LiteFold/GO huggingface dataset:
regulation of fungal-type cell wall biogenesis (GO:0032995)
Namespace: biological_process
Definition: Any process that modulates the process in which a cell wall is synthesized, aggregates, and bonds together. The fungal-type cell wall contains beta-glucan and may contain chitin.
Synonyms: regulation of chitin- and beta-glucan-containing cell wall biogenesis
Bcl3-Bcl10 complex (GO:0032996)
Namespace: cellular_component
Definition: A protein complex containing Bcl3 and Bcl10, which forms when Akt1 is activated by TNF-alpha to phosphorylate Bcl10; the Bcl3-Bcl10 complex is translocated to the nucleus.
Fc receptor complex (GO:0032997)
Namespace: cellular_component
Definition: A protein complex composed of a subunit or subunits capable of binding the Fc portion of an immunoglobulin with additional signaling components. The complex functions as a receptor for immunoglobulin.
Synonyms: Fc-receptor complex; FcR complex; immunoglobulin receptor complex
Fc-alpha receptor I complex (GO:0032999)
Namespace: cellular_component
Definition: A protein complex composed of an Fc-alpha R alpha chain and an Fc-epsilon RI gamma chain dimer with or without additional signaling components. The complex functions primarily as an activating receptor for IgA.
Synonyms: FcaRI complex; IgA receptor complex; immunoglobulin A receptor complex
Fc-gamma receptor I complex (GO:0033000)
Namespace: cellular_component
Definition: A protein complex composed of an Fc-gamma RI alpha chain and an Fc-epsilon RI gamma chain dimer with or without additional signaling components. The complex functions primarily as an activating receptor for IgG.
Synonyms: FcgRI complex; IgG receptor complex; immunoglobulin G receptor complex
Fc-gamma receptor III complex (GO:0033001)
Namespace: cellular_component
Definition: A protein complex composed of an Fc-gamma RIII alpha chain and an Fc-epsilon RI gamma chain dimer with or without an Fc-epsilon RI beta chain and additional signaling components. The complex functions primarily as an activating receptor for IgG.
Synonyms: FcgRIII complex; IgG receptor complex; immunoglobulin G receptor complex
muscle cell proliferation (GO:0033002)
Namespace: biological_process
Definition: The expansion of a muscle cell population by cell division.
Synonyms: myocyte proliferation
regulation of mast cell activation (GO:0033003)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate, or extent of mast cell activation.
negative regulation of mast cell activation (GO:0033004)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate, or extent of mast cell activation.
positive regulation of mast cell activation (GO:0033005)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate, or extent of mast cell activation.
obsolete regulation of mast cell activation involved in immune response (GO:0033006)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate, or extent of mast cell activation as part of an immune response.
Synonyms: regulation of mast cell activation during immune response
Comment: This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.
negative regulation of mast cell activation involved in immune response (GO:0033007)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate, or extent of mast cell activation as part of an immune response.
Synonyms: negative regulation of mast cell activation during immune response
positive regulation of mast cell activation involved in immune response (GO:0033008)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate, or extent of mast cell activation as part of an immune response.
Synonyms: positive regulation of mast cell activation during immune response
nucleomorph (GO:0033009)
Namespace: cellular_component
Definition: A small, vestigial nucleus found in some plastids that derive from a eukaryotic endosymbiont. Observed in chlorarachniophytes and cryptomonads, which acquired their plastids from a green and red alga respectively.
paranodal junction (GO:0033010)
Namespace: cellular_component
Definition: A highly specialized cell-cell junction found in vertebrates, which forms between a neuron and a glial cell, and has structural similarity to Drosophila septate junctions. It flanks the node of Ranvier in myelinated nerve and electrically isolates the myelinated from unmyelinated nerve segments and physically separates the voltage-gated sodium channels at the node from the cluster of potassium channels underneath the myelin sheath.
Synonyms: axoglial septate junction; paranodal axoglial junction; paranodal septate junction
perinuclear theca (GO:0033011)
Namespace: cellular_component
Definition: A condensed cytoplasmic structure that covers the nucleus of mammalian spermatozoa except for a narrow zone around the insertion of the tail. It shows two distinct regions, a subacrosomal layer and, continuing caudally beyond the acrosomic system, the postacrosomal sheath. The perinuclear theca has been considered a cytoskeletal scaffold responsible for maintaining the overall architecture of the mature sperm head; however, recent studies indicate that the bulk of its constituent proteins are not traditional cytoskeletal proteins but rather a variety of cytosolic proteins.
porosome (GO:0033012)
Namespace: cellular_component
Definition: A permanent cup-shaped structure at the cell plasma membrane in secretory cells. Following a secretory stimulus, secretory vesicles transiently dock and fuse at the base of porosomes and release intravesicular contents dictated by the turgor pressure generated from the swelling of secretory vesicles.
tetrapyrrole metabolic process (GO:0033013)
Namespace: biological_process
Definition: The chemical reactions and pathways involving tetrapyrroles, natural pigments containing four pyrrole rings joined by one-carbon units linking position 2 of one pyrrole ring to position 5 of the next.
Synonyms: tetrapyrrole metabolism
tetrapyrrole biosynthetic process (GO:0033014)
Namespace: biological_process
Definition: The chemical reactions and pathways leading to the formation of tetrapyrroles, natural pigments containing four pyrrole rings joined by one-carbon units linking position 2 of one pyrrole ring to position 5 of the next.
Synonyms: tetrapyrrole anabolism; tetrapyrrole biosynthesis; tetrapyrrole formation; tetrapyrrole synthesis
rhoptry membrane (GO:0033016)
Namespace: cellular_component
Definition: The lipid bilayer surrounding a rhoptry.
sarcoplasmic reticulum membrane (GO:0033017)
Namespace: cellular_component
Definition: The lipid bilayer surrounding the sarcoplasmic reticulum.
sarcoplasmic reticulum lumen (GO:0033018)
Namespace: cellular_component
Definition: The volume enclosed by the membranes of the sarcoplasmic reticulum.
obsolete cyclopentanol metabolic process (GO:0033020)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving cyclopentanol.
Synonyms: cyclopentanol metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
cyclopentanol biosynthetic process (GO:0033021)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of cyclopentanol.
Synonyms: cyclopentanol anabolism; cyclopentanol biosynthesis; cyclopentanol formation; cyclopentanol synthesis
cyclopentanol catabolic process (GO:0033022)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of cyclopentanol.
Synonyms: cyclopentanol breakdown; cyclopentanol catabolism; cyclopentanol degradation
mast cell apoptotic process (GO:0033024)
Namespace: biological_process
Definition: Any apoptotic process in a mast cell, a cell that is found in almost all tissues containing numerous basophilic granules and capable of releasing large amounts of histamine and heparin upon activation.
Synonyms: apoptosis of mast cells; mast cell apoptosis
negative regulation of mast cell apoptotic process (GO:0033026)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate, or extent of mast cell apoptotic process.
Synonyms: down regulation of mast cell apoptosis; down-regulation of mast cell apoptosis; downregulation of mast cell apoptosis; inhibition of mast cell apoptosis; negative regulation of mast cell apoptosis
positive regulation of mast cell apoptotic process (GO:0033027)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate, or extent of mast cell apoptotic process.
Synonyms: activation of mast cell apoptosis; positive regulation of mast cell apoptosis; stimulation of mast cell apoptosis; up regulation of mast cell apoptosis; up-regulation of mast cell apoptosis; upregulation of mast cell apoptosis
regulation of neutrophil apoptotic process (GO:0033029)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate, or extent of neutrophil apoptotic process.
Synonyms: regulation of neutrophil apoptosis
negative regulation of neutrophil apoptotic process (GO:0033030)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate, or extent of neutrophil apoptotic process.
Synonyms: down regulation of neutrophil apoptosis; down-regulation of neutrophil apoptosis; downregulation of neutrophil apoptosis; inhibition of neutrophil apoptosis; negative regulation of neutrophil apoptosis
positive regulation of neutrophil apoptotic process (GO:0033031)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate, or extent of neutrophil apoptotic process.
Synonyms: activation of neutrophil apoptosis; positive regulation of neutrophil apoptosis; stimulation of neutrophil apoptosis; up regulation of neutrophil apoptosis; up-regulation of neutrophil apoptosis; upregulation of neutrophil apoptosis
regulation of myeloid cell apoptotic process (GO:0033032)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate, or extent of myeloid cell apoptotic process.
Synonyms: regulation of myeloid cell apoptosis
negative regulation of myeloid cell apoptotic process (GO:0033033)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate, or extent of a myeloid cell apoptotic process.
Synonyms: down regulation of myeloid cell apoptosis; down-regulation of myeloid cell apoptosis; downregulation of myeloid cell apoptosis; inhibition of myeloid cell apoptosis; negative regulation of myeloid cell apoptosis
positive regulation of myeloid cell apoptotic process (GO:0033034)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate, or extent of myeloid cell apoptotic process.
Synonyms: activation of myeloid cell apoptosis; positive regulation of myeloid cell apoptosis; stimulation of myeloid cell apoptosis; up regulation of myeloid cell apoptosis; up-regulation of myeloid cell apoptosis; upregulation of myeloid cell apoptosis
macromolecule localization (GO:0033036)
Namespace: biological_process
Definition: Any process in which a macromolecule is transported to, or maintained in, a specific location.
Synonyms: macromolecule localisation
bitter taste receptor activity (GO:0033038)
Namespace: molecular_function
Definition: Combining with soluble bitter compounds to initiate a change in cell activity. These receptors are responsible for the sense of bitter taste.
ionotropic salty taste receptor activity (GO:0033039)
Namespace: molecular_function
Definition: Enables the transmembrane transfer of an ion by a channel that opens when a soluble salty compound has been bound by the channel complex or one of its constituent parts.
sour taste receptor activity (GO:0033040)
Namespace: molecular_function
Definition: Combining with soluble sour compounds to initiate a change in cell activity. These receptors are responsible for the sense of sour taste.
sweet taste receptor activity (GO:0033041)
Namespace: molecular_function
Definition: Combining with soluble sweet compounds to initiate a change in cell activity. These receptors are responsible for the sense of sweet taste.
umami taste receptor activity (GO:0033042)
Namespace: molecular_function
Definition: Combining with soluble umami compounds to initiate a change in cell activity. These receptors are responsible for the sense of umami taste, the savory taste of meats and other foods that are rich in glutamates.
regulation of organelle organization (GO:0033043)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of an organelle.
Synonyms: regulation of organelle organisation; regulation of organelle organization and biogenesis
regulation of chromosome organization (GO:0033044)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of a chromosome.
Synonyms: regulation of chromosome organisation; regulation of chromosome organization and biogenesis
regulation of sister chromatid segregation (GO:0033045)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of sister chromatid segregation.
negative regulation of sister chromatid segregation (GO:0033046)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of sister chromatid segregation.
regulation of mitotic sister chromatid segregation (GO:0033047)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of sister chromatid segregation during mitosis.
negative regulation of mitotic sister chromatid segregation (GO:0033048)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of sister chromatid segregation during mitosis.
obsolete clavulanic acid metabolic process (GO:0033049)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving clavulanic acid, (2R,3Z,5R)-3-(2-hydroxyethylidene)-7-oxo-4-oxa-1-azabicyclo[3.2.0]heptane-2-carboxylic acid.
Synonyms: clavulanic acid metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
clavulanic acid biosynthetic process (GO:0033050)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of clavulanic acid, (2R,3Z,5R)-3-(2-hydroxyethylidene)-7-oxo-4-oxa-1-azabicyclo[3.2.0]heptane-2-carboxylic acid.
Synonyms: clavulanic acid anabolism; clavulanic acid biosynthesis; clavulanic acid formation; clavulanic acid synthesis
aminophosphonate metabolic process (GO:0033051)
Namespace: biological_process
Definition: The chemical reactions and pathways involving aminophosphonates, phosphonic acid derivatives that contain an amino group.
Synonyms: aminophosphonate metabolism
obsolete cyanoamino acid metabolic process (GO:0033052)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving cyanoamino acids, amino acid derivatives that contain a cyanide group.
Synonyms: cyanoamino acid metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
obsolete D-glutamine metabolic process (GO:0033053)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving D-glutamine, the D-enantiomer of the amino acid glutamine, i.e. (2R)-2,5-diamino-5-oxopentanoic acid.
Synonyms: D-glutamine metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
obsolete D-glutamate metabolic process (GO:0033054)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving D-glutamate, the D-enantiomer of the amino acid glutamate, i.e. (2R)-2-aminopentanedioic acid.
Synonyms: D-glutamate metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
obsolete D-arginine metabolic process (GO:0033055)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving D-arginine, the D-enantiomer of the amino acid arginine, i.e. (2R)-2-amino-5-(carbamimidamido)pentanoic acid.
Synonyms: D-arginine metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
obsolete D-ornithine metabolic process (GO:0033056)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving D-ornithine, the D-enantiomer of the amino acid ornithine, i.e. (2R)-2,5-diaminopentanoic acid.
Synonyms: D-ornithine metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
directional locomotion (GO:0033058)
Namespace: biological_process
Definition: Self-propelled movement of a cell or organism from one location to another along an axis.
cellular pigmentation (GO:0033059)
Namespace: biological_process
Definition: The deposition or aggregation of coloring matter in a cell.
ocellus pigmentation (GO:0033060)
Namespace: biological_process
Definition: The deposition or aggregation of coloring matter in an ocellus, a minute simple eye found in many invertebrates.
DNA recombinase mediator complex (GO:0033061)
Namespace: cellular_component
Definition: A protein complex containing accessory proteins which bind a recombinase (e.g. Rad51) and bind single-stranded DNA (ssDNA), and promote nucleation of the recombinase onto ssDNA through facilitating recombinase-RPA exchange.
Comment: Many paralogs of Rad51 act as recombinase mediators. These paralogs dimerize (or occasionally form tetramers) amongst themselves to form complexes with ssDNA-binding activity, and which act as mediators of Rad51 presynaptic filament assembly.
Rad51B-Rad51C-Rad51D-XRCC2 complex (GO:0033063)
Namespace: cellular_component
Definition: A DNA recombinase mediator complex that contains the Rad51 paralogs RAD51B, RAD51C, RAD51D, and XRCC2, or orthologs thereof.
Synonyms: BCDX2 complex
XRCC2-RAD51D complex (GO:0033064)
Namespace: cellular_component
Definition: A heterodimeric DNA recombinase mediator complex that contains the Rad51 paralogs RAD51D and XRCC2, or orthologs thereof; conserved from fission yeast to human but absent from budding yeast.
Synonyms: DX2 complex
Rad51C-XRCC3 complex (GO:0033065)
Namespace: cellular_component
Definition: A DNA recombinase mediator complex that contains the Rad51 paralogs RAD51C and XRCC3, or orthologs thereof.
Synonyms: CX3 complex; Rad55-Rad57 complex; Rhp55-Rhp57 complex
Rad51B-Rad51C complex (GO:0033066)
Namespace: cellular_component
Definition: A DNA recombinase mediator complex that contains the Rad51 paralogs RAD51B and RAD51C, or orthologs thereof.
Synonyms: BC complex
macrolide metabolic process (GO:0033067)
Namespace: biological_process
Definition: The chemical reactions and pathways involving macrolides, any of a large group of polyketide compounds that contain a large lactone ring with few or no double bonds and no nitrogen atoms, linked glycosidically to one or more sugar groups. The macrolides include the carbomycins, the erythromycins, oleandomycin, oligomycins, and the spiramycins, and act as antibiotics, mainly against Gram-positive bacteria.
Synonyms: macrolide metabolism
macrolide biosynthetic process (GO:0033068)
Namespace: biological_process
Definition: The chemical reactions and pathways leading to the formation of macrolides, any of a large group of polyketide compounds that contain a large lactone ring with few or no double bonds and no nitrogen atoms, linked glycosidically to one or more sugar groups. The macrolides include the carbomycins, the erythromycins, oleandomycin, oligomycins, and the spiramycins, and act as antibiotics, mainly against Gram-positive bacteria.
Synonyms: macrolide anabolism; macrolide biosynthesis; macrolide formation; macrolide synthesis
obsolete ansamycin metabolic process (GO:0033069)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving ansamycins, any of a group of complex macrolactam compounds characterized by a cyclic structure in which an aliphatic ansa chain forms a bridge between two non-adjacent positions of a cyclic p-system; many exhibit antibacterial, antifungal or antitumor activity.
Synonyms: ansamycin metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
obsolete vancomycin metabolic process (GO:0033071)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving vancomycin, (3S,6R,7R,11R,23S,26S,30aS,36R,38aR)-44-[2-O-(3-amino-2,3,6-trideoxy-3-C-methyl-alpha-L-lyxo-hexopyranosyl)-beta-D-glucopyranosyloxy]-3-(carbamoylmethyl)-10,19-dichloro-2,3,4,5,6,7,23,25,26,36,37,38,38a-tetradecahydro-7,22,28,30,32-pentahydroxy-6-(N-methyl-D-leucyl)-2,5,24,38,39-pentaoxo-1H,22H-23,36-(epiminomethano)-8,11:18,21-dietheno-13,16:31,35-di(metheno)[1,6,9]oxadiazacyclohexadecino[4,5-m][10,2,16]benzoxadiazacyclotetracosine-26-carboxylic acid, a complex glycopeptide from Streptomyces orientalis that inhibits a specific step in the synthesis of the peptidoglycan layer in Gram-positive bacteria.
Synonyms: vancomycin metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
vancomycin biosynthetic process (GO:0033072)
Namespace: biological_process
Definition: The chemical reactions and pathways leading to the formation of vancomycin, (3S,6R,7R,11R,23S,26S,30aS,36R,38aR)-44-[2-O-(3-amino-2,3,6-trideoxy-3-C-methyl-alpha-L-lyxo-hexopyranosyl)-beta-D-glucopyranosyloxy]-3-(carbamoylmethyl)-10,19-dichloro-2,3,4,5,6,7,23,25,26,36,37,38,38a-tetradecahydro-7,22,28,30,32-pentahydroxy-6-(N-methyl-D-leucyl)-2,5,24,38,39-pentaoxo-1H,22H-23,36-(epiminomethano)-8,11:18,21-dietheno-13,16:31,35-di(metheno)[1,6,9]oxadiazacyclohexadecino[4,5-m][10,2,16]benzoxadiazacyclotetracosine-26-carboxylic acid, a complex glycopeptide from Streptomyces orientalis that inhibits a specific step in the synthesis of the peptidoglycan layer in Gram-positive bacteria.
Synonyms: vancomycin anabolism; vancomycin biosynthesis; vancomycin formation; vancomycin synthesis
pinene metabolic process (GO:0033073)
Namespace: biological_process
Definition: The chemical reactions and pathways involving the monoterpenoid pinene; alpha-pinene is (1S,5S)-2,6,6-trimethylbicyclo[3.1.1]hept-2-ene, and beta-pinene is (1S,5S)-6,6-dimethyl-2-methylenebicyclo[3.1.1]heptane.
Synonyms: pinene metabolism
pinene catabolic process (GO:0033074)
Namespace: biological_process
Definition: The chemical reactions and pathways leading to the breakdown of the monoterpenoid pinene; alpha-pinene is (1S,5S)-2,6,6-trimethylbicyclo[3.1.1]hept-2-ene, and beta-pinene is (1S,5S)-6,6-dimethyl-2-methylenebicyclo[3.1.1]heptane.
Synonyms: pinene breakdown; pinene catabolism; pinene degradation
isoquinoline alkaloid biosynthetic process (GO:0033075)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of isoquinoline alkaloids, alkaloid compounds that contain bicyclic N-containing aromatic rings and are derived from a 3,4-dihydroxytyramine (dopamine) precursor that undergoes a Schiff base addition with aldehydes of different origin.
Synonyms: ipecac alkaloid biosynthesis; isoquinoline alkaloid anabolism; isoquinoline alkaloid biosynthesis; isoquinoline alkaloid formation; isoquinoline alkaloid synthesis
isoquinoline alkaloid metabolic process (GO:0033076)
Namespace: biological_process
Definition: The chemical reactions and pathways involving isoquinoline alkaloids, alkaloid compounds that contain bicyclic N-containing aromatic rings and are derived from a 3,4-dihydroxytyramine (dopamine) precursor that undergoes a Schiff base addition with aldehydes of different origin.
Synonyms: ipecac alkaloid metabolism; isoquinoline alkaloid metabolism