// File: auton1[P]viterbi/bcf_entry.cpp
// Function: bcf_entry::bcf_entry(header&, std::vector<bool, std::allocator<bool>>&)
bcf_entry::bcf_entry(header &header_obj, vector<bool> &include_individual)
{
	N_indv = header_obj.N_indv;
	include_indv = include_individual;
	include_genotype = vector<bool>(N_indv, true);
	basic_parsed = false; fully_parsed = false;
	parsed_ALT = false; parsed_FILTER = false;
	parsed_INFO = false; parsed_FORMAT = false;
	CHROM = ""; POS = -1; REF = ""; QUAL = -1;
	N_INFO_removed = 0; N_FORMAT_removed = 0;
	passed_filters = true; parsed_FORMAT_binary = false;
	parsed_GT = vector<bool>(N_indv, false); parsed_GQ = vector<bool>(N_indv, false);
	parsed_DP = vector<bool>(N_indv, false); parsed_FT = vector<bool>(N_indv, false);
	GT_idx = -1; GQ_idx = -1; DP_idx = -1; FT_idx = -1;
	N_info = 0; N_format = 0; L_shared = 0; L_indiv = 0; line_pos = 0;
	N_allele = 0; INFO_pos = 0; FILTER_pos = 0; ALT_pos = 0; FORMAT_pos = 0;
	FORMAT_positions.resize(0); FORMAT_types.resize(0); FORMAT_sizes.resize(0); FORMAT_skip.resize(0); FORMAT_keys.resize(0);
	line.clear();

	entry_header = header_obj;
}

// Assembly:
subq $0x1a8, %rsp            # imm = 0x1A8
movq %rdi, 0x1a0(%rsp)
movq %rsi, 0x198(%rsp)
movq %rdx, 0x190(%rsp)
movq 0x1a0(%rsp), %rdi
movq %rdi, 0x88(%rsp)
callq 0x391a0
movq 0x88(%rsp), %rdi
leaq 0x5ed8d(%rip), %rax     # 0x92bc0
movq %rax, (%rdi)
addq $0x6d0, %rdi            # imm = 0x6D0
movq %rdi, 0x80(%rsp)
callq 0xea00
movq 0x88(%rsp), %rdi
movq 0x198(%rsp), %rax
movl 0x58(%rax), %eax
movl %eax, 0x8(%rdi)
movq 0x190(%rsp), %rsi
addq $0x1f0, %rdi            # imm = 0x1F0
callq 0x1ec40
jmp 0x33e76
movq 0x88(%rsp), %rax
movl 0x8(%rax), %eax
movq %rax, 0x70(%rsp)
movb $0x1, 0x157(%rsp)
leaq 0x156(%rsp), %rdi
movq %rdi, 0x78(%rsp)
callq 0x20810
movq 0x70(%rsp), %rsi
movq 0x78(%rsp), %rcx
leaq 0x158(%rsp), %rdi
leaq 0x157(%rsp), %rdx
callq 0x20820
jmp 0x33ec1
movq 0x88(%rsp), %rdi
addq $0x218, %rdi            # imm = 0x218
leaq 0x158(%rsp), %rsi
movq %rsi, 0x68(%rsp)
callq 0x208a0
movq 0x68(%rsp), %rdi
callq 0x11300
leaq 0x156(%rsp), %rdi
callq 0x1e6a0
movq 0x88(%rsp), %rdi
movb $0x0, 0x3d8(%rdi)
movb $0x0, 0x3d9(%rdi)
movb $0x0, 0x3da(%rdi)
movb $0x0, 0x3db(%rdi)
movb $0x0, 0x3dc(%rdi)
movb $0x0, 0x3dd(%rdi)
addq $0x3e0, %rdi            # imm = 0x3E0
leaq 0x41df0(%rip), %rsi     # 0x75d29
callq 0x67b0
jmp 0x33f40
movq 0x88(%rsp), %rdi
movl $0xffffffff, 0x400(%rdi) # imm = 0xFFFFFFFF
addq $0x428, %rdi            # imm = 0x428
leaq 0x41dc9(%rip), %rsi     # 0x75d29
callq 0x67b0
jmp 0x33f67
movq 0x88(%rsp), %rax
movabsq $-0x4010000000000000, %rcx # imm = 0xBFF0000000000000
movq %rcx, 0x460(%rax)
movl $0x0, 0x4c8(%rax)
movl $0x0, 0x4cc(%rax)
movb $0x1, 0xc(%rax)
movb $0x0, 0x3de(%rax)
movl 0x8(%rax), %eax
movq %rax, 0x58(%rsp)
movb $0x0, 0x127(%rsp)
leaq 0x126(%rsp), %rdi
movq %rdi, 0x60(%rsp)
callq 0x20810
movq 0x58(%rsp), %rsi
movq 0x60(%rsp), %rcx
leaq 0x128(%rsp), %rdi
leaq 0x127(%rsp), %rdx
callq 0x20820
jmp 0x33fe2
movq 0x88(%rsp), %rdi
addq $0x560, %rdi            # imm = 0x560
leaq 0x128(%rsp), %rsi
movq %rsi, 0x40(%rsp)
callq 0x208a0
movq 0x40(%rsp), %rdi
callq 0x11300
leaq 0x126(%rsp), %rdi
callq 0x1e6a0
movq 0x88(%rsp), %rax
movl 0x8(%rax), %eax
movq %rax, 0x48(%rsp)
movb $0x0, 0xf7(%rsp)
leaq 0xf6(%rsp), %rdi
movq %rdi, 0x50(%rsp)
callq 0x20810
movq 0x48(%rsp), %rsi
movq 0x50(%rsp), %rcx
leaq 0xf8(%rsp), %rdi
leaq 0xf7(%rsp), %rdx
callq 0x20820
jmp 0x34065
movq 0x88(%rsp), %rdi
addq $0x588, %rdi            # imm = 0x588
leaq 0xf8(%rsp), %rsi
movq %rsi, 0x28(%rsp)
callq 0x208a0
movq 0x28(%rsp), %rdi
callq 0x11300
leaq 0xf6(%rsp), %rdi
callq 0x1e6a0
movq 0x88(%rsp), %rax
movl 0x8(%rax), %eax
movq %rax, 0x30(%rsp)
movb $0x0, 0xc7(%rsp)
leaq 0xc6(%rsp), %rdi
movq %rdi, 0x38(%rsp)
callq 0x20810
movq 0x30(%rsp), %rsi
movq 0x38(%rsp), %rcx
leaq 0xc8(%rsp), %rdi
leaq 0xc7(%rsp), %rdx
callq 0x20820
jmp 0x340e8
movq 0x88(%rsp), %rdi
addq $0x5b0, %rdi            # imm = 0x5B0
leaq 0xc8(%rsp), %rsi
movq %rsi, 0x10(%rsp)
callq 0x208a0
movq 0x10(%rsp), %rdi
callq 0x11300
leaq 0xc6(%rsp), %rdi
callq 0x1e6a0
movq 0x88(%rsp), %rax
movl 0x8(%rax), %eax
movq %rax, 0x18(%rsp)
movb $0x0, 0x97(%rsp)
leaq 0x96(%rsp), %rdi
movq %rdi, 0x20(%rsp)
callq 0x20810
movq 0x18(%rsp), %rsi
movq 0x20(%rsp), %rcx
leaq 0x98(%rsp), %rdi
leaq 0x97(%rsp), %rdx
callq 0x20820
jmp 0x3416b
movq 0x88(%rsp), %rdi
addq $0x5d8, %rdi            # imm = 0x5D8
leaq 0x98(%rsp), %rsi
movq %rsi, 0x8(%rsp)
callq 0x208a0
movq 0x8(%rsp), %rdi
callq 0x11300
leaq 0x96(%rsp), %rdi
callq 0x1e6a0
movq 0x88(%rsp), %rdi
movl $0xffffffff, 0x630(%rdi) # imm = 0xFFFFFFFF
movl $0xffffffff, 0x634(%rdi) # imm = 0xFFFFFFFF
movl $0xffffffff, 0x638(%rdi) # imm = 0xFFFFFFFF
movl $0xffffffff, 0x63c(%rdi) # imm = 0xFFFFFFFF
movl $0x0, 0x6b8(%rdi)
movl $0x0, 0x6bc(%rdi)
movl $0x0, 0x6c4(%rdi)
movl $0x0, 0x6c8(%rdi)
movl $0x0, 0x6cc(%rdi)
movl $0x0, 0x6c0(%rdi)
movl $0x0, 0x6e8(%rdi)
movl $0x0, 0x6ec(%rdi)
movl $0x0, 0x6f0(%rdi)
movl $0x0, 0x6f4(%rdi)
addq $0x640, %rdi            # imm = 0x640
xorl %eax, %eax
movl %eax, %esi
callq 0x393f0
jmp 0x34249
movq 0x88(%rsp), %rdi
addq $0x658, %rdi            # imm = 0x658
xorl %eax, %eax
movl %eax, %esi
callq 0x393f0
jmp 0x34263
movq 0x88(%rsp), %rdi
addq $0x670, %rdi            # imm = 0x670
xorl %eax, %eax
movl %eax, %esi
callq 0x393f0
jmp 0x3427d
movq 0x88(%rsp), %rdi
addq $0x688, %rdi            # imm = 0x688
xorl %eax, %eax
movl %eax, %esi
callq 0x393f0
jmp 0x34297
movq 0x88(%rsp), %rdi
addq $0x6a0, %rdi            # imm = 0x6A0
xorl %eax, %eax
movl %eax, %esi
callq 0x393f0
jmp 0x342b1
movq 0x88(%rsp), %rdi
addq $0x3c0, %rdi            # imm = 0x3C0
callq 0x39490
movq 0x88(%rsp), %rdi
movq 0x198(%rsp), %rsi
addq $0x10, %rdi
callq 0x205e0
jmp 0x342e0
addq $0x1a8, %rsp            # imm = 0x1A8
retq
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x188(%rsp)
movl %eax, 0x184(%rsp)
jmp 0x343b1
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x188(%rsp)
movl %eax, 0x184(%rsp)
leaq 0x156(%rsp), %rdi
callq 0x1e6a0
jmp 0x343b1
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x188(%rsp)
movl %eax, 0x184(%rsp)
leaq 0x126(%rsp), %rdi
callq 0x1e6a0
jmp 0x343b1
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x188(%rsp)
movl %eax, 0x184(%rsp)
leaq 0xf6(%rsp), %rdi
callq 0x1e6a0
jmp 0x343b1
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x188(%rsp)
movl %eax, 0x184(%rsp)
leaq 0xc6(%rsp), %rdi
callq 0x1e6a0
jmp 0x343b1
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x188(%rsp)
movl %eax, 0x184(%rsp)
leaq 0x96(%rsp), %rdi
callq 0x1e6a0
movq 0x80(%rsp), %rdi
callq 0xed70
movq 0x88(%rsp), %rdi
callq 0x39b90
movq 0x188(%rsp), %rdi
callq 0x69e0
nopl (%rax,%rax)