// File: /workspace/github_c_makefile_star2_O0/genometools[P]genometools/src/tools/gt_show_seedext.c
// Function: gt_show_seedext_option_parser_new
static GtOptionParser* gt_show_seedext_option_parser_new(void *tool_arguments)
{
  GtShowSeedextArguments *arguments = tool_arguments;
  GtOptionParser *op;
  GtOption *option_filename, *op_relax_polish, *op_sortmatches, *op_display,
           *op_verify_alignment, *op_optimal_alignment;

  gt_assert(arguments);
  /* init */
  op = gt_option_parser_new("[options] -f <matchfilename>",
                            "Parse output of a seed extension and show/verify "
                            "the alignment.");

  /* -outfmt */
  op_display = gt_option_new_string_array("outfmt",
                                          gt_querymatch_display_help(),
                                          arguments->display_args);
  gt_option_parser_add_option(op, op_display);

  /* -relax-polish */
  op_relax_polish = gt_option_new_bool("relax-polish",
                                       "do not force alignments to have "
                                       "polished ends",
                                       &arguments->relax_polish,false);
  gt_option_parser_add_option(op, op_relax_polish);
  gt_option_is_development_option(op_relax_polish);

  /* -sort */
  op_sortmatches = gt_option_new_bool("sort","sort matches in ascending order "
                                             "of their end position on the "
                                             "query",
                                      &arguments->sortmatches,false);
  gt_option_parser_add_option(op, op_sortmatches);

  /* -verify-alignment */
  op_verify_alignment = gt_option_new_bool("verify-alignment",
                                           "verify correctned of alignment",
                                           &arguments->verify_alignment,false);
  gt_option_parser_add_option(op, op_verify_alignment);
  gt_option_is_development_option(op_verify_alignment);

  /* -optimal-alignment */
  op_optimal_alignment = gt_option_new_bool("optimal",
                                           "compute optimal alignment for "
                                           "substrings in given coordinates",
                                           &arguments->optimal_alignment,false);
  gt_option_parser_add_option(op, op_optimal_alignment);
  gt_option_is_development_option(op_optimal_alignment);

  /* -f */
  option_filename = gt_option_new_filename("f",
                                          "path to file with match coordinates",
                                          arguments->matchfilename);
  gt_option_is_mandatory(option_filename);
  gt_option_parser_add_option(op, option_filename);

  return op;
}

// Assembly:
subq $0x48, %rsp
movq %rdi, 0x40(%rsp)
movq 0x40(%rsp), %rax
movq %rax, 0x38(%rsp)
cmpq $0x0, 0x38(%rsp)
jne 0x6d7d3
movq 0x5ce7fe(%rip), %rax    # 0x63bfa0
movq (%rax), %rdi
leaq 0x4a8867(%rip), %rsi    # 0x516013
leaq 0x50d3ac(%rip), %rdx    # 0x57ab5f
leaq 0x4bde57(%rip), %rcx    # 0x52b611
leaq 0x4bde34(%rip), %r8     # 0x52b5f5
movl $0x49, %r9d
movb $0x0, %al
callq 0x199f0
callq 0x19370
jmp 0x6d7d5
leaq 0x4bde57(%rip), %rdi    # 0x52b633
leaq 0x4bde6d(%rip), %rsi    # 0x52b650
callq 0xf1420
movq %rax, 0x30(%rsp)
callq 0x265650
movq %rax, %rsi
movq 0x38(%rsp), %rax
movq 0x10(%rax), %rdx
leaq 0x51067e(%rip), %rdi    # 0x57de83
callq 0xf6a50
movq %rax, 0x10(%rsp)
movq 0x30(%rsp), %rdi
movq 0x10(%rsp), %rsi
callq 0xf1600
movq 0x38(%rsp), %rdx
leaq 0x4b9ec5(%rip), %rdi    # 0x5276ef
leaq 0x4b9ecb(%rip), %rsi    # 0x5276fc
xorl %ecx, %ecx
callq 0xf5f20
movq %rax, 0x20(%rsp)
movq 0x30(%rsp), %rdi
movq 0x20(%rsp), %rsi
callq 0xf1600
movq 0x20(%rsp), %rdi
callq 0xf7040
movq 0x38(%rsp), %rdx
addq $0x1, %rdx
leaq 0x50d8a4(%rip), %rdi    # 0x57b10a
leaq 0x4bde23(%rip), %rsi    # 0x52b690
xorl %ecx, %ecx
callq 0xf5f20
movq %rax, 0x18(%rsp)
movq 0x30(%rsp), %rdi
movq 0x18(%rsp), %rsi
callq 0xf1600
movq 0x38(%rsp), %rdx
addq $0x2, %rdx
leaq 0x4b8d5d(%rip), %rdi    # 0x5265f5
leaq 0x4bde34(%rip), %rsi    # 0x52b6d3
xorl %ecx, %ecx
callq 0xf5f20
movq %rax, 0x8(%rsp)
movq 0x30(%rsp), %rdi
movq 0x8(%rsp), %rsi
callq 0xf1600
movq 0x8(%rsp), %rdi
callq 0xf7040
movq 0x38(%rsp), %rdx
addq $0x3, %rdx
leaq 0x4bde1e(%rip), %rdi    # 0x52b6f2
leaq 0x4bde1f(%rip), %rsi    # 0x52b6fa
xorl %ecx, %ecx
callq 0xf5f20
movq %rax, (%rsp)
movq 0x30(%rsp), %rdi
movq (%rsp), %rsi
callq 0xf1600
movq (%rsp), %rdi
callq 0xf7040
movq 0x38(%rsp), %rax
movq 0x8(%rax), %rdx
leaq 0x4c0bb3(%rip), %rdi    # 0x52e4c0
leaq 0x4bde24(%rip), %rsi    # 0x52b738
callq 0xf6aa0
movq %rax, 0x28(%rsp)
movq 0x28(%rsp), %rdi
callq 0xf6ca0
movq 0x30(%rsp), %rdi
movq 0x28(%rsp), %rsi
callq 0xf1600
movq 0x30(%rsp), %rax
addq $0x48, %rsp
retq
nopw %cs:(%rax,%rax)