SNAP: Streamlined Nextflow Analysis Pipeline for Immunoprecipitation-Based Epigenomic Profiling of Circulating Chromatin
Year: 2025
Type: article
Language: en
Topic: Cancer Genomics and Diagnostics
Authors and affiliations:
raw_author_name: Ze Zhang
raw_affiliation_strings: Center for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, Boston, MA, USA
Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA
Division of Population Sciences, Dana-Farber Cancer Institute, Boston, MA, USA
Harvard Medical School, Boston, MA, USA
Harvard T. H. Chan School of Public Health, Boston, MA, USA
raw_author_name: Paulo Da Silva Cordeiro
raw_affiliation_strings: Center for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, Boston, MA, USA
Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA
Division of Population Sciences, Dana-Farber Cancer Institute, Boston, MA, USA
Harvard Medical School, Boston, MA, USA
Universidade Federal do Ceará (UFC), Fortaleza, CE, Brazil
raw_author_name: Surya B. Chhetri
raw_affiliation_strings: Center for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, Boston, MA, USA
Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA
Division of Population Sciences, Dana-Farber Cancer Institute, Boston, MA, USA
Harvard Medical School, Boston, MA, USA
raw_author_name: Brad Fortunato
raw_affiliation_strings: Center for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, Boston, MA, USA
Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA
Division of Population Sciences, Dana-Farber Cancer Institute, Boston, MA, USA
raw_author_name: Zhenjie Jin
raw_affiliation_strings: Center for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, Boston, MA, USA
Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA
Division of Population Sciences, Dana-Farber Cancer Institute, Boston, MA, USA
raw_author_name: Razane El Hajj Chehade
raw_affiliation_strings: Center for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, Boston, MA, USA
Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA
Division of Population Sciences, Dana-Farber Cancer Institute, Boston, MA, USA
Harvard Medical School, Boston, MA, USA
raw_author_name: Karl Semaan
raw_affiliation_strings: Center for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, Boston, MA, USA
Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA
Division of Population Sciences, Dana-Farber Cancer Institute, Boston, MA, USA
Harvard Medical School, Boston, MA, USA
raw_author_name: Gunsagar Gulati
raw_affiliation_strings: Center for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, Boston, MA, USA
Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA
Division of Population Sciences, Dana-Farber Cancer Institute, Boston, MA, USA
Harvard Medical School, Boston, MA, USA
raw_author_name: Garyoung Gary Lee
raw_affiliation_strings: Center for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, Boston, MA, USA
Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA
Division of Population Sciences, Dana-Farber Cancer Institute, Boston, MA, USA
Harvard Medical School, Boston, MA, USA
raw_author_name: Christopher Hemauer
raw_affiliation_strings: Center for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, Boston, MA, USA
Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA
Division of Population Sciences, Dana-Farber Cancer Institute, Boston, MA, USA
Harvard Medical School, Boston, MA, USA
raw_author_name: Weiwei Bian
raw_affiliation_strings: Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA
Division of Population Sciences, Dana-Farber Cancer Institute, Boston, MA, USA
raw_author_name: Shahabeddin Sotudian
raw_affiliation_strings: Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA
Division of Population Sciences, Dana-Farber Cancer Institute, Boston, MA, USA
Harvard Medical School, Boston, MA, USA
raw_author_name: Ziwei Zhang
raw_affiliation_strings: Center for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, Boston, MA, USA
Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA
Division of Population Sciences, Dana-Farber Cancer Institute, Boston, MA, USA
Harvard Medical School, Boston, MA, USA
Harvard T. H. Chan School of Public Health, Boston, MA, USA
raw_author_name: David Osei-Hwedieh
raw_affiliation_strings: Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA
Department of Orthopaedic Surgery, Massachusetts General Hospital, Boston, MA, USA
Division of Population Sciences, Dana-Farber Cancer Institute, Boston, MA, USA
raw_author_name: Tanya E. Heim
raw_affiliation_strings: Musculoskeletal Oncology Tumor Registry, Department of Orthopaedic Surgery, University of Pittsburgh, Pittsburgh, PA, USA
raw_author_name: Corrie Painter
raw_affiliation_strings: Precede Biosciences, Boston, MA
raw_author_name: Rashad Nawfal
raw_affiliation_strings: Center for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, Boston, MA, USA
Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA
Harvard Medical School, Boston, MA, USA
raw_author_name: Marc Eid
raw_affiliation_strings: Center for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, Boston, MA, USA
Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA
Harvard Medical School, Boston, MA, USA
raw_author_name: Damien Vasseur
raw_affiliation_strings: Center for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, Boston, MA, USA
Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA
Harvard Medical School, Boston, MA, USA
raw_author_name: John Canniff
raw_affiliation_strings: Center for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, Boston, MA, USA
Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA
raw_author_name: Hunter Savignano
raw_affiliation_strings: Center for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, Boston, MA, USA
Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA
raw_author_name: Noa Phillips
raw_affiliation_strings: Center for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, Boston, MA, USA
Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA
raw_author_name: Ji-Heui Seo
raw_affiliation_strings: Center for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, Boston, MA, USA
Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA
raw_author_name: Kurt R. Weiss
raw_affiliation_strings: Musculoskeletal Oncology Tumor Registry, Department of Orthopaedic Surgery, University of Pittsburgh, Pittsburgh, PA, USA
raw_author_name: Matthew L. Freedman
raw_affiliation_strings: Center for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, Boston, MA, USA
Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA
Harvard Medical School, Boston, MA, USA
raw_author_name: Sylvan C. Baca
raw_affiliation_strings: Center for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, Boston, MA, USA
Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA
Division of Population Sciences, Dana-Farber Cancer Institute, Boston, MA, USA
Harvard Medical School, Boston, MA, USA