// File: /workspace/github_c_makefile_star2_O0/genometools[P]genometools/src/tools/gt_congruence.c
// Function: gt_cge_spacedseed_option_parser_new
static GtOptionParser
            *gt_cge_spacedseed_option_parser_new(void *tool_arguments)
{
  GtOptionParser *op;
  GtOption *option,
           *optionesaindex,
           *optionpckindex;
  Cge_spacedseed_options *arguments = tool_arguments;

  op = gt_option_parser_new("[options]",
                            "Match spaced seeds.");
  gt_option_parser_set_mail_address(op,"<kurtz@zbh.uni-hamburg.de>");

  optionesaindex = gt_option_new_string("esa",
                                     "Specify index (enhanced suffix array)",
                                     arguments->str_inputindex, NULL);
  gt_option_parser_add_option(op, optionesaindex);
  arguments->refoptionesaindex = gt_option_ref(optionesaindex);

  optionpckindex = gt_option_new_string("pck",
                                     "Specify index (packed index)",
                                     arguments->str_inputindex, NULL);
  gt_option_parser_add_option(op, optionpckindex);
  arguments->refoptionpckindex = gt_option_ref(optionpckindex);
  gt_option_exclude(optionesaindex,optionpckindex);
  gt_option_is_mandatory_either(optionesaindex,optionpckindex);

  option = gt_option_new_filename_array("q",
                                    "Specify files containing the "
                                    "query sequences",
                                    arguments->queryfilenames);
  gt_option_parser_add_option(op, option);
  gt_option_is_mandatory(option);

  option = gt_option_new_bool("cmp","compare results of offline and online "
                              "searches",&arguments->docompare,false);
  gt_option_parser_add_option(op, option);
  gt_option_is_development_option(option);

  option = gt_option_new_verbose(&arguments->verbose);
  gt_option_parser_add_option(op, option);

  return op;
}

// Assembly:
subq $0x38, %rsp
movq %rdi, 0x30(%rsp)
movq 0x30(%rsp), %rax
movq %rax, 0x8(%rsp)
leaq 0x503ecb(%rip), %rdi    # 0x52e3b5
leaq 0x4f084c(%rip), %rsi    # 0x51ad3d
callq 0xf1420
movq %rax, 0x28(%rsp)
movq 0x28(%rsp), %rdi
leaq 0x4ecddd(%rip), %rsi    # 0x5172e4
callq 0xf1a10
movq 0x8(%rsp), %rax
movq 0x8(%rax), %rdx
leaq 0x50082c(%rip), %rdi    # 0x52ad48
leaq 0x4f082e(%rip), %rsi    # 0x51ad51
xorl %eax, %eax
movl %eax, %ecx
callq 0xf69f0
movq %rax, 0x18(%rsp)
movq 0x28(%rsp), %rdi
movq 0x18(%rsp), %rsi
callq 0xf1600
movq 0x18(%rsp), %rdi
callq 0xf13c0
movq %rax, %rcx
movq 0x8(%rsp), %rax
movq %rcx, 0x18(%rax)
movq 0x8(%rsp), %rax
movq 0x8(%rax), %rdx
leaq 0x4f42e8(%rip), %rdi    # 0x51e84e
leaq 0x4f080a(%rip), %rsi    # 0x51ad77
xorl %eax, %eax
movl %eax, %ecx
callq 0xf69f0
movq %rax, 0x10(%rsp)
movq 0x28(%rsp), %rdi
movq 0x10(%rsp), %rsi
callq 0xf1600
movq 0x10(%rsp), %rdi
callq 0xf13c0
movq %rax, %rcx
movq 0x8(%rsp), %rax
movq %rcx, 0x20(%rax)
movq 0x18(%rsp), %rdi
movq 0x10(%rsp), %rsi
callq 0xf7320
movq 0x18(%rsp), %rdi
movq 0x10(%rsp), %rsi
callq 0xf6cf0
movq 0x8(%rsp), %rax
movq 0x10(%rax), %rdx
leaq 0x52e7f1(%rip), %rdi    # 0x558dbf
leaq 0x4f07bf(%rip), %rsi    # 0x51ad94
callq 0xf6b00
movq %rax, 0x20(%rsp)
movq 0x28(%rsp), %rdi
movq 0x20(%rsp), %rsi
callq 0xf1600
movq 0x20(%rsp), %rdi
callq 0xf6ca0
movq 0x8(%rsp), %rdx
addq $0x1, %rdx
leaq 0x511e97(%rip), %rdi    # 0x53c49f
leaq 0x4f07b2(%rip), %rsi    # 0x51adc1
xorl %ecx, %ecx
callq 0xf5f20
movq %rax, 0x20(%rsp)
movq 0x28(%rsp), %rdi
movq 0x20(%rsp), %rsi
callq 0xf1600
movq 0x20(%rsp), %rdi
callq 0xf7040
movq 0x8(%rsp), %rdi
addq $0x2, %rdi
callq 0xf5f90
movq %rax, 0x20(%rsp)
movq 0x28(%rsp), %rdi
movq 0x20(%rsp), %rsi
callq 0xf1600
movq 0x28(%rsp), %rax
addq $0x38, %rsp
retq