LiteFold/GO huggingface dataset:
pyrimidine deoxyribonucleoside biosynthetic process (GO:0046126)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of any one of a family of organic molecules consisting of a pyrimidine base covalently bonded to a sugar deoxyribose (a deoxyribonucleoside).
Synonyms: pyrimidine deoxyribonucleoside anabolism; pyrimidine deoxyribonucleoside biosynthesis; pyrimidine deoxyribonucleoside formation; pyrimidine deoxyribonucleoside synthesis
pyrimidine deoxyribonucleoside catabolic process (GO:0046127)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of any one of a family of organic molecules consisting of a pyrimidine base covalently bonded to a sugar deoxyribose (a deoxyribonucleoside).
Synonyms: pyrimidine deoxyribonucleoside breakdown; pyrimidine deoxyribonucleoside catabolism; pyrimidine deoxyribonucleoside degradation
purine ribonucleoside metabolic process (GO:0046128)
Namespace: biological_process
Definition: The chemical reactions and pathways involving any ribonucleoside, a nucleoside in which purine base is linked to a ribose (beta-D-ribofuranose) molecule.
Synonyms: purine ribonucleoside metabolism
purine ribonucleoside biosynthetic process (GO:0046129)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of any purine ribonucleoside, a nucleoside in which purine base is linked to a ribose (beta-D-ribofuranose) molecule.
Synonyms: purine ribonucleoside anabolism; purine ribonucleoside biosynthesis; purine ribonucleoside formation; purine ribonucleoside synthesis
purine ribonucleoside catabolic process (GO:0046130)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of any purine ribonucleoside, a nucleoside in which purine base is linked to a ribose (beta-D-ribofuranose) molecule.
Synonyms: purine ribonucleoside breakdown; purine ribonucleoside catabolism; purine ribonucleoside degradation
pyrimidine ribonucleoside metabolic process (GO:0046131)
Namespace: biological_process
Definition: The chemical reactions and pathways involving any ribonucleoside, a nucleoside in which pyrimidine base is linked to a ribose (beta-D-ribofuranose) molecule.
Synonyms: pyrimidine ribonucleoside metabolism
pyrimidine ribonucleoside biosynthetic process (GO:0046132)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of any ribonucleoside, a nucleoside in which a pyrimidine base is linked to a ribose (beta-D-ribofuranose) molecule.
Synonyms: pyrimidine ribonucleoside anabolism; pyrimidine ribonucleoside biosynthesis; pyrimidine ribonucleoside formation; pyrimidine ribonucleoside synthesis
pyrimidine ribonucleoside catabolic process (GO:0046133)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of any ribonucleoside, a nucleoside in which a pyrimidine base is linked to a ribose (beta-D-ribofuranose) molecule.
Synonyms: pyrimidine ribonucleoside breakdown; pyrimidine ribonucleoside catabolism; pyrimidine ribonucleoside degradation
pyrimidine nucleoside biosynthetic process (GO:0046134)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of one of a family of organic molecules consisting of a pyrimidine base covalently bonded to a sugar ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside).
Synonyms: pyrimidine nucleoside anabolism; pyrimidine nucleoside biosynthesis; pyrimidine nucleoside formation; pyrimidine nucleoside synthesis
pyrimidine nucleoside catabolic process (GO:0046135)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of one of a family of organic molecules consisting of a pyrimidine base covalently bonded to a sugar ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside).
Synonyms: pyrimidine nucleoside breakdown; pyrimidine nucleoside catabolism; pyrimidine nucleoside degradation
positive regulation of vitamin metabolic process (GO:0046136)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving a vitamin, one of a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body.
Synonyms: activation of vitamin metabolic process; positive regulation of vitamin metabolism; stimulation of vitamin metabolic process; up regulation of vitamin metabolic process; up-regulation of vitamin metabolic process; upregulation of vitamin metabolic process
negative regulation of vitamin metabolic process (GO:0046137)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving a vitamin, one of a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body.
Synonyms: down regulation of vitamin metabolic process; down-regulation of vitamin metabolic process; downregulation of vitamin metabolic process; inhibition of vitamin metabolic process; negative regulation of vitamin metabolism
obsolete coenzyme and prosthetic group biosynthetic process (GO:0046138)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of coenzymes and prosthetic groups.
Synonyms: coenzyme and prosthetic group anabolism; coenzyme and prosthetic group biosynthesis; coenzyme and prosthetic group biosynthetic process; coenzyme and prosthetic group formation; coenzyme and prosthetic group synthesis
Comment: This term was made obsolete because it was replaced by more specific terms.
obsolete coenzyme and prosthetic group catabolic process (GO:0046139)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the breakdown of coenzymes and prosthetic groups.
Synonyms: coenzyme and prosthetic group breakdown; coenzyme and prosthetic group catabolic process; coenzyme and prosthetic group catabolism; coenzyme and prosthetic group degradation
Comment: This term was made obsolete because it was replaced by more specific terms.
corrin biosynthetic process (GO:0046140)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of corrin, C19H22N4, the fundamental heterocyclic skeleton of the corrinoids. It consists of four reduced pyrrole rings joined into a macrocyclic ring. Corrin is the core of the vitamin B12 molecule.
Synonyms: corrin anabolism; corrin biosynthesis; corrin formation; corrin synthesis
corrin catabolic process (GO:0046141)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of corrin, C19H22N4, the fundamental heterocyclic skeleton of the corrinoids. It consists of four reduced pyrrole rings joined into a macrocyclic ring. Corrin is the core of the vitamin B12 molecule.
Synonyms: corrin breakdown; corrin catabolism; corrin degradation
obsolete negative regulation of coenzyme and prosthetic group metabolic process (GO:0046142)
Namespace: biological_process
Definition: OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving coenzymes and prosthetic groups.
Synonyms: negative regulation of coenzyme and prosthetic group metabolic process
Comment: This term was made obsolete because it was replaced by more specific terms.
obsolete positive regulation of coenzyme and prosthetic group metabolic process (GO:0046143)
Namespace: biological_process
Definition: OBSOLETE. Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving coenzymes and prosthetic groups.
Synonyms: positive regulation of coenzyme and prosthetic group metabolic process
Comment: This term was made obsolete because it was replaced by more specific terms.
obsolete D-alanine family amino acid metabolic process (GO:0046144)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving D-alanine and related amino acids.
Synonyms: D-alanine family amino acid metabolism
Comment: This term was obsoleted because it represents an unnecessary grouping class.
tetrahydrobiopterin metabolic process (GO:0046146)
Namespace: biological_process
Definition: The chemical reactions and pathways involving tetrahydrobiopterin, the reduced form of biopterin (2-amino-4-hydroxy-6-(1,2-dihydroxypropyl)-pteridine). It functions as a hydroxylation coenzyme, e.g. in the conversion of phenylalanine to tyrosine.
Synonyms: 5,6,7,8-tetrahydrobiopterin metabolic process; tetrahydrobiopterin metabolism
pigment biosynthetic process (GO:0046148)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of a pigment, any general or particular coloring matter in living organisms, e.g. melanin.
Synonyms: pigment anabolism; pigment biosynthesis; pigment formation; pigment synthesis
pigment catabolic process (GO:0046149)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of a pigment, any general or particular coloring matter in living organisms, e.g. melanin.
Synonyms: pigment breakdown; pigment catabolism; pigment degradation
eye pigment catabolic process (GO:0046151)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of eye pigments, any general or particular coloring matter in living organisms, found or utilized in the eye.
Synonyms: eye pigment breakdown; eye pigment catabolism; eye pigment degradation
ommochrome metabolic process (GO:0046152)
Namespace: biological_process
Definition: The chemical reactions and pathways involving ommochromes, any of a large group of natural polycyclic pigments commonly found in the Arthropoda, particularly in the ommatidia of the compound eye.
Synonyms: ommochrome metabolism
rhodopsin catabolic process (GO:0046155)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of rhodopsin, a brilliant purplish-red, light-sensitive visual pigment found in the rod cells of the retinas.
Synonyms: rhodopsin breakdown; rhodopsin catabolism; rhodopsin degradation
obsolete siroheme metabolic process (GO:0046156)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving siroheme, a tetrahydroporphyrin with adjacent, reduced pyrrole rings.
Synonyms: sirohaem metabolic process; sirohaem metabolism; siroheme metabolism
Comment: This term was obsoleted because it is an unnecessary grouping term.
siroheme catabolic process (GO:0046157)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of siroheme, a tetrahydroporphyrin with adjacent, reduced pyrrole rings.
Synonyms: sirohaem catabolic process; sirohaem catabolism; siroheme breakdown; siroheme catabolism; siroheme degradation
ocellus pigment metabolic process (GO:0046158)
Namespace: biological_process
Definition: The chemical reactions and pathways involving ocellus pigments, any general or particular coloring matter in living organisms, found or utilized in the ocellus, a minute simple eye found in many invertebrates.
Synonyms: ocellus pigment metabolism
obsolete heme a metabolic process (GO:0046160)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving heme a, a derivative of heme found in cytochrome aa3.
Synonyms: haem a metabolic process; haem a metabolism; heme a metabolism
Comment: This term was obsoleted because it is an unnecessary grouping term.
heme a catabolic process (GO:0046161)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of heme a, a derivative of heme found in cytochrome aa3.
Synonyms: haem a catabolic process; haem a catabolism; heme a breakdown; heme a catabolism; heme a degradation
obsolete heme C metabolic process (GO:0046162)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving heme c, a derivative of heme found in cytochromes c, b4, and f.
Synonyms: haem C metabolic process; haem C metabolism; heme C metabolism
Comment: This term was obsoleted because it is an unnecessary grouping term.
heme C catabolic process (GO:0046163)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of heme C, a derivative of heme found in cytochromes c, b4, and f.
Synonyms: haem C catabolic process; haem C catabolism; heme C breakdown; heme C catabolism; heme C degradation
alcohol catabolic process (GO:0046164)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of alcohols, any of a class of compounds containing one or more hydroxyl groups attached to a saturated carbon atom.
Synonyms: alcohol breakdown; alcohol catabolism; alcohol degradation
alcohol biosynthetic process (GO:0046165)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of alcohols, any of a class of compounds containing one or more hydroxyl groups attached to a saturated carbon atom.
Synonyms: alcohol anabolism; alcohol biosynthesis; alcohol formation; alcohol synthesis
glyceraldehyde-3-phosphate biosynthetic process (GO:0046166)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of glyceraldehyde-3-phosphate, an important intermediate in glycolysis.
Synonyms: glyceraldehyde 3-phosphate biosynthesis; glyceraldehyde 3-phosphate biosynthetic process; glyceraldehyde-3-phosphate anabolism; glyceraldehyde-3-phosphate biosynthesis; glyceraldehyde-3-phosphate formation; glyceraldehyde-3-phosphate synthesis
glycerol-3-phosphate biosynthetic process (GO:0046167)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of glycerol-3-phosphate, a phosphoric monoester of glycerol.
Synonyms: glycerol-3-phosphate anabolism; glycerol-3-phosphate biosynthesis; glycerol-3-phosphate formation; glycerol-3-phosphate synthesis
glycerol-3-phosphate catabolic process (GO:0046168)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of glycerol-3-phosphate, a phosphoric monoester of glycerol.
Synonyms: glycerol-3-phosphate breakdown; glycerol-3-phosphate catabolism; glycerol-3-phosphate degradation
methanol biosynthetic process (GO:0046169)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of methanol, CH3-OH, a colorless, flammable, mobile, poisonous liquid, widely used as a solvent.
Synonyms: methanol anabolism; methanol biosynthesis; methanol formation; methanol synthesis
methanol catabolic process (GO:0046170)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of methanol, CH3-OH, a colorless, flammable, mobile, poisonous liquid, widely used as a solvent.
Synonyms: methanol breakdown; methanol catabolism; methanol degradation
octanol catabolic process (GO:0046172)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of octanol, the 8-carbon alcohol with the formula C8H17OH.
Synonyms: octanol breakdown; octanol catabolism; octanol degradation
polyol biosynthetic process (GO:0046173)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of a polyol, any alcohol containing three or more hydroxyl groups attached to saturated carbon atoms.
Synonyms: polyhydric alcohol biosynthetic process; polyol anabolism; polyol biosynthesis; polyol formation; polyol synthesis
polyol catabolic process (GO:0046174)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of a polyol, any alcohol containing three or more hydroxyl groups attached to saturated carbon atoms.
Synonyms: polyhydric alcohol catabolic process; polyol breakdown; polyol catabolism; polyol degradation
aldonic acid biosynthetic process (GO:0046175)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of aldonic acid, a monocarboxylic acid with a chain of three or more carbon atoms, derived from an aldose by oxidation of the aldehydic group.
Synonyms: aldonic acid anabolism; aldonic acid biosynthesis; aldonic acid formation; aldonic acid synthesis
aldonic acid catabolic process (GO:0046176)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of aldonic acid, a monocarboxylic acid with a chain of three or more carbon atoms, derived from an aldose by oxidation of the aldehydic group.
Synonyms: aldonic acid breakdown; aldonic acid catabolism; aldonic acid degradation
obsolete D-gluconate catabolic process (GO:0046177)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the breakdown of D-gluconate, the anion of D-gluconic acid, the aldonic acid derived from glucose.
Synonyms: D-gluconate breakdown; D-gluconate catabolism; D-gluconate degradation
Comment: The reason for obsoletion is that this term represents a molecular function, gluconokinase activity [EC:2.7.1.12].
D-gluconate biosynthetic process (GO:0046178)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of D-gluconate, the anion of D-gluconic acid, the aldonic acid derived from glucose.
Synonyms: D-gluconate anabolism; D-gluconate biosynthesis; D-gluconate formation; D-gluconate synthesis
keto-D-gluconate biosynthetic process (GO:0046179)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of keto-D-gluconate, the anion of keto-D-gluconic acid, an aldonic acid derived from glucose.
Synonyms: keto-D-gluconate anabolism; keto-D-gluconate biosynthesis; keto-D-gluconate formation; keto-D-gluconate synthesis
ketogluconate biosynthetic process (GO:0046180)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of ketogluconate, the anion of ketogluconic acid, an aldonic acid derived from glucose containing a ketonic carbonyl group.
Synonyms: ketogluconate anabolism; ketogluconate biosynthesis; ketogluconate formation; ketogluconate synthesis
ketogluconate catabolic process (GO:0046181)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of ketogluconate, the anion of ketogluconic acid, an aldonic acid derived from glucose containing a ketonic carbonyl group.
Synonyms: ketogluconate breakdown; ketogluconate catabolism; ketogluconate degradation
L-idonate biosynthetic process (GO:0046182)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of L-idonate, the anion of idonic acid, an aldonic acid derived from L-idose, an aldohexose which is epimeric with D-glucose.
Synonyms: L-idonate anabolism; L-idonate biosynthesis; L-idonate formation; L-idonate synthesis
L-idonate catabolic process (GO:0046183)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of L-idonate, the anion of idonic acid, an aldonic acid derived from L-idose, an aldohexose which is epimeric with D-glucose.
Synonyms: L-idonate breakdown; L-idonate catabolism; L-idonate degradation
aldehyde biosynthetic process (GO:0046184)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of aldehydes, any organic compound with the formula R-CH=O.
Synonyms: aldehyde anabolism; aldehyde biosynthesis; aldehyde formation; aldehyde synthesis
aldehyde catabolic process (GO:0046185)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of aldehydes, any organic compound with the formula R-CH=O.
Synonyms: aldehyde breakdown; aldehyde catabolism; aldehyde degradation
acetaldehyde biosynthetic process (GO:0046186)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of acetaldehyde, a colorless, flammable liquid intermediate in the metabolism of alcohol.
Synonyms: acetaldehyde anabolism; acetaldehyde biosynthesis; acetaldehyde formation; acetaldehyde synthesis
methane catabolic process (GO:0046188)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of methane, a colorless, odorless, flammable gas with the formula CH4. It is the simplest of the alkanes.
Synonyms: methane breakdown; methane catabolism; methane degradation
aerobic phenol-containing compound biosynthetic process (GO:0046190)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of a phenol, any compound containing one or more hydroxyl groups directly attached to an aromatic carbon ring, in the presence of oxygen.
Synonyms: aerobic phenol-containing compound anabolism; aerobic phenol-containing compound biosynthesis; aerobic phenol-containing compound formation; aerobic phenol-containing compound synthesis
anaerobic phenol-containing compound biosynthetic process (GO:0046192)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of a phenol, any compound containing one or more hydroxyl groups directly attached to an aromatic carbon ring, in the absence of oxygen.
Synonyms: anaerobic phenol-containing compound anabolism; anaerobic phenol-containing compound biosynthesis; anaerobic phenol-containing compound formation; anaerobic phenol-containing compound synthesis
anaerobic phenol-containing compound catabolic process (GO:0046193)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of a phenol, any compound containing one or more hydroxyl groups directly attached to an aromatic carbon ring, in the absence of oxygen.
Synonyms: anaerobic phenol-containing compound breakdown; anaerobic phenol-containing compound catabolism; anaerobic phenol-containing compound degradation
obsolete pentachlorophenol biosynthetic process (GO:0046194)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of pentachlorophenol, a chlorinated insecticide and fungicide used primarily to protect timber from fungal rot and wood boring insects. Pentachlorophenol is significantly toxic to mammals, plants, and many microorganisms.
Synonyms: pentachlorophenol anabolism; pentachlorophenol biosynthesis; pentachlorophenol biosynthetic process; pentachlorophenol formation; pentachlorophenol synthesis
Comment: This term was made obsolete because pentachlorophenol is not synthesized by living organisms and GO does not cover non-biological processes.
4-nitrophenol catabolic process (GO:0046196)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of 4-nitrophenol, a nitroaromatic compound which is used in the production of dyes, leather treatment agents, fungicides and as an intermediate in the production of the insecticide parathion.
Synonyms: 4-nitrophenol breakdown; 4-nitrophenol catabolism; 4-nitrophenol degradation
orcinol biosynthetic process (GO:0046197)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of orcinol (5-methyl-1,3-benzenediol), an aromatic compound derived from the fermentation of lichen and synthesized by some higher plants.
Synonyms: orcinol anabolism; orcinol biosynthesis; orcinol formation; orcinol synthesis