// File: /workspace/github_cpp_makefile_star2_O1/millanek[P]evo/evo_shared_variation.cpp
// Function: parseSharedVarOptions(int, char**)
void parseSharedVarOptions(int argc, char** argv) {
    bool die = false;
    for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;)
    {
        std::istringstream arg(optarg != NULL ? optarg : "");
        switch (c)
        {
            case 'n': arg >> opt::runName; break;
            case 'l': opt::getLocsFor = split(arg.str(), ','); break;
            case '?': die = true; break;
            case 'h': std::cout << SHAREDVAR_USAGE_MESSAGE;
                exit(EXIT_SUCCESS);
        }
    }
    if (argc - optind < 2) {
        std::cerr << "missing arguments\n";
        die = true;
    }
    else if (argc - optind > 2)
    {
        std::cerr << "too many arguments\n";
        die = true;
    }
    
    if (die) {
        std::cout << "\n" << SHAREDVAR_USAGE_MESSAGE;
        exit(EXIT_FAILURE);
    }
    
    // Parse the input filenames
    opt::vcfFile = argv[optind++];
    opt::setsFile = argv[optind++];
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
subq $0x1e8, %rsp            # imm = 0x1E8
movl %edi, %ebp
leaq 0x5ec7e(%rip), %rdx     # 0xde373
leaq 0x8a484(%rip), %rcx     # 0x109b80
movq $0x0, (%rsp)
movq %rsi, 0x8(%rsp)
xorl %r8d, %r8d
callq 0x8770
movl %eax, %r15d
shll $0x18, %r15d
cmpl $0xff000000, %r15d      # imm = 0xFF000000
je 0x7f8c9
leaq 0x20(%rsp), %rbx
movq $0x0, (%rsp)
leaq 0x10(%rsp), %r12
leaq 0x68(%rsp), %r13
movq 0x8b83d(%rip), %rax     # 0x10af80
movq (%rax), %r14
testq %r14, %r14
leaq 0x5252f(%rip), %rax     # 0xd1c7f
cmoveq %rax, %r14
movq %rbx, 0x10(%rsp)
movq %r14, %rdi
callq 0x81f0
leaq (%rax,%r14), %rdx
movq %r12, %rdi
movq %r14, %rsi
callq 0x28952
movq %r13, %rdi
movq %r12, %rsi
movl $0x8, %edx
callq 0x87b0
movq 0x10(%rsp), %rdi
cmpq %rbx, %rdi
je 0x7f797
movq 0x20(%rsp), %rsi
incq %rsi
callq 0x8480
sarl $0x18, %r15d
cmpl $0x6b, %r15d
jle 0x7f7c5
cmpl $0x6c, %r15d
je 0x7f7da
cmpl $0x6e, %r15d
jne 0x7f87c
movq %r13, %rdi
leaq 0x8cf9d(%rip), %rsi     # 0x10c758
callq 0x8560
jmp 0x7f87c
cmpl $0x3f, %r15d
jne 0x7f872
movb $0x1, %al
movq %rax, (%rsp)
jmp 0x7f87c
movq %r12, %rdi
leaq 0x78(%rsp), %rsi
callq 0x8700
leaq 0x50(%rsp), %r14
movq %r14, %rdi
movq %r12, %rsi
movl $0x2c, %edx
callq 0x50624
xorps %xmm0, %xmm0
movaps %xmm0, 0x30(%rsp)
movups 0x8cf35(%rip), %xmm0    # 0x10c740
movq 0x8cf3e(%rip), %rax     # 0x10c750
movups 0x50(%rsp), %xmm1
movups %xmm1, 0x8cf22(%rip)    # 0x10c740
movq 0x60(%rsp), %rcx
movq %rcx, 0x8cf26(%rip)     # 0x10c750
movaps 0x30(%rsp), %xmm1
movaps %xmm0, 0x30(%rsp)
movq %rax, 0x40(%rsp)
movups %xmm1, 0x50(%rsp)
movq $0x0, 0x60(%rsp)
leaq 0x30(%rsp), %rdi
callq 0x3123c
movq %r14, %rdi
callq 0x3123c
movq 0x10(%rsp), %rdi
cmpq %rbx, %rdi
je 0x7f87c
movq 0x20(%rsp), %rsi
incq %rsi
callq 0x8480
jmp 0x7f87c
cmpl $0x68, %r15d
je 0x7f997
movq %r13, %rdi
movq 0x8b712(%rip), %rsi     # 0x10af98
callq 0x8620
leaq 0xe0(%rsp), %rdi
callq 0x8190
movl %ebp, %edi
movq 0x8(%rsp), %rsi
leaq 0x5eacd(%rip), %rdx     # 0xde373
leaq 0x8a2d3(%rip), %rcx     # 0x109b80
xorl %r8d, %r8d
callq 0x8770
movl %eax, %r15d
shll $0x18, %r15d
cmpl $0xff000000, %r15d      # imm = 0xFF000000
jne 0x7f73c
movq 0x8b6f0(%rip), %rbx     # 0x10afc0
subl (%rbx), %ebp
cmpl $0x2, %ebp
jge 0x7f8ec
movq 0x8b70a(%rip), %rdi     # 0x10afe8
leaq 0x4e8cd(%rip), %rsi     # 0xce1b2
movl $0x12, %edx
jmp 0x7f905
movq (%rsp), %rax
je 0x7f90c
movq 0x8b6ef(%rip), %rdi     # 0x10afe8
leaq 0x4e8c5(%rip), %rsi     # 0xce1c5
movl $0x13, %edx
callq 0x84e0
movb $0x1, %al
testb $0x1, %al
jne 0x7f9b1
movslq (%rbx), %rax
leal 0x1(%rax), %ecx
movl %ecx, (%rbx)
movq 0x8(%rsp), %r13
movq (%r13,%rax,8), %r14
movq 0x8cddb(%rip), %r15     # 0x10c708
leaq 0x8cdcc(%rip), %r12     # 0x10c700
movq %r14, %rdi
callq 0x81f0
movq %r12, %rdi
xorl %esi, %esi
movq %r15, %rdx
movq %r14, %rcx
movq %rax, %r8
callq 0x86c0
movslq (%rbx), %rax
leal 0x1(%rax), %ecx
movl %ecx, (%rbx)
movq (%r13,%rax,8), %rbx
movq 0x8cdc5(%rip), %r14     # 0x10c728
leaq 0x8cdb6(%rip), %r15     # 0x10c720
movq %rbx, %rdi
callq 0x81f0
movq %r15, %rdi
xorl %esi, %esi
movq %r14, %rdx
movq %rbx, %rcx
movq %rax, %r8
callq 0x86c0
addq $0x1e8, %rsp            # imm = 0x1E8
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
retq
movq 0x8b61a(%rip), %rdi     # 0x10afb8
leaq 0x5e9e7(%rip), %rsi     # 0xde38c
callq 0x8460
xorl %edi, %edi
callq 0x8530
movq 0x8b600(%rip), %rdi     # 0x10afb8
leaq 0x4ccbe(%rip), %rsi     # 0xcc67d
callq 0x8460
leaq 0x5e9c1(%rip), %rsi     # 0xde38c
movq %rax, %rdi
callq 0x8460
movl $0x1, %edi
callq 0x8530
jmp 0x7f9fd
movq %rax, %r14
movq 0x10(%rsp), %rdi
cmpq %rbx, %rdi
je 0x7fa00
movq 0x20(%rsp), %rsi
incq %rsi
callq 0x8480
jmp 0x7fa00
jmp 0x7f9fd
movq %rax, %r14
movq 0x8b591(%rip), %rsi     # 0x10af98
leaq 0x68(%rsp), %rdi
callq 0x8620
leaq 0xe0(%rsp), %rdi
callq 0x8190
jmp 0x7fa3f
movq %rax, %r14
jmp 0x7fa3f
movq %rax, %r14
movq 0x10(%rsp), %rdi
cmpq %rbx, %rdi
je 0x7fa3f
movq 0x20(%rsp), %rsi
incq %rsi
callq 0x8480
movq %r14, %rdi
callq 0x8840
nop