// File: chhylp123[P]hifiasm/Correct.cpp
// Function: align_ul_ed_post(overlap_region*, ul_idx_t const*, hpc_t*, char*, char*, char*, Correct_dumy*, double, long, double, void*)
uint32_t align_ul_ed_post(overlap_region *z, const ul_idx_t *uref, hpc_t *hpc_g, char* qstr, char *tstr, char *tstr_1, 
Correct_dumy* dumy, double e_rate, int64_t w_l, double ovlp_cut, void *km)
{
    int64_t q_s, q_e, nw, k, q_l, t_tot_l, sec_check = (uref&&(!hpc_g))?1:0;
    int64_t aux_beg, aux_end, t_s, thre, aln_l, t_pri_l, t_end;
    char *q_string, *t_string; unsigned int error;
    z->w_list.n = 0; z->is_match = 0; z->align_length = 0;
    nw = get_num_wins(z->x_pos_s, z->x_pos_e+1, w_l);
    get_win_se_by_normalize_xs(z, (z->x_pos_s/w_l)*w_l, w_l, &q_s, &q_e);
    for (k = 0; k < nw; k++) {
        aux_beg = aux_end = 0; q_l = 1 + q_e - q_s;
        thre = q_l*e_rate; thre = Adjust_Threshold(thre, q_l);
        if(thre > THRESHOLD_MAX_SIZE) thre = THRESHOLD_MAX_SIZE;
        ///offset of y
        t_s = (q_s - z->x_pos_s) + z->y_pos_s;
        t_s += y_start_offset(q_s, &(z->f_cigar));

        aln_l = q_l + (thre<<1); t_tot_l = hpc_g?hpc_len(*hpc_g, z->y_id):uref->ug->u.a[z->y_id].len;
        if(init_waln(thre, t_s, t_tot_l, aln_l, &aux_beg, &aux_end, &t_s, &t_pri_l)) {
            q_string = qstr+q_s; 
            t_string = return_str_seq(tstr, t_s, t_pri_l, z->y_pos_strand, hpc_g, uref, z->y_id, aux_beg, aux_end);

            t_end = Reserve_Banded_BPM(t_string, aln_l, q_string, q_l, thre, &error);
            // int32_t debug_t_end, debug_error;
            // debug_t_end = ed_band_cal_semi(t_string, aln_l, q_string, q_l, thre, &debug_error);
            // if((t_end != debug_t_end) || (t_end >= 0 && debug_t_end >= 0 && debug_error != (int32_t)error)) {
            //     fprintf(stderr, "[M::%s] debug_error->%d, error->%d\n", __func__, debug_error, error);
            // }
            

            if (error!=((unsigned int)-1)) {
                ///t_s do not have aux_beg, while t_s + t_end (aka, te) has 
                if(!push_wlst(uref, hpc_g, NULL, z, qstr, tstr, tstr_1, dumy, q_s, q_e, t_s, t_s + t_end, 
                                        t_tot_l, error, aux_beg, aux_end, thre, e_rate, w_l, sec_check, ovlp_cut, km)) {
                    return 0;
                }
                // append_window_list(z, q_s, q_e, t_s, t_s + t_end, error, aux_beg, aux_end, thre, w_l, km);
            }
        }
        q_s = q_e + 1; q_e = q_s + w_l - 1; 
        if(q_e >= (int64_t)z->x_pos_e) q_e = z->x_pos_e;
    }

    if((!simi_pass(z->x_pos_e+1-z->x_pos_s, z->align_length, 0, ovlp_cut, &e_rate)) &&
        (!simi_pass(z->x_pos_e+1-z->x_pos_s, z->align_length, sec_check, ovlp_cut, NULL))) return 0;
    return 1;
}

// Assembly:
pushq %rbp
movq %rsp, %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
subq $0x188, %rsp            # imm = 0x188
movq 0x20(%rbp), %rax
movq 0x18(%rbp), %rax
movq 0x10(%rbp), %rax
movq %rdi, -0x38(%rbp)
movq %rsi, -0x40(%rbp)
movq %rdx, -0x48(%rbp)
movq %rcx, -0x50(%rbp)
movq %r8, -0x58(%rbp)
movq %r9, -0x60(%rbp)
movsd %xmm0, -0x68(%rbp)
movsd %xmm1, -0x70(%rbp)
xorl %eax, %eax
cmpq $0x0, -0x40(%rbp)
movb %al, -0xf5(%rbp)
je 0x4ea91
cmpq $0x0, -0x48(%rbp)
setne %al
xorb $-0x1, %al
movb %al, -0xf5(%rbp)
movb -0xf5(%rbp), %dl
xorl %eax, %eax
movl $0x1, %ecx
testb $0x1, %dl
cmovnel %ecx, %eax
cltq
movq %rax, -0xa8(%rbp)
movq -0x38(%rbp), %rax
movq $0x0, 0x48(%rax)
movq -0x38(%rbp), %rax
movb $0x0, 0x2c(%rax)
movq -0x38(%rbp), %rax
movl $0x0, 0x28(%rax)
movq -0x38(%rbp), %rax
movl 0x4(%rax), %eax
movl %eax, %edi
movq -0x38(%rbp), %rax
movl 0x8(%rax), %eax
addl $0x1, %eax
movl %eax, %eax
movl %eax, %esi
movq 0x18(%rbp), %rdx
callq 0x340c0
movq %rax, -0x88(%rbp)
movq -0x38(%rbp), %rdi
movq -0x38(%rbp), %rax
movl 0x4(%rax), %eax
cqto
idivq 0x18(%rbp)
movq %rax, %rsi
imulq 0x18(%rbp), %rsi
movq 0x18(%rbp), %rdx
leaq -0x78(%rbp), %rcx
leaq -0x80(%rbp), %r8
callq 0x9e0f0
movq $0x0, -0x90(%rbp)
movq -0x90(%rbp), %rax
cmpq -0x88(%rbp), %rax
jge 0x4ef13
movq $0x0, -0xb8(%rbp)
movq $0x0, -0xb0(%rbp)
movq -0x80(%rbp), %rax
addq $0x1, %rax
subq -0x78(%rbp), %rax
movq %rax, -0x98(%rbp)
cvtsi2sdq -0x98(%rbp), %xmm0
mulsd -0x68(%rbp), %xmm0
cvttsd2si %xmm0, %rax
movq %rax, -0xc8(%rbp)
cmpq $0x0, -0xc8(%rbp)
jne 0x4eba1
cmpq $0x4, -0x98(%rbp)
jl 0x4eba1
movl $0x1, %eax
movq %rax, -0x100(%rbp)
jmp 0x4ebaf
movq -0xc8(%rbp), %rax
movq %rax, -0x100(%rbp)
movq -0x100(%rbp), %rax
movq %rax, -0xc8(%rbp)
cmpq $0x1f, -0xc8(%rbp)
jle 0x4ebd2
movq $0x1f, -0xc8(%rbp)
movq -0x78(%rbp), %rax
movq -0x38(%rbp), %rcx
movl 0x4(%rcx), %ecx
subq %rcx, %rax
movq -0x38(%rbp), %rcx
movl 0x14(%rcx), %ecx
addq %rcx, %rax
movq %rax, -0xc0(%rbp)
movq -0x78(%rbp), %rdi
movq -0x38(%rbp), %rsi
addq $0x38, %rsi
callq 0x331a0
addq -0xc0(%rbp), %rax
movq %rax, -0xc0(%rbp)
movq -0x98(%rbp), %rax
movq -0xc8(%rbp), %rcx
shlq %rcx
addq %rcx, %rax
movq %rax, -0xd0(%rbp)
cmpq $0x0, -0x48(%rbp)
je 0x4ec5c
movq -0x48(%rbp), %rax
movq (%rax), %rax
movq 0x10(%rax), %rax
movq -0x38(%rbp), %rcx
movl 0x10(%rcx), %ecx
imulq $0x28, %rcx, %rcx
addq %rcx, %rax
movl (%rax), %eax
andl $0x7fffffff, %eax       # imm = 0x7FFFFFFF
sarl %eax
movl %eax, -0x104(%rbp)
jmp 0x4ec82
movq -0x40(%rbp), %rax
movq (%rax), %rax
movq 0x10(%rax), %rax
movq -0x38(%rbp), %rcx
movl 0x10(%rcx), %ecx
imulq $0x28, %rcx, %rcx
addq %rcx, %rax
movl (%rax), %eax
andl $0x7fffffff, %eax       # imm = 0x7FFFFFFF
movl %eax, -0x104(%rbp)
movl -0x104(%rbp), %eax
cltq
movq %rax, -0xa0(%rbp)
movq -0xc8(%rbp), %rdi
movq -0xc0(%rbp), %rsi
movq -0xa0(%rbp), %rdx
movq -0xd0(%rbp), %rcx
leaq -0xb0(%rbp), %r8
leaq -0xb8(%rbp), %r9
leaq -0xc0(%rbp), %r10
leaq -0xd8(%rbp), %rax
movq %r10, (%rsp)
movq %rax, 0x8(%rsp)
callq 0x33f90
cmpl $0x0, %eax
je 0x4eec3
movq -0x50(%rbp), %rax
addq -0x78(%rbp), %rax
movq %rax, -0xe8(%rbp)
movq -0x58(%rbp), %rdi
movq -0xc0(%rbp), %rsi
movq -0xd8(%rbp), %rdx
movq -0x38(%rbp), %rax
movl 0x1c(%rax), %eax
movb %al, %cl
movq -0x48(%rbp), %r8
movq -0x40(%rbp), %r9
movq -0x38(%rbp), %rax
movl 0x10(%rax), %eax
movl %eax, %r11d
movq -0xb0(%rbp), %r10
movq -0xb8(%rbp), %rax
movzbl %cl, %ecx
movq %r11, (%rsp)
movq %r10, 0x8(%rsp)
movq %rax, 0x10(%rsp)
callq 0xa71f0
movq %rax, -0xf0(%rbp)
movq -0xf0(%rbp), %rdi
movq -0xd0(%rbp), %rax
movl %eax, %esi
movq -0xe8(%rbp), %rdx
movq -0x98(%rbp), %rax
movl %eax, %ecx
movq -0xc8(%rbp), %rax
leaq -0xf4(%rbp), %r9
movzwl %ax, %r8d
callq 0x9c2b0
cltq
movq %rax, -0xe0(%rbp)
cmpl $-0x1, -0xf4(%rbp)
je 0x4eec1
movq -0x40(%rbp), %rdi
movq -0x48(%rbp), %rsi
movq -0x38(%rbp), %rcx
movq -0x50(%rbp), %r8
movq -0x58(%rbp), %r9
movq -0x60(%rbp), %rax
movq 0x10(%rbp), %rdx
movq %rdx, -0x138(%rbp)
movq -0x78(%rbp), %rdx
movq %rdx, -0x130(%rbp)
movq -0x80(%rbp), %rdx
movq %rdx, -0x128(%rbp)
movq -0xc0(%rbp), %rdx
movq %rdx, -0x120(%rbp)
movq -0xc0(%rbp), %rdx
addq -0xe0(%rbp), %rdx
movq %rdx, -0x118(%rbp)
movq -0xa0(%rbp), %r13
movl -0xf4(%rbp), %edx
movl %edx, %r12d
movq -0xb0(%rbp), %r15
movq -0xb8(%rbp), %r14
movq -0xc8(%rbp), %rbx
movsd -0x68(%rbp), %xmm0
movq 0x18(%rbp), %r11
movq -0xa8(%rbp), %rdx
movl %edx, %r10d
movsd -0x70(%rbp), %xmm1
movq 0x20(%rbp), %rdx
movq %rdx, -0x110(%rbp)
xorl %edx, %edx
movq %rax, (%rsp)
movq -0x138(%rbp), %rax
movq %rax, 0x8(%rsp)
movq -0x130(%rbp), %rax
movq %rax, 0x10(%rsp)
movq -0x128(%rbp), %rax
movq %rax, 0x18(%rsp)
movq -0x120(%rbp), %rax
movq %rax, 0x20(%rsp)
movq -0x118(%rbp), %rax
movq %rax, 0x28(%rsp)
movq -0x110(%rbp), %rax
movq %r13, 0x30(%rsp)
movq %r12, 0x38(%rsp)
movq %r15, 0x40(%rsp)
movq %r14, 0x48(%rsp)
movq %rbx, 0x50(%rsp)
movq %r11, 0x58(%rsp)
movl %r10d, 0x60(%rsp)
movq %rax, 0x68(%rsp)
callq 0x4e160
cmpl $0x0, %eax
jne 0x4eebf
movl $0x0, -0x2c(%rbp)
jmp 0x4ef90
jmp 0x4eec1
jmp 0x4eec3
movq -0x80(%rbp), %rax
addq $0x1, %rax
movq %rax, -0x78(%rbp)
movq -0x78(%rbp), %rax
addq 0x18(%rbp), %rax
subq $0x1, %rax
movq %rax, -0x80(%rbp)
movq -0x80(%rbp), %rax
movq -0x38(%rbp), %rcx
movl 0x8(%rcx), %ecx
cmpq %rcx, %rax
jl 0x4eefa
movq -0x38(%rbp), %rax
movl 0x8(%rax), %eax
movq %rax, -0x80(%rbp)
jmp 0x4eefc
movq -0x90(%rbp), %rax
addq $0x1, %rax
movq %rax, -0x90(%rbp)
jmp 0x4eb28
movq -0x38(%rbp), %rax
movl 0x8(%rax), %eax
addl $0x1, %eax
movq -0x38(%rbp), %rcx
subl 0x4(%rcx), %eax
movl %eax, %eax
movl %eax, %edi
movq -0x38(%rbp), %rax
movl 0x28(%rax), %eax
movl %eax, %esi
movsd -0x70(%rbp), %xmm0
xorl %edx, %edx
leaq -0x68(%rbp), %rcx
callq 0xa7100
cmpl $0x0, %eax
jne 0x4ef89
movq -0x38(%rbp), %rax
movl 0x8(%rax), %eax
addl $0x1, %eax
movq -0x38(%rbp), %rcx
subl 0x4(%rcx), %eax
movl %eax, %eax
movl %eax, %edi
movq -0x38(%rbp), %rax
movl 0x28(%rax), %eax
movl %eax, %esi
movq -0xa8(%rbp), %rax
movl %eax, %edx
movsd -0x70(%rbp), %xmm0
xorl %eax, %eax
movl %eax, %ecx
callq 0xa7100
cmpl $0x0, %eax
jne 0x4ef89
movl $0x0, -0x2c(%rbp)
jmp 0x4ef90
movl $0x1, -0x2c(%rbp)
movl -0x2c(%rbp), %eax
addq $0x188, %rsp            # imm = 0x188
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
retq
nopw %cs:(%rax,%rax)