Template-based RNA structure prediction advanced through a blind code competition
Year: 2025
Type: article
Language: en
Topic: RNA and protein synthesis mechanisms
Authors and affiliations:
raw_author_name: Youhan Lee
raw_affiliation_strings: NVIDIA, USA
raw_author_name: Shujun He
raw_affiliation_strings: Texas A&M University, College Station, TX, USA
raw_author_name: Toshiyuki Oda
raw_affiliation_strings: QuettaAI, Inc., Tokyo, Japan
raw_author_name: G. John Rao
raw_affiliation_strings: Anbogen Therapeutics, Inc
Architecture et Réactivité de l'ARN, Institut de Biologie Moléculaire et Cellulaire du CNRS, Université de Strasbourg, Strasbourg, France
Biophysics Program, Stanford University, Stanford, CA, USA
CZUR Technology Co., Ltd., Dalian, China
Department of Biochemistry and Molecular Biology, The University of Chicago, Chicago, IL, USA
Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY, USA
Department of Biochemistry, Stanford University School of Medicine, Stanford, CA, USA
Department of Biochemistry, University of Missouri, Columbia, MO, USA
Department of Biochemistry, University of Washington, Seattle, WA, USA
Department of Bioengineering and James Clark Center, Stanford University, Stanford, CA, USA
Department of Cariology and Endodontics, West China Hospital of Stomatology, Sichuan University, Chengdu, China
Department of Cell Biology and Molecular Genetics, University of Maryland, MD, USA
Department of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden
Department of Chemistry and Biochemistry, University of California San Diego, CA, USA
Department of Chemistry, The University of Chicago, Chicago, IL, USA
Department of Computer Science and Technology, University of Cambridge, UK
Department of Microbiology and Immunology, Stanford University, Stanford, CA, USA
Department of Molecular Biophysics and Biochemistry, Yale University, CT, USA
Department of Physics and Astronomy, University of Missouri, Columbia, MO, USA
Division of CryoEM and Bioimaging, SSRL-SLAC National Accelerator Laboratory, Menlo Park, CA, USA
Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei 230026, China
Eigen Bio, New York, NY
European Molecular Biology Laboratory (EMBL), Grenoble, France
Google, Kaggle, Mountain View, CA, USA
Guangzhou National Laboratory, Guangzhou International Bio Island, Guangzhou, China
Howard Hughes Medical Institute, Stanford, CA, USA
Howard Hughes Medical Institute, University of Washington, Seattle, WA USA
Institut Pasteur, Imaging and Modeling Unit, F-75015 Paris, France
Institute for Bioscience and Biotechnology Research, Rockville, MD, USA
Institute of Data Sciences and Informatics, University of Missouri, Columbia, MO, USA
Istituto Italiano di Tecnologia, Genoa, Italy
Medical Equipment Management Center, University of Toyama Hospital, Toyama, Japan
Mohamed bin Zayed University of Artificial Intelligence, Abu Dhabi, United Arab Emirates
NVIDIA, USA
PeptiDream Inc., Kanagawa, Japan
Professorship of Media Informatics, Chemnitz University of Technology, Chemnitz, Germany
QuettaAI, Inc., Tokyo, Japan
Science for Life Laboratory, Department of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden
Sichuan Intelligent Expressway Technology Co., Ltd, ChengDu, China
State Key Laboratory of Biotherapy, West China Hospital, Sichuan University
Texas A&M University, College Station, TX, USA
The State Key Laboratory of Oral Diseases, National Clinical Research Center for Oral Diseases, National Center for Stomatology, West China Hospital of Stomatology, Sichuan University, Chengdu, China
University of California, Davis, CA, USA
University of Maryland, Baltimore County, MD, USA
University of Montevideo, Montevideo, Uruguay
Wenzhou Institute, University of Chinese Academy of Sciences, Wenzhou, China
Zhejiang University-University of Edinburgh Institute, Zhejiang University, Haining, Zhejiang, China
raw_author_name: Yehyun Kim
raw_affiliation_strings: Eigen Bio, New York, NY
raw_author_name: Raehyun Kim
raw_affiliation_strings: Eigen Bio, New York, NY
raw_author_name: Hyunjin Kim
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raw_author_name: Cher Keng Heng
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Architecture et Réactivité de l'ARN, Institut de Biologie Moléculaire et Cellulaire du CNRS, Université de Strasbourg, Strasbourg, France
Biophysics Program, Stanford University, Stanford, CA, USA
CZUR Technology Co., Ltd., Dalian, China
Department of Biochemistry and Molecular Biology, The University of Chicago, Chicago, IL, USA
Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY, USA
Department of Biochemistry, Stanford University School of Medicine, Stanford, CA, USA
Department of Biochemistry, University of Missouri, Columbia, MO, USA
Department of Biochemistry, University of Washington, Seattle, WA, USA
Department of Bioengineering and James Clark Center, Stanford University, Stanford, CA, USA
Department of Cariology and Endodontics, West China Hospital of Stomatology, Sichuan University, Chengdu, China
Department of Cell Biology and Molecular Genetics, University of Maryland, MD, USA
Department of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden
Department of Chemistry and Biochemistry, University of California San Diego, CA, USA
Department of Chemistry, The University of Chicago, Chicago, IL, USA
Department of Computer Science and Technology, University of Cambridge, UK
Department of Microbiology and Immunology, Stanford University, Stanford, CA, USA
Department of Molecular Biophysics and Biochemistry, Yale University, CT, USA
Department of Physics and Astronomy, University of Missouri, Columbia, MO, USA
Division of CryoEM and Bioimaging, SSRL-SLAC National Accelerator Laboratory, Menlo Park, CA, USA
Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei 230026, China
Eigen Bio, New York, NY
European Molecular Biology Laboratory (EMBL), Grenoble, France
Google, Kaggle, Mountain View, CA, USA
Guangzhou National Laboratory, Guangzhou International Bio Island, Guangzhou, China
Howard Hughes Medical Institute, Stanford, CA, USA
Howard Hughes Medical Institute, University of Washington, Seattle, WA USA
Institut Pasteur, Imaging and Modeling Unit, F-75015 Paris, France
Institute for Bioscience and Biotechnology Research, Rockville, MD, USA
Institute of Data Sciences and Informatics, University of Missouri, Columbia, MO, USA
Istituto Italiano di Tecnologia, Genoa, Italy
Medical Equipment Management Center, University of Toyama Hospital, Toyama, Japan
Mohamed bin Zayed University of Artificial Intelligence, Abu Dhabi, United Arab Emirates
NVIDIA, USA
PeptiDream Inc., Kanagawa, Japan
Professorship of Media Informatics, Chemnitz University of Technology, Chemnitz, Germany
QuettaAI, Inc., Tokyo, Japan
Science for Life Laboratory, Department of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden
Sichuan Intelligent Expressway Technology Co., Ltd, ChengDu, China
State Key Laboratory of Biotherapy, West China Hospital, Sichuan University
Texas A&M University, College Station, TX, USA
The State Key Laboratory of Oral Diseases, National Clinical Research Center for Oral Diseases, National Center for Stomatology, West China Hospital of Stomatology, Sichuan University, Chengdu, China
University of California, Davis, CA, USA
University of Maryland, Baltimore County, MD, USA
University of Montevideo, Montevideo, Uruguay
Wenzhou Institute, University of Chinese Academy of Sciences, Wenzhou, China
Zhejiang University-University of Edinburgh Institute, Zhejiang University, Haining, Zhejiang, China
raw_author_name: Danny Kowerko
raw_affiliation_strings: Professorship of Media Informatics, Chemnitz University of Technology, Chemnitz, Germany
raw_author_name: Haowei Li
raw_affiliation_strings: CZUR Technology Co., Ltd., Dalian, China
raw_author_name: Hoa Nguyen
raw_affiliation_strings: Institut Pasteur, Imaging and Modeling Unit, F-75015 Paris, France
raw_author_name: Arunodhayan Sampathkumar
raw_affiliation_strings: Professorship of Media Informatics, Chemnitz University of Technology, Chemnitz, Germany
raw_author_name: Raúl Enrique Gómez
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Architecture et Réactivité de l'ARN, Institut de Biologie Moléculaire et Cellulaire du CNRS, Université de Strasbourg, Strasbourg, France
Biophysics Program, Stanford University, Stanford, CA, USA
CZUR Technology Co., Ltd., Dalian, China
Department of Biochemistry and Molecular Biology, The University of Chicago, Chicago, IL, USA
Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY, USA
Department of Biochemistry, Stanford University School of Medicine, Stanford, CA, USA
Department of Biochemistry, University of Missouri, Columbia, MO, USA
Department of Biochemistry, University of Washington, Seattle, WA, USA
Department of Bioengineering and James Clark Center, Stanford University, Stanford, CA, USA
Department of Cariology and Endodontics, West China Hospital of Stomatology, Sichuan University, Chengdu, China
Department of Cell Biology and Molecular Genetics, University of Maryland, MD, USA
Department of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden
Department of Chemistry and Biochemistry, University of California San Diego, CA, USA
Department of Chemistry, The University of Chicago, Chicago, IL, USA
Department of Computer Science and Technology, University of Cambridge, UK
Department of Microbiology and Immunology, Stanford University, Stanford, CA, USA
Department of Molecular Biophysics and Biochemistry, Yale University, CT, USA
Department of Physics and Astronomy, University of Missouri, Columbia, MO, USA
Division of CryoEM and Bioimaging, SSRL-SLAC National Accelerator Laboratory, Menlo Park, CA, USA
Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei 230026, China
Eigen Bio, New York, NY
European Molecular Biology Laboratory (EMBL), Grenoble, France
Google, Kaggle, Mountain View, CA, USA
Guangzhou National Laboratory, Guangzhou International Bio Island, Guangzhou, China
Howard Hughes Medical Institute, Stanford, CA, USA
Howard Hughes Medical Institute, University of Washington, Seattle, WA USA
Institut Pasteur, Imaging and Modeling Unit, F-75015 Paris, France
Institute for Bioscience and Biotechnology Research, Rockville, MD, USA
Institute of Data Sciences and Informatics, University of Missouri, Columbia, MO, USA
Istituto Italiano di Tecnologia, Genoa, Italy
Medical Equipment Management Center, University of Toyama Hospital, Toyama, Japan
Mohamed bin Zayed University of Artificial Intelligence, Abu Dhabi, United Arab Emirates
NVIDIA, USA
PeptiDream Inc., Kanagawa, Japan
Professorship of Media Informatics, Chemnitz University of Technology, Chemnitz, Germany
QuettaAI, Inc., Tokyo, Japan
Science for Life Laboratory, Department of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden
Sichuan Intelligent Expressway Technology Co., Ltd, ChengDu, China
State Key Laboratory of Biotherapy, West China Hospital, Sichuan University
Texas A&M University, College Station, TX, USA
The State Key Laboratory of Oral Diseases, National Clinical Research Center for Oral Diseases, National Center for Stomatology, West China Hospital of Stomatology, Sichuan University, Chengdu, China
University of California, Davis, CA, USA
University of Maryland, Baltimore County, MD, USA
University of Montevideo, Montevideo, Uruguay
Wenzhou Institute, University of Chinese Academy of Sciences, Wenzhou, China
Zhejiang University-University of Edinburgh Institute, Zhejiang University, Haining, Zhejiang, China
raw_author_name: Meng Chen
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raw_author_name: Shun Kuraishi
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raw_author_name: Kenji Ogawa
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raw_author_name: Shuxian Zou
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Biophysics Program, Stanford University, Stanford, CA, USA
CZUR Technology Co., Ltd., Dalian, China
Department of Biochemistry and Molecular Biology, The University of Chicago, Chicago, IL, USA
Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY, USA
Department of Biochemistry, Stanford University School of Medicine, Stanford, CA, USA
Department of Biochemistry, University of Missouri, Columbia, MO, USA
Department of Biochemistry, University of Washington, Seattle, WA, USA
Department of Bioengineering and James Clark Center, Stanford University, Stanford, CA, USA
Department of Cariology and Endodontics, West China Hospital of Stomatology, Sichuan University, Chengdu, China
Department of Cell Biology and Molecular Genetics, University of Maryland, MD, USA
Department of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden
Department of Chemistry and Biochemistry, University of California San Diego, CA, USA
Department of Chemistry, The University of Chicago, Chicago, IL, USA
Department of Computer Science and Technology, University of Cambridge, UK
Department of Microbiology and Immunology, Stanford University, Stanford, CA, USA
Department of Molecular Biophysics and Biochemistry, Yale University, CT, USA
Department of Physics and Astronomy, University of Missouri, Columbia, MO, USA
Division of CryoEM and Bioimaging, SSRL-SLAC National Accelerator Laboratory, Menlo Park, CA, USA
Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei 230026, China
Eigen Bio, New York, NY
European Molecular Biology Laboratory (EMBL), Grenoble, France
Google, Kaggle, Mountain View, CA, USA
Guangzhou National Laboratory, Guangzhou International Bio Island, Guangzhou, China
Howard Hughes Medical Institute, Stanford, CA, USA
Howard Hughes Medical Institute, University of Washington, Seattle, WA USA
Institut Pasteur, Imaging and Modeling Unit, F-75015 Paris, France
Institute for Bioscience and Biotechnology Research, Rockville, MD, USA
Institute of Data Sciences and Informatics, University of Missouri, Columbia, MO, USA
Istituto Italiano di Tecnologia, Genoa, Italy
Medical Equipment Management Center, University of Toyama Hospital, Toyama, Japan
Mohamed bin Zayed University of Artificial Intelligence, Abu Dhabi, United Arab Emirates
NVIDIA, USA
PeptiDream Inc., Kanagawa, Japan
Professorship of Media Informatics, Chemnitz University of Technology, Chemnitz, Germany
QuettaAI, Inc., Tokyo, Japan
Science for Life Laboratory, Department of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden
Sichuan Intelligent Expressway Technology Co., Ltd, ChengDu, China
State Key Laboratory of Biotherapy, West China Hospital, Sichuan University
Texas A&M University, College Station, TX, USA
The State Key Laboratory of Oral Diseases, National Clinical Research Center for Oral Diseases, National Center for Stomatology, West China Hospital of Stomatology, Sichuan University, Chengdu, China
University of California, Davis, CA, USA
University of Maryland, Baltimore County, MD, USA
University of Montevideo, Montevideo, Uruguay
Wenzhou Institute, University of Chinese Academy of Sciences, Wenzhou, China
Zhejiang University-University of Edinburgh Institute, Zhejiang University, Haining, Zhejiang, China
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