// File: /workspace/github_c_makefile_star2_O1/genometools[P]genometools/src/core/encseq.c
// Function: gt_encseq_builder_add_cstr
void gt_encseq_builder_add_cstr(GtEncseqBuilder *eb, const char *str,
                                GtUword strlen, const char *desc)
{
  GtUword i, offset;
  gt_assert(eb && str);
  if (eb->plainseq && !eb->own) {
    GtUchar *theirseq = eb->plainseq;
    eb->plainseq = gt_malloc((size_t) eb->seqlen * sizeof (GtUchar));
    eb->allocated = (size_t) (eb->seqlen * sizeof (GtUchar));
    memcpy(eb->plainseq, theirseq, (size_t) eb->seqlen);
  }
  /* store separator position if needed */
  if (eb->wssptab && !eb->firstseq) {
    GT_STOREINARRAY(&eb->ssptab, GtUword, 128, eb->seqlen);
  }
  /* from the second sequence on, add a separator before adding symbols */
  if (!eb->firstseq) {
    eb->plainseq = gt_dynalloc(eb->plainseq, &eb->allocated,
                               (eb->seqlen + strlen+1) * sizeof (GtUchar));
    eb->plainseq[eb->seqlen] = (GtUchar) GT_SEPARATOR;
    offset = eb->seqlen+1;
    eb->seqlen += strlen+1;
  } else {
    eb->plainseq = gt_dynalloc(eb->plainseq, &eb->allocated,
                               strlen * sizeof (GtUchar));
    offset = 0;
    eb->seqlen = strlen;
    eb->firstseq = false;
  }
  /* append description to in-memory description table */
  if (eb->wdestab) {
    gt_assert(desc);
    gt_str_append_cstr(eb->destab, desc);
    gt_str_append_char(eb->destab, '\n');
    /* store description separator position */
    if (eb->wsdstab) {
      GT_STOREINARRAY(&eb->sdstab, GtUword, 128,
                      gt_str_length(eb->destab)-1);
    }
    eb->firstdesc = false;
  }
  /* copy sequence, encode on the fly */
  for (i=0;i < strlen; i++) {
    gt_assert(gt_alphabet_valid_input(eb->alpha, str[i]));
    eb->plainseq[offset+i] = gt_alphabet_encode(eb->alpha, str[i]);
  }
  eb->nof_seqs++;
  if (eb->minseqlen == GT_UNDEF_UWORD || strlen < eb->minseqlen)
    eb->minseqlen = strlen;
  if (eb->maxseqlen == GT_UNDEF_UWORD || strlen > eb->maxseqlen)
    eb->maxseqlen = strlen;
  eb->own = true;
}

// Assembly:
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
testq %rdi, %rdi
je 0xc9cb8
movq %rsi, %r15
testq %rsi, %rsi
je 0xc9cb8
movq %rcx, %r12
movq %rdx, %r14
movq %rdi, %rbx
movq (%rdi), %r13
testq %r13, %r13
je 0xc9aeb
cmpb $0x0, 0x68(%rbx)
jne 0xc9aeb
movq 0x8(%rbx), %rdi
leaq 0x38f5f(%rip), %rsi     # 0x102a2a
movl $0x22e6, %edx           # imm = 0x22E6
callq 0x35ee2
movq %rax, (%rbx)
movq 0x8(%rbx), %rdx
movq %rdx, 0x60(%rbx)
movq %rax, %rdi
movq %r13, %rsi
callq 0xb520
cmpb $0x1, 0x6b(%rbx)
jne 0xc9b4e
cmpb $0x0, 0x6e(%rbx)
jne 0xc9b4e
movq 0x48(%rbx), %rax
cmpq %rax, 0x50(%rbx)
jb 0xc9b2d
leaq 0x80(%rax), %rcx
movq %rcx, 0x48(%rbx)
movq 0x40(%rbx), %rdi
leaq 0x400(,%rax,8), %rsi
leaq 0x38f0b(%rip), %rdx     # 0x102a2a
movl $0x22ec, %ecx           # imm = 0x22EC
callq 0x36116
movq %rax, 0x40(%rbx)
movq 0x40(%rbx), %rax
testq %rax, %rax
je 0xc9cc2
movq 0x8(%rbx), %rcx
movq 0x50(%rbx), %rdx
leaq 0x1(%rdx), %rsi
movq %rsi, 0x50(%rbx)
movq %rcx, (%rax,%rdx,8)
movq (%rbx), %rdi
leaq 0x60(%rbx), %rsi
cmpb $0x0, 0x6e(%rbx)
je 0xc9b73
movq %r14, %rdx
callq 0x73b98
movq %rax, (%rbx)
movq %r14, 0x8(%rbx)
movb $0x0, 0x6e(%rbx)
xorl %r13d, %r13d
jmp 0xc9b9d
leaq 0x1(%r14), %rdx
addq 0x8(%rbx), %rdx
callq 0x73b98
movq %rax, (%rbx)
movq 0x8(%rbx), %rcx
movb $-0x1, (%rax,%rcx)
movq 0x8(%rbx), %r13
leaq (%r14,%r13), %rax
incq %rax
incq %r13
movq %rax, 0x8(%rbx)
cmpb $0x1, 0x6a(%rbx)
jne 0xc9c35
testq %r12, %r12
je 0xc9cbd
movq 0x58(%rbx), %rdi
movq %r12, %rsi
callq 0x3c067
movq 0x58(%rbx), %rdi
movl $0xa, %esi
callq 0x3c28d
cmpb $0x1, 0x6c(%rbx)
jne 0xc9c31
movq 0x30(%rbx), %rax
cmpq %rax, 0x38(%rbx)
jb 0xc9c06
leaq 0x80(%rax), %rcx
movq %rcx, 0x30(%rbx)
movq 0x28(%rbx), %rdi
leaq 0x400(,%rax,8), %rsi
leaq 0x38e32(%rip), %rdx     # 0x102a2a
movl $0x2304, %ecx           # imm = 0x2304
callq 0x36116
movq %rax, 0x28(%rbx)
cmpq $0x0, 0x28(%rbx)
je 0xc9cc7
movq 0x58(%rbx), %rdi
callq 0x3c434
decq %rax
movq 0x28(%rbx), %rcx
movq 0x38(%rbx), %rdx
leaq 0x1(%rdx), %rsi
movq %rsi, 0x38(%rbx)
movq %rax, (%rcx,%rdx,8)
movb $0x0, 0x6d(%rbx)
testq %r14, %r14
je 0xc9c6f
xorl %r12d, %r12d
movq 0x70(%rbx), %rdi
movsbl (%r15,%r12), %esi
callq 0xb9d21
testb %al, %al
je 0xc9cb3
movq 0x70(%rbx), %rdi
movsbl (%r15,%r12), %esi
callq 0xb9d2d
movq (%rbx), %rcx
addq %r13, %rcx
movb %al, (%r12,%rcx)
incq %r12
cmpq %r12, %r14
jne 0xc9c3d
incq 0x10(%rbx)
movq 0x18(%rbx), %rax
cmpq $-0x1, %rax
setne %cl
cmpq %r14, %rax
setbe %al
testb %al, %cl
jne 0xc9c8c
movq %r14, 0x18(%rbx)
movq 0x20(%rbx), %rax
cmpq $-0x1, %rax
setne %cl
cmpq %r14, %rax
setae %al
testb %al, %cl
jne 0xc9ca5
movq %r14, 0x20(%rbx)
movb $0x1, 0x68(%rbx)
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
retq
callq 0x2e2f8
callq 0x2e286
callq 0x2e36a
callq 0x2e2bf
callq 0x2e331