LiteFold/GO huggingface dataset:
obsolete creation of an inductive signal by a mesenchymal cell involved in lung induction (GO:0060511)
Namespace: biological_process
Definition: OBSOLETE. The process in which splanchnic mesenchymal cells send a signal over a short range to endodermal cells inducing them to form the primary lung bud.
Comment: The reason for obsoletion is that the term is not clearly defined and there is no annotations.
prostate gland morphogenesis (GO:0060512)
Namespace: biological_process
Definition: The process in which the anatomical structures of a prostate gland are generated and organized.
prostatic bud formation (GO:0060513)
Namespace: biological_process
Definition: The morphogenetic process in which a region of the fetal urogenital sinus epithelium is specified to become the prostate, resulting in prostate bud outgrowth.
Synonyms: primary prostate bud formation; prostate ductal budding; prostate gland formation
prostate induction (GO:0060514)
Namespace: biological_process
Definition: The close range interaction of the urogenital sinus mesenchyme and the urogenital sinus epithelium that causes the cells of the urogenital sinus epithelium to change their fates and specify the development of the prostate gland.
prostate field specification (GO:0060515)
Namespace: biological_process
Definition: The process that results in the delineation of a specific region of the urogenital sinus epithelium into the area in which the prostate gland will develop.
primary prostatic bud elongation (GO:0060516)
Namespace: biological_process
Definition: The increase in size of the prostatic bud as it forms.
Synonyms: prostate bud elongation; prostate bud elongation involved in prostate morphogenesis
epithelial cell proliferation involved in prostatic bud elongation (GO:0060517)
Namespace: biological_process
Definition: The multiplication of epithelial cells, contributing to the expansion of the primary prostatic bud.
obsolete cell migration involved in prostatic bud elongation (GO:0060518)
Namespace: biological_process
Definition: OBSOLETE. The orderly movement of epithelial cells from one site to another contributing to the elongation of the primary prostatic bud.
Comment: This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.
obsolete cell adhesion involved in prostatic bud elongation (GO:0060519)
Namespace: biological_process
Definition: OBSOLETE. The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules that contributes to the elongation of the primary prostatic bud.
Comment: This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.
obsolete mesenchymal-epithelial cell signaling involved in prostate induction (GO:0060521)
Namespace: biological_process
Definition: OBSOLETE. Signaling at short range from urogenital sinus mesenchymal cells to cells of the urogenital epithelium resulting in the epithelial cells adopting a prostatic fate.
Synonyms: mesenchymal-epithelial cell signalling involved in prostate induction
Comment: This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.
inductive mesenchymal to epithelial cell signaling (GO:0060522)
Namespace: biological_process
Definition: Signaling at short range from mesenchymal cells to cells of an epithelium that results in a developmental change in the epithelial cells.
Synonyms: inductive mesenchymal to epithelial cell signalling
prostate epithelial cord elongation (GO:0060523)
Namespace: biological_process
Definition: The developmental growth process in which solid chords of prostate epithelium increase in length.
dichotomous subdivision of prostate epithelial cord terminal unit (GO:0060524)
Namespace: biological_process
Definition: The process in which a prostate epithelial cord bifurcates at its end.
Synonyms: prostate epithelial cord bifurcation
prostate glandular acinus development (GO:0060525)
Namespace: biological_process
Definition: The progression of a glandular acinus of the prostate gland over time, from its initial formation to the mature structure. The glandular acini are the saclike structures of the gland.
prostate glandular acinus morphogenesis (GO:0060526)
Namespace: biological_process
Definition: The process in which the prostate glandular acini are generated and organized. The glandular acini are the saclike structures of the gland.
prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis (GO:0060527)
Namespace: biological_process
Definition: The branching morphogenesis process in which the prostate epithelial cords branch freely to create the structure of the prostate acini.
secretory columnal luminar epithelial cell differentiation involved in prostate glandular acinus development (GO:0060528)
Namespace: biological_process
Definition: The process in which a relatively unspecialized epithelial cell acquires specialized features of a secretory columnal luminar epithelial cell of the prostate.
squamous basal epithelial stem cell differentiation involved in prostate gland acinus development (GO:0060529)
Namespace: biological_process
Definition: The process in which a relatively unspecialized epithelial cell acquires specialized features of a squamous basal epithelial stem cell of the prostate.
obsolete smooth muscle cell differentiation involved in prostate glandular acinus development (GO:0060530)
Namespace: biological_process
Definition: OBSOLETE. The process in which a relatively unspecialized cell acquires specialized features of a smooth muscle cell of the prostate glandular acinus.
Comment: This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.
obsolete neuroendocrine cell differentiation involved in prostate gland acinus development (GO:0060531)
Namespace: biological_process
Definition: OBSOLETE. The process in which relatively unspecialized cells acquires specialized structural and functions of a neuroendocrine cell of the prostate gland acinus.
Comment: This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.
bronchus cartilage development (GO:0060532)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of lung cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate.
Synonyms: pulmonary cartilage development
bronchus cartilage morphogenesis (GO:0060533)
Namespace: biological_process
Definition: The process in which the bronchus cartilage is generated and organized. The bronchus cartilage is the connective tissue of the portion of the airway that connects to the lungs.
trachea cartilage development (GO:0060534)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the tracheal cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate.
trachea cartilage morphogenesis (GO:0060535)
Namespace: biological_process
Definition: The process in which the anatomical structures of cartilage in the trachea are generated and organized.
muscle tissue development (GO:0060537)
Namespace: biological_process
Definition: The progression of muscle tissue over time, from its initial formation to its mature state. Muscle tissue is a contractile tissue made up of actin and myosin fibers.
skeletal muscle organ development (GO:0060538)
Namespace: biological_process
Definition: The progression of a skeletal muscle organ over time from its initial formation to its mature state. A skeletal muscle organ includes the skeletal muscle tissue and its associated connective tissue.
diaphragm development (GO:0060539)
Namespace: biological_process
Definition: The progression of the diaphragm over time from its initial formation to the mature structure. The diaphragm is a skeletal muscle that is responsible for contraction and expansion of the lungs.
diaphragm morphogenesis (GO:0060540)
Namespace: biological_process
Definition: The process in which the anatomical structures of the diaphragm are generated and organized.
respiratory system development (GO:0060541)
Namespace: biological_process
Definition: The progression of the respiratory system over time from its formation to its mature structure. The respiratory system carries out respiratory gaseous exchange.
regulation of strand invasion (GO:0060542)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency or extent of strand invasion. Strand invasion is the process in which the nucleoprotein complex (composed of the broken single-strand DNA and the recombinase) searches and identifies a region of homology in intact duplex DNA. The broken single-strand DNA displaces the like strand and forms Watson-Crick base pairs with its complement, forming a duplex in which each strand is from one of the two recombining DNA molecules.
negative regulation of strand invasion (GO:0060543)
Namespace: biological_process
Definition: Any process that decreases the rate, frequency or extent of strand invasion. Strand invasion is the process in which the nucleoprotein complex (composed of the broken single-strand DNA and the recombinase) searches and identifies a region of homology in intact duplex DNA. The broken single-strand DNA displaces the like strand and forms Watson-Crick base pairs with its complement, forming a duplex in which each strand is from one of the two recombining DNA molecules.
Synonyms: negative regulation of D-loop biosynthesis; negative regulation of D-loop formation; negative regulation of Rad51-mediated strand invasion
negative regulation of necroptotic process (GO:0060546)
Namespace: biological_process
Definition: Any process that decreases the rate, frequency or extent of a necroptotic process, a necrotic cell death process that results from the activation of endogenous cellular processes, such as signaling involving death domain receptors or Toll-like receptors.
Synonyms: negative regulation of necroptosis
obsolete negative regulation of necrotic cell death (GO:0060547)
Namespace: biological_process
Definition: OBSOLETE. Any process that decreases the rate, frequency or extent of necrotic cell death. Necrotic cell death is a cell death process that is morphologically characterized by a gain in cell volume (oncosis), swelling of organelles, plasma membrane rupture and subsequent loss of intracellular contents.
Comment: This term was made obsolete because it represents a phenotype
obsolete negative regulation of cell death (GO:0060548)
Namespace: biological_process
Definition: OBSOLETE. Any process that decreases the rate or frequency of cell death. Cell death is the specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death.
Comment: The reason for obsoletion is that this term represent an assay and not a GO process.
obsolete regulation of fructose 1,6-bisphosphate 1-phosphatase activity (GO:0060549)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the rate, frequency or extent of fructose 1,6-bisphosphate 1-phosphatase activity. Fructose 1,6-bisphosphate 1-phosphatase activity is the catalysis of the reaction: D-fructose 1,6-bisphosphate + H2O = D-fructose 6-phosphate + phosphate.
Comment: This term was obsoleted because it represents a molecular function.
obsolete positive regulation of fructose 1,6-bisphosphate 1-phosphatase activity (GO:0060550)
Namespace: biological_process
Definition: OBSOLETE. Any process that increases the rate, frequency or extent of fructose 1,6-bisphosphate 1-phosphatase activity. Fructose 1,6-bisphosphate 1-phosphatase activity is the catalysis of the reaction: D-fructose 1,6-bisphosphate + H2O = D-fructose 6-phosphate + phosphate.
Comment: This term was obsoleted because it represents a molecular function.
obsolete regulation of fructose 1,6-bisphosphate metabolic process (GO:0060551)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the rate, frequency or extent of fructose 1,6-bisphosphate metabolism. Fructose 1,6-bisphosphate metabolism is the chemical reactions and pathways involving fructose 1,6-bisphosphate, also known as FBP. The D enantiomer is a metabolic intermediate in glycolysis and gluconeogenesis.
Comment: This term was obsoleted because it is an unnecessary grouping class.
positive regulation of fructose 1,6-bisphosphate metabolic process (GO:0060552)
Namespace: biological_process
Definition: Any process that increases the rate, frequency or extent of fructose 1,6-bisphosphate metabolism. Fructose 1,6-bisphosphate metabolism is the chemical reactions and pathways involving fructose 1,6-bisphosphate, also known as FBP. The D enantiomer is a metabolic intermediate in glycolysis and gluconeogenesis.
regulation of vitamin D biosynthetic process (GO:0060556)
Namespace: biological_process
Definition: Any process that modulates the rate frequency or extent of a vitamin D biosynthetic process. Vitamin D biosynthesis is the chemical reactions and pathways resulting in the formation of vitamin D, any of a group of related, fat-soluble compounds that are derived from delta-5,7 steroids and play a central role in calcium metabolism. Specific forms of vitamin D include calciferol (ergocalciferol; vitamin D2) and cholecalciferol (calciol; vitamin D3).
positive regulation of vitamin D biosynthetic process (GO:0060557)
Namespace: biological_process
Definition: Any process that increases the rate, frequency or extent of a vitamin D biosynthetic process. Vitamin D biosynthesis is the chemical reactions and pathways resulting in the formation of vitamin D, any of a group of related, fat-soluble compounds that are derived from delta-5,7 steroids and play a central role in calcium metabolism. Specific forms of vitamin D include calciferol (ergocalciferol; vitamin D2) and cholecalciferol (calciol; vitamin D3).
obsolete regulation of calcidiol 1-monooxygenase activity (GO:0060558)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the rate, frequency or extent of calcidiol 1-monooxygenase activity. Calcidiol 1-monooxygenase activity is catalysis of the reaction: calcidiol + NADPH + H+ + O2 = calcitriol + NADP+ + H2O.
Comment: This term was obsoleted because it represents a molecular function.
obsolete positive regulation of calcidiol 1-monooxygenase activity (GO:0060559)
Namespace: biological_process
Definition: OBSOLETE. Any process that increases the rate, frequency or extent of calcidiol 1-monooxygenase activity. Calcidiol 1-monooxygenase activity is the catalysis of the reaction: calcidiol + NADPH + H+ + O2 = calcitriol + NADP+ + H2O.
Comment: This term was obsoleted because it represents a molecular function.
developmental growth involved in morphogenesis (GO:0060560)
Namespace: biological_process
Definition: The increase in size or mass of an anatomical structure that contributes to the structure attaining its shape.
Synonyms: differential growth
apoptotic process involved in morphogenesis (GO:0060561)
Namespace: biological_process
Definition: Any apoptotic process that contributes to the shaping of an anatomical structure.
Synonyms: apoptosis involved in development; apoptosis involved in morphogenesis; morphogenetic apoptosis
epithelial tube morphogenesis (GO:0060562)
Namespace: biological_process
Definition: The process in which the anatomical structures of a tube are generated and organized from an epithelium. Epithelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues, with tube shape and organization varying from the single-celled excretory organ in Caenorhabditis elegans to the branching trees of the mammalian kidney and insect tracheal system.
neuroepithelial cell differentiation (GO:0060563)
Namespace: biological_process
Definition: The process in which epiblast cells acquire specialized features of neuroepithelial cells.
obsolete inhibition of APC-Cdc20 complex activity (GO:0060565)
Namespace: biological_process
Definition: OBSOLETE. Any process that prevents the activation of APC-Cdc20 complex activity regulating the mitotic cell cycle.
Synonyms: inhibition of APC activity during mitotic cell cycle; inhibition of APC-Cdc20 complex activity; inhibition of APC/C activity during mitotic cell cycle; inhibition of cyclosome activity during mitotic cell cycle; inhibition of mitotic anaphase-promoting complex activity
Comment: This term was made obsolete because it was not clearly defined and thus used incorrectly in annotation.
positive regulation of termination of DNA-templated transcription (GO:0060566)
Namespace: biological_process
Definition: Any process that increases the rate, frequency or extent of DNA-templated transcription termination, the process in which transcription is completed; the formation of phosphodiester bonds ceases, the RNA-DNA hybrid dissociates, and RNA polymerase releases the DNA.
Synonyms: positive regulation of DNA-dependent transcription, termination; positive regulation of DNA-templated transcription, termination; positive regulation of termination of DNA-dependent transcription; positive regulation of transcription termination, DNA-dependent
negative regulation of termination of DNA-templated transcription (GO:0060567)
Namespace: biological_process
Definition: Any process that decreases the rate, frequency or extent of DNA-dependent transcription termination, the process in which transcription is completed; the formation of phosphodiester bonds ceases, the RNA-DNA hybrid dissociates, and RNA polymerase releases the DNA.
Synonyms: negative regulation of DNA-dependent transcription, termination; negative regulation of DNA-templated transcription, termination; negative regulation of termination of DNA-dependent transcription; negative regulation of transcription termination, DNA-dependent
regulation of peptide hormone processing (GO:0060568)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency or extent of peptide hormone processing. Peptide hormone processing is the generation of a mature peptide hormone by posttranslational processing of a prohormone.
positive regulation of peptide hormone processing (GO:0060569)
Namespace: biological_process
Definition: Any process that increases the rate, frequency or extent of peptide hormone processing. Peptide hormone processing is the generation of a mature peptide hormone by posttranslational processing of a prohormone.
negative regulation of peptide hormone processing (GO:0060570)
Namespace: biological_process
Definition: Any process that decreases the rate, frequency or extent of peptide hormone processing. Peptide hormone processing is the generation of a mature peptide hormone by posttranslational processing of a prohormone.
morphogenesis of an epithelial fold (GO:0060571)
Namespace: biological_process
Definition: The morphogenetic process in which an epithelial sheet bends along a linear axis.
Synonyms: epithelial folding; folding of an epithelial sheet
morphogenesis of an epithelial bud (GO:0060572)
Namespace: biological_process
Definition: The morphogenetic process in which a bud forms from an epithelial sheet. A bud is a protrusion that forms form the sheet by localized folding.
cell fate specification involved in pattern specification (GO:0060573)
Namespace: biological_process
Definition: The process involved in the specification of the identity of a cell in a field of cells that is being instructed as to how to differentiate. Once specification has taken place, that cell will be committed to differentiate down a specific pathway if left in its normal environment.
intestinal epithelial cell maturation (GO:0060574)
Namespace: biological_process
Definition: The developmental process, independent of morphogenetic (shape) change, that is required for a columna/cuboidal epithelial cell of the intestine to attain its fully functional state. A columnar/cuboidal epithelial cell of the intestine mature as they migrate from the intestinal crypt to the villus.
intestinal epithelial cell differentiation (GO:0060575)
Namespace: biological_process
Definition: The process in which a relatively unspecialized cell acquires specialized features of a columnar/cuboidal epithelial cell of the intestine.
intestinal epithelial cell development (GO:0060576)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of a columnar/cuboidal epithelial cell of the intestine over time, from its formation to the mature structure.
pulmonary vein morphogenesis (GO:0060577)
Namespace: biological_process
Definition: The process in which the anatomical structure of the pulmonary venous blood vessels are generated and organized. Pulmonary veins are blood vessels that transport blood from the lungs to the heart.
Synonyms: pulmonary venous blood vessel morphogenesis
ventral spinal cord interneuron fate commitment (GO:0060579)
Namespace: biological_process
Definition: The process in which the developmental fate of a cell becomes restricted such that it will develop into a ventral spinal cord interneuron. Ventral spinal cord interneurons are cells located in the ventral portion of the spinal cord that transmit signals between sensory and motor neurons and are required for reflexive responses.
ventral spinal cord interneuron fate determination (GO:0060580)
Namespace: biological_process
Definition: The process in which a cell becomes capable of differentiating autonomously into a ventral spinal cord interneuron regardless of its environment; upon determination, the cell fate cannot be reversed. Ventral spinal cord interneurons are cells located in the ventral portion of the spinal cord that transmit signals between sensory and motor neurons and are required for reflexive responses.
cell fate commitment involved in pattern specification (GO:0060581)
Namespace: biological_process
Definition: The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells within a field of cells that will exhibit a certain pattern of differentiation. Positional information is established through protein signals that emanate from a localized source within a developmental field resulting in specification of a cell type. Those signals are then interpreted in a cell-autonomous manner resulting in the determination of the cell type.
cell fate determination involved in pattern specification (GO:0060582)
Namespace: biological_process
Definition: A process involved in commitment of a cell to a fate in a developmental field. Once determination has taken place, a cell becomes committed to differentiate down a particular pathway regardless of its environment.
regulation of actin cortical patch localization (GO:0060583)
Namespace: biological_process
Definition: Any process that modulates the localization of an actin cortical patch. An actin cortical patch is a discrete actin-containing structure found just beneath the plasma membrane in fungal cells.
Synonyms: regulation of actin cortical patch localisation
obsolete regulation of prostaglandin-endoperoxide synthase activity (GO:0060584)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the rate, frequency or prostaglandin-endoperoxide synthase activity. Prostaglandin-endoperoxide synthase activity is the catalysis of the reaction: arachidonate + donor-H2 + 2 O2 = prostaglandin H2 + acceptor + H2O.
Synonyms: regulation of (PG)H synthase activity; regulation of fatty acid cyclooxygenase activity; regulation of PG synthetase activity; regulation of prostaglandin synthetase activity
Comment: This term was obsoleted because it represents a molecular function.