LiteFold/GO huggingface dataset:
obsolete positive regulation of cyclodextrin metabolic process (GO:2000956)
Namespace: biological_process
Definition: OBSOLETE. Any process that activates or increases the frequency, rate or extent of cyclodextrin metabolic process.
Synonyms: positive regulation of cyclodextrin metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
regulation of cyclodextrin catabolic process (GO:2000957)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of cyclodextrin catabolic process.
Synonyms: regulation of cyclodextrin catabolism
negative regulation of cyclodextrin catabolic process (GO:2000958)
Namespace: biological_process
Definition: Any process that stops, prevents or reduces the frequency, rate or extent of cyclodextrin catabolic process.
Synonyms: negative regulation of cyclodextrin catabolism
positive regulation of cyclodextrin catabolic process (GO:2000959)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of cyclodextrin catabolic process.
Synonyms: positive regulation of cyclodextrin catabolism
obsolete regulation of cellooligosaccharide metabolic process (GO:2000960)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of cellooligosaccharide metabolic process.
Synonyms: regulation of cellooligosaccharide metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
obsolete negative regulation of cellooligosaccharide metabolic process (GO:2000961)
Namespace: biological_process
Definition: OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of cellooligosaccharide metabolic process.
Synonyms: negative regulation of cellooligosaccharide metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
obsolete positive regulation of cellooligosaccharide metabolic process (GO:2000962)
Namespace: biological_process
Definition: OBSOLETE. Any process that activates or increases the frequency, rate or extent of cellooligosaccharide metabolic process.
Synonyms: positive regulation of cellooligosaccharide metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
regulation of cellooligosaccharide catabolic process (GO:2000963)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of cellooligosaccharide catabolic process.
Synonyms: regulation of cellooligosaccharide catabolism
negative regulation of cellooligosaccharide catabolic process (GO:2000964)
Namespace: biological_process
Definition: Any process that stops, prevents or reduces the frequency, rate or extent of cellooligosaccharide catabolic process.
Synonyms: negative regulation of cellooligosaccharide catabolism
positive regulation of cellooligosaccharide catabolic process (GO:2000965)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of cellooligosaccharide catabolic process.
Synonyms: positive regulation of cellooligosaccharide catabolism
regulation of cell wall polysaccharide catabolic process (GO:2000966)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of cell wall polysaccharide catabolic process.
Synonyms: regulation of cell wall polysaccharide breakdown
negative regulation of cell wall polysaccharide catabolic process (GO:2000967)
Namespace: biological_process
Definition: Any process that stops, prevents or reduces the frequency, rate or extent of cell wall polysaccharide catabolic process.
Synonyms: negative regulation of cell wall polysaccharide breakdown
positive regulation of cell wall polysaccharide catabolic process (GO:2000968)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of cell wall polysaccharide catabolic process.
Synonyms: positive regulation of cell wall polysaccharide breakdown
positive regulation of AMPA receptor activity (GO:2000969)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of AMPA selective glutamate receptor activity.
Synonyms: positive regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity
regulation of detection of glucose (GO:2000970)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of detection of glucose.
Synonyms: regulation of glucose detection; regulation of glucose perception; regulation of glucose sensing
negative regulation of detection of glucose (GO:2000971)
Namespace: biological_process
Definition: Any process that stops, prevents or reduces the frequency, rate or extent of detection of glucose.
Synonyms: negative regulation of glucose detection; negative regulation of glucose perception; negative regulation of glucose sensing
positive regulation of detection of glucose (GO:2000972)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of detection of glucose.
Synonyms: positive regulation of glucose detection; positive regulation of glucose perception; positive regulation of glucose sensing
regulation of pro-B cell differentiation (GO:2000973)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of pro-B cell differentiation.
Synonyms: regulation of pro-B cell development; regulation of pro-B lymphocyte differentiation
negative regulation of pro-B cell differentiation (GO:2000974)
Namespace: biological_process
Definition: Any process that stops, prevents or reduces the frequency, rate or extent of pro-B cell differentiation.
Synonyms: negative regulation of pro-B cell development; negative regulation of pro-B lymphocyte differentiation
positive regulation of pro-B cell differentiation (GO:2000975)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of pro-B cell differentiation.
Synonyms: positive regulation of pro-B cell development; positive regulation of pro-B lymphocyte differentiation
obsolete regulation of transcription from RNA polymerase II promoter involved in detection of glucose (GO:2000976)
Namespace: biological_process
Definition: OBSOLETE. Any regulation of transcription from RNA polymerase II promoter that is involved in detection of glucose.
Synonyms: global transcription regulation from Pol II promoter involved in detection of glucose; global transcription regulation from Pol II promoter involved in glucose detection; global transcription regulation from Pol II promoter involved in glucose perception; global transcription regulation from Pol II promoter involved in glucose sensing; regulation of gene-specific transcription from RNA polymerase II promoter involved in detection of glucose; regulation of gene-specific transcription from RNA polymerase II promoter involved in glucose detection; regulation of gene-specific transcription from RNA polymerase II promoter involved in glucose perception; regulation of gene-specific transcription from RNA polymerase II promoter involved in glucose sensing; regulation of global transcription from Pol II promoter involved in detection of glucose; regulation of global transcription from Pol II promoter involved in glucose detection; regulation of global transcription from Pol II promoter involved in glucose perception; regulation of global transcription from Pol II promoter involved in glucose sensing; regulation of transcription from Pol II promoter involved in detection of glucose; regulation of transcription from Pol II promoter involved in glucose detection; regulation of transcription from Pol II promoter involved in glucose perception; regulation of transcription from Pol II promoter involved in glucose sensing; regulation of transcription from RNA polymerase II promoter involved in glucose detection; regulation of transcription from RNA polymerase II promoter involved in glucose perception; regulation of transcription from RNA polymerase II promoter involved in glucose sensing; regulation of transcription from RNA polymerase II promoter, global involved in detection of glucose; regulation of transcription from RNA polymerase II promoter, global involved in glucose detection; regulation of transcription from RNA polymerase II promoter, global involved in glucose perception; regulation of transcription from RNA polymerase II promoter, global involved in glucose sensing
Comment: This term was made obsolete is that in these terms the 'involved in' process is not truly involved_in (i.e. part_of) the process but instead is causally upstream of it. We advise replacing annotations to these terms with annotations + extensions using the causally_upstream_of relation e.g. P1234 regulation of gene expression [causally_upstream_of] extracellular matrix organization.
regulation of forebrain neuron differentiation (GO:2000977)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of forebrain neuron differentiation.
negative regulation of forebrain neuron differentiation (GO:2000978)
Namespace: biological_process
Definition: Any process that stops, prevents or reduces the frequency, rate or extent of forebrain neuron differentiation.
positive regulation of forebrain neuron differentiation (GO:2000979)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of forebrain neuron differentiation.
regulation of inner ear receptor cell differentiation (GO:2000980)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of inner ear receptor cell differentiation.
Synonyms: regulation of inner ear hair cell differentiation
negative regulation of inner ear receptor cell differentiation (GO:2000981)
Namespace: biological_process
Definition: Any process that stops, prevents or reduces the frequency, rate or extent of inner ear receptor cell differentiation.
Synonyms: negative regulation of inner ear hair cell differentiation
positive regulation of inner ear receptor cell differentiation (GO:2000982)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of inner ear receptor cell differentiation.
Synonyms: positive regulation of inner ear hair cell differentiation
regulation of ATP citrate synthase activity (GO:2000983)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of ATP citrate synthase activity.
Synonyms: regulation of acetyl-CoA:oxaloacetate acetyltransferase (isomerizing; ADP- phosphorylating) activity; regulation of acetyl-CoA:oxaloacetate acetyltransferase (isomerizing; ADP-phosphorylating); regulation of acetyl-CoA:oxaloacetate C-acetyltransferase [(pro-S)-carboxymethyl-forming, ADP-phosphorylating]; regulation of adenosine triphosphate citrate lyase activity; regulation of ATP citrate (pro-S)-lyase activity; regulation of ATP-citrate (pro-S)-lyase activity; regulation of ATP-citrate (pro-S-)-lyase activity; regulation of ATP-citric lyase activity; regulation of ATP:citrate oxaloacetate-lyase ((pro-S)-CH(2)COO(-)->acetyl-CoA) (ATP- dephosphorylating) activity; regulation of ATP:citrate oxaloacetate-lyase [(pro-S)-CH2COO-rightacetyl-CoA] (ATP-dephosphorylating); regulation of citrate cleavage enzyme activity; regulation of citrate-ATP lyase activity; regulation of citric cleavage enzyme activity
obsolete negative regulation of ATP citrate synthase activity (GO:2000984)
Namespace: biological_process
Definition: OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of ATP citrate synthase activity.
Synonyms: negative regulation of acetyl-CoA:oxaloacetate acetyltransferase (isomerizing; ADP- phosphorylating) activity; negative regulation of acetyl-CoA:oxaloacetate acetyltransferase (isomerizing; ADP-phosphorylating); negative regulation of acetyl-CoA:oxaloacetate C-acetyltransferase [(pro-S)-carboxymethyl-forming, ADP-phosphorylating]; negative regulation of adenosine triphosphate citrate lyase activity; negative regulation of ATP citrate (pro-S)-lyase activity; negative regulation of ATP-citrate (pro-S)-lyase activity; negative regulation of ATP-citrate (pro-S-)-lyase activity; negative regulation of ATP-citric lyase activity; negative regulation of ATP:citrate oxaloacetate-lyase ((pro-S)-CH(2)COO(-)->acetyl-CoA) (ATP- dephosphorylating) activity; negative regulation of ATP:citrate oxaloacetate-lyase [(pro-S)-CH2COO-rightacetyl-CoA] (ATP-dephosphorylating); negative regulation of citrate cleavage enzyme activity; negative regulation of citrate-ATP lyase activity; negative regulation of citric cleavage enzyme activity
Comment: This term was obsoleted because it represents a molecular function.
negative regulation of behavioral fear response (GO:2000986)
Namespace: biological_process
Definition: Any process that stops, prevents or reduces the frequency, rate or extent of behavioral fear response.
Synonyms: negative regulation of behavioural fear response
positive regulation of behavioral fear response (GO:2000987)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of behavioral fear response.
Synonyms: positive regulation of behavioural fear response
regulation of hemicellulose catabolic process (GO:2000988)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of hemicellulose catabolic process.
Synonyms: regulation of hemicellulose catabolism
negative regulation of hemicellulose catabolic process (GO:2000989)
Namespace: biological_process
Definition: Any process that stops, prevents or reduces the frequency, rate or extent of hemicellulose catabolic process.
Synonyms: negative regulation of hemicellulose catabolism
positive regulation of hemicellulose catabolic process (GO:2000990)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of hemicellulose catabolic process.
Synonyms: positive regulation of hemicellulose catabolism
regulation of galactomannan catabolic process (GO:2000991)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of galactomannan catabolic process.
negative regulation of galactomannan catabolic process (GO:2000992)
Namespace: biological_process
Definition: Any process that stops, prevents or reduces the frequency, rate or extent of galactomannan catabolic process.
positive regulation of galactomannan catabolic process (GO:2000993)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of galactomannan catabolic process.
regulation of mannan catabolic process (GO:2000994)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of mannan catabolic process.
Synonyms: regulation of mannan breakdown; regulation of mannan catabolism; regulation of mannan degradation
negative regulation of mannan catabolic process (GO:2000995)
Namespace: biological_process
Definition: Any process that stops, prevents or reduces the frequency, rate or extent of mannan catabolic process.
Synonyms: negative regulation of mannan breakdown; negative regulation of mannan catabolism; negative regulation of mannan degradation
positive regulation of mannan catabolic process (GO:2000996)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of mannan catabolic process.
Synonyms: positive regulation of mannan breakdown; positive regulation of mannan catabolism; positive regulation of mannan degradation
regulation of cellulose catabolic process (GO:2000997)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of cellulose catabolic process.
Synonyms: regulation of cellulose breakdown; regulation of cellulose catabolism; regulation of cellulose degradation
negative regulation of cellulose catabolic process (GO:2000998)
Namespace: biological_process
Definition: Any process that stops, prevents or reduces the frequency, rate or extent of cellulose catabolic process.
Synonyms: negative regulation of cellulose breakdown; negative regulation of cellulose catabolism; negative regulation of cellulose degradation
positive regulation of cellulose catabolic process (GO:2000999)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of cellulose catabolic process.
Synonyms: positive regulation of cellulose breakdown; positive regulation of cellulose catabolism; positive regulation of cellulose degradation
regulation of xylan catabolic process (GO:2001000)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of xylan catabolic process.
Synonyms: regulation of xylan breakdown; regulation of xylan catabolism; regulation of xylan degradation
negative regulation of xylan catabolic process (GO:2001001)
Namespace: biological_process
Definition: Any process that stops, prevents or reduces the frequency, rate or extent of xylan catabolic process.
Synonyms: negative regulation of xylan breakdown; negative regulation of xylan catabolism; negative regulation of xylan degradation
regulation of pectin catabolic process (GO:2001003)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of pectin catabolic process.
Synonyms: regulation of pectin breakdown; regulation of pectin catabolism; regulation of pectin degradation
negative regulation of pectin catabolic process (GO:2001004)
Namespace: biological_process
Definition: Any process that stops, prevents or reduces the frequency, rate or extent of pectin catabolic process.
Synonyms: negative regulation of pectin breakdown; negative regulation of pectin catabolism; negative regulation of pectin degradation
positive regulation of pectin catabolic process (GO:2001005)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of pectin catabolic process.
Synonyms: positive regulation of pectin breakdown; positive regulation of pectin catabolism; positive regulation of pectin degradation
regulation of cellulose biosynthetic process (GO:2001006)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of cellulose biosynthetic process.
Synonyms: regulation of cellulose anabolism; regulation of cellulose biosynthesis; regulation of cellulose formation; regulation of cellulose synthesis
negative regulation of cellulose biosynthetic process (GO:2001007)
Namespace: biological_process
Definition: Any process that stops, prevents or reduces the frequency, rate or extent of cellulose biosynthetic process.
Synonyms: negative regulation of cellulose anabolism; negative regulation of cellulose biosynthesis; negative regulation of cellulose formation; negative regulation of cellulose synthesis
regulation of plant-type cell wall cellulose biosynthetic process (GO:2001009)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of plant-type cell wall cellulose biosynthetic process.
Synonyms: regulation of cell wall cellulose biosynthesis; regulation of cellulose biosynthesis during cell wall biosynthesis
negative regulation of plant-type cell wall cellulose biosynthetic process (GO:2001010)
Namespace: biological_process
Definition: Any process that stops, prevents or reduces the frequency, rate or extent of plant-type cell wall cellulose biosynthetic process.
Synonyms: negative regulation of cell wall cellulose biosynthesis; negative regulation of cellulose biosynthesis during cell wall biosynthesis
positive regulation of plant-type cell wall cellulose biosynthetic process (GO:2001011)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of plant-type cell wall cellulose biosynthetic process.
Synonyms: positive regulation of cell wall cellulose biosynthesis; positive regulation of cellulose biosynthesis during cell wall biosynthesis
obsolete mesenchymal cell differentiation involved in renal system development (GO:2001012)
Namespace: biological_process
Definition: OBSOLETE. The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the mesenchymal cells of the renal system as it progresses from its formation to the mature state.
Synonyms: mesenchymal cell differentiation involved in urinary system development; mesenchymal cell differentiation involved in urinary tract development
Comment: This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.
epithelial cell proliferation involved in renal tubule morphogenesis (GO:2001013)
Namespace: biological_process
Definition: Any epithelial cell proliferation that is involved in renal tubule morphogenesis.
regulation of skeletal muscle cell differentiation (GO:2001014)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of skeletal muscle cell differentiation.
negative regulation of skeletal muscle cell differentiation (GO:2001015)
Namespace: biological_process
Definition: Any process that stops, prevents or reduces the frequency, rate or extent of skeletal muscle cell differentiation.
positive regulation of skeletal muscle cell differentiation (GO:2001016)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of skeletal muscle cell differentiation.
regulation of retrograde axon cargo transport (GO:2001017)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of retrograde axon cargo transport.
Synonyms: regulation of retrograde axonal transport
negative regulation of retrograde axon cargo transport (GO:2001018)
Namespace: biological_process
Definition: Any process that stops, prevents or reduces the frequency, rate or extent of retrograde axon cargo transport.
Synonyms: negative regulation of retrograde axonal transport
positive regulation of retrograde axon cargo transport (GO:2001019)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of retrograde axon cargo transport.
Synonyms: positive regulation of retrograde axonal transport
obsolete regulation of response to DNA damage stimulus (GO:2001020)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of response to DNA damage stimulus.
Synonyms: regulation of cellular DNA damage response; regulation of cellular response to DNA damage stimulus; regulation of DNA damage response; regulation of response to genotoxic stress
Comment: The reason for obsoletion is that the meaning of the term is ambiguous; genes annotated to these terms all seem to be part of the response.
obsolete negative regulation of response to DNA damage stimulus (GO:2001021)
Namespace: biological_process
Definition: OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of response to DNA damage stimulus.
Synonyms: negative regulation of cellular DNA damage response; negative regulation of cellular response to DNA damage stimulus; negative regulation of DNA damage response; negative regulation of response to genotoxic stress
Comment: The reason for obsoletion is that the meaning of the term is ambiguous; genes annotated to these terms all seem to be part of the response.