// File: /workspace/github_cpp_makefile_star2_O2/ncbi[P]amr/seq.cpp
// Function: Seq_sp::SubstMat::qc() const
void SubstMat::qc () const
{
  if (! qc_on)
    return;
    
  // sim[][]
  FOR (size_t, i, sim_size)
  {
    if (! goodIndex (i))
      continue;
    QC_IMPLY (! isAmbigAa (char (i)), sim [i] [i] >= 0.0);
    FOR (size_t, j, sim_size)
    {
      if (! goodIndex (j))
        continue;
      QC_ASSERT (fabs (sim [i] [j] - sim [j] [i]) < 1e-6);  // PAR
    }
  }
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
subq $0x118, %rsp            # imm = 0x118
leaq 0x3c2b8(%rip), %rax     # 0x89ac8
cmpb $0x1, (%rax)
jne 0x4d8ed
movq %rdi, %r12
addq $0x8, %r12
xorl %r14d, %r14d
movq %r12, %r15
movq %r12, 0x10(%rsp)
cmpq $0x80, %r14
je 0x4d8ed
movq %r14, %rbx
shlq $0xa, %rbx
addq 0x10(%rsp), %rbx
movsd (%rbx,%r14,8), %xmm0
ucomisd %xmm0, %xmm0
jp 0x4d8da
movsbl %r14b, %edi
callq 0x5b377
testb %al, %al
jne 0x4d87f
leaq (%rbx,%r14,8), %rbx
callq 0xc070
andl $0x0, (%rax)
movsd (%rbx), %xmm0
ucomisd 0x1570f(%rip), %xmm0    # 0x62f88
jb 0x4d9d3
movq %r12, %r13
movq 0x10(%rsp), %rbp
xorl %ebx, %ebx
cmpq $0x80, %rbx
je 0x4d8da
movsd (%rbp), %xmm0
ucomisd %xmm0, %xmm0
jp 0x4d8c7
callq 0xc070
andl $0x0, (%rax)
movsd (%r15,%rbx,8), %xmm0
subsd (%r13), %xmm0
andpd 0x10e87(%rip), %xmm0    # 0x5e740
movsd 0x156bf(%rip), %xmm1    # 0x62f80
ucomisd %xmm0, %xmm1
jbe 0x4d8ff
incq %rbx
addq $0x408, %rbp            # imm = 0x408
addq $0x400, %r13            # imm = 0x400
jmp 0x4d889
incq %r14
addq $0x8, %r12
addq $0x400, %r15            # imm = 0x400
jmp 0x4d82b
addq $0x118, %rsp            # imm = 0x118
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
retq
callq 0xc6d0
testl %eax, %eax
jne 0x4daa7
leaq 0x156ff(%rip), %rsi     # 0x63012
leaq 0x78(%rsp), %rdi
leaq 0xf(%rsp), %rdx
callq 0xdbbe
leaq 0x58(%rsp), %rdi
movl $0xcd4, %esi            # imm = 0xCD4
callq 0xe2d5
leaq 0x98(%rsp), %rdi
leaq 0x78(%rsp), %rsi
leaq 0x58(%rsp), %rdx
callq 0xe26e
leaq 0x10882(%rip), %rdx     # 0x5e1d1
leaq 0xb8(%rsp), %rdi
leaq 0x98(%rsp), %rsi
callq 0xe24f
leaq 0x15f2e(%rip), %rsi     # 0x63899
leaq 0x18(%rsp), %rdi
leaq 0xe(%rsp), %rdx
callq 0xdbbe
leaq 0x10f4b(%rip), %rdx     # 0x5e8cc
leaq 0x38(%rsp), %rdi
leaq 0x18(%rsp), %rsi
callq 0xe24f
leaq 0xd8(%rsp), %rdi
leaq 0xb8(%rsp), %rsi
leaq 0x38(%rsp), %rdx
callq 0xe26e
leaq 0x15f25(%rip), %rdx     # 0x638d6
leaq 0xf8(%rsp), %rdi
leaq 0xd8(%rsp), %rsi
callq 0xe24f
leaq 0xf8(%rsp), %rdi
callq 0x101d0
callq 0xc6d0
testl %eax, %eax
jne 0x4daa7
leaq 0x1562b(%rip), %rsi     # 0x63012
leaq 0x78(%rsp), %rdi
leaq 0xf(%rsp), %rdx
callq 0xdbbe
leaq 0x58(%rsp), %rdi
movl $0xccf, %esi            # imm = 0xCCF
callq 0xe2d5
leaq 0x98(%rsp), %rdi
leaq 0x78(%rsp), %rsi
leaq 0x58(%rsp), %rdx
callq 0xe26e
leaq 0x107ae(%rip), %rdx     # 0x5e1d1
leaq 0xb8(%rsp), %rdi
leaq 0x98(%rsp), %rsi
callq 0xe24f
leaq 0x15e5a(%rip), %rsi     # 0x63899
leaq 0x18(%rsp), %rdi
leaq 0xe(%rsp), %rdx
callq 0xdbbe
leaq 0x10e77(%rip), %rdx     # 0x5e8cc
leaq 0x38(%rsp), %rdi
leaq 0x18(%rsp), %rsi
callq 0xe24f
leaq 0xd8(%rsp), %rdi
leaq 0xb8(%rsp), %rsi
leaq 0x38(%rsp), %rdx
callq 0xe26e
leaq 0x15e3e(%rip), %rdx     # 0x638c3
leaq 0xf8(%rsp), %rdi
leaq 0xd8(%rsp), %rsi
callq 0xe24f
leaq 0xf8(%rsp), %rdi
callq 0x101d0
pushq $0x1
popq %rdi
callq 0xc6f0
jmp 0x4dabd
jmp 0x4dacf
jmp 0x4dae3
jmp 0x4daf4
jmp 0x4db03
jmp 0x4db15
jmp 0x4db27
movq %rax, %rbx
leaq 0xf8(%rsp), %rdi
callq 0xcbe8
jmp 0x4dad2
movq %rax, %rbx
leaq 0xd8(%rsp), %rdi
callq 0xcbe8
jmp 0x4dae6
jmp 0x4db36
movq %rax, %rbx
leaq 0x38(%rsp), %rdi
callq 0xcbe8
jmp 0x4daf7
jmp 0x4db45
movq %rax, %rbx
leaq 0x18(%rsp), %rdi
callq 0xcbe8
jmp 0x4db06
movq %rax, %rbx
leaq 0xb8(%rsp), %rdi
callq 0xcbe8
jmp 0x4db18
movq %rax, %rbx
leaq 0x98(%rsp), %rdi
callq 0xcbe8
jmp 0x4db2a
movq %rax, %rbx
leaq 0x58(%rsp), %rdi
callq 0xcbe8
jmp 0x4db39
movq %rax, %rbx
leaq 0x78(%rsp), %rdi
callq 0xcbe8
jmp 0x4db48
movq %rax, %rbx
movq %rbx, %rdi
callq 0xcaa0