// File: /workspace/github_c_makefile_star2_O0/genometools[P]genometools/src/tools/gt_tallymer.c
// Function: gt_tyr_occratio_option_parser_new
static GtOptionParser *gt_tyr_occratio_option_parser_new(void *tool_arguments)
{
  GtOptionParser *op;
  GtOption *optionmersizes, *optionesa, *optionminmersize, *optionmaxmersize,
           *optionstep, *optionoutput, *option;
  Tyr_occratio_options *arguments = tool_arguments;

  op = gt_option_parser_new("[options] -esa suffixerator-index [options]",
                            "Compute occurrence ratio for a set of sequences "
                            "represented by an enhanced suffix array.");
  gt_option_parser_set_mail_address(op, "<kurtz@zbh.uni-hamburg.de>");

  optionesa = gt_option_new_string("esa","specify suffixerator-index\n"
                                   "(mandatory option)",
                                   arguments->str_inputindex,
                                   NULL);
  gt_option_is_mandatory(optionesa);
  gt_option_parser_add_option(op, optionesa);

  optionminmersize
    = gt_option_new_uword_min("minmersize",
                              "specify minimum mer size for which "
                              "to compute the occurrence distribution",
                              &arguments->minmersize,0,1UL);
  gt_option_parser_add_option(op, optionminmersize);

  optionmaxmersize
    = gt_option_new_uword_min("maxmersize",
                              "specify maximum mer size for which "
                              "to compute the occurrence distribution",
                              &arguments->maxmersize,0,1UL);
  gt_option_parser_add_option(op, optionmaxmersize);

  optionstep
    = gt_option_new_uword_min("step",
                              "specify step size when specifying mer sizes",
                              &arguments->stepmersize,1UL,1UL);
  gt_option_parser_add_option(op, optionstep);

  optionmersizes = gt_option_new_string_array(
                          "mersizes",
                          "specify mer sizes as non-empty sequence of "
                          "non decreasing positive integers",
                          arguments->mersizesstrings);
  arguments->refoptionmersizes = gt_option_ref(optionmersizes);
  gt_option_parser_add_option(op, optionmersizes);

  optionoutput = gt_option_new_string_array(
                          "output",
                          "use combination of the following keywords: "
                          "unique nonunique nonuniquemulti relative total "
                          "to specify kind of output",
                          arguments->outputspec);
  gt_option_parser_add_option(op, optionoutput);

  option = gt_option_new_bool("scan",
                              "read suffixerator-index sequentially "
                              "instead of mapping it to memory",
                              &arguments->scanfile,
                              false);
  gt_option_parser_add_option(op, option);

  option = gt_option_new_verbose(&arguments->verbose);
  gt_option_parser_add_option(op, option);

  gt_option_exclude(optionmersizes,optionminmersize);
  gt_option_exclude(optionmersizes,optionmaxmersize);
  gt_option_exclude(optionmersizes,optionstep);
  return op;
}

// Assembly:
subq $0x58, %rsp
movq %rdi, 0x50(%rsp)
movq 0x50(%rsp), %rax
movq %rax, 0x8(%rsp)
leaq 0x4b3daf(%rip), %rdi    # 0x52d929
leaq 0x4b40df(%rip), %rsi    # 0x52dc60
callq 0xf1420
movq %rax, 0x48(%rsp)
movq 0x48(%rsp), %rdi
leaq 0x49d74d(%rip), %rsi    # 0x5172e4
callq 0xf1a10
movq 0x8(%rsp), %rax
movq 0x10(%rax), %rdx
leaq 0x4b119c(%rip), %rdi    # 0x52ad48
leaq 0x4b3df4(%rip), %rsi    # 0x52d9a7
xorl %eax, %eax
movl %eax, %ecx
callq 0xf69f0
movq %rax, 0x38(%rsp)
movq 0x38(%rsp), %rdi
callq 0xf6ca0
movq 0x48(%rsp), %rdi
movq 0x38(%rsp), %rsi
callq 0xf1600
movq 0x8(%rsp), %rdx
addq $0x20, %rdx
leaq 0x4b40cf(%rip), %rdi    # 0x52dcb9
leaq 0x4b40d3(%rip), %rsi    # 0x52dcc4
xorl %eax, %eax
movl %eax, %ecx
movl $0x1, %r8d
callq 0xf66b0
movq %rax, 0x30(%rsp)
movq 0x48(%rsp), %rdi
movq 0x30(%rsp), %rsi
callq 0xf1600
movq 0x8(%rsp), %rdx
addq $0x28, %rdx
leaq 0x4b40ea(%rip), %rdi    # 0x52dd0e
leaq 0x4b40ee(%rip), %rsi    # 0x52dd19
xorl %eax, %eax
movl %eax, %ecx
movl $0x1, %r8d
callq 0xf66b0
movq %rax, 0x28(%rsp)
movq 0x48(%rsp), %rdi
movq 0x28(%rsp), %rsi
callq 0xf1600
movq 0x8(%rsp), %rdx
addq $0x30, %rdx
leaq 0x51a207(%rip), %rdi    # 0x593e65
leaq 0x4b40fe(%rip), %rsi    # 0x52dd63
movl $0x1, %r8d
movq %r8, %rcx
callq 0xf66b0
movq %rax, 0x20(%rsp)
movq 0x48(%rsp), %rdi
movq 0x20(%rsp), %rsi
callq 0xf1600
movq 0x8(%rsp), %rax
movq (%rax), %rdx
leaq 0x4b40f9(%rip), %rdi    # 0x52dd8f
leaq 0x4b40fb(%rip), %rsi    # 0x52dd98
callq 0xf6a50
movq %rax, 0x40(%rsp)
movq 0x40(%rsp), %rdi
callq 0xf13c0
movq %rax, %rcx
movq 0x8(%rsp), %rax
movq %rcx, 0x18(%rax)
movq 0x48(%rsp), %rdi
movq 0x40(%rsp), %rsi
callq 0xf1600
movq 0x8(%rsp), %rax
movq 0x8(%rax), %rdx
leaq 0x4c3fa3(%rip), %rdi    # 0x53dc7f
leaq 0x4b4101(%rip), %rsi    # 0x52dde4
callq 0xf6a50
movq %rax, 0x18(%rsp)
movq 0x48(%rsp), %rdi
movq 0x18(%rsp), %rsi
callq 0xf1600
movq 0x8(%rsp), %rdx
addq $0x44, %rdx
leaq 0x4a484a(%rip), %rdi    # 0x51e556
leaq 0x4b4145(%rip), %rsi    # 0x52de58
xorl %ecx, %ecx
callq 0xf5f20
movq %rax, 0x10(%rsp)
movq 0x48(%rsp), %rdi
movq 0x10(%rsp), %rsi
callq 0xf1600
movq 0x8(%rsp), %rdi
addq $0x45, %rdi
callq 0xf5f90
movq %rax, 0x10(%rsp)
movq 0x48(%rsp), %rdi
movq 0x10(%rsp), %rsi
callq 0xf1600
movq 0x40(%rsp), %rdi
movq 0x30(%rsp), %rsi
callq 0xf7320
movq 0x40(%rsp), %rdi
movq 0x28(%rsp), %rsi
callq 0xf7320
movq 0x40(%rsp), %rdi
movq 0x20(%rsp), %rsi
callq 0xf7320
movq 0x48(%rsp), %rax
addq $0x58, %rsp
retq
nopw (%rax,%rax)