Sublyratins A-O, Labdane-Type Diterpenoids from <i>Croton sublyratus</i>.
Qi, Jing-Jing; Zhou, Jun-Su; Zhang, Yan; Fan, Yao-Yue; Zhou, Bin; Liu, Hong-Chun; Zhao, Jin-Xin; Yue, Jian-Min; Journal of natural products 84 (2021) 2971–2980; doi:10.1021/acs.jnatprod.1c00804

data_1565510
_publ_section_title
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 Sublyratins A-O, Labdane-Type Diterpenoids from <i>Croton sublyratus</i>.
;
_journal_issue                   11
_journal_name_full               'Journal of natural products'
_journal_page_first              2971
_journal_page_last               2980
_journal_paper_doi               10.1021/acs.jnatprod.1c00804
_journal_volume                  84
_journal_year                    2021
_chemical_absolute_configuration rmad
_chemical_formula_moiety         'C20 H30 O4'
_chemical_formula_sum            'C20 H30 O4'
_chemical_formula_weight         334.44
_space_group_crystal_system      monoclinic
_space_group_IT_number           4
_space_group_name_Hall           'P 2yb'
_space_group_name_H-M_alt        'P 1 21 1'
_atom_sites_solution_hydrogens   mixed
_atom_sites_solution_primary     dual
_audit_creation_date             2021-02-27
_audit_creation_method
;
Olex2 1.2
(compiled 2018.05.29 svn.r3508 for OlexSys, GUI svn.r5506)
;
_cell_angle_alpha                90
_cell_angle_beta                 101.625(2)
_cell_angle_gamma                90
_cell_formula_units_Z            4
_cell_length_a                   11.9469(4)
_cell_length_b                   12.1093(5)
_cell_length_c                   12.7326(3)
_cell_measurement_reflns_used    8886
_cell_measurement_temperature    170
_cell_measurement_theta_max      74.454
_cell_measurement_theta_min      3.545
_cell_volume                     1804.22(11)
_computing_cell_refinement       'SAINT V8.40A (?, 2016)'
_computing_data_reduction        'SAINT V8.40A (?, 2016)'
_computing_molecular_graphics    'Olex2 (Dolomanov et al., 2009)'
_computing_publication_material  'Olex2 (Dolomanov et al., 2009)'
_computing_structure_refinement  'ShelXL (Sheldrick, 2015)'
_computing_structure_solution    'ShelXT (Sheldrick, 2015)'
_diffrn_ambient_temperature      170.0
_diffrn_measured_fraction_theta_full 0.998
_diffrn_measured_fraction_theta_max 0.990
_diffrn_measurement_device_type  'Bruker D8 VENTURE'
_diffrn_measurement_method       '\f and \w scans'
_diffrn_radiation_type           CuK\a
_diffrn_radiation_wavelength     1.54178
_diffrn_reflns_av_R_equivalents  0.0398
_diffrn_reflns_av_unetI/netI     0.0456
_diffrn_reflns_Laue_measured_fraction_full 0.998
_diffrn_reflns_Laue_measured_fraction_max 0.990
_diffrn_reflns_limit_h_max       14
_diffrn_reflns_limit_h_min       -14
_diffrn_reflns_limit_k_max       13
_diffrn_reflns_limit_k_min       -14
_diffrn_reflns_limit_l_max       15
_diffrn_reflns_limit_l_min       -15
_diffrn_reflns_number            16397
_diffrn_reflns_point_group_measured_fraction_full 0.891
_diffrn_reflns_point_group_measured_fraction_max 0.866
_diffrn_reflns_theta_full        67.679
_diffrn_reflns_theta_max         74.608
_diffrn_reflns_theta_min         3.544
_diffrn_standards_number         0
_exptl_absorpt_coefficient_mu    0.673
_exptl_absorpt_correction_T_max  0.7538
_exptl_absorpt_correction_T_min  0.6688
_exptl_absorpt_correction_type   multi-scan
_exptl_absorpt_process_details
'SADABS-2016/2 (Bruker,2016/2) was used for absorption correction. wR2(int) was 0.1178 before and 0.0605 after correction. The Ratio of minimum to maximum transmission is 0.8872. The \l/2 correction factor is Not present.'
_exptl_crystal_colour            colourless
_exptl_crystal_colour_primary    colourless
_exptl_crystal_density_diffrn    1.231
_exptl_crystal_description       block
_exptl_crystal_F_000             728
_exptl_crystal_size_max          0.15
_exptl_crystal_size_mid          0.08
_exptl_crystal_size_min          0.05
_refine_diff_density_max         0.228
_refine_diff_density_min         -0.191
_refine_diff_density_rms         0.040
_refine_ls_abs_structure_details
;
 Flack x determined using 2168 quotients [(I+)-(I-)]/[(I+)+(I-)]
 (Parsons, Flack and Wagner, Acta Cryst. B69 (2013) 249-259).
;
_refine_ls_abs_structure_Flack   0.08(11)
_refine_ls_extinction_method     none
_refine_ls_goodness_of_fit_ref   1.027
_refine_ls_hydrogen_treatment    mixed
_refine_ls_matrix_type           full
_refine_ls_number_parameters     448
_refine_ls_number_reflns         6391
_refine_ls_number_restraints     1
_refine_ls_restrained_S_all      1.027
_refine_ls_R_factor_all          0.0432
_refine_ls_R_factor_gt           0.0375
_refine_ls_shift/su_max          0.000
_refine_ls_shift/su_mean         0.000
_refine_ls_structure_factor_coef Fsqd
_refine_ls_weighting_details
'w=1/[\s^2^(Fo^2^)+(0.0480P)^2^+0.1479P] where P=(Fo^2^+2Fc^2^)/3'
_refine_ls_weighting_scheme      calc
_refine_ls_wR_factor_gt          0.0877
_refine_ls_wR_factor_ref         0.0917
_reflns_Friedel_coverage         0.668
_reflns_Friedel_fraction_full    0.773
_reflns_Friedel_fraction_max     0.729
_reflns_number_gt                5936
_reflns_number_total             6391
_reflns_threshold_expression     'I > 2\s(I)'
_cod_data_source_file            np1c00804_si_007.cif
_cod_data_source_block           cu_2021197_0m
_cod_database_code               1565510
_shelx_shelxl_version_number     2018/3
_shelx_estimated_absorpt_t_max   0.967
_shelx_estimated_absorpt_t_min   0.906
_olex2_refinement_description
;
1. Fixed Uiso
 At 1.2 times of:
  All C(H) groups, All C(H,H) groups
 At 1.5 times of:
  All C(H,H,H) groups, All O(H) groups
2.a Ternary CH refined with riding coordinates:
 C32(H32), C12(H12), C5(H5), C25(H25)
2.b Secondary CH2 refined with riding coordinates:
 C31(H31A,H31B), C3(H3A,H3B), C21(H21A,H21B), C26(H26A,H26B), C11(H11A,H11B),
 C1(H1A,H1B), C23(H23A,H23B), C22(H22A,H22B), C2(H2A,H2B), C6(H6A,H6B)
2.c Aromatic/amide H refined with riding coordinates:
 C14(H14), C34(H34), C27(H27), C7(H7)
2.d X=CH2 refined with riding coordinates:
 C15(H15A,H15B), C35(H35A,H35B)
2.e Idealised Me refined as rotating group:
 C40(H40A,H40B,H40C), C16(H16A,H16B,H16C), C36(H36A,H36B,H36C), C18(H18A,H18B,
 H18C), C39(H39A,H39B,H39C), C20(H20A,H20B,H20C), C19(H19A,H19B,H19C), C38(H38A,
 H38B,H38C)
2.f Idealised tetrahedral OH refined as rotating group:
 O8(H8), O5(H5A), O4(H4)
;
_olex2_submission_special_instructions 'No special instructions were received'