// File: medvedevgroup[P]varmatch/src/./wholegenome.h
// Function: SequencePath::SequencePath(int, int)
SequencePath(int n, int v)
    {
        reference_length = n;
        for(int i = 0; i < 4; i++){
            string_sequences[i].resize(n, ".");
            // default value is "."
            donor_sequences[i] = "";
        }
        current_genome_pos = -1;
        score = 0;
        removable = false;
        same_donor_len = false;
        current_equal_donor_pos[0] = -1;
        current_equal_donor_pos[1] = -1;
        reached_sync_num = 0;

        for(int i = 0; i < v; i++){
            choice_vector.push_back(-89);
        }
    }

// Assembly:
pushq %rbp
movq %rsp, %rbp
subq $0x110, %rsp            # imm = 0x110
movq %rdi, -0x8(%rbp)
movl %esi, -0xc(%rbp)
movl %edx, -0x10(%rbp)
movq -0x8(%rbp), %rax
movq %rax, -0x78(%rbp)
addq $0x8, %rax
movq %rax, -0x70(%rbp)
movq %rax, %rcx
addq $0x60, %rcx
movq %rcx, -0x68(%rbp)
movq %rax, -0x60(%rbp)
movq -0x60(%rbp), %rdi
movq %rdi, -0x80(%rbp)
callq 0x12d30
movq -0x80(%rbp), %rax
movq -0x68(%rbp), %rcx
addq $0x18, %rax
cmpq %rcx, %rax
movq %rax, -0x60(%rbp)
jne 0x351a4
movq -0x78(%rbp), %rax
addq $0x68, %rax
movq %rax, -0x98(%rbp)
movq %rax, %rcx
addq $0x60, %rcx
movq %rcx, -0x90(%rbp)
movq %rax, -0x88(%rbp)
movq -0x88(%rbp), %rdi
movq %rdi, -0xa0(%rbp)
callq 0x3b310
movq -0xa0(%rbp), %rax
movq -0x90(%rbp), %rcx
addq $0x30, %rax
cmpq %rcx, %rax
movq %rax, -0x88(%rbp)
jne 0x351ea
movq -0x78(%rbp), %rax
addq $0xd0, %rax
movq %rax, -0xb8(%rbp)
movq %rax, %rcx
addq $0x80, %rcx
movq %rcx, -0xb0(%rbp)
movq %rax, -0xa8(%rbp)
movq -0xa8(%rbp), %rdi
movq %rdi, -0xc0(%rbp)
callq 0x65e0
movq -0xc0(%rbp), %rax
movq -0xb0(%rbp), %rcx
addq $0x20, %rax
cmpq %rcx, %rax
movq %rax, -0xa8(%rbp)
jne 0x35244
movq -0x78(%rbp), %rdi
addq $0x168, %rdi            # imm = 0x168
movq %rdi, -0xc8(%rbp)
callq 0x32270
movq -0x78(%rbp), %rax
movl -0xc(%rbp), %ecx
movl %ecx, (%rax)
movl $0x0, -0x14(%rbp)
cmpl $0x4, -0x14(%rbp)
jge 0x35391
movq -0x78(%rbp), %rax
movslq -0x14(%rbp), %rcx
leaq (%rcx,%rcx,2), %rcx
leaq 0x8(%rax,%rcx,8), %rax
movq %rax, -0xe0(%rbp)
movslq -0xc(%rbp), %rax
movq %rax, -0xd8(%rbp)
leaq -0x39(%rbp), %rdi
movq %rdi, -0xd0(%rbp)
callq 0x6760
movq -0xd0(%rbp), %rdx
leaq 0x2074b(%rip), %rsi     # 0x55a32
leaq -0x38(%rbp), %rdi
callq 0x9680
jmp 0x352f2
movq -0xd8(%rbp), %rsi
movq -0xe0(%rbp), %rdi
leaq -0x38(%rbp), %rdx
callq 0x3b330
jmp 0x3530b
leaq -0x38(%rbp), %rdi
callq 0x6828
leaq -0x39(%rbp), %rdi
callq 0x64b0
movq -0x78(%rbp), %rax
movslq -0x14(%rbp), %rcx
shlq $0x5, %rcx
leaq 0xd0(%rax,%rcx), %rdi
leaq 0x20266(%rip), %rsi     # 0x5559e
callq 0x65c0
jmp 0x3533f
jmp 0x35341
movl -0x14(%rbp), %eax
addl $0x1, %eax
movl %eax, -0x14(%rbp)
jmp 0x3529c
movq %rax, %rcx
movl %edx, %eax
movq %rcx, -0x48(%rbp)
movl %eax, -0x4c(%rbp)
jmp 0x35372
movq %rax, %rcx
movl %edx, %eax
movq %rcx, -0x48(%rbp)
movl %eax, -0x4c(%rbp)
leaq -0x38(%rbp), %rdi
callq 0x6828
leaq -0x39(%rbp), %rdi
callq 0x64b0
jmp 0x35417
movq %rax, %rcx
movl %edx, %eax
movq %rcx, -0x48(%rbp)
movl %eax, -0x4c(%rbp)
jmp 0x35417
movq -0x78(%rbp), %rax
movl $0xffffffff, 0xc8(%rax) # imm = 0xFFFFFFFF
movl $0x0, 0x158(%rax)
movb $0x0, 0x15c(%rax)
movb $0x0, 0x15d(%rax)
movl $0xffffffff, 0x150(%rax) # imm = 0xFFFFFFFF
movl $0xffffffff, 0x154(%rax) # imm = 0xFFFFFFFF
movl $0x0, 0x160(%rax)
movl $0x0, -0x50(%rbp)
movl -0x50(%rbp), %eax
cmpl -0x10(%rbp), %eax
jge 0x3540e
movq -0x78(%rbp), %rdi
addq $0x168, %rdi            # imm = 0x168
movl $0xffffffa7, -0x54(%rbp) # imm = 0xFFFFFFA7
leaq -0x54(%rbp), %rsi
callq 0x344f0
jmp 0x35401
jmp 0x35403
movl -0x50(%rbp), %eax
addl $0x1, %eax
movl %eax, -0x50(%rbp)
jmp 0x353dc
addq $0x110, %rsp            # imm = 0x110
popq %rbp
retq
movq -0xc8(%rbp), %rdi
callq 0xbca0
movq -0xb8(%rbp), %rax
addq $0x80, %rax
movq %rax, -0xe8(%rbp)
movq -0xe8(%rbp), %rdi
addq $-0x20, %rdi
movq %rdi, -0xf0(%rbp)
callq 0x6828
movq -0xb8(%rbp), %rcx
movq -0xf0(%rbp), %rax
cmpq %rcx, %rax
movq %rax, -0xe8(%rbp)
jne 0x35437
movq -0x98(%rbp), %rax
addq $0x60, %rax
movq %rax, -0xf8(%rbp)
movq -0xf8(%rbp), %rdi
addq $-0x30, %rdi
movq %rdi, -0x100(%rbp)
callq 0x3a6f0
movq -0x98(%rbp), %rcx
movq -0x100(%rbp), %rax
cmpq %rcx, %rax
movq %rax, -0xf8(%rbp)
jne 0x3547a
movq -0x70(%rbp), %rax
addq $0x60, %rax
movq %rax, -0x108(%rbp)
movq -0x108(%rbp), %rdi
addq $-0x18, %rdi
movq %rdi, -0x110(%rbp)
callq 0x13370
movq -0x70(%rbp), %rcx
movq -0x110(%rbp), %rax
cmpq %rcx, %rax
movq %rax, -0x108(%rbp)
jne 0x354ba
jmp 0x354ea
movq -0x48(%rbp), %rdi
callq 0x6750
nopw %cs:(%rax,%rax)
nopl (%rax)