LLM4Binary/decompile-bench-makefile huggingface dataset:
// File: /workspace/github_c_makefile_star2_O1/genometools[P]genometools/src/extended/intset_16.c
// Function: gt_intset_16_get_test
static GtUword gt_intset_16_get_test(GtIntset *intset, GtUword idx)
{
  GtIntset16 *intset_16 = gt_intset_16_cast(intset);
  GtIntsetMembers *members = intset->members;
  GtUword *sectionstart = members->sectionstart;
  gt_assert(idx < members->nextfree);

  return (gt_intset_16_sec_idx_largest_leq(sectionstart, idx) <<
         members->logsectionsize) + intset_16->elements[idx];
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
movq %rsi, %rbx
movq %rdi, %r14
callq 0x3091a6
movq %rax, %rdi
movq %r14, %rsi
callq 0x15e2b0
movq 0x8(%r14), %rcx
cmpq %rbx, 0x20(%rcx)
jbe 0x30a2b9
movq (%rcx), %rsi
movq $-0x2, %rdx
movq %rdx, %rdi
incq %rdx
cmpq %rbx, 0x10(%rsi,%rdi,8)
jbe 0x30a293
movb 0x8(%rcx), %cl
shlq %cl, %rdx
movq 0x10(%rax), %rax
movzwl (%rax,%rbx,2), %eax
addq %rdx, %rax
addq $0x8, %rsp
popq %rbx
popq %r14
retq
callq 0x8e06f
// File: /workspace/github_c_makefile_star2_O1/genometools[P]genometools/src/extended/intset_16.c
// Function: gt_intset_16_get_idx_smallest_geq_test
static GtUword gt_intset_16_get_idx_smallest_geq_test(GtIntset *intset,
                                                     GtUword value)
{
  GtIntset16 *intset_16 = gt_intset_16_cast(intset);
  GtIntsetMembers *members = intset->members;

  GtUword sectionnum = GT_ELEM2SECTION_M(value);

  if (value > members->previouselem)
    return members->num_of_elems;

  gt_assert(value <= members->maxelement);
  if (members->sectionstart[sectionnum] < members->sectionstart[sectionnum+1]) {
    return members->sectionstart[sectionnum] +
           gt_intset_16_idx_sm_geq(
                  intset_16->elements + members->sectionstart[sectionnum],
                  intset_16->elements + members->sectionstart[sectionnum+1] - 1,
                  (uint16_t) value);
  }
  return members->sectionstart[sectionnum];
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
movq %rsi, %rbx
movq %rdi, %r14
callq 0x3091a6
movq %rax, %rdi
movq %r14, %rsi
callq 0x15e2b0
movq 0x8(%r14), %rdx
movb 0x8(%rdx), %cl
movq %rbx, %rsi
shrq %cl, %rsi
cmpq %rbx, 0x38(%rdx)
jae 0x30a2f1
movq 0x28(%rdx), %rax
jmp 0x30a350
cmpq %rbx, 0x18(%rdx)
jb 0x30a358
movq %rax, %rcx
movq (%rdx), %rdx
movq (%rdx,%rsi,8), %rax
movq 0x8(%rdx,%rsi,8), %rsi
cmpq %rsi, %rax
jae 0x30a350
movq 0x10(%rcx), %rcx
cmpw %bx, (%rcx,%rax,2)
jbe 0x30a319
xorl %ecx, %ecx
jmp 0x30a34d
leaq (%rcx,%rax,2), %rdx
leaq (%rcx,%rsi,2), %rcx
addq $-0x2, %rcx
cmpw %bx, (%rcx)
jae 0x30a335
subq %rdx, %rcx
sarq %rcx
incq %rcx
jmp 0x30a34d
movq $-0x2, %rcx
movq %rcx, %rsi
addq $0x2, %rcx
cmpw %bx, 0x2(%rdx,%rsi)
jb 0x30a33c
sarq %rcx
addq %rcx, %rax
addq $0x8, %rsp
popq %rbx
popq %r14
retq
callq 0x8e0a8
nopl (%rax)
// File: /workspace/github_c_makefile_star2_O1/genometools[P]genometools/src/extended/intset_32.c
// Function: gt_intset_32_new
GtIntset* gt_intset_32_new(GtUword maxelement, GtUword num_of_elems)
{
  GtIntset *intset;
  GtIntset32 *intset_32;
  GtIntsetMembers *members;
  GtUword idx;

  gt_assert(num_of_elems != 0);

  intset = gt_intset_create(gt_intset_32_class());
  intset_32 = gt_intset_32_cast(intset);
  members = intset->members;

  members->currentsectionnum = 0;
  members->maxelement = maxelement;
  members->nextfree = 0;
  members->num_of_elems = num_of_elems;
  members->previouselem = ULONG_MAX;
  members->refcount = 0;

  members->logsectionsize = GT_BITS_FOR_TYPE(uint32_t);
  members->numofsections = GT_ELEM2SECTION_M(maxelement) + 1;

  intset_32->elements =
    gt_malloc(sizeof (*intset_32->elements) * num_of_elems);

  members->sectionstart = gt_malloc(sizeof (*members->sectionstart) *
                                    (members->numofsections + 1));

  members->sectionstart[0] = 0;
  for (idx = (GtUword) 1; idx <= members->numofsections; idx++) {
    members->sectionstart[idx] = num_of_elems;
  }
  return intset;
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
pushq %rax
testq %rsi, %rsi
je 0x30a43d
movq %rsi, %rbx
movq %rdi, %r15
callq 0x30a442
movq %rax, %rdi
callq 0x15e23c
movq %rax, %r14
callq 0x30a442
movq %rax, %rdi
movq %r14, %rsi
callq 0x15e2b0
movq %rax, %r12
movq 0x8(%r14), %r13
xorl %ebp, %ebp
movq %rbp, 0x10(%r13)
movq %r15, 0x18(%r13)
movq %rbp, 0x20(%r13)
movq %rbx, 0x28(%r13)
movq $-0x1, 0x38(%r13)
movq %rbp, 0x40(%r13)
movq $0x20, 0x8(%r13)
shrq $0x20, %r15
incq %r15
movq %r15, 0x30(%r13)
leaq (,%rbx,4), %rdi
leaq 0xdd9e6(%rip), %r15     # 0x3e7dc7
movq %r15, %rsi
movl $0x4c, %edx
callq 0x1092b2
movq %rax, 0x10(%r12)
movq 0x30(%r13), %rax
leaq 0x8(,%rax,8), %rdi
movq %r15, %rsi
movl $0x4f, %edx
callq 0x1092b2
movq %rax, (%r13)
movq %rbp, (%rax)
cmpq %rbp, 0x30(%r13)
je 0x30a42b
movl $0x1, %ecx
movq %rbx, (%rax,%rcx,8)
incq %rcx
cmpq 0x30(%r13), %rcx
jbe 0x30a41e
movq %r14, %rax
addq $0x8, %rsp
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
retq
callq 0x8e0e1
// File: /workspace/github_c_makefile_star2_O1/genometools[P]genometools/src/extended/intset_32.c
// Function: gt_intset_32_write
GtIntset *gt_intset_32_write(GtIntset *intset, FILE *fp, GtError *err)
{
  gt_assert(intset != NULL);
  gt_assert(fp != NULL);
  gt_error_check(err);
  return gt_intset_32_io(intset, fp, err);
}

// Assembly:
pushq %r15
pushq %r14
pushq %rbx
testq %rdi, %rdi
je 0x30abad
movq %rsi, %r14
testq %rsi, %rsi
je 0x30abb2
movq %rdx, %rbx
movq %rdi, %r15
testq %rdx, %rdx
je 0x30ab9a
movq %rbx, %rdi
callq 0x101a9a
testb %al, %al
jne 0x30abb7
movq %r15, %rdi
movq %r14, %rsi
movq %rbx, %rdx
popq %rbx
popq %r14
popq %r15
jmp 0x30a706
callq 0x8e2a7
callq 0x8e26e
callq 0x8e235
// File: /workspace/github_c_makefile_star2_O1/genometools[P]genometools/src/extended/intset_32.c
// Function: gt_intset_32_add
void gt_intset_32_add(GtIntset *intset, GtUword elem)
{
  GtIntset32 *intset_32 = gt_intset_32_cast(intset);
  GtIntsetMembers *members = intset->members;
  GtUword *sectionstart = members->sectionstart;
  gt_assert(members->nextfree < members->num_of_elems);
  gt_assert(elem <= members->maxelement);
  gt_assert(members->previouselem == ULONG_MAX || members->previouselem < elem);
  while (elem >= GT_SECTIONMINELEM(members->currentsectionnum + 1)) {
    gt_assert(members->currentsectionnum < members->numofsections);
    sectionstart[members->currentsectionnum + 1] = members->nextfree;
    members->currentsectionnum++;
  }
  gt_assert(GT_SECTIONMINELEM(members->currentsectionnum) <= elem &&
            elem < GT_SECTIONMINELEM(members->currentsectionnum+1) &&
            GT_ELEM2SECTION_M(elem) == members->currentsectionnum);
  intset_32->elements[members->nextfree++] = (uint32_t) elem;
  members->previouselem = elem;
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
movq %rsi, %rbx
movq %rdi, %r14
callq 0x30a442
movq %rax, %rdi
movq %r14, %rsi
callq 0x15e2b0
movq 0x8(%r14), %rdx
movq 0x20(%rdx), %rcx
cmpq 0x28(%rdx), %rcx
jae 0x30ac8e
cmpq %rbx, 0x18(%rdx)
jb 0x30ac93
movq 0x38(%rdx), %rcx
cmpq $-0x1, %rcx
setne %sil
cmpq %rbx, %rcx
setae %cl
testb %cl, %sil
jne 0x30ac98
movq 0x8(%rdx), %rcx
movq 0x10(%rdx), %rsi
leaq 0x1(%rsi), %rdi
movq %rdi, %r8
shlq %cl, %r8
cmpq %rbx, %r8
ja 0x30ac54
movq (%rdx), %r8
cmpq 0x30(%rdx), %rsi
jae 0x30ac89
movq 0x20(%rdx), %rcx
movq %rcx, (%r8,%rdi,8)
movq 0x8(%rdx), %rcx
movq 0x10(%rdx), %rdi
leaq 0x1(%rdi), %rsi
movq %rsi, 0x10(%rdx)
addq $0x2, %rdi
movq %rdi, %r9
shlq %cl, %r9
cmpq %rbx, %r9
jbe 0x30ac27
movq %rsi, %r8
shlq %cl, %r8
movq %rbx, %rdi
shrq %cl, %rdi
cmpq %rbx, %r8
ja 0x30ac9d
cmpq %rsi, %rdi
jne 0x30ac9d
movq 0x10(%rax), %rax
movq 0x20(%rdx), %rcx
leaq 0x1(%rcx), %rsi
movq %rsi, 0x20(%rdx)
movl %ebx, (%rax,%rcx,4)
movq %rbx, 0x38(%rdx)
addq $0x8, %rsp
popq %rbx
popq %r14
retq
callq 0x8e352
callq 0x8e2e0
callq 0x8e3c4
callq 0x8e319
callq 0x8e38b
// File: /workspace/github_c_makefile_star2_O1/genometools[P]genometools/src/extended/intset_32.c
// Function: gt_intset_32_get
GtUword gt_intset_32_get(GtIntset *intset, GtUword idx)
{
  GtUword quotient;
  GtIntset32 *intset_32 = gt_intset_32_cast(intset);
  GtIntsetMembers *members = intset->members;
  GtUword *sectionstart = members->sectionstart;
  gt_assert(idx < members->nextfree);

  quotient = gt_intset_32_binarysearch_sec_idx_largest_leq(
                                      sectionstart,
                                      sectionstart + members->numofsections - 1,
                                      idx);
  return (quotient << members->logsectionsize) +
         intset_32->elements[idx];
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
movq %rsi, %rbx
movq %rdi, %r14
callq 0x30a442
movq %rax, %rdi
movq %r14, %rsi
callq 0x15e2b0
movq 0x8(%r14), %rcx
cmpq %rbx, 0x20(%rcx)
jbe 0x30ad54
movq (%rcx), %rsi
movq 0x30(%rcx), %rdx
leaq (%rsi,%rdx,8), %rdi
addq $-0x8, %rdi
xorl %edx, %edx
cmpq %rbx, (%rsi)
cmovbeq %rsi, %rdx
cmpq %rdi, %rsi
jae 0x30ad15
movq %rsi, %r8
movq %rdi, %r9
subq %r8, %r9
sarq $0x4, %r9
cmpq %rbx, (%r8,%r9,8)
jb 0x30ad04
leaq (%r8,%r9,8), %rdi
addq $-0x8, %rdi
jmp 0x30ad10
leaq (%r8,%r9,8), %rdx
leaq (%r8,%r9,8), %r8
addq $0x8, %r8
cmpq %rdi, %r8
jb 0x30acea
testq %rdx, %rdx
je 0x30ad59
movq %rdx, %rdi
subq %rsi, %rdi
addq $-0x8, %rdi
addq $0x8, %rdx
addq $0x8, %rdi
leaq 0x8(%rdx), %rsi
cmpq %rbx, (%rdx)
movq %rsi, %rdx
jbe 0x30ad28
sarq $0x3, %rdi
movb 0x8(%rcx), %cl
shlq %cl, %rdi
movq 0x10(%rax), %rax
movl (%rax,%rbx,4), %eax
addq %rdi, %rax
addq $0x8, %rsp
popq %rbx
popq %r14
retq
callq 0x8e3fd
callq 0x8e436
// File: /workspace/github_c_makefile_star2_O1/genometools[P]genometools/src/extended/intset_32.c
// Function: gt_intset_32_is_member
bool gt_intset_32_is_member(GtIntset *intset, GtUword elem)
{
  GtIntset32 *intset_32 = gt_intset_32_cast(intset);
  GtIntsetMembers *members = intset->members;
  GtUword *sectionstart = members->sectionstart;
  if (elem <= members->maxelement)
  {
    const GtUword sectionnum = GT_ELEM2SECTION_M(elem);

    if (sectionstart[sectionnum] < sectionstart[sectionnum+1]) {
      return gt_intset_32_binarysearch_is_member(
                           intset_32->elements + sectionstart[sectionnum],
                           intset_32->elements + sectionstart[sectionnum+1] - 1,
                           (uint64_t) elem);
    }
  }
  return false;
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
movq %rsi, %rbx
movq %rdi, %r14
callq 0x30a442
movq %rax, %rdi
movq %r14, %rsi
callq 0x15e2b0
movq %rax, %rdx
movq 0x8(%r14), %rax
cmpq %rbx, 0x18(%rax)
jb 0x30ae01
movb 0x8(%rax), %cl
movq %rbx, %rsi
shrq %cl, %rsi
movq (%rax), %rax
movq (%rax,%rsi,8), %rcx
movq 0x8(%rax,%rsi,8), %rsi
cmpq %rsi, %rcx
jae 0x30adfc
movq 0x10(%rdx), %rax
leaq (%rax,%rcx,4), %rdi
leaq (%rax,%rsi,4), %rdx
addq $-0x4, %rdx
cmpq %rdx, %rdi
setbe %al
ja 0x30adfc
movq %rdx, %r8
subq %rdi, %r8
sarq $0x3, %r8
leaq (%rdi,%r8,4), %r8
cmpl %ebx, (%r8)
jbe 0x30adf1
addq $-0x4, %r8
movq %r8, %rdx
jmp 0x30adcd
jae 0x30adfc
addq $0x4, %r8
movq %r8, %rdi
jmp 0x30adcd
cmpq %rsi, %rcx
jb 0x30ae03
xorl %eax, %eax
andb $0x1, %al
addq $0x8, %rsp
popq %rbx
popq %r14
retq
// File: /workspace/github_c_makefile_star2_O1/genometools[P]genometools/src/extended/intset_32.c
// Function: gt_intset_32_get_idx_smallest_geq
GtUword gt_intset_32_get_idx_smallest_geq(GtIntset *intset, GtUword value)
{
  GtIntset32 *intset_32 = gt_intset_32_cast(intset);
  GtIntsetMembers *members = intset->members;

  GtUword sectionnum = GT_ELEM2SECTION_M(value);

  if (value > members->previouselem)
    return members->num_of_elems;

  gt_assert(value <= members->maxelement);

  if (members->sectionstart[sectionnum] < members->sectionstart[sectionnum+1]) {
    return members->sectionstart[sectionnum] +
           gt_intset_32_binarysearch_idx_sm_geq(
                  intset_32->elements + members->sectionstart[sectionnum],
                  intset_32->elements + members->sectionstart[sectionnum+1] - 1,
                  (uint32_t) value);
  }
  return members->sectionstart[sectionnum];
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
movq %rsi, %rbx
movq %rdi, %r14
callq 0x30a442
movq %rax, %rdi
movq %r14, %rsi
callq 0x15e2b0
movq 0x8(%r14), %rdx
movb 0x8(%rdx), %cl
movq %rbx, %rsi
shrq %cl, %rsi
cmpq %rbx, 0x38(%rdx)
jae 0x30ae43
movq 0x28(%rdx), %rax
jmp 0x30aec8
cmpq %rbx, 0x18(%rdx)
jb 0x30aed0
movq %rax, %rcx
movq (%rdx), %rdx
movq (%rdx,%rsi,8), %rax
movq 0x8(%rdx,%rsi,8), %rdx
cmpq %rdx, %rax
jae 0x30aec8
movq 0x10(%rcx), %rsi
leaq (%rsi,%rax,4), %rcx
leaq (%rsi,%rdx,4), %rdx
addq $-0x4, %rdx
cmpq %rdx, %rcx
ja 0x30aed5
cmpl %ebx, (%rcx)
jae 0x30ae8d
cmpl %ebx, (%rdx)
jae 0x30ae91
subq %rcx, %rdx
sarq $0x2, %rdx
incq %rdx
movq %rdx, %rsi
jmp 0x30aec5
xorl %esi, %esi
jmp 0x30aec5
movq %rcx, %rsi
cmpq %rdx, %rcx
jae 0x30aebe
movq %rcx, %rsi
movq %rdx, %rdi
subq %rsi, %rdi
sarq $0x3, %rdi
cmpl %ebx, (%rsi,%rdi,4)
jb 0x30aeb1
leaq (%rsi,%rdi,4), %rdx
jmp 0x30aeb9
leaq (%rsi,%rdi,4), %rsi
addq $0x4, %rsi
cmpq %rdx, %rsi
jb 0x30ae9c
subq %rcx, %rsi
sarq $0x2, %rsi
addq %rsi, %rax
addq $0x8, %rsp
popq %rbx
popq %r14
retq
callq 0x8e4a8
callq 0x8e46f
// File: /workspace/github_c_makefile_star2_O1/genometools[P]genometools/src/extended/intset_32.c
// Function: gt_intset_32_get_test
static GtUword gt_intset_32_get_test(GtIntset *intset, GtUword idx)
{
  GtIntset32 *intset_32 = gt_intset_32_cast(intset);
  GtIntsetMembers *members = intset->members;
  GtUword *sectionstart = members->sectionstart;
  gt_assert(idx < members->nextfree);

  return (gt_intset_32_sec_idx_largest_leq(sectionstart, idx) <<
         members->logsectionsize) + intset_32->elements[idx];
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
movq %rsi, %rbx
movq %rdi, %r14
callq 0x30a442
movq %rax, %rdi
movq %r14, %rsi
callq 0x15e2b0
movq 0x8(%r14), %rcx
cmpq %rbx, 0x20(%rcx)
jbe 0x30b552
movq (%rcx), %rsi
movq $-0x2, %rdx
movq %rdx, %rdi
incq %rdx
cmpq %rbx, 0x10(%rsi,%rdi,8)
jbe 0x30b52d
movb 0x8(%rcx), %cl
shlq %cl, %rdx
movq 0x10(%rax), %rax
movl (%rax,%rbx,4), %eax
addq %rdx, %rax
addq $0x8, %rsp
popq %rbx
popq %r14
retq
callq 0x8e51a
// File: /workspace/github_c_makefile_star2_O1/genometools[P]genometools/src/extended/intset_32.c
// Function: gt_intset_32_get_idx_smallest_geq_test
static GtUword gt_intset_32_get_idx_smallest_geq_test(GtIntset *intset,
                                                     GtUword value)
{
  GtIntset32 *intset_32 = gt_intset_32_cast(intset);
  GtIntsetMembers *members = intset->members;

  GtUword sectionnum = GT_ELEM2SECTION_M(value);

  if (value > members->previouselem)
    return members->num_of_elems;

  gt_assert(value <= members->maxelement);
  if (members->sectionstart[sectionnum] < members->sectionstart[sectionnum+1]) {
    return members->sectionstart[sectionnum] +
           gt_intset_32_idx_sm_geq(
                  intset_32->elements + members->sectionstart[sectionnum],
                  intset_32->elements + members->sectionstart[sectionnum+1] - 1,
                  (uint32_t) value);
  }
  return members->sectionstart[sectionnum];
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
movq %rsi, %rbx
movq %rdi, %r14
callq 0x30a442
movq %rax, %rdi
movq %r14, %rsi
callq 0x15e2b0
movq 0x8(%r14), %rdx
movb 0x8(%rdx), %cl
movq %rbx, %rsi
shrq %cl, %rsi
cmpq %rbx, 0x38(%rdx)
jae 0x30b58a
movq 0x28(%rdx), %rax
jmp 0x30b5e8
cmpq %rbx, 0x18(%rdx)
jb 0x30b5f0
movq %rax, %rcx
movq (%rdx), %rdx
movq (%rdx,%rsi,8), %rax
movq 0x8(%rdx,%rsi,8), %rsi
cmpq %rsi, %rax
jae 0x30b5e8
movq 0x10(%rcx), %rcx
cmpl %ebx, (%rcx,%rax,4)
jbe 0x30b5b1
xorl %ecx, %ecx
jmp 0x30b5e5
leaq (%rcx,%rax,4), %rdx
leaq (%rcx,%rsi,4), %rcx
addq $-0x4, %rcx
cmpl %ebx, (%rcx)
jae 0x30b5cd
subq %rdx, %rcx
sarq $0x2, %rcx
incq %rcx
jmp 0x30b5e5
movq $-0x4, %rcx
movq %rcx, %rsi
addq $0x4, %rcx
cmpl %ebx, 0x4(%rdx,%rsi)
jb 0x30b5d4
sarq $0x2, %rcx
addq %rcx, %rax
addq $0x8, %rsp
popq %rbx
popq %r14
retq
callq 0x8e553
nopl (%rax)
// File: /workspace/github_c_makefile_star2_O1/genometools[P]genometools/src/extended/intset_8.c
// Function: gt_intset_8_new
GtIntset* gt_intset_8_new(GtUword maxelement, GtUword num_of_elems)
{
  GtIntset *intset;
  GtIntset8 *intset_8;
  GtIntsetMembers *members;
  GtUword idx;

  gt_assert(num_of_elems != 0);

  intset = gt_intset_create(gt_intset_8_class());
  intset_8 = gt_intset_8_cast(intset);
  members = intset->members;

  members->currentsectionnum = 0;
  members->maxelement = maxelement;
  members->nextfree = 0;
  members->num_of_elems = num_of_elems;
  members->previouselem = ULONG_MAX;
  members->refcount = 0;

  members->logsectionsize = GT_BITS_FOR_TYPE(uint8_t);
  members->numofsections = GT_ELEM2SECTION_M(maxelement) + 1;

  intset_8->elements =
    gt_malloc(sizeof (*intset_8->elements) * num_of_elems);

  members->sectionstart = gt_malloc(sizeof (*members->sectionstart) *
                                    (members->numofsections + 1));

  members->sectionstart[0] = 0;
  for (idx = (GtUword) 1; idx <= members->numofsections; idx++) {
    members->sectionstart[idx] = num_of_elems;
  }
  return intset;
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
pushq %rax
testq %rsi, %rsi
je 0x30b6d0
movq %rsi, %rbx
movq %rdi, %r15
callq 0x30b6d5
movq %rax, %rdi
callq 0x15e23c
movq %rax, %r14
callq 0x30b6d5
movq %rax, %rdi
movq %r14, %rsi
callq 0x15e2b0
movq %rax, %r12
movq 0x8(%r14), %r13
xorl %ebp, %ebp
movq %rbp, 0x10(%r13)
movq %r15, 0x18(%r13)
movq %rbp, 0x20(%r13)
movq %rbx, 0x28(%r13)
movq $-0x1, 0x38(%r13)
movq %rbp, 0x40(%r13)
movq $0x8, 0x8(%r13)
shrq $0x8, %r15
incq %r15
movq %r15, 0x30(%r13)
leaq 0xdcba8(%rip), %r15     # 0x3e8219
movq %rbx, %rdi
movq %r15, %rsi
movl $0x4c, %edx
callq 0x1092b2
movq %rax, 0x10(%r12)
movq 0x30(%r13), %rax
leaq 0x8(,%rax,8), %rdi
movq %r15, %rsi
movl $0x4f, %edx
callq 0x1092b2
movq %rax, (%r13)
movq %rbp, (%rax)
cmpq %rbp, 0x30(%r13)
je 0x30b6be
movl $0x1, %ecx
movq %rbx, (%rax,%rcx,8)
incq %rcx
cmpq 0x30(%r13), %rcx
jbe 0x30b6b1
movq %r14, %rax
addq $0x8, %rsp
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
retq
callq 0x8e58c
// File: /workspace/github_c_makefile_star2_O1/genometools[P]genometools/src/extended/intset_8.c
// Function: gt_intset_8_write
GtIntset *gt_intset_8_write(GtIntset *intset, FILE *fp, GtError *err)
{
  gt_assert(intset != NULL);
  gt_assert(fp != NULL);
  gt_error_check(err);
  return gt_intset_8_io(intset, fp, err);
}

// Assembly:
pushq %r15
pushq %r14
pushq %rbx
testq %rdi, %rdi
je 0x30be30
movq %rsi, %r14
testq %rsi, %rsi
je 0x30be35
movq %rdx, %rbx
movq %rdi, %r15
testq %rdx, %rdx
je 0x30be1d
movq %rbx, %rdi
callq 0x101a9a
testb %al, %al
jne 0x30be3a
movq %r15, %rdi
movq %r14, %rsi
movq %rbx, %rdx
popq %rbx
popq %r14
popq %r15
jmp 0x30b995
callq 0x8e752
callq 0x8e719
callq 0x8e6e0
// File: /workspace/github_c_makefile_star2_O1/genometools[P]genometools/src/extended/intset_8.c
// Function: gt_intset_8_add
void gt_intset_8_add(GtIntset *intset, GtUword elem)
{
  GtIntset8 *intset_8 = gt_intset_8_cast(intset);
  GtIntsetMembers *members = intset->members;
  GtUword *sectionstart = members->sectionstart;
  gt_assert(members->nextfree < members->num_of_elems);
  gt_assert(elem <= members->maxelement);
  gt_assert(members->previouselem == ULONG_MAX || members->previouselem < elem);
  while (elem >= GT_SECTIONMINELEM(members->currentsectionnum + 1)) {
    gt_assert(members->currentsectionnum < members->numofsections);
    sectionstart[members->currentsectionnum + 1] = members->nextfree;
    members->currentsectionnum++;
  }
  gt_assert(GT_SECTIONMINELEM(members->currentsectionnum) <= elem &&
            elem < GT_SECTIONMINELEM(members->currentsectionnum+1) &&
            GT_ELEM2SECTION_M(elem) == members->currentsectionnum);
  intset_8->elements[members->nextfree++] = (uint8_t) elem;
  members->previouselem = elem;
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
movq %rsi, %rbx
movq %rdi, %r14
callq 0x30b6d5
movq %rax, %rdi
movq %r14, %rsi
callq 0x15e2b0
movq 0x8(%r14), %rdx
movq 0x20(%rdx), %rcx
cmpq 0x28(%rdx), %rcx
jae 0x30bf11
cmpq %rbx, 0x18(%rdx)
jb 0x30bf16
movq 0x38(%rdx), %rcx
cmpq $-0x1, %rcx
setne %sil
cmpq %rbx, %rcx
setae %cl
testb %cl, %sil
jne 0x30bf1b
movq 0x8(%rdx), %rcx
movq 0x10(%rdx), %rsi
leaq 0x1(%rsi), %rdi
movq %rdi, %r8
shlq %cl, %r8
cmpq %rbx, %r8
ja 0x30bed7
movq (%rdx), %r8
cmpq 0x30(%rdx), %rsi
jae 0x30bf0c
movq 0x20(%rdx), %rcx
movq %rcx, (%r8,%rdi,8)
movq 0x8(%rdx), %rcx
movq 0x10(%rdx), %rdi
leaq 0x1(%rdi), %rsi
movq %rsi, 0x10(%rdx)
addq $0x2, %rdi
movq %rdi, %r9
shlq %cl, %r9
cmpq %rbx, %r9
jbe 0x30beaa
movq %rsi, %r8
shlq %cl, %r8
movq %rbx, %rdi
shrq %cl, %rdi
cmpq %rbx, %r8
ja 0x30bf20
cmpq %rsi, %rdi
jne 0x30bf20
movq 0x10(%rax), %rax
movq 0x20(%rdx), %rcx
leaq 0x1(%rcx), %rsi
movq %rsi, 0x20(%rdx)
movb %bl, (%rax,%rcx)
movq %rbx, 0x38(%rdx)
addq $0x8, %rsp
popq %rbx
popq %r14
retq
callq 0x8e7fd
callq 0x8e78b
callq 0x8e86f
callq 0x8e7c4
callq 0x8e836
// File: /workspace/github_c_makefile_star2_O1/genometools[P]genometools/src/extended/intset_8.c
// Function: gt_intset_8_get
GtUword gt_intset_8_get(GtIntset *intset, GtUword idx)
{
  GtUword quotient;
  GtIntset8 *intset_8 = gt_intset_8_cast(intset);
  GtIntsetMembers *members = intset->members;
  GtUword *sectionstart = members->sectionstart;
  gt_assert(idx < members->nextfree);

  quotient = gt_intset_8_binarysearch_sec_idx_largest_leq(
                                      sectionstart,
                                      sectionstart + members->numofsections - 1,
                                      idx);
  return (quotient << members->logsectionsize) +
         intset_8->elements[idx];
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
movq %rsi, %rbx
movq %rdi, %r14
callq 0x30b6d5
movq %rax, %rdi
movq %r14, %rsi
callq 0x15e2b0
movq 0x8(%r14), %rcx
cmpq %rbx, 0x20(%rcx)
jbe 0x30bfd8
movq (%rcx), %rsi
movq 0x30(%rcx), %rdx
leaq (%rsi,%rdx,8), %rdi
addq $-0x8, %rdi
xorl %edx, %edx
cmpq %rbx, (%rsi)
cmovbeq %rsi, %rdx
cmpq %rdi, %rsi
jae 0x30bf98
movq %rsi, %r8
movq %rdi, %r9
subq %r8, %r9
sarq $0x4, %r9
cmpq %rbx, (%r8,%r9,8)
jb 0x30bf87
leaq (%r8,%r9,8), %rdi
addq $-0x8, %rdi
jmp 0x30bf93
leaq (%r8,%r9,8), %rdx
leaq (%r8,%r9,8), %r8
addq $0x8, %r8
cmpq %rdi, %r8
jb 0x30bf6d
testq %rdx, %rdx
je 0x30bfdd
movq %rdx, %rdi
subq %rsi, %rdi
addq $-0x8, %rdi
addq $0x8, %rdx
addq $0x8, %rdi
leaq 0x8(%rdx), %rsi
cmpq %rbx, (%rdx)
movq %rsi, %rdx
jbe 0x30bfab
sarq $0x3, %rdi
movb 0x8(%rcx), %cl
shlq %cl, %rdi
movq 0x10(%rax), %rax
movzbl (%rax,%rbx), %eax
addq %rdi, %rax
addq $0x8, %rsp
popq %rbx
popq %r14
retq
callq 0x8e8a8
callq 0x8e8e1
// File: /workspace/github_c_makefile_star2_O1/genometools[P]genometools/src/extended/intset_8.c
// Function: gt_intset_8_is_member
bool gt_intset_8_is_member(GtIntset *intset, GtUword elem)
{
  GtIntset8 *intset_8 = gt_intset_8_cast(intset);
  GtIntsetMembers *members = intset->members;
  GtUword *sectionstart = members->sectionstart;
  if (elem <= members->maxelement)
  {
    const GtUword sectionnum = GT_ELEM2SECTION_M(elem);

    if (sectionstart[sectionnum] < sectionstart[sectionnum+1]) {
      return gt_intset_8_binarysearch_is_member(
                            intset_8->elements + sectionstart[sectionnum],
                            intset_8->elements + sectionstart[sectionnum+1] - 1,
                            (uint64_t) elem);
    }
  }
  return false;
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
movq %rsi, %rbx
movq %rdi, %r14
callq 0x30b6d5
movq %rax, %rdi
movq %r14, %rsi
callq 0x15e2b0
movq %rax, %rdx
movq 0x8(%r14), %rax
cmpq %rbx, 0x18(%rax)
jb 0x30c081
movb 0x8(%rax), %cl
movq %rbx, %rsi
shrq %cl, %rsi
movq (%rax), %rax
movq (%rax,%rsi,8), %rcx
movq 0x8(%rax,%rsi,8), %rsi
cmpq %rsi, %rcx
jae 0x30c07c
movq 0x10(%rdx), %rdi
leaq (%rdi,%rsi), %rdx
decq %rdx
addq %rcx, %rdi
cmpq %rdx, %rdi
setbe %al
ja 0x30c07c
movq %rdx, %r9
subq %rdi, %r9
sarq %r9
leaq (%rdi,%r9), %r8
cmpb %bl, (%rdi,%r9)
jbe 0x30c072
decq %r8
movq %r8, %rdx
jmp 0x30c04f
jae 0x30c07c
incq %r8
movq %r8, %rdi
jmp 0x30c04f
cmpq %rsi, %rcx
jb 0x30c083
xorl %eax, %eax
andb $0x1, %al
addq $0x8, %rsp
popq %rbx
popq %r14
retq
// File: /workspace/github_c_makefile_star2_O1/genometools[P]genometools/src/extended/intset_8.c
// Function: gt_intset_8_get_idx_smallest_geq
GtUword gt_intset_8_get_idx_smallest_geq(GtIntset *intset, GtUword value)
{
  GtIntset8 *intset_8 = gt_intset_8_cast(intset);
  GtIntsetMembers *members = intset->members;

  GtUword sectionnum = GT_ELEM2SECTION_M(value);

  if (value > members->previouselem)
    return members->num_of_elems;

  gt_assert(value <= members->maxelement);

  if (members->sectionstart[sectionnum] < members->sectionstart[sectionnum+1]) {
    return members->sectionstart[sectionnum] +
           gt_intset_8_binarysearch_idx_sm_geq(
                   intset_8->elements + members->sectionstart[sectionnum],
                   intset_8->elements + members->sectionstart[sectionnum+1] - 1,
                   (uint8_t) value);
  }
  return members->sectionstart[sectionnum];
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
movq %rsi, %rbx
movq %rdi, %r14
callq 0x30b6d5
movq %rax, %rdi
movq %r14, %rsi
callq 0x15e2b0
movq 0x8(%r14), %rdx
movb 0x8(%rdx), %cl
movq %rbx, %rsi
shrq %cl, %rsi
cmpq %rbx, 0x38(%rdx)
jae 0x30c0c0
movq 0x28(%rdx), %rax
jmp 0x30c135
cmpq %rbx, 0x18(%rdx)
jb 0x30c13d
movq %rax, %rcx
movq (%rdx), %rdx
movq (%rdx,%rsi,8), %rax
movq 0x8(%rdx,%rsi,8), %rdx
cmpq %rdx, %rax
jae 0x30c135
movq 0x10(%rcx), %rcx
addq %rcx, %rdx
decq %rdx
addq %rax, %rcx
cmpq %rdx, %rcx
ja 0x30c142
cmpb %bl, (%rcx)
jae 0x30c0ff
cmpb %bl, (%rdx)
jae 0x30c103
subq %rcx, %rdx
incq %rdx
movq %rdx, %rsi
jmp 0x30c132
xorl %esi, %esi
jmp 0x30c132
movq %rcx, %rsi
cmpq %rdx, %rcx
jae 0x30c12f
movq %rcx, %rsi
movq %rdx, %rdi
subq %rsi, %rdi
sarq %rdi
cmpb %bl, (%rsi,%rdi)
jb 0x30c124
addq %rsi, %rdi
movq %rdi, %rdx
jmp 0x30c12a
addq %rdi, %rsi
incq %rsi
cmpq %rdx, %rsi
jb 0x30c10e
subq %rcx, %rsi
addq %rsi, %rax
addq $0x8, %rsp
popq %rbx
popq %r14
retq
callq 0x8e953
callq 0x8e91a
// File: /workspace/github_c_makefile_star2_O1/genometools[P]genometools/src/extended/intset_8.c
// Function: gt_intset_8_get_test
static GtUword gt_intset_8_get_test(GtIntset *intset, GtUword idx)
{
  GtIntset8 *intset_8 = gt_intset_8_cast(intset);
  GtIntsetMembers *members = intset->members;
  GtUword *sectionstart = members->sectionstart;
  gt_assert(idx < members->nextfree);

  return (gt_intset_8_sec_idx_largest_leq(sectionstart, idx) <<
         members->logsectionsize) + intset_8->elements[idx];
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
movq %rsi, %rbx
movq %rdi, %r14
callq 0x30b6d5
movq %rax, %rdi
movq %r14, %rsi
callq 0x15e2b0
movq 0x8(%r14), %rcx
cmpq %rbx, 0x20(%rcx)
jbe 0x30c7a1
movq (%rcx), %rsi
movq $-0x2, %rdx
movq %rdx, %rdi
incq %rdx
cmpq %rbx, 0x10(%rsi,%rdi,8)
jbe 0x30c77b
movb 0x8(%rcx), %cl
shlq %cl, %rdx
movq 0x10(%rax), %rax
movzbl (%rax,%rbx), %eax
addq %rdx, %rax
addq $0x8, %rsp
popq %rbx
popq %r14
retq
callq 0x8e9c5
// File: /workspace/github_c_makefile_star2_O1/genometools[P]genometools/src/extended/intset_8.c
// Function: gt_intset_8_get_idx_smallest_geq_test
static GtUword gt_intset_8_get_idx_smallest_geq_test(GtIntset *intset,
                                                      GtUword value)
{
  GtIntset8 *intset_8 = gt_intset_8_cast(intset);
  GtIntsetMembers *members = intset->members;

  GtUword sectionnum = GT_ELEM2SECTION_M(value);

  if (value > members->previouselem)
    return members->num_of_elems;

  gt_assert(value <= members->maxelement);
  if (members->sectionstart[sectionnum] < members->sectionstart[sectionnum+1]) {
    return members->sectionstart[sectionnum] +
           gt_intset_8_idx_sm_geq(
                   intset_8->elements + members->sectionstart[sectionnum],
                   intset_8->elements + members->sectionstart[sectionnum+1] - 1,
                   (uint8_t) value);
  }
  return members->sectionstart[sectionnum];
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
movq %rsi, %rbx
movq %rdi, %r14
callq 0x30b6d5
movq %rax, %rdi
movq %r14, %rsi
callq 0x15e2b0
movq 0x8(%r14), %rdx
movb 0x8(%rdx), %cl
movq %rbx, %rsi
shrq %cl, %rsi
cmpq %rbx, 0x38(%rdx)
jae 0x30c7d9
movq 0x28(%rdx), %rax
jmp 0x30c82d
cmpq %rbx, 0x18(%rdx)
jb 0x30c835
movq %rax, %rcx
movq (%rdx), %rdx
movq (%rdx,%rsi,8), %rax
movq 0x8(%rdx,%rsi,8), %rsi
cmpq %rsi, %rax
jae 0x30c82d
movq 0x10(%rcx), %rdx
cmpb %bl, (%rdx,%rax)
jbe 0x30c800
xorl %ecx, %ecx
jmp 0x30c82a
leaq (%rdx,%rsi), %rcx
decq %rcx
addq %rax, %rdx
cmpb %bl, (%rcx)
jae 0x30c816
subq %rdx, %rcx
incq %rcx
jmp 0x30c82a
movq $-0x1, %rsi
leaq 0x1(%rsi), %rcx
cmpb %bl, 0x1(%rdx,%rsi)
movq %rcx, %rsi
jb 0x30c81d
addq %rcx, %rax
addq $0x8, %rsp
popq %rbx
popq %r14
retq
callq 0x8e9fe
nop
// File: /workspace/github_c_makefile_star2_O1/genometools[P]genometools/src/extended/type_checker_obo.c
// Function: gt_type_checker_obo_description
static const char* gt_type_checker_obo_description(GtTypeChecker *tc)
{
  GtTypeCheckerOBO *tco;
  gt_assert(tc);
  tco = gt_type_checker_obo_cast(tc);
  return gt_str_get(tco->description);
}

// Assembly:
pushq %rax
testq %rdi, %rdi
je 0x30c863
movq %rdi, %rsi
leaq 0x1b6adc(%rip), %rdi    # 0x4c3330
callq 0x18b8ca
movq 0x10(%rax), %rdi
popq %rax
jmp 0x120d23
callq 0x8ea37
// File: /workspace/github_c_makefile_star2_O1/genometools[P]genometools/src/extended/type_checker_obo.c
// Function: gt_type_checker_obo_is_valid
static bool gt_type_checker_obo_is_valid(GtTypeChecker *tc, const char *type)
{
  GtTypeCheckerOBO *tco;
  gt_assert(tc && type);
  tco = gt_type_checker_obo_cast(tc);
  return gt_cstr_table_get(tco->feature_node_types, type) ? true : false;
}

// Assembly:
pushq %rbx
testq %rdi, %rdi
je 0x30c899
movq %rsi, %rbx
testq %rsi, %rsi
je 0x30c899
movq %rdi, %rsi
leaq 0x1b6ab0(%rip), %rdi    # 0x4c3330
callq 0x18b8ca
movq 0x18(%rax), %rdi
movq %rbx, %rsi
callq 0xe8e61
testq %rax, %rax
setne %al
popq %rbx
retq
callq 0x8ea6e
// File: /workspace/github_c_makefile_star2_O1/genometools[P]genometools/src/extended/type_checker_obo.c
// Function: gt_type_checker_obo_is_partof
static bool gt_type_checker_obo_is_partof(GtTypeChecker *tc,
                                          const char *parent_type,
                                          const char *child_type)
{
  GtTypeCheckerOBO *tco;
  gt_assert(tc && parent_type && child_type);
  tco = gt_type_checker_obo_cast(tc);
  return gt_type_graph_is_partof(tco->type_graph, parent_type, child_type);
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
testq %rdi, %rdi
je 0x30c8dc
movq %rsi, %r14
testq %rsi, %rsi
je 0x30c8dc
movq %rdx, %rbx
testq %rdx, %rdx
je 0x30c8dc
movq %rdi, %rsi
leaq 0x1b6a6f(%rip), %rdi    # 0x4c3330
callq 0x18b8ca
movq 0x20(%rax), %rdi
movq %r14, %rsi
movq %rbx, %rdx
addq $0x8, %rsp
popq %rbx
popq %r14
jmp 0x30cf0c
callq 0x8eaa5
// File: /workspace/github_c_makefile_star2_O1/genometools[P]genometools/src/extended/type_checker_obo.c
// Function: gt_type_checker_obo_is_a
static bool gt_type_checker_obo_is_a(GtTypeChecker *tc,
                                          const char *parent_type,
                                          const char *child_type)
{
  GtTypeCheckerOBO *tco;
  gt_assert(tc && parent_type && child_type);
  tco = gt_type_checker_obo_cast(tc);
  return gt_type_graph_is_a(tco->type_graph, parent_type, child_type);
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
testq %rdi, %rdi
je 0x30c91f
movq %rsi, %r14
testq %rsi, %rsi
je 0x30c91f
movq %rdx, %rbx
testq %rdx, %rdx
je 0x30c91f
movq %rdi, %rsi
leaq 0x1b6a2c(%rip), %rdi    # 0x4c3330
callq 0x18b8ca
movq 0x20(%rax), %rdi
movq %r14, %rsi
movq %rbx, %rdx
addq $0x8, %rsp
popq %rbx
popq %r14
jmp 0x30d134
callq 0x8eadc
// File: /workspace/github_c_makefile_star2_O1/genometools[P]genometools/src/extended/type_checker_obo.c
// Function: gt_type_checker_obo_free
static void gt_type_checker_obo_free(GtTypeChecker *tc)
{
  GtTypeCheckerOBO *tco = gt_type_checker_obo_cast(tc);
  gt_type_graph_delete(tco->type_graph);
  gt_cstr_table_delete(tco->feature_node_types);
  gt_str_delete(tco->description);
}

// Assembly:
pushq %rbx
movq %rdi, %rsi
leaq 0x1b6a01(%rip), %rdi    # 0x4c3330
callq 0x18b8ca
movq %rax, %rbx
movq 0x20(%rax), %rdi
callq 0x30cbbf
movq 0x18(%rbx), %rdi
callq 0xe9120
movq 0x10(%rbx), %rdi
popq %rbx
jmp 0x121b03
// File: /workspace/github_c_makefile_star2_O1/genometools[P]genometools/src/extended/type_checker_obo.c
// Function: gt_type_checker_obo_new
GtTypeChecker* gt_type_checker_obo_new(const char *obo_file_path, GtError *err)
{
  GtTypeCheckerOBO *tco;
  GtTypeChecker *tc;
  gt_error_check(err);
  gt_assert(obo_file_path);
  tc = gt_type_checker_create(gt_type_checker_obo_class());
  tco = gt_type_checker_obo_cast(tc);
  tco->description= gt_str_new_cstr("OBO file ");
  gt_str_append_cstr(tco->description, obo_file_path);
  tco->feature_node_types = gt_cstr_table_new();
  tco->type_graph = gt_type_graph_new();
  if (create_feature_nodes(tco, obo_file_path, err)) {
    gt_type_checker_delete(tc);
    return NULL;
  }
  return tc;
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
pushq %rax
movq %rsi, %r15
movq %rdi, %r12
testq %rsi, %rsi
je 0x30c979
movq %r15, %rdi
callq 0x101a9a
testb %al, %al
jne 0x30caee
testq %r12, %r12
je 0x30cae4
leaq 0x1b69a7(%rip), %r14    # 0x4c3330
movq %r14, %rdi
callq 0x18b7a0
movq %rax, %rbx
movq %r14, %rdi
movq %rax, %rsi
callq 0x18b8ca
movq %rax, %r14
leaq 0xdbccf(%rip), %rdi     # 0x3e8678
callq 0x120955
movq %rax, 0x10(%r14)
movq %rax, %rdi
movq %r12, %rsi
callq 0x12097f
callq 0xe8d9c
movq %rax, 0x18(%r14)
callq 0x30cb50
movq %rax, 0x20(%r14)
testq %r15, %r15
je 0x30c9e4
movq %r15, %rdi
callq 0x101a9a
testb %al, %al
jne 0x30caf3
testq %r14, %r14
je 0x30cae9
movq %r12, %rdi
movq %r15, %rsi
callq 0x348c40
testq %rax, %rax
je 0x30cac8
movq %rax, %r15
movq %rax, %rdi
callq 0x3494dd
testq %rax, %rax
je 0x30cabb
xorl %r12d, %r12d
leaq 0xdbd01(%rip), %r13     # 0x3e8720
leaq 0x999ec(%rip), %rbp     # 0x3a6412
movq %r15, %rdi
movq %r12, %rsi
callq 0x349482
movq %rax, %rdi
movq %r13, %rsi
callq 0x17a40
testl %eax, %eax
jne 0x30caa7
movq %r15, %rdi
movq %r12, %rsi
movq %rbp, %rdx
callq 0x34949f
testq %rax, %rax
je 0x30ca66
movq %rax, %rdi
leaq 0x9e7d5(%rip), %rsi     # 0x3ab232
callq 0x17a40
testl %eax, %eax
je 0x30caa7
movq %r14, %rdi
movq %r15, %rsi
movq %r12, %rdx
leaq 0xdbec6(%rip), %rcx     # 0x3e893c
callq 0x30caf8
movq %r14, %rdi
movq %r15, %rsi
movq %r12, %rdx
leaq 0x7f097(%rip), %rcx     # 0x38bb22
callq 0x30caf8
movq %r15, %rdi
movq %r12, %rsi
callq 0x3494c4
movq 0x20(%r14), %rdi
movq %rax, %rsi
callq 0x30cc56
incq %r12
movq %r15, %rdi
callq 0x3494dd
cmpq %rax, %r12
jb 0x30ca26
movq %r15, %rdi
callq 0x349381
testq %r15, %r15
jne 0x30cad2
movq %rbx, %rdi
callq 0x18b883
xorl %ebx, %ebx
movq %rbx, %rax
addq $0x8, %rsp
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
retq
callq 0x8ebba
callq 0x8eb83
callq 0x8eb13
callq 0x8eb4c
// File: /workspace/github_c_makefile_star2_O1/genometools[P]genometools/src/extended/type_checker_obo.c
// Function: add_feature_node_from_tree
static void add_feature_node_from_tree(GtTypeCheckerOBO *tco,
                                       GtOBOParseTree *obo_parse_tree,
                                       GtUword stanza_num,
                                       const char *stanza_key)
{
  const char *value;
  gt_assert(tco && obo_parse_tree && stanza_key);
  value = gt_obo_parse_tree_get_stanza_value(obo_parse_tree, stanza_num,
                                             stanza_key);
  /* do not add values multiple times (possible for "name" values) */
  if (!gt_cstr_table_get(tco->feature_node_types, value))
    gt_cstr_table_add(tco->feature_node_types, value);
  else
    puts(value);
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
testq %rcx, %rcx
je 0x30cb48
movq %rdi, %rbx
movq %rsi, %rdi
movq %rdx, %rsi
movq %rcx, %rdx
callq 0x34949f
movq %rax, %r14
movq 0x18(%rbx), %rdi
movq %rax, %rsi
callq 0xe8e61
testq %rax, %rax
je 0x30cb35
movq %r14, %rdi
addq $0x8, %rsp
popq %rbx
popq %r14
jmp 0x17bd0
movq 0x18(%rbx), %rdi
movq %r14, %rsi
addq $0x8, %rsp
popq %rbx
popq %r14
jmp 0xe8e02
callq 0x8ebf3
nopl (%rax)
// File: /workspace/github_c_makefile_star2_O1/genometools[P]genometools/src/extended/type_graph.c
// Function: gt_type_graph_new
GtTypeGraph* gt_type_graph_new(void)
{
  GtTypeGraph *type_graph = gt_malloc(sizeof (GtTypeGraph));
  type_graph->name2id = gt_hashmap_new(GT_HASH_DIRECT, NULL, NULL);
  type_graph->id2name = gt_hashmap_new(GT_HASH_DIRECT, NULL, NULL);
  type_graph->nodemap = gt_hashmap_new(GT_HASH_DIRECT, NULL, NULL);
  type_graph->nodes = gt_array_new(sizeof (GtTypeNode*));
  type_graph->part_of_out_edges = gt_bool_matrix_new();
  type_graph->part_of_in_edges = gt_bool_matrix_new();
  type_graph->ready = false;
  return type_graph;
}

// Assembly:
pushq %rbx
leaq 0xdbc0c(%rip), %rsi     # 0x3e8764
movl $0x38, %edi
movl $0x2b, %edx
callq 0x1092b2
movq %rax, %rbx
xorl %edi, %edi
xorl %esi, %esi
xorl %edx, %edx
callq 0x105830
movq %rax, (%rbx)
xorl %edi, %edi
xorl %esi, %esi
xorl %edx, %edx
callq 0x105830
movq %rax, 0x8(%rbx)
xorl %edi, %edi
xorl %esi, %esi
xorl %edx, %edx
callq 0x105830
movq %rax, 0x10(%rbx)
movl $0x8, %edi
callq 0xd46fc
movq %rax, 0x18(%rbx)
callq 0x3489ac
movq %rax, 0x20(%rbx)
callq 0x3489ac
movq %rax, 0x28(%rbx)
movb $0x0, 0x30(%rbx)
movq %rbx, %rax
popq %rbx
retq
// File: /workspace/github_c_makefile_star2_O1/genometools[P]genometools/src/extended/type_graph.c
// Function: gt_type_graph_delete
void gt_type_graph_delete(GtTypeGraph *type_graph)
{
  GtUword i;
  if (!type_graph) return;
  gt_bool_matrix_delete(type_graph->part_of_in_edges);
  gt_bool_matrix_delete(type_graph->part_of_out_edges);
  for (i = 0; i < gt_array_size(type_graph->nodes); i++)
    gt_type_node_delete(*(GtTypeNode**) gt_array_get(type_graph->nodes, i));
  gt_array_delete(type_graph->nodes);
  gt_hashmap_delete(type_graph->nodemap);
  gt_hashmap_delete(type_graph->id2name);
  gt_hashmap_delete(type_graph->name2id);
  gt_free(type_graph);
}

// Assembly:
testq %rdi, %rdi
je 0x30cc55
pushq %r14
pushq %rbx
pushq %rax
movq %rdi, %rbx
movq 0x28(%rdi), %rdi
callq 0x348bdb
movq 0x20(%rbx), %rdi
callq 0x348bdb
movq 0x18(%rbx), %rdi
callq 0xd4a9a
testq %rax, %rax
je 0x30cc17
xorl %r14d, %r14d
movq 0x18(%rbx), %rdi
movq %r14, %rsi
callq 0xd47ba
movq (%rax), %rdi
callq 0x30d1f4
incq %r14
movq 0x18(%rbx), %rdi
callq 0xd4a9a
cmpq %rax, %r14
jb 0x30cbf2
movq 0x18(%rbx), %rdi
callq 0xd4ef4
movq 0x10(%rbx), %rdi
callq 0x105f7d
movq 0x8(%rbx), %rdi
callq 0x105f7d
movq (%rbx), %rdi
callq 0x105f7d
leaq 0xdbb23(%rip), %rsi     # 0x3e8764
movq %rbx, %rdi
movl $0x42, %edx
addq $0x8, %rsp
popq %rbx
popq %r14
jmp 0x109670
retq
// File: /workspace/github_c_makefile_star2_O1/genometools[P]genometools/src/extended/type_graph.c
// Function: gt_type_graph_is_partof
bool gt_type_graph_is_partof(GtTypeGraph *type_graph, const char *parent_type,
                             const char *child_type)
{
  const char *parent_id, *child_id;
  GtTypeNode *parent_node, *child_node;
  gt_assert(type_graph && parent_type && child_type);
  /* make sure graph is built */
  if (!type_graph->ready) {
    create_vertices(type_graph);
    type_graph->ready = true;
  }
  /* get parent ID, if the type is not mappable to an ID, assume it is the ID */
  if (!(parent_id = gt_hashmap_get(type_graph->name2id, parent_type)))
    parent_id = parent_type;
  /* get child ID, if the type is not mappable to an ID, assmue it is the ID */
  if (!(child_id = gt_hashmap_get(type_graph->name2id, child_type)))
    child_id = child_type;
  /* get parent node */
  parent_node = gt_hashmap_get(type_graph->nodemap, parent_id);
  gt_assert(parent_node);
  /* get child node */
  child_node = gt_hashmap_get(type_graph->nodemap, child_id);
  gt_assert(child_node);
  /* check for parent */
  return gt_type_node_has_parent(child_node, parent_node,
                                 type_graph->part_of_out_edges,
                                 type_graph->part_of_in_edges,
                                 type_graph->nodes, type_graph->id2name, 0);
}

// Assembly:
pushq %r15
pushq %r14
pushq %r12
pushq %rbx
pushq %rax
testq %rdi, %rdi
je 0x30cfc4
movq %rsi, %r15
testq %rsi, %rsi
je 0x30cfc4
movq %rdx, %r14
testq %rdx, %rdx
je 0x30cfc4
movq %rdi, %rbx
cmpb $0x0, 0x30(%rdi)
jne 0x30cf4a
movq %rbx, %rdi
callq 0x30cfd3
movb $0x1, 0x30(%rbx)
movq (%rbx), %rdi
movq %r15, %rsi
callq 0x105a11
testq %rax, %rax
cmovneq %rax, %r15
movq (%rbx), %rdi
movq %r14, %rsi
callq 0x105a11
movq %rax, %r12
movq 0x10(%rbx), %rdi
movq %r15, %rsi
callq 0x105a11
testq %rax, %rax
je 0x30cfc9
movq %rax, %r15
testq %r12, %r12
cmovneq %r12, %r14
movq 0x10(%rbx), %rdi
movq %r14, %rsi
callq 0x105a11
testq %rax, %rax
je 0x30cfce
movq 0x20(%rbx), %rdx
movq 0x28(%rbx), %rcx
movq 0x8(%rbx), %r9
movq 0x18(%rbx), %r8
movl $0x0, (%rsp)
movq %rax, %rdi
movq %r15, %rsi
callq 0x30d3de
addq $0x8, %rsp
popq %rbx
popq %r12
popq %r14
popq %r15
retq
callq 0x8ed74
callq 0x8ede6
callq 0x8edad
// File: /workspace/github_c_makefile_star2_O1/genometools[P]genometools/src/extended/type_graph.c
// Function: create_vertices
static void create_vertices(GtTypeGraph *type_graph)
{
  GtUword i, j;
  GtTypeNode *parent;
  const char *id;
  gt_assert(type_graph && !type_graph->ready);
  /* iterate over nodes */
  for (i = 0; i < gt_array_size(type_graph->nodes); i++) {
    GtTypeNode *node = *(GtTypeNode**) gt_array_get(type_graph->nodes, i);
    /* process is_a parents */
    for (j = 0; j < gt_type_node_is_a_size(node); j++) {
      id = gt_type_node_is_a_get(node, j);
      parent = gt_hashmap_get(type_graph->nodemap, id);
      gt_assert(parent);
      gt_type_node_add_is_a_vertex(node, parent);
    }
    /* process part_of parents */
    for (j = 0; j < gt_type_node_part_of_size(node); j++) {
      id = gt_type_node_part_of_get(node, j);
      parent = gt_hashmap_get(type_graph->nodemap, id);
      gt_assert(parent);
      gt_bool_matrix_set(type_graph->part_of_out_edges, gt_type_node_num(node),
                         gt_type_node_num(parent), true);
      gt_bool_matrix_set(type_graph->part_of_in_edges, gt_type_node_num(parent),
                         gt_type_node_num(node), true);
    }
  }
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
pushq %rax
cmpb $0x0, 0x30(%rdi)
jne 0x30d12f
movq %rdi, %rbx
movq 0x18(%rdi), %rdi
callq 0xd4a9a
testq %rax, %rax
je 0x30d116
xorl %r14d, %r14d
movq 0x18(%rbx), %rdi
movq %r14, %rsi
callq 0xd47ba
movq (%rax), %r15
movq %r15, %rdi
callq 0x30d2d2
testq %rax, %rax
je 0x30d05a
xorl %r12d, %r12d
movq %r15, %rdi
movq %r12, %rsi
callq 0x30d290
movq 0x10(%rbx), %rdi
movq %rax, %rsi
callq 0x105a11
testq %rax, %rax
je 0x30d125
movq %r15, %rdi
movq %rax, %rsi
callq 0x30d394
incq %r12
movq %r15, %rdi
callq 0x30d2d2
cmpq %rax, %r12
jb 0x30d01f
movq %r14, (%rsp)
movq %r15, %rdi
callq 0x30d379
testq %rax, %rax
je 0x30d0fd
xorl %r12d, %r12d
movq %r15, %rdi
movq %r12, %rsi
callq 0x30d337
movq 0x10(%rbx), %rdi
movq %rax, %rsi
callq 0x105a11
testq %rax, %rax
je 0x30d12a
movq %rax, %r13
movq 0x20(%rbx), %rbp
movq %r15, %rdi
callq 0x30d237
movq %rax, %r14
movq %r13, %rdi
callq 0x30d237
movq %rbp, %rdi
movq %r14, %rsi
movq %rax, %rdx
movl $0x1, %ecx
callq 0x348a28
movq 0x28(%rbx), %r14
movq %r13, %rdi
callq 0x30d237
movq %rax, %r13
movq %r15, %rdi
callq 0x30d237
movq %r14, %rdi
movq %r13, %rsi
movq %rax, %rdx
movl $0x1, %ecx
callq 0x348a28
incq %r12
movq %r15, %rdi
callq 0x30d379
cmpq %rax, %r12
jb 0x30d072
movq (%rsp), %r14
incq %r14
movq 0x18(%rbx), %rdi
callq 0xd4a9a
cmpq %rax, %r14
jb 0x30d000
addq $0x8, %rsp
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
retq
callq 0x8ee1f
callq 0x8ee58
callq 0x8ee91
// File: /workspace/github_c_makefile_star2_O1/genometools[P]genometools/src/extended/type_graph.c
// Function: gt_type_graph_is_a
bool gt_type_graph_is_a(GtTypeGraph *type_graph, const char *parent_type,
                        const char *child_type)
{
  const char *parent_id, *child_id;
  GtTypeNode *child_node;
  gt_assert(type_graph && parent_type && child_type);
  /* make sure graph is built */
  if (!type_graph->ready) {
    create_vertices(type_graph);
    type_graph->ready = true;
  }
  /* get parent ID, if the type is not mappable to an ID, assume it is the ID */
  if (!(parent_id = gt_hashmap_get(type_graph->name2id, parent_type)))
    parent_id = parent_type;
  /* get child ID, if the type is not mappable to an ID, assume it is the ID */
  if (!(child_id = gt_hashmap_get(type_graph->name2id, child_type)))
    child_id = child_type;
  /* get child node */
  child_node = gt_hashmap_get(type_graph->nodemap, child_id);
  gt_assert(child_node);
  /* check for parent */
  return gt_type_node_is_a(child_node, parent_id);
}

// Assembly:
pushq %r15
pushq %r14
pushq %r12
pushq %rbx
pushq %rax
testq %rdi, %rdi
je 0x30d1b5
movq %rsi, %rbx
testq %rsi, %rsi
je 0x30d1b5
movq %rdx, %r14
testq %rdx, %rdx
je 0x30d1b5
movq %rdi, %r15
cmpb $0x0, 0x30(%rdi)
jne 0x30d167
movq %r15, %rdi
callq 0x30cfd3
movb $0x1, 0x30(%r15)
movq (%r15), %rdi
movq %rbx, %rsi
callq 0x105a11
movq %rax, %r12
movq (%r15), %rdi
movq %r14, %rsi
callq 0x105a11
testq %rax, %rax
cmovneq %rax, %r14
movq 0x10(%r15), %rdi
movq %r14, %rsi
callq 0x105a11
testq %rax, %rax
je 0x30d1ba
testq %r12, %r12
cmovneq %r12, %rbx
movq %rax, %rdi
movq %rbx, %rsi
addq $0x8, %rsp
popq %rbx
popq %r12
popq %r14
popq %r15
jmp 0x30d802
callq 0x8eeca
callq 0x8ef03
nop
// File: /workspace/github_c_makefile_star2_O1/genometools[P]genometools/src/extended/type_node.c
// Function: gt_type_node_new
GtTypeNode* gt_type_node_new(GtUword num, const char *id)
{
  GtTypeNode *node = gt_calloc(1, sizeof *node);
  node->num = num;
  node->id = id;
  return node;
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
movq %rsi, %rbx
movq %rdi, %r14
leaq 0xdb72a(%rip), %rdx     # 0x3e88fb
movl $0x1, %edi
movl $0x38, %esi
movl $0x24, %ecx
callq 0x1093ef
movq %r14, (%rax)
movq %rbx, 0x8(%rax)
addq $0x8, %rsp
popq %rbx
popq %r14
retq
// File: /workspace/github_c_makefile_star2_O1/genometools[P]genometools/src/extended/type_node.c
// Function: gt_type_node_delete
void  gt_type_node_delete(GtTypeNode *type_node)
{
  if (!type_node) return;
  gt_hashmap_delete(type_node->cache);
  gt_array_delete(type_node->is_a_out_edges);
  gt_array_delete(type_node->part_of_list);
  gt_array_delete(type_node->is_a_list);
  gt_free(type_node);
}

// Assembly:
testq %rdi, %rdi
je 0x30d236
pushq %rbx
movq %rdi, %rbx
movq 0x28(%rdi), %rdi
callq 0x105f7d
movq 0x20(%rbx), %rdi
callq 0xd4ef4
movq 0x18(%rbx), %rdi
callq 0xd4ef4
movq 0x10(%rbx), %rdi
callq 0xd4ef4
leaq 0xdb6d3(%rip), %rsi     # 0x3e88fb
movq %rbx, %rdi
movl $0x31, %edx
popq %rbx
jmp 0x109670
retq
// File: /workspace/github_c_makefile_star2_O1/genometools[P]genometools/src/extended/type_node.c
// Function: gt_type_node_is_a_add
void gt_type_node_is_a_add(GtTypeNode *type_node, const char *id)
{
  gt_assert(type_node && id);
  if (!type_node->is_a_list)
    type_node->is_a_list = gt_array_new(sizeof (const char*));
  gt_array_add(type_node->is_a_list, id);
}

// Assembly:
pushq %rbx
subq $0x10, %rsp
movq %rsi, 0x8(%rsp)
testq %rdi, %rdi
je 0x30d28b
testq %rsi, %rsi
je 0x30d28b
movq %rdi, %rbx
cmpq $0x0, 0x10(%rdi)
jne 0x30d272
movl $0x8, %edi
callq 0xd46fc
movq %rax, 0x10(%rbx)
movq 0x10(%rbx), %rdi
leaq 0x8(%rsp), %rsi
movl $0x8, %edx
callq 0xd49ce
addq $0x10, %rsp
popq %rbx
retq
callq 0x8ef73
// File: /workspace/github_c_makefile_star2_O1/genometools[P]genometools/src/extended/type_node.c
// Function: gt_type_node_part_of_add
void gt_type_node_part_of_add(GtTypeNode *type_node, const char *id)
{
  gt_assert(type_node && id);
  if (!type_node->part_of_list)
    type_node->part_of_list = gt_array_new(sizeof (const char*));
  gt_array_add(type_node->part_of_list, id);
}

// Assembly:
pushq %rbx
subq $0x10, %rsp
movq %rsi, 0x8(%rsp)
testq %rdi, %rdi
je 0x30d332
testq %rsi, %rsi
je 0x30d332
movq %rdi, %rbx
cmpq $0x0, 0x18(%rdi)
jne 0x30d319
movl $0x8, %edi
callq 0xd46fc
movq %rax, 0x18(%rbx)
movq 0x18(%rbx), %rdi
leaq 0x8(%rsp), %rsi
movl $0x8, %edx
callq 0xd49ce
addq $0x10, %rsp
popq %rbx
retq
callq 0x8f018
// File: /workspace/github_c_makefile_star2_O1/genometools[P]genometools/src/extended/type_node.c
// Function: gt_type_node_add_is_a_vertex
void gt_type_node_add_is_a_vertex(GtTypeNode *src, const GtTypeNode *dst)
{
  gt_assert(src && dst);
  if (!src->is_a_out_edges)
    src->is_a_out_edges = gt_array_new(sizeof (GtTypeNode*));
  gt_array_add(src->is_a_out_edges, dst);
}

// Assembly:
pushq %rbx
subq $0x10, %rsp
movq %rsi, 0x8(%rsp)
testq %rdi, %rdi
je 0x30d3d9
testq %rsi, %rsi
je 0x30d3d9
movq %rdi, %rbx
cmpq $0x0, 0x20(%rdi)
jne 0x30d3c0
movl $0x8, %edi
callq 0xd46fc
movq %rax, 0x20(%rbx)
movq 0x20(%rbx), %rdi
leaq 0x8(%rsp), %rsi
movl $0x8, %edx
callq 0xd49ce
addq $0x10, %rsp
popq %rbx
retq
callq 0x8f0bd