LiteFold/GO huggingface dataset:
response to flooding (GO:0009413)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating flooding, short-term immersion in water.
Comment: Note that this term should not be confused with 'response to deep water ; GO:0030912'. Flooding refers to short-term immersion, whereas 'response to deep water ; GO:0030912' refers to standing in water throughout an organism's life cycle.
chorismate biosynthetic process (GO:0009423)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of the unsymmetrical ether derived from phosphoenolpyruvate and 5-phosphoshikimic acid formed as an intermediate in the biosynthesis of aromatic amino acids and many other compounds.
Synonyms: chorismate anabolism; chorismate biosynthesis; chorismate formation; chorismate synthesis; shikimate anabolism; shikimate biosynthesis; shikimate biosynthetic process; shikimate pathway; shikimate synthesis
obsolete cyanate metabolic process (GO:0009439)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving cyanate, NCO-, the anion of cyanic acid.
Synonyms: cyanate metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
obsolete cytochrome (GO:0009458)
Namespace: molecular_function
Definition: OBSOLETE. A hemeprotein whose characteristic mode of action involves transfer of reducing equivalents associated with a reversible change in oxidation state of the prosthetic group. This redox change involves a single electron, reversible equilibrium between the Fe(II) and Fe(III) states of the central iron atom.
Synonyms: cytochrome
Comment: This term was made obsolete because it represents a gene product.
obsolete cytochrome c3 (tetraheme) (GO:0009472)
Namespace: molecular_function
Definition: OBSOLETE. (Was not defined before being made obsolete).
Synonyms: cytochrome c3 (tetraheme)
Comment: This term was made obsolete because it represents a gene product.
obsolete nonaheme cytochrome c (GO:0009474)
Namespace: molecular_function
Definition: OBSOLETE. (Was not defined before being made obsolete).
Synonyms: nonaheme cytochrome c
Comment: This term was made obsolete because it represents a gene product.
obsolete rubredoxin (GO:0009489)
Namespace: molecular_function
Definition: OBSOLETE. A low molecular weight mononuclear iron protein involved in electron transfer, with an iron tetrahedrally coordinated by the sulfurs of four conserved cysteine residues.
Synonyms: rubredoxin
Comment: This term was made obsolete because it does not represent a molecular function.
photosystem (GO:0009521)
Namespace: cellular_component
Definition: A complex located in a photosynthetic membrane that consists of a photoreaction center associated with accessory pigments and electron carriers. Examples of this component are found in Arabidopsis thaliana and in photosynthetic bacterial and archaeal species.
Synonyms: reaction center; reaction centre
plastid intermembrane space (GO:0009529)
Namespace: cellular_component
Definition: The region between the inner and outer lipid bilayers of the plastid envelope.
Synonyms: plastid envelope lumen
proplastid (GO:0009537)
Namespace: cellular_component
Definition: The precursor of other plastids.
chloroplast ribulose bisphosphate carboxylase complex (GO:0009573)
Namespace: cellular_component
Definition: A complex, located in the chloroplast, containing either both large and small subunits or just small subunits which carries out the activity of producing 3-phosphoglycerate from carbon dioxide and ribulose-1,5-bisphosphate. An example of this component is found in Arabidopsis thaliana.
Synonyms: chloroplast RubisCO complex
chromoplast stroma (GO:0009575)
Namespace: cellular_component
Definition: The space enclosed by the double membrane of a chromoplast but excluding the photosynthetic material.
detection of visible light (GO:0009584)
Namespace: biological_process
Definition: The series of events in which a visible light stimulus is received by a cell and converted into a molecular signal. A visible light stimulus is electromagnetic radiation that can be perceived visually by an organism; for organisms lacking a visual system, this can be defined as light with a wavelength within the range 380 to 780 nm.
Synonyms: perception of visible light
obsolete phototrophin mediated phototransduction (GO:0009587)
Namespace: biological_process
Definition: OBSOLETE. (Was not defined before being made obsolete).
Synonyms: phototrophin mediated phototransduction
detection of UV (GO:0009589)
Namespace: biological_process
Definition: The series of events in which an ultraviolet radiation (UV light) stimulus is received and converted into a molecular signal. Ultraviolet radiation is electromagnetic radiation with a wavelength in the range of 10 to 380 nanometers.
Synonyms: detection of ultraviolet light stimulus; detection of ultraviolet radiation stimulus; detection of UV light stimulus; detection of UV radiation stimulus; perception of UV
plant-type hypersensitive response (GO:0009626)
Namespace: biological_process
Definition: The rapid, localized death of plant cells in response to invasion by a pathogen.
Synonyms: HR; HR-PCD; plant hypersensitive response
Comment: Note that term is to be used to annotate gene products in the plant. To annotate symbiont gene products that induce the hypersensitive response, consider using 'effector-mediated activation of plant hypersensitive response by symbiont' ; GO:0080185.
response to abiotic stimulus (GO:0009628)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abiotic (not derived from living organisms) stimulus.
Synonyms: response to abiotic stress
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
photosynthetic acclimation (GO:0009643)
Namespace: biological_process
Definition: A response to light intensity in which exposure to medium-intensity light results in increased tolerance to high-intensity light.
Synonyms: light acclimatization; photoacclimation
response to low light intensity stimulus (GO:0009645)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a low light intensity stimulus. Low light intensity is defined as a level of electromagnetic radiation at or below 0.1 micromols/m2.
plastid outer membrane organization (GO:0009666)
Namespace: biological_process
Definition: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the outer membrane of a plastid.
Synonyms: plastid outer membrane organisation; plastid outer membrane organization and biogenesis
auxin:proton symporter activity (GO:0009672)
Namespace: molecular_function
Definition: Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: auxin(out) + H+(out) = auxin(in) + H+(in).
Synonyms: auxin:hydrogen symporter activity
double fertilization forming two zygotes (GO:0009677)
Namespace: biological_process
Definition: Rudimentary double fertilization where one of the two sperm nuclei from the pollen tube fuses with the egg nucleus to form a 2n zygote, and the other fuses with the ventral canal cell nucleus to form a second zygote, which soon degenerates. An example of this process is found in the Gnetophytes, such as Welwitschia mirabilis.
detection of auxin stimulus (GO:0009721)
Namespace: biological_process
Definition: The series of events in which an auxin stimulus is received by a cell and converted into a molecular signal.
Synonyms: perception of auxin stimulus
response to ethylene (GO:0009723)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethylene (ethene) stimulus.
Synonyms: response to ethene stimulus; response to ethylene stimulus
response to auxin (GO:0009733)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus.
Synonyms: response to auxin stimulus
abscisic acid-activated signaling pathway (GO:0009738)
Namespace: biological_process
Definition: The series of molecular signals generated by the binding of the plant hormone abscisic acid (ABA) to a receptor, and ending with modulation of a cellular process, e.g. transcription.
Synonyms: ABA signal transduction; ABA signaling; abscisic acid mediated signalling; abscisic acid signal transduction; abscisic acid-mediated signaling pathway
NADP-malic enzyme C4 photosynthesis (GO:0009762)
Namespace: biological_process
Definition: The process of C4 photosynthesis, as it occurs in plants in which the enzyme decarboxylating C4 acids in the bundle sheath is NADP-malic enzyme.
embryo development ending in seed dormancy (GO:0009793)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana.
Synonyms: embryogenesis
specification of symmetry (GO:0009799)
Namespace: biological_process
Definition: The establishment of an organism's body plan or part of an organism such that a similar arrangement in form and relationship of parts around a common axis, or around each side of a plane is created.
Synonyms: determination of symmetry
obsolete SCF complex substrate recognition subunit (GO:0009839)
Namespace: cellular_component
Definition: OBSOLETE. The portion of the SCF ubiquitin ligase complex that contains sites required for recognition (and recruitment) of the substrate to the complex.
Synonyms: SCF complex substrate recognition subunit
Comment: This term was made obsolete because it represents a single gene product and not a complex.
tryptophan-independent indoleacetic acid biosynthetic process (GO:0009849)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of indoleacetic acid, independent of tryptophan.
Synonyms: indoleacetic acid biosynthesis, tryptophan-independent; indoleacetic acid biosynthetic process, tryptophan-independent; tryptophan-independent IAA biosynthetic process; tryptophan-independent indoleacetic acid anabolism; tryptophan-independent indoleacetic acid biosynthesis; tryptophan-independent indoleacetic acid formation; tryptophan-independent indoleacetic acid synthesis
pollen tube adhesion (GO:0009865)
Namespace: biological_process
Definition: The process in which the pollen tube adheres to cells of the stigma and style.
blue light photoreceptor activity (GO:0009882)
Namespace: molecular_function
Definition: The function of absorbing and responding to electromagnetic radiation with a wavelength of approximately 400-470nm. The response may involve a change in conformation.
cytokinin receptor activity (GO:0009884)
Namespace: molecular_function
Definition: Combining with a cytokinin and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.
regulation of biosynthetic process (GO:0009889)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of substances.
Synonyms: regulation of anabolism; regulation of biosynthesis; regulation of formation; regulation of synthesis
response to photoperiod, blue light (GO:0009906)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of the detection of a blue light photoperiod stimulus. Blue light is electromagnetic radiation with a wavelength of between 440 and 500nm.
epidermal cell differentiation (GO:0009913)
Namespace: biological_process
Definition: The process in which a relatively unspecialized cell acquires specialized features of an epidermal cell, any of the cells making up the epidermis.
Synonyms: hypodermal cell differentiation
obsolete octadecanal decarbonylase activity (GO:0009924)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: octadecanal = heptadecane + CO.
Synonyms: octadecanal alkane-lyase activity
Comment: This term was obsoleted because it represents a specific substrate of aldehyde decarbonylase activity ; GO:0071771.
meristem structural organization (GO:0009933)
Namespace: biological_process
Definition: Organization of a region of tissue in a plant that is composed of one or more undifferentiated cells capable of undergoing mitosis and differentiation, thereby effecting growth and development of a plant by giving rise to more meristem or specialized tissue.
Synonyms: meristem organisation; meristem organization
regulation of meristem structural organization (GO:0009934)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of meristem organization.
Synonyms: regulation of meristem organisation; regulation of meristem organization
polarity specification of dorsal/ventral axis (GO:0009951)
Namespace: biological_process
Definition: Any process resulting in the establishment of polarity along the dorsal/ventral axis.
Synonyms: polarity specification of dorsal-ventral axis; polarity specification of dorsoventral axis
negative gravitropism (GO:0009959)
Namespace: biological_process
Definition: The orientation of plant parts away from gravity.
Synonyms: shoot gravitropism
obsolete dihydroflavonol(thiole) lyase activity (GO:0009985)
Namespace: molecular_function
Definition: OBSOLETE. (Was not defined before being made obsolete).
Synonyms: dihydroflavonol(thiole) lyase activity
Comment: This term was made obsolete because there is no record of why it was added, and no evidence can be found to suggest that this activity exists.
meiotic chromosome condensation (GO:0010032)
Namespace: biological_process
Definition: Compaction of chromatin structure prior to meiosis in eukaryotic cells.
Synonyms: chromosome condensation involved in meiotic cell cycle
response to mycotoxin (GO:0010046)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mycotoxin stimulus. A mycotoxin is a toxic chemical substance produced by fungi.
trichoblast differentiation (GO:0010054)
Namespace: biological_process
Definition: The process in which a relatively unspecialized cell acquires the specialized features of a trichoblast, a root epidermal cell that will give rise to a root hair.
Synonyms: trichoblast cell differentiation
negative regulation of trichoblast fate specification (GO:0010062)
Namespace: biological_process
Definition: Any process that suppresses trichoblast fate specification.
Synonyms: down regulation of trichoblast fate; down-regulation of trichoblast fate; downregulation of trichoblast fate; inhibition of trichoblast fate
positive regulation of trichoblast fate specification (GO:0010063)
Namespace: biological_process
Definition: Any process that induces or promotes trichoblast fate specification.
Synonyms: activation of trichoblast fate; stimulation of trichoblast fate; up regulation of trichoblast fate; up-regulation of trichoblast fate; upregulation of trichoblast fate
root meristem specification (GO:0010071)
Namespace: biological_process
Definition: The specification of a meristem which will give rise to a primary or lateral root.
specification of animal organ axis polarity (GO:0010084)
Namespace: biological_process
Definition: The process in which the polarity of an animal organ axis is specified.
glyoxysome organization (GO:0010111)
Namespace: biological_process
Definition: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the glyoxysome. A glyoxysome is a microbody that contains the enzymes of the glyoxylate pathway.
Synonyms: glyoxysome organisation; glyoxysome organization and biogenesis
photoprotection (GO:0010117)
Namespace: biological_process
Definition: Protection mechanism used by plants and cyanobacteria under conditions of excess energy absorption as a consequence of the light reactions of photosynthesis.
benzoate catabolic process via CoA ligation (GO:0010128)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of benzoate, by its ligation to Coenzyme A to form benzoyl-CoA, which is then broken by an aerobic or anaerobic pathway.
Synonyms: anaerobic benzoate breakdown; anaerobic benzoate catabolic process; anaerobic benzoate catabolism; anaerobic benzoate degradation
obsolete sporocyte morphogenesis (GO:0010156)
Namespace: biological_process
Definition: OBSOLETE. Formation and development of sporocyte, the haploid spores of angiosperms which are initiated by the differentiation of a subset of floral cells into sporocytes, which then undergo meiotic divisions to form microspores and megaspores.
Synonyms: sporocyte morphogenesis
Comment: This term was made obsolete because it was incorrectly defined.
formation of animal organ boundary (GO:0010160)
Namespace: biological_process
Definition: The regionalization process that specifies animal organ primordium boundaries resulting in a restriction of organogenesis to a limited spatial domain and keeping the organ separate from surrounding tissues.
Synonyms: organ boundary specification
red light signaling pathway (GO:0010161)
Namespace: biological_process
Definition: The series of molecular signals initiated upon sensing of red light by a photoreceptor molecule. Red light is electromagnetic radiation of wavelength of 580-700nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs.
Synonyms: red light phototransduction; red light signal transduction; red light signalling pathway
organ boundary specification between lateral organs and the meristem (GO:0010199)
Namespace: biological_process
Definition: The process in which boundaries between lateral organs and the meristem is established and maintained.
pollen wall assembly (GO:0010208)
Namespace: biological_process
Definition: The formation of reticulate pollen wall pattern consisting of two layers, exine and intine.
Synonyms: pollen wall formation
IAA-Leu conjugate hydrolase activity (GO:0010211)
Namespace: molecular_function
Definition: Catalysis of the reaction: indole-3-acetyl-leucine + H2O = indole-3-acetate + L-leucine.
response to ionizing radiation (GO:0010212)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ionizing radiation stimulus. Ionizing radiation is radiation with sufficient energy to remove electrons from atoms and may arise from spontaneous decay of unstable isotopes, resulting in alpha and beta particles and gamma rays. Ionizing radiation also includes X-rays.
Synonyms: response to ionising radiation; response to ionizing radiation stimulus
seed coat development (GO:0010214)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the seed coat over time, from its formation to the mature structure.
alternative respiration (GO:0010230)
Namespace: biological_process
Definition: Alternative respiration pathway consumes oxygen, oxidizes NADH to NAD+ and generates water. During electron flow, proton motive force is diminished resulting in fewer molecules of ATP compared to cytochrome pathway. The pathway is found in plants, algae and some protozoa.
anther wall tapetum cell fate specification (GO:0010234)
Namespace: biological_process
Definition: The process in which a cell becomes capable of differentiating autonomously into a tapetal cell of anthers in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed.
Synonyms: tapetal cell fate specification
guard mother cell cytokinesis (GO:0010235)
Namespace: biological_process
Definition: The stereotyped symmetric cell division by which guard mother cell give rise to stomatal guard cells.
Synonyms: guard mother cell division
tricyclic triterpenoid biosynthetic process (GO:0010263)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of tricyclic triterpenoid compounds, terpenoids with 6 isoprene units and 3 carbon rings.
Synonyms: tricyclic triterpenoid anabolism; tricyclic triterpenoid biosynthesis; tricyclic triterpenoid formation; tricyclic triterpenoid synthesis
response to selenium ion (GO:0010269)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from selenium ion.
regulation of chlorophyll catabolic process (GO:0010271)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of chlorophyll.
indole-3-acetic acid amido synthetase activity (GO:0010279)
Namespace: molecular_function
Definition: Catalysis of the reaction: indole-3-acetic acid + an amino acid = an indole-3-acetic acid amide conjugate.
Synonyms: IAA amido synthetase activity; IAA amino acid conjugate synthetase activity; IAA amino acid synthetase activity
acireductone dioxygenase [iron(II)-requiring] activity (GO:0010309)
Namespace: molecular_function
Definition: Catalysis of the reaction: 1,2-dihydroxy-5-(methylthio)pent-1-en-3-one + O2 = 4-methylthio-2-oxobutanoate + formate + H+.
Synonyms: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase activity; 1,2-dihydroxy-5-(methylthio)pent-1-en-3-one:oxygen oxidoreductase (formate-forming); 2-hydroxy-3-keto-5-thiomethylpent-1-ene dioxygenase; aci-reductone dioxygenase; acireductone dioxygenase (Fe2+-requiring) activity; acireductone dioxygenase activity; ARD'; ARD1; E-2'
seed oilbody biogenesis (GO:0010344)
Namespace: biological_process
Definition: A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a seed oilbody. Seed oilbodies are simple organelles comprising a matrix of triglyceride surrounded by a phospholipid monolayer embedded and covered with unique proteins called oleosins. Seed oilbodies supply the energy requirements for the growth of the seedling after germination.
Synonyms: oleosome biogenesis; seed oil body organization; spherosome biogenesis