LiteFold/GO huggingface dataset:
obsolete activation of MAPKKK activity involved in innate immune response (GO:0035422)
Namespace: biological_process
Definition: OBSOLETE. Any process that initiates the activity of the inactive enzyme MAP kinase kinase kinase in the context of an innate immune response, a defense response mediated by germline encoded components that directly recognize components of potential pathogens.
Comment: This term was obsoleted because it should be represented as a GO-CAM model.
obsolete inactivation of MAPK activity involved in innate immune response (GO:0035423)
Namespace: biological_process
Definition: OBSOLETE. Any process that terminates the activity of the active enzyme MAP kinase in the context of an innate immune response, a defense response mediated by germline encoded components that directly recognize components of potential pathogens.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete MAPK import into nucleus involved in innate immune response (GO:0035424)
Namespace: biological_process
Definition: OBSOLETE. The directed movement of a MAP kinase to the nucleus in the context of an innate immune response, a defense response mediated by germline encoded components that directly recognize components of potential pathogens.
Synonyms: nuclear translocation of MAPK involved in innate immune response
Comment: The reason for obsoletion is that this term represents a GO-CAM model.
autocrine signaling (GO:0035425)
Namespace: biological_process
Definition: Signaling between cells of the same type. The signal produced by the signaling cell binds to a receptor on, and affects a cell of the same type.
Synonyms: autocrine signalling
extracellular matrix-cell signaling (GO:0035426)
Namespace: biological_process
Definition: Any process that mediates the transfer of information between the extracellular matrix and a cell.
Synonyms: cell-extracellular matrix signalling; extracellular matrix-cell signalling
gluconate transmembrane transport (GO:0035429)
Namespace: biological_process
Definition: The process in which gluconate is transported across a membrane. Gluconate is the aldonic acid derived from glucose.
Synonyms: gluconate membrane transport; gluconate transport
Comment: Note that this term is not intended for use in annotating lateral movement within membranes.
negative regulation of gluconate transmembrane transport (GO:0035431)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of gluconate across a membrane by means of some agent such as a transporter or pore.
Synonyms: down regulation of gluconate transport; down-regulation of gluconate transport; downregulation of gluconate transport; inhibition of gluconate transport; negative regulation of gluconate membrane transport; negative regulation of gluconate transport
positive regulation of gluconate transmembrane transport (GO:0035432)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of the directed movement of gluconate across a membrane by means of some agent such as a transporter or pore.
Synonyms: activation of gluconate transport; induction of gluconate transport; positive regulation of gluconate membrane transport; positive regulation of gluconate transport; stimulation of gluconate transport; up regulation of gluconate transport; up-regulation of gluconate transport; upregulation of gluconate transport
acetate transmembrane transport (GO:0035433)
Namespace: biological_process
Definition: The process in which acetate is transported across a membrane. Acetate is the 2-carbon carboxylic acid ethanoic acid.
Synonyms: acetate membrane transport
Comment: Note that this term is not intended for use in annotating lateral movement within membranes.
copper ion transmembrane transport (GO:0035434)
Namespace: biological_process
Definition: The directed movement of copper cation across a membrane.
Synonyms: copper cation transmembrane transport; copper ion membrane transport
Comment: Note that this term is not intended for use in annotating lateral movement within membranes.
phosphate ion transmembrane transport (GO:0035435)
Namespace: biological_process
Definition: The process in which a phosphate is transported across a membrane.
Synonyms: phosphate ion membrane transport
Comment: Note that this term is not intended for use in annotating lateral movement within membranes.
triose phosphate transmembrane transport (GO:0035436)
Namespace: biological_process
Definition: The process in which triose phosphate (glyceraldehyde 3-phosphate) is transported across a membrane. Glyceraldehyde 3-phosphate is any organic three carbon compound phosphate ester.
Synonyms: triose phosphate membrane transport
Comment: Note that this term is not intended for use in annotating lateral movement within membranes.
maintenance of protein localization in endoplasmic reticulum (GO:0035437)
Namespace: biological_process
Definition: Any process in which a protein is maintained in the endoplasmic reticulum and prevented from moving elsewhere. These include sequestration within the endoplasmic reticulum, protein stabilization to prevent transport elsewhere and the active retrieval of proteins that escape the endoplasmic reticulum.
Synonyms: maintenance of protein localisation in endoplasmic reticulum; maintenance of protein localization in ER; maintenance of protein location in endoplasmic reticulum; maintenance of protein location in ER; protein-endoplasmic reticulum retention; protein-ER retention; retention of protein in endoplasmic reticulum; retention of protein in ER
cyclic-di-GMP binding (GO:0035438)
Namespace: molecular_function
Definition: Binding to cyclic-di-GMP, cyclic dimeric guanosine monophosphate.
Synonyms: 3',5'-cyclic di-GMP binding; c-di-GMP binding; cyclic dinucleotide di-GMP binding
halimadienyl-diphosphate synthase activity (GO:0035439)
Namespace: molecular_function
Definition: Catalysis of the reaction: geranylgeranyl diphosphate = halima-5(6),13-dien-15-yl diphosphate.
Synonyms: halima-5(6),13-dien-15-yl-diphosphate lyase (cyclizing); halimadienyl diphosphate synthase activity
tuberculosinol biosynthetic process (GO:0035440)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of tuberculosinol (halima-5,6,dien-15-ol), a secondary metabolite in Mycobacteria.
Synonyms: halima-5,6,dien-15-ol biosynthesis; halima-5,6,dien-15-ol biosynthetic process; tuberculosinol biosynthesis
cell migration involved in vasculogenesis (GO:0035441)
Namespace: biological_process
Definition: The orderly movement of a cell from one site to another that will contribute to the differentiation of an endothelial cell that will form de novo blood vessels and tubes.
dipeptide transmembrane transport (GO:0035442)
Namespace: biological_process
Definition: The directed movement of a dipeptide across a membrane by means of some agent such as a transporter or pore. A dipeptide is a combination of two amino acids linked together by a peptide (-CO-NH-) bond.
Synonyms: dipeptide membrane transport
Comment: Note that this term is not intended for use in annotating lateral movement within membranes.
tripeptide transmembrane transport (GO:0035443)
Namespace: biological_process
Definition: The directed movement of a tripeptide across a membrane by means of some agent such as a transporter or pore. A tripeptide is a compound containing three amino acids linked together by peptide bonds.
Synonyms: tripeptide membrane transport
Comment: Note that this term is not intended for use in annotating lateral movement within membranes.
borate transmembrane transport (GO:0035445)
Namespace: biological_process
Definition: The process in which borate is transported across a membrane. Borate is the anion (BO3)3-; boron is a group 13 element, with properties which are borderline between metals and non-metals.
Synonyms: borate membrane transport; boron transmembrane transport
Comment: Note that this term is not intended for use in annotating lateral movement within membranes.
cysteine-glucosaminylinositol ligase activity (GO:0035446)
Namespace: molecular_function
Definition: Catalysis of the reaction: 1-(2-amino-2-deoxy-alpha-D-glucopyranoside)-1D-myo-inositol + L-cysteine + ATP = 1-D-myo-inosityl-2-L-cysteinylamido-2-deoxy-alpha-D-glucopyranoside + AMP + diphosphate + 2 H+. 1-(2-amino-2-deoxy-alpha-D-glucopyranoside)-1D-myo-inositol is also known as glucosaminyl-inositol or GlcN-Ins, and 1-D-myo-inosityl-2-L-cysteinylamido-2-deoxy-alpha-D-glucopyranoside as desacetylmycothiol or Cys-GlcN-Ins.
Synonyms: desacetylmycothiol synthase; L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase; MshC ligase
mycothiol synthase activity (GO:0035447)
Namespace: molecular_function
Definition: Catalysis of the reaction: 1D-myo-inositol-2-(L-cysteinylamido)-2-deoxy-alpha-D-glucopyranoside + acetyl-CoA = mycothiol + coA + H+. Mycothiol is also known as AcCys-GlcN-Ins and 1-D-myo-inosityl-2-L-cysteinylamido-2-deoxy-alpha-D-glucopyranoside as Cys-GlcN-Ins or desacetylmycothiol.
Synonyms: acetyl-CoA:Cys-GlcN-Ins acetyltransferase
extrinsic component of thylakoid membrane (GO:0035448)
Namespace: cellular_component
Definition: The component of a thylakoid membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.
Synonyms: extrinsic to thylakoid membrane; peripheral to thylakoid membrane
extrinsic component of plastid thylakoid membrane (GO:0035449)
Namespace: cellular_component
Definition: The component of a plastid thylakoid membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.
Synonyms: extrinsic to plastid thylakoid membrane; peripheral to plastid thylakoid membrane
extrinsic component of lumenal side of plastid thylakoid membrane (GO:0035450)
Namespace: cellular_component
Definition: The component of a plastid thylakoid membrane consisting of gene products and protein complexes that are loosely bound to its lumenal surface, but not integrated into the hydrophobic region.
Synonyms: extrinsic to lumenal leaflet of plastid thylakoid membrane; extrinsic to lumenal side of plastid thylakoid membrane; peripheral to lumenal side of plastid thylakoid membrane
extrinsic component of stromal side of plastid thylakoid membrane (GO:0035451)
Namespace: cellular_component
Definition: The component of a plastid thylakoid membrane consisting of gene products and protein complexes that are loosely bound to its stromal surface, but not integrated into the hydrophobic region.
Synonyms: extrinsic to stromal leaflet of plastid thylakoid membrane; extrinsic to stromal side of plastid thylakoid membrane; peripheral to stromal side of plastid thylakoid membrane
extrinsic component of plastid membrane (GO:0035452)
Namespace: cellular_component
Definition: The component of a plastid membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.
Synonyms: extrinsic to plastid membrane; peripheral to plastid membrane
extrinsic component of plastid inner membrane (GO:0035453)
Namespace: cellular_component
Definition: The component of a plastid inner membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.
Synonyms: extrinsic to plastid inner membrane; peripheral to plastid inner membrane
extrinsic component of stromal side of plastid inner membrane (GO:0035454)
Namespace: cellular_component
Definition: The component of a plastid inner membrane consisting of gene products and protein complexes that are loosely bound to its stromal surface, but not integrated into the hydrophobic region.
Synonyms: extrinsic to stromal leaflet of plastid inner membrane; extrinsic to stromal side of plastid inner membrane; peripheral to stromal side of plastid inner membrane
response to interferon-alpha (GO:0035455)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interferon-alpha stimulus. Interferon-alpha is a type I interferon.
Synonyms: response to interferon alfa-n1; response to interferon alfa-n3; response to leukocyte interferon; response to lymphoblast interferon; response to lymphoblastoid interferon
response to interferon-beta (GO:0035456)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interferon-beta stimulus. Interferon-beta is a type I interferon.
Synonyms: response to beta-1 interferon; response to fiblaferon; response to fibroblast interferon; response to interferon beta
cellular response to interferon-alpha (GO:0035457)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interferon-alpha stimulus. Interferon-alpha is a type I interferon.
Synonyms: cellular response to interferon alfa-n1; cellular response to interferon alfa-n3; cellular response to leukocyte interferon; cellular response to lymphoblast interferon; cellular response to lymphoblastoid interferon
cellular response to interferon-beta (GO:0035458)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interferon-beta stimulus. Interferon-beta is a type I interferon.
Synonyms: cellular response to beta-1 interferon; cellular response to fiblaferon; cellular response to fibroblast interferon
vesicle cargo loading (GO:0035459)
Namespace: biological_process
Definition: The formation of a macromolecular complex between the coat proteins and proteins and/or lipoproteins that are going to be transported by a vesicle.
Synonyms: cargo loading into vesicle; cargo selection
L-ascorbate 6-phosphate lactonase activity (GO:0035460)
Namespace: molecular_function
Definition: Catalysis of the reaction: L-ascorbate 6-phosphate + H2O = 3-keto-L-gulonate 6-phosphate.
vitamin transmembrane transport (GO:0035461)
Namespace: biological_process
Definition: The process in which a vitamin is transported across a membrane. A vitamin is one of a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body.
Synonyms: vitamin membrane transport
Comment: Note that this term is not intended for use in annotating lateral movement within membranes.
determination of left/right asymmetry in diencephalon (GO:0035462)
Namespace: biological_process
Definition: The establishment of the diencephalon with respect to the left and right halves.
obsolete transforming growth factor beta receptor signaling pathway involved in determination of left/right asymmetry (GO:0035463)
Namespace: biological_process
Definition: OBSOLETE. The series of molecular signals initiated by an extracellular ligand binding to a transforming growth factor beta receptor on the surface of a target cell, which contributes to determination of organismal asymmetry with respect to the left and right halves.
Synonyms: TGF-beta receptor signaling pathway involved in determination of left/right asymmetry; TGF-beta receptor signalling pathway involved in determination of left/right asymmetry; TGFbeta receptor signaling pathway involved in determination of left/right asymmetry; TGFbeta receptor signalling pathway involved in determination of left/right asymmetry; transforming growth factor beta receptor signalling pathway involved in determination of left/right asymmetry
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete regulation of transforming growth factor receptor beta signaling pathway involved in determination of left/right asymmetry (GO:0035464)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of activity of any TGF-beta receptor signaling pathway that is involved in the determination of organismal asymmetry with regard to its left and right halves.
Synonyms: regulation of TGF-beta receptor signaling pathway involved in determination of left/right asymmetry; regulation of TGF-beta receptor signalling pathway involved in determination of left/right asymmetry; regulation of TGFbeta receptor signaling pathway involved in determination of left/right asymmetry; regulation of TGFbeta receptor signalling pathway involved in determination of left/right asymmetry; regulation of transforming growth factor beta receptor signalling pathway involved in determination of left/right asymmetry
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete regulation of transforming growth factor beta receptor signaling pathway involved in determination of lateral mesoderm left/right asymmetry (GO:0035465)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of activity of any TGF-beta receptor signaling pathway that is involved in the determination of the lateral plate mesoderm with respect to its left and right halves.
Synonyms: regulation of TGF-beta receptor signaling pathway involved in determination of lateral mesoderm left/right asymmetry; regulation of TGF-beta receptor signalling pathway involved in determination of lateral mesoderm left/right asymmetry; regulation of TGFbeta receptor signaling pathway involved in determination of lateral mesoderm left/right asymmetry; regulation of TGFbeta receptor signalling pathway involved in determination of lateral mesoderm left/right asymmetry; regulation of transforming growth factor beta receptor signaling pathway involved in determination of lateral mesoderm left/right asymmetry; regulation of transforming growth factor beta receptor signalling pathway involved in determination of lateral mesoderm left/right asymmetry
Comment: This term was made obsolete because it describes regulation of the nodal signaling pathway. Nodal proteins are members of the TGF-beta superfamily, but are distinct from TGF-beta proteins themselves. TGF-beta proteins are not currently known to regulate left/right asymmetry in the lateral mesoderm.
determination of pancreatic left/right asymmetry (GO:0035469)
Namespace: biological_process
Definition: Determination of the asymmetric location of the pancreas with respect to the left and right halves of the organism.
positive regulation of vascular wound healing (GO:0035470)
Namespace: biological_process
Definition: Any process that increases the rate, frequency, or extent of blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels and contribute to the series of events that restore integrity to damaged vasculature.
choriogonadotropin hormone receptor activity (GO:0035472)
Namespace: molecular_function
Definition: Combining with the choriogonadotropin hormone to initiate a change in cell activity.
Synonyms: CG receptor activity; chorio-gonadotrophin receptor activity; chorionic gonadotropin hormone receptor
lipase binding (GO:0035473)
Namespace: molecular_function
Definition: Binding to a lipase.
selective angioblast sprouting (GO:0035474)
Namespace: biological_process
Definition: The segregation of angioblasts into discrete arterial and venous vessels from one common precursor vessel.
angioblast cell migration involved in selective angioblast sprouting (GO:0035475)
Namespace: biological_process
Definition: The directional migration of angioblast cells as part of selective angioblast sprouting, which results in angioblast segregation into arterial and venous populations.
angioblast cell migration (GO:0035476)
Namespace: biological_process
Definition: The orderly movement of angioblasts, cells involved in blood vessel morphogenesis.
regulation of angioblast cell migration involved in selective angioblast sprouting (GO:0035477)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of angioblast cell migration involved in selective angioblast sprouting.
chylomicron binding (GO:0035478)
Namespace: molecular_function
Definition: Binding to a chylomicron, a large lipoprotein particle (diameter 75-1200 nm) composed of a central core of triglycerides and cholesterol surrounded by a protein-phospholipid coating. The proteins include one molecule of apolipoprotein B-48 and may include a variety of apolipoproteins, including APOAs, APOCs and APOE.
angioblast cell migration from lateral mesoderm to midline (GO:0035479)
Namespace: biological_process
Definition: The directed movement of angioblasts from the lateral mesoderm to the midline which occurs as part of the formation of the early midline vasculature.
obsolete regulation of Notch signaling pathway involved in heart induction (GO:0035480)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of the series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell that contributes to heart induction.
Synonyms: regulation of Notch signalling pathway involved in heart induction
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete positive regulation of Notch signaling pathway involved in heart induction (GO:0035481)
Namespace: biological_process
Definition: OBSOLETE. Any process that activates or increases the frequency, rate or extent of the series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell that contributes to heart induction.
Synonyms: positive regulation of Notch signalling pathway involved in heart induction
Comment: This term was obsoleted because it represents a GO-CAM.
gastric motility (GO:0035482)
Namespace: biological_process
Definition: The spontaneous peristaltic movements of the stomach that aid in digestion, moving food through the stomach and out through the pyloric sphincter into the duodenum.
gastric emptying (GO:0035483)
Namespace: biological_process
Definition: The process in which the liquid and liquid-suspended solid contents of the stomach exit through the pylorus into the duodenum.
adenine/adenine mispair binding (GO:0035484)
Namespace: molecular_function
Definition: Binding to a double-stranded DNA region containing an A/A mispair.
Synonyms: A/A mispair binding
adenine/guanine mispair binding (GO:0035485)
Namespace: molecular_function
Definition: Binding to a double-stranded DNA region containing an A/G mispair.
Synonyms: A/G mispair binding; G/A mispair binding; guanine-adenine mispair binding
cytosine/cytosine mispair binding (GO:0035486)
Namespace: molecular_function
Definition: Binding to a double-stranded DNA region containing a C/C mispair.
Synonyms: C/C mispair binding
thymine/thymine mispair binding (GO:0035487)
Namespace: molecular_function
Definition: Binding to a double-stranded DNA region containing a T/T mispair.
Synonyms: T/T mispair binding
cytosine/thymine mispair binding (GO:0035488)
Namespace: molecular_function
Definition: Binding to a double-stranded DNA region containing a C/T mispair.
Synonyms: C/T mispair binding; T/C mispair binding; thymine/cytosine mispair binding
guanine/guanine mispair binding (GO:0035489)
Namespace: molecular_function
Definition: Binding to a double-stranded DNA region containing a G/G mispair.
Synonyms: G/G mispair binding
regulation of leukotriene production involved in inflammatory response (GO:0035490)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency or extent of the synthesis or release of any leukotriene following a stimulus as part of an inflammatory response.