LLM4Binary/decompile-bench-makefile huggingface dataset:
// File: /workspace/github_c_makefile_star2_O3/genometools[P]genometools/src/extended/add_ids_visitor.c
// Function: gt_add_ids_visitor_class
const GtNodeVisitorClass* gt_add_ids_visitor_class()
{
  static GtNodeVisitorClass *nvc = NULL;
  if (!nvc) {
    nvc = gt_node_visitor_class_new(sizeof (GtAddIDsVisitor),
                                    add_ids_visitor_free,
                                    add_ids_visitor_comment_node,
                                    add_ids_visitor_feature_node,
                                    add_ids_visitor_region_node,
                                    add_ids_visitor_sequence_node,
                                    add_ids_visitor_eof_node);
    gt_node_visitor_class_set_meta_node_func(nvc, add_ids_visitor_meta_node);
  }
  return nvc;
}

// Assembly:
movq 0xcf539(%rip), %rax     # 0x152c28
testq %rax, %rax
je 0x836f5
retq
pushq %rax
leaq 0x473(%rip), %rax       # 0x83b70
movq %rax, (%rsp)
leaq 0x48(%rip), %rsi        # 0x83750
leaq 0x74(%rip), %rdx        # 0x83783
leaq 0xb3(%rip), %rcx        # 0x837c9
leaq 0x32f(%rip), %r8        # 0x83a4c
leaq 0x3fc(%rip), %r9        # 0x83b20
movl $0x30, %edi
callq 0x48f24
movq %rax, 0xcf4f3(%rip)     # 0x152c28
leaq 0x484(%rip), %rsi       # 0x83bc0
movq %rax, %rdi
callq 0x48f84
movq 0xcf4dd(%rip), %rax     # 0x152c28
addq $0x8, %rsp
retq
// File: /workspace/github_c_makefile_star2_O3/genometools[P]genometools/src/extended/add_ids_visitor.c
// Function: add_ids_visitor_free
static void add_ids_visitor_free(GtNodeVisitor *nv)
{
  GtAddIDsVisitor *add_ids_visitor = add_ids_visitor_cast(nv);
  gt_hashmap_delete(add_ids_visitor->undefined_sequence_regions);
  gt_cstr_table_delete(add_ids_visitor->defined_seqids);
  gt_queue_delete(add_ids_visitor->node_buffer);
}

// Assembly:
pushq %rbx
movq %rdi, %rbx
callq 0x836e8
movq %rax, %rdi
movq %rbx, %rsi
callq 0x48fc5
movq %rax, %rbx
movq 0x20(%rax), %rdi
callq 0x77bab
movq 0x18(%rbx), %rdi
callq 0x73273
movq 0x10(%rbx), %rdi
popq %rbx
jmp 0x7ca47
// File: /workspace/github_c_makefile_star2_O3/genometools[P]genometools/src/extended/add_ids_visitor.c
// Function: add_ids_visitor_comment_node
static int add_ids_visitor_comment_node(GtNodeVisitor *nv, GtCommentNode *c,
                                        GT_UNUSED GtError *err)
{
  GtAddIDsVisitor *add_ids_visitor;
  gt_error_check(err);
  add_ids_visitor = add_ids_visitor_cast(nv);
  gt_queue_add(add_ids_visitor->node_buffer, c);
  return 0;
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
movq %rsi, %rbx
movq %rdi, %r14
testq %rdx, %rdx
je 0x8379e
movq %rdx, %rdi
callq 0x34fea
testb %al, %al
jne 0x837c4
callq 0x836e8
movq %rax, %rdi
movq %r14, %rsi
callq 0x48fc5
movq 0x10(%rax), %rdi
movq %rbx, %rsi
callq 0x7c47f
xorl %eax, %eax
addq $0x8, %rsp
popq %rbx
popq %r14
retq
callq 0x1ed55
// File: /workspace/github_c_makefile_star2_O3/genometools[P]genometools/src/extended/add_ids_visitor.c
// Function: add_ids_visitor_region_node
static int add_ids_visitor_region_node(GtNodeVisitor *nv, GtRegionNode *rn,
                                       GT_UNUSED GtError *err)
{
  GtAddIDsVisitor *aiv;
  const char *seqid;
  int had_err = 0;
  gt_error_check(err);
  aiv = add_ids_visitor_cast(nv);
  seqid = gt_str_get(gt_genome_node_get_seqid((GtGenomeNode*) rn));
  if (gt_hashmap_get(aiv->undefined_sequence_regions, seqid)) {
    gt_error_set(err, "genome feature with id \"%s\" has been defined before "
                 "the corresponding \"%s\" definition on line %u in file "
                 "\"%s\"", seqid, GT_GFF_SEQUENCE_REGION,
                 gt_genome_node_get_line_number((GtGenomeNode*) rn),
                 gt_genome_node_get_filename((GtGenomeNode*) rn));
    had_err = -1;
  }
  if (!had_err) {
    if (!gt_cstr_table_get(aiv->defined_seqids, seqid))
      gt_cstr_table_add(aiv->defined_seqids, seqid);
    gt_queue_add(aiv->node_buffer, rn);
  }
  return had_err;
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r12
pushq %rbx
movq %rdx, %r14
movq %rsi, %rbx
movq %rdi, %r15
testq %rdx, %rdx
je 0x83a72
movq %r14, %rdi
callq 0x34fea
testb %al, %al
jne 0x83b1b
callq 0x836e8
movq %rax, %rdi
movq %r15, %rsi
callq 0x48fc5
movq %rax, %r12
movq %rbx, %rdi
callq 0x415a1
movq %rax, %rdi
callq 0x3bb5d
movq %rax, %r15
movq 0x20(%r12), %rdi
movq %rax, %rsi
callq 0x775ed
testq %rax, %rax
je 0x83ae4
movq %rbx, %rdi
callq 0x41592
movl %eax, %ebp
movq %rbx, %rdi
callq 0x41572
leaq 0x7038e(%rip), %rsi     # 0xf3e51
leaq 0x630da(%rip), %rcx     # 0xe6ba4
movq %r14, %rdi
movq %r15, %rdx
movl %ebp, %r8d
movq %rax, %r9
xorl %eax, %eax
callq 0x34f1f
movl $0xffffffff, %eax       # imm = 0xFFFFFFFF
jmp 0x83b12
movq 0x18(%r12), %rdi
movq %r15, %rsi
callq 0x72fc5
testq %rax, %rax
jne 0x83b03
movq 0x18(%r12), %rdi
movq %r15, %rsi
callq 0x72f66
movq 0x10(%r12), %rdi
movq %rbx, %rsi
callq 0x7c47f
xorl %eax, %eax
popq %rbx
popq %r12
popq %r14
popq %r15
popq %rbp
retq
callq 0x1edc5
// File: /workspace/github_c_makefile_star2_O3/genometools[P]genometools/src/extended/add_ids_visitor.c
// Function: add_ids_visitor_sequence_node
static int add_ids_visitor_sequence_node(GtNodeVisitor *nv, GtSequenceNode *sn,
                                         GT_UNUSED GtError *err)
{
  GtAddIDsVisitor *add_ids_visitor;
  gt_error_check(err);
  add_ids_visitor = add_ids_visitor_cast(nv);
  /* sequence nodes have to be at the end of a stream -> finalize first */
  gt_add_ids_visitor_finalize(nv);
  /* then add sequence node to buffer */
  gt_queue_add(add_ids_visitor->node_buffer, sn);
  return 0;
}

// Assembly:
pushq %r15
pushq %r14
pushq %rbx
movq %rsi, %rbx
movq %rdi, %r14
testq %rdx, %rdx
je 0x83b3c
movq %rdx, %rdi
callq 0x34fea
testb %al, %al
jne 0x83b6b
callq 0x836e8
movq %rax, %rdi
movq %r14, %rsi
callq 0x48fc5
movq %rax, %r15
movq %r14, %rdi
callq 0x83d11
movq 0x10(%r15), %rdi
movq %rbx, %rsi
callq 0x7c47f
xorl %eax, %eax
popq %rbx
popq %r14
popq %r15
retq
callq 0x1edfe
// File: /workspace/github_c_makefile_star2_O3/genometools[P]genometools/src/extended/add_ids_visitor.c
// Function: add_ids_visitor_eof_node
static int add_ids_visitor_eof_node(GtNodeVisitor *nv, GtEOFNode *eofn,
                                    GT_UNUSED GtError *err)
{
  GtAddIDsVisitor *add_ids_visitor;
  gt_error_check(err);
  add_ids_visitor = add_ids_visitor_cast(nv);
  gt_add_ids_visitor_finalize(nv);
  gt_queue_add(add_ids_visitor->node_buffer, eofn);
  return 0;
}

// Assembly:
pushq %r15
pushq %r14
pushq %rbx
movq %rsi, %rbx
movq %rdi, %r14
testq %rdx, %rdx
je 0x83b8c
movq %rdx, %rdi
callq 0x34fea
testb %al, %al
jne 0x83bbb
callq 0x836e8
movq %rax, %rdi
movq %r14, %rsi
callq 0x48fc5
movq %rax, %r15
movq %r14, %rdi
callq 0x83d11
movq 0x10(%r15), %rdi
movq %rbx, %rsi
callq 0x7c47f
xorl %eax, %eax
popq %rbx
popq %r14
popq %r15
retq
callq 0x1ee37
// File: /workspace/github_c_makefile_star2_O3/genometools[P]genometools/src/extended/add_ids_visitor.c
// Function: add_ids_visitor_meta_node
static int add_ids_visitor_meta_node(GtNodeVisitor *nv, GtMetaNode *mn,
                                     GT_UNUSED GtError *err)
{
  GtAddIDsVisitor *add_ids_visitor;
  gt_error_check(err);
  add_ids_visitor = add_ids_visitor_cast(nv);
  gt_queue_add(add_ids_visitor->node_buffer, mn);
  return 0;
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
movq %rsi, %rbx
movq %rdi, %r14
testq %rdx, %rdx
je 0x83bdb
movq %rdx, %rdi
callq 0x34fea
testb %al, %al
jne 0x83c01
callq 0x836e8
movq %rax, %rdi
movq %r14, %rsi
callq 0x48fc5
movq 0x10(%rax), %rdi
movq %rbx, %rsi
callq 0x7c47f
xorl %eax, %eax
addq $0x8, %rsp
popq %rbx
popq %r14
retq
callq 0x1ee70
// File: /workspace/github_c_makefile_star2_O3/genometools[P]genometools/src/extended/add_ids_visitor.c
// Function: gt_add_ids_visitor_new
GtNodeVisitor* gt_add_ids_visitor_new(bool ensure_sorting)
{
  GtNodeVisitor *nv = gt_node_visitor_create(gt_add_ids_visitor_class());
  GtAddIDsVisitor *add_ids_visitor = add_ids_visitor_cast(nv);
  add_ids_visitor->node_buffer = gt_queue_new();
  add_ids_visitor->defined_seqids = gt_cstr_table_new();
  add_ids_visitor->undefined_sequence_regions =
    gt_hashmap_new(GT_HASH_STRING, NULL,
                   (GtFree) automatic_sequence_region_delete);
  add_ids_visitor->ensure_sorting = ensure_sorting;
  return nv;
}

// Assembly:
pushq %r15
pushq %r14
pushq %rbx
movl %edi, %ebx
callq 0x836e8
movq %rax, %rdi
callq 0x48f94
movq %rax, %r14
callq 0x836e8
movq %rax, %rdi
movq %r14, %rsi
callq 0x48fc5
movq %rax, %r15
callq 0x7c464
movq %rax, 0x10(%r15)
callq 0x72f00
movq %rax, 0x18(%r15)
leaq 0x1d(%rip), %rdx        # 0x83c66
movl $0x1, %edi
xorl %esi, %esi
callq 0x7740c
movq %rax, 0x20(%r15)
movb %bl, 0x28(%r15)
movq %r14, %rax
popq %rbx
popq %r14
popq %r15
retq
// File: /workspace/github_c_makefile_star2_O3/genometools[P]genometools/src/extended/add_ids_visitor.c
// Function: automatic_sequence_region_delete
static void automatic_sequence_region_delete(AutomaticSequenceRegion *auto_sr)
{
  GtUword i;
  if (!auto_sr) return;
  gt_genome_node_delete(auto_sr->sequence_region);
  for (i = 0; i < gt_array_size(auto_sr->feature_nodes); i++) {
    gt_genome_node_delete(*(GtGenomeNode**)
                              gt_array_get(auto_sr->feature_nodes, i));
  }
  gt_array_delete(auto_sr->feature_nodes);
  gt_free(auto_sr);
}

// Assembly:
testq %rdi, %rdi
je 0x83cd4
pushq %r14
pushq %rbx
pushq %rax
movq %rdi, %rbx
movq (%rdi), %rdi
callq 0x4210c
movq 0x8(%rbx), %rdi
callq 0x6f310
testq %rax, %rax
je 0x83cb0
xorl %r14d, %r14d
movq 0x8(%rbx), %rdi
movq %r14, %rsi
callq 0x6f037
movq (%rax), %rdi
callq 0x4210c
incq %r14
movq 0x8(%rbx), %rdi
callq 0x6f310
cmpq %rax, %r14
jb 0x83c8b
movq 0x8(%rbx), %rdi
callq 0x6f768
leaq 0x70030(%rip), %rsi     # 0xf3cf0
movq %rbx, %rdi
movl $0x45, %edx
addq $0x8, %rsp
popq %rbx
popq %r14
jmp 0x35c27
retq
// File: /workspace/github_c_makefile_star2_O3/genometools[P]genometools/src/extended/add_ids_visitor.c
// Function: gt_add_ids_visitor_finalize
void gt_add_ids_visitor_finalize(GtNodeVisitor *nv)
{
  GT_UNUSED int had_err;
  GtAddIDsVisitor *add_ids_visitor = add_ids_visitor_cast(nv);
  had_err = gt_hashmap_foreach(add_ids_visitor->undefined_sequence_regions,
                               add_auto_sr_to_queue,
                               add_ids_visitor->node_buffer, NULL);
  gt_assert(!had_err); /* add_auto_sr_to_queue() is sane */
  gt_hashmap_reset(add_ids_visitor->undefined_sequence_regions);
}

// Assembly:
pushq %rbx
movq %rdi, %rbx
callq 0x836e8
movq %rax, %rdi
movq %rbx, %rsi
callq 0x48fc5
movq %rax, %rbx
movq 0x10(%rax), %rdx
movq 0x20(%rax), %rdi
leaq 0x1a(%rip), %rsi        # 0x83d51
xorl %ecx, %ecx
callq 0x776d9
testl %eax, %eax
jne 0x83d4c
movq 0x20(%rbx), %rdi
popq %rbx
jmp 0x7772d
callq 0x1eea9
// File: /workspace/github_c_makefile_star2_O3/genometools[P]genometools/src/extended/add_ids_visitor.c
// Function: add_auto_sr_to_queue
static int add_auto_sr_to_queue(GT_UNUSED void *key, void *value, void *data,
                                GT_UNUSED GtError *err)
{
  AutomaticSequenceRegion *auto_sr = value;
  GtQueue *genome_nodes = data;
  GtGenomeNode *gf;
  unsigned int i;
  gt_error_check(err);
  gt_assert(key && value && data);
  if (gt_array_size(auto_sr->feature_nodes)) {
    gt_queue_add(genome_nodes, auto_sr->sequence_region);
    auto_sr->sequence_region = NULL;
    for (i = 0; i < gt_array_size(auto_sr->feature_nodes); i++) {
      gf = *(GtGenomeNode**) gt_array_get(auto_sr->feature_nodes, i);
      gt_queue_add(genome_nodes, gf);
    }
    gt_array_reset(auto_sr->feature_nodes);
  }
  return 0;
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %rbx
pushq %rax
movq %rdx, %r14
movq %rsi, %rbx
movq %rdi, %r15
testq %rcx, %rcx
je 0x83d76
movq %rcx, %rdi
callq 0x34fea
testb %al, %al
jne 0x83e04
testq %r15, %r15
je 0x83dff
testq %rbx, %rbx
je 0x83dff
testq %r14, %r14
je 0x83dff
movq 0x8(%rbx), %rdi
callq 0x6f310
testq %rax, %rax
je 0x83df2
movq (%rbx), %rsi
movq %r14, %rdi
callq 0x7c47f
movq $0x0, (%rbx)
movq 0x8(%rbx), %rdi
callq 0x6f310
testq %rax, %rax
je 0x83de9
movl $0x1, %ebp
xorl %r15d, %r15d
movq 0x8(%rbx), %rdi
movq %r15, %rsi
callq 0x6f037
movq (%rax), %rsi
movq %r14, %rdi
callq 0x7c47f
movl %ebp, %r15d
movq 0x8(%rbx), %rdi
callq 0x6f310
incl %ebp
cmpq %r15, %rax
ja 0x83dbf
movq 0x8(%rbx), %rdi
callq 0x6f349
xorl %eax, %eax
addq $0x8, %rsp
popq %rbx
popq %r14
popq %r15
popq %rbp
retq
callq 0x1ef1b
callq 0x1eee2
nopl (%rax)
// File: /workspace/github_c_makefile_star2_O3/genometools[P]genometools/src/extended/cds_check_stream.c
// Function: gt_cds_check_stream_class
const GtNodeStreamClass* gt_cds_check_stream_class(void)
{
  static const GtNodeStreamClass *nsc = NULL;
  gt_class_alloc_lock_enter();
  if (!nsc) {
    nsc = gt_node_stream_class_new(sizeof (GtCDSCheckStream),
                                   cds_check_stream_free,
                                   cds_check_stream_next);
  }
  gt_class_alloc_lock_leave();
  return nsc;
}

// Assembly:
pushq %rax
callq 0x72367
cmpq $0x0, 0xcee16(%rip)     # 0x152c30
jne 0x83e3b
leaq 0x26(%rip), %rsi        # 0x83e49
leaq 0x49(%rip), %rdx        # 0x83e73
movl $0x20, %edi
callq 0x48c48
movq %rax, 0xcedf5(%rip)     # 0x152c30
callq 0x7237d
movq 0xcede9(%rip), %rax     # 0x152c30
popq %rcx
retq
// File: /workspace/github_c_makefile_star2_O3/genometools[P]genometools/src/extended/cds_check_stream.c
// Function: cds_check_stream_next
static int cds_check_stream_next(GtNodeStream *ns, GtGenomeNode **gn,
                                 GtError *err)
{
  GtCDSCheckStream *cs;
  int had_err;
  gt_error_check(err);
  cs = cds_check_stream_cast(ns);
  gt_assert(cs);
  had_err = gt_node_stream_next(cs->in_stream, gn, err);
  if (!had_err && *gn)
    had_err = gt_genome_node_accept(*gn, cs->cds_check_visitor, err);
  if (had_err) {
    /* we own the node -> delete it */
    gt_genome_node_delete(*gn);
    *gn = NULL;
  }
  return had_err;
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %rbx
pushq %rax
movq %rdx, %r14
movq %rsi, %rbx
movq %rdi, %r15
testq %rdx, %rdx
je 0x83e94
movq %r14, %rdi
callq 0x34fea
testb %al, %al
jne 0x83efe
callq 0x83e0c
movq %rax, %rdi
movq %r15, %rsi
callq 0x48f0b
testq %rax, %rax
je 0x83ef9
movq %rax, %r15
movq 0x10(%rax), %rdi
movq %rbx, %rsi
movq %r14, %rdx
callq 0x48d7c
testl %eax, %eax
je 0x83edd
movl %eax, %ebp
movq (%rbx), %rdi
callq 0x4210c
movq $0x0, (%rbx)
movl %ebp, %eax
addq $0x8, %rsp
popq %rbx
popq %r14
popq %r15
popq %rbp
retq
movq (%rbx), %rdi
xorl %ebp, %ebp
testq %rdi, %rdi
je 0x83ed0
movq 0x18(%r15), %rsi
movq %r14, %rdx
callq 0x41698
testl %eax, %eax
jne 0x83ebf
jmp 0x83ed0
callq 0x1ef8b
callq 0x1ef54
// File: /workspace/github_c_makefile_star2_O3/genometools[P]genometools/src/extended/cds_check_stream.c
// Function: gt_cds_check_stream_new
GtNodeStream* gt_cds_check_stream_new(GtNodeStream *in_stream)
{
  GtNodeStream *ns = gt_node_stream_create(gt_cds_check_stream_class(), false);
  GtCDSCheckStream *cs = cds_check_stream_cast(ns);
  cs->in_stream = gt_node_stream_ref(in_stream);
  cs->cds_check_visitor = gt_cds_check_visitor_new();
  return ns;
}

// Assembly:
pushq %r15
pushq %r14
pushq %rbx
movq %rdi, %rbx
callq 0x83e0c
movq %rax, %rdi
xorl %esi, %esi
callq 0x48c80
movq %rax, %r14
callq 0x83e0c
movq %rax, %rdi
movq %r14, %rsi
callq 0x48f0b
movq %rax, %r15
movq %rbx, %rdi
callq 0x48cec
movq %rax, 0x10(%r15)
callq 0x842fc
movq %rax, 0x18(%r15)
movq %r14, %rax
popq %rbx
popq %r14
popq %r15
retq
// File: /workspace/github_c_makefile_star2_O3/genometools[P]genometools/src/extended/cds_check_visitor.c
// Function: gt_cds_check_visitor_class
const GtNodeVisitorClass* gt_cds_check_visitor_class()
{
  static const GtNodeVisitorClass *nvc = NULL;
  gt_class_alloc_lock_enter();
  if (!nvc) {
    nvc = gt_node_visitor_class_new(sizeof (GtCDSCheckVisitor),
                                    cds_check_visitor_free,
                                    NULL,
                                    cds_check_visitor_feature_node,
                                    NULL,
                                    NULL,
                                    NULL);
  }
  gt_class_alloc_lock_leave();
  return nvc;
}

// Assembly:
pushq %rax
callq 0x72367
cmpq $0x0, 0xcecc6(%rip)     # 0x152c38
jne 0x83fa3
movq $0x0, (%rsp)
leaq 0x2e(%rip), %rsi        # 0x83fb1
leaq 0x51(%rip), %rcx        # 0x83fdb
movl $0x28, %edi
xorl %edx, %edx
xorl %r8d, %r8d
xorl %r9d, %r9d
callq 0x48f24
movq %rax, 0xcec95(%rip)     # 0x152c38
callq 0x7237d
movq 0xcec89(%rip), %rax     # 0x152c38
popq %rcx
retq
// File: /workspace/github_c_makefile_star2_O3/genometools[P]genometools/src/extended/cds_check_visitor.c
// Function: gt_cds_check_visitor_new
GtNodeVisitor* gt_cds_check_visitor_new(void)
{
  GtNodeVisitor *nv = gt_node_visitor_create(gt_cds_check_visitor_class());
  GtCDSCheckVisitor *v = cds_check_visitor_cast(nv);
  v->cds_features = gt_hashmap_new(GT_HASH_DIRECT, NULL, NULL);
  v->cds_features_to_split = gt_hashmap_new(GT_HASH_DIRECT, NULL, NULL);
  return nv;
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
callq 0x83f64
movq %rax, %rdi
callq 0x48f94
movq %rax, %rbx
callq 0x83f64
movq %rax, %rdi
movq %rbx, %rsi
callq 0x48fc5
movq %rax, %r14
xorl %edi, %edi
xorl %esi, %esi
xorl %edx, %edx
callq 0x7740c
movq %rax, 0x10(%r14)
xorl %edi, %edi
xorl %esi, %esi
xorl %edx, %edx
callq 0x7740c
movq %rax, 0x18(%r14)
movq %rbx, %rax
addq $0x8, %rsp
popq %rbx
popq %r14
retq
// File: /workspace/github_c_makefile_star2_O3/genometools[P]genometools/src/extended/cds_check_visitor.c
// Function: check_cds_phases_hm
static int check_cds_phases_hm(GT_UNUSED void *key, void *value, void *data,
                               GtError *err)
{
  GtArray *cds_features = value;
  gt_error_check(err);
  gt_assert(cds_features && data);
  return check_cds_phases(cds_features, data, true, false, err);
}

// Assembly:
pushq %r15
pushq %r14
pushq %rbx
movq %rcx, %rbx
movq %rdx, %r14
movq %rsi, %r15
testq %rcx, %rcx
je 0x8485a
movq %rbx, %rdi
callq 0x34fea
testb %al, %al
jne 0x84881
testq %r15, %r15
je 0x8487c
testq %r14, %r14
je 0x8487c
movq %r15, %rdi
movq %r14, %rsi
movl $0x1, %edx
movq %rbx, %rcx
popq %rbx
popq %r14
popq %r15
jmp 0x8452b
callq 0x1f29f
callq 0x1f266
// File: /workspace/github_c_makefile_star2_O3/genometools[P]genometools/src/extended/cds_check_visitor.c
// Function: collect_cds_feature
static int collect_cds_feature(void *key, GT_UNUSED void *value, void *data,
                               GT_UNUSED GtError *err)
{
  GtArray *cds_features = data;
  gt_error_check(err);
  gt_array_add(cds_features, key);
  return 0;
}

// Assembly:
pushq %rbx
subq $0x10, %rsp
movq %rdx, %rbx
movq %rdi, 0x8(%rsp)
testq %rcx, %rcx
je 0x848a4
movq %rcx, %rdi
callq 0x34fea
testb %al, %al
jne 0x848be
leaq 0x8(%rsp), %rsi
movl $0x8, %edx
movq %rbx, %rdi
callq 0x6f240
xorl %eax, %eax
addq $0x10, %rsp
popq %rbx
retq
callq 0x1f2d8
nop
// File: /workspace/github_c_makefile_star2_O3/genometools[P]genometools/src/extended/comment_node.c
// Function: gt_comment_node_class
const GtGenomeNodeClass* gt_comment_node_class()
{
  static const GtGenomeNodeClass *gnc = NULL;
  gt_class_alloc_lock_enter();
  if (!gnc) {
    gnc = gt_genome_node_class_new(sizeof (GtCommentNode),
                                   comment_node_free,
                                   NULL,
                                   comment_node_get_idstr,
                                   comment_node_get_range,
                                   NULL,
                                   NULL,
                                   comment_node_accept);
  }
  gt_class_alloc_lock_leave();
  return gnc;
}

// Assembly:
pushq %rax
callq 0x72367
cmpq $0x0, 0xce36e(%rip)     # 0x152c40
jne 0x8490d
leaq 0xae(%rip), %rax        # 0x84989
leaq 0x39(%rip), %rsi        # 0x8491b
leaq 0x77(%rip), %rcx        # 0x84960
leaq 0x94(%rip), %r8         # 0x84984
movl $0x40, %edi
xorl %edx, %edx
xorl %r9d, %r9d
pushq %rax
pushq $0x0
callq 0x41334
addq $0x10, %rsp
movq %rax, 0xce333(%rip)     # 0x152c40
callq 0x7237d
movq 0xce327(%rip), %rax     # 0x152c40
popq %rcx
retq
// File: /workspace/github_c_makefile_star2_O3/genometools[P]genometools/src/extended/comment_node.c
// Function: comment_node_free
static void comment_node_free(GtGenomeNode *gn)
{
  GtCommentNode *c = gt_comment_node_cast(gn);
  gt_assert(c && c->comment);
  gt_free(c->comment);
  gt_str_delete(c->comment_str);
}

// Assembly:
pushq %rbx
movq %rdi, %rbx
callq 0x848c4
movq %rax, %rdi
movq %rbx, %rsi
callq 0x4153f
testq %rax, %rax
je 0x8495b
movq %rax, %rbx
movq 0x30(%rax), %rdi
testq %rdi, %rdi
je 0x8495b
leaq 0x6f8f7(%rip), %rsi     # 0xf423e
movl $0x26, %edx
callq 0x35c27
movq 0x38(%rbx), %rdi
popq %rbx
jmp 0x3c87b
callq 0x1f311
// File: /workspace/github_c_makefile_star2_O3/genometools[P]genometools/src/extended/comment_node.c
// Function: comment_node_get_idstr
static GtStr* comment_node_get_idstr(GtGenomeNode *gn)
{
  GtCommentNode *c;
  gt_assert(gn);
  c = gt_comment_node_cast(gn);
  return c->comment_str;
}

// Assembly:
pushq %rbx
testq %rdi, %rdi
je 0x8497f
movq %rdi, %rbx
callq 0x848c4
movq %rax, %rdi
movq %rbx, %rsi
callq 0x4153f
movq 0x38(%rax), %rax
popq %rbx
retq
callq 0x1f348
// File: /workspace/github_c_makefile_star2_O3/genometools[P]genometools/src/extended/comment_node.c
// Function: comment_node_accept
static int comment_node_accept(GtGenomeNode *gn, GtNodeVisitor *nv,
                               GtError *err)
{
  GtCommentNode *c;
  gt_error_check(err);
  c = gt_comment_node_cast(gn);
  return gt_node_visitor_visit_comment_node(nv, c, err);
}

// Assembly:
pushq %r15
pushq %r14
pushq %rbx
movq %rdx, %rbx
movq %rsi, %r14
movq %rdi, %r15
testq %rdx, %rdx
je 0x849a8
movq %rbx, %rdi
callq 0x34fea
testb %al, %al
jne 0x849cb
callq 0x848c4
movq %rax, %rdi
movq %r15, %rsi
callq 0x4153f
movq %r14, %rdi
movq %rax, %rsi
movq %rbx, %rdx
popq %rbx
popq %r14
popq %r15
jmp 0x48fde
callq 0x1f37f
// File: /workspace/github_c_makefile_star2_O3/genometools[P]genometools/src/extended/comment_node.c
// Function: gt_comment_node_new
GtGenomeNode* gt_comment_node_new(const char *comment)
{
  GtGenomeNode *gn = gt_genome_node_create(gt_comment_node_class());
  GtCommentNode *c = gt_comment_node_cast(gn);
  gt_assert(comment);
  c->comment = gt_cstr_dup(comment);
  c->comment_str = gt_str_new_cstr("");
  return gn;
}

// Assembly:
pushq %r15
pushq %r14
pushq %rbx
movq %rdi, %r14
callq 0x848c4
movq %rax, %rdi
callq 0x414a6
movq %rax, %rbx
callq 0x848c4
movq %rax, %rdi
movq %rbx, %rsi
callq 0x4153f
testq %r14, %r14
je 0x84a25
movq %rax, %r15
movq %r14, %rdi
callq 0x728c0
movq %rax, 0x30(%r15)
leaq 0x6a124(%rip), %rdi     # 0xeeb37
callq 0x3b785
movq %rax, 0x38(%r15)
movq %rbx, %rax
popq %rbx
popq %r14
popq %r15
retq
callq 0x1f3b6
// File: /workspace/github_c_makefile_star2_O3/genometools[P]genometools/src/extended/eof_node.c
// Function: gt_eof_node_class
const GtGenomeNodeClass* gt_eof_node_class()
{
  static const GtGenomeNodeClass *gnc = NULL;
  gt_class_alloc_lock_enter();
  if (!gnc) {
    gnc = gt_genome_node_class_new(sizeof (GtEOFNode),
                                   eof_node_free,
                                   NULL,
                                   eof_node_get_idstr,
                                   eof_node_get_range,
                                   NULL,
                                   eof_node_change_seqid,
                                   eof_node_accept);
  }
  gt_class_alloc_lock_leave();
  return gnc;
}

// Assembly:
pushq %rax
callq 0x72367
cmpq $0x0, 0xce1ce(%rip)     # 0x152c48
jne 0x84abc
leaq 0xb1(%rip), %rax        # 0x84b34
leaq 0xa9(%rip), %r10        # 0x84b33
leaq 0x39(%rip), %rsi        # 0x84aca
leaq 0x57(%rip), %rcx        # 0x84aef
leaq 0x8f(%rip), %r8         # 0x84b2e
movl $0x38, %edi
xorl %edx, %edx
xorl %r9d, %r9d
pushq %rax
pushq %r10
callq 0x41334
addq $0x10, %rsp
movq %rax, 0xce18c(%rip)     # 0x152c48
callq 0x7237d
movq 0xce180(%rip), %rax     # 0x152c48
popq %rcx
retq
// File: /workspace/github_c_makefile_star2_O3/genometools[P]genometools/src/extended/eof_node.c
// Function: eof_node_get_idstr
static GtStr* eof_node_get_idstr(GT_UNUSED GtGenomeNode *gn)
{
  GtEOFNode *eof;
  eof = gt_eof_node_cast(gn);
  if (!eof->idstr) {
    eof->idstr = gt_str_new_cstr(gt_genome_node_get_filename(gn));
  }
  return eof->idstr;
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
movq %rdi, %r14
callq 0x84a6c
movq %rax, %rdi
movq %r14, %rsi
callq 0x4153f
movq %rax, %rbx
movq 0x30(%rax), %rax
testq %rax, %rax
jne 0x84b26
movq %r14, %rdi
callq 0x41572
movq %rax, %rdi
callq 0x3b785
movq %rax, 0x30(%rbx)
addq $0x8, %rsp
popq %rbx
popq %r14
retq
// File: /workspace/github_c_makefile_star2_O3/genometools[P]genometools/src/extended/eof_node.c
// Function: eof_node_accept
static int eof_node_accept(GtGenomeNode *gn, GtNodeVisitor *nv, GtError *err)
{
  GtEOFNode *eof;
  gt_error_check(err);
  eof = gt_eof_node_cast(gn);
  return gt_node_visitor_visit_eof_node(nv, eof, err);
}

// Assembly:
pushq %r15
pushq %r14
pushq %rbx
movq %rdx, %rbx
movq %rsi, %r14
movq %rdi, %r15
testq %rdx, %rdx
je 0x84b53
movq %rbx, %rdi
callq 0x34fea
testb %al, %al
jne 0x84b76
callq 0x84a6c
movq %rax, %rdi
movq %r15, %rsi
callq 0x4153f
movq %r14, %rdi
movq %rax, %rsi
movq %rbx, %rdx
popq %rbx
popq %r14
popq %r15
jmp 0x491aa
callq 0x1f424
// File: /workspace/github_c_makefile_star2_O3/genometools[P]genometools/src/extended/eof_node.c
// Function: gt_eof_node_new
GtGenomeNode* gt_eof_node_new(void)
{
  GtEOFNode *eof;
  GtGenomeNode *gn = gt_genome_node_create(gt_eof_node_class());
  eof = gt_eof_node_cast(gn);
  eof->idstr = NULL;
  return gn;
}

// Assembly:
pushq %rbx
callq 0x84a6c
movq %rax, %rdi
callq 0x414a6
movq %rax, %rbx
callq 0x84a6c
movq %rax, %rdi
movq %rbx, %rsi
callq 0x4153f
movq $0x0, 0x30(%rax)
movq %rbx, %rax
popq %rbx
retq
// File: /workspace/github_c_makefile_star2_O3/genometools[P]genometools/src/extended/feature_info.c
// Function: gt_feature_info_new
GtFeatureInfo* gt_feature_info_new(void)
{
  GtFeatureInfo *fi = gt_malloc(sizeof *fi);
  fi->id_to_genome_node = gt_hashmap_new(GT_HASH_STRING, gt_free_func,
                                         (GtFree) gt_genome_node_delete);
  fi->id_to_pseudo_parent = gt_hashmap_new(GT_HASH_STRING, gt_free_func,
                                           (GtFree) gt_genome_node_delete);
  return fi;
}

// Assembly:
pushq %r15
pushq %r14
pushq %rbx
leaq 0x6f71f(%rip), %rsi     # 0xf42eb
movl $0x10, %edi
movl $0x21, %edx
callq 0x35862
movq %rax, %rbx
leaq -0x4eeff(%rip), %r14    # 0x35ce6
leaq -0x42ae0(%rip), %r15    # 0x4210c
movl $0x1, %edi
movq %r14, %rsi
movq %r15, %rdx
callq 0x7740c
movq %rax, (%rbx)
movl $0x1, %edi
movq %r14, %rsi
movq %r15, %rdx
callq 0x7740c
movq %rax, 0x8(%rbx)
movq %rbx, %rax
popq %rbx
popq %r14
popq %r15
retq
// File: /workspace/github_c_makefile_star2_O3/genometools[P]genometools/src/extended/feature_info.c
// Function: gt_feature_info_delete
void gt_feature_info_delete(GtFeatureInfo *fi)
{
  if (!fi) return;
  gt_hashmap_delete(fi->id_to_genome_node);
  gt_hashmap_delete(fi->id_to_pseudo_parent);
  gt_free(fi);
}

// Assembly:
testq %rdi, %rdi
je 0x84c4b
pushq %rbx
movq %rdi, %rbx
movq (%rdi), %rdi
callq 0x77bab
movq 0x8(%rbx), %rdi
callq 0x77bab
leaq 0x6f6ae(%rip), %rsi     # 0xf42eb
movq %rbx, %rdi
movl $0x2e, %edx
popq %rbx
jmp 0x35c27
retq
// File: /workspace/github_c_makefile_star2_O3/genometools[P]genometools/src/extended/feature_info.c
// Function: gt_feature_info_add
void gt_feature_info_add(GtFeatureInfo *fi, const char *id, GtFeatureNode *fn)
{
  gt_assert(fi && id && fn);
  gt_assert(!gt_feature_node_is_pseudo((GtFeatureNode*) fn));
  gt_hashmap_add(fi->id_to_genome_node, gt_cstr_dup(id),
                 gt_genome_node_ref((GtGenomeNode*) fn));
}

// Assembly:
pushq %r15
pushq %r14
pushq %rbx
testq %rdi, %rdi
je 0x84cd6
movq %rsi, %r14
testq %rsi, %rsi
je 0x84cd6
movq %rdx, %rbx
testq %rdx, %rdx
je 0x84cd6
movq %rdi, %r15
movq %rbx, %rdi
callq 0x3faf4
testb %al, %al
jne 0x84cdb
movq (%r15), %r15
movq %r14, %rdi
callq 0x728c0
movq %rax, %r14
movq %rbx, %rdi
callq 0x4130c
movq %r15, %rdi
movq %r14, %rsi
movq %rax, %rdx
popq %rbx
popq %r14
popq %r15
jmp 0x77628
callq 0x1f4c9
callq 0x1f500
// File: /workspace/github_c_makefile_star2_O3/genometools[P]genometools/src/extended/feature_info.c
// Function: gt_feature_info_add_pseudo_parent
void gt_feature_info_add_pseudo_parent(GtFeatureInfo *fi, const char *id,
                                       GtFeatureNode *pseudo_parent)
{
  gt_assert(fi && id && pseudo_parent);
  gt_assert(gt_feature_node_is_pseudo((GtFeatureNode*) pseudo_parent));
  gt_hashmap_add(fi->id_to_pseudo_parent, gt_cstr_dup(id),
                 gt_genome_node_ref((GtGenomeNode*) pseudo_parent));
}

// Assembly:
pushq %r15
pushq %r14
pushq %rbx
testq %rdi, %rdi
je 0x84d4c
movq %rsi, %r14
testq %rsi, %rsi
je 0x84d4c
movq %rdx, %rbx
testq %rdx, %rdx
je 0x84d4c
movq %rdi, %r15
movq %rbx, %rdi
callq 0x3faf4
testb %al, %al
je 0x84d51
movq 0x8(%r15), %r15
movq %r14, %rdi
callq 0x728c0
movq %rax, %r14
movq %rbx, %rdi
callq 0x4130c
movq %r15, %rdi
movq %r14, %rsi
movq %rax, %rdx
popq %rbx
popq %r14
popq %r15
jmp 0x77628
callq 0x1f56e
callq 0x1f5a5
// File: /workspace/github_c_makefile_star2_O3/genometools[P]genometools/src/extended/feature_info.c
// Function: gt_feature_info_replace_pseudo_parent
void gt_feature_info_replace_pseudo_parent(GtFeatureInfo *fi,
                                           GtFeatureNode *child,
                                           GtFeatureNode *new_pseudo_parent)
{
  const char *id;
  gt_assert(fi && child && new_pseudo_parent);
  gt_assert(gt_feature_node_is_pseudo((GtFeatureNode*) new_pseudo_parent));
  id = gt_feature_node_get_attribute(child, GT_GFF_ID);
  gt_assert(id);
  gt_hashmap_remove(fi->id_to_pseudo_parent, id);
  gt_feature_info_add_pseudo_parent(fi, id, new_pseudo_parent);
}

// Assembly:
pushq %r15
pushq %r14
pushq %rbx
testq %rdi, %rdi
je 0x84db5
movq %rsi, %r15
testq %rsi, %rsi
je 0x84db5
movq %rdx, %rbx
testq %rdx, %rdx
je 0x84db5
movq %rdi, %r14
movq %rbx, %rdi
callq 0x3faf4
testb %al, %al
je 0x84dba
leaq 0x6299d(%rip), %rsi     # 0xe7723
movq %r15, %rdi
callq 0x3eedc
testq %rax, %rax
je 0x84dbf
movq %rax, %r15
movq 0x8(%r14), %rdi
movq %rax, %rsi
callq 0x77666
movq %r14, %rdi
movq %r15, %rsi
movq %rbx, %rdx
popq %rbx
popq %r14
popq %r15
jmp 0x84cf9
callq 0x1f5dc
callq 0x1f613
callq 0x1f64a
// File: /workspace/github_c_makefile_star2_O3/genometools[P]genometools/src/extended/gff3_escaping.c
// Function: gt_gff3_escape
void gt_gff3_escape(GtStr *escaped_seq, const char *unescaped_seq,
                    GtUword length)
{
  const char *cc;
  gt_assert(escaped_seq && unescaped_seq);
  for (cc = unescaped_seq; cc < unescaped_seq + length; cc++) {
    switch (*cc) {
      case ';':  gt_str_append_cstr(escaped_seq, SEMICOLON); break;
      case '=':  gt_str_append_cstr(escaped_seq, EQUALS); break;
      case '%':  gt_str_append_cstr(escaped_seq, PERCENT); break;
      case '&':  gt_str_append_cstr(escaped_seq, AND); break;
      case ',':  gt_str_append_cstr(escaped_seq, COMMA); break;
      default:
        if ((*cc > 0 && *cc < 0x20) || *cc == 0x7F) {
          gt_gff3_escape_controlchar2hex(escaped_seq, *cc);
        } else gt_str_append_char(escaped_seq, *cc);
    }
  }
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
pushq %rax
testq %rdi, %rdi
je 0x85339
movq %rsi, %r14
testq %rsi, %rsi
je 0x85339
movq %rdx, %rbx
testq %rdx, %rdx
jle 0x8532a
movq %rdi, %r15
addq %r14, %rbx
leaq 0x6f4b5(%rip), %r12     # 0xf471e
leaq 0x6f4a2(%rip), %r13     # 0xf4712
movzbl (%r14), %ebp
cmpl $0x2b, %ebp
jle 0x85294
cmpl $0x2c, %ebp
je 0x852aa
cmpl $0x3d, %ebp
je 0x852b2
cmpl $0x3b, %ebp
jne 0x852d3
movq %r15, %rdi
leaq 0x6f47c(%rip), %rsi     # 0xf470e
jmp 0x852c4
cmpl $0x25, %ebp
je 0x852ba
cmpl $0x26, %ebp
jne 0x852d3
movq %r15, %rdi
leaq 0x6f472(%rip), %rsi     # 0xf471a
jmp 0x852c4
movq %r15, %rdi
movq %r12, %rsi
jmp 0x852c4
movq %r15, %rdi
movq %r13, %rsi
jmp 0x852c4
movq %r15, %rdi
leaq 0x6f452(%rip), %rsi     # 0xf4716
callq 0x3b7af
incq %r14
cmpq %rbx, %r14
jb 0x85270
jmp 0x8532a
movl %ebp, %eax
decb %al
cmpb $0x1f, %al
setae %al
cmpl $0x7f, %ebp
setne %cl
testb %al, %cl
jne 0x8531c
movq %r15, %rdi
movl $0x25, %esi
callq 0x3b9df
movl %ebp, %eax
shrl $0x4, %eax
leaq 0x6f5a1(%rip), %rcx     # 0xf48a0
movsbl (%rax,%rcx), %esi
movq %r15, %rdi
callq 0x3b9df
andl $0xf, %ebp
leaq 0x6f58b(%rip), %rax     # 0xf48a0
movsbl (%rbp,%rax), %esi
jmp 0x85320
movsbl %bpl, %esi
movq %r15, %rdi
callq 0x3b9df
jmp 0x852c9
addq $0x8, %rsp
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
retq
callq 0x1f8b1
// File: /workspace/github_c_makefile_star2_O3/genometools[P]genometools/src/extended/gff3_escaping.c
// Function: gt_gff3_unescape
int gt_gff3_unescape(GtStr *unescaped_seq, const char *escaped_seq,
                     GtUword length, GtError *err)
{
  const char *cc;
  int had_err = 0;
  gt_error_check(err);
  gt_assert(unescaped_seq && escaped_seq);
  for (cc = escaped_seq; !had_err && cc < escaped_seq + length; cc++) {
    if (*cc == '%') {
      if (cc + 2 >= escaped_seq + length) {
        gt_error_set(err, "not enough sequence left to unescape after '%%'");
        had_err = -1;
      } else {
        char x = GT_UNDEF_CHAR;
        int ret = gt_gff3_escape_hex2prnchar(cc, &x);
        if (ret == 0 && x != GT_UNDEF_CHAR) {
          gt_str_append_char(unescaped_seq, x);
          cc += 2;
        } else gt_str_append_char(unescaped_seq, *cc);
      }
    } else gt_str_append_char(unescaped_seq, *cc);
  }
  return had_err;
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
pushq %rax
movq %rcx, %rbx
movq %rdx, %r14
movq %rsi, %rbp
movq %rdi, %r15
testq %rcx, %rcx
je 0x8536a
movq %rbx, %rdi
callq 0x34fea
testb %al, %al
jne 0x85426
testq %r15, %r15
je 0x85421
testq %rbp, %rbp
je 0x85421
xorl %eax, %eax
testq %r14, %r14
jle 0x85412
addq %rbp, %r14
leaq 0x6f59f(%rip), %r13     # 0xf4930
movb (%rbp), %al
cmpb $0x25, %al
jne 0x853df
leaq 0x2(%rbp), %r12
cmpq %r14, %r12
jae 0x853fc
movsbq 0x1(%rbp), %rax
testb $0x2, (%rax,%r13)
je 0x853dd
movsbq (%r12), %rcx
testb $0x1, (%rcx,%r13)
je 0x853dd
movl %eax, %edx
xorb $0x37, %dl
movl %ecx, %esi
xorb $0x46, %sil
orb %dl, %sil
je 0x853dd
leaq 0x6f4f0(%rip), %rdx     # 0xf48c0
movb (%rax,%rdx), %al
shlb $0x4, %al
orb (%rcx,%rdx), %al
cmpb $0x7f, %al
jne 0x853e2
movb $0x25, %al
movq %rbp, %r12
movsbl %al, %esi
movq %r15, %rdi
callq 0x3b9df
incq %r12
movq %r12, %rbp
cmpq %r14, %r12
jb 0x85391
xorl %eax, %eax
jmp 0x85412
leaq 0x6f34d(%rip), %rsi     # 0xf4750
movq %rbx, %rdi
xorl %eax, %eax
callq 0x34f1f
movl $0xffffffff, %eax       # imm = 0xFFFFFFFF
addq $0x8, %rsp
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
retq
callq 0x1f91f
callq 0x1f8e8
// File: /workspace/github_c_makefile_star2_O3/genometools[P]genometools/src/extended/gff3_escaping.c
// Function: test_single_escaping
static int test_single_escaping(char unescaped_char, const char *escaped_char,
                                bool expect_escape, bool expect_unescape,
                                GtError *err)
{
  GtStr *escaped_seq, *unescaped_seq;
  char unescaped_testseq[8],
       escaped_testseq[10];
  int had_err = 0;
  gt_error_check(err);
  escaped_seq = gt_str_new();
  unescaped_seq = gt_str_new();
  snprintf(unescaped_testseq, sizeof unescaped_testseq, "foo%cbar",
           unescaped_char);
  snprintf(escaped_testseq, sizeof escaped_testseq, "foo%sbar", escaped_char);
  if (expect_escape) {
    gt_gff3_escape(escaped_seq, unescaped_testseq, strlen(unescaped_testseq));
    gt_ensure(!strcmp(gt_str_get(escaped_seq), escaped_testseq));
  } else {
    gt_str_append_cstr(escaped_seq, escaped_testseq);
  }
  if (!had_err && expect_unescape) {
    had_err = gt_gff3_unescape(unescaped_seq, gt_str_get(escaped_seq),
                               gt_str_length(escaped_seq), err);
    gt_ensure(!strcmp(gt_str_get(unescaped_seq), unescaped_testseq));
  }
  gt_str_delete(unescaped_seq);
  gt_str_delete(escaped_seq);
  return had_err;
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
subq $0x18, %rsp
movq %r8, %r15
movl %ecx, (%rsp)
movl %edx, %r12d
movq %rsi, %r13
movl %edi, %r14d
testq %r8, %r8
je 0x8574c
movq %r15, %rdi
callq 0x34fea
testb %al, %al
jne 0x8589e
callq 0x3b728
movq %rax, %rbx
callq 0x3b728
movq %rax, %rbp
movsbl %r14b, %ecx
leaq 0x6f0b2(%rip), %rdx     # 0xf4819
leaq 0x6(%rsp), %rdi
movl $0x8, %esi
xorl %eax, %eax
callq 0xba10
leaq 0x6f0a3(%rip), %rdx     # 0xf4822
leaq 0xe(%rsp), %rdi
movl $0xa, %esi
movq %r13, %rcx
xorl %eax, %eax
callq 0xba10
testb %r12b, %r12b
je 0x857f3
leaq 0x6(%rsp), %r14
movq %r14, %rdi
callq 0xb260
movq %rbx, %rdi
movq %r14, %rsi
movq %rax, %rdx
callq 0x85230
movq %rbx, %rdi
callq 0x3bb5d
leaq 0xe(%rsp), %rsi
movq %rax, %rdi
callq 0xb890
testl %eax, %eax
je 0x85800
leaq 0x5d986(%rip), %rsi     # 0xe3159
leaq 0x6f051(%rip), %rdx     # 0xf482b
leaq 0x6f023(%rip), %rcx     # 0xf4804
leaq 0x6ef09(%rip), %r8      # 0xf46f1
movq %r15, %rdi
movl $0x93, %r9d
jmp 0x8586f
leaq 0xe(%rsp), %rsi
movq %rbx, %rdi
callq 0x3b7af
xorl %r12d, %r12d
cmpb $0x0, (%rsp)
je 0x8587c
movq %rbx, %rdi
callq 0x3bb5d
movq %rax, %r14
movq %rbx, %rdi
callq 0x3bb86
movq %rbp, %rdi
movq %r14, %rsi
movq %rax, %rdx
movq %r15, %rcx
callq 0x8533e
testl %eax, %eax
jne 0x85876
movq %rbp, %rdi
callq 0x3bb5d
leaq 0x6(%rsp), %rsi
movq %rax, %rdi
callq 0xb890
testl %eax, %eax
je 0x8587c
leaq 0x5d908(%rip), %rsi     # 0xe3159
leaq 0x6f005(%rip), %rdx     # 0xf485d
leaq 0x6efa5(%rip), %rcx     # 0xf4804
leaq 0x6ee8b(%rip), %r8      # 0xf46f1
movq %r15, %rdi
movl $0x9a, %r9d
xorl %eax, %eax
callq 0x34f1f
movl $0xffffffff, %r12d      # imm = 0xFFFFFFFF
movq %rbp, %rdi
callq 0x3c87b
movq %rbx, %rdi
callq 0x3c87b
movl %r12d, %eax
addq $0x18, %rsp
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
retq
callq 0x1f98f
nop
// File: /workspace/github_c_makefile_star2_O3/genometools[P]genometools/src/extended/gff3_output.c
// Function: gt_gff3_output_leading
void gt_gff3_output_leading(GtFeatureNode *fn, GtFile *outfp)
{
  GtGenomeNode *gn;
  gt_assert(fn);
  gn = (GtGenomeNode*) fn;
  gt_file_xprintf(outfp, "%s\t%s\t%s\t"GT_WU"\t"GT_WU"\t",
                     gt_str_get(gt_genome_node_get_seqid(gn)),
                     gt_feature_node_get_source(fn),
                     gt_feature_node_get_type(fn),
                     gt_genome_node_get_start(gn),
                     gt_genome_node_get_end(gn));
  if (gt_feature_node_score_is_defined(fn))
    gt_file_xprintf(outfp, "%.3g", gt_feature_node_get_score(fn));
  else
    gt_file_xfputc('.', outfp);
  gt_file_xprintf(outfp, "\t%c\t%c\t",
                     GT_STRAND_CHARS[gt_feature_node_get_strand(fn)],
                     GT_PHASE_CHARS[gt_feature_node_get_phase(fn)]);
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
pushq %rax
testq %rdi, %rdi
je 0x8599b
movq %rsi, %rbx
movq %rdi, %r14
callq 0x415a1
movq %rax, %rdi
callq 0x3bb5d
movq %rax, %r15
movq %r14, %rdi
callq 0x3fa40
movq %rax, %r12
movq %r14, %rdi
callq 0x3f914
movq %rax, %r13
movq %r14, %rdi
callq 0x415e0
movq %rax, %rbp
movq %r14, %rdi
callq 0x41603
movq %rax, (%rsp)
leaq 0x6f0e0(%rip), %rsi     # 0xf49e2
movq %rbx, %rdi
movq %r15, %rdx
movq %r12, %rcx
movq %r13, %r8
movq %rbp, %r9
xorl %eax, %eax
callq 0x75ce5
movq %r14, %rdi
callq 0x3f954
testb %al, %al
je 0x85943
movq %r14, %rdi
callq 0x3fc4f
cvtss2sd %xmm0, %xmm0
leaq 0x6f0bd(%rip), %rsi     # 0xf49f4
movq %rbx, %rdi
movb $0x1, %al
callq 0x75ce5
jmp 0x85950
movl $0x2e, %edi
movq %rbx, %rsi
callq 0x75f43
movq %r14, %rdi
callq 0x3f462
movl %eax, %eax
leaq 0x5d1e3(%rip), %rcx     # 0xe2b44
movsbl (%rax,%rcx), %ebp
movq %r14, %rdi
callq 0x3fcc6
movl %eax, %eax
leaq 0x5d27a(%rip), %rcx     # 0xe2bf0
movsbl (%rax,%rcx), %ecx
leaq 0x6f078(%rip), %rsi     # 0xf49f9
movq %rbx, %rdi
movl %ebp, %edx
xorl %eax, %eax
addq $0x8, %rsp
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
jmp 0x75ce5
callq 0x1f9c8
// File: /workspace/github_c_makefile_star2_O3/genometools[P]genometools/src/extended/gff3_output.c
// Function: gt_gff3_output_leading_str
void gt_gff3_output_leading_str(GtFeatureNode *fn, GtStr *outstr)
{
  GtGenomeNode *gn;
  gt_assert(fn && outstr);
  gn = (GtGenomeNode*) fn;
  gt_str_append_str(outstr, gt_genome_node_get_seqid(gn));
  gt_str_append_char(outstr, '\t');
  gt_str_append_cstr(outstr, gt_feature_node_get_source(fn));
  gt_str_append_char(outstr, '\t');
  gt_str_append_cstr(outstr, gt_feature_node_get_type(fn));
  gt_str_append_char(outstr, '\t');
  gt_str_append_uword(outstr, gt_genome_node_get_start(gn));
  gt_str_append_char(outstr, '\t');
  gt_str_append_uword(outstr, gt_genome_node_get_end(gn));
  gt_str_append_char(outstr, '\t');
  if (gt_feature_node_score_is_defined(fn)) {
    char buf[BUFSIZ];
    (void) snprintf(buf, BUFSIZ, "%.3g", gt_feature_node_get_score(fn));
    gt_str_append_cstr(outstr, buf);
  } else
    gt_str_append_char(outstr, '.');
  gt_str_append_char(outstr, '\t');
  gt_str_append_char(outstr, GT_STRAND_CHARS[gt_feature_node_get_strand(fn)]);
  gt_str_append_char(outstr, '\t');
  gt_str_append_char(outstr, GT_PHASE_CHARS[gt_feature_node_get_phase(fn)]);
  gt_str_append_char(outstr, '\t');
}

// Assembly:
pushq %r15
pushq %r14
pushq %rbx
subq $0x2000, %rsp           # imm = 0x2000
testq %rdi, %rdi
je 0x85b1a
movq %rsi, %rbx
testq %rsi, %rsi
je 0x85b1a
movq %rdi, %r14
callq 0x415a1
movq %rbx, %rdi
movq %rax, %rsi
callq 0x3b87d
movq %rbx, %rdi
movl $0x9, %esi
callq 0x3b9df
movq %r14, %rdi
callq 0x3fa40
movq %rbx, %rdi
movq %rax, %rsi
callq 0x3b7af
movq %rbx, %rdi
movl $0x9, %esi
callq 0x3b9df
movq %r14, %rdi
callq 0x3f914
movq %rbx, %rdi
movq %rax, %rsi
callq 0x3b7af
movq %rbx, %rdi
movl $0x9, %esi
callq 0x3b9df
movq %r14, %rdi
callq 0x415e0
movq %rbx, %rdi
movq %rax, %rsi
callq 0x3b92e
movq %rbx, %rdi
movl $0x9, %esi
callq 0x3b9df
movq %r14, %rdi
callq 0x41603
movq %rbx, %rdi
movq %rax, %rsi
callq 0x3b92e
movq %rbx, %rdi
movl $0x9, %esi
callq 0x3b9df
movq %r14, %rdi
callq 0x3f954
testb %al, %al
je 0x85a9f
movq %r14, %rdi
callq 0x3fc4f
cvtss2sd %xmm0, %xmm0
leaq 0x6ef74(%rip), %rdx     # 0xf49f4
movq %rsp, %r15
movl $0x2000, %esi           # imm = 0x2000
movq %r15, %rdi
movb $0x1, %al
callq 0xba10
movq %rbx, %rdi
movq %r15, %rsi
callq 0x3b7af
jmp 0x85aac
movq %rbx, %rdi
movl $0x2e, %esi
callq 0x3b9df
movq %rbx, %rdi
movl $0x9, %esi
callq 0x3b9df
movq %r14, %rdi
callq 0x3f462
movl %eax, %eax
leaq 0x5d07a(%rip), %rcx     # 0xe2b44
movsbl (%rax,%rcx), %esi
movq %rbx, %rdi
callq 0x3b9df
movq %rbx, %rdi
movl $0x9, %esi
callq 0x3b9df
movq %r14, %rdi
callq 0x3fcc6
movl %eax, %eax
leaq 0x5d0fc(%rip), %rcx     # 0xe2bf0
movsbl (%rax,%rcx), %esi
movq %rbx, %rdi
callq 0x3b9df
movq %rbx, %rdi
movl $0x9, %esi
callq 0x3b9df
addq $0x2000, %rsp           # imm = 0x2000
popq %rbx
popq %r14
popq %r15
retq
callq 0x1f9ff
nop
// File: /workspace/github_c_makefile_star2_O3/genometools[P]genometools/src/extended/luaserialize.c
// Function: gt_lua_table_to_str
int gt_lua_table_to_str(lua_State *L, GtStr *out, int index, GtError *err)
{
  int had_err;
#ifndef NDEBUG
  int stack_size = lua_gettop(L);
#endif
  gt_error_check(err);
  gt_assert(L && out && lua_istable(L, index));
  had_err = parse_table(L, out, index, 1, err);
  gt_assert(lua_gettop(L) == stack_size); /* make sure the stack doesn't grow */
  return had_err;
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r12
pushq %rbx
movq %rcx, %r14
movl %edx, %r15d
movq %rsi, %r12
movq %rdi, %rbx
callq 0x56afc
movl %eax, %ebp
testq %r14, %r14
je 0x85b4c
movq %r14, %rdi
callq 0x34fea
testb %al, %al
jne 0x85ba1
testq %rbx, %rbx
je 0x85b97
testq %r12, %r12
je 0x85b97
movq %rbx, %rdi
movl %r15d, %esi
callq 0x56f9b
cmpl $0x5, %eax
jne 0x85b97
movq %rbx, %rdi
movq %r12, %rsi
movl %r15d, %edx
movl $0x1, %ecx
movq %r14, %r8
callq 0x85ba6
movl %eax, %r14d
movq %rbx, %rdi
callq 0x56afc
cmpl %ebp, %eax
jne 0x85b9c
movl %r14d, %eax
popq %rbx
popq %r12
popq %r14
popq %r15
popq %rbp
retq
callq 0x1fa6d
callq 0x1faa4
callq 0x1fa36
// File: /workspace/github_c_makefile_star2_O3/genometools[P]genometools/src/extended/luaserialize.c
// Function: parse_table
static int parse_table(lua_State *L, GtStr *out, int index, int level,
                       GtError *err)
{
  int GT_UNUSED rval, had_err = 0;
  gt_error_check(err);
  gt_assert(lua_istable(L, index));
  lua_pushnil(L);
  if (index < 0)
    index--;
  while (!had_err && (lua_next(L, index) != 0))
  {
    int i;
    for (i=0;i<level;i++)
      gt_str_append_cstr(out, "  ");
    rval = format_scalar(L, out, -2, true, NULL);
    gt_assert(!rval); /* cannot happen */
    gt_str_append_cstr(out, " = ");
    if (lua_istable(L, -1))
    {
      gt_str_append_cstr(out, "{\n");
      had_err = parse_table(L, out, -1, level+1, err);
      for (i=0;i<level;i++)
        gt_str_append_cstr(out, "  ");
      gt_str_append_cstr(out, "},\n");
    }
    else
    {
      had_err = format_scalar(L, out, -1, false, err);
      gt_str_append_cstr(out, ",\n");
    }
    lua_pop(L, 1);
  }
  return had_err;
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
subq $0x18, %rsp
movq %r8, %rbp
movl %ecx, %r14d
movl %edx, %ebx
movq %rsi, %r15
movq %rdi, %r12
testq %r8, %r8
je 0x85bd7
movq %rbp, %rdi
callq 0x34fea
testb %al, %al
jne 0x85d35
movq %r12, %rdi
movl %ebx, %esi
callq 0x56f9b
cmpl $0x5, %eax
jne 0x85d30
movq %r12, %rdi
callq 0x57704
movl %ebx, %eax
sarl $0x1f, %eax
addl %ebx, %eax
movl %eax, 0xc(%rsp)
leal 0x1(%r14), %eax
movl %eax, 0x8(%rsp)
leaq 0x78b73(%rip), %r13     # 0xfe77f
movq %r14, 0x10(%rsp)
movq %r12, %rdi
movl 0xc(%rsp), %esi
callq 0x58df3
testl %eax, %eax
je 0x85d18
testl %r14d, %r14d
jle 0x85c3c
movl %r14d, %ebx
movq %r15, %rdi
movq %r13, %rsi
callq 0x3b7af
decl %ebx
jne 0x85c2d
movq %r12, %rdi
movq %r15, %rsi
movl $0xfffffffe, %edx       # imm = 0xFFFFFFFE
movl $0x1, %ecx
xorl %r8d, %r8d
callq 0x863ee
testl %eax, %eax
jne 0x85d2b
movq %r15, %rdi
leaq 0x6ef6c(%rip), %rsi     # 0xf4bd2
callq 0x3b7af
movq %r12, %rdi
movl $0xffffffff, %esi       # imm = 0xFFFFFFFF
callq 0x56f9b
cmpl $0x5, %eax
jne 0x85cd2
movq %r15, %rdi
leaq 0x6656c(%rip), %rsi     # 0xec1f3
callq 0x3b7af
movq %r12, %rdi
movq %r15, %rsi
movl $0xffffffff, %edx       # imm = 0xFFFFFFFF
movl 0x8(%rsp), %ecx
movq %rbp, %r8
callq 0x85ba6
movl %eax, %ebx
testl %r14d, %r14d
jle 0x85cf2
movq %r14, %rax
movq %rbp, %r14
movl %eax, %ebp
movq %r15, %rdi
movq %r13, %rsi
callq 0x3b7af
decl %ebp
jne 0x85cb2
leaq 0x6ef0e(%rip), %rsi     # 0xf4bd6
movq %r14, %rbp
movq 0x10(%rsp), %r14
jmp 0x85cf9
movq %r12, %rdi
movq %r15, %rsi
movl $0xffffffff, %edx       # imm = 0xFFFFFFFF
xorl %ecx, %ecx
movq %rbp, %r8
callq 0x863ee
movl %eax, %ebx
leaq 0x6eee7(%rip), %rsi     # 0xf4bd7
jmp 0x85cf9
leaq 0x6eedd(%rip), %rsi     # 0xf4bd6
movq %r15, %rdi
callq 0x3b7af
movq %r12, %rdi
movl $0xfffffffe, %esi       # imm = 0xFFFFFFFE
callq 0x56b09
testl %ebx, %ebx
je 0x85c11
jmp 0x85d1a
xorl %ebx, %ebx
movl %ebx, %eax
addq $0x18, %rsp
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
retq
callq 0x1fb49
callq 0x1fb12
callq 0x1fadb
// File: /workspace/github_c_makefile_star2_O3/genometools[P]genometools/src/extended/xrf_abbr_entry.c
// Function: gt_xrf_abbr_entry_new
GtXRFAbbrEntry* gt_xrf_abbr_entry_new(GtUword line,
                                      GtStr *filename)
{
  GtXRFAbbrEntry *abbr_entry = gt_malloc(sizeof *abbr_entry);
  abbr_entry->content = gt_hashmap_new(GT_HASH_STRING, gt_free_func,
                                       (GtFree) gt_str_delete);
  abbr_entry->line = line;
  abbr_entry->filename = gt_str_ref(filename);
  return abbr_entry;
}

// Assembly:
pushq %r15
pushq %r14
pushq %rbx
movq %rsi, %rbx
movq %rdi, %r14
leaq 0x6e8e5(%rip), %rsi     # 0xf4ea7
movl $0x18, %edi
movl $0x21, %edx
callq 0x35862
movq %rax, %r15
leaq -0x508f5(%rip), %rsi    # 0x35ce6
leaq -0x49d67(%rip), %rdx    # 0x3c87b
movl $0x1, %edi
callq 0x7740c
movq %rax, (%r15)
movq %r14, 0x8(%r15)
movq %rbx, %rdi
callq 0x3bcaf
movq %rax, 0x10(%r15)
movq %r15, %rax
popq %rbx
popq %r14
popq %r15
retq
// File: /workspace/github_c_makefile_star2_O3/genometools[P]genometools/src/extended/xrf_abbr_entry.c
// Function: gt_xrf_abbr_entry_delete
void gt_xrf_abbr_entry_delete(GtXRFAbbrEntry *abbr_entry)
{
  if (!abbr_entry) return;
  gt_str_delete(abbr_entry->filename);
  gt_hashmap_delete(abbr_entry->content);
  gt_free(abbr_entry);
}

// Assembly:
testq %rdi, %rdi
je 0x86637
pushq %rbx
movq %rdi, %rbx
movq 0x10(%rdi), %rdi
callq 0x3c87b
movq (%rbx), %rdi
callq 0x77bab
leaq 0x6e87e(%rip), %rsi     # 0xf4ea7
movq %rbx, %rdi
movl $0x2e, %edx
popq %rbx
jmp 0x35c27
retq