LiteFold/GO huggingface dataset:
dorsal/ventral pattern formation (GO:0009953)
Namespace: biological_process
Definition: The regionalization process in which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation. The dorsal/ventral axis is defined by a line that runs orthogonal to both the anterior/posterior and left/right axes. The dorsal end is defined by the upper or back side of an organism. The ventral end is defined by the lower or front side of an organism.
Synonyms: dorsal-ventral pattern formation; dorsal/ventral pattern specification; dorsoventral pattern formation
proximal/distal pattern formation (GO:0009954)
Namespace: biological_process
Definition: The regionalization process in which specific areas of cell differentiation are determined along a proximal/distal axis. The proximal/distal axis is defined by a line that runs from main body (proximal end) of an organism outward (distal end).
Synonyms: proximal/distal pattern specification
adaxial/abaxial pattern specification (GO:0009955)
Namespace: biological_process
Definition: The regionalization process in which differences in cell differentiation along the adaxial/abaxial are generated. Adaxial refers to being situated toward an axis of an anatomical structure. Abaxial refers to being situated away from an axis of an anatomical structure.
Synonyms: adaxial/abaxial pattern formation
radial pattern formation (GO:0009956)
Namespace: biological_process
Definition: The regionalization process that results in defined areas around a point in which specific types of cell differentiation will occur.
Synonyms: radial pattern specification
epidermal cell fate specification (GO:0009957)
Namespace: biological_process
Definition: The process in which a cell becomes capable of differentiating autonomously into an epidermal cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed.
Synonyms: hypodermal cell fate specification
positive gravitropism (GO:0009958)
Namespace: biological_process
Definition: The orientation of plant parts towards gravity.
Synonyms: root gravitropism
endosperm development (GO:0009960)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the endosperm over time, from its formation to the mature structure. The endosperm is formed during fertilization and provides nutrients to the developing embryo.
response to 1-aminocyclopropane-1-carboxylic acid (GO:0009961)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a 1-aminocyclopropane-1-carboxylic acid stimulus.
regulation of flavonoid biosynthetic process (GO:0009962)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of flavonoids.
Synonyms: regulation of flavonoid anabolism; regulation of flavonoid biosynthesis; regulation of flavonoid formation; regulation of flavonoid synthesis
positive regulation of flavonoid biosynthetic process (GO:0009963)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of flavonoids.
Synonyms: activation of flavonoid biosynthetic process; positive regulation of flavonoid anabolism; positive regulation of flavonoid biosynthesis; positive regulation of flavonoid formation; positive regulation of flavonoid synthesis; stimulation of flavonoid biosynthetic process; up regulation of flavonoid biosynthetic process; up-regulation of flavonoid biosynthetic process; upregulation of flavonoid biosynthetic process
negative regulation of flavonoid biosynthetic process (GO:0009964)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of flavonoids.
Synonyms: down regulation of flavonoid biosynthetic process; down-regulation of flavonoid biosynthetic process; downregulation of flavonoid biosynthetic process; inhibition of flavonoid biosynthetic process; negative regulation of flavonoid anabolism; negative regulation of flavonoid biosynthesis; negative regulation of flavonoid formation; negative regulation of flavonoid synthesis
leaf morphogenesis (GO:0009965)
Namespace: biological_process
Definition: The process in which the anatomical structures of the leaf are generated and organized.
regulation of signal transduction (GO:0009966)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of signal transduction.
Synonyms: regulation of signaling pathway; regulation of signalling pathway
positive regulation of signal transduction (GO:0009967)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of signal transduction.
Synonyms: activation of signal transduction; positive regulation of signaling pathway; positive regulation of signalling pathway; stimulation of signal transduction; up regulation of signal transduction; up-regulation of signal transduction; upregulation of signal transduction
negative regulation of signal transduction (GO:0009968)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction.
Synonyms: down regulation of signal transduction; down-regulation of signal transduction; downregulation of signal transduction; inhibition of signal transduction; negative regulation of signaling pathway; negative regulation of signalling pathway
xyloglucan biosynthetic process (GO:0009969)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of xyloglucan, the cross-linking glycan composed of (1->4)-beta-D glucan backbone substituted at regular intervals with beta-D-xylosyl-(1->6) residues, which is present in the primary cell wall of most higher plants.
Synonyms: xyloglucan anabolism; xyloglucan biosynthesis; xyloglucan formation; xyloglucan synthesis
cellular response to sulfate starvation (GO:0009970)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of sulfate.
Synonyms: cellular response to sulphate starvation
anastral spindle assembly involved in male meiosis (GO:0009971)
Namespace: biological_process
Definition: The aggregation, arrangement and bonding together of a set of components to form the anastral spindle in male meiotic cells.
obsolete cytidine deamination (GO:0009972)
Namespace: biological_process
Definition: OBSOLETE. The removal of amino group in the presence of water.
Comment: The reason for obsoletion is that the term is represents a single-step process.
adenylyl-sulfate reductase activity (GO:0009973)
Namespace: molecular_function
Definition: Catalysis of the reaction: A + AMP + 2 H+ + sulfite = adenosine 5'-phosphosulfate + AH2.
Synonyms: adenosine phosphosulfate reductase activity; adenylyl-sulphate reductase activity; APS reductase activity
obsolete zeinoxanthin epsilon hydroxylase activity (GO:0009974)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: zeinoxanthin + NADPH + O2 + H+ = lutein + NADP+ + H2O. Adds a hydroxyl group to the epsilon ring of the alpha-carotene.
Comment: This term was obsoleted because it represents a specific substrate of carotene epsilon hydroxylase activity ; GO:0072374
cyclase activity (GO:0009975)
Namespace: molecular_function
Definition: Catalysis of a ring closure reaction.
tocopherol cyclase activity (GO:0009976)
Namespace: molecular_function
Definition: Catalysis of the reactions: delta-tocopherol = 2-methyl-6-phytyl-1,4-benzene-1,4-diol, gamma-tocopherol = 2,3-dimethyl-6-phytylbenzene-1,4-diol. delta-tocotrienol = 6-geranylgeranyl-2-methylbenzene-1,4-diol gamma-tocotrienol, and = 6-geranylgeranyl-2,3-dimethylbenzene-1,4-diol.
proton motive force dependent protein transmembrane transporter activity (GO:0009977)
Namespace: molecular_function
Definition: Catalysis of the transfer of proteins from one side of a membrane to the other. Transportation is dependent on pH gradient across the membrane.
Synonyms: arginine targeting transmembrane transporter activity; delta-pH-dependent protein transporter activity; pH-dependent protein transporter activity; twin-arginine targeting transmembrane transporter activity
allene oxide synthase activity (GO:0009978)
Namespace: molecular_function
Definition: Catalysis of the reaction: 13(S)-hydroperoxylinolenate = 12,13(S)-epoxylinolenate + H2O.
Synonyms: (9Z,11E,14Z)-(13S)-hydroperoxyoctadeca-9,11,14-trienoate 12,13-hydro-lyase [(9Z)-(13S)-12,13-epoxyoctadeca-9,11-dienoate-forming]; (9Z,11E,14Z)-(13S)-hydroperoxyoctadeca-9,11,14-trienoate 12,13-hydro-lyase activity; HPI; hydroperoxide dehydratase activity; hydroperoxide isomerase activity; linoleate hydroperoxide isomerase; linoleic acid hydroperoxide isomerase
obsolete 16:0 monogalactosyldiacylglycerol desaturase activity (GO:0009979)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the introduction of an omega-3 double bond into an unsaturated 16-carbon fatty acid in a monogalactosyldiacylglycerol molecule.
Comment: This term was obsoleted because it represents the same activity as palmitoyl-[glycerolipid] 7-desaturase activity ; GO:0102843.
obsolete glutamate carboxypeptidase activity (GO:0009980)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the release of C-terminal glutamate residues from a wide range of N-acylating groups, including peptidyl, aminoacyl, benzoyl, benzyloxycarbonyl, folyl and pteroyl groups.
Synonyms: carboxypeptidase G activity; carboxypeptidase G1 activity; carboxypeptidase G2 activity; glutamate carboxypeptidase activity; glutamyl carboxypeptidase activity; N-pteroyl-L-glutamate hydrolase activity
Comment: This term was made obsolete because it represents a gene product, and the substrate specificity it refers to is not cleanly defined.
pseudouridine synthase activity (GO:0009982)
Namespace: molecular_function
Definition: Catalysis of the reaction: a uridine in RNA = a pseudouridine in RNA. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.
Comment: Note that this term should not be confused with 'pseudouridylate synthase activity ; GO:0004730', which refers to the formation of free pseudouridine from uracil and ribose-5-phosphate.
obsolete tyrosine aminopeptidase activity (GO:0009983)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the release of N-terminal tyrosine from a peptide.
Synonyms: tyrosine aminopeptidase activity
Comment: This term was made obsolete because it represents a gene product, and the substrate specificity it refers to is not cleanly defined.
obsolete adenylate forming enzyme activity (GO:0009984)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: substrate + ATP = substrate-AMP + diphosphate.
Synonyms: adenylate forming enzyme activity
Comment: This term was made obsolete because it does not refer to a specific reaction but rather to a process which results in the formation of AMP.
cell surface (GO:0009986)
Namespace: cellular_component
Definition: The external part of the cell wall and/or plasma membrane.
Synonyms: cell associated; cell bound
Comment: Note that this term is intended to annotate gene products that are attached (integrated or loosely bound) to the plasma membrane or cell wall.
cellular process (GO:0009987)
Namespace: biological_process
Definition: Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
Synonyms: cell growth and/or maintenance; cell physiology; cellular physiological process; single-organism cellular process
Comment: This term should not be used for direct annotation. It should be possible to make a more specific annotation to one of the children of this term.
cell-cell recognition (GO:0009988)
Namespace: biological_process
Definition: Cell recognition between cells. May involve the formation of specialized cell junctions.
cell-matrix recognition (GO:0009989)
Namespace: biological_process
Definition: Cell recognition that involves the interaction of the cell with the extracellular matrix.
contact guidance (GO:0009990)
Namespace: biological_process
Definition: Cell recognition involving the deposition of specific pathways in the extracellular matrix that guide migrating cells.
obsolete response to extracellular stimulus (GO:0009991)
Namespace: biological_process
Definition: OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an extracellular stimulus.
Comment: The reason for obsoletion is that this term is too vague.
intracellular water homeostasis (GO:0009992)
Namespace: biological_process
Definition: A homeostatic process involved in the maintenance of a steady state level of water within a cell.
Synonyms: cellular osmoregulation; cellular water homeostasis
oocyte differentiation (GO:0009994)
Namespace: biological_process
Definition: The process in which a relatively unspecialized immature germ cell acquires the specialized features of a mature female gamete.
Synonyms: oocyte cell differentiation
soluble molecule recognition (GO:0009995)
Namespace: biological_process
Definition: The recognition of soluble molecules in the environment.
negative regulation of cell fate specification (GO:0009996)
Namespace: biological_process
Definition: Any process that restricts, stops or prevents a cell from adopting a specific cell fate.
Synonyms: down regulation of cell fate specification; down-regulation of cell fate specification; downregulation of cell fate specification; inhibition of cell fate specification; suppression of cell fate
negative regulation of cardioblast cell fate specification (GO:0009997)
Namespace: biological_process
Definition: Any process that restricts, stops or prevents a cell from specifying into a cardioblast. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating.
Synonyms: down regulation of cardioblast cell fate specification; down-regulation of cardioblast cell fate specification; downregulation of cardioblast cell fate specification; inhibition of cardioblast cell fate specification; suppression of cardioblast cell fate
negative regulation of retinal cone cell fate specification (GO:0009998)
Namespace: biological_process
Definition: Any process that restricts, stops or prevents a cell from specifying into a retinal cone cell.
Synonyms: down regulation of retinal cone cell fate specification; down-regulation of retinal cone cell fate specification; downregulation of retinal cone cell fate specification; inhibition of retinal cone cell fate specification; negative regulation of retina cone cell fate specification; suppression of retina cone cell fate; suppression of retinal cone cell fate
negative regulation of auditory receptor cell fate specification (GO:0009999)
Namespace: biological_process
Definition: Any process that restricts, stops or prevents a cell from specifying into an auditory hair cell.
Synonyms: down regulation of auditory receptor cell fate specification; down-regulation of auditory receptor cell fate specification; downregulation of auditory receptor cell fate specification; inhibition of auditory receptor cell fate specification; negative regulation of auditory hair cell fate specification; suppression of auditory receptor cell fate; suppression of hair cell fate
glial cell differentiation (GO:0010001)
Namespace: biological_process
Definition: The process in which a relatively unspecialized cell acquires the specialized features of a glial cell.
Synonyms: glia cell differentiation; neuroglia differentiation
cardioblast differentiation (GO:0010002)
Namespace: biological_process
Definition: The process in which a relatively unspecialized mesodermal cell acquires the specialized structural and/or functional features of a cardioblast. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating.
Synonyms: cardiac precursor cell differentiation; cardioblast cell differentiation; cardiomyocyte generation
gastrulation involving germ band extension (GO:0010004)
Namespace: biological_process
Definition: A complex and coordinated series of cellular movements, including germ band extension, that occurs at the end of cleavage during embryonic development. An example of this process is found in Drosophila melanogaster.
cortical microtubule, transverse to long axis (GO:0010005)
Namespace: cellular_component
Definition: Arrays of microtubules underlying and connected to the plasma membrane, in the cortical cytosol, oriented mainly with their axes transverse to the long axis of the cell (and root in plants). In plants it influences the direction of cellulose microfibril deposition.
Toc complex (GO:0010006)
Namespace: cellular_component
Definition: Protein translocon complex at the chloroplast outer membrane.
magnesium chelatase complex (GO:0010007)
Namespace: cellular_component
Definition: A heterotrimeric enzyme complex composed of three subunits, all of which are required for enzyme activity, which catalyzes the chelation of Mg by proto IX in an ATP-dependent manner.
endosome membrane (GO:0010008)
Namespace: cellular_component
Definition: The lipid bilayer surrounding an endosome.
Synonyms: endosomal membrane
cytoplasmic side of endosome membrane (GO:0010009)
Namespace: cellular_component
Definition: The leaflet of the endosome membrane that faces the cytoplasm, including any protein embedded in, attached to, or peripherally associated with it.
Synonyms: external leaflet of endosome membrane; external side of endosome membrane
auxin binding (GO:0010011)
Namespace: molecular_function
Definition: Binding to auxin, a plant hormone that regulates aspects of plant growth.
Synonyms: auxin receptor
obsolete steroid 22-alpha hydroxylase activity (GO:0010012)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: 5-alpha-campestanaol + O2 = 6-deoxocathasterone + H2O.
Comment: This term was obsoleted because it represents the same activity as steroid 22S-hydroxylase activity; GO:0160191.
N-1-naphthylphthalamic acid binding (GO:0010013)
Namespace: molecular_function
Definition: Binding to N-1-naphthylphthalamic acid, an auxin transport inhibitor.
meristem initiation (GO:0010014)
Namespace: biological_process
Definition: Initiation of a region of tissue in a plant that is composed of one or more undifferentiated cells capable of undergoing mitosis and differentiation, thereby effecting growth and development of a plant by giving rise to more meristem or specialized tissue.
root morphogenesis (GO:0010015)
Namespace: biological_process
Definition: The process in which the anatomical structures of roots are generated and organized. The root is the usually underground part of a seed plant body that originates from the hypocotyl, functions as an organ of absorption, aeration, and food storage or as a means of anchorage and support.
shoot system morphogenesis (GO:0010016)
Namespace: biological_process
Definition: The process in which the anatomical structures of the shoot are generated and organized. The shoot is the part of a seed plant body that is usually above ground.
Synonyms: shoot morphogenesis
red or far-red light signaling pathway (GO:0010017)
Namespace: biological_process
Definition: The series of molecular signals initiated upon sensing by photoreceptor molecules of red light or far red light. Red light is electromagnetic radiation of wavelength of 580-700nm. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs.
Synonyms: phytochrome signaling pathway; red or far red light signaling pathway; red or far-red light signal transduction; red or far-red light signalling pathway; red/far red light signaling pathway
far-red light signaling pathway (GO:0010018)
Namespace: biological_process
Definition: The series of molecular signals initiated upon sensing of far red light by a photoreceptor molecule. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs.
Synonyms: far red light signalling pathway; far red signaling pathway; far-red light signal transduction
chloroplast-nucleus signaling pathway (GO:0010019)
Namespace: biological_process
Definition: The process in which a molecular signal is transduced between the chloroplast and nucleus, such that expression of nuclear encoding photosynthetic proteins is coupled with chloroplast biogenesis.
Synonyms: chloroplast-nucleus signalling pathway
chloroplast fission (GO:0010020)
Namespace: biological_process
Definition: The division of a chloroplast within a cell to form two or more separate chloroplast compartments. This division occurs independently of mitosis.
Synonyms: chloroplast division
amylopectin biosynthetic process (GO:0010021)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of amylopectin, the (1->4) linked alpha glucose units with alpha-(1->6) linkages.
Synonyms: amylopectin anabolism; amylopectin biosynthesis; amylopectin formation; amylopectin synthesis
meristem determinacy (GO:0010022)
Namespace: biological_process
Definition: The process in which a meristem becomes determinate (i.e. ceases to produce lateral organs and may or may not terminally differentiate).
proanthocyanidin biosynthetic process (GO:0010023)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of proanthocyanidin.
Synonyms: proanthocyanidin anabolism; proanthocyanidin biosynthesis; proanthocyanidin formation; proanthocyanidin synthesis