// File: atfrank[P]PCASA/lib/CASA.cpp
// Function: CASA::initializeAminoAcids()
void CASA::initializeAminoAcids(){
  this->aminoAcids.push_back("ALA");
  this->aminoAcids.push_back("ARG");
  this->aminoAcids.push_back("ASN");
  this->aminoAcids.push_back("ASP");
  this->aminoAcids.push_back("CYS");
  this->aminoAcids.push_back("GLN");
  this->aminoAcids.push_back("GLU");
  this->aminoAcids.push_back("GLY");
  this->aminoAcids.push_back("HIS");
  this->aminoAcids.push_back("ILE");
  this->aminoAcids.push_back("LEU");
  this->aminoAcids.push_back("LYS");
  this->aminoAcids.push_back("MET");
  this->aminoAcids.push_back("PHE");
  this->aminoAcids.push_back("PRO");
  this->aminoAcids.push_back("SER");
  this->aminoAcids.push_back("THR");
  this->aminoAcids.push_back("TRP");
  this->aminoAcids.push_back("TYR");
  this->aminoAcids.push_back("VAL");  
  std::vector<std::string>::iterator it=std::unique(this->aminoAcids.begin(), this->aminoAcids.end());
  this->aminoAcids.resize(std::distance(this->aminoAcids.begin(),it));
}

// Assembly:
subq $0x4a8, %rsp            # imm = 0x4A8
movq %rdi, 0x4a0(%rsp)
movq 0x4a0(%rsp), %rax
movq %rax, 0x130(%rsp)
movq %rax, 0x138(%rsp)
leaq 0x47f(%rsp), %rdi
movq %rdi, 0x140(%rsp)
callq 0x5730
movq 0x140(%rsp), %rdx
leaq 0x59c60(%rip), %rsi     # 0x7b78b
leaq 0x480(%rsp), %rdi
callq 0x7900
jmp 0x21b3a
movq 0x130(%rsp), %rdi
leaq 0x480(%rsp), %rsi
callq 0x38550
jmp 0x21b51
leaq 0x480(%rsp), %rdi
callq 0x5250
leaq 0x47f(%rsp), %rdi
callq 0x5480
movq 0x138(%rsp), %rax
movq %rax, 0x120(%rsp)
leaq 0x447(%rsp), %rdi
movq %rdi, 0x128(%rsp)
callq 0x5730
movq 0x128(%rsp), %rdx
leaq 0x5b0ec(%rip), %rsi     # 0x7cc8b
leaq 0x448(%rsp), %rdi
callq 0x7900
jmp 0x21bae
movq 0x120(%rsp), %rdi
leaq 0x448(%rsp), %rsi
callq 0x38550
jmp 0x21bc5
leaq 0x448(%rsp), %rdi
callq 0x5250
leaq 0x447(%rsp), %rdi
callq 0x5480
movq 0x138(%rsp), %rax
movq %rax, 0x110(%rsp)
leaq 0x41f(%rsp), %rdi
movq %rdi, 0x118(%rsp)
callq 0x5730
movq 0x118(%rsp), %rdx
leaq 0x59bb0(%rip), %rsi     # 0x7b7c3
leaq 0x420(%rsp), %rdi
callq 0x7900
jmp 0x21c22
movq 0x110(%rsp), %rdi
leaq 0x420(%rsp), %rsi
callq 0x38550
jmp 0x21c39
leaq 0x420(%rsp), %rdi
callq 0x5250
leaq 0x41f(%rsp), %rdi
callq 0x5480
movq 0x138(%rsp), %rax
movq %rax, 0x100(%rsp)
leaq 0x3f7(%rsp), %rdi
movq %rdi, 0x108(%rsp)
callq 0x5730
movq 0x108(%rsp), %rdx
leaq 0x59b2c(%rip), %rsi     # 0x7b7b3
leaq 0x3f8(%rsp), %rdi
callq 0x7900
jmp 0x21c96
movq 0x100(%rsp), %rdi
leaq 0x3f8(%rsp), %rsi
callq 0x38550
jmp 0x21cad
leaq 0x3f8(%rsp), %rdi
callq 0x5250
leaq 0x3f7(%rsp), %rdi
callq 0x5480
movq 0x138(%rsp), %rax
movq %rax, 0xf0(%rsp)
leaq 0x3cf(%rsp), %rdi
movq %rdi, 0xf8(%rsp)
callq 0x5730
movq 0xf8(%rsp), %rdx
leaq 0x59aa0(%rip), %rsi     # 0x7b79b
leaq 0x3d0(%rsp), %rdi
callq 0x7900
jmp 0x21d0a
movq 0xf0(%rsp), %rdi
leaq 0x3d0(%rsp), %rsi
callq 0x38550
jmp 0x21d21
leaq 0x3d0(%rsp), %rdi
callq 0x5250
leaq 0x3cf(%rsp), %rdi
callq 0x5480
movq 0x138(%rsp), %rax
movq %rax, 0xe0(%rsp)
leaq 0x3a7(%rsp), %rdi
movq %rdi, 0xe8(%rsp)
callq 0x5730
movq 0xe8(%rsp), %rdx
leaq 0x5aeee(%rip), %rsi     # 0x7cc5d
leaq 0x3a8(%rsp), %rdi
callq 0x7900
jmp 0x21d7e
movq 0xe0(%rsp), %rdi
leaq 0x3a8(%rsp), %rsi
callq 0x38550
jmp 0x21d95
leaq 0x3a8(%rsp), %rdi
callq 0x5250
leaq 0x3a7(%rsp), %rdi
callq 0x5480
movq 0x138(%rsp), %rax
movq %rax, 0xd0(%rsp)
leaq 0x37f(%rsp), %rdi
movq %rdi, 0xd8(%rsp)
callq 0x5730
movq 0xd8(%rsp), %rdx
leaq 0x5ae26(%rip), %rsi     # 0x7cc09
leaq 0x380(%rsp), %rdi
callq 0x7900
jmp 0x21df2
movq 0xd0(%rsp), %rdi
leaq 0x380(%rsp), %rsi
callq 0x38550
jmp 0x21e09
leaq 0x380(%rsp), %rdi
callq 0x5250
leaq 0x37f(%rsp), %rdi
callq 0x5480
movq 0x138(%rsp), %rax
movq %rax, 0xc0(%rsp)
leaq 0x357(%rsp), %rdi
movq %rdi, 0xc8(%rsp)
callq 0x5730
movq 0xc8(%rsp), %rdx
leaq 0x5992c(%rip), %rsi     # 0x7b783
leaq 0x358(%rsp), %rdi
callq 0x7900
jmp 0x21e66
movq 0xc0(%rsp), %rdi
leaq 0x358(%rsp), %rsi
callq 0x38550
jmp 0x21e7d
leaq 0x358(%rsp), %rdi
callq 0x5250
leaq 0x357(%rsp), %rdi
callq 0x5480
movq 0x138(%rsp), %rax
movq %rax, 0xb0(%rsp)
leaq 0x32f(%rsp), %rdi
movq %rdi, 0xb8(%rsp)
callq 0x5730
movq 0xb8(%rsp), %rdx
leaq 0x59920(%rip), %rsi     # 0x7b7eb
leaq 0x330(%rsp), %rdi
callq 0x7900
jmp 0x21eda
movq 0xb0(%rsp), %rdi
leaq 0x330(%rsp), %rsi
callq 0x38550
jmp 0x21ef1
leaq 0x330(%rsp), %rdi
callq 0x5250
leaq 0x32f(%rsp), %rdi
callq 0x5480
movq 0x138(%rsp), %rax
movq %rax, 0xa0(%rsp)
leaq 0x307(%rsp), %rdi
movq %rdi, 0xa8(%rsp)
callq 0x5730
movq 0xa8(%rsp), %rdx
leaq 0x59894(%rip), %rsi     # 0x7b7d3
leaq 0x308(%rsp), %rdi
callq 0x7900
jmp 0x21f4e
movq 0xa0(%rsp), %rdi
leaq 0x308(%rsp), %rsi
callq 0x38550
jmp 0x21f65
leaq 0x308(%rsp), %rdi
callq 0x5250
leaq 0x307(%rsp), %rdi
callq 0x5480
movq 0x138(%rsp), %rax
movq %rax, 0x90(%rsp)
leaq 0x2df(%rsp), %rdi
movq %rdi, 0x98(%rsp)
callq 0x5730
movq 0x98(%rsp), %rdx
leaq 0x59828(%rip), %rsi     # 0x7b7db
leaq 0x2e0(%rsp), %rdi
callq 0x7900
jmp 0x21fc2
movq 0x90(%rsp), %rdi
leaq 0x2e0(%rsp), %rsi
callq 0x38550
jmp 0x21fd9
leaq 0x2e0(%rsp), %rdi
callq 0x5250
leaq 0x2df(%rsp), %rdi
callq 0x5480
movq 0x138(%rsp), %rax
movq %rax, 0x80(%rsp)
leaq 0x2b7(%rsp), %rdi
movq %rdi, 0x88(%rsp)
callq 0x5730
movq 0x88(%rsp), %rdx
leaq 0x5abc5(%rip), %rsi     # 0x7cbec
leaq 0x2b8(%rsp), %rdi
callq 0x7900
jmp 0x22036
movq 0x80(%rsp), %rdi
leaq 0x2b8(%rsp), %rsi
callq 0x38550
jmp 0x2204d
leaq 0x2b8(%rsp), %rdi
callq 0x5250
leaq 0x2b7(%rsp), %rdi
callq 0x5480
movq 0x138(%rsp), %rax
movq %rax, 0x70(%rsp)
leaq 0x28f(%rsp), %rdi
movq %rdi, 0x78(%rsp)
callq 0x5730
movq 0x78(%rsp), %rdx
leaq 0x59761(%rip), %rsi     # 0x7b7f3
leaq 0x290(%rsp), %rdi
callq 0x7900
jmp 0x220a1
movq 0x70(%rsp), %rdi
leaq 0x290(%rsp), %rsi
callq 0x38550
jmp 0x220b5
leaq 0x290(%rsp), %rdi
callq 0x5250
leaq 0x28f(%rsp), %rdi
callq 0x5480
movq 0x138(%rsp), %rax
movq %rax, 0x60(%rsp)
leaq 0x267(%rsp), %rdi
movq %rdi, 0x68(%rsp)
callq 0x5730
movq 0x68(%rsp), %rdx
leaq 0x59709(%rip), %rsi     # 0x7b803
leaq 0x268(%rsp), %rdi
callq 0x7900
jmp 0x22109
movq 0x60(%rsp), %rdi
leaq 0x268(%rsp), %rsi
callq 0x38550
jmp 0x2211d
leaq 0x268(%rsp), %rdi
callq 0x5250
leaq 0x267(%rsp), %rdi
callq 0x5480
movq 0x138(%rsp), %rax
movq %rax, 0x50(%rsp)
leaq 0x23f(%rsp), %rdi
movq %rdi, 0x58(%rsp)
callq 0x5730
movq 0x58(%rsp), %rdx
leaq 0x59641(%rip), %rsi     # 0x7b7a3
leaq 0x240(%rsp), %rdi
callq 0x7900
jmp 0x22171
movq 0x50(%rsp), %rdi
leaq 0x240(%rsp), %rsi
callq 0x38550
jmp 0x22185
leaq 0x240(%rsp), %rdi
callq 0x5250
leaq 0x23f(%rsp), %rdi
callq 0x5480
movq 0x138(%rsp), %rax
movq %rax, 0x40(%rsp)
leaq 0x217(%rsp), %rdi
movq %rdi, 0x48(%rsp)
callq 0x5730
movq 0x48(%rsp), %rdx
leaq 0x595c9(%rip), %rsi     # 0x7b793
leaq 0x218(%rsp), %rdi
callq 0x7900
jmp 0x221d9
movq 0x40(%rsp), %rdi
leaq 0x218(%rsp), %rsi
callq 0x38550
jmp 0x221ed
leaq 0x218(%rsp), %rdi
callq 0x5250
leaq 0x217(%rsp), %rdi
callq 0x5480
movq 0x138(%rsp), %rax
movq %rax, 0x30(%rsp)
leaq 0x1ef(%rsp), %rdi
movq %rdi, 0x38(%rsp)
callq 0x5730
movq 0x38(%rsp), %rdx
leaq 0x59579(%rip), %rsi     # 0x7b7ab
leaq 0x1f0(%rsp), %rdi
callq 0x7900
jmp 0x22241
movq 0x30(%rsp), %rdi
leaq 0x1f0(%rsp), %rsi
callq 0x38550
jmp 0x22255
leaq 0x1f0(%rsp), %rdi
callq 0x5250
leaq 0x1ef(%rsp), %rdi
callq 0x5480
movq 0x138(%rsp), %rax
movq %rax, 0x20(%rsp)
leaq 0x1c7(%rsp), %rdi
movq %rdi, 0x28(%rsp)
callq 0x5730
movq 0x28(%rsp), %rdx
leaq 0x5a9a3(%rip), %rsi     # 0x7cc3d
leaq 0x1c8(%rsp), %rdi
callq 0x7900
jmp 0x222a9
movq 0x20(%rsp), %rdi
leaq 0x1c8(%rsp), %rsi
callq 0x38550
jmp 0x222bd
leaq 0x1c8(%rsp), %rdi
callq 0x5250
leaq 0x1c7(%rsp), %rdi
callq 0x5480
movq 0x138(%rsp), %rax
movq %rax, 0x10(%rsp)
leaq 0x19f(%rsp), %rdi
movq %rdi, 0x18(%rsp)
callq 0x5730
movq 0x18(%rsp), %rdx
leaq 0x59509(%rip), %rsi     # 0x7b80b
leaq 0x1a0(%rsp), %rdi
callq 0x7900
jmp 0x22311
movq 0x10(%rsp), %rdi
leaq 0x1a0(%rsp), %rsi
callq 0x38550
jmp 0x22325
leaq 0x1a0(%rsp), %rdi
callq 0x5250
leaq 0x19f(%rsp), %rdi
callq 0x5480
movq 0x138(%rsp), %rax
movq %rax, (%rsp)
leaq 0x177(%rsp), %rdi
movq %rdi, 0x8(%rsp)
callq 0x5730
movq 0x8(%rsp), %rdx
leaq 0x59452(%rip), %rsi     # 0x7b7bb
leaq 0x178(%rsp), %rdi
callq 0x7900
jmp 0x22378
movq (%rsp), %rdi
leaq 0x178(%rsp), %rsi
callq 0x38550
jmp 0x2238b
leaq 0x178(%rsp), %rdi
callq 0x5250
leaq 0x177(%rsp), %rdi
callq 0x5480
movq 0x138(%rsp), %rdi
callq 0x8840
movq 0x138(%rsp), %rdi
movq %rax, 0x160(%rsp)
callq 0x86b0
movq %rax, 0x158(%rsp)
movq 0x160(%rsp), %rdi
movq 0x158(%rsp), %rsi
callq 0x38580
movq 0x138(%rsp), %rdi
movq %rax, 0x168(%rsp)
callq 0x8840
movq %rax, 0x150(%rsp)
movq 0x168(%rsp), %rax
movq %rax, 0x148(%rsp)
movq 0x150(%rsp), %rdi
movq 0x148(%rsp), %rsi
callq 0x38670
movq 0x138(%rsp), %rdi
movq %rax, %rsi
callq 0x385d0
addq $0x4a8, %rsp            # imm = 0x4A8
retq
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x470(%rsp)
movl %eax, 0x46c(%rsp)
jmp 0x22475
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x470(%rsp)
movl %eax, 0x46c(%rsp)
leaq 0x480(%rsp), %rdi
callq 0x5250
leaq 0x47f(%rsp), %rdi
callq 0x5480
jmp 0x229ea
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x470(%rsp)
movl %eax, 0x46c(%rsp)
jmp 0x224be
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x470(%rsp)
movl %eax, 0x46c(%rsp)
leaq 0x448(%rsp), %rdi
callq 0x5250
leaq 0x447(%rsp), %rdi
callq 0x5480
jmp 0x229ea
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x470(%rsp)
movl %eax, 0x46c(%rsp)
jmp 0x22507
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x470(%rsp)
movl %eax, 0x46c(%rsp)
leaq 0x420(%rsp), %rdi
callq 0x5250
leaq 0x41f(%rsp), %rdi
callq 0x5480
jmp 0x229ea
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x470(%rsp)
movl %eax, 0x46c(%rsp)
jmp 0x22550
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x470(%rsp)
movl %eax, 0x46c(%rsp)
leaq 0x3f8(%rsp), %rdi
callq 0x5250
leaq 0x3f7(%rsp), %rdi
callq 0x5480
jmp 0x229ea
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x470(%rsp)
movl %eax, 0x46c(%rsp)
jmp 0x22599
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x470(%rsp)
movl %eax, 0x46c(%rsp)
leaq 0x3d0(%rsp), %rdi
callq 0x5250
leaq 0x3cf(%rsp), %rdi
callq 0x5480
jmp 0x229ea
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x470(%rsp)
movl %eax, 0x46c(%rsp)
jmp 0x225e2
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x470(%rsp)
movl %eax, 0x46c(%rsp)
leaq 0x3a8(%rsp), %rdi
callq 0x5250
leaq 0x3a7(%rsp), %rdi
callq 0x5480
jmp 0x229ea
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x470(%rsp)
movl %eax, 0x46c(%rsp)
jmp 0x2262b
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x470(%rsp)
movl %eax, 0x46c(%rsp)
leaq 0x380(%rsp), %rdi
callq 0x5250
leaq 0x37f(%rsp), %rdi
callq 0x5480
jmp 0x229ea
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x470(%rsp)
movl %eax, 0x46c(%rsp)
jmp 0x22674
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x470(%rsp)
movl %eax, 0x46c(%rsp)
leaq 0x358(%rsp), %rdi
callq 0x5250
leaq 0x357(%rsp), %rdi
callq 0x5480
jmp 0x229ea
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x470(%rsp)
movl %eax, 0x46c(%rsp)
jmp 0x226bd
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x470(%rsp)
movl %eax, 0x46c(%rsp)
leaq 0x330(%rsp), %rdi
callq 0x5250
leaq 0x32f(%rsp), %rdi
callq 0x5480
jmp 0x229ea
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x470(%rsp)
movl %eax, 0x46c(%rsp)
jmp 0x22706
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x470(%rsp)
movl %eax, 0x46c(%rsp)
leaq 0x308(%rsp), %rdi
callq 0x5250
leaq 0x307(%rsp), %rdi
callq 0x5480
jmp 0x229ea
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x470(%rsp)
movl %eax, 0x46c(%rsp)
jmp 0x2274f
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x470(%rsp)
movl %eax, 0x46c(%rsp)
leaq 0x2e0(%rsp), %rdi
callq 0x5250
leaq 0x2df(%rsp), %rdi
callq 0x5480
jmp 0x229ea
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x470(%rsp)
movl %eax, 0x46c(%rsp)
jmp 0x22798
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x470(%rsp)
movl %eax, 0x46c(%rsp)
leaq 0x2b8(%rsp), %rdi
callq 0x5250
leaq 0x2b7(%rsp), %rdi
callq 0x5480
jmp 0x229ea
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x470(%rsp)
movl %eax, 0x46c(%rsp)
jmp 0x227e1
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x470(%rsp)
movl %eax, 0x46c(%rsp)
leaq 0x290(%rsp), %rdi
callq 0x5250
leaq 0x28f(%rsp), %rdi
callq 0x5480
jmp 0x229ea
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x470(%rsp)
movl %eax, 0x46c(%rsp)
jmp 0x2282a
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x470(%rsp)
movl %eax, 0x46c(%rsp)
leaq 0x268(%rsp), %rdi
callq 0x5250
leaq 0x267(%rsp), %rdi
callq 0x5480
jmp 0x229ea
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x470(%rsp)
movl %eax, 0x46c(%rsp)
jmp 0x22873
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x470(%rsp)
movl %eax, 0x46c(%rsp)
leaq 0x240(%rsp), %rdi
callq 0x5250
leaq 0x23f(%rsp), %rdi
callq 0x5480
jmp 0x229ea
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x470(%rsp)
movl %eax, 0x46c(%rsp)
jmp 0x228bc
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x470(%rsp)
movl %eax, 0x46c(%rsp)
leaq 0x218(%rsp), %rdi
callq 0x5250
leaq 0x217(%rsp), %rdi
callq 0x5480
jmp 0x229ea
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x470(%rsp)
movl %eax, 0x46c(%rsp)
jmp 0x22905
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x470(%rsp)
movl %eax, 0x46c(%rsp)
leaq 0x1f0(%rsp), %rdi
callq 0x5250
leaq 0x1ef(%rsp), %rdi
callq 0x5480
jmp 0x229ea
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x470(%rsp)
movl %eax, 0x46c(%rsp)
jmp 0x2294e
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x470(%rsp)
movl %eax, 0x46c(%rsp)
leaq 0x1c8(%rsp), %rdi
callq 0x5250
leaq 0x1c7(%rsp), %rdi
callq 0x5480
jmp 0x229ea
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x470(%rsp)
movl %eax, 0x46c(%rsp)
jmp 0x22997
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x470(%rsp)
movl %eax, 0x46c(%rsp)
leaq 0x1a0(%rsp), %rdi
callq 0x5250
leaq 0x19f(%rsp), %rdi
callq 0x5480
jmp 0x229ea
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x470(%rsp)
movl %eax, 0x46c(%rsp)
jmp 0x229dd
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x470(%rsp)
movl %eax, 0x46c(%rsp)
leaq 0x178(%rsp), %rdi
callq 0x5250
leaq 0x177(%rsp), %rdi
callq 0x5480
movq 0x470(%rsp), %rdi
callq 0x5720
nopw (%rax,%rax)