LiteFold/GO huggingface dataset:
mannitol catabolic process (GO:0019592)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of mannitol, the alditol derived from D-mannose by reduction of the aldehyde group.
Synonyms: mannitol breakdown; mannitol catabolism; mannitol degradation
mannitol biosynthetic process (GO:0019593)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of mannitol, the alditol derived from D-mannose by reduction of the aldehyde group.
Synonyms: mannitol anabolism; mannitol biosynthesis; mannitol formation; mannitol synthesis
mannitol metabolic process (GO:0019594)
Namespace: biological_process
Definition: The chemical reactions and pathways involving mannitol, the alditol derived from D-mannose by reduction of the aldehyde group.
Synonyms: mannitol metabolism
non-phosphorylated glucose catabolic process (GO:0019595)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of non-phosphorylated forms of glucose.
Synonyms: non-phosphorylated glucose breakdown; non-phosphorylated glucose catabolism; non-phosphorylated glucose degradation
mandelate catabolic process (GO:0019596)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of mandelate, the anion of mandelic acid. Mandelic acid (alpha-hydroxybenzeneacetic acid) is an 8-carbon alpha-hydroxy acid (AHA) that is used in organic chemistry and as a urinary antiseptic.
Synonyms: mandelate breakdown; mandelate catabolism; mandelate degradation
(R)-mandelate catabolic process to catechol (GO:0019598)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of (R)-mandelate into other compounds, including catechol.
Synonyms: (R)-mandelate breakdown to catechol; (R)-mandelate degradation to catechol
toluene oxidation (GO:0019600)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the loss of electrons from one or more atoms in toluene.
toluene oxidation via 2-hydroxytoluene (GO:0019601)
Namespace: biological_process
Definition: The degradation of toluene to form pyruvate and acetaldehyde; the first step in the pathway is the oxidation of toluene to form 2-hydroxytoluene (o-cresol).
toluene oxidation via 3-hydroxytoluene (GO:0019602)
Namespace: biological_process
Definition: The degradation of toluene to form pyruvate and acetaldehyde; the first step in the pathway is the oxidation of toluene to form 3-hydroxytoluene (m-cresol).
toluene oxidation via 4-hydroxytoluene (GO:0019603)
Namespace: biological_process
Definition: The degradation of toluene to form p-hydroxybenzoate; the first step in the pathway is the oxidation of toluene to form 4-hydroxytoluene (4-cresol).
butyrate metabolic process (GO:0019605)
Namespace: biological_process
Definition: The chemical reactions and pathways involving any butyrate, the anions of butyric acid (butanoic acid), a saturated, unbranched aliphatic acid.
Synonyms: butanoic acid metabolic process; butanoic acid metabolism; butyrate metabolism; butyric acid metabolic process; butyric acid metabolism
2-oxobutyrate catabolic process (GO:0019606)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of 2-oxobutyrate, the anion of the organic acid 2-oxobutyric acid, which contains a ketone group on carbon 2.
Synonyms: 2-oxobutyrate breakdown; 2-oxobutyrate catabolism; 2-oxobutyrate degradation; alpha-ketobutyrate catabolic process; alpha-ketobutyrate catabolism
phenylethylamine catabolic process (GO:0019607)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of phenylethylamine, an amine with pharmacological properties similar to those of amphetamine, occurs naturally as a neurotransmitter in the brain, and is present in chocolate and oil of bitter almonds.
Synonyms: phenylethylamine breakdown; phenylethylamine catabolism; phenylethylamine degradation
nicotine catabolic process (GO:0019608)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of nicotine, (S)(-)-3-(1-methyl-2-pyrrolidinyl)pyridine.
Synonyms: nicotine breakdown; nicotine catabolism; nicotine degradation
obsolete 3-hydroxyphenylacetate metabolic process (GO:0019609)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving 3-hydroxyphenylacetate, 1,3-benzenediol monoacetate, also known as resorcinol monoacetate.
Synonyms: 3-hydroxyphenylacetate metabolism; 3HPA metabolic process; 3HPA metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
3-hydroxyphenylacetate catabolic process (GO:0019610)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of 3-hydroxyphenylacetate, 1,3-benzenediol monoacetate, also known as resorcinol monoacetate.
Synonyms: 3-hydroxyphenylacetate breakdown; 3-hydroxyphenylacetate catabolism; 3-hydroxyphenylacetate degradation
4-toluenecarboxylate catabolic process (GO:0019612)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of 4-toluenecarboxylate, 4-methylbenzenecarboxylate, the anion of carboxylic acid attached to a methylbenzene molecule.
Synonyms: 4-toluenecarboxylate breakdown; 4-toluenecarboxylate catabolism; 4-toluenecarboxylate degradation; p-toluate catabolic process; p-toluate catabolism
catechol-containing compound catabolic process (GO:0019614)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of catechol-containing compounds. Catechol is a compound containing a pyrocatechol nucleus or substituent.
Synonyms: catechol breakdown; catechol catabolic process; catechol catabolism; catechol degradation
catechol catabolic process, ortho-cleavage (GO:0019615)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of catechol via the ortho-cleavage pathway, in which the catechol aromatic ring is broken between the two carbon atoms bearing hydroxyl groups.
Synonyms: catechol breakdown, ortho-cleavage; catechol degradation, ortho-cleavage
catechol catabolic process, meta-cleavage (GO:0019616)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of catechol via the meta-cleavage pathway, in which the catechol aromatic ring is broken between a hydroxylated carbon atom and an adjacent unsubstituted carbon atom.
Synonyms: catechol breakdown, meta-cleavage; catechol degradation, meta-cleavage
protocatechuate catabolic process, meta-cleavage (GO:0019617)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of protocatechuate, the anion of 3,4-dihydroxybenzoic acid, to yield oxaloacetate and pyruvate.
Synonyms: 3,4-dihydroxybenzoate catabolic process, meta-cleavage; protocatechuate breakdown, meta-cleavage; protocatechuate catabolic process to oxaloacetate and pyruvate; protocatechuate degradation, meta-cleavage
protocatechuate catabolic process, ortho-cleavage (GO:0019618)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of protocatechuate, the anion of 3,4-dihydroxybenzoic acid, to yield beta-ketoadipate.
Synonyms: 3,4-dihydroxybenzoate catabolic process, ortho-cleavage; protocatechuate breakdown, ortho-cleavage; protocatechuate catabolic process to beta-ketoadipate; protocatechuate degradation, ortho-cleavage
3,4-dihydroxybenzoate catabolic process (GO:0019619)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of 3,4-dihydroxybenzoate.
Synonyms: protocatechuate breakdown; protocatechuate catabolic process; protocatechuate catabolism; protocatechuate degradation
obsolete aerobic benzoate metabolic process (GO:0019620)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving benzoate, the anion of benzoic acid (benzenecarboxylic acid) that occur in the presence of oxygen.
Synonyms: aerobic benzoate metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
creatinine catabolic process to formate (GO:0019621)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of creatinine into other compounds, including formate.
Synonyms: creatinine breakdown to formate; creatinine degradation to formate
3-(3-hydroxy)phenylpropionate catabolic process (GO:0019622)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of 3-(3-hydroxy)phenylpropionate, a hydroxylated derivative of phenylpropionate.
Synonyms: 3-(3-hydroxy)phenylpropionate breakdown; 3-(3-hydroxy)phenylpropionate catabolism; 3-(3-hydroxy)phenylpropionate degradation
atrazine catabolic process to urea (GO:0019623)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of atrazine, a triazine ring-containing herbicide, into urea.
Synonyms: atrazine breakdown to urea; atrazine degradation to urea
atrazine catabolic process to isopropylamine (GO:0019624)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of atrazine, a triazine ring-containing herbicide, into isopropylamine.
Synonyms: atrazine breakdown to isopropylamine; atrazine degradation to isopropylamine
atrazine catabolic process to cyanuric acid (GO:0019625)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of atrazine, a triazine ring-containing herbicide, into cyanuric acid.
Synonyms: atrazine breakdown to cyanuric acid; atrazine degradation to cyanuric acid
short-chain fatty acid catabolic process (GO:0019626)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of a short-chain fatty acid. A short-chain fatty acid has an aliphatic tail containing fewer than 6 carbons.
Synonyms: short-chain fatty acid breakdown; short-chain fatty acid catabolism; short-chain fatty acid degradation
Comment: While there is not universal consensus on the lengths of short-, medium-, long- and very-long-chain fatty acids, the GO uses the definitions in ChEBI (see CHEBI:26666, CHEBI:59554, CHEBI:15904 and CHEBI:27283).
urea metabolic process (GO:0019627)
Namespace: biological_process
Definition: The chemical reactions and pathways involving urea, the water soluble compound O=C-(NH2)2.
Synonyms: urea metabolism
urate catabolic process (GO:0019628)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of urate, the anion of uric acid, 2,6,8-trioxypurine.
Synonyms: urate breakdown; urate catabolism; urate degradation; uric acid catabolic process
obsolete propionate catabolic process, 2-methylcitrate cycle (GO:0019629)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the breakdown of propionate that occurs in the 2-methylcitrate cycle.
Synonyms: propionate breakdown, 2-methylcitrate cycle; propionate degradation, 2-methylcitrate cycle
Comment: The reason for obsoletion is that the meaning of the term is too narrow.
obsolete quinate metabolic process (GO:0019630)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving quinate, the anion of quinic acid. The acid occurs commonly in plants, either free or as esters, and is used as a medicine.
Synonyms: quinate metabolism; quinic acid metabolic process; quinic acid metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
quinate catabolic process (GO:0019631)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of quinate, the anion of quinic acid.
Synonyms: quinate breakdown; quinate catabolism; quinate degradation; quinic acid catabolic process; quinic acid catabolism
shikimate metabolic process (GO:0019632)
Namespace: biological_process
Definition: The chemical reactions and pathways involving shikimate, (3R,4S,5R)--3,4,5-trihydroxycyclohex-1-ene-1-carboxylate, the anion of shikimic acid. It is an important intermediate in the biosynthesis of aromatic amino acids.
Synonyms: shikimate metabolism
shikimate catabolic process (GO:0019633)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of shikimate, (3R,4S,5R)--3,4,5-trihydroxycyclohex-1-ene-1-carboxylate, the anion of shikimic acid.
Synonyms: shikimate breakdown; shikimate catabolism; shikimate degradation
organic phosphonate metabolic process (GO:0019634)
Namespace: biological_process
Definition: The chemical reactions and pathways involving phosphonates, any organic compounds containing one or more C-PO(OH)2 or C-PO(OR)2 (with R=alkyl, aryl) groups. Metabolism of phosphonic acid itself, an inorganic compound without the biochemically relevant C-P bond, is not included.
Synonyms: organophosphonate metabolic process; phosphonate metabolism
2-aminoethylphosphonate catabolic process (GO:0019635)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of 2-aminoethylphosphonate, also known as ciliatine.
Synonyms: 2-aminoethylphosphonate breakdown; 2-aminoethylphosphonate catabolism; 2-aminoethylphosphonate degradation; 2-phosphonoethylamine catabolic process; 2-phosphonoethylamine catabolism; ciliatine catabolic process; ciliatine catabolism
phosphonoacetate metabolic process (GO:0019636)
Namespace: biological_process
Definition: The chemical reactions and pathways involving phosphonoacetate, C2H4PO5, a substance composed of an acetate and a phosphonic acid residue.
Synonyms: phosphonoacetate metabolism
obsolete 6-hydroxycineole metabolic process (GO:0019638)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving 6-hydroxycineole (6-hydroxy-1,8-epoxy-p-menthane), a hydrocarbon with the formula C10H18O2.
Synonyms: 6-endo-hydroxycineole metabolic process; 6-endo-hydroxycineole metabolism; 6-hydroxycineole metabolism; hydroxycineol metabolic process; hydroxycineol metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
6-hydroxycineole catabolic process (GO:0019639)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of 6-hydroxycineole (6-hydroxy-1,8-epoxy-p-menthane), a hydrocarbon with the formula C10H18O2.
Synonyms: 6-endo-hydroxycineole catabolic process; 6-endo-hydroxycineole catabolism; 6-hydroxycineole breakdown; 6-hydroxycineole catabolism; 6-hydroxycineole degradation; hydroxycineol catabolic process; hydroxycineol catabolism
D-glucuronate catabolic process to D-xylulose 5-phosphate (GO:0019640)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of D-glucuronate into D-xylulose 5-phosphate.
Synonyms: glucuronate breakdown to xylulose 5-phosphate; glucuronate catabolic process to xylulose 5-phosphate; glucuronate degradation to xylulose 5-phosphate
reductive tricarboxylic acid cycle (GO:0019643)
Namespace: biological_process
Definition: A pathway leading to the fixation of two molecules of CO2 and the production of one molecule of acetyl-CoA; essentially the oxidative TCA cycle running in reverse. Acetyl-CoA is reductively carboxylated to pyruvate, from which all other central metabolites can be formed. Most of the enzymes of reductive and oxidative TCA cycle are shared, with the exception of three key enzymes that allow the cycle to run in reverse: ATP citrate lyase, 2-oxoglutarate:ferredoxin oxidoreductase, and fumarate reductase. 2-oxoglutarate:ferredoxin oxidoreductase catalyzes the carboxylation of succinyl-CoA to 2-oxoglutarate, ATP citrate lyase the ATP-dependent cleavage of citrate to acetyl-CoA and oxaloacetate, and fumarate reductase the reduction of fumarate forming succinate.
Synonyms: reductive carboxylate cycle; reductive carboxylic acid cycle; reductive citric acid pathway; reductive Kreb's cycle; reductive TCA cycle
anaerobic electron transport chain (GO:0019645)
Namespace: biological_process
Definition: A process in which a series of electron carriers operate together to transfer electrons from donors such as NADH and FADH2 to any of several different terminal electron acceptors other than oxygen to generate a transmembrane electrochemical gradient.
aerobic electron transport chain (GO:0019646)
Namespace: biological_process
Definition: A process in which a series of electron carriers operate together to transfer electrons from donors such as NADH and FADH2 to oxygen to generate a transmembrane electrochemical gradient.
Synonyms: NADH-O2 electron transport; succinate-O2 electron transport; ubiquinone-8-O2 electron transport
formaldehyde assimilation via ribulose monophosphate cycle (GO:0019647)
Namespace: biological_process
Definition: The pathway in which formaldehyde is used as a carbon source in the ribulose monophosphate cycle. Methanotrophic bacteria produce formaldehyde from the oxidation of methane and methanol, and then assimilate it via the ribulose monophosphate cycle to form intermediates of the central metabolic routes that are subsequently used for biosynthesis of cell material. Three molecules of formaldehyde are assimilated, forming a three-carbon intermediate of central metabolism; in this pathway, all cellular carbon is assimilated at the oxidation level of formaldehyde.
Synonyms: formaldehyde assimilation via RuMP cycle; ribulose monophosphate cycle
formaldehyde assimilation via xylulose monophosphate cycle (GO:0019648)
Namespace: biological_process
Definition: The pathway in which formaldehyde is used as a carbon source in the xylulose monophosphate cycle. Methylotrophic yeasts, but not bacteria, utilize the xylulose monophosphate cycle to fix formaldehyde and convert it into metabolically useful organic compounds.
Synonyms: formaldehyde assimilation via xylulose-5-phosphate cycle; formaldehyde fixation cycle
formaldehyde assimilation (GO:0019649)
Namespace: biological_process
Definition: The pathways in which formaldehyde is processed and used as a carbon source for the cell.
obsolete pyruvate fermentation to butanediol (GO:0019650)
Namespace: biological_process
Definition: OBSOLETE. The anaerobic chemical reactions and pathways resulting in the breakdown of pyruvate into butanediol; effected by some members of the Enterobacteriaceae, e.g. Enterobacter, Erwinia, Klebsiella, and Serratia.
Synonyms: butanediol fermentation; glucose catabolic process to butanediol; glucose fermentation to butanediol; glycolytic fermentation to butanediol
Comment: The reason for obsoletion is that this term is equivalent to butanediol biosynthetic process.
citrate fermentation to diacetyl (GO:0019651)
Namespace: biological_process
Definition: The anaerobic chemical reactions and pathways resulting in the breakdown of citrate to diacetyl.
Synonyms: citrate catabolic process to diacetyl; diacetyl fermentation
obsolete L-alanine fermentation to propanoate and acetate (GO:0019652)
Namespace: biological_process
Definition: OBSOLETE. The anaerobic enzymatic conversion of L-alanine to acetate and propanoate.
Synonyms: acrylate pathway; nonrandomizing pathway; propionate fermentation
Comment: This term was obsoleted because it represents a variation of L-alanine fermentation; GO:0019667.
purine fermentation (GO:0019653)
Namespace: biological_process
Definition: The anaerobic chemical reactions and pathways resulting in the breakdown of purine nucleobases, yielding acetate and CO2.
Synonyms: anaerobic purine base catabolic process; anaerobic purine base catabolism; anaerobic purine catabolic process; anaerobic purine nucleobase catabolic process; purine base fermentation
pyruvate fermentation to ethanol (GO:0019655)
Namespace: biological_process
Definition: The anaerobic chemical reactions and pathways resulting in the breakdown of pyruvate into ethanol and carbon dioxide (CO2).
Synonyms: alcoholic fermentation; ethanol anabolism during fermentation; ethanol biosynthetic process involved in glucose fermentation to ethanol; ethanol fermentation; ethanol formation during fermentation; ethanol synthesis during fermentation; glucose catabolic process to ethanol; glucose fermentation to ethanol; glycolytic fermentation to ethanol
obsolete heterolactic fermentation (GO:0019656)
Namespace: biological_process
Definition: OBSOLETE. The anaerobic chemical reactions and pathways resulting in the enzymatic breakdown of D-glucose to D-lactate and ethanol, yielding energy in the form of adenosine triphosphate (ATP) at the rate of one ATP per glucose molecule.
Synonyms: glucose catabolic process to D-lactate and ethanol; glucose fermentation to D-lactate and ethanol; heterofermentation; heterofermentative lactate fermentation; heterofermentative pathway; heterolactate fermentation
Comment: The reason for obsoletion is that the term is not needed for fermentation process starting with pyruvate.
obsolete glucose catabolic process to lactate (GO:0019659)
Namespace: biological_process
Definition: OBSOLETE. The anaerobic enzymatic chemical reactions and pathways resulting in the breakdown of glucose to lactate, and possibly ethanol, yielding energy in the form of adenosine triphosphate (ATP).
Synonyms: glucose fermentation to lactate; lactate fermentation
Comment: The reason for obsoletion is that this term was an unnecessary grouping term.
pyruvate fermentation (GO:0019660)
Namespace: biological_process
Definition: The fermentation process resulting in the oxygen-independent conversion of pyruvate to reduced end products (e.g., lactate, ethanol, and acetate), accompanied by the concomitant oxidation of NADH to NAD.
Synonyms: glycolytic fermentation
obsolete homolactic fermentation (GO:0019661)
Namespace: biological_process
Definition: OBSOLETE. The anaerobic enzymatic chemical reactions and pathways resulting in the breakdown of glucose to lactate, via canonical glycolysis, yielding energy in the form of adenosine triphosphate (ATP).
Synonyms: glucose catabolic process to lactate via pyruvate; glucose fermentation to lactate via pyruvate; homofermentation; homofermentative lactate fermentation; homofermentative pathway; homolactate fermentation
Comment: The reason for obsoletion is that the term is not needed for fermentation process starting with pyruvate.
obsolete non-glycolytic fermentation (GO:0019662)
Namespace: biological_process
Definition: OBSOLETE. Fermentation that does not include the anaerobic conversion of glucose to pyruvate via the glycolytic pathway.
Comment: This term was obsoleted because it was defined negatively.
mixed acid fermentation (GO:0019664)
Namespace: biological_process
Definition: The anaerobic chemical reactions and pathways resulting in the breakdown of phosphoenolpyruvate into ethanol, lactate, formate, succinate, and acetate.
Synonyms: glucose catabolic process to mixed acids; glucose fermentation to mixed acids
obsolete nitrogenous compound fermentation (GO:0019666)
Namespace: biological_process
Definition: OBSOLETE. The anaerobic chemical reactions and pathways resulting in the breakdown of a nitrogen-containing compound, yielding energy in the form of ATP.
Synonyms: nitrogenous compound catabolic process
Comment: This term was obsoleted because it is an unnecessary grouping term.
L-alanine fermentation (GO:0019667)
Namespace: biological_process
Definition: The anaerobic chemical reactions and pathways resulting in the breakdown of L-alanine, yielding acetylCoA. AcetylCoA can be further converted to ATP.
Synonyms: anaerobic L-alanine catabolic process
glycine fermentation (GO:0019669)
Namespace: biological_process
Definition: The anaerobic chemical reactions and pathways resulting in the breakdown of glycine, yielding energy in the form of ATP.
Synonyms: anaerobic glycine catabolic process