LLM4Binary/decompile-bench-makefile huggingface dataset:
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/intset_32.c
// Function: gt_intset_32_get_idx_smallest_geq_test
static GtUword gt_intset_32_get_idx_smallest_geq_test(GtIntset *intset,
                                                     GtUword value)
{
  GtIntset32 *intset_32 = gt_intset_32_cast(intset);
  GtIntsetMembers *members = intset->members;

  GtUword sectionnum = GT_ELEM2SECTION_M(value);

  if (value > members->previouselem)
    return members->num_of_elems;

  gt_assert(value <= members->maxelement);
  if (members->sectionstart[sectionnum] < members->sectionstart[sectionnum+1]) {
    return members->sectionstart[sectionnum] +
           gt_intset_32_idx_sm_geq(
                  intset_32->elements + members->sectionstart[sectionnum],
                  intset_32->elements + members->sectionstart[sectionnum+1] - 1,
                  (uint32_t) value);
  }
  return members->sectionstart[sectionnum];
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
movq %rsi, %rbx
movq %rdi, %r14
callq 0x29d9c5
movq %rax, %rdi
movq %r14, %rsi
callq 0xf3576
movq 0x8(%r14), %rdx
movb 0x8(%rdx), %cl
movq %rbx, %rsi
shrq %cl, %rsi
cmpq %rbx, 0x38(%rdx)
jae 0x29e947
movq 0x28(%rdx), %rax
jmp 0x29e9a1
cmpq %rbx, 0x18(%rdx)
jb 0x29e9a9
movq %rax, %rcx
movq (%rdx), %rdx
movq (%rdx,%rsi,8), %rax
movq 0x8(%rdx,%rsi,8), %rsi
cmpq %rsi, %rax
jae 0x29e9a1
movq 0x10(%rcx), %rcx
cmpl %ebx, (%rcx,%rax,4)
jbe 0x29e96e
xorl %ecx, %ecx
jmp 0x29e99e
leaq (%rcx,%rax,4), %rdx
leaq (%rcx,%rsi,4), %rcx
addq $-0x4, %rcx
cmpl %ebx, (%rcx)
jae 0x29e98a
subq %rdx, %rcx
sarq $0x2, %rcx
incq %rcx
jmp 0x29e99e
pushq $-0x4
popq %rcx
movq %rcx, %rsi
addq $0x4, %rcx
cmpl %ebx, 0x4(%rdx,%rsi)
jb 0x29e98d
sarq $0x2, %rcx
addq %rcx, %rax
addq $0x8, %rsp
popq %rbx
popq %r14
retq
movq 0x1995b8(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x46659(%rip), %rsi     # 0x2e5013
leaq 0xdfd08(%rip), %rdx     # 0x37e6c9
leaq 0xe04ea(%rip), %rcx     # 0x37eeb2
leaq 0xe00c8(%rip), %r8      # 0x37ea97
movl $0x186, %r9d            # imm = 0x186
xorl %eax, %eax
callq 0x17a50
callq 0x17390
nopl (%rax)
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/intset_8.c
// Function: gt_intset_8_new
GtIntset* gt_intset_8_new(GtUword maxelement, GtUword num_of_elems)
{
  GtIntset *intset;
  GtIntset8 *intset_8;
  GtIntsetMembers *members;
  GtUword idx;

  gt_assert(num_of_elems != 0);

  intset = gt_intset_create(gt_intset_8_class());
  intset_8 = gt_intset_8_cast(intset);
  members = intset->members;

  members->currentsectionnum = 0;
  members->maxelement = maxelement;
  members->nextfree = 0;
  members->num_of_elems = num_of_elems;
  members->previouselem = ULONG_MAX;
  members->refcount = 0;

  members->logsectionsize = GT_BITS_FOR_TYPE(uint8_t);
  members->numofsections = GT_ELEM2SECTION_M(maxelement) + 1;

  intset_8->elements =
    gt_malloc(sizeof (*intset_8->elements) * num_of_elems);

  members->sectionstart = gt_malloc(sizeof (*members->sectionstart) *
                                    (members->numofsections + 1));

  members->sectionstart[0] = 0;
  for (idx = (GtUword) 1; idx <= members->numofsections; idx++) {
    members->sectionstart[idx] = num_of_elems;
  }
  return intset;
}

// Assembly:
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
testq %rsi, %rsi
je 0x29eaaa
movq %rsi, %rbx
movq %rdi, %r15
callq 0x29eae0
movq %rax, %rdi
callq 0xf349c
movq %rax, %r14
callq 0x29eae0
movq %rax, %rdi
movq %r14, %rsi
callq 0xf3576
movq 0x8(%r14), %r13
andq $0x0, 0x10(%r13)
movq %r15, 0x18(%r13)
andq $0x0, 0x20(%r13)
movq %rbx, 0x28(%r13)
orq $-0x1, 0x38(%r13)
movq %rax, %r12
andq $0x0, 0x40(%r13)
movq $0x8, 0x8(%r13)
shrq $0x8, %r15
incq %r15
movq %r15, 0x30(%r13)
leaq 0xe0490(%rip), %r15     # 0x37eee9
pushq $0x4c
popq %rdx
movq %rbx, %rdi
movq %r15, %rsi
callq 0x93160
movq %rax, 0x10(%r12)
movq 0x30(%r13), %rax
leaq 0x8(,%rax,8), %rdi
pushq $0x4f
popq %rdx
movq %r15, %rsi
callq 0x93160
movq %rax, (%r13)
andq $0x0, (%rax)
pushq $0x1
popq %rcx
cmpq 0x30(%r13), %rcx
ja 0x29ea9d
movq %rbx, (%rax,%rcx,8)
incq %rcx
jmp 0x29ea8e
movq %r14, %rax
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
retq
movq 0x1994b7(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x46558(%rip), %rsi     # 0x2e5013
leaq 0xdf97b(%rip), %rdx     # 0x37e43d
leaq 0xe0410(%rip), %rcx     # 0x37eed9
leaq 0xe0419(%rip), %r8      # 0x37eee9
pushq $0x3b
popq %r9
xorl %eax, %eax
callq 0x17a50
callq 0x17390
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/intset_8.c
// Function: gt_intset_8_class
const GtIntsetClass* gt_intset_8_class(void)
{
  static const GtIntsetClass *this_c = NULL;
  if (this_c == NULL) {
    this_c = gt_intset_class_new(sizeof (GtIntset8),
                                 gt_intset_8_add,
                                 gt_intset_8_file_is_type,
                                 gt_intset_8_get,
                                 gt_intset_8_io,
                                 gt_intset_8_get_idx_smallest_geq,
                                 gt_intset_8_is_member,
                                 gt_intset_8_size_of_rep,
                                 gt_intset_8_size,
                                 gt_intset_8_size_of_struct,
                                 gt_intset_8_write,
                                 gt_intset_8_delete);
  }
  return this_c;
}

// Assembly:
movq 0x19f4c1(%rip), %rax    # 0x43dfa8
testq %rax, %rax
je 0x29eaed
retq
pushq %r15
pushq %r14
pushq %rbx
leaq 0x261(%rip), %rax       # 0x29ed5a
leaq 0x38a(%rip), %r10       # 0x29ee8a
leaq 0x8d0(%rip), %r11       # 0x29f3d7
leaq 0x711(%rip), %rbx       # 0x29f21f
leaq 0x8b5(%rip), %r14       # 0x29f3ca
leaq 0x721(%rip), %r15       # 0x29f23d
leaq 0x437(%rip), %rsi       # 0x29ef5a
leaq 0x8b3(%rip), %rdx       # 0x29f3dd
leaq 0x5d8(%rip), %rcx       # 0x29f109
leaq 0x253(%rip), %r8        # 0x29ed8b
leaq 0x77a(%rip), %r9        # 0x29f2b9
pushq $0x18
popq %rdi
pushq %rax
pushq %r10
pushq %r11
pushq %rbx
pushq %r14
pushq %r15
callq 0xf39c3
addq $0x30, %rsp
movq %rax, 0x19f44c(%rip)    # 0x43dfa8
popq %rbx
popq %r14
popq %r15
retq
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/intset_8.c
// Function: gt_intset_8_io
GtIntset *gt_intset_8_io(GtIntset *intset, FILE *fp, GtError *err)
{
  GtIntset8 *intset_8;
  if (intset == NULL) {
    intset = gt_intset_create(gt_intset_8_class());
    intset->members->sectionstart = NULL;
    intset->members->refcount = 0;
    intset_8 = gt_intset_8_cast(intset);
    intset_8->elements = NULL;
    intset = gt_intset_8_io_fp(intset, fp, err, gt_io_error_fread);
  }
  else {
    intset = gt_intset_8_io_fp(intset, fp, err, gt_io_error_fwrite);
  }
  return intset;
}

// Assembly:
pushq %r15
pushq %r14
pushq %rbx
movq %rdx, %rbx
movq %rsi, %r14
testq %rdi, %rdi
je 0x29eda4
leaq -0x1aaef2(%rip), %rcx   # 0xf3eb0
jmp 0x29ede0
callq 0x29eae0
movq %rax, %rdi
callq 0xf349c
movq %rax, %r15
movq 0x8(%rax), %rax
andq $0x0, (%rax)
andq $0x0, 0x40(%rax)
callq 0x29eae0
movq %rax, %rdi
movq %r15, %rsi
callq 0xf3576
andq $0x0, 0x10(%rax)
leaq -0x1aaef0(%rip), %rcx   # 0xf3eed
movq %r15, %rdi
movq %r14, %rsi
movq %rbx, %rdx
popq %rbx
popq %r14
popq %r15
jmp 0x29eb62
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/intset_8.c
// Function: gt_intset_8_write
GtIntset *gt_intset_8_write(GtIntset *intset, FILE *fp, GtError *err)
{
  gt_assert(intset != NULL);
  gt_assert(fp != NULL);
  gt_error_check(err);
  return gt_intset_8_io(intset, fp, err);
}

// Assembly:
pushq %r15
pushq %r14
pushq %rbx
testq %rdi, %rdi
je 0x29eec6
movq %rsi, %r14
testq %rsi, %rsi
je 0x29eef4
movq %rdx, %rbx
movq %rdi, %r15
testq %rdx, %rdx
je 0x29eeb3
movq %rbx, %rdi
callq 0x89eb7
testb %al, %al
jne 0x29ef22
movq %r15, %rdi
movq %r14, %rsi
movq %rbx, %rdx
popq %rbx
popq %r14
popq %r15
jmp 0x29ed8b
movq 0x19909b(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x4613c(%rip), %rsi     # 0x2e5013
leaq 0x86253(%rip), %rdx     # 0x325131
leaq 0xe0081(%rip), %rcx     # 0x37ef66
leaq 0xdfffd(%rip), %r8      # 0x37eee9
movl $0xcd, %r9d
jmp 0x29ef4e
movq 0x19906d(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x4610e(%rip), %rsi     # 0x2e5013
leaq 0x7a3a4(%rip), %rdx     # 0x3192b0
leaq 0xe0053(%rip), %rcx     # 0x37ef66
leaq 0xdffcf(%rip), %r8      # 0x37eee9
movl $0xce, %r9d
jmp 0x29ef4e
movq 0x19903f(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x460e0(%rip), %rsi     # 0x2e5013
leaq 0x46285(%rip), %rdx     # 0x2e51bf
leaq 0xe0025(%rip), %rcx     # 0x37ef66
leaq 0xdffa1(%rip), %r8      # 0x37eee9
movl $0xcf, %r9d
xorl %eax, %eax
callq 0x17a50
callq 0x17390
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/intset_8.c
// Function: gt_intset_8_add
void gt_intset_8_add(GtIntset *intset, GtUword elem)
{
  GtIntset8 *intset_8 = gt_intset_8_cast(intset);
  GtIntsetMembers *members = intset->members;
  GtUword *sectionstart = members->sectionstart;
  gt_assert(members->nextfree < members->num_of_elems);
  gt_assert(elem <= members->maxelement);
  gt_assert(members->previouselem == ULONG_MAX || members->previouselem < elem);
  while (elem >= GT_SECTIONMINELEM(members->currentsectionnum + 1)) {
    gt_assert(members->currentsectionnum < members->numofsections);
    sectionstart[members->currentsectionnum + 1] = members->nextfree;
    members->currentsectionnum++;
  }
  gt_assert(GT_SECTIONMINELEM(members->currentsectionnum) <= elem &&
            elem < GT_SECTIONMINELEM(members->currentsectionnum+1) &&
            GT_ELEM2SECTION_M(elem) == members->currentsectionnum);
  intset_8->elements[members->nextfree++] = (uint8_t) elem;
  members->previouselem = elem;
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
movq %rsi, %rbx
movq %rdi, %r14
callq 0x29eae0
movq %rax, %rdi
movq %r14, %rsi
callq 0xf3576
movq 0x8(%r14), %rdx
movq 0x20(%rdx), %rsi
cmpq 0x28(%rdx), %rsi
jae 0x29f04b
cmpq %rbx, 0x18(%rdx)
jb 0x29f079
movq 0x38(%rdx), %rcx
cmpq $-0x1, %rcx
setne %dil
cmpq %rbx, %rcx
setae %cl
testb %cl, %dil
jne 0x29f0a7
movq (%rdx), %r8
movq 0x10(%rdx), %rdi
leaq 0x1(%rdi), %r9
movq 0x8(%rdx), %rcx
shlq %cl, %r9
cmpq %rbx, %r9
ja 0x29efda
cmpq 0x30(%rdx), %rdi
jae 0x29f013
movq %rsi, 0x8(%r8,%rdi,8)
movq 0x10(%rdx), %rdi
incq %rdi
movq %rdi, 0x10(%rdx)
jmp 0x29efb2
movq %rdi, %r9
shlq %cl, %r9
movq %rbx, %r8
shrq %cl, %r8
cmpq %rbx, %r9
ja 0x29f0d8
cmpq %rdi, %r8
jne 0x29f0d8
movq 0x10(%rax), %rax
leaq 0x1(%rsi), %rcx
movq %rcx, 0x20(%rdx)
movb %bl, (%rax,%rsi)
movq %rbx, 0x38(%rdx)
addq $0x8, %rsp
popq %rbx
popq %r14
retq
movq 0x198f4e(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x45fef(%rip), %rsi     # 0x2e5013
leaq 0xdf598(%rip), %rdx     # 0x37e5c3
leaq 0xdff46(%rip), %rcx     # 0x37ef78
leaq 0xdfeb0(%rip), %r8      # 0x37eee9
movl $0xdc, %r9d
xorl %eax, %eax
callq 0x17a50
callq 0x17390
movq 0x198f16(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x45fb7(%rip), %rsi     # 0x2e5013
leaq 0xdf4c6(%rip), %rdx     # 0x37e529
leaq 0xdff0e(%rip), %rcx     # 0x37ef78
leaq 0xdfe78(%rip), %r8      # 0x37eee9
movl $0xd8, %r9d
jmp 0x29f03f
movq 0x198ee8(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x45f89(%rip), %rsi     # 0x2e5013
leaq 0xdf4d3(%rip), %rdx     # 0x37e564
leaq 0xdfee0(%rip), %rcx     # 0x37ef78
leaq 0xdfe4a(%rip), %r8      # 0x37eee9
movl $0xd9, %r9d
jmp 0x29f03f
movq 0x198eba(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x45f5b(%rip), %rsi     # 0x2e5013
leaq 0xdf4c1(%rip), %rdx     # 0x37e580
leaq 0xdfeb2(%rip), %rcx     # 0x37ef78
leaq 0xdfe1c(%rip), %r8      # 0x37eee9
movl $0xda, %r9d
jmp 0x29f03f
movq 0x198e89(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x45f2a(%rip), %rsi     # 0x2e5013
leaq 0xdf507(%rip), %rdx     # 0x37e5f7
leaq 0xdfe81(%rip), %rcx     # 0x37ef78
leaq 0xdfdeb(%rip), %r8      # 0x37eee9
movl $0xe2, %r9d
jmp 0x29f03f
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/intset_8.c
// Function: gt_intset_8_get
GtUword gt_intset_8_get(GtIntset *intset, GtUword idx)
{
  GtUword quotient;
  GtIntset8 *intset_8 = gt_intset_8_cast(intset);
  GtIntsetMembers *members = intset->members;
  GtUword *sectionstart = members->sectionstart;
  gt_assert(idx < members->nextfree);

  quotient = gt_intset_8_binarysearch_sec_idx_largest_leq(
                                      sectionstart,
                                      sectionstart + members->numofsections - 1,
                                      idx);
  return (quotient << members->logsectionsize) +
         intset_8->elements[idx];
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
movq %rsi, %rbx
movq %rdi, %r14
callq 0x29eae0
movq %rax, %rdi
movq %r14, %rsi
callq 0xf3576
movq 0x8(%r14), %rcx
cmpq %rbx, 0x20(%rcx)
jbe 0x29f1b9
movq (%rcx), %rsi
movq 0x30(%rcx), %rdx
leaq (%rsi,%rdx,8), %rdi
addq $-0x8, %rdi
xorl %edx, %edx
cmpq %rbx, (%rsi)
cmovbeq %rsi, %rdx
movq %rsi, %r8
cmpq %rdi, %r8
jae 0x29f179
movq %rdi, %r9
subq %r8, %r9
sarq $0x4, %r9
cmpq %rbx, (%r8,%r9,8)
jb 0x29f16b
leaq (%r8,%r9,8), %rdi
addq $-0x8, %rdi
jmp 0x29f14c
leaq (%r8,%r9,8), %rdx
leaq (%r8,%r9,8), %r8
addq $0x8, %r8
jmp 0x29f14c
testq %rdx, %rdx
je 0x29f1e7
movq %rdx, %rdi
subq %rsi, %rdi
addq $-0x8, %rdi
addq $0x8, %rdx
addq $0x8, %rdi
leaq 0x8(%rdx), %rsi
cmpq %rbx, (%rdx)
movq %rsi, %rdx
jbe 0x29f18c
sarq $0x3, %rdi
movb 0x8(%rcx), %cl
shlq %cl, %rdi
movq 0x10(%rax), %rax
movzbl (%rax,%rbx), %eax
addq %rdi, %rax
addq $0x8, %rsp
popq %rbx
popq %r14
retq
movq 0x198da8(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x45e49(%rip), %rsi     # 0x2e5013
leaq 0xdf4cf(%rip), %rdx     # 0x37e6a0
leaq 0xdfdb0(%rip), %rcx     # 0x37ef88
leaq 0xdfd0a(%rip), %r8      # 0x37eee9
movl $0x11d, %r9d            # imm = 0x11D
jmp 0x29f213
movq 0x198d7a(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x45e1b(%rip), %rsi     # 0x2e5013
leaq 0xa7749(%rip), %rdx     # 0x346948
leaq 0xe007e(%rip), %rcx     # 0x37f284
leaq 0xdfcdc(%rip), %r8      # 0x37eee9
movl $0x106, %r9d            # imm = 0x106
xorl %eax, %eax
callq 0x17a50
callq 0x17390
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/intset_8.c
// Function: gt_intset_8_is_member
bool gt_intset_8_is_member(GtIntset *intset, GtUword elem)
{
  GtIntset8 *intset_8 = gt_intset_8_cast(intset);
  GtIntsetMembers *members = intset->members;
  GtUword *sectionstart = members->sectionstart;
  if (elem <= members->maxelement)
  {
    const GtUword sectionnum = GT_ELEM2SECTION_M(elem);

    if (sectionstart[sectionnum] < sectionstart[sectionnum+1]) {
      return gt_intset_8_binarysearch_is_member(
                            intset_8->elements + sectionstart[sectionnum],
                            intset_8->elements + sectionstart[sectionnum+1] - 1,
                            (uint64_t) elem);
    }
  }
  return false;
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
movq %rsi, %rbx
movq %rdi, %r14
callq 0x29eae0
movq %rax, %rdi
movq %r14, %rsi
callq 0xf3576
movq 0x8(%r14), %rdx
cmpq %rbx, 0x18(%rdx)
jb 0x29f2af
movb 0x8(%rdx), %cl
movq %rbx, %rsi
shrq %cl, %rsi
movq (%rdx), %rdx
movq (%rdx,%rsi,8), %rcx
movq 0x8(%rdx,%rsi,8), %rdx
cmpq %rdx, %rcx
jae 0x29f2af
movq 0x10(%rax), %rax
addq %rax, %rcx
addq %rax, %rdx
movq %rdx, %rsi
decq %rsi
cmpq %rsi, %rcx
setbe %al
ja 0x29f2b1
movq %rsi, %rdi
subq %rcx, %rdi
sarq %rdi
leaq (%rcx,%rdi), %rdx
cmpb %bl, (%rcx,%rdi)
ja 0x29f285
jae 0x29f2b1
incq %rdx
movq %rdx, %rcx
jmp 0x29f28b
xorl %eax, %eax
addq $0x8, %rsp
popq %rbx
popq %r14
retq
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/intset_8.c
// Function: gt_intset_8_get_idx_smallest_geq
GtUword gt_intset_8_get_idx_smallest_geq(GtIntset *intset, GtUword value)
{
  GtIntset8 *intset_8 = gt_intset_8_cast(intset);
  GtIntsetMembers *members = intset->members;

  GtUword sectionnum = GT_ELEM2SECTION_M(value);

  if (value > members->previouselem)
    return members->num_of_elems;

  gt_assert(value <= members->maxelement);

  if (members->sectionstart[sectionnum] < members->sectionstart[sectionnum+1]) {
    return members->sectionstart[sectionnum] +
           gt_intset_8_binarysearch_idx_sm_geq(
                   intset_8->elements + members->sectionstart[sectionnum],
                   intset_8->elements + members->sectionstart[sectionnum+1] - 1,
                   (uint8_t) value);
  }
  return members->sectionstart[sectionnum];
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
movq %rsi, %rbx
movq %rdi, %r14
callq 0x29eae0
movq %rax, %rdi
movq %r14, %rsi
callq 0xf3576
movq 0x8(%r14), %rdx
movb 0x8(%rdx), %cl
movq %rbx, %rsi
shrq %cl, %rsi
cmpq %rbx, 0x38(%rdx)
jae 0x29f2ec
movq 0x28(%rdx), %rax
jmp 0x29f35c
cmpq %rbx, 0x18(%rdx)
jb 0x29f364
movq %rax, %rcx
movq (%rdx), %rdx
movq (%rdx,%rsi,8), %rax
movq 0x8(%rdx,%rsi,8), %rsi
cmpq %rsi, %rax
jae 0x29f35c
movq 0x10(%rcx), %rdx
leaq (%rdx,%rsi), %rcx
decq %rcx
addq %rax, %rdx
cmpq %rcx, %rdx
ja 0x29f392
cmpb %bl, (%rdx)
jae 0x29f329
cmpb %bl, (%rcx)
jae 0x29f32d
subq %rdx, %rcx
incq %rcx
jmp 0x29f359
xorl %ecx, %ecx
jmp 0x29f359
movq %rdx, %rsi
cmpq %rcx, %rsi
jae 0x29f353
movq %rcx, %rdi
subq %rsi, %rdi
sarq %rdi
cmpb %bl, (%rsi,%rdi)
jb 0x29f34b
addq %rsi, %rdi
movq %rdi, %rcx
jmp 0x29f330
addq %rdi, %rsi
incq %rsi
jmp 0x29f330
subq %rdx, %rsi
movq %rsi, %rcx
addq %rcx, %rax
addq $0x8, %rsp
popq %rbx
popq %r14
retq
movq 0x198bfd(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x45c9e(%rip), %rsi     # 0x2e5013
leaq 0xdf34d(%rip), %rdx     # 0x37e6c9
leaq 0xdfc15(%rip), %rcx     # 0x37ef98
leaq 0xdfb5f(%rip), %r8      # 0x37eee9
movl $0x19b, %r9d            # imm = 0x19B
jmp 0x29f3be
movq 0x198bcf(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x45c70(%rip), %rsi     # 0x2e5013
leaq 0xdf666(%rip), %rdx     # 0x37ea10
leaq 0xdff00(%rip), %rcx     # 0x37f2b1
leaq 0xdfb31(%rip), %r8      # 0x37eee9
movl $0x16b, %r9d            # imm = 0x16B
xorl %eax, %eax
callq 0x17a50
callq 0x17390
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/intset_8.c
// Function: gt_intset_8_get_test
static GtUword gt_intset_8_get_test(GtIntset *intset, GtUword idx)
{
  GtIntset8 *intset_8 = gt_intset_8_cast(intset);
  GtIntsetMembers *members = intset->members;
  GtUword *sectionstart = members->sectionstart;
  gt_assert(idx < members->nextfree);

  return (gt_intset_8_sec_idx_largest_leq(sectionstart, idx) <<
         members->logsectionsize) + intset_8->elements[idx];
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
movq %rsi, %rbx
movq %rdi, %r14
callq 0x29eae0
movq %rax, %rdi
movq %r14, %rsi
callq 0xf3576
movq 0x8(%r14), %rcx
cmpq %rbx, 0x20(%rcx)
jbe 0x29f9d3
movq (%rcx), %rsi
pushq $-0x2
popq %rdx
movq %rdx, %rdi
incq %rdx
cmpq %rbx, 0x10(%rsi,%rdi,8)
jbe 0x29f9ad
movb 0x8(%rcx), %cl
shlq %cl, %rdx
movq 0x10(%rax), %rax
movzbl (%rax,%rbx), %eax
addq %rdx, %rax
addq $0x8, %rsp
popq %rbx
popq %r14
retq
movq 0x19858e(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x4562f(%rip), %rsi     # 0x2e5013
leaq 0xdecb5(%rip), %rdx     # 0x37e6a0
leaq 0xdf8e3(%rip), %rcx     # 0x37f2d5
leaq 0xdf4f0(%rip), %r8      # 0x37eee9
movl $0x111, %r9d            # imm = 0x111
xorl %eax, %eax
callq 0x17a50
callq 0x17390
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/intset_8.c
// Function: gt_intset_8_get_idx_smallest_geq_test
static GtUword gt_intset_8_get_idx_smallest_geq_test(GtIntset *intset,
                                                      GtUword value)
{
  GtIntset8 *intset_8 = gt_intset_8_cast(intset);
  GtIntsetMembers *members = intset->members;

  GtUword sectionnum = GT_ELEM2SECTION_M(value);

  if (value > members->previouselem)
    return members->num_of_elems;

  gt_assert(value <= members->maxelement);
  if (members->sectionstart[sectionnum] < members->sectionstart[sectionnum+1]) {
    return members->sectionstart[sectionnum] +
           gt_intset_8_idx_sm_geq(
                   intset_8->elements + members->sectionstart[sectionnum],
                   intset_8->elements + members->sectionstart[sectionnum+1] - 1,
                   (uint8_t) value);
  }
  return members->sectionstart[sectionnum];
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
movq %rsi, %rbx
movq %rdi, %r14
callq 0x29eae0
movq %rax, %rdi
movq %r14, %rsi
callq 0xf3576
movq 0x8(%r14), %rdx
movb 0x8(%rdx), %cl
movq %rbx, %rsi
shrq %cl, %rsi
cmpq %rbx, 0x38(%rdx)
jae 0x29fa3e
movq 0x28(%rdx), %rax
jmp 0x29fa8e
cmpq %rbx, 0x18(%rdx)
jb 0x29fa96
movq %rax, %rcx
movq (%rdx), %rdx
movq (%rdx,%rsi,8), %rax
movq 0x8(%rdx,%rsi,8), %rsi
cmpq %rsi, %rax
jae 0x29fa8e
movq 0x10(%rcx), %rdx
cmpb %bl, (%rdx,%rax)
jbe 0x29fa65
xorl %ecx, %ecx
jmp 0x29fa8b
leaq (%rdx,%rsi), %rcx
decq %rcx
addq %rax, %rdx
cmpb %bl, (%rcx)
jae 0x29fa7b
subq %rdx, %rcx
incq %rcx
jmp 0x29fa8b
pushq $-0x1
popq %rsi
leaq 0x1(%rsi), %rcx
cmpb %bl, 0x1(%rdx,%rsi)
movq %rcx, %rsi
jb 0x29fa7e
addq %rcx, %rax
addq $0x8, %rsp
popq %rbx
popq %r14
retq
movq 0x1984cb(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x4556c(%rip), %rsi     # 0x2e5013
leaq 0xdec1b(%rip), %rdx     # 0x37e6c9
leaq 0xdf835(%rip), %rcx     # 0x37f2ea
leaq 0xdf42d(%rip), %r8      # 0x37eee9
movl $0x186, %r9d            # imm = 0x186
xorl %eax, %eax
callq 0x17a50
callq 0x17390
nop
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/type_checker_obo.c
// Function: gt_type_checker_obo_description
static const char* gt_type_checker_obo_description(GtTypeChecker *tc)
{
  GtTypeCheckerOBO *tco;
  gt_assert(tc);
  tco = gt_type_checker_obo_cast(tc);
  return gt_str_get(tco->description);
}

// Assembly:
pushq %rax
testq %rdi, %rdi
je 0x29faf7
movq %rdi, %rsi
leaq 0x197808(%rip), %rdi    # 0x4372f0
callq 0x12a8a8
movq 0x10(%rax), %rdi
popq %rax
jmp 0xad1fa
movq 0x19846a(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x4550b(%rip), %rsi     # 0x2e5013
leaq 0x94188(%rip), %rdx     # 0x333c97
leaq 0xdf84a(%rip), %rcx     # 0x37f360
leaq 0xdf80b(%rip), %r8      # 0x37f328
pushq $0x30
popq %r9
xorl %eax, %eax
callq 0x17a50
callq 0x17390
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/type_checker_obo.c
// Function: gt_type_checker_obo_is_valid
static bool gt_type_checker_obo_is_valid(GtTypeChecker *tc, const char *type)
{
  GtTypeCheckerOBO *tco;
  gt_assert(tc && type);
  tco = gt_type_checker_obo_cast(tc);
  return gt_cstr_table_get(tco->feature_node_types, type) ? true : false;
}

// Assembly:
pushq %rbx
testq %rdi, %rdi
je 0x29fb5e
movq %rsi, %rbx
testq %rsi, %rsi
je 0x29fb5e
movq %rdi, %rsi
leaq 0x1977ab(%rip), %rdi    # 0x4372f0
callq 0x12a8a8
movq 0x18(%rax), %rdi
movq %rbx, %rsi
callq 0x6cb9a
testq %rax, %rax
setne %al
popq %rbx
retq
movq 0x198403(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x454a4(%rip), %rsi     # 0x2e5013
leaq 0x97c0c(%rip), %rdx     # 0x337782
leaq 0xdf803(%rip), %rcx     # 0x37f380
leaq 0xdf7a4(%rip), %r8      # 0x37f328
pushq $0x38
popq %r9
xorl %eax, %eax
callq 0x17a50
callq 0x17390
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/type_checker_obo.c
// Function: gt_type_checker_obo_is_partof
static bool gt_type_checker_obo_is_partof(GtTypeChecker *tc,
                                          const char *parent_type,
                                          const char *child_type)
{
  GtTypeCheckerOBO *tco;
  gt_assert(tc && parent_type && child_type);
  tco = gt_type_checker_obo_cast(tc);
  return gt_type_graph_is_partof(tco->type_graph, parent_type, child_type);
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
testq %rdi, %rdi
je 0x29fbd2
movq %rsi, %r14
testq %rsi, %rsi
je 0x29fbd2
movq %rdx, %rbx
testq %rdx, %rdx
je 0x29fbd2
movq %rdi, %rsi
leaq 0x197739(%rip), %rdi    # 0x4372f0
callq 0x12a8a8
movq 0x20(%rax), %rdi
movq %r14, %rsi
movq %rbx, %rdx
addq $0x8, %rsp
popq %rbx
popq %r14
jmp 0x2a03cb
movq 0x19838f(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x45430(%rip), %rsi     # 0x2e5013
leaq 0x97c4c(%rip), %rdx     # 0x337836
leaq 0xdf7ac(%rip), %rcx     # 0x37f39d
leaq 0xdf730(%rip), %r8      # 0x37f328
pushq $0x42
popq %r9
xorl %eax, %eax
callq 0x17a50
callq 0x17390
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/type_checker_obo.c
// Function: gt_type_checker_obo_is_a
static bool gt_type_checker_obo_is_a(GtTypeChecker *tc,
                                          const char *parent_type,
                                          const char *child_type)
{
  GtTypeCheckerOBO *tco;
  gt_assert(tc && parent_type && child_type);
  tco = gt_type_checker_obo_cast(tc);
  return gt_type_graph_is_a(tco->type_graph, parent_type, child_type);
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
testq %rdi, %rdi
je 0x29fc46
movq %rsi, %r14
testq %rsi, %rsi
je 0x29fc46
movq %rdx, %rbx
testq %rdx, %rdx
je 0x29fc46
movq %rdi, %rsi
leaq 0x1976c5(%rip), %rdi    # 0x4372f0
callq 0x12a8a8
movq 0x20(%rax), %rdi
movq %r14, %rsi
movq %rbx, %rdx
addq $0x8, %rsp
popq %rbx
popq %r14
jmp 0x2a06d3
movq 0x19831b(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x453bc(%rip), %rsi     # 0x2e5013
leaq 0x97bd8(%rip), %rdx     # 0x337836
leaq 0xdf756(%rip), %rcx     # 0x37f3bb
leaq 0xdf6bc(%rip), %r8      # 0x37f328
pushq $0x4c
popq %r9
xorl %eax, %eax
callq 0x17a50
callq 0x17390
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/type_checker_obo.c
// Function: gt_type_checker_obo_free
static void gt_type_checker_obo_free(GtTypeChecker *tc)
{
  GtTypeCheckerOBO *tco = gt_type_checker_obo_cast(tc);
  gt_type_graph_delete(tco->type_graph);
  gt_cstr_table_delete(tco->feature_node_types);
  gt_str_delete(tco->description);
}

// Assembly:
pushq %rbx
movq %rdi, %rsi
leaq 0x197669(%rip), %rdi    # 0x4372f0
callq 0x12a8a8
movq %rax, %rbx
movq 0x20(%rax), %rdi
callq 0x29ffad
movq 0x18(%rbx), %rdi
callq 0x6cf6b
movq 0x10(%rbx), %rdi
popq %rbx
jmp 0xae103
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/type_checker_obo.c
// Function: add_feature_node_from_tree
static void add_feature_node_from_tree(GtTypeCheckerOBO *tco,
                                       GtOBOParseTree *obo_parse_tree,
                                       GtUword stanza_num,
                                       const char *stanza_key)
{
  const char *value;
  gt_assert(tco && obo_parse_tree && stanza_key);
  value = gt_obo_parse_tree_get_stanza_value(obo_parse_tree, stanza_num,
                                             stanza_key);
  /* do not add values multiple times (possible for "name" values) */
  if (!gt_cstr_table_get(tco->feature_node_types, value))
    gt_cstr_table_add(tco->feature_node_types, value);
  else
    puts(value);
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
testq %rcx, %rcx
je 0x29ff0e
movq %rdi, %rbx
movq %rsi, %rdi
movq %rdx, %rsi
movq %rcx, %rdx
callq 0x2df201
movq %rax, %r14
movq 0x18(%rbx), %rdi
movq %rax, %rsi
callq 0x6cb9a
testq %rax, %rax
je 0x29fefb
movq %r14, %rdi
addq $0x8, %rsp
popq %rbx
popq %r14
jmp 0x17b60
movq 0x18(%rbx), %rdi
movq %r14, %rsi
addq $0x8, %rsp
popq %rbx
popq %r14
jmp 0x6cacc
movq 0x198053(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x450f4(%rip), %rsi     # 0x2e5013
leaq 0xdf4c8(%rip), %rdx     # 0x37f3ee
leaq 0xdf4e5(%rip), %rcx     # 0x37f412
leaq 0xdf3f4(%rip), %r8      # 0x37f328
pushq $0x63
popq %r9
xorl %eax, %eax
callq 0x17a50
callq 0x17390
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/type_graph.c
// Function: gt_type_graph_new
GtTypeGraph* gt_type_graph_new(void)
{
  GtTypeGraph *type_graph = gt_malloc(sizeof (GtTypeGraph));
  type_graph->name2id = gt_hashmap_new(GT_HASH_DIRECT, NULL, NULL);
  type_graph->id2name = gt_hashmap_new(GT_HASH_DIRECT, NULL, NULL);
  type_graph->nodemap = gt_hashmap_new(GT_HASH_DIRECT, NULL, NULL);
  type_graph->nodes = gt_array_new(sizeof (GtTypeNode*));
  type_graph->part_of_out_edges = gt_bool_matrix_new();
  type_graph->part_of_in_edges = gt_bool_matrix_new();
  type_graph->ready = false;
  return type_graph;
}

// Assembly:
pushq %rbx
leaq 0xdf4e1(%rip), %rsi     # 0x37f42d
pushq $0x38
popq %rdi
pushq $0x2b
popq %rdx
callq 0x93160
movq %rax, %rbx
xorl %edi, %edi
xorl %esi, %esi
xorl %edx, %edx
callq 0x8f330
movq %rax, (%rbx)
xorl %edi, %edi
xorl %esi, %esi
xorl %edx, %edx
callq 0x8f330
movq %rax, 0x8(%rbx)
xorl %edi, %edi
xorl %esi, %esi
xorl %edx, %edx
callq 0x8f330
movq %rax, 0x10(%rbx)
pushq $0x8
popq %rdi
callq 0x5809c
movq %rax, 0x18(%rbx)
callq 0x2de3e0
movq %rax, 0x20(%rbx)
callq 0x2de3e0
movq %rax, 0x28(%rbx)
movb $0x0, 0x30(%rbx)
movq %rbx, %rax
popq %rbx
retq
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/type_graph.c
// Function: gt_type_graph_delete
void gt_type_graph_delete(GtTypeGraph *type_graph)
{
  GtUword i;
  if (!type_graph) return;
  gt_bool_matrix_delete(type_graph->part_of_in_edges);
  gt_bool_matrix_delete(type_graph->part_of_out_edges);
  for (i = 0; i < gt_array_size(type_graph->nodes); i++)
    gt_type_node_delete(*(GtTypeNode**) gt_array_get(type_graph->nodes, i));
  gt_array_delete(type_graph->nodes);
  gt_hashmap_delete(type_graph->nodemap);
  gt_hashmap_delete(type_graph->id2name);
  gt_hashmap_delete(type_graph->name2id);
  gt_free(type_graph);
}

// Assembly:
testq %rdi, %rdi
je 0x2a002d
pushq %r14
pushq %rbx
pushq %rax
movq %rdi, %rbx
movq 0x28(%rdi), %rdi
callq 0x2de757
movq 0x20(%rbx), %rdi
callq 0x2de757
xorl %r14d, %r14d
movq 0x18(%rbx), %rdi
callq 0x586a4
movq 0x18(%rbx), %rdi
cmpq %rax, %r14
jae 0x29fff5
movq %r14, %rsi
callq 0x581aa
movq (%rax), %rdi
callq 0x2a07ea
incq %r14
jmp 0x29ffce
callq 0x58eb9
movq 0x10(%rbx), %rdi
callq 0x8f933
movq 0x8(%rbx), %rdi
callq 0x8f933
movq (%rbx), %rdi
callq 0x8f933
leaq 0xdf412(%rip), %rsi     # 0x37f42d
pushq $0x42
popq %rdx
movq %rbx, %rdi
addq $0x8, %rsp
popq %rbx
popq %r14
jmp 0x936f9
retq
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/type_graph.c
// Function: gt_type_graph_is_partof
bool gt_type_graph_is_partof(GtTypeGraph *type_graph, const char *parent_type,
                             const char *child_type)
{
  const char *parent_id, *child_id;
  GtTypeNode *parent_node, *child_node;
  gt_assert(type_graph && parent_type && child_type);
  /* make sure graph is built */
  if (!type_graph->ready) {
    create_vertices(type_graph);
    type_graph->ready = true;
  }
  /* get parent ID, if the type is not mappable to an ID, assume it is the ID */
  if (!(parent_id = gt_hashmap_get(type_graph->name2id, parent_type)))
    parent_id = parent_type;
  /* get child ID, if the type is not mappable to an ID, assmue it is the ID */
  if (!(child_id = gt_hashmap_get(type_graph->name2id, child_type)))
    child_id = child_type;
  /* get parent node */
  parent_node = gt_hashmap_get(type_graph->nodemap, parent_id);
  gt_assert(parent_node);
  /* get child node */
  child_node = gt_hashmap_get(type_graph->nodemap, child_id);
  gt_assert(child_node);
  /* check for parent */
  return gt_type_node_has_parent(child_node, parent_node,
                                 type_graph->part_of_out_edges,
                                 type_graph->part_of_in_edges,
                                 type_graph->nodes, type_graph->id2name, 0);
}

// Assembly:
pushq %r15
pushq %r14
pushq %r12
pushq %rbx
pushq %rax
testq %rdi, %rdi
je 0x2a0484
movq %rsi, %r15
testq %rsi, %rsi
je 0x2a0484
movq %rdx, %r14
testq %rdx, %rdx
je 0x2a0484
movq %rdi, %rbx
cmpb $0x0, 0x30(%rdi)
jne 0x2a0409
movq %rbx, %rdi
callq 0x2a0518
movb $0x1, 0x30(%rbx)
movq (%rbx), %rdi
movq %r15, %rsi
callq 0x8f482
testq %rax, %rax
cmovneq %rax, %r15
movq (%rbx), %rdi
movq %r14, %rsi
callq 0x8f482
movq %rax, %r12
movq 0x10(%rbx), %rdi
movq %r15, %rsi
callq 0x8f482
testq %rax, %rax
je 0x2a04b2
movq %rax, %r15
testq %r12, %r12
cmovneq %r12, %r14
movq 0x10(%rbx), %rdi
movq %r14, %rsi
callq 0x8f482
testq %rax, %rax
je 0x2a04e0
movq 0x20(%rbx), %rdx
movq 0x28(%rbx), %rcx
movq 0x8(%rbx), %r9
movq 0x18(%rbx), %r8
andl $0x0, (%rsp)
movq %rax, %rdi
movq %r15, %rsi
callq 0x2a0b37
addq $0x8, %rsp
popq %rbx
popq %r12
popq %r14
popq %r15
retq
movq 0x197add(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x44b7e(%rip), %rsi     # 0x2e5013
leaq 0xdf09d(%rip), %rdx     # 0x37f539
leaq 0xdf0be(%rip), %rcx     # 0x37f561
leaq 0xdef83(%rip), %r8      # 0x37f42d
movl $0xa4, %r9d
jmp 0x2a050c
movq 0x197aaf(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x44b50(%rip), %rsi     # 0x2e5013
leaq 0xdf0af(%rip), %rdx     # 0x37f579
leaq 0xdf090(%rip), %rcx     # 0x37f561
leaq 0xdef55(%rip), %r8      # 0x37f42d
movl $0xb2, %r9d
jmp 0x2a050c
movq 0x197a81(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x44b22(%rip), %rsi     # 0x2e5013
leaq 0xdf08d(%rip), %rdx     # 0x37f585
leaq 0xdf062(%rip), %rcx     # 0x37f561
leaq 0xdef27(%rip), %r8      # 0x37f42d
movl $0xb5, %r9d
xorl %eax, %eax
callq 0x17a50
callq 0x17390
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/type_graph.c
// Function: gt_type_graph_is_a
bool gt_type_graph_is_a(GtTypeGraph *type_graph, const char *parent_type,
                        const char *child_type)
{
  const char *parent_id, *child_id;
  GtTypeNode *child_node;
  gt_assert(type_graph && parent_type && child_type);
  /* make sure graph is built */
  if (!type_graph->ready) {
    create_vertices(type_graph);
    type_graph->ready = true;
  }
  /* get parent ID, if the type is not mappable to an ID, assume it is the ID */
  if (!(parent_id = gt_hashmap_get(type_graph->name2id, parent_type)))
    parent_id = parent_type;
  /* get child ID, if the type is not mappable to an ID, assume it is the ID */
  if (!(child_id = gt_hashmap_get(type_graph->name2id, child_type)))
    child_id = child_type;
  /* get child node */
  child_node = gt_hashmap_get(type_graph->nodemap, child_id);
  gt_assert(child_node);
  /* check for parent */
  return gt_type_node_is_a(child_node, parent_id);
}

// Assembly:
pushq %r15
pushq %r14
pushq %r12
pushq %rbx
pushq %rax
testq %rdi, %rdi
je 0x2a0754
movq %rsi, %rbx
testq %rsi, %rsi
je 0x2a0754
movq %rdx, %r14
testq %rdx, %rdx
je 0x2a0754
movq %rdi, %r15
cmpb $0x0, 0x30(%rdi)
jne 0x2a0706
movq %r15, %rdi
callq 0x2a0518
movb $0x1, 0x30(%r15)
movq (%r15), %rdi
movq %rbx, %rsi
callq 0x8f482
movq %rax, %r12
movq (%r15), %rdi
movq %r14, %rsi
callq 0x8f482
testq %rax, %rax
cmovneq %rax, %r14
movq 0x10(%r15), %rdi
movq %r14, %rsi
callq 0x8f482
testq %rax, %rax
je 0x2a0782
testq %r12, %r12
cmovneq %r12, %rbx
movq %rax, %rdi
movq %rbx, %rsi
addq $0x8, %rsp
popq %rbx
popq %r12
popq %r14
popq %r15
jmp 0x2a0f3c
movq 0x19780d(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x448ae(%rip), %rsi     # 0x2e5013
leaq 0xdedcd(%rip), %rdx     # 0x37f539
leaq 0xdee1d(%rip), %rcx     # 0x37f590
leaq 0xdecb3(%rip), %r8      # 0x37f42d
movl $0xc2, %r9d
jmp 0x2a07ae
movq 0x1977df(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x44880(%rip), %rsi     # 0x2e5013
leaq 0xdedeb(%rip), %rdx     # 0x37f585
leaq 0xdedef(%rip), %rcx     # 0x37f590
leaq 0xdec85(%rip), %r8      # 0x37f42d
movl $0xd0, %r9d
xorl %eax, %eax
callq 0x17a50
callq 0x17390
nop
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/type_node.c
// Function: gt_type_node_new
GtTypeNode* gt_type_node_new(GtUword num, const char *id)
{
  GtTypeNode *node = gt_calloc(1, sizeof *node);
  node->num = num;
  node->id = id;
  return node;
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
movq %rsi, %rbx
movq %rdi, %r14
leaq 0xdedf7(%rip), %rdx     # 0x37f5c4
pushq $0x1
popq %rdi
pushq $0x38
popq %rsi
pushq $0x24
popq %rcx
callq 0x9334a
movq %r14, (%rax)
movq %rbx, 0x8(%rax)
addq $0x8, %rsp
popq %rbx
popq %r14
retq
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/type_node.c
// Function: gt_type_node_delete
void  gt_type_node_delete(GtTypeNode *type_node)
{
  if (!type_node) return;
  gt_hashmap_delete(type_node->cache);
  gt_array_delete(type_node->is_a_out_edges);
  gt_array_delete(type_node->part_of_list);
  gt_array_delete(type_node->is_a_list);
  gt_free(type_node);
}

// Assembly:
testq %rdi, %rdi
je 0x2a082a
pushq %rbx
movq %rdi, %rbx
movq 0x28(%rdi), %rdi
callq 0x8f933
movq 0x20(%rbx), %rdi
callq 0x58eb9
movq 0x18(%rbx), %rdi
callq 0x58eb9
movq 0x10(%rbx), %rdi
callq 0x58eb9
leaq 0xdeda6(%rip), %rsi     # 0x37f5c4
pushq $0x31
popq %rdx
movq %rbx, %rdi
popq %rbx
jmp 0x936f9
retq
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/type_node.c
// Function: gt_type_node_is_a_add
void gt_type_node_is_a_add(GtTypeNode *type_node, const char *id)
{
  gt_assert(type_node && id);
  if (!type_node->is_a_list)
    type_node->is_a_list = gt_array_new(sizeof (const char*));
  gt_array_add(type_node->is_a_list, id);
}

// Assembly:
pushq %rbx
subq $0x10, %rsp
movq %rsi, 0x8(%rsp)
testq %rdi, %rdi
je 0x2a08ad
testq %rsi, %rsi
je 0x2a08ad
movq %rdi, %rbx
movq 0x10(%rdi), %rdi
testq %rdi, %rdi
jne 0x2a089a
pushq $0x8
popq %rdi
callq 0x5809c
movq %rax, %rdi
movq %rax, 0x10(%rbx)
leaq 0x8(%rsp), %rsi
pushq $0x8
popq %rdx
callq 0x5851d
addq $0x10, %rsp
popq %rbx
retq
movq 0x1976b4(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x44755(%rip), %rsi     # 0x2e5013
leaq 0xded33(%rip), %rdx     # 0x37f5f8
leaq 0xded3c(%rip), %rcx     # 0x37f608
leaq 0xdecf1(%rip), %r8      # 0x37f5c4
pushq $0x3c
popq %r9
xorl %eax, %eax
callq 0x17a50
callq 0x17390
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/type_node.c
// Function: gt_type_node_part_of_add
void gt_type_node_part_of_add(GtTypeNode *type_node, const char *id)
{
  gt_assert(type_node && id);
  if (!type_node->part_of_list)
    type_node->part_of_list = gt_array_new(sizeof (const char*));
  gt_array_add(type_node->part_of_list, id);
}

// Assembly:
pushq %rbx
subq $0x10, %rsp
movq %rsi, 0x8(%rsp)
testq %rdi, %rdi
je 0x2a09d7
testq %rsi, %rsi
je 0x2a09d7
movq %rdi, %rbx
movq 0x18(%rdi), %rdi
testq %rdi, %rdi
jne 0x2a09c4
pushq $0x8
popq %rdi
callq 0x5809c
movq %rax, %rdi
movq %rax, 0x18(%rbx)
leaq 0x8(%rsp), %rsi
pushq $0x8
popq %rdx
callq 0x5851d
addq $0x10, %rsp
popq %rbx
retq
movq 0x19758a(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x4462b(%rip), %rsi     # 0x2e5013
leaq 0xdec09(%rip), %rdx     # 0x37f5f8
leaq 0xdec8a(%rip), %rcx     # 0x37f680
leaq 0xdebc7(%rip), %r8      # 0x37f5c4
pushq $0x51
popq %r9
xorl %eax, %eax
callq 0x17a50
callq 0x17390
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/type_node.c
// Function: gt_type_node_add_is_a_vertex
void gt_type_node_add_is_a_vertex(GtTypeNode *src, const GtTypeNode *dst)
{
  gt_assert(src && dst);
  if (!src->is_a_out_edges)
    src->is_a_out_edges = gt_array_new(sizeof (GtTypeNode*));
  gt_array_add(src->is_a_out_edges, dst);
}

// Assembly:
pushq %rbx
subq $0x10, %rsp
movq %rsi, 0x8(%rsp)
testq %rdi, %rdi
je 0x2a0b01
testq %rsi, %rsi
je 0x2a0b01
movq %rdi, %rbx
movq 0x20(%rdi), %rdi
testq %rdi, %rdi
jne 0x2a0aee
pushq $0x8
popq %rdi
callq 0x5809c
movq %rax, %rdi
movq %rax, 0x20(%rbx)
leaq 0x8(%rsp), %rsi
pushq $0x8
popq %rdx
callq 0x5851d
addq $0x10, %rsp
popq %rbx
retq
movq 0x197460(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x44501(%rip), %rsi     # 0x2e5013
leaq 0xdebeb(%rip), %rdx     # 0x37f704
leaq 0xdebef(%rip), %rcx     # 0x37f70f
leaq 0xdea9d(%rip), %r8      # 0x37f5c4
pushq $0x66
popq %r9
xorl %eax, %eax
callq 0x17a50
callq 0x17390
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/type_node.c
// Function: create_transitive_part_of_edges
static void create_transitive_part_of_edges(GtTypeNode *node,
                                            GtBoolMatrix *part_of_out_edges,
                                            GtBoolMatrix *part_of_in_edges,
                                            GtArray *node_stack)
{
  GtUword i, j;
  /* For every incoming part_of edge of the current node add a corresponding
     part_of edge to all nodes in the stack. Note that the current node is not
     part of the stack yet, therefore this is skipped on the first invocation.
   */
  if (gt_array_size(node_stack)) {
    for (i  = gt_bool_matrix_get_first_column(part_of_in_edges, node->num);
         i != gt_bool_matrix_get_last_column(part_of_in_edges, node->num);
         i  = gt_bool_matrix_get_next_column(part_of_in_edges, node->num, i)) {
      for (j = 0; j < gt_array_size(node_stack); j++) {
        GtTypeNode *child = *(GtTypeNode**) gt_array_get(node_stack, j);
        gt_bool_matrix_set(part_of_out_edges, i, child->num, true);
        gt_bool_matrix_set(part_of_in_edges, child->num, i, true);
      }
    }
  }
  /* add node to stack */
  gt_array_add(node_stack, node);
  /* call method recursively for all is_a edges of the current node */
  for (i = 0; i < gt_array_size(node->is_a_out_edges); i++) {
    GtTypeNode *parent = *(GtTypeNode**) gt_array_get(node->is_a_out_edges, i);
    create_transitive_part_of_edges(parent, part_of_out_edges, part_of_in_edges,
                                    node_stack);
  }
  /* pop node from stack */
  gt_array_pop(node_stack);
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
subq $0x18, %rsp
movq %rcx, %rbx
movq %rdx, %r14
movq %rsi, 0x8(%rsp)
movq %rdi, %r15
movq %rdi, (%rsp)
movq %rcx, %rdi
callq 0x586a4
testq %rax, %rax
je 0x2a0eda
movq (%r15), %rsi
movq %r14, %rdi
callq 0x2de5e0
movq %rax, %r13
pushq $0x1
popq %rbp
movq %r15, 0x10(%rsp)
movq (%r15), %rsi
movq %r14, %rdi
callq 0x2de65c
cmpq %rax, %r13
je 0x2a0eda
xorl %r12d, %r12d
movq %rbx, %rdi
callq 0x586a4
cmpq %rax, %r12
jae 0x2a0ec2
movq %rbx, %rdi
movq %r12, %rsi
callq 0x581aa
movq (%rax), %r15
movq (%r15), %rdx
movq 0x8(%rsp), %rdi
movq %r13, %rsi
movl %ebp, %ecx
callq 0x2de493
movq (%r15), %rsi
movq %r14, %rdi
movq %r13, %rdx
movl %ebp, %ecx
callq 0x2de493
incq %r12
jmp 0x2a0e80
movq 0x10(%rsp), %r15
movq (%r15), %rsi
movq %r14, %rdi
movq %r13, %rdx
callq 0x2de6d8
movq %rax, %r13
jmp 0x2a0e6d
movq %rsp, %rsi
pushq $0x8
popq %rdx
movq %rbx, %rdi
callq 0x5851d
xorl %r12d, %r12d
movq (%rsp), %rax
movq 0x20(%rax), %rdi
callq 0x586a4
cmpq %rax, %r12
jae 0x2a0f25
movq (%rsp), %rax
movq 0x20(%rax), %rdi
movq %r12, %rsi
callq 0x581aa
movq (%rax), %rdi
movq 0x8(%rsp), %rsi
movq %r14, %rdx
movq %rbx, %rcx
callq 0x2a0e26
incq %r12
jmp 0x2a0eeb
movq %rbx, %rdi
callq 0x58247
addq $0x18, %rsp
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
retq
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/type_node.c
// Function: gt_type_node_is_a
bool gt_type_node_is_a(GtTypeNode *child_node, const char *parent_id)
{
  GtUword i;
  gt_assert(child_node && parent_id);

  /* XXX: do path compression */
  if (!strcmp(child_node->id, parent_id))
    return true;
  for (i = 0; i < gt_array_size(child_node->is_a_out_edges); i++) {
    GtTypeNode *node = *(GtTypeNode**) gt_array_get(child_node->is_a_out_edges,
                                                    i);
    if (gt_type_node_is_a(node, parent_id))
      return true;
  }
  return false;
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %rbx
pushq %rax
testq %rdi, %rdi
je 0x2a0fa8
movq %rsi, %rbx
testq %rsi, %rsi
je 0x2a0fa8
movq %rdi, %r14
movq 0x8(%rdi), %rdi
movq %rbx, %rsi
callq 0x179e0
testl %eax, %eax
je 0x2a0f98
xorl %r15d, %r15d
movq 0x20(%r14), %rdi
callq 0x586a4
cmpq %rax, %r15
setb %bpl
jae 0x2a0f9b
movq 0x20(%r14), %rdi
movq %r15, %rsi
callq 0x581aa
movq (%rax), %rdi
movq %rbx, %rsi
callq 0x2a0f3c
incq %r15
testb %al, %al
je 0x2a0f66
jmp 0x2a0f9b
movb $0x1, %bpl
movl %ebp, %eax
addq $0x8, %rsp
popq %rbx
popq %r14
popq %r15
popq %rbp
retq
movq 0x196fb9(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x4405a(%rip), %rsi     # 0x2e5013
leaq 0xde807(%rip), %rdx     # 0x37f7c7
leaq 0xde818(%rip), %rcx     # 0x37f7df
leaq 0xde5f6(%rip), %r8      # 0x37f5c4
movl $0xf1, %r9d
xorl %eax, %eax
callq 0x17a50
callq 0x17390
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/match/apmeoveridx.c
// Function: apme_fullmatchLimdfsstate
static void apme_fullmatchLimdfsstate(Limdfsresult *limdfsresult,
                                      DECLAREPTRDFSSTATE(aliascolumn),
                                      GT_UNUSED GtUword leftbound,
                                      GT_UNUSED GtUword rightbound,
                                      GtUword width,
                                      GT_UNUSED GtUword currentdepth,
                                      Limdfsconstinfo *mt)
{
  ApmeoveridxLimdfsstate *col = (ApmeoveridxLimdfsstate *) aliascolumn;
  ApmeoveridxLimdfsconstinfo *mti = (ApmeoveridxLimdfsconstinfo *) mt;

  if (col->maxleqk == UNDEFMAXLEQK)
  {
    limdfsresult->status = Limdfsstop; /* stop depth first traversal */
    return;
  }
  if (mti->maxintervalwidth == 0 || width == (GtUword) 1)
  {
    if (col->maxleqk == SUCCESSMAXLEQK)
    {
      /* success with match of length plen */
      limdfsresult->status = Limdfssuccess;
      limdfsresult->pprefixlen = mti->patternlength;
      limdfsresult->distance = col->lastdistvalue;
      return;
    }
  } else
  {
    if (width <= (GtUword) mti->maxintervalwidth)
    {
      /* success with match of length maxleqk */
      gt_assert(col->maxleqk > 0);
      limdfsresult->status = Limdfssuccess;
      limdfsresult->pprefixlen = col->maxleqk;
      limdfsresult->distance = col->lastdistvalue;
      return;
    }
  }
  /* continue with depth first traversal */
  limdfsresult->status = Limdfscontinue;
}

// Assembly:
pushq %rax
movq 0x10(%rsp), %rdx
movq 0x10(%rsi), %rax
movq 0x10(%rdx), %rcx
leaq 0x1(%rcx), %r9
cmpq %r9, %rax
jne 0x2a6398
movl $0x2, (%rdi)
jmp 0x2a63d8
movq 0x8(%rdx), %rdx
testq %rdx, %rdx
setne %r9b
cmpq $0x1, %r8
setne %r10b
testb %r9b, %r10b
jne 0x2a63b7
cmpq %rcx, %rax
jne 0x2a63bc
jmp 0x2a63c9
cmpq %r8, %rdx
jae 0x2a63c4
movl $0x1, (%rdi)
jmp 0x2a63d8
testq %rax, %rax
je 0x2a63da
andl $0x0, (%rdi)
movq %rax, 0x8(%rdi)
movq 0x18(%rsi), %rax
movq %rax, 0x10(%rdi)
popq %rax
retq
movq 0x191b87(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x3ec28(%rip), %rsi     # 0x2e5013
leaq 0xda54a(%rip), %rdx     # 0x38093c
leaq 0xda554(%rip), %rcx     # 0x38094d
leaq 0xda4e8(%rip), %r8      # 0x3808e8
movl $0xfd, %r9d
xorl %eax, %eax
callq 0x17a50
callq 0x17390
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/match/diagband-struct.c
// Function: gt_diagband_struct_new
GtDiagbandStruct *gt_diagband_struct_new(GtUword amaxlen,GtUword bmaxlen,
                                         GtUword logdiagbandwidth)
{
  GtDiagbandStruct *diagband_struct = gt_malloc(sizeof *diagband_struct);

  diagband_struct->used_diagbands = 0;
  diagband_struct->num_diagbands
    = gt_diagband_struct_num_diagbands(amaxlen,bmaxlen,logdiagbandwidth);
  diagband_struct->amaxlen = amaxlen;
  diagband_struct->logdiagbandwidth = logdiagbandwidth;
  /* diagband_score[0] and diagband_score[num_diagbands+1] remain zero as
     boundaries */
  diagband_struct->score = gt_calloc(diagband_struct->num_diagbands + 2,
                                     sizeof *diagband_struct->score);
  diagband_struct->score++; /* so we need not increment the index when
                               accessing score */
  diagband_struct->lastpos
    = gt_calloc(diagband_struct->num_diagbands,
                sizeof *diagband_struct->lastpos);
  diagband_struct->reset_from_matches = 0;
  diagband_struct->reset_with_memset = 0;
  return diagband_struct;
}

// Assembly:
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
movq %rdx, %r15
movq %rsi, %r12
movq %rdi, %r13
leaq 0xda2e9(%rip), %rbx     # 0x380a31
pushq $0x40
popq %rdi
pushq $0x37
popq %rdx
movq %rbx, %rsi
callq 0x93160
movq %rax, %r14
andq $0x0, 0x18(%rax)
addq %r13, %r12
movl %r15d, %ecx
shrq %cl, %r12
leaq 0x1(%r12), %rax
movq %rax, 0x10(%r14)
movq %r13, (%r14)
movq %r15, 0x8(%r14)
addq $0x3, %r12
pushq $0x4
popq %r15
pushq $0x41
popq %rcx
movq %r12, %rdi
movq %r15, %rsi
movq %rbx, %rdx
callq 0x9334a
addq $0x4, %rax
movq %rax, 0x30(%r14)
movq 0x10(%r14), %rdi
pushq $0x46
popq %rcx
movq %r15, %rsi
movq %rbx, %rdx
callq 0x9334a
movq %rax, 0x38(%r14)
xorps %xmm0, %xmm0
movups %xmm0, 0x20(%r14)
movq %r14, %rax
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
retq