LiteFold/GO huggingface dataset:
meiotic attachment of telomeric heterochromatin to spindle pole body (GO:0032121)
Namespace: biological_process
Definition: The meiotic cell cycle process in which physical connections are formed between telomeric heterochromatin and the spindle pole body, facilitating bouquet formation.
Synonyms: attachment of telomeres to spindle pole body; attachment of telomeric chromatin to spindle pole body
oral apparatus organization (GO:0032122)
Namespace: biological_process
Definition: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the oral apparatus. The oral apparatus is a funnel-like structure used by the cell to collect food and channel it to the cytostome, characteristic of ciliate protozoans.
Synonyms: oral apparatus morphogenesis; oral apparatus organisation; oral apparatus organization and biogenesis; stomatogenesis
deep fiber (GO:0032123)
Namespace: cellular_component
Definition: Inward projections of the cytoskeletal structures of the oral apparatus, which form a fiber that extends past the cytostome into the cytoplasm.
Synonyms: deep fibre
macronucleus organization (GO:0032124)
Namespace: biological_process
Definition: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the macronucleus.
Synonyms: macronuclear organization; macronuclear organization and biogenesis; macronucleus organisation
micronucleus organization (GO:0032125)
Namespace: biological_process
Definition: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the micronucleus.
Synonyms: micronuclear organization; micronuclear organization and biogenesis; micronucleus organisation
eisosome (GO:0032126)
Namespace: cellular_component
Definition: A cell part that is composed of the eisosome membrane or MCC domain, a furrow-like plasma membrane sub-domain and associated integral transmembrane proteins, and the proteins (eisosome filaments) that form a scaffolding lattice on the cytoplasmic face. Eisosomes broadly affect overall plasma membrane organization.
histone H3K9 deacetylase activity, hydrolytic mechanism (GO:0032129)
Namespace: molecular_function
Definition: Catalysis of the reaction: histone H3 N6-acetyl-L-lysine (position 9) + H2O = histone H3 L-lysine (position 9) + acetate. This reaction represents the removal of an acetyl group from lysine at position 9 of the histone H3 protein.
Synonyms: histone deacetylase activity (H3-K9 specific); histone H3-K9 deacetylase activity; histone H3K9 deacetylase activity
alkylated DNA binding (GO:0032131)
Namespace: molecular_function
Definition: Binding to an alkylated residue in DNA.
chromosome passenger complex (GO:0032133)
Namespace: cellular_component
Definition: A eukaryotically conserved protein complex that localizes to kinetochores in early mitosis, the spindle mid-zone in anaphase B and to the telophase midbody. It has been proposed that the passenger complex coordinates various events based on its location to different structures during the course of mitosis. Complex members include the BIR-domain-containing protein Survivin, Aurora kinase, INCENP and Borealin.
Synonyms: chromosomal passenger complex; CPC; CPC complex
DNA insertion or deletion binding (GO:0032135)
Namespace: molecular_function
Definition: Binding to a double-stranded DNA region containing an insertion or a deletion.
Synonyms: DNA insertion binding; insertion binding
adenine/cytosine mispair binding (GO:0032136)
Namespace: molecular_function
Definition: Binding to a double-stranded DNA region containing an A/C mispair.
Synonyms: A/C mispair binding; C/A mispair binding; cytosine/adenine mispair binding
single base insertion or deletion binding (GO:0032138)
Namespace: molecular_function
Definition: Binding to a double-stranded DNA region containing a single base insertion or deletion.
Synonyms: single base insertion binding
dinucleotide insertion or deletion binding (GO:0032139)
Namespace: molecular_function
Definition: Binding to a double-stranded DNA region containing a dinucleotide insertion or deletion.
Synonyms: dinucleotide insertion binding
single adenine insertion binding (GO:0032140)
Namespace: molecular_function
Definition: Binding to a double-stranded DNA region containing a single adenine insertion or a deletion that results in an unpaired adenine.
single cytosine insertion binding (GO:0032141)
Namespace: molecular_function
Definition: Binding to a double-stranded DNA region containing a single cytosine insertion or a deletion that results in an unpaired cytosine.
single guanine insertion binding (GO:0032142)
Namespace: molecular_function
Definition: Binding to a double-stranded DNA region containing a single guanine insertion or a deletion that results in an unpaired guanine.
single thymine insertion binding (GO:0032143)
Namespace: molecular_function
Definition: Binding to a double-stranded DNA region containing a single thymine insertion or a deletion that results in an unpaired thymine.
4-aminobutyrate transaminase complex (GO:0032144)
Namespace: cellular_component
Definition: A homodimeric protein complex that possesses 4-aminobutyrate transaminase activity.
Synonyms: ABAT complex; GABA transaminase complex; GABA-T complex
succinate-semialdehyde dehydrogenase binding (GO:0032145)
Namespace: molecular_function
Definition: Binding to succinate-semialdehyde dehydrogenase.
Synonyms: succinic semialdehyde dehydrogenase binding
activation of protein kinase activity (GO:0032147)
Namespace: biological_process
Definition: Any process that initiates the activity of an inactive protein kinase.
Synonyms: protein kinase activation
activation of protein kinase B activity (GO:0032148)
Namespace: biological_process
Definition: Any process that initiates the activity of the inactive enzyme protein kinase B.
Synonyms: protein kinase B activation
response to rhamnose (GO:0032149)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a rhamnose stimulus.
Synonyms: response to L-rhamnose stimulus; response to rhamnose stimulus
obsolete ubiquinone biosynthetic process from chorismate (GO:0032150)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of ubiquinone, beginning with the conversion of chorismate to 4-hydroxybenzoate.
Comment: The reason for obsoletion is that it is more specific than the specificity of any known gene product.
mitotic septin complex (GO:0032151)
Namespace: cellular_component
Definition: A heterooligomeric septin complex that acts during mitotic cell division.
meiotic septin complex (GO:0032152)
Namespace: cellular_component
Definition: A heterooligomeric septin complex that acts during meiotic cell division.
cell division site (GO:0032153)
Namespace: cellular_component
Definition: The eventual plane of cell division (also known as cell cleavage or cytokinesis) in a dividing cell. In Eukaryotes, the cleavage apparatus, composed of septin structures and the actomyosin contractile ring, forms along this plane, and the mitotic, or meiotic, spindle is aligned perpendicular to the division plane. In bacteria, the cell division site is generally located at mid-cell and is the site at which the cytoskeletal structure, the Z-ring, assembles.
Synonyms: cell division plane
Comment: Note that this term refers to the future site of division in a cell that has not yet divided.
obsolete cell division site part (GO:0032155)
Namespace: cellular_component
Definition: OBSOLETE. Any constituent part of the cell division plane, the eventual plane of cell division in a dividing cell.
Synonyms: cell division plane part
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
septin cytoskeleton (GO:0032156)
Namespace: cellular_component
Definition: The part of the cytoskeleton (the internal framework of a cell) composed of septins and associated proteins. Includes septin cytoskeleton-associated complexes.
prospore contractile ring (GO:0032157)
Namespace: cellular_component
Definition: A contractile ring, i.e. a cytoskeletal structure composed of actin filaments and myosin, that forms beneath the plasma membrane of the prospore envelope in meiotic cells in preparation for completing cytokinesis.
Synonyms: actomyosin ring; cytokinetic ring; meiotic contractile ring
septin band (GO:0032158)
Namespace: cellular_component
Definition: A diffuse ring composed of a series of septin bars that run parallel to the long axis of the cell. This type of septin structure has been observed in a number of locations associated with polarized grown and/or deposition of new membrane, but not with cytokinesis, such as at the shmoo (mating projection) neck, at the junction between the mother cell and the germ tube (hypha) of a fungal cell growing filamentously.
septin cap (GO:0032159)
Namespace: cellular_component
Definition: A faint structure formed of septins found at the leading edge of growth in germ tubes and hyphae in fungal cells growing filamentously. This cap of septins colocalizes with a region of the plasma membrane that is rich in ergosterol.
septin filament array (GO:0032160)
Namespace: cellular_component
Definition: Arrays of septin filaments, or bars, found in a series of filamentous structures. Such structures have been observed in the prospore membrane during spore formation in S. cerevisiae and in the chlamydospore membrane during chlamydospore formation in C. albicans.
Synonyms: septin bar
cleavage apparatus septin structure (GO:0032161)
Namespace: cellular_component
Definition: Any of a series of structures composed of septins and septin-associated proteins localized to the cleavage plane which are involved in cytokinesis.
mating projection septin band (GO:0032162)
Namespace: cellular_component
Definition: A septin band, i.e. a diffuse ring composed of a series of septin bars running parallel to the long axis of the cell, located at the neck of a shmoo (mating projection).
hyphal septin band (GO:0032163)
Namespace: cellular_component
Definition: A septin band, i.e. a diffuse ring composed of a series of septin bars running parallel to the long axis of the cell, located at the junction between the mother cell and the germ tube (hypha) of a fungal cell growing filamentously.
hyphal septin cap (GO:0032164)
Namespace: cellular_component
Definition: A faint structure formed of septins found at the leading edge of growth in hyphae of fungal cells growing filamentously. This cap of septins colocalizes with a region of the plasma membrane that is rich in ergosterol.
prospore septin filament array (GO:0032165)
Namespace: cellular_component
Definition: Arrays of septin filaments, or bars, found in a series of filamentous structures; observed in the prospore membrane during spore formation.
chlamydospore septin filament array (GO:0032166)
Namespace: cellular_component
Definition: Arrays of septin filaments, or bars, found in a series of filamentous structures. Observed in the chlamydospore membrane during chlamydospore formation.
obsolete septin patch (GO:0032167)
Namespace: cellular_component
Definition: OBSOLETE. An amorphous-appearing accumulation of septin proteins at the future site of cytokinesis.
Synonyms: septin patch
Comment: This term was made obsolete because it was added in error; it does not refer to a normal subcellular structure.
hyphal septin ring (GO:0032168)
Namespace: cellular_component
Definition: A tight ring-shaped structure that forms in the division plane within hyphae of filamentous fungi at sites where a septum will form; composed of septins as well as septin-associated proteins.
prospore septin ring (GO:0032169)
Namespace: cellular_component
Definition: A tight ring-shaped structure that forms in the division plane at the site of cytokinesis in a prospore; composed of septins as well as septin-associated proteins.
pseudohyphal septin ring (GO:0032170)
Namespace: cellular_component
Definition: A tight ring-shaped structure that forms in the division plane at the junction between the mother cell and a pseudohyphal projection; composed of septins as well as septin-associated proteins.
germ tube septin ring (GO:0032172)
Namespace: cellular_component
Definition: A tight ring-shaped structure that forms in the division plane within the germ tube of filamentous fungi at sites where a septum will form; composed of septins as well as septin-associated proteins.
septin collar (GO:0032173)
Namespace: cellular_component
Definition: A tubular, hourglass-shaped structure composed of highly ordered arrays of septin filaments; in budding yeast cells, the septin collar forms from the initial septin ring by expanding into the daughter cell.
Synonyms: septin hourglass
cellular bud neck septin collar (GO:0032174)
Namespace: cellular_component
Definition: A tubular structure with flared ends, shaped like an hourglass and composed of highly ordered arrays of septin filaments, that forms at the bud neck of a dividing cell. In S. cerevisiae, this structure is located at the bud neck throughout most of the cell cycle and the septins are fixed within the structure, not exchanging with soluble septins. This septin structure acts as a scaffold for other proteins that function at the bud neck.
mating projection septin ring (GO:0032175)
Namespace: cellular_component
Definition: A septin ring, i.e. a ring-shaped structure composed of septins and septin-associated proteins, located at the neck of a shmoo (mating projection). The septin ring in the neck of a shmoo may act as a barrier to localize mating factors in the shmoo tip.
split septin rings (GO:0032176)
Namespace: cellular_component
Definition: A pair of rings that flank the site of cell division, formed by splitting of the septin ring (or collar) prior to cytokinesis; this double ring structure is thought to trap proteins needed for cytokinesis or the formation of the new membrane or cell wall between the two septin rings. Split septin rings are known to occur in budding yeast cells and probably occur in other cell types as well.
cellular bud neck split septin rings (GO:0032177)
Namespace: cellular_component
Definition: Two separate septin rings that are formed from the septin collar at the time of cytokinesis in cells that divide by budding. These two rings are thought to delineate a special compartment in which factors involved in cytokinesis are concentrated.
medial membrane band (GO:0032178)
Namespace: cellular_component
Definition: A sterol-rich region of the plasma membrane which forms at the cell surface overlying the contractile ring and spreads into the invaginating plasma membrane surrounding the septum.
Synonyms: sterol-rich membrane band
germ tube (GO:0032179)
Namespace: cellular_component
Definition: The slender tubular outgrowth first produced by most spores in germination.
dinucleotide repeat insertion binding (GO:0032181)
Namespace: molecular_function
Definition: Binding to a double-stranded DNA region containing a dinucleotide repeat insertion or a deletion resulting in unpaired dinucleotide repeats.
ubiquitin-like protein binding (GO:0032182)
Namespace: molecular_function
Definition: Binding to a small conjugating protein such as ubiquitin or a ubiquitin-like protein.
Synonyms: small conjugating protein binding
SUMO binding (GO:0032183)
Namespace: molecular_function
Definition: Binding to the small ubiquitin-like protein SUMO.
Synonyms: Smt3 binding; Smt3 monomer binding
septin cytoskeleton organization (GO:0032185)
Namespace: biological_process
Definition: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising septin complexes and their associated proteins.
Synonyms: septin cytoskeleton organisation; septin cytoskeleton organization and biogenesis
cellular bud neck septin ring organization (GO:0032186)
Namespace: biological_process
Definition: Control of the formation, spatial distribution, and breakdown of a septin ring located at the bud neck.
Synonyms: cellular bud neck septin ring organisation
obsolete actomyosin contractile ring localization (GO:0032187)
Namespace: biological_process
Definition: OBSOLETE. The process in which a contractile ring is positioned or maintained in a specific location, in the context of cytokinesis that takes place as part of a cell cycle.
Synonyms: contractile ring localisation involved in cell cycle cytokinesis; contractile ring localization involved in cell cycle cytokinesis
Comment: The reason for obsoletion is that this represents a phenotype.
obsolete establishment of actomyosin contractile ring localization (GO:0032188)
Namespace: biological_process
Definition: OBSOLETE. The process in which a contractile ring is assembled in a specific location as part of a process of cell cycle cytokinesis.
Synonyms: actomyosin ring positioning; contractile ring positioning; cytokinesis site selection by contractile ring positioning; establishment of contractile ring localisation involved in cell cycle cytokinesis; establishment of contractile ring localization involved in cell cycle cytokinesis; establishment of contractile ring localization involved in cytokinesis during cell cycle
Comment: The reason for obsoletion is that the term is represented in another branch (merge)
obsolete maintenance of actomyosin contractile ring localization (GO:0032189)
Namespace: biological_process
Definition: OBSOLETE. Any process in which an actomyosin contractile ring is maintained in a location and prevented from moving elsewhere.
Synonyms: cytokinetic ring anchoring; maintenance of contractile ring localisation involved in cell cycle cytokinesis; maintenance of contractile ring localization involved in cell cycle cytokinesis; maintenance of contractile ring localization involved in cytokinesis during cell cycle
Comment: The reason for obsoletion is that this represents a phenotype.
acrosin binding (GO:0032190)
Namespace: molecular_function
Definition: Binding to acrosin, a protein that is found in the acrosomes of sperm and possesses protease and carbohydrate binding activities.
Synonyms: acrosin heavy chain binding; acrosin light chain binding
obsolete ubiquinone biosynthetic process via 2-polyprenylphenol (GO:0032193)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of ubiquinone, via the intermediates 2-polyprenylphenol and 2-polyprenyl-6-hydroxyphenol.
Comment: The reason for obsoletion is that it is more specific than the specificity of any known gene product.
post-lysosomal vacuole (GO:0032195)
Namespace: cellular_component
Definition: A membrane-bounded intracellular vesicle formed late in the endocytic pathway when the pH in the vacuole becomes neutral prior to exocytosis.
Synonyms: post-lysosome; postlysosome
transposition (GO:0032196)
Namespace: biological_process
Definition: Any process involved in mediating the movement of discrete segments of DNA between nonhomologous sites. For elements that are transcribed as the first step of transposition, the process starts with the transcription of the transposable element, its translation and maturation, and ending with integration into DNA. For elements that are cut out, the process starts with the excision of the donor DNA and integrated into another site.
obsolete MITE transposition (GO:0032198)
Namespace: biological_process
Definition: OBSOLETE. Any process involved in the transposition of miniature inverted-repeat transposable elements (MITEs).
Comment: This term was obsoleted because it represents a specific substrate.
obsolete reverse transcription involved in RNA-mediated transposition (GO:0032199)
Namespace: biological_process
Definition: OBSOLETE. The synthesis of DNA from an RNA transposon intermediate.
Synonyms: reverse transcription during retrotransposition
Comment: This term was obsoleted because it represents a molecular function.
telomere organization (GO:0032200)
Namespace: biological_process
Definition: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of telomeres, terminal regions of a linear chromosome that include the telomeric DNA repeats and associated proteins.
Synonyms: chromosome organization, telomeric; organization of chromosome, telomeric region; telomere organisation; telomere organization and biogenesis
telomere maintenance via semi-conservative replication (GO:0032201)
Namespace: biological_process
Definition: The process in which telomeric DNA is synthesized semi-conservatively by the conventional replication machinery and telomeric accessory factors as part of cell cycle DNA replication.
Synonyms: equal telomere replication; telomeric fork progression; telomeric replication fork progression
telomere assembly (GO:0032202)
Namespace: biological_process
Definition: A cellular process that results in the aggregation, arrangement and bonding together of a set of components to form a telomere at a non-telomeric double-stranded DNA end. A telomere is a terminal region of a linear chromosome that includes telomeric DNA repeats and associated proteins.
Synonyms: telomere formation
telomere formation via telomerase (GO:0032203)
Namespace: biological_process
Definition: A cellular process that results in the formation of a telomere at a non-telomeric double-stranded DNA end that involves the activity of a telomerase enzyme.
regulation of telomere maintenance (GO:0032204)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of a process that affects and monitors the activity of telomeric proteins and the length of telomeric DNA.
negative regulation of telomere maintenance (GO:0032205)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of a process that affects and monitors the activity of telomeric proteins and the length of telomeric DNA.
Synonyms: down regulation of telomere maintenance; down-regulation of telomere maintenance; downregulation of telomere maintenance; inhibition of telomere maintenance
positive regulation of telomere maintenance (GO:0032206)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of a process that affects and monitors the activity of telomeric proteins and the length of telomeric DNA.
Synonyms: activation of telomere maintenance; stimulation of telomere maintenance; up regulation of telomere maintenance; up-regulation of telomere maintenance; upregulation of telomere maintenance
regulation of telomere maintenance via recombination (GO:0032207)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of a recombinational process involved in the maintenance of proper telomeric length.
positive regulation of telomere maintenance via recombination (GO:0032209)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of a recombinational process involved in the maintenance of proper telomeric length.
Synonyms: activation of telomere maintenance via recombination; stimulation of telomere maintenance via recombination; up regulation of telomere maintenance via recombination; up-regulation of telomere maintenance via recombination; upregulation of telomere maintenance via recombination
regulation of telomere maintenance via telomerase (GO:0032210)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the addition of telomeric repeats by telomerase.