LiteFold/GO huggingface dataset:
obsolete cellular trivalent inorganic cation homeostasis (GO:0072504)
Namespace: biological_process
Definition: OBSOLETE. Any process involved in the maintenance of an internal steady state of trivalent cations at the level of a cell.
Comment: This term was obsoleted because it is an unnecessary grouping class.
Rho-dependent protein serine/threonine kinase activity (GO:0072518)
Namespace: molecular_function
Definition: Rho GTPase-dependent catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein.
Synonyms: Rho-associated protein kinase activity; ROCK kinase activity
Comment: This reaction requires binding of the GTPase Rho.
purine-containing compound catabolic process (GO:0072523)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of a purine-containing compound, i.e. any compound that contains purine or a formal derivative thereof.
Synonyms: purine and derivative catabolic process; purine-containing compound breakdown; purine-containing compound catabolism; purine-containing compound degradation
pyrimidine-containing compound metabolic process (GO:0072527)
Namespace: biological_process
Definition: The chemical reactions and pathways involving a pyrimidine-containing compound, i.e. any compound that contains pyrimidine or a formal derivative thereof.
Synonyms: pyrimidine and derivative metabolic process; pyrimidine-containing compound metabolism
T-helper 17 type immune response (GO:0072538)
Namespace: biological_process
Definition: An immune response which is associated with resistance to intracellular bacteria with a key role in inflammation and tissue injury. This immune response is associated with pathological autoimmune conditions such as multiple sclerosis, arthritis and psoriasis which is typically orchestrated by the production of particular cytokines by T-helper 17 cells, most notably interleukin-17, IL-21 and IL-22.
Synonyms: Th17 immune response
protein phosphatase activator activity (GO:0072542)
Namespace: molecular_function
Definition: Binds to and increases the activity of a protein phosphatase.
Synonyms: protein phosphatase 2 activator activity; protein phosphatase type 1 activator activity; protein phosphatase type 2A activator activity
triferuloylspermidine meta-hydroxylase activity (GO:0072550)
Namespace: molecular_function
Definition: Catalysis of the reaction: triferuloyl spermidine + NADPH + O2 = diferuloyl mono-(hydroxyferuloyl) spermidine + NADP+ + H2O.
Synonyms: triferuloyl spermidine meta-hydroxylase activity
blood vessel lumenization (GO:0072554)
Namespace: biological_process
Definition: The process in which a developing blood vessel forms an endothelial lumen through which blood will flow.
poly-ADP-D-ribose binding (GO:0072572)
Namespace: molecular_function
Definition: Binding to polymeric ADP-D-ribose, a polymer that is composed of poly-ADP-D-ribose units linked through 1,2-glycosidic bonds at the ribose ring.
Synonyms: pADPr binding; poly-ADP-ribose binding
glycine receptor clustering (GO:0072579)
Namespace: biological_process
Definition: The receptor clustering process in which glycine receptors are localized to distinct domains in the cell membrane.
caveolin-mediated endocytosis (GO:0072584)
Namespace: biological_process
Definition: An endocytosis process that begins when material is taken up into plasma membrane caveolae, which then pinch off to form endocytic caveolar carriers.
Synonyms: caveolae-dependent endocytosis; caveolae-mediated endocytosis; caveolin-dependent endocytosis
box H/ACA scaRNP complex (GO:0072589)
Namespace: cellular_component
Definition: A box H/ACA RNP complex that is located in the Cajal body of the nucleoplasm. In higher eukaryotes, box H/ACA RNP located in Cajal bodies mediate pseudouridylation of spliceosomal snRNAs.
Synonyms: nucleoplasmic box H/ACA RNP pseudouridylase complex
establishment of protein localization to chloroplast (GO:0072596)
Namespace: biological_process
Definition: The directed movement of a protein to a specific location in a chloroplast.
Synonyms: establishment of protein localisation to chloroplast
maintenance of protein location in chloroplast (GO:0072597)
Namespace: biological_process
Definition: Any process in which a protein is maintained in a specific location in a chloroplast, and is prevented from moving elsewhere.
interferon-epsilon production (GO:0072647)
Namespace: biological_process
Definition: The appearance of interferon-epsilon due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.
Synonyms: IFN-epsilon production; IFNE production; interferon-epsilon secretion
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms.
lymphocyte migration (GO:0072676)
Namespace: biological_process
Definition: The movement of a lymphocyte within or between different tissues and organs of the body.
MCM complex assembly (GO:0072689)
Namespace: biological_process
Definition: The aggregation, arrangement and bonding together of a set of components to form an MCM complex, a hexameric protein complex required for the initiation and regulation of DNA replication.
single-celled organism vegetative growth phase (GO:0072690)
Namespace: biological_process
Definition: A phase of population growth during which single celled organisms reproduce by budding, fission, or other asexual methods.
Synonyms: stationary phase; vegetative growth of a single-celled organism
Comment: Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct annotation is 'regulation of x/y phase transition' or to a process which occurs during the reported phase. To capture the phase when a specific location or process is observed, the phase term can be used in an annotation extension (PMID:24885854) applied to a cellular component term (with the relation exists_during) or a biological process term (with the relation happens_during).
protein localization to cortical microtubule cytoskeleton (GO:0072699)
Namespace: biological_process
Definition: A process in which a protein is transported to, or maintained at, a location within the cortical microtubule cytoskeleton.
Synonyms: protein localisation to cortical microtubule cytoskeleton
response to mercaptoethanol (GO:0072704)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mercaptoethanol stimulus.
Synonyms: response to 2-sulfanylethanol
response to 4-nitroquinoline N-oxide (GO:0072724)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a 4-nitroquinoline N-oxide stimulus.
cellular response to 4-nitroquinoline N-oxide (GO:0072725)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a 4-nitroquinoline N-oxide stimulus.
cellular response to erythromycin (GO:0072743)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an erythromycin stimulus.
cellular response to chloramphenicol (GO:0072747)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chloramphenicol stimulus.
obsolete growth or development of symbiont on or near host phyllosphere (GO:0075013)
Namespace: biological_process
Definition: OBSOLETE. The increase in size or mass of symbiont, or the progression of the symbiont from an initial condition to a later condition, occurring on or near its host phyllosphere. The host phyllosphere is defined as total above-ground surfaces of a plant as a habitat for symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Synonyms: growth or development of symbiont on or near host phyllosphere
obsolete regulation of appressorium initiation (GO:0075026)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of symbiont appressorium initiation.
Synonyms: regulation of appressorium initiation on or near host; regulation of initiation of appressorium on or near host
Comment: This term was obsoleted because it represents a phenotype.
obsolete negative regulation of formation by symbiont of haustorium for nutrient acquisition from host (GO:0075047)
Namespace: biological_process
Definition: OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of symbiont haustorium formation for nutrient acquisition from host. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Comment: This term was obsoleted because it is not clear whether it represents a host or a symbiont process.
obsolete negative regulation by host of symbiont receptor-mediated signal transduction (GO:0075080)
Namespace: biological_process
Definition: OBSOLETE. Any process in which the host organism stops, prevents, or reduces the frequency, rate or extent of receptor-mediated signal transduction in the symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Comment: The reason for obsoletion is that there is no evidence that the host can modulate or regulate a symbiont's signal transduction pathway.
obsolete modulation by symbiont of host adenylate cyclase activity (GO:0075106)
Namespace: biological_process
Definition: OBSOLETE. Any process in which the symbiont modulates the frequency, rate or extent of the host adenylate cyclase activity, which involves catalysis of the reaction: ATP = 3',5'-cyclic AMP + diphosphate. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Synonyms: Modulation by symbiont of host 3',5'-cyclic AMP synthetase activity; Modulation by symbiont of host adenyl cyclase activity; Modulation by symbiont of host adenylyl cyclase activity; Modulation by symbiont of host adenylylcyclase activity; Modulation by symbiont of host ATP diphosphate-lyase (cyclizing ; 3',5'-cyclic-AMP-forming) activity; Modulation by symbiont of host ATP diphosphate-lyase (cyclizing) activity; Modulation by symbiont of host ATP pyrophosphate-lyase activity; Modulation by symbiont of host cAMP generating peptide activity
Comment: This term was obsoleted because it represents a molecular function.
symbiont-mediated perturbation of host receptor-mediated signal transduction (GO:0075109)
Namespace: biological_process
Definition: A process by which a symbiont alters or subverts a receptor-mediated signal transduction pathway in its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Synonyms: perturbation of host receptor-mediated signal transduction
obsolete regulation of receptor-mediated signal transduction in response to host (GO:0075150)
Namespace: biological_process
Definition: OBSOLETE. Any process in which the symbiont organism modulates the frequency, rate or extent of its receptor-mediated signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Synonyms: regulation of symbiont receptor-mediated signal transduction in response to host
Comment: This term was obsoleted because there is no evidence that this process exists.
obsolete negative regulation of protein kinase-mediated signal transduction in response to host (GO:0075170)
Namespace: biological_process
Definition: OBSOLETE. Any process in which the symbiont organism stops, prevents, or reduces the frequency, rate or extent of its symbiont protein kinase-mediated signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Synonyms: negative regulation of symbiont protein kinase-mediated signal transduction in response to host
Comment: This term was obsoleted because there is no evidence that this process exists.
obsolete negative regulation of MAP kinase-mediated signal transduction in response to host (GO:0075173)
Namespace: biological_process
Definition: OBSOLETE. Any process in which the symbiont organism stops, prevents, or reduces the frequency, rate or extent of its symbiont MAP kinase-mediated signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Synonyms: negative regulation of symbiont MAP kinase-mediated signal transduction in response to host
Comment: This term was obsoleted because there is no evidence that this process exists.
obsolete negative regulation of cAMP-mediated signaling in response to host (GO:0075176)
Namespace: biological_process
Definition: OBSOLETE. Any process in which the symbiont organism stops, prevents, or reduces the frequency, rate or extent of its cAMP-mediated signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Synonyms: negative regulation of cAMP-mediated signal transduction in response to host; negative regulation of cAMP-mediated signalling in response to host; negative regulation of symbiont cAMP-mediated signal transduction in response to host
Comment: This term was obsoleted because there is no evidence that this process exists.
obsolete negative regulation of symbiont transcription in response to host (GO:0075182)
Namespace: biological_process
Definition: OBSOLETE. Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of its transcription as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Comment: This term was obsoleted because it represents a GO-CAM model.
symbiont-mediated suppression of host cAMP/PKA signal transduction (GO:0075210)
Namespace: biological_process
Definition: A process in which a symbiont interferes with, inhibits or disrupts a cAMP/PKA signal transduction in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Synonyms: disruption of host cAMP-mediated signal transduction; negative regulation by symbiont of host cAMP-mediated signal transduction; negative regulation by symbiont of host cAMP-mediated signaling; suppression by symbiont of host cAMP-mediated signal transduction; symbiont-mediated suppression of host cAMP signal transduction; symbiont-mediated suppression of host PKA signal transduction
Comment: Note that this term is used to annotate gene products of the symbiont. To annotate host gene products, consider the biological process term "Negative regulation by host of symbiont cAMP-mediated signal transduction ; GO:0075207".
sporangium germination (GO:0075222)
Namespace: biological_process
Definition: The physiological, developmental and morphological changes that occur in a symbiont sporangium following release from dormancy up to the earliest signs of growth. A sporangium is a structure producing and containing spores.
Synonyms: direct germination on or near host; germination of symbiont sporangium on or near host; sporangium germination on or near host; symbiont sporangium germination on or near host
obsolete modulation of spore movement on or near host (GO:0075231)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of spore movement on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Comment: This term was obsoleted because it represented both a process and a location.
positive regulation of zoospore formation (GO:0075241)
Namespace: biological_process
Definition: Any process that activates, maintains or increases the frequency, rate or extent of zoospore formation, a process in which a diploid cell undergoes meiosis, and the meiotic products acquire specialized features of asexual motile mononucleate flagellated spores called zoospores.
positive regulation of oospore formation (GO:0075245)
Namespace: biological_process
Definition: Any process that activates, maintains or increases the frequency, rate or extent of oospore formation, a process in which male and female gametangia develop and fuse to form a thick-walled resting spore of oomycetes.
aecium development (GO:0075267)
Namespace: biological_process
Definition: The process in which a cup-like structure containing chains of aeciospores is formed. This is characteristic of the rust fungus and typically, the first dikaryotic spores (aeciospores) are produced in the aecium.
regulation of aecium development (GO:0075268)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of aecium development, a process in which a cuplike structure containing chains of aeciospores is formed.
negative regulation of aecium development (GO:0075270)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of aecium development, a process in which a cuplike structure containing chains of aeciospores is formed.
asexual sporulation resulting in formation of a multicellular or syncytial spore (GO:0075284)
Namespace: biological_process
Definition: The formation of a multicellular or syncytial spore via septations derived from mitosis.
positive regulation by symbiont of entry into host (GO:0075294)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent to which it enters into the host organism, where the two organisms are in a symbiotic interaction.
Synonyms: activation by organism of entry into other organism during symbiotic interaction; activation by symbiont of entry into host; positive regulation by organism of entry into other organism during symbiotic interaction; positive regulation by organism of entry into other organism involved in symbiotic interaction; up regulation by organism of entry into other organism during symbiotic interaction; up regulation by symbiont of entry into host; up-regulation by organism of entry into other organism during symbiotic interaction; up-regulation by symbiont of entry into host; upregulation by organism of entry into other organism during symbiotic interaction; upregulation by symbiont of entry into host
positive regulation of basidiospore formation (GO:0075303)
Namespace: biological_process
Definition: Any process that activates, maintains or increases the frequency, rate or extent of frequency, rate or extent of basidiospore formation, a process in which a sexually produced fungal spore is formed on a basidium in the fungi basidiomycetes.
regulation of ascus development (GO:0075318)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of ascus development, a process that leads to the formation of basidium, a sac-like structure produced by fungi of the phylum Ascomycota (sac fungi) in which sexually produced spores (ascospores), usually four or eight in number, are formed.
negative regulation of ascus development (GO:0075320)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of ascus development, a saclike structure produced by fungi of the phylum Ascomycota (sac fungi) in which sexually produced spores (ascospores), usually four or eight in number, are formed.
obsolete negative regulation of arbuscule formation for nutrient acquisition from host (GO:0075331)
Namespace: biological_process
Definition: OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of symbiont arbuscule formation for nutrient acquisition from host. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Comment: This term was obsoleted because it is not clear whether it represents a host or a symbiont process.
obsolete modulation by symbiont of abscisic acid levels in host (GO:0075343)
Namespace: biological_process
Definition: OBSOLETE. The alteration by an organism of the levels of abscisic acid in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Comment: This term was obsoleted because there is no evidence that this process exists.
thalian-diol desaturase activity (GO:0080004)
Namespace: molecular_function
Definition: Catalysis of the reaction: a thalian-diol = a desaturated thalian-diol. This reaction is the introduction of a double bond to a thalian-diol molecule at carbon 15.
baruol synthase activity (GO:0080011)
Namespace: molecular_function
Definition: Catalysis of the reaction: (S)-2,3-epoxysqualene = baruol. Baruol is also known as D:B-Friedo-Baccharan-5,21-dien-3-ol.
(-)-E-beta-caryophyllene synthase activity (GO:0080016)
Namespace: molecular_function
Definition: Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate = (-)-E-beta-caryophyllene + diphosphate.
2-hydroxy-but-3-enyl glucosinolate biosynthetic process (GO:0080035)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of progoitrin, a 2-hydroxy-but-3-enyl glucosinolate. Glucosinolates are substituted thioglucosides found in rapeseed products and related cruciferae, and progoitrin has been implicated in causing goiters in mammals and bitter taste in cruciferous vegetables.
Synonyms: 2-hydroxy-but-3-enyl glucosinolate anabolism; 2-hydroxy-but-3-enyl glucosinolate biosynthesis; 2-hydroxy-but-3-enyl glucosinolate formation; 2-hydroxy-but-3-enyl glucosinolate synthesis; progoitrin biosynthesis; progoitrin biosynthetic process; progoitrin synthesis
ADP-ribose pyrophosphatase activity (GO:0080041)
Namespace: molecular_function
Definition: Catalysis of the reaction: ADP-ribose + H2O = AMP + ribose-1-phosphate.
Synonyms: ADP-ribose pyrophosphohydrolase activity
low-affinity nitrate transmembrane transporter activity (GO:0080054)
Namespace: molecular_function
Definition: Enables the transfer of nitrate ions (NO3-) from one side of a membrane to the other. In low-affinity transport the transporter is able to bind the solute only if it is present at very high concentrations.
Synonyms: low affinity nitrate transmembrane transporter activity
sepal vascular tissue pattern formation (GO:0080057)
Namespace: biological_process
Definition: Vascular tissue pattern formation as it occurs in the sepal of vascular plants.
cytokinin 9-beta-glucosyltransferase activity (GO:0080062)
Namespace: molecular_function
Definition: Catalysis of the reaction: 6-alkylaminopurine + UDP-D-glucose = 6-alkylamino-9-beta-D-glucosylpurine + H+ + UDP. This reaction is an N-glucosylation event.
esculin beta-glucosidase activity (GO:0080082)
Namespace: molecular_function
Definition: Catalysis of the hydrolysis of glucosidic link in esculin.
phosphatidate-sterol O-acyltransferase activity (GO:0080096)
Namespace: molecular_function
Definition: Catalysis of the reaction: a phosphatidate + a sterol = a sterol ester + a lysophosphatidate.
L-methionine:2-oxoglutarate transaminase activity (GO:0080099)
Namespace: molecular_function
Definition: Catalysis of the reaction: L-methionine + 2-oxoglutarate = 4-methylsulfanyl-2-oxobutanoate + L-glutamate.
Synonyms: L-methionine:2-oxoglutarate aminotransferase activity; L-methionine:alpha-ketoglutarate aminotransferase activity
obsolete DNA demethylation (GO:0080111)
Namespace: biological_process
Definition: OBSOLETE. The removal of a methyl group from one or more nucleotides within an DNA molecule.
Comment: This term was obsoleted because it represents a molecular function.