Bridging the dimensional gap from planar spatial transcriptomics to 3D cell atlases
Year: 2025
Type: article
Language: en
Topic: Single-cell and spatial transcriptomics
Authors and affiliations:
raw_author_name: Senlin Lin
raw_affiliation_strings: Center for Medical Research and Innovation, Shanghai Pudong Hospital, Fudan University Pudong Medical Center, Fudan University, Shanghai, China
Institute of Computing Technology, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Beijing, China
Institute of Science and Technology for Brain-Inspired Intelligence, MOE Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence, MOE Frontiers Center for Brain Science, Center for Integrative Spatial-Omics Research, Fudan University, Shanghai, China
raw_author_name: Zhikang Wang
raw_affiliation_strings: Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Monash University, Melbourne, Victoria, Australia
Center for Medical Research and Innovation, Shanghai Pudong Hospital, Fudan University Pudong Medical Center, Fudan University, Shanghai, China
Institute of Science and Technology for Brain-Inspired Intelligence, MOE Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence, MOE Frontiers Center for Brain Science, Center for Integrative Spatial-Omics Research, Fudan University, Shanghai, China
raw_author_name: Yan Cui
raw_affiliation_strings: Center for Medical Research and Innovation, Shanghai Pudong Hospital, Fudan University Pudong Medical Center, Fudan University, Shanghai, China
Institute of Science and Technology for Brain-Inspired Intelligence, MOE Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence, MOE Frontiers Center for Brain Science, Center for Integrative Spatial-Omics Research, Fudan University, Shanghai, China
raw_author_name: Qi Zou
raw_affiliation_strings: Center for Medical Research and Innovation, Shanghai Pudong Hospital, Fudan University Pudong Medical Center, Fudan University, Shanghai, China
Center of Intelligent Medicine, School of Control Science and Engineering, Shandong University, Jinan, China
Institute of Science and Technology for Brain-Inspired Intelligence, MOE Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence, MOE Frontiers Center for Brain Science, Center for Integrative Spatial-Omics Research, Fudan University, Shanghai, China
raw_author_name: Chuangyi Han
raw_affiliation_strings: Center for Medical Research and Innovation, Shanghai Pudong Hospital, Fudan University Pudong Medical Center, Fudan University, Shanghai, China
Institute of Science and Technology for Brain-Inspired Intelligence, MOE Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence, MOE Frontiers Center for Brain Science, Center for Integrative Spatial-Omics Research, Fudan University, Shanghai, China
raw_author_name: Rui Yan
raw_affiliation_strings: School of Biomedical Engineering, University of Science and Technology of China, Hefei, China
Suzhou Institute for Advance Research, University of Science and Technology of China, Suzhou, China
raw_author_name: Zhidong Yang
raw_affiliation_strings: Institute of Computing Technology, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Beijing, China
raw_author_name: Wei Zhang
raw_affiliation_strings: Center of Intelligent Medicine, School of Control Science and Engineering, Shandong University, Jinan, China
raw_author_name: Rui Gao
raw_affiliation_strings: Center of Intelligent Medicine, School of Control Science and Engineering, Shandong University, Jinan, China
raw_author_name: Jiangning Song
raw_affiliation_strings: Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Monash University, Melbourne, Victoria, Australia
raw_author_name: Michael Q. Zhang
raw_affiliation_strings: Department of Biological Sciences, Center for Systems Biology, The University of Texas, Richardson, TX, USA
raw_author_name: Hanchuan Peng
raw_affiliation_strings: Shanghai Academy of Natural Sciences, Fudan University, Shanghai, China
raw_author_name: Jintai Yu
raw_affiliation_strings: Department of Neurology and National Center for Neurological Disorders, Huashan Hospital, State Key Laboratory of Medical Neurobiology and MOE Frontiers Center for Brain Science, Shanghai Medical College, Fudan University, Shanghai, China
raw_author_name: Jianfeng Feng
raw_affiliation_strings: Institute of Science and Technology for Brain-Inspired Intelligence, MOE Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence, MOE Frontiers Center for Brain Science, Center for Integrative Spatial-Omics Research, Fudan University, Shanghai, China. jianfeng64@gmail.com
raw_author_name: Yi Zhao
raw_affiliation_strings: Institute of Computing Technology, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Beijing, China. biozy@ict.ac.cn
raw_author_name: Zhiyuan Yuan
raw_affiliation_strings: Center for Medical Research and Innovation, Shanghai Pudong Hospital, Fudan University Pudong Medical Center, Fudan University, Shanghai, China. zhiyuan@fudan.edu.cn
Institute of Science and Technology for Brain-Inspired Intelligence, MOE Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence, MOE Frontiers Center for Brain Science, Center for Integrative Spatial-Omics Research, Fudan University, Shanghai, China. zhiyuan@fudan.edu.cn