// File: /workspace/github_cpp_makefile_star2_O3/chhylp123[P]hifiasm/Correct.cpp
// Function: gen_extend_err(overlap_region*, ul_idx_t const*, hpc_t*, All_reads*, char*, char*, char*, Correct_dumy*, unsigned long*, long, double, double, double, long*)
double gen_extend_err(overlap_region *z, const ul_idx_t *uref, hpc_t *hpc_g, All_reads *rref, char* qstr, 
char *tstr, char *tstr_1, Correct_dumy* dumy, uint64_t *v_idx, int64_t block_s, double ovlp_cut, double e_rate, double e_max, int64_t *r_e)
{
    int64_t ovl, k, ce, an = z->w_list.n, tot_l, tot_e, ws, we, ql; 
    ovl = z->x_pos_e+1-z->x_pos_s; if(r_e) (*r_e) = INT64_MAX;
    if(!simi_pass(ovl, z->align_length, 0, ovlp_cut, &e_rate)) return DBL_MAX;
    // nw = get_num_wins(z->x_pos_s, z->x_pos_e+1, block_s);
    for (k = 0; k < an; k++) {
        if(z->w_list.a[k].clen) z->w_list.a[k].y_end -= z->w_list.a[k].extra_begin;
    }

    tot_l = tot_e = 0;
    for (k = an-1, ce = z->x_pos_e; k >= 0; k--) {
        // assert(k == 0 || z->w_list.a[k].x_end > z->w_list.a[k-1].x_start);//sorted
        tot_l += z->w_list.a[k].x_end + 1 - z->w_list.a[k].x_start;
        tot_e += z->w_list.a[k].error;///matched window

        we = z->w_list.a[k].x_end;
        while (we < ce) {
            ws = we+1;
            get_win_id_by_s(z, ws, block_s, &we);
            ql = we+1-ws; tot_l += ql; 
            tot_e += gen_extend_err_0(z, uref, hpc_g, rref, qstr, tstr, tstr_1, dumy, v_idx, block_s, e_rate, ws, we, k);
            if((e_max > 0) && (tot_e > (ovl*e_max))) return DBL_MAX;
        }
        ce = z->w_list.a[k].x_start-1;
        if((e_max > 0) && (tot_e > (ovl*e_max))) return DBL_MAX;
    }

    if(ce >= ((int64_t)z->x_pos_s)) {
        we = ((int64_t)z->x_pos_s)-1;
        while (we < ce) {
            ws = we+1;
            get_win_id_by_s(z, ws, block_s, &we);
            ql = we+1-ws; tot_l += ql; 
            tot_e += gen_extend_err_0(z, uref, hpc_g, rref, qstr, tstr, tstr_1, dumy, v_idx, block_s, e_rate, ws, we, k);
            if((e_max > 0) && (tot_e > (ovl*e_max))) return DBL_MAX;
        }
    }

    assert(tot_l == ovl); if(r_e) (*r_e) = tot_e;
    return (double)(tot_e)/(double)(tot_l);
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
subq $0x68, %rsp
movsd %xmm2, 0x8(%rsp)
movsd %xmm1, 0x20(%rsp)
movq %r9, 0x50(%rsp)
movq %r8, 0x48(%rsp)
movq %rcx, 0x40(%rsp)
movq %rdx, 0x38(%rsp)
movq %rsi, 0x30(%rsp)
movq %rdi, %rbp
movq 0xc0(%rsp), %rsi
movq 0x48(%rdi), %rdx
movl 0x4(%rdi), %ecx
movl 0x8(%rdi), %r14d
leal 0x1(%r14), %r8d
testq %rsi, %rsi
je 0x5c960
movabsq $0x7fffffffffffffff, %rax # imm = 0x7FFFFFFFFFFFFFFF
movq %rax, (%rsi)
movl 0x28(%rbp), %eax
testl %eax, %eax
sete %sil
cmpl %ecx, %r8d
sete %dil
orb %sil, %dil
movsd 0x1d4c95(%rip), %xmm0   # 0x231610
jne 0x5cc95
subl %ecx, %r8d
cvtsi2sd %r8, %xmm3
movsd 0x1d497f(%rip), %xmm2   # 0x231310
subsd 0x20(%rsp), %xmm2
mulsd %xmm3, %xmm2
movl %eax, %eax
xorps %xmm1, %xmm1
cvtsi2sd %rax, %xmm1
ucomisd %xmm2, %xmm1
jb 0x5cc95
testq %rdx, %rdx
movq %r8, 0x58(%rsp)
movsd %xmm3, 0x28(%rsp)
jle 0x5cb6d
movq 0x58(%rbp), %rax
addq $0xc, %rax
movq %rdx, %rsi
cmpl $0x0, 0x10(%rax)
je 0x5c9da
movswl 0x4(%rax), %edi
subl %edi, (%rax)
addq $0x20, %rax
decq %rsi
jne 0x5c9ce
leaq -0x1(%rdx), %rdi
testq %rdx, %rdx
jle 0x5cb7a
mulsd 0x8(%rsp), %xmm3
movsd %xmm3, 0x10(%rsp)
movq 0x58(%rbp), %rcx
xorl %eax, %eax
xorl %r12d, %r12d
movq %r12, %rdx
movq %rax, %rsi
movq %rdi, 0x18(%rsp)
movq %rdi, %r8
shlq $0x5, %r8
movslq 0x4(%rcx,%r8), %r15
movl (%rcx,%r8), %eax
movl %r15d, %edi
subl %eax, %edi
incl %edi
movslq %edi, %r12
addq %rdx, %r12
movq %r8, 0x60(%rsp)
movswq 0x14(%rcx,%r8), %rax
addq %rsi, %rax
cmpq %r15, %r14
jle 0x5cb0d
movq %rax, %rbx
leaq 0x1(%r15), %r10
movl 0x8(%rbp), %r13d
movl 0x4(%rbp), %ecx
movq %rcx, %rax
xorl %edx, %edx
movq 0xb8(%rsp), %r11
idivq %r11
subq %rdx, %rcx
movq %r10, %rax
subq %rcx, %rax
cqto
idivq %r11
incq %rax
imulq %r11, %rax
addq %rcx, %rax
decq %rax
cmpq %r13, %rax
cmovlq %rax, %r13
subq $0x8, %rsp
movq %rbp, %rdi
movq 0x38(%rsp), %rsi
movq 0x40(%rsp), %rdx
movq 0x48(%rsp), %rcx
movq 0x50(%rsp), %r8
movq 0x58(%rsp), %r9
movsd 0x28(%rsp), %xmm0
pushq 0x20(%rsp)
pushq %r13
pushq %r10
pushq %r11
pushq 0xd8(%rsp)
pushq 0xd8(%rsp)
pushq 0xd8(%rsp)
callq 0x5b99a
addq $0x40, %rsp
addq %rbx, %rax
movsd 0x8(%rsp), %xmm0
ucomisd 0x1d4b35(%rip), %xmm0   # 0x231618
xorps %xmm2, %xmm2
cvtsi2sd %rax, %xmm2
jbe 0x5caf9
ucomisd 0x10(%rsp), %xmm2
ja 0x5cc8d
subq %r15, %r12
addq %r13, %r12
movq %r13, %r15
cmpq %r14, %r13
jl 0x5ca44
jmp 0x5cb15
xorps %xmm2, %xmm2
cvtsi2sd %rax, %xmm2
movsd 0x8(%rsp), %xmm1
ucomisd 0x1d4af5(%rip), %xmm1   # 0x231618
movsd 0x1d4ae5(%rip), %xmm0   # 0x231610
jbe 0x5cb39
ucomisd 0x10(%rsp), %xmm2
ja 0x5cc95
movq 0x58(%rbp), %rcx
movq 0x60(%rsp), %rdx
movslq (%rcx,%rdx), %r14
decq %r14
movq 0x18(%rsp), %rsi
leaq -0x1(%rsi), %rdi
testq %rsi, %rsi
jg 0x5ca05
movl 0x4(%rbp), %ecx
movq $-0x1, %rdi
movsd 0x28(%rsp), %xmm3
jmp 0x5cb7f
decq %rdx
xorl %r12d, %r12d
xorl %eax, %eax
movq %rdx, %rdi
jmp 0x5cb7f
xorl %r12d, %r12d
xorl %eax, %eax
movl %ecx, %r13d
cmpq %r13, %r14
jl 0x5cc62
movq %rdi, 0x18(%rsp)
decq %r13
mulsd 0x8(%rsp), %xmm3
movsd %xmm3, 0x10(%rsp)
movq %rax, %rbx
leaq 0x1(%r13), %r10
movl 0x8(%rbp), %r15d
movl 0x4(%rbp), %ecx
movq %rcx, %rax
xorl %edx, %edx
movq 0xb8(%rsp), %r11
idivq %r11
subq %rdx, %rcx
movq %r10, %rax
subq %rcx, %rax
cqto
idivq %r11
incq %rax
imulq %r11, %rax
addq %rcx, %rax
decq %rax
cmpq %r15, %rax
cmovlq %rax, %r15
subq $0x8, %rsp
movq %rbp, %rdi
movq 0x38(%rsp), %rsi
movq 0x40(%rsp), %rdx
movq 0x48(%rsp), %rcx
movq 0x50(%rsp), %r8
movq 0x58(%rsp), %r9
movsd 0x28(%rsp), %xmm0
pushq 0x20(%rsp)
pushq %r15
pushq %r10
pushq %r11
pushq 0xd8(%rsp)
pushq 0xd8(%rsp)
pushq 0xd8(%rsp)
callq 0x5b99a
addq $0x40, %rsp
addq %rbx, %rax
movsd 0x8(%rsp), %xmm0
ucomisd 0x1d49da(%rip), %xmm0   # 0x231618
jbe 0x5cc50
xorps %xmm0, %xmm0
cvtsi2sd %rax, %xmm0
ucomisd 0x10(%rsp), %xmm0
ja 0x5cc8d
subq %r13, %r12
addq %r15, %r12
movq %r15, %r13
cmpq %r14, %r15
jl 0x5cb9f
cmpq 0x58(%rsp), %r12
jne 0x5cca4
movq 0xc0(%rsp), %rcx
testq %rcx, %rcx
movsd 0x28(%rsp), %xmm1
je 0x5cc7f
movq %rax, (%rcx)
xorps %xmm0, %xmm0
cvtsi2sd %rax, %xmm0
divsd %xmm1, %xmm0
jmp 0x5cc95
movsd 0x1d497b(%rip), %xmm0   # 0x231610
addq $0x68, %rsp
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
retq
leaq 0x1d56cd(%rip), %rdi    # 0x232378
leaq 0x1d4aa1(%rip), %rsi    # 0x231753
leaq 0x1d56cc(%rip), %rcx    # 0x232385
movl $0x3454, %edx           # imm = 0x3454
callq 0x2110