LiteFold/GO huggingface dataset:
obsolete autophagic death (sensu Saccharomyces) (GO:0007577)
Namespace: biological_process
Definition: OBSOLETE. This process is a type of programmed cell death pathway similar to apoptosis and necrosis observed in multicellular organisms. It is characterized by cellular enlargement (necrosis) and presence of many autophagic bodies along with degradation of cellular components (nucleus, Golgi, ER), protein, DNA and RNA.
Synonyms: autophagic death (sensu Saccharomyces)
Comment: This term was made obsolete because a more correct term has been created.
obsolete aging dependent sterility (sensu Saccharomyces) (GO:0007578)
Namespace: biological_process
Definition: OBSOLETE. A haploid's inability to mate due to the loss of silencing at the mating-type loci, resulting in expression of both of the normally silent mating-type cassettes.
Synonyms: aging dependent sterility (sensu Saccharomyces)
Comment: This term was made obsolete because it reflected a trait or phenotype.
obsolete senescence factor accumulation (GO:0007579)
Namespace: biological_process
Definition: OBSOLETE. (Was not defined before being made obsolete).
Synonyms: senescence factor accumulation
Comment: This term was made obsolete because it does not represent a process.
obsolete extrachromosomal circular DNA accumulation involved in cell aging (GO:0007580)
Namespace: biological_process
Definition: OBSOLETE. Increase in abundance, as cells age, of circular DNA molecules that originate in the chromosome but are excised and circularized, often by intramolecular homologous recombination between direct tandem repeats, and replicated independently of chromosomal replication.
Synonyms: extrachromosomal circular DNA accumulation during cell ageing; extrachromosomal circular DNA accumulation during cell aging
Comment: This term was obsoleted because it represents a phenotype.
obsolete age-dependent yeast cell size increase (GO:0007581)
Namespace: biological_process
Definition: OBSOLETE. (Was not defined before being made obsolete).
Synonyms: age-dependent yeast cell size increase
Comment: This term was made obsolete because it does not describe a biological process.
obsolete killer activity (GO:0007583)
Namespace: biological_process
Definition: OBSOLETE. (Was not defined before being made obsolete).
Synonyms: killer activity
Comment: This term was made obsolete because it is ambiguous; 'killer activity' could refer to several different processes.
response to nutrient (GO:0007584)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus.
Synonyms: nutritional response pathway; response to nutrients
respiratory gaseous exchange by respiratory system (GO:0007585)
Namespace: biological_process
Definition: The process of gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms.
Synonyms: breathing; respiration
digestion (GO:0007586)
Namespace: biological_process
Definition: The whole of the physical, chemical, and biochemical processes carried out by multicellular organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism.
excretion (GO:0007588)
Namespace: biological_process
Definition: The elimination by an organism of the waste products that arise as a result of metabolic activity. These products include water, carbon dioxide (CO2), and nitrogenous compounds.
body fluid secretion (GO:0007589)
Namespace: biological_process
Definition: The controlled release of a fluid by a cell or tissue in an animal.
obsolete fat body metabolic process (sensu Insecta) (GO:0007590)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving the fat body. A fat body is a fat-containing cellular structure which serves as an energy reserve. As in, but not restricted to, the true insects (Insecta, ncbi_taxonomy_id:50557).
Synonyms: fat body metabolic process (sensu Insecta)
Comment: This term was made obsolete because it represents metabolism within the fat body not of the fat body.
molting cycle, chitin-based cuticle (GO:0007591)
Namespace: biological_process
Definition: The periodic shedding of part or all of a chitin-based cuticle, which is then replaced by a new cuticle. An example of this is found in Drosophila melanogaster.
Synonyms: chitin-based cuticle molting cycle
chitin-based cuticle sclerotization (GO:0007593)
Namespace: biological_process
Definition: The process of hardening of a chitin-based cuticle.
Synonyms: chitin-based cuticle tanning; cuticle hardening
puparial adhesion (GO:0007594)
Namespace: biological_process
Definition: The adhesion of the puparia of Diptera to their substrate; normally effected by a 'glue' secreted by the larval salivary gland and expectorated at the time of pupariation.
Synonyms: puparial glue
blood coagulation (GO:0007596)
Namespace: biological_process
Definition: The sequential process in which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers.
Synonyms: blood clotting
blood coagulation, intrinsic pathway (GO:0007597)
Namespace: biological_process
Definition: A protein activation cascade that initiates blood coagulation, triggered when Factor XII, prekallikrein (PK) and high-molecular-weight kininogen  (HK) assemble on a suitable surface or polymer. This results in the reciprocal activation of factor XII to Factor XIIa by kallikrein, and PK to kallikrein by Factor XIIa. The resulting generation of Factor XIIa activates Factor XI to Factor XIa, which then converts Factor IX to Factor IXa. Factor IXa converts Factor X to Xa. Factor Xa then initiates the common pathway.
Synonyms: initiation of blood coagulation cascade, contact activation system; initiation of blood coagulation cascade, contact pathway
Comment: See also the biological process term 'blood coagulation, extrinsic pathway ; GO:0007598' and 'blood coagulation, common pathway ; GO:0072377'.
blood coagulation, extrinsic pathway (GO:0007598)
Namespace: biological_process
Definition: A protein activation cascade that initiates blood coagulation, starting with a signal from tissue factor (TF), a cell-surface, integral-membrane protein, which converts Factor IX to IXa, and Factor IXa converts Factor X to Xa. Factor Xa then initiates the common pathway.
Synonyms: initiation of blood coagulation cascade, tissue factor pathway
Comment: See also the biological process term 'blood coagulation, intrinsic pathway ; GO:0007597' and 'blood coagulation, common pathway ; GO:0072377'.
hemostasis (GO:0007599)
Namespace: biological_process
Definition: The stopping of bleeding (loss of body fluid) or the arrest of the circulation to an organ or part.
sensory perception (GO:0007600)
Namespace: biological_process
Definition: The series of events required for an organism to receive a sensory stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process.
visual perception (GO:0007601)
Namespace: biological_process
Definition: The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image.
Synonyms: sense of sight; sensory visual perception; vision
phototransduction (GO:0007602)
Namespace: biological_process
Definition: The sequence of reactions within a cell required to convert absorbed photons into a molecular signal.
Synonyms: opsin; phototransduction, visible light, light adaptation; phototrophin mediated phototransduction
phototransduction, visible light (GO:0007603)
Namespace: biological_process
Definition: The sequence of reactions within a cell required to convert absorbed photons from visible light into a molecular signal. A visible light stimulus is electromagnetic radiation that can be perceived visually by an organism; for organisms lacking a visual system, this can be defined as light with a wavelength within the range 380 to 780 nm.
Synonyms: visual cascade; visual transduction
phototransduction, UV (GO:0007604)
Namespace: biological_process
Definition: The sequence of reactions within a cell required to convert absorbed photons from UV light into a molecular signal; ultraviolet radiation is electromagnetic radiation with a wavelength in the range of 10 to 400 nanometers.
Synonyms: phototransduction, ultraviolet light; phototransduction, ultraviolet radiation; phototransduction, UV light; phototransduction, UV radiation; UV-sensitive opsin
sensory perception of sound (GO:0007605)
Namespace: biological_process
Definition: The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound.
Synonyms: hearing; perception of sound
obsolete taste perception (GO:0007607)
Namespace: biological_process
Definition: OBSOLETE. The series of events required for the chemical composition of a soluble stimulus to be received and converted to a molecular signal.
Synonyms: taste perception
Comment: This term was made obsolete because it was not clear whether the term applied to the whole process of taste perception or just the sensory transduction stage.
sensory perception of smell (GO:0007608)
Namespace: biological_process
Definition: The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors. This is a neurological process.
Synonyms: olfaction; scent perception; sense of smell; smell perception
behavior (GO:0007610)
Namespace: biological_process
Definition: The internally coordinated responses (actions or inactions) of animals (individuals or groups) to internal or external stimuli, via a mechanism that involves nervous system activity.
Synonyms: behavioral response to stimulus; behaviour; behavioural response to stimulus; single-organism behavior
Comment: 1. Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation reviews.\n2. While a broader definition of behavior encompassing plants and single cell organisms would be justified on the basis of some usage (see PMID:20160973 for discussion), GO uses a tight definition that limits behavior to animals and to responses involving the nervous system, excluding plant responses that GO classifies under development, and responses of unicellular organisms that has general classifications for covering the responses of cells in multicellular organisms (e.g. cell chemotaxis).
learning or memory (GO:0007611)
Namespace: biological_process
Definition: The acquisition and processing of information and/or the storage and retrieval of this information over time.
learning (GO:0007612)
Namespace: biological_process
Definition: Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience.
memory (GO:0007613)
Namespace: biological_process
Definition: The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task).
short-term memory (GO:0007614)
Namespace: biological_process
Definition: The memory process that deals with the storage, retrieval and modification of information received a short time (up to about 30 minutes) ago. This type of memory is typically dependent on direct, transient effects of second messenger activation.
anesthesia-resistant memory (GO:0007615)
Namespace: biological_process
Definition: The memory process that results in the formation of consolidated memory resistant to disruption of the patterned activity of the brain, without requiring protein synthesis.
long-term memory (GO:0007616)
Namespace: biological_process
Definition: The memory process that deals with the storage, retrieval and modification of information a long time (typically weeks, months or years) after receiving that information. This type of memory is typically dependent on gene transcription regulated by second messenger activation.
mating behavior (GO:0007617)
Namespace: biological_process
Definition: The behavioral interactions between organisms for the purpose of mating, or sexual reproduction resulting in the formation of zygotes.
Synonyms: mating behaviour
mating (GO:0007618)
Namespace: biological_process
Definition: The pairwise union of individuals for the purpose of sexual reproduction, ultimately resulting in the formation of zygotes.
copulation (GO:0007620)
Namespace: biological_process
Definition: The act of sexual union between male and female, involving the transfer of sperm.
negative regulation of female receptivity (GO:0007621)
Namespace: biological_process
Definition: Any process that stops, prevents or reduces the receptiveness of a female to male advances.
Synonyms: down regulation of female receptivity; down-regulation of female receptivity; downregulation of female receptivity; inhibition of female receptivity
rhythmic behavior (GO:0007622)
Namespace: biological_process
Definition: The specific behavior of an organism that recur with measured regularity.
Synonyms: rhythmic behavioral response to stimulus; rhythmic behaviour; rhythmic behavioural response to stimulus
circadian rhythm (GO:0007623)
Namespace: biological_process
Definition: Any biological process in an organism that recurs with a regularity of approximately 24 hours.
Synonyms: circadian process; circadian response; response to circadian rhythm
ultradian rhythm (GO:0007624)
Namespace: biological_process
Definition: The specific actions or reactions of an organism that recur with a regularity more frequent than every 24 hours.
grooming behavior (GO:0007625)
Namespace: biological_process
Definition: The specific behavior of an organism relating to grooming, cleaning and brushing to remove dirt and parasites.
Synonyms: grooming behaviour
obsolete larval behavior (sensu Insecta) (GO:0007627)
Namespace: biological_process
Definition: OBSOLETE. Behavior in a larval form of an organism, an immature organism that must undergo metamorphosis to assume adult characteristics, as seen in insects.
Synonyms: larval behavior (sensu Insecta)
Comment: This term was made obsolete because there is no clear difference between the sensu Insecta term and the generic term.
flight behavior (GO:0007629)
Namespace: biological_process
Definition: The response to external or internal stimuli that results in the locomotory process of flight. Flight is the self-propelled movement of an organism through the air.
Synonyms: flight behaviour
feeding behavior (GO:0007631)
Namespace: biological_process
Definition: Behavior associated with the intake of food.
Synonyms: behavioral response to food; behavioural response to food; eating; feeding behaviour; feeding from phloem of other organism; feeding from plant phloem; feeding from tissue of other organism; feeding from vascular tissue of another organism; feeding from xylem of other organism; feeding on or from other organism; feeding on plant sap
Comment: See also the biological process term 'behavior ; GO:0007610'.
visual behavior (GO:0007632)
Namespace: biological_process
Definition: The behavior of an organism in response to a visual stimulus.
Synonyms: behavioral response to visual stimulus; behavioural response to visual stimulus; visual behaviour
pattern orientation (GO:0007633)
Namespace: biological_process
Definition: The actions or reactions of an individual in response to the orientation of a visual pattern. This is exemplified by some classes of insects which are able to detect and learn the orientation of a set of stripes and subsequently behaviorally discriminate between horizontal, vertical or 45 degree stripes.
Synonyms: behavioral response to pattern orientation; behavioural response to pattern orientation
optokinetic behavior (GO:0007634)
Namespace: biological_process
Definition: The behavior of an organism pertaining to movement of the eyes and of objects in the visual field, as in nystagmus.
Synonyms: optokinetic behaviour
chemosensory behavior (GO:0007635)
Namespace: biological_process
Definition: Behavior that is dependent upon the sensation of chemicals.
Synonyms: behavioral response to chemical stimulus; behavioural response to chemical stimulus; chemosensory behaviour
proboscis extension reflex (GO:0007637)
Namespace: biological_process
Definition: The extension, through direct muscle actions, of the proboscis (the trunk-like extension of the mouthparts on the adult external head) in response to a nutritional stimulus.
Synonyms: behavioral response to nutritional stimulus, proboscis extension; proboscis extension in response to nutritional stimulus
mechanosensory behavior (GO:0007638)
Namespace: biological_process
Definition: Behavior that is dependent upon the sensation of a mechanical stimulus.
Synonyms: behavioral response to mechanical stimulus; behavioural response to mechanical stimulus; mechanosensory behaviour
homeostasis of number of meristem cells (GO:0007639)
Namespace: biological_process
Definition: Any biological process involved in the maintenance of the steady-state number of cells within a population of cells in the meristem.
obsolete fibrinogen (GO:0008001)
Namespace: molecular_function
Definition: OBSOLETE. (Was not defined before being made obsolete).
Synonyms: fibrinogen
Comment: This term was made obsolete because it does not describe an activity.
obsolete lamina lucida (GO:0008002)
Namespace: cellular_component
Definition: OBSOLETE. The electron-lucent layer of the basal lamina adjacent to the basal plasma membrane of the cells that rest on the lamina.
Comment: This term was made obsolete because it is thought to be an experimental artefact.
obsolete lamina reticularis (GO:0008004)
Namespace: cellular_component
Definition: OBSOLETE. A layer of the basal lamina that contains collagen fibrils and connects the basal lamina to the underlying connective tissue.
Comment: This term was obsoleted because as a layer of the basement membrane, the lamina reticularis is thought to be an artefact. See PMID:24137544 and PMID:8061357.
obsolete membrane attack complex protein beta2 chain (GO:0008008)
Namespace: cellular_component
Definition: OBSOLETE. (Was not defined before being made obsolete).
Synonyms: membrane attack complex protein beta2 chain
Comment: This term was made obsolete because it represents a single gene product and not a complex.
chemokine activity (GO:0008009)
Namespace: molecular_function
Definition: The function of a family of small chemotactic cytokines; their name is derived from their ability to induce directed chemotaxis in nearby responsive cells. All chemokines possess a number of conserved cysteine residues involved in intramolecular disulfide bond formation. Some chemokines are considered pro-inflammatory and can be induced during an immune response to recruit cells of the immune system to a site of infection, while others are considered homeostatic and are involved in controlling the migration of cells during normal processes of tissue maintenance or development. Chemokines are found in all vertebrates, some viruses and some bacteria.
structural constituent of chitin-based larval cuticle (GO:0008010)
Namespace: molecular_function
Definition: The action of a molecule that contributes to the structural integrity of the chitin-based cuticle of a larva. An example of this is found in Drosophila melanogaster.
Synonyms: structural constituent of larval cuticle
structural constituent of pupal chitin-based cuticle (GO:0008011)
Namespace: molecular_function
Definition: The action of a molecule that contributes to the structural integrity of the chitin-based cuticle of a pupa. An example of this is found in Drosophila melanogaster.
Synonyms: structural constituent of pupal cuticle
structural constituent of adult chitin-based cuticle (GO:0008012)
Namespace: molecular_function
Definition: The action of a molecule that contributes to the structural integrity of the chitin-based cuticle of an adult organism. An example of this is found in Drosophila melanogaster.
Synonyms: structural constituent of adult cuticle
beta-catenin binding (GO:0008013)
Namespace: molecular_function
Definition: Binding to a catenin beta subunit.
obsolete calcium-dependent cell adhesion molecule activity (GO:0008014)
Namespace: molecular_function
Definition: OBSOLETE. A calcium-dependent cell adhesion protein (type I membrane protein) that interacts in a homophilic manner in cell-cell interactions.
Synonyms: cadherin; calcium-dependent cell adhesion molecule activity
Comment: This term was made obsolete because it represents a gene product.
blood circulation (GO:0008015)
Namespace: biological_process
Definition: The flow of blood through the body of an animal, enabling the transport of nutrients to the tissues and the removal of waste products.
Synonyms: hemolymph circulation
regulation of heart contraction (GO:0008016)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of heart contraction. Heart contraction is the process in which the heart decreases in volume in a characteristic way to propel blood through the body.
Synonyms: regulation of cardiac contraction
microtubule binding (GO:0008017)
Namespace: molecular_function
Definition: Binding to a microtubule, a filament composed of tubulin monomers.
Synonyms: microtubule severing activity; microtubule/chromatin interaction
obsolete structural protein of chorion (sensu Drosophila) (GO:0008018)
Namespace: molecular_function
Definition: OBSOLETE. (Was not defined before being made obsolete).
Synonyms: structural protein of chorion (sensu Drosophila)
Comment: This term was made obsolete because the function is covered by a parent term.
obsolete macrophage receptor activity (GO:0008019)
Namespace: molecular_function
Definition: OBSOLETE. (Was not defined before being made obsolete).
Synonyms: macrophage receptor activity
Comment: This term was made obsolete because its name is ambiguous, and it was never defined.
G protein-coupled photoreceptor activity (GO:0008020)
Namespace: molecular_function
Definition: Combining with incidental electromagnetic radiation, particularly visible light, and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex.
Synonyms: G protein coupled photoreceptor activity; G-protein coupled photoreceptor activity; photoreceptor activity, G-protein coupled