// File: /workspace/github_c_makefile_star2_O1/genometools[P]genometools/src/tools/gt_eval.c
// Function: gt_eval_option_parser_new
static GtOptionParser* gt_eval_option_parser_new(void *tool_arguments)
{
  EvalArguments *arguments = tool_arguments;
  GtOptionParser *op;
  GtOption *option, *ltroption, *ltrdeltaoption;
  gt_assert(arguments);

  op = gt_option_parser_new("reference_file prediction_file ",
                            "Compare annotation files and show "
                            "accuracy measures (prediction vs. reference).");

  /* -exondiff */
  option = gt_option_new_bool("exondiff", "show a diff for the exons",
                              &arguments->exondiff, false);
  gt_option_is_development_option(option);
  gt_option_parser_add_option(op, option);

  /* -exondiffcollapsed */
  option = gt_option_new_bool("exondiffcollapsed", "show a diff for the "
                              "collapsed exons", &arguments->exondiffcollapsed,
                              false);
  gt_option_is_development_option(option);
  gt_option_parser_add_option(op, option);

  /* -nuc */
  option = gt_option_new_bool("nuc",
                              "evaluate nucleotide level (memory consumption "
                              "is proportional to the input file sizes)",
                              &arguments->nuceval, true);
  gt_option_parser_add_option(op, option);

  /* -ltr */
  ltroption = gt_option_new_bool("ltr", "evaluate a LTR retrotransposon "
                                 "prediction instead of a gene prediction\n"
                                 "(all LTR_retrotransposon elements are "
                                 "considered to have an undetermined strand)",
                                 &arguments->evalLTR, false);
  gt_option_parser_add_option(op, ltroption);

  /* -ltrdelta */
  ltrdeltaoption = gt_option_new_uword("ltrdelta", "set allowed delta for LTR "
                                       "borders to be considered equal",
                                       &arguments->LTRdelta, 20);
  gt_option_parser_add_option(op, ltrdeltaoption);

  /* -v */
  option = gt_option_new_verbose(&arguments->verbose);
  gt_option_parser_add_option(op, option);

  /* output file options */
  gt_output_file_info_register_options(arguments->ofi, op, &arguments->outfp);

  /* option implications */
  gt_option_imply(ltrdeltaoption, ltroption);

  /* set comment function */
  gt_option_parser_set_comment_func(op, gt_gtdata_show_help, NULL);

  /* set minimum and maximum number of arguments */
  gt_option_parser_set_min_max_args(op, 2, 2);

  return op;
}

// Assembly:
pushq %r15
pushq %r14
pushq %r12
pushq %rbx
pushq %rax
testq %rdi, %rdi
je 0xa8c86
movq %rdi, %r14
leaq 0x2ac56b(%rip), %rdi    # 0x3550a9
leaq 0x2ac584(%rip), %rsi    # 0x3550c9
callq 0x10cc4e
movq %rax, %rbx
leaq 0x1(%r14), %rdx
leaq 0x2ac5c1(%rip), %rdi    # 0x355119
leaq 0x2ac5c3(%rip), %rsi    # 0x355122
xorl %ecx, %ecx
callq 0x10f451
movq %rax, %r15
movq %rax, %rdi
callq 0x10fbef
movq %rbx, %rdi
movq %r15, %rsi
callq 0x10cd10
leaq 0x2(%r14), %rdx
leaq 0x2ac5b5(%rip), %rdi    # 0x35513c
leaq 0x2ac5c0(%rip), %rsi    # 0x35514e
xorl %ecx, %ecx
callq 0x10f451
movq %rax, %r15
movq %rax, %rdi
callq 0x10fbef
movq %rbx, %rdi
movq %r15, %rsi
callq 0x10cd10
leaq 0x3(%r14), %rdx
leaq 0x2ac5bc(%rip), %rdi    # 0x355172
leaq 0x2ac5b9(%rip), %rsi    # 0x355176
movl $0x1, %ecx
callq 0x10f451
movq %rbx, %rdi
movq %rax, %rsi
callq 0x10cd10
leaq 0x4(%r14), %rdx
leaq 0x3200fc(%rip), %rdi    # 0x3c8cd9
leaq 0x2ac5e9(%rip), %rsi    # 0x3551cd
xorl %ecx, %ecx
callq 0x10f451
movq %rax, %r15
movq %rbx, %rdi
movq %rax, %rsi
callq 0x10cd10
leaq 0x8(%r14), %rdx
leaq 0x2ac661(%rip), %rdi    # 0x355265
leaq 0x2ac663(%rip), %rsi    # 0x35526e
movl $0x14, %ecx
callq 0x10f4c7
movq %rax, %r12
movq %rbx, %rdi
movq %rax, %rsi
callq 0x10cd10
movq %r14, %rdi
callq 0x10f473
movq %rbx, %rdi
movq %rax, %rsi
callq 0x10cd10
movq 0x10(%r14), %rdi
addq $0x18, %r14
movq %rbx, %rsi
movq %r14, %rdx
callq 0x10ffa3
movq %r12, %rdi
movq %r15, %rsi
callq 0x10fbff
leaq 0xab241(%rip), %rsi     # 0x153e9c
movq %rbx, %rdi
xorl %edx, %edx
callq 0x10cd8d
movq %rbx, %rdi
movl $0x2, %esi
movl $0x2, %edx
callq 0x10d784
movq %rbx, %rax
addq $0x8, %rsp
popq %rbx
popq %r12
popq %r14
popq %r15
retq
callq 0x1a882
nop