LiteFold/GO huggingface dataset:
regulation of filopodium assembly (GO:0051489)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the assembly of a filopodium, a thin, stiff protrusion extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or an axonal growth cone.
Synonyms: regulation of filopodia biosynthesis; regulation of filopodia formation; regulation of filopodium formation
negative regulation of filopodium assembly (GO:0051490)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of the assembly of a filopodium, a thin, stiff protrusion extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or an axonal growth cone.
Synonyms: down regulation of filopodium formation; down-regulation of filopodium formation; downregulation of filopodium formation; inhibition of filopodium formation; negative regulation of filopodia biosynthesis; negative regulation of filopodia formation; negative regulation of filopodium formation
positive regulation of filopodium assembly (GO:0051491)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of the assembly of a filopodium, a thin, stiff protrusion extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or an axonal growth cone.
Synonyms: activation of filopodium formation; positive regulation of filopodia biosynthesis; positive regulation of filopodia formation; positive regulation of filopodium formation; stimulation of filopodium formation; up regulation of filopodium formation; up-regulation of filopodium formation; upregulation of filopodium formation
regulation of stress fiber assembly (GO:0051492)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the assembly of a stress fiber, a bundle of microfilaments and other proteins found in fibroblasts.
Synonyms: regulation of stress fibre biosynthesis; regulation of stress fibre formation
regulation of cytoskeleton organization (GO:0051493)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures.
Synonyms: regulation of cytoskeleton organisation; regulation of cytoskeleton organization and biogenesis
negative regulation of cytoskeleton organization (GO:0051494)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures.
Synonyms: down regulation of cytoskeleton organization; down-regulation of cytoskeleton organization; downregulation of cytoskeleton organization; inhibition of cytoskeleton organization; negative regulation of cytoskeleton organisation; negative regulation of cytoskeleton organization and biogenesis
positive regulation of cytoskeleton organization (GO:0051495)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures.
Synonyms: activation of cytoskeleton organization; positive regulation of cytoskeleton organisation; positive regulation of cytoskeleton organization and biogenesis; stimulation of cytoskeleton organization; up regulation of cytoskeleton organization; up-regulation of cytoskeleton organization; upregulation of cytoskeleton organization
positive regulation of stress fiber assembly (GO:0051496)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of the assembly of a stress fiber, a bundle of microfilaments and other proteins found in fibroblasts.
Synonyms: activation of stress fiber formation; positive regulation of stress fibre biosynthesis; positive regulation of stress fibre formation; stimulation of stress fiber formation; up regulation of stress fiber formation; up-regulation of stress fiber formation; upregulation of stress fiber formation
negative regulation of stress fiber assembly (GO:0051497)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of the assembly a stress fiber, a bundle of microfilaments and other proteins found in fibroblasts.
Synonyms: down regulation of stress fiber formation; down-regulation of stress fiber formation; downregulation of stress fiber formation; inhibition of stress fiber formation; negative regulation of stress fibre biosynthesis; negative regulation of stress fibre formation
syn-copalyl diphosphate synthase activity (GO:0051498)
Namespace: molecular_function
Definition: Catalysis of the reaction: geranylgeranyl diphosphate = 9alpha-copalyl diphosphate.
Synonyms: diterpene cyclase activity
D-aminoacyl-tRNA deacylase activity (GO:0051499)
Namespace: molecular_function
Definition: Catalysis of the reaction: a D-aminoacyl-tRNA + H2O = a D-alpha-amino acid + a tRNA + H+.  Removal of a D-amino acid from a charged tRNA.
D-tyrosyl-tRNA(Tyr) deacylase activity (GO:0051500)
Namespace: molecular_function
Definition: Catalysis of the reaction: D-tyrosyl-tRNATyr + H2O = D-tyrosine + tRNATyr. Removal of a D-tyrosine from a charged tRNA(Tyr).
obsolete diterpene phytoalexin metabolic process (GO:0051501)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving diterpene phytoalexins, a class of diterpene formed in plants in response to fungal infection, physical damage, chemical injury, or a pathogenic process; they are sometimes referred to as plant antibiotics. Diterpenes are unsaturated hydrocarbons containing 20 carbon atoms and 4 branched methyl groups and are made up of isoprenoid units.
Synonyms: diterpene phytoalexin metabolism
Comment: This term was obsoleted because it is an unnecessary grouping term.
diterpene phytoalexin biosynthetic process (GO:0051502)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of diterpene phytoalexins, terpenoids with 20 carbons produced by plants in response to environmental stresses.
Synonyms: diterpene phytoalexin anabolism; diterpene phytoalexin biosynthesis; diterpene phytoalexin formation; diterpene phytoalexin synthesis
adenine nucleotide transport (GO:0051503)
Namespace: biological_process
Definition: The directed movement of adenine nucleotides, ATP, ADP, and/or AMP, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
diterpene phytoalexin precursor biosynthetic process (GO:0051504)
Namespace: biological_process
Definition: A branched pathway that produces the precursors to four structurally distinct types of polycyclic diterpenes. The pathway starts with the cyclization of geranylgeranyl diphosphate into ent-copalyl diphosphate and syn-copalyl diphosphate. The catalytic conversion by diterpene cyclases of these two compounds produces the four diterpene hydrocarbons which are precursors to the four structurally distinct classes of diterpene phytoalexins.
Synonyms: diterpene phytoalexin precursor anabolism pathway; diterpene phytoalexin precursor formation pathway; diterpene phytoalexin precursor synthesis pathway
obsolete beta-sitosterol UDP-glucosyltransferase activity (GO:0051507)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: UDP-glucose + a beta-sitosterol = UDP + O-glucosyl-beta-sitosterol.
Comment: This term was obsoleted because it represents a specific substrate of sterol 3-beta-glucosyltransferase activity ; GO:0016906.
obsolete stigmasterol UDP-glucosyltransferase activity (GO:0051508)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: UDP-glucose + stigmasterol = UDP + O-glucosyl-stigmasterol.
Comment: This term was obsoleted because it represents a specific substrate of sterol 3-beta-glucosyltransferase activity ; GO:0016906.
obsolete tomatidine UDP-glucosyltransferase activity (GO:0051509)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: UDP-glucose + tomatidine = UDP + O-glucosyl-tomatidine.
Comment: This term was obsoleted because it represents a specific substrate of sterol 3-beta-glucosyltransferase activity ; GO:0016906.
regulation of unidimensional cell growth (GO:0051510)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of unidimensional cell growth, the process in which a cell irreversibly increases in size in one [spatial] dimension or along one axis.
Synonyms: regulation of cell elongation
negative regulation of unidimensional cell growth (GO:0051511)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of unidimensional cell growth, the process in which a cell irreversibly increases in size in one [spatial] dimension or along one axis.
Synonyms: down regulation of unidimensional cell growth; down-regulation of unidimensional cell growth; downregulation of unidimensional cell growth; inhibition of unidimensional cell growth; negative regulation of cell elongation
positive regulation of unidimensional cell growth (GO:0051512)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of unidimensional cell growth, the process in which a cell irreversibly increases in size in one [spatial] dimension or along one axis.
Synonyms: activation of unidimensional cell growth; positive regulation of cell elongation; stimulation of unidimensional cell growth; up regulation of unidimensional cell growth; up-regulation of unidimensional cell growth; upregulation of unidimensional cell growth
regulation of monopolar cell growth (GO:0051513)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of monopolar cell growth, polarized growth from one end of a cell.
negative regulation of monopolar cell growth (GO:0051514)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of monopolar cell growth, polarized growth from one end of a cell.
Synonyms: down regulation of monopolar cell growth; down-regulation of monopolar cell growth; downregulation of monopolar cell growth; inhibition of monopolar cell growth
positive regulation of monopolar cell growth (GO:0051515)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of monopolar cell growth, polarized growth from one end of a cell.
Synonyms: stimulation of monopolar cell growth; up regulation of monopolar cell growth; up-regulation of monopolar cell growth; upregulation of monopolar cell growth
regulation of bipolar cell growth (GO:0051516)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of bipolar cell growth, polarized growth from both ends of a cell.
negative regulation of bipolar cell growth (GO:0051517)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of bipolar cell growth, polarized growth from both ends of a cell.
Synonyms: down regulation of bipolar cell growth; down-regulation of bipolar cell growth; downregulation of bipolar cell growth; inhibition of bipolar cell growth
positive regulation of bipolar cell growth (GO:0051518)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of bipolar cell growth, polarized growth from both ends of a cell.
Synonyms: stimulation of bipolar cell growth; up regulation of bipolar cell growth; up-regulation of bipolar cell growth; upregulation of bipolar cell growth
activation of bipolar cell growth (GO:0051519)
Namespace: biological_process
Definition: Any process that initiates the inactive process of bipolar cell growth, polarized growth from both ends of a cell.
termination of bipolar cell growth (GO:0051520)
Namespace: biological_process
Definition: Any process that stops the active process of bipolar cell growth, polarized growth from both ends of a cell.
termination of monopolar cell growth (GO:0051521)
Namespace: biological_process
Definition: Any process that stops the active process of bipolar cell growth, polarized growth from one end of a cell.
activation of monopolar cell growth (GO:0051522)
Namespace: biological_process
Definition: Any process that initiates the inactive process of monopolar cell growth, polarized growth from one end of a cell.
cell growth mode switching, monopolar to bipolar (GO:0051523)
Namespace: biological_process
Definition: The process in which a cell switches from monopolar cell growth to bipolar cell growth.
Synonyms: NETO; new end take off
cell growth mode switching, bipolar to monopolar (GO:0051524)
Namespace: biological_process
Definition: The process in which a cell switches from bipolar cell growth to monopolar cell growth.
NFAT protein binding (GO:0051525)
Namespace: molecular_function
Definition: Binding to NFAT (nuclear factor of activated T cells) proteins, a family of transcription factors. NFAT proteins have crucial roles in the development and function of the immune system.
Synonyms: NFAT binding; NFAT1 protein binding; NFAT2 protein binding; NFAT3 protein binding; NFAT4 protein binding; NFAT5 protein binding; NFATc binding; NFATc1 binding; NFATc2 binding; NFATc3 binding; NFATc4 binding; NFATp binding; NFATx binding; non-calcium-regulated NFAT protein binding; nuclear factor of activated T cell protein binding
iron-sulfur cluster binding (GO:0051536)
Namespace: molecular_function
Definition: Binding to an iron-sulfur cluster, a combination of iron and sulfur atoms.
Synonyms: Fe/S binding; iron sulfur cluster binding; iron sulphur cluster binding; iron-sulphur cluster binding
2 iron, 2 sulfur cluster binding (GO:0051537)
Namespace: molecular_function
Definition: Binding to a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands.
Synonyms: 2 Fe 2 S cluster binding; 2 iron, 2 sulphur cluster binding; 2Fe-2S cluster binding; diiron disulfide cluster binding; diiron disulphide cluster binding; iron-sulfur cluster 2Fe-2S binding; iron-sulphur cluster 2Fe-2S binding
4 iron, 4 sulfur cluster binding (GO:0051539)
Namespace: molecular_function
Definition: Binding to a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands.
Synonyms: 4 Fe 4 S cluster binding; 4 iron, 4 sulphur cluster binding; 4Fe-4S cluster binding; iron-sulfur cluster 4Fe-4S binding; iron-sulphur cluster 4Fe-4S binding; tetrairon tetrasulfide cluster binding; tetrairon tetrasulphide cluster binding
metal cluster binding (GO:0051540)
Namespace: molecular_function
Definition: Binding to a cluster of atoms including both metal ions and nonmetal atoms, usually sulfur and oxygen. Examples include iron-sulfur clusters and nickel-iron-sulfur clusters.
obsolete elastin biosynthetic process (GO:0051542)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of elastin, a fibrous glycoprotein found in elastic tissues such as the walls of arteries.
Comment: The reason for obsoletion is that this term represents a gene product.
obsolete regulation of elastin biosynthetic process (GO:0051543)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of elastin.
Comment: The reason for obsoletion is that this term represents a gene product.
obsolete positive regulation of elastin biosynthetic process (GO:0051544)
Namespace: biological_process
Definition: OBSOLETE. Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of elastin.
Synonyms: activation of elastin biosynthetic process; stimulation of elastin biosynthetic process; up regulation of elastin biosynthetic process; up-regulation of elastin biosynthetic process; upregulation of elastin biosynthetic process
Comment: The reason for obsoletion is that this term represents a gene product.
obsolete negative regulation of elastin biosynthetic process (GO:0051545)
Namespace: biological_process
Definition: OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of elastin.
Synonyms: down regulation of elastin biosynthetic process; down-regulation of elastin biosynthetic process; downregulation of elastin biosynthetic process; inhibition of elastin biosynthetic process
Comment: The reason for obsoletion is that this term represents a gene product.
keratinocyte migration (GO:0051546)
Namespace: biological_process
Definition: The directed movement of a keratinocyte, epidermal cells which synthesize keratin, from one site to another.
regulation of keratinocyte migration (GO:0051547)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of keratinocyte migration.
negative regulation of keratinocyte migration (GO:0051548)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of keratinocyte migration.
Synonyms: down regulation of keratinocyte migration; down-regulation of keratinocyte migration; downregulation of keratinocyte migration; inhibition of keratinocyte migration
positive regulation of keratinocyte migration (GO:0051549)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of keratinocyte migration.
Synonyms: activation of keratinocyte migration; stimulation of keratinocyte migration; up regulation of keratinocyte migration; up-regulation of keratinocyte migration; upregulation of keratinocyte migration
obsolete aurone metabolic process (GO:0051550)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving aurones, a series of plant flavonoids that provide a yellow colour to flowers. They have the basic skeletal structure of two benzene rings joined by a linear C3 chain (C6-C3-C6). Aurones exist mostly as 6-O-glucosides.
Synonyms: aurone metabolism; benzalcoumaran-3-one metabolic process; benzalcoumaran-3-one metabolism
Comment: This term was obsoleted because it is an unnecessary grouping term.
aurone biosynthetic process (GO:0051551)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of aurones, a series of yellow plant pigments.
Synonyms: benzalcoumaran-3-one biosynthesis; benzalcoumaran-3-one biosynthetic process
flavone metabolic process (GO:0051552)
Namespace: biological_process
Definition: The chemical reactions and pathways involving flavones, a class of pigmented plant compounds based on 2-phenyl-4H-1-benzopyran-4-one (2-phenylchromone).
Synonyms: 2-phenyl-4H-1-benzopyran-4-one metabolic process; 2-phenyl-4H-1-benzopyran-4-one metabolism; 2-phenylchromone metabolic process; 2-phenylchromone metabolism; flavone metabolism
flavone biosynthetic process (GO:0051553)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of flavones, a class of pigmented plant compounds based on 2-phenyl-4H-1-benzopyran-4-one (2-phenylchromone).
Synonyms: 2-phenyl-4H-1-benzopyran-4-one biosynthesis; 2-phenyl-4H-1-benzopyran-4-one biosynthetic process; 2-phenylchromone biosynthesis; 2-phenylchromone biosynthetic process
flavonol metabolic process (GO:0051554)
Namespace: biological_process
Definition: The chemical reactions and pathways involving flavonols, a member of a class of vascular pigments formed by consecutive oxidative processes from the flavonoid intermediates flavanones and dihydroflavonols. Flavonols are the most widespread of the flavonoids and have a wide array of physiological activities.
Synonyms: flavonol metabolism
obsolete leucoanthocyanidin biosynthetic process (GO:0051557)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of leucoanthocyanidins, a class of colorless intermediates in the biosynthetic pathway of the pigmented flavonoids.
Comment: This term was obsoleted because it is an unnecessary grouping term.
obsolete phlobaphene metabolic process (GO:0051558)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving phlobaphenes, red pigments with oligomeric or polymeric structure derived from the flavonoid intermediate flavan-4-ols.
Synonyms: phlobaphene metabolism
Comment: This term was obsoleted because it is an unnecessary grouping term.
phlobaphene biosynthetic process (GO:0051559)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of phlobaphenes, red pigments with oligomeric or polymeric structure derived from the flavonoid intermediate flavan-4-ols.
mitochondrial calcium ion homeostasis (GO:0051560)
Namespace: biological_process
Definition: Any process involved in the maintenance of an internal steady state of calcium ions within the cytoplasm of a cell or between mitochondria and their surroundings.
Synonyms: calcium ion homeostasis in mitochondria; calcium ion homeostasis in mitochondrion; mitochondrial calcium ion concentration regulation; regulation of calcium ion concentration in mitochondria; regulation of calcium ion concentration in mitochondrion; regulation of mitochondrial calcium ion concentration
positive regulation of mitochondrial calcium ion concentration (GO:0051561)
Namespace: biological_process
Definition: Any process that increases the concentration of calcium ions in mitochondria.
Synonyms: elevation of calcium ion concentration in mitochondria; elevation of calcium ion concentration in mitochondrion; elevation of mitochondrial calcium ion concentration; mitochondrial calcium ion concentration elevation
negative regulation of mitochondrial calcium ion concentration (GO:0051562)
Namespace: biological_process
Definition: Any process that decreases the concentration of calcium ions in mitochondria.
Synonyms: mitochondrial calcium ion concentration reduction; reduction of calcium ion concentration in mitochondria; reduction of calcium ion concentration in mitochondrion; reduction of mitochondrial calcium ion concentration
smooth endoplasmic reticulum calcium ion homeostasis (GO:0051563)
Namespace: biological_process
Definition: Any process involved in the maintenance of an internal steady state of calcium ions within the smooth endoplasmic reticulum of a cell or between the smooth endoplasmic reticulum and its surroundings.
Synonyms: calcium ion homeostasis in smooth endoplasmic reticulum; calcium ion homeostasis in smooth ER; regulation of calcium ion concentration in smooth endoplasmic reticulum; regulation of calcium ion concentration in smooth ER; regulation of smooth endoplasmic reticulum calcium ion concentration; regulation of smooth ER calcium ion concentration; smooth endoplasmic reticulum calcium ion concentration regulation; smooth ER calcium ion concentration regulation; smooth ER calcium ion homeostasis
positive regulation of smooth endoplasmic reticulum calcium ion concentration (GO:0051564)
Namespace: biological_process
Definition: Any process that increases the concentration of calcium ions in the smooth endoplasmic reticulum.
Synonyms: elevation of calcium ion concentration in smooth endoplasmic reticulum; elevation of smooth endoplasmic reticulum calcium ion concentration; elevation of smooth ER calcium ion concentration; smooth endoplasmic reticulum calcium ion concentration elevation