// File: /workspace/github_cpp_makefile_star2_O2/millanek[P]evo/./process_vcf_coding_sequences.h
// Function: pNsets::pNsets(std::basic_ifstream<char, std::char_traits<char>>*&)
pNsets(std::ifstream*& setsFile) {
        string line;
        string set1String; string set2String; string set3String;
        getline(*setsFile, set1String);
        getline(*setsFile, set2String);
        getline(*setsFile, set3String);
        std::vector<string> set1 = split(set1String, ',');
        std::vector<string> set2 = split(set2String, ',');
        std::vector<string> set3 = split(set3String, ',');
        for (int i = 0; i < set1.size(); i++) {
            set1Loci.insert(atoi(set1[i].c_str()));
        }
        for (int i = 0; i < set2.size(); i++) {
            set2Loci.insert(atoi(set2[i].c_str()));
        }
        for (int i = 0; i < set3.size(); i++) {
            set3Loci.insert(atoi(set3[i].c_str()));
        }
        std::cerr << "set 1: "; print_vector(set1, std::cerr);
        std::cerr << "set 2: "; print_vector(set2, std::cerr);
        std::cerr << "set 3: "; print_vector(set3, std::cerr);
        initialised = true;
    }

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
subq $0x118, %rsp            # imm = 0x118
movq %rdi, %rbx
leaq 0x30(%rdi), %rax
movq %rax, (%rdi)
pushq $0x1
popq %rax
movq %rax, 0x8(%rdi)
xorps %xmm0, %xmm0
movups %xmm0, 0x10(%rdi)
movl $0x3f800000, %ecx       # imm = 0x3F800000
movl %ecx, 0x20(%rdi)
movups %xmm0, 0x28(%rdi)
leaq 0x68(%rdi), %rdx
movq %rdx, 0x38(%rdi)
movq %rax, 0x40(%rdi)
movups %xmm0, 0x48(%rdi)
movl %ecx, 0x58(%rdi)
movups %xmm0, 0x60(%rdi)
leaq 0xa0(%rdi), %rdx
movq %rdx, 0x70(%rdi)
movq %rax, 0x78(%rdi)
movups %xmm0, 0x80(%rdi)
movl %ecx, 0x90(%rdi)
movups %xmm0, 0x98(%rdi)
leaq 0x108(%rsp), %rax
movq %rax, -0x10(%rax)
andq $0x0, -0x8(%rax)
movq %rsi, %r12
leaq 0x38(%rdi), %r14
xorl %ecx, %ecx
leaq 0xe8(%rsp), %rdx
movq %rdx, -0x10(%rdx)
andq $0x0, -0x8(%rdx)
movb %cl, (%rax)
movb %cl, (%rdx)
leaq 0xc8(%rsp), %rax
movq %rax, -0x10(%rax)
andq $0x0, -0x8(%rax)
leaq 0xa8(%rsp), %rdx
movq %rdx, -0x10(%rdx)
andq $0x0, -0x8(%rdx)
leaq 0x70(%rdi), %r15
movb %cl, (%rax)
movb %cl, (%rdx)
movq (%rsi), %rdi
leaq 0xd8(%rsp), %rsi
callq 0x80a0
movq (%r12), %rdi
leaq 0xb8(%rsp), %rsi
callq 0x80a0
movq (%r12), %rdi
leaq 0x98(%rsp), %rsi
callq 0x80a0
leaq 0x38(%rsp), %rdi
leaq 0xd8(%rsp), %rsi
pushq $0x2c
popq %rdx
callq 0x40349
leaq 0x20(%rsp), %rdi
leaq 0xb8(%rsp), %rsi
pushq $0x2c
popq %rdx
callq 0x40349
leaq 0x8(%rsp), %rdi
leaq 0x98(%rsp), %rsi
pushq $0x2c
popq %rdx
callq 0x40349
xorl %r13d, %r13d
movq %rsp, %r12
xorl %ebp, %ebp
movq 0x38(%rsp), %rax
movq 0x40(%rsp), %rcx
subq %rax, %rcx
sarq $0x5, %rcx
cmpq %rbp, %rcx
jbe 0x378ea
movq (%rax,%r13), %rdi
callq 0x86f0
cltq
movq %rax, (%rsp)
movq %rbx, %rdi
movq %r12, %rsi
callq 0x37c96
incq %rbp
addq $0x20, %r13
jmp 0x378b1
xorl %r13d, %r13d
movq %rsp, %r12
xorl %ebp, %ebp
movq 0x20(%rsp), %rax
movq 0x28(%rsp), %rcx
subq %rax, %rcx
sarq $0x5, %rcx
cmpq %rbp, %rcx
jbe 0x3792b
movq (%rax,%r13), %rdi
callq 0x86f0
cltq
movq %rax, (%rsp)
movq %r14, %rdi
movq %r12, %rsi
callq 0x37c96
incq %rbp
addq $0x20, %r13
jmp 0x378f2
xorl %r13d, %r13d
movq %rsp, %r12
xorl %ebp, %ebp
movq 0x8(%rsp), %rax
movq 0x10(%rsp), %rcx
subq %rax, %rcx
sarq $0x5, %rcx
cmpq %rbp, %rcx
jbe 0x3796c
movq (%rax,%r13), %rdi
callq 0x86f0
cltq
movq %rax, (%rsp)
movq %r15, %rdi
movq %r12, %rsi
callq 0x37c96
incq %rbp
addq $0x20, %r13
jmp 0x37933
movq 0xa5675(%rip), %rdi     # 0xdcfe8
leaq 0x64e12(%rip), %rsi     # 0x9c78c
callq 0x8480
leaq 0x80(%rsp), %rdi
leaq 0x38(%rsp), %rsi
callq 0x297dc
movq 0xa5650(%rip), %rsi     # 0xdcfe8
leaq 0x80(%rsp), %rdi
pushq $0x9
popq %rdx
pushq $0x1
popq %rcx
callq 0x2ea24
leaq 0x80(%rsp), %rdi
callq 0x28a08
movq 0xa5629(%rip), %rdi     # 0xdcfe8
leaq 0x64dce(%rip), %rsi     # 0x9c794
callq 0x8480
leaq 0x68(%rsp), %rdi
leaq 0x20(%rsp), %rsi
callq 0x297dc
movq 0xa5607(%rip), %rsi     # 0xdcfe8
leaq 0x68(%rsp), %rdi
pushq $0x9
popq %rdx
pushq $0x1
popq %rcx
callq 0x2ea24
leaq 0x68(%rsp), %rdi
callq 0x28a08
movq 0xa55e6(%rip), %rdi     # 0xdcfe8
leaq 0x64d93(%rip), %rsi     # 0x9c79c
callq 0x8480
leaq 0x50(%rsp), %rdi
leaq 0x8(%rsp), %rsi
callq 0x297dc
movq 0xa55c4(%rip), %rsi     # 0xdcfe8
leaq 0x50(%rsp), %rdi
pushq $0x9
popq %rdx
pushq $0x1
popq %rcx
callq 0x2ea24
leaq 0x50(%rsp), %rdi
callq 0x28a08
movb $0x1, 0xd8(%rbx)
leaq 0x8(%rsp), %rdi
callq 0x28a08
leaq 0x20(%rsp), %rdi
callq 0x28a08
leaq 0x38(%rsp), %rdi
callq 0x28a08
leaq 0x98(%rsp), %rdi
callq 0x8978
leaq 0xb8(%rsp), %rdi
callq 0x8978
leaq 0xd8(%rsp), %rdi
callq 0x8978
leaq 0xf8(%rsp), %rdi
callq 0x8978
addq $0x118, %rsp            # imm = 0x118
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
retq
movq %rax, %r12
leaq 0x50(%rsp), %rdi
jmp 0x37ac8
movq %rax, %r12
leaq 0x68(%rsp), %rdi
jmp 0x37ac8
movq %rax, %r12
leaq 0x80(%rsp), %rdi
callq 0x28a08
jmp 0x37ae9
movq %rax, %r12
jmp 0x37af3
movq %rax, %r12
jmp 0x37afd
jmp 0x37adb
movq %rax, %r12
jmp 0x37b07
jmp 0x37ae6
jmp 0x37ae6
jmp 0x37ae6
movq %rax, %r12
leaq 0x8(%rsp), %rdi
callq 0x28a08
leaq 0x20(%rsp), %rdi
callq 0x28a08
leaq 0x38(%rsp), %rdi
callq 0x28a08
leaq 0x98(%rsp), %rdi
callq 0x8978
leaq 0xb8(%rsp), %rdi
callq 0x8978
leaq 0xd8(%rsp), %rdi
callq 0x8978
leaq 0xf8(%rsp), %rdi
callq 0x8978
movq %r15, %rdi
callq 0x38002
movq %r14, %rdi
callq 0x38002
movq %rbx, %rdi
callq 0x38002
movq %r12, %rdi
callq 0x8870
nop