LiteFold/GO huggingface dataset:
phloem glucosinolate loading (GO:0090449)
Namespace: biological_process
Definition: The process of loading glucosinolates into the sieve tube or companion cell of the phloem for long distance transport from source to sink.
cotyledon boundary formation (GO:0090451)
Namespace: biological_process
Definition: The process in which boundaries between a cotyledon and the surrounding tissue are established and maintained.
aspartate transmembrane import into vacuole (GO:0090453)
Namespace: biological_process
Definition: The directed movement of aspartate into the vacuole across the vacuolar membrane.
Synonyms: vacuolar aspartate import
glutamate transmembrane import into vacuole (GO:0090454)
Namespace: biological_process
Definition: The directed movement of glutamate into the vacuole across the vacuolar membrane.
Synonyms: vacuolar glutamate import
ornithine transmembrane import into vacuole (GO:0090455)
Namespace: biological_process
Definition: The directed movement of ornithine into the vacuole across the vacuolar membrane.
Synonyms: vacuolar ornithine import
intracellular aspartate homeostasis (GO:0090459)
Namespace: biological_process
Definition: A homeostatic process involved in the maintenance of a steady state level of aspartate within a cell.
Synonyms: aspartate homeostasis; cellular aspartate homeostasis
intracellular threonine homeostasis (GO:0090460)
Namespace: biological_process
Definition: A homeostatic process involved in the maintenance of a steady state level of threonine within a cell.
Synonyms: cellular threonine homeostasis; threonine homeostasis
intracellular glutamate homeostasis (GO:0090461)
Namespace: biological_process
Definition: A homeostatic process involved in the maintenance of a steady state level of glutamate within a cell.
Synonyms: cellular glutamate homeostasis; glutamate homeostasis
intracellular ornithine homeostasis (GO:0090462)
Namespace: biological_process
Definition: A homeostatic process involved in the maintenance of a steady state level of orthinine within a cell.
Synonyms: cellular ornithine homeostasis; ornithine homeostasis
intracellular lysine homeostasis (GO:0090463)
Namespace: biological_process
Definition: A homeostatic process involved in the maintenance of a steady state level of lysine within a cell.
Synonyms: cellular lysine homeostasis; lysine homeostasis
intracellular histidine homeostasis (GO:0090464)
Namespace: biological_process
Definition: A homeostatic process involved in the maintenance of a steady state level of histidine within a cell.
Synonyms: cellular histidine homeostasis; histidine homeostasis
intracellular arginine homeostasis (GO:0090465)
Namespace: biological_process
Definition: A homeostatic process involved in the maintenance of a steady state level of arginine within a cell.
Synonyms: arginine homeostasis; cellular arginine homeostasis
shoot organ boundary specification (GO:0090470)
Namespace: biological_process
Definition: The process in which the basal boundary between the stem and both vegetative and reproductive organs are established and maintained.
9,15,9'-tri-cis-zeta-carotene isomerase activity (GO:0090471)
Namespace: molecular_function
Definition: Catalysis of the reaction: 9,9',15-tri-cis-zeta-carotene = 9,9'-di-cis-zeta-carotene.
Synonyms: 9,15,9'-tricis-zeta-carotene cis-trans-isomerase
dibasic protein processing (GO:0090472)
Namespace: biological_process
Definition: Any protein processing achieved by the cleavage of a peptide bond after two basic amino acids within a protein.
lys-arg specific dibasic protein processing (GO:0090473)
Namespace: biological_process
Definition: Any protein processing achieved by the cleavage of a peptide bond after a lysine-arginine amino acid residue combination within a protein.
arg-arg specific dibasic protein processing (GO:0090474)
Namespace: biological_process
Definition: Any protein processing achieved by the cleavage of a peptide bond after two consecutive arginine amino acid residues within a protein.
lys-lys specific dibasic protein processing (GO:0090475)
Namespace: biological_process
Definition: Any protein processing achieved by the cleavage of a peptide bond after two consecutive lysine amino acid residues within a protein.
pyrimidine nucleotide-sugar transmembrane transport (GO:0090481)
Namespace: biological_process
Definition: The process in which a pyrimidine nucleotide-sugar is transported across a membrane. Pyrimidine nucleotide-sugars are pyrimidine nucleotides in glycosidic linkage with a monosaccharide or monosaccharide derivative.
Synonyms: pyrimidine nucleotide-sugar membrane transport; pyrimidine nucleotide-sugar transport
Comment: Note that this term is not intended for use in annotating lateral movement within membranes.
vitamin transmembrane transporter activity (GO:0090482)
Namespace: molecular_function
Definition: Enables the transfer of a vitamin from one side of a membrane to the other.
Synonyms: vitamin or cofactor transporter activity; vitamin transporter activity
phosphatidylglycerol-phosphatidylethanolamine phosphatidyltransferase activity (GO:0090483)
Namespace: molecular_function
Definition: Catalysis of the reaction: phosphatidylglycerol + phosphatidylethanolamine = cardiolipin + ethanolamine.
Synonyms: cardiolipin synthase
obsolete chromosome number maintenance (GO:0090485)
Namespace: biological_process
Definition: OBSOLETE. The maintenance of the standard number of chromosomes in a cell.
Synonyms: diploidization; haploidization
Comment: The reason for obsoletion is that this term represents a phenotype, and could be captured by other terms such as GO:0007059 chromosome segregation or GO:1903467 negative regulation of mitotic DNA replication initiation.
small RNA 2'-O-ribose methyltransferase activity (GO:0090486)
Namespace: molecular_function
Definition: Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to the oxygen atom of a nucleoside residue in a small RNA molecule. Reaction: S-adenosyl-L-methionine + small RNA = S-adenosyl-L-homocysteine + small RNA containing a 3'-terminal 2'-O-methylnucleotide.
Synonyms: small RNA 2'-O-methyltransferase; small RNA 2'-O-methyltransferase activity
secondary metabolite catabolic process (GO:0090487)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of secondary metabolites, the compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon.
Synonyms: secondary metabolite breakdown; secondary metabolite catabolism; secondary metabolite degradation
tryptophan N-monooxygenase activity (GO:0090489)
Namespace: molecular_function
Definition: Catalyzes the multi-step reaction: L-tryptophan + 2 O2 + 2 reduced [NADPH--hemoprotein reductase] = (E)-(indol-3-yl)acetaldehyde oxime + CO2 + 2 H+ + 3 H2O + 2 oxidized [NADPH--hemoprotein reductase].
Synonyms: L-tryptophan,NADPH:oxygen oxidoreductase (N-hydroxylating, decarboxylating); tryptophan N-hydroxylase activity
obsolete L-tryptophan,NADPH:oxygen oxidoreductase (N-hydroxylating) (GO:0090490)
Namespace: molecular_function
Definition: OBSOLETE. Catalyzes the reaction: L-Tryptophan + Oxygen + NADPH + H+ = N-Hydroxy-L-tryptophan + NADP+ + H2O.
Comment: This term was obsoleted because it represents a sub-reaction of tryptophan N-monooxygenase activity ; GO:0090489.
obsolete N-hydroxy-L-tryptophan,NADPH:oxygen oxidoreductase (N-hydroxylating) (GO:0090491)
Namespace: molecular_function
Definition: OBSOLETE. Catalyzes the reaction: N-Hydroxy-L-tryptophan + Oxygen + NADPH + H+ = N,N-Dihydroxy-L-tryptophan + NADP+ + H2O.
Comment: This term was obsoleted because it represents a sub-reaction of tryptophan N-monooxygenase activity ; GO:0090489.
catecholamine uptake (GO:0090493)
Namespace: biological_process
Definition: The directed movement of catecholamine into a cell.
dopamine uptake (GO:0090494)
Namespace: biological_process
Definition: The directed movement of dopamine into a cell.
low-density lipoprotein particle disassembly (GO:0090495)
Namespace: biological_process
Definition: The disaggregation of a low-density lipoprotein particle into its constituent components.
obsolete mesenchyme migration involved in limb bud formation (GO:0090496)
Namespace: biological_process
Definition: OBSOLETE. The migration of mesenchymal tissue that contributes to the formation of a limb bud.
Comment: This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.
mesenchymal cell migration (GO:0090497)
Namespace: biological_process
Definition: The orderly movement of a mesenchymal cell from one site to another, often during the development of a multicellular organism.
extrinsic component of Golgi membrane (GO:0090498)
Namespace: cellular_component
Definition: The component of a Golgi membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.
Synonyms: extrinsic to Golgi membrane
pimelyl-[acyl-carrier protein] methyl ester esterase activity (GO:0090499)
Namespace: molecular_function
Definition: Catalysis of the reaction: 6-carboxyhexanoyl-[ACP] methyl ester + H2O = 6-carboxyhexanoyl-[ACP] + H+ + methanol.
Synonyms: pimelyl-[acyl-carrier protein] methyl ester hydrolase activity
Comment: Note that while this reaction occurs on a modified protein (acyl-carrier protein), the ACP only acts as a carrier that later releases the end product.
endocardial cushion to mesenchymal transition (GO:0090500)
Namespace: biological_process
Definition: A transition where an endocardial cushion cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell.
obsolete RNA phosphodiester bond hydrolysis (GO:0090501)
Namespace: biological_process
Definition: OBSOLETE. The RNA metabolic process in which the phosphodiester bonds between ribonucleotides are cleaved by hydrolysis.
Comment: This term was obsoleted because it represents a molecular function.
obsolete RNA phosphodiester bond hydrolysis, exonucleolytic (GO:0090503)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving the hydrolysis of terminal 3',5'-phosphodiester bonds in one or two strands of ribonucleotides.
Comment: This term was obsoleted because it represents a molecular function.
epiboly (GO:0090504)
Namespace: biological_process
Definition: The expansion of one cell sheet over other cells or yolk.
epiboly involved in wound healing (GO:0090505)
Namespace: biological_process
Definition: The expansion of one cell sheet over other cells involved in wound healing.
axillary shoot meristem initiation (GO:0090506)
Namespace: biological_process
Definition: A developmental process that results in the initiation of an axillary shoot meristem. An axillary shoot meristem is a shoot meristem formed in the axil of a leaf.
Synonyms: axillary bud meristem initiation
obsolete phenylethylamine biosynthetic process involved in synaptic transmission (GO:0090508)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of phenylethylamine that contribute to synaptic transmission.
Comment: This term was obsoleted because it is an unnecessary grouping class.
periclinal cell division (GO:0090511)
Namespace: biological_process
Definition: A cell division process where the division plane is parallel to the surface of the organ. It creates a new cell layer or cell file.
eisosome membrane domain/MCC (GO:0090512)
Namespace: cellular_component
Definition: A plasma membrane part that is composed of a furrow-like plasma membrane domain and associated integral transmembrane proteins.
L-histidine transmembrane import into vacuole (GO:0090513)
Namespace: biological_process
Definition: The directed movement of L-histidine into the vacuole across the vacuolar membrane.
Synonyms: histidine transmembrane import into vacuole; vacuolar histidine import
L-tyrosine transmembrane import into vacuole (GO:0090514)
Namespace: biological_process
Definition: The directed movement of L-tyrosine into the vacuole across the vacuolar membrane.
L-glutamate transmembrane import into vacuole (GO:0090515)
Namespace: biological_process
Definition: The directed movement of L-glutamate into the vacuole across the vacuolar membrane.
L-serine transmembrane import into vacuole (GO:0090516)
Namespace: biological_process
Definition: The directed movement of L-serine into the vacuole across the vacuolar membrane.
L-lysine transmembrane import into vacuole (GO:0090517)
Namespace: biological_process
Definition: The directed movement of L-lysine into the vacuole across the vacuolar membrane.
Synonyms: lysine transmembrane import into vacuole; vacuolar lysine import
L-arginine transmembrane import into vacuole (GO:0090518)
Namespace: biological_process
Definition: The directed movement of L-arginine into the vacuole across the vacuolar membrane.
Synonyms: arginine transmembrane import into vacuole; vacuolar arginine import
anoxia protection (GO:0090519)
Namespace: biological_process
Definition: Any process in which an organism or cell protects itself from anoxia, which may also result in resistance to repeated exposure to anoxia.
sphingolipid mediated signaling pathway (GO:0090520)
Namespace: biological_process
Definition: The series of molecular signals mediated by a sphingolipid.
Synonyms: ceramide 1-phosphate signaling pathway; ceramide signaling pathway; sphingolipid mediated signal transduction; sphingolipid signaling pathway; sphingolipid-mediated signaling pathway; sphingosine signaling pathway
podocyte cell migration (GO:0090521)
Namespace: biological_process
Definition: The orderly movement of a podocyte from one site to another, often during the development of a multicellular organism or multicellular structure. A podocyte is a specialized kidney epithelial cell.
Synonyms: glomerular visceral epithelial cell migration
vesicle tethering involved in exocytosis (GO:0090522)
Namespace: biological_process
Definition: The initial, indirect interaction between a secretory vesicle membrane and a site of exocytosis in the plasma membrane. This interaction is mediated by tethering factors (or complexes), which interact with both membranes. Interaction can occur via direct binding to membrane phospholipids or membrane proteins, or via binding to vesicle coat proteins. This process is distinct from and prior to docking and fusion.
Synonyms: vesicle tethering to plasma membrane
cytochrome-b5 reductase activity, acting on NADPH (GO:0090523)
Namespace: molecular_function
Definition: Catalysis of the reaction: 2 Fe(III)-[cytochrome b5] + NADPH = 2 Fe(II)-[cytochrome b5] + NADP+ + H+.
Synonyms: cytochrome-b5 reductase activity
cytochrome-b5 reductase activity, acting on NADH (GO:0090524)
Namespace: molecular_function
Definition: Catalysis of the reaction: 2 Fe(III)-[cytochrome b5] + NADH = 2 Fe(II)-[cytochrome b5] + NAD+ + H+.
Synonyms: cytochrome b5 reductase activity; dihydronicotinamide adenine dinucleotide-cytochrome b5 reductase activity; NADH 5alpha-reductase activity; NADH-cytochrome b5 reductase activity; NADH-cytochrome-b5 reductase activity; NADH-ferricytochrome b5 oxidoreductase activity; NADH:ferricytochrome-b5 oxidoreductase activity; reduced nicotinamide adeninedinucleotide-cytochrome b5 reductase activity
obsolete actin filament reorganization (GO:0090527)
Namespace: biological_process
Definition: OBSOLETE. A process that is carried out at the cellular level which results in dynamic structural changes to the arrangement of actin filaments.
Comment: This term was obsoleted because it represents the same process as actin filament organization ; GO:0007015.
smooth septate junction assembly (GO:0090528)
Namespace: biological_process
Definition: The assembly of a smooth septate junction, a septate junction that lacks the regular arrays of electron-dense septae found in pleated septate junctions.
cell septum assembly (GO:0090529)
Namespace: biological_process
Definition: The assembly and arrangement of a cellular component that is composed of peptidoglycan and often chitin in addition to other materials and usually forms perpendicular to the long axis of a cell or hypha. It grows centripetally from the cell wall to the center of the cell and often functions in the compartmentalization of a cell into two daughter cells.
Synonyms: cell septum assembly involved in cell cycle cytokinesis
L-ascorbic acid biosynthetic process via GDP-alpha-D-mannose (GO:0090531)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of L-ascorbic acid via the intermediate GDP-alpha-D-mannose.
Synonyms: L-ascorbic acid biosynthesis via GDP-alpha-D-mannose; Smirnoff-Wheeler's pathway
L-ascorbic acid biosynthetic process via UDP-alpha-D-glucuronate (GO:0090532)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of L-ascorbic acid via the intermediate UDP-alpha-D-glucuronate.
Synonyms: L-ascorbic acid biosynthesis via UDP-alpha-D-glucuronate
Comment: This pathway occurs in most vertebrates, although not in guinea pigs and primates, including humans.
cation-transporting ATPase complex (GO:0090533)
Namespace: cellular_component
Definition: Protein complex that carries out the reaction: ATP + H2O + cation(out) = ADP + phosphate + cation(in).
calcium ion-transporting ATPase complex (GO:0090534)
Namespace: cellular_component
Definition: Protein complex that carries out the reaction: ATP + H2O + Ca2+(out) = ADP + phosphate + Ca2+(in).
WICH complex (GO:0090535)
Namespace: cellular_component
Definition: An ISWI complex that contains an ATPase subunit of the ISWI family (specifically SNF2H in mammals, which contain two ISWI homologs) and WSTF (Williams Syndrome Transcription Factor). WICH plays roles in regulation of RNAP I and III transcription and in DNA replication and repair.
NoRC complex (GO:0090536)
Namespace: cellular_component
Definition: An ISWI complex that contains an ATPase subunit of the ISWI family (specifically SNF2H in mammals, which contain two ISWI homologs) and a Tip5 homolog. In mammals, NoRC is involved in regulation of transcription from RNAP I and RNA polymerase III promoters.
CERF complex (GO:0090537)
Namespace: cellular_component
Definition: An ISWI complex that contains an ATPase subunit of the ISWI family (specifically SNF2L in mammals, which contain two ISWI homologs) and a CECR2 homolog. In mammals, CERF is involved in regulation of transcription from RNA polymerase II promoters.
peptide pheromone export by transmembrane transport (GO:0090539)
Namespace: biological_process
Definition: The directed movement of a peptide pheromone across a membrane and out of a cell.
Synonyms: peptide pheromone export by membrane transport
bacterial cellulose biosynthetic process (GO:0090540)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation, as it occurs in certain types of bacteria, mainly Acetobacter, Sarcina ventriculi and Agrobacteria.
Synonyms: bacterial cellulose biosynthesis
MIT domain binding (GO:0090541)
Namespace: molecular_function
Definition: Binding to a MIT protein domain. The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.
ELYC domain binding (GO:0090542)
Namespace: molecular_function
Definition: Binding to a ELYC protein domain. The ELYC domain is an approximately 150 amino acid sequence which contains a highly conserved tetrapeptide sequence, ELYC.
Flemming body (GO:0090543)
Namespace: cellular_component
Definition: A cell part that is the central region of the midbody characterized by a gap in alpha-tubulin staining. It is a dense structure of antiparallel microtubules from the central spindle in the middle of the intercellular bridge.
Synonyms: Midbody ring
CHD-type complex (GO:0090545)
Namespace: cellular_component
Definition: A SWI/SNF-type complex that contains a subunit from the CHD(Chromodomain helicase DNA-binding) family. The CHD family is characterized by two signature sequence motifs: tandem chromodomains located in the N-terminal region, and the SNF2-like ATPase domain located in the central region of the protein structure.
chlorophyll fluorescence (GO:0090546)
Namespace: biological_process
Definition: The process by which excess light energy absorbed by chlorophyll and not used to drive photosynthesis is re-emitted as light.
response to low humidity (GO:0090547)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of low humidity stimulus, reduced moisture in the atmosphere.
response to nitrate starvation (GO:0090548)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a starvation stimulus, deprivation of nitrate.
response to carbon starvation (GO:0090549)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a starvation stimulus, deprivation of a carbon source.
response to molybdenum starvation (GO:0090550)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a starvation stimulus, deprivation of molybdenum.
response to manganese ion starvation (GO:0090551)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a starvation stimulus, deprivation of manganese.
unicellular trichome apex (GO:0090552)
Namespace: cellular_component
Definition: A cell projection part that is the apical most portion of a unicellular trichome.
unicellular trichome tip (GO:0090553)
Namespace: cellular_component
Definition: A cell projection part that is the apical most portion of a unicellular trichome apex.
phosphatidylcholine floppase activity (GO:0090554)
Namespace: molecular_function
Definition: Catalysis of the movement of phosphatidylcholine from the cytosolic to the exoplasmic leaflet of a membrane, using energy from the hydrolysis of ATP.
Synonyms: ATP-dependent phosphatidylcholine transporter activity; ATPase-coupled phosphatidylcholine transporter activity; phosphatidylcholine floppase activity (cytosolic to exoplasmic leaflet); phosphatidylcholine-translocating ATPase activity
phosphatidylserine floppase activity (GO:0090556)
Namespace: molecular_function
Definition: Catalysis of the movement of phosphatidylserine from the cytosolic to the exoplasmic leaflet of a membrane, using energy from the hydrolysis of ATP.
Synonyms: ATPase-coupled phosphatidylserine transporter activity; ATPase-dependent phosphatidylserine transporter activity; phosphatidylserine floppase activity (cytosolic to exoplasmic leaflet); phosphatidylserine-translocating ATPase activity
establishment of endothelial intestinal barrier (GO:0090557)
Namespace: biological_process
Definition: The establishment of a barrier between endothelial cell layers of the intestine to exert specific and selective control over the passage of water and solutes, thus allowing formation and maintenance of compartments that differ in fluid and solute composition.
plant epidermis development (GO:0090558)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the plant epidermis over time, from its formation to the mature structure.
regulation of membrane permeability (GO:0090559)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the passage or uptake of molecules by a membrane.