LiteFold/GO huggingface dataset:
SBF transcription complex (GO:0033309)
Namespace: cellular_component
Definition: A protein complex that binds to the Swi4/6 cell cycle box (SCB) promoter element, consensus sequence CRCGAAA, and activates transcription during the G1/S transition of the cell cycle. In Saccharomyces, the complex contains a heterodimer of the DNA binding protein Swi4p and the activator Swi6p, and is associated with additional proteins known as Whi5p and Msa1p.
Synonyms: SBF complex
chlorophyll a catabolic process (GO:0033310)
Namespace: biological_process
Definition: The chemical reactions and pathways leading to the breakdown of chlorophyll a.
Synonyms: chlorophyll a breakdown; chlorophyll a catabolism; chlorophyll a degradation
chlorophyll a biosynthetic process via phytyl diphosphate (GO:0033311)
Namespace: biological_process
Definition: The chemical reactions and pathways leading to the formation of chlorophyll a, via the intermediate phytyl diphosphate.
Synonyms: chlorophyll a anabolism via phytyl diphosphate; chlorophyll a biosynthesis via phytyl diphosphate; chlorophyll a biosynthetic process via phytyl-PP; chlorophyll a formation via phytyl chlorophyll a formation via phytyl-PP; chlorophyll a synthesis via phytyl diphosphate
chlorophyll a biosynthetic process via geranylgeranyl-chlorophyll a (GO:0033312)
Namespace: biological_process
Definition: The chemical reactions and pathways leading to the formation of chlorophyll a, via the intermediate geranylgeranyl-chlorophyll a.
Synonyms: chlorophyll a anabolism via geranylgeranyl-chlorophyll a; chlorophyll a biosynthesis via geranylgeranyl-chlorophyll a; chlorophyll a formation via geranylgeranyl-chlorophyll a; chlorophyll a synthesis via geranylgeranyl-chlorophyll a
meiotic cell cycle checkpoint signaling (GO:0033313)
Namespace: biological_process
Definition: A signaling process that contributes to a meiotic cell cycle checkpoint that ensures accurate chromosome replication and segregation by preventing progression through a meiotic cell cycle until conditions are suitable for the cell to proceed to the next stage.
Synonyms: meiotic cell cycle checkpoint; signal transduction involved in meiotic cell cycle checkpoint
mitotic DNA replication checkpoint signaling (GO:0033314)
Namespace: biological_process
Definition: A signal transduction process that contributes to a mitotic DNA replication checkpoint.
Synonyms: mitotic cell cycle DNA replication checkpoint; mitotic DNA replication checkpoint; S-M checkpoint; S-M DNA replication checkpoint; S-phase checkpoint; signal transduction involved in mitotic DNA replication checkpoint; signal transduction involved in mitotic G2/M transition decatenation checkpoint; signal transduction involved in S-M checkpoint
meiotic G2/MI DNA replication checkpoint signaling (GO:0033315)
Namespace: biological_process
Definition: A signal transduction process that controls the G2/M1 transition of the meiotic cell cycle and prevents the initiation of nuclear division until DNA replication is complete.
Synonyms: meiotic cell cycle DNA replication checkpoint; meiotic G2/MI DNA replication checkpoint; signal transduction involved in meiotic DNA replication checkpoint
meiotic spindle assembly checkpoint signaling (GO:0033316)
Namespace: biological_process
Definition: A signal transduction process that contributes to a meiotic spindle assembly checkpoint, that delays the metaphase/anaphase transition of a meiotic cell cycle until the spindle is correctly assembled and chromosomes are attached to the spindle.
Synonyms: meiotic spindle assembly checkpoint; signal transduction involved in meiotic spindle assembly checkpoint
UDP-D-xylose metabolic process (GO:0033319)
Namespace: biological_process
Definition: The chemical reactions and pathways involving UDP-D-xylose, uridinediphosphoxylose, a substance composed of xylose in glycosidic linkage with uridine diphosphate.
Synonyms: UDP-D-xylose metabolism
obsolete homomethionine metabolic process (GO:0033321)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving homomethionine, a non-protein amino acid synthesized from methionine via chain elongation.
Synonyms: homomethionine metabolism
Comment: This term was obsoleted because it is an unnecessary grouping term.
L-homomethionine biosynthetic process (GO:0033322)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of L-homomethionine, a non-protein amino acid synthesized from L-methionine via chain elongation.
Synonyms: homomethionine anabolism; homomethionine biosynthesis; homomethionine biosynthetic process; homomethionine formation; homomethionine synthesis
choline biosynthetic process via CDP-choline (GO:0033323)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of choline (2-hydroxyethyltrimethylammonium), via the intermediate CDP-choline.
Synonyms: choline anabolism via CDP-choline; choline biosynthesis via CDP-choline; choline formation via CDP-choline; choline synthesis via CDP-choline
choline biosynthetic process via N-monomethylethanolamine (GO:0033324)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of choline (2-hydroxyethyltrimethylammonium), via the intermediate N-monomethylethanolamine.
Synonyms: choline anabolism via N-monomethylethanolamine; choline biosynthesis via N-monomethylethanolamine; choline formation via N-monomethylethanolamine; choline synthesis via N-monomethylethanolamine
choline biosynthetic process via phosphoryl-ethanolamine (GO:0033325)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of choline (2-hydroxyethyltrimethylammonium), via the intermediate phosphoryl-ethanolamine.
Synonyms: choline anabolism via phosphoryl-ethanolamine; choline biosynthesis via phosphoryl-ethanolamine; choline formation via phosphoryl-ethanolamine; choline synthesis via phosphoryl-ethanolamine
cerebrospinal fluid secretion (GO:0033326)
Namespace: biological_process
Definition: The regulated release of cerebrospinal fluid (CSF) from the choroid plexus of the lateral, third and fourth ventricles. The cerebrospinal fluid is a clear liquid that located within the ventricles, spinal canal, and subarachnoid spaces.
Synonyms: CSF secretion
Leydig cell differentiation (GO:0033327)
Namespace: biological_process
Definition: The process in which a relatively unspecialized cell acquires specialized structural and/or functional features of a Leydig cell. A Leydig cell is a testosterone-secreting cell in the interstitial area, between the seminiferous tubules, in the testis.
peroxisome membrane targeting sequence binding (GO:0033328)
Namespace: molecular_function
Definition: Binding to a peroxisomal membrane targeting sequence, any of several sequences of amino acids within a protein that can act as a signal for the localization of the protein into the peroxisome membrane.
Synonyms: mPTS binding; peroxisomal membrane protein (PMP) targeting signal (mPTS) binding; PMP targeting signal (mPTS) binding; PMP targeting signal binding
obsolete kaempferol O-glucoside metabolic process (GO:0033329)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving O-glucosylated derivatives of kaempferol.
Synonyms: kaempferol O-glucoside metabolism
Comment: This term was obsoleted because it is an unnecessary grouping term.
kaempferol O-glucoside biosynthetic process (GO:0033330)
Namespace: biological_process
Definition: The chemical reactions and pathways leading to the formation of O-glucosylated derivatives of kaempferol.
Synonyms: kaempferol O-glucoside anabolism; kaempferol O-glucoside biosynthesis; kaempferol O-glucoside formation; kaempferol O-glucoside synthesit
ent-kaurene metabolic process (GO:0033331)
Namespace: biological_process
Definition: The chemical reactions and pathways involving ent-kaur-16-ene. Ent-kaurene is a tetracyclic diterpenoid that is a precursor of several plant isoprenoids, including gibberellins.
Synonyms: ent-kaurene metabolism
ent-kaurene biosynthetic process (GO:0033332)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of ent-kaurene. Ent-kaurene is a tetracyclic diterpenoid that is a precursor of several plant isoprenoids, including gibberellins.
Synonyms: ent-kaurene anabolism; ent-kaurene biosynthesis; ent-kaurene formation; ent-kaurene synthesis
fin development (GO:0033333)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of a fin over time, from its formation to the mature structure.
fin morphogenesis (GO:0033334)
Namespace: biological_process
Definition: The process in which the anatomical structures of a fin are generated and organized.
anal fin development (GO:0033335)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the anal fin over time, from its formation to the mature structure.
caudal fin development (GO:0033336)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the caudal fin over time, from its formation to the mature structure.
dorsal fin development (GO:0033337)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the dorsal fin over time, from its formation to the mature structure.
medial fin development (GO:0033338)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of a medial fin over time, from its formation to the mature structure.
Synonyms: median fin development
pelvic fin development (GO:0033340)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the pelvic fin over time, from its formation to the mature structure.
obsolete regulation of collagen binding (GO:0033341)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of collagen binding.
Comment: This term was obsoleted because it represents a molecular function.
obsolete negative regulation of collagen binding (GO:0033342)
Namespace: biological_process
Definition: OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of collagen binding.
Synonyms: down regulation of collagen binding; down-regulation of collagen binding; downregulation of collagen binding; inhibition of collagen binding
Comment: This term was obsoleted because it represents a molecular function.
obsolete positive regulation of collagen binding (GO:0033343)
Namespace: biological_process
Definition: OBSOLETE. Any process that activates or increases the frequency, rate or extent of collagen binding.
Synonyms: activation of collagen binding; stimulation of collagen binding; up regulation of collagen binding; up-regulation of collagen binding; upregulation of collagen binding
Comment: This term was obsoleted because it represents a molecular function.
cholesterol efflux (GO:0033344)
Namespace: biological_process
Definition: The directed movement of cholesterol, cholest-5-en-3-beta-ol, out of a cell or organelle.
Synonyms: cholesterol export
obsolete L-asparagine catabolic process via L-aspartate (GO:0033345)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the breakdown of L-asparagine, via the intermediate L-aspartate.
Comment: This term was obsoleted because it represents a specific instance of a pathway that should be captured as a GO-CAM model.
obsolete L-asparagine catabolic process via 2-oxosuccinamate (GO:0033346)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the breakdown of L-asparagine, via the intermediate 2-oxosuccinamate.
Comment: This term was obsoleted because it represents a specific instance of a pathway that should be captured as a GO-CAM model.
tetrose biosynthetic process (GO:0033348)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of a tetrose, any monosaccharide with a chain of four carbon atoms in the molecule.
Synonyms: tetrose anabolism; tetrose biosynthesis; tetrose formation; tetrose synthesis
obsolete apiose metabolic process (GO:0033349)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving apiose, the branched tetrose 3-C-(hydroxymethyl)-D-glycero-tetrose.
Synonyms: apiose metabolism
Comment: This term was obsoleted because it is an unnecessary grouping term.
apiose biosynthetic process (GO:0033350)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of apiose, the branched tetrose 3-C-(hydroxymethyl)-D-glycero-tetrose.
Synonyms: apiose anabolism; apiose biosynthesis; apiose formation; apiose synthesis
obsolete UDP-D-apiose metabolic process (GO:0033351)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving UDP-D-apiose, uridinediphosphoapiose, a substance composed of apiose in glycosidic linkage with uridine diphosphate.
Synonyms: UDP-D-apiose metabolism
Comment: This term was obsoleted because it is an unnecessary grouping term.
UDP-D-apiose biosynthetic process (GO:0033352)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of UDP-D-apiose, uridinediphosphoapicose, a substance composed of apiose in glycosidic linkage with uridine diphosphate.
Synonyms: UDP-D-apiose anabolism; UDP-D-apiose biosynthesis; UDP-D-apiose formation; UDP-D-apiose synthesis
L-methionine cycle (GO:0033353)
Namespace: biological_process
Definition: A cyclic series of interconversions involving S-adenosyl-L-homocysteine, L-homocysteine, L-methionine and S-adenosyl-L-methionine (SAM). Couples utilization of the methyl group of SAM with recycling of the homocysteinyl group and regeneration of L-methionine.
Synonyms: activated methyl cycle; S-adenosylmethionine cycle; SAM cycle
chlorophyll cycle (GO:0033354)
Namespace: biological_process
Definition: A cyclic series of interconversions involving chlorophyll a, chlorophyll b and several chlorophyllide intermediates.
UDP-L-arabinose metabolic process (GO:0033356)
Namespace: biological_process
Definition: The chemical reactions and pathways involving UDP-L-arabinose, uridinediphosphoarabinose, a substance composed of arabinose in glycosidic linkage with uridine diphosphate.
Synonyms: UDP-L-arabinose metabolism
L-arabinose biosynthetic process (GO:0033357)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of L-arabinose, arabino-pentose.
Synonyms: L-arabinose anabolism; L-arabinose biosynthesis; L-arabinose formation; L-arabinose synthesis
UDP-L-arabinose biosynthetic process (GO:0033358)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of UDP-L-arabinose, uridinediphosphoarabinose, a substance composed of arabinose in glycosidic linkage with uridine diphosphate.
Synonyms: UDP-L-arabinose anabolism; UDP-L-arabinose biosynthesis; UDP-L-arabinose formation; UDP-L-arabinose synthesis
obsolete L-lysine biosynthetic process via diaminopimelate and N-succinyl-2-amino-6-ketopimelate (GO:0033359)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of lysine, via the intermediates diaminopimelate and N-succinyl-2-amino-6-ketopimelate; in this pathway tetrahydrodipicolinate is converted to meso-diaminopimelate in four enzymatic steps.
Synonyms: lysine anabolism via diaminopimelate and N-succinyl-2-amino-6-ketopimelate; lysine biosynthesis via diaminopimelic acid and N-succinyl-2-amino-6-ketopimelate; lysine biosynthetic process via diaminopimelic acid and N-succinyl-2-amino-6-ketopimelate; lysine formation via diaminopimelate and N-succinyl-2-amino-6-ketopimelate; lysine synthesis via diaminopimelate and N-succinyl-2-amino-6-ketopimelate
Comment: The reason for obsoletion is that this term represents a GO-CAM model.
obsolete L-lysine biosynthetic process via diaminopimelate and L-2-acetamido-6-oxoheptanedioate (GO:0033360)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of lysine, via the intermediates diaminopimelate and L-2-acetamido-6-oxoheptanedioate; in this pathway tetrahydrodipicolinate is converted to meso-diaminopimelate in four enzymatic steps.
Synonyms: lysine anabolism via diaminopimelate and L-2-acetamido-6-oxoheptanedioate; lysine biosynthesis via diaminopimelic acid and L-2-acetamido-6-oxoheptanedioate; lysine biosynthetic process via diaminopimelic acid and L-2-acetamido-6-oxoheptanedioate; lysine formation via diaminopimelate and L-2-acetamido-6-oxoheptanedioate; lysine synthesis via diaminopimelate and L-2-acetamido-6-oxoheptanedioate
Comment: The reason for obsoletion is that this term represents a GO-CAM model.
obsolete L-lysine biosynthetic process via diaminopimelate, dehydrogenase pathway (GO:0033361)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of lysine, via the intermediate diaminopimelate; in this pathway tetrahydrodipicolinate is converted to meso-diaminopimelate in a single enzymatic step.
Synonyms: lysine anabolism via diaminopimelate, dehydrogenase pathway; lysine biosynthesis via diaminopimelic acid, dehydrogenase pathway; lysine formation via diaminopimelate, dehydrogenase pathway; lysine synthesis via diaminopimelate, dehydrogenase pathway
Comment: The reason for obsoletion is that this term represents a GO-CAM model.
secretory granule organization (GO:0033363)
Namespace: biological_process
Definition: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a secretory granule. A secretory granule is a small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion.
Synonyms: secretory granule organisation; secretory granule organization and biogenesis
mast cell secretory granule organization (GO:0033364)
Namespace: biological_process
Definition: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a secretory granule in a mast cell. A secretory granule is a small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion.
Synonyms: mast cell secretory granule maturation; mast cell secretory granule organisation; mast cell secretory granule organization and biogenesis
protein localization to secretory granule (GO:0033366)
Namespace: biological_process
Definition: A process in which a protein is transported to, or maintained in, a location within a secretory granule.
Synonyms: protein localisation in secretory granule; protein localization in secretory granule
protein localization to mast cell secretory granule (GO:0033367)
Namespace: biological_process
Definition: A process in which a protein is transported to, or maintained in, a location within a secretory granule in a mast cell.
Synonyms: protein localisation in mast cell secretory granule; protein localization in mast cell secretory granule
protease localization to mast cell secretory granule (GO:0033368)
Namespace: biological_process
Definition: Any process in which a protease is transported to, or maintained in, a location within a secretory granule in a mast cell.
Synonyms: protease localisation in mast cell secretory granule; protease localization in mast cell secretory granule
establishment of protein localization to mast cell secretory granule (GO:0033369)
Namespace: biological_process
Definition: The directed movement of a protein to a location within a secretory granule in a mast cell.
Synonyms: establishment of protein localisation in mast cell secretory granule; establishment of protein localization in mast cell secretory granule
maintenance of protein location in mast cell secretory granule (GO:0033370)
Namespace: biological_process
Definition: A process in which a protein is maintained in a secretory granule in a mast cell and prevented from moving elsewhere.
Synonyms: maintenance of protein localization in mast cell secretory granule; mast cell protein retention
T cell secretory granule organization (GO:0033371)
Namespace: biological_process
Definition: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a secretory granule in a T cell. A secretory granule is a small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion.
Synonyms: T cell secretory granule organisation; T cell secretory granule organization and biogenesis; T lymphocyte secretory granule organization; T-cell secretory granule organization; T-lymphocyte secretory granule maturation; T-lymphocyte secretory granule organization
establishment of protease localization to mast cell secretory granule (GO:0033372)
Namespace: biological_process
Definition: The directed movement of a protease to a location within a secretory granule in a mast cell.
Synonyms: establishment of protease localisation in mast cell secretory granule; establishment of protease localization in mast cell secretory granule
maintenance of protease location in mast cell secretory granule (GO:0033373)
Namespace: biological_process
Definition: A process in which a protease is maintained in a secretory granule in a mast cell and prevented from moving elsewhere.
Synonyms: maintenance of protease localization in mast cell secretory granule; mast cell protease retention
protein localization to T cell secretory granule (GO:0033374)
Namespace: biological_process
Definition: A process in which a protein is transported to, or maintained in, a location within a secretory granule in a T cell.
Synonyms: protein localisation in T cell secretory granule; protein localization in T cell secretory granule; protein localization in T lymphocyte secretory granule; protein localization in T-cell secretory granule; protein localization in T-lymphocyte secretory granule
establishment of protein localization to T cell secretory granule (GO:0033376)
Namespace: biological_process
Definition: The directed movement of a protein to a location within a secretory granule in a T cell.
Synonyms: establishment of protein localisation in T cell secretory granule; establishment of protein localization in T cell secretory granule; establishment of protein localization in T lymphocyte secretory granule; establishment of protein localization in T-cell secretory granule; establishment of protein localization in T-lymphocyte secretory granule
maintenance of protein location in T cell secretory granule (GO:0033377)
Namespace: biological_process
Definition: A process in which a protein is maintained in a secretory granule in a T cell and prevented from moving elsewhere.
Synonyms: maintenance of protein localization in T cell secretory granule; maintenance of protein localization in T lymphocyte secretory granule; maintenance of protein localization in T-cell secretory granule; maintenance of protein localization in T-lymphocyte secretory granule
establishment of protease localization to T cell secretory granule (GO:0033378)
Namespace: biological_process
Definition: The directed movement of a protease to a location within a secretory granule in a T cell.
Synonyms: establishment of protease localisation in T cell secretory granule; establishment of protease localization in T cell secretory granule; establishment of protease localization in T lymphocyte secretory granule; establishment of protease localization in T-cell secretory granule; establishment of protease localization in T-lymphocyte secretory granule