// File: /workspace/github_cpp_makefile_star2_O1/ncbi[P]amr/alignment.cpp
// Function: Alignment_sp::SeqChange::finishPos(unsigned long)
bool SeqChange::finishPos (size_t flankingLen)
{
  setStartStopRef ();
  setStartTarget ();
  setNeighborhoodMismatch (flankingLen);
  ASSERT (! reference. empty ());
  if (verbose ())
    saveText (cout);
	return neighborhoodMismatch <= 0.04;   // PAR  // PD-3191
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
subq $0x108, %rsp            # imm = 0x108
movq %rsi, %r14
movq %rdi, %rbx
callq 0x5da44
movq %rbx, %rdi
callq 0x5dfaa
movq %rbx, %rdi
movq %r14, %rsi
callq 0x5e502
callq 0xb070
movl $0x0, (%rax)
cmpq $0x0, 0x30(%rbx)
je 0x5d780
xorl %edi, %edi
callq 0x1bf4c
testb %al, %al
je 0x5d75b
movq 0x5b84d(%rip), %rsi     # 0xb8fa0
movq %rbx, %rdi
callq 0x68018
movsd 0x398bd(%rip), %xmm0    # 0x97020
ucomisd 0x80(%rbx), %xmm0
setae %al
addq $0x108, %rsp            # imm = 0x108
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
retq
callq 0xb6b0
testl %eax, %eax
jne 0x5d818
leaq 0x98(%rsp), %r14
movq %r14, -0x10(%r14)
leaq 0x39888(%rip), %rsi     # 0x97028
leaq 0x39897(%rip), %rdx     # 0x9703e
leaq 0x88(%rsp), %rdi
callq 0xdc76
leaq 0xa8(%rsp), %rdi
movl $0x129, %esi            # imm = 0x129
callq 0xe1a8
leaq 0xc8(%rsp), %rdi
leaq 0x88(%rsp), %rsi
leaq 0xa8(%rsp), %rdx
callq 0xe100
leaq 0x359e7(%rip), %rsi     # 0x931d1
leaq 0xc8(%rsp), %rdi
callq 0xbb10
leaq 0x18(%rsp), %r15
movq %r15, -0x10(%r15)
movq (%rax), %rdx
movq %rax, %rcx
addq $0x10, %rcx
cmpq %rcx, %rdx
jne 0x5d822
movups (%rcx), %xmm0
movups %xmm0, (%r15)
jmp 0x5d82f
movl $0x1, %edi
callq 0xb6d0
movq %rdx, 0x8(%rsp)
movq (%rcx), %rdx
movq %rdx, 0x18(%rsp)
movq 0x8(%rax), %rdx
movq %rdx, 0x10(%rsp)
movq %rcx, (%rax)
movq $0x0, 0x8(%rax)
movb $0x0, 0x10(%rax)
leaq 0x78(%rsp), %r12
movq %r12, -0x10(%r12)
leaq 0x39c7d(%rip), %rsi     # 0x974d5
leaq 0x39ca5(%rip), %rdx     # 0x97504
leaq 0x68(%rsp), %rdi
callq 0xdc76
leaq 0x36041(%rip), %rsi     # 0x938b1
leaq 0x68(%rsp), %rdi
callq 0xbb10
leaq 0x38(%rsp), %r13
movq %r13, -0x10(%r13)
movq (%rax), %rdx
movq %rax, %rcx
addq $0x10, %rcx
cmpq %rcx, %rdx
jne 0x5d89c
movups (%rcx), %xmm0
movups %xmm0, (%r13)
jmp 0x5d8a9
movq %rdx, 0x28(%rsp)
movq (%rcx), %rdx
movq %rdx, 0x38(%rsp)
movq 0x8(%rax), %rsi
leaq 0x28(%rsp), %rdx
movq %rsi, 0x8(%rdx)
movq %rcx, (%rax)
movq $0x0, 0x8(%rax)
movb $0x0, 0x10(%rax)
leaq 0xe8(%rsp), %rdi
leaq 0x8(%rsp), %rsi
callq 0xe100
leaq 0x39a0c(%rip), %rsi     # 0x972ea
leaq 0xe8(%rsp), %rdi
callq 0xbb10
leaq 0x58(%rsp), %rbp
movq %rbp, -0x10(%rbp)
movq (%rax), %rdx
movq %rax, %rcx
addq $0x10, %rcx
cmpq %rcx, %rdx
jne 0x5d90c
movups (%rcx), %xmm0
movups %xmm0, (%rbp)
jmp 0x5d919
movq %rdx, 0x48(%rsp)
movq (%rcx), %rdx
movq %rdx, 0x58(%rsp)
movq 0x8(%rax), %rdx
leaq 0x48(%rsp), %rdi
movq %rdx, 0x8(%rdi)
movq %rcx, (%rax)
movq $0x0, 0x8(%rax)
movb $0x0, 0x10(%rax)
callq 0x1151b
movq %rax, %rbx
movq 0x48(%rsp), %rdi
cmpq %rbp, %rdi
je 0x5d959
movq 0x58(%rsp), %rsi
incq %rsi
callq 0xb5a0
jmp 0x5d959
movq %rax, %rbx
leaq 0xf8(%rsp), %rax
movq -0x10(%rax), %rdi
cmpq %rax, %rdi
je 0x5d97f
movq 0xf8(%rsp), %rsi
incq %rsi
callq 0xb5a0
jmp 0x5d97f
movq %rax, %rbx
movq 0x28(%rsp), %rdi
cmpq %r13, %rdi
je 0x5d99b
movq 0x38(%rsp), %rsi
incq %rsi
callq 0xb5a0
jmp 0x5d99b
movq %rax, %rbx
movq 0x68(%rsp), %rdi
cmpq %r12, %rdi
je 0x5d9b7
movq 0x78(%rsp), %rsi
incq %rsi
callq 0xb5a0
jmp 0x5d9b7
movq %rax, %rbx
movq 0x8(%rsp), %rdi
cmpq %r15, %rdi
je 0x5d9d3
movq 0x18(%rsp), %rsi
incq %rsi
callq 0xb5a0
jmp 0x5d9d3
movq %rax, %rbx
leaq 0xd8(%rsp), %rax
movq -0x10(%rax), %rdi
cmpq %rax, %rdi
je 0x5d9f9
movq 0xd8(%rsp), %rsi
incq %rsi
callq 0xb5a0
jmp 0x5d9f9
movq %rax, %rbx
leaq 0xb8(%rsp), %rax
movq -0x10(%rax), %rdi
cmpq %rax, %rdi
je 0x5da1f
movq 0xb8(%rsp), %rsi
incq %rsi
callq 0xb5a0
jmp 0x5da1f
movq %rax, %rbx
movq 0x88(%rsp), %rdi
cmpq %r14, %rdi
je 0x5da3c
movq 0x98(%rsp), %rsi
incq %rsi
callq 0xb5a0
movq %rbx, %rdi
callq 0xba60