// File: /workspace/github_cpp_makefile_star2_O3/ncbi[P]amr/alignment.cpp
// Function: Alignment_sp::Alignment::getGlobalTargetStart() const
long Alignment::getGlobalTargetStart () const
{ 
  ASSERT (! targetProt);
  ASSERT (refProt);
  return targetStrand
           ? (long) targetStart - 3 * (long) refStart
           : (long) targetEnd   + 3 * (long) refStart; 
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
subq $0x108, %rsp            # imm = 0x108
movq %rdi, %rbx
callq 0xb070
movl $0x0, (%rax)
cmpb $0x1, 0x8(%rbx)
je 0x677d5
cmpb $0x0, 0x70(%rbx)
je 0x67874
movzbl 0x68(%rbx), %eax
movl %eax, %ecx
xorl $0x1, %ecx
testl %eax, %eax
movq $-0x3, %rdx
movl $0x3, %eax
cmovneq %rdx, %rax
imulq 0xb8(%rbx), %rax
addq 0x50(%rbx,%rcx,8), %rax
addq $0x108, %rsp            # imm = 0x108
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
retq
callq 0xb6b0
testl %eax, %eax
jne 0x67913
leaq 0x98(%rsp), %r14
movq %r14, -0x10(%r14)
leaq 0x2f823(%rip), %rsi     # 0x97018
leaq 0x2f832(%rip), %rdx     # 0x9702e
leaq 0x88(%rsp), %rdi
callq 0xdc76
leaq 0xa8(%rsp), %rdi
movl $0x3ed, %esi            # imm = 0x3ED
callq 0xe1b2
leaq 0xc8(%rsp), %rdi
leaq 0x88(%rsp), %rsi
leaq 0xa8(%rsp), %rdx
callq 0xe10a
leaq 0x2b992(%rip), %rsi     # 0x931d1
leaq 0xc8(%rsp), %rdi
callq 0xbb10
leaq 0x18(%rsp), %r15
movq %r15, -0x10(%r15)
movq (%rax), %rdx
movq %rax, %rcx
addq $0x10, %rcx
cmpq %rcx, %rdx
jne 0x6791d
movups (%rcx), %xmm0
movups %xmm0, (%r15)
jmp 0x6792a
callq 0xb6b0
testl %eax, %eax
jne 0x67913
leaq 0x98(%rsp), %r14
movq %r14, -0x10(%r14)
leaq 0x2f784(%rip), %rsi     # 0x97018
leaq 0x2f793(%rip), %rdx     # 0x9702e
leaq 0x88(%rsp), %rdi
callq 0xdc76
leaq 0xa8(%rsp), %rdi
movl $0x3ee, %esi            # imm = 0x3EE
callq 0xe1b2
leaq 0xc8(%rsp), %rdi
leaq 0x88(%rsp), %rsi
leaq 0xa8(%rsp), %rdx
callq 0xe10a
leaq 0x2b8f3(%rip), %rsi     # 0x931d1
leaq 0xc8(%rsp), %rdi
callq 0xbb10
leaq 0x18(%rsp), %r15
movq %r15, -0x10(%r15)
movq (%rax), %rdx
movq %rax, %rcx
addq $0x10, %rcx
cmpq %rcx, %rdx
jne 0x6799e
movups (%rcx), %xmm0
movups %xmm0, (%r15)
jmp 0x679ab
movl $0x1, %edi
callq 0xb6d0
movq %rdx, 0x8(%rsp)
movq (%rcx), %rdx
movq %rdx, 0x18(%rsp)
movq 0x8(%rax), %rdx
movq %rdx, 0x10(%rsp)
movq %rcx, (%rax)
movq $0x0, 0x8(%rax)
movb $0x0, 0x10(%rax)
leaq 0x78(%rsp), %r12
movq %r12, -0x10(%r12)
leaq 0x30390(%rip), %rsi     # 0x97ce3
leaq 0x303c3(%rip), %rdx     # 0x97d1d
leaq 0x68(%rsp), %rdi
callq 0xdc76
leaq 0x2bf46(%rip), %rsi     # 0x938b1
leaq 0x68(%rsp), %rdi
callq 0xbb10
leaq 0x38(%rsp), %r13
movq %r13, -0x10(%r13)
movq (%rax), %rdx
movq %rax, %rcx
addq $0x10, %rcx
cmpq %rcx, %rdx
jne 0x67a18
movups (%rcx), %xmm0
movups %xmm0, (%r13)
jmp 0x67a25
movq %rdx, 0x8(%rsp)
movq (%rcx), %rdx
movq %rdx, 0x18(%rsp)
movq 0x8(%rax), %rdx
movq %rdx, 0x10(%rsp)
movq %rcx, (%rax)
movq $0x0, 0x8(%rax)
movb $0x0, 0x10(%rax)
leaq 0x78(%rsp), %r12
movq %r12, -0x10(%r12)
leaq 0x3030f(%rip), %rsi     # 0x97ce3
leaq 0x30342(%rip), %rdx     # 0x97d1d
leaq 0x68(%rsp), %rdi
callq 0xdc76
leaq 0x2bec5(%rip), %rsi     # 0x938b1
leaq 0x68(%rsp), %rdi
callq 0xbb10
leaq 0x38(%rsp), %r13
movq %r13, -0x10(%r13)
movq (%rax), %rdx
movq %rax, %rcx
addq $0x10, %rcx
cmpq %rcx, %rdx
jne 0x67a88
movups (%rcx), %xmm0
movups %xmm0, (%r13)
jmp 0x67a95
movq %rdx, 0x28(%rsp)
movq (%rcx), %rdx
movq %rdx, 0x38(%rsp)
movq 0x8(%rax), %rsi
leaq 0x28(%rsp), %rdx
movq %rsi, 0x8(%rdx)
movq %rcx, (%rax)
movq $0x0, 0x8(%rax)
movb $0x0, 0x10(%rax)
leaq 0xe8(%rsp), %rdi
leaq 0x8(%rsp), %rsi
callq 0xe10a
leaq 0x302c4(%rip), %rsi     # 0x97d1e
leaq 0xe8(%rsp), %rdi
callq 0xbb10
leaq 0x58(%rsp), %rbp
movq %rbp, -0x10(%rbp)
movq (%rax), %rdx
movq %rax, %rcx
addq $0x10, %rcx
cmpq %rcx, %rdx
jne 0x67af8
movups (%rcx), %xmm0
movups %xmm0, (%rbp)
jmp 0x67b05
movq %rdx, 0x28(%rsp)
movq (%rcx), %rdx
movq %rdx, 0x38(%rsp)
movq 0x8(%rax), %rsi
leaq 0x28(%rsp), %rdx
movq %rsi, 0x8(%rdx)
movq %rcx, (%rax)
movq $0x0, 0x8(%rax)
movb $0x0, 0x10(%rax)
leaq 0xe8(%rsp), %rdi
leaq 0x8(%rsp), %rsi
callq 0xe10a
leaq 0x3019c(%rip), %rsi     # 0x97c66
leaq 0xe8(%rsp), %rdi
callq 0xbb10
leaq 0x58(%rsp), %rbp
movq %rbp, -0x10(%rbp)
movq (%rax), %rdx
movq %rax, %rcx
addq $0x10, %rcx
cmpq %rcx, %rdx
jne 0x67b26
movups (%rcx), %xmm0
movups %xmm0, (%rbp)
jmp 0x67b33
movq %rdx, 0x48(%rsp)
movq (%rcx), %rdx
movq %rdx, 0x58(%rsp)
movq 0x8(%rax), %rdx
leaq 0x48(%rsp), %rdi
movq %rdx, 0x8(%rdi)
movq %rcx, (%rax)
movq $0x0, 0x8(%rax)
movb $0x0, 0x10(%rax)
callq 0x1155a
movq %rdx, 0x48(%rsp)
movq (%rcx), %rdx
movq %rdx, 0x58(%rsp)
movq 0x8(%rax), %rdx
leaq 0x48(%rsp), %rdi
movq %rdx, 0x8(%rdi)
movq %rcx, (%rax)
movq $0x0, 0x8(%rax)
movb $0x0, 0x10(%rax)
callq 0x1155a
jmp 0x67b58
jmp 0x67b74
movq %rax, %rbx
movq 0x48(%rsp), %rdi
cmpq %rbp, %rdi
je 0x67b77
movq 0x58(%rsp), %rsi
incq %rsi
callq 0xb5a0
jmp 0x67b77
movq %rax, %rbx
leaq 0xf8(%rsp), %rax
movq -0x10(%rax), %rdi
cmpq %rax, %rdi
je 0x67b9f
movq 0xf8(%rsp), %rsi
incq %rsi
callq 0xb5a0
jmp 0x67b9f
jmp 0x67b9c
movq %rax, %rbx
movq 0x28(%rsp), %rdi
cmpq %r13, %rdi
je 0x67bbd
movq 0x38(%rsp), %rsi
incq %rsi
callq 0xb5a0
jmp 0x67bbd
jmp 0x67bba
movq %rax, %rbx
movq 0x68(%rsp), %rdi
cmpq %r12, %rdi
je 0x67bdb
movq 0x78(%rsp), %rsi
incq %rsi
callq 0xb5a0
jmp 0x67bdb
jmp 0x67bd8
movq %rax, %rbx
movq 0x8(%rsp), %rdi
cmpq %r15, %rdi
je 0x67bf9
movq 0x18(%rsp), %rsi
incq %rsi
callq 0xb5a0
jmp 0x67bf9
jmp 0x67bf6
movq %rax, %rbx
leaq 0xd8(%rsp), %rax
movq -0x10(%rax), %rdi
cmpq %rax, %rdi
je 0x67c21
movq 0xd8(%rsp), %rsi
incq %rsi
callq 0xb5a0
jmp 0x67c21
jmp 0x67c1e
movq %rax, %rbx
leaq 0xb8(%rsp), %rax
movq -0x10(%rax), %rdi
cmpq %rax, %rdi
je 0x67c49
movq 0xb8(%rsp), %rsi
incq %rsi
callq 0xb5a0
jmp 0x67c49
jmp 0x67c46
movq %rax, %rbx
movq 0x88(%rsp), %rdi
cmpq %r14, %rdi
je 0x67c6d
movq 0x98(%rsp), %rsi
incq %rsi
callq 0xb5a0
jmp 0x67c6d
jmp 0x67c6a
movq %rax, %rbx
movq %rbx, %rdi
callq 0xba60