Encapsulation of N-containing compounds in a new hydrophilic Cd-based crystalline sponge via coordinative alignment method
Habib, Faiza; Tocher, Derek A.; Carmalt, Claire J.; CrystEngComm 25 (2023) 5001–5011; doi:10.1039/D3CE00592E

data_7247196
_publ_section_title
;
 Encapsulation of N-containing compounds in a new hydrophilic Cd-based
 crystalline sponge via coordinative alignment method
;
_journal_issue                   35
_journal_name_full               CrystEngComm
_journal_page_first              5001
_journal_page_last               5011
_journal_paper_doi               10.1039/D3CE00592E
_journal_volume                  25
_journal_year                    2023
_chemical_formula_moiety
'0.33(C310 H212 Cd14 N38 O80), 1.33(C3 H6 O), 0.67(C5 H4 O)'
_chemical_formula_sum            'C110.67 H81.33 Cd4.67 N12.67 O28.67'
_chemical_formula_weight         2571.75
_chemical_name_systematic        xstr1410
_space_group_crystal_system      monoclinic
_space_group_IT_number           14
_space_group_name_Hall           '-P 2yn'
_space_group_name_H-M_alt        'P 1 21/n 1'
_atom_sites_solution_hydrogens   geom
_atom_sites_solution_primary     iterative
_audit_creation_date             2022-08-29
_audit_creation_method
;
Olex2 1.2
(compiled 2018.05.29 svn.r3508 for OlexSys, GUI svn.r5506)
;
_audit_update_record
;
2023-06-12 deposited with the CCDC.	2023-08-04 downloaded from the CCDC.
;
_cell_angle_alpha                90
_cell_angle_beta                 94.5246(7)
_cell_angle_gamma                90
_cell_formula_units_Z            6
_cell_length_a                   14.05890(12)
_cell_length_b                   43.1549(2)
_cell_length_c                   33.7222(2)
_cell_measurement_reflns_used    136618
_cell_measurement_temperature    150.00(10)
_cell_measurement_theta_max      73.2900
_cell_measurement_theta_min      3.6710
_cell_volume                     20395.8(2)
_computing_cell_refinement       'CrysAlisPro 1.171.41.112a (Rigaku OD, 2021)'
_computing_data_collection       'CrysAlisPro 1.171.41.112a (Rigaku OD, 2021)'
_computing_data_reduction        'CrysAlisPro 1.171.41.112a (Rigaku OD, 2021)'
_computing_molecular_graphics    'Olex2 (Dolomanov et al., 2009)'
_computing_publication_material  'Olex2 (Dolomanov et al., 2009)'
_computing_structure_refinement  'ShelXL (Sheldrick, 2015)'
_computing_structure_solution    'olex2.solve (Bourhis et al., 2015)'
_diffrn_ambient_environment      N~2~
_diffrn_ambient_temperature      150.00(10)
_diffrn_detector                 'CCD plate'
_diffrn_detector_area_resol_mean 5.2031
_diffrn_detector_type            Atlas
_diffrn_measured_fraction_theta_full 0.999
_diffrn_measured_fraction_theta_max 0.988
_diffrn_measurement_details
;
List of Runs (angles in degrees, time in seconds):

  # Type    Start    End  Width  t~exp~   \w     \q     \k     \f   Frames
  1  \w    -69.00   3.00   0.75    3.70    --  -42.62 112.00  38.00   96
  2  \w     19.00  46.00   0.75    3.70    --   42.62-112.00 -54.00   36
  3  \w     31.00 108.25   0.75   12.76    --  106.06-112.00 -54.00  103
  4  \w    116.00 141.50   0.75   12.76    --  106.06 112.00  38.00   34
  5  \w   -117.00 -66.00   0.75    3.70    --  -42.62 -38.00 -60.00   68
  6  \w    -96.00 -60.75   0.75    3.70    --  -42.62 -57.00 150.00   47
  7  \w   -116.00 -14.00   0.75    3.70    --  -42.62 -57.00  90.00  136
  8  \w   -109.00 -82.00   0.75    3.70    --  -42.62 -57.00 -90.00   36
  9  \w    -63.00 -21.00   0.75    3.70    --  -42.62 -38.00 -60.00   56
 10  \w    -56.00 -17.75   0.75    3.70    --  -42.62 -57.00 150.00   51
 11  \w   -116.00 -14.00   0.75    3.70    --  -42.62 -57.00-150.00  136
 12  \w    -75.00  -6.00   0.75    3.70    --  -42.62 125.00 150.00   92
 13  \w   -111.00 -15.00   0.75    3.70    --  -42.62 -57.00  30.00  128
 14  \w    -60.00 -15.75   0.75    3.70    --  -42.62 -57.00 -90.00   59
 15  \w     10.00  41.50   0.75    3.70    --   42.62  80.00-153.79   42
 16  \w      9.00  41.25   0.75    3.70    --   42.62  81.00  91.33   43
 17  \w      9.00  42.00   0.75    3.70    --   42.62  81.00  12.83   44
 18  \w    -20.00  74.50   0.75    3.70    --   42.62 -77.00 -60.00  126
 19  \w     12.00  39.00   0.75    3.70    --   42.62  81.00 160.45   36
 20  \w      9.00  41.25   0.75    3.70    --   42.62  81.00 -83.81   43
 21  \w    116.00 144.50   0.75   12.76    --  106.06  61.00 -90.00   38
 22  \w     78.00 109.50   0.75   12.76    --  106.06  58.00  71.82   42
 23  \w     77.00 107.00   0.75   12.76    --  106.06  61.00 -90.00   40
 24  \w     98.00 173.00   0.75   12.76    --  106.06 125.00  90.00  100
 25  \w     79.00 172.00   0.75   12.76    --  106.06  49.00 -31.37  124
 26  \w     76.00 127.00   0.75   12.76    --  106.06  67.00  41.48   68
 27  \w    140.00 167.00   0.75   12.76    --  106.06  71.00  10.05   36
 28  \w     75.00 121.50   0.75   12.76    --  106.06  69.00 124.74   62
 29  \w     34.00 106.00   0.75   12.76    --  106.06-125.00 -90.00   96
 30  \w     76.00 102.25   0.75   12.76    --  106.06  67.00   0.00   35
 31  \w     77.00 103.25   0.75   12.76    --  106.06  61.00 -60.00   35
 32  \w     79.00 106.00   0.75   12.76    --  106.06  53.00 -98.69   36
 33  \w     41.00 107.00   0.75   12.76    --  106.06-101.00  76.02   88
 34  \w     77.00 167.00   0.75   12.76    --  106.06  61.00  -4.54  120
 35  \w     75.00 101.25   0.75   12.76    --  106.06  71.00  10.05   35
 36  \w    113.00 140.00   0.75   12.76    --  106.06  61.00  90.00   36
 37  \w     77.00 103.25   0.75   12.76    --  106.06  61.00 120.00   35
 38  \w     77.00 111.50   0.75   12.76    --  106.06  61.00  90.00   46
 39  \w     24.00  97.50   0.75   12.76    --  106.06 -94.00  30.00   98
 40  \w     78.00 104.25   0.75   12.76    --  106.06  58.00 -12.86   35
 41  \w     75.00 101.25   0.75   12.76    --  106.06  71.00-172.08   35
 42  \w     77.00 103.25   0.75   12.76    --  106.06  63.00 -41.21   35
 43  \w     77.00 103.25   0.75   12.76    --  106.06  61.00 -30.00   35
 44  \w     76.00 102.25   0.75   12.76    --  106.06  68.00  69.29   35
 45  \w    107.00 176.00   0.75   12.76    --  106.06  68.00  69.29   92
 46  \w     75.00 101.25   0.75   12.76    --  106.06  69.00-132.74   35
 47  \w     76.00 102.25   0.75   12.76    --  106.06  67.00  92.07   35
 48  \w     77.00 136.25   0.75   12.76    --  106.06  61.00  60.00   79
 49  \w     77.00 103.25   0.75   12.76    --  106.06  60.00 -96.88   35
 50  \w     76.00 102.25   0.75   12.76    --  106.06  67.00 148.63   35
 51  \w     76.00 102.25   0.75   12.76    --  106.06  66.00  30.28   35
 52  \w     77.00 177.50   0.75   12.76    --  106.06  61.00 -74.15  134
 53  \w     78.00 155.25   0.75   12.76    --  106.06  57.00 151.99  103
 54  \w     75.00 101.25   0.75   12.76    --  106.06  69.00 159.89   35
 55  \w     85.00 111.25   0.75   12.76    --  106.06-125.00-150.00   35
 56  \w     77.00 103.25   0.75   12.76    --  106.06  63.00 107.61   35
 57  \w     51.00  78.00   0.75   12.76    --  106.06-125.00-150.00   36
 58  \w     77.00 104.00   0.75   12.76    --  106.06  61.00-150.00   36
 59  \w     77.00 176.00   0.75   12.76    --  106.06  61.00-180.00  132
 60  \w     34.00 124.00   0.75   12.76    --  106.06 -61.00  90.00  120
 61  \w     76.00 177.25   0.75   12.76    --  106.06  69.00-137.84  135
;
_diffrn_measurement_device       'four-circle diffractometer'
_diffrn_measurement_device_type  'SuperNova, Dual, Cu at home/near, Atlas'
_diffrn_measurement_method       '\w scans'
_diffrn_orient_matrix_type
'CrysAlisPro convention (1999,Acta A55,543-557)'
_diffrn_orient_matrix_UB_11      0.0033465000
_diffrn_orient_matrix_UB_12      0.0346339000
_diffrn_orient_matrix_UB_13      -0.0109104000
_diffrn_orient_matrix_UB_21      0.0981688000
_diffrn_orient_matrix_UB_22      -0.0048130000
_diffrn_orient_matrix_UB_23      -0.0163671000
_diffrn_orient_matrix_UB_31      -0.0492569000
_diffrn_orient_matrix_UB_32      -0.0072517000
_diffrn_orient_matrix_UB_33      -0.0413880000
_diffrn_radiation_monochromator  mirror
_diffrn_radiation_probe          x-ray
_diffrn_radiation_type           CuK\a
_diffrn_radiation_wavelength     1.54184
_diffrn_reflns_av_R_equivalents  0.0712
_diffrn_reflns_av_unetI/netI     0.0310
_diffrn_reflns_Laue_measured_fraction_full 0.999
_diffrn_reflns_Laue_measured_fraction_max 0.988
_diffrn_reflns_limit_h_max       17
_diffrn_reflns_limit_h_min       -17
_diffrn_reflns_limit_k_max       53
_diffrn_reflns_limit_k_min       -53
_diffrn_reflns_limit_l_max       40
_diffrn_reflns_limit_l_min       -41
_diffrn_reflns_number            368403
_diffrn_reflns_point_group_measured_fraction_full 0.999
_diffrn_reflns_point_group_measured_fraction_max 0.988
_diffrn_reflns_theta_full        67.684
_diffrn_reflns_theta_max         73.533
_diffrn_reflns_theta_min         3.474
_diffrn_source                   'micro-focus sealed X-ray tube'
_diffrn_source_type              'SuperNova (Cu) X-ray Source'
_exptl_absorpt_coefficient_mu    6.312
_exptl_absorpt_correction_T_max  1.00000
_exptl_absorpt_correction_T_min  0.38859
_exptl_absorpt_correction_type   multi-scan
_exptl_absorpt_process_details
;
CrysAlisPro 1.171.41.112a (Rigaku Oxford Diffraction, 2021)
Empirical absorption correction using spherical harmonics,
implemented in SCALE3 ABSPACK scaling algorithm.
;
_exptl_crystal_colour            'clear light colourless'
_exptl_crystal_colour_lustre     clear
_exptl_crystal_colour_modifier   light
_exptl_crystal_colour_primary    colourless
_exptl_crystal_density_diffrn    1.256
_exptl_crystal_description       block
_exptl_crystal_F_000             7724
_exptl_crystal_size_max          0.25
_exptl_crystal_size_mid          0.05
_exptl_crystal_size_min          0.03
_refine_diff_density_max         2.622
_refine_diff_density_min         -1.421
_refine_diff_density_rms         0.152
_refine_ls_extinction_method     none
_refine_ls_goodness_of_fit_ref   1.046
_refine_ls_hydrogen_treatment    constr
_refine_ls_matrix_type           full
_refine_ls_number_parameters     1942
_refine_ls_number_reflns         40647
_refine_ls_number_restraints     280
_refine_ls_restrained_S_all      1.043
_refine_ls_R_factor_all          0.0954
_refine_ls_R_factor_gt           0.0797
_refine_ls_shift/su_max          0.009
_refine_ls_shift/su_mean         0.000
_refine_ls_structure_factor_coef Fsqd
_refine_ls_weighting_details
'w=1/[\s^2^(Fo^2^)+(0.0952P)^2^+191.0943P] where P=(Fo^2^+2Fc^2^)/3'
_refine_ls_weighting_scheme      calc
_refine_ls_wR_factor_gt          0.2062
_refine_ls_wR_factor_ref         0.2236
_reflns_Friedel_coverage         0.000
_reflns_number_gt                33403
_reflns_number_total             40647
_reflns_threshold_expression     'I > 2\s(I)'
_cod_data_source_file            d3ce00592e2.cif
_cod_data_source_block           xstr1410_auto
_cod_depositor_comments
'Adding full bibliography for 7247186--7247196.cif.'
_cod_original_cell_volume        20395.9(2)
_cod_database_code               7247196
_shelx_shelxl_version_number     2017/1
_chemical_oxdiff_formula         Cd7C130H110N25O35
_shelx_estimated_absorpt_t_max   0.833
_shelx_estimated_absorpt_t_min   0.301
_diffrn_oxdiff_digest_frames
;
0130db65db821d84a00b83f48a4a4da8a40002845e7
;
_diffrn_oxdiff_digest_hkl
;
019d24f557d22f0d6f16ca58bf718d9a28eb5d
;
_reflns_odcompleteness_completeness 99.87
_reflns_odcompleteness_iscentric 1
_reflns_odcompleteness_theta     66.97
_olex2_refinement_description
;
1. Fixed Uiso
 At 1.2 times of:
  All C(H) groups, All N(H) groups
 At 1.5 times of:
  All C(H,H,H) groups
2. Restrained distances
 C168-C166 = C167-C166 = C164-C163 = C165-C163 = C162-C160 = C161-C160 = C159-
 C157 = C158-C157
 1.54 with sigma of 0.002
 O41-C157 = O42-C160 = O44-C166 = O43-C163
 1.23 with sigma of 0.002
 C172-C171 = C171-C170
 1.54 with sigma of 0.002
 C170-C169
 1.54 with sigma of 0.002
 O45-C171
 1.23 with sigma of 0.002
3. Uiso/Uaniso restraints and constraints
N1 \\sim C31 \\sim C32 \\sim C33 \\sim C34 \\sim C35: within 1.7A with sigma of
0.004 and sigma for terminal atoms of 0.008
Uanis(O42) \\sim Ueq, Uanis(C160) \\sim Ueq, Uanis(C162) \\sim Ueq, Uanis(C161)
\\sim Ueq: with sigma of 0.001 and sigma for terminal atoms of 0.002
Uanis(C165) \\sim Ueq, Uanis(C163) \\sim Ueq, Uanis(C164) \\sim Ueq, Uanis(O43)
\\sim Ueq: with sigma of 0.001 and sigma for terminal atoms of 0.002
Uanis(O41) \\sim Ueq, Uanis(C157) \\sim Ueq, Uanis(C159) \\sim Ueq, Uanis(C158)
\\sim Ueq: with sigma of 0.001 and sigma for terminal atoms of 0.002
Uanis(C169) \\sim Ueq, Uanis(C170) \\sim Ueq, Uanis(C171) \\sim Ueq,
Uanis(C172) \\sim Ueq, Uanis(O45) \\sim Ueq, Uanis(C173) \\sim Ueq, Uanis(C174)
\\sim Ueq, Uanis(C175) \\sim Ueq, Uanis(C176) \\sim Ueq, Uanis(C177) \\sim Ueq:
with sigma of 0.001 and sigma for terminal atoms of 0.002
Uanis(C167) \\sim Ueq, Uanis(C166) \\sim Ueq, Uanis(O44) \\sim Ueq, Uanis(C168)
\\sim Ueq: with sigma of 0.001 and sigma for terminal atoms of 0.002
Uanis(C122) \\sim Ueq, Uanis(C123) \\sim Ueq, Uanis(C124) \\sim Ueq,
Uanis(C125) \\sim Ueq, Uanis(C126) \\sim Ueq, Uanis(N16) \\sim Ueq: with sigma
of 0.001 and sigma for terminal atoms of 0.002
Uanis(N15) \\sim Ueq, Uanis(C117) \\sim Ueq, Uanis(C118) \\sim Ueq, Uanis(C119)
\\sim Ueq, Uanis(C120) \\sim Ueq, Uanis(C121) \\sim Ueq: with sigma of 0.001
and sigma for terminal atoms of 0.002
Uanis(C34) = Uanis(C35) = Uanis(C31) = Uanis(C32) = Uanis(C33) = Uanis(N1)
Uanis(C120) = Uanis(C119) = Uanis(C118) = Uanis(C117) = Uanis(N15) = Uanis(C121)
Uanis(C173) = Uanis(C172) = Uanis(C177) = Uanis(C176) = Uanis(C175) =
Uanis(C174) = Uanis(C171) = Uanis(O45) = Uanis(C170) = Uanis(C169)
Uanis(N11) = Uanis(C94) = Uanis(C95) = Uanis(C96) = Uanis(C97) = Uanis(C98)
Uanis(N2) = Uanis(C42) = Uanis(C41) = Uanis(C40) = Uanis(C39) = Uanis(C38)
Uanis(N13) = Uanis(C112) = Uanis(C113) = Uanis(C114) = Uanis(C115) = Uanis(C116)
4. Others
 Fixed Sof: C97(0.5) H97(0.5) C98(0.5) H98(0.5) O41(0.5) C157(0.5) C158(0.5)
 H15D(0.5) H15E(0.5) H15F(0.5) C159(0.5) H15A(0.5) H15B(0.5) H15C(0.5) O42(0.5)
 C160(0.5) C161(0.5) H16D(0.5) H16E(0.5) H16F(0.5) C162(0.5) H16G(0.5)
 H16H(0.5) H16I(0.5) O43(0.5) C163(0.5) C164(0.5) H16P(0.5) H16Q(0.5) H16R(0.5)
 C165(0.5) H16S(0.5) H16T(0.5) H16U(0.5) O44(0.5) C166(0.5) C167(0.5) H16J(0.5)
 H16K(0.5) H16L(0.5) C168(0.5) H16M(0.5) H16N(0.5) H16O(0.5) C169(0.5)
 H16A(0.5) H16B(0.5) H16C(0.5) C170(0.5) C177(0.5) H177(0.5) C172(0.5)
 C173(0.5) H173(0.5) C174(0.5) H174(0.5) C175(0.5) H175(0.5) C176(0.5) H176(0.5)
5.a Aromatic/amide H refined with riding coordinates:
 C42(H42), C41(H41), C40(H40), C39(H39), C38(H38), N3(H3), N4(H4), N5(H5),
 N6(H6), N7(H7), N9(H9), N10(H10A), N12(H12), C112(H112), C113(H113),
 C114(H114), C115(H115), C116(H116), C107(H107), C108(H108), C109(H109),
 C110(H110), C111(H111), N17(H17), N18(H18), N19(H19), C3(H3A), C4(H4A),
 C6(H6A), C7(H7A), C10(H10), C12(H12A), C14(H14), C17(H17A), C18(H18A),
 C20(H20), C21(H21), C25(H25), C26(H26), C28(H28), C29(H29), C35(H35), C31(H31),
  C32(H32), C33(H33), C34(H34), C37(H37), C45(H45), C46(H46), C48(H48),
 C49(H49), C52(H52), C54(H54), C56(H56), C59(H59), C60(H60), C62(H62), C63(H63),
  C66(H66), C67(H67), C69(H69), C70(H70), C74(H74), C75(H75), C77(H77),
 C78(H78), C81(H81), C83(H83), C85(H85), C88(H88), C89(H89), C91(H91), C92(H92),
  C95(H95), C96(H96), C97(H97), C98(H98), C94(H94), C101(H101), C102(H102),
 C104(H104), C105(H105), C121(H121), C120(H120), C119(H119), C118(H118),
 C117(H117), C122(H122), C126(H126), C125(H125), C124(H124), C123(H123),
 C129(H129), C130(H130), C132(H132), C133(H133), C136(H136), C138(H138),
 C140(H140), C143(H143), C144(H144), C146(H146), C147(H147), C151(H151),
 C152(H152), C154(H154), C155(H155), C177(H177), C173(H173), C174(H174),
 C175(H175), C176(H176)
5.b Fitted hexagon refined as free rotating group:
 N2(C42,C41,C40,C39,C38), N13(C112,C113,C114,C115,C116), N14(C107,C108,C109,
 C110,C111), C35(N1,C31,C32,C33,C34), C95(C96,C97,C98,N11,C94), C121(C120,C119,
 C118,C117,N15), C122(N16,C126,C125,C124,C123), C177(C172,C173,C174,C175,C176)
5.c Idealised Me refined as rotating group:
 C158(H15D,H15E,H15F), C159(H15A,H15B,H15C), C161(H16D,H16E,H16F), C162(H16G,
 H16H,H16I), C164(H16P,H16Q,H16R), C165(H16S,H16T,H16U), C167(H16J,H16K,H16L),
 C168(H16M,H16N,H16O), C169(H16A,H16B,H16C)
;
_olex2_submission_special_instructions 'No special instructions were received'
_oxdiff_exptl_absorpt_empirical_details
;
Empirical correction (ABSPACK) includes:
- Absorption correction using spherical harmonics
- Frame scaling
- Detector area scaling
;
_oxdiff_exptl_absorpt_empirical_full_max 1.931
_oxdiff_exptl_absorpt_empirical_full_min 0.631