ViMOP: a user-friendly and field-applicable pipeline for untargeted viral genome nanopore sequencing
Year: 2025
Type: article
Language: en
Topic: Genomics and Phylogenetic Studies
Authors and affiliations:
raw_author_name: Nils Peter Petersen
raw_affiliation_strings: Bernhard Nocht Institute for Tropical Medicine (BNITM) , 20359 Hamburg,
German Center for Infection Research (DZIF), Partner Site Hamburg–Lübeck–Borstel–Riems , 20251 Hamburg,
raw_author_name: Mia Le
raw_affiliation_strings: Bernhard Nocht Institute for Tropical Medicine (BNITM) , 20359 Hamburg,
German Center for Infection Research (DZIF), Partner Site Hamburg–Lübeck–Borstel–Riems , 20251 Hamburg,
Institute for Computational Systems Biomedicine, University of Hamburg , 22761 Hamburg,
raw_author_name: Annick Renevey
raw_affiliation_strings: Bernhard Nocht Institute for Tropical Medicine (BNITM) , 20359 Hamburg,
German Center for Infection Research (DZIF), Partner Site Hamburg–Lübeck–Borstel–Riems , 20251 Hamburg,
raw_author_name: Ehizojie Emua
raw_affiliation_strings: Viral and Emergent Pathogens Control and Research, Irrua Specialist Teaching Hospital , 310115 Irrua, Edo State,
raw_author_name: Sarah Ryter
raw_affiliation_strings: Bernhard Nocht Institute for Tropical Medicine (BNITM) , 20359 Hamburg,
German Center for Infection Research (DZIF), Partner Site Hamburg–Lübeck–Borstel–Riems , 20251 Hamburg,
raw_author_name: Giuditta Annibaldis
raw_affiliation_strings: Bernhard Nocht Institute for Tropical Medicine (BNITM) , 20359 Hamburg,
German Center for Infection Research (DZIF), Partner Site Hamburg–Lübeck–Borstel–Riems , 20251 Hamburg,
raw_author_name: Jacob Camara
raw_affiliation_strings: Virology Research Center/Laboratory of Viral Hemorrhagic Fevers , 001 Conakry, Guinea
raw_author_name: Sanaba Boumbaly
raw_affiliation_strings: Virology Research Center/Laboratory of Viral Hemorrhagic Fevers , 001 Conakry, Guinea
raw_author_name: Cyril Erameh
raw_affiliation_strings: Viral and Emergent Pathogens Control and Research, Irrua Specialist Teaching Hospital , 310115 Irrua, Edo State,
raw_author_name: Tanja Laske
raw_affiliation_strings: Institute for Computational Systems Biomedicine, University of Hamburg , 22761 Hamburg,
Leibniz Institute of Virology, Viral Systems Modeling , 20251 Hamburg,
raw_author_name: Jan Baumbach
raw_affiliation_strings: Department of Mathematics and Computer Science, Computational Biomedicine Lab, University of Southern Denmark , 5230 Odense,
Institute for Computational Systems Biomedicine, University of Hamburg , 22761 Hamburg,
raw_author_name: Philippe Lemey
raw_affiliation_strings: Department of Microbiology, Immunology and Transplantation, KU Leuven, Rega Institute , 3000 Leuven,
raw_author_name: Stephan Günther
raw_affiliation_strings: Bernhard Nocht Institute for Tropical Medicine (BNITM) , 20359 Hamburg,
German Center for Infection Research (DZIF), Partner Site Hamburg–Lübeck–Borstel–Riems , 20251 Hamburg,
raw_author_name: Sophie Duraffour
raw_affiliation_strings: Bernhard Nocht Institute for Tropical Medicine (BNITM) , 20359 Hamburg,
German Center for Infection Research (DZIF), Partner Site Hamburg–Lübeck–Borstel–Riems , 20251 Hamburg,
raw_author_name: Liana Eleni Kafetzopoulou
raw_affiliation_strings: Bernhard Nocht Institute for Tropical Medicine (BNITM) , 20359 Hamburg,
Department of Microbiology, Immunology and Transplantation, KU Leuven, Rega Institute , 3000 Leuven,
German Center for Infection Research (DZIF), Partner Site Hamburg–Lübeck–Borstel–Riems , 20251 Hamburg,