// File: /workspace/github_cpp_makefile_star2_O2/BenLangmead[P]bowtie/bowtie_inspect.cpp
// Function: main
int main(int argc, char **argv) {
	try {
		string ebwtFile;  // read serialized Ebwt from this file
		string query;   // read query string(s) from this file
		EList<string> queries;
		string outfile; // write query results to this file
		argv0 = argv[0];
		parseOptions(argc, argv);
		if(showVersion) {
			cout << argv0 << " version " << BOWTIE_VERSION << endl;
			if(sizeof(void*) == 4) {
				cout << "32-bit" << endl;
			} else if(sizeof(void*) == 8) {
				cout << "64-bit" << endl;
			} else {
				cout << "Neither 32- nor 64-bit: sizeof(void*) = " << sizeof(void*) << endl;
			}
			cout << "Built on " << BUILD_HOST << endl;
			cout << BUILD_TIME << endl;
			cout << "Compiler: " << COMPILER_VERSION << endl;
			cout << "Options: " << COMPILER_OPTIONS << endl;
			cout << "Sizeof {int, long, long long, void*, size_t, off_t}: {"
				 << sizeof(int)
				 << ", " << sizeof(long) << ", " << sizeof(long long)
				 << ", " << sizeof(void *) << ", " << sizeof(size_t)
				 << ", " << sizeof(off_t) << "}" << endl;
			return 0;
		}

		// Get input filename
		if(optind >= argc) {
			cerr << "No index name given!" << endl;
			printUsage(cerr);
			return 1;
		}
		ebwtFile = argv[optind++];

		// Optionally summarize
		if(verbose) {
			cout << "Input ebwt file: \"" << ebwtFile << "\"" << endl;
			cout << "Output file: \"" << outfile << "\"" << endl;
			cout << "Local endianness: " << (currentlyBigEndian()? "big":"little") << endl;
#ifdef NDEBUG
			cout << "Assertions: disabled" << endl;
#else
			cout << "Assertions: enabled" << endl;
#endif
		}
		driver(ebwtFile, query);
		return 0;
	} catch(std::exception& e) {
		cerr << "Command: ";
		for(int i = 0; i < argc; i++) cerr << argv[i] << " ";
		cerr << endl;
		return 1;
	} catch(int e) {
		if(e != 0) {
			cerr << "Command: ";
			for(int i = 0; i < argc; i++) cerr << argv[i] << " ";
			cerr << endl;
		}
		return e;
	}
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
subq $0x818, %rsp            # imm = 0x818
leaq 0x60(%rsp), %rax
movq %rax, -0x10(%rax)
andq $0x0, -0x8(%rax)
leaq 0xc0(%rsp), %rcx
movq %rcx, -0x10(%rcx)
andq $0x0, -0x8(%rcx)
movq %rsi, %rbx
xorl %edx, %edx
movabsq $-0x100000000, %rsi     # imm = 0xFFFFFFFF00000000
movq %rsi, 0x30(%rsp)
andq $0x0, 0x38(%rsp)
movq $0x80, 0x40(%rsp)
andq $0x0, 0x48(%rsp)
leaq 0x80(%rsp), %rsi
movq %rsi, -0x10(%rsi)
andq $0x0, -0x8(%rsi)
movb %dl, (%rax)
movb %dl, (%rcx)
movb %dl, (%rsi)
movq (%rbx), %rax
movq %rax, 0x8(%rsp)
leaq 0xd0(%rsp), %r12
andl $0x0, (%r12)
movl %edi, %r14d
leaq 0x1ec66(%rip), %r13     # 0x2a699
leaq 0x28946(%rip), %rbp     # 0x34380
leaq 0x1c5ef(%rip), %r15     # 0x28030
movl %r14d, %edi
movq %rbx, %rsi
movq %r13, %rdx
movq %rbp, %rcx
movq %r12, %r8
callq 0x4570
leal -0x100(%rax), %ecx
cmpl $0x4, %ecx
jbe 0xba91
testl %eax, %eax
je 0xbaac
cmpl $0x61, %eax
je 0xbb04
cmpl $0x65, %eax
je 0xbaa3
cmpl $0x6e, %eax
je 0xbac5
cmpl $0x73, %eax
je 0xbaf8
cmpl $0x76, %eax
jne 0xbb4b
movl $0x1, 0x2a611(%rip)     # 0x360a0
jmp 0xba41
movslq (%r15,%rcx,4), %rax
addq %r15, %rax
jmpq *%rax
movb $0x1, 0x2a628(%rip)     # 0x360c9
jmp 0xba41
movb $0x1, 0x2a620(%rip)     # 0x360ca
jmp 0xba41
movslq 0xd0(%rsp), %rax
shlq $0x5, %rax
cmpq $0x0, 0x10(%rax,%rbp)
jne 0xba41
jmp 0xc07c
movb $0x1, 0x2a600(%rip)     # 0x360cc
jmp 0xba41
movb $0x1, 0x2a5f0(%rip)     # 0x360c8
jmp 0xba41
movq 0x284a4(%rip), %rax     # 0x33f88
movq (%rax), %rsi
leaq 0x2a5ba(%rip), %rdi     # 0x360a8
callq 0x4670
jmp 0xba41
movb $0x1, 0x2a5d1(%rip)     # 0x360d0
jmp 0xba41
andq $0x0, 0x2a0(%rsp)
movq 0x28474(%rip), %rax     # 0x33f88
movq (%rax), %rdi
leaq 0x2a0(%rsp), %rsi
pushq $0xa
popq %rdx
callq 0x4460
cmpq $0x0, 0x2a0(%rsp)
je 0xc061
cmpq $-0x2, %rax
jle 0xc061
movl %eax, 0x2882a(%rip)     # 0x34370
jmp 0xba41
cmpl $-0x1, %eax
jne 0xc04c
cmpb $0x1, 0x2a56e(%rip)     # 0x360c9
jne 0xbd0a
movq 0x28450(%rip), %rdi     # 0x33fb8
movq 0x8(%rsp), %rsi
callq 0x42d0
leaq 0x1d238(%rip), %rsi     # 0x28db1
movq %rax, %rdi
callq 0x42d0
leaq 0x1d233(%rip), %rsi     # 0x28dbb
movq %rax, %rdi
callq 0x42d0
movq %rax, %rdi
callq 0x4130
movq 0x28419(%rip), %rdi     # 0x33fb8
leaq 0x1d21b(%rip), %rsi     # 0x28dc1
callq 0x42d0
movq %rax, %rdi
callq 0x4130
movq 0x283fe(%rip), %rdi     # 0x33fb8
leaq 0x1d207(%rip), %rsi     # 0x28dc8
callq 0x42d0
leaq 0x1d205(%rip), %rsi     # 0x28dd2
movq %rax, %rdi
callq 0x42d0
movq %rax, %rdi
callq 0x4130
movq 0x283d4(%rip), %rdi     # 0x33fb8
leaq 0x1d1f4(%rip), %rsi     # 0x28ddf
callq 0x42d0
movq %rax, %rdi
callq 0x4130
movq 0x283b9(%rip), %rdi     # 0x33fb8
leaq 0x1d1ed(%rip), %rsi     # 0x28df3
callq 0x42d0
leaq 0x1d1ec(%rip), %rsi     # 0x28dfe
movq %rax, %rdi
callq 0x42d0
movq %rax, %rdi
callq 0x4130
movq 0x2838f(%rip), %rdi     # 0x33fb8
leaq 0x1d22a(%rip), %rsi     # 0x28e5a
callq 0x42d0
leaq 0x1d228(%rip), %rsi     # 0x28e64
movq %rax, %rdi
callq 0x42d0
movq %rax, %rdi
callq 0x4130
movq 0x28365(%rip), %rdi     # 0x33fb8
leaq 0x1d246(%rip), %rsi     # 0x28ea0
callq 0x42d0
pushq $0x4
popq %rsi
movq %rax, %rdi
callq 0x41a0
leaq 0x1ca89(%rip), %rsi     # 0x286fa
movq %rax, %rdi
callq 0x42d0
pushq $0x8
popq %rsi
movq %rax, %rdi
callq 0x41a0
leaq 0x1ca6f(%rip), %rsi     # 0x286fa
movq %rax, %rdi
callq 0x42d0
pushq $0x8
popq %rsi
movq %rax, %rdi
callq 0x41a0
leaq 0x1ca55(%rip), %rsi     # 0x286fa
movq %rax, %rdi
callq 0x42d0
pushq $0x8
popq %rsi
movq %rax, %rdi
callq 0x41a0
leaq 0x1ca3b(%rip), %rsi     # 0x286fa
movq %rax, %rdi
callq 0x42d0
pushq $0x8
popq %rsi
movq %rax, %rdi
callq 0x41a0
leaq 0x1ca21(%rip), %rsi     # 0x286fa
movq %rax, %rdi
callq 0x42d0
pushq $0x8
popq %rsi
movq %rax, %rdi
callq 0x41a0
leaq 0x1c48c(%rip), %rsi     # 0x2817f
movq %rax, %rdi
callq 0x42d0
xorl %ebp, %ebp
movq %rax, %rdi
callq 0x4130
jmp 0xc00d
movq 0x282b7(%rip), %rax     # 0x33fc8
movslq (%rax), %rcx
cmpl %r14d, %ecx
jge 0xbe52
leal 0x1(%rcx), %edx
movl %edx, (%rax)
movq (%rbx,%rcx,8), %rsi
leaq 0x50(%rsp), %rdi
callq 0x4670
cmpl $0x0, 0x2a369(%rip)     # 0x360a0
je 0xbdf0
movq 0x28274(%rip), %rdi     # 0x33fb8
leaq 0x1d1a1(%rip), %rsi     # 0x28eec
callq 0x42d0
leaq 0x50(%rsp), %rsi
movq %rax, %rdi
callq 0x4270
leaq 0x1d1a8(%rip), %rsi     # 0x28f0c
movq %rax, %rdi
callq 0x42d0
movq %rax, %rdi
callq 0x4130
movq 0x2823d(%rip), %rdi     # 0x33fb8
leaq 0x1d17d(%rip), %rsi     # 0x28eff
callq 0x42d0
leaq 0x70(%rsp), %rsi
movq %rax, %rdi
callq 0x4270
leaq 0x1d171(%rip), %rsi     # 0x28f0c
movq %rax, %rdi
callq 0x42d0
movq %rax, %rdi
callq 0x4130
movq 0x28206(%rip), %rdi     # 0x33fb8
leaq 0x1d155(%rip), %rsi     # 0x28f0e
callq 0x42d0
leaq 0x1d15c(%rip), %rsi     # 0x28f21
movq %rax, %rdi
callq 0x42d0
movq %rax, %rdi
callq 0x4130
movq 0x281dc(%rip), %rdi     # 0x33fb8
leaq 0x1d145(%rip), %rsi     # 0x28f28
callq 0x42d0
movq %rax, %rdi
callq 0x4130
leaq 0x2a0(%rsp), %rdi
leaq 0xd0(%rsp), %rdx
movq 0x8(%rsp), %rsi
callq 0xd596
xorl %ecx, %ecx
cmpl $0x0, 0x2a28d(%rip)     # 0x360a0
setne %cl
leaq 0x10(%rsp), %rdi
leaq 0x2a0(%rsp), %rsi
leaq 0x50(%rsp), %rdx
callq 0x26d60
leaq 0x2a0(%rsp), %rdi
callq 0x46c8
cmpb $0x1, 0x2a28b(%rip)     # 0x360cc
jne 0xbe81
leaq 0x10(%rsp), %rdi
callq 0xa737
jmp 0xc001
movq 0x28197(%rip), %rdi     # 0x33ff0
leaq 0x1d077(%rip), %rsi     # 0x28ed7
callq 0x42d0
movq %rax, %rdi
callq 0x4130
movq 0x2817c(%rip), %rdi     # 0x33ff0
callq 0xc24f
pushq $0x1
popq %rbp
jmp 0xc00d
xorl %eax, %eax
cmpl $0x0, 0x2a216(%rip)     # 0x360a0
setne %al
subq $0x30, %rsp
andl $0x0, 0x18(%rsp)
andl $0x0, 0x10(%rsp)
movl %eax, 0x28(%rsp)
andl $0x0, 0x8(%rsp)
movl %eax, 0x20(%rsp)
andl $0x0, (%rsp)
leaq 0x2d0(%rsp), %rdi
leaq 0x40(%rsp), %rsi
xorl %edx, %edx
xorl %ecx, %ecx
xorl %r8d, %r8d
xorl %r9d, %r9d
callq 0x11a28
addq $0x30, %rsp
cmpb $0x1, 0x2a1fd(%rip)     # 0x360d0
jne 0xbeec
leaq 0x10(%rsp), %rdi
leaq 0x2a0(%rsp), %rdx
callq 0xaf1b
jmp 0xbff4
xorl %eax, %eax
cmpl $0x0, 0x2a1ab(%rip)     # 0x360a0
setne %al
subq $0x8, %rsp
leaq 0xd8(%rsp), %rdi
leaq 0x18(%rsp), %rsi
pushq $0x1
popq %rcx
pushq $-0x1
popq %rdx
movl %edx, %r8d
movl %edx, %r9d
pushq $0x0
pushq $0x0
pushq $0x0
pushq %rax
pushq %rax
pushq $0x1
pushq $0x0
pushq $0x0
pushq $0x0
callq 0x141b0
addq $0x50, %rsp
cmpb $0x1, 0x2a195(%rip)     # 0x360ca
jne 0xbf6a
leaq 0xd0(%rsp), %rdi
pushq $-0x1
popq %rsi
pushq $0x1
popq %rdx
xorl %ecx, %ecx
callq 0x1d650
movq 0x28065(%rip), %rdi     # 0x33fb8
leaq 0xd0(%rsp), %rsi
leaq 0x2a0(%rsp), %rdx
callq 0x1d665
jmp 0xbfc9
leaq 0x90(%rsp), %rsi
movabsq $-0x100000000, %rax     # imm = 0xFFFFFFFF00000000
movq %rax, (%rsi)
andq $0x0, 0x8(%rsi)
movq $0x80, 0x10(%rsi)
andq $0x0, 0x18(%rsi)
leaq 0x10(%rsp), %rdi
callq 0xa7c4
movq 0x160(%rsp), %rdx
movq 0x2800e(%rip), %rdi     # 0x33fb8
leaq 0x90(%rsp), %rsi
leaq 0x10(%rsp), %rcx
callq 0xa528
leaq 0x90(%rsp), %rdi
callq 0x141a0
leaq 0xd0(%rsp), %rdi
callq 0xd5d2
testb %al, %al
je 0xbfe7
leaq 0xd0(%rsp), %rdi
callq 0x1d954
leaq 0xd0(%rsp), %rdi
callq 0x1489c
leaq 0x2a0(%rsp), %rdi
callq 0x14026
leaq 0x10(%rsp), %rdi
callq 0x46c8
xorl %ebp, %ebp
leaq 0x70(%rsp), %rdi
callq 0x46c8
leaq 0x30(%rsp), %rdi
callq 0x141a0
leaq 0xb0(%rsp), %rdi
callq 0x46c8
leaq 0x50(%rsp), %rdi
callq 0x46c8
movl %ebp, %eax
addq $0x818, %rsp            # imm = 0x818
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
retq
cmpl $0x68, %eax
jne 0xc07c
xorl %ebp, %ebp
movq 0x27f5e(%rip), %rdi     # 0x33fb8
callq 0xc24f
jmp 0xc08b
movq 0x27f88(%rip), %rdi     # 0x33ff0
leaq 0x1e607(%rip), %rsi     # 0x2a676
callq 0x42d0
movq %rax, %rdi
callq 0x4130
movq 0x27f6d(%rip), %rdi     # 0x33ff0
callq 0xc24f
pushq $0x1
popq %rbp
pushq $0x4
popq %rdi
callq 0x4140
movl %ebp, (%rax)
movq 0x27ed4(%rip), %rsi     # 0x33f70
movq %rax, %rdi
xorl %edx, %edx
callq 0x45b0
movq %rdx, %r12
movq %rax, %r15
leaq 0x90(%rsp), %rdi
callq 0x141a0
jmp 0xc0d5
jmp 0xc0bd
movq %rdx, %r12
movq %rax, %r15
jmp 0xc0e2
jmp 0xc0c7
movq %rdx, %r12
movq %rax, %r15
jmp 0xc0ef
movq %rdx, %r12
movq %rax, %r15
leaq 0xd0(%rsp), %rdi
callq 0x1489c
leaq 0x2a0(%rsp), %rdi
callq 0x14026
leaq 0x10(%rsp), %rdi
jmp 0xc104
movq %rdx, %r12
movq %rax, %r15
leaq 0x2a0(%rsp), %rdi
callq 0x46c8
jmp 0xc115
jmp 0xc10f
jmp 0xc10f
movq %rdx, %r12
movq %rax, %r15
leaq 0x70(%rsp), %rdi
callq 0x46c8
leaq 0x30(%rsp), %rdi
callq 0x141a0
leaq 0xb0(%rsp), %rdi
callq 0x46c8
leaq 0x50(%rsp), %rdi
callq 0x46c8
cmpl $0x2, %r12d
jne 0xc1a1
movq %r15, %rdi
callq 0x4110
movq 0x27e9b(%rip), %rdi     # 0x33ff0
leaq 0x1cde0(%rip), %rsi     # 0x28f3c
callq 0x42d0
pushq $0x1
popq %rbp
xorl %r13d, %r13d
testl %r14d, %r14d
cmovlel %r13d, %r14d
movq 0x27e7b(%rip), %r15     # 0x33ff0
leaq 0x1c57f(%rip), %r12     # 0x286fb
cmpq %r13, %r14
je 0xc205
movq (%rbx,%r13,8), %rsi
movq %r15, %rdi
callq 0x42d0
movq %rax, %rdi
movq %r12, %rsi
callq 0x42d0
incq %r13
jmp 0xc17c
cmpl $0x1, %r12d
jne 0xc23f
movq %r15, %rdi
callq 0x4110
movl (%rax), %ebp
testl %ebp, %ebp
je 0xc21f
movq 0x27e30(%rip), %rdi     # 0x33ff0
leaq 0x1cd75(%rip), %rsi     # 0x28f3c
callq 0x42d0
xorl %r13d, %r13d
testl %r14d, %r14d
cmovlel %r13d, %r14d
movq 0x27e13(%rip), %r15     # 0x33ff0
leaq 0x1c517(%rip), %r12     # 0x286fb
cmpq %r13, %r14
je 0xc213
movq (%rbx,%r13,8), %rsi
movq %r15, %rdi
callq 0x42d0
movq %rax, %rdi
movq %r12, %rsi
callq 0x42d0
incq %r13
jmp 0xc1e4
movq 0x27de4(%rip), %rdi     # 0x33ff0
callq 0x4130
jmp 0xc21f
movq 0x27dd6(%rip), %rdi     # 0x33ff0
callq 0x4130
callq 0x4540
jmp 0xc038
jmp 0xc22d
jmp 0xc237
movq %rax, %r15
callq 0x4540
jmp 0xc23f
movq %rax, %r15
callq 0x4540
movq %r15, %rdi
callq 0x45e0
movq %rax, %rdi
callq 0xdd58