Scikit-bio: a fundamental Python library for biological omic data analysis
Year: 2025
Type: letter
Language: en
Topic: Bioinformatics and Genomic Networks
Authors and affiliations:
raw_author_name: Matthew Aton
raw_affiliation_strings: Biodesign Center for Fundamental and Applied Microbiomics, Arizona State University, Tempe, AZ, USA
raw_author_name: Daniel McDonald
raw_affiliation_strings: Department of Pediatrics, University of California San Diego School of Medicine, La Jolla, CA, USA
raw_author_name: Jorge Cañardo Alastuey
raw_affiliation_strings: Amazon Robotics, North Reading, MA, USA
College of Engineering and Applied Science, University of Colorado Boulder, Boulder, CO, USA
raw_author_name: Raeed Azom
raw_affiliation_strings: Biodesign Center for Fundamental and Applied Microbiomics, Arizona State University, Tempe, AZ, USA
raw_author_name: Paarth Batra
raw_affiliation_strings: Biodesign Center for Fundamental and Applied Microbiomics, Arizona State University, Tempe, AZ, USA
raw_author_name: Valentyn Bezshapkin
raw_affiliation_strings: Department of Biology, Institute of Microbiology and Swiss Institute of Bioinformatics, ETH Zurich, Zurich, Switzerland
raw_author_name: Evan Bolyen
raw_affiliation_strings: Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA
raw_author_name: Alexander Cagle
raw_affiliation_strings: Department of Pediatrics, University of California San Diego School of Medicine, La Jolla, CA, USA
raw_author_name: J. Gregory Caporaso
raw_affiliation_strings: Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA
raw_author_name: Justine W. Debelius
raw_affiliation_strings: Department of Epidemiology, Johns Hopkins Bloomberg School of Public Health, Johns Hopkins University, Baltimore, MD, USA
Department of Pediatrics, University of California San Diego School of Medicine, La Jolla, CA, USA
raw_author_name: Kestrel Gorlick
raw_affiliation_strings: Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA
raw_author_name: Nirmitha Hamsanipally
raw_affiliation_strings: Biodesign Center for Fundamental and Applied Microbiomics, Arizona State University, Tempe, AZ, USA
raw_author_name: Lars Hunger
raw_affiliation_strings: Gutz Analytics, LLC, Boulder, CO, USA
raw_author_name: Aryan Keluskar
raw_affiliation_strings: Biodesign Center for Fundamental and Applied Microbiomics, Arizona State University, Tempe, AZ, USA
raw_author_name: Disen Liao
raw_affiliation_strings: Cheriton School of Computer Science, University of Waterloo, Waterloo, Ontario, Canada
raw_author_name: Yang Young Lu
raw_affiliation_strings: Cheriton School of Computer Science, University of Waterloo, Waterloo, Ontario, Canada
Department of Biomedical Engineering and Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, WI, USA
raw_author_name: Jose A. Navas-Molina
raw_affiliation_strings: Department of Computer Science and Engineering, University of California San Diego, La Jolla, California, USA
Department of Pediatrics, University of California San Diego School of Medicine, La Jolla, CA, USA
Google LLC, Mountain View, CA, USA
raw_author_name: Anders Pitman
raw_affiliation_strings: Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA
University of Utah, Salt Lake City, UT, USA
raw_author_name: Jai Ram Rideout
raw_affiliation_strings: One Codex, Inc., Wilmington, DE, USA
Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA
raw_author_name: Anton Sazonov
raw_affiliation_strings: Biodesign Center for Fundamental and Applied Microbiomics, Arizona State University, Tempe, AZ, USA
raw_author_name: Bharath Sathappan
raw_affiliation_strings: Department of Pediatrics, University of California San Diego School of Medicine, La Jolla, CA, USA
raw_author_name: Karen Schwarzberg Lipson
raw_affiliation_strings: Chasing Value Asset Management, Inc., Santa Monica, CA, USA
Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA
raw_author_name: Igor Sfiligoi
raw_affiliation_strings: San Diego Supercomputer Center, University of California San Diego, La Jolla, CA, USA
raw_author_name: Chris Tapo
raw_affiliation_strings: Biodesign Center for Fundamental and Applied Microbiomics, Arizona State University, Tempe, AZ, USA
Department of Mathematics, College of Engineering and Polymer Science, University of Akron, Akron, OH, USA
raw_author_name: Yoshiki Vázquez-Baeza
raw_affiliation_strings: BiomeSense Inc., Chicago, IL, USA
Center for Microbiome Innovation, University of California San Diego, La Jolla, CA, USA
raw_author_name: Zijun Wu
raw_affiliation_strings: Biodesign Center for Fundamental and Applied Microbiomics, Arizona State University, Tempe, AZ, USA
raw_author_name: Zhenjiang Zech Xu
raw_affiliation_strings: Department of Pediatrics, University of California San Diego School of Medicine, La Jolla, CA, USA
State Key Laboratory of Food Science and Resources, Nanchang University, Nanchang, China
raw_author_name: Mingsong Sam Ye
raw_affiliation_strings: School of Business, Stevens Institute of Technology, Hoboken, NJ, USA
raw_author_name: Jianshu Zhao
raw_affiliation_strings: Department of Pediatrics, University of California San Diego School of Medicine, La Jolla, CA, USA
raw_author_name: Rob Knight
raw_affiliation_strings: Center for Microbiome Innovation, University of California San Diego, La Jolla, CA, USA. rknight@ucsd.edu
Department of Bioengineering, University of California San Diego, La Jolla, California, USA. rknight@ucsd.edu
Department of Computer Science and Engineering, University of California San Diego, La Jolla, California, USA. rknight@ucsd.edu
Department of Pediatrics, University of California San Diego School of Medicine, La Jolla, CA, USA. rknight@ucsd.edu
Department of Bioengineering, University of California San Diego, La Jolla, California, USA
raw_author_name: James T. Morton
raw_affiliation_strings: Gutz Analytics, LLC, Boulder, CO, USA. jamie@gutzanalytics.com
Gutz Analytics, LLC, Boulder, CO, USA
raw_author_name: Qiyun Zhu
raw_affiliation_strings: Biodesign Center for Fundamental and Applied Microbiomics, Arizona State University, Tempe, AZ, USA. qiyun.zhu@asu.edu
School of Life Sciences, Arizona State University, Tempe, AZ, USA. qiyun.zhu@asu.edu
School of Life Sciences, Arizona State University, Tempe, AZ, USA