IHMValidation: Assessment of Integrative Structure Models Deposited to the Protein Data Bank
Year: 2025
Type: article
Language: en
Topic: Enzyme Structure and Function
Authors and affiliations:
raw_author_name: Arthur O. Zalevsky
raw_affiliation_strings: Research Collaboratory for Structural Bioinformatics Protein Data Bank, Department of Bioengineering and Therapeutic Sciences, the Quantitative Biosciences Institute (QBI), and the Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA 94157, USA. Electronic address: arthur.zalevsky@rcsb.org
raw_author_name: Brinda Vallat
raw_affiliation_strings: Research Collaboratory for Structural Bioinformatics Protein Data Bank and the Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA; Rutgers Cancer Institute, Rutgers, The State University of New Jersey, New Brunswick, NJ 08901, USA. Electronic address: brinda.vallat@rcsb.org
raw_author_name: Benjamin M. Webb
raw_affiliation_strings: Research Collaboratory for Structural Bioinformatics Protein Data Bank, Department of Bioengineering and Therapeutic Sciences, the Quantitative Biosciences Institute (QBI), and the Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA 94157, USA
raw_author_name: Hongsuda Tangmunarunkit
raw_affiliation_strings: Information Sciences Institute, Viterbi School of Engineering, University of Southern California, Los Angeles, CA, USA
raw_author_name: Monica R. Sekharan
raw_affiliation_strings: Research Collaboratory for Structural Bioinformatics Protein Data Bank and the Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA
raw_author_name: Aref Shafaeibejestan
raw_affiliation_strings: Information Sciences Institute, Viterbi School of Engineering, University of Southern California, Los Angeles, CA, USA
raw_author_name: Sai Ganesan
raw_affiliation_strings: Research Collaboratory for Structural Bioinformatics Protein Data Bank, Department of Bioengineering and Therapeutic Sciences, the Quantitative Biosciences Institute (QBI), and the Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA 94157, USA
raw_author_name: Jared Sagendorf
raw_affiliation_strings: Research Collaboratory for Structural Bioinformatics Protein Data Bank, Department of Bioengineering and Therapeutic Sciences, the Quantitative Biosciences Institute (QBI), and the Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA 94157, USA
raw_author_name: Cy M. Jeffries
raw_affiliation_strings: European Molecular Biology Laboratory, Hamburg Unit, c/o Deutsches Elektronen-Synchrotron, Notkestraße 85, 22607 Hamburg, Germany; Ilse Katz Institute for Nanoscale Science and Technology, Ben-Gurion University of the Negev, Be'er Sheva 8410501, Israel
raw_author_name: Jill Trewhella
raw_affiliation_strings: School of Life and Environmental Sciences, University of Sydney, NSW 2006, Australia; Department of Chemistry, University of Utah, Salt Lake City, UT 84112, USA
raw_author_name: Andrea Graziadei
raw_affiliation_strings: Human Technopole, Via Rita Levi Montalcini 1, 20157 Milano, Italy
raw_author_name: Juan Antonio Vizcaíno
raw_affiliation_strings: European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust, Genome Campus, Hinxton, Cambridge CB10 1SD, UK
raw_author_name: Alexander Leitner
raw_affiliation_strings: Institute of Molecular Systems Biology, Department of Biology, ETH Zürich, 8093 Zurich, Switzerland
raw_author_name: Juri Rappsilber
raw_affiliation_strings: Technische Universität Berlin, Chair of Bioanalytics, 10623 Berlin, Germany; Si-M/""Der Simulierte Mensch"", a Science Framework of Technische Universität Berlin and Charité - Universitätsmedizin Berlin, Berlin, Germany
raw_author_name: Ezra Peisach
raw_affiliation_strings: Research Collaboratory for Structural Bioinformatics Protein Data Bank and the Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA
raw_author_name: Justin W. Flatt
raw_affiliation_strings: Research Collaboratory for Structural Bioinformatics Protein Data Bank and the Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA
raw_author_name: Jasmine Y. Young
raw_affiliation_strings: Research Collaboratory for Structural Bioinformatics Protein Data Bank and the Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA
raw_author_name: Kartik Majila
raw_affiliation_strings: National Center for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, Karnataka 560065, India
raw_author_name: Shruthi Viswanath
raw_affiliation_strings: National Center for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, Karnataka 560065, India
raw_author_name: Carl Kesselman
raw_affiliation_strings: Information Sciences Institute, Viterbi School of Engineering, University of Southern California, Los Angeles, CA, USA
raw_author_name: Jeffrey C. Hoch
raw_affiliation_strings: Biological Magnetic Resonance Data Bank, Department of Molecular Biology and Biophysics, University of Connecticut, Farmington, CT 06030-3305, USA
raw_author_name: Genji Kurisu
raw_affiliation_strings: Protein Data Bank Japan, Institute for Protein Research, Osaka University, Suita, Osaka 565-0871, Japan
raw_author_name: Kyle L. Morris
raw_affiliation_strings: Electron Microscopy Data Bank, European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK
raw_author_name: Sameer Velankar
raw_affiliation_strings: Protein Data Bank in Europe, European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK
raw_author_name: Helen M. Berman
raw_affiliation_strings: Research Collaboratory for Structural Bioinformatics Protein Data Bank and the Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA; Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA; Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA 90089, USA
raw_author_name: Stephen K. Burley
raw_affiliation_strings: Research Collaboratory for Structural Bioinformatics Protein Data Bank and the Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA; Rutgers Cancer Institute, Rutgers, The State University of New Jersey, New Brunswick, NJ 08901, USA; Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA; Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center, University of California, La Jolla, CA 92093, USA; Rutgers Artificial Intelligence and Data Science (RAD) Collaboratory, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA
raw_author_name: Andrej Sali
raw_affiliation_strings: Research Collaboratory for Structural Bioinformatics Protein Data Bank, Department of Bioengineering and Therapeutic Sciences, the Quantitative Biosciences Institute (QBI), and the Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA 94157, USA. Electronic address: sali@salilab.org