// File: /workspace/github_c_makefile_star2_O0/genometools[P]genometools/src/tools/gt_readjoiner_overlap.c
// Function: gt_readjoiner_overlap_option_parser_new
static GtOptionParser* gt_readjoiner_overlap_option_parser_new(
    void *tool_arguments)
{
  GtReadjoinerOverlapArguments *arguments = tool_arguments;
  GtOptionParser *op;
  GtOption *option, *optionparts, *optionmemlimit, *q_option, *v_option;

  gt_assert(arguments);

  /* init */
  op = gt_option_parser_new("[option ...] [file]",
                            "Compute suffix prefix matches "
                            "from encoded sequence.");

  /* -readset */
  option = gt_option_new_string("readset", "specify the readset name",
                                arguments->encseqinput, NULL);
  gt_option_parser_add_option(op, option);
  gt_option_is_mandatory(option);

  /* -l */
  option = gt_option_new_uint_min("l", "specify the minimum SPM length",
                                  &arguments->minmatchlength, 0, 2U);
  gt_option_parser_add_option(op, option);
  gt_option_is_mandatory(option);

  /* -parts */
  optionparts = gt_option_new_uint("parts", "specify the number of parts",
                                  &arguments->numofparts, 0U);
  gt_option_parser_add_option(op, optionparts);

  /* -memlimit */
  optionmemlimit = gt_option_new_string("memlimit",
                       "specify maximal amount of memory to be used during "
                       "index construction (in bytes, the keywords 'MB' "
                       "and 'GB' are allowed)",
                       arguments->memlimitarg, NULL);
  gt_option_parser_add_option(op, optionmemlimit);
  gt_option_exclude(optionmemlimit, optionparts);
  arguments->refoptionmemlimit = gt_option_ref(optionmemlimit);

  /* -singlestrand */
  option = gt_option_new_bool("singlestrand", "do not use reverse complements "
      "of the reads", &arguments->singlestrand, false);
  gt_option_is_development_option(option);
  gt_option_parser_add_option(op, option);

  /* -elimtrans */
  option = gt_option_new_bool("elimtrans", "output only irreducible SPMs",
      &arguments->elimtrans, true);
  gt_option_is_development_option(option);
  gt_option_parser_add_option(op, option);

  /* -wmax */
  option = gt_option_new_uint("wmax", "specify the maximum width of w set;\n"
                              "use 0 to disable w set partitioning",
                              &arguments->w_maxsize, 32U);
  gt_option_is_development_option(option);
  gt_option_parser_add_option(op, option);

  /* -showspm */
  option = gt_option_new_bool("showspm", "show textual SPMs list on stdout",
      &arguments->showspm, false);
  gt_option_is_development_option(option);
  gt_option_parser_add_option(op, option);

  /* -phase2extra */
  option = gt_option_new_string("phase2extra",
                       "specify amount of additional space required for "
                       "the second phase of the computation involving the "
                       "processing of the intervals (in bytes, "
                       "the keywords 'MB' and 'GB' are allowed)",
                       arguments->phase2extraarg, NULL);
  gt_option_parser_add_option(op, option);
  arguments->refoptionphase2extra = gt_option_ref(option);
  gt_option_is_development_option(option);

  /* -v */
  v_option = gt_option_new_verbose(&arguments->verbose);
  gt_option_parser_add_option(op, v_option);

  /* -q */
  q_option = gt_option_new_bool("q", "suppress standard output messages",
                             &arguments->quiet, false);
  gt_option_parser_add_option(op, q_option);
  gt_option_exclude(q_option, v_option);

  /* -radixparts */
  option = gt_option_new_uint("radixparts", "specify the radixpart parameter",
      &arguments->radixparts, 1U);
  gt_option_is_development_option(option);
  gt_option_parser_add_option(op, option);

  /* -radixsmall */
  option = gt_option_new_bool("radixsmall", "specify the radixsmall parameter",
      &arguments->radixsmall, false);
  gt_option_is_development_option(option);
  gt_option_parser_add_option(op, option);

  /* -onlyallfirstcodes */
  option = gt_option_new_bool("onlyallfirstcodes", "only determines allcodes",
                              &arguments->onlyallfirstcodes, false);
  gt_option_is_development_option(option);
  gt_option_parser_add_option(op, option);

  gt_option_parser_set_version_func(op, gt_readjoiner_show_version);
  return op;
}

// Assembly:
subq $0x48, %rsp
movq %rdi, 0x40(%rsp)
movq 0x40(%rsp), %rax
movq %rax, 0x38(%rsp)
cmpq $0x0, 0x38(%rsp)
jne 0x53d23
movq 0x5e82ae(%rip), %rax    # 0x63bfa0
movq (%rax), %rdi
leaq 0x4c2317(%rip), %rsi    # 0x516013
leaq 0x526e5c(%rip), %rdx    # 0x57ab5f
leaq 0x4d13b8(%rip), %rcx    # 0x5250c2
leaq 0x4d138f(%rip), %r8     # 0x5250a0
movl $0x58, %r9d
movb $0x0, %al
callq 0x199f0
callq 0x19370
jmp 0x53d25
leaq 0x4c79ce(%rip), %rdi    # 0x51b6fa
leaq 0x4c79db(%rip), %rsi    # 0x51b70e
callq 0xf1420
movq %rax, 0x30(%rsp)
movq 0x38(%rsp), %rax
movq 0x28(%rax), %rdx
leaq 0x4cf967(%rip), %rdi    # 0x5236b4
leaq 0x4cf968(%rip), %rsi    # 0x5236bc
xorl %eax, %eax
movl %eax, %ecx
callq 0xf69f0
movq %rax, 0x28(%rsp)
movq 0x30(%rsp), %rdi
movq 0x28(%rsp), %rsi
callq 0xf1600
movq 0x28(%rsp), %rdi
callq 0xf6ca0
movq 0x38(%rsp), %rdx
addq $0x8, %rdx
leaq 0x5065d1(%rip), %rdi    # 0x55a35c
leaq 0x4cf9a4(%rip), %rsi    # 0x523736
xorl %ecx, %ecx
movl $0x2, %r8d
callq 0xf6510
movq %rax, 0x28(%rsp)
movq 0x30(%rsp), %rdi
movq 0x28(%rsp), %rsi
callq 0xf1600
movq 0x28(%rsp), %rdi
callq 0xf6ca0
movq 0x38(%rsp), %rdx
addq $0xc, %rdx
leaq 0x4d3cf2(%rip), %rdi    # 0x527abf
leaq 0x4c798a(%rip), %rsi    # 0x51b75e
xorl %ecx, %ecx
callq 0xf64b0
movq %rax, 0x20(%rsp)
movq 0x30(%rsp), %rdi
movq 0x20(%rsp), %rsi
callq 0xf1600
movq 0x38(%rsp), %rax
movq 0x30(%rax), %rdx
leaq 0x566689(%rip), %rdi    # 0x5ba488
leaq 0x4c7974(%rip), %rsi    # 0x51b77a
xorl %eax, %eax
movl %eax, %ecx
callq 0xf69f0
movq %rax, 0x18(%rsp)
movq 0x30(%rsp), %rdi
movq 0x18(%rsp), %rsi
callq 0xf1600
movq 0x18(%rsp), %rdi
movq 0x20(%rsp), %rsi
callq 0xf7320
movq 0x18(%rsp), %rdi
callq 0xf13c0
movq %rax, %rcx
movq 0x38(%rsp), %rax
movq %rcx, 0x40(%rax)
movq 0x38(%rsp), %rdx
leaq 0x4c79c2(%rip), %rdi    # 0x51b816
leaq 0x4d128f(%rip), %rsi    # 0x5250ea
xorl %ecx, %ecx
callq 0xf5f20
movq %rax, 0x28(%rsp)
movq 0x28(%rsp), %rdi
callq 0xf7040
movq 0x30(%rsp), %rdi
movq 0x28(%rsp), %rsi
callq 0xf1600
movq 0x38(%rsp), %rdx
addq $0x1, %rdx
leaq 0x4d1286(%rip), %rdi    # 0x525116
leaq 0x4d1289(%rip), %rsi    # 0x525120
movl $0x1, %ecx
callq 0xf5f20
movq %rax, 0x28(%rsp)
movq 0x28(%rsp), %rdi
callq 0xf7040
movq 0x30(%rsp), %rdi
movq 0x28(%rsp), %rsi
callq 0xf1600
movq 0x38(%rsp), %rdx
addq $0x10, %rdx
leaq 0x4d126e(%rip), %rdi    # 0x52513d
leaq 0x4d126c(%rip), %rsi    # 0x525142
movl $0x20, %ecx
callq 0xf64b0
movq %rax, 0x28(%rsp)
movq 0x28(%rsp), %rdi
callq 0xf7040
movq 0x30(%rsp), %rdi
movq 0x28(%rsp), %rsi
callq 0xf1600
movq 0x38(%rsp), %rdx
addq $0x4, %rdx
leaq 0x4d127c(%rip), %rdi    # 0x52518a
leaq 0x4d127d(%rip), %rsi    # 0x525192
xorl %ecx, %ecx
callq 0xf5f20
movq %rax, 0x28(%rsp)
movq 0x28(%rsp), %rdi
callq 0xf7040
movq 0x30(%rsp), %rdi
movq 0x28(%rsp), %rsi
callq 0xf1600
movq 0x38(%rsp), %rax
movq 0x38(%rax), %rdx
leaq 0x4c7993(%rip), %rdi    # 0x51b8dd
leaq 0x4d1262(%rip), %rsi    # 0x5251b3
xorl %eax, %eax
movl %eax, %ecx
callq 0xf69f0
movq %rax, 0x28(%rsp)
movq 0x30(%rsp), %rdi
movq 0x28(%rsp), %rsi
callq 0xf1600
movq 0x28(%rsp), %rdi
callq 0xf13c0
movq %rax, %rcx
movq 0x38(%rsp), %rax
movq %rcx, 0x48(%rax)
movq 0x28(%rsp), %rdi
callq 0xf7040
movq 0x38(%rsp), %rdi
addq $0x2, %rdi
callq 0xf5f90
movq %rax, 0x8(%rsp)
movq 0x30(%rsp), %rdi
movq 0x8(%rsp), %rsi
callq 0xf1600
movq 0x38(%rsp), %rdx
addq $0x3, %rdx
leaq 0x504dff(%rip), %rdi    # 0x558dbf
leaq 0x4cf7ed(%rip), %rsi    # 0x5237b4
xorl %ecx, %ecx
callq 0xf5f20
movq %rax, 0x10(%rsp)
movq 0x30(%rsp), %rdi
movq 0x10(%rsp), %rsi
callq 0xf1600
movq 0x10(%rsp), %rdi
movq 0x8(%rsp), %rsi
callq 0xf7320
movq 0x38(%rsp), %rdx
addq $0x54, %rdx
leaq 0x4c79c4(%rip), %rdi    # 0x51b9c5
leaq 0x4d125c(%rip), %rsi    # 0x525264
movl $0x1, %ecx
callq 0xf64b0
movq %rax, 0x28(%rsp)
movq 0x28(%rsp), %rdi
callq 0xf7040
movq 0x30(%rsp), %rdi
movq 0x28(%rsp), %rsi
callq 0xf1600
movq 0x38(%rsp), %rdx
addq $0x50, %rdx
leaq 0x4d1244(%rip), %rdi    # 0x525284
leaq 0x4d1248(%rip), %rsi    # 0x52528f
xorl %ecx, %ecx
callq 0xf5f20
movq %rax, 0x28(%rsp)
movq 0x28(%rsp), %rdi
callq 0xf7040
movq 0x30(%rsp), %rdi
movq 0x28(%rsp), %rsi
callq 0xf1600
movq 0x38(%rsp), %rdx
addq $0x58, %rdx
leaq 0x4c7826(%rip), %rdi    # 0x51b8a2
leaq 0x4c7831(%rip), %rsi    # 0x51b8b4
xorl %ecx, %ecx
callq 0xf5f20
movq %rax, 0x28(%rsp)
movq 0x28(%rsp), %rdi
callq 0xf7040
movq 0x30(%rsp), %rdi
movq 0x28(%rsp), %rsi
callq 0xf1600
movq 0x30(%rsp), %rdi
leaq 0x24c47c(%rip), %rsi    # 0x2a0530
callq 0xf17f0
movq 0x30(%rsp), %rax
addq $0x48, %rsp
retq
nopw %cs:(%rax,%rax)