The need for standardisation and improved open (meta)data practices in metaproteomics
Year: 2025
Type: article
Topic: Advanced Proteomics Techniques and Applications
Authors and affiliations:
raw_author_name: Tim Van Den Bossche
raw_affiliation_strings: Department of Biomolecular Medicine, Faculty of Medicine and Health Sciences, Ghent University, 9052 Ghent, Belgium
raw_author_name: Maximilian Wolf
raw_affiliation_strings: Multidimensional Omics Analyses group, Faculty of Technology, Bielefeld University, Universit¨atsstrasse 25, 33615 Bielefeld, Germany
raw_author_name: Jean Armengaud
raw_affiliation_strings: Université Paris-Saclay, CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), SPI, Bagnols-sur-Cèze, France
raw_author_name: Magnus Arntzen
raw_affiliation_strings: Faculty of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences (NMBU), P.O. Box 5003, N-1432 Ås, NORWAY
raw_author_name: Dirk Benndorf
raw_affiliation_strings: Applied Biosciences and Process Engineering, Anhalt University of Applied Sciences, Bernburger Straße 55, 06366 Köthen, Germany
raw_author_name: Daniel Figeys
raw_affiliation_strings: School of Pharmaceutical Sciences, Faculty of Medicine, University of Ottawa, Ottawa, Canada
raw_author_name: Lucia Grenga
raw_affiliation_strings: Université Paris-Saclay, CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), SPI, Bagnols-sur-Cèze, France
raw_author_name: Robert Hettich
raw_affiliation_strings: Biosciences Division, Oak Ridge National Laboratory, Oak Ridge
raw_author_name: Nithu Sara John
raw_affiliation_strings: European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK
raw_author_name: Pratik Jagtap
raw_affiliation_strings: Department of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, Minneapolis, MN 55455
raw_author_name: Nico Jehmlich
raw_affiliation_strings: Helmholtz Centre for Environmental Research GmbH - UFZ, Department of Molecular Toxicology, Permoserstraße 15, 04318 Leipzig, Germany
raw_author_name: Manuel Kleiner
raw_affiliation_strings: Department of Plant and Microbial Biology, North Carolina State University, Raleigh, NC, USA
raw_author_name: Benoit J. Kunath
raw_affiliation_strings: Multiomics Data Science Research Group, Department of Cancer Research, Luxembourg Institute of Health, 1445, Strassen, Luxembourg
raw_author_name: Leyuan Li
raw_affiliation_strings: State Key Laboratory of Medical Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing, 102206, China
raw_author_name: Mary Lipton
raw_affiliation_strings: Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, USA
raw_author_name: Bart Mesuere
raw_affiliation_strings: Department of Mathematics, Computer Science and Statistics, Ghent University, 9000 Ghent, Belgium
raw_author_name: Benjamin Neely
raw_affiliation_strings: National Institute of Standards and Technology - Charleston, Charleston, SC 29412, USA
raw_author_name: Zhibin Ning
raw_affiliation_strings: Faculty of Medicine, University of Ottawa
raw_author_name: Ane Laura Pedersen
raw_affiliation_strings: Nestlé Institute of Food Safety & Analytical Sciences, Nestlé Research, Lausanne, Switzerland
raw_author_name: Yasset Perez-Riverol
raw_affiliation_strings: European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK
raw_author_name: Jeena Rajan
raw_affiliation_strings: European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK
raw_author_name: Kay Schallert
raw_affiliation_strings: Leibniz-Institut für Analytische Wissenschaften – ISAS – e.V. Bunsen-Kirchhoff-Str. 11 | 44139 Dortmund, Germany
raw_author_name: Jana Seifert
raw_affiliation_strings: HoLMiR—Hohenheim Center for Livestock Microbiome Research, University of Hohenheim, Leonore-Blosser-Reisen Weg 3, 70593 Stuttgart, Germany
raw_author_name: Sergio Uzzau
raw_affiliation_strings: Department of Biomedical Sciences, University of Sassari, Sassari, Italy
raw_author_name: Pieter Verschaffelt
raw_affiliation_strings: CompOmics, VIB Center for Medical Biotechnology, VIB, Ghent, Belgium
Department of Biomolecular Medicine, Faculty of Medicine and Health Sciences, Ghent University, Ghent, Belgium
Department of Mathematics, Computer Science and Statistics, Ghent University, 9000 Ghent, Belgium
raw_author_name: Paul Wilmes
raw_affiliation_strings: Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Avenue des Hauts-Fourneaux, 7, Esch-sur-Alzette, L-4362, Luxembourg
raw_author_name: Juan Antonio Vizcaíno
raw_affiliation_strings: European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK
raw_author_name: Lennart Martens
raw_affiliation_strings: Department of Biomolecular Medicine, Faculty of Medicine and Health Sciences, Ghent University, 9052 Ghent, Belgium
raw_author_name: Robert Heyer
raw_affiliation_strings: Leibniz-Institut für Analytische Wissenschaften – ISAS – e.V. Bunsen-Kirchhoff-Str. 11 | 44139 Dortmund, Germany