LiteFold/GO huggingface dataset:
regulation of mitotic cell cycle, embryonic (GO:0009794)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of replication and segregation of genetic material in the embryo.
Synonyms: embryonic mitotic cell cycle modulation; embryonic mitotic cell cycle regulation; embryonic mitotic cell cycle regulator; modulation of embryonic mitotic cell cycle progression; regulation of embryonic mitotic cell cycle; regulation of embryonic mitotic cell cycle progression; regulation of progression through embryonic mitotic cell cycle
axis specification (GO:0009798)
Namespace: biological_process
Definition: The establishment, maintenance and elaboration of a pattern along a line or around a point.
Synonyms: axis determination
cinnamic acid biosynthetic process (GO:0009800)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of cinnamic acid, 3-phenyl-2-propenoic acid.
Synonyms: cinnamic acid anabolism; cinnamic acid biosynthesis; cinnamic acid formation; cinnamic acid synthesis; cinnamylic acid biosynthesis; cinnamylic acid biosynthetic process; phenylacrylic acid biosynthesis; phenylacrylic acid biosynthetic process; phenylpropenoic acid biosynthesis; phenylpropenoic acid biosynthetic process
cinnamic acid ester metabolic process (GO:0009801)
Namespace: biological_process
Definition: The chemical reactions and pathways involving ester derivatives of cinnamic acid, phenylpropenoic acid.
Synonyms: cinnamic acid ester metabolism
cinnamic acid ester biosynthetic process (GO:0009802)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of ester derivatives of cinnamic acid, phenylpropenoic acid.
Synonyms: cinnamic acid ester anabolism; cinnamic acid ester biosynthesis; cinnamic acid ester formation; cinnamic acid ester synthesis; cinnamylic acid ester biosynthesis; cinnamylic acid ester biosynthetic process; phenylacrylic acid ester biosynthesis; phenylacrylic acid ester biosynthetic process
cinnamic acid metabolic process (GO:0009803)
Namespace: biological_process
Definition: The chemical reactions and pathways involving cinnamic acid, 3-phenyl-2-propenoic acid.
Synonyms: cinnamic acid metabolism; cinnamylic acid metabolic process; cinnamylic acid metabolism; phenylacrylic acid metabolic process; phenylacrylic acid metabolism; phenylpropenoic acid metabolic process; phenylpropenoic acid metabolism
coumarin metabolic process (GO:0009804)
Namespace: biological_process
Definition: The chemical reactions and pathways involving coumarins, compounds derived from the phenylacrylic skeleton of cinnamic acids.
Synonyms: coumarin metabolism
coumarin biosynthetic process (GO:0009805)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of coumarins, a class of compounds derived from the phenylacrylic skeleton of cinnamic acids.
Synonyms: coumarin anabolism; coumarin biosynthesis; coumarin formation; coumarin synthesis
lignan metabolic process (GO:0009806)
Namespace: biological_process
Definition: The chemical reactions and pathways involving lignans, any member of a class of plant metabolites related to lignins. Lignans are usually found as phenylpropanoid dimers in which the phenylpropanoid units are linked tail to tail and thus having a 2,3 dibenzylbutane skeleton, but higher oligomers can also exist.
Synonyms: lignan metabolism
lignan biosynthetic process (GO:0009807)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of lignans, any member of a class of plant metabolites related to lignins. Lignans are usually found as phenylpropanoid dimers in which the phenylpropanoid units are linked tail to tail and thus having a 2,3 dibenzylbutane skeleton, but higher oligomers can also exist.
Synonyms: lignan anabolism; lignan biosynthesis; lignan formation; lignan synthesis
lignin metabolic process (GO:0009808)
Namespace: biological_process
Definition: The chemical reactions and pathways involving lignins, a class of polymers of phenylpropanoid units.
Synonyms: lignin metabolism
lignin biosynthetic process (GO:0009809)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of lignins, a class of polymers formed by the dehydrogenetive radical polymerization of various phenylpropanoid monomers.
Synonyms: lignin anabolism; lignin biosynthesis; lignin formation; lignin synthesis
obsolete stilbene metabolic process (GO:0009810)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving stilbenes, a class of polyketides formed from a molecule of cinnamic acid and three molecules of malonyl-CoA.
Synonyms: stilbene metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
stilbene biosynthetic process (GO:0009811)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of stilbenes, a class of polyketide compounds formed from cinnamic acid and three molecules of malonyl CoA.
Synonyms: stilbene anabolism; stilbene biosynthesis; stilbene formation; stilbene synthesis
flavonoid metabolic process (GO:0009812)
Namespace: biological_process
Definition: The chemical reactions and pathways involving flavonoids, a group of water-soluble phenolic derivatives containing a flavan skeleton including flavones, flavonols and flavanoids, and anthocyanins.
Synonyms: flavonoid metabolism
flavonoid biosynthetic process (GO:0009813)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of flavonoids, a group of phenolic derivatives containing a flavan skeleton.
Synonyms: flavonoid anabolism; flavonoid biosynthesis; flavonoid formation; flavonoid synthesis
1-aminocyclopropane-1-carboxylate oxidase activity (GO:0009815)
Namespace: molecular_function
Definition: Catalysis of the reaction: 1-aminocyclopropane-1-carboxylate + L-ascorbate + O2 = CO2 + dehydroascorbate + ethylene + 2 H2O + hydrogen cyanide. Ethene is also known as ethylene.
Synonyms: 1-aminocyclopropane-1-carboxylate oxygenase (ethylene-forming); ACC oxidase activity; aminocyclopropanecarboxylate oxidase activity; ethene-forming enzyme; ethylene-forming enzyme
drought recovery (GO:0009819)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of prolonged deprivation of water that restores that organism to a normal (non-stressed) condition.
Synonyms: drought tolerance
alkaloid metabolic process (GO:0009820)
Namespace: biological_process
Definition: The chemical reactions and pathways involving alkaloids, nitrogen containing natural products which are not otherwise classified as peptides, nonprotein amino acids, amines, cyanogenic glycosides, glucosinolates, cofactors, phytohormones or primary metabolites (such as purine or pyrimidine bases).
Synonyms: alkaloid metabolism
alkaloid biosynthetic process (GO:0009821)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of alkaloids, nitrogen-containing natural products which are not otherwise classified as nonprotein amino acids, amines, peptides, amines, cyanogenic glycosides, glucosinolates, cofactors, phytohormones, or primary metabolite (such as purine or pyrimidine bases).
Synonyms: alkaloid anabolism; alkaloid biosynthesis; alkaloid formation; alkaloid synthesis
alkaloid catabolic process (GO:0009822)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of alkaloids, nitrogen containing natural products not otherwise classified as peptides, nonprotein amino acids, amines, cyanogenic glycosides, glucosinolates, cofactors, phytohormones or primary metabolites (such as purine or pyrimidine bases).
Synonyms: alkaloid breakdown; alkaloid catabolism; alkaloid degradation
cytokinin catabolic process (GO:0009823)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of cytokinins, a class of adenine-derived compounds that can function in plants as plant growth regulators.
Synonyms: cytokinin breakdown; cytokinin catabolism; cytokinin degradation
AMP dimethylallyltransferase activity (GO:0009824)
Namespace: molecular_function
Definition: Catalysis of the reaction: AMP + dimethylallyl diphosphate = N(6)-(dimethylallyl)adenosine 5'-phosphate + diphosphate.
Synonyms: 2-isopentenyl-diphosphate:AMP 2-isopentenyltransferase activity; 2-isopentenyl-diphosphate:AMP delta2-isopentenyltransferase activity; adenylate dimethylallyltransferase (AMP-dependent) activity; adenylate dimethylallyltransferase activity; adenylate isopentenyltransferase activity; cytokinin synthase activity; dimethylallyl-diphosphate:AMP dimethylallyltransferase activity; isopentenyltransferase activity
multidimensional cell growth (GO:0009825)
Namespace: biological_process
Definition: The process in which a cell irreversibly increases in size in two or three [spatial] dimensions or along two or three axes.
Synonyms: cell growth in three dimensions; cell growth in two dimensions
unidimensional cell growth (GO:0009826)
Namespace: biological_process
Definition: The process in which a cell irreversibly increases in size in one [spatial] dimension or along one axis, resulting in the morphogenesis of the cell.
Synonyms: cell elongation; cell growth along one axis; cell growth in one dimension; cell morphogenesis by unidimensional growth; polar cell growth; polarized cell growth
Comment: Unidimensional cell growth refers to a change in both cell size and cell shape. For cell shape changes where cell size is not affected, consider instead the term 'regulation of cell shape ; GO:0008360' and its children.
plant-type cell wall modification (GO:0009827)
Namespace: biological_process
Definition: The series of events leading to chemical and structural alterations of an existing cellulose and pectin-containing cell wall that can result in loosening, increased extensibility or disassembly. An example of this is found in Arabidopsis thaliana.
Synonyms: cellulose and pectin-containing cell wall modification
plant-type cell wall loosening (GO:0009828)
Namespace: biological_process
Definition: The series of events causing chemical and structural alterations of an existing cellulose and pectin-containing cell wall that results in greater extensibility of the wall. An example of this is found in Arabidopsis thaliana.
Synonyms: cellulose and pectin-containing cell wall loosening
cell wall modification involved in fruit ripening (GO:0009829)
Namespace: biological_process
Definition: The series of events resulting in chemical or structural alterations of existing cell walls that contribute to fruit ripening.
Synonyms: cell wall modification during ripening
cell wall modification involved in abscission (GO:0009830)
Namespace: biological_process
Definition: A cellular process that results in the breakdown of the cell wall that contributes to the process of abscission.
Synonyms: cell wall modification during abscission
plant-type cell wall modification involved in multidimensional cell growth (GO:0009831)
Namespace: biological_process
Definition: The series of events that occur during cell growth that result in chemical or structural changes to existing cell walls of the type composed chiefly of cellulose and pectin. An example of this is found in Arabidopsis thaliana.
Synonyms: cell wall modification during cell expansion; cellulose and pectin-containing cell wall modification during multidimensional cell growth
plant-type cell wall biogenesis (GO:0009832)
Namespace: biological_process
Definition: A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cellulose and pectin-containing cell wall. An example of this is found in Arabidopsis thaliana.
Synonyms: cell wall anabolism; cell wall assembly; cell wall biosynthetic process; cell wall formation; cell wall synthesis; cellulose and pectin-containing cell wall biogenesis
plant-type primary cell wall biogenesis (GO:0009833)
Namespace: biological_process
Definition: A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of cellulose and pectin-containing cell walls that form adjacent to the middle lamella following cell division and during cell expansion. An example of this is found in Arabidopsis thaliana.
Synonyms: cellulose and pectin-containing primary cell wall biogenesis; primary cell wall anabolism; primary cell wall biogenesis; primary cell wall biosynthetic process; primary cell wall formation; primary cell wall synthesis
plant-type secondary cell wall biogenesis (GO:0009834)
Namespace: biological_process
Definition: A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of inextensible cellulose- and pectin-containing cell walls that are formed between the plasma membrane and primary cell wall after cell expansion is complete. An example of this is found in Arabidopsis thaliana.
Synonyms: cellulose and pectin-containing secondary cell wall biogenesis; secondary cell wall anabolism; secondary cell wall biogenesis; secondary cell wall biosynthetic process; secondary cell wall formation; secondary cell wall synthesis
fruit ripening (GO:0009835)
Namespace: biological_process
Definition: An developmental maturation process that has as participant a fruit. Ripening causes changes in one or more characteristics of a fruit (color, aroma, flavor, texture, hardness, cell wall structure) and may make it more attractive to animals and aid in seed dispersal.
Synonyms: fruit maturation; fruit senescence
fruit ripening, climacteric (GO:0009836)
Namespace: biological_process
Definition: A fruit ripening process that involves a burst of respiration and ethylene (ethene) evolution at the onset.
fruit ripening, non-climacteric (GO:0009837)
Namespace: biological_process
Definition: A fruit ripening process that does not involve a respiratory burst.
abscission (GO:0009838)
Namespace: biological_process
Definition: The controlled shedding of a body part.
chloroplastic endopeptidase Clp complex (GO:0009840)
Namespace: cellular_component
Definition: A Clp endopeptidase complex located in the chloroplast.
mitochondrial endopeptidase Clp complex (GO:0009841)
Namespace: cellular_component
Definition: A Clp endopeptidase complex located in the mitochondrion.
cyanelle (GO:0009842)
Namespace: cellular_component
Definition: A plastid that contains unstacked, phycobilisome-bearing thylakoid membranes and is surrounded by a double membrane with a peptidoglycan layer in the intermembrane space between the two envelope membranes. Cyanelles are characteristic of algae in the class Glaucophyta, and may represent an ancestral form of plastid.
Synonyms: cyanoplast; muroplast
cyanelle thylakoid (GO:0009843)
Namespace: cellular_component
Definition: A thylakoid found in a cyanelle, which is a type of plastid found in certain algae. The cyanelle contains a photosynthetic membrane resembling that of cyanobacteria.
obsolete germination (GO:0009844)
Namespace: biological_process
Definition: OBSOLETE. The physiological and developmental changes by a seed, spore, pollen grain (microspore), or zygote that occur after release from dormancy, and encompassing events prior to and including the first visible indications of growth.
Synonyms: germination
Comment: This term was made obsolete because it is a grouping term without biological significance.
seed germination (GO:0009845)
Namespace: biological_process
Definition: The physiological and developmental changes that occur in a seed commencing with water uptake (imbibition) and terminating with the elongation of the embryonic axis.
pollen germination (GO:0009846)
Namespace: biological_process
Definition: The physiological and developmental changes that occur in a heterosporous plant pollen grain, beginning with hydration and terminating with the emergence of the pollen tube through the aperture.
spore germination (GO:0009847)
Namespace: biological_process
Definition: The physiological and developmental changes that occur in a spore following release from dormancy up to the earliest signs of growth (e.g. emergence from a spore wall).
Synonyms: spore germination on or near host
indoleacetic acid biosynthetic process via tryptophan (GO:0009848)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of indole-3-acetic acid that occurs through metabolism of L-tryptophan.
Synonyms: IAA biosynthetic process via tryptophan; indoleacetic acid anabolism via tryptophan; indoleacetic acid formation via tryptophan; indoleacetic acid synthesis via tryptophan
auxin metabolic process (GO:0009850)
Namespace: biological_process
Definition: The chemical reactions and pathways involving auxins, a group of plant hormones that regulate aspects of plant growth.
Synonyms: auxin metabolism
auxin biosynthetic process (GO:0009851)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of auxins, plant hormones that regulate aspects of plant growth.
Synonyms: auxin anabolism; auxin biosynthesis; auxin formation; auxin synthesis
auxin catabolic process (GO:0009852)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of auxins, a group of plant hormones that regulate aspects of plant growth.
Synonyms: auxin breakdown; auxin catabolism; auxin degradation
photorespiration (GO:0009853)
Namespace: biological_process
Definition: A light-dependent catabolic process occurring concomitantly with photosynthesis in plants (especially C3 plants) whereby dioxygen (O2) is consumed and carbon dioxide (CO2) is evolved. The substrate is glycolate formed in large quantities in chloroplasts from 2-phosphoglycolate generated from ribulose 1,5-bisphosphate by the action of ribulose-bisphosphate carboxylase; the glycolate enters the peroxisomes where it is converted by glycolate oxidase to glyoxylate which undergoes transamination to glycine. This then passes into the mitochondria where it is decarboxylated forming one molecule of serine for every two molecules of glycine. This pathway also exists in photosynthetic bacteria.
Synonyms: photorespiratory pathway
oxidative photosynthetic carbon pathway (GO:0009854)
Namespace: biological_process
Definition: The reactions of the C2 pathway bring about the metabolic conversion of two molecules of 2-phosphoglycolate to one molecule of 3-phosphoglycerate, which can be used by the C3 cycle, and one molecule of carbon dioxide (CO2).
determination of bilateral symmetry (GO:0009855)
Namespace: biological_process
Definition: The establishment of an organism's body plan or part of an organism with respect to a single longitudinal plane. The pattern can either be symmetric, such that the halves are mirror images, or asymmetric where the pattern deviates from this symmetry.
Synonyms: determination of bilateral asymmetry
pollination (GO:0009856)
Namespace: biological_process
Definition: The cascade of biological processes occurring in plants beginning when the pollen lands on the female reproductive organs of a plant and continuing up to, but not including, fertilization, as defined by sperm-egg cell fusion.
obsolete compatible pollen-pistil interaction (GO:0009858)
Namespace: biological_process
Definition: OBSOLETE. An interaction between a pollen grain and pistil that results in unimpeded growth of the pollen tube through the stigma and style.
Synonyms: compatible pollen-pistil interaction
Comment: This term was made obsolete because it represents a phenotype.
pollen hydration (GO:0009859)
Namespace: biological_process
Definition: The process in which water is taken up by pollen.
pollen tube growth (GO:0009860)
Namespace: biological_process
Definition: Growth of pollen via tip extension of the intine wall.
jasmonic acid and ethylene-dependent systemic resistance (GO:0009861)
Namespace: biological_process
Definition: The jasmonic acid and ethylene (ethene) dependent process that confers broad spectrum systemic resistance to disease in response to wounding or a pathogen.
Synonyms: jasmonic acid and ethene-dependent systemic resistance; jasmonic acid/ethylene-dependent systemic resistance
systemic acquired resistance, salicylic acid mediated signaling pathway (GO:0009862)
Namespace: biological_process
Definition: The series of molecular signals mediated by salicylic acid involved in systemic acquired resistance.
Synonyms: salicylic acid mediated signaling pathway (systemic acquired resistance); systemic acquired resistance, salicylic acid mediated signalling pathway
salicylic acid mediated signaling pathway (GO:0009863)
Namespace: biological_process
Definition: The series of molecular signals mediated by salicylic acid.
Synonyms: salicylic acid mediated signal transduction; salicylic acid mediated signalling pathway; salicylic acid-mediated signaling pathway
induced systemic resistance, jasmonic acid mediated signaling pathway (GO:0009864)
Namespace: biological_process
Definition: The series of molecular signals mediated by jasmonic acid involved in induced systemic resistance.
Synonyms: induced systemic resistance, jasmonic acid mediated signalling pathway; jasmonic acid mediated signaling pathway (induced systemic resistance)
induced systemic resistance, ethylene mediated signaling pathway (GO:0009866)
Namespace: biological_process
Definition: The series of molecular signals mediated by ethylene (ethene) involved in induced systemic resistance.
Synonyms: ethene mediated signaling pathway (induced systemic resistance); ethylene mediated signaling pathway (induced systemic resistance); induced systemic resistance, ethene mediated signaling pathway; induced systemic resistance, ethene mediated signalling pathway; induced systemic resistance, ethylene mediated signalling pathway
jasmonic acid mediated signaling pathway (GO:0009867)
Namespace: biological_process
Definition: The series of molecular signals mediated by jasmonic acid.
Synonyms: JA signaling; jasmonate signaling; jasmonic acid mediated signalling pathway
jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway (GO:0009868)
Namespace: biological_process
Definition: The series of molecular signals mediated by jasmonic acid involved in jasmonic acid/ethylene (ethene) dependent systemic resistance.
Synonyms: jasmonic acid and ethene-dependent systemic resistance, jasmonic acid mediated signaling pathway; jasmonic acid mediated signaling pathway (jasmonic acid/ethene-dependent systemic resistance); jasmonic acid mediated signaling pathway (jasmonic acid/ethylene-dependent systemic resistance); jasmonic acid/ethene-dependent systemic resistance, jasmonic acid mediated signaling pathway; jasmonic acid/ethene-dependent systemic resistance, jasmonic acid mediated signalling pathway; jasmonic acid/ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway; jasmonic acid/ethylene-dependent systemic resistance, jasmonic acid mediated signalling pathway
obsolete incompatible pollen-pistil interaction (GO:0009869)
Namespace: biological_process
Definition: OBSOLETE. An interaction between a pollen grain and pistil that results in inhibition of pollen germination/growth.
Synonyms: incompatible pollen-pistil interaction
Comment: This term was made obsolete because it represents a phenotype.