LiteFold/GO huggingface dataset:
obsolete intrinsic component of organelle membrane (GO:0031300)
Namespace: cellular_component
Definition: OBSOLETE. The component of the organelle membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.
Synonyms: intrinsic to organelle membrane
Comment: This term was obsoleted because it represents protein topology, not a cellular component.
obsolete integral component of organelle membrane (GO:0031301)
Namespace: cellular_component
Definition: OBSOLETE. The component of the organelle membrane consisting of the gene products having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Synonyms: integral to organelle membrane
Comment: This term was obsoleted because it represents protein topology, not a cellular component.
obsolete intrinsic component of endosome membrane (GO:0031302)
Namespace: cellular_component
Definition: OBSOLETE. The component of the endosome membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.
Synonyms: intrinsic to endosome membrane
Comment: This term was obsoleted because it represents protein topology, not a cellular component.
obsolete integral component of endosome membrane (GO:0031303)
Namespace: cellular_component
Definition: OBSOLETE. The component of the endosome membrane consisting of the gene products having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Synonyms: integral to endosome membrane
Comment: This term was obsoleted because it represents protein topology, not a cellular component.
obsolete intrinsic component of mitochondrial inner membrane (GO:0031304)
Namespace: cellular_component
Definition: OBSOLETE. The component of the mitochondrial inner membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.
Synonyms: intrinsic to mitochondrial inner membrane
Comment: This term was obsoleted because it represents protein topology, not a cellular component.
obsolete integral component of mitochondrial inner membrane (GO:0031305)
Namespace: cellular_component
Definition: OBSOLETE. The component of the mitochondrial inner membrane consisting of the gene products having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Synonyms: integral to mitochondrial inner membrane
Comment: This term was obsoleted because it represents protein topology, not a cellular component.
obsolete intrinsic component of mitochondrial outer membrane (GO:0031306)
Namespace: cellular_component
Definition: OBSOLETE. The component of the mitochondrial outer membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.
Synonyms: intrinsic to mitochondrial outer membrane
Comment: This term was obsoleted because it represents protein topology, not a cellular component.
obsolete intrinsic component of nuclear outer membrane (GO:0031308)
Namespace: cellular_component
Definition: OBSOLETE. The component of the nuclear outer membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.
Synonyms: intrinsic to nuclear outer membrane
Comment: This term was obsoleted because it represents protein topology, not a cellular component.
obsolete intrinsic component of vacuolar membrane (GO:0031310)
Namespace: cellular_component
Definition: OBSOLETE. The component of the vacuolar membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.
Synonyms: intrinsic to vacuolar membrane
Comment: This term was obsoleted because it represents protein topology, not a cellular component.
obsolete intrinsic component of contractile vacuolar membrane (GO:0031311)
Namespace: cellular_component
Definition: OBSOLETE. The component of the contractile vacuolar membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.
Synonyms: intrinsic to contractile vacuolar membrane
Comment: This term was obsoleted because it represents protein topology, not a cellular component.
extrinsic component of organelle membrane (GO:0031312)
Namespace: cellular_component
Definition: The component of an organelle membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.
Synonyms: extrinsic to organelle membrane
extrinsic component of endosome membrane (GO:0031313)
Namespace: cellular_component
Definition: The component of an endosome membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.
Synonyms: extrinsic to endosome membrane
extrinsic component of mitochondrial inner membrane (GO:0031314)
Namespace: cellular_component
Definition: The component of mitochondrial inner membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.
Synonyms: extrinsic to mitochondrial inner membrane
extrinsic component of mitochondrial outer membrane (GO:0031315)
Namespace: cellular_component
Definition: The component of a mitochondrial outer membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.
Synonyms: extrinsic to mitochondrial outer membrane
extrinsic component of nuclear outer membrane (GO:0031316)
Namespace: cellular_component
Definition: The component of a nuclear outer membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.
Synonyms: extrinsic to nuclear outer membrane
tripartite ATP-independent periplasmic transporter complex (GO:0031317)
Namespace: cellular_component
Definition: A complex consisting of two membrane proteins and one extracytoplasmic solute receptor. Such transporters transport a variety of substrates without direct ATP power, instead using energy from ion gradients.
Synonyms: TRAP transporter complex; TRAP-T transporter complex
detection of folic acid (GO:0031318)
Namespace: biological_process
Definition: The series of events in which a folic acid stimulus is received by a cell and converted into a molecular signal.
Synonyms: detection of folate; folate detection; folate sensing; folic acid detection; folic acid sensing
hexitol dehydrogenase activity (GO:0031320)
Namespace: molecular_function
Definition: Catalysis of the reaction: hexitol + acceptor = hexose + reduced acceptor.
ascospore-type prospore assembly (GO:0031321)
Namespace: biological_process
Definition: During ascospore formation, the process in which each haploid nucleus becomes encapsulated by a double membrane.
Synonyms: ascospore-type prospore formation; forespore formation
ascospore-type prospore-specific spindle pole body remodeling (GO:0031322)
Namespace: biological_process
Definition: A spindle pole body (SPB) organization process that takes place during the second meiotic division during ascospore formation and results in the structural reorganization of the SPB; includes the recruitment of sporulation-specific proteins to the outer plaque to form the meiotic outer plaque (MOP).
Synonyms: ascospore-type prospore-specific spindle pole body modification; ascospore-type prospore-specific spindle pole body remodelling; forespore specific spindle pole body remodeling; forespore-specific spindle pole body remodeling; prospore-specific spindle pole body remodeling; sporulation-specific spindle pole body remodeling
obsolete regulation of cellular metabolic process (GO:0031323)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances.
Synonyms: regulation of cellular metabolism
Comment: The reason for obsoletion is that this term is redundant to GO:0019222, regulation of metabolic process
obsolete negative regulation of cellular metabolic process (GO:0031324)
Namespace: biological_process
Definition: OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances.
Synonyms: down regulation of cellular metabolic process; down-regulation of cellular metabolic process; downregulation of cellular metabolic process; inhibition of cellular metabolic process; negative regulation of cellular metabolism
Comment: The reason for obsoletion is that term is redundant to GO:0009892, negative regulation of metabolic process
obsolete positive regulation of cellular metabolic process (GO:0031325)
Namespace: biological_process
Definition: OBSOLETE. Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances.
Synonyms: activation of cellular metabolic process; positive regulation of cellular metabolism; stimulation of cellular metabolic process; up regulation of cellular metabolic process; up-regulation of cellular metabolic process; upregulation of cellular metabolic process
Comment: The reason for obsoletion is that this term is redundant to GO:0009893
obsolete regulation of cellular biosynthetic process (GO:0031326)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of substances, carried out by individual cells.
Synonyms: regulation of cellular anabolism; regulation of cellular biosynthesis; regulation of cellular formation; regulation of cellular synthesis
Comment: The reason for obsoletion is that this term is now redundant with GO:0009889, regulation of biosynthetic process
obsolete negative regulation of cellular biosynthetic process (GO:0031327)
Namespace: biological_process
Definition: OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of substances, carried out by individual cells.
Synonyms: down regulation of cellular biosynthetic process; down-regulation of cellular biosynthetic process; downregulation of cellular biosynthetic process; inhibition of cellular biosynthetic process; negative regulation of cellular anabolism; negative regulation of cellular biosynthesis; negative regulation of cellular formation; negative regulation of cellular synthesis
Comment: The reason for obsoletion is that this term is now redundant with GO:0009890, negative regulation of biosynthetic process
obsolete positive regulation of cellular biosynthetic process (GO:0031328)
Namespace: biological_process
Definition: OBSOLETE. Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of substances, carried out by individual cells.
Synonyms: activation of cellular biosynthetic process; positive regulation of cellular anabolism; positive regulation of cellular biosynthesis; positive regulation of cellular formation; positive regulation of cellular synthesis; stimulation of cellular biosynthetic process; up regulation of cellular biosynthetic process; up-regulation of cellular biosynthetic process; upregulation of cellular biosynthetic process
Comment: The reason for this obsoletion is that this term is now redundant to GO:0009892, positive regulation of biosynthetic process
obsolete regulation of cellular catabolic process (GO:0031329)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of substances, carried out by individual cells.
Synonyms: regulation of cellular breakdown; regulation of cellular catabolism; regulation of cellular degradation
Comment: The reason for obsoletion is that this term is now redundant with GO:0009894, regulation of catabolic process.
obsolete negative regulation of cellular catabolic process (GO:0031330)
Namespace: biological_process
Definition: OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of substances, carried out by individual cells.
Synonyms: down regulation of cellular catabolic process; down-regulation of cellular catabolic process; downregulation of cellular catabolic process; inhibition of cellular catabolic process; negative regulation of cellular breakdown; negative regulation of cellular catabolism; negative regulation of cellular degradation
Comment: The reason for obsoletion is that this term is redundant with GO:0009895, negative regulation of catabolic process.
obsolete positive regulation of cellular catabolic process (GO:0031331)
Namespace: biological_process
Definition: OBSOLETE. Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of substances, carried out by individual cells.
Synonyms: activation of cellular catabolic process; positive regulation of cellular breakdown; positive regulation of cellular catabolism; positive regulation of cellular degradation; stimulation of cellular catabolic process; up regulation of cellular catabolic process; up-regulation of cellular catabolic process; upregulation of cellular catabolic process
Comment: The reason for obsoletion is that this term is redundant to GO:0009896, postiive regulation of catabolic process
RNAi effector complex (GO:0031332)
Namespace: cellular_component
Definition: Any protein complex that mediates the effects of small interfering RNAs on gene expression. Most known examples contain one or more members of the Argonaute family of proteins.
negative regulation of protein-containing complex assembly (GO:0031333)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of protein complex assembly.
Synonyms: down regulation of protein complex assembly; down-regulation of protein complex assembly; downregulation of protein complex assembly; inhibition of protein complex assembly; negative regulation of protein complex assembly
positive regulation of protein-containing complex assembly (GO:0031334)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of protein complex assembly.
Synonyms: activation of protein complex assembly; positive regulation of protein complex assembly; stimulation of protein complex assembly; up regulation of protein complex assembly; up-regulation of protein complex assembly; upregulation of protein complex assembly
obsolete regulation of sulfur amino acid metabolic process (GO:0031335)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving sulfur amino acids.
Synonyms: regulation of sulfur amino acid metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
obsolete positive regulation of sulfur amino acid metabolic process (GO:0031337)
Namespace: biological_process
Definition: OBSOLETE. Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving sulfur amino acids.
Synonyms: activation of sulfur amino acid metabolic process; positive regulation of sulfur amino acid metabolism; stimulation of sulfur amino acid metabolic process; up regulation of sulfur amino acid metabolic process; up-regulation of sulfur amino acid metabolic process; upregulation of sulfur amino acid metabolic process
Comment: This term was obsoleted because it is an unnecessary grouping class.
regulation of vesicle fusion (GO:0031338)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of vesicle fusion.
negative regulation of vesicle fusion (GO:0031339)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of vesicle fusion.
Synonyms: down regulation of vesicle fusion; down-regulation of vesicle fusion; downregulation of vesicle fusion; inhibition of vesicle fusion
positive regulation of vesicle fusion (GO:0031340)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of vesicle fusion.
Synonyms: activation of vesicle fusion; stimulation of vesicle fusion; up regulation of vesicle fusion; up-regulation of vesicle fusion; upregulation of vesicle fusion
negative regulation of cell killing (GO:0031342)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of cell killing.
Synonyms: down regulation of cell killing; down-regulation of cell killing; downregulation of cell killing; inhibition of cell killing
positive regulation of cell killing (GO:0031343)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of cell killing.
Synonyms: activation of cell killing; stimulation of cell killing; up regulation of cell killing; up-regulation of cell killing; upregulation of cell killing
regulation of cell projection organization (GO:0031344)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of cell projections.
Synonyms: regulation of cell projection organisation; regulation of cell projection organization and biogenesis
negative regulation of cell projection organization (GO:0031345)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of cell projections.
Synonyms: down regulation of cell projection organization; down-regulation of cell projection organization; downregulation of cell projection organization; inhibition of cell projection organization; negative regulation of cell projection organisation; negative regulation of cell projection organization and biogenesis
positive regulation of cell projection organization (GO:0031346)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of the process involved in the formation, arrangement of constituent parts, or disassembly of cell projections.
Synonyms: activation of cell projection organization; positive regulation of cell projection organisation; positive regulation of cell projection organization and biogenesis; stimulation of cell projection organization; up regulation of cell projection organization; up-regulation of cell projection organization; upregulation of cell projection organization
regulation of defense response (GO:0031347)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of a defense response.
negative regulation of defense response (GO:0031348)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of a defense response.
Synonyms: down regulation of defense response; down-regulation of defense response; downregulation of defense response; inhibition of defense response
positive regulation of defense response (GO:0031349)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of a defense response.
Synonyms: activation of defense response; stimulation of defense response; up regulation of defense response; up-regulation of defense response; upregulation of defense response
obsolete intrinsic component of plastid membrane (GO:0031350)
Namespace: cellular_component
Definition: OBSOLETE. The component of the plastid membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.
Synonyms: intrinsic to plastid membrane
Comment: This term was obsoleted because it represents protein topology, not a cellular component.
obsolete integral component of plastid membrane (GO:0031351)
Namespace: cellular_component
Definition: OBSOLETE. The component of the plastid membrane consisting of the gene products having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Synonyms: integral to plastid membrane
Comment: This term was obsoleted because it represents protein topology, not a cellular component.
obsolete intrinsic component of plastid inner membrane (GO:0031352)
Namespace: cellular_component
Definition: OBSOLETE. The component of the plastid inner membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.
Synonyms: intrinsic to plastid inner membrane
Comment: This term was obsoleted because it represents protein topology, not a cellular component.
obsolete integral component of plastid inner membrane (GO:0031353)
Namespace: cellular_component
Definition: OBSOLETE. The component of the plastid inner membrane consisting of the gene products having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Synonyms: integral to plastid inner membrane
Comment: This term was obsoleted because it represents protein topology, not a cellular component.
obsolete intrinsic component of plastid outer membrane (GO:0031354)
Namespace: cellular_component
Definition: OBSOLETE. The component of the plastid outer membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.
Synonyms: intrinsic to plastid outer membrane
Comment: This term was obsoleted because it represents protein topology, not a cellular component.
obsolete integral component of plastid outer membrane (GO:0031355)
Namespace: cellular_component
Definition: OBSOLETE. The component of the plastid outer membrane consisting of the gene products having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Synonyms: integral to plastid outer membrane
Comment: This term was obsoleted because it represents protein topology, not a cellular component.