// File: /workspace/github_cpp_makefile_star2_O3/prophyle[P]prophasm/src/prophasm.cpp
// Function: ks_getuntil2(__kstream_t*, int, __kstring_t*, int*, int)
void print_help(){
	std::cerr <<
		"\n" <<
		"Program:  prophasm (a greedy assembler for k-mer set compression)\n" <<
		"Version:  " VERSION "\n" <<
		"Contact:  Karel Brinda <kbrinda@hsph.harvard.edu>\n" <<
		"\n" <<
		"Usage:    prophasm [options]\n" <<
		"\n" <<
		"Examples: prophasm -k 15 -i f1.fa -i f2.fa -x fx.fa\n" <<
		"             - compute intersection of f1 and f2\n" <<
		"          prophasm -k 15 -i f1.fa -i f2.fa -x fx.fa -o g1.fa -o g2.fa\n" <<
		"             - compute intersection of f1 and f2, and subtract it from them\n" <<
		"          prophasm -k 15 -i f1.fa -o g1.fa\n" <<
		"             - re-assemble f1 to g1\n" <<
		"\n" <<
		"Command-line parameters:\n" <<
		" -k INT   K-mer size.\n" <<
		" -i FILE  Input FASTA file (can be used multiple times).\n" <<
		" -o FILE  Output FASTA file (if used, must be used as many times as -i).\n" <<
		" -x FILE  Compute intersection, subtract it, save it.\n" <<
		" -s FILE  Output file with k-mer statistics.\n" <<
		//" -k INT   K-mer size. [" << default_k << "]\n" <<
		" -S       Silent mode.\n" <<
		"\n" <<
		"Note that '-' can be used for standard input/output. \n" <<
		std::endl;
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
subq $0x18, %rsp
movq %rcx, %rbp
movq %rdx, %r13
movl %esi, %r15d
movq %rdi, %r14
testq %rcx, %rcx
je 0x3652
movl $0x0, (%rbp)
testl %r8d, %r8d
je 0x365d
movq (%r13), %rax
jmp 0x365f
xorl %eax, %eax
movq %rax, (%r13)
movl 0x8(%r14), %eax
movl 0xc(%r14), %r12d
movb $0x1, %bl
movl %r15d, 0x4(%rsp)
movq %r13, 0x8(%rsp)
movq %rbp, 0x10(%rsp)
cmpl %r12d, %eax
jl 0x36b4
cmpl $0x0, 0x10(%r14)
jne 0x3828
movl $0x0, 0x8(%r14)
movq (%r14), %rsi
movq 0x18(%r14), %rdi
movl $0x4000, %edx           # imm = 0x4000
callq 0x23b0
movl %eax, %r12d
movl %eax, 0xc(%r14)
testl %eax, %eax
je 0x381d
movl 0x8(%r14), %ebp
movslq %ebp, %rbx
testl %r15d, %r15d
je 0x36e6
cmpl $0x2, %r15d
jne 0x3710
movl %ebp, %r15d
cmpl %r12d, %ebp
jge 0x3747
addq (%r14), %rbx
movl %ebp, %r15d
cmpb $0xa, (%rbx)
je 0x3747
incl %r15d
incq %rbx
cmpl %r15d, %r12d
jne 0x36d4
jmp 0x370b
movl %ebp, %r15d
cmpl %r12d, %ebp
jge 0x3747
addq (%r14), %rbx
movl %ebp, %r15d
movzbl (%rbx), %edi
callq 0x2060
testl %eax, %eax
jne 0x3747
incl %r15d
incq %rbx
cmpl %r15d, %r12d
jne 0x36f4
movl %r12d, %r15d
jmp 0x3747
movl %ebp, %r15d
cmpl %r12d, %ebp
jge 0x3747
addq (%r14), %rbx
movl %ebp, %r15d
movzbl (%rbx), %r13d
movl %r13d, %edi
callq 0x2060
cmpl $0x20, %r13d
je 0x3734
testl %eax, %eax
jne 0x3742
incl %r15d
incq %rbx
cmpl %r15d, %r12d
jne 0x371e
movl %r12d, %r15d
movq 0x8(%rsp), %r13
movq (%r13), %rdi
movq 0x8(%r13), %rdx
subq %rdi, %rdx
movl %r15d, %ecx
subl %ebp, %ecx
leal 0x1(%rcx), %eax
movslq %eax, %rsi
movq 0x10(%r13), %rax
cmpq %rsi, %rdx
jae 0x37bd
movslq %ecx, %rcx
addq %rcx, %rdi
movq %rdi, %rcx
shrq %rcx
orq %rdi, %rcx
movq %rcx, %rdx
shrq $0x2, %rdx
orq %rcx, %rdx
movq %rdx, %rcx
shrq $0x4, %rcx
orq %rdx, %rcx
movq %rcx, %rdx
shrq $0x8, %rdx
orq %rcx, %rdx
movq %rdx, %rsi
shrq $0x10, %rsi
orq %rdx, %rsi
incq %rsi
movq %rsi, 0x8(%r13)
movq %rax, %rdi
callq 0x2350
movq %rax, 0x10(%r13)
movq (%r13), %rdi
movl 0x8(%r14), %ebp
movl %r15d, %ecx
subl %ebp, %ecx
addq %rax, %rdi
movslq %ebp, %rsi
addq (%r14), %rsi
movslq %ecx, %rdx
callq 0x21c0
movslq 0x8(%r14), %rax
movslq %r15d, %rcx
movq %rcx, %rdx
subq %rax, %rdx
addq %rdx, (%r13)
leal 0x1(%r15), %eax
movl %eax, 0x8(%r14)
movl 0xc(%r14), %r12d
movq 0x10(%rsp), %rbp
testq %rbp, %rbp
je 0x37fa
cmpl %r12d, %r15d
jl 0x380c
xorl %ebx, %ebx
cmpl %r12d, %r15d
movl 0x4(%rsp), %r15d
jge 0x367c
jmp 0x3838
movq (%r14), %rax
movzbl (%rax,%rcx), %eax
movl %eax, (%rbp)
movl 0x4(%rsp), %r15d
jmp 0x3838
movl $0x1, 0x10(%r14)
xorl %r12d, %r12d
testb $0x1, %bl
je 0x3838
movl $0xffffffff, %eax       # imm = 0xFFFFFFFF
cmpl %r12d, 0x8(%r14)
jge 0x3894
movq 0x10(%r13), %rax
testq %rax, %rax
je 0x386d
cmpl $0x2, %r15d
sete %dl
movq (%r13), %rcx
cmpq $0x2, %rcx
setae %sil
andb %dl, %sil
cmpb $0x1, %sil
jne 0x388c
cmpb $0xd, -0x1(%rax,%rcx)
jne 0x388c
decq %rcx
movq %rcx, (%r13)
jmp 0x388c
movq $0x1, 0x8(%r13)
movl $0x1, %edi
movl $0x1, %esi
callq 0x2150
movq %rax, 0x10(%r13)
movq (%r13), %rcx
movb $0x0, (%rax,%rcx)
movl (%r13), %eax
addq $0x18, %rsp
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
retq
nop