JASPAR 2026: expansion of transcription factor binding profiles and integration of deep learning models
Year: 2025
Type: article
Language: en
Topic: Genomics and Chromatin Dynamics
Authors and affiliations:
raw_author_name: Damla Ovek Baydar
raw_affiliation_strings: Norwegian Centre for Molecular Biosciences and Medicine (NCMBM), Nordic EMBL Partnership, University of Oslo , Oslo 0318 ,
Norwegian Centre for Molecular Biosciences and Medicine (NCMBM), Nordic EMBL Partnership, University of Oslo, Oslo 0318, Norway
raw_author_name: Ieva Rauluseviciute
raw_affiliation_strings: Norwegian Centre for Molecular Biosciences and Medicine (NCMBM), Nordic EMBL Partnership, University of Oslo , Oslo 0318 ,
Norwegian Centre for Molecular Biosciences and Medicine (NCMBM), Nordic EMBL Partnership, University of Oslo, Oslo 0318, Norway
raw_author_name: Dina R Aronsen
raw_affiliation_strings: Norwegian Centre for Molecular Biosciences and Medicine (NCMBM), Nordic EMBL Partnership, University of Oslo , Oslo 0318 ,
Norwegian Centre for Molecular Biosciences and Medicine (NCMBM), Nordic EMBL Partnership, University of Oslo, Oslo 0318, Norway
raw_author_name: Romain Blanc-Mathieu
raw_affiliation_strings: Laboratoire Physiologie Cellulaire et Végétale, Univ. Grenoble Alpes, CNRS, CEA, INRAE, IRIG-DBSCI-LPCV , Grenoble F-38054 17 avenue des martyrs ,
raw_author_name: Ine Bonthuis
raw_affiliation_strings: Norwegian Centre for Molecular Biosciences and Medicine (NCMBM), Nordic EMBL Partnership, University of Oslo , Oslo 0318 ,
Norwegian Centre for Molecular Biosciences and Medicine (NCMBM), Nordic EMBL Partnership, University of Oslo, Oslo 0318, Norway
raw_author_name: Herman de Beukelaer
raw_affiliation_strings: Center for Plant Systems Biology , VIB 9051 Ghent ,
Department of Plant Biotechnology and Bioinformatics, Ghent University , 9051, Ghent ,
Center for Plant Systems Biology, VIB 9051 Ghent, Belgium
Department of Plant Biotechnology and Bioinformatics, Ghent University, 9051, Ghent, Belgium
raw_author_name: Katalin Ferenc
raw_affiliation_strings: Norwegian Centre for Molecular Biosciences and Medicine (NCMBM), Nordic EMBL Partnership, University of Oslo , Oslo 0318 ,
Norwegian Centre for Molecular Biosciences and Medicine (NCMBM), Nordic EMBL Partnership, University of Oslo, Oslo 0318, Norway
raw_author_name: Alice Jegou
raw_affiliation_strings: Laboratoire Physiologie Cellulaire et Végétale, Univ. Grenoble Alpes, CNRS, CEA, INRAE, IRIG-DBSCI-LPCV , Grenoble F-38054 17 avenue des martyrs ,
raw_author_name: Vipin Kumar
raw_affiliation_strings: Norwegian Centre for Molecular Biosciences and Medicine (NCMBM), Nordic EMBL Partnership, University of Oslo , Oslo 0318 ,
Norwegian Centre for Molecular Biosciences and Medicine (NCMBM), Nordic EMBL Partnership, University of Oslo, Oslo 0318, Norway
raw_author_name: Roza Berhanu Lemma
raw_affiliation_strings: Norwegian Centre for Molecular Biosciences and Medicine (NCMBM), Nordic EMBL Partnership, University of Oslo , Oslo 0318 ,
Norwegian Centre for Molecular Biosciences and Medicine (NCMBM), Nordic EMBL Partnership, University of Oslo, Oslo 0318, Norway
raw_author_name: Jérémy Lucas
raw_affiliation_strings: Laboratoire Physiologie Cellulaire et Végétale, Univ. Grenoble Alpes, CNRS, CEA, INRAE, IRIG-DBSCI-LPCV , Grenoble F-38054 17 avenue des martyrs ,
raw_author_name: Mathis Pochon
raw_affiliation_strings: Laboratoire Physiologie Cellulaire et Végétale, Univ. Grenoble Alpes, CNRS, CEA, INRAE, IRIG-DBSCI-LPCV , Grenoble F-38054 17 avenue des martyrs ,
raw_author_name: Chang M Yun
raw_affiliation_strings: Department of Chemical Engineering, Stanford University , Stanford, CA 94305,
Department of Chemical Engineering, Stanford University, Stanford, CA 94305,United States
raw_author_name: Vivekanandan Ramalingam
raw_affiliation_strings: Department of Genetics, Stanford University , Stanford, CA 94305,
Department of Genetics, Stanford University, Stanford, CA 94305,United States
raw_author_name: Salil Sanjay Deshpande
raw_affiliation_strings: Institute for Computational and Mathematical Engineering (ICME), Stanford University , Stanford, CA 94305,
Institute for Computational and Mathematical Engineering (ICME), Stanford University, Stanford, CA 94305,United States
raw_author_name: Aman Patel
raw_affiliation_strings: Department of Computer Science, Stanford University , Stanford, CA 94305,
Department of Computer Science, Stanford University, Stanford, CA 94305,United States
raw_author_name: Georgi K Marinov
raw_affiliation_strings: Department of Genetics, Stanford University , Stanford, CA 94305,
Department of Genetics, Stanford University, Stanford, CA 94305,United States
raw_author_name: Austin T Wang
raw_affiliation_strings: Department of Computer Science, Stanford University , Stanford, CA 94305,
Department of Computer Science, Stanford University, Stanford, CA 94305,United States
raw_author_name: Alejandro Aguirre
raw_affiliation_strings: Centre for Molecular Medicine and Therapeutics, Department of Medical Genetics, BC Children’s Hospital Research Institute, University of British Columbia , BC V5Z 4H4  Vancouver 950 W 28th Ave ,
Department of Medical Genetics, University of British Columbia , Vancouver, BC V6T 1Z3,
raw_author_name: Jaime A Castro-Mondragon
raw_affiliation_strings: Akershus University Hospital, Department of Clinical Molecular Biology, Unit for Precision Medicine , Lørenskog, 1478 ,
Norwegian Centre for Molecular Biosciences and Medicine (NCMBM), Nordic EMBL Partnership, University of Oslo , Oslo 0318 ,
Norwegian Centre for Molecular Biosciences and Medicine (NCMBM), Nordic EMBL Partnership, University of Oslo, Oslo 0318, Norway
raw_author_name: Damir Baranasic
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Institute of Clinical Sciences, Faculty of Medicine, Imperial College London, Hammersmith Hospital Campus , London W12 0NN Du Cane Road ,
MRC Laboratory of Medical Sciences , London W12 0NN Du Cane Road ,
Institute of Clinical Sciences, Faculty of Medicine, Imperial College London, Hammersmith Hospital Campus, London W12 0NN Du Cane Road, United Kingdom
MRC Laboratory of Medical Sciences, London W12 0NN Du Cane Road, United Kingdom
raw_author_name: Jeanne Chèneby
raw_affiliation_strings: Department of Biosciences, University of Oslo , Oslo 0316 ,
Department of Biosciences, University of Oslo, Oslo 0316, Norway
raw_author_name: Sveinung Gundersen
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Department of Biosciences, University of Oslo, Oslo 0316, Norway
raw_author_name: Morten Johansen
raw_affiliation_strings: Department of Biosciences, University of Oslo , Oslo 0316 ,
Department of Biosciences, University of Oslo, Oslo 0316, Norway
raw_author_name: Aziz Khan
raw_affiliation_strings: Department of Computational Biology, Mohamed bin Zayed University of Artificial Intelligence (MBZUAI) , Abu Dhabi ,
Department of Computational Biology, Mohamed bin Zayed University of Artificial Intelligence (MBZUAI), Abu Dhabi, UAE
raw_author_name: Marieke L Kuijjer
raw_affiliation_strings: Department of Biochemistry and Developmental Biology, University of Helsinki , Helsinki, 00014,
Norwegian Centre for Molecular Biosciences and Medicine (NCMBM), Nordic EMBL Partnership, University of Oslo , Oslo 0318 ,
iCAN Flagship in Digital Precision Cancer Medicine, University of Helsinki , Helsinki, 00014,
iCAN Flagship in Digital Precision Cancer Medicine, University of Helsinki, Helsinki, 00014,Finland
Norwegian Centre for Molecular Biosciences and Medicine (NCMBM), Nordic EMBL Partnership, University of Oslo, Oslo 0318, Norway
raw_author_name: Eivind Hovig
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Department of Biosciences, University of Oslo, Oslo 0316, Norway
raw_author_name: Boris Lenhard
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MRC Laboratory of Medical Sciences , London W12 0NN Du Cane Road ,
Institute of Clinical Sciences, Faculty of Medicine, Imperial College London, Hammersmith Hospital Campus, London W12 0NN Du Cane Road, United Kingdom
MRC Laboratory of Medical Sciences, London W12 0NN Du Cane Road, United Kingdom
raw_author_name: Albin Sandelin
raw_affiliation_strings: Department of Biology and Biotech Research and Innovation Centre, University of Copenhagen , Ole Maaløes Vej 5, Copenhagen DK2200 N ,
raw_author_name: Klaas Vandepoele
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Center for Plant Systems Biology , VIB 9051 Ghent ,
Department of Plant Biotechnology and Bioinformatics, Ghent University , 9051, Ghent ,
Department of Plant Biotechnology and Bioinformatics, Ghent University, 9051, Ghent, Belgium
Center for Plant Systems Biology, VIB 9051 Ghent, Belgium
raw_author_name: Wyeth W Wasserman
raw_affiliation_strings: Centre for Molecular Medicine and Therapeutics, Department of Medical Genetics, BC Children’s Hospital Research Institute, University of British Columbia , BC V5Z 4H4  Vancouver 950 W 28th Ave ,
Department of Medical Genetics, University of British Columbia , Vancouver, BC V6T 1Z3,
Department of Medical Genetics, University of British Columbia, Vancouver, BC V6T 1Z3,Canada
raw_author_name: François Parcy
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raw_author_name: Anshul Kundaje
raw_affiliation_strings: Department of Computer Science, Stanford University , Stanford, CA 94305,
Department of Genetics, Stanford University , Stanford, CA 94305,
Department of Computer Science, Stanford University, Stanford, CA 94305,United States
raw_author_name: Anthony Mathelier
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Department of Medical Genetics, Institute of Clinical Medicine, Oslo University Hospital and University of Oslo , Oslo 0318 ,
Norwegian Centre for Molecular Biosciences and Medicine (NCMBM), Nordic EMBL Partnership, University of Oslo , Oslo 0318 ,
Department of Medical Genetics, Institute of Clinical Medicine, Oslo University Hospital and University of Oslo, Oslo 0318, Norway
Norwegian Centre for Molecular Biosciences and Medicine (NCMBM), Nordic EMBL Partnership, University of Oslo, Oslo 0318, Norway