// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/tools/gt_tallymer.c
// Function: gt_tyr_occratio_option_parser_new
static GtOptionParser *gt_tyr_occratio_option_parser_new(void *tool_arguments)
{
  GtOptionParser *op;
  GtOption *optionmersizes, *optionesa, *optionminmersize, *optionmaxmersize,
           *optionstep, *optionoutput, *option;
  Tyr_occratio_options *arguments = tool_arguments;

  op = gt_option_parser_new("[options] -esa suffixerator-index [options]",
                            "Compute occurrence ratio for a set of sequences "
                            "represented by an enhanced suffix array.");
  gt_option_parser_set_mail_address(op, "<kurtz@zbh.uni-hamburg.de>");

  optionesa = gt_option_new_string("esa","specify suffixerator-index\n"
                                   "(mandatory option)",
                                   arguments->str_inputindex,
                                   NULL);
  gt_option_is_mandatory(optionesa);
  gt_option_parser_add_option(op, optionesa);

  optionminmersize
    = gt_option_new_uword_min("minmersize",
                              "specify minimum mer size for which "
                              "to compute the occurrence distribution",
                              &arguments->minmersize,0,1UL);
  gt_option_parser_add_option(op, optionminmersize);

  optionmaxmersize
    = gt_option_new_uword_min("maxmersize",
                              "specify maximum mer size for which "
                              "to compute the occurrence distribution",
                              &arguments->maxmersize,0,1UL);
  gt_option_parser_add_option(op, optionmaxmersize);

  optionstep
    = gt_option_new_uword_min("step",
                              "specify step size when specifying mer sizes",
                              &arguments->stepmersize,1UL,1UL);
  gt_option_parser_add_option(op, optionstep);

  optionmersizes = gt_option_new_string_array(
                          "mersizes",
                          "specify mer sizes as non-empty sequence of "
                          "non decreasing positive integers",
                          arguments->mersizesstrings);
  arguments->refoptionmersizes = gt_option_ref(optionmersizes);
  gt_option_parser_add_option(op, optionmersizes);

  optionoutput = gt_option_new_string_array(
                          "output",
                          "use combination of the following keywords: "
                          "unique nonunique nonuniquemulti relative total "
                          "to specify kind of output",
                          arguments->outputspec);
  gt_option_parser_add_option(op, optionoutput);

  option = gt_option_new_bool("scan",
                              "read suffixerator-index sequentially "
                              "instead of mapping it to memory",
                              &arguments->scanfile,
                              false);
  gt_option_parser_add_option(op, option);

  option = gt_option_new_verbose(&arguments->verbose);
  gt_option_parser_add_option(op, option);

  gt_option_exclude(optionmersizes,optionminmersize);
  gt_option_exclude(optionmersizes,optionmaxmersize);
  gt_option_exclude(optionmersizes,optionstep);
  return op;
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
pushq %rax
movq %rdi, %r14
leaq 0x2a8a1f(%rip), %rdi    # 0x2fc731
leaq 0x2a8d1d(%rip), %rsi    # 0x2fca36
callq 0x97df5
movq %rax, %rbx
leaq 0x2925a4(%rip), %rsi    # 0x2e62cc
movq %rax, %rdi
callq 0x98288
movq 0x10(%r14), %rdx
leaq 0x2a5ec2(%rip), %rdi    # 0x2f9bfd
leaq 0x2a8a6d(%rip), %rsi    # 0x2fc7af
xorl %ecx, %ecx
callq 0x9ad12
movq %rax, %r15
movq %rax, %rdi
callq 0x9ae37
movq %rbx, %rdi
movq %r15, %rsi
callq 0x97f31
leaq 0x20(%r14), %rdx
leaq 0x2a8d25(%rip), %rdi    # 0x2fca8f
leaq 0x2a8d29(%rip), %rsi    # 0x2fca9a
pushq $0x1
popq %r13
xorl %ecx, %ecx
movq %r13, %r8
callq 0x9ac58
movq %rax, %r15
movq %rbx, %rdi
movq %rax, %rsi
callq 0x97f31
leaq 0x28(%r14), %rdx
leaq 0x2a8d4c(%rip), %rdi    # 0x2fcae4
leaq 0x2a8d50(%rip), %rsi    # 0x2fcaef
xorl %ecx, %ecx
movq %r13, %r8
callq 0x9ac58
movq %rax, %r12
movq %rbx, %rdi
movq %rax, %rsi
callq 0x97f31
leaq 0x30(%r14), %rdx
leaq 0x30d223(%rip), %rdi    # 0x360fe5
leaq 0x2a8d70(%rip), %rsi    # 0x2fcb39
movq %r13, %rcx
movq %r13, %r8
callq 0x9ac58
movq %rax, %r13
movq %rbx, %rdi
movq %rax, %rsi
callq 0x97f31
movq (%r14), %rdx
leaq 0x2a8d79(%rip), %rdi    # 0x2fcb65
leaq 0x2a8d7b(%rip), %rsi    # 0x2fcb6e
callq 0x9ad43
movq %rax, %rbp
movq %rax, %rdi
callq 0x97db0
movq %rax, 0x18(%r14)
movq %rbx, %rdi
movq %rbp, %rsi
callq 0x97f31
movq 0x8(%r14), %rdx
leaq 0x2b84ea(%rip), %rdi    # 0x30c307
leaq 0x2a8d96(%rip), %rsi    # 0x2fcbba
callq 0x9ad43
movq %rbx, %rdi
movq %rax, %rsi
callq 0x97f31
leaq 0x44(%r14), %rdx
leaq 0x299677(%rip), %rdi    # 0x2ed4b6
leaq 0x2a8de8(%rip), %rsi    # 0x2fcc2e
xorl %ecx, %ecx
callq 0x9a997
movq %rbx, %rdi
movq %rax, %rsi
callq 0x97f31
addq $0x45, %r14
movq %r14, %rdi
callq 0x9a9b6
movq %rbx, %rdi
movq %rax, %rsi
callq 0x97f31
movq %rbp, %rdi
movq %r15, %rsi
callq 0x9b38d
movq %rbp, %rdi
movq %r12, %rsi
callq 0x9b38d
movq %rbp, %rdi
movq %r13, %rsi
callq 0x9b38d
movq %rbx, %rax
addq $0x8, %rsp
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
retq