LiteFold/GO huggingface dataset:
obsolete collagenase 4 activity (GO:0030403)
Namespace: molecular_function
Definition: OBSOLETE. Was not defined before being made obsolete.
Synonyms: collagenase 4 activity; matrix metalloproteinase 18; MMP-18
Comment: This term was made obsolete because it represents a gene product.
obsolete collagenase 3 activity (GO:0030404)
Namespace: molecular_function
Definition: OBSOLETE. Was not defined before being made obsolete.
Synonyms: collagenase 3 activity; matrix metalloproteinase 13; MMP-13
Comment: This term was made obsolete because it represents a gene product.
obsolete matrix metalloproteinase 19 activity (GO:0030405)
Namespace: molecular_function
Definition: OBSOLETE. Was not defined before being made obsolete.
Synonyms: matrix metalloproteinase 19 activity; MMP-19
Comment: This term was made obsolete because it represents a gene product.
obsolete matrix metalloproteinase 25 activity (GO:0030406)
Namespace: molecular_function
Definition: OBSOLETE. Was not defined before being made obsolete.
Synonyms: matrix metalloproteinase 25 activity; MMP-25; MT6-MMP
Comment: This term was made obsolete because it represents a gene product.
glycine formimidoyltransferase activity (GO:0030408)
Namespace: molecular_function
Definition: Catalysis of the reaction: 5-formimidoyltetrahydrofolate + glycine = (6S)-5,6,7,8-tetrahydrofolate + N-formimidoylglycine.
Synonyms: 5-formimidoyltetrahydrofolate:glycine N-formimidoyltransferase activity; FIG formiminotransferase activity; formimidoyltransferase activity; formiminoglycine formiminotransferase activity; formiminotransferase activity; glycine formiminotransferase activity
glutamate formimidoyltransferase activity (GO:0030409)
Namespace: molecular_function
Definition: Catalysis of the reaction: 5-formimidoyltetrahydrofolate + L-glutamate = tetrahydrofolate + N-formimidoyl-L-glutamate.
Synonyms: 5-formimidoyltetrahydrofolate:L-glutamate N-formimidoyltransferase activity; formimidoyltransferase activity; formiminoglutamic acid transferase activity; formiminoglutamic formiminotransferase activity; formiminotransferase activity; glutamate formiminotransferase activity; glutamate formyltransferase activity
nicotianamine synthase activity (GO:0030410)
Namespace: molecular_function
Definition: Catalysis of the reaction: 3 S-adenosyl-L-methionine(1+) = 3 S-methyl-5'-thioadenosine + 3 H+ + nicotianamine.
Synonyms: S-adenosyl-L-methionine:S-adenosyl-L-methionine:S-adenosyl-L-methionine 3-amino-3-carboxypropyltransferase activity
scytalone dehydratase activity (GO:0030411)
Namespace: molecular_function
Definition: Catalysis of the reaction: scytalone = 1,3,8-trihydroxynaphthalene + H2O.
Synonyms: scytalone 7,8-hydro-lyase (1,3,8-trihydroxynaphthalene-forming); scytalone 7,8-hydro-lyase activity
formimidoyltetrahydrofolate cyclodeaminase activity (GO:0030412)
Namespace: molecular_function
Definition: Catalysis of the reaction: 5-formimidoyltetrahydrofolate + 2 H+ = 5,10-methenyltetrahydrofolate + NH4.
Synonyms: 5-formimidoyltetrahydrofolate ammonia-lyase (cyclizing); 5-formimidoyltetrahydrofolate ammonia-lyase (cyclizing; 5,10-methenyltetrahydrofolate-forming); formiminotetrahydrofolate cyclodeaminase activity
Comment: Note that cyclodeaminases are lyases according to EC, whereas deaminases are hydrolases.
competence pheromone activity (GO:0030413)
Namespace: molecular_function
Definition: A small peptide excreted by a naturally transformable bacterium (e.g. Bacillus subtilis) that transmits a signal required for the establishment of competence.
peptidase inhibitor activity (GO:0030414)
Namespace: molecular_function
Definition: Binds to and stops, prevents or reduces the activity of a peptidase, any enzyme that catalyzes the hydrolysis peptide bonds.
Synonyms: protease inhibitor activity
obsolete carboxypeptidase A inhibitor activity (GO:0030415)
Namespace: molecular_function
Definition: OBSOLETE. Stops, prevents or reduces the activity of the enzyme carboxypeptidase A.
Synonyms: carboxypeptidase A inhibitor activity
Comment: This term was made obsolete because it represents a regulator of an obsolete molecular function.
methylamine metabolic process (GO:0030416)
Namespace: biological_process
Definition: The chemical reactions and pathways involving methylamine (CH3NH2).
Synonyms: methylamine metabolism; methylammonium metabolic process; methylammonium metabolism
obsolete nicotianamine metabolic process (GO:0030417)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving nicotianamine, 2(S),3'2(S),3''(S)-N-(N-(3-amino-3-carboxypropyl)-3-amino-3-carboxypropyl)-azetidine-2-carboxylic acid.
Synonyms: nicotianamine metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
nicotianamine biosynthetic process (GO:0030418)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of nicotianamine.
Synonyms: nicotianamine anabolism; nicotianamine biosynthesis; nicotianamine formation; nicotianamine synthesis
obsolete nicotianamine catabolic process (GO:0030419)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the breakdown of nicotianamine, 2(S),3'2(S),3''(S)-N-(N-(3-amino-3-carboxypropyl)-3-amino-3-carboxypropyl)-azetidine-2-carboxylic acid.
Synonyms: nicotianamine breakdown; nicotianamine catabolism; nicotianamine degradation
Comment: This term was obsoleted because there is no evidence that a specific pathway for nicotianamine degradation exists.
establishment of competence for transformation (GO:0030420)
Namespace: biological_process
Definition: The process in which a naturally transformable bacterium acquires the ability to take up exogenous DNA. This term should be applied only to naturally transformable bacteria, and should not be used in the context of artificially induced bacterial transformation.
defecation (GO:0030421)
Namespace: biological_process
Definition: The expulsion of feces from the rectum.
siRNA processing (GO:0030422)
Namespace: biological_process
Definition: A process leading to the generation of a functional small interfering RNA (siRNA). Includes the cleavage of double-stranded RNA to form small interfering RNA molecules (siRNAs) of 21-23 nucleotides. May also include amplification of the siRNA by RNA-directed RNA polymerase.
Synonyms: chromatin silencing by small RNA, production of guide RNAs; chromatin silencing by small RNA, production of siRNA; production of guide RNAs involved in chromatin silencing by small RNA; production of guide RNAs involved in RNA interference; production of siRNA; production of siRNA involved in chromatin silencing by small RNA; production of siRNA involved in gene silencing by small RNA; production of siRNA involved in post-transcriptional gene silencing by RNA; production of siRNA involved in PTGS; production of siRNA involved in RNA interference; RNA interference, production of guide RNAs; RNA interference, production of siRNA
axon (GO:0030424)
Namespace: cellular_component
Definition: The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter.
dendrite (GO:0030425)
Namespace: cellular_component
Definition: A neuron projection that has a short, tapering, morphology. Dendrites receive and integrate signals from other neurons or from sensory stimuli, and conduct nerve impulses towards the axon or the cell body. In most neurons, the impulse is conveyed from dendrites to axon via the cell body, but in some types of unipolar neuron, the impulse does not travel via the cell body.
growth cone (GO:0030426)
Namespace: cellular_component
Definition: The migrating motile tip of a growing neuron projection, where actin accumulates, and the actin cytoskeleton is the most dynamic.
site of polarized growth (GO:0030427)
Namespace: cellular_component
Definition: Any part of a cell where non-isotropic growth takes place.
cell septum (GO:0030428)
Namespace: cellular_component
Definition: A structure composed of peptidoglycan and often chitin in addition to other materials. It usually forms perpendicular to the long axis of a cell or hypha and grows centripetally from the cell wall to the center of the cell and often functions in the compartmentalization of a cell into two daughter cells.
Synonyms: cross wall; septum
kynureninase activity (GO:0030429)
Namespace: molecular_function
Definition: Catalysis of the reaction: L-kynurenine + H2O = anthranilate + L-alanine + H+. Also acts on 3'-hydroxykynurenine and some other (3-arylcarbonyl)- alanines.
Synonyms: kynurenine hydrolase activity; L-kynurenine hydrolase activity
host cell cytoplasm (GO:0030430)
Namespace: cellular_component
Definition: The cytoplasm of a host cell.
Synonyms: other organism cytoplasm
sleep (GO:0030431)
Namespace: biological_process
Definition: Any process in which an organism enters and maintains a periodic, readily reversible state of reduced awareness and metabolic activity. Usually accompanied by physical relaxation, the onset of sleep in humans and other mammals is marked by a change in the electrical activity of the brain.
Synonyms: diapause; dormancy; lethargus
peristalsis (GO:0030432)
Namespace: biological_process
Definition: A wavelike sequence of involuntary muscular contraction and relaxation that passes along a tubelike structure, such as the intestine, impelling the contents onwards.
obsolete ubiquitin-dependent ERAD pathway (GO:0030433)
Namespace: biological_process
Definition: OBSOLETE. The series of steps necessary to target endoplasmic reticulum (ER)-resident proteins for degradation by the cytoplasmic proteasome. Begins with recognition of the ER-resident protein, includes retrotranslocation (dislocation) of the protein from the ER to the cytosol, protein ubiquitination necessary for correct substrate transfer, transport of the protein to the proteasome, and ends with degradation of the protein by the cytoplasmic proteasome.
Comment: This term was added in error (identical process to the parent term)
asexual sporulation (GO:0030436)
Namespace: biological_process
Definition: The formation of spores derived from the products of an asexual cell division. Examples of this process are found in bacteria and fungi.
Synonyms: asexual reproductive sporulation; asexual spore formation; mitotic spore formation; mitotic sporulation
ascospore formation (GO:0030437)
Namespace: biological_process
Definition: The process in which cells that are products of meiosis acquire the specialized features of ascospores. Ascospores are generally found in clusters of four or eight spores within a single mother cell, the ascus, and are characteristic of the ascomycete fungi (phylum Ascomycota).
Synonyms: ascospore biosynthesis; spore formation; sporulation
Comment: Note that ascospores and asci are separate biological structures. The ascus is the structure that contain the ascospores, but the development of the ascus is a different process than the formation of the ascospores themselves; for instance, some mutations affect sporulation without affecting ascus development. For this reason, GO:0030437 ascospore formation and GO:0075317 ascus development are different terms and are not linked.
obsolete MAPKKK cascade during sporulation (sensu Fungi) (GO:0030438)
Namespace: biological_process
Definition: OBSOLETE. (Was not defined before being made obsolete).
Synonyms: MAPKKK cascade during sporulation (sensu Fungi)
Comment: This term was made obsolete because it is a gene product specific term.
obsolete activation of MAPK during sporulation (sensu Fungi) (GO:0030439)
Namespace: biological_process
Definition: OBSOLETE. (Was not defined before being made obsolete).
Synonyms: activation of MAPK during sporulation (sensu Fungi)
Comment: This term was made obsolete because it is a gene product specific term.
obsolete activation of MAPKK during sporulation (sensu Fungi) (GO:0030440)
Namespace: biological_process
Definition: OBSOLETE. (Was not defined before being made obsolete).
Synonyms: activation of MAPKK during sporulation (sensu Fungi)
Comment: This term was made obsolete because it is a gene product specific term.
obsolete activation of MAPKKK during sporulation (sensu Fungi) (GO:0030441)
Namespace: biological_process
Definition: OBSOLETE. (Was not defined before being made obsolete).
Synonyms: activation of MAPKKK during sporulation (sensu Fungi)
Comment: This term was made obsolete because it is a gene product specific term.
obsolete inactivation of MAPK during sporulation (sensu Fungi) (GO:0030442)
Namespace: biological_process
Definition: OBSOLETE. (Was not defined before being made obsolete).
Synonyms: inactivation of MAPK during sporulation (sensu Fungi)
Comment: This term was made obsolete because it is a gene product specific term.
obsolete nuclear translocation of MAPK during sporulation (sensu Fungi) (GO:0030443)
Namespace: biological_process
Definition: OBSOLETE. (Was not defined before being made obsolete).
Synonyms: nuclear translocation of MAPK during sporulation (sensu Fungi)
Comment: This term was made obsolete because it is a gene product specific term.
yeast-form cell wall (GO:0030445)
Namespace: cellular_component
Definition: The wall surrounding a cell of a dimorphic fungus growing in the single-cell budding yeast form, in contrast to the filamentous or hyphal form.
Comment: See also the Fungal Anatomy Ontology term 'vegetative cell ; FAO:0000032'.
hyphal cell wall (GO:0030446)
Namespace: cellular_component
Definition: The cell wall surrounding a fungal hypha.
Comment: See also the Fungal Anatomy Ontology term 'hypha ; FAO:0001001'.
filamentous growth (GO:0030447)
Namespace: biological_process
Definition: The process in which a multicellular organism, a unicellular organism or a group of unicellular organisms grow in a threadlike, filamentous shape.
hyphal growth (GO:0030448)
Namespace: biological_process
Definition: Growth of fungi as threadlike, tubular structures that may contain multiple nuclei and may or may not be divided internally by septa, or cross-walls.
Synonyms: formation of symbiont invasive hypha in host; formation of symbiont invasive hypha within host; formation of symbiont invasive hypha within host during symbiotic interaction; invasive hyphal growth; symbiont invasive hypha formation within host
regulation of complement activation (GO:0030449)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of complement activation.
Synonyms: regulation of complement cascade
regulation of complement activation, classical pathway (GO:0030450)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the classical pathway of complement activation.
Synonyms: regulation of complement cascade, classical pathway
obsolete MAPKKK cascade (mating sensu Fungi) (GO:0030455)
Namespace: biological_process
Definition: OBSOLETE. MAPKKK cascade involved in transducing mating pheromone signal in a fungus.
Synonyms: MAPKKK cascade (mating sensu Fungi)
Comment: This term was made obsolete because it is a gene product specific term.
obsolete activation of MAPK (mating sensu Fungi) (GO:0030456)
Namespace: biological_process
Definition: OBSOLETE. (Was not defined before being made obsolete).
Synonyms: activation of MAPK (mating sensu Fungi)
Comment: This term was made obsolete because it is a gene product specific term.
obsolete activation of MAPKK (mating sensu Fungi) (GO:0030457)
Namespace: biological_process
Definition: OBSOLETE. (Was not defined before being made obsolete).
Synonyms: activation of MAPKK (mating sensu Fungi)
Comment: This term was made obsolete because it is a gene product specific term.
obsolete inactivation of MAPK (mating sensu Fungi) (GO:0030459)
Namespace: biological_process
Definition: OBSOLETE. (Was not defined before being made obsolete).
Synonyms: inactivation of MAPK (mating sensu Fungi)
Comment: This term was made obsolete because it is a gene product specific term.
obsolete nuclear translocation of MAPK (mating sensu Fungi) (GO:0030460)
Namespace: biological_process
Definition: OBSOLETE. (Was not defined before being made obsolete).
Synonyms: nuclear translocation of MAPK (mating sensu Fungi)
Comment: This term was made obsolete because it is a gene product specific term.
obsolete cell aging (sensu Fungi) (GO:0030463)
Namespace: biological_process
Definition: OBSOLETE. (Was not defined before being made obsolete).
Synonyms: cell aging (sensu Fungi)
Comment: This term was made obsolete because it does not describe a biological process that is distinct from 'cell aging'.
obsolete autophagic death (sensu Fungi) (GO:0030465)
Namespace: biological_process
Definition: OBSOLETE. (Was not defined before being made obsolete).
Synonyms: autophagic death (sensu Fungi)
Comment: This term was made obsolete because a more correct term has been created.
silent mating-type cassette heterochromatin formation (GO:0030466)
Namespace: biological_process
Definition: Repression of transcription at silent mating-type loci by alteration of the structure of chromatin.
Synonyms: aging-dependent sterility; chromatin silencing at HML and HMR; chromatin silencing at silent mating-type cassette; establishment of chromatin silencing at silent mating-type cassette; heterochromatic silencing at silent mating-type cassette; silent mating type cassette region heterochromatin formation; silent mating-type cassette chromatin silencing; silent mating-type cassette heterochromatin assembly; silent-mating type cassette region heterochromatin formation
obsolete spore germination (sensu Fungi) (GO:0030470)
Namespace: biological_process
Definition: OBSOLETE. Process of breakdown or opening of the spore-containing structure, modification of the spore wall, and resumption of growth of the spore. As in, but not restricted to, the fungi (Fungi, ncbi_taxonomy_id:4751).
Synonyms: germination (sensu Saccharomyces); spore germination (sensu Fungi)
Comment: This term was made obsolete because a sensu term was not needed.
obsolete spindle pole body and microtubule cycle (sensu Fungi) (GO:0030471)
Namespace: biological_process
Definition: OBSOLETE. The dynamics of the spindle pole body and microtubule cytoskeleton during the cell cycle. Includes spindle pole body duplication and separation and formation and elongation of the mitotic spindle. As in, but not restricted to, the fungi (Fungi, ncbi_taxonomy_id:4751).
Synonyms: spindle pole body and microtubule cycle (sensu Fungi); spindle pole body and microtubule cycle (sensu Saccharomyces)
Comment: This term was made obsolete because it has been superseded by more accurate terms to represent the biological processes occurring, and it is not clear that this term represents a useful entity.
nuclear migration along microtubule (GO:0030473)
Namespace: biological_process
Definition: The directed movement of the nucleus along microtubules within the cell, mediated by motor proteins.
Synonyms: microtubule cytoskeleton-dependent nuclear positioning; microtubule cytoskeleton-dependent nucleus positioning; microtubule-dependent nuclear positioning; microtubule-dependent nucleus positioning; microtubule-mediated nuclear migration; nuclear migration, microtubule-mediated; nuclear movement, microtubule-mediated; nucleus migration; transport of nucleus by microtubules; transport of nucleus, microtubule-mediated
spindle pole body duplication (GO:0030474)
Namespace: biological_process
Definition: Construction of a new spindle pole body.
Synonyms: spindle pole body assembly; spindle pole body biogenesis; spindle pole body biosynthesis; spindle pole body duplication associated with nuclear envelope; spindle pole body duplication in cytoplasm; spindle pole body formation; spindle pole body replication
ascospore wall assembly (GO:0030476)
Namespace: biological_process
Definition: The aggregation, arrangement and bonding together of a set of components to form an ascospore wall. During sporulation in Ascomycota, each ascospore nucleus becomes surrounded by a specialized spore wall, formed by deposition of spore wall components in the lumenal space between the outer and inner leaflets of the prospore membrane. An example of this process is found in Saccharomyces cerevisiae.
Synonyms: spore wall assembly
actin cap (GO:0030478)
Namespace: cellular_component
Definition: Polarized accumulation of cytoskeletal proteins (including F-actin) and regulatory proteins in a cell. An example of this is the actin cap found in Saccharomyces cerevisiae.
actin cortical patch (GO:0030479)
Namespace: cellular_component
Definition: An endocytic patch that consists of an actin-containing structure found at the plasma membrane in cells; formed of networks of branched actin filaments that lie just beneath the plasma membrane and assemble, move, and disassemble rapidly. An example of this is the actin cortical patch found in Saccharomyces cerevisiae.
Synonyms: actin patch
obsolete muscle fiber (GO:0030484)
Namespace: cellular_component
Definition: OBSOLETE. The contractile fibers, composed of actin, myosin, and associated proteins, found in cells of smooth or striated muscle.
Synonyms: muscle fiber; muscle fibre
Comment: This term was made obsolete because a muscle fiber is a cell type rather than a cell component. To update annotations, consider the external ontology term 'muscle cell ; CL:0000187'.
smooth muscle contractile fiber (GO:0030485)
Namespace: cellular_component
Definition: The contractile fiber of smooth muscle cells.
smooth muscle dense body (GO:0030486)
Namespace: cellular_component
Definition: Electron-dense region associated with a smooth muscle contractile fiber.
inositol-4,5-bisphosphate 5-phosphatase activity (GO:0030487)
Namespace: molecular_function
Definition: Catalysis of the reaction: 1D-myo-inositol 4,5-bisphosphate + H2O = 1D-myo-inositol 4-phosphate + phosphate.
tRNA methylation (GO:0030488)
Namespace: biological_process
Definition: The posttranscriptional addition of methyl groups to specific residues in a tRNA molecule.
obsolete processing of 27S pre-rRNA (GO:0030489)
Namespace: biological_process
Definition: OBSOLETE. (Was not defined before being made obsolete).
Synonyms: processing of 27S pre-rRNA
Comment: This term was made obsolete because it was not defined and did not correspond to the production of a single specific mature rRNA product.
maturation of SSU-rRNA (GO:0030490)
Namespace: biological_process
Definition: Any process involved in the maturation of a precursor Small SubUnit (SSU) ribosomal RNA (rRNA) molecule into a mature SSU-rRNA molecule.
Synonyms: processing of 20S pre-rRNA; SSU-rRNA maturation
heteroduplex formation (GO:0030491)
Namespace: biological_process
Definition: The formation of a stable duplex DNA that contains one strand from each of the two recombining DNA molecules.
hemoglobin binding (GO:0030492)
Namespace: molecular_function
Definition: Binding to hemoglobin, an oxygen carrying, conjugated protein containing four heme groups and globin.
Synonyms: globin binding; haemoglobin binding
obsolete bacteriochlorophyll metabolic process (GO:0030493)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving a bacteriochlorophyll, any of the chlorophylls of photosynthetic bacteria. They differ structurally from the chlorophylls of higher plants.
Synonyms: bacteriochlorophyll metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
bacteriochlorophyll biosynthetic process (GO:0030494)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of a bacteriochlorophyll, any of the chlorophylls of photosynthetic bacteria. They differ structurally from the chlorophylls of higher plants.
Synonyms: bacteriochlorophyll anabolism; bacteriochlorophyll biosynthesis; bacteriochlorophyll formation; bacteriochlorophyll synthesis
bacteriochlorophyll catabolic process (GO:0030495)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of bacteriochlorophyll, any of the chlorophylls of photosynthetic bacteria. They differ structurally from the chlorophylls of higher plants.
Synonyms: bacteriochlorophyll breakdown; bacteriochlorophyll catabolism; bacteriochlorophyll degradation