LiteFold/GO huggingface dataset:
membrane raft localization (GO:0051665)
Namespace: biological_process
Definition: Any process in which membrane rafts are transported to, or maintained in, a specific location. Membrane rafts are small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes.
Synonyms: establishment and maintenance of membrane raft localization; lipid raft localization; membrane raft localisation
obsolete induction of autolysin activity in other organism (GO:0051671)
Namespace: biological_process
Definition: OBSOLETE. Any process in which an organism initiates the activity of the inactive enzyme autolysin in another organism. The autolysin enzyme belongs to, and is active in, the other organism.
Synonyms: activation of autolysin activity in another organism; activation of autolysis in other organism; activation of autolytic activity in other organism; induction of autolysin activity in another organism; induction of autolysis in other organism; induction of autolytic activity in other organism; positive regulation of autolysin activity in another organism
Comment: This term was obsoleted because it represents a molecular function.
maintenance of plastid location (GO:0051688)
Namespace: biological_process
Definition: Any process in which a plastid is maintained in a specific location within a cell and prevented from moving elsewhere.
Synonyms: maintenance of plastid localization
response to other organism (GO:0051707)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism.
GTP-dependent polyribonucleotide 5'-hydroxyl-kinase activity (GO:0051730)
Namespace: molecular_function
Definition: Catalysis of the reaction: GTP + 5'-dephospho-RNA = GDP + 5'-phospho-RNA.
Synonyms: GTP-dependent polyribonucleotide kinase activity; GTP-dependent RNA 5'-hydroxyl-kinase activity; GTP-dependent RNA kinase activity
polynucleotide 5'-hydroxyl-kinase activity (GO:0051731)
Namespace: molecular_function
Definition: Catalysis of the reaction: NTP + 5'-dephosphopolynucleotide = NDP + 5'-phosphopolynucleotide. The polynucleotide may be DNA or RNA.
Synonyms: 5'-dephosphopolynucleotide kinase activity; 5'-hydroxyl polynucleotide kinase activity; PNK; polynucleotide 5'-hydroxy-kinase activity; polynucleotide 5'-hydroxyl kinase (phosphorylating) activity; polynucleotide kinase activity
ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity (GO:0051736)
Namespace: molecular_function
Definition: Catalysis of the reaction: ATP + 5'-dephospho-RNA = ADP + 5'-phospho-RNA.
Synonyms: ATP-dependent polyribonucleotide kinase activity; ATP-dependent RNA kinase activity; polyribonucleotide 5'-hydroxyl-kinase activity
phosphoglucan, water dikinase activity (GO:0051752)
Namespace: molecular_function
Definition: Catalysis of the reaction: [(1->4)-6-phospho-alpha-D-glucosyl](n) + n ATP + n H2O = [(1->4)-3,6-bisphospho-alpha-alpha-glucosyl](n) + n AMP + 2n H+ + n phosphate.
Synonyms: ATP:phospho-alpha-glucan, water phosphotransferase activity; OK1; PWD
ent-kaurenoic acid monooxygenase activity (GO:0051777)
Namespace: molecular_function
Definition: Catalysis of the reaction:ent-kaur-16-en-19-oate + 3 O2 + 3 reduced [NADPH--hemoprotein reductase] = gibberellin A12 + 4 H+ + 4 H2O + 3 oxidized [NADPH--hemoprotein reductase]. Catalyzes three successive oxidations of ent-kaurenoic acid.
Synonyms: ent-kaurenoate oxidase activity; ent-kaurenoic acid oxidase activity
obsolete gibberellin 12-aldehyde oxidase activity (GO:0051779)
Namespace: molecular_function
Definition: OBSOLETE. Catalysis of the reaction: gibberellin 12-aldehyde + NADPH + H+ + O2 = gibberellin 12 + NADP+ + H2O. This is the third of three successive reactions resulting in the oxidation of ent-kaurenoate (ent-kaurenoic acid) to gibberellin 12 (GA12).
Synonyms: GA12-aldehyde oxidase activity
Comment: The reason for obsoletion is that the term is part of a 3-step reaction defined by EC:1.14.14.107.
positive regulation of nuclear division (GO:0051785)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of nuclear division, the partitioning of the nucleus and its genetic information.
Synonyms: activation of nuclear division; stimulation of nuclear division; up regulation of nuclear division; up-regulation of nuclear division; upregulation of nuclear division
regulation of timing of catagen (GO:0051794)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of timing of catagen, the regression phase of the hair cycle.
Synonyms: regulation of catagen
positive regulation of timing of catagen (GO:0051795)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of timing of catagen, the regression phase of the hair cycle.
Synonyms: activation of catagen; positive regulation of catagen; stimulation of catagen; up regulation of catagen; up-regulation of catagen; upregulation of catagen
obsolete negative regulation of cytolysis in other organism involved in symbiotic interaction (GO:0051803)
Namespace: biological_process
Definition: OBSOLETE. Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of cytolysis by that organism of cells in a second organism, where the two organisms are in a symbiotic interaction.
Synonyms: down regulation of cytolysis of cells in other organism during symbiotic interaction; down-regulation of cytolysis of cells in other organism during symbiotic interaction; downregulation of cytolysis of cells in other organism during symbiotic interaction; inhibition of cytolysis of cells in other organism during symbiotic interaction; negative regulation of cytolysis of cells in other organism during symbiotic interaction; negative regulation of cytolysis of cells in other organism involved in symbiotic interaction
Comment: This term was obsoleted because it represents an unnecessary grouping class.
sphinganine-1-phosphate catabolic process (GO:0051874)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of sphinganine-1-phosphate, the phosphorylated derivative of D-erythro-2-amino-1,3-octadecanediol.
Synonyms: dihydrosphingosine-1-phosphate catabolic process; dihydrosphingosine-1-phosphate catabolism
pigment granule dispersal (GO:0051876)
Namespace: biological_process
Definition: The directed movement of pigment granules within a cell towards the cell periphery.
regulation of mitochondrial depolarization (GO:0051900)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the change in the membrane potential of the mitochondria from negative to positive.
regulation of fibrinolysis (GO:0051917)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of fibrinolysis, an ongoing process that solubilizes fibrin, resulting in the removal of small blood clots.
gamma-aminobutyric acid reuptake (GO:0051936)
Namespace: biological_process
Definition: The uptake of gamma-aminobutyric acid (GABA, 4-aminobutyrate) by neurons or glial cells. This process leads to inactivation and recycling of neurotransmitters.
Synonyms: GABA import into glial cell; GABA import into neuron; GABA recycling; GABA reuptake; gamma-aminobutyric acid import into glial cell; gamma-aminobutyric acid import into neuron; gamma-aminobutyric acid recycling; gamma-aminobutyric acid uptake during transmission of nerve impulse; gamma-aminobutyric acid uptake involved in synaptic transmission
obsolete regulation of catecholamine uptake involved in synaptic transmission (GO:0051940)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of the directed movement of catecholamine neurotransmitters into a neuron or glial cell.
Synonyms: regulation of catecholamine neurotransmitter reuptake; regulation of catecholamine neurotransmitter uptake; regulation of catecholamine uptake during transmission of nerve impulse
Comment: This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.
positive regulation of transmission of nerve impulse (GO:0051971)
Namespace: biological_process
Definition: Any process that activates, maintains or increases the frequency, rate or extent of transmission of a nerve impulse, the sequential electrochemical polarization and depolarization that travels across the membrane of a neuron in response to stimulation.
Synonyms: activation of transmission of nerve impulse; positive regulation of conduction of nerve impulse; stimulation of transmission of nerve impulse; up regulation of transmission of nerve impulse; up-regulation of transmission of nerve impulse; upregulation of transmission of nerve impulse
obsolete positive regulation of telomerase activity (GO:0051973)
Namespace: biological_process
Definition: OBSOLETE. Any process that activates or increases the frequency, rate or extent of telomerase activity, the catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1).
Synonyms: activation of telomerase activity; stimulation of telomerase activity; telomerase activator; up regulation of telomerase activity; up-regulation of telomerase activity; upregulation of telomerase activity
Comment: The reason for obsoletion is that this term represents a molecular function.
lysophospholipid transport (GO:0051977)
Namespace: biological_process
Definition: The directed movement of phospholipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A lysophospholipid is a phospholipid that lacks one of its fatty acyl chains; it is an intermediate formed during digestion of dietary and biliary phospholipids.
iron-nicotianamine transmembrane transporter activity (GO:0051980)
Namespace: molecular_function
Definition: Enables the transfer of the iron chelate iron-nicotianamine (Fe-NA) from one side of a membrane to the other.
Synonyms: Fe-NA chelate transporter activity
copper-nicotianamine transmembrane transporter activity (GO:0051982)
Namespace: molecular_function
Definition: Enables the transfer of the copper chelate copper-nicotianamine (Cu-NA) from one side of a membrane to the other.
Synonyms: Cu-NA chelate transporter activity
positive regulation of attachment of spindle microtubules to kinetochore (GO:0051987)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of the attachment of spindle microtubules to the kinetochore.
Synonyms: activation of attachment of spindle microtubules to kinetochore; stimulation of attachment of spindle microtubules to kinetochore; up regulation of attachment of spindle microtubules to kinetochore; up-regulation of attachment of spindle microtubules to kinetochore; upregulation of attachment of spindle microtubules to kinetochore
regulation of attachment of spindle microtubules to kinetochore (GO:0051988)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of the attachment of spindle microtubules to the kinetochore.
Synonyms: regulation of kinetochore-microtubule attachment
UDP-N-acetyl-D-glucosamine:N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenol 4-beta-N-acetylglucosaminlytransferase activity (GO:0051991)
Namespace: molecular_function
Definition: Catalysis of the reaction: di-trans-octa-cis-undecaprenyl diphospho-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine + UDP-N-acetyl-alpha-D-glucosamine = di-trans-octa-cis-undecaprenyl diphospho-[N-acetyl-alpha-D-glucosaminyl-(1->4)]-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine + H+ + UDP.
obsolete catabolism by symbiont of host cell wall pectin (GO:0052011)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways performed by an organism resulting in the breakdown of pectin in the host cell wall. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Synonyms: catabolism by organism of host cell wall pectin
Comment: This term was obsoleted because it represents a molecular function.
obsolete catabolism by symbiont of host carbohydrate (GO:0052015)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways performed by an organism resulting in the breakdown of carbohydrate molecules within the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Synonyms: catabolism by organism of host carbohydrate
Comment: This term was obsoleted because it represents a molecular function.
symbiont-mediated suppression of host signal transduction pathway (GO:0052029)
Namespace: biological_process
Definition: A process in which a symbiont interferes with, inhibits or disrupts a host signal transduction pathway. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Synonyms: disruption by symbiont of host signal transduction pathway; disruption of host signal transduction pathway; down regulation by symbiont of host signal transduction pathway; down-regulation by symbiont of host signal transduction pathway; downregulation by symbiont of host signal transduction pathway; inhibition by symbiont of host signal transduction pathway; negative modulation by organism of host signal transduction pathway; negative regulation by organism of signal transduction in other organism involved in symbiotic interaction; negative regulation by symbiont of host signal transduction pathway; suppression by symbiont of host signal transduction pathway
symbiont-mediated suppression of host programmed cell death (GO:0052041)
Namespace: biological_process
Definition: A process in which a symbiont inhibits or disrupts the normal execution of host programmed cell death, leading to a decrease in the frequency, rate or extent of programmed cell death in the host cell. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Synonyms: down regulation by symbiont of host programmed cell death; down-regulation by symbiont of host programmed cell death; downregulation by symbiont of host programmed cell death; inhibition by symbiont of host programmed cell death; inhibition of host programmed cell death; negative regulation by symbiont of host programmed cell death; suppression by symbiont of host PCD; suppression by symbiont of host programmed cell death
obsolete interaction with host via protein secreted by type III secretion system (GO:0052049)
Namespace: biological_process
Definition: OBSOLETE. An interaction with the host organism mediated by a substance secreted by the symbiont organism by a type III secretion system. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Comment: This term was obsoleted because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target.
obsolete modification by symbiont of host morphology or physiology via protein secreted by type II secretion system (GO:0052052)
Namespace: biological_process
Definition: OBSOLETE. The process in which an organism effects a change in the structure or function of its host organism, mediated by a substance secreted by a type II secretion system in the organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Comment: This term was obsoleted because it conflated the process in which a gene product is involved with the secretion system by which it reaches its target.
obsolete energy taxis in host environment (GO:0052115)
Namespace: biological_process
Definition: OBSOLETE. The directed movement of a motile cell or organism in the environment of its host organism in response to physical parameters involved in energy generation, such as light, oxygen, and oxidizable substrates. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Synonyms: energy taxis in response to host environment
Comment: This term was obsoleted because it represents both a process and a location.
obsolete chemotaxis in host environment (GO:0052116)
Namespace: biological_process
Definition: OBSOLETE. The directed movement of a motile cell or organism in response to a specific chemical concentration gradient on, within or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Synonyms: chemotaxis in response to host environment
Comment: This term was obsoleted because it represents both a process and a location.
obsolete energy taxis within host (GO:0052124)
Namespace: biological_process
Definition: OBSOLETE. The directed movement of a motile cell or organism within its host organism in response to physical parameters involved in energy generation, such as light, oxygen, and oxidizable substrates. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Comment: This term was obsoleted because it represents both a process and a location.
obsolete movement on or near host (GO:0052127)
Namespace: biological_process
Definition: OBSOLETE. The directed movement of an organism or motile cell on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Comment: This term was obsoleted because it represented both a process and a location.
obsolete negative chemotaxis on or near host (GO:0052136)
Namespace: biological_process
Definition: OBSOLETE. The directed movement of a motile cell or organism towards a lower concentration of a specific chemical on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Comment: This term was obsoleted because it represents both a process and a location.
obsolete chemotaxis within host (GO:0052142)
Namespace: biological_process
Definition: OBSOLETE. The directed movement of a motile cell or organism in response to a specific chemical concentration gradient within its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Comment: This term was obsoleted because it represents both a process and a location.
obsolete modulation by symbiont of microbe-associated molecular pattern-induced host innate immune response (GO:0052157)
Namespace: biological_process
Definition: OBSOLETE. Any process that involves recognition of a microbe-associated molecular pattern, and by which a symbiont modulates the frequency, rate or extent of the innate immune response of the host organism; the innate immune response is the host's first line of defense against infection. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Synonyms: modulation by organism of microbe-associated molecular pattern-induced innate immune response in other organism involved in symbiotic interaction; modulation by symbiont of microbe-associated molecular pattern-induced host innate immunity; modulation by symbiont of pathogen-associated molecular pattern-induced host innate immunity
Comment: The reason for obsoletion is that this term has been misused.
obsolete symbiont-mediated perturbation of defense-related host calcium ion flux (GO:0052162)
Namespace: biological_process
Definition: OBSOLETE. Any process in which an organism modulates the frequency, rate or extent of calcium ion fluxes as part of the defense response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Synonyms: modulation by organism of defense-related calcium ion flux in other organism involved in symbiotic interaction; modulation by organism of defense-related host Ca2+ flux; modulation by symbiont of defense-related host calcium ion flux
Comment: This term was obsoleted because it represents the same process as symbiont-mediated suppression of host calcium or calmodulin-mediated signal transduction ; GO:0075135.
obsolete pathogen-associated molecular pattern dependent modulation by symbiont of host innate immune response (GO:0052169)
Namespace: biological_process
Definition: OBSOLETE. Any process that involves recognition of a pathogen-associated molecular pattern, and by which an organism modulates the frequency, rate or extent of the innate immune response of the host organism; the innate immune response is the host's first line of defense against infection. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Synonyms: pathogen-associated molecular pattern dependent modulation by symbiont of host innate immunity
Comment: This term was obsoleted because it has been misused.
obsolete metabolism by symbiont of host cell wall cellulose (GO:0052172)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways performed by an organism involving cellulose in the cell wall of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Comment: This term was obsoleted because it represents a molecular function.
obsolete interaction with symbiont via secreted substance (GO:0052213)
Namespace: biological_process
Definition: OBSOLETE. An interaction with a symbiont organism mediated by a substance secreted by a host organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.
Synonyms: interaction with symbiont via secreted substance during symbiotic interaction; interaction with symbiont via secreted substance involved in symbiotic interaction
Comment: The reason for obsoletion is that this process was not clearly defined, and probably represented some immune response. .
obsolete positive aerotaxis in other organism involved in symbiotic interaction (GO:0052233)
Namespace: biological_process
Definition: OBSOLETE. The directed movement of a motile cell or organism towards a higher concentration of environmental oxygen within a second organism, where the two organisms are in a symbiotic interaction.
Synonyms: positive aerotaxis in other organism during symbiotic interaction; positive aerotaxis within other organism during symbiotic interaction
Comment: This term was obsoleted because it represents both a process and a location.
obsolete negative chemotaxis in other organism involved in symbiotic interaction (GO:0052239)
Namespace: biological_process
Definition: OBSOLETE. The directed movement of a motile cell or organism towards a lower concentration of a specific chemical within a second organism, where the two organisms are in a symbiotic interaction.
Synonyms: negative chemotaxis in other organism during symbiotic interaction; negative chemotaxis within other organism during symbiotic interaction
Comment: This term was obsoleted because it represents both a process and a location.
obsolete positive energy taxis on or near other organism involved in symbiotic interaction (GO:0052246)
Namespace: biological_process
Definition: OBSOLETE. The directed movement of a motile cell or organism on or near a second organism towards a higher level of a physical stimulus involved in energy generation, such as light, oxygen, and oxidizable substrates, where the two organisms are in a symbiotic interaction.
Synonyms: positive energy taxis on or near other organism during symbiotic interaction
Comment: This term was obsoleted because it represents both a process and a location.
positive regulation of phytoalexin biosynthetic process (GO:0052322)
Namespace: biological_process
Definition: Any process that activates, maintains or increases the frequency, rate or extent of phytoalexin biosynthesis, the chemical reactions and pathways resulting in the formation of phytoalexins.
Synonyms: activation of phytoalexin biosynthesis; positive regulation of phytoalexin biosynthesis; stimulation of phytoalexin biosynthesis; up regulation of phytoalexin biosynthesis; up-regulation of phytoalexin biosynthesis; upregulation of phytoalexin biosynthesis