STREAMS guidelines: standards for technical reporting in environmental and host-associated microbiome studies
Year: 2025
Type: article
Language: en
Topic: Gut microbiota and health
Authors and affiliations:
raw_author_name: Julia M. Kelliher
raw_affiliation_strings: Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM, USA. jkelliher@lanl.gov
Department of Microbiology, Genetics, and Immunology, Michigan State University, East Lansing, MI, USA. jkelliher@lanl.gov
New Mexico Consortium, Los Alamos, NM, USA. jkelliher@lanl.gov
New Mexico Consortium, Los Alamos, NM, USA
Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM, USA
Department of Microbiology, Genetics, and Immunology, Michigan State University, East Lansing, MI, USA
raw_author_name: Chloe Mirzayi
raw_affiliation_strings: Institute for Implementation Science in Public Health, CUNY Graduate School of Public Health and Health Policy, New York, NY, USA
raw_author_name: Sarah R. Bordenstein
raw_affiliation_strings: Departments of Biology and Entomology, Pennsylvania State University, University Park, PA, USA
One Health Microbiome Center, Pennsylvania State University, University Park, PA, USA
raw_author_name: Aaron Oliver
raw_affiliation_strings: Center for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA, USA
raw_author_name: Christina A. Kellogg
raw_affiliation_strings: US Geological Survey, St. Petersburg, FL, USA
raw_author_name: Eneida L. Hatcher
raw_affiliation_strings: National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA
raw_author_name: Maureen Berg
raw_affiliation_strings: DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
raw_author_name: Petr Baldrian
raw_affiliation_strings: Laboratory of Environmental Microbiology, Institute of Microbiology of the Czech Academy of Sciences, Prague, Czech Republic
raw_author_name: Mashael Aljumaah
raw_affiliation_strings: Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, Saudi Arabia
UNC Microbiome Core, Center for Gastrointestinal Biology and Disease, School of Medicine, University of North Carolina, Chapel Hill, NC, USA
raw_author_name: Cassandra Maria Luz Miller
raw_affiliation_strings: Department of Biology, University of New Mexico, Sevilleta LTER, Albuquerque, NM, USA
raw_author_name: Christopher Mungall
raw_affiliation_strings: Lawrence Berkeley National Laboratory, Berkeley, CA, USA
raw_author_name: Vlastimil Novak
raw_affiliation_strings: Lawrence Berkeley National Laboratory, Berkeley, CA, USA
raw_author_name: Alexis Palucki
raw_affiliation_strings: MCIBS, Huck Institutes of the Life Sciences, Pennsylvania State University, University Park, PA, USA
raw_author_name: Ethan Smith
raw_affiliation_strings: Department of Animal Science, Pennsylvania State University, University Park, PA, USA
raw_author_name: Nazifa Tabassum
raw_affiliation_strings: Huck Institutes of the Life Sciences, Pennsylvania State University, University Park, PA, USA
raw_author_name: Gregory Bonito
raw_affiliation_strings: Department of Microbiology, Genetics, and Immunology, Michigan State University, East Lansing, MI, USA
raw_author_name: J. Rodney Brister
raw_affiliation_strings: National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA
raw_author_name: Patrick S. G. Chain
raw_affiliation_strings: Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM, USA
raw_author_name: Mingfei Chen
raw_affiliation_strings: Lawrence Berkeley National Laboratory, Berkeley, CA, USA
raw_author_name: Samuel Degregori
raw_affiliation_strings: Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA
raw_author_name: Jose Pablo Dundore-Arias
raw_affiliation_strings: Department of Biology and Chemistry, California State University, Monterey Bay, Seaside, CA, USA
raw_author_name: Joanne B. Emerson
raw_affiliation_strings: University of California, Davis, Davis, CA, USA
raw_author_name: Vanessa Moreira C. Fernandes
raw_affiliation_strings: Department of Biological Sciences, Charles E. Schmidt College of Science, Florida Atlantic University, Boca Raton, FL, USA
raw_author_name: Roberto Flores
raw_affiliation_strings: National Institute on Aging, National Institutes of Health, Bethesda, MD, USA
raw_author_name: Antonio Gonzalez
raw_affiliation_strings: Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA
raw_author_name: Zoe A. Hansen
raw_affiliation_strings: Department of Plant Pathology, University of Minnesota, Saint Paul, MN, USA
raw_author_name: Scott A. Jackson
raw_affiliation_strings: National Institute of Standards and Technology, Gaithersburg, MD, USA
raw_author_name: Ahmed M. Moustafa
raw_affiliation_strings: Center for Microbial Medicine, Children's Hospital of Philadelphia, Philadelphia, PA, USA
Department of Pediatrics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA
Division of Gastroenterology, Hepatology, and Nutrition, Children's Hospital of Philadelphia, Philadelphia, PA, USA
raw_author_name: Trent R. Northen
raw_affiliation_strings: Lawrence Berkeley National Laboratory, Berkeley, CA, USA
raw_author_name: Nonia Pariente
raw_affiliation_strings: Public Library of Science, Cambridge, UK
Public Library of Science, San Francisco, CA, USA
raw_author_name: Jennifer Pett-Ridge
raw_affiliation_strings: Innovative Genomics Institute, University of California, Berkeley, Berkeley, CA, USA
Life and Environmental Sciences Department, University of California, Merced, Merced, CA, USA
Physical and Life Sciences Directorate, Lawrence Livermore National Laboratory, Livermore, CA, USA
raw_author_name: Sydne Record
raw_affiliation_strings: Maine Agricultural and Forest Experiment Station, Orono, ME, USA
University of Maine, Orono, ME, USA
raw_author_name: Linta Reji
raw_affiliation_strings: University of Chicago, Chicago, IL, USA
raw_author_name: Anna-Louise Reysenbach
raw_affiliation_strings: Center for Life in Extreme Environments, Portland State University, Portland, OR, USA
raw_author_name: Virginia I. Rich
raw_affiliation_strings: Department of Microbiology, The Ohio State University, Columbus, OH, USA
The Ohio State University Center of Microbiome Science, Columbus, OH, USA
raw_author_name: Lorna Richardson
raw_affiliation_strings: EMBL-European Bioinformatics Institute, Hinxton, UK
raw_author_name: Simon Roux
raw_affiliation_strings: Lawrence Berkeley National Laboratory, Berkeley, CA, USA
raw_author_name: Lynn M. Schriml
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raw_author_name: Reed S. Shabman
raw_affiliation_strings: Office of Data Science and Emerging Technologies, National Institute of Allergy and Infectious Diseases, Bethesda, MD, USA
raw_author_name: Maria A. Sierra
raw_affiliation_strings: Tri-Institutional Computational Biology, Weill Cornell Medicine, New York, NY, USA
raw_author_name: Matthew B. Sullivan
raw_affiliation_strings: Department of Microbiology, The Ohio State University, Columbus, OH, USA
The Ohio State University Center of Microbiome Science, Columbus, OH, USA
raw_author_name: Punithavathi Sundaramurthy
raw_affiliation_strings: University of California, San Francisco, San Francisco, CA, USA
raw_author_name: Katherine M. Thibault
raw_affiliation_strings: National Ecological Observatory Network, Battelle, Boulder, CO, USA
raw_author_name: Luke R. Thompson
raw_affiliation_strings: Northern Gulf Institute, Mississippi State University, Starkville, MS, USA
Ocean Chemistry and Ecosystems Division, Atlantic Oceanographic and Meteorological Laboratory, National Oceanic and Atmospheric Administration, Miami, FL, USA
raw_author_name: Scott Tighe
raw_affiliation_strings: University of Vermont, Burlington, VT, USA
raw_author_name: Ethell Vereen
raw_affiliation_strings: Morehouse College, Atlanta, GA, USA
raw_author_name: Aaron Robinson
raw_affiliation_strings: Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM, USA
raw_author_name: Abdoul R. Sare
raw_affiliation_strings: Biological Laboratory, Defence Laboratories Department, Belgian Defence, Brussels, Belgium
raw_author_name: Abdulmalik A. Oladipupo
raw_affiliation_strings: Auburn University, School of Fisheries, Aquaculture and Aquatic Sciences, Auburn, AL, USA
raw_author_name: Adrien Vigneron
raw_affiliation_strings: Université Claude Bernard Lyon 1, INSA Lyon, CNRS, UMR5240 Microbiologie Adaptation et Pathogénie, Villeurbanne, France
raw_author_name: Ahmed A. Shibl
raw_affiliation_strings: KAUST Beacon Development, King Abdullah University for Science and Technology, Jeddah, Saudi Arabia
Biology Department, New York University Abu Dhabi, Abu Dhabi, UAE
raw_author_name: Alejandro De Santiago
raw_affiliation_strings: Institute of Bioinformatics and Department of Marine Sciences, University of Georgia, Athens, GA, USA
raw_author_name: Alexander J. Probst
raw_affiliation_strings: Department for Environmental Metagenomics, Research Center One Health Ruhr of the University Alliance Ruhr, Faculty of Chemistry, University of Duisburg-Essen, Essen, Germany
raw_author_name: Ali Navid
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raw_author_name: Alice C. McHardy
raw_affiliation_strings: Braunschweig Integrated Centre of Systems Biology, Technische Universität Braunschweig, Braunschweig, Germany
Computational Biology of Infection Research, Helmholtz Centre for Infection Research, Braunschweig, Germany
raw_author_name: Alicia Clum
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raw_author_name: Alison Buchan
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raw_author_name: Alison Murray
raw_affiliation_strings: Division of Earth and Ecosystem Sciences, Desert Research Institute, Reno, NV, USA
raw_author_name: Alla Lapidus
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raw_author_name: Amanda Araujo Serrao de Andrade
raw_affiliation_strings: Integrative Viromics Lab, University of Calgary, Calgary, Alberta, Canada
raw_author_name: Andreas Bremges
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raw_author_name: Archana Anand
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raw_author_name: Ashvini Chauhan
raw_affiliation_strings: Microbiomics Laboratory, School of the Environment, Florida Agricultural and Mechanical University, Tallahassee, FL, USA
raw_author_name: Avishek Dutta
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raw_author_name: Bablu Kumar
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Department of Biosciences, Biotechnologies and Environment, University of Bari, Bari, Italy
raw_author_name: Bela Hausmann
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raw_author_name: Benoit Chassaing
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raw_author_name: Braden T. Tierney
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raw_author_name: Brian P. Hedlund
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raw_author_name: Chongle Pan
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raw_author_name: Chris Robinson
raw_affiliation_strings: Indiana University, Bloomington, IN, USA
raw_author_name: Christian Hodar Quiroga
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raw_author_name: Christine Moissl-Eichinger
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raw_author_name: Christopher Hunter
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raw_author_name: Christopher Schadt
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raw_author_name: Christos Ouzounis
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raw_author_name: Craig W. Herbold
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raw_author_name: Cristal Zuniga
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raw_author_name: Cruz Mercedes Cecilia
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Department of Biology, Marquette University, Milwaukee, WI, USA
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raw_author_name: D. Lee Taylor
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raw_author_name: Daniel McDonald
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raw_author_name: Dennis Metze
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