LiteFold/GO huggingface dataset:
L-histidine transmembrane transport (GO:0089709)
Namespace: biological_process
Definition: The directed movement of L-histidine across a membrane.
endocytic targeting sequence binding (GO:0089710)
Namespace: molecular_function
Definition: Binding to a endocytic signal sequence, a specific peptide sequence, of 4-6 amino acids with an essential tyrosine (Y), found on cytoplasmic tails of some cell surface membrane proteins, which directs internalization by clathrin-coated pits.
Cbf1-Met4-Met28 complex (GO:0089713)
Namespace: cellular_component
Definition: A heteromeric complex consisting of Cbf1 and basic leucine zipper (bZIP) containing transcriptional activators, Met4 and Met28, that forms over the sequence TCACGTG in the upstream activating sequence (UAS) of genes involved in sulfur amino acid metabolism, resulting in their transcriptional activation.
UDP-N-acetyl-D-mannosamine dehydrogenase activity (GO:0089714)
Namespace: molecular_function
Definition: Catalysis of the reaction: UDP-N-acetyl-alpha-D-mannosamine + 2 NAD+ + H2O = UDP-N-acetyl-alpha-D-mannosaminuronate + 2 NADH + 2 H+.
tRNA (L-threonylcarbamoyladenosine(37)-C2) methyltransferase activity (GO:0089715)
Namespace: molecular_function
Definition: Catalysis of the reaction: S-adenosyl-L-methionine + tRNA containing N6-threonylcarbamoyladenosine at position 37 = S-adenosyl-L-homocysteine + tRNA containing N6-methylthreonylcarbamoyladenosine at position 37.
Synonyms: tRNA (L-threonylcarbamoyladenosine(37)-C(2)) methyltransferase activity; tRNA (L-threonylcarbamoyladenosine37-C2-) methyltransferase activity; tRNA m6t6A37 methyltransferase activity
Comment: This activity is distinct from tRNA (adenine(37)-C2-)-methyltransferase activity (GO:0002935) in that it requires the presence of a threonylcarbamoyl modification.
Pip2-Oaf1 complex (GO:0089716)
Namespace: cellular_component
Definition: A heterodimeric complex consisting of Zn(2)Cys(6) containing transcription factors Pip2 and Oaf1. It binds to the oleate response element (ORE), found in the promoters of fatty acid-inducible genes in Saccharomyces where, in the presence of oleate this bound complex activates the transcription of genes encoding peroxisomal proteins.
amino acid import across plasma membrane (GO:0089718)
Namespace: biological_process
Definition: The directed movement of an amino acid from outside of a cell, across the plasma membrane and into the cytosol.
Synonyms: amino acid import into cell; amino acid transmembrane import; L-amino acid import; L-amino acid uptake
RHG protein domain binding (GO:0089719)
Namespace: molecular_function
Definition: Binding to an RHG (reaper/hid/grimm) domain/motif (AKA iap binding motif).
Synonyms: iap binding domain binding; inhibitor of apoptosis binding domain binding; reaper hid grim domain binding; RHG domain binding
caspase binding (GO:0089720)
Namespace: molecular_function
Definition: Binding to a caspase family protein.
phosphoenolpyruvate transmembrane transport (GO:0089722)
Namespace: biological_process
Definition: The directed movement of phosphoenolpytuvate across a membrane.
replication fork arrest at tRNA locus (GO:0090001)
Namespace: biological_process
Definition: A process that impedes the progress of the DNA replication fork at natural replication fork pausing sites within the eukaryotic tRNA transcription unit.
regulation of linear element assembly (GO:0090006)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency or extent of linear element assembly. Linear element assembly is the cell cycle process in which a proteinaceous scaffold, related to the synaptonemal complex, is assembled in association with S. pombe chromosomes during meiotic prophase.
obsolete regulation of mitotic anaphase (GO:0090007)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of mitotic anaphase, a cell cycle process comprising the steps by which a cell progresses through anaphase, the stage of mitosis during which the two sets of chromosomes separate and move away from each other.
Synonyms: regulation of mitotic anaphase
Comment: This term was made obsolete as part of the cell cycle overhaul. This is because it was decided that cell cycle phases are intervals and so cannot be regulated, rather it is the transitions between the phases that are regulated.
hypoblast development (GO:0090008)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the hypoblast over time, from its formation to the mature structure. The hypoblast is a tissue formed from the inner cell mass that lies beneath the epiblast.
primitive streak formation (GO:0090009)
Namespace: biological_process
Definition: The developmental process pertaining to the initial formation of the primitive streak from unspecified parts. The primitive streak is a ridge of cells running along the midline of the embryo where the mesoderm ingresses. It defines the anterior-posterior axis.
obsolete transforming growth factor beta receptor signaling pathway involved in primitive streak formation (GO:0090010)
Namespace: biological_process
Definition: OBSOLETE. The series of molecular signals initiated by an extracellular ligand binding to a transforming growth factor beta receptor on the surface of a target cell, which contributes to the formation of the primitive streak.
Synonyms: TGFbeta signaling pathway involved in primitive streak formation; transforming growth factor beta receptor signalling pathway involved in primitive streak formation
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete Wnt signaling pathway involved in primitive streak formation (GO:0090011)
Namespace: biological_process
Definition: OBSOLETE. The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in transcription of target genes that contribute to the formation of the primitive streak.
Synonyms: Wnt receptor signaling pathway involved in primitive streak formation; Wnt receptor signalling pathway involved in primitive streak formation; Wnt-activated signaling pathway involved in primitive streak formation
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete negative regulation of transforming growth factor beta receptor signaling pathway involved in primitive streak formation (GO:0090012)
Namespace: biological_process
Definition: OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of any TGF-beta receptor signaling pathway that contributes to the formation of the primitive streak.
Synonyms: negative regulation of transforming growth factor beta receptor signalling pathway involved in primitive streak formation
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete regulation of transforming growth factor beta receptor signaling pathway involved in primitive streak formation (GO:0090013)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of any TGF-beta receptor signaling pathway that contributes to the formation of the primitive streak.
Synonyms: regulation of transforming growth factor beta receptor signalling pathway involved in primitive streak formation
Comment: This term was obsoleted because it represents a GO-CAM model.
leaflet formation (GO:0090014)
Namespace: biological_process
Definition: The developmental process pertaining to the initial formation of a leaflet from unspecified parts. A leaflet is one of the ultimate segments of a compound leaf.
posterior neural plate formation (GO:0090018)
Namespace: biological_process
Definition: The formation of posterior end of the flat, thickened layer of ectodermal cells known as the neural plate.
obsolete regulation of transcription involved in anterior neural plate formation (GO:0090019)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter contributing to the formation of the anterior neural plate.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete regulation of transcription involved in posterior neural plate formation (GO:0090020)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter contributing to the formation of the posterior neural plate.
Comment: This term was obsoleted because it represents a GO-CAM model.
obsolete positive regulation of posterior neural plate formation by Wnt signaling pathway (GO:0090021)
Namespace: biological_process
Definition: OBSOLETE. The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and increasing the rate or extent of posterior neural plate formation.
Synonyms: positive regulation of posterior neural plate formation by Wnt receptor signaling pathway; positive regulation of posterior neural plate formation by Wnt receptor signalling pathway; positive regulation of posterior neural plate formation by Wnt-activated signaling pathway
Comment: This term was obsoleted because it represents a GO-CAM model.
regulation of neutrophil chemotaxis (GO:0090022)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate, or extent of neutrophil chemotaxis. Neutrophil chemotaxis is the directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding.
positive regulation of neutrophil chemotaxis (GO:0090023)
Namespace: biological_process
Definition: Any process that increases the frequency, rate, or extent of neutrophil chemotaxis. Neutrophil chemotaxis is the directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding.
negative regulation of neutrophil chemotaxis (GO:0090024)
Namespace: biological_process
Definition: Any process that decreases the frequency, rate, or extent of neutrophil chemotaxis. Neutrophil chemotaxis is the directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding.
regulation of monocyte chemotaxis (GO:0090025)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate, or extent of monocyte chemotaxis.
positive regulation of monocyte chemotaxis (GO:0090026)
Namespace: biological_process
Definition: Any process that increases the frequency, rate, or extent of monocyte chemotaxis.
negative regulation of monocyte chemotaxis (GO:0090027)
Namespace: biological_process
Definition: Any process that decreases the frequency, rate, or extent of monocyte chemotaxis.
obsolete positive regulation of pheromone-dependent signal transduction involved in conjugation with cellular fusion (GO:0090028)
Namespace: biological_process
Definition: OBSOLETE. Any process that increases the frequency, rate or extent of pheromone-dependent signal transduction during conjugation with cellular fusion, a signal transduction process resulting in the relay, amplification or dampening of a signal generated in response to pheromone exposure in organisms that undergo conjugation with cellular fusion.
Comment: This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.
negative regulation of pheromone-dependent signal transduction involved in conjugation with cellular fusion (GO:0090029)
Namespace: biological_process
Definition: Any process that decreases the frequency, rate or extent of pheromone-dependent signal transduction during conjugation with cellular fusion, a signal transduction process resulting in the relay, amplification or dampening of a signal generated in response to pheromone exposure in organisms that undergo conjugation with cellular fusion.
regulation of steroid hormone biosynthetic process (GO:0090030)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of steroid hormones,compounds with a 1, 2, cyclopentanoperhydrophenanthrene nucleus that act as hormones.
positive regulation of steroid hormone biosynthetic process (GO:0090031)
Namespace: biological_process
Definition: Any process that increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of steroid hormones,compounds with a 1, 2, cyclopentanoperhydrophenanthrene nucleus that act as hormones.
negative regulation of steroid hormone biosynthetic process (GO:0090032)
Namespace: biological_process
Definition: Any process that decreases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of steroid hormones,compounds with a 1, 2, cyclopentanoperhydrophenanthrene nucleus that act as hormones.
positive regulation of filamentous growth (GO:0090033)
Namespace: biological_process
Definition: Any process that increases the frequency, rate or extent of the process in which a multicellular organism or a group of unicellular organisms grow in a threadlike, filamentous shape.
regulation of chaperone-mediated protein complex assembly (GO:0090034)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate, or extent of chaperone-mediated protein complex assembly. Chaperone-mediated protein complex assembly is the aggregation, arrangement and bonding together of a set of components to form a protein complex, mediated by chaperone molecules that do not form part of the finished complex.
positive regulation of chaperone-mediated protein complex assembly (GO:0090035)
Namespace: biological_process
Definition: Any process that increases the frequency, rate, or extent of chaperone-mediated protein complex assembly. Chaperone-mediated protein complex assembly is the aggregation, arrangement and bonding together of a set of components to form a protein complex, mediated by chaperone molecules that do not form part of the finished complex.
regulation of protein kinase C signaling (GO:0090036)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate, or extent of a series of reactions, mediated by the intracellular serine/threonine kinase protein kinase C, which occurs as a result of a single trigger reaction or compound.
Synonyms: regulation of protein kinase C signaling cascade; regulation of protein kinase C signalling cascade
positive regulation of protein kinase C signaling (GO:0090037)
Namespace: biological_process
Definition: Any process that increases the frequency, rate, or extent of a series of reactions, mediated by the intracellular serine/threonine kinase protein kinase C, which occurs as a result of a single trigger reaction or compound.
Synonyms: positive regulation of protein kinase C signaling cascade; positive regulation of protein kinase C signalling cascade
negative regulation of protein kinase C signaling (GO:0090038)
Namespace: biological_process
Definition: Any process that decreases the frequency, rate, or extent of a series of reactions, mediated by the intracellular serine/threonine kinase protein kinase C, which occurs as a result of a single trigger reaction or compound.
Synonyms: negative regulation of protein kinase C signaling cascade; negative regulation of protein kinase C signalling cascade
tubulin deacetylation (GO:0090042)
Namespace: biological_process
Definition: The removal of an acetyl group from tubulin. An acetyl group is CH3CO-, derived from acetic [ethanoic] acid.
regulation of tubulin deacetylation (GO:0090043)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of tubulin deacetylation. Tubulin deacetylation is the removal of an acetyl group from a protein amino acid.
positive regulation of tubulin deacetylation (GO:0090044)
Namespace: biological_process
Definition: Any process that increases the frequency, rate or extent of tubulin deacetylation. Tubulin deacetylation is the removal of an acetyl group from a protein amino acid.
positive regulation of deacetylase activity (GO:0090045)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of deacetylase activity, the catalysis of the hydrolysis of an acetyl group or groups from a substrate molecule.
obsolete regulation of transcription regulator activity (GO:0090046)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of transcription regulator activity, any molecular function that plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor.
Synonyms: regulation of transcription regulator activity
Comment: At the time of obsoletion, under "regulation of molecular function", a term exists for "regulation of sequence-specific DNA-binding transcription factor activity" and the positive and negative child terms, but no more detailed terms exist. In reannotating, please consider if the paper would support annotation to a regulation term for a specific RNA polymerase. Also consider if what you need would be regulation of protein binding transcription factor activity or any of its child terms instead. If so, please consider making a SF item regarding creation of such a term.
obsolete positive regulation of transcription regulator activity (GO:0090047)
Namespace: biological_process
Definition: OBSOLETE. Any process that increases the frequency, rate or extent of transcription regulator activity, any molecular function that plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor.
Synonyms: positive regulation of transcription regulator activity
Comment: At the time of obsoletion, under "regulation of molecular function", a term exists for "regulation of sequence-specific DNA-binding transcription factor activity" and the positive and negative child terms, but no more detailed terms exist. In reannotating, please consider if the paper would support annotation to a regulation term for a specific RNA polymerase. Also consider if what you need would be regulation of protein binding transcription factor activity or any of its child terms instead. If so, please consider making a SF item regarding creation of such a term.
obsolete negative regulation of transcription regulator activity (GO:0090048)
Namespace: biological_process
Definition: OBSOLETE. Any process that decreases the frequency, rate or extent of transcription regulator activity, any molecular function that plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor.
Synonyms: negative regulation of transcription regulator activity
Comment: At the time of obsoletion, under "regulation of molecular function", a term exists for "regulation of sequence-specific DNA-binding transcription factor activity" and the positive and negative child terms, but no more detailed terms exist. In reannotating, please consider if the paper would support annotation to a regulation term for a specific RNA polymerase. Also consider if what you need would be regulation of protein binding transcription factor activity or any of its child terms instead. If so, please consider making a SF item regarding creation of such a term.
regulation of cell migration involved in sprouting angiogenesis (GO:0090049)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of cell migration involved in sprouting angiogenesis. Cell migration involved in sprouting angiogenesis is the orderly movement of endothelial cells into the extracellular matrix in order to form new blood vessels contributing to the process of sprouting angiogenesis.
positive regulation of cell migration involved in sprouting angiogenesis (GO:0090050)
Namespace: biological_process
Definition: Any process that increases the frequency, rate or extent of cell migration involved in sprouting angiogenesis. Cell migration involved in sprouting angiogenesis is the orderly movement of endothelial cells into the extracellular matrix in order to form new blood vessels contributing to the process of sprouting angiogenesis.
negative regulation of cell migration involved in sprouting angiogenesis (GO:0090051)
Namespace: biological_process
Definition: Any process that decreases the frequency, rate or extent of cell migration involved in sprouting angiogenesis. Cell migration involved in sprouting angiogenesis is the orderly movement of endothelial cells into the extracellular matrix in order to form new blood vessels contributing to the process of sprouting angiogenesis.
regulation of pericentric heterochromatin formation (GO:0090052)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of heterochromatin formation at the centromere. Chromatin silencing at the centromere is the repression of transcription of centromeric DNA by altering the structure of chromatin.
Synonyms: regulation of chromatin silencing at centromere; regulation of pericentric heterochromatin assembly
positive regulation of pericentric heterochromatin formation (GO:0090053)
Namespace: biological_process
Definition: Any process that increases the frequency, rate or extent of pericentric heterochromatin formation.
Synonyms: positive regulation of chromatin silencing at centromere; positive regulation of pericentric heterochromatin assembly
regulation of silent mating-type cassette heterochromatin formation (GO:0090054)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate, or extent of heterochromatin formation at silent mating-type cassette.
Synonyms: regulation of chromatin silencing at silent mating-type cassette; regulation of silent mating-type cassette heterochromatin assembly
positive regulation of silent mating-type cassette heterochromatin formation (GO:0090055)
Namespace: biological_process
Definition: Any process that increases the frequency, rate, or extent of heterochromatin formation at silent mating-type cassette.
Synonyms: positive regulation of chromatin silencing at silent mating-type cassette; positive regulation of silent mating-type cassette heterochromatin assembly
regulation of chlorophyll metabolic process (GO:0090056)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving chlorophyll.
root radial pattern formation (GO:0090057)
Namespace: biological_process
Definition: The radial pattern formation process that results in the formation of the different tissues of the root around its radial axis.
metaxylem development (GO:0090058)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the metaxylem over time, from its formation to the mature structure. The metaxylem is the part of the primary xylem that differentiates after the protoxylem and before the secondary xylem, if any of the latter is formed.
protoxylem development (GO:0090059)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the protoxylem over time, from its formation to the mature structure. The protoxylem comprises the first formed elements of the primary xylem.
regulation of metaxylem development (GO:0090060)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate, or extent of metaxylem development. Metaxylem development is the process whose specific outcome is the progression of the metaxylem over time, from its formation to the mature structure. The metaxylem is the part of the primary xylem that differentiates after the protoxylem and before the secondary xylem, if any of the latter is formed.