// File: /workspace/github_cpp_makefile_star2_O2/ncbi[P]amr/alignment.cpp
// Function: Alignment_sp::AmrMutation::AmrMutation(unsigned long, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char>> const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char>> const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char>> const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char>> const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char>> const&)
AmrMutation::AmrMutation (size_t pos_real_arg,
            		 				  const string &geneMutation_std_arg,
            		 				  const string &geneMutation_arg,
                  				const string &class_arg,
                  				const string &subclass_arg,
                  				const string &name_arg)
: pos_real (pos_real_arg)
, geneMutation_std (geneMutation_std_arg)
, geneMutation     (geneMutation_arg)
, classS (class_arg)
, subclass (subclass_arg)
, name (name_arg)
{ 
  QC_ASSERT (pos_real > 0);
	pos_real--;
	
	QC_ASSERT (! name. empty ());
  QC_ASSERT (! contains (name, '\t'));
  replace (name, '_', ' ');
  QC_ASSERT (! contains (name, "  "));
  
  // reference, allele
	parse (geneMutation_std, reference, allele, gene, pos_std, frameshift, frameshift_insertion);
	if (allele == "STOP")
	  allele = "*";
	else if (allele == "del")
	  allele. clear ();
	  
	qc ();
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
subq $0x138, %rsp            # imm = 0x138
movq %r9, %r12
movq %r8, %r14
movq %rcx, %rbp
movq %rdi, %r13
leaq 0x4c8e0(%rip), %rax     # 0x88720
movq %rax, (%rdi)
movq %rsi, 0x8(%rdi)
leaq 0x10(%rdi), %rbx
movq %rbx, %rdi
movq %rdx, %rsi
callq 0xc7e0
leaq 0x40(%r13), %rax
movq %rax, 0x30(%r13)
andq $0x0, 0x38(%r13)
xorl %eax, %eax
movb %al, 0x40(%r13)
leaq 0x60(%r13), %rcx
movq %rcx, 0x50(%r13)
andq $0x0, 0x58(%r13)
leaq 0x30(%r13), %rcx
movq %rcx, 0x58(%rsp)
leaq 0x50(%r13), %r15
movb %al, 0x60(%r13)
leaq 0x80(%r13), %rcx
movq %rcx, 0x70(%r13)
andq $0x0, 0x78(%r13)
movb %al, 0x80(%r13)
andl $0x0, 0x90(%r13)
leaq 0x70(%r13), %rax
movq %rax, 0x50(%rsp)
orq $-0x1, 0x98(%r13)
andl $0x0, 0xa0(%r13)
leaq 0xa8(%r13), %rdi
movq %rdi, 0x130(%rsp)
movq %rbp, %rsi
callq 0xc7e0
leaq 0xc8(%r13), %rbp
movq %rbp, %rdi
movq %r14, %rsi
callq 0xc7e0
leaq 0xe8(%r13), %rdi
movq %rdi, 0x120(%rsp)
movq %r12, %rsi
movq %rbp, 0x128(%rsp)
callq 0xc7e0
movq 0x170(%rsp), %rsi
leaq 0x108(%r13), %r12
movq %r12, %rdi
callq 0xc7e0
callq 0xc070
movq %rax, %rbp
andl $0x0, (%rax)
movq 0x8(%r13), %rax
testq %rax, %rax
je 0x3c039
decq %rax
movq %rax, 0x8(%r13)
andl $0x0, (%rbp)
cmpq $0x0, 0x110(%r13)
je 0x3c111
pushq $0x9
popq %rsi
movq %r12, %rdi
callq 0x29e49
testb %al, %al
jne 0x3c1e9
pushq $0x5f
popq %rsi
pushq $0x20
popq %rdx
movq %r12, %rdi
callq 0x113a3
andl $0x0, (%rbp)
leaq 0x2482b(%rip), %rsi     # 0x607a6
leaq 0x10(%rsp), %rdi
leaq 0x30(%rsp), %rdx
callq 0xdbbe
leaq 0x10(%rsp), %rbp
movq %r12, %rdi
movq %rbp, %rsi
callq 0x29fee
movl %eax, %r14d
movq %rbp, %rdi
callq 0xcbe8
testb %r14b, %r14b
jne 0x3c2c1
leaq 0x90(%r13), %r8
leaq 0x98(%r13), %r9
leaq 0xa0(%r13), %rax
movq %rax, (%rsp)
movq %rbx, %rdi
movq 0x58(%rsp), %rsi
movq %r15, %rdx
movq 0x50(%rsp), %rcx
callq 0x3c4d4
leaq 0x260d8(%rip), %rsi     # 0x620bb
movq %r15, %rdi
callq 0x2a6be
testb %al, %al
je 0x3c000
leaq 0x2288e(%rip), %rsi     # 0x5e884
movq %r15, %rdi
callq 0xcb40
jmp 0x3c01f
leaq 0x260b9(%rip), %rsi     # 0x620c0
movq %r15, %rdi
callq 0x2a6be
testb %al, %al
je 0x3c01f
andq $0x0, 0x58(%r13)
movq 0x50(%r13), %rax
movb $0x0, (%rax)
movq %r13, %rdi
callq 0x3d4ca
addq $0x138, %rsp            # imm = 0x138
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
retq
callq 0xc6d0
testl %eax, %eax
jne 0x3c399
leaq 0x25f9b(%rip), %rsi     # 0x61fe8
leaq 0xc0(%rsp), %rdi
leaq 0xf(%rsp), %rdx
callq 0xdbbe
leaq 0xa0(%rsp), %rdi
pushq $0x3f
popq %rsi
callq 0xe2d5
leaq 0xe0(%rsp), %rdi
leaq 0xc0(%rsp), %rsi
leaq 0xa0(%rsp), %rdx
callq 0xe26e
leaq 0x2213e(%rip), %rdx     # 0x5e1d1
leaq 0x100(%rsp), %rdi
leaq 0xe0(%rsp), %rsi
callq 0xe24f
leaq 0x25f50(%rip), %rsi     # 0x61fff
leaq 0x60(%rsp), %rdi
leaq 0xe(%rsp), %rdx
callq 0xdbbe
leaq 0x22807(%rip), %rdx     # 0x5e8cc
leaq 0x80(%rsp), %rdi
leaq 0x60(%rsp), %rsi
callq 0xe24f
leaq 0x30(%rsp), %rdi
leaq 0x100(%rsp), %rsi
leaq 0x80(%rsp), %rdx
callq 0xe26e
leaq 0x25f86(%rip), %rdx     # 0x6207e
leaq 0x10(%rsp), %rdi
leaq 0x30(%rsp), %rsi
callq 0xe24f
leaq 0x10(%rsp), %rdi
callq 0x101d0
callq 0xc6d0
testl %eax, %eax
jne 0x3c399
leaq 0x25ec3(%rip), %rsi     # 0x61fe8
leaq 0xc0(%rsp), %rdi
leaq 0xf(%rsp), %rdx
callq 0xdbbe
leaq 0xa0(%rsp), %rdi
pushq $0x42
popq %rsi
callq 0xe2d5
leaq 0xe0(%rsp), %rdi
leaq 0xc0(%rsp), %rsi
leaq 0xa0(%rsp), %rdx
callq 0xe26e
leaq 0x22066(%rip), %rdx     # 0x5e1d1
leaq 0x100(%rsp), %rdi
leaq 0xe0(%rsp), %rsi
callq 0xe24f
leaq 0x25e78(%rip), %rsi     # 0x61fff
leaq 0x60(%rsp), %rdi
leaq 0xe(%rsp), %rdx
callq 0xdbbe
leaq 0x2272f(%rip), %rdx     # 0x5e8cc
leaq 0x80(%rsp), %rdi
leaq 0x60(%rsp), %rsi
callq 0xe24f
leaq 0x30(%rsp), %rdi
leaq 0x100(%rsp), %rsi
leaq 0x80(%rsp), %rdx
callq 0xe26e
leaq 0x23528(%rip), %rdx     # 0x5f6f8
leaq 0x10(%rsp), %rdi
leaq 0x30(%rsp), %rsi
callq 0xe24f
leaq 0x10(%rsp), %rdi
callq 0x101d0
callq 0xc6d0
testl %eax, %eax
jne 0x3c399
leaq 0x25deb(%rip), %rsi     # 0x61fe8
leaq 0xc0(%rsp), %rdi
leaq 0xf(%rsp), %rdx
callq 0xdbbe
leaq 0xa0(%rsp), %rdi
pushq $0x43
popq %rsi
callq 0xe2d5
leaq 0xe0(%rsp), %rdi
leaq 0xc0(%rsp), %rsi
leaq 0xa0(%rsp), %rdx
callq 0xe26e
leaq 0x21f8e(%rip), %rdx     # 0x5e1d1
leaq 0x100(%rsp), %rdi
leaq 0xe0(%rsp), %rsi
callq 0xe24f
leaq 0x25da0(%rip), %rsi     # 0x61fff
leaq 0x60(%rsp), %rdi
leaq 0xe(%rsp), %rdx
callq 0xdbbe
leaq 0x22657(%rip), %rdx     # 0x5e8cc
leaq 0x80(%rsp), %rdi
leaq 0x60(%rsp), %rsi
callq 0xe24f
leaq 0x30(%rsp), %rdi
leaq 0x100(%rsp), %rsi
leaq 0x80(%rsp), %rdx
callq 0xe26e
leaq 0x25de3(%rip), %rdx     # 0x6208b
leaq 0x10(%rsp), %rdi
leaq 0x30(%rsp), %rsi
callq 0xe24f
leaq 0x10(%rsp), %rdi
callq 0x101d0
callq 0xc6d0
testl %eax, %eax
jne 0x3c399
leaq 0x25d13(%rip), %rsi     # 0x61fe8
leaq 0xc0(%rsp), %rdi
leaq 0xf(%rsp), %rdx
callq 0xdbbe
leaq 0xa0(%rsp), %rdi
pushq $0x45
popq %rsi
callq 0xe2d5
leaq 0xe0(%rsp), %rdi
leaq 0xc0(%rsp), %rsi
leaq 0xa0(%rsp), %rdx
callq 0xe26e
leaq 0x21eb6(%rip), %rdx     # 0x5e1d1
leaq 0x100(%rsp), %rdi
leaq 0xe0(%rsp), %rsi
callq 0xe24f
leaq 0x25cc8(%rip), %rsi     # 0x61fff
leaq 0x60(%rsp), %rdi
leaq 0xe(%rsp), %rdx
callq 0xdbbe
leaq 0x2257f(%rip), %rdx     # 0x5e8cc
leaq 0x80(%rsp), %rdi
leaq 0x60(%rsp), %rsi
callq 0xe24f
leaq 0x30(%rsp), %rdi
leaq 0x100(%rsp), %rsi
leaq 0x80(%rsp), %rdx
callq 0xe26e
leaq 0x25d23(%rip), %rdx     # 0x620a3
leaq 0x10(%rsp), %rdi
leaq 0x30(%rsp), %rsi
callq 0xe24f
leaq 0x10(%rsp), %rdi
callq 0x101d0
pushq $0x1
popq %rdi
callq 0xc6f0
jmp 0x3c3ad
jmp 0x3c3bc
jmp 0x3c3ad
jmp 0x3c3bc
jmp 0x3c3ad
jmp 0x3c3bc
movq %rax, %r14
leaq 0x10(%rsp), %rdi
callq 0xcbe8
jmp 0x3c3bf
movq %rax, %r14
leaq 0x30(%rsp), %rdi
callq 0xcbe8
jmp 0x3c3d4
jmp 0x3c3d1
jmp 0x3c3d1
jmp 0x3c3d1
movq %rax, %r14
leaq 0x80(%rsp), %rdi
callq 0xcbe8
jmp 0x3c3ec
jmp 0x3c3e9
jmp 0x3c3e9
jmp 0x3c3e9
movq %rax, %r14
leaq 0x60(%rsp), %rdi
callq 0xcbe8
jmp 0x3c401
jmp 0x3c3fe
jmp 0x3c3fe
jmp 0x3c3fe
movq %rax, %r14
leaq 0x100(%rsp), %rdi
callq 0xcbe8
jmp 0x3c419
jmp 0x3c416
jmp 0x3c416
jmp 0x3c416
movq %rax, %r14
leaq 0xe0(%rsp), %rdi
callq 0xcbe8
jmp 0x3c431
jmp 0x3c42e
jmp 0x3c42e
jmp 0x3c42e
movq %rax, %r14
leaq 0xa0(%rsp), %rdi
callq 0xcbe8
jmp 0x3c449
jmp 0x3c446
jmp 0x3c446
jmp 0x3c446
movq %rax, %r14
leaq 0xc0(%rsp), %rdi
callq 0xcbe8
jmp 0x3c479
jmp 0x3c476
jmp 0x3c476
jmp 0x3c476
jmp 0x3c476
jmp 0x3c476
movq %rax, %r14
jmp 0x3c481
movq %rax, %r14
jmp 0x3c48e
movq %rax, %r14
jmp 0x3c49b
movq %rax, %r14
jmp 0x3c4a8
movq %rax, %r14
movq %r12, %rdi
callq 0xcbe8
movq 0x120(%rsp), %rdi
callq 0xcbe8
movq 0x128(%rsp), %rdi
callq 0xcbe8
movq 0x130(%rsp), %rdi
callq 0xcbe8
movq 0x50(%rsp), %rdi
callq 0xcbe8
movq %r15, %rdi
callq 0xcbe8
movq 0x58(%rsp), %rdi
callq 0xcbe8
movq %rbx, %rdi
callq 0xcbe8
movq %r14, %rdi
callq 0xcaa0