LiteFold/GO huggingface dataset:
response to high light intensity (GO:0009644)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a high light intensity stimulus.
response to absence of light (GO:0009646)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an absence of light stimuli.
Synonyms: response to darkness
skotomorphogenesis (GO:0009647)
Namespace: biological_process
Definition: The control of plant growth, development, and differentiation in response to growth in darkness.
Synonyms: etiolation
photoperiodism (GO:0009648)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a period of light or dark of a given length, measured relative to a particular duration known as the 'critical day length'. The critical day length varies between species.
Synonyms: response to day length; response to night length; response to photoperiod
entrainment of circadian clock (GO:0009649)
Namespace: biological_process
Definition: The synchronization of a circadian rhythm to environmental time cues such as light.
Synonyms: regulation of circadian rhythm phase
UV protection (GO:0009650)
Namespace: biological_process
Definition: Any process in which an organism or cell protects itself from ultraviolet radiation (UV), which may also result in resistance to repeated exposure to UV.
Synonyms: ultraviolet protection; ultraviolet resistance; ultraviolet tolerance; UV resistance; UV tolerance
response to salt stress (GO:0009651)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
Synonyms: response to ionic osmotic stress; salinity response
thigmotropism (GO:0009652)
Namespace: biological_process
Definition: The movement of an organism, or part of an organism, such as leaves or tendrils, in response to a touch stimulus, usually toward or away from it.
anatomical structure morphogenesis (GO:0009653)
Namespace: biological_process
Definition: The process in which anatomical structures are generated and organized. Morphogenesis pertains to the creation of form.
Synonyms: anatomical structure organization; embryogenesis and morphogenesis; morphogenesis
photosystem II oxygen evolving complex (GO:0009654)
Namespace: cellular_component
Definition: A complex, composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins, that catalyzes the splitting of water to O2 and 4 H+. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ).
Synonyms: OEC (PSII) complex; oxygen evolving complex
PSII associated light-harvesting complex II, core complex (GO:0009655)
Namespace: cellular_component
Definition: The pigment-protein complex primarily associated to PSII in higher plants, green algae and cyanobacteria that directly transfers electrons to the reaction center.
Synonyms: PSII associated light-harvesting complex II, core complex, LHCIIa subcomplex; PSII associated light-harvesting complex II, core complex, LHCIIc subcomplex; PSII associated light-harvesting complex II, core complex, LHCIId subcomplex
PSII associated light-harvesting complex II, peripheral complex (GO:0009656)
Namespace: cellular_component
Definition: Pigment-protein complex primarily associated to PSII in plants, green algae and cyanobacteria. Involved in state transitions that cause migration to PSI under certain environmental conditions such as high light.
plastid organization (GO:0009657)
Namespace: biological_process
Definition: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a plastid.
Synonyms: plastid organisation; plastid organization and biogenesis
chloroplast organization (GO:0009658)
Namespace: biological_process
Definition: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the chloroplast.
Synonyms: chloroplast organisation; chloroplast organization and biogenesis
leucoplast organization (GO:0009659)
Namespace: biological_process
Definition: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a leucoplast. A leucoplast is a colorless plastid involved in the synthesis of monoterpenes.
Synonyms: leucoplast organisation; leucoplast organization and biogenesis
amyloplast organization (GO:0009660)
Namespace: biological_process
Definition: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an amyloplast. An amyloplast is a plastid whose main function is to synthesize and store starch.
Synonyms: amyloplast organisation; amyloplast organization and biogenesis
chromoplast organization (GO:0009661)
Namespace: biological_process
Definition: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the chromoplast. A chromoplast is a plastid containing pigments other than chlorophyll, usually yellow and orange carotenoid pigments.
Synonyms: chromoplast organisation; chromoplast organization and biogenesis
etioplast organization (GO:0009662)
Namespace: biological_process
Definition: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an etioplast. An etioplast is a plastid arrested in the development of chloroplasts from proplastids due to absence of light or low light conditions.
Synonyms: etioplast organisation; etioplast organization and biogenesis
plasmodesma organization (GO:0009663)
Namespace: biological_process
Definition: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a plasmodesma, a fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell.
Synonyms: plasmodesma organisation; plasmodesma organization and biogenesis; plasmodesmata organization and biogenesis
plant-type cell wall organization (GO:0009664)
Namespace: biological_process
Definition: A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana.
Synonyms: cell wall organization and biogenesis; cellulose and pectin-containing cell wall organization and biogenesis; plant-type cell wall organisation; plant-type cell wall organization and biogenesis
plastid inheritance (GO:0009665)
Namespace: biological_process
Definition: The partitioning of plastids between daughter cells at cell division.
plastid inner membrane organization (GO:0009667)
Namespace: biological_process
Definition: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the inner membrane of a plastid.
Synonyms: plastid inner membrane organisation; plastid inner membrane organization and biogenesis
plastid membrane organization (GO:0009668)
Namespace: biological_process
Definition: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of either of the lipid bilayers surrounding a plastid.
Synonyms: plastid membrane organisation; plastid membrane organization and biogenesis
sucrose:monoatomic cation symporter activity (GO:0009669)
Namespace: molecular_function
Definition: Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sucrose(out) + monovalent cation(out) = sucrose(in) + monovalent cation(in).
Synonyms: sucrose permease activity; sucrose:cation symporter activity; sucrose:monovalent cation symporter activity
triose-phosphate:phosphate antiporter activity (GO:0009670)
Namespace: molecular_function
Definition: Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: triose-phosphate(out) + phosphate(in) = triose-phosphate(in) + phosphate(out).
Synonyms: dihydroxyacetone phosphate:phosphate antiporter activity; TPT; triose phosphate antiporter; triose phosphate translocator
nitrate:proton symporter activity (GO:0009671)
Namespace: molecular_function
Definition: Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: nitrate(out) + H+(out) = nitrate(in) + H+(in).
Synonyms: nitrate(chlorate):hydrogen symporter activity; nitrate(chlorate):proton symporter activity; nitrate:hydrogen symporter activity
low-affinity phosphate transmembrane transporter activity (GO:0009673)
Namespace: molecular_function
Definition: Enables the transfer of phosphate from one side of a membrane to the other. In low-affinity transport the transporter is able to bind the solute only if it is present at very high concentrations.
Synonyms: low affinity phosphate transmembrane transporter activity
potassium:sodium symporter activity (GO:0009674)
Namespace: molecular_function
Definition: Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: K+(out) + Na+(out) = K+(in) + Na+(in).
Synonyms: high affinity potassium transporter
high-affinity sulfate:proton symporter activity (GO:0009675)
Namespace: molecular_function
Definition: Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sulfate(out) + H+(out) = sulfate(in) + H+(in). In high-affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations.
Synonyms: high affinity sulfate:hydrogen symporter activity; high affinity sulfate:proton symporter activity; high affinity sulphate:hydrogen symporter activity
low-affinity sulfate:proton symporter activity (GO:0009676)
Namespace: molecular_function
Definition: Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sulfate(out) + H+(out) = sulfate(in) + H+(in). In low-affinity transport the transporter is able to bind the solute only if it is present at very high concentrations.
Synonyms: low affinity sulfate:hydrogen symporter activity; low affinity sulfate:proton symporter activity; low affinity sulphate:hydrogen symporter activity
diphosphate hydrolysis-driven proton transmembrane transporter activity (GO:0009678)
Namespace: molecular_function
Definition: Catalysis of the reaction: diphosphate + H+(in) + H2O = 2 H+(out) + 2 phosphate.
Synonyms: H+-exporting diphosphatase; hydrogen-translocating pyrophosphatase activity; PP(i) hydrolysis-driven proton transmembrane transporter activity; proton-pumping diphosphatase; proton-pumping pyrophosphatase; proton-translocating pyrophosphatase activity; pyrophosphate hydrolysis-driven proton transmembrane transporter activity
hexose:proton symporter activity (GO:0009679)
Namespace: molecular_function
Definition: Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: hexose(out) + H+(out) = hexose(in) + H+(in).
Synonyms: hexose:hydrogen symporter activity
induced systemic resistance (GO:0009682)
Namespace: biological_process
Definition: A response to non-pathogenic bacteria that confers broad spectrum systemic resistance to disease that does not depend upon salicylic acid signaling.
obsolete indoleacetic acid metabolic process (GO:0009683)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving indole-3-acetic acid, a compound which functions as a growth regulator in plants.
Synonyms: IAA metabolic process; indole acetic acid metabolic process; indole acetic acid metabolism; indoleacetic acid metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
indoleacetic acid biosynthetic process (GO:0009684)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of indole-3-acetic acid, a compound which functions as a growth regulator in plants.
Synonyms: IAA biosynthetic process; indole acetic acid biosynthesis; indole acetic acid biosynthetic process; indole-3-acetate biosynthesis; indole-3-acetate biosynthetic process; indole-acetic acid biosynthesis; indole-acetic acid biosynthetic process; indoleacetic acid anabolism; indoleacetic acid biosynthesis; indoleacetic acid formation; indoleacetic acid synthesis
gibberellin metabolic process (GO:0009685)
Namespace: biological_process
Definition: The chemical reactions and pathways involving gibberellin. Gibberellins are a class of highly modified terpenes that function as plant growth regulators.
Synonyms: gibberellic acid metabolic process; gibberellic acid metabolism; gibberellin metabolism
gibberellin biosynthetic process (GO:0009686)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of gibberellin. Gibberellins are a class of highly modified terpenes that function as plant growth regulators.
Synonyms: gibberellic acid anabolism; gibberellic acid biosynthesis; gibberellic acid biosynthetic process; gibberellic acid formation; gibberellic acid synthesis; gibberellin biosynthesis
abscisic acid metabolic process (GO:0009687)
Namespace: biological_process
Definition: The chemical reactions and pathways involving abscisic acid, 5-(1-hydroxy-2,6,6,trimethyl-4-oxocyclohex-2-en-1-y1)-3-methylpenta-2,4-dienoic acid.
Synonyms: abscisic acid metabolism
abscisic acid biosynthetic process (GO:0009688)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of abscisic acid, 5-(1-hydroxy-2,6,6,trimethyl-4-oxocyclohex-2-en-1-y1)-3-methylpenta-2,4-dienoic acid.
Synonyms: abscisic acid anabolism; abscisic acid biosynthesis; abscisic acid formation; abscisic acid synthesis
obsolete induction of phytoalexin biosynthetic process (GO:0009689)
Namespace: biological_process
Definition: OBSOLETE. The activation of the chemical reactions and pathways resulting in the formation of phytoalexins, low-molecular mass, lipophilic antimicrobial compounds that accumulate rapidly at sites of incompatible pathogen infection.
Synonyms: induction of phytoalexin anabolism; induction of phytoalexin biosynthesis; induction of phytoalexin formation; induction of phytoalexin synthesis
Comment: This term was obsoleted because it represents the same process as positive regulation of phytoalexin biosynthetic process ; GO:0052322.
cytokinin metabolic process (GO:0009690)
Namespace: biological_process
Definition: The chemical reactions and pathways involving cytokinins, a class of adenine-derived compounds that can function in plants as growth regulators.
Synonyms: cytokinin metabolism
cytokinin biosynthetic process (GO:0009691)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of cytokinins, a class of adenine-derived compounds that can function in plants as growth regulators.
Synonyms: cytokinin anabolism; cytokinin biosynthesis; cytokinin formation; cytokinin synthesis
ethylene metabolic process (GO:0009692)
Namespace: biological_process
Definition: The chemical reactions and pathways involving ethylene (C2-H4, ethene), a simple hydrocarbon gas that can function in plants as a growth regulator.
Synonyms: ethene metabolic process; ethene metabolism; ethylene metabolism
ethylene biosynthetic process (GO:0009693)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of ethylene (C2-H4, ethene), a simple hydrocarbon gas that can function in plants as a growth regulator.
Synonyms: ethene biosynthesis; ethene biosynthesis from L-methionine; ethene biosynthetic process; ethene biosynthetic process from L-methionine; ethylene anabolism; ethylene biosynthesis; ethylene biosynthesis from L-methionine; ethylene biosynthetic process from L-methionine; ethylene formation; ethylene synthesis
jasmonic acid metabolic process (GO:0009694)
Namespace: biological_process
Definition: The chemical reactions and pathways involving jasmonic acid, a fatty acid derivative with the formula (1R-(1 alpha, 2 beta(Z)))-3-oxo-2-(2-pentenyl)cyclopentaneacetic acid.
Synonyms: jasmonic acid metabolism
jasmonic acid biosynthetic process (GO:0009695)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of jasmonic acid, a fatty acid derivative.
Synonyms: jasmonic acid anabolism; jasmonic acid biosynthesis; jasmonic acid formation; jasmonic acid synthesis
salicylic acid metabolic process (GO:0009696)
Namespace: biological_process
Definition: The chemical reactions and pathways involving of salicylic acid (2-hydroxybenzoic acid), a derivative of benzoic acid.
Synonyms: salicylic acid metabolism
salicylic acid biosynthetic process (GO:0009697)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of salicylic acid (2-hydroxybenzoic acid), a derivative of benzoic acid.
Synonyms: salicylate biosynthetic process; salicylic acid anabolism; salicylic acid biosynthesis; salicylic acid formation; salicylic acid synthesis
phenylpropanoid metabolic process (GO:0009698)
Namespace: biological_process
Definition: The chemical reactions and pathways involving aromatic derivatives of trans-cinnamic acid.
Synonyms: phenylpropanoid metabolism
phenylpropanoid biosynthetic process (GO:0009699)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of aromatic derivatives of trans-cinnamic acid.
Synonyms: phenylpropanoid anabolism; phenylpropanoid biosynthesis; phenylpropanoid formation; phenylpropanoid synthesis
indole phytoalexin biosynthetic process (GO:0009700)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of indole phytoalexins, any indole compound produced by plants as part of their defense response.
Synonyms: indole phytoalexin anabolism; indole phytoalexin biosynthesis; indole phytoalexin formation; indole phytoalexin synthesis
isoflavonoid phytoalexin biosynthetic process (GO:0009701)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of isoflavonoid phytoalexins, a group of water-soluble phenolic derivatives isomeric with flavonoids that possess antibiotic activity and are produced by plant tissues in response to infection.
Synonyms: isoflavonoid phytoalexin anabolism; isoflavonoid phytoalexin biosynthesis; isoflavonoid phytoalexin formation; isoflavonoid phytoalexin synthesis
L-arabinokinase activity (GO:0009702)
Namespace: molecular_function
Definition: Catalysis of the reaction: L-arabinose + ATP = beta-L-arabinose 1-phosphate + ADP + 2 H+.
Synonyms: ATP:L-arabinose 1-phosphotransferase activity; L-arabinokinase (phosphorylating)
nitrate reductase (NADH) activity (GO:0009703)
Namespace: molecular_function
Definition: Catalysis of the reaction: nitrite + NAD+ + H2O = nitrate + NADH + H+.
Synonyms: assimilatory NADH: nitrate reductase activity; assimilatory NADH:nitrate reductase activity; assimilatory nitrate reductase activity; NADH-dependent nitrate reductase activity; NADH-nitrate reductase activity; NADH:nitrate oxidoreductase activity; NADH:nitrate reductase activity; nitrate reductase (NADH(2)) activity; nitrate reductase (NADH2); nitrite:NAD+ oxidoreductase activity
de-etiolation (GO:0009704)
Namespace: biological_process
Definition: The greening response of plants grown in the dark (etiolated) as a result of chloroplast biogenesis and the accumulation of chlorophyll.
plant-type vacuole membrane (GO:0009705)
Namespace: cellular_component
Definition: The lipid bilayer surrounding a vacuole that retains the same shape regardless of cell cycle phase. The membrane separates its contents from the cytoplasm of the cell. An example of this component is found in Arabidopsis thaliana.
Synonyms: membrane of vacuole with cell cycle-independent morphology; tonoplast; vacuolar membrane
chloroplast inner membrane (GO:0009706)
Namespace: cellular_component
Definition: The inner, i.e. lumen-facing, lipid bilayer of the chloroplast envelope; also faces the chloroplast stroma.
Synonyms: chloroplast inner envelope
chloroplast outer membrane (GO:0009707)
Namespace: cellular_component
Definition: The outer, i.e. cytoplasm-facing, lipid bilayer of the chloroplast envelope.
Synonyms: chloroplast outer envelope
benzyl isoquinoline alkaloid biosynthetic process (GO:0009708)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of benzyl isoquinoline alkaloids, compounds with bicyclic N-containing aromatic rings.
Synonyms: benzyl isoquinoline alkaloid anabolism; benzyl isoquinoline alkaloid biosynthesis; benzyl isoquinoline alkaloid formation; benzyl isoquinoline alkaloid synthesis
terpenoid indole alkaloid biosynthetic process (GO:0009709)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of terpenoid indole alkaloids, compounds formed from the condensation of tryptamine (derived from tryptophan) and secologanin (derived from geranyl pyrophosphate).
Synonyms: terpenoid indole alkaloid anabolism; terpenoid indole alkaloid biosynthesis; terpenoid indole alkaloid formation; terpenoid indole alkaloid synthesis
tropane alkaloid biosynthetic process (GO:0009710)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of tropane alkaloids, compounds containing the 8-methyl-8-azabicyclo(3.2.1)octane ring system.
Synonyms: tropane alkaloid anabolism; tropane alkaloid biosynthesis; tropane alkaloid formation; tropane alkaloid synthesis
purine alkaloid biosynthetic process (GO:0009711)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of purine alkaloids, compounds derived from purine and composed of an N-containing double ring structure.
Synonyms: purine alkaloid anabolism; purine alkaloid biosynthesis; purine alkaloid formation; purine alkaloid synthesis
catechol-containing compound metabolic process (GO:0009712)
Namespace: biological_process
Definition: The chemical reactions and pathways involving a compound containing a pyrocatechol (1,2-benzenediol) nucleus or substituent.
Synonyms: catechol metabolic process; catechol metabolism
catechol-containing compound biosynthetic process (GO:0009713)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of catechol-containing compounds. Catechol is a compound containing a pyrocatechol nucleus or substituent.
Synonyms: catechol anabolism; catechol biosynthesis; catechol biosynthetic process; catechol formation; catechol synthesis
obsolete chalcone metabolic process (GO:0009714)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving chalcones, phenyl steryl ketone or its hydroxylated derivatives.
Synonyms: chalcone metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
chalcone biosynthetic process (GO:0009715)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of chalcone, phenyl steryl ketone or its hydroxylated derivatives.
Synonyms: chalcone anabolism; chalcone biosynthesis; chalcone formation; chalcone synthesis