LiteFold/GO huggingface dataset:
photosystem II oxygen evolving complex assembly (GO:0010270)
Namespace: biological_process
Definition: The aggregation, arrangement and bonding together of a set of components to form the oxygen evolving complex (OEC) of photosystem II on a thylakoid membrane. The OEC protects the calcium-4 manganese-5 oxide cluster which is bound to the D1 and CP43 proteins. The exact protein composition of the OEC varies between cyanobacteria and plants, and in plants consists of three extrinsic nuclear-encoded polypeptides: PsbO, PsbP and PsbQ.
Synonyms: OEC (PSII) ASSEMBLY
response to silver ion (GO:0010272)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a silver ion stimulus.
detoxification of copper ion (GO:0010273)
Namespace: biological_process
Definition: Any process that reduces or removes the toxicity of copper ion. These include transport of copper away from sensitive areas and to compartments or complexes whose purpose is sequestration of copper ion.
hydrotropism (GO:0010274)
Namespace: biological_process
Definition: Growth or movement in a sessile organism toward or away from water, as of the roots of a plant.
NAD(P)H dehydrogenase complex assembly (GO:0010275)
Namespace: biological_process
Definition: The aggregation, arrangement and bonding together of a set of components to form NAD(P)H dehydrogenase complex, which is involved in electron transport from an unidentified electron donor, possibly NAD(P)H or ferredoxin(Fd) to the plastoquinone pool.
Synonyms: NAD(P)H dehydrogenase complex (plastoquinone) assembly
phytol kinase activity (GO:0010276)
Namespace: molecular_function
Definition: Catalysis of the reaction: phytol + CTP = phytyl monophosphate + CDP + H+.
chlorophyllide a oxygenase activity (GO:0010277)
Namespace: molecular_function
Definition: Catalysis of the reactions: chlorophyllide a + 2 H+ + 2 NADPH + 2 O2 = chlorophyllide b + 3 H2O + 2 NADP+.
Synonyms: CAO activity; chlorophyll a oxygenation activity; chlorophyll b synthesis activity; chlorophyll-b synthesis activity; chlorophyllide a:oxygen 7-oxidoreduction activity; chlorophyllide-a oxygenation activity
chloroplast outer membrane translocon (GO:0010278)
Namespace: cellular_component
Definition: The protein transport machinery of the chloroplast outer membrane that contains at least three components Toc159, Toc75 and Toc34, interacts with precursor proteins which are imported into the chloroplast in a GTP dependant manner.
UDP-L-rhamnose synthase activity (GO:0010280)
Namespace: molecular_function
Definition: Catalysis of the reaction: UDP-D-glucose + NADPH + H+ = UDP-L-rhamnose + NADP+ + H2O.
Synonyms: UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase-4-reductase activity
senescence-associated vacuole (GO:0010282)
Namespace: cellular_component
Definition: A lytic vacuole that is maintained at acidic pH and has different tonoplast composition compared to the central vacuole. Found during leaf senescence and develops in the peripheral cytoplasm of cells that contain chloroplast.
Synonyms: senescence associated vacuole
pinoresinol reductase activity (GO:0010283)
Namespace: molecular_function
Definition: Catalysis of the reaction: pinoresinol + NADPH + H+ = lariciresinol + NADP+.
lariciresinol reductase activity (GO:0010284)
Namespace: molecular_function
Definition: Catalysis of the reaction: lariciresinol + NADPH + H+ = secoisolariciresinol + NADP+.
L,L-diaminopimelate:2-oxoglutarate transaminase activity (GO:0010285)
Namespace: molecular_function
Definition: Catalysis of the reaction: 2-oxoglutarate + LL-2,6-diaminopimelate = (S)-2,3,4,5-tetrahydrodipicolinate + L-glutamate + H2O + H+.
Synonyms: L,L-diaminopimelate aminotransferase activity; LL-2,6-diaminoheptanedioate:2-oxoglutarate aminotransferase activity; LL-DAP aminotransferase activity; LL-DAP-AT activity; LL-diaminopimelate aminotransferase activity; LL-diaminopimelate transaminase activity
heat acclimation (GO:0010286)
Namespace: biological_process
Definition: Any process that increases heat tolerance of an organism in response to high temperatures.
Synonyms: thermotolerance
plastoglobule (GO:0010287)
Namespace: cellular_component
Definition: A lipoprotein particle present in chloroplasts. They are rich in non-polar lipids (triglycerides, esters) as well as in prenylquinones, plastoquinone and tocopherols. Plastoglobules are often associated with thylakoid membranes, suggesting an exchange of lipids with thylakoids.
Synonyms: PG; plastoglobuli
response to lead ion (GO:0010288)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lead ion stimulus.
homogalacturonan biosynthetic process (GO:0010289)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of the pectidic homogalacturonan, characterized by a backbone of (1->4)-linked alpha-D-GalpA residues that can be methyl-esterified at C-6 and carry acetyl groups on O-2 and O-3.
chlorophyll catabolite transmembrane transporter activity (GO:0010290)
Namespace: molecular_function
Definition: Enables the directed movement of chlorophyll catabolites such as non-fluorescent chlorophyll catabolites (NCCs), from one side of a membrane to the other.
beta-carotene 3-hydroxylase activity (GO:0010291)
Namespace: molecular_function
Definition: Catalysis of the reaction: all-trans-beta-carotene + 4 H+ + 2 O2 + 4 reduced [2Fe-2S]-[ferredoxin] = all-trans-zeaxanthin + 2 H2O + 4 oxidized [2Fe-2S]-[ferredoxin].
Synonyms: beta-carotene hydroxylase activity; carotene beta-ring hydroxylase activity
GTP:GDP antiporter activity (GO:0010292)
Namespace: molecular_function
Definition: Catalysis of the reaction: GTP(out) + GDP(in) = GTP(in) + GDP(out).
abscisic aldehyde oxidase activity (GO:0010293)
Namespace: molecular_function
Definition: Catalysis of the reaction: a 2-cis-(+)-abscisic aldehyde + H2O + O2 = 2-cis-(+)-abscisate + H+ + H2O2.
Synonyms: AAO3; abscisic-aldehyde oxidase activity; abscisic-aldehyde:oxygen oxidoreductase activity; AOdelta
abscisic acid glucosyltransferase activity (GO:0010294)
Namespace: molecular_function
Definition: Catalysis of the reaction: (+)-abscisate + UDP-D-glucose = abscisic acid glucose ester + UDP.
(+)-abscisic acid 8'-hydroxylase activity (GO:0010295)
Namespace: molecular_function
Definition: Catalysis of the reaction: (+)-abscisate + H+ + NADPH + O2 = (+)-8'-hydroxyabscisate + H2O + NADP+.
Synonyms: (+)-ABA 8'-hydroxylase activity; ABA 8'-hydroxylase activity; ABA 8'-Hydroxylase activity, Abscisate 8'-hydroxylase activity; abscisate,NADPH:oxygen oxidoreductase (8'-hydroxylating); abscisic acid 8'-hydroxylase activity
prenylcysteine methylesterase activity (GO:0010296)
Namespace: molecular_function
Definition: Catalysis of the reaction: protein C-terminal S-farnesyl-L-cysteine methyl ester + H2O = protein C-terminal S-farnesyl-L-cysteine + methanol + H+.
heteropolysaccharide binding (GO:0010297)
Namespace: molecular_function
Definition: Binding to a heteropolysaccharide, a glycan composed of more than one type of monosaccharide residue.
Synonyms: heteroglycan binding
dihydrocamalexic acid decarboxylase activity (GO:0010298)
Namespace: molecular_function
Definition: Catalysis of the reaction: dihydrocamalexic acid = camalexin + CO2 + H+.
detoxification of cobalt ion (GO:0010299)
Namespace: biological_process
Definition: Any process that reduces or removes the toxicity of cobalt ion (Co2+). These include transport of cobalt away from sensitive areas and to compartments or complexes whose purpose is sequestration of cobalt ion.
xanthoxin dehydrogenase (NAD+) activity (GO:0010301)
Namespace: molecular_function
Definition: Catalysis of the reaction: NAD+ + xanthoxin = (+)-abscisic aldehyde + H+ + NADH.
Synonyms: ABA2; xanthoxin dehydrogenase activity; xanthoxin oxidase activity; xanthoxin:NAD+ oxidoreductase activity
limit dextrinase activity (GO:0010303)
Namespace: molecular_function
Definition: Catalysis of the hydrolysis of (1,6)-alpha-D-glucosidic linkages in alpha- and beta-limit dextrins of amylopectin and glycogen, and in amylopectin and pullulan.
Synonyms: amylopectin-1,6-glucosidase activity; dextrin alpha-1,6-glucanohydrolase activity; R-enzyme
PSII associated light-harvesting complex II catabolic process (GO:0010304)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of one or more components of the light-harvesting complex of photosystem II.
Synonyms: LHCII catabolism
leaf vascular tissue pattern formation (GO:0010305)
Namespace: biological_process
Definition: Vascular tissue pattern formation as it occurs in the leaf of vascular plants.
rhamnogalacturonan II biosynthetic process (GO:0010306)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of rhamnogalacturonan II, a low molecular mass (5 - 10KDa) pectic polysaccharide, conserved in the primary walls of dicotyledenous and monocotyledenous plants and gymnosperms.
acetylglutamate kinase regulator activity (GO:0010307)
Namespace: molecular_function
Definition: Binds to and modulates the activity of acetylglutamate kinase.
acireductone dioxygenase (Ni2+-requiring) activity (GO:0010308)
Namespace: molecular_function
Definition: Catalysis of the reaction: 1,2-dihydroxy-5-(methylthio)pent-1-en-3-one + O2 = 3-(methylthio)propanoate + CO + formate.
Synonyms: 1,2-dihydroxy-5-(methylthio)pent-1-en-3-one:oxygen oxidoreductase (formate- and CO-forming); 2-hydroxy-3-keto-5-thiomethylpent-1-ene dioxygenase activity; acireductone dioxygenase activity; ARD activity; E-2 activity
regulation of hydrogen peroxide metabolic process (GO:0010310)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving hydrogen peroxide.
Synonyms: regulation of hydrogen peroxide metabolism
lateral root formation (GO:0010311)
Namespace: biological_process
Definition: The process that gives rise to a lateral root. This process pertains to the initial formation of a structure from unspecified parts. A lateral root primordium represents an organized group of cells derived from the root pericycle that will differentiate into a new root, as opposed to the initiation of the main root from the embryo proper.
Synonyms: lateral root primordium development
detoxification of zinc ion (GO:0010312)
Namespace: biological_process
Definition: Any process that reduces or removes the toxicity of zinc ion. These include transport of zinc away from sensitive areas and to compartments or complexes whose purpose is sequestration of zinc ion.
phytochrome binding (GO:0010313)
Namespace: molecular_function
Definition: Binding to a phytochrome.
phosphatidylinositol-5-phosphate binding (GO:0010314)
Namespace: molecular_function
Definition: Binding to phosphatidylinositol-5-phosphate, a derivative of phosphatidylinositol in which the inositol ring is phosphorylated at the 5' position.
auxin export across the plasma membrane (GO:0010315)
Namespace: biological_process
Definition: The directed movement of auxins from inside of a cell, across the plasma membrane and into the extracellular region.
Synonyms: auxin efflux; auxin export
pyrophosphate-dependent phosphofructokinase complex (GO:0010316)
Namespace: cellular_component
Definition: Heterodimeric complex that catalyzes the pyrophosphate-dependent phosphorylation of D-fructose 6-phosphate into D-fructose 1,6-bisphosphate.
Synonyms: PFK complex
pyrophosphate-dependent phosphofructokinase complex, alpha-subunit complex (GO:0010317)
Namespace: cellular_component
Definition: Refers to the alpha subunit of the heterodimeric complex that possesses pyrophosphate-dependent phosphofructokinase activity.
Synonyms: PFK complex, alpha-subunit
pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex (GO:0010318)
Namespace: cellular_component
Definition: Refers to the beta subunit of the heterodimeric complex that possesses pyrophosphate-dependent phosphofructokinase activity.
Synonyms: PFK complex, beta-subunit
stromule (GO:0010319)
Namespace: cellular_component
Definition: Thin filamentous structure extending from the surface of all plastid types examined so far, including chloroplast, proplastid, etioplast, leucoplast, amyloplast, and chromoplast. In general, stromules are more abundant in tissues containing non-green plastids, and in cells containing smaller plastids. The primary function of stromules is still unresolved, although the presence of stromules markedly increases the plastid surface area, potentially increasing transport to and from the cytosol. Other functions of stromules, such as transfer of macromolecules between plastids and starch granule formation in cereal endosperm, may be restricted to particular tissues and cell types.
Synonyms: Stroma-filled tubule
obsolete arginine/lysine endopeptidase activity (GO:0010320)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the hydrolysis of peptide linkages in oligopeptides or polypeptides by a reaction mechanism in which arginine or lysine residues act as nucleophiles.
Synonyms: arginine/lysine endopeptidase activity
Comment: This term was made obsolete because it was defined incorrectly: there are no known peptidases using a catalytic mechanism involving arginine and lysine, and the Arabidopsis metacaspases that prompted addition of this term are in fact cysteine-type endopeptidases.
regulation of vegetative phase change (GO:0010321)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of vegetative phase change. Vegetative phase change is the set of post-embryonic processes involved in the transition of a plant from a juvenile phase of vegetative development to an adult phase of vegetative development.
regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (GO:0010322)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of isopentenyl diphosphate produced via the methylerythritol (MEP) pathway (mevalonate-independent).
Synonyms: regulation of isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway
negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (GO:0010323)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of isopentenyl diphosphate produced via the methylerythritol (MEP) pathway (mevalonate-independent).
Synonyms: down regulation of isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway; down-regulation of isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway; downregulation of isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway; inhibition of isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway; negative regulation of isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway
membrane invagination (GO:0010324)
Namespace: biological_process
Definition: The infolding of a membrane.
Synonyms: single-organism membrane invagination
raffinose family oligosaccharide biosynthetic process (GO:0010325)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of raffinose family oligosaccharides (RFOs, such as raffinose, stachyose, verbascose and other molecules with a higher degree of galactosyl polymerization).
Synonyms: raffinose family oligosaccharide biosynthesis
L-methionine:oxo-acid transaminase activity (GO:0010326)
Namespace: molecular_function
Definition: Catalysis of the reaction: a 2-oxocarboxylate + L-methionine = 4-methylsulfanyl-2-oxobutanoate + an L-alpha-amino acid.
Synonyms: methionine-oxo-acid transaminase activity
acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase activity (GO:0010327)
Namespace: molecular_function
Definition: Catalysis of the reaction: acetyl-CoA + (Z)-3-hexen-1-ol = CoA + (Z)-3-hexen-1-yl acetate.
Synonyms: hexenol acetyltransferase
auxin influx transmembrane transporter activity (GO:0010328)
Namespace: molecular_function
Definition: Enables the transfer of auxin, from one side of a membrane to the other, into a cell.
Synonyms: auxin influx facilitator
auxin efflux transmembrane transporter activity (GO:0010329)
Namespace: molecular_function
Definition: Enables the transfer of auxin, from one side of a membrane to the other, out of a cell.
Synonyms: auxin efflux carrier; auxin efflux facilitator
cellulose synthase complex (GO:0010330)
Namespace: cellular_component
Definition: A large, multimeric protein complex, organized in a rosette, which catalyzes the biosynthesis of cellulose for the plant cell wall.
Synonyms: CESA complex
gibberellin binding (GO:0010331)
Namespace: molecular_function
Definition: Binding to a gibberellin, a plant hormone that regulates aspects of plant growth.
Synonyms: gibberellic acid receptor; gibberellin receptor
response to gamma radiation (GO:0010332)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gamma radiation stimulus. Gamma radiation is a form of electromagnetic radiation (EMR) or light emission of a specific frequency produced from sub-atomic particle interaction, such as electron-positron annihilation and radioactive decay. Gamma rays are generally characterized as EMR having the highest frequency and energy, and also the shortest wavelength, within the electromagnetic radiation spectrum.
Synonyms: response to gamma ray; response to gamma-ray photon
terpene synthase activity (GO:0010333)
Namespace: molecular_function
Definition: Catalysis of the formation of cyclic terpenes through the cyclization of linear terpenes (e.g. isopentenyl-PP, geranyl-PP, farnesyl-PP and geranylgeranyl-PP) containing varying numbers of isoprene units.
sesquiterpene synthase activity (GO:0010334)
Namespace: molecular_function
Definition: Catalysis of the reaction: trans,trans-farnesyl diphosphate = a sesquiterpene + diphosphate. Sesquiterpenes are terpenes containing three isoprene units, i.e. 15 carbons.
response to non-ionic osmotic stress (GO:0010335)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of non-ionic solutes (e.g. mannitol, sorbitol) in the environment.
gibberellic acid homeostasis (GO:0010336)
Namespace: biological_process
Definition: Any biological process involved in the maintenance of an internal steady state of gibberellic acid; may involve transport, biosynthesis, catabolism or conjugation.
Synonyms: gibberellin homeostasis
regulation of salicylic acid metabolic process (GO:0010337)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving salicylic acid.
Synonyms: regulation of salicylic acid metabolism
leaf formation (GO:0010338)
Namespace: biological_process
Definition: The process that gives rise to a leaf. This process pertains to the initial formation of a structure from unspecified parts.
external side of cell wall (GO:0010339)
Namespace: cellular_component
Definition: The side of the cell wall that is opposite to the side that faces the cell and its contents.
carboxyl-O-methyltransferase activity (GO:0010340)
Namespace: molecular_function
Definition: Catalysis of the transfer of a methyl group to the carboxyl group of an acceptor molecule to form a methyl ester.
gibberellin carboxyl-O-methyltransferase activity (GO:0010341)
Namespace: molecular_function
Definition: Catalysis of the reaction: S-adenosyl-L-methionine + a gibberellin = S-adenosyl-L-homocysteine + a gibberellin methyl ester.
endosperm cellularization (GO:0010342)
Namespace: biological_process
Definition: The separation of the multi-nucleate endosperm into individual cells. In many plant species, the endosperm that nurtures the embryo in the seed initially develops as a syncytium. This syncytial phase ends with simultaneous partitioning of the multi-nucleate cytoplasm into individual cells, a process referred to as cellularization.
Synonyms: cellularization of endosperm
singlet oxygen-mediated programmed cell death (GO:0010343)
Namespace: biological_process
Definition: Programmed cell death induced by singlet oxygen. Programmed cell death is the cell death resulting from activation of endogenous cellular processes.
Synonyms: light-dependent programmed cell death; programmed cell death in response to singlet oxygen
suberin biosynthetic process (GO:0010345)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of suberin monomers and suberin polyesters. Suberin monomers are derived from fatty acids and trans-cinnamic acids. The monomers are then cross-linked with glycerols.
shoot axis formation (GO:0010346)
Namespace: biological_process
Definition: The process that gives rise to a shoot axis. This process pertains to the initial formation of a structure from unspecified parts.
Synonyms: shoot formation
L-galactose-1-phosphate phosphatase activity (GO:0010347)
Namespace: molecular_function
Definition: Catalysis of the reaction: L-galactose-1-phosphate + H2O = L-galactose + phosphate.
lithium:proton antiporter activity (GO:0010348)
Namespace: molecular_function
Definition: Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Li+(in) + H+(out) = Li+(out) + H+(in).
Synonyms: lithium:hydrogen antiporter activity
L-galactose dehydrogenase activity (GO:0010349)
Namespace: molecular_function
Definition: Catalysis of the reaction: L-galactose + NAD+ = L-galactono-1,4-lactone + NADH + H+.
Synonyms: L-galactose 1-dehydrogenase activity
cellular response to magnesium starvation (GO:0010350)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of magnesium.
lithium ion transport (GO:0010351)
Namespace: biological_process
Definition: The directed movement of lithium ion into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
Synonyms: lithium transport
lithium ion export across the plasma membrane (GO:0010352)
Namespace: biological_process
Definition: The directed movement of lithium ion out of a cell or organelle.
Synonyms: lithium export; lithium ion efflux; lithium ion export
response to trehalose (GO:0010353)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a trehalose stimulus.
Synonyms: response to trehalose stimulus
homogentisate prenyltransferase activity (GO:0010354)
Namespace: molecular_function
Definition: Catalysis of the transfer of a prenyl group from one compound (donor) to homogentisic acid.
homogentisate farnesyltransferase activity (GO:0010355)
Namespace: molecular_function
Definition: Catalysis of the reaction: homogentisic acid + farnesyl diphosphate = 2-methyl-6-farnesylplastoquinol.
homogentisate geranylgeranyltransferase activity (GO:0010356)
Namespace: molecular_function
Definition: Catalysis of the reaction: (2E,6E,10E)-geranylgeranyl diphosphate + H+ + homogentisate = 6-geranylgeranyl-2-methylbenzene-1,4-diol + CO2 + diphosphate.
Synonyms: HGGT activity; homogentisate geranylgeranyl transferase activity