// File: /workspace/github_c_makefile_star2_O0/genometools[P]genometools/src/match/querymatch-align.c
// Function: gt_querymatchoutoptions_extend
void gt_querymatchoutoptions_extend(
                  GtQuerymatchoutoptions *querymatchoutoptions,
                  GtUword errorpercentage,
                  double evalue_threshold,
                  GtUword maxalignedlendifference,
                  GtUword history_size,
                  GtUword perc_mat_history,
                  GtExtendCharAccess a_extend_char_access,
                  GtExtendCharAccess b_extend_char_access,
                  bool cam_generic,
                  bool weakends,
                  GtUword sensitivity,
                  double matchscore_bias,
                  bool always_polished_ends,
                  const GtSeedExtendDisplayFlag *out_display_flag)
{
  if (errorpercentage > 0)
  {
    gt_assert(querymatchoutoptions != NULL);
    querymatchoutoptions->front_trace = front_trace_new();
    querymatchoutoptions->pol_info
      = polishing_info_new_with_bias(weakends ? GT_MAX(errorpercentage,20)
                                              : errorpercentage,
                                     matchscore_bias,
                                     history_size);
    querymatchoutoptions->ggemi
      = gt_greedy_extend_matchinfo_new(maxalignedlendifference,
                                       history_size, /* default value */
                                       perc_mat_history,
                                       0,/* userdefinedleastlength not used */
                                       errorpercentage,
                                       evalue_threshold,
                                       a_extend_char_access,
                                       b_extend_char_access,
                                       cam_generic,
                                       sensitivity,
                                       querymatchoutoptions->pol_info);
    if (always_polished_ends)
    {
      gt_eoplist_polished_ends(querymatchoutoptions->eoplist,
                               querymatchoutoptions->pol_info,true,
                               gt_querymatch_polinfo_display(out_display_flag));
    }
    if (gt_querymatch_seed_in_algn_display(out_display_flag))
    {
      gt_eoplist_display_seed_in_alignment_set(querymatchoutoptions->eoplist);
    }
    querymatchoutoptions->always_polished_ends = always_polished_ends;
  }
}

// Assembly:
pushq %rbx
subq $0xa0, %rsp
movq %rcx, 0x48(%rsp)
movq %rdx, 0x50(%rsp)
movq %rsi, %r10
movq 0x48(%rsp), %rsi
movq %rdi, %r11
movq 0x50(%rsp), %rdi
movq 0xd8(%rsp), %rax
movb 0xd0(%rsp), %al
movq 0xc8(%rsp), %rcx
movb 0xc0(%rsp), %cl
movb 0xb8(%rsp), %dl
movl 0xb0(%rsp), %ebx
movq %r11, 0x98(%rsp)
movq %r10, 0x90(%rsp)
movsd %xmm0, 0x88(%rsp)
movq %rdi, 0x80(%rsp)
movq %rsi, 0x78(%rsp)
movq %r8, 0x70(%rsp)
movl %r9d, 0x6c(%rsp)
andb $0x1, %dl
movb %dl, 0x6b(%rsp)
andb $0x1, %cl
movb %cl, 0x6a(%rsp)
movsd %xmm1, 0x60(%rsp)
andb $0x1, %al
movb %al, 0x5f(%rsp)
cmpq $0x0, 0x90(%rsp)
jbe 0x263e2d
jmp 0x263c39
cmpq $0x0, 0x98(%rsp)
jne 0x263c7c
movq 0x3d8355(%rip), %rax    # 0x63bfa0
movq (%rax), %rdi
leaq 0x2b23be(%rip), %rsi    # 0x516013
leaq 0x31a5a9(%rip), %rdx    # 0x57e205
leaq 0x318b87(%rip), %rcx    # 0x57c7ea
leaq 0x318b63(%rip), %r8     # 0x57c7cd
movl $0x86, %r9d
movb $0x0, %al
callq 0x199f0
callq 0x19370
jmp 0x263c7e
callq 0x4c67d0
movq %rax, %rcx
movq 0x98(%rsp), %rax
movq %rcx, 0x40(%rax)
testb $0x1, 0x6a(%rsp)
je 0x263ccb
cmpq $0x14, 0x90(%rsp)
jbe 0x263cb3
movq 0x90(%rsp), %rax
movq %rax, 0x40(%rsp)
jmp 0x263cbf
movl $0x14, %eax
movq %rax, 0x40(%rsp)
jmp 0x263cbf
movq 0x40(%rsp), %rax
movq %rax, 0x38(%rsp)
jmp 0x263cd8
movq 0x90(%rsp), %rax
movq %rax, 0x38(%rsp)
movq 0x38(%rsp), %rax
movq %rax, %xmm0
movaps 0x2b4c47(%rip), %xmm1   # 0x518930
punpckldq %xmm1, %xmm0    # xmm0 = xmm0[0],xmm1[0],xmm0[1],xmm1[1]
movapd 0x2b4c4b(%rip), %xmm1   # 0x518940
subpd %xmm1, %xmm0
movaps %xmm0, %xmm1
unpckhpd %xmm0, %xmm0            # xmm0 = xmm0[1,1]
addsd %xmm1, %xmm0
movsd 0x60(%rsp), %xmm1
movq 0x78(%rsp), %rdi
callq 0x24f330
movq %rax, %rcx
movq 0x98(%rsp), %rax
movq %rcx, 0xb0(%rax)
movq 0x80(%rsp), %rdi
movq 0x78(%rsp), %rsi
movq 0x70(%rsp), %rdx
movq 0x90(%rsp), %r8
movsd 0x88(%rsp), %xmm0
movl 0x6c(%rsp), %r9d
movl 0xb0(%rsp), %ebx
movb 0x6b(%rsp), %r11b
movq 0xc8(%rsp), %r10
movq 0x98(%rsp), %rax
movq 0xb0(%rax), %rax
xorl %ecx, %ecx
andb $0x1, %r11b
movl %ebx, (%rsp)
movzbl %r11b, %r11d
movl %r11d, 0x8(%rsp)
movq %r10, 0x10(%rsp)
movq %rax, 0x18(%rsp)
callq 0x2abe10
movq %rax, %rcx
movq 0x98(%rsp), %rax
movq %rcx, 0x48(%rax)
testb $0x1, 0x5f(%rsp)
je 0x263df4
movq 0x98(%rsp), %rax
movq 0x28(%rax), %rax
movq %rax, 0x28(%rsp)
movq 0x98(%rsp), %rax
movq 0xb0(%rax), %rax
movq %rax, 0x30(%rsp)
movq 0xd8(%rsp), %rdi
callq 0x2656f0
movq 0x28(%rsp), %rdi
movq 0x30(%rsp), %rsi
movzbl %al, %ecx
andl $0x1, %ecx
movl $0x1, %edx
callq 0x4c6640
movq 0xd8(%rsp), %rdi
callq 0x265660
testb $0x1, %al
jne 0x263e07
jmp 0x263e18
movq 0x98(%rsp), %rax
movq 0x28(%rax), %rdi
callq 0x4c65c0
movb 0x5f(%rsp), %cl
movq 0x98(%rsp), %rax
andb $0x1, %cl
movb %cl, 0xa8(%rax)
addq $0xa0, %rsp
popq %rbx
retq
nopw %cs:(%rax,%rax)