// File: /workspace/github_c_makefile_star2_O3/nh13[P]ksw/src/parasail/src/memory_avx2.c
// Function: parasail_profile_create_avx_256_16
parasail_profile_t * parasail_profile_create_avx_256_16(
        const char * const restrict s1, const int _s1Len,
        const parasail_matrix_t *matrix)
{
    int s1Len = 0;
    int32_t i = 0;
    int32_t j = 0;
    int32_t k = 0;
    int32_t segNum = 0;
    int32_t n = 0; /* number of amino acids in table */
    const int32_t segWidth = 16; /* number of values in vector unit */
    int32_t segLen = 0;
    __m256i* restrict vProfile = NULL;
    int32_t index = 0;
    parasail_profile_t *profile = NULL;

    PARASAIL_CHECK_NULL(matrix);
    /* s1 is ignored for pssm, required for square */
    if (matrix->type == PARASAIL_MATRIX_TYPE_SQUARE) {
        PARASAIL_CHECK_NULL(s1);
    }

    s1Len = matrix->type == PARASAIL_MATRIX_TYPE_SQUARE ? _s1Len : matrix->length;
    n = matrix->size;
    segLen = (s1Len + segWidth - 1) / segWidth;
    vProfile = parasail_memalign___m256i(32, n * segLen);
    if (!vProfile) return NULL;
    profile = parasail_profile_new(s1, s1Len, matrix);
    if (!profile) return NULL;

    for (k=0; k<n; ++k) {
        for (i=0; i<segLen; ++i) {
            __m256i_16_t t;
            j = i;
            for (segNum=0; segNum<segWidth; ++segNum) {
                if (matrix->type == PARASAIL_MATRIX_TYPE_SQUARE) {
                    t.v[segNum] = j >= s1Len ? 0 : matrix->matrix[n*k+matrix->mapper[(unsigned char)s1[j]]];
                }
                else {
                    t.v[segNum] = j >= s1Len ? 0 : matrix->matrix[n*j+matrix->mapper[(unsigned char)matrix->alphabet[k]]];
                }
                j += segLen;
            }
            _mm256_store_si256(&vProfile[index], t.m);
            ++index;
        }
    }

    profile->profile16.score = vProfile;
    profile->free = &parasail_free___m256i;
    return profile;
}

// Assembly:
pushq %rbp
movq %rsp, %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
andq $-0x20, %rsp
subq $0x80, %rsp
testq %rdx, %rdx
je 0x4f1cb6
movq %rdx, %rbx
movl 0x30(%rdx), %eax
testl %eax, %eax
setne %cl
testq %rdi, %rdi
setne %dl
orb %cl, %dl
je 0x4f1cbd
movl %esi, %r15d
movq %rdi, 0x20(%rsp)
testl %eax, %eax
je 0x4f1b48
movl 0x34(%rbx), %r15d
movl 0x18(%rbx), %ecx
leal 0xf(%r15), %eax
leal 0x1e(%r15), %r13d
testl %eax, %eax
cmovnsl %eax, %r13d
sarl $0x4, %r13d
movl %r13d, %eax
movq %rcx, 0x10(%rsp)
imull %ecx, %eax
movslq %eax, %rsi
shlq $0x5, %rsi
movl $0x20, %edi
callq 0x20a5b8
movq %rax, 0x18(%rsp)
testq %rax, %rax
je 0x4f1cc2
movq 0x20(%rsp), %rdi
movl %r15d, %esi
movq %rbx, %rdx
callq 0x20bbb5
testq %rax, %rax
je 0x4f1cc2
movq %rax, 0x28(%rsp)
cmpl $0x0, 0x10(%rsp)
jle 0x4f1c9b
cmpl $0x2, %r13d
movl $0x1, %eax
cmovgel %r13d, %eax
movq %rax, 0x30(%rsp)
movl %r13d, %edx
imull 0x10(%rsp), %r13d
xorl %esi, %esi
xorl %r10d, %r10d
testl %r15d, %r15d
jle 0x4f1c8d
movslq %r10d, %r10
movl %esi, %r8d
imull 0x10(%rsp), %r8d
xorl %r9d, %r9d
xorl %ecx, %ecx
movq %r10, 0x38(%rsp)
movl 0x30(%rbx), %r11d
movl %r9d, %r12d
movq %rcx, %r10
xorl %eax, %eax
testl %r11d, %r11d
je 0x4f1c1b
cmpl %r10d, %r15d
jle 0x4f1c43
movq 0x10(%rbx), %rdi
movq 0x38(%rbx), %r14
movzbl (%r14,%rsi), %r14d
movl (%rdi,%r14,4), %r14d
addl %r12d, %r14d
jmp 0x4f1c35
cmpl %r10d, %r15d
jle 0x4f1c43
movq 0x10(%rbx), %r14
movq 0x20(%rsp), %rdi
movzbl (%rdi,%r10), %edi
movl (%r14,%rdi,4), %r14d
addl %r8d, %r14d
movq 0x8(%rbx), %rdi
movslq %r14d, %r14
movzwl (%rdi,%r14,4), %r14d
jmp 0x4f1c46
xorl %r14d, %r14d
movw %r14w, 0x40(%rsp,%rax,2)
addq %rdx, %r10
incq %rax
addl %r13d, %r12d
cmpq $0x10, %rax
jne 0x4f1bfb
movq 0x38(%rsp), %r10
movq %r10, %rax
shlq $0x5, %rax
vmovaps 0x40(%rsp), %ymm0
movq 0x18(%rsp), %rdi
vmovaps %ymm0, (%rdi,%rax)
incq %r10
incq %rcx
addl 0x10(%rsp), %r9d
cmpq 0x30(%rsp), %rcx
jne 0x4f1bea
incq %rsi
cmpq 0x10(%rsp), %rsi
jne 0x4f1bd0
movq 0x28(%rsp), %rax
movq 0x18(%rsp), %rcx
movq %rcx, 0x30(%rax)
leaq -0x1b7(%rip), %rcx      # 0x4f1af9
movq %rcx, 0x78(%rax)
jmp 0x4f1cc4
callq 0x1e643f
jmp 0x4f1cc2
callq 0x1e6419
xorl %eax, %eax
leaq -0x28(%rbp), %rsp
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
vzeroupper
retq