LiteFold/GO huggingface dataset:
AMP transport (GO:0080121)
Namespace: biological_process
Definition: The directed movement of AMP, adenosine monophosphate, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
Synonyms: adenosine monophosphate transport
regulation of reductive pentose-phosphate cycle (GO:0080152)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of reductive pentose-phosphate cycle.
Synonyms: regulation of C3 photosynthesis; regulation of Calvin cycle
abscisic acid transport (GO:0080168)
Namespace: biological_process
Definition: The directed movement of abscisic acid into, out of, within or between cells by means of some external agent such as a transporter or pore.
petal epidermis patterning (GO:0080172)
Namespace: biological_process
Definition: The regionalization process that regulates the coordinated growth and establishes the non-random spatial arrangement of the cells in the petal epidermis.
2-methylguanosine metabolic process (GO:0080180)
Namespace: biological_process
Definition: The chemical reactions and pathways involving 2-methylguanosine.
floral organ senescence (GO:0080187)
Namespace: biological_process
Definition: The last stage of flower development during which programmed degradation of macromolecules and nutrient recycling take place.
Comment: Includes senescence of petals, sepals, anthers, and any other plant organ that is part of a flower. Floral organ senescence may follow pollination. In some flowers, the organs of the corolla abscise before they senesce.
lateral growth (GO:0080190)
Namespace: biological_process
Definition: Growth of a plant axis (shoot axis or root) that originates from a lateral meristem.
Comment: Includes thickening of plant axes (PO:0025004) due to the activity of a cambium (PO:0005597), known as secondary growth and found in most gymnosperms and dicotyledons, a primary thickening meristem (PO:0005039) as found in many monocotyledons, some ferns and some cycads, or secondary thickening meristem, (PO:0025414) as found in some monocotyledons.
obsolete interaction with host via secreted substance released from haustorium (GO:0085004)
Namespace: biological_process
Definition: OBSOLETE. An interaction with the host organism mediated by a substance released by the other (symbiont) organism via the haustorium, a projection from a cell or tissue that penetrates the host's cell wall. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Comment: This term was deprecated because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target.
obsolete interaction with host mediated by symbiont secreted substance released from Maurer's cleft (GO:0085009)
Namespace: biological_process
Definition: OBSOLETE. An interaction with the host organism mediated by a substance released by the other (symbiont) organism via Maurer's cleft. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Synonyms: interaction with host mediated by symbiont secreted substance released from Maurers cleft
Comment: This term was obsoleted because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target.
obsolete interaction with host via protein secreted by type VII secretion system (GO:0085013)
Namespace: biological_process
Definition: OBSOLETE. An interaction with the host organism mediated by a substance secreted by the symbiont organism by a type VII secretion system. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Comment: This term was obsoleted because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target.
obsolete modification by symbiont of host morphology or physiology via protein secreted by Tat complex (GO:0085025)
Namespace: biological_process
Definition: OBSOLETE. The process in which an organism (symbiont) effects a change in the structure or function of its host organism, mediated by a substance secreted by the Tat complex in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Synonyms: modification by symbiont of host morphology or physiology via protein secreted by the Tat secretion system
Comment: This term was obsoleted because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target.
symbiotic process benefiting host (GO:0085030)
Namespace: biological_process
Definition: A process carried out by symbiont gene products that enables a symbiotic interaction with a host organism, that is beneficial to the host organism.
Synonyms: mutualism
extrahaustorial membrane (GO:0085037)
Namespace: cellular_component
Definition: The membrane surrounding the symbiont haustorium during symbiosis, derived from the host plasma membrane.
Comment: See also: haustorium ; GO:0085035 and extrahaustorial matrix ; GO:0085036.
membrane depolarization during action potential (GO:0086010)
Namespace: biological_process
Definition: The process in which membrane potential changes in the depolarizing direction from the negative resting potential towards the positive membrane potential that will be the peak of the action potential.
adenylate cyclase-activating adrenergic receptor signaling pathway involved in heart process (GO:0086023)
Namespace: biological_process
Definition: The series of molecular signals beginning with a G protein-coupled adrenergic cell surface receptor combining with epinephrine or norepinephrine, to activate adenylate cyclase, which contributes to a circulatory system process carried out by the heart.
Synonyms: adrenergic receptor signaling pathway involved in heart process; adrenergic receptor signalling pathway involved in heart process; beta-adrenergic receptor signalling pathway involved in heart process
obsolete P-type sodium:potassium-exchanging transporter activity involved in regulation of cardiac muscle cell membrane potential (GO:0086037)
Namespace: molecular_function
Definition: OBSOLETE. Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Na+(in) + K+(out) = ADP + phosphate + Na+(out) + K+(in), that contributes to regulating the membrane potential of a cardiac muscle cell.
Comment: The reason for obsoletion is that this term is pre-composed and should be represented as a GO-CAM model.
membrane repolarization during AV node cell action potential (GO:0086049)
Namespace: biological_process
Definition: The process in which ions are transported across a membrane such that the AV node cardiac muscle cell membrane potential changes in the direction from the positive membrane potential at the peak of the action potential towards the negative resting potential.
Synonyms: membrane repolarization involved in regulation of atrioventricular node cardiac muscle cell action potential; membrane repolarization involved in regulation of AV node cardiac muscle cell action potential
bundle of His cell to Purkinje myocyte communication by electrical coupling (GO:0086054)
Namespace: biological_process
Definition: The process that mediates signaling interactions between a bundle of His cardiac muscle cell and a Purkinje myocyte by transfer of current between their adjacent cytoplasms via intercellular protein channels.
Synonyms: bundle of His cardiac muscle cell to Purkinje myocyte communication by electrical coupling
voltage-gated calcium channel activity involved in bundle of His cell action potential (GO:0086057)
Namespace: molecular_function
Definition: Enables the transmembrane transfer of a calcium ion by a voltage-gated channel across the plasma membrane of a bundle of His cardiac muscle cell that contributes to the depolarization phase of an action potential. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded.
Synonyms: voltage-gated calcium channel activity involved in bundle of His cardiac muscle cell action potential
cell communication by electrical coupling involved in cardiac conduction (GO:0086064)
Namespace: biological_process
Definition: The process that mediates signaling interactions between one cell and another cell by transfer of current between their adjacent cytoplasms via intercellular protein channels and contributes to the process of cardiac conduction.
regulation of the force of heart contraction by cardiac conduction (GO:0086092)
Namespace: biological_process
Definition: A cardiac conduction process that modulates the extent of heart contraction, changing the force with which blood is propelled.
obsolete spanning component of membrane (GO:0089717)
Namespace: cellular_component
Definition: OBSOLETE. The component of a membrane consisting of gene products and protein complexes that have some part that spans both leaflets of the membrane.
Comment: This term was obsoleted because it represents protein topology, not a cellular component.
phosphoenolpyruvate transmembrane transporter activity (GO:0089721)
Namespace: molecular_function
Definition: Enables the transfer of a phosphoenolpyruvate from one side of a membrane to the other.
positive regulation of leaflet formation by auxin mediated signaling pathway (GO:0090015)
Namespace: biological_process
Definition: Any process that increases the frequency, rate or extent of leaflet formation as a result of the series of molecular signals generated in response to detection of auxin.
Synonyms: positive regulation of leaflet formation by auxin mediated signalling pathway
regulation of leaflet formation (GO:0090016)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of leaflet formation.
anterior neural plate formation (GO:0090017)
Namespace: biological_process
Definition: The formation of anterior end of the flat, thickened layer of ectodermal cells known as the neural plate.
regulation of peptide transport (GO:0090087)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the directed movement of peptides, compounds of two or more amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
regulation of oligopeptide transport (GO:0090088)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the directed movement of oligopeptides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages.
regulation of metanephric cap mesenchymal cell proliferation (GO:0090095)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate, or extent of metanephric cap mesenchymal cell proliferation. Metanephric cap mesenchymal cell proliferation is the multiplication or reproduction of metanephric cap mesenchymal cells, resulting in the expansion of the cell population. A metanephric cap mesenchymal cell is a mesenchymal cell that has condensed with other mesenchymal cells surrounding the ureteric bud tip.
positive regulation of transmembrane receptor protein serine/threonine kinase signaling pathway (GO:0090100)
Namespace: biological_process
Definition: Any process that increases the rate, frequency, or extent of the series of molecular signals generated as a consequence of a transmembrane receptor serine/threonine kinase binding to its physiological ligand.
Synonyms: positive regulation of transmembrane receptor protein serine/threonine kinase signalling pathway
cochlea morphogenesis (GO:0090103)
Namespace: biological_process
Definition: The process in which the cochlea is generated and organized.
COPII vesicle uncoating (GO:0090112)
Namespace: biological_process
Definition: The process in which COPII vesicle coat proteins are disassembled, and released.
cell-cell adhesion involved in synapse maturation (GO:0090125)
Namespace: biological_process
Definition: The attachment of the pre-synaptic cell to the post-synaptic cell via adhesion molecules that contributes to synapse maturation.
Synonyms: trans-synaptic adhesion
regulation of actin cytoskeleton organization by cell-cell adhesion (GO:0090138)
Namespace: biological_process
Definition: Any cell-cell adhesion process that modulates the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins.
Synonyms: regulation of actin cytoskeleton organisation by cell-cell adhesion
mitochondrial membrane fission (GO:0090149)
Namespace: biological_process
Definition: A process that is carried out at the cellular level which results in the separation of a single continuous mitochondrial membrane into two membranes and contributes to mitochondrial fission.
Synonyms: membrane fission involved in mitochondrial fission; mitochondrial membrane scission
asymmetric Golgi ribbon formation (GO:0090164)
Namespace: biological_process
Definition: The asymmetric formation of a continuous ribbon of interconnected Golgi stacks of flat cisternae that contributes to the establishment of epithelial cell polarity.
regulation of secretion by asymmetric Golgi ribbon formation (GO:0090165)
Namespace: biological_process
Definition: The asymmetric formation of a continuous ribbon of interconnected Golgi stacks of flat cisternae that modulates the controlled release of a substance from a polarized epithelial cell.
regulation of Golgi inheritance (GO:0090170)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency or extent of Golgi inheritance. Golgi inheritance is the partitioning of Golgi apparatus between daughter cells at cell division.
chondrocyte morphogenesis (GO:0090171)
Namespace: biological_process
Definition: The process in which the structures of a chondrocyte are generated and organized. This process occurs while the initially relatively unspecialized cell is acquiring the specialized features of a chondrocyte.
obsolete planar cell polarity pathway involved in neural tube closure (GO:0090179)
Namespace: biological_process
Definition: OBSOLETE. The series of molecular signals initiated by binding of a Wnt protein to a receptor on the surface of the target cell where activated receptors signal via downstream effectors that modulates the establishment of planar polarity contributing to neural tube closure.
Comment: The reason for obsoletion is that this term should be captured using GO-CAM or extensions.
regulation of branching involved in ureteric bud morphogenesis (GO:0090189)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency or extent of branching involved in ureteric bud morphogenesis, the process in which the branching structure of the ureteric bud is generated and organized. The ureteric bud is an epithelial tube that grows out from the metanephric duct. The bud elongates and branches to give rise to the ureter and kidney collecting tubules.
regulation of kinetochore assembly (GO:0090234)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency, or extent of kinetochore assembly, the aggregation, arrangement and bonding together of a set of components to form the kinetochore, a multisubunit complex that is located at the centromeric region of DNA and provides an attachment point for the spindle microtubules.
Synonyms: regulation of chromosome-kinetochore attachment; regulation of NMS complex assembly
regulation of transcription-coupled nucleotide-excision repair (GO:0090262)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate, or extent of the nucleotide-excision repair process that carries out preferential repair of DNA lesions on the actively transcribed strand of the DNA duplex. In addition, the transcription-coupled nucleotide-excision repair pathway is required for the recognition and repair of a small subset of lesions that are not recognized by the global genome nucleotide excision repair pathway.
positive regulation of mitotic cell cycle spindle assembly checkpoint (GO:0090267)
Namespace: biological_process
Definition: Any process that increases the rate, frequency, or extent of the mitotic cell cycle spindle assembly checkpoint, a cell cycle checkpoint that delays the metaphase/anaphase transition of a mitotic nuclear division until the spindle is correctly assembled and chromosomes are attached to the spindle.
activation of mitotic cell cycle spindle assembly checkpoint (GO:0090268)
Namespace: biological_process
Definition: Any process that starts the inactive process of a mitotic cell cycle spindle assembly checkpoint.
negative regulation of fibroblast growth factor production (GO:0090272)
Namespace: biological_process
Definition: Any process that decreases the rate, frequency or extent of the appearance of a fibroblast growth factor due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.
obsolete positive regulation of transcription involved in G2/M transition of mitotic cell cycle (GO:0090282)
Namespace: biological_process
Definition: OBSOLETE. Any process that activates or increases the frequency, rate or extent of transcription of target genes that are transcribed as part of the G2/M transition of the mitotic cell cycle.
Synonyms: activation of G2/M-specific transcription in the mitotic cell cycle; activation of transcription from RNA polymerase II promoter during G2/M-phase of the mitotic cell cycle; activation of transcription involved in G2/M transition of mitotic cell cycle; positive regulation of G2/M-specific transcription in the mitotic cell cycle; positive regulation of transcription from RNA polymerase II promoter during G2/M-phase of the mitotic cell cycle; up-regulation of G2/M-specific transcription in the mitotic cell cycle; up-regulation of transcription from RNA polymerase II promoter during G2/M transition of the mitotic cell cycle; up-regulation of transcription involved in G2/M transition of mitotic cell cycle
Comment: This term was obsoleted because it represents a GO-CAM model.
nucleic acid metabolic process (GO:0090304)
Namespace: biological_process
Definition: Any cellular metabolic process involving nucleic acids.
Comment: This term should not be used for direct annotation. It should be possible to make a more specific annotation to one of the children of this term.
regulation of superoxide metabolic process (GO:0090322)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency, or extent of superoxide metabolism, the chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species.
Synonyms: regulation of superoxide metabolism
regulation of olfactory learning (GO:0090328)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency, or extent of olfactory learning. Olfactory learning is any process in an organism in which a relatively long-lasting adaptive behavioral change occurs in response to (repeated) exposure to an olfactory cue.
positive regulation of secretion of lysosomal enzymes (GO:0090340)
Namespace: biological_process
Definition: Any process that increases the rate, frequency or extent of secretion of lysosomal enzymes, the controlled release of lysosomal enzymes by a cell.
organohalogen metabolic process (GO:0090345)
Namespace: biological_process
Definition: The chemical reactions and pathways involving organohalogen compounds, as carried out by individual cells.
obsolete regulation of organofluorine metabolic process (GO:0090348)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the rate, frequency or extent of the chemical reactions and pathways involving organofluorine compounds, as carried out by individual cells.
Comment: This term was obsoleted because it is an unnecessary grouping class.
regulation of glycerol transport (GO:0090371)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency, or extent of the directed movement of glycerol into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
seed trichome initiation (GO:0090377)
Namespace: biological_process
Definition: The process in which the developmental fate of an epidermal cell becomes restricted such that it will develop into a seed trichome, causing a change in the orientation of cell division in the ovule epidermis at or just before anthesis.
Synonyms: seed trichome fate commitment
Comment: These processes continue up to 3 days post-anthesis (DPA) in Gossypium spp.
seed trichome maturation (GO:0090380)
Namespace: biological_process
Definition: A developmental process, independent of morphogenetic (shape) change, that is required for a seed trichome to attain its fully functional state.
Comment: These processes continue to 60 DPA in Gossypium spp.
plant cell papilla (GO:0090395)
Namespace: cellular_component
Definition: A cell projection that is a short, rounded projection from a plant epidermal cell.
Comment: Part of papilla cell (PO:0025166), which is a shoot epidermal cell (PO:0025165) in plants. Replaces the obsolete term papillae (PO:0002001).
leaf papilla (GO:0090396)
Namespace: cellular_component
Definition: A plant cell papilla that is part of a leaf papilla cell.
Comment: Part of leaf papilla cell (PO:0025167).
nicotinate transmembrane transporter activity (GO:0090416)
Namespace: molecular_function
Definition: Enables the transfer of nicotinate from one side of a membrane to the other.
lithium ion transmembrane transport (GO:0090452)
Namespace: biological_process
Definition: The directed movement of lithium ions (Li+) across a membrane.
Synonyms: lithium ion import; lithium ion uptake
purine nucleotide-sugar transmembrane transport (GO:0090480)
Namespace: biological_process
Definition: The process in which a purine nucleotide-sugar is transported across a membrane. Purine nucleotide-sugars are purine nucleotides in glycosidic linkage with a monosaccharide or monosaccharide derivative.
Synonyms: purine nucleotide-sugar membrane transport; purine nucleotide-sugar transport
Comment: Note that this term is not intended for use in annotating lateral movement within membranes.
polo box domain specific binding (GO:0090488)
Namespace: molecular_function
Definition: Binding to a polo box domain of a protein. The polo box domain is involved in binding substrates of polo kinases.
obsolete N,N-Dihydroxy-L-tryptophan decarboxylase activity (GO:0090492)
Namespace: molecular_function
Definition: OBSOLETE. Catalyzes the reaction: N,N-Dihydroxy-L-tryptophan = Indole-3-acetaldehyde oxime + CO2 + H2O.
Comment: This term was obsoleted because it represents a sub-reaction of tryptophan N-monooxygenase activity ; GO:0090489.
obsolete RNA phosphodiester bond hydrolysis, endonucleolytic (GO:0090502)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving the hydrolysis of internal 3',5'-phosphodiester bonds in one or two strands of ribonucleotides.
Comment: This term was obsoleted because it represents a molecular function.
obsolete phenylethylamine metabolic process involved in synaptic transmission (GO:0090507)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving phenylethylamine that contribute to synaptic transmission.
Comment: This term was obsoleted because it is an unnecessary grouping class.
anticlinal cell division (GO:0090510)
Namespace: biological_process
Definition: A cell division process where the division plane is perpendicular to the surface of the organ. It adds cells to the existing cell layer or cell file.
peptide pheromone secretion (GO:0090538)
Namespace: biological_process
Definition: The regulated release of a peptide pheromone from a cell.