Reconstructing the three-dimensional architecture of extrachromosomal DNA with ec3D
Year: 2025
Type: article
Language: en
Topic: Genomics and Chromatin Dynamics
Authors and affiliations:
raw_author_name: Biswanath Chowdhury
raw_affiliation_strings: Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA, USA
New York Genome Center, New York, NY, USA
raw_author_name: Kaiyuan Zhu
raw_affiliation_strings: Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA, USA
raw_author_name: Chaohui Li
raw_affiliation_strings: Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA, USA
raw_author_name: Jessica Alsing
raw_affiliation_strings: Department of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, TX, USA
raw_author_name: Jens Luebeck
raw_affiliation_strings: Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA, USA
raw_author_name: Maria E. Stefanova
raw_affiliation_strings: Department of Pediatric Hematology and Oncology, Charité-Universitätsmedizin Berlin, Berlin, Germany
raw_author_name: Owen S. Chapman
raw_affiliation_strings: Department of Medicine, University of California San Diego, La Jolla, CA, USA
Department of Neuro-oncology, Institute of Brain Sciences, Nagoya City University Graduate School of Medical Sciences, Nagoya, Japan
Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA, USA
raw_author_name: Katerina Kraft
raw_affiliation_strings: Amgen Research, South San Francisco, CA, USA
Center for Personal Dynamic Regulomes, Stanford University, Stanford, CA, USA
Howard Hughes Medical Institute, Stanford University, Stanford, CA, USA
raw_author_name: Shu Zhang
raw_affiliation_strings: Center for Personal Dynamic Regulomes, Stanford University, Stanford, CA, USA
Department of Dermatology, Stanford University School of Medicine, Stanford, CA, USA
Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA
raw_author_name: Jun Yi Stanley Lim
raw_affiliation_strings: Children's Medical Center Research Institute, University of Texas Southwestern Medical Center, Dallas, TX, USA
raw_author_name: Yipeng Xie
raw_affiliation_strings: Children's Medical Center Research Institute, University of Texas Southwestern Medical Center, Dallas, TX, USA
raw_author_name: Yoon Jung Kim
raw_affiliation_strings: Children's Medical Center Research Institute, University of Texas Southwestern Medical Center, Dallas, TX, USA
raw_author_name: Sihan Wu
raw_affiliation_strings: Children's Medical Center Research Institute, University of Texas Southwestern Medical Center, Dallas, TX, USA
raw_author_name: Lukas Chavez
raw_affiliation_strings: Department of Medicine, University of California San Diego, La Jolla, CA, USA
Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA, USA
raw_author_name: Guy Nir
raw_affiliation_strings: Department of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, TX, USA
raw_author_name: Anton G. Henssen
raw_affiliation_strings: Berlin Institute of Health, Berlin, Germany
Children's Medical Center Research Institute, University of Texas Southwestern Medical Center, Dallas, TX, USA
Department of Pediatric Hematology and Oncology, Charité-Universitätsmedizin Berlin, Berlin, Germany
Experimental and Clinical Research Center, Max Delbrück Center for Molecular Medicine Charité-Universitätsmedizin Berlin, Berlin, Germany
raw_author_name: Paul S. Mischel
raw_affiliation_strings: Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA
Sarafan Chemistry, Engineering, and Medicine for Human Health (Sarafan ChEM-H), Stanford University, Stanford, CA, USA
raw_author_name: Howard Y. Chang
raw_affiliation_strings: Amgen Research, South San Francisco, CA, USA
Center for Personal Dynamic Regulomes, Stanford University, Stanford, CA, USA
Howard Hughes Medical Institute, Stanford University, Stanford, CA, USA
raw_author_name: Vineet Bafna
raw_affiliation_strings: Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA, USA. vbafna@ucsd.edu
Halıcıoğlu Data Science Institute, University of California San Diego, La Jolla, CA, USA. vbafna@ucsd.edu