// File: /workspace/github_c_makefile_star2_O1/icebert[P]pblat/jkOwnLib/genoFind.c
// Function: gfPcrClumps
struct gfClump *gfPcrClumps(struct genoFind *gf, char *fPrimer, int fPrimerSize, 
	char *rPrimer, int rPrimerSize, int minDistance, int maxDistance)
/* Find possible PCR hits.  The fPrimer and rPrimer are on opposite strands. */
{
struct gfClump *clumpList;
if (gf->segSize > 0)
    errAbort("Can't do PCR on large tile sizes");
if (gf->isPep)
    errAbort("Can't do PCR on protein/translated index");
tolowers(fPrimer);
tolowers(rPrimer);
reverseComplement(rPrimer, rPrimerSize);
clumpList = pcrClumps(gf, fPrimer, fPrimerSize, rPrimer, rPrimerSize, 
	minDistance, maxDistance);
reverseComplement(rPrimer, rPrimerSize);
return clumpList;
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
subq $0xa8, %rsp
movl %r9d, %ebp
movl %r8d, %ebx
movq %rcx, 0x8(%rsp)
movl %edx, %r14d
movq %rsi, %r15
movq %rdi, %r12
cmpl $0x0, 0x2c(%rdi)
jle 0xf33d
leaq 0x7e83b(%rip), %rdi     # 0x8db71
xorl %eax, %eax
callq 0x26b6f
cmpb $0x0, 0x28(%r12)
je 0xf353
leaq 0x7e846(%rip), %rdi     # 0x8db92
xorl %eax, %eax
callq 0x26b6f
movq %r15, 0x20(%rsp)
movq %r15, %rdi
callq 0x21fb5
movq 0x8(%rsp), %r15
movq %r15, %rdi
callq 0x21fb5
movslq %ebx, %rbx
movq %r15, %rdi
movq %rbx, %rsi
callq 0x250f6
movq %r12, 0x50(%rsp)
movl 0xc(%r12), %eax
subl %eax, %r14d
movq %rbx, 0x68(%rsp)
movl %ebx, %r15d
movq %rax, 0x10(%rsp)
subl %eax, %r15d
xorl %edi, %edi
movl $0x1, %esi
callq 0x29160
movq %rax, 0x18(%rsp)
movslq %r15d, %rbx
leaq (,%rbx,4), %rdi
callq 0x2db04
movq %rax, 0x30(%rsp)
movl %r15d, 0x40(%rsp)
movl %r15d, %eax
movq %rax, 0x48(%rsp)
testl %ebx, %ebx
jle 0xf440
leaq 0xb05ba(%rip), %r15     # 0xbf990
leaq 0x7e961(%rip), %rbx     # 0x8dd3e
movq 0x8(%rsp), %r12
xorl %r13d, %r13d
movl $0x0, %eax
cmpl $0x0, 0x10(%rsp)
jle 0xf416
xorl %ecx, %ecx
xorl %eax, %eax
movsbq (%r12,%rcx), %rdx
movl (%r15,%rdx,4), %edx
testl %edx, %edx
js 0xf411
leal (%rdx,%rax,4), %eax
incq %rcx
cmpq %rcx, 0x10(%rsp)
jne 0xf3f5
jmp 0xf416
movl $0xffffffff, %eax       # imm = 0xFFFFFFFF
movq 0x30(%rsp), %rcx
movl %eax, (%rcx,%r13,4)
cmpl $-0x1, %eax
jne 0xf433
movq %rbx, %rdi
movq 0x8(%rsp), %rsi
xorl %eax, %eax
callq 0x26b6f
incq %r13
incq %r12
cmpq 0x48(%rsp), %r13
jne 0xf3e5
testl %r14d, %r14d
movq 0x20(%rsp), %rsi
movq 0x50(%rsp), %r13
jle 0xf6b3
movl 0xe0(%rsp), %eax
movl %r14d, %ecx
movq %rcx, 0x70(%rsp)
movl %eax, %r14d
xorl %eax, %eax
leaq 0xb0522(%rip), %rdi     # 0xbf990
movl %ebp, 0x44(%rsp)
movq %rax, 0x78(%rsp)
movl $0x0, %eax
cmpl $0x0, 0x10(%rsp)
jle 0xf4a7
xorl %ecx, %ecx
xorl %eax, %eax
movsbq (%rsi,%rcx), %rdx
movl (%rdi,%rdx,4), %edx
testl %edx, %edx
js 0xf4a2
leal (%rdx,%rax,4), %eax
incq %rcx
cmpq %rcx, 0x10(%rsp)
jne 0xf487
jmp 0xf4a7
movl $0xffffffff, %eax       # imm = 0xFFFFFFFF
movq %rsi, 0x20(%rsp)
testl %eax, %eax
js 0xf691
movl %eax, %eax
movq 0x38(%r13), %rcx
movslq (%rcx,%rax,4), %rcx
movq %rcx, 0x88(%rsp)
testq %rcx, %rcx
jle 0xf691
movq 0x48(%r13), %rcx
movq (%rcx,%rax,8), %rax
movq %rax, 0x80(%rsp)
movq $0x0, 0x28(%rsp)
cmpl $0x0, 0x40(%rsp)
jle 0xf676
movq 0x80(%rsp), %rax
movq 0x28(%rsp), %rcx
movl (%rax,%rcx,4), %edx
xorl %ecx, %ecx
movl %edx, 0x4(%rsp)
movq 0x30(%rsp), %rax
movq %rcx, 0x90(%rsp)
movslq (%rax,%rcx,4), %rax
movq 0x38(%r13), %rcx
movslq (%rcx,%rax,4), %rsi
testq %rsi, %rsi
jle 0xf660
movq 0x48(%r13), %rcx
movq (%rcx,%rax,8), %rdi
xorl %r12d, %r12d
movq %rsi, 0x60(%rsp)
movq %rdi, 0x58(%rsp)
movl (%rdi,%r12,4), %ebx
movl %ebx, %eax
subl %edx, %eax
jbe 0xf654
cmpl %ebp, %eax
setl %cl
cmpl %r14d, %eax
setg %al
orb %cl, %al
jne 0xf654
movq %r13, %rdi
movl 0x4(%rsp), %esi
callq 0xf826
movq 0x58(%rsp), %rdi
movq 0x60(%rsp), %rsi
movl 0x4(%rsp), %edx
cmpl 0x1c(%rax), %ebx
jae 0xf654
movq %rax, %r15
movq 0x8(%rax), %r14
testq %r14, %r14
jne 0xf598
movq 0x10(%r15), %rax
movq 0x8(%rax), %r14
movl 0x18(%r15), %ebp
movq 0x18(%rsp), %rdi
movq %r14, %rsi
callq 0x29029
movq %rax, %r13
testq %rax, %rax
jne 0xf5d1
movl 0x1c(%r15), %esi
subl %ebp, %esi
xorl %edi, %edi
callq 0x1bff7
movq %rax, %r13
movq 0x18(%rsp), %rdi
movq %r14, %rsi
movq %rax, %rdx
callq 0x28dbe
movl 0x4(%rsp), %r14d
subl %ebp, %r14d
subl %ebp, %ebx
movq %r13, %rdi
movl %r14d, %esi
movl %ebx, %edx
callq 0x1c1c3
movq %rax, 0x38(%rsp)
testq %rax, %rax
je 0xf61b
movq %rax, %rbp
movl 0x8(%rbp), %esi
cmpl %r14d, %esi
cmovll %esi, %r14d
movl 0xc(%rbp), %edx
cmpl %ebx, %edx
cmovgl %edx, %ebx
movq %r13, %rdi
movq %r15, %rcx
callq 0x1c606
movq (%rbp), %rbp
testq %rbp, %rbp
jne 0xf5f5
leaq 0x38(%rsp), %rdi
callq 0x1fcd6
movq %r13, %rdi
movl %r14d, %esi
movl %ebx, %edx
movq %r15, %rcx
callq 0x1c116
movl 0x44(%rsp), %ebp
movq 0x50(%rsp), %r13
movl 0xe0(%rsp), %r14d
movl 0x4(%rsp), %edx
movq 0x60(%rsp), %rsi
movq 0x58(%rsp), %rdi
incq %r12
cmpq %rsi, %r12
jne 0xf540
movq 0x90(%rsp), %rcx
incq %rcx
cmpq 0x48(%rsp), %rcx
jne 0xf509
movq 0x28(%rsp), %rcx
incq %rcx
movq %rcx, 0x28(%rsp)
cmpq 0x88(%rsp), %rcx
jne 0xf4e8
movq 0x78(%rsp), %rax
incq %rax
movq 0x20(%rsp), %rsi
incq %rsi
cmpq 0x70(%rsp), %rax
leaq 0xb02e3(%rip), %rdi     # 0xbf990
jne 0xf472
movq 0x18(%rsp), %rdi
callq 0x293e9
movq %rax, 0x38(%rsp)
testq %rax, %rax
je 0xf75b
movq %rax, %rbx
xorl %ebp, %ebp
leaq 0x98(%rsp), %r14
leaq 0xa0(%rsp), %r15
movq 0x10(%rbx), %rdi
movq %rdi, 0xa0(%rsp)
callq 0x1c4eb
movq %rax, 0x98(%rsp)
testq %rax, %rax
je 0xf73b
movq %rax, %r13
movl $0x38, %edi
callq 0x2dc95
movq %rax, %r12
movq 0x10(%r13), %rax
movq %rax, 0x10(%r12)
movl 0x8(%r13), %eax
movl %eax, 0x18(%r12)
movl 0xc(%r13), %eax
movl %eax, 0x1c(%r12)
movq %rbp, (%r12)
movq (%r13), %r13
movq %r12, %rbp
testq %r13, %r13
jne 0xf701
jmp 0xf73e
movq %rbp, %r12
movq %r14, %rdi
callq 0x1fcd6
movq %r15, %rdi
callq 0x1c0b2
movq (%rbx), %rbx
movq %r12, %rbp
testq %rbx, %rbx
jne 0xf6e0
jmp 0xf75e
xorl %r12d, %r12d
leaq 0x38(%rsp), %rdi
callq 0x29450
leaq 0x18(%rsp), %rdi
callq 0x29565
leaq 0x30(%rsp), %rdi
callq 0x2dd51
movq 0x8(%rsp), %rdi
movq 0x68(%rsp), %rsi
callq 0x250f6
movq %r12, %rax
addq $0xa8, %rsp
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
retq