// File: /workspace/github_c_makefile_star2_O1/zhou-lab[P]tbmate/htslib/faidx.c
// Function: fai_build
int fai_build(const char *fn)
{
    char *str;
    BGZF *bgzf;
    FILE *fp;
    faidx_t *fai;
    str = (char*)calloc(strlen(fn) + 5, 1);
    sprintf(str, "%s.fai", fn);
    bgzf = bgzf_open(fn, "r");
    if ( !bgzf ) {
        fprintf(stderr, "[fai_build] fail to open the FASTA file %s\n",fn);
        free(str);
        return -1;
    }
    if ( bgzf->is_compressed ) bgzf_index_build_init(bgzf);
    fai = fai_build_core(bgzf);
    if ( !fai )
    {
        if ( bgzf->is_compressed && bgzf->is_gzip ) fprintf(stderr,"Cannot index files compressed with gzip, please use bgzip\n");
        bgzf_close(bgzf);
        free(str);
        return -1;
    }
    if ( bgzf->is_compressed ) {
        if (bgzf_index_dump(bgzf, fn, ".gzi") < 0) {
            fprintf(stderr, "[fai_build] fail to make bgzf index %s.gzi\n", fn);
            fai_destroy(fai); free(str);
            return -1;
        }
    }
    if (bgzf_close(bgzf) < 0) {
        fprintf(stderr, "[fai_build] Error on closing %s\n", fn);
        fai_destroy(fai); free(str);
        return -1;
    }
    fp = fopen(str, "wb");
    if ( !fp ) {
        fprintf(stderr, "[fai_build] fail to write FASTA index %s\n",str);
        fai_destroy(fai); free(str);
        return -1;
    }
    fai_save(fai, fp);
    fclose(fp);
    free(str);
    fai_destroy(fai);
    return 0;
}

// Assembly:
pushq %r15
pushq %r14
pushq %r12
pushq %rbx
pushq %rax
movq %rdi, %r14
callq 0x3380
leaq 0x5(%rax), %rdi
movl $0x1, %esi
callq 0x36a0
movq %rax, %rbx
leaq 0x24c29(%rip), %rsi     # 0x4f1cb
movq %rax, %rdi
movq %r14, %rdx
xorl %eax, %eax
callq 0x3460
leaq 0x26aa7(%rip), %rsi     # 0x5105d
movq %r14, %rdi
callq 0x270a0
testq %rax, %rax
je 0x2a695
movq %rax, %r12
testb $0x60, 0x3(%rax)
je 0x2a5d8
movq %r12, %rdi
callq 0x2928f
movq %r12, %rdi
callq 0x29ce0
movq %rax, %r15
movl (%r12), %eax
testq %r15, %r15
je 0x2a65f
testl $0x60000000, %eax       # imm = 0x60000000
je 0x2a60d
leaq 0x24bd8(%rip), %rdx     # 0x4f1d2
movq %r12, %rdi
movq %r14, %rsi
callq 0x292c2
testl %eax, %eax
js 0x2a6d2
movq %r12, %rdi
callq 0x28afa
testl %eax, %eax
js 0x2a6b2
leaq 0x235be(%rip), %rsi     # 0x4dbe2
movq %rbx, %rdi
callq 0x3250
testq %rax, %rax
je 0x2a6c5
movq %rax, %r14
movq %r15, %rdi
movq %rax, %rsi
callq 0x2a407
movq %r14, %rdi
callq 0x36c0
movq %rbx, %rdi
callq 0x3370
movq %r15, %rdi
callq 0x2a38d
xorl %eax, %eax
jmp 0x2a689
testl $0x60000000, %eax       # imm = 0x60000000
sete %cl
testl %eax, %eax
setns %al
orb %cl, %al
je 0x2a6f7
movq %r12, %rdi
callq 0x28afa
movq %rbx, %rdi
callq 0x3370
movl $0xffffffff, %eax       # imm = 0xFFFFFFFF
addq $0x8, %rsp
popq %rbx
popq %r12
popq %r14
popq %r15
retq
movq 0x3394c(%rip), %rax     # 0x5dfe8
movq (%rax), %rdi
leaq 0x25c5e(%rip), %rsi     # 0x50304
movq %r14, %rdx
xorl %eax, %eax
callq 0x37e0
jmp 0x2a67c
movq 0x3392f(%rip), %rax     # 0x5dfe8
movq (%rax), %rdi
leaq 0x25cd4(%rip), %rsi     # 0x50397
jmp 0x2a6e3
movq %rbx, %rdi
movq %r15, %rsi
callq 0x4ba7
jmp 0x2a684
movq 0x3390f(%rip), %rax     # 0x5dfe8
movq (%rax), %rdi
leaq 0x25c88(%rip), %rsi     # 0x5036b
movq %r14, %rdx
xorl %eax, %eax
callq 0x37e0
movq %r15, %rdi
callq 0x2a38d
jmp 0x2a67c
callq 0x4be3
jmp 0x2a674