// File: /workspace/github_c_makefile_star2_O3/genometools[P]genometools/src/tools/gt_congruence.c
// Function: gt_cge_spacedseed_option_parser_new
static GtOptionParser
            *gt_cge_spacedseed_option_parser_new(void *tool_arguments)
{
  GtOptionParser *op;
  GtOption *option,
           *optionesaindex,
           *optionpckindex;
  Cge_spacedseed_options *arguments = tool_arguments;

  op = gt_option_parser_new("[options]",
                            "Match spaced seeds.");
  gt_option_parser_set_mail_address(op,"<kurtz@zbh.uni-hamburg.de>");

  optionesaindex = gt_option_new_string("esa",
                                     "Specify index (enhanced suffix array)",
                                     arguments->str_inputindex, NULL);
  gt_option_parser_add_option(op, optionesaindex);
  arguments->refoptionesaindex = gt_option_ref(optionesaindex);

  optionpckindex = gt_option_new_string("pck",
                                     "Specify index (packed index)",
                                     arguments->str_inputindex, NULL);
  gt_option_parser_add_option(op, optionpckindex);
  arguments->refoptionpckindex = gt_option_ref(optionpckindex);
  gt_option_exclude(optionesaindex,optionpckindex);
  gt_option_is_mandatory_either(optionesaindex,optionpckindex);

  option = gt_option_new_filename_array("q",
                                    "Specify files containing the "
                                    "query sequences",
                                    arguments->queryfilenames);
  gt_option_parser_add_option(op, option);
  gt_option_is_mandatory(option);

  option = gt_option_new_bool("cmp","compare results of offline and online "
                              "searches",&arguments->docompare,false);
  gt_option_parser_add_option(op, option);
  gt_option_is_development_option(option);

  option = gt_option_new_verbose(&arguments->verbose);
  gt_option_parser_add_option(op, option);

  return op;
}

// Assembly:
pushq %r15
pushq %r14
pushq %r12
pushq %rbx
pushq %rax
movq %rdi, %r14
leaq 0x2bc085(%rip), %rdi    # 0x35d0b9
leaq 0x2a8ca7(%rip), %rsi    # 0x349ce2
callq 0x107bfe
movq %rax, %rbx
leaq 0x2a5282(%rip), %rsi    # 0x3462cc
movq %rax, %rdi
callq 0x107e5c
movq 0x8(%r14), %rdx
leaq 0x2b8bc8(%rip), %rdi    # 0x359c25
leaq 0x2a8c92(%rip), %rsi    # 0x349cf6
xorl %ecx, %ecx
callq 0x10a770
movq %rax, %r15
movq %rbx, %rdi
movq %rax, %rsi
callq 0x107cc0
movq %r15, %rdi
callq 0x107bec
movq %rax, 0x18(%r14)
movq 0x8(%r14), %rdx
leaq 0x2ac71e(%rip), %rdi    # 0x34d7ae
leaq 0x2a8c85(%rip), %rsi    # 0x349d1c
xorl %ecx, %ecx
callq 0x10a770
movq %rax, %r12
movq %rbx, %rdi
movq %rax, %rsi
callq 0x107cc0
movq %r12, %rdi
callq 0x107bec
movq %rax, 0x20(%r14)
movq %r15, %rdi
movq %r12, %rsi
callq 0x10ab96
movq %r15, %rdi
movq %r12, %rsi
callq 0x10a88b
movq 0x10(%r14), %rdx
leaq 0x2e556f(%rip), %rdi    # 0x386648
leaq 0x2a8c59(%rip), %rsi    # 0x349d39
callq 0x10a7df
movq %rax, %r15
movq %rbx, %rdi
movq %rax, %rsi
callq 0x107cc0
movq %r15, %rdi
callq 0x10a87b
leaq 0x1(%r14), %rdx
leaq 0x2c9d59(%rip), %rdi    # 0x36ae5f
leaq 0x2a8c59(%rip), %rsi    # 0x349d66
xorl %ecx, %ecx
callq 0x10a235
movq %rax, %r15
movq %rbx, %rdi
movq %rax, %rsi
callq 0x107cc0
movq %r15, %rdi
callq 0x10a9d4
addq $0x2, %r14
movq %r14, %rdi
callq 0x10a257
movq %rbx, %rdi
movq %rax, %rsi
callq 0x107cc0
movq %rbx, %rax
addq $0x8, %rsp
popq %rbx
popq %r12
popq %r14
popq %r15
retq