LiteFold/GO huggingface dataset:
anaerobic 2,4,6-trinitrotoluene catabolic process (GO:0046258)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of 2,4,6-trinitrotoluene, 1-methyl-2,4,6-trinitrobenzene, a highly explosive pale yellow crystalline solid, in the absence of oxygen.
Synonyms: anaerobic 2,4,6-trinitrotoluene breakdown; anaerobic 2,4,6-trinitrotoluene catabolism; anaerobic 2,4,6-trinitrotoluene degradation
obsolete trinitrotoluene biosynthetic process (GO:0046259)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of trinitrotoluene, a methylated benzene molecule with three NO2 groups attached to it.
Synonyms: trinitrotoluene anabolism; trinitrotoluene biosynthesis; trinitrotoluene biosynthetic process; trinitrotoluene formation; trinitrotoluene synthesis
Comment: This term was made obsolete because trinitrotoluene is not synthesized by living organisms, and GO does not cover non-biological processes.
trinitrotoluene catabolic process (GO:0046260)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of trinitrotoluene, a methylated benzene entity with three NO2 groups attached to it. This includes the explosive TNT, 1-methyl-2,4,6-trinitrobenzene.
Synonyms: trinitrotoluene breakdown; trinitrotoluene catabolism; trinitrotoluene degradation
obsolete 4-nitrotoluene biosynthetic process (GO:0046261)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of 4-nitrotoluene, 1-methyl-4-nitrobenzene.
Synonyms: 4-nitrotoluene anabolism; 4-nitrotoluene biosynthesis; 4-nitrotoluene biosynthetic process; 4-nitrotoluene formation; 4-nitrotoluene synthesis; 4NT biosynthesis; 4NT biosynthetic process
Comment: This term was made obsolete because 4-nitrotoluene is not synthesized by living organisms, and GO does not cover non-biological processes.
obsolete nitrotoluene biosynthetic process (GO:0046262)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of nitrotoluene, any methylbenzene molecule with NO2 group(s) attached.
Synonyms: nitrotoluene anabolism; nitrotoluene biosynthesis; nitrotoluene biosynthetic process; nitrotoluene formation; nitrotoluene synthesis
Comment: This term was made obsolete because nitrotoluene is not synthesized by living organisms, and GO does not cover non-biological processes.
nitrotoluene catabolic process (GO:0046263)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of nitrotoluene, any methylbenzene molecule with NO2 group(s) attached.
Synonyms: nitrotoluene breakdown; nitrotoluene catabolism; nitrotoluene degradation
obsolete thiocyanate biosynthetic process (GO:0046264)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of thiocyanate, any anion or salt of thiocyanic acid.
Synonyms: thiocyanate anabolism; thiocyanate biosynthesis; thiocyanate biosynthetic process; thiocyanate formation; thiocyanate synthesis
Comment: This term was made obsolete because thiocyanates are not synthesized by living organisms, and GO does not cover non-biological processes.
thiocyanate catabolic process (GO:0046265)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of thiocyanate, any anion of thiocyanic acid.
Synonyms: thiocyanate breakdown; thiocyanate catabolism; thiocyanate degradation
obsolete triethanolamine biosynthetic process (GO:0046266)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of triethanolamine, a combustible, hygroscopic, colorless liquid commonly used in dry-cleaning solutions, cosmetics, detergents, textile processing, wool scouring, and as a corrosion inhibitor and pharmaceutical alkalizing agent.
Synonyms: triethanolamine anabolism; triethanolamine biosynthesis; triethanolamine biosynthetic process; triethanolamine formation; triethanolamine synthesis
Comment: This term was made obsolete because triethanolamine is not synthesized by living organisms, and GO does not cover non-biological processes.
obsolete triethanolamine catabolic process (GO:0046267)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the breakdown of triethanolamine, a combustible, hygroscopic, colorless liquid commonly used in dry-cleaning solutions, cosmetics, detergents, textile processing, wool scouring, and as a corrosion inhibitor and pharmaceutical alkalizing agent.
Synonyms: triethanolamine breakdown; triethanolamine catabolism; triethanolamine degradation
Comment: Triethanolamine is not a natural compound.
obsolete toluene-4-sulfonate biosynthetic process (GO:0046268)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of toluene-4-sulfonate, 4-methylbenzenesulfonate, the anion of sulfonic acid attached to a methylbenzene molecule.
Synonyms: 4-toluenesulfonate biosynthesis; 4-toluenesulfonate biosynthetic process; toluene-4-sulfonate anabolism; toluene-4-sulfonate biosynthesis; toluene-4-sulfonate biosynthetic process; toluene-4-sulfonate formation; toluene-4-sulfonate synthesis; toluene-4-sulphonate biosynthesis; toluene-4-sulphonate biosynthetic process
Comment: This term was made obsolete because toluene-4-sulfonate is not synthesized by living organisms, and GO does not cover non-biological processes.
toluene-4-sulfonate catabolic process (GO:0046269)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of toluene-4-sulfonate, 4-methylbenzenesulfonate, the anion of sulfonic acid attached to a methylbenzene molecule.
Synonyms: 4-toluenesulfonate catabolic process; 4-toluenesulfonate catabolism; toluene-4-sulfonate breakdown; toluene-4-sulfonate catabolism; toluene-4-sulfonate degradation; toluene-4-sulphonate catabolic process; toluene-4-sulphonate catabolism
obsolete 4-toluenecarboxylate biosynthetic process (GO:0046270)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of 4-toluenecarboxylate, 4-methylbenzenecarboxylate, the anion of carboxylic acid attached to a methylbenzene molecule.
Synonyms: 4-toluenecarboxylate anabolism; 4-toluenecarboxylate biosynthesis; 4-toluenecarboxylate biosynthetic process; 4-toluenecarboxylate formation; 4-toluenecarboxylate synthesis
Comment: This term was made obsolete because 4-toluenecarboxylate is not synthesized by living organisms and GO does not cover non-biological processes.
phenylpropanoid catabolic process (GO:0046271)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of aromatic derivatives of trans-cinnamic acid.
Synonyms: phenylpropanoid breakdown; phenylpropanoid catabolism; phenylpropanoid degradation
lignin catabolic process (GO:0046274)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of lignins, a class of polymers of phenylpropanoid units.
Synonyms: lignin breakdown; lignin catabolism; lignin degradation
flavonoid catabolic process (GO:0046275)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of flavonoids, a group of phenolic derivatives containing a flavan skeleton.
Synonyms: flavonoid breakdown; flavonoid catabolism; flavonoid degradation
methylgallate catabolic process (GO:0046276)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of methylgallate, trihydroxymethylbenzoate, the anion of methylgallic acid.
Synonyms: methylgallate breakdown; methylgallate catabolism; methylgallate degradation
methylgallate biosynthetic process (GO:0046277)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of methylgallate, trihydroxymethylbenzoate, the anion of methylgallic acid.
Synonyms: methylgallate anabolism; methylgallate biosynthesis; methylgallate formation; methylgallate synthesis
3,4-dihydroxybenzoate metabolic process (GO:0046278)
Namespace: biological_process
Definition: The chemical reactions and pathways involving protocatechuate, the anion of protocatechuic acid (3,4-dihydroxybenzoic acid).
Synonyms: protocatechuate metabolic process; protocatechuate metabolism
3,4-dihydroxybenzoate biosynthetic process (GO:0046279)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of 3,4-dihydroxybenzoate.
Synonyms: protocatechuate anabolism; protocatechuate biosynthesis; protocatechuate biosynthetic process; protocatechuate formation; protocatechuate synthesis
chalcone catabolic process (GO:0046280)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of chalcone, phenyl steryl ketone or its hydroxylated derivatives.
Synonyms: chalcone breakdown; chalcone catabolism; chalcone degradation
cinnamic acid catabolic process (GO:0046281)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of cinnamic acid, 3-phenyl-2-propenoic acid.
Synonyms: cinnamic acid breakdown; cinnamic acid catabolism; cinnamic acid degradation; cinnamylic acid catabolic process; cinnamylic acid catabolism; phenylacrylic acid catabolic process; phenylacrylic acid catabolism
cinnamic acid ester catabolic process (GO:0046282)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of ester derivatives of cinnamic acid, phenylpropenoic acid.
Synonyms: cinnamic acid ester breakdown; cinnamic acid ester catabolism; cinnamic acid ester degradation
anthocyanin-containing compound metabolic process (GO:0046283)
Namespace: biological_process
Definition: The chemical reactions and pathways involving anthocyanins, any member of a group of intensely colored soluble glycosides of anthocyanidins that occur in plants. They are responsible from most of the scarlet, purple, mauve and blue coloring in higher plants, especially of flowers.
Synonyms: anthocyanin metabolic process; anthocyanin metabolism
anthocyanin-containing compound catabolic process (GO:0046284)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of anthocyanins, any member of a group of intensely colored soluble glycosides of anthocyanidins.
Synonyms: anthocyanin breakdown; anthocyanin catabolic process; anthocyanin catabolism; anthocyanin degradation
obsolete flavonoid phytoalexin metabolic process (GO:0046285)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving flavonoid phytoalexins, a group of water-soluble phenolic derivatives containing a flavan skeleton, which possess antibiotic activity and are produced by plant tissues in response to infection.
Synonyms: flavonoid phytoalexin metabolism
Comment: This term was obsoleted because it is an unnecessary grouping term.
flavonoid phytoalexin catabolic process (GO:0046286)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of flavonoid phytoalexins, a group of water-soluble phenolic derivatives containing a flavan skeleton, which possess antibiotic activity and are produced by plant tissues in response to infection.
Synonyms: flavonoid phytoalexin breakdown; flavonoid phytoalexin catabolism; flavonoid phytoalexin degradation
isoflavonoid metabolic process (GO:0046287)
Namespace: biological_process
Definition: The chemical reactions and pathways involving isoflavonoids, a group of water-soluble phenolic derivatives, isomeric with flavonoids, containing a flavan skeleton. They are differentiated from flavonoids by the point of attachment of the aromatic ring group.
Synonyms: isoflavonoid metabolism
isoflavonoid catabolic process (GO:0046288)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of isoflavonoids, a group of water-soluble phenolic derivatives, isomeric with flavonoids.
Synonyms: isoflavonoid breakdown; isoflavonoid catabolism; isoflavonoid degradation
obsolete isoflavonoid phytoalexin metabolic process (GO:0046289)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving isoflavonoid phytoalexins, a group of water-soluble phenolic derivatives isomeric with flavonoids that possess antibiotic activity and are produced by plant tissues in response to infection.
Synonyms: isoflavonoid phytoalexin metabolism
Comment: This term was obsoleted because it is an unnecessary grouping term.
isoflavonoid phytoalexin catabolic process (GO:0046290)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of isoflavonoid phytoalexins, a group of water-soluble phenolic derivatives isomeric with flavonoids that possess antibiotic activity and are produced by plant tissues in response to infection.
Synonyms: isoflavonoid phytoalexin breakdown; isoflavonoid phytoalexin catabolism; isoflavonoid phytoalexin degradation
obsolete 6-hydroxycineole biosynthetic process (GO:0046291)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of 6-hydroxycineole (6-hydroxy-1,8-epoxy-p-menthane), a hydrocarbon with the formula C10H18O2.
Synonyms: 6-endo-hydroxycineole biosynthesis; 6-endo-hydroxycineole biosynthetic process; 6-hydroxycineole anabolism; 6-hydroxycineole biosynthesis; 6-hydroxycineole biosynthetic process; 6-hydroxycineole formation; 6-hydroxycineole synthesis; hydroxycineol biosynthesis; hydroxycineol biosynthetic process
Comment: This term was made obsolete because 6-hydroxycineole is not synthesized by living organisms and GO does not cover non-biological processes.
formaldehyde metabolic process (GO:0046292)
Namespace: biological_process
Definition: The chemical reactions and pathways involving formaldehyde (methanal, H2C=O), a colorless liquid or gas with a pungent odor, commonly used as a fixative or an antibacterial agent.
Synonyms: formaldehyde metabolism; methanal metabolic process; methanal metabolism
formaldehyde catabolic process (GO:0046294)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of formaldehyde (methanal, H2C=O), the simplest aldehyde.
Synonyms: formaldehyde breakdown; formaldehyde catabolism; formaldehyde degradation; methanal catabolic process; methanal catabolism
glycolate biosynthetic process (GO:0046295)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of glycolate, the anion of hydroxyethanoic acid (glycolic acid).
Synonyms: glycolate anabolism; glycolate biosynthesis; glycolate formation; glycolate synthesis
glycolate catabolic process (GO:0046296)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of glycolate, the anion of hydroxyethanoic acid (glycolic acid).
Synonyms: glycolate breakdown; glycolate catabolism; glycolate degradation
obsolete 2,4-dichlorobenzoate biosynthetic process (GO:0046297)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of 2,4-dichlorobenzoate, a chlorinated aromatic compound which is a key intermediate in the aerobic degradation of polychlorinated biphenyls (PCBs).
Synonyms: 2,4-dichlorobenzoate anabolism; 2,4-dichlorobenzoate biosynthesis; 2,4-dichlorobenzoate biosynthetic process; 2,4-dichlorobenzoate formation; 2,4-dichlorobenzoate synthesis
Comment: This term was made obsolete because 2,4-dichlorobenzoate is not synthesized by living organisms, and GO does not cover non-biological processes.
2,4-dichlorobenzoate catabolic process (GO:0046298)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of 2,4-dichlorobenzoate, a chlorinated aromatic compound which is a key intermediate in the aerobic degradation of polychlorinated biphenyls (PCBs).
Synonyms: 2,4-dichlorobenzoate breakdown; 2,4-dichlorobenzoate catabolism; 2,4-dichlorobenzoate degradation
obsolete 2-chloro-N-isopropylacetanilide biosynthetic process (GO:0046301)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of 2-chloro-N-isopropylacetanilide, an acylanide herbicide widely used to protect corn, onion, cabbage, rose bushes, and ornamental plants.
Synonyms: 2-chloro-N-isopropylacetanilide anabolism; 2-chloro-N-isopropylacetanilide biosynthesis; 2-chloro-N-isopropylacetanilide biosynthetic process; 2-chloro-N-isopropylacetanilide formation; 2-chloro-N-isopropylacetanilide synthesis
Comment: This term was made obsolete because 2-chloro-N-isopropylacetanilide is not synthesized by living organisms and GO does not cover non-biological processes.
2-chloro-N-isopropylacetanilide catabolic process (GO:0046302)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of 2-chloro-N-isopropylacetanilide, an acylanide herbicide widely used to protect corn, onion, cabbage, rose bushes, and ornamental plants.
Synonyms: 2-chloro-N-isopropylacetanilide breakdown; 2-chloro-N-isopropylacetanilide catabolism; 2-chloro-N-isopropylacetanilide degradation
obsolete 2-nitropropane biosynthetic process (GO:0046303)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of 2-nitropropane, a clear, colorless liquid with a mild, fruity odor.
Synonyms: 2-nitropropane anabolism; 2-nitropropane biosynthesis; 2-nitropropane biosynthetic process; 2-nitropropane formation; 2-nitropropane synthesis
Comment: This term was made obsolete because 2-nitropropane is not synthesized by living organisms, and GO does not cover non-biological processes.
2-nitropropane catabolic process (GO:0046304)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of 2-nitropropane, a clear, colorless liquid with a mild, fruity odor.
Synonyms: 2-nitropropane breakdown; 2-nitropropane catabolism; 2-nitropropane degradation
alkanesulfonate biosynthetic process (GO:0046305)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of alkanesulfonates, the anion of alkanesulfonic acids, sulfonic acid derivatives containing an aliphatic hydrocarbon group.
Synonyms: alkanesulfonate anabolism; alkanesulfonate biosynthesis; alkanesulfonate formation; alkanesulfonate synthesis; alkanesulphonate biosynthesis; alkanesulphonate biosynthetic process
alkanesulfonate catabolic process (GO:0046306)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of alkanesulfonates, the anion of alkanesulfonic acids, sulfonic acid derivatives containing an aliphatic hydrocarbon group.
Synonyms: alkanesulfonate breakdown; alkanesulfonate catabolism; alkanesulfonate degradation; alkanesulphonate catabolic process; alkanesulphonate catabolism
Z-phenylacetaldoxime biosynthetic process (GO:0046307)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of Z-phenylacetaldoxime, a member of the glucosinolate group of compounds.
Synonyms: Z-phenylacetaldoxime anabolism; Z-phenylacetaldoxime biosynthesis; Z-phenylacetaldoxime formation; Z-phenylacetaldoxime synthesis
Z-phenylacetaldoxime catabolic process (GO:0046308)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of Z-phenylacetaldoxime, a member of the glucosinolate group of compounds.
Synonyms: Z-phenylacetaldoxime breakdown; Z-phenylacetaldoxime catabolism; Z-phenylacetaldoxime degradation
obsolete 1,3-dichloro-2-propanol catabolic process (GO:0046310)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the breakdown of 1,3-dichloro-2-propanol (DCP), a halohydrin suspected of being carcinogenic, mutagenic and genotoxic.
Synonyms: 1,3-dichloro-2-propanol breakdown; 1,3-dichloro-2-propanol catabolism; 1,3-dichloro-2-propanol degradation
Comment: 1,3-dichloro-2-propanol is not a natural compound.
prenylcysteine biosynthetic process (GO:0046311)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of prenylcysteine, 3-methyl-2-buten-1-yl-cysteine, a derivative of the amino acid cysteine formed by the covalent addition of a prenyl residue.
Synonyms: prenylcysteine anabolism; prenylcysteine biosynthesis; prenylcysteine formation; prenylcysteine synthesis
obsolete phosphoarginine catabolic process (GO:0046313)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the breakdown of phosphoarginine, a phosphorylated derivative of the amino acid arginine.
Synonyms: phosphoarginine breakdown; phosphoarginine catabolism; phosphoarginine degradation
Comment: The reason for obsoletion is that this represents a molecular function.
phosphocreatine biosynthetic process (GO:0046314)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of phosphocreatine, a phosphagen of creatine which is synthesized and broken down by creatine phosphokinase.
Synonyms: phosphocreatine anabolism; phosphocreatine biosynthesis; phosphocreatine formation; phosphocreatine synthesis
phosphocreatine catabolic process (GO:0046315)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of phosphocreatine, a phosphagen of creatine which is synthesized and broken down by creatine phosphokinase.
Synonyms: phosphocreatine breakdown; phosphocreatine catabolism; phosphocreatine degradation
gluconokinase activity (GO:0046316)
Namespace: molecular_function
Definition: Catalysis of the reaction: D-gluconate + ATP = 6-phospho-D-gluconate + ADP + 2 H+.
Synonyms: ATP:D-gluconate 6-phosphotransferase activity; gluconate kinase activity; gluconokinase (phosphorylating)
regulation of glucosylceramide biosynthetic process (GO:0046317)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of glucosylceramide.
Synonyms: regulation of glucosylceramide anabolism; regulation of glucosylceramide biosynthesis; regulation of glucosylceramide formation; regulation of glucosylceramide synthesis
negative regulation of glucosylceramide biosynthetic process (GO:0046318)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of glucosylceramide.
Synonyms: down regulation of glucosylceramide biosynthetic process; down-regulation of glucosylceramide biosynthetic process; downregulation of glucosylceramide biosynthetic process; inhibition of glucosylceramide biosynthetic process; negative regulation of glucosylceramide anabolism; negative regulation of glucosylceramide biosynthesis; negative regulation of glucosylceramide formation; negative regulation of glucosylceramide synthesis
positive regulation of glucosylceramide biosynthetic process (GO:0046319)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of glucosylceramide.
Synonyms: activation of glucosylceramide biosynthetic process; positive regulation of glucosylceramide anabolism; positive regulation of glucosylceramide biosynthesis; positive regulation of glucosylceramide formation; positive regulation of glucosylceramide synthesis; stimulation of glucosylceramide biosynthetic process; up regulation of glucosylceramide biosynthetic process; up-regulation of glucosylceramide biosynthetic process; upregulation of glucosylceramide biosynthetic process