// File: /workspace/github_cpp_makefile_star2_O3/BenLangmead[P]bowtie/./pat.h
// Function: CFilePatternSource::CFilePatternSource(EList<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char>>, 128> const&, EList<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char>>, 128> const*, int, int)
CFilePatternSource(
		const EList<string>& infiles,
		const EList<string>* qinfiles,
		int trim3 = 0,
	    int trim5 = 0) :
		TrimmingPatternSource( trim3, trim5),
		infiles_(infiles),
		filecur_(0),
		fp_(NULL),
		qfp_(NULL),
		zfp_(NULL),
		is_open_(false),
		first_(true)
	{
		qinfiles_.clear();
		if(qinfiles != NULL) qinfiles_ = *qinfiles;
		assert_gt(infiles.size(), 0);
		errs_.resize(infiles_.size());
		errs_.fill(0, infiles_.size(), false);
		if(qinfiles_.size() > 0 &&
		   qinfiles_.size() != infiles_.size())
		{
			cerr << "Error: Different numbers of input FASTA/quality files ("
			     << infiles_.size() << "/" << qinfiles_.size() << ")" << endl;
			throw 1;
		}
		open(); // open first file in the list
		filecur_++;
	}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
pushq %rax
movq %rdx, %r12
movq %rdi, %r15
xorl %ebp, %ebp
movq %rbp, 0x8(%rdi)
movb $0x0, 0x10(%rdi)
movl %ecx, 0x14(%rdi)
movl %r8d, 0x18(%rdi)
leaq 0x4a06b(%rip), %rax     # 0x69900
addq $0x10, %rax
movq %rax, (%rdi)
leaq 0x20(%rdi), %rbx
movabsq $-0x100000000, %rax     # imm = 0xFFFFFFFF00000000
movq %rax, 0x20(%rdi)
xorps %xmm0, %xmm0
movups %xmm0, 0x28(%rdi)
movq %rbp, 0x38(%rdi)
movq %rbx, %rdi
callq 0x1fa48
leaq 0x40(%r15), %r14
movl %ebp, 0x40(%r15)
movl $0xffffffff, %eax       # imm = 0xFFFFFFFF
movl %eax, 0x44(%r15)
movq %rbp, 0x48(%r15)
movl $0x80, %ecx
movq %rcx, 0x50(%r15)
movl %ebp, 0x60(%r15)
movl %eax, 0x64(%r15)
leaq 0x68(%r15), %r13
movq %rbp, 0x68(%r15)
movq %rcx, 0x70(%r15)
xorps %xmm0, %xmm0
movups %xmm0, 0x78(%r15)
movups %xmm0, 0x88(%r15)
movups %xmm0, 0x91(%r15)
movb $0x1, 0xa1(%r15)
movq %rbp, 0x58(%r15)
testq %r12, %r12
je 0x1f927
movq %r14, %rdi
movq %r12, %rsi
callq 0x1fa48
leaq 0x60(%r15), %rdi
movq 0x38(%r15), %rsi
callq 0x1fad8
movq 0x38(%r15), %rax
testq %rax, %rax
je 0x1f955
xorl %ecx, %ecx
movq (%r13), %rdx
movb $0x0, (%rdx,%rcx)
incq %rcx
cmpq %rcx, %rax
jne 0x1f93f
movq 0x38(%r15), %rax
jmp 0x1f957
xorl %eax, %eax
movq 0x58(%r15), %rcx
testq %rcx, %rcx
je 0x1f965
cmpq %rax, %rcx
jne 0x1f983
movq %r15, %rdi
callq 0x4b2de
incq 0x80(%r15)
addq $0x8, %rsp
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
retq
movq 0x4a666(%rip), %rdi     # 0x69ff0
leaq 0x35a9f(%rip), %rsi     # 0x55430
movl $0x37, %edx
callq 0x9560
movq 0x38(%r15), %rsi
movq 0x4a64a(%rip), %rdi     # 0x69ff0
callq 0x92e0
movq %rax, %r12
leaq 0x33e2d(%rip), %rsi     # 0x537e2
movl $0x1, %edx
movq %rax, %rdi
callq 0x9560
movq 0x58(%r15), %rsi
movq %r12, %rdi
callq 0x92e0
movq %rax, %r15
leaq 0x3691b(%rip), %rsi     # 0x562f3
movl $0x1, %edx
movq %rax, %rdi
callq 0x9560
movq %r15, %rdi
callq 0x91f0
movl $0x4, %edi
callq 0x9200
movl $0x1, (%rax)
movq 0x4a534(%rip), %rsi     # 0x69f38
movq %rax, %rdi
xorl %edx, %edx
callq 0x98f0
movq %rax, %r15
movq (%r13), %rdi
testq %rdi, %rdi
je 0x1fa2f
callq 0x95e0
xorps %xmm0, %xmm0
movups %xmm0, (%r13)
movq $0x0, 0x10(%r13)
movq %r14, %rdi
callq 0x1fc3c
movq %rbx, %rdi
callq 0x1fc3c
movq %r15, %rdi
callq 0x9930
nop