LiteFold/GO huggingface dataset:
obsolete regulation of CENP-A containing nucleosome assembly (GO:1903097)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the rate, frequency or extent of the formation of nucleosomes containing the histone H3 variant CENP-A to form centromeric chromatin. This specialised chromatin occurs at centromeric region in point centromeres, and the central core in modular centromeres.
Synonyms: regulation of CenH3-containing nucleosome assembly at centromere; regulation of CENP-A deposition; regulation of CENP-A loading; regulation of centromere specific nucleosome exchange; regulation of centromere-specific histone exchange; regulation of centromere-specific nucleosome assembly; regulation of centromeric DNA replication-independent nucleosome assembly; regulation of DNA replication-independent nucleosome assembly at centromere
Comment: This term has been obsoleted because this process is not known to be regulated.
negative regulation of single-strand break repair via homologous recombination (GO:1903111)
Namespace: biological_process
Definition: Any process that stops, prevents or reduces the frequency, rate or extent of single-strand break repair via homologous recombination.
Synonyms: down regulation of single-strand break repair via homologous recombination; down-regulation of single-strand break repair via homologous recombination; downregulation of single-strand break repair via homologous recombination; inhibition of single-strand break repair via homologous recombination
obsolete negative regulation of thioredoxin peroxidase activity (GO:1903124)
Namespace: biological_process
Definition: OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of thioredoxin peroxidase activity.
Synonyms: down regulation of thiol peroxidase activity; down regulation of thioredoxin peroxidase activity; down regulation of TPx activity; down regulation of TrxPx activity; down-regulation of thiol peroxidase activity; down-regulation of thioredoxin peroxidase activity; down-regulation of TPx activity; down-regulation of TrxPx activity; downregulation of thiol peroxidase activity; downregulation of thioredoxin peroxidase activity; downregulation of TPx activity; downregulation of TrxPx activity; inhibition of thiol peroxidase activity; inhibition of thioredoxin peroxidase activity; inhibition of TPx activity; inhibition of TrxPx activity; negative regulation of thiol peroxidase activity; negative regulation of TPx activity; negative regulation of TrxPx activity
Comment: This term was obsoleted because it represents a molecular function.
regulation of tube lumen cavitation (GO:1903132)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of tube lumen cavitation.
negative regulation of cell integrity MAPK cascade (GO:1903138)
Namespace: biological_process
Definition: Any process that stops, prevents or reduces the frequency, rate or extent of a cell integrity MAPK cascade.
Synonyms: inhibition of cell wall biogenesis, MAPKKK cascade; inhibition of Mpk1 cascade; inhibition of Pmk1 mitogen-activated protein kinase (MAPK) cell integrity pathway; negative regulation of cell integrity MAPK pathway; negative regulation of cell wall integrity MAPK cascade; negative regulation of MAPK cascade involved in cell wall biogenesis; negative regulation of Mpk1 cascade; negative regulation of Pmk1 MAPK cell integrity signaling; negative regulation of PMK1-MAPK signal transduction pathway
obsolete sodium ion transmembrane transporter activity involved in sodium ion import into cell (GO:1903163)
Namespace: molecular_function
Definition: OBSOLETE. Any sodium ion transmembrane transporter activity that is involved in sodium ion import into cell.
Synonyms: sodium ion transmembrane transporter activity involved in sodium ion import into cell; sodium transporter activity involved in sodium ion import into cell
Comment: This term was obsoleted at the TermGenie Gatekeeper stage.
response to polycyclic arene (GO:1903165)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a polycyclic arene stimulus.
fatty alcohol metabolic process (GO:1903173)
Namespace: biological_process
Definition: The chemical reactions and pathways involving fatty alcohol.
Synonyms: fatty alcohol metabolism
L-dopa biosynthetic process (GO:1903185)
Namespace: biological_process
Definition: The chemical reactions and pathways resulting in the formation of L-dopa.
Synonyms: L-dopa anabolism; L-dopa biosynthesis; L-dopa formation; L-dopa synthesis
obsolete negative regulation of oxidative stress-induced neuron death (GO:1903204)
Namespace: biological_process
Definition: OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of oxidative stress-induced neuron death.
Synonyms: down regulation of neuron death in response to oxidative stress; down regulation of neuronal cell death in response to oxidative stress; down regulation of oxidative stress-induced neuron death; down-regulation of neuron death in response to oxidative stress; down-regulation of neuronal cell death in response to oxidative stress; down-regulation of oxidative stress-induced neuron death; downregulation of neuron death in response to oxidative stress; downregulation of neuronal cell death in response to oxidative stress; downregulation of oxidative stress-induced neuron death; inhibition of neuron death in response to oxidative stress; inhibition of neuronal cell death in response to oxidative stress; inhibition of oxidative stress-induced neuron death; negative regulation of neuronal cell death in response to oxidative stress; neuronal protection under oxidative stress; neuroprotection against oxidative stress
podocyte apoptotic process (GO:1903210)
Namespace: biological_process
Definition: Any apoptotic process in a glomerular visceral epithelial cell.
Synonyms: glomerular podocyte apoptosis; glomerular podocyte apoptotic process; glomerular visceral epithelial cell apoptosis; glomerular visceral epithelial cell apoptotic process; podocyte apoptosis
quinolinic acid transmembrane transport (GO:1903222)
Namespace: biological_process
Definition: The process in which quinolinic acid is transported across a membrane.
negative regulation of endodermal cell differentiation (GO:1903225)
Namespace: biological_process
Definition: Any process that stops, prevents or reduces the frequency, rate or extent of endodermal cell differentiation.
Synonyms: down regulation of endoderm cell differentiation; down regulation of endodermal cell differentiation; down-regulation of endoderm cell differentiation; down-regulation of endodermal cell differentiation; downregulation of endoderm cell differentiation; downregulation of endodermal cell differentiation; inhibition of endoderm cell differentiation; inhibition of endodermal cell differentiation; negative regulation of endoderm cell differentiation
mRNA base-pairing post-transcriptional repressor activity (GO:1903231)
Namespace: molecular_function
Definition: A post-transcriptional repressor activity that acts by base-pairing with an mRNA to prevent gene expression. The binding can result in targeting the mRNA for degradation or interfering with mRNA translation resulting in post-transcriptional gene silencing.
Synonyms: mRNA base-pairing posttranscriptional repressor activity; mRNA base-pairing translational repressor activity; mRNA binding involved in cosuppression; mRNA binding involved in post-transcriptional gene silencing; mRNA binding involved in posttranscriptional gene silencing; mRNA binding involved in PTGS; mRNA binding involved in quelling; mRNA binding translation repressor activity; translational inhibitor activity via mRNA base-pairing
Comment: This term is intended for ncRNAs that act by base-pairing with a target mRNA.
regulation of calcium ion-dependent exocytosis of neurotransmitter (GO:1903233)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of calcium ion-dependent exocytosis of neurotransmitter.
Comment: An example of this is Rab3gap1 in mouse (Q80UJ7) in PMID:16782817 (IMP)
regulation of leukocyte tethering or rolling (GO:1903236)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of leukocyte tethering or rolling.
obsolete sorbose import across plasma membrane (GO:1903258)
Namespace: biological_process
Definition: OBSOLETE. The process in which sorbose is transported from outside of a cell, across the plasma membrane and into the cytosol.
Synonyms: sorbose import into cell
Comment: The reason for obsoletion is that there is no evidence that this process exists.
exon-exon junction complex disassembly (GO:1903259)
Namespace: biological_process
Definition: The disaggregation of an exon-exon junction complex into its constituent components.
Synonyms: EJC disassembly
phosphatase complex (GO:1903293)
Namespace: cellular_component
Definition: A protein complex which is capable of phosphatase activity.
Comment: An example of this is PTEN in human (P60484) in PMID:24766807 (inferred from direct assay).
obsolete positive regulation of pyruvate kinase activity (GO:1903304)
Namespace: biological_process
Definition: OBSOLETE. Any process that activates or increases the frequency, rate or extent of pyruvate kinase activity.
Synonyms: activation of ATP:pyruvate 2-O-phosphotransferase activity; activation of phosphoenol transphosphorylase activity; activation of phosphoenolpyruvate kinase activity; activation of pyruvate kinase activity; positive regulation of ATP:pyruvate 2-O-phosphotransferase activity; positive regulation of phosphoenol transphosphorylase activity; positive regulation of phosphoenolpyruvate kinase activity; up regulation of ATP:pyruvate 2-O-phosphotransferase activity; up regulation of phosphoenol transphosphorylase activity; up regulation of phosphoenolpyruvate kinase activity; up regulation of pyruvate kinase activity; up-regulation of ATP:pyruvate 2-O-phosphotransferase activity; up-regulation of phosphoenol transphosphorylase activity; up-regulation of phosphoenolpyruvate kinase activity; up-regulation of pyruvate kinase activity; upregulation of ATP:pyruvate 2-O-phosphotransferase activity; upregulation of phosphoenol transphosphorylase activity; upregulation of phosphoenolpyruvate kinase activity; upregulation of pyruvate kinase activity
Comment: This term was obsoleted because it represents a molecular function.
regulation of mRNA metabolic process (GO:1903311)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of mRNA metabolic process.
Synonyms: regulation of mRNA metabolism
negative regulation of mRNA metabolic process (GO:1903312)
Namespace: biological_process
Definition: Any process that stops, prevents or reduces the frequency, rate or extent of mRNA metabolic process.
Synonyms: down regulation of mRNA metabolic process; down regulation of mRNA metabolism; down-regulation of mRNA metabolic process; down-regulation of mRNA metabolism; downregulation of mRNA metabolic process; downregulation of mRNA metabolism; inhibition of mRNA metabolic process; inhibition of mRNA metabolism; negative regulation of mRNA metabolism
negative regulation of meiotic DNA double-strand break formation (GO:1903342)
Namespace: biological_process
Definition: Any process that stops, prevents or reduces the frequency, rate or extent of meiotic DNA double-strand break formation.
Synonyms: down regulation of meiotic DNA double-strand break formation; down-regulation of meiotic DNA double-strand break formation; downregulation of meiotic DNA double-strand break formation; inhibition of meiotic DNA double-strand break formation
omegasome membrane (GO:1903349)
Namespace: cellular_component
Definition: Any membrane that is part of an omegasome.
regulation of transcription initiation by RNA polymerase I (GO:1903357)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of transcription initiation from RNA polymerase I promoter.
Synonyms: regulation of transcription initiation from RNA polymerase I promoter; regulation of transcription initiation from RNA polymerase I promoter for nuclear large rRNA transcript
regulation of fear response (GO:1903365)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of fear response.
Synonyms: regulation of physiological fear response
positive regulation of fear response (GO:1903367)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of fear response.
Synonyms: activation of fear response; activation of physiological fear response; positive regulation of physiological fear response; up regulation of fear response; up regulation of physiological fear response; up-regulation of fear response; up-regulation of physiological fear response; upregulation of fear response; upregulation of physiological fear response
regulation of foraging behavior (GO:1903368)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of foraging behavior.
positive regulation of foraging behavior (GO:1903370)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of foraging behavior.
Synonyms: activation of foraging behavior; up regulation of foraging behavior; up-regulation of foraging behavior; upregulation of foraging behavior
negative regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway (GO:1903377)
Namespace: biological_process
Definition: Any process that stops, prevents or reduces the frequency, rate or extent of oxidative stress-induced neuron intrinsic apoptotic signaling pathway.
Synonyms: down regulation of neuron apoptosis in response to oxidative stress; down regulation of neuron intrinsic apoptotic signaling pathway in response to oxidative stress; down-regulation of neuron apoptosis in response to oxidative stress; down-regulation of neuron intrinsic apoptotic signaling pathway in response to oxidative stress; downregulation of neuron apoptosis in response to oxidative stress; downregulation of neuron intrinsic apoptotic signaling pathway in response to oxidative stress; inhibition of neuron apoptosis in response to oxidative stress; inhibition of neuron intrinsic apoptotic signaling pathway in response to oxidative stress; negative regulation of neuron apoptosis in response to oxidative stress; negative regulation of neuron intrinsic apoptotic signaling pathway in response to oxidative stress; negative regulation of oxidative stress-induced neuron apoptosis; neuroprotection against oxidative stress-induced apoptosis; protection against oxidative stress-induced neuron apoptosis; protection against oxidative stress-induced neuronal apoptosis
regulation of mitotic chromosome condensation (GO:1903379)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of mitotic chromosome condensation.
obsolete regulation of m7G(5')pppN diphosphatase activity (GO:1903398)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of m7G(5')pppN diphosphatase activity.
Synonyms: regulation of 7-methylguanosine-5'-triphospho-5'-polynucleotide 7-methylguanosine-5'-phosphohydrolase activity; regulation of decapase activity; regulation of M(7)G(5')pppN pyrophosphatase activity; regulation of m7G(5')pppN pyrophosphatase activity
Comment: This term was obsoleted because the obsoleted EC was obsoleted.
response to bile acid (GO:1903412)
Namespace: biological_process
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a bile acid stimulus.
positive regulation of constitutive secretory pathway (GO:1903435)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of constitutive secretory pathway.
Synonyms: activation of constitutive secretory pathway; up regulation of constitutive secretory pathway; up-regulation of constitutive secretory pathway; upregulation of constitutive secretory pathway
negative regulation of androst-4-ene-3,17-dione biosynthetic process (GO:1903455)
Namespace: biological_process
Definition: Any process that stops, prevents or reduces the frequency, rate or extent of androst-4-ene-3,17-dione biosynthetic process.
Synonyms: down regulation of androst-4-ene-3,17-dione anabolism; down regulation of androst-4-ene-3,17-dione biosynthesis; down regulation of androst-4-ene-3,17-dione biosynthetic process; down regulation of androst-4-ene-3,17-dione formation; down regulation of androst-4-ene-3,17-dione synthesis; down regulation of androstenedione biosynthetic process; down-regulation of androst-4-ene-3,17-dione anabolism; down-regulation of androst-4-ene-3,17-dione biosynthesis; down-regulation of androst-4-ene-3,17-dione biosynthetic process; down-regulation of androst-4-ene-3,17-dione formation; down-regulation of androst-4-ene-3,17-dione synthesis; down-regulation of androstenedione biosynthetic process; downregulation of androst-4-ene-3,17-dione anabolism; downregulation of androst-4-ene-3,17-dione biosynthesis; downregulation of androst-4-ene-3,17-dione biosynthetic process; downregulation of androst-4-ene-3,17-dione formation; downregulation of androst-4-ene-3,17-dione synthesis; downregulation of androstenedione biosynthetic process; inhibition of androst-4-ene-3,17-dione anabolism; inhibition of androst-4-ene-3,17-dione biosynthesis; inhibition of androst-4-ene-3,17-dione biosynthetic process; inhibition of androst-4-ene-3,17-dione formation; inhibition of androst-4-ene-3,17-dione synthesis; inhibition of androstenedione; negative regulation of androst-4-ene-3,17-dione anabolism; negative regulation of androst-4-ene-3,17-dione biosynthesis; negative regulation of androst-4-ene-3,17-dione formation; negative regulation of androst-4-ene-3,17-dione synthesis; negative regulation of androstenedione biosynthetic process
positive regulation of mitotic cell cycle DNA replication (GO:1903465)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of mitotic cell cycle DNA replication.
Synonyms: activation of DNA replication during S phase involved in mitotic cell cycle; activation of DNA replication involved in S phase involved in mitotic cell cycle; activation of DNA replication involved in S-phase involved in mitotic cell cycle; activation of mitotic cell cycle DNA replication; activation of mitotic nuclear cell cycle DNA replication; activation of nuclear cell cycle DNA replication involved in mitotic cell cycle; positive regulation of DNA replication during S phase involved in mitotic cell cycle; positive regulation of DNA replication involved in S phase involved in mitotic cell cycle; positive regulation of DNA replication involved in S-phase involved in mitotic cell cycle; positive regulation of mitotic nuclear cell cycle DNA replication; positive regulation of nuclear cell cycle DNA replication involved in mitotic cell cycle; up regulation of DNA replication during S phase involved in mitotic cell cycle; up regulation of DNA replication involved in S phase involved in mitotic cell cycle; up regulation of DNA replication involved in S-phase involved in mitotic cell cycle; up regulation of mitotic cell cycle DNA replication; up regulation of mitotic nuclear cell cycle DNA replication; up regulation of nuclear cell cycle DNA replication involved in mitotic cell cycle; up-regulation of DNA replication during S phase involved in mitotic cell cycle; up-regulation of DNA replication involved in S phase involved in mitotic cell cycle; up-regulation of DNA replication involved in S-phase involved in mitotic cell cycle; up-regulation of mitotic cell cycle DNA replication; up-regulation of mitotic nuclear cell cycle DNA replication; up-regulation of nuclear cell cycle DNA replication involved in mitotic cell cycle; upregulation of DNA replication during S phase involved in mitotic cell cycle; upregulation of DNA replication involved in S phase involved in mitotic cell cycle; upregulation of DNA replication involved in S-phase involved in mitotic cell cycle; upregulation of mitotic cell cycle DNA replication; upregulation of mitotic nuclear cell cycle DNA replication; upregulation of nuclear cell cycle DNA replication involved in mitotic cell cycle
positive regulation of DNA replication initiation (GO:1903468)
Namespace: biological_process
Definition: Any process that activates or increases the frequency, rate or extent of DNA replication initiation involved in mitotic DNA replication.
Synonyms: activation of DNA replication initiation involved in mitotic cell cycle DNA replication; activation of DNA replication initiation involved in mitotic DNA replication; positive regulation of DNA replication initiation involved in mitotic cell cycle DNA replication; up regulation of DNA replication initiation involved in mitotic cell cycle DNA replication; up regulation of DNA replication initiation involved in mitotic DNA replication; up-regulation of DNA replication initiation involved in mitotic cell cycle DNA replication; up-regulation of DNA replication initiation involved in mitotic DNA replication; upregulation of DNA replication initiation involved in mitotic cell cycle DNA replication; upregulation of DNA replication initiation involved in mitotic DNA replication
obsolete actomyosin contractile ring assembly involved in mitotic cell cycle (GO:1903470)
Namespace: biological_process
Definition: OBSOLETE. Any actomyosin contractile ring assembly that is involved in mitotic cell cycle.
Synonyms: constriction ring assembly involved in mitotic cell cycle; contractile ring assembly involved in mitotic cell cycle; cytokinesis, actomyosin contractile ring assembly involved in mitotic cell cycle; cytokinesis, actomyosin contractile ring formation involved in mitotic cell cycle; cytokinesis, actomyosin ring biosynthesis involved in mitotic cell cycle; cytokinesis, actomyosin ring formation involved in mitotic cell cycle; cytokinesis, contractile ring assembly involved in mitotic cell cycle
Comment: This term was obsoleted at the TermGenie Gatekeeper stage.
regulation of mitotic actomyosin contractile ring contraction (GO:1903471)
Namespace: biological_process
Definition: Any process that modulates the frequency, rate or extent of mitotic actomyosin contractile ring contraction.
Synonyms: regulation of contractile ring contraction involved in cell cycle cytokinesis involved in mitotic cell cycle; regulation of cytokinesis, actomyosin ring contraction involved in mitotic cell cycle; regulation of mitotic actomyosin contractile ring constriction
mitotic actomyosin contractile ring assembly actin filament organization (GO:1903479)
Namespace: biological_process
Definition: Any actin filament organization that is involved in mitotic actomyosin contractile ring assembly.
Synonyms: actin filament organisation involved in contractile ring assembly involved in mitotic cytokinesis; actin filament organisation involved in mitotic actomyosin contractile ring assembly; actin filament organization involved in mitotic actomyosin contractile ring assembly
obsolete regulation of actin filament organization involved in mitotic actomyosin contractile ring assembly (GO:1903480)
Namespace: biological_process
Definition: OBSOLETE. Any process that modulates the frequency, rate or extent of actin filament organization involved in mitotic actomyosin contractile ring assembly.
Synonyms: regulation of actin filament organisation involved in contractile ring assembly involved in mitotic cytokinesis; regulation of actin filament organisation involved in mitotic actomyosin contractile ring assembly
Comment: The reason for obsoletion is that this term is pre-composed and should be represented as a GO-CAM model.