LiteFold/GO huggingface dataset:
conversion of methionyl-tRNA to N-formyl-methionyl-tRNA (GO:0071951)
Namespace: biological_process
Definition: The modification process that results in the conversion of methionine charged on a tRNA(fMet) to N-formyl-methionine-tRNA(fMet).
conversion of O-phosphoseryl-tRNA to cysteinyl-tRNA (GO:0071952)
Namespace: biological_process
Definition: The modification process that results in the conversion of O-phosphoserine charged on a tRNA(Cys) to cysteinyl-tRNA.
Comment: Note that this process has been observed in some archaeal and bacterial species.
chemokine (C-C motif) ligand 11 production (GO:0071954)
Namespace: biological_process
Definition: The appearance of chemokine (C-C motif) ligand 11 (CCL11, also known as eotaxin-1) due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.
Synonyms: C-C motif chemokine 11 production; CCL-11 production; CCL11 production; eotaxin production; eotaxin-1 production
recycling endosome to Golgi transport (GO:0071955)
Namespace: biological_process
Definition: The directed movement of substances from recycling endosomes to the Golgi.
old mitotic spindle pole body (GO:0071957)
Namespace: cellular_component
Definition: The spindle pole body that exists in a cell prior to spindle pole body duplication. An old spindle pole body segregates to the daughter cell upon mitosis, and lacks active proteins involved in signaling exit from mitosis.
Synonyms: old SPB
new mitotic spindle pole body (GO:0071958)
Namespace: cellular_component
Definition: The spindle pole body that is formed by spindle pole body duplication, and to which proteins involved in mitotic exit signaling (for example, the septation initiation network in fission yeast) localize.
Synonyms: new SPB
maintenance of mitotic sister chromatid cohesion, arms (GO:0071959)
Namespace: biological_process
Definition: The process in which the association between sister chromatids of a replicated chromosome along the length of the chromosome arms, is maintained as chromosomes condense, attach to the spindle in a bipolar orientation, and congress to the metaphase plate during a mitotic cell cycle.
Synonyms: maintenance of mitotic sister chromatin cohesion along arms; maintenance of sister chromatin cohesion along arms at mitosis
maintenance of mitotic sister chromatid cohesion, centromeric (GO:0071960)
Namespace: biological_process
Definition: The process in which the association between sister chromatids of a replicated chromosome along the length of the centromeric region is maintained as chromosomes condense, attach to the spindle in a bipolar orientation, and congress to the metaphase plate during a mitotic cell cycle.
Synonyms: maintenance of centromeric mitotic sister chromatin cohesion; maintenance of mitotic sister chromatin cohesion at centromere; maintenance of sister chromatin cohesion at centromere at mitosis
mitotic sister chromatid cohesion, arms (GO:0071961)
Namespace: biological_process
Definition: The cell cycle process in which the sister chromatids of a replicated chromosome are joined along the length of the chromosome arms during mitosis.
Synonyms: mitotic sister chromatid cohesion along arms; sister chromatid cohesion along arms at mitosis
mitotic sister chromatid cohesion, centromeric (GO:0071962)
Namespace: biological_process
Definition: The cell cycle process in which centromeres of sister chromatids are joined during mitosis.
Synonyms: centromeric mitotic sister chromatin cohesion; mitotic sister chromatid cohesion at centromere; sister chromatid cohesion at centromere at mitosis
establishment of cell polarity regulating cell shape (GO:0071964)
Namespace: biological_process
Definition: Any cellular process that results in the specification or formation of a polarized intracellular organization or cell growth pattern that regulates the shape of a cell.
multicellular organismal locomotion (GO:0071965)
Namespace: biological_process
Definition: Locomotion in a multicellular organism, i.e. self-propelled movement of a multicellular organism from one location to another.
fungal-type cell wall polysaccharide metabolic process (GO:0071966)
Namespace: biological_process
Definition: The chemical reactions and pathways involving the polysaccharides which make up the fungal-type cell wall.
lipid A-core heptosyltransferase activity (GO:0071968)
Namespace: molecular_function
Definition: Catalysis of the reaction: galactosyl-glucosyl3-heptosyl3-KDO2-lipid A-bisphosphate + ADP-L-glycero-beta-D-manno-heptose = lipid A-core + ADP + H+.
fungal-type cell wall (1->3)-beta-D-glucan metabolic process (GO:0071969)
Namespace: biological_process
Definition: The chemical reactions and pathways involving (1->3)-beta-D-glucans, compounds composed of glucose residues linked by (1->3)-beta-D-glucosidic bonds, found in the walls of fungi.
Synonyms: fungal-type cell wall 1,3-beta-D-glucan metabolic process; fungal-type cell wall 1,3-beta-glucan metabolism; fungal-type cell wall beta-1,3 glucan metabolic process; fungal-type cell wall beta-1,3 glucan metabolism
fungal-type cell wall (1->3)-beta-D-glucan biosynthetic process (GO:0071970)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of (1->3)-beta-D-glucans, compounds composed of glucose residues linked by (1->3)-beta-D-glucosidic bonds, found in fungal cell walls.
Synonyms: fungal-type cell wall 1,3-beta-D-glucan biosynthetic process; fungal-type cell wall 1,3-beta-glucan anabolism; fungal-type cell wall 1,3-beta-glucan biosynthesis; fungal-type cell wall 1,3-beta-glucan formation; fungal-type cell wall 1,3-beta-glucan synthesis; fungal-type cell wall beta-1,3-glucan anabolism; fungal-type cell wall beta-1,3-glucan biosynthesis; fungal-type cell wall beta-1,3-glucan biosynthetic process; fungal-type cell wall beta-1,3-glucan formation; fungal-type cell wall beta-1,3-glucan synthesis
peptidoglycan L,D-transpeptidase activity (GO:0071972)
Namespace: molecular_function
Definition: Catalysis of the reaction: 2 a peptidoglycan dimer (tetrapeptide) + 3 H2O = a peptidoglycan tetramer with L,D cross-links (L-Lys-D-Asn-L-Lys) + di-trans,poly-cis-undecaprenyl diphosphate + 4 D-alanine.
bacterial-type flagellum-dependent cell motility (GO:0071973)
Namespace: biological_process
Definition: Cell motility due to the motion of one or more bacterial-type flagella. A bacterial-type flagellum is a motor complex composed of an extracellular helical protein filament coupled to a rotary motor embedded in the cell envelope.
Synonyms: bacterial-type flagellar cell motility; flagellin-based flagellar cell motility
cell swimming (GO:0071975)
Namespace: biological_process
Definition: Cell motility that results in the smooth movement of a cell through a liquid medium.
Synonyms: cell swimming motility
cell gliding (GO:0071976)
Namespace: biological_process
Definition: Cell motility that results in the smooth movement of a cell along a solid surface.
Synonyms: cell gliding motility
bacterial-type flagellum-dependent swimming motility (GO:0071977)
Namespace: biological_process
Definition: Bacterial-type flagellum-dependent cell motility that results in the smooth movement of a cell through a liquid medium.
Synonyms: bacterial-type flagellar swimming motility; bacterial-type flagellum-mediated cell swimming
bacterial-type flagellum-dependent swarming motility (GO:0071978)
Namespace: biological_process
Definition: Bacterial-type flagellum-dependent cell motility in which the action of numerous flagella results in the smooth movement of a group of cells along a solid surface. Swarming motility is observed in groups of bacteria.
Synonyms: bacterial-type flagellar swarming motility; bacterial-type flagellum-mediated cell swarming
cytoskeleton-mediated cell swimming (GO:0071979)
Namespace: biological_process
Definition: Cell motility in which contractile cytoskeletal elements alter cell shape, resulting in the smooth movement of a cell through a liquid medium.
Synonyms: cytoskeleton-mediated swimming motility
cell surface adhesin-mediated gliding motility (GO:0071980)
Namespace: biological_process
Definition: Cell gliding that results from the actions of cell surface adhesin proteins that are propelled by membrane motor proteins.
exit from diapause (GO:0071981)
Namespace: biological_process
Definition: The dormancy process that results in exit from diapause. Diapause is a neurohormonally mediated, dynamic state of low metabolic activity. Associated characteristics of this form of dormancy include reduced morphogenesis, increased resistance to environmental extremes, and altered or reduced behavioral activity. Full expression develops in a species-specific manner, usually in response to a number of environmental stimuli that precede unfavorable conditions. Once diapause has begun, metabolic activity is suppressed even if conditions favorable for development prevail. Once initiated, only certain stimuli are capable of releasing the organism from this state, and this characteristic is essential in distinguishing diapause from hibernation.
maintenance of diapause (GO:0071982)
Namespace: biological_process
Definition: The dormancy process that results an organism remaining in diapause. Diapause is a neurohormonally mediated, dynamic state of low metabolic activity. Associated characteristics of this form of dormancy include reduced morphogenesis, increased resistance to environmental extremes, and altered or reduced behavioral activity. Full expression develops in a species-specific manner, usually in response to a number of environmental stimuli that precede unfavorable conditions. Once diapause has begun, metabolic activity is suppressed even if conditions favorable for development prevail. Once initiated, only certain stimuli are capable of releasing the organism from this state, and this characteristic is essential in distinguishing diapause from hibernation.
exit from reproductive diapause (GO:0071983)
Namespace: biological_process
Definition: The dormancy process that results in exit from reproductive diapause. Reproductive diapause is a form of diapause where the organism itself will remain fully active, including feeding and other routine activities, but the reproductive organs experience a tissue-specific reduction in metabolism, with characteristic triggering and releasing stimuli.
maintenance of reproductive diapause (GO:0071984)
Namespace: biological_process
Definition: The dormancy process that results an organism remaining in reproductive diapause. Reproductive diapause is a form of diapause where the organism itself will remain fully active, including feeding and other routine activities, but the reproductive organs experience a tissue-specific reduction in metabolism, with characteristic triggering and releasing stimuli.
multivesicular body sorting pathway (GO:0071985)
Namespace: biological_process
Definition: A vesicle-mediated transport process in which transmembrane proteins are ubiquitylated to facilitate their entry into luminal vesicles of multivesicular bodies (MVBs); upon subsequent fusion of MVBs with lysosomes or vacuoles, the cargo proteins are degraded.
Ragulator complex (GO:0071986)
Namespace: cellular_component
Definition: A vacuolar membrane-anchored guanine nucleotide exchange factor (GEF) complex for the Rag GTPases (Gtr1-Gtr2 GTPase complex GO:1990131) in TORC1 signaling pathway. In human, Ragulator is comprised of the membrane anchor subunit LAMTOR1 (Meh1p in S. cerevisiae, Lam1 in S. pombe), a GEF subunit LAMTOR2 ( Slm4 in S. cerevisiae , Lam2 in S. pombe ) , LAMTOR3 (no S. cerevisiae ortholog identified, Lam3 in S. pombe) , LAMTOR4 (no S. cerevisiae ortholog identified, Lam4 in S. pombe), and LAMTOR5 (no S. cerevisiae or S. pombe ortholog identified).
Synonyms: EGO complex; EGO-GSE complex; GSE complex; GTPase-containing complex for Gap1p sorting in the endosome; MAPKSP1/ROBLD3/C11orf59 complex; Rag GEF
WD40-repeat domain binding (GO:0071987)
Namespace: molecular_function
Definition: Binding to a WD40 repeat domain of a protein. The WD40 repeat is a short structural motif of approximately 40 amino acids, often terminating in a tryptophan-aspartic acid (W-D) dipeptide. Several of these repeats are combined to form a type of protein domain called the WD domain.
Synonyms: beta-transducin repeat domain binding; WD domain binding
establishment of protein localization to spindle pole body (GO:0071989)
Namespace: biological_process
Definition: The directed movement of a protein to a specific location at the spindle pole body.
Synonyms: establishment of protein localisation to spindle pole body
maintenance of protein location to spindle pole body (GO:0071990)
Namespace: biological_process
Definition: Any process in which a protein is maintained in a specific location at the spindle pole body, and is prevented from moving elsewhere.
Synonyms: maintenance of protein location at spindle pole body; maintenance of protein location in spindle pole body
phytochelatin transport (GO:0071993)
Namespace: biological_process
Definition: The directed movement of a phytochelatin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Phytochelatins are a group of peptides that bind metals (Cd, Zn, Cu, Pb, Hg) in thiolate coordination complexes.
Synonyms: cadystin transport
phytochelatin transmembrane transport (GO:0071994)
Namespace: biological_process
Definition: The process in which a phytochelatin is transported across a membrane. Phytochelatins are a group of peptides that bind metals (Cd, Zn, Cu, Pb, Hg) in thiolate coordination complexes.
Synonyms: cadystin transmembrane transport; phytochelatin membrane transport
Comment: Note that this term is not intended for use in annotating lateral movement within membranes.
glutathione transmembrane import into vacuole (GO:0071996)
Namespace: biological_process
Definition: The directed movement of glutathione into the vacuole across the vacuolar membrane.
Synonyms: glutathione transport into vacuole
ascospore release from ascus (GO:0071998)
Namespace: biological_process
Definition: A developmental process that results in the discharge of ascospores from the ascus. Ascospore release may be active or passive.
Synonyms: ascospore liberation
obsolete extracellular polysaccharide catabolic process involved in ascospore release from ascus (GO:0072000)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the breakdown of polysaccharides in the ascus wall that contributes to the release of ascospores from the ascus.
Synonyms: ascus catabolic process; ascus endolysis; extracellular polysaccharide breakdown involved in ascospore release from ascus; extracellular polysaccharide catabolism involved in ascospore release from ascus; extracellular polysaccharide degradation involved in ascospore release from ascus
Comment: The reason for obsoletion is that this term is pre-composed and should be represented as a GO-CAM model.
renal system development (GO:0072001)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the renal system over time, from its formation to the mature structure. The renal system maintains fluid balance and contributes to electrolyte balance, acid/base balance, and disposal of nitrogenous waste products. In humans, the renal system comprises a pair of kidneys, a pair of ureters, urinary bladder, urethra, sphincter muscle and associated blood vessels.
Synonyms: urinary system development; urinary tract development
Malpighian tubule development (GO:0072002)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the Malpighian tubule over time, from its formation to the mature structure. A Malpighian tubule is a fine, thin-walled excretory tubule in insects which leads into the posterior part of the gut.
kidney rudiment formation (GO:0072003)
Namespace: biological_process
Definition: The developmental process pertaining to the initial formation of a kidney rudiment from unspecified parts. A kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine.
Synonyms: kidney anlage formation
kidney field specification (GO:0072004)
Namespace: biological_process
Definition: The process that results in the delineation of regions of the embryo into the area in which the kidney rudiment will develop.
Synonyms: specification of kidney anlage
maintenance of kidney identity (GO:0072005)
Namespace: biological_process
Definition: The process in which the identity of a kidney is maintained. Identity is considered to be the aggregate of characteristics by which a structure is recognized.
Synonyms: maintenance of kidney anlage identity
nephron development (GO:0072006)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the nephron over time, from its formation to the mature structure. A nephron is the functional unit of the kidney.
Synonyms: nephrogenesis
mesangial cell differentiation (GO:0072007)
Namespace: biological_process
Definition: The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the mesangial cells of the kidney as it progresses from its formation to the mature state.
glomerular mesangial cell differentiation (GO:0072008)
Namespace: biological_process
Definition: The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the glomerular mesangial cells of the kidney as it progresses from its formation to the mature state.
nephron epithelium development (GO:0072009)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the nephron epithelium over time, from its formation to the mature structure. An epithelium is a tissue that covers the internal or external surfaces of an anatomical structure. The nephron epithelium is a tissue that covers the surface of a nephron.
glomerular epithelium development (GO:0072010)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the glomerular epithelium over time, from its formation to the mature structure. The glomerular epithelium is an epithelial tissue that covers the outer surfaces of the glomerulus. The glomerular epithelium consists of both parietal and visceral epithelium. Metanephric glomerular parietal epithelial cells are specialized epithelial cells that form tight junctions as a barrier to protein transport. A metanephric glomerular visceral epithelial cell is a specialized epithelial cell that contains 'feet' that interdigitate with the 'feet' of other glomerular epithelial cells in the metanephros.
glomerular endothelium development (GO:0072011)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the glomerular endothelium over time, from its formation to the mature structure. The glomerular endothelium is an epithelial tissue that covers the internal surfaces of the glomerulus.
glomerulus vasculature development (GO:0072012)
Namespace: biological_process
Definition: The biological process whose specific outcome is the progression of a glomerulus vasculature from an initial condition to its mature state. This process begins with the formation of the glomerulus vasculature and ends with the mature structure. The glomerulus vasculature is composed of the tubule structures that carry blood or lymph in the glomerulus.
Synonyms: glomerulus capillary development
glomus development (GO:0072013)
Namespace: biological_process
Definition: The progression of the glomus over time from its initial formation until its mature state. The glomus forms from the splanchnic intermediate mesoderm and is the vascularized filtration unit, filtering the blood before it enters the tubules. The glomus is external to the nephron and extends over more than one body segment.
Synonyms: pronephric glomus development
proximal tubule development (GO:0072014)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the proximal tubule over time, from its formation to the mature structure. In mammals, the proximal tubule is a nephron tubule that connects Bowman's capsule to the descending thin limb of the loop of Henle. It has a brush border epithelial morphology.
glomerular parietal epithelial cell development (GO:0072016)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of a glomerular parietal epithelial cell over time, from its formation to the mature structure. Glomerular parietal epithelial cells are specialized epithelial cells that form tight junctions as a barrier to protein transport.
Synonyms: Bowman's capsule development
distal tubule development (GO:0072017)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the distal tubule over time, from its formation to the mature structure. In mammals, the distal tubule is a nephron tubule that begins at the macula densa and extends to the connecting tubule.
proximal straight tubule development (GO:0072020)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the proximal straight tubule over time, from its formation to the mature structure. The proximal straight tubule is the part of the descending limb that extends from the proximal convoluted tubule to the descending thin tubule.
Synonyms: S3 development
ascending thin limb development (GO:0072021)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of an ascending thin limb over time, from its formation to the mature structure. The ascending thin limb is a segment of a nephron tubule lying in the inner medulla that is permeable to ions but not to water and has a simple epithelium; active transepithelial solute transport is absent.
descending thin limb development (GO:0072022)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the descending thin limb over time, from its formation to the mature structure. The descending thin limb is a part of the loop of Henle situated just after the proximal straight tubule (S3). It extends to the tip of the loop of Henle.
macula densa development (GO:0072024)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the macula densa over time, from its formation to the mature structure. The macula densa is an area of specialized cells in the distal tubule that makes contact with the vascular pole of the glomerulus.
distal convoluted tubule development (GO:0072025)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the distal convoluted tubule over time, from its formation to the mature structure. The distal convoluted tubule is the first segment of the nephron lying just downstream from the loop of Henle, immediately after the macula densa. Among other functions, in humans it is responsible for the reabsorption of about 5% of filtered sodium via the thiazide-sensitive Na-Cl symporter.
connecting tubule development (GO:0072027)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the connecting tubule over time, from its formation to the mature structure. The connecting tubule is a tubular segment of the nephron; it connects the distal convoluted tubule to the collecting duct.
Synonyms: connecting duct development
nephron morphogenesis (GO:0072028)
Namespace: biological_process
Definition: The process in which the anatomical structures of the nephron are generated and organized. A nephron is the functional unit of the kidney.
long nephron development (GO:0072029)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of a long nephron over time, from its formation to the mature structure. Long nephrons are associated with juxtamedullary glomeruli and extend into the inner medulla.
Synonyms: juxtamedullary nephron development