A soft phosphorus atom to "harden" an erbium(iii) single-ion magnet.
Chen, Shi-Ming; Xiong, Jin; Zhang, Yi-Quan; Yuan, Qiong; Wang, Bing-Wu; Gao, Song; Chemical science 9 (2018) 7540–7545; doi:10.1039/c8sc01626g

data_1549770
_publ_section_title
;
 A soft phosphorus atom to &quot;harden&quot; an erbium(iii) single-ion
 magnet.
;
_journal_issue                   38
_journal_name_full               'Chemical science'
_journal_page_first              7540
_journal_page_last               7545
_journal_paper_doi               10.1039/c8sc01626g
_journal_volume                  9
_journal_year                    2018
_chemical_formula_moiety         'C12 H24 P Si2 Tm, C8 H8'
_chemical_formula_sum            'C20 H32 P Si2 Tm'
_chemical_formula_weight         528.53
_space_group_crystal_system      monoclinic
_space_group_IT_number           14
_space_group_name_Hall           '-P 2ybc'
_space_group_name_H-M_alt        'P 1 21/c 1'
_symmetry_space_group_name_Hall  '-P 2ybc'
_symmetry_space_group_name_H-M   'P 1 21/c 1'
_atom_sites_solution_hydrogens   geom
_atom_sites_solution_primary     iterative
_audit_creation_date             2017-06-07
_audit_creation_method
;
Olex2 1.2
(compiled 2016.09.09 svn.r3337 for OlexSys, GUI svn.r5227)
;
_audit_update_record
;
2018-04-10 deposited with the CCDC.
2018-08-01 downloaded from the CCDC.
;
_cell_angle_alpha                90
_cell_angle_beta                 95.125(5)
_cell_angle_gamma                90
_cell_formula_units_Z            4
_cell_length_a                   15.0719(8)
_cell_length_b                   10.8053(6)
_cell_length_c                   14.3183(9)
_cell_measurement_reflns_used    3612
_cell_measurement_temperature    180.00(10)
_cell_measurement_theta_max      27.4370
_cell_measurement_theta_min      3.2980
_cell_volume                     2322.5(2)
_computing_cell_refinement
;
CrysAlisPro, Agilent Technologies,
Version 1.171.36.32 (release 02-08-2013 CrysAlis171 .NET)
(compiled Aug  2 2013,16:46:58)
;
_computing_data_collection
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CrysAlisPro, Agilent Technologies,
Version 1.171.36.32 (release 02-08-2013 CrysAlis171 .NET)
(compiled Aug  2 2013,16:46:58)
;
_computing_data_reduction
;
CrysAlisPro, Agilent Technologies,
Version 1.171.36.32 (release 02-08-2013 CrysAlis171 .NET)
(compiled Aug  2 2013,16:46:58)
;
_computing_molecular_graphics    'Olex2 (Dolomanov et al., 2009)'
_computing_publication_material  'Olex2 (Dolomanov et al., 2009)'
_computing_structure_refinement  'ShelXL (Sheldrick, 2015)'
_computing_structure_solution
;
Superflip (Palatinus & Chapuis, 2007;Palatinus & van der Lee, 2008;
Palatinus et al., 2012)
;
_diffrn_ambient_temperature      180.00(10)
_diffrn_detector_area_resol_mean 10.3914
_diffrn_measured_fraction_theta_full 0.996
_diffrn_measured_fraction_theta_max 0.879
_diffrn_measurement_details
;
  1 omega  -53.00   35.00   1.0000    8.0000
omega____ theta____ kappa____ phi______ frames
    -       13.4628  -57.0000   90.0000 88

  2 omega  -55.00   34.00   1.0000    8.0000
omega____ theta____ kappa____ phi______ frames
    -       13.4628  -77.0000 -150.0000 89

  3 omega  -15.00   54.00   1.0000    8.0000
omega____ theta____ kappa____ phi______ frames
    -       13.4628  -99.0000  -30.0000 69

  4 omega   -7.00   27.00   1.0000    8.0000
omega____ theta____ kappa____ phi______ frames
    -      -14.5566  -99.0000  -30.0000 34
;
_diffrn_measurement_device_type  'SuperNova, Dual, Cu at zero, Atlas'
_diffrn_measurement_method       '\w scans'
_diffrn_orient_matrix_UB_11      -0.0041573000
_diffrn_orient_matrix_UB_12      0.0640366000
_diffrn_orient_matrix_UB_13      0.0096022000
_diffrn_orient_matrix_UB_21      0.0446369000
_diffrn_orient_matrix_UB_22      0.0011272000
_diffrn_orient_matrix_UB_23      0.0203797000
_diffrn_orient_matrix_UB_31      0.0149152000
_diffrn_orient_matrix_UB_32      0.0144033000
_diffrn_orient_matrix_UB_33      -0.0443412000
_diffrn_radiation_monochromator  mirror
_diffrn_radiation_type           MoK\a
_diffrn_radiation_wavelength     0.710
_diffrn_reflns_av_R_equivalents  0.0512
_diffrn_reflns_av_unetI/netI     0.0731
_diffrn_reflns_Laue_measured_fraction_full 0.996
_diffrn_reflns_Laue_measured_fraction_max 0.879
_diffrn_reflns_limit_h_max       19
_diffrn_reflns_limit_h_min       -16
_diffrn_reflns_limit_k_max       14
_diffrn_reflns_limit_k_min       -14
_diffrn_reflns_limit_l_max       19
_diffrn_reflns_limit_l_min       -20
_diffrn_reflns_number            17109
_diffrn_reflns_point_group_measured_fraction_full 0.996
_diffrn_reflns_point_group_measured_fraction_max 0.879
_diffrn_reflns_theta_full        25.214
_diffrn_reflns_theta_max         30.283
_diffrn_reflns_theta_min         3.267
_diffrn_source                   'SuperNova (Mo) X-ray Source'
_exptl_absorpt_coefficient_mu    3.992
_exptl_absorpt_correction_T_max  1.00000
_exptl_absorpt_correction_T_min  0.88887
_exptl_absorpt_correction_type   multi-scan
_exptl_absorpt_process_details
;
CrysAlisPro, Agilent Technologies,
Version 1.171.36.32 (release 02-08-2013 CrysAlis171 .NET)
(compiled Aug  2 2013,16:46:58)
Empirical absorption correction using spherical harmonics,
 implemented in SCALE3 ABSPACK scaling algorithm.
;
_exptl_crystal_colour            'clear dark orange'
_exptl_crystal_colour_lustre     clear
_exptl_crystal_colour_modifier   dark
_exptl_crystal_colour_primary    orange
_exptl_crystal_density_diffrn    1.512
_exptl_crystal_description       block
_exptl_crystal_F_000             1056
_exptl_crystal_size_max          0.15
_exptl_crystal_size_mid          0.1
_exptl_crystal_size_min          0.05
_refine_diff_density_max         1.609
_refine_diff_density_min         -0.937
_refine_diff_density_rms         0.145
_refine_ls_extinction_method     none
_refine_ls_goodness_of_fit_ref   1.045
_refine_ls_hydrogen_treatment    constr
_refine_ls_matrix_type           full
_refine_ls_number_parameters     298
_refine_ls_number_reflns         6133
_refine_ls_number_restraints     342
_refine_ls_restrained_S_all      1.030
_refine_ls_R_factor_all          0.0775
_refine_ls_R_factor_gt           0.0400
_refine_ls_shift/su_max          0.000
_refine_ls_shift/su_mean         0.000
_refine_ls_structure_factor_coef Fsqd
_refine_ls_weighting_details
'w=1/[\s^2^(Fo^2^)+(0.0176P)^2^] where P=(Fo^2^+2Fc^2^)/3'
_refine_ls_weighting_scheme      calc
_refine_ls_wR_factor_gt          0.0594
_refine_ls_wR_factor_ref         0.0723
_reflns_Friedel_coverage         0.000
_reflns_number_gt                4208
_reflns_number_total             6133
_reflns_threshold_expression     'I > 2\s(I)'
_cod_data_source_file            c8sc01626g2.cif
_cod_data_source_block           1_reducted_CCDC3
_cod_depositor_comments
'Adding full bibliography for 1549767--1549771.cif.'
_cod_database_code               1549770
_shelxl_version_number           2014-3
_chemical_oxdiff_formula         'C20 H32 Si2 P1 Tm1'
_reflns_odcompleteness_completeness 99.47
_reflns_odcompleteness_iscentric 1
_reflns_odcompleteness_theta     27.42
_olex2_refinement_description
;
1. Fixed Uiso
 At 1.2 times of:
  All C(H) groups
 At 1.5 times of:
  All C(H,H,H) groups
2. Restrained distances
 C1-C2 \\sim C2-C3
 with sigma of 0.015
 C2-C3 \\sim C3-C4
 with sigma of 0.015
 C3-C4 \\sim C4-C5
 with sigma of 0.015
 C4-C5 \\sim C5-C6
 with sigma of 0.015
 C5-C6 \\sim C6-C7
 with sigma of 0.015
 C6-C7 \\sim C7-C8
 with sigma of 0.015
 C7-C8 \\sim C8-C1
 with sigma of 0.015
 C8-C1 \\sim C1-C2
 with sigma of 0.015
 C1B-C2B \\sim C2B-C3B
 with sigma of 0.015
 C2B-C3B \\sim C3B-C4B
 with sigma of 0.015
 C3B-C4B \\sim C4B-C5B
 with sigma of 0.015
 C4B-C5B \\sim C5B-C6B
 with sigma of 0.015
 C5B-C6B \\sim C6B-C7B
 with sigma of 0.015
 C6B-C7B \\sim C7B-C8B
 with sigma of 0.015
 C7B-C8B \\sim C8B-C1B
 with sigma of 0.015
 C8B-C1B \\sim C1B-C2B
 with sigma of 0.015
3. Restrained planarity
 C5, C4, C7, C3, C1, C8, C6, C2
 with sigma of 0.1
 C3B, C2B, C6B, C5B, C7B, C4B, C8B, C1B
 with sigma of 0.1
4. Rigid bond restraints
 C5, C4, C3, C2, C1, C6, C7, C8
 with sigma for 1-2 distances of 0.01 and sigma for 1-3 distances of 0.01
 C4B, C5B, C6B, C7B, C8B, C3B, C2B, C1B
 with sigma for 1-2 distances of 0.01 and sigma for 1-3 distances of 0.01
 C1, C2
 with sigma for 1-2 distances of 0.01 and sigma for 1-3 distances of 0.01
 C2, C3
 with sigma for 1-2 distances of 0.01 and sigma for 1-3 distances of 0.01
 C3, C4
 with sigma for 1-2 distances of 0.01 and sigma for 1-3 distances of 0.01
 C4, C5
 with sigma for 1-2 distances of 0.01 and sigma for 1-3 distances of 0.01
 C5, C6
 with sigma for 1-2 distances of 0.01 and sigma for 1-3 distances of 0.01
 C6, C7
 with sigma for 1-2 distances of 0.01 and sigma for 1-3 distances of 0.01
 C7, C8
 with sigma for 1-2 distances of 0.01 and sigma for 1-3 distances of 0.01
 C8, C1
 with sigma for 1-2 distances of 0.01 and sigma for 1-3 distances of 0.01
 C1B, C2B
 with sigma for 1-2 distances of 0.01 and sigma for 1-3 distances of 0.01
 C2B, C3B
 with sigma for 1-2 distances of 0.01 and sigma for 1-3 distances of 0.01
 C3B, C4B
 with sigma for 1-2 distances of 0.01 and sigma for 1-3 distances of 0.01
 C4B, C5B
 with sigma for 1-2 distances of 0.01 and sigma for 1-3 distances of 0.01
 C5B, C6B
 with sigma for 1-2 distances of 0.01 and sigma for 1-3 distances of 0.01
 C6B, C7B
 with sigma for 1-2 distances of 0.01 and sigma for 1-3 distances of 0.01
 C7B, C8B
 with sigma for 1-2 distances of 0.01 and sigma for 1-3 distances of 0.01
 C8B, C1B
 with sigma for 1-2 distances of 0.01 and sigma for 1-3 distances of 0.01
5. Uiso/Uaniso restraints and constraints
C5 \\sim C4 \\sim C3 \\sim C2 \\sim C1 \\sim C6 \\sim C7 \\sim C8: within 1.7A
with sigma of 0.04 and sigma for terminal atoms of 0.08
C4B \\sim C5B \\sim C6B \\sim C7B \\sim C8B \\sim C3B \\sim C2B \\sim C1B:
within 1.7A with sigma of 0.04 and sigma for terminal atoms of 0.08
C1 \\sim C2: within 1.7A with sigma of 0.04 and sigma for terminal atoms of 0.08
C2 \\sim C3: within 1.7A with sigma of 0.04 and sigma for terminal atoms of 0.08
C3 \\sim C4: within 1.7A with sigma of 0.04 and sigma for terminal atoms of 0.08
C4 \\sim C5: within 1.7A with sigma of 0.04 and sigma for terminal atoms of 0.08
C5 \\sim C6: within 1.7A with sigma of 0.04 and sigma for terminal atoms of 0.08
C6 \\sim C7: within 1.7A with sigma of 0.04 and sigma for terminal atoms of 0.08
C7 \\sim C8: within 1.7A with sigma of 0.04 and sigma for terminal atoms of 0.08
C8 \\sim C1: within 1.7A with sigma of 0.04 and sigma for terminal atoms of 0.08
C1B \\sim C2B: within 1.7A with sigma of 0.04 and sigma for terminal atoms of
0.08
C2B \\sim C3B: within 1.7A with sigma of 0.04 and sigma for terminal atoms of
0.08
C3B \\sim C4B: within 1.7A with sigma of 0.04 and sigma for terminal atoms of
0.08
C4B \\sim C5B: within 1.7A with sigma of 0.04 and sigma for terminal atoms of
0.08
C5B \\sim C6B: within 1.7A with sigma of 0.04 and sigma for terminal atoms of
0.08
C6B \\sim C7B: within 1.7A with sigma of 0.04 and sigma for terminal atoms of
0.08
C7B \\sim C8B: within 1.7A with sigma of 0.04 and sigma for terminal atoms of
0.08
C8B \\sim C1B: within 1.7A with sigma of 0.04 and sigma for terminal atoms of
0.08
Uanis(C16) \\sim Ueq, Uanis(C15) \\sim Ueq, Uanis(C17) \\sim Ueq, Uanis(C18)
\\sim Ueq, Uanis(C20) \\sim Ueq, Uanis(C19) \\sim Ueq: with sigma of 0.01 and
sigma for terminal atoms of 0.01
Uanis(C4B) \\sim Ueq, Uanis(C5B) \\sim Ueq, Uanis(C6B) \\sim Ueq, Uanis(C7B)
\\sim Ueq, Uanis(C8B) \\sim Ueq, Uanis(C3B) \\sim Ueq, Uanis(C2B) \\sim Ueq,
Uanis(C1B) \\sim Ueq: with sigma of 0.02 and sigma for terminal atoms of 0.02
Uanis(C5) \\sim Ueq, Uanis(C4) \\sim Ueq, Uanis(C3) \\sim Ueq, Uanis(C2) \\sim
Ueq, Uanis(C1) \\sim Ueq, Uanis(C6) \\sim Ueq, Uanis(C7) \\sim Ueq, Uanis(C8)
\\sim Ueq: with sigma of 0.02 and sigma for terminal atoms of 0.02
6. Same fragment restrains
{C3B, C2B, C1B, C8B, C7B, C4B, C5B, C6B} sigma for 1-2: 0.02, 1-3: 0.02
as
{C3, C2, C1, C8, C7, C4, C5, C6}
7. Others
 Sof(C3B)=Sof(H3B)=Sof(C2B)=Sof(H2B)=Sof(C1B)=Sof(H1B)=Sof(C8B)=Sof(H8B)=
 Sof(C7B)=Sof(H7B)=Sof(C4B)=Sof(H4B)=Sof(C5B)=Sof(H5B)=Sof(C6B)=Sof(H6B)=1-
 FVAR(1)
 Sof(C3)=Sof(H3)=Sof(C2)=Sof(H2)=Sof(C1)=Sof(H1)=Sof(C8)=Sof(H8)=Sof(C7)=
 Sof(H7)=Sof(C4)=Sof(H4)=Sof(C5)=Sof(H5)=Sof(C6)=Sof(H6)=FVAR(1)
8.a Aromatic/amide H refined with riding coordinates:
 C3(H3), C2(H2), C1(H1), C8(H8), C7(H7), C4(H4), C5(H5), C6(H6), C3B(H3B),
 C2B(H2B), C1B(H1B), C8B(H8B), C7B(H7B), C4B(H4B), C5B(H5B), C6B(H6B)
8.b Idealised Me refined as rotating group:
 C20(H20A,H20B,H20C), C13(H13A,H13B,H13C), C19(H19A,H19B,H19C), C17(H17A,H17B,
 H17C), C15(H15A,H15B,H15C), C16(H16A,H16B,H16C), C14(H14A,H14B,H14C), C18(H18A,
 H18B,H18C)
;
_shelx_res_checksum              23523
_olex2_submission_special_instructions 'No special instructions were received'