LinkML: an open data modeling framework
Year: 2025
Type: article
Language: en
Topic: Research Data Management Practices
Authors and affiliations:
raw_author_name: Sierra A T Moxon
raw_affiliation_strings: Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory , Berkeley, CA 94720 ,
Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
raw_author_name: Harold Solbrig
raw_affiliation_strings: School of Medicine, Johns Hopkins University , Baltimore, MD 21287 ,
School of Medicine, Johns Hopkins University, Baltimore, MD 21287, USA
raw_author_name: Nomi L Harris
raw_affiliation_strings: Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory , Berkeley, CA 94720 ,
Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
raw_author_name: Patrick Kalita
raw_affiliation_strings: Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory , Berkeley, CA 94720 ,
Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
raw_author_name: Mark A Miller
raw_affiliation_strings: Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory , Berkeley, CA 94720 ,
Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
raw_author_name: Sujay Patil
raw_affiliation_strings: Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory , Berkeley, CA 94720 ,
Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
raw_author_name: Kevin Schaper
raw_affiliation_strings: University of North Carolina at Chapel Hill Department of Genetics, , Chapel Hill, NC 27599 ,
Department of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
raw_author_name: Chris Bizon
raw_affiliation_strings: Renaissance Computing Institute, University of North Carolina at Chapel Hill , Chapel Hill, NC 27517 ,
Renaissance Computing Institute, University of North Carolina at Chapel Hill, Chapel Hill, NC 27517, USA
raw_author_name: J Harry Caufield
raw_affiliation_strings: Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory , Berkeley, CA 94720 ,
Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
raw_author_name: Silvano Cirujano Cuesta
raw_affiliation_strings: Siemens AG , Munich 80333 ,
Siemens AG, Munich, 80333, Germany
raw_author_name: Corey Cox
raw_affiliation_strings: University of North Carolina at Chapel Hill Department of Genetics, , Chapel Hill, NC 27599 ,
Department of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
raw_author_name: Frank Dekervel
raw_affiliation_strings: Kapernikov , Leuven 3010 ,
Kapernikov, Leuven, 3010, Belgium
raw_author_name: Damion M Dooley
raw_affiliation_strings: Faculty of Health Sciences, Simon Fraser University , Burnaby, BC V5A 1S6 ,
Faculty of Health Sciences, Simon Fraser University, Burnaby, BC V5A 1S6, Canada
raw_author_name: William D Duncan
raw_affiliation_strings: University of Florida College of Dentistry Community Dentistry and Behavioral Science, , Gainesville, FL 32610 ,
Community Dentistry and Behavioral Science, University of Florida College of Dentistry, Gainesville, FL 32610, USA
raw_author_name: Tim Fliss
raw_affiliation_strings: Data and Technology, Allen Institute , Seattle, WA 98109 ,
Data and Technology, Allen Institute, Seattle, WA 98109, USA
raw_author_name: Sarah Gehrke
raw_affiliation_strings: University of North Carolina at Chapel Hill Department of Genetics, , Chapel Hill, NC 27599 ,
Department of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
raw_author_name: Adam S L Graefe
raw_affiliation_strings: Berlin Institute of Health at Charité–Universitätsmedizin Berlin , Berlin 10999 ,
Berlin Institute of Health at Charité - Universitätsmedizin Berlin , Berlin 10999 ,
raw_author_name: Harshad Hegde
raw_affiliation_strings: GSK , San Francisco, CA 94080 ,
GSK, San Francisco, CA 94080, USA
raw_author_name: A J Ireland
raw_affiliation_strings: Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory , Berkeley, CA 94720 ,
Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
raw_author_name: Julius O B Jacobsen
raw_affiliation_strings: William Harvey Research Institute, Queen Mary University of London , London EC1M 6BQ ,
William Harvey Research Institute, Queen Mary University of London, London EC1M 6BQ, United Kingdom
raw_author_name: Madan Krishnamurthy
raw_affiliation_strings: University of North Carolina at Chapel Hill Department of Genetics, , Chapel Hill, NC 27599 ,
Department of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
raw_author_name: Carlo Kroll
raw_affiliation_strings: University of North Carolina at Chapel Hill Department of Genetics, , Chapel Hill, NC 27599 ,
Department of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
raw_author_name: David Linke
raw_affiliation_strings: Reaction Engineering & Catalyst Development, Leibniz Institute for Catalysis (LIKAT) , Rostock 18059 ,
Reaction Engineering & Catalyst Development, Leibniz Institute for Catalysis (LIKAT), Rostock, 18059, Germany
raw_author_name: Ryan Ly
raw_affiliation_strings: Scientific Data Division, Lawrence Berkeley National Laboratory , Berkeley, CA 94720 ,
Scientific Data Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
raw_author_name: Nicolas Matentzoglu
raw_affiliation_strings: Semanticly , Athens 10563 ,
Semanticly, Athens, 10563, Greece
raw_author_name: James A Overton
raw_affiliation_strings: Knocean , Toronto, Ontario M6P 2T3 ,
Knocean Inc., Toronto, Ontario M6P 2T3, Canada
raw_author_name: Jonny L Saunders
raw_affiliation_strings: UCLA Department of Neurology, , Los Angeles, CA 90095 ,
Department of Neurology, UCLA, Los Angeles, CA 90095, USA
raw_author_name: Deepak R Unni
raw_affiliation_strings: SIB Swiss Institute of Bioinformatics Personalized Health Informatics Group, , Basel 4051 ,
Personalized Health Informatics Group, SIB Swiss Institute of Bioinformatics, Basel 4051, Switzerland
raw_author_name: Gaurav Vaidya
raw_affiliation_strings: Renaissance Computing Institute, University of North Carolina at Chapel Hill , Chapel Hill, NC 27517 ,
Renaissance Computing Institute, University of North Carolina at Chapel Hill, Chapel Hill, NC 27517, USA
raw_author_name: Wouter-Michiel A M Vierdag
raw_affiliation_strings: European Molecular Biology Laboratory Genome Biology Unit, , Heidelberg, Baden-Württemberg 69117 ,
Genome Biology Unit, European Molecular Biology Laboratory , Heidelberg, Baden-Württemberg 69117 ,
raw_author_name: LinkML Community Contributors
raw_affiliation_strings: Scientific Data Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
raw_author_name: Richard M Bruskiewich
raw_affiliation_strings: Schools of Medicine, Public Health, and Nursing, Johns Hopkins University, Baltimore, MD 21287, USA
raw_author_name: Seth Carbon
raw_affiliation_strings: Department of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
raw_author_name: Eric Cavanna
raw_affiliation_strings: Department of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
raw_author_name: John-Marc Chandonia
raw_affiliation_strings: Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
raw_author_name: Shreyas Cholia
raw_author_name: Ben Dichter
raw_author_name: Emiley A Eloe-Fadrosh
raw_author_name: Vincent Emonet
raw_author_name: Shahim Essaid
raw_author_name: James A Fellows Yates
raw_author_name: Joseph Flack
raw_author_name: Satrajit S , Goutte-Gattat, Damien Ghosh
raw_author_name: Dorota Jarecka
raw_author_name: Dazhi Jiao
raw_author_name: Marcin P Joachimiak
raw_author_name: Vlad Korolev
raw_author_name: Volodymyr Lapkin
raw_author_name: Noel McLoughlin
raw_author_name: Sierra D Miller
raw_author_name: Michael Milton
raw_author_name: Josh Moore
raw_author_name: Moni Munoz-Torres
raw_author_name: B Nolan Nichols
raw_author_name: Justin T Reese
raw_author_name: Victoria Savage
raw_author_name: Philip Stroemert
raw_author_name: Jeremy Teoh
raw_author_name: Anne Thessen
raw_author_name: Isaac To
raw_author_name: Puja Trivedi
raw_author_name: Vincent Vialard
raw_author_name: Trish Whetzel
raw_author_name: Oliver Ruebel
raw_affiliation_strings: Scientific Data Division, Lawrence Berkeley National Laboratory , Berkeley, CA 94720 ,
raw_author_name: Christopher G Chute
raw_affiliation_strings: Johns Hopkins University Schools of Medicine, Public Health, and Nursing, , Baltimore, MD 21287 ,
raw_author_name: Matthew H Brush
raw_affiliation_strings: University of North Carolina at Chapel Hill Department of Genetics, , Chapel Hill, NC 27599 ,
raw_author_name: Melissa A Haendel
raw_affiliation_strings: University of North Carolina at Chapel Hill Department of Genetics, , Chapel Hill, NC 27599 ,
raw_author_name: Christopher J Mungall
raw_affiliation_strings: Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory , Berkeley, CA 94720 ,