LabID-base/OpenAlex-Afillation huggingface dataset:
Genetic Analysis of F1 Cluster Phages that Infect <i>Mycobacterium smegmatis</i> Identifies Two Distinct Holin-Like Proteins that Regulate the Host Lysis Event
Year: 2025
Type: article
Topic: Bacteriophages and microbial interactions
Authors and affiliations:
raw_author_name: Richard S. Pollenz
raw_affiliation_strings: University of South Florida Tampa Campus: University of South Florida;
University of South Florida Tampa Campus: University of South Florida
raw_author_name: Kira Ruiz-Houston
raw_affiliation_strings: University of Wisconsin-Madison
raw_author_name: Wynter Dean
raw_affiliation_strings: University of South Florida Tampa Campus: University of South Florida;
University of South Florida Tampa Campus: University of South Florida
raw_author_name: Loc Nguyen
raw_affiliation_strings: University of South Florida Tampa Campus: University of South Florida;
University of South Florida Tampa Campus: University of South Florida
Plasmid copy number affects the DNA methylation-driven expression dynamics of the <i>Cfr</i> BI restriction-modification system and impacts phage restriction
Year: 2025
Type: article
Topic: Bacterial Genetics and Biotechnology
Authors and affiliations:
raw_author_name: Johannes Gibhardt
raw_affiliation_strings: FG 190y JRG Microbial Processes of Nitrogen Transformation, Institute of Biology, University of Hohenheim, Stuttgart, 70599, Germany
Peter the Great St. Petersburg Polytechnic University, Saint Petersburg, 195251, Russia
FG 90y JRG Microbial Processes of Nitrogen Transformation, Institute of Biology, University of Hohenheim, Stuttgart, 70599, Germany
Peter the Great St. Petersburg Polytechnic University, Saint Petersburg, 19551, Russia
raw_author_name: Trung Duc Hoang
raw_affiliation_strings: FG 190y JRG Microbial Processes of Nitrogen Transformation, Institute of Biology, University of Hohenheim, Stuttgart, 70599, Germany
FG 90y JRG Microbial Processes of Nitrogen Transformation, Institute of Biology, University of Hohenheim, Stuttgart, 70599, Germany
raw_author_name: Konstantin Severinov
raw_affiliation_strings: Peter the Great St. Petersburg Polytechnic University, Saint Petersburg, 195251, Russia
Waksman Institute for Microbiology, Rutgers, State University of New Jersey, Piscataway, New Jersey 08854, USA
Peter the Great St. Petersburg Polytechnic University, Saint Petersburg, 19551, Russia
raw_author_name: Mikhail A. Khodorkovskii
raw_affiliation_strings: Peter the Great St. Petersburg Polytechnic University, Saint Petersburg, 195251, Russia
Peter the Great St. Petersburg Polytechnic University, Saint Petersburg, 19551, Russia
raw_author_name: Natalia E. Morozova
raw_affiliation_strings: Peter the Great St. Petersburg Polytechnic University, Saint Petersburg, 195251, Russia
Peter the Great St. Petersburg Polytechnic University, Saint Petersburg, 19551, Russia
Characterizing and mitigating confounding by unreplicated evolutionary events in phylogenetic regression
Year: 2025
Type: article
Language: en
Topic: Evolution and Paleontology Studies
Authors and affiliations:
raw_author_name: Qifan Wang
raw_affiliation_strings: Cornell University;
Cornell University
raw_author_name: Michael D. Edge
raw_affiliation_strings: University of Southern California
raw_author_name: Joshua G. Schraiber
raw_affiliation_strings: University of Southern California
raw_author_name: Matt Pennell
raw_affiliation_strings: Cornell University;
Cornell University
Sequence-context-aware decoding enables robust reconstruction of protein dynamics from crystallographic B-factors
Year: 2025
Type: article
Topic: Protein Structure and Dynamics
Authors and affiliations:
raw_author_name: Yiquan Wang
raw_affiliation_strings: College of Mathematics and System Science, Xinjiang University, Urumqi, Xinjiang, China
Shenzhen X-Institute, Shenzhen, China
Xinjiang Key Laboratory of Biological Resources and Genetic Engineering, College of Life Science and Technology, Xinjiang University, Urumqi, Xinjiang, China
Xinjiang University
raw_author_name: Minnuo Cai
raw_affiliation_strings: Shenzhen X-Institute, Shenzhen, China
Xinjiang Key Laboratory of Biological Resources and Genetic Engineering, College of Life Science and Technology, Xinjiang University, Urumqi, Xinjiang, China
Xinjiang University
raw_author_name: Yahui Ma
raw_affiliation_strings: Xinjiang Key Laboratory of Biological Resources and Genetic Engineering, College of Life Science and Technology, Xinjiang University, Urumqi, Xinjiang, China
Xinjiang University
raw_author_name: Kai Wei
raw_affiliation_strings: Xinjiang Key Laboratory of Biological Resources and Genetic Engineering, College of Life Science and Technology, Xinjiang University, Urumqi, Xinjiang, China
Xinjiang University
Adherence to Mediterranean Diet in Children and Adolescents With Obesity and Association With Anthropometrics as well as Cardiometabolic Risk Factors
Year: 2025
Type: preprint
Topic: Nutritional Studies and Diet
Authors and affiliations:
raw_author_name: Susanne Kröber
raw_affiliation_strings: University Medicine of Halle
raw_author_name: Marlene Rechtsteiner
raw_affiliation_strings: University Medicine of Halle
raw_author_name: Leah Tomerius
raw_affiliation_strings: University Medicine of Halle
raw_author_name: Dinet Ahmed
raw_affiliation_strings: University Medicine of Halle
raw_author_name: Lorenz Greifoner
raw_affiliation_strings: University Medicine of Halle
raw_author_name: Andreas Wienke
raw_affiliation_strings: Medical Faculty of the Martin Luther University Halle-Wittenberg
raw_author_name: Paulo J. Oliveira
raw_affiliation_strings: University of Coimbra
raw_author_name: Susann Weihrauch-Blüher
raw_affiliation_strings: University Medicine of Halle
An optimized protocol for <i>Candida albicans</i> infection in <i>Schmidtea mediterranea</i> to study fungal pathogenesis and host defense
Year: 2025
Type: article
Language: en
Topic: Planarian Biology and Electrostimulation
Authors and affiliations:
raw_author_name: Nora M. Shamoon
raw_affiliation_strings: University of California, Merced
raw_author_name: Beryl N. Arinda
raw_affiliation_strings: University of California, Merced
raw_author_name: Simriya Sandhu
raw_affiliation_strings: University of California, Merced
raw_author_name: Deepika Gunasekaran
raw_affiliation_strings: University of California, Merced
raw_author_name: Néstor J. Oviedo
raw_affiliation_strings: University of California, Merced
raw_author_name: Clarissa J. Nobile
raw_affiliation_strings: University of California, Merced
LARP1 integrates MYC and mTOR signaling to enable anabolic growth during tumor initiation
Year: 2025
Type: article
Topic: RNA Research and Splicing
Authors and affiliations:
raw_author_name: Pedro Fuentes
raw_affiliation_strings: Bellvitge Biomedical Research Institute (IDIBELL);
Bellvitge Biomedical Research Institute (IDIBELL)
raw_author_name: Flavia Iannizzotto
raw_affiliation_strings: Bellvitge Biomedical Research Institute (IDIBELL);
Bellvitge Biomedical Research Institute (IDIBELL)
raw_author_name: Elisa Battaglia
raw_affiliation_strings: Bellvitge Biomedical Research Institute (IDIBELL);
Bellvitge Biomedical Research Institute (IDIBELL)
raw_author_name: Chiara Balzamo
raw_affiliation_strings: Bellvitge Biomedical Research Institute (IDIBELL), University of Naples "Federico II";
Bellvitge Biomedical Research Institute (IDIBELL), University of Naples "Federico II"
raw_author_name: Carla Tola
raw_affiliation_strings: Bellvitge Biomedical Research Institute (IDIBELL);
Bellvitge Biomedical Research Institute (IDIBELL)
raw_author_name: Berta Forcada
raw_affiliation_strings: Bellvitge Biomedical Research Institute (IDIBELL);
Bellvitge Biomedical Research Institute (IDIBELL)
raw_author_name: Pau Bosch-i-Crespo
raw_affiliation_strings: Bellvitge Biomedical Research Institute (IDIBELL);
Bellvitge Biomedical Research Institute (IDIBELL)
raw_author_name: Brandon E. Frank
raw_affiliation_strings: Bellvitge Biomedical Research Institute (IDIBELL);
Bellvitge Biomedical Research Institute (IDIBELL)
raw_author_name: Francisco D. Moron-Duran
raw_affiliation_strings: Bellvitge Biomedical Research Institute (IDIBELL);
Bellvitge Biomedical Research Institute (IDIBELL)
raw_author_name: Carolina Martinez- Herraez
raw_affiliation_strings: Bellvitge Biomedical Research Institute (IDIBELL);
Bellvitge Biomedical Research Institute (IDIBELL)
raw_author_name: Albert Tauler
raw_affiliation_strings: Bellvitge Biomedical Research Institute (IDIBELL), Universitat de Barcelona;
Bellvitge Biomedical Research Institute (IDIBELL), Universitat de Barcelona
raw_author_name: Cristina Santos
raw_affiliation_strings: Bellvitge Biomedical Research Institute (IDIBELL), Catalan Institute of Oncology (ICO)
raw_author_name: Ramon Salazar
raw_affiliation_strings: Bellvitge Biomedical Research Institute (IDIBELL), Catalan Institute of Oncology (ICO)
raw_author_name: Antonio Gentilella
raw_affiliation_strings: Bellvitge Biomedical Research Institute (IDIBELL), Universitat de Barcelona;
Bellvitge Biomedical Research Institute (IDIBELL), Universitat de Barcelona
Subspace clustering identifies transcriptome constraints determining cell type identity
Year: 2025
Type: article
Topic: Single-cell and spatial transcriptomics
Authors and affiliations:
raw_author_name: Angela Huang
raw_affiliation_strings: Department of Computer and Information Science, University of Pennsylvania, Philadelphia, PA, USA
University of Pennsylvania
raw_author_name: Junhyong Kim
raw_affiliation_strings: Department of Biology, University of Pennsylvania, Philadelphia, PA, USA
University of Pennsylvania
Molecular basis of high-torque transmission of the <i>Vibrio</i> polar flagellar motor
Year: 2025
Type: article
Topic: Bacterial Genetics and Biotechnology
Authors and affiliations:
raw_author_name: Ling Zhang
raw_affiliation_strings: Zhejiang University;
Zhejiang University
raw_author_name: Jiaxing Tan
raw_affiliation_strings: Zhejiang University;
Zhejiang University
raw_author_name: Xuemin Duan
raw_affiliation_strings: Zhejiang University;
Zhejiang University
raw_author_name: Xiaofei Wang
raw_affiliation_strings: Zhejiang University;
Zhejiang University
raw_author_name: Michio Homma
raw_affiliation_strings: Nagoya University
raw_author_name: Seiji Kojima
raw_affiliation_strings: Nagoya University
raw_author_name: Yan Zhou
raw_affiliation_strings: Zhejiang University;
Zhejiang University
raw_author_name: Yongqun Zhu
raw_affiliation_strings: Zhejiang University;
Zhejiang University
The regenerative potential of adult <i>Nestin+</i> cerebellar astroglia is limited compared to in neonates
Year: 2025
Type: preprint
Language: en
Topic: Neurogenesis and neuroplasticity mechanisms
Authors and affiliations:
raw_author_name: N. Sumru Bayin
raw_affiliation_strings: Department of Physiology, Development and Neuroscience, University of Cambridge, Cambridge, UK
Gurdon Institute, University of Cambridge, Cambridge, UK
raw_author_name: Daniel N. Stephen
raw_affiliation_strings: Developmental Biology Program, Sloan Kettering Institute, New York, NY, USA
raw_author_name: Richard Koche
raw_affiliation_strings: Center for Epigenetics Research, Memorial Sloan Kettering Cancer Center, New York, NY
raw_author_name: Alexandra L. Joyner
raw_affiliation_strings: Biochemistry, Cell and Molecular Biology Program and Neuroscience Program, Weill Cornell Graduate School of Medical Sciences, New York, NY, USA
Developmental Biology Program, Sloan Kettering Institute, New York, NY, USA
Barley C2-Domain Abscisic Acid-Related protein CARa supports susceptibility to <i>Blumeria hordei</i> and localizes to the extrahaustorial membrane
Year: 2025
Type: article
Topic: Fungal and yeast genetics research
Authors and affiliations:
raw_author_name: Mariem Bradai
raw_affiliation_strings: Chair of Phytopathology, TUM School of Life Sciences, Technical University of Munich
raw_author_name: Christopher McCollum
raw_affiliation_strings: Chair of Phytopathology, TUM School of Life Sciences, Technical University of Munich
raw_author_name: Ralph Hückelhoven
raw_affiliation_strings: Chair of Phytopathology, TUM School of Life Sciences, Technical University of Munich
Energetic Constraints in the Enzymatic Depolymerization of Crystalline PET
Year: 2025
Type: article
Topic: Microplastics and Plastic Pollution
Authors and affiliations:
raw_author_name: Ania Di Pede-Mattatelli
raw_affiliation_strings: Institute of Marine Sciences, Spanish National Research Council (ICM-CSIC);
Institute of Marine Sciences, Spanish National Research Council (ICM-CSIC)
raw_author_name: Miguel A. Maria Solano
raw_affiliation_strings: Institute of Marine Sciences, Spanish National Research Council (ICM-CSIC);
Institute of Marine Sciences, Spanish National Research Council (ICM-CSIC)
raw_author_name: Oleksandr Haisha
raw_affiliation_strings: Institute of Marine Sciences, Spanish National Research Council (ICM-CSIC);
Institute of Marine Sciences, Spanish National Research Council (ICM-CSIC)
raw_author_name: Francesco Colizzi
raw_affiliation_strings: Institute for Advanced Chemistry of Catalonia, Spanish National Research Council (IQAC-CSIC) ; Institute of Marine Sciences, Spanish National Research Council (ICM-CSIC)
Institute of Marine Sciences, Spanish National Research Council (ICM-CSIC)
D1R- and D4R-Dependent Regulation of Retinal Light Adaptation in Diabetes
Year: 2025
Type: article
Topic: Retinal Development and Disorders
Authors and affiliations:
raw_author_name: David Umbertus
raw_affiliation_strings: University of Arizona
raw_author_name: Angela MacIsaac
raw_affiliation_strings: University of Arizona
raw_author_name: Erika D. Eggers
raw_affiliation_strings: University of Arizona
Inner-ear delivery of AAV2-retro robustly labels lateral olivocochlear efferents but results in off-target transfection in the contralateral cochlea and the brain
Year: 2025
Type: article
Language: en
Topic: Hearing, Cochlea, Tinnitus, Genetics
Authors and affiliations:
raw_author_name: Mahmoud Khalil
raw_affiliation_strings: University of Pittsburgh
raw_author_name: Mikayla Bisignani
raw_affiliation_strings: University of Pittsburgh
raw_author_name: Karl Kandler
raw_affiliation_strings: University of Pittsburgh
<i>Il33</i> expressing cDC2s promote expansion of ILC2s and eosinophilia in fungal airway inflammation in male mice
Year: 2025
Type: article
Topic: IL-33, ST2, and ILC Pathways
Authors and affiliations:
raw_author_name: Lisa-Marie Graf
raw_affiliation_strings: Department of Infection Biology, University Hospital Erlangen and Friedrich-Alexander-Universität Erlangen-Nürnberg, 91054 Erlangen, Germany
Department of Infection Biology, University Hospital Erlangen and Friedrich-Alexander-Universität Erlangen-Nürnberg, 9054 Erlangen, Germany
raw_author_name: Daniel Radtke
raw_affiliation_strings: Department of Infection Biology, University Hospital Erlangen and Friedrich-Alexander-Universität Erlangen-Nürnberg, 91054 Erlangen, Germany
Department of Infection Biology, University Hospital Erlangen and Friedrich-Alexander-Universität Erlangen-Nürnberg, 9054 Erlangen, Germany
raw_author_name: Andreas Ruhl
raw_affiliation_strings: Department of Infection Biology, University Hospital Erlangen and Friedrich-Alexander-Universität Erlangen-Nürnberg, 91054 Erlangen, Germany
Department of Infection Biology, University Hospital Erlangen and Friedrich-Alexander-Universität Erlangen-Nürnberg, 9054 Erlangen, Germany
raw_author_name: Kirstin Castiglione
raw_affiliation_strings: Department of Infection Biology, University Hospital Erlangen and Friedrich-Alexander-Universität Erlangen-Nürnberg, 91054 Erlangen, Germany
Department of Infection Biology, University Hospital Erlangen and Friedrich-Alexander-Universität Erlangen-Nürnberg, 9054 Erlangen, Germany
raw_author_name: Stefan Wirtz
raw_affiliation_strings: Medical Department 1, University Hospital Erlangen and Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany
raw_author_name: Sven Krappmann
raw_affiliation_strings: Institute of Clinical Microbiology, Immunology and Hygiene, University Hospital Erlangen and Friedrich-Alexander-Universität Erlangen-Nürnberg, Germany
raw_author_name: Barbara U. Schraml
raw_affiliation_strings: Institute for Immunology, Biomedical Center Munich, Faculty of Medicine, Ludwig-Maximilians-Universität in Munich, Planegg-Martinsried 82152, Germany
raw_author_name: David Voehringer
raw_affiliation_strings: Department of Infection Biology, University Hospital Erlangen and Friedrich-Alexander-Universität Erlangen-Nürnberg, 91054 Erlangen, Germany
Department of Infection Biology, University Hospital Erlangen and Friedrich-Alexander-Universität Erlangen-Nürnberg, 9054 Erlangen, Germany
The human cytomegalovirus chemokine binding protein UL22A is necessary for efficient reactivation from latency in CD34 <sup>+</sup> hematopoietic progenitor cells and humanized mice
Year: 2025
Type: article
Language: en
Topic: Cytomegalovirus and herpesvirus research
Authors and affiliations:
raw_author_name: Rebekah L Turner
raw_affiliation_strings: Vaccine and Gene Therapy Institute, Oregon Health & Science University, Beaverton, OR 97006
raw_author_name: Nicole L Diggins
raw_affiliation_strings: Vaccine and Gene Therapy Institute, Oregon Health & Science University, Beaverton, OR 97006
raw_author_name: Luke Slind
raw_affiliation_strings: Vaccine and Gene Therapy Institute, Oregon Health & Science University, Beaverton, OR 97006
raw_author_name: Jennifer Mitchell
raw_affiliation_strings: Vaccine and Gene Therapy Institute, Oregon Health & Science University, Beaverton, OR 97006
raw_author_name: Andrew H Pham
raw_affiliation_strings: Vaccine and Gene Therapy Institute, Oregon Health & Science University, Beaverton, OR 97006
raw_author_name: Christopher J Parkins
raw_affiliation_strings: Vaccine and Gene Therapy Institute, Oregon Health & Science University, Beaverton, OR 97006
raw_author_name: Wilma Perez
raw_affiliation_strings: Vaccine and Gene Therapy Institute, Oregon Health & Science University, Beaverton, OR 97006
raw_author_name: Samuel Medica
raw_affiliation_strings: Vaccine and Gene Therapy Institute, Oregon Health & Science University, Beaverton, OR 97006
raw_author_name: Michael Denton
raw_affiliation_strings: Vaccine and Gene Therapy Institute, Oregon Health & Science University, Beaverton, OR 97006
raw_author_name: Takeshi F Andoh
raw_affiliation_strings: Vaccine and Gene Therapy Institute, Oregon Health & Science University, Beaverton, OR 97006
raw_author_name: Gabriela M Webb
raw_affiliation_strings: Division of Pathobiology and Immunology, Oregon National Primate Research Center, Beaverton, OR 97006
raw_author_name: Daniel Andrade-Vera
raw_affiliation_strings: Vaccine and Gene Therapy Institute, Oregon Health & Science University, Beaverton, OR 97006
raw_author_name: Daniel N Streblow
raw_affiliation_strings: Division of Pathobiology and Immunology, Oregon National Primate Research Center, Beaverton, OR 97006
Vaccine and Gene Therapy Institute, Oregon Health & Science University, Beaverton, OR 97006
raw_author_name: Patrizia Caposio
raw_affiliation_strings: Vaccine and Gene Therapy Institute, Oregon Health & Science University, Beaverton, OR 97006
raw_author_name: Meaghan H Hancock
raw_affiliation_strings: Vaccine and Gene Therapy Institute, Oregon Health & Science University, Beaverton, OR 97006
OT-Curtains: an approach for studying protein interactions with DNA-ends using optical tweezers and confocal fluorescence microscopy
Year: 2025
Type: article
Topic: Diffusion and Search Dynamics
Authors and affiliations:
raw_author_name: Sara De Bragança
raw_affiliation_strings: National Center of Biotechnology (Spanish National Research Council);
National Center of Biotechnology (Spanish National Research Council)
raw_author_name: Clara Aicart-Ramos
raw_affiliation_strings: National Center of Biotechnology (Spanish National Research Council);
National Center of Biotechnology (Spanish National Research Council)
raw_author_name: Ángel Rivera-Calzada
raw_affiliation_strings: Spanish National Cancer Research Center (CNIO);
National Center of Biotechnology (Spanish National Research Council)
raw_author_name: Raquel Arribas-Bosacoma
raw_affiliation_strings: University of Edinburgh;
Spanish National Cancer Research Center (CNIO)
raw_author_name: Mark S. Dillingham
raw_affiliation_strings: University of Bristol;
University of Edinburgh
raw_author_name: Oscar Llorca
raw_affiliation_strings: Spanish National Cancer Research Center, CNIO. Madrid. Spain
University of Bristol
raw_author_name: Fernando Moreno-Herrero
raw_affiliation_strings: National Center of Biotechnology (Spanish National Research Council);
Spanish National Cancer Research Center, CNIO. Madrid. Spain
Arsenic Trioxide Underpins Delayed Neuroinflammation and Impaired Synaptic Integrity involving Integrative Stress Response Signaling
Year: 2025
Type: article
Language: en
Topic: Retinoids in leukemia and cellular processes
Authors and affiliations:
raw_author_name: Jasim Khan
raw_affiliation_strings: UAB Research Centre of Excellence in Arsenicals, Department of Dermatology, School of Medicine, University of Alabama at Birmingham, Birmingham, AL, 35294, USA
raw_author_name: Sazzad Khan
raw_affiliation_strings: Department of Neurology, College of Medicine, University of Tennessee Health Science Center, Memphis, TN, 38163, USA
raw_author_name: Himanshi Singh
raw_affiliation_strings: Department of Neurology, College of Medicine, University of Tennessee Health Science Center, Memphis, TN, 38163, USA
raw_author_name: Jianfeng Xiao
raw_affiliation_strings: Department of Neurology, College of Medicine, University of Tennessee Health Science Center, Memphis, TN, 38163, USA
raw_author_name: Daniel Johnson
raw_affiliation_strings: Molecular Bioinformatics Core, Translational Science Research Building, Memphis, TN 38163
Molecular Bioinformatics Core, Translational Science Research Building, Memphis, TN 816
raw_author_name: Mohammad Athar
raw_affiliation_strings: UAB Research Centre of Excellence in Arsenicals, Department of Dermatology, School of Medicine, University of Alabama at Birmingham, Birmingham, AL, 35294, USA
raw_author_name: Mohammad Moshahid Khan
raw_affiliation_strings: Center for Muscle, Metabolism and Neuropathology, Division of Regenerative and Rehabilitation Sciences, College of Health Professions, University of Tennessee Health Science Center, Memphis, TN, USA
Department of Neurology, College of Medicine, University of Tennessee Health Science Center, Memphis, TN, 38163, USA
Neuroscience Institute, University of Tennessee Health Science Center, Memphis, TN, USA
Identifying Effective Cryoprotectant Agents for Emerging Bacterial Model Species
Year: 2025
Type: article
Topic: Entomopathogenic Microorganisms in Pest Control
Authors and affiliations:
raw_author_name: Ruth Wright
raw_affiliation_strings: Department of Biological Sciences, The University of North Carolina at Charlotte, Charlotte, NC, 28223
raw_author_name: Bhuwan Abbot
raw_affiliation_strings: Department of Biological Sciences, The University of North Carolina at Charlotte, Charlotte, NC, 28223
raw_author_name: Taylor Yonemura
raw_affiliation_strings: Department of Biological Sciences, The University of North Carolina at Charlotte, Charlotte, NC, 28223
raw_author_name: Morgan Carter
raw_affiliation_strings: CIPHER, The University of North Carolina at Charlotte, Charlotte, NC, 28223
Department of Biological Sciences, The University of North Carolina at Charlotte, Charlotte, NC, 28223