LiteFold/GO huggingface dataset:
positive regulation of RNA export from nucleus (GO:0046833)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of directed movement of RNA from the nucleus into the cytoplasm.
Synonyms: activation of RNA export from nucleus; positive regulation of RNA export from cell nucleus; positive regulation of RNA export out of nucleus; positive regulation of RNA transport from nucleus to cytoplasm; positive regulation of RNA-nucleus export; stimulation of RNA export from nucleus; up regulation of RNA export from nucleus; up-regulation of RNA export from nucleus; upregulation of RNA export from nucleus
lipid phosphorylation (GO:0046834)
Namespace: biological_process
Definition: The process of introducing one or more phosphate groups into a lipid, any member of a group of substances soluble in lipid solvents but only sparingly soluble in aqueous solvents.
carbohydrate phosphorylation (GO:0046835)
Namespace: biological_process
Definition: The process of introducing a phosphate group into a carbohydrate, any organic compound based on the general formula Cx(H2O)y.
glycolipid transport (GO:0046836)
Namespace: biological_process
Definition: The directed movement of glycolipids, compounds containing (usually) 1-4 linked monosaccharide residues joined by a glycosyl linkage to a lipid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
obsolete phosphorylated carbohydrate dephosphorylation (GO:0046838)
Namespace: biological_process
Definition: OBSOLETE. The process of removing a phosphate group from a phosphorylated carbohydrate, any organic compound based on the general formula Cx(H2O)y with a phosphate group attached to it.
Comment: This term was obsoleted because it represents a molecular function.
phospholipid dephosphorylation (GO:0046839)
Namespace: biological_process
Definition: The process of removing one or more phosphate groups from a phosphorylated lipid, any member of a group of substances soluble in lipid solvents but only sparingly soluble in aqueous solvents.
obsolete trisporic acid metabolic process (GO:0046841)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving trisporic acid, a carotenoic acid derivative used as a pheromone in some species of Zygomycota.
Synonyms: trisporic acid metabolism
Comment: This term was obsoleted because it is an unnecessary grouping term.
trisporic acid biosynthetic process (GO:0046842)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of trisporic acid.
Synonyms: trisporic acid anabolism; trisporic acid biosynthesis; trisporic acid formation; trisporic acid synthesis
dorsal appendage formation (GO:0046843)
Namespace: biological_process
Definition: Establishment of the dorsal filaments, elaborate specializations of the chorion that protrude from the anterior end of the egg and facilitate embryonic respiration.
chorion micropyle formation (GO:0046844)
Namespace: biological_process
Definition: Establishment of the micropyle, a single cone-shaped specialization of the chorion that allows sperm entry into the egg prior to fertilization.
branched duct epithelial cell fate determination, open tracheal system (GO:0046845)
Namespace: biological_process
Definition: Allocation of a set number of cells to each primary branch in an open tracheal system, prior to the onset of cell migration. This establishes different domains of cells within the tracheal placode.
Synonyms: branch cell fate determination
filopodium assembly (GO:0046847)
Namespace: biological_process
Definition: The assembly of a filopodium, a thin, stiff protrusion extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or an axonal growth cone.
Synonyms: filopodia biosynthesis; filopodia formation; filopodium formation
hydroxyapatite binding (GO:0046848)
Namespace: molecular_function
Definition: Binding to hydroxyapatite, the calcium phosphate mineral of formula Ca10(PO4)6(OH)2 found both in rocks of nonorganic origin and as a component of bone and dentin.
Synonyms: hydroxylapatite binding
bone remodeling (GO:0046849)
Namespace: biological_process
Definition: The continuous turnover of bone matrix and mineral that involves first, an increase in resorption (osteoclastic activity) and later, reactive bone formation (osteoblastic activity). The process of bone remodeling takes place in the adult skeleton at discrete foci. The process ensures the mechanical integrity of the skeleton throughout life and plays an important role in calcium homeostasis. An imbalance in the regulation of bone resorption and bone formation results in many of the metabolic bone diseases, such as osteoporosis.
Synonyms: bone remodelling
regulation of bone remodeling (GO:0046850)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of bone remodeling, the processes of bone formation and resorption that combine to maintain skeletal integrity.
Synonyms: regulation of bone remodelling
negative regulation of bone remodeling (GO:0046851)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of bone remodeling.
Synonyms: down regulation of bone remodeling; down-regulation of bone remodeling; downregulation of bone remodeling; inhibition of bone remodeling; negative regulation of bone remodelling
positive regulation of bone remodeling (GO:0046852)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of bone remodeling.
Synonyms: activation of bone remodeling; positive regulation of bone remodelling; stimulation of bone remodeling; up regulation of bone remodeling; up-regulation of bone remodeling; upregulation of bone remodeling
phosphatidylinositol phosphate biosynthetic process (GO:0046854)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of phosphatidylinositol phosphate.
Synonyms: phosphatidylinositol phosphate biosynthesis; phosphatidylinositol phosphate phosphorylation; phosphatidylinositol phosphorylation; phosphoinositide phosphorylation; PIP biosynthesis; PtdInsP biosynthesis
obsolete inositol phosphate dephosphorylation (GO:0046855)
Namespace: biological_process
Definition: OBSOLETE. The process of removing a phosphate group from any mono- or polyphosphorylated inositol.
Synonyms: myo-inositol phosphate dephosphorylation
Comment: This term was obsoleted because it represents a molecular function.
phosphatidylinositol dephosphorylation (GO:0046856)
Namespace: biological_process
Definition: The process of removing one or more phosphate groups from a phosphatidylinositol.
Synonyms: phosphatidylinositol phosphate catabolic process; phosphatidylinositol phosphate dephosphorylation; phosphoinositide dephosphorylation; PIP catabolism; PtdInsP catabolism; PtdInsP dephosphorylation
oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor (GO:0046857)
Namespace: molecular_function
Definition: Catalysis of an oxidation-reduction (redox) reaction in which a nitrogenous group, excluding NH and NH2 groups, acts as a hydrogen or electron donor and reduces NAD or NADP.
chlorosome (GO:0046858)
Namespace: cellular_component
Definition: A large enclosure of aggregated pigment, typically bacteriochlorophyll c (BChl c), that acts as a light-harvesting antenna structure and is characteristic of green photosynthetic bacteria (e.g. Chlorobiaceae). The BChl aggregates are organized into lamellar elements by pigment-pigment rather than pigment-protein interactions. Chlorosomes also contain BChl a, carotenoids, quinones, lipids, and proteins, and are attached to the cytoplasmic membrane via a BChl a-containing protein baseplate.
hydrogenosomal membrane (GO:0046859)
Namespace: cellular_component
Definition: The lipid bilayer surrounding a hydrogenosome.
Synonyms: hydrogenosome membrane
glycosome membrane (GO:0046860)
Namespace: cellular_component
Definition: The lipid bilayer surrounding a glycosome.
glyoxysomal membrane (GO:0046861)
Namespace: cellular_component
Definition: The lipid bilayer surrounding a glyoxysome.
Synonyms: glyoxysome membrane
chromoplast membrane (GO:0046862)
Namespace: cellular_component
Definition: Either of the lipid bilayers that surround a chromoplast and form the chromoplast envelope.
ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity (GO:0046863)
Namespace: molecular_function
Definition: Binds to and iincreases the activity of rubisco by the removal of otherwise inhibitory sugar phosphates: RuBP, and in some plants, 2-carboxyarabinitol 1-phosphate.
Synonyms: ribulose-1,5-bisphosphate carboxylase/oxygenase activase activity; ribulose-bisphosphate carboxylase activase activity; rubisco activase activity; rubisco activator
Comment: See also the molecular function term 'ribulose-bisphosphate carboxylase activity ; GO:0016984'.
isoprenoid transport (GO:0046864)
Namespace: biological_process
Definition: The directed movement of isoprenoids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Isoprenoids comprise a group of compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
terpenoid transport (GO:0046865)
Namespace: biological_process
Definition: The directed movement of terpenoids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Terpenoids are a class of compounds characterized by an isoprenoid chemical structure and include derivatives with various functional groups.
tetraterpenoid transport (GO:0046866)
Namespace: biological_process
Definition: The directed movement of tetraterpenoids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Tetraterpenoids are terpenoids with eight isoprene units.
carotenoid transport (GO:0046867)
Namespace: biological_process
Definition: The directed movement of carotenoids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carotenoids are tetraterpenoid compounds in which two units of 4 isoprenoid residues joined head-to-tail are themselves joined tail-to-tail.
mesosome (GO:0046868)
Namespace: cellular_component
Definition: An intracellular, often complex, membranous structure, sometimes with additional membranous lamellae inside, found in bacteria. They are associated with synthesis of DNA and secretion of proteins.
obsolete iron incorporation into iron-sulfur cluster via tris-L-cysteinyl-L-aspartato diiron disulfide (GO:0046869)
Namespace: biological_process
Definition: OBSOLETE. The incorporation of iron into a 2Fe-2S iron-sulfur cluster via tris-L-cysteinyl-L-aspartato diiron disulfide.
Synonyms: iron incorporation into iron-sulphur cluster via tris-L-cysteinyl-L-aspartato diiron disulphide
Comment: This term was obsoleted because it represents a molecular function.
cadmium ion binding (GO:0046870)
Namespace: molecular_function
Definition: Binding to a cadmium ion (Cd).
Synonyms: cadmium binding; Cd ion binding; copper/cadmium binding
N-acetylgalactosamine binding (GO:0046871)
Namespace: molecular_function
Definition: Binding to N-acetylgalactosamine, 2-acetamido-2-deoxygalactopyranose, the n-acetyl derivative of galactosamine.
Synonyms: N-acetylgalactosamine lectin
metal ion transmembrane transporter activity (GO:0046873)
Namespace: molecular_function
Definition: Enables the transfer of metal ions from one side of a membrane to the other.
Synonyms: heavy metal ion porter activity; heavy metal ion transporter activity; heavy metal ion:hydrogen symporter activity; heavy metal-exporting ATPase activity; high affinity metal ion uptake transporter activity; low affinity metal ion uptake transporter activity
quinolinate metabolic process (GO:0046874)
Namespace: biological_process
Definition: The chemical reactions and pathways involving quinolinate, the anion of quinolinic acid, also known as 2,3-pyridinedicarboxylic acid.
Synonyms: quinolinate metabolism
ephrin receptor binding (GO:0046875)
Namespace: molecular_function
Definition: Binding to an ephrin receptor.
Synonyms: Eph receptor binding; ephrin; GPI-linked ephrin; transmembrane ephrin
3,4-didehydroretinal binding (GO:0046876)
Namespace: molecular_function
Definition: Binding to 3,4-didehydroretinal, a form of retinal that plays a role in the visual process in freshwater fish and some amphibians analogous to that of all-trans retinal in other vertebrates. 3,4-didehydro-11-cis-retinal combines with an opsin to form cyanopsin (cone) or porphyropsin (rod).
Synonyms: blue-sensitive opsin; green-sensitive opsin; long-wave-sensitive opsin; opsin; red-sensitive opsin; short-wave-sensitive opsin; UV-sensitive opsin; violet-sensitive opsin
regulation of saliva secretion (GO:0046877)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the regulated release of saliva from a cell or a tissue.
positive regulation of saliva secretion (GO:0046878)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of the regulated release of saliva.
Synonyms: activation of saliva secretion; stimulation of saliva secretion; up regulation of saliva secretion; up-regulation of saliva secretion; upregulation of saliva secretion
hormone secretion (GO:0046879)
Namespace: biological_process
Definition: The regulated release of hormones, substances with a specific regulatory effect on a particular organ or group of cells.
positive regulation of follicle-stimulating hormone secretion (GO:0046881)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of the regulated release of follicle-stimulating hormone.
Synonyms: activation of follicle-stimulating hormone secretion; positive regulation of follicle stimulating hormone secretion; stimulation of follicle-stimulating hormone secretion; up regulation of follicle-stimulating hormone secretion; up-regulation of follicle-stimulating hormone secretion; upregulation of follicle-stimulating hormone secretion
negative regulation of follicle-stimulating hormone secretion (GO:0046882)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of the regulated release of follicle-stimulating hormone.
Synonyms: down regulation of follicle-stimulating hormone secretion; down-regulation of follicle-stimulating hormone secretion; downregulation of follicle-stimulating hormone secretion; inhibition of follicle-stimulating hormone secretion; negative regulation of follicle stimulating hormone secretion
positive regulation of hormone biosynthetic process (GO:0046886)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of hormones.
Synonyms: activation of hormone biosynthetic process; positive regulation of hormone anabolism; positive regulation of hormone biosynthesis; positive regulation of hormone formation; positive regulation of hormone synthesis; stimulation of hormone biosynthetic process; up regulation of hormone biosynthetic process; up-regulation of hormone biosynthetic process; upregulation of hormone biosynthetic process
positive regulation of hormone secretion (GO:0046887)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of the regulated release of a hormone from a cell.
Synonyms: activation of hormone secretion; stimulation of hormone secretion; up regulation of hormone secretion; up-regulation of hormone secretion; upregulation of hormone secretion
negative regulation of hormone secretion (GO:0046888)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of the regulated release of a hormone from a cell.
Synonyms: down regulation of hormone secretion; down-regulation of hormone secretion; downregulation of hormone secretion; inhibition of hormone secretion
positive regulation of lipid biosynthetic process (GO:0046889)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of lipids.
Synonyms: activation of lipid biosynthetic process; positive regulation of lipid anabolism; positive regulation of lipid biosynthesis; positive regulation of lipid formation; positive regulation of lipid synthesis; positive regulation of lipogenesis; stimulation of lipid biosynthetic process; up regulation of lipid biosynthetic process; up-regulation of lipid biosynthetic process; upregulation of lipid biosynthetic process
regulation of lipid biosynthetic process (GO:0046890)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of lipids.
Synonyms: regulation of lipid anabolism; regulation of lipid biosynthesis; regulation of lipid formation; regulation of lipid synthesis; regulation of lipogenesis
obsolete peptidyl-cysteine S-carbamoylation (GO:0046891)
Namespace: biological_process
Definition: OBSOLETE. The carbamoylation of peptidyl-cysteine to form peptidyl-S-carbamoyl-L-cysteine.
Comment: This term was obsoleted because it represents a molecular function.
obsolete peptidyl-S-carbamoyl-L-cysteine dehydration (GO:0046892)
Namespace: biological_process
Definition: OBSOLETE. The dehydration of peptidyl-S-carbamoyl-L-cysteine to form peptidyl-S-cyano-L-cysteine.
Synonyms: formation of peptidyl-S-cyanocysteine; formation of peptidyl-serine thiocyanate ester
Comment: This term was obsoleted because it represents a molecular function.
obsolete iron incorporation into hydrogenase diiron subcluster via L-cysteine ligation (GO:0046893)
Namespace: biological_process
Definition: OBSOLETE. The incorporation of iron into an L-cysteinyl diiron subcluster, found in Fe-hydrogenase.
Comment: This term was obsoleted because it represents a molecular function.
obsolete enzyme active site formation via S-amidino-L-cysteine (GO:0046894)
Namespace: biological_process
Definition: OBSOLETE. Active site formation via the transient amidinylation of peptidyl-cysteine to form peptidyl-S-amidino-L-cysteine.
Comment: This term was obsoleted because it represents a reaction intermediate, not a biological process, see PMID:9148748.
obsolete N-terminal peptidyl-isoleucine methylation (GO:0046895)
Namespace: biological_process
Definition: OBSOLETE. The methylation of the N-terminal isoleucine of proteins to form the derivative N-methyl-L-isoleucine.
Comment: This term was obsoleted because it represents a molecular function.
obsolete N-terminal peptidyl-leucine methylation (GO:0046896)
Namespace: biological_process
Definition: OBSOLETE. The methylation of the N-terminal leucine of proteins to form the derivative N-methyl-L-leucine.
Comment: This term was obsoleted because it represents a molecular function.
obsolete N-terminal peptidyl-tyrosine methylation (GO:0046897)
Namespace: biological_process
Definition: OBSOLETE. The methylation of the N-terminal tyrosine of proteins to form the derivative N-methyl-L-tyrosine.
Comment: This term was obsoleted because it represents a molecular function.
response to cycloheximide (GO:0046898)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cycloheximide stimulus. Cycloheximide (actidione) is an antibiotic produced by some Streptomyces species which interferes with protein synthesis in eukaryotes.
Synonyms: response to actidione
nucleoside triphosphate adenylate kinase activity (GO:0046899)
Namespace: molecular_function
Definition: Catalysis of the reaction: nucleoside triphosphate + AMP = nucleoside diphosphate + ADP.
Synonyms: GTP:AMP phosphotransferase; guanosine triphosphate-adenylate kinase; isozyme 3 of adenylate kinase activity; nucleoside triphosphate-adenosine monophosphate transphosphorylase activity; nucleoside-triphosphate-adenylate kinase activity; nucleoside-triphosphate:AMP phosphotransferase activity
tetrahydrofolylpolyglutamate metabolic process (GO:0046900)
Namespace: biological_process
Definition: The chemical reactions and pathways involving tetrahydrofolylpolyglutamate, a folate derivative comprising tetrahydrofolate attached to a chain of glutamate residues.
Synonyms: tetrahydrofolyl-[Glu](n) metabolic process; tetrahydrofolyl-[Glu](n) metabolism; tetrahydrofolylpolyglutamate metabolism
tetrahydrofolylpolyglutamate biosynthetic process (GO:0046901)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of tetrahydrofolylpolyglutamate, a folate derivative comprising tetrahydrofolate attached to a chain of glutamate residues.
Synonyms: folic acid-containing compound polyglutamylation; tetrahydrofolate polyglutamylation; tetrahydrofolyl-[Glu](n) biosynthesis; tetrahydrofolyl-[Glu](n) biosynthetic process; tetrahydrofolylpolyglutamate anabolism; tetrahydrofolylpolyglutamate biosynthesis; tetrahydrofolylpolyglutamate formation; tetrahydrofolylpolyglutamate synthesis; THF polyglutamylation
regulation of mitochondrial membrane permeability (GO:0046902)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the passage or uptake of molecules by the mitochondrial membrane.
Synonyms: regulation of mitochondrial envelope permeability; regulation of transport across mitochondrial membrane
secretion (GO:0046903)
Namespace: biological_process
Definition: The controlled release of a substance by a cell or a tissue.
calcium oxalate binding (GO:0046904)
Namespace: molecular_function
Definition: Binding to calcium oxalate, CaC2O4, a salt of oxalic acid. In animals, it may be excreted in urine or retained in the form of urinary calculi.
15-cis-phytoene synthase activity (GO:0046905)
Namespace: molecular_function
Definition: Catalysis of the reaction: 2 geranylgeranyl diphosphate = 15-cis-phytoene + 2 diphosphate.
Synonyms: geranylgeranyl-diphosphate geranylgeranyltransferase activity; geranylgeranyl-diphosphate:geranylgeranyl-diphosphate geranylgeranyltransferase (15-cis-phytoene-forming) activity; phytoene synthase activity; prephytoene-diphosphate synthase activity; PSase activity
tetrapyrrole binding (GO:0046906)
Namespace: molecular_function
Definition: Binding to a tetrapyrrole, a compound containing four pyrrole nuclei variously substituted and linked to each other through carbons at the alpha position.
Synonyms: porphyrin binding
intracellular transport (GO:0046907)
Namespace: biological_process
Definition: The directed movement of substances within a cell.
Synonyms: single organism intracellular transport; single-organism intracellular transport
obsolete negative regulation of crystal formation (GO:0046908)
Namespace: biological_process
Definition: OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the spontaneous (nonenzymatic) formation of crystals in a solution, for example, calcium oxalate crystals in urine.
Synonyms: negative regulation of crystal formation; negative regulation of mineralization
Comment: This term was made obsolete because a more appropriate term was created.
obsolete intermembrane transport (GO:0046909)
Namespace: biological_process
Definition: OBSOLETE. The directed movement of substances between any membrane of a cell, including the plasma membrane and its regions.
Comment: The reason for obsoletion is that this term was incorrectly named, defined, and placed in the ontology, and thus had been used to annotate two unrelated processes of [intermembrane lipid transfer] and processes related to [vesicular transport]. It was also inappropriately used as the parent term for [protein transport from ciliary membrane to plasma membrane], which has already been moved to an appropriate location as a child of [protein transport within lipid bilayer].