LLM4Binary/decompile-bench-makefile huggingface dataset:
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/feature_node_iterator.c
// Function: gt_feature_node_iterator_example
int gt_feature_node_iterator_example(GT_UNUSED GtError *err)
{
  GtFeatureNodeIterator *fni;
  GtFeatureNode *fn, *node;
  fn = (GtFeatureNode*) gt_feature_node_new_standard_gene();

  /* an example genome node iterator use case */
  fni = gt_feature_node_iterator_new(fn);
  while ((node = gt_feature_node_iterator_next(fni))) {
    /* do something with <node> */
  }
  gt_feature_node_iterator_delete(fni);

  gt_genome_node_delete((GtGenomeNode*) fn);
  return 0;
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
callq 0x18fd1
movq %rax, %rbx
movq %rax, %rdi
callq 0x1b8e0
movq %rax, %r14
movq %r14, %rdi
callq 0x1bb1e
testq %rax, %rax
jne 0x1bbba
movq %r14, %rdi
callq 0x1bbe1
movq %rbx, %rdi
callq 0x1d1e3
xorl %eax, %eax
addq $0x8, %rsp
popq %rbx
popq %r14
retq
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/feature_node_iterator.c
// Function: gt_feature_node_iterator_delete
void gt_feature_node_iterator_delete(GtFeatureNodeIterator *fni)
{
  if (!fni) return;
  gt_genome_node_delete((GtGenomeNode*) fni->fn);
  gt_array_delete(fni->feature_stack);
  gt_free(fni);
}

// Assembly:
testq %rdi, %rdi
je 0x1bc0e
pushq %rbx
movq %rdi, %rbx
movq (%rdi), %rdi
callq 0x1d1e3
movq 0x8(%rbx), %rdi
callq 0x4c19d
leaq 0xb2c13(%rip), %rsi     # 0xce815
pushq $0x7d
popq %rdx
movq %rbx, %rdi
popq %rbx
jmp 0xd249
retq
nop
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/feature_node_observer.c
// Function: gt_feature_node_observer_delete
void gt_feature_node_observer_delete(GtFeatureNodeObserver *o)
{
  if (!o) return;
  if (o->reference_count) {
    o->reference_count--;
    return;
  }
  if (o->data)
    gt_free(o->data);
  gt_free(o);
}

// Assembly:
pushq %rbx
testq %rdi, %rdi
je 0x1bc82
movq %rdi, %rbx
movq 0x68(%rdi), %rax
testq %rax, %rax
je 0x1bc84
decq %rax
movq %rax, 0x68(%rbx)
popq %rbx
retq
movq 0x60(%rbx), %rdi
testq %rdi, %rdi
je 0x1bc9c
leaq 0xb2c48(%rip), %rsi     # 0xce8dc
pushq $0x2a
popq %rdx
callq 0xd249
leaq 0xb2c39(%rip), %rsi     # 0xce8dc
pushq $0x2b
popq %rdx
movq %rbx, %rdi
popq %rbx
jmp 0xd249
nop
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/feature_visitor.c
// Function: gt_feature_visitor_class
const GtNodeVisitorClass* gt_feature_visitor_class()
{
  static const GtNodeVisitorClass *gvc = NULL;
  gt_class_alloc_lock_enter();
  if (!gvc) {
    gvc = gt_node_visitor_class_new(sizeof (GtFeatureVisitor),
                                    feature_visitor_free,
                                    NULL,
                                    feature_visitor_feature_node,
                                    feature_visitor_region_node,
                                    NULL,
                                    NULL);
  }
  gt_class_alloc_lock_leave();
  return gvc;
}

// Assembly:
pushq %rax
callq 0x4f21f
cmpq $0x0, 0x113e6a(%rip)    # 0x12fb28
jne 0x1bcee
andq $0x0, (%rsp)
leaq 0x30(%rip), %rsi        # 0x1bcfc
leaq 0x82(%rip), %rcx        # 0x1bd55
leaq 0xf7(%rip), %r8         # 0x1bdd1
pushq $0x18
popq %rdi
xorl %edx, %edx
xorl %r9d, %r9d
callq 0x25f10
movq %rax, 0x113e3a(%rip)    # 0x12fb28
callq 0x4f266
movq 0x113e2e(%rip), %rax    # 0x12fb28
popq %rcx
retq
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/feature_visitor.c
// Function: feature_visitor_feature_node
static int feature_visitor_feature_node(GtNodeVisitor *gv, GtFeatureNode *fn,
                                        GtError *err)
{
  GtFeatureVisitor *v = feature_visitor_cast(gv);
  int rval = 0;
  gt_error_check(err);
  rval = gt_feature_index_add_feature_node(v->feature_index, fn, err);
  return rval;
}

// Assembly:
pushq %r15
pushq %r14
pushq %rbx
movq %rdx, %rbx
movq %rsi, %r14
movq %rdi, %r15
callq 0x1bcb0
movq %rax, %rdi
movq %r15, %rsi
callq 0x2603e
movq %rax, %r15
testq %rbx, %rbx
je 0x1bd87
movq %rbx, %rdi
callq 0xc103
testb %al, %al
jne 0x1bd9b
movq 0x10(%r15), %rdi
movq %r14, %rsi
movq %rbx, %rdx
popq %rbx
popq %r14
popq %r15
jmp 0x16acd
movq 0x112216(%rip), %rax    # 0x12dfb8
movq (%rax), %rdi
leaq 0xae2ba(%rip), %rsi     # 0xca066
leaq 0xae8a6(%rip), %rdx     # 0xca659
leaq 0xb2bba(%rip), %rcx     # 0xce974
leaq 0xb2b7f(%rip), %r8      # 0xce940
pushq $0x2e
popq %r9
xorl %eax, %eax
callq 0xb8c0
callq 0xb300
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/feature_visitor.c
// Function: gt_feature_visitor_new
GtNodeVisitor* gt_feature_visitor_new(GtFeatureIndex *fi)
{
  GtNodeVisitor *gv;
  GtFeatureVisitor *feature_visitor;
  gt_assert(fi != NULL);
  gv = gt_node_visitor_create(gt_feature_visitor_class());
  feature_visitor = feature_visitor_cast(gv);
  feature_visitor->feature_index = gt_feature_index_ref(fi);
  gt_assert(feature_visitor != NULL);
  return gv;
}

// Assembly:
pushq %r15
pushq %r14
pushq %rbx
testq %rdi, %rdi
je 0x1be92
movq %rdi, %rbx
callq 0x1bcb0
movq %rax, %rdi
callq 0x25fe0
movq %rax, %r14
callq 0x1bcb0
movq %rax, %rdi
movq %r14, %rsi
callq 0x2603e
movq %rax, %r15
movq %rbx, %rdi
callq 0x16907
movq %rax, 0x10(%r15)
movq %r14, %rax
popq %rbx
popq %r14
popq %r15
retq
movq 0x11211f(%rip), %rax    # 0x12dfb8
movq (%rax), %rdi
leaq 0xae1c3(%rip), %rsi     # 0xca066
leaq 0xb2a74(%rip), %rdx     # 0xce91e
leaq 0xb2a78(%rip), %rcx     # 0xce929
leaq 0xb2a88(%rip), %r8      # 0xce940
pushq $0x50
popq %r9
xorl %eax, %eax
callq 0xb8c0
callq 0xb300
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/genome_node.c
// Function: gt_genome_node_ref
GtGenomeNode* gt_genome_node_ref(GtGenomeNode *gn)
{
  gt_assert(gn);
  gt_rwlock_wrlock(gn->lock);
  gn->reference_count++;
  gt_rwlock_unlock(gn->lock);
  return gn;
}

// Assembly:
pushq %rbx
testq %rdi, %rdi
je 0x1beeb
movq %rdi, %rbx
movq 0x18(%rdi), %rdi
callq 0x15e99
incl 0x24(%rbx)
movq 0x18(%rbx), %rdi
callq 0x15f0a
movq %rbx, %rax
popq %rbx
retq
movq 0x1120c6(%rip), %rax    # 0x12dfb8
movq (%rax), %rdi
leaq 0xae16a(%rip), %rsi     # 0xca066
leaq 0xc28d2(%rip), %rdx     # 0xde7d5
leaq 0xb2aa3(%rip), %rcx     # 0xce9ad
leaq 0xb2aaf(%rip), %r8      # 0xce9c0
pushq $0x2b
popq %r9
xorl %eax, %eax
callq 0xb8c0
callq 0xb300
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/genome_node.c
// Function: gt_genome_node_class_new
const GtGenomeNodeClass*
gt_genome_node_class_new(size_t size,
                         GtGenomeNodeFreeFunc free,
                         GtGenomeNodeSetSeqidFunc get_seqid,
                         GtGenomeNodeGetIdstrFunc get_idstr,
                         GtGenomeNodeGetRangeFunc get_range,
                         GtGenomeNodeSetRangeFunc set_range,
                         GtGenomeNodeChangeSeqidFunc change_seqid,
                         GtGenomeNodeAcceptFunc accept)
{
  GtGenomeNodeClass *c_class;
  gt_assert(size);
  c_class = gt_class_alloc(sizeof *c_class);
  c_class->size = size;
  c_class->free = free;
  c_class->get_seqid = get_seqid;
  c_class->get_idstr = get_idstr;
  c_class->get_range = get_range;
  c_class->set_range = set_range;
  c_class->change_seqid = change_seqid;
  c_class->accept = accept;
  return c_class;
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
pushq %rax
testq %rdi, %rdi
je 0x1bf83
movq %r9, %rbx
movq %r8, %r14
movq %rcx, %r15
movq %rdx, %r12
movq %rsi, %r13
movq %rdi, %rbp
pushq $0x40
popq %rdi
callq 0x4f148
movq %rbp, (%rax)
movq %r13, 0x8(%rax)
movq %r12, 0x10(%rax)
movq %r15, 0x18(%rax)
movq %r14, 0x20(%rax)
movq %rbx, 0x28(%rax)
movq 0x40(%rsp), %rcx
movq %rcx, 0x30(%rax)
movq 0x48(%rsp), %rcx
movq %rcx, 0x38(%rax)
addq $0x8, %rsp
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
retq
movq 0x11202e(%rip), %rax    # 0x12dfb8
movq (%rax), %rdi
leaq 0xae0d2(%rip), %rsi     # 0xca066
leaq 0xbd85a(%rip), %rdx     # 0xd97f5
leaq 0xb2a39(%rip), %rcx     # 0xce9db
leaq 0xb2a17(%rip), %r8      # 0xce9c0
pushq $0x3d
popq %r9
xorl %eax, %eax
callq 0xb8c0
callq 0xb300
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/genome_node.c
// Function: gt_genome_node_cmp_generic
static inline int gt_genome_node_cmp_generic(GtGenomeNode *gn_a,
                                             GtGenomeNode *gn_b,
                                             bool numeric_cmp)
{
  GtRange range_a, range_b;
  int rval;
  const char *id_a, *id_b;
  gt_assert(gn_a && gn_b);
  /* ensure that region nodes come first and sequence nodes come last,
     otherwise we don't get a valid GFF3 stream */
  if ((rval = compare_genome_node_type(gn_a, gn_b)))
    return rval;

  id_a = gt_str_get(gt_genome_node_get_idstr(gn_a));
  id_b = gt_str_get(gt_genome_node_get_idstr(gn_b));
  if (numeric_cmp) {
    GtUword anum, bnum;
    int arval, brval;
    arval = gt_parse_uword(&anum, id_a);
    brval = gt_parse_uword(&bnum, id_b);
    if (arval == 0 && brval == 0)
      rval = anum-bnum;
    else if (arval == 0)
      return -1;
    else if (brval == 0)
      return 1;
    else
      rval = 0;
    if (rval)
      return rval;
  } else {
    if ((rval = gt_md5_seqid_cmp_seqids(id_a, id_b))) {
      return rval;
    }
  }
  range_a = gt_genome_node_get_range(gn_a),
  range_b = gt_genome_node_get_range(gn_b);
  return gt_range_compare(&range_a, &range_b);
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r12
pushq %rbx
subq $0x20, %rsp
testq %rdi, %rdi
je 0x1c0b3
movq %rsi, %rbx
testq %rsi, %rsi
je 0x1c0b3
movl %edx, %ebp
movq %rdi, %r14
movq %rbx, %rsi
callq 0x1d299
testl %eax, %eax
je 0x1bffc
addq $0x20, %rsp
popq %rbx
popq %r12
popq %r14
popq %r15
popq %rbp
retq
movq %r14, %rdi
callq 0x1c36e
movq %rax, %rdi
callq 0x143d2
movq %rax, %r15
movq %rbx, %rdi
callq 0x1c36e
movq %rax, %rdi
callq 0x143d2
movq %rax, %r12
testb %bpl, %bpl
je 0x1c052
leaq 0x10(%rsp), %rdi
movq %r15, %rsi
callq 0x117e9
movl %eax, %ebp
movq %rsp, %rdi
movq %r12, %rsi
callq 0x117e9
movl %ebp, %ecx
orl %eax, %ecx
jne 0x1c063
movl 0x10(%rsp), %eax
subl (%rsp), %eax
jne 0x1bfef
jmp 0x1c080
movq %r15, %rdi
movq %r12, %rsi
callq 0x59aa2
testl %eax, %eax
jne 0x1bfef
jmp 0x1c080
testl %eax, %eax
sete %al
testl %ebp, %ebp
sete %cl
orb %al, %cl
je 0x1c080
xorl %eax, %eax
cmpl $0x1, %ebp
sbbl %eax, %eax
orl $0x1, %eax
jmp 0x1bfef
movq %r14, %rdi
callq 0x1c3c4
leaq 0x10(%rsp), %r14
movq %rax, (%r14)
movq %rdx, 0x8(%r14)
movq %rbx, %rdi
callq 0x1c3c4
movq %rsp, %rsi
movq %rax, (%rsi)
movq %rdx, 0x8(%rsi)
movq %r14, %rdi
callq 0x5cec8
jmp 0x1bfef
movq 0x111efe(%rip), %rax    # 0x12dfb8
movq (%rax), %rdi
leaq 0xadfa2(%rip), %rsi     # 0xca066
leaq 0xb2e58(%rip), %rdx     # 0xcef23
leaq 0xb2e5e(%rip), %rcx     # 0xcef30
leaq 0xb28e7(%rip), %r8      # 0xce9c0
movl $0x95, %r9d
xorl %eax, %eax
callq 0xb8c0
callq 0xb300
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/genome_node.c
// Function: gt_genome_node_create
GtGenomeNode* gt_genome_node_create(const GtGenomeNodeClass *gnc)
{
  GtGenomeNode *gn;
  gt_assert(gnc && gnc->size);
  gn                     = gt_malloc(gnc->size);
  gn->c_class            = gnc;
  gn->filename           = NULL; /* means the node is generated */
  gn->line_number        = 0;
  gn->reference_count    = 0;
  gn->userdata           = NULL;
  gn->userdata_nof_items = 0;
#ifdef GT_THREADS_ENABLED
  gn->lock              = gt_rwlock_new();
#endif
  return gn;
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
testq %rdi, %rdi
je 0x1c142
movq %rdi, %rbx
movq (%rdi), %rdi
testq %rdi, %rdi
je 0x1c142
leaq 0xb28b2(%rip), %rsi     # 0xce9c0
movl $0xdb, %edx
callq 0xccb0
movq %rax, %r14
movq %rbx, (%rax)
andq $0x0, 0x20(%rax)
andl $0x0, 0x28(%rax)
xorps %xmm0, %xmm0
movups %xmm0, 0x8(%rax)
callq 0x15d09
movq %rax, 0x18(%r14)
movq %r14, %rax
addq $0x8, %rsp
popq %rbx
popq %r14
retq
movq 0x111e6f(%rip), %rax    # 0x12dfb8
movq (%rax), %rdi
leaq 0xadf13(%rip), %rsi     # 0xca066
leaq 0xb289a(%rip), %rdx     # 0xce9f4
leaq 0xb28a4(%rip), %rcx     # 0xcea05
leaq 0xb2858(%rip), %r8      # 0xce9c0
movl $0xda, %r9d
xorl %eax, %eax
callq 0xb8c0
callq 0xb300
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/genome_node.c
// Function: gt_genome_node_set_origin
void gt_genome_node_set_origin(GtGenomeNode *gn, GtStr *filename,
                               unsigned int line_number)
{
  gt_assert(gn && filename && line_number);
  gt_str_delete(gn->filename);
  gn->filename = gt_str_ref(filename);
  gn->line_number = line_number;
}

// Assembly:
pushq %r15
pushq %r14
pushq %rbx
testq %rdi, %rdi
je 0x1c1b4
movq %rsi, %r15
testq %rsi, %rsi
je 0x1c1b4
movl %edx, %ebx
testl %edx, %edx
je 0x1c1b4
movq %rdi, %r14
movq 0x8(%rdi), %rdi
callq 0x152db
movq %r15, %rdi
callq 0x146aa
movq %rax, 0x8(%r14)
movl %ebx, 0x20(%r14)
popq %rbx
popq %r14
popq %r15
retq
movq 0x111dfd(%rip), %rax    # 0x12dfb8
movq (%rax), %rdi
leaq 0xadea1(%rip), %rsi     # 0xca066
leaq 0xb284f(%rip), %rdx     # 0xcea1b
leaq 0xb2866(%rip), %rcx     # 0xcea39
leaq 0xb27e6(%rip), %r8      # 0xce9c0
movl $0xeb, %r9d
xorl %eax, %eax
callq 0xb8c0
callq 0xb300
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/genome_node.c
// Function: gt_genome_node_get_seqid
GtStr* gt_genome_node_get_seqid(GtGenomeNode *gn)
{
  gt_assert(gn && gn->c_class);
  if (gn->c_class->get_seqid)
    return gn->c_class->get_seqid(gn);
  return NULL;
}

// Assembly:
testq %rdi, %rdi
je 0x1c335
movq (%rdi), %rax
testq %rax, %rax
je 0x1c335
movq 0x10(%rax), %rax
testq %rax, %rax
je 0x1c332
jmpq *%rax
xorl %eax, %eax
retq
pushq %rax
movq 0x111c7b(%rip), %rax    # 0x12dfb8
movq (%rax), %rdi
leaq 0xadd1f(%rip), %rsi     # 0xca066
leaq 0xb2796(%rip), %rdx     # 0xceae4
leaq 0xb27a1(%rip), %rcx     # 0xceaf6
leaq 0xb2664(%rip), %r8      # 0xce9c0
movl $0x110, %r9d            # imm = 0x110
xorl %eax, %eax
callq 0xb8c0
callq 0xb300
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/genome_node.c
// Function: gt_genome_node_get_length
GtUword gt_genome_node_get_length(GtGenomeNode *gn)
{
  GtRange range;
  gt_assert(gn && gn->c_class && gn->c_class->get_range);
  range = gt_genome_node_get_range(gn);
  return gt_range_length(&range);
}

// Assembly:
subq $0x18, %rsp
testq %rdi, %rdi
je 0x1c453
movq (%rdi), %rax
testq %rax, %rax
je 0x1c453
cmpq $0x0, 0x20(%rax)
je 0x1c453
callq 0x1c3c4
leaq 0x8(%rsp), %rdi
movq %rax, (%rdi)
movq %rdx, 0x8(%rdi)
callq 0x5d05e
addq $0x18, %rsp
retq
movq 0x111b5e(%rip), %rax    # 0x12dfb8
movq (%rax), %rdi
leaq 0xadc02(%rip), %rsi     # 0xca066
leaq 0xb26e9(%rip), %rdx     # 0xceb54
leaq 0xb2727(%rip), %rcx     # 0xceb99
leaq 0xb2547(%rip), %r8      # 0xce9c0
movl $0x12f, %r9d            # imm = 0x12F
xorl %eax, %eax
callq 0xb8c0
callq 0xb300
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/genome_node.c
// Function: gt_genome_node_set_range
void gt_genome_node_set_range(GtGenomeNode *gn, const GtRange *range)
{
  gt_assert(gn && gn->c_class);
  if (gn->c_class->set_range) {
    gt_assert(range->start <= range->end);
    gn->c_class->set_range(gn, range);
  }
}

// Assembly:
pushq %rax
testq %rdi, %rdi
je 0x1c4b0
movq (%rdi), %rax
testq %rax, %rax
je 0x1c4b0
movq 0x28(%rax), %rax
testq %rax, %rax
je 0x1c4ae
movq (%rsi), %rcx
cmpq 0x8(%rsi), %rcx
ja 0x1c4de
popq %rcx
jmpq *%rax
popq %rax
retq
movq 0x111b01(%rip), %rax    # 0x12dfb8
movq (%rax), %rdi
leaq 0xadba5(%rip), %rsi     # 0xca066
leaq 0xb261c(%rip), %rdx     # 0xceae4
leaq 0xb26e4(%rip), %rcx     # 0xcebb3
leaq 0xb24ea(%rip), %r8      # 0xce9c0
movl $0x136, %r9d            # imm = 0x136
jmp 0x1c50a
movq 0x111ad3(%rip), %rax    # 0x12dfb8
movq (%rax), %rdi
leaq 0xadb77(%rip), %rsi     # 0xca066
leaq 0xb26d6(%rip), %rdx     # 0xcebcc
leaq 0xb26b6(%rip), %rcx     # 0xcebb3
leaq 0xb24bc(%rip), %r8      # 0xce9c0
movl $0x138, %r9d            # imm = 0x138
xorl %eax, %eax
callq 0xb8c0
callq 0xb300
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/genome_node.c
// Function: gt_genome_nodes_show
void gt_genome_nodes_show(GtArray *nodes, GtFile *outfp)
{
  GtNodeVisitor *gff3_visitor;
  GtUword i;
  gt_assert(nodes);
  gff3_visitor = gt_gff3_visitor_new(outfp);
  for (i = 0; i < gt_array_size(nodes); i++) {
    GT_UNUSED int had_err;
    had_err = gt_genome_node_accept(*(GtGenomeNode**) gt_array_get(nodes, i),
                                    gff3_visitor, NULL);
    gt_assert(!had_err); /* should not happen */
  }
  gt_node_visitor_delete(gff3_visitor);
}

// Assembly:
pushq %r15
pushq %r14
pushq %rbx
testq %rdi, %rdi
je 0x1c8aa
movq %rdi, %rbx
movq %rsi, %rdi
callq 0x24161
movq %rax, %r14
xorl %r15d, %r15d
movq %rbx, %rdi
callq 0x4b988
cmpq %rax, %r15
jae 0x1c89d
movq %rbx, %rdi
movq %r15, %rsi
callq 0x4b48e
movq (%rax), %rdi
movq %r14, %rsi
xorl %edx, %edx
callq 0x1c56c
incq %r15
testl %eax, %eax
je 0x1c839
movq 0x11174c(%rip), %rax    # 0x12dfb8
movq (%rax), %rdi
leaq 0xad7f0(%rip), %rsi     # 0xca066
leaq 0xadd96(%rip), %rdx     # 0xca613
leaq 0xb2419(%rip), %rcx     # 0xcec9d
leaq 0xb2135(%rip), %r8      # 0xce9c0
movl $0x185, %r9d            # imm = 0x185
xorl %eax, %eax
callq 0xb8c0
callq 0xb300
movq %r14, %rdi
popq %rbx
popq %r14
popq %r15
jmp 0x264ba
movq 0x111707(%rip), %rax    # 0x12dfb8
movq (%rax), %rdi
leaq 0xad7ab(%rip), %rsi     # 0xca066
leaq 0xb1d71(%rip), %rdx     # 0xce633
leaq 0xb23d4(%rip), %rcx     # 0xcec9d
leaq 0xb20f0(%rip), %r8      # 0xce9c0
movl $0x17f, %r9d            # imm = 0x17F
jmp 0x1c891
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/genome_node.c
// Function: gt_genome_nodes_are_equal_region_nodes
bool gt_genome_nodes_are_equal_region_nodes(GtGenomeNode *gn_a,
                                            GtGenomeNode *gn_b)
{
  void *sr_a, *sr_b;

  sr_a = gn_a ? gt_region_node_try_cast(gn_a) : NULL;
  sr_b = gn_b ? gt_region_node_try_cast(gn_b) : NULL;

  if (sr_a && sr_b && !gt_str_cmp(gt_genome_node_get_seqid(gn_a),
                                  gt_genome_node_get_seqid(gn_b))) {
    return true;
  }
  return false;
}

// Assembly:
pushq %rbp
pushq %r14
pushq %rbx
movq %rsi, %rbx
movq %rdi, %r14
testq %rdi, %rdi
je 0x1c8f8
movq %r14, %rdi
callq 0x26c21
testq %rax, %rax
setne %bpl
jmp 0x1c8fa
xorl %ebp, %ebp
testq %rbx, %rbx
je 0x1c938
movq %rbx, %rdi
callq 0x26c21
testq %rax, %rax
setne %al
andb %al, %bpl
cmpb $0x1, %bpl
jne 0x1c938
movq %r14, %rdi
callq 0x1c31a
movq %rax, %r14
movq %rbx, %rdi
callq 0x1c31a
movq %r14, %rdi
movq %rax, %rsi
callq 0x14573
testl %eax, %eax
je 0x1c93f
xorl %eax, %eax
popq %rbx
popq %r14
popq %rbp
retq
movb $0x1, %al
jmp 0x1c93a
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/genome_node.c
// Function: gt_genome_nodes_are_sorted
bool gt_genome_nodes_are_sorted(const GtArray *nodes)
{
  GtUword i;
  gt_assert(nodes);
  for (i = 1; i < gt_array_size(nodes); i++) {
    if (gt_genome_node_compare(gt_array_get(nodes, i-1),
                               gt_array_get(nodes, i)) > 0) {
      return false;
    }
  }
  return true;
}

// Assembly:
pushq %r15
pushq %r14
pushq %r12
pushq %rbx
pushq %rax
testq %rdi, %rdi
je 0x1c9a8
movq %rdi, %rbx
pushq $0x1
popq %rcx
movq %rcx, %r14
movq %rbx, %rdi
callq 0x4b988
movq %rax, %r15
cmpq %rax, %r14
jae 0x1c996
leaq -0x1(%r14), %rsi
movq %rbx, %rdi
callq 0x4b48e
movq %rax, %r12
movq %rbx, %rdi
movq %r14, %rsi
callq 0x4b48e
movq %r12, %rdi
movq %rax, %rsi
callq 0x1c61c
leaq 0x1(%r14), %rcx
testl %eax, %eax
jle 0x1c956
cmpq %r15, %r14
setae %al
addq $0x8, %rsp
popq %rbx
popq %r12
popq %r14
popq %r15
retq
movq 0x111609(%rip), %rax    # 0x12dfb8
movq (%rax), %rdi
leaq 0xad6ad(%rip), %rsi     # 0xca066
leaq 0xb1c73(%rip), %rdx     # 0xce633
leaq 0xb22eb(%rip), %rcx     # 0xcecb2
leaq 0xb1ff2(%rip), %r8      # 0xce9c0
movl $0x19c, %r9d            # imm = 0x19C
xorl %eax, %eax
callq 0xb8c0
callq 0xb300
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/genome_node.c
// Function: gt_genome_node_add_user_data
void gt_genome_node_add_user_data(GtGenomeNode *gn, const char *key, void *data,
                                  GtFree free_func)
{
  GtGenomeNodeUserData *ud, *myud;
  gt_assert(gn && key);
  ud = gt_malloc(sizeof (GtGenomeNodeUserData));
  ud->ptr = data;
  ud->free_func = free_func;
  if (!gn->userdata) {
    gn->userdata = gt_hashmap_new(GT_HASH_STRING, gt_free_func,
                                  userdata_delete);
  }
  gt_assert(gn->userdata != NULL);
  /* remove old data entry first if there is one */
  if ((myud = gt_hashmap_get(gn->userdata, key)) != NULL) {
    gt_hashmap_remove(gn->userdata, key);
  } else {
    gn->userdata_nof_items++;
  }
  gt_hashmap_add(gn->userdata, gt_cstr_dup((char*) key), ud);
}

// Assembly:
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
testq %rdi, %rdi
je 0x1ca92
movq %rsi, %rbx
testq %rsi, %rsi
je 0x1ca92
movq %rcx, %r12
movq %rdx, %r13
movq %rdi, %r14
leaq 0xb1fb2(%rip), %rsi     # 0xce9c0
pushq $0x10
popq %rdi
movl $0x1ab, %edx            # imm = 0x1AB
callq 0xccb0
movq %rax, %r15
movq %r13, (%rax)
movq %r12, 0x8(%rax)
movq 0x10(%r14), %rdi
testq %rdi, %rdi
jne 0x1ca50
leaq -0xf6a6(%rip), %rsi     # 0xd38f
leaq 0xbc(%rip), %rdx        # 0x1caf8
pushq $0x1
popq %rdi
callq 0x55da4
movq %rax, %rdi
movq %rax, 0x10(%r14)
testq %rax, %rax
je 0x1cac0
movq %rbx, %rsi
callq 0x55ef6
testq %rax, %rax
je 0x1ca6b
movq 0x10(%r14), %rdi
movq %rbx, %rsi
callq 0x55f6f
jmp 0x1ca6f
incl 0x28(%r14)
movq 0x10(%r14), %r14
movq %rbx, %rdi
callq 0x4f8ae
movq %r14, %rdi
movq %rax, %rsi
movq %r15, %rdx
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
jmp 0x55f31
movq 0x11151f(%rip), %rax    # 0x12dfb8
movq (%rax), %rdi
leaq 0xad5c3(%rip), %rsi     # 0xca066
leaq 0xb2223(%rip), %rdx     # 0xceccd
leaq 0xb2226(%rip), %rcx     # 0xcecd7
leaq 0xb1f08(%rip), %r8      # 0xce9c0
movl $0x1aa, %r9d            # imm = 0x1AA
jmp 0x1caec
movq 0x1114f1(%rip), %rax    # 0x12dfb8
movq (%rax), %rdi
leaq 0xad595(%rip), %rsi     # 0xca066
leaq 0xb221c(%rip), %rdx     # 0xcecf4
leaq 0xb21f8(%rip), %rcx     # 0xcecd7
leaq 0xb1eda(%rip), %r8      # 0xce9c0
movl $0x1b2, %r9d            # imm = 0x1B2
xorl %eax, %eax
callq 0xb8c0
callq 0xb300
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/genome_node.c
// Function: userdata_delete
static void userdata_delete(void *data)
{
  GtGenomeNodeUserData *ud;
  if (!data) return;
  ud = (GtGenomeNodeUserData*) data;
  if (ud->free_func)
    ud->free_func(ud->ptr);
  ud->free_func = ud->ptr = NULL;
  gt_free(ud);
}

// Assembly:
testq %rdi, %rdi
je 0x1cb28
pushq %rbx
movq %rdi, %rbx
movq 0x8(%rdi), %rax
testq %rax, %rax
je 0x1cb0f
movq (%rbx), %rdi
callq *%rax
xorps %xmm0, %xmm0
movups %xmm0, (%rbx)
leaq 0xb1ea4(%rip), %rsi     # 0xce9c0
pushq $0x52
popq %rdx
movq %rbx, %rdi
popq %rbx
jmp 0xd249
retq
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/genome_node.c
// Function: gt_genome_node_get_user_data
void* gt_genome_node_get_user_data(const GtGenomeNode *gn, const char *key)
{
  GtGenomeNodeUserData *ud;
  gt_assert(gn && key);
  if (!gn->userdata)
    return NULL;
  ud = (GtGenomeNodeUserData*) gt_hashmap_get(gn->userdata, key);
  return (ud ? ud->ptr : NULL);
}

// Assembly:
pushq %rax
testq %rdi, %rdi
je 0x1cb50
testq %rsi, %rsi
je 0x1cb50
movq 0x10(%rdi), %rdi
testq %rdi, %rdi
je 0x1cb4c
callq 0x55ef6
testq %rax, %rax
je 0x1cb4c
movq (%rax), %rax
jmp 0x1cb4e
xorl %eax, %eax
popq %rcx
retq
movq 0x111461(%rip), %rax    # 0x12dfb8
movq (%rax), %rdi
leaq 0xad505(%rip), %rsi     # 0xca066
leaq 0xb2165(%rip), %rdx     # 0xceccd
leaq 0xb219a(%rip), %rcx     # 0xced09
leaq 0xb1e4a(%rip), %r8      # 0xce9c0
movl $0x1bf, %r9d            # imm = 0x1BF
xorl %eax, %eax
callq 0xb8c0
callq 0xb300
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/genome_node.c
// Function: gt_genome_node_release_user_data
void gt_genome_node_release_user_data(GtGenomeNode *gn, const char *key)
{
  GtGenomeNodeUserData *ud;
  gt_assert(gn && key);
  if (!gn->userdata)
    return;
  if ((ud = (GtGenomeNodeUserData*) gt_hashmap_get(gn->userdata, key))) {
    gt_hashmap_remove(gn->userdata, (char*) key);
    if (--gn->userdata_nof_items == 0) {
      gt_hashmap_delete(gn->userdata);
      gn->userdata = NULL;
    }
  }
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
testq %rdi, %rdi
je 0x1cbd9
movq %rsi, %r14
testq %rsi, %rsi
je 0x1cbd9
movq %rdi, %rbx
movq 0x10(%rdi), %rdi
testq %rdi, %rdi
je 0x1cbd1
movq %r14, %rsi
callq 0x55ef6
testq %rax, %rax
je 0x1cbd1
movq 0x10(%rbx), %rdi
movq %r14, %rsi
callq 0x55f6f
decl 0x28(%rbx)
jne 0x1cbd1
movq 0x10(%rbx), %rdi
callq 0x563a7
andq $0x0, 0x10(%rbx)
addq $0x8, %rsp
popq %rbx
popq %r14
retq
movq 0x1113d8(%rip), %rax    # 0x12dfb8
movq (%rax), %rdi
leaq 0xad47c(%rip), %rsi     # 0xca066
leaq 0xb20dc(%rip), %rdx     # 0xceccd
leaq 0xb212e(%rip), %rcx     # 0xced26
leaq 0xb1dc1(%rip), %r8      # 0xce9c0
movl $0x1c9, %r9d            # imm = 0x1C9
xorl %eax, %eax
callq 0xb8c0
callq 0xb300
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/genome_node.c
// Function: gt_genome_node_delete
void gt_genome_node_delete(GtGenomeNode *gn)
{
  if (!gn) return;
  gt_rwlock_wrlock(gn->lock);
  if (gn->reference_count) {
    gn->reference_count--;
    gt_rwlock_unlock(gn->lock);
    return;
  }
  gt_assert(gn->c_class);
  if (gn->c_class->free)
    gn->c_class->free(gn);
  gt_str_delete(gn->filename);
  if (gn->userdata)
    gt_hashmap_delete(gn->userdata);
  gt_rwlock_unlock(gn->lock);
#ifdef GT_THREADS_ENABLED
  gt_rwlock_delete(gn->lock);
#endif
  gt_free(gn);
}

// Assembly:
pushq %rbx
testq %rdi, %rdi
je 0x1d20b
movq %rdi, %rbx
movq 0x18(%rdi), %rdi
callq 0x15e99
movl 0x24(%rbx), %eax
testl %eax, %eax
je 0x1d20d
decl %eax
movl %eax, 0x24(%rbx)
movq 0x18(%rbx), %rdi
popq %rbx
jmp 0x15f0a
popq %rbx
retq
movq (%rbx), %rax
testq %rax, %rax
je 0x1d261
movq 0x8(%rax), %rax
testq %rax, %rax
je 0x1d223
movq %rbx, %rdi
callq *%rax
movq 0x8(%rbx), %rdi
callq 0x152db
movq 0x10(%rbx), %rdi
testq %rdi, %rdi
je 0x1d23a
callq 0x563a7
movq 0x18(%rbx), %rdi
callq 0x15f0a
movq 0x18(%rbx), %rdi
callq 0x15dd5
leaq 0xb176d(%rip), %rsi     # 0xce9c0
movq %rbx, %rdi
movl $0x21e, %edx            # imm = 0x21E
popq %rbx
jmp 0xd249
movq 0x110d50(%rip), %rax    # 0x12dfb8
movq (%rax), %rdi
leaq 0xacdf4(%rip), %rsi     # 0xca066
leaq 0xb1871(%rip), %rdx     # 0xceaea
leaq 0xb1c8d(%rip), %rcx     # 0xcef0d
leaq 0xb1739(%rip), %r8      # 0xce9c0
movl $0x214, %r9d            # imm = 0x214
xorl %eax, %eax
callq 0xb8c0
callq 0xb300
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/gff3_in_stream.c
// Function: gt_gff3_in_stream_class
const GtNodeStreamClass* gt_gff3_in_stream_class(void)
{
  static const GtNodeStreamClass *nsc = NULL;
  gt_class_alloc_lock_enter();
  if (!nsc) {
    nsc = gt_node_stream_class_new(sizeof (GtGFF3InStream),
                                   gff3_in_stream_free,
                                   gff3_in_stream_next);
  }
  gt_class_alloc_lock_leave();
  return nsc;
}

// Assembly:
pushq %rax
callq 0x4f21f
cmpq $0x0, 0x1126b2(%rip)    # 0x12fb30
jne 0x1d49d
leaq 0x24(%rip), %rsi        # 0x1d4ab
leaq 0x62(%rip), %rdx        # 0x1d4f0
pushq $0x40
popq %rdi
callq 0x25a78
movq %rax, 0x112693(%rip)    # 0x12fb30
callq 0x4f266
movq 0x112687(%rip), %rax    # 0x12fb30
popq %rcx
retq
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/gff3_in_stream.c
// Function: gff3_in_stream_free
static void gff3_in_stream_free(GtNodeStream *ns)
{
  GtGFF3InStream *gff3_in_stream = gff3_in_stream_cast(ns);
  gt_node_stream_delete(gff3_in_stream->cds_check_stream);
  gt_node_stream_delete(gff3_in_stream->add_ids_stream);
  gt_node_stream_delete(gff3_in_stream->gff3_in_stream_plain);
  gt_node_stream_delete(gff3_in_stream->fix_region_stream);
  gt_node_stream_delete(gff3_in_stream->multi_sanitize_stream);
}

// Assembly:
pushq %rbx
movq %rdi, %rbx
callq 0x1d470
movq %rax, %rdi
movq %rbx, %rsi
callq 0x25ec1
movq %rax, %rbx
movq 0x20(%rax), %rdi
callq 0x25bbb
movq 0x18(%rbx), %rdi
callq 0x25bbb
movq 0x10(%rbx), %rdi
callq 0x25bbb
movq 0x28(%rbx), %rdi
callq 0x25bbb
movq 0x38(%rbx), %rdi
popq %rbx
jmp 0x25bbb
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/gff3_in_stream.c
// Function: gff3_in_stream_next
static int gff3_in_stream_next(GtNodeStream *ns, GtGenomeNode **gn,
                               GtError *err)
{
  GtGFF3InStream *is;
  gt_error_check(err);
  is = gff3_in_stream_cast(ns);
  return gt_node_stream_next(is->last_stream, gn, err);
}

// Assembly:
pushq %r15
pushq %r14
pushq %rbx
movq %rdx, %rbx
movq %rsi, %r14
movq %rdi, %r15
testq %rdx, %rdx
je 0x1d50f
movq %rbx, %rdi
callq 0xc103
testb %al, %al
jne 0x1d533
callq 0x1d470
movq %rax, %rdi
movq %r15, %rsi
callq 0x25ec1
movq 0x30(%rax), %rdi
movq %r14, %rsi
movq %rbx, %rdx
popq %rbx
popq %r14
popq %r15
jmp 0x25c62
movq 0x110a7e(%rip), %rax    # 0x12dfb8
movq (%rax), %rdi
leaq 0xacb22(%rip), %rsi     # 0xca066
leaq 0xad10e(%rip), %rdx     # 0xca659
leaq 0xb1bd0(%rip), %rcx     # 0xcf122
leaq 0xb1a38(%rip), %r8      # 0xcef91
pushq $0x2d
popq %r9
xorl %eax, %eax
callq 0xb8c0
callq 0xb300
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/gff3_in_stream.c
// Function: gt_gff3_in_stream_set_type_checker
void gt_gff3_in_stream_set_type_checker(GtNodeStream *ns,
                                        GtTypeChecker *type_checker)
{
  GtGFF3InStream *is = gff3_in_stream_cast(ns);
  gt_assert(is);
  gt_gff3_in_stream_plain_set_type_checker(is->gff3_in_stream_plain,
                                           type_checker);
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
movq %rsi, %rbx
movq %rdi, %r14
callq 0x1d470
movq %rax, %rdi
movq %r14, %rsi
callq 0x25ec1
testq %rax, %rax
je 0x1d625
movq 0x10(%rax), %rdi
movq %rbx, %rsi
addq $0x8, %rsp
popq %rbx
popq %r14
jmp 0x1e0ba
movq 0x11098c(%rip), %rax    # 0x12dfb8
movq (%rax), %rdi
leaq 0xaca30(%rip), %rsi     # 0xca066
leaq 0xcd64e(%rip), %rdx     # 0xeac8b
leaq 0xb198f(%rip), %rcx     # 0xcefd3
leaq 0xb1946(%rip), %r8      # 0xcef91
pushq $0x5b
popq %r9
xorl %eax, %eax
callq 0xb8c0
callq 0xb300
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/gff3_in_stream.c
// Function: gt_gff3_in_stream_set_xrf_checker
void gt_gff3_in_stream_set_xrf_checker(GtNodeStream *ns,
                                       GtXRFChecker *xrf_checker)
{
  GtGFF3InStream *is = gff3_in_stream_cast(ns);
  gt_assert(is);
  gt_gff3_in_stream_plain_set_xrf_checker(is->gff3_in_stream_plain,
                                          xrf_checker);
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
movq %rsi, %rbx
movq %rdi, %r14
callq 0x1d470
movq %rax, %rdi
movq %r14, %rsi
callq 0x25ec1
testq %rax, %rax
je 0x1d68d
movq 0x10(%rax), %rdi
movq %rbx, %rsi
addq $0x8, %rsp
popq %rbx
popq %r14
jmp 0x1e124
movq 0x110924(%rip), %rax    # 0x12dfb8
movq (%rax), %rdi
leaq 0xac9c8(%rip), %rsi     # 0xca066
leaq 0xcd5e6(%rip), %rdx     # 0xeac8b
leaq 0xb194a(%rip), %rcx     # 0xceff6
leaq 0xb18de(%rip), %r8      # 0xcef91
pushq $0x64
popq %r9
xorl %eax, %eax
callq 0xb8c0
callq 0xb300
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/gff3_in_stream.c
// Function: gt_gff3_in_stream_set_offsetfile
int gt_gff3_in_stream_set_offsetfile(GtNodeStream *ns, GtStr *offsetfile,
                                     GtError *err)
{
  GtGFF3InStream *is = gff3_in_stream_cast(ns);
  gt_assert(is);
  return gt_gff3_in_stream_plain_set_offsetfile(is->gff3_in_stream_plain,
                                                offsetfile, err);
}

// Assembly:
pushq %r15
pushq %r14
pushq %rbx
movq %rdx, %rbx
movq %rsi, %r14
movq %rdi, %r15
callq 0x1d470
movq %rax, %rdi
movq %r15, %rsi
callq 0x25ec1
testq %rax, %rax
je 0x1d7bb
movq 0x10(%rax), %rdi
movq %r14, %rsi
movq %rbx, %rdx
popq %rbx
popq %r14
popq %r15
jmp 0x1e253
movq 0x1107f6(%rip), %rax    # 0x12dfb8
movq (%rax), %rdi
leaq 0xac89a(%rip), %rsi     # 0xca066
leaq 0xcd4b8(%rip), %rdx     # 0xeac8b
leaq 0xb187c(%rip), %rcx     # 0xcf056
leaq 0xb17b0(%rip), %r8      # 0xcef91
pushq $0x7b
popq %r9
xorl %eax, %eax
callq 0xb8c0
callq 0xb300
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/gff3_in_stream.c
// Function: gt_gff3_in_stream_enable_tidy_mode
void gt_gff3_in_stream_enable_tidy_mode(GtGFF3InStream *is)
{
  gt_assert(is);
  gt_gff3_in_stream_plain_enable_tidy_mode(is->gff3_in_stream_plain);
  gt_cds_check_stream_enable_tidy_mode((GtCDSCheckStream*)
                                       is->cds_check_stream);
}

// Assembly:
pushq %rbx
testq %rdi, %rdi
je 0x1d8b4
movq %rdi, %rbx
movq 0x10(%rdi), %rdi
callq 0x1e31d
movq 0x20(%rbx), %rdi
popq %rbx
jmp 0x63627
movq 0x1106fd(%rip), %rax    # 0x12dfb8
movq (%rax), %rdi
leaq 0xac7a1(%rip), %rsi     # 0xca066
leaq 0xcd3bf(%rip), %rdx     # 0xeac8b
leaq 0xb1804(%rip), %rcx     # 0xcf0d7
leaq 0xb16b7(%rip), %r8      # 0xcef91
movl $0x8f, %r9d
xorl %eax, %eax
callq 0xb8c0
callq 0xb300
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/gff3_in_stream.c
// Function: gt_gff3_in_stream_fix_region_boundaries
void gt_gff3_in_stream_fix_region_boundaries(GtGFF3InStream *is)
{
  gt_assert(is);
  gt_gff3_in_stream_plain_do_not_check_region_boundaries(
                               (GtGFF3InStreamPlain*) is->gff3_in_stream_plain);
  is->last_stream = is->fix_region_stream =
             gt_tidy_region_node_stream_new(is->last_stream);
}

// Assembly:
pushq %rbx
testq %rdi, %rdi
je 0x1d911
movq %rdi, %rbx
movq 0x10(%rdi), %rdi
callq 0x1e030
movq 0x30(%rbx), %rdi
callq 0x28cac
movq %rax, 0x28(%rbx)
movq %rax, 0x30(%rbx)
popq %rbx
retq
movq 0x1106a0(%rip), %rax    # 0x12dfb8
movq (%rax), %rdi
leaq 0xac744(%rip), %rsi     # 0xca066
leaq 0xcd362(%rip), %rdx     # 0xeac8b
leaq 0xb17ca(%rip), %rcx     # 0xcf0fa
leaq 0xb165a(%rip), %r8      # 0xcef91
movl $0x97, %r9d
xorl %eax, %eax
callq 0xb8c0
callq 0xb300
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/gff3_in_stream.c
// Function: gt_gff3_in_stream_new_unsorted
GtNodeStream* gt_gff3_in_stream_new_unsorted(int num_of_files,
                                             const char **filenames)
{
  GtNodeStream *ns = gt_node_stream_create(gt_gff3_in_stream_class(), false);
  GtGFF3InStream *is = gff3_in_stream_cast(ns);
  is->fix_region_stream = NULL;
  is->last_stream = is->gff3_in_stream_plain =
                  gt_gff3_in_stream_plain_new_unsorted(num_of_files, filenames);
  gt_gff3_in_stream_plain_check_region_boundaries(
                               (GtGFF3InStreamPlain*) is->gff3_in_stream_plain);
  is->last_stream = is->add_ids_stream = gt_add_ids_stream_new(is->last_stream);
  is->last_stream = is->multi_sanitize_stream =
       gt_visitor_stream_new(is->last_stream, gt_multi_sanitizer_visitor_new());
  is->last_stream = is->cds_check_stream =
                                       gt_cds_check_stream_new(is->last_stream);
  return ns;
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %rbx
pushq %rax
movq %rsi, %r15
movl %edi, %ebp
callq 0x1d470
movq %rax, %rdi
xorl %esi, %esi
callq 0x25adf
movq %rax, %rbx
callq 0x1d470
movq %rax, %rdi
movq %rbx, %rsi
callq 0x25ec1
movq %rax, %r14
andq $0x0, 0x28(%rax)
movl %ebp, %edi
movq %r15, %rsi
callq 0x1e378
movq %rax, 0x10(%r14)
movq %rax, 0x30(%r14)
movq %rax, %rdi
callq 0x1dfe9
movq 0x30(%r14), %rdi
callq 0x62b45
movq %rax, %r15
movq %rax, 0x18(%r14)
movq %rax, 0x30(%r14)
callq 0x259bd
movq %r15, %rdi
movq %rax, %rsi
callq 0x296d9
movq %rax, 0x38(%r14)
movq %rax, 0x30(%r14)
movq %rax, %rdi
callq 0x635dc
movq %rax, 0x20(%r14)
movq %rax, 0x30(%r14)
movq %rbx, %rax
addq $0x8, %rsp
popq %rbx
popq %r14
popq %r15
popq %rbp
retq
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/gff3_in_stream.c
// Function: gt_gff3_in_stream_new_sorted
GtNodeStream* gt_gff3_in_stream_new_sorted(const char *filename)
{
  GtNodeStream *ns = gt_node_stream_create(gt_gff3_in_stream_class(), true);
  GtGFF3InStream *is = gff3_in_stream_cast(ns);
  is->fix_region_stream = NULL;
  is->last_stream = is->gff3_in_stream_plain =
                                   gt_gff3_in_stream_plain_new_sorted(filename);
  gt_gff3_in_stream_plain_check_region_boundaries(
                               (GtGFF3InStreamPlain*) is->gff3_in_stream_plain);
  is->last_stream = is->add_ids_stream = gt_add_ids_stream_new(is->last_stream);
  is->last_stream = is->multi_sanitize_stream =
       gt_visitor_stream_new(is->last_stream, gt_multi_sanitizer_visitor_new());
  is->last_stream = is->cds_check_stream =
                                       gt_cds_check_stream_new(is->last_stream);
  return ns;
}

// Assembly:
pushq %r15
pushq %r14
pushq %rbx
movq %rdi, %r15
callq 0x1d470
pushq $0x1
popq %rsi
movq %rax, %rdi
callq 0x25adf
movq %rax, %rbx
callq 0x1d470
movq %rax, %rdi
movq %rbx, %rsi
callq 0x25ec1
movq %rax, %r14
andq $0x0, 0x28(%rax)
movq %r15, %rdi
callq 0x1e434
movq %rax, 0x10(%r14)
movq %rax, 0x30(%r14)
movq %rax, %rdi
callq 0x1dfe9
movq 0x30(%r14), %rdi
callq 0x62b45
movq %rax, %r15
movq %rax, 0x18(%r14)
movq %rax, 0x30(%r14)
callq 0x259bd
movq %r15, %rdi
movq %rax, %rsi
callq 0x296d9
movq %rax, 0x38(%r14)
movq %rax, 0x30(%r14)
movq %rax, %rdi
callq 0x635dc
movq %rax, 0x20(%r14)
movq %rax, 0x30(%r14)
movq %rbx, %rax
popq %rbx
popq %r14
popq %r15
retq
nop
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/gff3_in_stream_plain.c
// Function: gt_gff3_in_stream_plain_class
const GtNodeStreamClass* gt_gff3_in_stream_plain_class(void)
{
  static const GtNodeStreamClass *nsc = NULL;
  gt_class_alloc_lock_enter();
  if (!nsc) {
    nsc = gt_node_stream_class_new(sizeof (GtGFF3InStreamPlain),
                                   gff3_in_stream_plain_free,
                                   gff3_in_stream_plain_next);
  }
  gt_class_alloc_lock_leave();
  return nsc;
}

// Assembly:
pushq %rax
callq 0x4f21f
cmpq $0x0, 0x1120b6(%rip)    # 0x12fb38
jne 0x1daa1
leaq 0x24(%rip), %rsi        # 0x1daaf
leaq 0x88(%rip), %rdx        # 0x1db1a
pushq $0x58
popq %rdi
callq 0x25a78
movq %rax, 0x112097(%rip)    # 0x12fb38
callq 0x4f266
movq 0x11208b(%rip), %rax    # 0x12fb38
popq %rcx
retq
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/gff3_in_stream_plain.c
// Function: gff3_in_stream_plain_free
static void gff3_in_stream_plain_free(GtNodeStream *ns)
{
  GtGFF3InStreamPlain *gff3_in_stream_plain = gff3_in_stream_plain_cast(ns);
  gt_str_array_delete(gff3_in_stream_plain->files);
  gt_str_delete(gff3_in_stream_plain->stdinstr);
  while (gt_queue_size(gff3_in_stream_plain->genome_node_buffer)) {
    gt_genome_node_delete(gt_queue_get(gff3_in_stream_plain
                                       ->genome_node_buffer));
  }
  gt_queue_delete(gff3_in_stream_plain->genome_node_buffer);
  gt_gff3_parser_delete(gff3_in_stream_plain->gff3_parser);
  gt_cstr_table_delete(gff3_in_stream_plain->used_types);
  gt_file_delete(gff3_in_stream_plain->fpin);
}

// Assembly:
pushq %rbx
movq %rdi, %rbx
callq 0x1da74
movq %rax, %rdi
movq %rbx, %rsi
callq 0x25ec1
movq %rax, %rbx
movq 0x18(%rax), %rdi
callq 0x1583a
movq 0x20(%rbx), %rdi
callq 0x152db
movq 0x40(%rbx), %rdi
callq 0x5b20f
movq 0x40(%rbx), %rdi
testq %rax, %rax
je 0x1daf9
callq 0x5b195
movq %rax, %rdi
callq 0x1d1e3
jmp 0x1dad8
callq 0x5b761
movq 0x48(%rbx), %rdi
callq 0x22694
movq 0x50(%rbx), %rdi
callq 0x5055b
movq 0x30(%rbx), %rdi
popq %rbx
jmp 0x548ae
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/gff3_in_stream_plain.c
// Function: gt_gff3_in_stream_plain_new_unsorted
GtNodeStream* gt_gff3_in_stream_plain_new_unsorted(int num_of_files,
                                                   const char **filenames)
{
  int i;
  GtStrArray *files = gt_str_array_new();
  for (i = 0; i < num_of_files; i++)
    gt_str_array_add_cstr(files, filenames[i]);
  return gff3_in_stream_plain_new(files, false);
}

// Assembly:
pushq %r15
pushq %r14
pushq %r12
pushq %rbx
pushq %rax
movq %rsi, %rbx
movl %edi, %r14d
callq 0x1532c
movq %rax, %r15
xorl %r12d, %r12d
testl %r14d, %r14d
cmovlel %r12d, %r14d
cmpq %r12, %r14
je 0x1e3ae
movq (%rbx,%r12,8), %rsi
movq %r15, %rdi
callq 0x15407
incq %r12
jmp 0x1e398
movq %r15, %rdi
xorl %esi, %esi
addq $0x8, %rsp
popq %rbx
popq %r12
popq %r14
popq %r15
jmp 0x1e3c0
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/gff3_in_stream_plain.c
// Function: gff3_in_stream_plain_new
static GtNodeStream* gff3_in_stream_plain_new(GtStrArray *files,
                                              bool ensure_sorting)
{
  GtNodeStream *ns = gt_node_stream_create(gt_gff3_in_stream_plain_class(),
                                           ensure_sorting);
  GtGFF3InStreamPlain *gff3_in_stream_plain = gff3_in_stream_plain_cast(ns);
  gff3_in_stream_plain->files               = files;
  gff3_in_stream_plain->stdinstr            = gt_str_new_cstr("stdin");
  gff3_in_stream_plain->ensure_sorting      = ensure_sorting;
  gff3_in_stream_plain->genome_node_buffer  = gt_queue_new();
  gff3_in_stream_plain->gff3_parser         = gt_gff3_parser_new(NULL);
  gff3_in_stream_plain->used_types          = gt_cstr_table_new();
  return ns;
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %rbx
pushq %rax
movl %esi, %ebp
movq %rdi, %r14
callq 0x1da74
movq %rax, %rdi
movl %ebp, %esi
callq 0x25adf
movq %rax, %rbx
callq 0x1da74
movq %rax, %rdi
movq %rbx, %rsi
callq 0x25ec1
movq %rax, %r15
movq %r14, 0x18(%rax)
leaq 0xb8798(%rip), %rdi     # 0xd6b94
callq 0x13da9
movq %rax, 0x20(%r15)
movb %bpl, 0x28(%r15)
callq 0x5b040
movq %rax, 0x40(%r15)
xorl %edi, %edi
callq 0x1e594
movq %rax, 0x48(%r15)
callq 0x5005c
movq %rax, 0x50(%r15)
movq %rbx, %rax
addq $0x8, %rsp
popq %rbx
popq %r14
popq %r15
popq %rbp
retq
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/gff3_in_stream_plain.c
// Function: gt_gff3_in_stream_plain_new_sorted
GtNodeStream* gt_gff3_in_stream_plain_new_sorted(const char *filename)
{
  GtStrArray *files = gt_str_array_new();
  if (filename)
    gt_str_array_add_cstr(files, filename);
  return gff3_in_stream_plain_new(files, true);
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
movq %rdi, %r14
callq 0x1532c
movq %rax, %rbx
testq %r14, %r14
je 0x1e453
movq %rbx, %rdi
movq %r14, %rsi
callq 0x15407
pushq $0x1
popq %rsi
movq %rbx, %rdi
addq $0x8, %rsp
popq %rbx
popq %r14
jmp 0x1e3c0
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/gff3_in_stream_plain.c
// Function: buffer_is_sorted
static int buffer_is_sorted(void **elem, void *info, GtError *err)
{
  GtGenomeNode *current_node, **last_node;

  gt_error_check(err);
  gt_assert(elem && info);

  current_node = *(GtGenomeNode**) elem,
  last_node = info;

  if (*last_node && gt_genome_node_compare(last_node, &current_node) > 0) {
    gt_assert(*last_node);
    gt_error_set(err, "the file %s is not sorted (example: line %u and %u)",
              gt_genome_node_get_filename(*last_node),
              gt_genome_node_get_line_number(*last_node),
              gt_genome_node_get_line_number(current_node));
    return -1;
  }
  else
    *last_node = current_node;
  return 0;
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %rbx
pushq %rax
movq %rdx, %rbx
movq %rsi, %r14
movq %rdi, %r15
testq %rdx, %rdx
je 0x1e48a
movq %rbx, %rdi
callq 0xc103
testb %al, %al
jne 0x1e533
testq %r15, %r15
je 0x1e509
testq %r14, %r14
je 0x1e509
movq (%r15), %rax
movq %rax, (%rsp)
cmpq $0x0, (%r14)
je 0x1e4f9
movq %rsp, %rsi
movq %r14, %rdi
callq 0x1c61c
testl %eax, %eax
jle 0x1e4f5
movq (%r14), %rdi
testq %rdi, %rdi
je 0x1e55d
callq 0x1c285
movq %rax, %r15
movq (%r14), %rdi
callq 0x1c2d8
movl %eax, %ebp
movq (%rsp), %rdi
callq 0x1c2d8
leaq 0xb0f7e(%rip), %rsi     # 0xcf45c
movq %rbx, %rdi
movq %r15, %rdx
movl %ebp, %ecx
movl %eax, %r8d
xorl %eax, %eax
callq 0xc007
pushq $-0x1
popq %rax
jmp 0x1e4fe
movq (%rsp), %rax
movq %rax, (%r14)
xorl %eax, %eax
addq $0x8, %rsp
popq %rbx
popq %r14
popq %r15
popq %rbp
retq
movq 0x10faa8(%rip), %rax    # 0x12dfb8
movq (%rax), %rdi
leaq 0xabb4c(%rip), %rsi     # 0xca066
leaq 0xb0f23(%rip), %rdx     # 0xcf444
leaq 0xb0f0b(%rip), %rcx     # 0xcf433
leaq 0xb0c33(%rip), %r8      # 0xcf162
pushq $0x38
jmp 0x1e585
movq 0x10fa7e(%rip), %rax    # 0x12dfb8
movq (%rax), %rdi
leaq 0xabb22(%rip), %rsi     # 0xca066
leaq 0xac10e(%rip), %rdx     # 0xca659
leaq 0xb0ee1(%rip), %rcx     # 0xcf433
leaq 0xb0c09(%rip), %r8      # 0xcf162
pushq $0x37
jmp 0x1e585
movq 0x10fa54(%rip), %rax    # 0x12dfb8
movq (%rax), %rdi
leaq 0xabaf8(%rip), %rsi     # 0xca066
leaq 0xb0edc(%rip), %rdx     # 0xcf451
leaq 0xb0eb7(%rip), %rcx     # 0xcf433
leaq 0xb0bdf(%rip), %r8      # 0xcf162
pushq $0x3e
popq %r9
xorl %eax, %eax
callq 0xb8c0
callq 0xb300
nop
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/gff3_parser.c
// Function: gt_gff3_parser_new
GtGFF3Parser* gt_gff3_parser_new(GtTypeChecker *type_checker)
{
  GtGFF3Parser *parser;
  parser = gt_calloc(1, sizeof *parser);
  parser->feature_info = gt_feature_info_new();
  parser->seqid_to_ssr_mapping = gt_hashmap_new(GT_HASH_STRING, NULL,
                                        (GtFree) simple_sequence_region_delete);
  parser->source_to_str_mapping = gt_hashmap_new(GT_HASH_STRING, NULL,
                                                 (GtFree) gt_str_delete);
  parser->offset = GT_UNDEF_WORD;
  parser->orphanage = gt_orphanage_new();
  parser->type_checker = type_checker ? gt_type_checker_ref(type_checker)
                                      : NULL;
  parser->xrf_checker = NULL;
  return parser;
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %rbx
pushq %rax
movq %rdi, %rbx
leaq 0xb0eeb(%rip), %rdx     # 0xcf490
pushq $0x1
popq %rdi
pushq $0x58
popq %rsi
pushq $0x66
popq %rcx
callq 0xce9a
movq %rax, %r14
callq 0x645ac
movq %rax, (%r14)
leaq 0x65(%rip), %rdx        # 0x1e62a
xorl %r15d, %r15d
pushq $0x1
popq %rbp
movl %ebp, %edi
xorl %esi, %esi
callq 0x55da4
movq %rax, 0x8(%r14)
leaq -0x9304(%rip), %rdx     # 0x152db
movl %ebp, %edi
xorl %esi, %esi
callq 0x55da4
movq %rax, 0x10(%r14)
movabsq $-0x8000000000000000, %rax # imm = 0x8000000000000000
movq %rax, 0x28(%r14)
callq 0x26528
movq %rax, 0x38(%r14)
testq %rbx, %rbx
je 0x1e613
movq %rbx, %rdi
callq 0x29326
movq %rax, %r15
movq %r15, 0x40(%r14)
andq $0x0, 0x48(%r14)
movq %r14, %rax
addq $0x8, %rsp
popq %rbx
popq %r14
popq %r15
popq %rbp
retq
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/gff3_parser.c
// Function: gt_gff3_parser_set_offsetfile
int gt_gff3_parser_set_offsetfile(GtGFF3Parser *parser, GtStr *offsetfile,
                                  GtError *err)
{
  gt_error_check(err);
  gt_assert(parser);
  gt_assert(parser->offset == GT_UNDEF_WORD);
  parser->offset_mapping = gt_mapping_new(offsetfile, "offsets",
                                          GT_MAPPINGTYPE_INTEGER, err);
  if (parser->offset_mapping)
    return 0;
  return -1;
}

// Assembly:
pushq %r15
pushq %r14
pushq %r12
pushq %rbx
pushq %rax
movq %rdx, %r14
movq %rsi, %r15
movq %rdi, %rbx
testq %rdx, %rdx
je 0x1e885
movq %r14, %rdi
callq 0xc103
testb %al, %al
jne 0x1e91e
testq %rbx, %rbx
je 0x1e8c2
xorl %r12d, %r12d
cmpq 0x28(%rbx), %r12
jno 0x1e8f0
leaq 0xb0d65(%rip), %rsi     # 0xcf5ff
pushq $0x1
popq %rdx
movq %r15, %rdi
movq %r14, %rcx
callq 0x24c30
movq %rax, 0x30(%rbx)
cmpq $0x1, %rax
sbbl %r12d, %r12d
movl %r12d, %eax
addq $0x8, %rsp
popq %rbx
popq %r12
popq %r14
popq %r15
retq
movq 0x10f6ef(%rip), %rax    # 0x12dfb8
movq (%rax), %rdi
leaq 0xab793(%rip), %rsi     # 0xca066
leaq 0xb207a(%rip), %rdx     # 0xd0954
leaq 0xb0ce0(%rip), %rcx     # 0xcf5c1
leaq 0xb0ba8(%rip), %r8      # 0xcf490
movl $0xa1, %r9d
jmp 0x1e94a
movq 0x10f6c1(%rip), %rax    # 0x12dfb8
movq (%rax), %rdi
leaq 0xab765(%rip), %rsi     # 0xca066
leaq 0xb0cd7(%rip), %rdx     # 0xcf5df
leaq 0xb0cb2(%rip), %rcx     # 0xcf5c1
leaq 0xb0b7a(%rip), %r8      # 0xcf490
movl $0xa2, %r9d
jmp 0x1e94a
movq 0x10f693(%rip), %rax    # 0x12dfb8
movq (%rax), %rdi
leaq 0xab737(%rip), %rsi     # 0xca066
leaq 0xabd23(%rip), %rdx     # 0xca659
leaq 0xb0c84(%rip), %rcx     # 0xcf5c1
leaq 0xb0b4c(%rip), %r8      # 0xcf490
movl $0xa0, %r9d
xorl %eax, %eax
callq 0xb8c0
callq 0xb300