LiteFold/GO huggingface dataset:
obsolete multi-organism behavior (GO:0051705)
Namespace: biological_process
Definition: OBSOLETE. Any process in which an organism has a behavioral effect on another organism of the same or different species.
Synonyms: behavioral interaction between organisms; behavioral interaction with other organism; behavioral signaling; behavioral signalling; behavioural interaction between organisms; behavioural interaction with other organism
Comment: This term was obsoleted because it was an unnecessary grouping term.
regulation of killing of cells of another organism (GO:0051709)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the killing by an organism of cells in another organism.
Synonyms: modulation by organism of apoptotic process in other organism involved in symbiotic interaction; modulation of programmed cell death in other organism; modulation of programmed cell death in other organism involved in symbiotic interaction; regulation of killing of cells of other organism
obsolete regulation of cytolysis in another organism (GO:0051710)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of the cytolysis by an organism of cells in another organism.
Synonyms: regulation of cytolysis in other organism; regulation of cytolysis of cells of another organism
Comment: This term was obsoleted because it has been used inconsistently.
negative regulation of killing of cells of another organism (GO:0051711)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of the killing by an organism of cells in another organism.
Synonyms: down regulation of killing of cells of another organism; down-regulation of killing of cells of another organism; downregulation of killing of cells of another organism; inhibition of killing of cells of another organism; negative regulation of killing of cells of other organism
positive regulation of killing of cells of another organism (GO:0051712)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of the killing by an organism of cells in another organism.
Synonyms: activation by organism of apoptotic programmed cell death in other organism during symbiotic interaction; activation of killing of cells of another organism; enhancement of other organism programmed cell death by organism; positive regulation of killing of cells of other organism; stimulation of killing of cells of another organism; up regulation of killing of cells of another organism; up-regulation of killing of cells of another organism; upregulation of killing of cells of another organism
obsolete negative regulation of cytolysis in another organism (GO:0051713)
Namespace: biological_process
Definition: OBSOLETE. Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of the cytolysis of cells in another organism.
Synonyms: down regulation of cytolysis of cells of another organism; down-regulation of cytolysis of cells of another organism; downregulation of cytolysis of cells of another organism; inhibition of cytolysis of cells of another organism; negative regulation of cytolysis in other organism; negative regulation of cytolysis of cells of another organism
Comment: This term was obsoleted because it has been used inconsistently.
obsolete positive regulation of cytolysis in another organism (GO:0051714)
Namespace: biological_process
Definition: OBSOLETE. Any process that activates or increases the frequency, rate or extent of the cytolysis by an organism of cells in another organism.
Synonyms: activation of cytolysis of cells of another organism; positive regulation of cytolysis in other organism; positive regulation of cytolysis of cells of another organism; stimulation of cytolysis of cells of another organism; up regulation of cytolysis of cells of another organism; up-regulation of cytolysis of cells of another organism; upregulation of cytolysis of cells of another organism
Comment: This term was obsoleted because it has been used inconsistently.
cytolysis in another organism (GO:0051715)
Namespace: biological_process
Definition: The killing by an organism of a cell in another organism by means of the rupture of cell membranes and the loss of cytoplasm.
Synonyms: cytolysis in other organism; cytolysis of cells of another organism; envenomation resulting in cytolysis in another organism; envenomation resulting in cytolysis in other organism
cellular response to stimulus (GO:0051716)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus by a cell and ends with a change in state or activity or the cell.
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
inositol-1,3,4,5-tetrakisphosphate 3-phosphatase activity (GO:0051717)
Namespace: molecular_function
Definition: Catalysis of the reaction: 1D-myo-inositol 1,3,4,5-tetrakisphosphate + H2O = 1D-myo-inositol 1,4,5-trisphosphate + phosphate.
Synonyms: inositol (1,3,4,5)-tetrakisphosphate 3-phosphatase activity; inositol 1,3,4,5-tetrakisphosphate 3-phosphomonoesterase activity; inositol 1,3,4,5-tetrakisphosphate-5-phosphomonoesterase activity
DNA (cytosine-5-)-methyltransferase activity, acting on CpG substrates (GO:0051718)
Namespace: molecular_function
Definition: Catalysis of the reaction: S-adenosyl-L-methionine + CpG (in DNA) = S-adenosyl-L-homocysteine + 5-MeCpG (in DNA).
Synonyms: HpaII methylase; HpaII' methylase; M.BsuRIa; M.BsuRIb
DNA (cytosine-5-)-methyltransferase activity, acting on CpN substrates (GO:0051719)
Namespace: molecular_function
Definition: Catalysis of the reaction: S-adenosyl-L-methionine + DNA containing CpN = S-adenosyl-L-homocysteine + DNA containing 5-MeCpN.
DNA (cytosine-5-)-methyltransferase activity, acting on CpNpG substrates (GO:0051720)
Namespace: molecular_function
Definition: Catalysis of the reaction: S-adenosyl-L-methionine + DNA containing CpNpG = S-adenosyl-L-homocysteine + DNA containing 5-MeCpNpG.
protein phosphatase 2A binding (GO:0051721)
Namespace: molecular_function
Definition: Binding to protein phosphatase 2A.
Synonyms: protein phosphatase 2 binding
obsolete protein C-terminal methylesterase activity (GO:0051722)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: C-terminal protein amino acid methyl ester + H2O = protein amino acid + methanol.
Synonyms: protein phosphatase methylesterase activity
Comment: This seems to be outside the scope of GO: it represent a specific protein and a 'domain.
protein methylesterase activity (GO:0051723)
Namespace: molecular_function
Definition: Catalysis of the reaction: protein amino acid methyl ester + H2O = protein amino acid + methanol.
Synonyms: PME activity; protein carboxyl methylesterase activity; protein carboxylic ester hydrolase activity; protein methyl-esterase activity
NAD transmembrane transporter activity (GO:0051724)
Namespace: molecular_function
Definition: Enables the transfer of NAD from one side of a membrane to the other.
Synonyms: NAD (oxidized) transporter activity; NAD (reduced) transporter activity; NAD transporter activity; NAD+ transporter activity; NADH transporter activity; nicotinamide adenine dinucleotide transmembrane transporter activity; oxidized NAD transporter activity; oxidized nicotinamide adenine dinucleotide transmembrane transporter activity; reduced NAD transporter activity; reduced nicotinamide adenine dinucleotide transmembrane transporter activity
Comment: NAD carrier
protein de-ADP-ribosylation (GO:0051725)
Namespace: biological_process
Definition: The process of removing one or more ADP-ribose residues from a protein.
Synonyms: poly(ADP-ribose) removal from protein; protein amino acid de-ADP-ribosylation; protein poly(ADP-ribose) catabolic process; protein poly(ADP-ribose) catabolism; protein poly(ADP-ribose) degradation; protein poly(ADP-ribose) hydrolysis; removal of ADP-ribose from protein
regulation of cell cycle (GO:0051726)
Namespace: biological_process
Definition: Any process that modulates the rate or extent of progression through the cell cycle.
Synonyms: arrest of mitotic cell cycle progression; cell cycle arrest; cell cycle modulation; cell cycle regulation; cell cycle regulator; control of cell cycle progression; mitotic cell cycle arrest; modulation of cell cycle progression; negative regulation of cell cycle arrest; positive regulation of cell cycle arrest; regulation of cell cycle arrest; regulation of cell cycle progression; regulation of progression through cell cycle; tumor suppressor
obsolete cell cycle switching, meiotic to mitotic cell cycle (GO:0051727)
Namespace: biological_process
Definition: OBSOLETE. The process in which a cell switches cell cycle mode from meiotic to mitotic division.
Synonyms: cell cycle switching, meiosis to mitosis; cell cycle switching, meiotic to mitotic cell cycle; conversion to mitosis; conversion to mitotic cell cycle; entry into mitosis; entry into mitotic cell cycle; initiation of mitosis; initiation of mitotic cell cycle; mitotic entry
Comment: This term was made obsolete because it does not refer to a real biological process.
cell cycle switching, mitotic to meiotic cell cycle (GO:0051728)
Namespace: biological_process
Definition: The process in which a cell switches cell cycle mode from mitotic to meiotic division.
Synonyms: cell cycle switching, mitosis to meiosis; conversion to meiosis; conversion to meiotic cell cycle; entry into meiosis; entry into meiotic cell cycle; initiation of meiosis; initiation of meiotic cell cycle; meiotic entry
germline cell cycle switching, mitotic to meiotic cell cycle (GO:0051729)
Namespace: biological_process
Definition: The process in which a germline cell switches cell cycle mode from mitotic to meiotic division.
Synonyms: germline cell cycle switching, mitosis to meiosis; germline conversion to meiosis; germline conversion to meiotic cell cycle; germline entry into meiosis; germline entry into meiotic cell cycle; germline initiation of meiosis; germline initiation of meiotic cell cycle; germline meiotic entry
obsolete polyribonucleotide kinase activity (GO:0051732)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: NTP + 5'-dephospho-RNA = NDP + 5'-phospho-RNA.
Synonyms: 5'-hydroxyl polyribonucleotide kinase activity; 5'-hydroxyl RNA kinase activity; RNA 5'-hydroxyl kinase activity; RNA kinase activity
Comment: This term was obsoleted because it represents an unnecessary grouping class.
obsolete polydeoxyribonucleotide kinase activity (GO:0051733)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: NTP + 5'-dephospho-DNA = NDP + 5'-phospho-DNA.
Synonyms: DNA 5'-hydroxyl kinase activity; DNA kinase activity
Comment: This term was obsoleted because it represents an unnecessary grouping class.
ATP-dependent polynucleotide 5'-hydroxyl-kinase activity (GO:0051734)
Namespace: molecular_function
Definition: Catalysis of the reaction: ATP + 5'-dephosphopolynucleotide = ADP + 5'-phosphopolynucleotide. The polynucleotide may be DNA or RNA.
Synonyms: ATP-dependent polynucleotide kinase activity; polynucleotide kinase activity
GTP-dependent polynucleotide 5'-hydroxyl-kinase activity (GO:0051735)
Namespace: molecular_function
Definition: Catalysis of the reaction: GTP + 5'-dephosphopolynucleotide = GDP + 5'-phosphopolynucleotide. The polynucleotide may be DNA or RNA.
Synonyms: GTP-dependent polynucleotide kinase activity
GTP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity (GO:0051737)
Namespace: molecular_function
Definition: Catalysis of the reaction: GTP + 5'-dephospho-DNA = GDP + 5'-phospho-DNA.
Synonyms: GTP-dependent DNA 5'-hydroxyl-kinase activity; GTP-dependent DNA kinase activity; GTP-dependent polydeoxyribonucleotide kinase activity
xanthophyll binding (GO:0051738)
Namespace: molecular_function
Definition: Binding to xanthophylls, any of several neutral yellow to orange carotenoid pigments containing oxygen.
ethylene binding (GO:0051740)
Namespace: molecular_function
Definition: Binding to ethylene (C2-H4, ethene), a simple hydrocarbon gas that can function in plants as a growth regulator.
Synonyms: ethene binding
2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity (GO:0051741)
Namespace: molecular_function
Definition: Catalysis of the reaction: 2-methyl-6-phytyl-1,4-benzoquinone + S-adenosyl-methionine = 2,3-dimethyl-6-phytyl-1,4-benzoquinone + S-adenosyl-homocysteine.
Synonyms: MPBQ methyltransferase activity
2-methyl-6-solanyl-1,4-benzoquinone methyltransferase activity (GO:0051742)
Namespace: molecular_function
Definition: Catalysis of the reaction: 2-methyl-6-solanyl-1,4-benzoquinone + S-adenosyl-methionine = 2,3-dimethyl-6-solanyl-1,4-benzoquinone + S-adenosyl-homocysteine.
Synonyms: MSBQ methyltransferase activity
red chlorophyll catabolite reductase activity (GO:0051743)
Namespace: molecular_function
Definition: Catalysis of the reaction: primary fluorescent chlorophyll catabolite + 2 oxidized [2Fe-2S]-[ferredoxin] = red chlorophyll catabolite + 2 reduced [2Fe-2S]-[ferredoxin] + 3 H+. This reaction is the reduction of the C20/C1 double bond in the pyrrole system of red chlorophyll catabolite (RCC) to a colorless tetrapyrrole (pFCC) with a strong blue fluorescence.
Synonyms: RCC reductase activity
obsolete 3,8-divinyl protochlorophyllide a 8-vinyl-reductase (NADPH) activity (GO:0051744)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: protochlorophyllide a + NADP+ = 3,8-divinyl protochlorophyllide a + NADPH + H+.
Comment: The reason for obsoletion is that this term is equivalent to divinyl chlorophyllide a 8-vinyl-reductase activity.\n.
4-hydroxy-3-methylbut-2-enyl diphosphate reductase activity (GO:0051745)
Namespace: molecular_function
Definition: Catalyzes the conversion of (2E)-4-hydroxy-3-methylbut-2-enyl diphosphate + 2 H+ + 2 reduced [2Fe-2S]-[ferredoxin] to isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) releasing H2O + 2 oxidized [2Fe-2S]-[ferredoxin]. Note that (E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate is an alternative name for 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate.
Synonyms: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity; isopentenyl-diphosphate:NAD(P)+ oxidoreductase activity
thalianol synthase activity (GO:0051746)
Namespace: molecular_function
Definition: Catalysis of the cyclization of 3(S)-oxidosqualene to (3S,13S,14R)-malabarica-8,17,21-trien-3-ol (thalianol).
cytosine C-5 DNA demethylase activity (GO:0051747)
Namespace: molecular_function
Definition: Catalysis of the reaction: methyl-dCpdG DNA + H2O = dCpdG DNA + methanol. This reaction is the hydrolytic removal of the methyl group on the 5 position of cytosine in DNA.
Synonyms: DNA demethylase activity; DNA methyltransferase activity acting on cytosine C-5; hydrolytic DNA demethylase activity
UTP-monosaccharide-1-phosphate uridylyltransferase activity (GO:0051748)
Namespace: molecular_function
Definition: Catalysis of the reaction: UTP + a monosaccharide 1-phosphate = diphosphate + UDP-monosaccharide.
Synonyms: PsUSP; UDP-monosaccharide diphosphorylase activity; UDP-monosaccharide pyrophosphorylase activity; UDP-sugar pyrophosphorylase activity; USP
indole acetic acid carboxyl methyltransferase activity (GO:0051749)
Namespace: molecular_function
Definition: Catalysis of the reaction: indole acetic acid + S-adenosyl-methionine = methyl indole acetic acid ester + S-adenosyl-homocysteine.
Synonyms: IAA carboxyl methyltransferase activity
delta(3,5)-delta(2,4)-dienoyl-CoA isomerase activity (GO:0051750)
Namespace: molecular_function
Definition: Catalysis of the reaction: a (3E,5Z)-dienoyl-CoA = a (2E,4E)-(5,6-saturated)-dienoyl-CoA.
Synonyms: delta(3,5),delta(2,4)-dienoyl-coenzyme A isomerase activity; delta3,5-delta2,4-dienoyl-CoA isomerase activity; delta5-delta2,4-dienoyl-CoA isomerase activity
alpha-1,4-mannosyltransferase activity (GO:0051751)
Namespace: molecular_function
Definition: Catalysis of the transfer of a mannose residue to an oligosaccharide, forming an alpha-(1->4) linkage.
mannan synthase activity (GO:0051753)
Namespace: molecular_function
Definition: Catalysis of the reaction: mannan(n) + GDP-mannose = mannan(n+1) + GDP. This reaction is the formation of the beta-(1->4)-linked mannan backbone in substrates such as galactomannan.
Synonyms: galactomannan beta-1,4-mannosyltransferase activity; mannan beta-1,4-mannosyltransferase activity
meiotic sister chromatid cohesion, centromeric (GO:0051754)
Namespace: biological_process
Definition: The cell cycle process in which centromeres of sister chromatids are joined during meiosis.
Synonyms: centromeric meiotic sister chromatin cohesion; meiotic sister chromatid cohesion at centromere; sister chromatid cohesion at centromere at meiosis I
meiotic sister chromatid arm separation (GO:0051755)
Namespace: biological_process
Definition: The cell cycle process in which sister chromatid arms are physically detached from each other during meiosis.
meiotic sister chromatid centromere separation (GO:0051756)
Namespace: biological_process
Definition: The cell cycle process in which the centromeres of sister chromatids are physically detached from each other during meiosis.
meiotic sister chromatid separation (GO:0051757)
Namespace: biological_process
Definition: The process in which sister chromatids are physically detached from each other during meiosis.
Synonyms: meiotic sister chromatid resolution
homologous chromosome movement towards spindle pole in meiosis I anaphase (GO:0051758)
Namespace: biological_process
Definition: The directed movement of homologous chromosomes from the center of the spindle towards the spindle poles, mediated by the shortening of microtubules attached to the chromosomes, during meiosis I anaphase.
Synonyms: homologous chromosome movement towards spindle pole during meiosis I; meiosis I, homologous chromosome movement towards spindle pole
sister chromosome movement towards spindle pole involved in meiotic sister chromatid segregation (GO:0051759)
Namespace: biological_process
Definition: The directed movement of sister chromosomes from the center of the spindle towards the spindle poles, mediated by the shortening of microtubules attached to the chromosomes, during meiosis II.
Synonyms: meiosis II, sister chromosome movement towards spindle pole; sister chromosome movement towards spindle pole during meiosis II
obsolete meiotic sister chromatid cohesion, arms (GO:0051760)
Namespace: biological_process
Definition: OBSOLETE. The cell cycle process in which the sister chromatids of a replicated chromosome are joined along the length of the chromosome arms during meiosis.
Synonyms: meiotic sister chromatid cohesion along arms; sister chromatid cohesion along arms at meiosis I
Comment: The reason for obsoletion is that this term was added in error.
sesquiterpene metabolic process (GO:0051761)
Namespace: biological_process
Definition: The chemical reactions and pathways involving sesquiterpenes, any of a class of terpenes of the formula C15H24 or a derivative of such a terpene.
Synonyms: sesquiterpene metabolism
sesquiterpene biosynthetic process (GO:0051762)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of sesquiterpenes, any of a class of terpenes of the formula C15H24 or a derivative of such a terpene.
sesquiterpene catabolic process (GO:0051763)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of sesquiterpenes, any of a class of terpenes of the formula C15H24 or a derivative of such a terpene.
actin crosslink formation (GO:0051764)
Namespace: biological_process
Definition: The process in which two or more actin filaments are connected together by proteins that act as crosslinks between the filaments. The crosslinked filaments may be on the same or differing axes.
Synonyms: actin bundling; actin crosslinking; bridging actin filaments; formation of actin crosslink
Comment: See also the molecular function term 'protein binding, bridging ; GO:0030674'.
inositol tetrakisphosphate kinase activity (GO:0051765)
Namespace: molecular_function
Definition: Catalysis of the reaction: inositol tetrakisphosphate + ATP = inositol pentakisphosphate + ADP.
inositol trisphosphate kinase activity (GO:0051766)
Namespace: molecular_function
Definition: Catalysis of the reaction: inositol trisphosphate + ATP = inositol tetrakisphosphate + ADP + H+.
Synonyms: IP3K
obsolete nitric-oxide synthase biosynthetic process (GO:0051767)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of a nitric-oxide synthase, an enzyme which catalyzes the reaction L-arginine + n NADPH + n H+ + m O2 = citrulline + nitric oxide + n NADP+.
Synonyms: brain nitric-oxide synthase biosynthetic process; endothelial nitric-oxide synthase biosynthetic process; inducible nitric-oxide synthase biosynthetic process; nitric-oxide synthase (type 2) biosynthesis; nitric-oxide synthase (type 2) biosynthetic process; nitric-oxide synthase (type II) biosynthesis; nitric-oxide synthase (type II) biosynthetic process; nitric-oxide synthase 2 biosynthetic process; nitric-oxide synthase-1 biosynthetic process; nitric-oxide synthase-2 biosynthetic process; nitric-oxide synthase-3 biosynthetic process; NO synthase biosynthesis; NO synthase biosynthetic process; NOS biosynthesis; NOS biosynthetic process; NOS1 biosynthesis; NOS2 biosynthesis; NOS2 synthase biosynthesis; NOS2 synthase biosynthetic process; NOS3 biosynthesis
Comment: The reason for obsoletion is that this term refers to a gene product.
obsolete regulation of nitric-oxide synthase biosynthetic process (GO:0051769)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of a nitric-oxide synthase enzyme.
Synonyms: regulation of nitric-oxide synthase (type 2) biosynthesis; regulation of nitric-oxide synthase (type 2) biosynthetic process; regulation of nitric-oxide synthase (type II) biosynthesis; regulation of nitric-oxide synthase (type II) biosynthetic process; regulation of nitric-oxide synthase 2 biosynthetic process; regulation of NO synthase biosynthesis; regulation of NO synthase biosynthetic process; regulation of NOS biosynthesis; regulation of NOS biosynthetic process; regulation of NOS2 synthase biosynthesis; regulation of NOS2 synthase biosynthetic process
Comment: The reason for obsoletion is that this term refers to a gene product.