Molecular Recognition and Cocrystallization of Methylated and Halogenated Fragments of Danicalipin A by Enantiopure Alleno-Acetylenic Cage Receptors.
Gropp, Cornelius; Fischer, Stefan; Husch, Tamara; Trapp, Nils; Carreira, Erick M.; Diederich, François; Journal of the American Chemical Society 142 (2020) 4749–4755; doi:10.1021/jacs.9b13217

data_4134284
_publ_section_title
;
 Molecular Recognition and Cocrystallization of Methylated and Halogenated
 Fragments of Danicalipin A by Enantiopure Alleno-Acetylenic Cage
 Receptors.
;
_journal_issue                   10
_journal_name_full               'Journal of the American Chemical Society'
_journal_page_first              4749
_journal_page_last               4755
_journal_paper_doi               10.1021/jacs.9b13217
_journal_volume                  142
_journal_year                    2020
_chemical_absolute_configuration ad
_chemical_formula_moiety         'C128 H168 O12, C4 H8 Cl2 O'
_chemical_formula_sum            'C132 H176 Cl2 O13'
_chemical_formula_weight         2041.62
_space_group_crystal_system      orthorhombic
_space_group_IT_number           19
_space_group_name_Hall           'P 2ac 2ab'
_space_group_name_H-M_alt        'P 21 21 21'
_atom_sites_solution_hydrogens   geom
_atom_sites_solution_primary     dual
_audit_creation_date             2017-11-03
_audit_creation_method
;
Olex2 1.2
(compiled 2017.08.10 svn.r3458 for OlexSys, GUI svn.r5381)
;
_cell_angle_alpha                90
_cell_angle_beta                 90
_cell_angle_gamma                90
_cell_formula_units_Z            4
_cell_length_a                   15.59180(10)
_cell_length_b                   18.73920(10)
_cell_length_c                   43.8114(2)
_cell_measurement_reflns_used    109748
_cell_measurement_temperature    100.0(1)
_cell_measurement_theta_max      79.3780
_cell_measurement_theta_min      3.4780
_cell_volume                     12800.72(12)
_computing_cell_refinement       'CrysAlisPro 1.171.39.31d (Rigaku OD, 2017)'
_computing_data_collection       'CrysAlisPro 1.171.39.31d (Rigaku OD, 2017)'
_computing_data_reduction        'CrysAlisPro 1.171.39.31d (Rigaku OD, 2017)'
_computing_molecular_graphics    'Olex2 (Dolomanov et al., 2009)'
_computing_publication_material  'Olex2 (Dolomanov et al., 2009)'
_computing_structure_refinement  'ShelXL (Sheldrick, 2015)'
_computing_structure_solution    'ShelXT (Sheldrick, 2015)'
_diffrn_ambient_environment      N~2~
_diffrn_ambient_temperature      100.0(1)
_diffrn_detector                 'CCD plate'
_diffrn_detector_type            'Pilatus 300K'
_diffrn_measured_fraction_theta_full 1.000
_diffrn_measured_fraction_theta_max 0.995
_diffrn_measurement_details
;
List of Runs (angles in degrees, time in seconds):

  # Type    Start    End  Width  t~exp~   \w     \q     \k     \f   Frames
--------------------------------------------------------------------------
  1  \w   -116.00 -78.00   0.50    2.12    --  -49.37 -77.00 150.00   76
  2  \w   -116.00 -78.00   0.50    2.12    --  -49.37 -77.00   0.00   76
  3  \w   -116.00 -78.00   0.50    2.12    --  -49.37 -77.00 -30.00   76
  4  \w   -116.00 -78.00   0.50    2.12    --  -49.37 -77.00 -90.00   76
  5  \w   -116.00 -78.00   0.50    2.12    --  -49.37 -77.00-120.00   76
  6  \w   -116.00 -78.00   0.50    2.12    --  -49.37 -77.00-150.00   76
  7  \w   -137.00 -78.00   0.50    8.49    --  -70.00 -77.00-180.00  118
  8  \w   -137.00 -78.00   0.50    8.49    --  -70.00 -77.00   0.00  118
  9  \w    -86.00   2.00   0.50    8.49    --  -70.00  57.00 -60.00  176
 10  \w    -73.00  17.00   0.50    2.12    --  -49.37  77.00 -60.00  180
 11  \w     59.00 120.00   0.50    2.12    --   49.37 178.00  90.00  122
 12  \w     91.00 178.00   0.50    8.49    --  110.00 125.00 150.00  174
 13  \w    129.00 170.00   0.50    8.49    --  110.00  77.00  90.00   82
 14  \w    146.00 173.00   0.50    8.49    --  110.00  57.00   0.00   54
 15  \w    118.00 178.00   0.50    8.49    --  110.00  99.00-122.00  120
 16  \w     86.00 177.00   0.50    8.49    --  110.00  77.00-150.00  182
 17  \w     94.00 123.00   0.50    8.49    --  110.00 -19.00 -30.00   58
 18  \w     94.00 122.00   0.50    8.49    --  110.00 -19.00   0.00   56
 19  \w     94.00 123.00   0.50    8.49    --  110.00 -19.00 -60.00   58
 20  \w     81.00 107.00   0.50    8.49    --  110.00 -77.00 -30.00   52
 21  \w     71.00 109.00   0.50    8.49    --  110.00 -99.00   0.00   76
 22  \w     94.00 119.00   0.50    8.49    --  110.00 -19.00  60.00   50
 23  \w     96.00 122.00   0.50    8.49    --  110.00 -19.00 120.00   52
 24  \w    100.00 136.00   0.50    8.49    --  110.00  38.00  90.00   72
 25  \w     94.00 133.00   0.50    8.49    --  110.00  57.00   0.00   78
 26  \w     91.00 178.00   0.50    8.49    --  110.00 125.00   0.00  174
 27  \w     91.00 178.00   0.50    8.49    --  110.00 125.00 -30.00  174
 28  \w     86.00 177.00   0.50    8.49    --  110.00  77.00-180.00  182
 29  \w     94.00 120.00   0.50    8.49    --  110.00 -19.00-150.00   52
 30  \w     83.00 109.00   0.50    8.49    --  110.00 -99.00-150.00   52
 31  \w     40.00  86.00   0.50    8.49    --  110.00 -99.00 -30.00   92
 32  \w     47.00 118.00   0.50    8.49    --  110.00-125.00 -30.00  142
 33  \w     38.00  84.00   0.50    8.49    --  110.00 -57.00 -60.00   92
 34  \w     40.00  66.00   0.50    8.49    --  110.00 -99.00   0.00   52
 35  \w     45.00  81.00   0.50    8.49    --  110.00 -99.00  90.00   72
 36  \w     65.00 109.00   0.50    8.49    --  110.00 -99.00 150.00   88
 37  \w     39.00 122.00   0.50    8.49    --  110.00-125.00 150.00  166
 38  \w     38.00  84.00   0.50    8.49    --  110.00 -57.00 120.00   92
 39  \w     78.00 116.00   0.50    2.12    --   49.37  77.00 -60.00   76
 40  \w     86.00 126.00   0.50    8.49    --  110.00  77.00  90.00   80
 41  \w     38.00  69.00   0.50    8.49    --  110.00 -57.00-150.00   62
 42  \w     34.00 101.00   0.50    2.12    --   49.37-131.00-120.00  134
 43  \w    -26.00  55.00   0.50    2.12    --   49.37 -19.00 120.00  162
 44  \w    -94.00  -3.00   0.50    8.49    --  -70.00  77.00 120.00  182
;
_diffrn_measurement_device       'four-circle diffractometer'
_diffrn_measurement_device_type  'XtaLAB Synergy, Dualflex, Pilatus 300K'
_diffrn_measurement_method       '\w scans'
_diffrn_orient_matrix_type
'CrysAlisPro convention (1999,Acta A55,543-557)'
_diffrn_orient_matrix_UB_11      0.0314588000
_diffrn_orient_matrix_UB_12      0.0776813000
_diffrn_orient_matrix_UB_13      0.0027934000
_diffrn_orient_matrix_UB_21      0.0051927000
_diffrn_orient_matrix_UB_22      0.0054386000
_diffrn_orient_matrix_UB_23      -0.0350347000
_diffrn_orient_matrix_UB_31      -0.0935124000
_diffrn_orient_matrix_UB_32      0.0263981000
_diffrn_orient_matrix_UB_33      -0.0010036000
_diffrn_radiation_monochromator  mirror
_diffrn_radiation_probe          x-ray
_diffrn_radiation_type           CuK\a
_diffrn_radiation_wavelength     1.54184
_diffrn_reflns_av_R_equivalents  0.0447
_diffrn_reflns_av_unetI/netI     0.0236
_diffrn_reflns_Laue_measured_fraction_full 1.000
_diffrn_reflns_Laue_measured_fraction_max 0.995
_diffrn_reflns_limit_h_max       18
_diffrn_reflns_limit_h_min       -19
_diffrn_reflns_limit_k_max       23
_diffrn_reflns_limit_k_min       -23
_diffrn_reflns_limit_l_max       54
_diffrn_reflns_limit_l_min       -55
_diffrn_reflns_number            212369
_diffrn_reflns_point_group_measured_fraction_full 1.000
_diffrn_reflns_point_group_measured_fraction_max 0.989
_diffrn_reflns_theta_full        67.684
_diffrn_reflns_theta_max         79.690
_diffrn_reflns_theta_min         3.103
_diffrn_source                   'micro-focus sealed X-ray tube'
_diffrn_source_type              'PhotonJet (Cu) X-ray Source'
_exptl_absorpt_coefficient_mu    0.888
_exptl_absorpt_correction_T_max  1.000
_exptl_absorpt_correction_T_min  0.727
_exptl_absorpt_correction_type   gaussian
_exptl_absorpt_process_details
;
CrysAlisPro 1.171.39.31d (Rigaku Oxford Diffraction, 2017)
Numerical absorption correction based on gaussian integration over
			a multifaceted crystal model
Empirical absorption correction using spherical harmonics,
 implemented in SCALE3 ABSPACK scaling algorithm.
;
_exptl_crystal_colour            'clear colourless'
_exptl_crystal_colour_lustre     clear
_exptl_crystal_colour_primary    colourless
_exptl_crystal_density_diffrn    1.059
_exptl_crystal_description       plank
_exptl_crystal_F_000             4424
_exptl_crystal_size_max          0.187
_exptl_crystal_size_mid          0.096
_exptl_crystal_size_min          0.036
_refine_diff_density_max         0.598
_refine_diff_density_min         -0.862
_refine_diff_density_rms         0.050
_refine_ls_abs_structure_details
;
 Flack x determined using 10877 quotients [(I+)-(I-)]/[(I+)+(I-)]
 (Parsons, Flack and Wagner, Acta Cryst. B69 (2013) 249-259).
;
_refine_ls_abs_structure_Flack   0.025(4)
_refine_ls_extinction_method     none
_refine_ls_goodness_of_fit_ref   1.028
_refine_ls_hydrogen_treatment    constr
_refine_ls_matrix_type           full
_refine_ls_number_parameters     1446
_refine_ls_number_reflns         27540
_refine_ls_number_restraints     270
_refine_ls_restrained_S_all      1.046
_refine_ls_R_factor_all          0.0542
_refine_ls_R_factor_gt           0.0506
_refine_ls_shift/su_max          0.001
_refine_ls_shift/su_mean         0.000
_refine_ls_structure_factor_coef Fsqd
_refine_ls_weighting_details
'w=1/[\s^2^(Fo^2^)+(0.1027P)^2^+3.1407P] where P=(Fo^2^+2Fc^2^)/3'
_refine_ls_weighting_scheme      calc
_refine_ls_wR_factor_gt          0.1463
_refine_ls_wR_factor_ref         0.1504
_reflns_Friedel_coverage         0.839
_reflns_Friedel_fraction_full    1.000
_reflns_Friedel_fraction_max     0.982
_reflns_number_gt                25574
_reflns_number_total             27540
_reflns_threshold_expression     'I > 2\s(I)'
_cod_data_source_file            CCDC-1914853.cif
_cod_data_source_block           d160815_44_31
_cod_depositor_comments
'Adding full bibliography for 4134283--4134298.cif.'
_cod_database_code               4134284
_shelx_shelxl_version_number     2016/6
_chemical_oxdiff_formula         C132H176Cl2O13
_reflns_odcompleteness_completeness 99.95
_reflns_odcompleteness_iscentric 1
_reflns_odcompleteness_theta     66.97
_olex2_refinement_description
;
1. Fixed Uiso
 At 1.2 times of:
  All C(H) groups, All C(H,H) groups, All C(H,H,H,H) groups
 At 1.5 times of:
  All C(H,H,H) groups, All O(H) groups
2. Restrained distances
 C5-C4 = C5-C4A = C4-C3 = C4A-C3A = C3-C2 = C3A-C2A = C2-C1 = C2A-C1A
 1.5 with sigma of 0.005
 Cl2C-C3D \\sim Cl2C-C3C
 with sigma of 0.02
 C4C-C3C \\sim C4D-C3D
 with sigma of 0.02
 C3C-C2C \\sim C3D-C2D
 with sigma of 0.02
 C2C-C1C \\sim C2D-C1C
 with sigma of 0.02
 Cl1C-C2C \\sim Cl1C-C2D
 with sigma of 0.02
 C6-C5 \\sim C5-C4 \\sim C5-C4A \\sim C4-C3 \\sim C4A-C3A \\sim C3-C2 \\sim
C3A-C2A \\sim C2-C1 \\sim C2A-C1A
 with sigma of 0.02
 C1-C3 \\sim C1A-C3A \\sim C2-C4 \\sim C2A-C4A \\sim C3-C5 \\sim C3A-C5 \\sim
C4-C6 \\sim C4A-C6
 with sigma of 0.02
 C11-C10 \\sim C9-C10 \\sim C9-C8 \\sim C9-C8A \\sim C8-C7 \\sim C8A-C7A
 with sigma of 0.02
 C7-C9 \\sim C7A-C9 \\sim C8-C10 \\sim C8A-C10
 with sigma of 0.02
3. Rigid bond restraints
 C1, C2, C3, C4, C5, C4A, C3A, C2A, C1A
 with sigma for 1-2 distances of 0.01 and sigma for 1-3 distances of 0.01
 C7, C8, C9, C10, C11, C111, C8A, C7A
 with sigma for 1-2 distances of 0.01 and sigma for 1-3 distances of 0.01
4. Uiso/Uaniso restraints and constraints
Uanis(C2A) = Uanis(C2)
5. Rigid body (RIGU) restrains
 Cl1C, Cl2C, O1C, C1C, C2C, C3C, C4C, C2D, C3D, C4D
 with sigma for 1-2 distances of 0.004 and sigma for 1-3 distances of 0.004
 C1, C2, C3, C4, C5, C4A, C3A, C2A, C1A
 with sigma for 1-2 distances of 0.004 and sigma for 1-3 distances of 0.004
 C8, C9, C10, C11, C111, C8A, C7, C7A
 with sigma for 1-2 distances of 0.004 and sigma for 1-3 distances of 0.004
6. Others
 Sof(H1CD)=Sof(H1CE)=Sof(C2D)=Sof(H2D)=Sof(C3D)=Sof(H3D)=Sof(C4D)=Sof(H4DA)=
 Sof(H4DB)=Sof(H4DC)=1-FVAR(1)
 Sof(H1CB)=Sof(H1CC)=Sof(C2C)=Sof(H2C)=Sof(C3C)=Sof(H3C)=Sof(C4C)=Sof(H4CA)=
 Sof(H4CB)=Sof(H4CC)=FVAR(1)
 Sof(H5BC)=Sof(H5BD)=Sof(H9BC)=Sof(H9BD)=Sof(C4A)=Sof(H4AA)=Sof(H4AB)=Sof(C3A)=
 Sof(H3AA)=Sof(H3AB)=Sof(C2A)=Sof(H2AA)=Sof(H2AB)=Sof(C1A)=Sof(H1AA)=Sof(H1AB)=
 Sof(H1AC)=Sof(C8A)=Sof(H8AA)=Sof(H8AB)=Sof(C7A)=Sof(H7AA)=Sof(H7AB)=Sof(H7AC)=
 1-FVAR(2)
 Sof(C1)=Sof(H1A)=Sof(H1B)=Sof(H1C)=Sof(C2)=Sof(H2A)=Sof(H2B)=Sof(C3)=Sof(H3A)=
 Sof(H3B)=Sof(C4)=Sof(H4A)=Sof(H4B)=Sof(H5AA)=Sof(H5AB)=Sof(C7)=Sof(H7A)=
 Sof(H7B)=Sof(H7C)=Sof(C8)=Sof(H8A)=Sof(H8B)=Sof(H9AA)=Sof(H9AB)=FVAR(2)
7.a Ternary CH refined with riding coordinates:
 C38(H38), C49(H49), C57(H57), C62(H62), C2C(H2C), C3C(H3C), C2D(H2D), C3D(H3D)
7.b Secondary CH2 refined with riding coordinates:
 C2(H2A,H2B), C3(H3A,H3B), C4(H4A,H4B), C5(H5AA,H5AB), C5(H5BC,H5BD), C6(H6A,
 H6B), C8(H8A,H8B), C9(H9AA,H9AB), C9(H9BC,H9BD), C10(H10A,H10B), C11(H11A,
 H11B), C12(H12A,H12B), C14(H14A,H14B), C15(H15A,H15B), C16(H16A,H16B),
 C17(H17A,H17B), C18(H18A,H18B), C20(H20A,H20B), C21(H21A,H21B), C22(H22A,H22B),
  C23(H23A,H23B), C24(H24A,H24B), C66(H66A,H66B), C69(H69A,H69B), C72(H72A,
 H72B), C82(H82A,H82B), C1C(H1CD,H1CE), C1C(H1CB,H1CC), C4A(H4AA,H4AB),
 C3A(H3AA,H3AB), C2A(H2AA,H2AB), C8A(H8AA,H8AB)
7.c Aromatic/amide H refined with riding coordinates:
 C26(H26), C40(H40), C41(H41), C48(H48)
7.d Idealised Me refined as rotating group:
 C1(H1A,H1B,H1C), C7(H7A,H7B,H7C), C13(H13A,H13B,H13C), C19(H19A,H19B,H19C),
 C93(H93A,H93B,H93C), C96(H96A,H96B,H96C), C97(H97A,H97B,H97C), C99(H99A,H99B,
 H99C), C101(H10C,H10D,H10E), C102(H10F,H10G,H10H), C103(H10I,H10J,H10K),
 C104(H10L,H10M,H10N), C105(H10O,H10P,H10Q), C106(H10R,H10S,H10T), C107(H10U,
 H10V,H10W), C108(H10X,H10Y,H), C109(H10Z,HA,HB), C110(H11C,H11D,H11E),
 C111(H11F,H11G,H11H), C112(H11I,H11J,H11K), C113(H11L,H11M,H11N), C114(H11O,
 H11P,H11Q), C115(H11R,H11S,H11T), C116(H11U,H11V,H11W), C117(H11X,H11Y,HC),
 C118(H11Z,HD,HE), C119(H11,HF,HG), C120(H12C,H12D,H12E), C121(H12F,H12G,H12H),
 C122(H12I,H12J,H12K), C123(H12L,H12M,H12N), C124(H12O,H12P,H12Q), C125(H12R,
 H12S,H12T), C126(H12U,H12V,H12W), C127(H12X,H12Y,HH), C128(H12Z,HI,HJ),
 C4C(H4CA,H4CB,H4CC), C4D(H4DA,H4DB,H4DC), C1A(H1AA,H1AB,H1AC), C7A(H7AA,H7AB,
 H7AC)
7.e Idealised tetrahedral OH refined as rotating group:
 O1(H1), O2(H2), O3(H3), O4(H4), O1C(H1CA)
;
_shelx_res_checksum              83658
_shelx_hkl_checksum              47661
_olex2_date_sample_data_collection 2017-10-25
_olex2_date_sample_submission    2017-10-25
_olex2_submission_original_sample_id d160815_44_31
_olex2_submission_special_instructions 'No special instructions were received'
_oxdiff_exptl_absorpt_empirical_details
;
Empirical correction (ABSPACK) includes:
- Absorption correction using spherical harmonics
- Frame scaling
- Detector area scaling
;
_oxdiff_exptl_absorpt_empirical_full_max 1.813
_oxdiff_exptl_absorpt_empirical_full_min 0.803