LiteFold/GO huggingface dataset:
CTP metabolic process (GO:0046036)
Namespace: biological_process
Definition: The chemical reactions and pathways involving CTP, cytidine triphosphate.
Synonyms: CTP deamination; CTP metabolism
GMP metabolic process (GO:0046037)
Namespace: biological_process
Definition: The chemical reactions and pathways involving GMP, guanosine monophosphate.
Synonyms: GMP metabolism
GMP catabolic process (GO:0046038)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of GMP, guanosine monophosphate.
Synonyms: GMP breakdown; GMP catabolism; GMP degradation
GTP metabolic process (GO:0046039)
Namespace: biological_process
Definition: The chemical reactions and pathways involving GTP, guanosine triphosphate.
Synonyms: GTP metabolism
ITP metabolic process (GO:0046041)
Namespace: biological_process
Definition: The chemical reactions and pathways involving ITP, inosine triphosphate.
Synonyms: ITP metabolism
ITP biosynthetic process (GO:0046042)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of ITP, inosine triphosphate.
Synonyms: ITP anabolism; ITP biosynthesis; ITP formation; ITP synthesis
TDP metabolic process (GO:0046043)
Namespace: biological_process
Definition: The chemical reactions and pathways involving TDP, ribosylthymine diphosphate.
Synonyms: TDP metabolism
TMP catabolic process (GO:0046045)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of TMP, ribosylthymine monophosphate.
Synonyms: TMP breakdown; TMP catabolism; TMP degradation
TTP metabolic process (GO:0046046)
Namespace: biological_process
Definition: The chemical reactions and pathways involving TTP, ribosylthymine triphosphate.
Synonyms: TTP metabolism
TTP catabolic process (GO:0046047)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of TTP, ribosylthymine triphosphate.
Synonyms: TTP breakdown; TTP catabolism; TTP degradation; TTP hydrolysis
UDP metabolic process (GO:0046048)
Namespace: biological_process
Definition: The chemical reactions and pathways involving UDP, uridine (5'-)diphosphate.
Synonyms: UDP metabolism
UMP metabolic process (GO:0046049)
Namespace: biological_process
Definition: The chemical reactions and pathways involving UMP, uridine monophosphate.
Synonyms: UMP metabolism
UMP catabolic process (GO:0046050)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of UMP, uridine monophosphate.
Synonyms: UMP breakdown; UMP catabolism; UMP degradation
UTP metabolic process (GO:0046051)
Namespace: biological_process
Definition: The chemical reactions and pathways involving UTP, uridine (5'-)triphosphate.
Synonyms: UTP metabolism
UTP catabolic process (GO:0046052)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of UTP, uridine (5'-)triphosphate.
Synonyms: UTP breakdown; UTP catabolism; UTP degradation; UTP hydrolysis
dAMP metabolic process (GO:0046053)
Namespace: biological_process
Definition: The chemical reactions and pathways involving dAMP, deoxyadenosine monophosphate (2'-deoxyadenosine 5'-phosphate).
Synonyms: dAMP metabolism
dGMP catabolic process (GO:0046055)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of dGMP, deoxyguanosine monophosphate (2'-deoxyguanosine 5'-phosphate).
Synonyms: dGMP breakdown; dGMP catabolism; dGMP degradation
dADP metabolic process (GO:0046056)
Namespace: biological_process
Definition: The chemical reactions and pathways involving dADP, deoxyadenosine diphosphate (2'-deoxyadenosine 5'-diphosphate).
Synonyms: dADP metabolism
dADP catabolic process (GO:0046057)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of dADP, deoxyadenosine diphosphate (2'-deoxyadenosine 5'-diphosphate).
Synonyms: dADP breakdown; dADP catabolism; dADP degradation
cAMP metabolic process (GO:0046058)
Namespace: biological_process
Definition: The chemical reactions and pathways involving the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate).
Synonyms: 3',5' cAMP metabolic process; 3',5' cAMP metabolism; 3',5'-cAMP metabolic process; 3',5'-cAMP metabolism; adenosine 3',5'-cyclophosphate metabolic process; adenosine 3',5'-cyclophosphate metabolism; cAMP generating peptide activity; cAMP metabolism; cyclic AMP metabolic process; cyclic AMP metabolism
dAMP catabolic process (GO:0046059)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of dAMP, deoxyadenosine monophosphate (2'-deoxyadenosine 5'-phosphate).
Synonyms: dAMP breakdown; dAMP catabolism; dAMP degradation
dATP metabolic process (GO:0046060)
Namespace: biological_process
Definition: The chemical reactions and pathways involving dATP, deoxyadenosine triphosphate (2'-deoxyadenosine 5'-triphosphate).
Synonyms: dATP metabolism
dATP catabolic process (GO:0046061)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of dATP, deoxyadenosine triphosphate (2'-deoxyadenosine 5'-triphosphate).
Synonyms: dATP breakdown; dATP catabolism; dATP degradation
dCDP metabolic process (GO:0046062)
Namespace: biological_process
Definition: The chemical reactions and pathways involving dCDP, deoxycytidine 5'-diphosphate.
Synonyms: dCDP metabolism
dCMP metabolic process (GO:0046063)
Namespace: biological_process
Definition: The chemical reactions and pathways involving dCMP, deoxycytidine monophosphate.
Synonyms: dCMP metabolism
dCMP biosynthetic process (GO:0046064)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of dCMP, deoxycytidine monophosphate.
Synonyms: dCMP anabolism; dCMP biosynthesis; dCMP formation; dCMP synthesis
dCTP metabolic process (GO:0046065)
Namespace: biological_process
Definition: The chemical reactions and pathways involving dCTP, deoxycytidine triphosphate.
Synonyms: dCTP metabolism
dGDP metabolic process (GO:0046066)
Namespace: biological_process
Definition: The chemical reactions and pathways involving dGDP, deoxyguanosine diphosphate, (2'-deoxyguanosine 5'-diphosphate).
Synonyms: dGDP metabolism
dGDP catabolic process (GO:0046067)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of dGDP, deoxyguanosine diphosphate, (2'-deoxyguanosine 5'-diphosphate).
Synonyms: dGDP breakdown; dGDP catabolism; dGDP degradation
cGMP metabolic process (GO:0046068)
Namespace: biological_process
Definition: The chemical reactions and pathways involving cyclic GMP, guanosine 3',5'-phosphate.
Synonyms: cGMP metabolism
cGMP catabolic process (GO:0046069)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of cyclic GMP, guanosine 3',5'-phosphate.
Synonyms: cGMP breakdown; cGMP catabolism; cGMP degradation
dGTP metabolic process (GO:0046070)
Namespace: biological_process
Definition: The chemical reactions and pathways involving dGTP, guanosine triphosphate.
Synonyms: dGTP metabolism
dGTP biosynthetic process (GO:0046071)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of dGTP, guanosine triphosphate.
Synonyms: dGTP anabolism; dGTP biosynthesis; dGTP formation; dGTP synthesis
dTDP metabolic process (GO:0046072)
Namespace: biological_process
Definition: The chemical reactions and pathways involving dTDP, deoxyribosylthymine diphosphate.
Synonyms: dTDP metabolism
dTTP metabolic process (GO:0046075)
Namespace: biological_process
Definition: The chemical reactions and pathways involving dTTP, deoxyribosylthymine triphosphate.
Synonyms: dTTP metabolism
dTTP catabolic process (GO:0046076)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of dTTP, deoxyribosylthymine triphosphate.
Synonyms: dTTP breakdown; dTTP catabolism; dTTP degradation
dUDP metabolic process (GO:0046077)
Namespace: biological_process
Definition: The chemical reactions and pathways involving dUDP, deoxyuridine (5'-)diphosphate.
Synonyms: dUDP metabolism
dUMP metabolic process (GO:0046078)
Namespace: biological_process
Definition: The chemical reactions and pathways involving dUMP, deoxyuridine (5'-)monophosphate (2'-deoxyuridine 5'-phosphate).
Synonyms: dUMP metabolism
dUMP catabolic process (GO:0046079)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of dUMP, deoxyuridine (5'-)monophosphate.
Synonyms: dUMP breakdown; dUMP catabolism; dUMP degradation
dUTP metabolic process (GO:0046080)
Namespace: biological_process
Definition: The chemical reactions and pathways involving dUTP, deoxyuridine (5'-)triphosphate.
Synonyms: dUTP metabolism
dUTP catabolic process (GO:0046081)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of dUTP, deoxyuridine (5'-)triphosphate.
Synonyms: dUTP breakdown; dUTP catabolism; dUTP degradation
obsolete 5-methylcytosine biosynthetic process (GO:0046082)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of 5-methylcytosine, a methylated base of DNA.
Synonyms: 5-methylcytosine anabolism; 5-methylcytosine biosynthesis; 5-methylcytosine formation; 5-methylcytosine synthesis
Comment: This term was obsoleted because itis redundant with DNA methylation-dependent heterochromatin formation ; GO:0006346 or its children.
adenosine metabolic process (GO:0046085)
Namespace: biological_process
Definition: The chemical reactions and pathways involving adenosine, adenine riboside, a ribonucleoside found widely distributed in cells of every type as the free nucleoside and in combination in nucleic acids and various nucleoside coenzymes.
Synonyms: adenosine metabolism
adenosine biosynthetic process (GO:0046086)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of adenosine, adenine riboside, a ribonucleoside found widely distributed in cells of every type as the free nucleoside and in combination in nucleic acids and various nucleoside coenzymes.
Synonyms: adenosine anabolism; adenosine biosynthesis; adenosine formation; adenosine synthesis
cytidine metabolic process (GO:0046087)
Namespace: biological_process
Definition: The chemical reactions and pathways involving cytidine, cytosine riboside, a widely distributed nucleoside.
Synonyms: cytidine metabolism
obsolete cytidine biosynthetic process (GO:0046088)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of cytidine, cytosine riboside, a widely distributed nucleoside.
Synonyms: cytidine anabolism; cytidine biosynthesis; cytidine formation; cytidine synthesis
Comment: The reason for obsoletion is that there is no evidence that this process exists.
obsolete cytosine biosynthetic process (GO:0046089)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of cytosine, 4-amino-2-hydroxypyrimidine, a pyrimidine derivative that is one of the five main bases found in nucleic acids; it occurs widely in cytidine derivatives.
Synonyms: cytosine anabolism; cytosine biosynthesis; cytosine formation; cytosine synthesis
Comment: The reason for obsoletion is that there is no evidence that this process exists.
deoxyadenosine metabolic process (GO:0046090)
Namespace: biological_process
Definition: The chemical reactions and pathways involving deoxyadenosine, 2-deoxyribosyladenine, one of the four major nucleosides of DNA.
Synonyms: deoxyadenosine metabolism
deoxyadenosine biosynthetic process (GO:0046091)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of deoxyadenosine, 2-deoxyribosyladenine, one of the four major nucleosides of DNA.
Synonyms: deoxyadenosine anabolism; deoxyadenosine biosynthesis; deoxyadenosine formation; deoxyadenosine synthesis
deoxycytidine metabolic process (GO:0046092)
Namespace: biological_process
Definition: The chemical reactions and pathways involving deoxycytidine, 2-deoxyribosylcytosine, one of the four major nucleosides of DNA.
Synonyms: deoxycytidine metabolism
deoxycytidine biosynthetic process (GO:0046093)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of deoxycytidine, 2-deoxyribosylcytosine, one of the four major nucleosides of DNA.
Synonyms: deoxycytidine anabolism; deoxycytidine biosynthesis; deoxycytidine formation; deoxycytidine synthesis
deoxyinosine metabolic process (GO:0046094)
Namespace: biological_process
Definition: The chemical reactions and pathways involving deoxyinosine, hypoxanthine deoxyriboside.
Synonyms: deoxyinosine metabolism
deoxyinosine biosynthetic process (GO:0046095)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of deoxyinosine, hypoxanthine deoxyriboside.
Synonyms: deoxyinosine anabolism; deoxyinosine biosynthesis; deoxyinosine formation; deoxyinosine synthesis
deoxyuridine biosynthetic process (GO:0046097)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of deoxyuridine, 2-deoxyribosyluracil, one of the four major nucleosides of DNA.
Synonyms: deoxyuridine anabolism; deoxyuridine biosynthesis; deoxyuridine formation; deoxyuridine synthesis
guanine metabolic process (GO:0046098)
Namespace: biological_process
Definition: The chemical reactions and pathways involving guanine, 2-amino-6-hydroxypurine, a purine that is one of the five main bases found in nucleic acids and a component of a number of phosphorylated guanosine derivatives whose metabolic or regulatory functions are important.
Synonyms: guanine metabolism
guanine biosynthetic process (GO:0046099)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of guanine, 2-amino-6-hydroxypurine, a purine that is one of the five main bases found in nucleic acids and a component of a number of phosphorylated guanosine derivatives whose metabolic or regulatory functions are important.
Synonyms: guanine anabolism; guanine biosynthesis; guanine formation; guanine synthesis
hypoxanthine metabolic process (GO:0046100)
Namespace: biological_process
Definition: The chemical reactions and pathways involving hypoxanthine, 6-hydroxy purine, an intermediate in the degradation of adenylate. Its ribonucleoside is known as inosine and its ribonucleotide as inosinate.
Synonyms: hypoxanthine metabolism
inosine metabolic process (GO:0046102)
Namespace: biological_process
Definition: The chemical reactions and pathways involving inosine, hypoxanthine riboside, a nucleoside found free but not in combination in nucleic acids except in the anticodons of some tRNAs.
Synonyms: inosine metabolism
inosine biosynthetic process (GO:0046103)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of inosine, hypoxanthine riboside, a nucleoside found free but not in combination in nucleic acids except in the anticodons of some tRNAs.
Synonyms: inosine anabolism; inosine biosynthesis; inosine formation; inosine synthesis
thymidine metabolic process (GO:0046104)
Namespace: biological_process
Definition: The chemical reactions and pathways involving thymidine, deoxyribosylthymine thymine 2-deoxyriboside, a deoxynucleoside very widely distributed but occurring almost entirely as phosphoric esters in deoxynucleotides and deoxyribonucleic acid, DNA.
Synonyms: deoxyribosylthymine metabolic process; deoxyribosylthymine metabolism; thymidine metabolism
thymidine biosynthetic process (GO:0046105)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of thymidine, deoxyribosylthymine thymine 2-deoxyriboside, a deoxynucleoside very widely distributed but occurring almost entirely as phosphoric esters in deoxynucleotides and deoxyribonucleic acid, DNA.
Synonyms: deoxyribosylthymine biosynthesis; deoxyribosylthymine biosynthetic process; thymidine anabolism; thymidine biosynthesis; thymidine formation; thymidine synthesis
thymine biosynthetic process (GO:0046106)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of thymine, 5-methyluracil, one of the two major pyrimidine bases present (as thymidine) in DNA but not found in RNA other than (as ribothymidine) in transfer RNA, where it is a minor base.
Synonyms: thymine anabolism; thymine biosynthesis; thymine formation; thymine synthesis
uracil biosynthetic process (GO:0046107)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of uracil, 2,4-dioxopyrimidine, one of the pyrimidine bases occurring in RNA, but not in DNA.
Synonyms: uracil anabolism; uracil biosynthesis; uracil formation; uracil synthesis
uridine metabolic process (GO:0046108)
Namespace: biological_process
Definition: The chemical reactions and pathways involving uridine, uracil riboside, a ribonucleoside very widely distributed but occurring almost entirely as phosphoric esters in ribonucleotides and ribonucleic acids.
Synonyms: uridine metabolism
uridine biosynthetic process (GO:0046109)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of uridine, uracil riboside, a ribonucleoside very widely distributed but occurring almost entirely as phosphoric esters in ribonucleotides and ribonucleic acids.
Synonyms: uridine anabolism; uridine biosynthesis; uridine formation; uridine synthesis
xanthine metabolic process (GO:0046110)
Namespace: biological_process
Definition: The chemical reactions and pathways involving xanthine, 2,6-dihydroxypurine, a purine formed in the metabolic breakdown of guanine but not present in nucleic acids.
Synonyms: xanthine metabolism
xanthine biosynthetic process (GO:0046111)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of xanthine, 2,6-dihydroxypurine, a purine formed in the metabolic breakdown of guanine but not present in nucleic acids.
Synonyms: xanthine anabolism; xanthine biosynthesis; xanthine formation; xanthine synthesis
nucleobase biosynthetic process (GO:0046112)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of a nucleobase, a nitrogenous base that is a constituent of a nucleic acid.
Synonyms: nucleobase anabolism; nucleobase biosynthesis; nucleobase formation; nucleobase synthesis
nucleobase catabolic process (GO:0046113)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of a nucleobase, a nitrogenous base that is a constituent of a nucleic acid.
Synonyms: nucleobase breakdown; nucleobase catabolism; nucleobase degradation
guanosine biosynthetic process (GO:0046114)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of guanine, guanine riboside, a nucleoside with a wide species distribution.
Synonyms: guanosine anabolism; guanosine biosynthesis; guanosine formation; guanosine synthesis
guanosine catabolic process (GO:0046115)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of guanine, guanine riboside, a nucleoside with a wide species distribution.
Synonyms: guanosine breakdown; guanosine catabolism; guanosine degradation; guanosine phosphorolysis
obsolete queuosine metabolic process (GO:0046116)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving queuosines, any of a series of nucleosides found in tRNA and having an additional pentenyl ring added via an NH group to the methyl group of 7-methylguanosine. The pentenyl ring may carry other substituents.
Synonyms: queuosine metabolism
Comment: The reason for obsoletion is that this term was an unnecessary grouping term.
obsolete queuosine catabolic process (GO:0046117)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the breakdown of queuosines, any of a series of nucleosides found in tRNA and having an additional pentenyl ring added via an NH group to the methyl group of 7-methylguanosine. The pentenyl ring may carry other substituents.
Synonyms: queuosine breakdown; queuosine catabolism; queuosine degradation
Comment: The reason for obsoletion is that this term was an unnecessary grouping term.
7-methylguanosine biosynthetic process (GO:0046118)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of 7-methylguanosine, a modified nucleoside that forms a cap at the 5'-terminus of eukaryotic mRNA.
Synonyms: 7-methylguanosine anabolism; 7-methylguanosine biosynthesis; 7-methylguanosine formation; 7-methylguanosine synthesis
7-methylguanosine catabolic process (GO:0046119)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of 7-methylguanosine, a modified nucleoside that forms a cap at the 5'-terminus of eukaryotic mRNA.
Synonyms: 7-methylguanosine breakdown; 7-methylguanosine catabolism; 7-methylguanosine degradation
2'-deoxyribonucleoside biosynthetic process (GO:0046120)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of any one of a family of organic molecules consisting of a purine or pyrimidine base covalently bonded to a sugar deoxyribose (a deoxyribonucleoside).
Synonyms: deoxyribonucleoside anabolism; deoxyribonucleoside biosynthesis; deoxyribonucleoside biosynthetic process; deoxyribonucleoside formation; deoxyribonucleoside synthesis
2'-deoxyribonucleoside catabolic process (GO:0046121)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of any one of a family of organic molecules consisting of a purine or pyrimidine base covalently bonded to a sugar deoxyribose (a deoxyribonucleoside).
Synonyms: deoxyribonucleoside breakdown; deoxyribonucleoside catabolic process; deoxyribonucleoside catabolism; deoxyribonucleoside degradation
purine deoxyribonucleoside metabolic process (GO:0046122)
Namespace: biological_process
Definition: The chemical reactions and pathways involving any one of a family of organic molecules consisting of a purine base covalently bonded to a sugar deoxyribose (a deoxyribonucleoside).
Synonyms: purine deoxyribonucleoside metabolism
purine deoxyribonucleoside biosynthetic process (GO:0046123)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of any purine deoxyribonucleoside, one of a family of organic molecules consisting of a purine base covalently bonded to a sugar deoxyribose (a deoxyribonucleoside).
Synonyms: purine deoxyribonucleoside anabolism; purine deoxyribonucleoside biosynthesis; purine deoxyribonucleoside formation; purine deoxyribonucleoside synthesis
purine deoxyribonucleoside catabolic process (GO:0046124)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of any one of a family of organic molecules consisting of a purine base covalently bonded to a sugar deoxyribose (a deoxyribonucleoside).
Synonyms: purine deoxyribonucleoside breakdown; purine deoxyribonucleoside catabolism; purine deoxyribonucleoside degradation
pyrimidine deoxyribonucleoside metabolic process (GO:0046125)
Namespace: biological_process
Definition: The chemical reactions and pathways involving any one of a family of organic molecules consisting of a pyrimidine base covalently bonded to a sugar deoxyribose (a deoxyribonucleoside).
Synonyms: pyrimidine deoxyribonucleoside metabolism