LiteFold/GO huggingface dataset:
regulation of fatty acid oxidation (GO:0046320)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of fatty acid oxidation.
positive regulation of fatty acid oxidation (GO:0046321)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of fatty acid oxidation.
Synonyms: activation of fatty acid oxidation; stimulation of fatty acid oxidation; up regulation of fatty acid oxidation; up-regulation of fatty acid oxidation; upregulation of fatty acid oxidation
negative regulation of fatty acid oxidation (GO:0046322)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of fatty acid oxidation.
Synonyms: down regulation of fatty acid oxidation; down-regulation of fatty acid oxidation; downregulation of fatty acid oxidation; inhibition of fatty acid oxidation
obsolete D-glucose import (GO:0046323)
Namespace: biological_process
Definition: OBSOLETE. The directed movement of the hexose monosaccharide D-glucose into a cell or organelle.
Synonyms: glucose import; glucose uptake
Comment: The reason for obsoletion is that this term is equivalent to D-glucose import across plasma membrane.
regulation of D-glucose import across plasma membrane (GO:0046324)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the import of the hexose monosaccharide glucose into a cell.
Synonyms: regulation of glucose import; regulation of glucose uptake
negative regulation of D-glucose import across plasma membrane (GO:0046325)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of the import of the hexose monosaccharide glucose into a cell.
Synonyms: down regulation of glucose import; down-regulation of glucose import; downregulation of glucose import; inhibition of glucose import; negative regulation of glucose import; negative regulation of glucose uptake
glycerol biosynthetic process from pyruvate (GO:0046327)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of glycerol, 1,2,3-propanetriol, from other compounds, including pyruvate.
Synonyms: glycerol anabolism from pyruvate; glycerol formation from pyruvate; glycerol synthesis from pyruvate; glyceroneogenesis
negative regulation of JNK cascade (GO:0046329)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction mediated by the JNK cascade.
Synonyms: down regulation of JNK cascade; down-regulation of JNK cascade; downregulation of JNK cascade; inhibition of JNK cascade
lateral inhibition (GO:0046331)
Namespace: biological_process
Definition: Signaling between cells of equivalent developmental potential that results in these cells adopting different developmental fates. An example is the suppression by cells with a particular fate of the adoption of the same fate by surrounding cells.
SMAD binding (GO:0046332)
Namespace: molecular_function
Definition: Binding to a SMAD signaling protein.
octopamine metabolic process (GO:0046333)
Namespace: biological_process
Definition: The chemical reactions and pathways involving octopamine, 1-(p-hydroxyphenyl)-2-aminoethanol. The D enantiomer is about one-tenth as active as norepinephrine and is found in the salivary glands of Octopus and Eledone species.
Synonyms: octopamine metabolism
octopamine catabolic process (GO:0046334)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of octopamine, 1-(p-hydroxyphenyl)-2-aminoethanol. The D enantiomer is about one-tenth as active as norepinephrine and is found in the salivary glands of Octopus and Eledone species.
Synonyms: octopamine breakdown; octopamine catabolism; octopamine degradation
ethanolamine biosynthetic process (GO:0046335)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of ethanolamine (2-aminoethanol), an important water-soluble base of phospholipid (phosphatidylethanolamine).
Synonyms: ethanolamine anabolism; ethanolamine biosynthesis; ethanolamine formation; ethanolamine synthesis
ethanolamine catabolic process (GO:0046336)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of ethanolamine (2-aminoethanol), an important water-soluble base of phospholipid (phosphatidylethanolamine).
Synonyms: ethanolamine breakdown; ethanolamine catabolism; ethanolamine degradation
phosphatidylethanolamine metabolic process (GO:0046337)
Namespace: biological_process
Definition: The chemical reactions and pathways involving phosphatidylethanolamine, any of a class of glycerophospholipids in which a phosphatidyl group is esterified to the hydroxyl group of ethanolamine. It is a major structural phospholipid in mammalian systems. It tends to be more abundant than phosphatidylcholine in the internal membranes of the cell and is an abundant component of prokaryotic membranes.
Synonyms: phosphatidylethanolamine metabolism
phosphatidylethanolamine catabolic process (GO:0046338)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of phosphatidylethanolamine, any of a class of glycerophospholipids in which a phosphatidyl group is esterified to the hydroxyl group of ethanolamine.
Synonyms: phosphatidylethanolamine breakdown; phosphatidylethanolamine catabolism; phosphatidylethanolamine degradation
diacylglycerol metabolic process (GO:0046339)
Namespace: biological_process
Definition: The chemical reactions and pathways involving diacylglycerol, a glyceride in which any two of the R groups (positions not specified) are acyl groups while the remaining R group can be either H or an alkyl group.
Synonyms: diacylglycerol metabolism; diglyceride metabolism
diacylglycerol catabolic process (GO:0046340)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of diacylglycerol, a glyceride in which any two of the R groups (positions not specified) are acyl groups while the remaining R group can be either H or an alkyl group.
Synonyms: diacylglycerol breakdown; diacylglycerol catabolism; diacylglycerol degradation; diglyceride catabolism
CDP-diacylglycerol metabolic process (GO:0046341)
Namespace: biological_process
Definition: The chemical reactions and pathways involving CDP-diacylglycerol, CDP-1,2-diacylglycerol, a substance composed of diacylglycerol in glycosidic linkage with cytidine diphosphate. It is a common intermediate in phospholipid biosynthesis.
Synonyms: CDP-diacylglycerol metabolism
CDP-diacylglycerol catabolic process (GO:0046342)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of CDP-diacylglycerol, CDP-1,2-diacylglycerol, a substance composed of diacylglycerol in glycosidic linkage with cytidine diphosphate.
Synonyms: CDP-diacylglycerol breakdown; CDP-diacylglycerol catabolism; CDP-diacylglycerol degradation
obsolete streptomycin metabolic process (GO:0046343)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving streptomycin, a commonly used antibiotic in cell culture media. It acts only on prokaryotes and blocks transition from initiation complex to chain elongating ribosome.
Synonyms: streptomycin metabolism
Comment: This term was obsoleted because it is an unnecessary grouping term.
ecdysteroid catabolic process (GO:0046344)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of ecdysteroids, a group of polyhydroxylated ketosteroids which initiate post-embryonic development.
Synonyms: ecdysteroid breakdown; ecdysteroid catabolism; ecdysteroid degradation
abscisic acid catabolic process (GO:0046345)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of abscisic acid, 5-(1-hydroxy-2,6,6,trimethyl-4-oxocyclohex-2-en-1-y1)-3-methylpenta-2,4-dienoic acid.
Synonyms: abscisic acid breakdown; abscisic acid catabolism; abscisic acid degradation
mannosamine catabolic process (GO:0046346)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of mannosomine, 2-amino-2-deoxymannose; the D-isomer is a constituent of neuraminic acids as well as mucolipids and mucoproteins.
Synonyms: mannosamine breakdown; mannosamine catabolism; mannosamine degradation
mannosamine biosynthetic process (GO:0046347)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of mannosomine, 2-amino-2-deoxymannose; the D-isomer is a constituent of neuraminic acids as well as mucolipids and mucoproteins.
Synonyms: mannosamine anabolism; mannosamine biosynthesis; mannosamine formation; mannosamine synthesis
amino sugar catabolic process (GO:0046348)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of any amino sugar, sugars containing an amino group in place of a hydroxyl group.
Synonyms: amino sugar breakdown; amino sugar catabolism; amino sugar degradation; aminosaccharide catabolic process; aminosaccharide catabolism
amino sugar biosynthetic process (GO:0046349)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of any amino sugar, sugars containing an amino group in place of a hydroxyl group.
Synonyms: amino sugar anabolism; amino sugar biosynthesis; amino sugar formation; amino sugar synthesis; aminosaccharide biosynthesis; aminosaccharide biosynthetic process
obsolete galactosaminoglycan metabolic process (GO:0046350)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving galactosaminoglycans, any one of a group of polysaccharides that contain amino sugars derived from the galactose.
Synonyms: galactosaminoglycan metabolism
Comment: This term was obsoleted because it was too broad.
disaccharide biosynthetic process (GO:0046351)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of disaccharides, sugars composed of two monosaccharide units.
Synonyms: disaccharide anabolism; disaccharide biosynthesis; disaccharide formation; disaccharide synthesis
disaccharide catabolic process (GO:0046352)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of disaccharides, sugars composed of two monosaccharide units.
Synonyms: disaccharide breakdown; disaccharide catabolism; disaccharide degradation
mannan biosynthetic process (GO:0046354)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of mannan, the main hemicellulose of soft (coniferous) wood, made up of D-mannose, D-glucose and D-galactose.
Synonyms: mannan anabolism; mannan biosynthesis; mannan formation; mannan synthesis
mannan catabolic process (GO:0046355)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of mannan, the main hemicellulose of soft (coniferous) wood, made up of D-mannose, D-glucose and D-galactose.
Synonyms: mannan breakdown; mannan catabolism; mannan degradation
acetyl-CoA catabolic process (GO:0046356)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of acetyl-CoA, a derivative of coenzyme A in which the sulfhydryl group is acetylated.
Synonyms: acetyl-CoA breakdown; acetyl-CoA catabolism; acetyl-CoA degradation
D-galactarate biosynthetic process (GO:0046357)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of galactarate, the anion of galactaric acid.
Synonyms: D-galactarate anabolism; D-galactarate biosynthesis; D-galactarate formation; D-galactarate synthesis; galactarate anabolism; galactarate biosynthesis; galactarate formation; galactarate synthesis
butyrate biosynthetic process (GO:0046358)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of butyrate, the anion of butyric acid.
Synonyms: butanoic acid anabolism; butanoic acid biosynthesis; butanoic acid biosynthetic process; butanoic acid formation; butanoic acid synthesis; butyrate anabolism; butyrate biosynthesis; butyrate formation; butyrate synthesis
butyrate catabolic process (GO:0046359)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of butyrate, the anion of butyric acid.
Synonyms: butanoic acid breakdown; butanoic acid catabolic process; butanoic acid catabolism; butanoic acid degradation; butyrate breakdown; butyrate catabolism; butyrate degradation
2-oxobutyrate biosynthetic process (GO:0046360)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of 2-oxobutyrate, the anion of the organic acid 2-oxobutyric acid, which contains a ketone group on carbon 2.
Synonyms: 2-oxobutyrate anabolism; 2-oxobutyrate biosynthesis; 2-oxobutyrate formation; 2-oxobutyrate synthesis; alpha-ketobutyrate biosynthesis; alpha-ketobutyrate biosynthetic process
obsolete 2-oxobutyrate metabolic process (GO:0046361)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving 2-oxobutyrate, the anion of the organic acid 2-oxobutyric acid, which contains a ketone group on carbon 2.
Synonyms: 2-oxobutyrate metabolism; alpha-ketobutyrate metabolic process; alpha-ketobutyrate metabolism
Comment: This term was obsoleted because it is an unnecessary grouping term.
ribitol biosynthetic process (GO:0046362)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of ribitol, a pentitol derived formally by reduction of the -CHO group of either D- or L-ribose.
Synonyms: ribitol anabolism; ribitol biosynthesis; ribitol formation; ribitol synthesis
ribitol catabolic process (GO:0046363)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of ribitol, a pentitol derived formally by reduction of the -CHO group of either D- or L-ribose.
Synonyms: ribitol breakdown; ribitol catabolism; ribitol degradation
monosaccharide biosynthetic process (GO:0046364)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of monosaccharides, polyhydric alcohols containing either an aldehyde or a keto group and between three to ten or more carbon atoms.
Synonyms: monosaccharide anabolism; monosaccharide biosynthesis; monosaccharide formation; monosaccharide synthesis
obsolete allose biosynthetic process (GO:0046366)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of allose, allo-hexose, an aldohexose similar to glucose, differing only in the configuration of the hydroxyl group of C-3.
Synonyms: allose anabolism; allose biosynthesis; allose formation; allose synthesis
Comment: The reason for obsoletion is that this term is practically equivalent to D-allose biosynthetic process.
obsolete allose catabolic process (GO:0046367)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the breakdown of allose, allo-hexose, an aldohexose similar to glucose, differing only in the configuration of the hydroxyl group of C-3.
Synonyms: allose breakdown; allose catabolism; allose degradation
Comment: The reason for obsoletion is that this term is practically equivalent to D-allose catabolic process.
GDP-L-fucose metabolic process (GO:0046368)
Namespace: biological_process
Definition: The chemical reactions and pathways involving GDP-L-fucose, a substance composed of L-fucose in glycosidic linkage with guanosine diphosphate.
Synonyms: GDP-L-fucose metabolism
galactose biosynthetic process (GO:0046369)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of galactose, the aldohexose galacto-hexose.
Synonyms: galactose anabolism; galactose biosynthesis; galactose formation; galactose synthesis
fructose biosynthetic process (GO:0046370)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of fructose, the ketohexose arabino-2-hexulose.
Synonyms: fructose anabolism; fructose biosynthesis; fructose formation; fructose synthesis
obsolete dTDP-mannose metabolic process (GO:0046371)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving dTDP-mannose, a substance composed of mannose in glycosidic linkage with deoxyribosylthymine diphosphate.
Synonyms: dTDP-mannose metabolism
Comment: This term was obsoleted because it is an unnecessary grouping term.
obsolete D-arabinose metabolic process (GO:0046372)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving D-arabinose, the D-enantiomer of arabino-pentose. D-arabinose occurs in plant glycosides and is a constituent of arabinonucleosides.
Synonyms: D-arabinose metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
L-arabinose metabolic process (GO:0046373)
Namespace: biological_process
Definition: The chemical reactions and pathways involving L-arabinose, the D-enantiomer of arabino-pentose. L-arabinose occurs free, e.g. in the heartwood of many conifers, and in the combined state, in both furanose and pyranose forms, as a constituent of various plant hemicelluloses, bacterial polysaccharides etc.
Synonyms: L-arabinose metabolism
teichoic acid metabolic process (GO:0046374)
Namespace: biological_process
Definition: The chemical reactions and pathways involving teichoic acid, any polymer occurring in the cell wall, membrane or capsule of Gram-positive bacteria and containing chains of glycerol phosphate or ribitol phosphate residues.
Synonyms: teichoic acid metabolism
K antigen metabolic process (GO:0046375)
Namespace: biological_process
Definition: The chemical reactions and pathways involving K antigen, a capsular polysaccharide antigen carried on the surface of bacterial capsules that masks somatic (O) antigens.
Synonyms: K antigen metabolism
obsolete GDP-alpha-D-mannosylchitobiosyldiphosphodolichol metabolic process (GO:0046376)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving GDP-alpha-D-mannosylchitobiosyldiphosphodolichol, a substance composed of mannosylchitobiosyldiphosphodolichol in glycosidic linkage with guanosine diphosphate.
Synonyms: GDP-alpha-D-mannosylchitobiosyldiphosphodolichol metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
colanic acid metabolic process (GO:0046377)
Namespace: biological_process
Definition: The chemical reactions and pathways involving colanic acid, a capsular bacterial polysaccharide composed of glucose, galactose, fucose and glucuronic acid residues.
Synonyms: colanic acid metabolism
enterobacterial common antigen metabolic process (GO:0046378)
Namespace: biological_process
Definition: The chemical reactions and pathways involving enterobacterial common antigen, an acidic polysaccharide containing N-acetyl-D-glucosamine, N-acetyl-D-mannosaminouronic acid, and 4-acetamido-4,6-dideoxy-D-galactose. A major component of the cell wall outer membrane of Gram-negative bacteria.
Synonyms: enterobacterial common antigen metabolism
obsolete extracellular polysaccharide metabolic process (GO:0046379)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving polysaccharides used in extracellular structures.
Synonyms: extracellular polysaccharide metabolism
Comment: The reason for obsoletion is that this term is redundant with GO:0005976, polysaccharide metabolic process
N-acetylneuraminate biosynthetic process (GO:0046380)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of N-acetylneuraminate, the anion of 5-(acetylamino)-3,5-dideoxy-D-glycero-D-galacto-non-3-ulosonic acid.
Synonyms: N-acetylneuraminate anabolism; N-acetylneuraminate biosynthesis; N-acetylneuraminate formation; N-acetylneuraminate synthesis
CMP-N-acetylneuraminate metabolic process (GO:0046381)
Namespace: biological_process
Definition: The chemical reactions and pathways involving CMP-N-acetylneuraminate, a substance composed of 5-(acetylamino)-3,5-dideoxy-D-glycero-D-galacto-non-3-ulosonic acid in glycosidic linkage with cytidine monophosphate.
Synonyms: CMP-N-acetylneuraminate metabolism
obsolete GDP-D-rhamnose metabolic process (GO:0046382)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving GDP-D-rhamnose, a substance composed of rhamnose in glycosidic linkage with guanosine diphosphate.
Synonyms: GDP-D-rhamnose metabolism
Comment: This term was obsoleted because it is an unnecessary grouping term.
obsolete dTDP-rhamnose metabolic process (GO:0046383)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving dTDP-rhamnose, a substance composed of rhamnose in glycosidic linkage with deoxyribosylthymine diphosphate.
Synonyms: dTDP-rhamnose metabolism
Comment: This term was obsoleted because it is an unnecessary grouping term.
obsolete 2-deoxyribose 1-phosphate metabolic process (GO:0046384)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving 2-deoxyribose 1-phosphate, the phosphorylated sugar 1-phospho-2-deoxyribose.
Synonyms: 2-deoxyribose 1-phosphate metabolism; deoxyribose 1-phosphate metabolic process; deoxyribose 1-phosphate metabolism
Comment: This term was obsoleted because it is an unnecessary grouping term.
deoxyribose phosphate biosynthetic process (GO:0046385)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of deoxyribose phosphate, the phosphorylated sugar 2-deoxy-erythro-pentose.
Synonyms: deoxyribose phosphate anabolism; deoxyribose phosphate biosynthesis; deoxyribose phosphate formation; deoxyribose phosphate synthesis
deoxyribose phosphate catabolic process (GO:0046386)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of deoxyribose phosphate, the phosphorylated sugar 2-deoxy-erythro-pentose.
Synonyms: deoxyribose phosphate breakdown; deoxyribose phosphate catabolism; deoxyribose phosphate degradation
obsolete deoxyribose 1,5-bisphosphate metabolic process (GO:0046387)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving deoxyribose 1,5-bisphosphate, the diphosphorylated sugar 1,5-diphospho-2-deoxyribose.
Synonyms: deoxyribose 1,5-bisphosphate metabolism
Comment: This term was obsoleted because it is an unnecessary grouping term.
obsolete deoxyribose 5-phosphate metabolic process (GO:0046389)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving deoxyribose 5-phosphate, the phosphorylated sugar 5-phospho-2-deoxyribose.
Synonyms: deoxyribose 5-phosphate metabolism
Comment: This term was obsoleted because it is an unnecessary grouping term.
ribose phosphate biosynthetic process (GO:0046390)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of ribose phosphate, any phosphorylated ribose sugar.
Synonyms: ribose phosphate anabolism; ribose phosphate biosynthesis; ribose phosphate formation; ribose phosphate synthesis
5-phosphoribose 1-diphosphate metabolic process (GO:0046391)
Namespace: biological_process
Definition: The chemical reactions and pathways involving 5-phosphoribose 1-diphosphate, also known as 5-phosphoribosyl-1-pyrophosphate.
Synonyms: 5-phosphoribose 1-diphosphate metabolism; PRPP metabolic process