LiteFold/GO huggingface dataset:
obsolete interaction with symbiont via protein secreted by type II secretion system (GO:0052327)
Namespace: biological_process
Definition: OBSOLETE. An interaction with the symbiont organism mediated by a substance secreted by the other organism by a type II secretion system. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.
Synonyms: interaction with symbiont via protein secreted by type II secretion system
Comment: This term was made obsolete because it does not represent a real biological process.
obsolete induction by organism of induced systemic resistance in symbiont (GO:0052350)
Namespace: biological_process
Definition: OBSOLETE. Any process in which an organism activates induced systemic resistance in the symbiont; induced systemic resistance is a response that confers broad spectrum systemic resistance to disease and that does not depend upon salicylic acid signaling. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.
Synonyms: activation by organism of induced systemic resistance in symbiont; activation by organism of ISR in symbiont; induction by organism of induced systemic resistance in symbiont; induction by organism of ISR in symbiont
Comment: This term was made obsolete because it does not represent a real biological process.
obsolete catabolism by host of symbiont cell wall chitin (GO:0052356)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways performed by an organism resulting in the breakdown of chitin in the symbiont cell wall. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.
Comment: This term was obsoleted because it represents a molecular function.
obsolete catabolism by organism of macromolecule in other organism involved in symbiotic interaction (GO:0052361)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways performed by an organism resulting in the breakdown of macromolecules within a second organism, where the two organisms are in a symbiotic interaction.
Synonyms: catabolism by organism of macromolecule in other organism during symbiotic interaction
Comment: This term was obsoleted because it represents an unnecessary grouping class.
obsolete catabolism by host of symbiont xylan (GO:0052365)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways performed by an organism resulting in the breakdown of xylan within the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.
Comment: This term was obsoleted because there is no evidence it exists.
obsolete catabolism by organism of xylan in other organism involved in symbiotic interaction (GO:0052366)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways performed by an organism resulting in the breakdown of xylan within a second organism, where the two organisms are in a symbiotic interaction.
Synonyms: catabolism by organism of xylan in other organism during symbiotic interaction
Comment: This term was obsoleted because it represents an unnecessary grouping class.
obsolete negative regulation by symbiont of entry into host (GO:0052374)
Namespace: biological_process
Definition: OBSOLETE. Any process in which an organism stops, prevents, or reduces the frequency, rate or extent to which it enters into the host organism, where the two organisms are in a symbiotic interaction.
Synonyms: down regulation by symbiont of entry into host; down-regulation by symbiont of entry into host; downregulation by symbiont of entry into host; inhibition by symbiont of entry into host
Comment: This term was obsoleted because there is no evidence that this process exists.
obsolete metabolism by organism of carbohydrate in other organism involved in symbiotic interaction (GO:0052407)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways performed by an organism involving carbohydrates within a second organism, where the two organisms are in a symbiotic interaction.
Synonyms: metabolism by organism of carbohydrate in other organism during symbiotic interaction
Comment: This term was obsoleted because it represents an unnecessary grouping class.
obsolete metabolism by host of symbiont cell wall pectin (GO:0052412)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways performed by an organism involving pectin in the cell wall of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.
Comment: This term was obsoleted because there is no evidence it exists.
obsolete modification by organism of symbiont morphology or physiology via protein secreted by type III secretion system (GO:0052424)
Namespace: biological_process
Definition: OBSOLETE. The process by which an organism effects a change in the structure or function of its symbiont organism, mediated by a substance secreted by a type III secretion system in the organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.
Synonyms: modification by organism of symbiont morphology or physiology via protein secreted by type III secretion system
Comment: This term was made obsolete because it does not represent a real biological process.
obsolete modulation by host of symbiont RNA levels (GO:0052430)
Namespace: biological_process
Definition: OBSOLETE. The alteration by an organism of the levels of RNA in a symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.
Comment: This term was obsoleted because it represents a readout.
obsolete modulation by organism of symbiont inflammatory response (GO:0052451)
Namespace: biological_process
Definition: OBSOLETE. Any process by which an organism modulates the frequency, rate or extent of the inflammatory response of a symbiont organism; the inflammatory response is the immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.
Synonyms: modulation by organism of symbiont inflammatory response
Comment: This term was made obsolete because it does not represent a real biological process.
obsolete negative regulation by organism of symbiont innate immunity (GO:0052486)
Namespace: biological_process
Definition: OBSOLETE. Any process by which an organism stops, prevents, or reduces the frequency, rate or extent of the innate immune response of the symbiont organism, the symbiont's first line of defense against infection. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.
Synonyms: negative regulation by organism of symbiont innate immunity; negative regulation of symbiont innate immune response
Comment: This term was made obsolete because it does not represent a real biological process.
obsolete negative regulation by organism of symbiont salicylic acid-mediated defense response (GO:0052491)
Namespace: biological_process
Definition: OBSOLETE. Any process by which an organism stops, prevents, or reduces the frequency, rate or extent of the salicylic acid-mediated defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.
Synonyms: negative regulation by organism of symbiont salicylic acid-mediated defense response; negative regulation of symbiont SA-mediated defense response; suppression by organism of symbiont salicylic acid-mediated defense response; suppression of symbiont SA mediated defense response
Comment: This term was made obsolete because it does not represent a real biological process.
obsolete occlusion by host of symbiont xylem (GO:0052496)
Namespace: biological_process
Definition: OBSOLETE. The process in which an organism reduces the flow of fluid within the symbiont xylem, the tissue in plants that carries water and nutrients up from the roots to the shoot and leaves. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.
Comment: This term was obsoleted because this process is not known to exist.
obsolete positive regulation by host of symbiont phagocytosis (GO:0052521)
Namespace: biological_process
Definition: OBSOLETE. Any process in which an organism activates, maintains or increases the frequency, rate or extent of phagocytosis, the engulfing by phagocytes of external particulate material, in the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.
Synonyms: activation by host of symbiont phagocytosis; stimulation by host of symbiont phagocytosis; up regulation by host of symbiont phagocytosis; up-regulation by host of symbiont phagocytosis; upregulation by host of symbiont phagocytosis
Comment: This term was obsoleted because there is no evidence that this process exists.
obsolete positive regulation by host of symbiont signal transduction pathway (GO:0052525)
Namespace: biological_process
Definition: OBSOLETE. Any process in which an organism activates, maintains or increases the frequency, rate or extent of the symbiont signal transduction pathways, the cascade of processes by which a signal interacts with a receptor. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.
Synonyms: activation by host of symbiont signal transduction pathway; stimulation by host of symbiont signal transduction pathway; up regulation by host of symbiont signal transduction pathway; up-regulation by host of symbiont signal transduction pathway; upregulation by host of symbiont signal transduction pathway
Comment: The reason for obsoletion is that there is no evidence that the host can modulate or regulate a symbiont's signal transduction pathway.
obsolete upregulation by organism of symbiont programmed cell death (GO:0052528)
Namespace: biological_process
Definition: OBSOLETE. Any process by which an organism increases the frequency, rate or extent of programmed cell death in the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.
Synonyms: enhancement of symbiont programmed cell death by organism; upregulation by organism of symbiont programmed cell death
Comment: This term was made obsolete because it does not represent a real biological process.
defense response by callose deposition (GO:0052542)
Namespace: biological_process
Definition: Any process in which callose is transported to, and/or maintained in, a specific location during the defense response. Callose is a linear 1,3-beta-d-glucan formed from UDP-glucose and is found in certain plant cell walls.
Synonyms: callose deposition during defense response; callose localization during defense response
regulation of peptidase activity (GO:0052547)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of peptidase activity, the hydrolysis of peptide bonds within proteins.
Synonyms: peptidase regulator activity
obsolete response to symbiont immune response (GO:0052571)
Namespace: biological_process
Definition: OBSOLETE. A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detecting the immune response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.
Synonyms: response to symbiont immune response
Comment: This term was made obsolete because it does not represent a real biological process.
obsolete oxidoreductase activity, acting on halogen in donors (GO:0052583)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of an oxidation-reduction in which a halogen in the donor substance acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
Comment: This term was obsoleted because EC obsoleted it, and there was no other evidence that this function exists.
obsolete propane-1,3-diamine oxidase activity (GO:0052600)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: propane-1,3-diamine + H2O + O2 = 3-aminopropanal + NH3 + hydrogen peroxide + H+.
Comment: This term was obsoleted because it represents a specific substrate of diamine oxidase activity ; GO:0052597.
obsolete 4-chloronitrobenzene nitroreductase activity (GO:0052602)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: 4-chloronitrobenzene + NADPH + H+ = 1-chloro-4-nitrosobenzene + NADP+ + H2O.
Comment: The reason for obsoletion is that this term is equivalent to GO:0018546.
coenzyme F420-0:L-glutamate ligase activity (GO:0052618)
Namespace: molecular_function
Definition: Catalysis of the reaction: GTP + L-glutamate + factor F420-0 = GDP + H+ + factor gamma-F420-1 + phosphate.
diguanylate cyclase activity (GO:0052621)
Namespace: molecular_function
Definition: Catalysis of the reaction: 2 GTP = cyclic di-3',5'-guanylate + 2 diphosphate + 2 H+.
Synonyms: GTP:GTP guanylyltransferase activity
N-vanillate-L-glutamate synthetase activity (GO:0052627)
Namespace: molecular_function
Definition: Catalysis of the reaction: vanillate + L-glutamate + ATP = N-vanillate-L-glutamate + AMP + diphosphate + H+.
Synonyms: vanillate amino acid synthetase activity
sphingolipid 8-(E/Z)-desaturase activity (GO:0052631)
Namespace: molecular_function
Definition: Catalysis of the reaction: an N-acyl-(4R)-4-hydroxysphinganine + 2 Fe(II)-[cytochrome b5] + 2 H+ + O2 = a (4R,8E)-4-hydroxysphingenine ceramide + 2 Fe(III)-[cytochrome b5] + 2 H2O or an N-acyl-(4R)-4-hydroxysphinganine + 2 Fe(II)-[cytochrome b5] + 2 H+ + O2 = (4R,8Z)-4-hydroxysphing-8-enine ceramide + 2 Fe(III)-[cytochrome b5] + 2 H2O. This results in the formation of a double bond between C8 and C9 of the long chain base of a sphingolipid.
Synonyms: 8 fatty acid desaturase; 8-sphingolipid desaturase; sphingolipid delta-8 desaturase activity
obsolete C-20 gibberellin 2-beta-dioxygenase activity (GO:0052635)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: a C-20 gibberellin + 2-oxoglutarate + O2 = a C-20 2-beta-hydroxygibberellin + succinate + CO2. C-20 gibberellin refers to a gibberellin with twenty carbons.
Synonyms: (C-20 gibberellin-1),2-oxoglutarate:oxygen oxidoreductase (2beta-hydroxylating); C(20) gibberellin 2-oxidase activity; C-20 GA 2-oxidase activity; C-20 gibberellin 2-beta-hydroxylase activity; C-20 gibberellin 2-oxidase activity; C-20 gibberellin 2beta-dioxygenase activity; C-20 gibberellin 2beta-hydroxylase activity
Comment: This term was obsoleted because it represents a specific substrate of gibberellin 2-beta-dioxygenase activity ; GO:0045543.
obsolete delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity (GO:0052637)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: 1-18:3-3-16:0-phosphatidylglycerol = 1-18:3-3-trans-16:1-phosphatidylglycerol + 2 H+. This reaction is the formation of a trans double bond between carbon 3 and carbon 4 (counting from the carboxyl end) of palmitic acid, which is specifically esterified to the sn-2 glyceryl carbon of phosphatidylglycerol.
Comment: This term was obsoleted because it represents the same reaction as palmitoyl-[glycerolipid] 3-(E)-desaturase activity ; GO:0102654.
salicylic acid glucosyltransferase (ester-forming) activity (GO:0052639)
Namespace: molecular_function
Definition: Catalysis of the reaction: salicylic acid + UDP-glucose = salicylic acid glucose ester + UDP.
Synonyms: salicylic acid glucosyltransferase activity; UDP:glucose:2-hydroxybenzoic acid glucosyltransferase (ester-forming) activity; UDP:glucose:SA glucosyltransferase (ester-forming) activity; UDP:glucose:salicylate glucosyltransferase (ester-forming) activity; UDP:glucose:salicylic acid glucosyltransferase (ester-forming) activity
ent-pimara-9(11),15-diene synthase activity (GO:0052674)
Namespace: molecular_function
Definition: Catalysis of the reaction: ent-copalyl diphosphate = ent-pimara-9(11),15-diene + diphosphate.
Synonyms: ent-copalyl-diphosphate diphosphate-lyase [ent-pimara-9(11),15-diene-forming] activity; PMD synthase activity
alpha-bisabolene synthase activity (GO:0052681)
Namespace: molecular_function
Definition: Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate = (E,R)-alpha-bisabolene + diphosphate.
Synonyms: (2E,6E)-farnesyl-diphosphate diphosphate-lyase [(E)-alpha-bisabolene-forming] activity; bisabolene synthase activity
epi-cedrol synthase activity (GO:0052682)
Namespace: molecular_function
Definition: Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate + H2O = epi-cedrol + diphosphate.
Synonyms: (2E,6E)-farnesyl-diphosphate diphosphate-lyase (8-epi-cedrol-forming) activity; 8-epicedrol synthase activity; epicedrol synthase activity
ergothioneine metabolic process (GO:0052698)
Namespace: biological_process
Definition: The chemical reactions and pathways involving ergothioneine, a naturally occurring metabolite of histidine with antioxidant properties.
Synonyms: (2S)-3-(2-mercapto-1H-imidazol-5-yl)-2-(trimethylazaniumyl)propanoate metabolic process; 2-mercaptoergothioneine trimethylbetaine metabolic process; 2-mercaptoergothioneine trimethylbetaine metabolism; ergothioneine metabolism
inositol hexakisphosphate 3-kinase activity (GO:0052724)
Namespace: molecular_function
Definition: Catalysis of the reaction: ATP + 1D-myo-inositol hexakisphosphate = ADP + 3-diphospho-1D-myo-inositol (1,2,4,5,6)pentakisphosphate.
inositol-1,3,4-trisphosphate 6-kinase activity (GO:0052725)
Namespace: molecular_function
Definition: Catalysis of the reaction: 1D-myo-inositol 1,3,4-trisphosphate + ATP = 1D-myo-inositol 1,3,4,6-tetrakisphosphate + ADP + H+.
Synonyms: 1D-myo-inositol-trisphosphate 6-kinase activity; inositol 1,3,4-trisphosphate 6-kinase activity; inositol-trisphosphate 6-kinase activity; ins(1,3,4)P(3) 6-kinase activity; Ins(1,3,4)P3 6-kinase activity; IP3 6-kinase activity
quinate 3-dehydrogenase (NADP+) activity (GO:0052733)
Namespace: molecular_function
Definition: Catalysis of the reaction: quinate + NADP+ = 3-dehydroquinate + NADPH + H+.
Synonyms: quinate:NADP 3-oxidoreductase activity; quinate:NADP(+) 3-oxidoreductase activity; quinic dehydrogenase activity
beta-glucanase activity (GO:0052736)
Namespace: molecular_function
Definition: Catalysis of the hydrolysis of linkages in beta-D-glucans; beta-glucans are polysaccharides of D-glucose monomers linked by beta-glycosidic bonds.
Synonyms: beta-D-glucanase activity
pyruvate dehydrogenase (quinone) activity (GO:0052737)
Namespace: molecular_function
Definition: Catalysis of the reaction: a ubiquinone + H2O + pyruvate = a ubiquinol + acetate + CO2.
Synonyms: pyruvate dehydrogenase activity; pyruvate:ubiquinone oxidoreductase activity; pyruvate:ubiquinone-8-oxidoreductase activity; pyruvic dehydrogenase activity
obsolete inositol phosphorylation (GO:0052746)
Namespace: biological_process
Definition: OBSOLETE. The process of introducing one or more phosphate groups into inositol. Inositol is the cyclic alcohol 1,2,3,4,5,6-cyclohexanehexol, which is widely distributed in nature and acts as a growth factor in animals and microorganisms.
Synonyms: inositol and derivative phosphorylation; myo-inositol and derivative phosphorylation; myo-inositol phosphorylation
Comment: The reason for obsoletion is this is a single-step process.
GDP-mannose hydrolase activity (GO:0052751)
Namespace: molecular_function
Definition: Catalysis of the reaction: GDP-mannose + H2O = GMP + mannose-1-phosphate.
Synonyms: GDP-mannose pyrophosphatase activity
chondroitin hydrolase activity (GO:0052757)
Namespace: molecular_function
Definition: Catalysis of the hydrolysis of hexosaminic linkages in chondroitin, a linear polymer structure composed of the repeating disaccharide unit [->4)-D-glucuronic acid-(1->3)-N-acetyl-D-galactosamine-(1-], also written as [->4GlcUA1->3GalNAc1-].
Synonyms: chondroitin endo-beta-galactosaminidase activity
obsolete coenzyme F390-A hydrolase activity (GO:0052770)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: coenzyme F390-A = AMP + coenzyme F420.
Synonyms: 8-hydroxyadenylylated-coenzyme F420 hydrolase activity
Comment: This term was obsoleted because it is not known to be catalyzed by any gene product or it represents a specific substrate.
obsolete coenzyme F390-G hydrolase activity (GO:0052771)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: coenzyme F390-G = GMP + coenzyme F420.
Synonyms: 8-hydroxyguanylylated-coenzyme F420 hydrolase activity
Comment: This term was obsoleted because it is not known to be catalyzed by any gene product or it represents a specific substrate.
obsolete amino disaccharide metabolic process (GO:0052779)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving any amino disaccharide, a disaccharide having one or more substituted or unsubstituted amino groups in place of hydroxy groups at unspecified positions.
Comment: This term was obsoleted because it is an unnecessary grouping class.
alpha-linked polysaccharide catabolism to maltopentaose (GO:0052787)
Namespace: biological_process
Definition: The breakdown of large alpha-linked polysaccharides by hydrolysis of (1->4)-alpha-D-glucosidic linkages to yield maltopentaose.
Synonyms: alpha-amylase-mediated polysaccharide catabolism, producing maltopentaose; maltopentaose-forming alpha-amylase activity
obsolete exo-alpha-(2->8)-sialidase activity (GO:0052796)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the hydrolysis of alpha-(2->8)-glycosidic linkages of terminal sialic residues in substrates.
Synonyms: exo-alpha-(2,8)-sialidase activity; exo-alpha-2,8-sialidase activity
Comment: This term was obsoleted because it represents a specific substrate of exo-alpha-sialidase activity ; GO:0004308.
coenzyme F420-dependent bicyclic nitroimidazole catabolic process (GO:0052799)
Namespace: biological_process
Definition: The breakdown of a bicyclic nitroimidazole into simpler components in a process that requires coenzyme F420 and produces reactive nitrogen species. Hydride, from reduced coenzyme F420, is added to the bicyclic nitroimidazole, resulting in unstable substances that break down to form three stable products. The elimination of nitrous acid produces the corresponding des-nitroimidazole; hydrolysis produces a related compound; and further reduction creates an aromatic hydroxylamine metabolite that degrades further. These reactions release hyponitrous acid and nitrous acid, which is unstable and disproportionates into nitric oxide (NO) and other reactive nitrogen intermediates.
Synonyms: coenzyme F420-dependent nitroimidazole breakdown; coenzyme F420-dependent nitroimidazole catabolism; coenzyme F420-dependent nitroimidazole reduction; coenzyme F420-dependent nitroreductase activity
obsolete bicyclic nitroimidazole metabolic process (GO:0052801)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving bicyclic nitroimidazoles, imidazole derivatives with two rings and a nitro group attached to one ring.
Synonyms: bicyclic nitroimidazole metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
obsolete nitroimidazole metabolic process (GO:0052802)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving nitroimidazoles, imidazole derivatives with a nitro group attached to one ring.
Synonyms: nitroimidazole metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.