// File: /workspace/github_c_makefile_star2_O0/genometools[P]genometools/src/tools/gt_eval.c
// Function: gt_eval_option_parser_new
static GtOptionParser* gt_eval_option_parser_new(void *tool_arguments)
{
  EvalArguments *arguments = tool_arguments;
  GtOptionParser *op;
  GtOption *option, *ltroption, *ltrdeltaoption;
  gt_assert(arguments);

  op = gt_option_parser_new("reference_file prediction_file ",
                            "Compare annotation files and show "
                            "accuracy measures (prediction vs. reference).");

  /* -exondiff */
  option = gt_option_new_bool("exondiff", "show a diff for the exons",
                              &arguments->exondiff, false);
  gt_option_is_development_option(option);
  gt_option_parser_add_option(op, option);

  /* -exondiffcollapsed */
  option = gt_option_new_bool("exondiffcollapsed", "show a diff for the "
                              "collapsed exons", &arguments->exondiffcollapsed,
                              false);
  gt_option_is_development_option(option);
  gt_option_parser_add_option(op, option);

  /* -nuc */
  option = gt_option_new_bool("nuc",
                              "evaluate nucleotide level (memory consumption "
                              "is proportional to the input file sizes)",
                              &arguments->nuceval, true);
  gt_option_parser_add_option(op, option);

  /* -ltr */
  ltroption = gt_option_new_bool("ltr", "evaluate a LTR retrotransposon "
                                 "prediction instead of a gene prediction\n"
                                 "(all LTR_retrotransposon elements are "
                                 "considered to have an undetermined strand)",
                                 &arguments->evalLTR, false);
  gt_option_parser_add_option(op, ltroption);

  /* -ltrdelta */
  ltrdeltaoption = gt_option_new_uword("ltrdelta", "set allowed delta for LTR "
                                       "borders to be considered equal",
                                       &arguments->LTRdelta, 20);
  gt_option_parser_add_option(op, ltrdeltaoption);

  /* -v */
  option = gt_option_new_verbose(&arguments->verbose);
  gt_option_parser_add_option(op, option);

  /* output file options */
  gt_output_file_info_register_options(arguments->ofi, op, &arguments->outfp);

  /* option implications */
  gt_option_imply(ltrdeltaoption, ltroption);

  /* set comment function */
  gt_option_parser_set_comment_func(op, gt_gtdata_show_help, NULL);

  /* set minimum and maximum number of arguments */
  gt_option_parser_set_min_max_args(op, 2, 2);

  return op;
}

// Assembly:
subq $0x38, %rsp
movq %rdi, 0x30(%rsp)
movq 0x30(%rsp), %rax
movq %rax, 0x28(%rsp)
cmpq $0x0, 0x28(%rsp)
jne 0x34513
movq 0x607abe(%rip), %rax    # 0x63bfa0
movq (%rax), %rdi
leaq 0x4e1b27(%rip), %rsi    # 0x516013
leaq 0x54666c(%rip), %rdx    # 0x57ab5f
leaq 0x4e8bef(%rip), %rcx    # 0x51d0e9
leaq 0x4e8bd4(%rip), %r8     # 0x51d0d5
movl $0x3c, %r9d
movb $0x0, %al
callq 0x199f0
callq 0x19370
jmp 0x34515
leaq 0x4e8be7(%rip), %rdi    # 0x51d103
leaq 0x4e8c00(%rip), %rsi    # 0x51d123
callq 0xf1420
movq %rax, 0x20(%rsp)
movq 0x28(%rsp), %rdx
addq $0x1, %rdx
leaq 0x4e8c36(%rip), %rdi    # 0x51d173
leaq 0x4e8c38(%rip), %rsi    # 0x51d17c
xorl %ecx, %ecx
callq 0xf5f20
movq %rax, 0x18(%rsp)
movq 0x18(%rsp), %rdi
callq 0xf7040
movq 0x20(%rsp), %rdi
movq 0x18(%rsp), %rsi
callq 0xf1600
movq 0x28(%rsp), %rdx
addq $0x2, %rdx
leaq 0x4e8c1d(%rip), %rdi    # 0x51d196
leaq 0x4e8c28(%rip), %rsi    # 0x51d1a8
xorl %ecx, %ecx
callq 0xf5f20
movq %rax, 0x18(%rsp)
movq 0x18(%rsp), %rdi
callq 0xf7040
movq 0x20(%rsp), %rdi
movq 0x18(%rsp), %rsi
callq 0xf1600
movq 0x28(%rsp), %rdx
addq $0x3, %rdx
leaq 0x4e8c17(%rip), %rdi    # 0x51d1cc
leaq 0x4e8c14(%rip), %rsi    # 0x51d1d0
movl $0x1, %ecx
callq 0xf5f20
movq %rax, 0x18(%rsp)
movq 0x20(%rsp), %rdi
movq 0x18(%rsp), %rsi
callq 0xf1600
movq 0x28(%rsp), %rdx
addq $0x4, %rdx
leaq 0x55e205(%rip), %rdi    # 0x5927ef
leaq 0x4e8c36(%rip), %rsi    # 0x51d227
xorl %ecx, %ecx
callq 0xf5f20
movq %rax, 0x10(%rsp)
movq 0x20(%rsp), %rdi
movq 0x10(%rsp), %rsi
callq 0xf1600
movq 0x28(%rsp), %rdx
addq $0x8, %rdx
leaq 0x4e8ca3(%rip), %rdi    # 0x51d2bf
leaq 0x4e8ca5(%rip), %rsi    # 0x51d2c8
movl $0x14, %ecx
callq 0xf5fe0
movq %rax, 0x8(%rsp)
movq 0x20(%rsp), %rdi
movq 0x8(%rsp), %rsi
callq 0xf1600
movq 0x28(%rsp), %rdi
callq 0xf5f90
movq %rax, 0x18(%rsp)
movq 0x20(%rsp), %rdi
movq 0x18(%rsp), %rsi
callq 0xf1600
movq 0x28(%rsp), %rax
movq 0x10(%rax), %rdi
movq 0x20(%rsp), %rsi
movq 0x28(%rsp), %rdx
addq $0x18, %rdx
callq 0xf7d50
movq 0x8(%rsp), %rdi
movq 0x10(%rsp), %rsi
callq 0xf7090
movq 0x20(%rsp), %rdi
leaq 0x14d64a(%rip), %rsi    # 0x181ce0
xorl %eax, %eax
movl %eax, %edx
callq 0xf1770
movq 0x20(%rsp), %rdi
movl $0x2, %edx
movl %edx, %esi
callq 0xf2a40
movq 0x20(%rsp), %rax
addq $0x38, %rsp
retq
nopw (%rax,%rax)