LiteFold/GO huggingface dataset:
obsolete multi-organism toxin transport (GO:1990967)
Namespace: biological_process
Definition: OBSOLETE. The directed movement of a toxin into, out of or within a cell, or between cells where two or more organisms of the same or different species are involved.
Synonyms: typhoid toxin transport
Comment: This term was obsoleted because there is no evidence that this process exists.
modulation by host of RNA binding by virus (GO:1990968)
Namespace: biological_process
Definition: A process in which a host organism modulates the frequency, rate or extent of a viral gene product binding to RNA.
Synonyms: modulation by host of viral protein:RNA interaction
Comment: Note that the bound RNA may originate from the virus or another organism, including the host.
obsolete modulation by host of viral RNA-binding transcription factor activity (GO:1990969)
Namespace: biological_process
Definition: OBSOLETE. A process in which a host organism modulates the frequency, rate or extent of the activity of a viral RNA-binding transcription factor.
Synonyms: modulation by host of viral Tat activity
Comment: This term was obsoleted because it represents a molecular function.
trans-activation response element binding (GO:1990970)
Namespace: molecular_function
Definition: Binding to a trans-activation response (TAR) element, a hairpin RNA structure located at the 5' end of all HIV-1 transcripts, and which is required for trans-activation of a viral promoter.
Synonyms: TAR binding
EMILIN complex (GO:1990971)
Namespace: cellular_component
Definition: The elastin microfibril interface located protein (EMILINs) are glycoprotein complexes of the C1q/TNF superfamily characterized by an N-terminal EMI domain. EMILIN homotrimers assemble to form supramolecular EMILIN structures.
Synonyms: Elastic microfibrillar interface 1 complex; Elastic microfibrillar interface 2 complex; EMILIN-1 complex; EMILIN-2 complex
multimerin complex (GO:1990972)
Namespace: cellular_component
Definition: Glycoprotein complex of the C1q/TNF superfamily involved in cell adhesion. A homotrimer that will combine to form supramolecular Multimerin structures.
Synonyms: Elastic microfibrillar interface 3 complex; Elastic microfibrillar interface 4 complex; EMILIN-3 complex; EMILIN-4 complex; Multimerin-1 complex; Multimerin-2 complex; p155 complex; Platelet glycoprotein Ia* complex
transmembrane actin-associated (TAN) line (GO:1990973)
Namespace: cellular_component
Definition: A linear array of nuclear envelope membrane proteins composed of nesprin-2G and SUN2, which couple the nucleus to moving actin cables, resulting in rearward nuclear transport (away from the leading edge).
Synonyms: TAN line
actin-dependent nuclear migration (GO:1990974)
Namespace: biological_process
Definition: The process whereby the centrosome is held at the cell center while the nucleus moves to the cell rear by actin retrograde flow resulting in the position of the centrosome between the nucleus and the leading edge of the cell.
Synonyms: actin-dependent nuclear movement
protein transport along microtubule to mitotic spindle pole body (GO:1990976)
Namespace: biological_process
Definition: The directed movement of a protein along a microtubule to the mitotic spindle pole body, mediated by motor proteins.
obsolete negative regulation of mitotic DNA replication initiation from late origin (GO:1990977)
Namespace: biological_process
Definition: OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of firing from a late origin of replication involved in mitotic DNA replication.
Comment: This term was obsoleted at the TermGenie Gatekeeper stage.
obsolete response to viscosity (GO:1990978)
Namespace: biological_process
Definition: OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a viscosity stimulus.
Comment: This term was obsoleted at the TermGenie Gatekeeper stage.
obsolete copper ion transport across blood-brain barrier (GO:1990979)
Namespace: biological_process
Definition: OBSOLETE. The directed movement of copper ions passing through the blood-brain barrier.
Synonyms: copper ion transport across BBB
Comment: This term was obsoleted at the TermGenie Gatekeeper stage.
obsolete copper ion transport across blood-CSF barrier (GO:1990980)
Namespace: biological_process
Definition: OBSOLETE. The directed movement of copper ions passing through the blood-cerebrospinal fluid barrier.
Synonyms: copper ion transport across BCB; copper ion transport across blood-cerebrospinal fluid barrier
Comment: This term was obsoleted at the TermGenie Gatekeeper stage.
obsolete Immune memory response (GO:1990982)
Namespace: biological_process
Definition: OBSOLETE. The immune response against a previously encountered antigen being quicker and quantitatively better compared with the primary response.
Comment: This term was obsoleted at the TermGenie Gatekeeper stage.
regulation of translational initiation by tRNA modification (GO:1990983)
Namespace: biological_process
Definition: A process in which translation initiation is regulated by post-translation modifications of a tRNA molecule.
Synonyms: tRNA demethylation
tRNA demethylase activity (GO:1990984)
Namespace: molecular_function
Definition: Catalysis of the removal of a methyl group from one or more positions within a tRNA molecule.
obsolete apoptosis in response to oxidative stress (GO:1990985)
Namespace: biological_process
Definition: OBSOLETE. Any biological process that results in permanent cessation of all vital functions of a cell upon exposure to oxidative stress.
Comment: This term was obsoleted at the TermGenie Gatekeeper stage.
DNA recombinase disassembly (GO:1990986)
Namespace: biological_process
Definition: The disaggregation of a DNA recombinase complex into its constituent strand exchange proteins (recombinases).
Synonyms: Rad51 nucleoprotein filament disassembly
regulation of DNA damage checkpoint (GO:2000001)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of a DNA damage checkpoint.
Synonyms: regulation of DNA damage response, signal transduction resulting in cell cycle arrest
negative regulation of DNA damage checkpoint (GO:2000002)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of a DNA damage checkpoint.
Synonyms: negative regulation of DNA damage response, signal transduction resulting in cell cycle arrest
positive regulation of DNA damage checkpoint (GO:2000003)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of a DNA damage checkpoint.
Synonyms: positive regulation of DNA damage response, signal transduction resulting in cell cycle arrest
regulation of metanephric S-shaped body morphogenesis (GO:2000004)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of metanephric S-shaped body morphogenesis.
negative regulation of metanephric S-shaped body morphogenesis (GO:2000005)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of metanephric S-shaped body morphogenesis.
regulation of metanephric comma-shaped body morphogenesis (GO:2000006)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of metanephric comma-shaped body morphogenesis.
negative regulation of metanephric comma-shaped body morphogenesis (GO:2000007)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of metanephric comma-shaped body morphogenesis.
regulation of protein localization to cell surface (GO:2000008)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of protein localization to the cell surface.
Synonyms: regulation of protein localisation at cell surface; regulation of protein localization at cell surface
negative regulation of protein localization to cell surface (GO:2000009)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of protein localization to the cell surface.
Synonyms: negative regulation of protein localisation at cell surface; negative regulation of protein localization at cell surface
regulation of auxin polar transport (GO:2000012)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of auxin polar transport.
obsolete regulation of arginine biosynthetic process via ornithine (GO:2000013)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of arginine biosynthetic process via ornithine.
Synonyms: regulation of arginine anabolism via ornithine; regulation of arginine formation via ornithine; regulation of arginine synthesis via ornithine
Comment: The reason for obsoletion is that these terms represent GO-CAM models.
regulation of endosperm development (GO:2000014)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of endosperm development.
regulation of determination of dorsal identity (GO:2000015)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of determination of dorsal identity.
Synonyms: regulation of determination of adaxial identity
negative regulation of determination of dorsal identity (GO:2000016)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of determination of dorsal identity.
Synonyms: negative regulation of determination of adaxial identity
positive regulation of determination of dorsal identity (GO:2000017)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of determination of dorsal identity.
Synonyms: positive regulation of determination of adaxial identity
regulation of male gonad development (GO:2000018)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of male gonad development.
Synonyms: regulation of testicular development; regulation of testis development
negative regulation of male gonad development (GO:2000019)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of male gonad development.
Synonyms: negative regulation of testicular development; negative regulation of testis development
positive regulation of male gonad development (GO:2000020)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of male gonad development.
Synonyms: positive regulation of testicular development; positive regulation of testis development
regulation of jasmonic acid mediated signaling pathway (GO:2000022)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of jasmonic acid mediated signaling pathway.
Synonyms: regulation of jasmonic acid mediated signalling pathway
regulation of lateral root development (GO:2000023)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of lateral root development.
regulation of leaf development (GO:2000024)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of leaf development.
regulation of leaf formation (GO:2000025)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of leaf formation.
regulation of multicellular organismal development (GO:2000026)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of multicellular organismal development.
regulation of animal organ morphogenesis (GO:2000027)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of animal organ morphogenesis.
Synonyms: regulation of histogenesis and organogenesis
regulation of proanthocyanidin biosynthetic process (GO:2000029)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of proanthocyanidin biosynthetic process.
Synonyms: regulation of proanthocyanidin anabolism; regulation of proanthocyanidin biosynthesis; regulation of proanthocyanidin formation; regulation of proanthocyanidin synthesis
regulation of response to red or far red light (GO:2000030)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of response to red or far red light.
regulation of salicylic acid mediated signaling pathway (GO:2000031)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of salicylic acid mediated signaling pathway.
Synonyms: regulation of salicylic acid mediated signalling pathway
regulation of secondary shoot formation (GO:2000032)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of secondary shoot formation.
Synonyms: regulation of auxiliary shoot formation; regulation of axillary shoot formation; regulation of axillary shoot system formation; regulation of shoot branching
regulation of seed maturation (GO:2000034)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of seed maturation.
regulation of stem cell division (GO:2000035)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of stem cell division.
Synonyms: regulation of stem cell renewal
regulation of stem cell population maintenance (GO:2000036)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of stem cell population maintenance.
Synonyms: regulation of maintenance of pluripotency
regulation of stomatal complex patterning (GO:2000037)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of stomatal complex patterning.
regulation of stomatal complex development (GO:2000038)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of stomatal complex development.
obsolete regulation of planar cell polarity pathway involved in axis elongation (GO:2000040)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of planar cell polarity pathway involved in axis elongation.
Comment: The reason for obsoletion is that this term should be captured using GO-CAM or extensions.
obsolete negative regulation of planar cell polarity pathway involved in axis elongation (GO:2000041)
Namespace: biological_process
Definition: OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of planar cell polarity pathway involved in axis elongation.
Comment: The reason for obsoletion is that this term should be captured using GO-CAM or extensions.
negative regulation of double-strand break repair via homologous recombination (GO:2000042)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of double-strand break repair via homologous recombination.
Synonyms: negative regulation of HDR; negative regulation of homologous recombinational repair; negative regulation of homology-directed repair; negative regulation of HRR; negative regulation of Rad51-dependent recombinational repair; negative regulation of Rhp51-dependent recombinational repair
negative regulation of cardiac cell fate specification (GO:2000044)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of cardiac cell fate specification.
regulation of G1/S transition of mitotic cell cycle (GO:2000045)
Namespace: biological_process
Definition: Any signaling pathway that modulates the activity of a cell cycle cyclin-dependent protein kinase to modulate the switch from G1 phase to S phase of the mitotic cell cycle.
Comment: Note that this process is usually achieved by the regulation of the G1 cyclin-dependent protein kinase, consider annotating to the child term 'regulation of cyclin-dependent protein kinase activity involved in G1/S ; GO:0031657'.
obsolete regulation of G2 phase of mitotic cell cycle (GO:2000046)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of G2 phase of mitotic cell cycle.
Synonyms: regulation of G2 phase of mitotic cell cycle
Comment: This term was made obsolete because we felt that phases themselves are not being regulated, it's rather the transitions between phases. If you are trying to make an annotation to x phase, it is likely that the correct process is 'regulation of x/y phase transiition.
regulation of cell-cell adhesion mediated by cadherin (GO:2000047)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of cell-cell adhesion mediated by cadherin.
negative regulation of cell-cell adhesion mediated by cadherin (GO:2000048)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of cell-cell adhesion mediated by cadherin.
positive regulation of cell-cell adhesion mediated by cadherin (GO:2000049)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of cell-cell adhesion mediated by cadherin.
regulation of non-canonical Wnt signaling pathway (GO:2000050)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of non-canonical Wnt signaling pathway.
Synonyms: regulation of beta-catenin-independent Wnt receptor signaling pathway; regulation of non-canonical Wnt receptor signaling pathway; regulation of non-canonical Wnt receptor signalling pathway; regulation of non-canonical Wnt-activated signaling pathway
negative regulation of non-canonical Wnt signaling pathway (GO:2000051)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of non-canonical Wnt signaling pathway.
Synonyms: negative regulation of beta-catenin-independent Wnt receptor signaling pathway; negative regulation of non-canonical Wnt receptor signaling pathway; negative regulation of non-canonical Wnt receptor signalling pathway; negative regulation of non-canonical Wnt-activated signaling pathway
positive regulation of non-canonical Wnt signaling pathway (GO:2000052)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of non-canonical Wnt-activated signaling pathway.
Synonyms: positive regulation of beta-catenin-independent Wnt receptor signaling pathway; positive regulation of non-canonical Wnt receptor signaling pathway; positive regulation of non-canonical Wnt receptor signalling pathway; positive regulation of non-canonical Wnt-activated signaling pathway
obsolete regulation of Wnt signaling pathway involved in dorsal/ventral axis specification (GO:2000053)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of Wnt signaling pathway involved in dorsal/ventral axis specification.
Synonyms: regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification; regulation of Wnt receptor signalling pathway involved in dorsal/ventral axis specification; regulation of Wnt-activated signaling pathway involved in dorsal/ventral axis specification
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete negative regulation of Wnt signaling pathway involved in dorsal/ventral axis specification (GO:2000054)
Namespace: biological_process
Definition: OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of Wnt signaling pathway involved in dorsal/ventral axis specification.
Synonyms: negative regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification; negative regulation of Wnt receptor signalling pathway involved in dorsal/ventral axis specification; negative regulation of Wnt-activated signaling pathway involved in dorsal/ventral axis specification
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete positive regulation of Wnt signaling pathway involved in dorsal/ventral axis specification (GO:2000055)
Namespace: biological_process
Definition: OBSOLETE. Any process that activates or increases the frequency, rate or extent of Wnt signaling pathway involved in dorsal/ventral axis specification.
Synonyms: positive regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification; positive regulation of Wnt receptor signalling pathway involved in dorsal/ventral axis specification; positive regulation of Wnt-activated signaling pathway involved in dorsal/ventral axis specification
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete regulation of Wnt signaling pathway involved in digestive tract morphogenesis (GO:2000056)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of Wnt signaling pathway involved in digestive tract morphogenesis.
Synonyms: regulation of Wnt receptor signaling pathway involved in digestive tract morphogenesis; regulation of Wnt receptor signalling pathway involved in digestive tract morphogenesis; regulation of Wnt-activated signaling pathway involved in digestive tract morphogenesis
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete negative regulation of Wnt signaling pathway involved in digestive tract morphogenesis (GO:2000057)
Namespace: biological_process
Definition: OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of Wnt signaling pathway involved in digestive tract morphogenesis.
Synonyms: negative regulation of Wnt receptor signaling pathway involved in digestive tract morphogenesis; negative regulation of Wnt receptor signalling pathway involved in digestive tract morphogenesis; negative regulation of Wnt-activated signaling pathway involved in digestive tract morphogenesis
Comment: This term was obsoleted because it represents a GO-CAM model.
regulation of ubiquitin-dependent protein catabolic process (GO:2000058)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of ubiquitin-dependent protein catabolic process.
Synonyms: regulation of myofibrillar protein ubiquitination during ubiquitin-dependent protein breakdown; regulation of myofibrillar protein ubiquitination during ubiquitin-dependent protein catabolic process; regulation of myofibrillar protein ubiquitination during ubiquitin-dependent protein catabolism; regulation of myofibrillar protein ubiquitination during ubiquitin-dependent protein degradation; regulation of protein degradation tagging activity; regulation of protein ubiquitination during ubiquitin-dependent protein breakdown; regulation of protein ubiquitination during ubiquitin-dependent protein catabolic process; regulation of protein ubiquitination during ubiquitin-dependent protein catabolism; regulation of protein ubiquitination during ubiquitin-dependent protein degradation; regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process; regulation of protein ubiquitinylation during ubiquitin-dependent protein catabolic process; regulation of protein ubiquitinylation during ubiquitin-dependent protein catabolism; regulation of protein ubiquitylation during ubiquitin-dependent protein catabolic process; regulation of protein ubiquitylation during ubiquitin-dependent protein catabolism