// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/tools/gt_encseq2spm.c
// Function: gt_encseq2spm_option_parser_new
static GtOptionParser* gt_encseq2spm_option_parser_new(void *tool_arguments)
{
  GtEncseq2spmArguments *arguments = tool_arguments;
  GtOptionParser *op;
  GtOption *option, *optionparts, *optionmemlimit;

  gt_assert(arguments);

  /* init */
  op = gt_option_parser_new("[option ...] [file]",
                            "Compute suffix prefix matches "
                            "from encoded sequence.");

  /* -l */
  option = gt_option_new_uint_min("l", "specify the minimum length",
                                  &arguments->minmatchlength, 0, 1U);
  gt_option_parser_add_option(op, option);
  gt_option_is_mandatory(option);

  /* -parts */
  optionparts = gt_option_new_uint("parts", "specify the number of parts",
                                  &arguments->numofparts, 0U);
  gt_option_parser_add_option(op, optionparts);

  /* -memlimit */
  optionmemlimit = gt_option_new_string("memlimit",
                       "specify maximal amount of memory to be used during "
                       "index construction (in bytes, the keywords 'MB' "
                       "and 'GB' are allowed)",
                       arguments->memlimitarg, NULL);
  gt_option_parser_add_option(op, optionmemlimit);
  gt_option_exclude(optionmemlimit, optionparts);
  arguments->refoptionmemlimit = gt_option_ref(optionmemlimit);

  /* -checksuftab */
  option = gt_option_new_bool("checksuftab", "check the suffix table",
                             &arguments->checksuftab, false);
  gt_option_parser_add_option(op, option);
  gt_option_is_development_option(option);

  /* -singlestrand */
  option = gt_option_new_bool("singlestrand", "use only the forward strand "
                              "of the sequence",
                              &arguments->singlestrand, false);
  gt_option_parser_add_option(op, option);

  /* -spm */
  option = gt_option_new_string("spm", "specify output for spms",
                                arguments->spmspec, NULL);
  gt_option_parser_add_option(op, option);

  /* -ii */
  option = gt_option_new_string("ii", "specify the input sequence",
                                arguments->encseqinput, NULL);
  gt_option_parser_add_option(op, option);
  gt_option_is_mandatory(option);

  /* -onlyaccum */
  option = gt_option_new_bool("onlyaccum", "only accumulate codes",
                             &arguments->onlyaccum, false);
  gt_option_parser_add_option(op, option);
  gt_option_is_development_option(option);

  /* -onlyallfirstcodes */
  option = gt_option_new_bool("onlyallfirstcodes", "only determines allcodes",
                              &arguments->onlyallfirstcodes, false);
  gt_option_parser_add_option(op, option);
  gt_option_is_development_option(option);

  /* -addbscachedepth */
  option = gt_option_new_uint("addbscachedepth", "only determines allcodes",
                              &arguments->addbscache_depth, 5U);
  gt_option_parser_add_option(op, option);
  gt_option_is_development_option(option);

  /* -phase2extra */
  option = gt_option_new_string("phase2extra",
                       "specify  amount of additional space required for "
                       "the second phase of the computation involving the "
                       "processing of the intervals (in bytes, "
                       "the keywords 'MB' and 'GB' are allowed)",
                       arguments->phase2extraarg, NULL);
  gt_option_parser_add_option(op, option);
  arguments->refoptionphase2extra = gt_option_ref(option);
  gt_option_is_development_option(option);

  /* -radixlarge */
  option = gt_option_new_bool("radixlarge", "use large tables for radixsort",
                              &arguments->radixlarge, false);
  gt_option_parser_add_option(op, option);
  gt_option_is_development_option(option);

  /* -radixparts */
  option = gt_option_new_uint("radixparts", "specify the number of parts "
                              "for radixsort",
                              &arguments->radixparts, 1U);
  gt_option_parser_add_option(op, option);
  gt_option_is_development_option(option);

  /* -singlescan */
  option = gt_option_new_uint("singlescan", "run a single scan: 1=fast; "
                              "2=fast with check; 3=fast with output; "
                              "4=sfx-mapped4-version",
                              &arguments->singlescan, 0);
  gt_option_parser_add_option(op, option);
  gt_option_is_development_option(option);

  /* -forcek */
  option = gt_option_new_uint("forcek", "specify the value of k",
                              &arguments->forcek, 0);
  gt_option_is_development_option(option);
  gt_option_parser_add_option(op, option);

  option = gt_option_new_verbose(&arguments->verbose);
  gt_option_parser_add_option(op, option);

  return op;
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r12
pushq %rbx
testq %rdi, %rdi
je 0x2443f
movq %rdi, %rbx
leaq 0x2c6557(%rip), %rdi    # 0x2ea6a1
leaq 0x2c6564(%rip), %rsi    # 0x2ea6b5
callq 0x97df5
movq %rax, %r14
leaq 0x8(%rbx), %rdx
leaq 0x303e0e(%rip), %rdi    # 0x327f72
leaq 0x2c657f(%rip), %rsi    # 0x2ea6ea
pushq $0x1
popq %rbp
xorl %ecx, %ecx
movl %ebp, %r8d
callq 0x9abef
movq %rax, %r15
movq %r14, %rdi
movq %rax, %rsi
callq 0x97f31
movq %r15, %rdi
callq 0x9ae37
leaq 0xc(%rbx), %rdx
leaq 0x2d285e(%rip), %rdi    # 0x2f69f7
leaq 0x2c6565(%rip), %rsi    # 0x2ea705
xorl %ecx, %ecx
callq 0x9abcd
movq %rax, %r15
movq %r14, %rdi
movq %rax, %rsi
callq 0x97f31
movq 0x40(%rbx), %rdx
leaq 0x360d68(%rip), %rdi    # 0x384f28
leaq 0x2c655a(%rip), %rsi    # 0x2ea721
xorl %ecx, %ecx
callq 0x9ad12
movq %rax, %r12
movq %r14, %rdi
movq %rax, %rsi
callq 0x97f31
movq %r12, %rdi
movq %r15, %rsi
callq 0x9b38d
movq %r12, %rdi
callq 0x97db0
movq %rax, 0x50(%rbx)
leaq 0x2c65a0(%rip), %rdi    # 0x2ea79a
leaq 0x2c65a5(%rip), %rsi    # 0x2ea7a6
movq %rbx, %rdx
xorl %ecx, %ecx
callq 0x9a997
movq %rax, %r15
movq %r14, %rdi
movq %rax, %rsi
callq 0x97f31
movq %r15, %rdi
callq 0x9b10a
leaq 0x1(%rbx), %rdx
leaq 0x2c6591(%rip), %rdi    # 0x2ea7bd
leaq 0x2c6597(%rip), %rsi    # 0x2ea7ca
xorl %ecx, %ecx
callq 0x9a997
movq %r14, %rdi
movq %rax, %rsi
callq 0x97f31
movq 0x38(%rbx), %rdx
leaq 0x2c6827(%rip), %rdi    # 0x2eaa77
leaq 0x2c659f(%rip), %rsi    # 0x2ea7f6
xorl %ecx, %ecx
callq 0x9ad12
movq %r14, %rdi
movq %rax, %rsi
callq 0x97f31
movq 0x30(%rbx), %rdx
leaq 0x32f65f(%rip), %rdi    # 0x3538d3
leaq 0x2c6593(%rip), %rsi    # 0x2ea80e
xorl %ecx, %ecx
callq 0x9ad12
movq %rax, %r15
movq %r14, %rdi
movq %rax, %rsi
callq 0x97f31
movq %r15, %rdi
callq 0x9ae37
leaq 0x4(%rbx), %rdx
leaq 0x2c6586(%rip), %rdi    # 0x2ea829
leaq 0x2c6589(%rip), %rsi    # 0x2ea833
xorl %ecx, %ecx
callq 0x9a997
movq %rax, %r15
movq %r14, %rdi
movq %rax, %rsi
callq 0x97f31
movq %r15, %rdi
callq 0x9b10a
leaq 0x5(%rbx), %rdx
leaq 0x2c6577(%rip), %rdi    # 0x2ea849
leaq 0x2c6582(%rip), %r15    # 0x2ea85b
movq %r15, %rsi
xorl %ecx, %ecx
callq 0x9a997
movq %rax, %r12
movq %r14, %rdi
movq %rax, %rsi
callq 0x97f31
movq %r12, %rdi
callq 0x9b10a
leaq 0x18(%rbx), %rdx
leaq 0x2c6570(%rip), %rdi    # 0x2ea874
pushq $0x5
popq %rcx
movq %r15, %rsi
callq 0x9abcd
movq %rax, %r15
movq %r14, %rdi
movq %rax, %rsi
callq 0x97f31
movq %r15, %rdi
callq 0x9b10a
movq 0x48(%rbx), %rdx
leaq 0x2c6554(%rip), %rdi    # 0x2ea884
leaq 0x2c6559(%rip), %rsi    # 0x2ea890
xorl %ecx, %ecx
callq 0x9ad12
movq %rax, %r15
movq %r14, %rdi
movq %rax, %rsi
callq 0x97f31
movq %r15, %rdi
callq 0x97db0
movq %rax, 0x58(%rbx)
movq %r15, %rdi
callq 0x9b10a
leaq 0x6(%rbx), %rdx
leaq 0x2c65d7(%rip), %rdi    # 0x2ea942
leaq 0x2c65db(%rip), %rsi    # 0x2ea94d
xorl %ecx, %ecx
callq 0x9a997
movq %rax, %r15
movq %r14, %rdi
movq %rax, %rsi
callq 0x97f31
movq %r15, %rdi
callq 0x9b10a
leaq 0x10(%rbx), %rdx
leaq 0x2c65d2(%rip), %rdi    # 0x2ea96c
leaq 0x2c65d6(%rip), %rsi    # 0x2ea977
movl %ebp, %ecx
callq 0x9abcd
movq %rax, %r15
movq %r14, %rdi
movq %rax, %rsi
callq 0x97f31
movq %r15, %rdi
callq 0x9b10a
leaq 0x14(%rbx), %rdx
leaq 0x2c65d8(%rip), %rdi    # 0x2ea9a1
leaq 0x2c65dc(%rip), %rsi    # 0x2ea9ac
xorl %ecx, %ecx
callq 0x9abcd
movq %rax, %r15
movq %r14, %rdi
movq %rax, %rsi
callq 0x97f31
movq %r15, %rdi
callq 0x9b10a
leaq 0x1c(%rbx), %rdx
leaq 0x2c660c(%rip), %rdi    # 0x2eaa04
leaq 0x2c660c(%rip), %rsi    # 0x2eaa0b
xorl %ecx, %ecx
callq 0x9abcd
movq %rax, %r15
movq %rax, %rdi
callq 0x9b10a
movq %r14, %rdi
movq %r15, %rsi
callq 0x97f31
addq $0x2, %rbx
movq %rbx, %rdi
callq 0x9a9b6
movq %r14, %rdi
movq %rax, %rsi
callq 0x97f31
movq %r14, %rax
popq %rbx
popq %r12
popq %r14
popq %r15
popq %rbp
retq
movq 0x413b22(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x2c0bc3(%rip), %rsi    # 0x2e5013
leaq 0x3241fc(%rip), %rdx    # 0x348653
leaq 0x2c6223(%rip), %rcx    # 0x2ea681
leaq 0x2c6202(%rip), %r8     # 0x2ea667
pushq $0x62
popq %r9
xorl %eax, %eax
callq 0x17a50
callq 0x17390