LiteFold/GO huggingface dataset:
detection of chemical stimulus involved in sensory perception of pain (GO:0050968)
Namespace: biological_process
Definition: The series of events involved in the perception of pain in which a chemical stimulus is received and converted into a molecular signal.
Synonyms: chemical nociception; perception of pain, detection of chemical stimulus; perception of pain, sensory detection of chemical stimulus; perception of pain, sensory transduction of chemical stimulus; sensory detection of chemical stimulus during perception of pain; sensory transduction of chemical stimulus during perception of pain
obsolete detection of chemical stimulus involved in magnetoreception (GO:0050969)
Namespace: biological_process
Definition: OBSOLETE. The series of events involved in magnetoception in which a chemical stimulus is received and converted into a molecular signal. It is believed that organisms such as birds and salamanders interpret product ratios in chemical reactions which involve transitions between different spin states.
Synonyms: magnetoception, sensory transduction of chemical stimulus; magnetoreception, detection of chemical stimulus; magnetoreception, sensory detection of chemical stimulus; magnetoreception, sensory transduction of chemical stimulus; sensory detection of chemical stimulus during magnetoreception; sensory transduction of chemical stimulus during magnetoreception
Comment: This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.
obsolete detection of electrical stimulus involved in magnetoreception (GO:0050970)
Namespace: biological_process
Definition: OBSOLETE. The series of events that contribute to magnetoception in which an electrical stimulus is received and converted into a molecular signal. The stimulus is in the form of an induced electric field resulting from movement in a magnetic field.
Synonyms: detection of electrical stimulus during magnetoreception; magnetoception, sensory transduction of electrical stimulus; magnetoreception, detection of electrical stimulus; magnetoreception, sensory detection of electrical stimulus; magnetoreception, sensory transduction of electrical stimulus; sensory detection of electrical stimulus during magnetoreception; sensory transduction of electrical stimulus during magnetoreception
Comment: This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.
obsolete detection of mechanical stimulus involved in echolocation (GO:0050972)
Namespace: biological_process
Definition: OBSOLETE. The series of events involved in echolocation in which a mechanical stimulus is received and converted into a molecular signal. The stimulus is in the form of a reflected sound wave (an echo), which the organism uses to determine the distance to the object that reflected the sound wave.
Synonyms: echolocation, detection of mechanical stimulus; echolocation, sensory detection of mechanical stimulus; echolocation, sensory transduction of mechanical stimulus; sensory detection of mechanical stimulus during echolocation; sensory transduction of mechanical stimulus during echolocation
Comment: This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.
detection of mechanical stimulus involved in equilibrioception (GO:0050973)
Namespace: biological_process
Definition: The series of events involved in equilibrioception in which a mechanical stimulus is received and converted into a molecular signal. During equilibrioception, mechanical stimuli may be in the form of input from pressure receptors or from the labyrinth system of the inner ears.
Synonyms: equilibrioception, detection of mechanical stimulus; equilibrioception, sensory detection of mechanical stimulus; equilibrioception, sensory transduction of mechanical stimulus; sensory detection of mechanical stimulus during equilibrioception; sensory transduction of mechanical stimulus during equilibrioception
detection of mechanical stimulus involved in sensory perception (GO:0050974)
Namespace: biological_process
Definition: The series of events in which a mechanical stimulus is received and converted into a molecular signal as part of sensory perception.
Synonyms: sensory detection of mechanical stimulus; sensory detection of mechanical stimulus during sensory perception; sensory perception, sensory detection of mechanical stimulus; sensory perception, sensory transduction of mechanical stimulus; sensory transduction of mechanical stimulus; sensory transduction of mechanical stimulus during sensory perception
detection of mechanical stimulus involved in sensory perception of touch (GO:0050976)
Namespace: biological_process
Definition: The series of events involved in the perception of touch in which a mechanical stimulus is received and converted into a molecular signal.
Synonyms: perception of touch, detection of mechanical stimulus; perception of touch, sensory detection of mechanical stimulus; perception of touch, sensory transduction of mechanical stimulus; sensory detection of mechanical stimulus during perception of touch; sensory transduction of mechanical stimulus during perception of touch; tactition, sensory detection of mechanical stimulus
magnetoreception by sensory perception of chemical stimulus (GO:0050977)
Namespace: biological_process
Definition: The series of events required for an organism to receive a chemical stimulus relating to a magnetic field, convert it to a molecular signal, and recognize and characterize the signal. It is believed that organisms such as birds and salamanders use a 'chemical compass': chemical reactions that involve transitions between different spin states can be influenced by magnetic fields and by detecting the different product ratios, these organisms can perceive the direction of the magnetic field. The mechanism by which this is detected is not certain but it may also involve light stimuli.
Synonyms: magnetoreception by chemical stimulus; magnetoreception through chemical stimulus; magnetoreception, sensory perception of chemical stimulus; magnetoreception, using chemical stimulus
magnetoreception by sensory perception of electrical stimulus (GO:0050978)
Namespace: biological_process
Definition: The series of events required for an organism to receive an electrical stimulus relating to a magnetic field, convert it to a molecular signal, and recognize and characterize the signal. Movement in a magnetic field results in an induced electric field, which can be perceived by organisms such as elasmobranch fish.
Synonyms: magnetoreception by electrical stimulus; magnetoreception through electrical stimulus; magnetoreception, sensory perception of electrical stimulus; magnetoreception, using electrical stimulus
magnetoreception by sensory perception of mechanical stimulus (GO:0050979)
Namespace: biological_process
Definition: The series of events required for an organism to receive a mechanical stimulus relating to a magnetic field, convert it to a molecular signal, and recognize and characterize the signal. A magnetic field exerts a torque on a ferromagnetic material (e.g. magnetite) or on a material with diamagnetic anisotropy; organisms that can detect this torque can use it to determine the orientation of the magnetic field.
Synonyms: magnetoreception through mechanical stimulus; magnetoreception, sensory perception of mechanical stimulus; magnetoreception, using mechanical stimulus
detection of light stimulus involved in magnetoreception (GO:0050980)
Namespace: biological_process
Definition: The series of events involved in magnetoception in which a light stimulus is received and converted into a molecular signal. Downstream processing of the light information in addition to other sensory data allows organisms to perceive the orientation of a magnetic field.
Synonyms: magnetoreception, detection of light stimulus; magnetoreception, sensory detection of light stimulus; magnetoreception, sensory transduction of light stimulus; sensory detection of light stimulus during magnetoreception; sensory transduction of light stimulus during magnetoreception
detection of electrical stimulus (GO:0050981)
Namespace: biological_process
Definition: The series of events by which an electrical stimulus is received and converted into a molecular signal.
detection of mechanical stimulus (GO:0050982)
Namespace: biological_process
Definition: The series of events by which a mechanical stimulus is received and converted into a molecular signal.
obsolete deoxyhypusine biosynthetic process from spermidine (GO:0050983)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions resulting in the formation of deoxyhypusine from spermidine by the enzyme [eIF-5A]-deoxyhypusine synthase. The reaction occurs in four steps: 1. spermidine + NAD+ = dehydrospermidine + NADH + H+; 2. dehydrospermidine + [enzyme]-lysine = 1,3-diaminopropane + [enzyme]-lysine-N6=CH(CH2)3NH2; 3. [enzyme]-lysine-N6=CH(CH2)3NH2 = [eIF-5A]-lysine-N6=CH(CH2)3NH2; 4. [eIF-5A]-lysine-N6=CH(CH2)3NH2 + NADH + H+ = [eIF-5A]-deoxyhypusine + NAD+.
Synonyms: deoxyhypusine anabolism from spermidine, using deoxyhypusine synthase; deoxyhypusine biosynthesis from spermidine, using deoxyhypusine synthase; deoxyhypusine biosynthetic process from spermidine, using deoxyhypusine synthase; deoxyhypusine formation from spermidine, using deoxyhypusine synthase; spermidine breakdown to deoxyhypusine, using deoxyhypusine synthase; spermidine catabolic process to deoxyhypusine, using deoxyhypusine synthase; spermidine degradation to deoxyhypusine, using deoxyhypusine synthase
Comment: The reason for obsoletion is that although GO:0050983 is described as a multistep process, the entire reaction is carried out by a single enzyme, therefore was replacey by the molecular function GO:0034038 deoxyhypusine synthase activity.
obsolete peptidyl-serine sulfation (GO:0050984)
Namespace: biological_process
Definition: OBSOLETE. The sulfation of peptidyl-serine to form peptidyl-O-sulfo-L-serine.
Comment: This term was obsoleted because it represents a molecular function.
obsolete peptidyl-threonine sulfation (GO:0050985)
Namespace: biological_process
Definition: OBSOLETE. The sulfation of peptidyl-threonine to form peptidyl-O-sulfo-L-threonine.
Comment: This term was obsoleted because it represents a molecular function.
obsolete isopeptide cross-linking via N-(L-isoglutamyl)-glycine (GO:0050986)
Namespace: biological_process
Definition: OBSOLETE. The formation of an isopeptide cross-link between peptidyl-glutamate and peptidyl-glycine to produce N-(L-isoglutamyl)-glycine, as found in the antibiotic microcin J25.
Comment: This term was obsoleted because it represents a molecular function.
obsolete enzyme active site formation via O-sulfo-L-serine (GO:0050987)
Namespace: biological_process
Definition: OBSOLETE. The transient sulfation of peptidyl-serine to form O-sulfo-L-serine.
Comment: This term was obsoleted because it was created by error: O-sulfo-L-serine is a post-translational modification, see PMID:14752058.
N-terminal protein amino acid carboxylation (GO:0050989)
Namespace: biological_process
Definition: The carboxylation of the N-terminal amino acid of proteins.
N-terminal protein amino acid carbamoylation (GO:0050990)
Namespace: biological_process
Definition: The carbamoylation of the N-terminal amino acid of proteins.
Synonyms: N-terminal protein amino acid carbamylation
obsolete enzyme active site formation via O-sulfo-L-threonine (GO:0050991)
Namespace: biological_process
Definition: OBSOLETE. The transient sulfation of peptidyl-threonine to form O-sulfo-L-threonine.
Comment: This term was obsoleted because it was created by error: O-sulfo-L-threonine is a post-translational modification, see PMID:14752058.
dimethylallyl diphosphate biosynthetic process (GO:0050992)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of dimethylallyl diphosphate.
Synonyms: dimethylallyl diphosphate anabolism; dimethylallyl diphosphate biosynthesis; dimethylallyl diphosphate formation; dimethylallyl diphosphate synthesis; dimethylallyl pyrophosphate biosynthesis; dimethylallyl pyrophosphate biosynthetic process; DPP biosynthesis; DPP biosynthetic process
dimethylallyl diphosphate metabolic process (GO:0050993)
Namespace: biological_process
Definition: The chemical reactions and pathways involving dimethylallyl diphosphate.
Synonyms: dimethylallyl diphosphate metabolism; dimethylallyl pyrophosphate metabolic process; dimethylallyl pyrophosphate metabolism; DPP metabolic process; DPP metabolism
negative regulation of lipid catabolic process (GO:0050995)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of lipids.
Synonyms: down regulation of lipid catabolic process; down-regulation of lipid catabolic process; downregulation of lipid catabolic process; inhibition of lipid catabolic process; negative regulation of lipid breakdown; negative regulation of lipid catabolism; negative regulation of lipid degradation
positive regulation of lipid catabolic process (GO:0050996)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of lipids.
Synonyms: activation of lipid catabolic process; positive regulation of lipid breakdown; positive regulation of lipid catabolism; positive regulation of lipid degradation; stimulation of lipid catabolic process; up regulation of lipid catabolic process; up-regulation of lipid catabolic process; upregulation of lipid catabolic process
quaternary ammonium group binding (GO:0050997)
Namespace: molecular_function
Definition: Binding to a quaternary ammonium group, including glycine betaine, choline, carnitine and proline. A quaternary ammonium group is any compound that can be regarded as derived from ammonium hydroxide or an ammonium salt by replacement of all four hydrogen atoms of the NH4+ ion by organic groups.
Synonyms: quaternary amine binding
negative regulation of nitric-oxide synthase activity (GO:0051001)
Namespace: biological_process
Definition: Any process that stops or reduces the activity of the enzyme nitric-oxide synthase.
Synonyms: down regulation of nitric-oxide synthase activity; down-regulation of nitric-oxide synthase activity; downregulation of nitric-oxide synthase activity; inhibition of nitric-oxide synthase activity; negative regulation of NOS activity; nitric-oxide synthase inhibitor; NOS inhibitor
ligase activity, forming nitrogen-metal bonds, forming coordination complexes (GO:0051003)
Namespace: molecular_function
Definition: Catalysis of the ligation of two substances via a nitrogen-metal bond, forming a coordination complex.
obsolete regulation of lipoprotein lipase activity (GO:0051004)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the activity of the enzyme lipoprotein lipase.
Comment: This term was obsoleted because it represents a molecular function.
negative regulation of lipoprotein lipase activity (GO:0051005)
Namespace: biological_process
Definition: Any process that stops or reduces the activity of the enzyme lipoprotein lipase.
Synonyms: down regulation of lipoprotein lipase activity; down-regulation of lipoprotein lipase activity; downregulation of lipoprotein lipase activity; inhibition of lipoprotein lipase activity
positive regulation of lipoprotein lipase activity (GO:0051006)
Namespace: biological_process
Definition: Any process that activates or increases the activity of the enzyme lipoprotein lipase.
Synonyms: activation of lipoprotein lipase activity; stimulation of lipoprotein lipase activity; up regulation of lipoprotein lipase activity; up-regulation of lipoprotein lipase activity; upregulation of lipoprotein lipase activity
squalene-hopene cyclase activity (GO:0051007)
Namespace: molecular_function
Definition: Catalysis of the reaction: squalene = hop-22(29)-ene.
Synonyms: squalene mutase (cyclizing); squalene:hopene cyclase activity
Hsp27 protein binding (GO:0051008)
Namespace: molecular_function
Definition: Binding to Hsp27 proteins, a lightweight heat shock protein.
O-acetylhomoserine sulfhydrylase activity (GO:0051009)
Namespace: molecular_function
Definition: Catalysis of the reaction: O-acetyl-L-homoserine + hydrogen sulfide = homocysteine + acetate.
Synonyms: homocysteine synthase
microtubule plus-end binding (GO:0051010)
Namespace: molecular_function
Definition: Binding to the plus end of a microtubule.
microtubule minus-end binding (GO:0051011)
Namespace: molecular_function
Definition: Binding to the minus end of a microtubule.
microtubule severing (GO:0051013)
Namespace: biological_process
Definition: The process in which a microtubule is broken down into smaller segments. Severing enzymes remove dimers from the middle of the filament to create new ends, unlike depolymerizing kinesins that use ATP to uncap microtubules at their ends.
Synonyms: microtubule severing activity
actin filament severing (GO:0051014)
Namespace: biological_process
Definition: The process in which an actin filament is broken down into smaller filaments.
Synonyms: actin filament severing activity; barbed-end actin capping/severing activity; F-actin severing
actin filament binding (GO:0051015)
Namespace: molecular_function
Definition: Binding to an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits.
Synonyms: actin cross-linking activity; F-actin binding
barbed-end actin filament capping (GO:0051016)
Namespace: biological_process
Definition: The binding of a protein or protein complex to the barbed (or plus) end of an actin filament, thus preventing the addition, exchange or removal of further actin subunits.
Synonyms: barbed-end actin capping activity; barbed-end F-actin capping activity; plus-end actin filament capping activity; plus-end F-actin capping activity
actin filament bundle assembly (GO:0051017)
Namespace: biological_process
Definition: The assembly of actin filament bundles; actin filaments are on the same axis but may be oriented with the same or opposite polarities and may be packed with different levels of tightness.
Synonyms: actin bundling activity; actin cable assembly; actin cable formation
protein kinase A binding (GO:0051018)
Namespace: molecular_function
Definition: Binding to a protein kinase A.
Synonyms: PKA binding; protein kinase A anchoring activity
Comment: Note that this term is a direct child of 'protein binding ; GO:0005515' because it encompasses binding to either the catalytic or regulatory subunit of protein kinase A, and the latter does not have kinase activity.
mitogen-activated protein kinase binding (GO:0051019)
Namespace: molecular_function
Definition: Binding to a mitogen-activated protein kinase.
Synonyms: MAP kinase binding; MAP-kinase anchoring activity; MAPK binding
GTPase binding (GO:0051020)
Namespace: molecular_function
Definition: Binding to a GTPase, any enzyme that catalyzes the hydrolysis of GTP.
GDP-dissociation inhibitor binding (GO:0051021)
Namespace: molecular_function
Definition: Binding to a GDP-dissociation inhibitor protein.
Synonyms: GDI binding
Rho GDP-dissociation inhibitor binding (GO:0051022)
Namespace: molecular_function
Definition: Binding to a Rho GDP-dissociation inhibitor protein.
Synonyms: Rho GDI binding
chiasma assembly (GO:0051026)
Namespace: biological_process
Definition: The cell cycle process in which a connection between chromatids assembles, indicating where an exchange of homologous segments has taken place by the crossing-over of non-sister chromatids.
DNA transport (GO:0051027)
Namespace: biological_process
Definition: The directed movement of RNA, deoxyribonucleic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
mRNA transport (GO:0051028)
Namespace: biological_process
Definition: The directed movement of mRNA, messenger ribonucleic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
rRNA transport (GO:0051029)
Namespace: biological_process
Definition: The directed movement of rRNA, ribosomal ribonucleic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
snRNA transport (GO:0051030)
Namespace: biological_process
Definition: The directed movement of snRNA, small nuclear ribonucleic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
tRNA transport (GO:0051031)
Namespace: biological_process
Definition: The directed movement of tRNA, transfer ribonucleic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
nucleic acid transmembrane transporter activity (GO:0051032)
Namespace: molecular_function
Definition: Enables the transfer of nucleic acids from one side of a membrane to the other. Nucleic acids are single or double-stranded polynucleotides involved in the storage, transmission and transfer of genetic information.
RNA transmembrane transporter activity (GO:0051033)
Namespace: molecular_function
Definition: Enables the transfer of RNA, ribonucleic acid, from one side of a membrane to the other.
tRNA transmembrane transporter activity (GO:0051034)
Namespace: molecular_function
Definition: Enables the transfer of tRNA, transfer ribonucleic acid, from one side of a membrane to the other.
DNA transmembrane transporter activity (GO:0051035)
Namespace: molecular_function
Definition: Enables the transfer of DNA, deoxyribonucleic acid, from one side of a membrane to the other.
regulation of endosome size (GO:0051036)
Namespace: biological_process
Definition: Any process that modulates the volume of an endosome, a membrane-bounded organelle that carries materials newly ingested by endocytosis.
Synonyms: endosome enlargement
obsolete regulation of transcription involved in meiotic cell cycle (GO:0051037)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of transcription as part of a meiotic cell cycle.
Synonyms: meiotic regulation of transcription; regulation of transcription, meiotic
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete negative regulation of transcription involved in meiotic cell cycle (GO:0051038)
Namespace: biological_process
Definition: OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of transcription involved in the meiotic cell cycle.
Synonyms: down regulation of transcription during meiosis; down-regulation of transcription during meiosis; downregulation of transcription during meiosis; inhibition of transcription during meiosis; meiotic repression of transcription; negative regulation of meiotic transcription; negative regulation of transcription, meiotic
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete positive regulation of transcription involved in meiotic cell cycle (GO:0051039)
Namespace: biological_process
Definition: OBSOLETE. Any process that activates or increases the frequency, rate or extent of transcription as part of a meiotic cell cycle.
Synonyms: activation of transcription during meiosis; positive regulation of meiotic transcription; positive regulation of transcription, meiotic; stimulation of transcription during meiosis; up regulation of transcription during meiosis; up-regulation of transcription during meiosis; upregulation of transcription during meiosis
Comment: This term was obsoleted because it represents a GO-CAM model.
regulation of calcium-independent cell-cell adhesion (GO:0051040)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the attachment of one cell to another cell via adhesion molecules that do not require the presence of calcium for the interaction.