LiteFold/GO huggingface dataset:
stamen formation (GO:0048455)
Namespace: biological_process
Definition: The process that contributes to the act of giving rise to the stamen. This process pertains to the initial formation of a structure from unspecified parts.
stamen structural organization (GO:0048456)
Namespace: biological_process
Definition: The process that contributes to the act of creating the structural organization of the stamen. This process pertains to the physical shaping of a rudimentary structure.
Synonyms: stamen structural organisation
floral whorl morphogenesis (GO:0048457)
Namespace: biological_process
Definition: The process in which the anatomical structures of the floral whorl are generated and organized.
floral whorl formation (GO:0048458)
Namespace: biological_process
Definition: The process that gives rise to the floral whorl. This process pertains to the initial formation of a structure from unspecified parts.
floral whorl structural organization (GO:0048459)
Namespace: biological_process
Definition: The process that contributes to the act of creating the structural organization of the floral whorl. This process pertains to the physical shaping of a rudimentary structure.
Synonyms: floral whorl structural organisation
flower formation (GO:0048460)
Namespace: biological_process
Definition: The process that gives rise to the flower. This process pertains to the initial formation of a structure from unspecified parts.
flower structural organization (GO:0048461)
Namespace: biological_process
Definition: The process that contributes to the act of creating the structural organization of the flower. This process pertains to the physical shaping of a rudimentary structure.
Synonyms: flower structural organisation
carpel formation (GO:0048462)
Namespace: biological_process
Definition: The process that gives rise to the carpel. This process pertains to the initial formation of a structure from unspecified parts.
carpel structural organization (GO:0048463)
Namespace: biological_process
Definition: The process that contributes to the act of creating the structural organization of the carpel. This process pertains to the physical shaping of a rudimentary structure.
Synonyms: carpel structural organisation
flower calyx development (GO:0048464)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the flower calyx over time, from its formation to the mature structure.
corolla development (GO:0048465)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the corolla over time, from its formation to the mature structure.
androecium development (GO:0048466)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the androecium over time, from its formation to the mature structure.
gynoecium development (GO:0048467)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the gynoecium over time, from its formation to the mature structure. The gynoecium is the collective name for the carpels of a flower.
Synonyms: pistil development
cell development (GO:0048468)
Namespace: biological_process
Definition: The cellular developmental process in which a specific cell progresses from an immature to a mature state. Cell development start once cell commitment has taken place.
Synonyms: terminal differentiation
cell maturation (GO:0048469)
Namespace: biological_process
Definition: The cellular developmental process, independent of morphogenetic (shape) change, that is required for a specific cell to attain its fully functional state.
Synonyms: functional differentiation
perinuclear region of cytoplasm (GO:0048471)
Namespace: cellular_component
Definition: Cytoplasm situated near, or occurring around, the nucleus.
Comment: Note that this term should not be confused with the cellular component term 'nuclear membrane lumen ; GO:0005641', which has the synonym 'perinuclear space'.
D-methionine transmembrane transport (GO:0048473)
Namespace: biological_process
Definition: The process in which D-methionine is transported across a lipid bilayer, from one side of a membrane to the other.
coated membrane (GO:0048475)
Namespace: cellular_component
Definition: A single or double lipid bilayer with any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes.
Holliday junction resolvase complex (GO:0048476)
Namespace: cellular_component
Definition: An endodeoxyribonuclease complex that resolves the 4-way DNA intermediates of a Holliday junction into two separate duplex DNA molecules. Can be branch-migration associated.
Synonyms: Mus81-Eme1 complex; Mus81-Eme1 holliday resolvase complex; Mus81-Eme2 complex; Mus81-Eme2 holliday resolvase complex; resolvasome
oogenesis (GO:0048477)
Namespace: biological_process
Definition: The complete process of formation and maturation of an ovum or female gamete from a primordial female germ cell. Examples of this process are found in Mus musculus and Drosophila melanogaster.
Synonyms: ovum development
obsolete replication fork protection (GO:0048478)
Namespace: biological_process
Definition: OBSOLETE. Any process that prevents the collapse of stalled replication forks.
Synonyms: replication fork maintenance; replication fork stabilization
Comment: This term is obsoleted because it represents a phenotype and was unclearly defined.
style development (GO:0048479)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the style over time, from its formation to the mature structure. The style is an elongated part of a carpel, or group of fused carpels, and it lies between the ovary and the stigma.
stigma development (GO:0048480)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the stigma over time, from its formation to the mature structure. The stigma is the pollen-receptive surface of a carpel or group of fused carpels, usually sticky.
plant ovule development (GO:0048481)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the ovule over time, from its formation to the mature structure. The ovule is the structure in seed plants enclosing the female gametophyte, and is composed of the nucellus, one or two integuments, and the funiculus; it develops into the seed.
plant ovule morphogenesis (GO:0048482)
Namespace: biological_process
Definition: The process in which the anatomical structures of the ovule are generated and organized. The ovule is the structure in seed plants enclosing the female gametophyte, and is composed of the nucellus, one or two integuments, and the funiculus; it develops into the seed.
autonomic nervous system development (GO:0048483)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the autonomic nervous system over time, from its formation to the mature structure. The autonomic nervous system is composed of neurons that are not under conscious control, and is comprised of two antagonistic components, the sympathetic and parasympathetic nervous systems. The autonomic nervous system regulates key functions including the activity of the cardiac (heart) muscle, smooth muscles (e.g. of the gut), and glands.
enteric nervous system development (GO:0048484)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the enteric nervous system over time, from its formation to the mature structure. The enteric nervous system is composed of two ganglionated neural plexuses in the gut wall which form one of the three major divisions of the autonomic nervous system. The enteric nervous system innervates the gastrointestinal tract, the pancreas, and the gallbladder. It contains sensory neurons, interneurons, and motor neurons. Thus the circuitry can autonomously sense the tension and the chemical environment in the gut and regulate blood vessel tone, motility, secretions, and fluid transport. The system is itself governed by the central nervous system and receives both parasympathetic and sympathetic innervation.
sympathetic nervous system development (GO:0048485)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the sympathetic nervous system over time, from its formation to the mature structure. The sympathetic nervous system is one of the two divisions of the vertebrate autonomic nervous system (the other being the parasympathetic nervous system). The sympathetic preganglionic neurons have their cell bodies in the thoracic and lumbar regions of the spinal cord and connect to the paravertebral chain of sympathetic ganglia. Innervate heart and blood vessels, sweat glands, viscera and the adrenal medulla. Most sympathetic neurons, but not all, use noradrenaline as a post-ganglionic neurotransmitter.
beta-tubulin binding (GO:0048487)
Namespace: molecular_function
Definition: Binding to the microtubule constituent protein beta-tubulin.
Synonyms: beta tubulin binding
synaptic vesicle endocytosis (GO:0048488)
Namespace: biological_process
Definition: A vesicle-mediated transport process, in which the synaptic vesicle membrane constituents are retrieved from the presynaptic membrane on the axon terminal after neurotransmitter secretion by exocytosis. Synaptic vesicle endocytosis can occur via clathrin-dependent and clathrin-independent mechanisms.
Synonyms: synaptic vesicle retrieval
synaptic vesicle transport (GO:0048489)
Namespace: biological_process
Definition: The directed movement of synaptic vesicles.
Synonyms: synaptic vesicle fission; synaptic vesicle fusion; synaptic vesicle trafficking
retrograde synaptic vesicle transport (GO:0048491)
Namespace: biological_process
Definition: The directed movement of synaptic vesicle along axonal microtubules from the presynapse to the cell body.
Synonyms: retrograde axonal transport of synaptic vesicle
ribulose bisphosphate carboxylase complex (GO:0048492)
Namespace: cellular_component
Definition: A complex containing either both large and small subunits or just small subunits which carries out the activity of producing 3-phosphoglycerate from carbon dioxide and ribulose-1,5-bisphosphate.
Synonyms: RubisCO complex
plasma membrane-derived thylakoid ribulose bisphosphate carboxylase complex (GO:0048493)
Namespace: cellular_component
Definition: A complex, located in the plasma membrane-derived thylakoid, containing either both large and small subunits or just small subunits. It carries out the activity of producing 3-phosphoglycerate from carbon dioxide and ribulose-1,5-bisphosphate.
Synonyms: plasma membrane ribulose bisphosphate carboxylase complex; ribulose bisphosphate carboxylase complex; RubisCO complex
chromatophore ribulose bisphosphate carboxylase complex (GO:0048494)
Namespace: cellular_component
Definition: A complex, located in the chromatophore, containing either both large and small subunits or just small subunits which carries out the activity of producing 3-phosphoglycerate from carbon dioxide and ribulose-1,5-bisphosphate.
Synonyms: RubisCO complex
Roundabout binding (GO:0048495)
Namespace: molecular_function
Definition: Binding to Roundabout (ROBO) receptor, a transmembrane receptor.
Synonyms: Roundabout receptor binding
maintenance of animal organ identity (GO:0048496)
Namespace: biological_process
Definition: The process in which the identity of an animal organ is maintained. Identity is considered to be the aggregate of characteristics by which a structure is recognized.
establishment of petal orientation (GO:0048498)
Namespace: biological_process
Definition: The process that determines the orientation of petals with reference to the central axis.
synaptic vesicle membrane organization (GO:0048499)
Namespace: biological_process
Definition: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the membrane surrounding a synaptic vesicle.
Synonyms: SLMV biogenesis; synaptic vesicle membrane organisation; synaptic vesicle membrane organization and biogenesis
signal recognition particle (GO:0048500)
Namespace: cellular_component
Definition: A complex of protein and RNA which facilitates translocation of proteins across membranes.
signal recognition particle, plasma membrane targeting (GO:0048501)
Namespace: cellular_component
Definition: A complex consisting of a protein and RNA component which binds the signal sequence of some proteins and facilitates their export to or across the plasma membrane.
ABC-type thiamine transporter activity (GO:0048502)
Namespace: molecular_function
Definition: Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + thiamine(out) = ADP + H+ + phosphate + thiamine(in).
Synonyms: ATP-dependent thiamine transmembrane transporter activity; ATPase-coupled thiamine transmembrane transporter activity; thiamin pyrophosphate ABC transporter; thiamin pyrophosphate porter activity; thiamin pyrophosphate transporting ATPase activity; thiamin-transporting ATPase activity; thiamine ABC transporter; thiamine pyrophosphate-transporting ATPase activity; thiamine-transporting ATPase activity; TPP transporting ATPase activity
obsolete GPI anchor binding (GO:0048503)
Namespace: molecular_function
Definition: OBSOLETE. Interacting selectively with any glycosylphosphatidylinositol anchor. GPI anchors serve to attach membrane proteins to the lipid bilayer of cell membranes.
Synonyms: glycosylphosphatidylinositol binding; GPI anchor binding
Comment: This term was made obsolete because it has been widely, and incorrectly, used to annotate proteins that have GPI anchors covalently attached. A new term has been created that can be used to annotate gene products that interact non-covalently with GPI anchors.
regulation of timing of animal organ formation (GO:0048504)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency or extent of animal organ formation at a consistent predetermined time point during development.
Synonyms: timing of organ biosynthesis; timing of organ formation
regulation of timing of cell differentiation (GO:0048505)
Namespace: biological_process
Definition: The process controlling the activation and/or rate at which relatively unspecialized cells acquire specialized features. Any process that modulates the rate, frequency or extent of the XXX at a consistent predetermined time point during its development.
Synonyms: timing of cell differentiation
regulation of timing of meristematic phase transition (GO:0048506)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency or extent of a change in identity of a meristem at a characteristic predetermined time point.
meristem development (GO:0048507)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the meristem over time, from its formation to the mature structure.
regulation of meristem development (GO:0048509)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of meristem development, the biological process whose specific outcome is the progression of the meristem over time, from its formation to the mature structure.
regulation of timing of transition from vegetative to reproductive phase (GO:0048510)
Namespace: biological_process
Definition: The process controlling the point in time during development when a vegetative meristem will change its identity to become an inflorescence or floral meristem, and/or the rate at which the change occurs.
rhythmic process (GO:0048511)
Namespace: biological_process
Definition: Any process pertinent to the generation and maintenance of rhythms in the physiology of an organism.
Synonyms: rhythm
circadian behavior (GO:0048512)
Namespace: biological_process
Definition: The specific behavior of an organism that recurs with a regularity of approximately 24 hours.
Synonyms: circadian rhythm behavior
animal organ development (GO:0048513)
Namespace: biological_process
Definition: Development of a tissue or tissues that work together to perform a specific function or functions. Development pertains to the process whose specific outcome is the progression of a structure over time, from its formation to the mature structure. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions.
Synonyms: development of an organ; organogenesis
blood vessel morphogenesis (GO:0048514)
Namespace: biological_process
Definition: The process in which the anatomical structures of blood vessels are generated and organized. The blood vessel is the vasculature carrying blood.
spermatid differentiation (GO:0048515)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of a spermatid over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell.
Synonyms: spermatid cell differentiation
obsolete trichome initiation (sensu Magnoliophyta) (GO:0048516)
Namespace: biological_process
Definition: OBSOLETE. Processes causing the differentiation of an epidermal cell into a trichome cell; as in, but not restricted to, the flowering plants (Magnoliophyta, ncbi_taxonomy_id:3398).
Synonyms: trichome initiation (sensu Magnoliophyta)
Comment: This term was made obsolete because more appropriate terms were created.
obsolete positive regulation of trichome initiation (sensu Magnoliophyta) (GO:0048517)
Namespace: biological_process
Definition: OBSOLETE. Any process that activates or increases the frequency, rate or extent of trichome initiation; as in, but not restricted to, the flowering plants (Magnoliophyta, ncbi_taxonomy_id:3398).
Synonyms: positive regulation of trichome initiation (sensu Magnoliophyta)
Comment: This term was made obsolete because more appropriate terms were created.
positive regulation of biological process (GO:0048518)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule.
Synonyms: activation of biological process; positive regulation of physiological process; stimulation of biological process; up regulation of biological process; up-regulation of biological process; upregulation of biological process
negative regulation of biological process (GO:0048519)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule.
Synonyms: down regulation of biological process; down-regulation of biological process; downregulation of biological process; inhibition of biological process; negative regulation of physiological process
positive regulation of behavior (GO:0048520)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of behavior, the internally coordinated responses (actions or inactions) of whole living organisms (individuals or groups) to internal or external stimuli.
Synonyms: activation of behavior; stimulation of behavior; up regulation of behavior; up-regulation of behavior; upregulation of behavior
negative regulation of behavior (GO:0048521)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of behavior, the internally coordinated responses (actions or inactions) of whole living organisms (individuals or groups) to internal or external stimuli.
Synonyms: down regulation of behavior; down-regulation of behavior; downregulation of behavior; inhibition of behavior
positive regulation of cellular process (GO:0048522)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
Synonyms: activation of cellular process; positive regulation of cellular physiological process; stimulation of cellular process; up regulation of cellular process; up-regulation of cellular process; upregulation of cellular process
negative regulation of cellular process (GO:0048523)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
Synonyms: down regulation of cellular process; down-regulation of cellular process; downregulation of cellular process; inhibition of cellular process; negative regulation of cellular physiological process
positive regulation of viral process (GO:0048524)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of a multi-organism process in which a virus is a participant.
Synonyms: activation of viral life cycle; positive regulation of viral life cycle; positive regulation of viral reproduction; stimulation of viral life cycle; up regulation of viral life cycle; up-regulation of viral life cycle; upregulation of viral life cycle
negative regulation of viral process (GO:0048525)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of a multi-organism process in which a virus is a participant.
Synonyms: down regulation of viral life cycle; down-regulation of viral life cycle; downregulation of viral life cycle; inhibition of viral life cycle; negative regulation of viral life cycle; negative regulation of viral reproduction
lateral root development (GO:0048527)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the lateral root over time, from its formation to the mature structure. A lateral root is one formed from pericycle cells located on the xylem radius of the root, as opposed to the initiation of the main root from the embryo proper.
post-embryonic root development (GO:0048528)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the post-embryonic root over time, from its formation to the mature structure.
magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity (GO:0048529)
Namespace: molecular_function
Definition: Catalysis of the reaction: magnesium protoporphyrin IX 13-monomethyl ester + 3 NADPH + 3 H+ + 3 O2 = divinylprotochlorophyllide + 3 NADP+ + 5 H2O.
Synonyms: magnesium-protoporphyrin-IX 13-monomethyl ester,NADPH:oxygen oxidoreductase (hydroxylating); Mg-protoporphyrin IX monomethyl ester (oxidative) cyclase activity; Mg-protoporphyrin IX monomethyl ester oxidative cyclase activity
fruit morphogenesis (GO:0048530)
Namespace: biological_process
Definition: The process in which the anatomical structures of a fruit are generated and organized. A fruit is a reproductive body of a seed plant.
sporocyte differentiation (GO:0048533)
Namespace: biological_process
Definition: The process in which a relatively unspecialized floral cell acquires the specialized features of a sporocyte. Sporocytes are the haploid spores of angiosperms. Once formed, they undergo meiotic divisions to form microspores and megaspores.
Synonyms: sporocyte development; sporocyte morphogenesis