// File: /workspace/github_c_makefile_star2_O0/genometools[P]genometools/src/match/querymatch-align.c
// Function: gt_querymatchoutoptions_new
GtQuerymatchoutoptions *gt_querymatchoutoptions_new(const
                                                     GtSeedExtendDisplayFlag
                                                      *out_display_flag,
                                                    const char *indexname,
                                                    GtError *err)
{
  GtQuerymatchoutoptions *querymatchoutoptions;

  if (indexname != NULL)
  {
    GtAlphabet *alphabet;
    GtEncseqMetadata *emd = gt_encseq_metadata_new(indexname,err);

    if (emd == NULL)
    {
      return NULL;
    }
    alphabet = gt_encseq_metadata_alphabet(emd);
    querymatchoutoptions = gt_malloc(sizeof *querymatchoutoptions);
    querymatchoutoptions->emd = emd;
    querymatchoutoptions->characters = gt_alphabet_characters(alphabet);
    querymatchoutoptions->wildcardshow = gt_alphabet_wildcard_show(alphabet);
  } else
  {
    querymatchoutoptions = gt_malloc(sizeof *querymatchoutoptions);
    querymatchoutoptions->emd = NULL;
    querymatchoutoptions->characters = NULL;
    querymatchoutoptions->wildcardshow = 0;
  }
  querymatchoutoptions->front_trace = NULL;
  querymatchoutoptions->ggemi = NULL;
  querymatchoutoptions->useqbuffer = NULL;
  querymatchoutoptions->useqbuffer_size = 0;
  querymatchoutoptions->vseqbuffer = NULL;
  querymatchoutoptions->vseqbuffer_size = 0;
  querymatchoutoptions->eoplist_reader_verify = NULL;
  querymatchoutoptions->pol_info = NULL;
  querymatchoutoptions->trace_delta
    = gt_querymatch_trace_delta_display(out_display_flag);
  querymatchoutoptions->eoplist_reader = gt_eoplist_reader_new();
  querymatchoutoptions->eoplist = gt_eoplist_new();
  if (gt_querymatch_alignment_display(out_display_flag))
  {
    gt_eoplist_reader_reset_width(querymatchoutoptions->eoplist_reader,
                                  gt_querymatch_display_alignmentwidth(
                                       out_display_flag));
  }
  querymatchoutoptions->db_esr_for_align_show = NULL;
  querymatchoutoptions->query_esr_for_align_show = NULL;
  querymatchoutoptions->always_polished_ends = true;
  return querymatchoutoptions;
}

// Assembly:
subq $0x48, %rsp
movq %rdi, 0x38(%rsp)
movq %rsi, 0x30(%rsp)
movq %rdx, 0x28(%rsp)
cmpq $0x0, 0x30(%rsp)
je 0x2639ed
movq 0x30(%rsp), %rdi
movq 0x28(%rsp), %rsi
callq 0xd4e10
movq %rax, 0x10(%rsp)
cmpq $0x0, 0x10(%rsp)
jne 0x263989
movq $0x0, 0x40(%rsp)
jmp 0x263b31
movq 0x10(%rsp), %rdi
callq 0xd6680
movq %rax, 0x18(%rsp)
movl $0xb8, %edi
leaq 0x318e29(%rip), %rsi    # 0x57c7cd
movl $0x42, %edx
callq 0xe80f0
movq %rax, 0x20(%rsp)
movq 0x10(%rsp), %rcx
movq 0x20(%rsp), %rax
movq %rcx, 0x68(%rax)
movq 0x18(%rsp), %rdi
callq 0x7e970
movq %rax, %rcx
movq 0x20(%rsp), %rax
movq %rcx, 0x50(%rax)
movq 0x18(%rsp), %rdi
callq 0x7e9d0
movb %al, %cl
movq 0x20(%rsp), %rax
movb %cl, 0x70(%rax)
jmp 0x263a2b
movl $0xb8, %edi
leaq 0x318dd4(%rip), %rsi    # 0x57c7cd
movl $0x48, %edx
callq 0xe80f0
movq %rax, 0x20(%rsp)
movq 0x20(%rsp), %rax
movq $0x0, 0x68(%rax)
movq 0x20(%rsp), %rax
movq $0x0, 0x50(%rax)
movq 0x20(%rsp), %rax
movb $0x0, 0x70(%rax)
movq 0x20(%rsp), %rax
movq $0x0, 0x40(%rax)
movq 0x20(%rsp), %rax
movq $0x0, 0x48(%rax)
movq 0x20(%rsp), %rax
movq $0x0, 0x18(%rax)
movq 0x20(%rsp), %rax
movq $0x0, (%rax)
movq 0x20(%rsp), %rax
movq $0x0, 0x20(%rax)
movq 0x20(%rsp), %rax
movq $0x0, 0x8(%rax)
movq 0x20(%rsp), %rax
movq $0x0, 0x38(%rax)
movq 0x20(%rsp), %rax
movq $0x0, 0xb0(%rax)
movq 0x38(%rsp), %rdi
callq 0x265ca0
movq %rax, %rcx
movq 0x20(%rsp), %rax
movq %rcx, 0x10(%rax)
callq 0x4c1a20
movq %rax, %rcx
movq 0x20(%rsp), %rax
movq %rcx, 0x30(%rax)
callq 0x4c1890
movq %rax, %rcx
movq 0x20(%rsp), %rax
movq %rcx, 0x28(%rax)
movq 0x38(%rsp), %rdi
callq 0x265cd0
testb $0x1, %al
jne 0x263add
jmp 0x263b01
movq 0x20(%rsp), %rax
movq 0x30(%rax), %rax
movq %rax, 0x8(%rsp)
movq 0x38(%rsp), %rdi
callq 0x265c70
movq 0x8(%rsp), %rdi
movl %eax, %esi
callq 0x4c31a0
movq 0x20(%rsp), %rax
movq $0x0, 0x58(%rax)
movq 0x20(%rsp), %rax
movq $0x0, 0x60(%rax)
movq 0x20(%rsp), %rax
movb $0x1, 0xa8(%rax)
movq 0x20(%rsp), %rax
movq %rax, 0x40(%rsp)
movq 0x40(%rsp), %rax
addq $0x48, %rsp
retq
nopl (%rax,%rax)