LiteFold/GO huggingface dataset:
obsolete octopamine signaling pathway involved in response to food (GO:0071935)
Namespace: biological_process
Definition: OBSOLETE. The series of molecular signals initiated by binding of octopamine to a receptor on the surface of the target cell that contributes to a response to a food stimulus.
Synonyms: octopamine signalling pathway involved in response to food
Comment: This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.
cell periphery (GO:0071944)
Namespace: cellular_component
Definition: The broad region around and including the plasma membrane of a cell, encompassing the cell cortex (inside the cell), the plasma membrane, and any external encapsulating structures.
elastic fiber (GO:0071953)
Namespace: cellular_component
Definition: An supramolecular fiber that consists of an insoluble core of polymerized tropoelastin monomers and a surrounding mantle of microfibrils. Elastic fibers provide elasticity and recoiling to tissues and organs, and maintain structural integrity against mechanical strain.
Synonyms: elastic fibre; elastin fiber
establishment or maintenance of cell polarity regulating cell shape (GO:0071963)
Namespace: biological_process
Definition: Any cellular process that results in the specification, formation or maintenance of a polarized intracellular organization or cell growth patterns that regulate the shape of a cell.
lipopolysaccharide core heptosyltransferase activity (GO:0071967)
Namespace: molecular_function
Definition: Catalysis of the reaction: glucosyl-heptosyl2-KDO2-lipid A-phosphate + ADP-L-glycero-beta-D-manno-heptose = glucosyl-heptosyl3-KDO2-lipid A-phosphate + ADP + H+.
Synonyms: LPS core heptosyltransferase activity
extracellular exosome assembly (GO:0071971)
Namespace: biological_process
Definition: The aggregation, arrangement and bonding together of a set of components to form an extracellular vesicular exosome, a membrane-bounded vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Exosomes are defined by their size, which generally ranges from 30 nm to 100 nm.
Synonyms: extracellular vesicular exosome assembly
protein localization to spindle pole body (GO:0071988)
Namespace: biological_process
Definition: A process in which a protein is transported to, or maintained at, the spindle pole body.
Synonyms: protein localisation to spindle pole body
phytochelatin import into vacuole (GO:0071995)
Namespace: biological_process
Definition: The directed movement of phytochelatins into the vacuole. Phytochelatins are a group of peptides that bind metals (Cd, Zn, Cu, Pb, Hg) in thiolate coordination complexes.
Synonyms: cadystin import into vacuole; phytochelatin transport into vacuole
obsolete extracellular polysaccharide catabolic process (GO:0071999)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the breakdown of polysaccharides used in extracellular structures.
Synonyms: extracellular polysaccharide breakdown; extracellular polysaccharide catabolism; extracellular polysaccharide degradation
Comment: The reason for obsoletion is that this term is now redundant with GO:0000272, polysaccharide catabolic process
podocyte development (GO:0072015)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of a glomerular visceral epithelial cell over time, from its formation to the mature structure. A glomerular visceral epithelial cell is a specialized epithelial cell that contains 'feet' that interdigitate with the 'feet' of other glomerular epithelial cells.
Synonyms: glomerular visceral epithelial cell development
proximal convoluted tubule development (GO:0072019)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the proximal convoluted tubule over time, from its formation to the mature structure. The proximal convoluted tubule is the most proximal portion of the proximal tubule and extends from the glomerular capsule to the proximal straight tubule.
thick ascending limb development (GO:0072023)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the thick ascending limb over time, from its formation to the mature structure. The thick ascending limb is the last part of the loop of Henle. Its thick, mitochondria-rich epithelium characterizes the outer medulla, and is responsible for very avid active salt transport. At the macula densa, the thick ascending limb connects to the distal convoluted tubule.
Synonyms: TAL development
regulation of pre-tubular aggregate formation by cell-cell signaling (GO:0072043)
Namespace: biological_process
Definition: Any process that mediates the transfer of information from one cell to another that modulates the rate, frequency, or extent of pre-tubular aggregate formation. Pre-tubular aggregate formation is the cell adhesion process in which mesenchymal cells adhere to one another in the initial stages of the formation of the pre-tubular aggregate, the earliest recognizable structure of the kidney.
Synonyms: regulation of pre-tubular aggregate formation by cell-cell signalling
renal system pattern specification (GO:0072048)
Namespace: biological_process
Definition: Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate into the anatomical structures of the renal system.
Synonyms: renal system pattern formation
kidney stroma development (GO:0072072)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the kidney stroma over time, from its formation to the mature structure. The kidney stroma is the mesenchyme of the mature kidney.
kidney mesenchyme development (GO:0072074)
Namespace: biological_process
Definition: The biological process whose specific outcome is the progression of a kidney mesenchyme from an initial condition to its mature state. This process begins with the formation of kidney mesenchyme and ends with the mature structure. Kidney mesenchyme is the tissue made up of loosely connected mesenchymal cells in the kidney.
nephrogenic mesenchyme development (GO:0072076)
Namespace: biological_process
Definition: The biological process whose specific outcome is the progression of a nephrogenic mesenchyme from an initial condition to its mature state. This process begins with the formation of nephrogenic mesenchyme and ends with the mature structure. Nephrogenic mesenchyme is the tissue made up of loosely connected mesenchymal cells in the nephron.
stem cell proliferation (GO:0072089)
Namespace: biological_process
Definition: The multiplication or reproduction of stem cells, resulting in the expansion of a stem cell population. A stem cell is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells.
regulation of stem cell proliferation (GO:0072091)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of stem cell proliferation. A stem cell is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells.
head kidney formation (GO:0072117)
Namespace: biological_process
Definition: The developmental process pertaining to the initial formation of the head kidney. The head kidney is a pronephros that consists of fused bilateral lobes located in the anterior part of the kidney.
extraglomerular mesangial cell proliferation (GO:0072122)
Namespace: biological_process
Definition: The multiplication or reproduction of extraglomerular glomerular mesangium cells by cell division, resulting in the expansion of their population. Extraglomerular mesangial cells (also known as lacis cells, Goormaghtigh cells) are light-staining cells in the kidney found outside the glomerulus, near the vascular pole and macula densa.
Synonyms: Goormaghtigh proliferation; lacis cell proliferation
negative regulation of glomerular mesangial cell proliferation (GO:0072125)
Namespace: biological_process
Definition: Any process that decreases the frequency, rate or extent of glomerular mesangial cell proliferation.
mesenchymal cell proliferation involved in ureteric bud development (GO:0072138)
Namespace: biological_process
Definition: The multiplication or reproduction of cells, resulting in the expansion of a mesenchymal cell population of the ureteric bud, that contributes to ureteric bud development.
Synonyms: ureteric bud mesenchymal cell proliferation
podocyte cell fate commitment (GO:0072149)
Namespace: biological_process
Definition: The process in which the developmental fate of a cell becomes restricted such that it will develop into a glomerular visceral epithelial cell. A glomerular visceral epithelial cell is a specialized epithelial cell that contains 'feet' that interdigitate with the 'feet' of other glomerular epithelial cells.
Synonyms: glomerular visceral epithelial cell fate commitment
proximal convoluted tubule segment 1 cell fate commitment (GO:0072154)
Namespace: biological_process
Definition: The process in which the developmental fate of a cell becomes restricted such that it will develop into an S1 cell in the kidney.
Synonyms: S1 cell fate commitment
obsolete epithelial cell migration involved in nephron tubule morphogenesis (GO:0072155)
Namespace: biological_process
Definition: OBSOLETE. The orderly movement of epithelial cells within a renal tubule that contributes to nephron tubule morphogenesis.
Comment: This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.
mesonephric tubule morphogenesis (GO:0072171)
Namespace: biological_process
Definition: The process in which the anatomical structures of a mesonephric tubule are generated and organized. A mesonephric tubule is an epithelial tube that is part of the mesonephros.
mesonephric duct development (GO:0072177)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of a mesonephric duct over time, from its initial formation to a mature structure. A mesonephric duct is a tube drains the mesonephros.
Synonyms: Wolffian duct development
renal vesicle progenitor cell differentiation (GO:0072184)
Namespace: biological_process
Definition: The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the renal vesicle progenitor cells of the kidney as it progresses from its formation to the mature state. A renal vesicle progenitor cell is a cell that will give rise to terminally differentiated cells of the renal vesicle without self-renewing.
ureter development (GO:0072189)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the ureter over time, from its formation to the mature structure. The ureter is a muscular tube that transports urine from the kidney to the urinary bladder or from the Malpighian tubule to the hindgut.
kidney smooth muscle tissue development (GO:0072194)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of smooth muscle in the kidney over time, from its formation to the mature structure.
obsolete cell differentiation involved in metanephros development (GO:0072202)
Namespace: biological_process
Definition: OBSOLETE. The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the cells of the metanephros as it progresses from its formation to the mature state.
Comment: This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.
metanephric smooth muscle tissue development (GO:0072208)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of smooth muscle in the metanephros over time, from its formation to the mature structure.
obsolete regulation of transcription from RNA polymerase II promoter involved in metanephros development (GO:0072212)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the branching morphogenesis by which the metanephros progresses from its initial formation to the mature state.
Comment: This term was obsoleted because it represents a GO-CAM model.
regulation of metanephros development (GO:0072215)
Namespace: biological_process
Definition: Any process that modulates the rate, frequency or extent of metanephros development. Metanephros development is the process whose specific outcome is the progression of the metanephros over time, from its formation to the mature structure. The metanephros is an endocrine and metabolic organ that filters the blood and excretes the end products of body metabolism in the form of urine.
metanephric early distal convoluted tubule development (GO:0072222)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the metanephric early distal convoluted tubule over time, from its formation to the mature structure. The metanephric early distal convoluted tubule contains metanephric DCT cells and is vasopressin-insensitive.
metanephric glomerular mesangium development (GO:0072223)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the metanephric glomerular mesangium over time, from its formation to the mature structure. The metanephric glomerular mesangium is the thin membrane connective tissue composed of mesangial cells in the metanephros, which helps to support the capillary loops in a renal glomerulus.
metanephric nephron tubule development (GO:0072234)
Namespace: biological_process
Definition: The progression of a metanephric nephron tubule over time, from its initial formation to the mature structure. A metanephric nephron tubule is an epithelial tube that is part of the metanephric nephron, the functional part of the metanephros.
metanephric loop of Henle development (GO:0072236)
Namespace: biological_process
Definition: The process whose specific outcome is the progression of the metanephric loop of Henle over time, from its formation to the mature structure. The metanephric loop of Henle is a metanephric nephron tubule that connects the proximal convoluted tubule to the distal convoluted tubule in the metanephros.
Synonyms: metanephric intermediate tubule development
metanephric nephron tubule epithelial cell differentiation (GO:0072257)
Namespace: biological_process
Definition: The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the cells of the metanephric nephron tubule as it progresses from its formation to the mature state.
metanephric interstitial fibroblast fate commitment (GO:0072260)
Namespace: biological_process
Definition: The process in which the developmental fate of a cell becomes restricted such that it will develop into a metanephric interstitial fibroblast.
Synonyms: metanephros interstitial cell fate commitment
obsolete convergent extension involved in metanephric nephron morphogenesis (GO:0072279)
Namespace: biological_process
Definition: OBSOLETE. The morphogenetic process in which the renal epithelium narrows along one axis and lengthens in a perpendicular axis that contributes to the shaping of a nephron in the metanephros.
Comment: This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.
metanephric nephron tubule morphogenesis (GO:0072282)
Namespace: biological_process
Definition: The process in which the anatomical structures of a metanephric nephron tubule are generated and organized. A metanephric nephron tubule is an epithelial tube that is part of the metanephric nephron, the functional part of the metanephros.
metanephric renal vesicle morphogenesis (GO:0072283)
Namespace: biological_process
Definition: The process in which the anatomical structures of the metanephric renal vesicle are generated and organized. The renal vesicle is the primordial structure of the metanephric nephron epithelium, and is formed by the condensation of mesenchymal cells.
negative regulation of metanephric glomerulus development (GO:0072299)
Namespace: biological_process
Definition: Any process that decreases the rate, frequency or extent of metanephric glomerulus development, the progression of the metanephric glomerulus over time from its initial formation until its mature state. The metanephric glomerulus is a capillary tuft surrounded by Bowman's capsule in nephrons of the vertebrate kidney, or metanephros.
positive regulation of metanephric glomerulus development (GO:0072300)
Namespace: biological_process
Definition: Any process that increases the rate, frequency or extent of metanephric glomerulus development, the progression of the metanephric glomerulus over time from its initial formation until its mature state. The metanephric glomerulus is a capillary tuft surrounded by Bowman's capsule in nephrons of the vertebrate kidney, or metanephros.
obsolete obsolete regulation of mesenchymal cell apoptotic process involved in metanephric nephron morphogenesis (GO:0072304)
Namespace: biological_process
Definition: OBSOLETE. OBSOLETE. Any process that modulates the occurrence or rate of mesenchymal stem cell death by apoptotic process that contributes to the shaping of the nephron in the metanephros.
Synonyms: regulation of mesenchymal stem cell apoptosis involved in metanephric nephron morphogenesis; regulation of mesenchymal stem cell apoptotic process involved in metanephric nephron morphogenesis
Comment: This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.
metanephric glomerular epithelial cell fate commitment (GO:0072315)
Namespace: biological_process
Definition: The process in which the developmental fate of a cell becomes restricted such that it will develop into a metanephric glomerular epithelial cell. Metanephric glomerular epithelial cells are specialized epithelial cells that form part of the metanephric glomerulus; there are two types, metanephric glomerular parietal epithelial cells and metanephric glomerular visceral epithelial cells.
monocarboxylic acid catabolic process (GO:0072329)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of monocarboxylic acids, any organic acid containing one carboxyl (-COOH) group.
signal transduction by p53 class mediator (GO:0072331)
Namespace: biological_process
Definition: An intracellular signaling process that is induced by the cell cycle regulator phosphoprotein p53 or an equivalent protein.
obsolete regulation of lipid transport by regulation of transcription from RNA polymerase II promoter (GO:0072367)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of lipid transport by modulating the frequency, rate or extent of transcription from an RNA polymerase II promoter.
Synonyms: regulation of lipid transport by regulation of transcription from an RNA polymerase II promoter
Comment: This term was obsoleted because it represents a GO-CAM model.
response to cytokinesis checkpoint signaling (GO:0072399)
Namespace: biological_process
Definition: A process that occurs in response to signals generated as a result of cytokinesis checkpoint signaling.
Synonyms: cytokinesis checkpoint effector process; response to signal involved in cytokinesis checkpoint
response to mitotic cell cycle checkpoint signaling (GO:0072414)
Namespace: biological_process
Definition: A process that occurs in response to signals generated as a result of mitotic cell cycle checkpoint signaling.
Synonyms: mitotic cell cycle checkpoint effector process; mitotic cell cycle G1/S checkpoint effector process; mitotic G2/M transition checkpoint effector process; response to mitotic cell cycle G1/S checkpoint signaling; response to mitotic G2/M transition checkpoint signal; response to signal involved in mitotic cell cycle checkpoint; response to signal involved in mitotic cell cycle G1/S checkpoint; response to signal involved in mitotic G2/M transition checkpoint
obsolete detection of DNA damage stimulus involved in intra-S DNA damage checkpoint (GO:0072427)
Namespace: biological_process
Definition: OBSOLETE. The series of events in which information about damage to DNA is received and converted into a molecular signal, contributing to an intra-S DNA damage checkpoint.
Synonyms: intra-S DNA damage checkpoint sensor mechanism; intra-S DNA damage checkpoint sensor process; sensing involved in intra-S DNA damage checkpoint
Comment: This term was obsoleted because it corresponds to a molecular function.
obsolete detection of stimulus involved in mitotic DNA replication checkpoint (GO:0072442)
Namespace: biological_process
Definition: OBSOLETE. The series of events in which information about whether DNA replication is complete is received and converted into a molecular signal, contributing to a mitotic DNA replication checkpoint.
Synonyms: detection of stimulus involved in S-M checkpoint; mitotic DNA replication checkpoint sensor mechanism; mitotic DNA replication checkpoint sensor process; S-M checkpoint sensor mechanism; S-M checkpoint sensor process; sensing involved in mitotic DNA replication checkpoint; sensing involved in S-M checkpoint
Comment: This term was obsoleted because it corresponds to a molecular function.
response to meiotic spindle assembly checkpoint signaling (GO:0072464)
Namespace: biological_process
Definition: A process that occurs in response to signals generated as a result of meiotic spindle assembly checkpoint signaling.
Synonyms: meiotic spindle assembly checkpoint effector process; response to signal involved in meiotic spindle assembly checkpoint
obsolete response to cell shape checkpoint signaling (GO:0072467)
Namespace: biological_process
Definition: OBSOLETE. A process that occurs in response to signals generated as a result of cell shape checkpoint signaling.
Synonyms: cell shape checkpoint effector process; response to signal involved in cell shape checkpoint
Comment: This term was made obsolete because it was ambiguous.
response to cell size control checkpoint signaling (GO:0072470)
Namespace: biological_process
Definition: A process that occurs in response to signals generated as a result of cell size control checkpoint signaling.
Synonyms: cell size control checkpoint effector process; response to mitotic cell cycle cell size control checkpoint signaling; response to signal involved in cell size control checkpoint
ammonium transmembrane transport (GO:0072488)
Namespace: biological_process
Definition: The process in which ammonium is transported across a membrane. Ammonium is the cation NH4+.
Synonyms: ammonia transport; ammonium membrane transport; ammonium transport
Comment: Note that this term is not intended for use in annotating lateral movement within membranes.
methylammonium transmembrane transport (GO:0072489)
Namespace: biological_process
Definition: The process in which methylammonium is transported across a membrane.
Synonyms: methylammonium membrane transport
Comment: Note that this term is not intended for use in annotating lateral movement within membranes.
obsolete cellular divalent inorganic anion homeostasis (GO:0072501)
Namespace: biological_process
Definition: OBSOLETE. Any process involved in the maintenance of an internal steady state of divalent inorganic anions at the level of a cell.
Comment: This term was obsoleted because it is an unnecessary grouping class.
obsolete cellular divalent inorganic cation homeostasis (GO:0072503)
Namespace: biological_process
Definition: OBSOLETE. Any process involved in the maintenance of an internal steady state of divalent cations at the level of a cell.
Comment: This term was obsoleted because it is an unnecessary grouping class.