine.
Synonyms: adrenaline metabolic process; adrenaline metabolism; epinephrine metabolism
dopamine biosynthetic process (GO:0042416)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline.
Synonyms: dopamine anabolism; dopamine biosynthesis; dopamine formation; dopamine synthesis
dopamine metabolic process (GO:0042417)
Namespace: biological_process
Definition: The chemical reactions and pathways involving dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline.
Synonyms: dopamine metabolism
epinephrine biosynthetic process (GO:0042418)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of epinephrine, a hormone produced by the medulla of the adrenal glands that increases heart activity, improves the power and prolongs the action of muscles, and increases the rate and depth of breathing. It is synthesized by the methylation of norepinephrine.
Synonyms: adrenaline biosynthesis; adrenaline biosynthetic process; epinephrine anabolism; epinephrine biosynthesis; epinephrine formation; epinephrine synthesis
epinephrine catabolic process (GO:0042419)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of epinephrine, a hormone produced by the medulla of the adrenal glands that increases heart activity, improves the power and prolongs the action of muscles, and increases the rate and depth of breathing. It is synthesized by the methylation of norepinephrine.
Synonyms: adrenaline catabolic process; adrenaline catabolism; epinephrine breakdown; epinephrine catabolism; epinephrine degradation
dopamine catabolic process (GO:0042420)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline.
Synonyms: dopamine breakdown; dopamine catabolism; dopamine degradation
norepinephrine biosynthetic process (GO:0042421)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of norepinephrine, a hormone secreted by the adrenal medulla, and a neurotransmitter in the sympathetic peripheral nervous system and in some tracts in the central nervous system. It is also the demethylated biosynthetic precursor of epinephrine.
Synonyms: levarterenol biosynthesis; levarterenol biosynthetic process; noradrenaline biosynthesis; noradrenaline biosynthetic process; norepinephrine anabolism; norepinephrine biosynthesis; norepinephrine formation; norepinephrine synthesis
norepinephrine catabolic process (GO:0042422)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of norepinephrine, a hormone secreted by the adrenal medulla, and a neurotransmitter in the sympathetic peripheral nervous system and in some tracts in the central nervous system. It is also the demethylated biosynthetic precursor of epinephrine.
Synonyms: levarterenol catabolic process; levarterenol catabolism; noradrenaline catabolic process; noradrenaline catabolism; norepinephrine breakdown; norepinephrine catabolism; norepinephrine degradation
catecholamine biosynthetic process (GO:0042423)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of any of a group of physiologically important biogenic amines that possess a catechol (3,4-dihydroxyphenyl) nucleus and are derivatives of 3,4-dihydroxyphenylethylamine.
Synonyms: catecholamine anabolism; catecholamine biosynthesis; catecholamine formation; catecholamine synthesis
catecholamine catabolic process (GO:0042424)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of any of a group of physiologically important biogenic amines that possess a catechol (3,4-dihydroxyphenyl) nucleus and are derivatives of 3,4-dihydroxyphenylethylamine.
Synonyms: catecholamine breakdown; catecholamine catabolism; catecholamine degradation
choline biosynthetic process (GO:0042425)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of choline (2-hydroxyethyltrimethylammonium), an amino alcohol that occurs widely in living organisms as a constituent of certain types of phospholipids and in the neurotransmitter acetylcholine.
Synonyms: choline anabolism; choline biosynthesis; choline formation; choline synthesis
choline catabolic process (GO:0042426)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of choline (2-hydroxyethyltrimethylammonium), an amino alcohol that occurs widely in living organisms as a constituent of certain types of phospholipids and in the neurotransmitter acetylcholine.
Synonyms: choline breakdown; choline catabolism; choline degradation
serotonin biosynthetic process (GO:0042427)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of serotonin (5-hydroxytryptamine), a monoamine neurotransmitter occurring in the peripheral and central nervous systems, also having hormonal properties.
Synonyms: serotonin anabolism; serotonin biosynthesis; serotonin formation; serotonin synthesis
serotonin metabolic process (GO:0042428)
Namespace: biological_process
Definition: The chemical reactions and pathways involving serotonin (5-hydroxytryptamine), a monoamine neurotransmitter occurring in the peripheral and central nervous systems, also having hormonal properties.
Synonyms: serotonin metabolism
serotonin catabolic process (GO:0042429)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of serotonin (5-hydroxytryptamine), a monoamine neurotransmitter occurring in the peripheral and central nervous systems, also having hormonal properties.
Synonyms: serotonin breakdown; serotonin catabolism; serotonin degradation
indole-containing compound metabolic process (GO:0042430)
Namespace: biological_process
Definition: The chemical reactions and pathways involving compounds that contain an indole (2,3-benzopyrrole) skeleton.
Synonyms: indole and derivative metabolic process; indole and derivative metabolism; indole derivative metabolic process; indole derivative metabolism; indole-containing compound metabolism; ketole metabolic process; ketole metabolism
indole metabolic process (GO:0042431)
Namespace: biological_process
Definition: The chemical reactions and pathways involving indole (2,3-benzopyrrole), the basis of many biologically active substances (e.g. serotonin, tryptophan).
Synonyms: indole metabolism
indole biosynthetic process (GO:0042432)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of indole (2,3-benzopyrrole), the basis of many biologically active substances (e.g. serotonin, tryptophan).
Synonyms: indole anabolism; indole biosynthesis; indole formation; indole synthesis
indole catabolic process (GO:0042433)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of indole (2,3-benzopyrrole), the basis of many biologically active substances (e.g. serotonin, tryptophan).
Synonyms: indole breakdown; indole catabolism; indole degradation
indole-containing compound biosynthetic process (GO:0042435)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of compounds that contain an indole (2,3-benzopyrrole) skeleton.
Synonyms: indole derivative biosynthesis; indole derivative biosynthetic process; indole-containing compound anabolism; indole-containing compound biosynthesis; indole-containing compound formation; indole-containing compound synthesis
indole-containing compound catabolic process (GO:0042436)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of compounds that contain an indole (2,3-benzopyrrole) skeleton.
Synonyms: indole derivative catabolic process; indole derivative catabolism; indole-containing compound breakdown; indole-containing compound catabolism; indole-containing compound degradation
indoleacetic acid catabolic process (GO:0042437)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of indole-3-acetic acid, a compound which functions as a growth regulator in plants.
Synonyms: IAA catabolic process; indole acetic acid catabolic process; indole acetic acid catabolism; indoleacetic acid breakdown; indoleacetic acid catabolism; indoleacetic acid degradation
melanin biosynthetic process (GO:0042438)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of melanins, pigments largely of animal origin. High molecular weight polymers of indole quinone, they are irregular polymeric structures and are divided into three groups: allomelanins in the plant kingdom and eumelanins and phaeomelanins in the animal kingdom.
Synonyms: melanin anabolism; melanin biosynthesis; melanin formation; melanin synthesis
obsolete ethanolamine-containing compound metabolic process (GO:0042439)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving ethanolamine (2-aminoethanol) and compounds derived from it.
Synonyms: ethanolamine and derivative metabolic process; ethanolamine and derivative metabolism; ethanolamine-containing compound metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
eye pigment metabolic process (GO:0042441)
Namespace: biological_process
Definition: The chemical reactions and pathways involving eye pigments, any general or particular coloring matter in living organisms, found or utilized in the eye.
Synonyms: eye pigment metabolism
melatonin catabolic process (GO:0042442)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of melatonin (N-acetyl-5-methoxytryptamine).
Synonyms: melatonin breakdown; melatonin catabolism; melatonin degradation
phenylethylamine metabolic process (GO:0042443)
Namespace: biological_process
Definition: The chemical reactions and pathways involving phenylethylamine, an amine with pharmacological properties similar to those of amphetamine, occurs naturally as a neurotransmitter in the brain, and is present in chocolate and oil of bitter almonds.
Synonyms: phenylethylamine metabolism
phenylethylamine biosynthetic process (GO:0042444)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of phenylethylamine, an amine with pharmacological properties similar to those of amphetamine, occurs naturally as a neurotransmitter in the brain, and is present in chocolate and oil of bitter almonds.
Synonyms: phenylethylamine anabolism; phenylethylamine biosynthesis; phenylethylamine formation; phenylethylamine synthesis
hormone biosynthetic process (GO:0042446)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone.
Synonyms: hormone anabolism; hormone biosynthesis; hormone formation; hormone synthesis
hormone catabolic process (GO:0042447)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone.
Synonyms: hormone breakdown; hormone catabolism; hormone degradation
progesterone metabolic process (GO:0042448)
Namespace: biological_process
Definition: The chemical reactions and pathways involving progesterone, a steroid hormone produced in the ovary which prepares and maintains the uterus for pregnancy. Also found in plants.
Synonyms: progesterone metabolism
obsolete L-arginine biosynthetic process via ornithine (GO:0042450)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of arginine (2-amino-5-guanidinopentanoic acid) via the intermediate compound ornithine.
Synonyms: arginine anabolism via ornithine; arginine biosynthesis, acetylated pathway; arginine formation via ornithine; arginine synthesis via ornithine; classical arginine biosynthesis pathway
Comment: The reason for obsoletion is that this term represents a GO-CAM model.
purine nucleoside biosynthetic process (GO:0042451)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of any purine nucleoside, one of a family of organic molecules consisting of a purine base covalently bonded to a sugar ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside).
Synonyms: purine nucleoside anabolism; purine nucleoside biosynthesis; purine nucleoside formation; purine nucleoside synthesis
deoxyguanosine biosynthetic process (GO:0042452)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of deoxyguanosine, a nucleoside consisting of the base guanine and the sugar deoxyribose.
Synonyms: deoxyguanosine anabolism; deoxyguanosine biosynthesis; deoxyguanosine formation; deoxyguanosine synthesis
obsolete deoxyguanosine metabolic process (GO:0042453)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving deoxyguanosine, a nucleoside consisting of the base guanine and the sugar deoxyribose.
Synonyms: deoxyguanosine metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
ribonucleoside catabolic process (GO:0042454)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of any ribonucleoside, a nucleoside in which purine or pyrimidine base is linked to a ribose (beta-D-ribofuranose) molecule.
Synonyms: ribonucleoside breakdown; ribonucleoside catabolism; ribonucleoside degradation
ribonucleoside biosynthetic process (GO:0042455)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of any ribonucleoside, a nucleoside in which purine or pyrimidine base is linked to a ribose (beta-D-ribofuranose) molecule.
Synonyms: ribonucleoside anabolism; ribonucleoside biosynthesis; ribonucleoside formation; ribonucleoside synthesis
ethylene catabolic process (GO:0042457)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of ethylene (C2-H4, ethene), a simple hydrocarbon gas that can function in plants as a growth regulator.
Synonyms: ethene catabolic process; ethene catabolism; ethylene breakdown; ethylene catabolism; ethylene degradation
obsolete nopaline catabolic process to proline (GO:0042458)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the breakdown of nopaline into other compounds, including proline.
Synonyms: nopaline breakdown to proline; nopaline degradation to proline
Comment: The reason for obsoletion is that this term represents a molecular function.
obsolete octopine catabolic process to proline (GO:0042459)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the breakdown of octopine into other compounds, including proline.
Synonyms: octopine breakdown to proline; octopine degradation to proline
Comment: The reason for obsoletion is that this term represents a molecular function.
photoreceptor cell development (GO:0042461)
Namespace: biological_process
Definition: Development of a photoreceptor, a cell that responds to incident electromagnetic radiation, particularly visible light.
Synonyms: photoreceptor morphogenesis
eye photoreceptor cell development (GO:0042462)
Namespace: biological_process
Definition: Development of a photoreceptor, a sensory cell in the eye that reacts to the presence of light. They usually contain a pigment that undergoes a chemical change when light is absorbed, thus stimulating a nerve.
ocellus photoreceptor cell development (GO:0042463)
Namespace: biological_process
Definition: Development of photoreceptors, sensory cells that react to the presence of light, found in the ocellus.
Synonyms: non-eye photoreceptor development
kinesis (GO:0042465)
Namespace: biological_process
Definition: The movement of a cell or organism in response to a stimulus in which the rate of movement depends on the intensity (rather than the direction) of the stimulus.
chemokinesis (GO:0042466)
Namespace: biological_process
Definition: A response by a motile cell to a soluble chemical that involves an increase or decrease in speed (positive or negative orthokinesis) or of frequency of movement or a change in the frequency or magnitude of turning behavior (klinokinesis).
orthokinesis (GO:0042467)
Namespace: biological_process
Definition: The movement of a cell or organism in response to a stimulus in which the speed or frequency of movement is increased or decreased.
klinokinesis (GO:0042468)
Namespace: biological_process
Definition: The movement of a cell or organism in response to a stimulus in which the frequency or magnitude of turning behavior is altered.
versicolorin reductase activity (GO:0042469)
Namespace: molecular_function
Definition: Catalysis of the reduction of versicolorin A to sterigmatocystin.
melanosome (GO:0042470)
Namespace: cellular_component
Definition: A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells.
ear morphogenesis (GO:0042471)
Namespace: biological_process
Definition: The process in which the anatomical structures of the ear are generated and organized. The ear is the sense organ in vertebrates that is specialized for the detection of sound, and the maintenance of balance. Includes the outer ear and middle ear, which collect and transmit sound waves; and the inner ear, which contains the organs of balance and (except in fish) hearing. Also includes the pinna, the visible part of the outer ear, present in some mammals.
Synonyms: hearing organ morphogenesis
inner ear morphogenesis (GO:0042472)
Namespace: biological_process
Definition: The process in which the anatomical structures of the inner ear are generated and organized. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively.
outer ear morphogenesis (GO:0042473)
Namespace: biological_process
Definition: The process in which the anatomical structures of the outer ear are generated and organized. The outer ear is the part of the ear external to the tympanum (eardrum). It consists of a tube (the external auditory meatus) that directs sound waves on to the tympanum, and may also include the external pinna, which extends beyond the skull.
middle ear morphogenesis (GO:0042474)
Namespace: biological_process
Definition: The process in which the anatomical structures of the middle ear are generated and organized. The middle ear is the air-filled cavity within the skull of vertebrates that lies between the outer ear and the inner ear. It is linked to the pharynx (and therefore to outside air) via the Eustachian tube and in mammals contains the three ear ossicles, which transmit auditory vibrations from the outer ear (via the tympanum) to the inner ear (via the oval window).
odontogenesis of dentin-containing tooth (GO:0042475)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of a dentin-containing tooth over time, from its formation to the mature structure. A dentin-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and is composed mainly of dentin, a dense calcified substance, covered by a layer of enamel.
Synonyms: odontogenesis of dentine-containing teeth; odontogenesis of dentine-containing tooth; odontogeny; odontosis; tooth development
Comment: Note that placoid scales found in the cartilaginous fishes presumably develop through the same processes, but are found on the dermis, rather than in the mouth or pharynx. See Wikipedia:Placoid_scale#Placoid_scales.
odontogenesis (GO:0042476)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of a tooth or teeth over time, from formation to the mature structure(s). A tooth is any hard bony, calcareous, or chitinous organ found in the mouth or pharynx of an animal and used in procuring or masticating food.
Synonyms: odontogenesis of calcareous or chitinous tooth; odontogeny; odontosis; tooth development; tooth morphogenesis
regulation of eye photoreceptor cell development (GO:0042478)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of eye photoreceptor development.
Synonyms: regulation of eye photoreceptor development
positive regulation of eye photoreceptor cell development (GO:0042479)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of eye photoreceptor development.
Synonyms: activation of eye photoreceptor cell development; positive regulation of eye photoreceptor development; stimulation of eye photoreceptor cell development; up regulation of eye photoreceptor cell development; up-regulation of eye photoreceptor cell development; upregulation of eye photoreceptor cell development