LiteFold/GO huggingface dataset:
negative regulation of syringal lignin biosynthetic process (GO:1901429)
Namespace: biological_process
Definition: Any process that stops, prevents or reduces the frequency, rate or extent of syringal lignin biosynthetic process.
Synonyms: down regulation of S-lignin biosynthetic process; down regulation of syringal lignin anabolism; down regulation of syringal lignin biosynthesis; down regulation of syringal lignin biosynthetic process; down regulation of syringal lignin formation; down regulation of syringal lignin synthesis; down-regulation of S-lignin biosynthetic process; down-regulation of syringal lignin anabolism; down-regulation of syringal lignin biosynthesis; down-regulation of syringal lignin biosynthetic process; down-regulation of syringal lignin formation; down-regulation of syringal lignin synthesis; downregulation of S-lignin biosynthetic process; downregulation of syringal lignin anabolism; downregulation of syringal lignin biosynthesis; downregulation of syringal lignin biosynthetic process; downregulation of syringal lignin formation; downregulation of syringal lignin synthesis; inhibition of S-lignin biosynthetic process; inhibition of syringal lignin anabolism; inhibition of syringal lignin biosynthesis; inhibition of syringal lignin biosynthetic process; inhibition of syringal lignin formation; inhibition of syringal lignin synthesis; negative regulation of S-lignin biosynthetic process; negative regulation of syringal lignin anabolism; negative regulation of syringal lignin biosynthesis; negative regulation of syringal lignin formation; negative regulation of syringal lignin synthesis
azole transmembrane transporter activity (GO:1901474)
Namespace: molecular_function
Definition: Enables the directed movement of azoles, heterocyclic compound found in many biologically important substances, from one side of a membrane to the other.
Synonyms: azole transporter activity
obsolete negative regulation of SREBP signaling pathway by positive regulation of transcription factor catabolic process (GO:1901486)
Namespace: biological_process
Definition: OBSOLETE. Positive regulation of transcription factor catabolism that results in negative regulation of the SREBP signaling pathway.
Synonyms: negative regulation of SREBP signaling pathway by positive regulation of SREBP degradation; negative regulation of SREBP signaling pathway by positive regulation of transcription factor catabolism; negative regulation of SREBP-mediated signaling pathway by positive regulation of transcription factor catabolic process; negative regulation of SREBP-mediated signalling pathway by positive regulation of transcription factor catabolic process
Comment: The reason for obsoletion is that this term should be represented by a GO-CAM model.
obsolete regulation of cysteine metabolic process (GO:1901494)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of cysteine metabolic process.
Synonyms: regulation of cysteine metabolism
Comment: This term was obsoleted because it was an unnecessray grouping term.
ether biosynthetic process (GO:1901503)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of ether.
Synonyms: ether anabolism; ether biosynthesis; ether formation; ether synthesis
triazole transport (GO:1901504)
Namespace: biological_process
Definition: The directed movement of a triazole into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
positive regulation of mitophagy (GO:1901526)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of mitophagy.
Synonyms: activation of macromitophagy; positive regulation of macromitophagy; up regulation of macromitophagy; up-regulation of macromitophagy; upregulation of macromitophagy
obsolete regulation of DNA demethylation (GO:1901535)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of DNA demethylation.
Comment: This term was obsoleted because it represents a molecular function.
obsolete negative regulation of DNA demethylation (GO:1901536)
Namespace: biological_process
Definition: OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of DNA demethylation.
Synonyms: down regulation of DNA demethylation; down-regulation of DNA demethylation; downregulation of DNA demethylation; inhibition of DNA demethylation
Comment: This term was obsoleted because it represents a molecular function.
obsolete response to paclitaxel (GO:1901555)
Namespace: biological_process
Definition: OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a paclitaxel stimulus.
Comment: This term was obsoleted because it represents a response to xenobiotic stimulus, and GO terms are not created for every xenobiotic.
response to paraquat (GO:1901562)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a paraquat stimulus.
fatty acid derivative metabolic process (GO:1901568)
Namespace: biological_process
Definition: The chemical reactions and pathways involving fatty acid derivative.
Synonyms: fatty acid derivative metabolism
fatty acid derivative biosynthetic process (GO:1901570)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of fatty acid derivative.
Synonyms: fatty acid derivative anabolism; fatty acid derivative biosynthesis; fatty acid derivative formation; fatty acid derivative synthesis
obsolete chemical substance biosynthetic process (GO:1901574)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways resulting in the formation of chemical substance.
Synonyms: chemical substance anabolism; chemical substance biosynthesis; chemical substance biosynthetic process; chemical substance formation; chemical substance synthesis
Comment: This term was obsoleted at the TermGenie Gatekeeper stage.
positive regulation of alkane biosynthetic process (GO:1901579)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of alkane biosynthetic process.
Synonyms: activation of alkane anabolism; activation of alkane biosynthesis; activation of alkane biosynthetic process; activation of alkane formation; activation of alkane synthesis; positive regulation of alkane anabolism; positive regulation of alkane biosynthesis; positive regulation of alkane formation; positive regulation of alkane synthesis; up regulation of alkane anabolism; up regulation of alkane biosynthesis; up regulation of alkane biosynthetic process; up regulation of alkane formation; up regulation of alkane synthesis; up-regulation of alkane anabolism; up-regulation of alkane biosynthesis; up-regulation of alkane biosynthetic process; up-regulation of alkane formation; up-regulation of alkane synthesis; upregulation of alkane anabolism; upregulation of alkane biosynthesis; upregulation of alkane biosynthetic process; upregulation of alkane formation; upregulation of alkane synthesis
obsolete regulation of telomeric RNA transcription from RNA pol II promoter (GO:1901580)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of telomeric RNA transcription from RNA pol II promoter.
Synonyms: regulation of telomeric RNA transcription from Pol II promoter
Comment: This term was obsoleted because there is no evidence that telomeric RNA is specifically transcribed, but it may be a result of cryptic transcription. Biological processes exist to maintain telomeric DNA is a repressed state (subtelomeric heterochromatin formation ; GO:0031509).
obsolete negative regulation of telomeric RNA transcription from RNA pol II promoter (GO:1901581)
Namespace: biological_process
Definition: OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of telomeric RNA transcription from RNA pol II promoter.
Synonyms: down regulation of telomeric RNA transcription from Pol II promoter; down regulation of telomeric RNA transcription from RNA pol II promoter; down-regulation of telomeric RNA transcription from Pol II promoter; down-regulation of telomeric RNA transcription from RNA pol II promoter; downregulation of telomeric RNA transcription from Pol II promoter; downregulation of telomeric RNA transcription from RNA pol II promoter; inhibition of telomeric RNA transcription from Pol II promoter; inhibition of telomeric RNA transcription from RNA pol II promoter; negative regulation of telomeric RNA transcription from Pol II promoter
Comment: This term was obsoleted because there is no evidence that telomeric RNA is specifically transcribed, but it may be a result of cryptic transcription. Biological processes exist to maintain telomeric DNA is a repressed state (subtelomeric heterochromatin formation ; GO:0031509).
dethiobiotin binding (GO:1901602)
Namespace: molecular_function
Definition: Binding to dethiobiotin.
obsolete organic hydroxy compound transmembrane transporter activity (GO:1901618)
Namespace: molecular_function
Definition: OBSOLETE. Enables the transfer of organic hydroxy compound from one side of a membrane to the other.
Comment: This term was obsoleted because it is an unnecessary grouping class.
response to peptide (GO:1901652)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide stimulus.
regulation of mitotic spindle assembly (GO:1901673)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of mitotic spindle assembly.
Synonyms: regulation of spindle assembly involved in mitosis
glutathione derivative catabolic process (GO:1901686)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of glutathione derivative.
Synonyms: glutathione derivative breakdown; glutathione derivative catabolism; glutathione derivative degradation
negative regulation of compound eye retinal cell apoptotic process (GO:1901693)
Namespace: biological_process
Definition: Any process that stops, prevents or reduces the frequency, rate or extent of compound eye retinal cell apoptotic process.
Synonyms: down regulation of compound eye retinal cell apoptotic process; down-regulation of compound eye retinal cell apoptotic process; downregulation of compound eye retinal cell apoptotic process; inhibition of compound eye retinal cell apoptotic process
response to oxygen-containing compound (GO:1901700)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an oxygen-containing compound stimulus.
Synonyms: response to oxygen molecular entity
Comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
regulation of GABA catabolic process (GO:1901715)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of gamma-aminobutyric acid catabolic process.
Synonyms: regulation of 4-aminobutanoate catabolic process; regulation of 4-aminobutanoate catabolism; regulation of 4-aminobutyrate catabolic process; regulation of 4-aminobutyrate catabolism; regulation of GABA catabolism; regulation of gamma-aminobutyric acid breakdown; regulation of gamma-aminobutyric acid catabolic process; regulation of gamma-aminobutyric acid catabolism; regulation of gamma-aminobutyric acid degradation
obsolete positive regulation of histone deacetylase activity (GO:1901727)
Namespace: biological_process
Definition: OBSOLETE. Any process that activates or increases the frequency, rate or extent of histone deacetylase activity.
Synonyms: activation of histone deacetylase activity; up regulation of histone deacetylase activity; up-regulation of histone deacetylase activity; upregulation of histone deacetylase activity
Comment: This term was obsoleted because it represents a molecular function.
positive regulation of myoblast fusion (GO:1901741)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of myoblast fusion.
Synonyms: activation of myoblast fusion; up regulation of myoblast fusion; up-regulation of myoblast fusion; upregulation of myoblast fusion
obsolete butirosin metabolic process (GO:1901756)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving butirosin.
Synonyms: butirosin metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
obsolete beta-L-Ara4N-lipid A metabolic process (GO:1901759)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving beta-L-Ara4N-lipid A.
Synonyms: 4-amino-4-deoxy-beta-L-arabinose-lipid A metabolic process; 4-amino-4-deoxy-beta-L-arabinose-lipid A metabolism; beta-L-Ara4N-lipid A metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
phosphinothricin catabolic process (GO:1901765)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of phosphinothricin.
Synonyms: phosphinothricin breakdown; phosphinothricin catabolism; phosphinothricin degradation
obsolete pentalenolactone metabolic process (GO:1901778)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving pentalenolactone.
Synonyms: pentalenolactone metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
negative regulation of signal transduction by p53 class mediator (GO:1901797)
Namespace: biological_process
Definition: Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction by p53 class mediator.
Synonyms: down regulation of signal transduction by p53 class mediator; down-regulation of signal transduction by p53 class mediator; downregulation of signal transduction by p53 class mediator; inhibition of signal transduction by p53 class mediator
capsanthin catabolic process (GO:1901808)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of capsanthin.
Synonyms: capsanthin breakdown; capsanthin catabolism; capsanthin degradation
capsanthin biosynthetic process (GO:1901809)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of capsanthin.
Synonyms: capsanthin anabolism; capsanthin biosynthesis; capsanthin formation; capsanthin synthesis
astaxanthin catabolic process (GO:1901814)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of astaxanthin.
Synonyms: astaxanthin breakdown; astaxanthin catabolism; astaxanthin degradation
obsolete zeaxanthin bis(beta-D-glucoside) metabolic process (GO:1901828)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving zeaxanthin bis(beta-D-glucoside).
Synonyms: zeaxanthin bis(beta-D-glucoside) metabolism; zeaxanthin diglucoside metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
nicotinate metabolic process (GO:1901847)
Namespace: biological_process
Definition: The chemical reactions and pathways involving nicotinate.
Synonyms: nicotinate metabolism
nicotinate biosynthetic process (GO:1901849)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of nicotinate.
Synonyms: nicotinate anabolism; nicotinate biosynthesis; nicotinate formation; nicotinate synthesis
7,8-didemethyl-8-hydroxy-5-deazariboflavin catabolic process (GO:1901851)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of 7,8-didemethyl-8-hydroxy-5-deazariboflavin.
Synonyms: 7,8-didemethyl-8-hydroxy-5-deazariboflavin breakdown; 7,8-didemethyl-8-hydroxy-5-deazariboflavin catabolism; 7,8-didemethyl-8-hydroxy-5-deazariboflavin degradation; coenzyme F0 breakdown; coenzyme F0 catabolic process; coenzyme F0 catabolism; coenzyme F0 degradation
positive regulation of cellular respiration (GO:1901857)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of cellular respiration.
Synonyms: activation of cellular respiration; activation of oxidative metabolic process; activation of oxidative metabolism; activation of respiration; positive regulation of oxidative metabolic process; positive regulation of oxidative metabolism; positive regulation of respiration; up regulation of cellular respiration; up regulation of oxidative metabolic process; up regulation of oxidative metabolism; up regulation of respiration; up-regulation of cellular respiration; up-regulation of oxidative metabolic process; up-regulation of oxidative metabolism; up-regulation of respiration; upregulation of cellular respiration; upregulation of oxidative metabolic process; upregulation of oxidative metabolism; upregulation of respiration
regulation of muscle tissue development (GO:1901861)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of muscle tissue development.
capsorubin catabolic process (GO:1901865)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of capsorubin.
Synonyms: capsorubin breakdown; capsorubin catabolism; capsorubin degradation
capsorubin biosynthetic process (GO:1901866)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of capsorubin.
Synonyms: capsorubin anabolism; capsorubin biosynthesis; capsorubin formation; capsorubin synthesis
4-hydroxycoumarin catabolic process (GO:1901883)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of 4-hydroxycoumarin.
Synonyms: 4-hydroxycoumarin breakdown; 4-hydroxycoumarin catabolism; 4-hydroxycoumarin degradation
regulation of sclerotium development (GO:1901922)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of sclerotium development.
negative regulation of protein import into nucleus during spindle assembly checkpoint (GO:1901925)
Namespace: biological_process
Definition: Any process that stops, prevents, or reduces the frequency, rate or extent of the movement of proteins from the cytoplasm into the nucleus, and that occurs as a response to the mitotic cell cycle spindle assembly checkpoint. In S. cerevisiae, this process involves inhibition of the karyopherin/importin Kap121p (also known as Pse1p), which acts as the specific nuclear import receptor for several proteins, including Glc7p. Glc7p functions in opposition to key spindle assembly checkpoint protein Aurora kinase (Ipl1p).
Synonyms: Kap121p transport inhibitory pathway; KTIP; negative regulation of protein import into nucleus during mitotic cell cycle spindle assembly checkpoint
cadinene catabolic process (GO:1901927)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of cadinene.
Synonyms: cadinene breakdown; cadinene catabolism; cadinene degradation
obsolete 5alpha,9alpha,10beta-labda-8(20),13-dien-15-yl diphosphate metabolic process (GO:1901947)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving 5alpha,9alpha,10beta-labda-8(20),13-dien-15-yl diphosphate.
Synonyms: 5alpha,9alpha,10beta-labda-8(20),13-dien-15-yl diphosphate metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.
negative regulation of anterograde dense core granule transport (GO:1901952)
Namespace: biological_process
Definition: Any process that stops, prevents or reduces the frequency, rate or extent of anterograde dense core granule transport.
Synonyms: down regulation of anterograde dense core granule transport; down-regulation of anterograde dense core granule transport; downregulation of anterograde dense core granule transport; inhibition of anterograde dense core granule transport
obsolete regulation of cell proliferation involved in outflow tract morphogenesis (GO:1901963)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of cell proliferation involved in outflow tract morphogenesis.
Comment: This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.
obsolete positive regulation of cell proliferation involved in outflow tract morphogenesis (GO:1901964)
Namespace: biological_process
Definition: OBSOLETE. Any process that activates or increases the frequency, rate or extent of cell proliferation involved in outflow tract morphogenesis.
Synonyms: activation of cell proliferation involved in outflow tract morphogenesis; up regulation of cell proliferation involved in outflow tract morphogenesis; up-regulation of cell proliferation involved in outflow tract morphogenesis; upregulation of cell proliferation involved in outflow tract morphogenesis
Comment: This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.
proline binding (GO:1901973)
Namespace: molecular_function
Definition: Binding to proline.
negative regulation of cell cycle checkpoint (GO:1901977)
Namespace: biological_process
Definition: Any process that stops, prevents or reduces the frequency, rate or extent of cell cycle checkpoint.
Synonyms: down regulation of cell cycle checkpoint; down-regulation of cell cycle checkpoint; downregulation of cell cycle checkpoint; inhibition of cell cycle checkpoint; negative regulation of G1/S checkpoint; negative regulation of G1/S transition checkpoint
Comment: Note that this term should not be used for direct manual annotation as it should always be possible to specify the type of checkpoint (i.e mitotic spindle or DNA damage etc).
positive regulation of mitotic cell cycle phase transition (GO:1901992)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of mitotic cell cycle phase transition.
Synonyms: activation of mitotic cell cycle phase transition; up regulation of mitotic cell cycle phase transition; up-regulation of mitotic cell cycle phase transition; upregulation of mitotic cell cycle phase transition
regulation of indoleacetic acid biosynthetic process via tryptophan (GO:1901996)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of indoleacetic acid biosynthetic process via tryptophan.
Synonyms: regulation of IAA biosynthetic process via tryptophan; regulation of indoleacetic acid anabolism via tryptophan; regulation of indoleacetic acid formation via tryptophan; regulation of indoleacetic acid synthesis via tryptophan
homogentisate catabolic process (GO:1902000)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the breakdown of homogentisate.
Synonyms: homogentisate breakdown; homogentisate catabolism; homogentisate degradation
obsolete poly(glucopyranosyl N-acetylgalactosamine 1-phosphate) teichoic acid metabolic process (GO:1902015)
Namespace: biological_process
Definition: OBSOLETE. The chemical reactions and pathways involving poly(glucopyranosyl N-acetylgalactosamine 1-phosphate) teichoic acid.
Synonyms: poly(glucopyranosyl N-acetylgalactosamine 1-phosphate) teichoic acid metabolism; poly(glucosyl N-acetylgalactosamine 1-phosphate) teichoic acid metabolic process; poly(glucosyl N-acetylgalactosamine 1-phosphate) teichoic acid metabolism
Comment: This term was obsoleted because it is an unnecessary grouping class.