The IGVF catalog—from genetic variation to function
Year: 2025
Type: article
Language: en
Topic: Single-cell and spatial transcriptomics
Authors and affiliations:
raw_author_name: Daofeng Li
raw_affiliation_strings: Department of Genetics, The Edison Family Center for Genome Sciences and Systems Biology, Washington University School of Medicine , St. Louis , MO 63110 ,
Department of Genetics, The Edison Family Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis,MO 63110, United States
raw_author_name: Shane Liu
raw_affiliation_strings: Department of Genetics, The Edison Family Center for Genome Sciences and Systems Biology, Washington University School of Medicine , St. Louis , MO 63110 ,
Department of Genetics, The Edison Family Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis,MO 63110, United States
raw_author_name: Pedro R Assis
raw_affiliation_strings: Department of Genetics, Stanford University , Stanford , CA 94305 ,
Department of Genetics, Stanford University, Stanford, CA 94305, United States
raw_author_name: Mingjie Li
raw_affiliation_strings: Department of Genetics, Stanford University , Stanford , CA 94305 ,
Department of Genetics, Stanford University, Stanford, CA 94305, United States
raw_author_name: Shengcheng Dong
raw_affiliation_strings: Department of Genetics, Stanford University , Stanford , CA 94305 ,
Department of Genetics, Stanford University, Stanford, CA 94305, United States
raw_author_name: Ian Whaling
raw_affiliation_strings: Department of Genetics, Stanford University , Stanford , CA 94305 ,
Department of Genetics, Stanford University, Stanford, CA 94305, United States
raw_author_name: Otto Jolanki
raw_affiliation_strings: Department of Genetics, Stanford University , Stanford , CA 94305 ,
Department of Genetics, Stanford University, Stanford, CA 94305, United States
raw_author_name: Meenakshi Kagda
raw_affiliation_strings: Department of Genetics, Stanford University , Stanford , CA 94305 ,
Department of Genetics, Stanford University, Stanford, CA 94305, United States
raw_author_name: Wenjin Zhang
raw_affiliation_strings: Department of Genetics, The Edison Family Center for Genome Sciences and Systems Biology, Washington University School of Medicine , St. Louis , MO 63110 ,
Department of Genetics, The Edison Family Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis,MO 63110, United States
raw_author_name: Juan F Macias-Velasco
raw_affiliation_strings: Department of Genetics, The Edison Family Center for Genome Sciences and Systems Biology, Washington University School of Medicine , St. Louis , MO 63110 ,
Department of Genetics, The Edison Family Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis,MO 63110, United States
raw_author_name: Tianjie Liu
raw_affiliation_strings: Department of Genetics, The Edison Family Center for Genome Sciences and Systems Biology, Washington University School of Medicine , St. Louis , MO 63110 ,
Department of Genetics, The Edison Family Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis,MO 63110, United States
raw_author_name: Sarah Cody
raw_affiliation_strings: McDonnell Genome Institute, Washington University School of Medicine , St. Louis , MO 63108 ,
McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO 63108, United States
raw_author_name: Lucinda Antonacci-Fulton
raw_affiliation_strings: McDonnell Genome Institute, Washington University School of Medicine , St. Louis , MO 63108 ,
McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO 63108, United States
raw_author_name: Yuanhao Huang
raw_affiliation_strings: Department of Computational Medicine and Bioinformatics, University of Michigan , Ann Arbor , MI 48109 ,
Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI 48109, United States
raw_author_name: Jie Liu
raw_affiliation_strings: Department of Computational Medicine and Bioinformatics, University of Michigan , Ann Arbor , MI 48109 ,
Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI 48109, United States
raw_author_name: Michael T Montgomery
raw_affiliation_strings: Department of Genetics, Stanford University , Stanford , CA 94305 ,
Department of Genetics, Stanford University, Stanford, CA 94305, United States
raw_author_name: Daniel Zeiberg
raw_affiliation_strings: Institute for Experiential AI, Northeastern University , Boston , MA 02115 ,
Institute for Experiential AI, Northeastern University, Boston, MA 02115, United States
raw_author_name: Shantanu Jain
raw_affiliation_strings: Institute for Experiential AI, Northeastern University , Boston , MA 02115 ,
Institute for Experiential AI, Northeastern University, Boston, MA 02115, United States
raw_author_name: Vikas Pejaver
raw_affiliation_strings: Institute for Genomic Health, Icahn School of Medicine at Mount Sinai, New York , NY 10029 ,
Institute for Genomic Health, Icahn School of Medicine at Mount Sinai, New York, NY 10029, United States
raw_author_name: Timothy Bergquist
raw_affiliation_strings: Institute for Genomic Health, Icahn School of Medicine at Mount Sinai, New York , NY 10029 ,
Institute for Genomic Health, Icahn School of Medicine at Mount Sinai, New York, NY 10029, United States
raw_author_name: Yile Chen
raw_affiliation_strings: Department of Biomedical Informatics and Medical Education, University of Washington , Seattle , WA 98195 ,
Department of Biomedical Informatics and Medical Education, University of Washington, Seattle, WA 98195, United States
raw_author_name: Predrag Radivojac
raw_affiliation_strings: Khoury College of Computer Sciences, Northeastern University , Boston , MA 02115 ,
Khoury College of Computer Sciences, Northeastern University, Boston, MA 02115, United States
raw_author_name: Charles A Gersbach
raw_affiliation_strings: Department of Biomedical Engineering, and Center for Advanced Genomic Technologies, Duke University , Durham , NC 27708 ,
Department of Biomedical Engineering, and Center for Advanced Genomic Technologies, Duke University, Durham, NC 27708, United States
raw_author_name: Rintsen N Sherpa
raw_affiliation_strings: Department of Computational Medicine and Bioinformatics, University of Michigan , Ann Arbor , MI 48109 ,
Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI 48109, United States
raw_author_name: Christopher P Castro
raw_affiliation_strings: Department of Computational Medicine and Bioinformatics, University of Michigan , Ann Arbor , MI 48109 ,
Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI 48109, United States
raw_author_name: Alan P Boyle
raw_affiliation_strings: Department of Computational Medicine and Bioinformatics, University of Michigan , Ann Arbor , MI 48109 ,
Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI 48109, United States
raw_author_name: Lea M Starita
raw_affiliation_strings: Department of Genome Sciences, University of Washington , Seattle , WA 98195 ,
Department of Genome Sciences, University of Washington, Seattle, WA 98195, United States
raw_author_name: Douglas M Fowler
raw_affiliation_strings: Department of Genome Sciences, University of Washington , Seattle , WA 98195 ,
Department of Genome Sciences, University of Washington, Seattle, WA 98195, United States
raw_author_name: Nadav Ahituv
raw_affiliation_strings: Department of Bioengineering and Therapeutic Sciences, Institute for Human Genetics, University of California San Francisco , San Francisco , CA 94158 ,
Department of Bioengineering and Therapeutic Sciences, Institute for Human Genetics, University of California San Francisco, San Francisco, CA 94158, United States
raw_author_name: Kushal K Dey
raw_affiliation_strings: Computational and Systems Biology Program, Memorial Sloan Kettering Cancer Center, New York , NY 10065 ,
Computational and Systems Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, United States
raw_author_name: William H Majoros
raw_affiliation_strings: Department of Biostatistics and Bioinformatics, Duke University Medical Center , Durham , NC 27710 ,
Department of Biostatistics and Bioinformatics, Duke University Medical Center, Durham, NC 27710, United States
raw_author_name: Timothy E Reddy
raw_affiliation_strings: Department of Biostatistics and Bioinformatics, Duke University Medical Center , Durham , NC 27710 ,
Department of Biostatistics and Bioinformatics, Duke University Medical Center, Durham, NC 27710, United States
raw_author_name: Mark Craven
raw_affiliation_strings: Department of Biostatistics and Medical Informatics, University of Wisconsin , Madison , WI 53706 ,
Department of Biostatistics and Medical Informatics, University of Wisconsin, Madison, WI 53706, United States
raw_author_name: Riya Sinha
raw_affiliation_strings: Department of Genetics, Stanford University , Stanford , CA 94305 ,
Department of Genetics, Stanford University, Stanford, CA 94305, United States
raw_author_name: Yuriy Sverchkov
raw_affiliation_strings: Department of Biostatistics and Medical Informatics, University of Wisconsin , Madison , WI 53706 ,
Department of Biostatistics and Medical Informatics, University of Wisconsin, Madison, WI 53706, United States
raw_author_name: Xiangmeng Cai
raw_affiliation_strings: Department of Genetics, Stanford University , Stanford , CA 94305 ,
Department of Genetics, Stanford University, Stanford, CA 94305, United States
raw_author_name: Mpathi Z Nzima
raw_affiliation_strings: Cecil H. and Ida Green Center for Reproductive Biology Sciences, University of Texas Southwestern Medical Center , Dallas , TX 75390 ,
Cecil H. and Ida Green Center for Reproductive Biology Sciences, University of Texas Southwestern Medical Center, Dallas, TX 75390, United States
raw_author_name: Michael A Calderwood
raw_affiliation_strings: Center for Cancer Systems Biology (CCSB) & Department of Cancer Biology, Dana–Farber Cancer Institute and Department of Genetics, Blavatnik Institute, Harvard Medical School , Boston, MA 02215 ,
raw_author_name: Joel Rozowsky
raw_affiliation_strings: Department of Molecular Biophysics and Biochemistry, Yale University , New Haven , CT 06520 ,
Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520, United States
raw_author_name: Mark Gerstein
raw_affiliation_strings: Department of Molecular Biophysics and Biochemistry, Yale University , New Haven , CT 06520 ,
Department of Statistics and Data Science, Yale University , New Haven , CT 06520 ,
Department of Statistics and Data Science, Yale University, New Haven, CT 06520, United States
raw_author_name: Jian Ma
raw_affiliation_strings: Ray and Stephanie Lane Computational Biology Department, School of Computer Science, Carnegie Mellon University , Pittsburgh , PA 15213 ,
Ray and Stephanie Lane Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA 15213, United States
raw_author_name: Feng Yue
raw_affiliation_strings: Department of Biochemistry and Molecular Genetics, Feinberg School of Medicine, Northwestern University , Chicago , IL 60611 ,
Department of Biochemistry and Molecular Genetics, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, United States
raw_author_name: J Michael Cherry
raw_affiliation_strings: Department of Genetics, Stanford University , Stanford , CA 94305 ,
Department of Genetics, Stanford University, Stanford, CA 94305, United States
raw_author_name: Michael I Love
raw_affiliation_strings: Department of Biostatistics, University of North Carolina, Chapel Hill , NC 27599 ,
Department of Genetics, University of North Carolina, Chapel Hill , NC 27599 ,
Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, United States
raw_author_name: Jesse M Engreitz
raw_affiliation_strings: Basic Science and Engineering Initiative, Stanford, Children’s Health, Betty Irene Moore Children’s Heart Center , Stanford , CA 94304 ,
Department of Genetics, Stanford University , Stanford , CA 94305 ,
Stanford Cardiovascular Institute, Stanford University , Stanford , CA 94305 ,
The Novo Nordisk Foundation Center for Genomic Mechanisms of Disease, Broad Institute , Cambridge , MA 02141 ,
The Novo Nordisk Foundation Center for Genomic Mechanisms of Disease, Broad Institute, Cambridge, MA 02141, United States
Department of Genetics, Stanford University, Stanford, CA 94305, United States
Basic Science and Engineering Initiative, Stanford, Children's Health, Betty Irene Moore Children's Heart Center, Stanford, CA 94304, United States
Stanford Cardiovascular Institute, Stanford University, Stanford, CA 94305, United States
raw_author_name: Benjamin C Hitz
raw_affiliation_strings: Department of Genetics, Stanford University , Stanford , CA 94305 ,
Department of Genetics, Stanford University, Stanford, CA 94305, United States
raw_author_name: Ting Wang
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McDonnell Genome Institute, Washington University School of Medicine , St. Louis , MO 63108 ,
McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO 63108, United States
Department of Genetics, The Edison Family Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis,MO 63110, United States