// File: /workspace/github_cpp_makefile_star2_O1/ncbi[P]amr/common.cpp
// Function: Common_sp::ShellApplication::initVar()
void ShellApplication::initVar () 
{
  ASSERT (tmp. empty ());  
  if (useTmp)
    tmp = makeTempDir ();
  
  stderr. quiet = getQuiet ();

  startTime = time (NULL);
  stderr << "Running: " << colorize_raw (getCommandLine (), Color::yellow, false, ! isRedirected (cerr)) << '\n';  

  // threads_max
  if (threadsUsed)
  {
    const size_t threads_max_max = get_threads_max_max ();
    if (threads_max > threads_max_max)
    {
      stderr << "The number of threads cannot be greater than " << threads_max_max << " on this computer" << '\n'
             << "The current number of threads is " << threads_max << ", reducing to " << threads_max_max << '\n';
      threads_max = threads_max_max;
    }
  }
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
subq $0x108, %rsp            # imm = 0x108
movq %rdi, %rbx
callq 0xa070
movl $0x0, (%rax)
cmpq $0x0, 0x170(%rbx)
jne 0x61246
cmpb $0x1, 0x160(%rbx)
jne 0x6103f
leaq 0x168(%rbx), %r14
leaq 0x8(%rsp), %r15
movq %r15, %rdi
callq 0x3b983
movq %r14, %rdi
movq %r15, %rsi
callq 0xa6e0
movq (%r15), %rdi
leaq 0x18(%rsp), %rax
cmpq %rax, %rdi
je 0x6103f
movq 0x18(%rsp), %rsi
incq %rsi
callq 0xa5a0
cmpq $0x1, 0x4f571(%rip)     # 0xb05b8
jne 0x6104d
xorl %eax, %eax
jmp 0x6105c
callq 0xa500
cmpq 0x4fa6f(%rip), %rax     # 0xb0ac8
setne %al
cmpl $0x0, 0x4faa9(%rip)     # 0xb0b0c
sets %cl
orb %al, %cl
leaq 0x1b8(%rbx), %r14
movb %cl, 0x1b8(%rbx)
xorl %edi, %edi
callq 0xa550
movq %rax, 0x1c0(%rbx)
leaq 0x2da36(%rip), %rsi     # 0x8eac0
movq %r14, %rdi
callq 0x2f946
movq %rax, %r15
leaq 0x28(%rsp), %r12
movq %r12, %rdi
callq 0x3386c
movq 0x4eef7(%rip), %rax     # 0xaffa0
movq (%rax), %rdi
callq 0xa5f0
movl %eax, %edi
callq 0xa9f0
xorl %r8d, %r8d
testl %eax, %eax
setne %r8b
leaq 0x8(%rsp), %rdi
movq %r12, %rsi
movl $0x21, %edx
xorl %ecx, %ecx
callq 0x2f316
cmpb $0x0, (%r15)
jne 0x610f1
movq 0x8(%rsp), %rsi
movq 0x10(%rsp), %rdx
movq 0x4eef4(%rip), %rdi     # 0xaffe0
callq 0xa640
cmpb $0x0, (%r15)
jne 0x61110
leaq 0x48(%rsp), %rsi
movb $0xa, (%rsi)
movq 0x4eeda(%rip), %rdi     # 0xaffe0
movl $0x1, %edx
callq 0xa640
leaq 0x18(%rsp), %rax
movq -0x10(%rax), %rdi
cmpq %rax, %rdi
je 0x6112b
movq 0x18(%rsp), %rsi
incq %rsi
callq 0xa5a0
leaq 0x38(%rsp), %rax
movq -0x10(%rax), %rdi
cmpq %rax, %rdi
je 0x61146
movq 0x38(%rsp), %rsi
incq %rsi
callq 0xa5a0
cmpb $0x1, 0xaa(%rbx)
jne 0x61234
callq 0x33b9c
cmpq %rax, 0x4f459(%rip)     # 0xb05b8
jbe 0x61234
movq %rax, %rbx
leaq 0x2d95b(%rip), %rsi     # 0x8eaca
movq %r14, %rdi
callq 0x65fb2
movq %rax, %r14
cmpb $0x0, (%rax)
jne 0x6118e
movq 0x4ee5a(%rip), %rdi     # 0xaffe0
movq %rbx, %rsi
callq 0xa3e0
leaq 0x2d963(%rip), %rsi     # 0x8eaf8
movq %r14, %rdi
callq 0x65fe6
movq %rax, %r14
cmpb $0x0, (%rax)
jne 0x611be
leaq 0x8(%rsp), %rsi
movb $0xa, (%rsi)
movq 0x4ee2c(%rip), %rdi     # 0xaffe0
movl $0x1, %edx
callq 0xa640
leaq 0x2d945(%rip), %rsi     # 0x8eb0a
movq %r14, %rdi
callq 0x6601a
movq %rax, %r14
cmpb $0x0, (%rax)
jne 0x611e8
movq 0x4f3dc(%rip), %rsi     # 0xb05b8
movq 0x4edfd(%rip), %rdi     # 0xaffe0
callq 0xa3e0
leaq 0x2d93d(%rip), %rsi     # 0x8eb2c
movq %r14, %rdi
callq 0x6604e
movq %rax, %r14
cmpb $0x0, (%rax)
jne 0x6120e
movq 0x4edda(%rip), %rdi     # 0xaffe0
movq %rbx, %rsi
callq 0xa3e0
cmpb $0x0, (%r14)
jne 0x6122d
leaq 0x8(%rsp), %rsi
movb $0xa, (%rsi)
movq 0x4edbd(%rip), %rdi     # 0xaffe0
movl $0x1, %edx
callq 0xa640
movq %rbx, 0x4f384(%rip)     # 0xb05b8
addq $0x108, %rsp            # imm = 0x108
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
retq
callq 0xa6b0
testl %eax, %eax
jne 0x612de
leaq 0xb8(%rsp), %r14
movq %r14, -0x10(%r14)
leaq 0x2b6d0(%rip), %rsi     # 0x8c936
leaq 0x2b6dc(%rip), %rdx     # 0x8c949
leaq 0xa8(%rsp), %rdi
callq 0x2fdd8
leaq 0xc8(%rsp), %rdi
movl $0x10d7, %esi           # imm = 0x10D7
callq 0x2d60a
leaq 0xe8(%rsp), %rdi
leaq 0xa8(%rsp), %rsi
leaq 0xc8(%rsp), %rdx
callq 0x2d562
leaq 0x29935(%rip), %rsi     # 0x8abe5
leaq 0xe8(%rsp), %rdi
callq 0xaac0
leaq 0x58(%rsp), %r15
movq %r15, -0x10(%r15)
movq (%rax), %rdx
movq %rax, %rcx
addq $0x10, %rcx
cmpq %rcx, %rdx
jne 0x612e8
movups (%rcx), %xmm0
movups %xmm0, (%r15)
jmp 0x612f5
movl $0x1, %edi
callq 0xa6c0
movq %rdx, 0x48(%rsp)
movq (%rcx), %rdx
movq %rdx, 0x58(%rsp)
movq 0x8(%rax), %rdx
movq %rdx, 0x50(%rsp)
movq %rcx, (%rax)
movq $0x0, 0x8(%rax)
movb $0x0, 0x10(%rax)
leaq 0x98(%rsp), %r12
movq %r12, -0x10(%r12)
leaq 0x2d76b(%rip), %rsi     # 0x8ea8c
leaq 0x2d797(%rip), %rdx     # 0x8eabf
leaq 0x88(%rsp), %rdi
callq 0x2fdd8
leaq 0x2b5f7(%rip), %rsi     # 0x8c933
leaq 0x88(%rsp), %rdi
callq 0xaac0
leaq 0x78(%rsp), %r13
movq %r13, -0x10(%r13)
movq (%rax), %rdx
movq %rax, %rcx
addq $0x10, %rcx
cmpq %rcx, %rdx
jne 0x6136b
movups (%rcx), %xmm0
movups %xmm0, (%r13)
jmp 0x61378
movq %rdx, 0x68(%rsp)
movq (%rcx), %rdx
movq %rdx, 0x78(%rsp)
movq 0x8(%rax), %rsi
leaq 0x68(%rsp), %rdx
movq %rsi, 0x8(%rdx)
movq %rcx, (%rax)
movq $0x0, 0x8(%rax)
movb $0x0, 0x10(%rax)
leaq 0x28(%rsp), %rdi
leaq 0x48(%rsp), %rsi
callq 0x2d562
leaq 0x2d954(%rip), %rsi     # 0x8ecfe
leaq 0x28(%rsp), %rdi
callq 0xaac0
leaq 0x18(%rsp), %rbp
movq %rbp, -0x10(%rbp)
movq (%rax), %rdx
movq %rax, %rcx
addq $0x10, %rcx
cmpq %rcx, %rdx
jne 0x613d5
movups (%rcx), %xmm0
movups %xmm0, (%rbp)
jmp 0x613e2
movq %rdx, 0x8(%rsp)
movq (%rcx), %rdx
movq %rdx, 0x18(%rsp)
movq 0x8(%rax), %rdx
leaq 0x8(%rsp), %rdi
movq %rdx, 0x8(%rdi)
movq %rcx, (%rax)
movq $0x0, 0x8(%rax)
movb $0x0, 0x10(%rax)
callq 0x3523b
movq %rax, %rbx
movq 0x8(%rsp), %rdi
cmpq %rbp, %rdi
je 0x61422
movq 0x18(%rsp), %rsi
incq %rsi
callq 0xa5a0
jmp 0x61422
movq %rax, %rbx
leaq 0x38(%rsp), %rax
movq -0x10(%rax), %rdi
cmpq %rax, %rdi
je 0x61442
movq 0x38(%rsp), %rsi
incq %rsi
callq 0xa5a0
jmp 0x61442
movq %rax, %rbx
movq 0x68(%rsp), %rdi
cmpq %r13, %rdi
je 0x6145e
movq 0x78(%rsp), %rsi
incq %rsi
callq 0xa5a0
jmp 0x6145e
movq %rax, %rbx
movq 0x88(%rsp), %rdi
cmpq %r12, %rdi
je 0x61480
movq 0x98(%rsp), %rsi
incq %rsi
callq 0xa5a0
jmp 0x61480
movq %rax, %rbx
movq 0x48(%rsp), %rdi
cmpq %r15, %rdi
je 0x6149c
movq 0x58(%rsp), %rsi
incq %rsi
callq 0xa5a0
jmp 0x6149c
movq %rax, %rbx
leaq 0xf8(%rsp), %rax
movq -0x10(%rax), %rdi
cmpq %rax, %rdi
je 0x614c2
movq 0xf8(%rsp), %rsi
incq %rsi
callq 0xa5a0
jmp 0x614c2
movq %rax, %rbx
leaq 0xd8(%rsp), %rax
movq -0x10(%rax), %rdi
cmpq %rax, %rdi
je 0x614e8
movq 0xd8(%rsp), %rsi
incq %rsi
callq 0xa5a0
jmp 0x614e8
movq %rax, %rbx
movq 0xa8(%rsp), %rdi
cmpq %r14, %rdi
je 0x61544
movq 0xb8(%rsp), %rsi
jmp 0x6153c
movq %rax, %rbx
jmp 0x61544
jmp 0x61506
movq %rax, %rbx
leaq 0x18(%rsp), %rax
movq -0x10(%rax), %rdi
cmpq %rax, %rdi
je 0x61529
movq 0x18(%rsp), %rsi
incq %rsi
callq 0xa5a0
jmp 0x61529
movq %rax, %rbx
leaq 0x38(%rsp), %rax
movq -0x10(%rax), %rdi
cmpq %rax, %rdi
je 0x61544
movq 0x38(%rsp), %rsi
incq %rsi
callq 0xa5a0
movq %rbx, %rdi
callq 0xaa10