Benchmarking of duplex sequencing approaches to reveal somatic mutation landscapes
Year: 2025
Type: article
Language: en
Topic: Cancer Genomics and Diagnostics
Authors and affiliations:
raw_author_name: Yang Zhang
raw_affiliation_strings: Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA
Quantitative and Computational Biology Graduate Program, Baylor College of Medicine, Houston, TX, USA
raw_author_name: Vinayak V. Viswanadham
raw_affiliation_strings: Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA
raw_author_name: Michail Andreopoulos
raw_affiliation_strings: Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA
raw_author_name: Dominik Glodzik
raw_affiliation_strings: Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA
raw_author_name: Ruolin Liu
raw_affiliation_strings: Broad Institute of MIT and Harvard, Cambridge, MA, USA
raw_author_name: Lovelace J. Luquette
raw_affiliation_strings: Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA
raw_author_name: Se-Young Jo
raw_affiliation_strings: Division of Genetics and Genomics, Boston Children's Hospital, Boston, MA, USA
Division of Genetics and Genomics, Boston Childrens Hospital, Boston, MA, USA
raw_author_name: Azeet Narayan
raw_affiliation_strings: Broad Institute of MIT and Harvard, Cambridge, MA, USA
raw_author_name: Muchun Niu
raw_affiliation_strings: Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA
raw_author_name: Lisa Anderson
raw_affiliation_strings: Broad Institute of MIT and Harvard, Cambridge, MA, USA
raw_author_name: Joseph A. Brew
raw_affiliation_strings: Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA
raw_author_name: Hsu Chao
raw_affiliation_strings: Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA
raw_author_name: Carrie Cibulskis
raw_affiliation_strings: Broad Institute of MIT and Harvard, Cambridge, MA, USA
raw_author_name: Guanlan Dong
raw_affiliation_strings: Division of Genetics and Genomics, Boston Children's Hospital, Boston, MA, USA
Division of Genetics and Genomics, Boston Childrens Hospital, Boston, MA, USA
raw_author_name: Uday S. Evani
raw_affiliation_strings: New York Genome Center, New York, NY, USA
raw_author_name: William C. Feng
raw_affiliation_strings: Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA
raw_author_name: Marta Grońska-Pęski
raw_affiliation_strings: Center for Human Genetics and Genomics, New York University Grossman School of Medicine, New York, NY, USA
raw_author_name: Adrienne Helland
raw_affiliation_strings: New York Genome Center, New York, NY, USA
raw_author_name: Nazia Hilal
raw_affiliation_strings: Division of Genetics and Genomics, Boston Children's Hospital, Boston, MA, USA
Division of Genetics and Genomics, Boston Childrens Hospital, Boston, MA, USA
raw_author_name: Nisrine T. Jabara
raw_affiliation_strings: Center for Human Genetics and Genomics, New York University Grossman School of Medicine, New York, NY, USA
raw_author_name: Hu Jin
raw_affiliation_strings: Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA
raw_author_name: Ning Li
raw_affiliation_strings: Broad Institute of MIT and Harvard, Cambridge, MA, USA
raw_author_name: Monica D. Manam
raw_affiliation_strings: Division of Genetics and Genomics, Boston Children's Hospital, Boston, MA, USA
Division of Genetics and Genomics, Boston Childrens Hospital, Boston, MA, USA
raw_author_name: Shayna L. Mallett
raw_affiliation_strings: Department of Pediatrics, Harvard Medical School, Boston, MA, USA
Division of Genetics and Genomics, Boston Children's Hospital, Boston, MA, USA
Manton Center for Orphan Disease Research, Boston Children's Hospital, Boston, MA, USA
Division of Genetics and Genomics, Boston Childrens Hospital, Boston, MA, USA
raw_author_name: Alexi Runnels
raw_affiliation_strings: New York Genome Center, New York, NY, USA
raw_author_name: Constantijn Scharlee
raw_affiliation_strings: Broad Institute of MIT and Harvard, Cambridge, MA, USA
European Bioinformatics Institute, European Molecular Biology Laboratory (EMBL-EBI), Cambridge, UK
raw_author_name: Carter Smith
raw_affiliation_strings: Broad Institute of MIT and Harvard, Cambridge, MA, USA
raw_author_name: SMaHT Duplex Sequencing Focus Group
raw_affiliation_strings: Department of Neurology, Boston Childrens Hospital
Harvard Medical School
raw_author_name: Diane Shao
raw_affiliation_strings: Department of Neurology, Boston Children's Hospital, Boston, MA, USA
Division of Genetics and Genomics, Boston Childrens Hospital, Boston, MA, USA
raw_author_name: Christopher A. Walsh
raw_affiliation_strings: Department of Neurology, Boston Children's Hospital, Boston, MA, USA
Departments of Pediatrics, Harvard Medical School, Boston, MA, USA
Division of Genetics and Genomics, Boston Children's Hospital, Boston, MA, USA
Howard Hughes Medical Institute, Boston, MA, USA
Broad Institute of MIT and Harvard, Cambridge MA, USA
raw_author_name: Viktor A. Adalsteinsson
raw_affiliation_strings: Broad Institute of MIT and Harvard, Cambridge, MA, USA
New York Genome Center, New York, NY, USA
raw_author_name: Eunjung Alice Lee
raw_affiliation_strings: Broad Institute of MIT and Harvard, Cambridge, MA, USA
Department of Pediatrics, Harvard Medical School, Boston, MA, USA
Division of Genetics and Genomics, Boston Children's Hospital, Boston, MA, USA
Manton Center for Orphan Disease Research, Boston Children's Hospital, Boston, MA, USA
Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA
raw_author_name: Peter J. Park
raw_affiliation_strings: Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA
Ludwig Center at Harvard, Harvard Medical School, Boston, MA, USA
Division of Genetics and Genomics, Boston Childrens Hospital, Boston, MA, USA
raw_author_name: Kristin G. Ardlie
raw_affiliation_strings: Broad Institute of MIT and Harvard, Cambridge, MA, USA
Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA
raw_author_name: Soren Germer
raw_affiliation_strings: New York Genome Center, New York, NY, USA
Center for Human Genetics and Genomics, New York University Grossman School of Medicine, New York, NY, USA
raw_author_name: Richard A. Gibbs
raw_affiliation_strings: Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA
Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA
raw_author_name: Sangita Choudhury
raw_affiliation_strings: Broad Institute of MIT and Harvard, Cambridge, MA, USA
Departments of Pediatrics, Harvard Medical School, Boston, MA, USA
Division of Genetics and Genomics, Boston Children's Hospital, Boston, MA, USA
Broad Institute of MIT and Harvard
raw_author_name: Harsha V. Doddapaneni
raw_affiliation_strings: Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA
raw_author_name: Gilad D. Evrony
raw_affiliation_strings: Center for Human Genetics and Genomics, New York University Grossman School of Medicine, New York, NY, USA
Department of Neuroscience and Physiology, New York University Grossman School of Medicine, New York, NY, USA
Department of Pediatrics, New York University Grossman School of Medicine, New York, NY, USA
raw_author_name: Chenghang Zong
raw_affiliation_strings: Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA
Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA
raw_author_name: Tim H.H. Coorens
raw_affiliation_strings: Broad Institute of MIT and Harvard, Cambridge, MA, USA
European Bioinformatics Institute, European Molecular Biology Laboratory (EMBL-EBI), Cambridge, UK
Genome Biology Unit, European Molecular Biology, Laboratory, Heidelberg, Germany