CholeraSeq: a comprehensive genomic pipeline for cholera surveillance and near real-time outbreak investigation
Year: 2025
Type: article
Language: en
Topic: Vibrio bacteria research studies
Authors and affiliations:
raw_author_name: Massimiliano S Tagliamonte
raw_affiliation_strings: Interdisciplinary Center for Biotechnology Research, University of Florida , Gainesville, FL, 32601,
University of Florida Interdisciplinary Center for Biotechnology Research, , Gainesville, Florida,
raw_author_name: Abhinav Sharma
raw_affiliation_strings: DSI-NRF Centre of Excellence for Biomedical Tuberculosis Research, SAMRC Centre for Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University , Cape Town, 7505,
Stellenbosch University ; Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, , Cape Town,
DSI-NRF Centre of Excellence for Biomedical Tuberculosis Research; SAMRC Centre for Tuberculosis Research ; Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, , Cape Town,
raw_author_name: Alberto Riva
raw_affiliation_strings: Interdisciplinary Center for Biotechnology Research, University of Florida , Gainesville, FL, 32601,
University of Florida Interdisciplinary Center for Biotechnology Research, , Gainesville, Florida,
raw_author_name: Monika Moir
raw_affiliation_strings: Centre for Epidemic Response and Innovation, School for Data Science and Computational Thinking, Stellenbosch University , Stellenbosch, 7600,
Stellenbosch University Centre for Epidemic Response and Innovation, School for Data Science and Computational Thinking, , Stellenbosch,
raw_author_name: Marco Salemi
raw_affiliation_strings: Emerging Pathogens Institute, Department of Pathology, College of Medicine, Emerging Pathogens Institute, University of Florida , Gainesville, FL, 32601,
Emerging Pathogens Institute , Department of Pathology, College of Medicine, , Gainesville, Florida,
University of Florida , Department of Pathology, College of Medicine, , Gainesville, Florida,
raw_author_name: Cheryl Baxter
raw_affiliation_strings: Centre for Epidemic Response and Innovation, School for Data Science and Computational Thinking, Stellenbosch University , Stellenbosch, 7600,
Stellenbosch University Centre for Epidemic Response and Innovation, School for Data Science and Computational Thinking, , Stellenbosch,
raw_author_name: Tulio de Oliveira
raw_affiliation_strings: Centre for Epidemic Response and Innovation, School for Data Science and Computational Thinking, Stellenbosch University , Stellenbosch, 7600,
Stellenbosch University Centre for Epidemic Response and Innovation, School for Data Science and Computational Thinking, , Stellenbosch,
raw_author_name: Carla N Mavian
raw_affiliation_strings: Centre for Epidemic Response and Innovation, School for Data Science and Computational Thinking, Stellenbosch University , Stellenbosch, 7600,
Emerging Pathogens Institute, Department of Pathology, College of Medicine, Emerging Pathogens Institute, University of Florida , Gainesville, FL, 32601,
University of Florida , Department of Pathology, College of Medicine, , Gainesville, Florida,
Stellenbosch University Centre for Epidemic Response and Innovation, School for Data Science and Computational Thinking, , Stellenbosch,
Emerging Pathogens Institute , Department of Pathology, College of Medicine, , Gainesville, Florida,
raw_author_name: Eduan Wilkinson
raw_affiliation_strings: Centre for Epidemic Response and Innovation, School for Data Science and Computational Thinking, Stellenbosch University , Stellenbosch, 7600,
Stellenbosch University Centre for Epidemic Response and Innovation, School for Data Science and Computational Thinking, , Stellenbosch,