LLM4Binary/decompile-bench-makefile huggingface dataset:
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/match_iterator_blast.c
// Function: gt_match_iterator_blastp_process_new
GtMatchIterator* gt_match_iterator_blastp_process_new(const char *query,
                                                      const char *db_name,
                                                      double evalue,
                                                      int word_size,
                                                      int gapopen,
                                                      int gapextend,
                                                      int num_threads,
                                                      double xdrop_gap_final,
                                                      GtError *err)
{
  GtBlastProcessCall *call = gt_blast_process_call_new_all_prot();

  gt_blast_process_call_set_query(call, query);
  gt_blast_process_call_set_db(call, db_name);
  if (evalue != GT_UNDEF_DOUBLE)
    gt_blast_process_call_set_evalue(call, evalue);
  if (word_size != GT_UNDEF_INT)
    gt_blast_process_call_set_wordsize(call, word_size);
  if (gapopen != GT_UNDEF_INT)
    gt_blast_process_call_set_gapopen(call, gapopen);
  if (gapextend != GT_UNDEF_INT)
    gt_blast_process_call_set_gapextend(call, gapextend);
  if (num_threads != GT_UNDEF_INT)
    gt_blast_process_call_set_num_threads(call, num_threads);
  if (xdrop_gap_final != GT_UNDEF_DOUBLE)
    gt_blast_process_call_set_xdrop_gap_final(call, xdrop_gap_final);

  return gt_match_iterator_blast_process_new(call, err);
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
subq $0x28, %rsp
movsd %xmm1, 0x20(%rsp)
movl %r9d, 0xc(%rsp)
movl %r8d, %r15d
movl %ecx, %r12d
movl %edx, %r13d
movsd %xmm0, 0x10(%rsp)
movq %rsi, %rbx
movq %rdi, %rbp
movq 0x60(%rsp), %rax
movq %rax, 0x18(%rsp)
callq 0xbcff0
movq %rax, %r14
movq %rax, %rdi
movq %rbp, %rsi
callq 0xbd034
movq %r14, %rdi
movq %rbx, %rsi
callq 0xbd0af
movsd 0x10(%rsp), %xmm0
ucomisd 0x1eaf0b(%rip), %xmm0   # 0x2e7d10
jne 0xfce09
jnp 0xfce11
movq %r14, %rdi
callq 0xbd12c
movl %r13d, %eax
negl %eax
jo 0xfce23
movq %r14, %rdi
movl %r13d, %esi
callq 0xbd1b0
movl %r12d, %eax
negl %eax
jo 0xfce35
movq %r14, %rdi
movl %r12d, %esi
callq 0xbd22b
movl %r15d, %eax
negl %eax
jo 0xfce47
movq %r14, %rdi
movl %r15d, %esi
callq 0xbd2a6
movl 0xc(%rsp), %esi
movl %esi, %eax
negl %eax
jo 0xfce59
movq %r14, %rdi
callq 0xbd47f
movsd 0x20(%rsp), %xmm0
ucomisd 0x1eaea9(%rip), %xmm0   # 0x2e7d10
jne 0xfce6b
jnp 0xfce73
movq %r14, %rdi
callq 0xbd4fa
movq %r14, %rdi
movq 0x18(%rsp), %rsi
addq $0x28, %rsp
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
jmp 0xfc86f
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/match_iterator_blast.c
// Function: gt_match_iterator_blast_free
static void gt_match_iterator_blast_free(GtMatchIterator *mp)
{
  GtMatchIteratorBlast *mpb;
  if (!mp) return;
  mpb = gt_match_iterator_blast_cast(mp);
  if (mpb->pvt->matchfilep) {
    if (mpb->pvt->process) {
      pclose(mpb->pvt->matchfilep);
    } else {
      fclose(mpb->pvt->matchfilep);
    }
    mpb->pvt->matchfilep = NULL;
  }
  if (mpb->pvt->gtmatchfilep != NULL)
    gt_file_delete(mpb->pvt->gtmatchfilep);
  gt_free(mpb->pvt);
}

// Assembly:
testq %rdi, %rdi
je 0xfd229
pushq %rbx
movq %rdi, %rbx
callq 0xfc834
movq %rax, %rdi
movq %rbx, %rsi
callq 0xfc6cb
movq %rax, %rbx
movq 0x8(%rax), %rdi
movq 0x8(%rdi), %rax
testq %rax, %rax
je 0xfd23b
cmpb $0x1, 0x20(%rdi)
jne 0xfd22a
movq %rax, %rdi
callq 0x17a10
jmp 0xfd232
retq
movq %rax, %rdi
callq 0x177c0
movq 0x8(%rbx), %rdi
andq $0x0, 0x8(%rdi)
movq 0x10(%rdi), %rax
testq %rax, %rax
je 0xfd250
movq %rax, %rdi
callq 0x8da06
movq 0x8(%rbx), %rdi
leaq 0x22a111(%rip), %rsi    # 0x327368
movl $0x197, %edx            # imm = 0x197
popq %rbx
jmp 0x936f9
nop
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/match_iterator_last.c
// Function: gt_match_iterator_last_class
const GtMatchIteratorClass* gt_match_iterator_last_class(void)
{
  static const GtMatchIteratorClass *mpc;
  gt_class_alloc_lock_enter();
  if (!mpc) {
    mpc = gt_match_iterator_class_new(sizeof (GtMatchIteratorLast),
                               gt_match_iterator_last_next,
                               gt_match_iterator_last_free);
  }
  gt_class_alloc_lock_leave();
  return mpc;
}

// Assembly:
pushq %rax
callq 0x69e97
cmpq $0x0, 0x33ffdc(%rip)    # 0x43d750
jne 0xfd793
leaq 0x24(%rip), %rsi        # 0xfd7a1
leaq 0xa4a(%rip), %rdx       # 0xfe1ce
pushq $0x10
popq %rdi
callq 0xfc5f8
movq %rax, 0x33ffbd(%rip)    # 0x43d750
callq 0x69ede
movq 0x33ffb1(%rip), %rax    # 0x43d750
popq %rcx
retq
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/match_iterator_last.c
// Function: gt_match_iterator_last_free
static void gt_match_iterator_last_free(GtMatchIterator *mp)
{
  GtMatchIteratorLast *mil;
  if (!mp) return;
  mil = gt_match_iterator_last_cast(mp);
  gt_file_delete(mil->pvt->matchfile);
  gt_str_delete(mil->pvt->matchfilename);
  gt_str_delete(mil->pvt->idxfilename);
  gt_str_delete(mil->pvt->queryfilename);
  gt_str_delete(mil->pvt->linebuf);
  gt_encseq_delete(mil->pvt->es1);
  gt_encseq_delete(mil->pvt->es2);
  gt_hashmap_delete(mil->pvt->desc_to_seqno);
  gt_free(mil->pvt);
}

// Assembly:
testq %rdi, %rdi
je 0xfe26b
pushq %rbx
movq %rdi, %rbx
callq 0xfd766
movq %rax, %rdi
movq %rbx, %rsi
callq 0xfc6cb
movq %rax, %rbx
movq 0x8(%rax), %rax
movq 0x60(%rax), %rdi
callq 0x8da06
movq 0x8(%rbx), %rax
movq 0x50(%rax), %rdi
callq 0xae103
movq 0x8(%rbx), %rax
movq 0x40(%rax), %rdi
callq 0xae103
movq 0x8(%rbx), %rax
movq 0x48(%rax), %rdi
callq 0xae103
movq 0x8(%rbx), %rax
movq 0x58(%rax), %rdi
callq 0xae103
movq 0x8(%rbx), %rax
movq (%rax), %rdi
callq 0x735fd
movq 0x8(%rbx), %rax
movq 0x8(%rax), %rdi
callq 0x735fd
movq 0x8(%rbx), %rax
movq 0x68(%rax), %rdi
callq 0x8f933
movq 0x8(%rbx), %rdi
leaq 0x2292be(%rip), %rsi    # 0x32751e
movl $0x204, %edx            # imm = 0x204
popq %rbx
jmp 0x936f9
retq
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/match_iterator_open.c
// Function: gt_match_iterator_open_new
GtMatchIterator* gt_match_iterator_open_new(const char *matchfile, GtError *err)
{
  GtMatchIterator *mp;
  GtMatchIteratorOpen *mpo;
  mp = gt_match_iterator_create(gt_match_iterator_open_class());
  mpo = (GtMatchIteratorOpen*) mp;
  mpo->pvt = gt_calloc(1, sizeof (GtMatchIteratorOpenMembers));
  GtFileMode mode;
  if (gt_file_exists(matchfile)) {
    mode = gt_file_mode_determine(matchfile);
    if (mode == GT_FILE_MODE_UNCOMPRESSED) {
      mpo->pvt->matchfilep = fopen(matchfile, "r");
      mpo->pvt->gtmatchfilep = NULL;
      if (!mpo->pvt->matchfilep) {
        gt_error_set(err, "Could not open %s", matchfile);
        return NULL;
      }
    } else {
      mpo->pvt->gtmatchfilep = gt_file_open(mode, matchfile, "r", err);
      mpo->pvt->matchfilep = NULL;
      if (!mpo->pvt->gtmatchfilep)
        return NULL;
    }
    mpo->pvt->matchfile = matchfile;
    return mp;
  } else {
    gt_error_set(err, "No such file or directory %s", matchfile);
    return NULL;
  }
}

// Assembly:
pushq %r15
pushq %r14
pushq %rbx
movq %rsi, %r15
movq %rdi, %r14
callq 0xfe55b
movq %rax, %rdi
callq 0xfc61f
movq %rax, %rbx
leaq 0x22934b(%rip), %rdx    # 0x327801
pushq $0x1
popq %rdi
pushq $0x20
popq %rsi
movl $0x9e, %ecx
callq 0x9334a
movq %rax, 0x8(%rbx)
movq %r14, %rdi
callq 0x8da98
testb %al, %al
je 0xfe50c
movq %r14, %rdi
callq 0x8ccb0
testl %eax, %eax
je 0xfe524
leaq 0x1fc944(%rip), %rdx    # 0x2fae2d
movl %eax, %edi
movq %r14, %rsi
movq %r15, %rcx
callq 0x8cea6
movq 0x8(%rbx), %rcx
movq %rax, 0x10(%rcx)
andq $0x0, 0x8(%rcx)
testq %rax, %rax
jne 0xfe545
xorl %ebx, %ebx
jmp 0xfe549
leaq 0x229323(%rip), %rsi    # 0x327836
xorl %ebx, %ebx
movq %r15, %rdi
movq %r14, %rdx
xorl %eax, %eax
callq 0x89dbb
jmp 0xfe549
leaq 0x1fc902(%rip), %rsi    # 0x2fae2d
movq %r14, %rdi
callq 0x17860
movq 0x8(%rbx), %rcx
movq %rax, 0x8(%rcx)
andq $0x0, 0x10(%rcx)
testq %rax, %rax
je 0xfe552
movq %r14, 0x18(%rcx)
movq %rbx, %rax
popq %rbx
popq %r14
popq %r15
retq
leaq 0x2292cb(%rip), %rsi    # 0x327824
jmp 0xfe513
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/match_iterator_open.c
// Function: gt_match_iterator_open_class
const GtMatchIteratorClass* gt_match_iterator_open_class(void)
{
  static const GtMatchIteratorClass *mpc;
  gt_class_alloc_lock_enter();
  if (!mpc) {
    mpc = gt_match_iterator_class_new(sizeof (GtMatchIteratorOpen),
                               gt_match_iterator_open_next,
                               gt_match_iterator_open_free);
  }
  gt_class_alloc_lock_leave();
  return mpc;
}

// Assembly:
pushq %rax
callq 0x69e97
cmpq $0x0, 0x33f1ef(%rip)    # 0x43d758
jne 0xfe588
leaq 0x24(%rip), %rsi        # 0xfe596
leaq 0x2c6(%rip), %rdx       # 0xfe83f
pushq $0x10
popq %rdi
callq 0xfc5f8
movq %rax, 0x33f1d0(%rip)    # 0x43d758
callq 0x69ede
movq 0x33f1c4(%rip), %rax    # 0x43d758
popq %rcx
retq
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/match_iterator_open.c
// Function: gt_match_iterator_open_free
static void gt_match_iterator_open_free(GtMatchIterator *mp)
{
  GtMatchIteratorOpen *mpo;
  if (!mp) return;
  mpo = gt_match_iterator_open_cast(mp);
  if (mpo->pvt->matchfilep != NULL)
    fclose(mpo->pvt->matchfilep);
  if (mpo->pvt->gtmatchfilep != NULL)
    gt_file_delete(mpo->pvt->gtmatchfilep);
  gt_free(mpo->pvt);
}

// Assembly:
testq %rdi, %rdi
je 0xfe89b
pushq %rbx
movq %rdi, %rbx
callq 0xfe55b
movq %rax, %rdi
movq %rbx, %rsi
callq 0xfc6cb
movq %rax, %rbx
movq 0x8(%rax), %rdi
movq 0x8(%rdi), %rax
testq %rax, %rax
je 0xfe874
movq %rax, %rdi
callq 0x177c0
movq 0x8(%rbx), %rdi
movq 0x10(%rdi), %rax
testq %rax, %rax
je 0xfe889
movq %rax, %rdi
callq 0x8da06
movq 0x8(%rbx), %rdi
leaq 0x228f71(%rip), %rsi    # 0x327801
movl $0xc0, %edx
popq %rbx
jmp 0x936f9
retq
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/match_iterator_sw.c
// Function: gt_match_iterator_sw_new
GtMatchIterator* gt_match_iterator_sw_new(GtEncseq *es1, GtEncseq *es2,
                                          GtScoreFunction *sf,
                                          GtUword min_len,
                                          GtUword max_edist,
                                          GT_UNUSED GtError *err)
{
  GtMatchIterator *mi;
  GtMatchIteratorSW *mis;
  gt_assert(es1 && es2 && sf);
  gt_error_check(err);

  mi = gt_match_iterator_create(gt_match_iterator_sw_class());
  mis = (GtMatchIteratorSW*) mi;
  mis->pvt = gt_calloc(1, sizeof (GtMatchIteratorSWMembers));
  mis->pvt->es1 = gt_encseq_ref(es1);
  mis->pvt->es2 = gt_encseq_ref(es2);
  mis->pvt->sf = gt_score_function_ref(sf);
  mis->pvt->min_len = min_len;
  mis->pvt->max_edist = max_edist;
  mis->pvt->firstali = true;
  return mi;
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
pushq %rax
testq %rdi, %rdi
je 0xfe95e
movq %rsi, %r12
testq %rsi, %rsi
je 0xfe95e
movq %rdx, %r15
testq %rdx, %rdx
je 0xfe95e
movq %r8, %rbx
movq %rcx, %r14
movq %rdi, %r13
testq %r9, %r9
je 0xfe8e6
movq %r9, %rdi
callq 0x89eb7
testb %al, %al
jne 0xfe98c
callq 0xfe9c4
movq %rax, %rdi
callq 0xfc61f
movq %rax, %rbp
leaq 0x228ff7(%rip), %rdx    # 0x3278f4
pushq $0x1
popq %rdi
pushq $0x40
popq %rsi
movl $0x85, %ecx
callq 0x9334a
movq %rax, 0x8(%rbp)
movq %r13, %rdi
callq 0x73cbe
movq 0x8(%rbp), %rcx
movq %rax, 0x8(%rcx)
movq %r12, %rdi
callq 0x73cbe
movq 0x8(%rbp), %rcx
movq %rax, 0x10(%rcx)
movq %r15, %rdi
callq 0xa48af
movq 0x8(%rbp), %rcx
movq %rax, (%rcx)
movq %r14, 0x28(%rcx)
movq %rbx, 0x30(%rcx)
movb $0x1, 0x38(%rcx)
movq %rbp, %rax
addq $0x8, %rsp
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
retq
movq 0x339603(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x1e66a4(%rip), %rsi    # 0x2e5013
leaq 0x228f54(%rip), %rdx    # 0x3278ca
leaq 0x228f5e(%rip), %rcx    # 0x3278db
leaq 0x228f70(%rip), %r8     # 0x3278f4
movl $0x80, %r9d
jmp 0xfe9b8
movq 0x3395d5(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x1e6676(%rip), %rsi    # 0x2e5013
leaq 0x1e681b(%rip), %rdx    # 0x2e51bf
leaq 0x228f30(%rip), %rcx    # 0x3278db
leaq 0x228f42(%rip), %r8     # 0x3278f4
movl $0x81, %r9d
xorl %eax, %eax
callq 0x17a50
callq 0x17390
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/match_iterator_sw.c
// Function: gt_match_iterator_sw_class
const GtMatchIteratorClass* gt_match_iterator_sw_class(void)
{
  static const GtMatchIteratorClass *mic;

  if (!mic) {
    mic = gt_match_iterator_class_new(sizeof (GtMatchIteratorSW),
                                      gt_match_iterator_sw_next,
                                      gt_match_iterator_sw_free);
  }
  return mic;
}

// Assembly:
movq 0x33ed95(%rip), %rax    # 0x43d760
testq %rax, %rax
je 0xfe9d1
retq
pushq %rax
leaq 0x1b(%rip), %rsi        # 0xfe9f4
leaq 0x38c(%rip), %rdx       # 0xfed6c
pushq $0x10
popq %rdi
callq 0xfc5f8
movq %rax, 0x33ed71(%rip)    # 0x43d760
addq $0x8, %rsp
retq
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/match_iterator_sw.c
// Function: gt_match_iterator_sw_free
static void gt_match_iterator_sw_free(GtMatchIterator *mi)
{
  GtMatchIteratorSW *mis;
  if (!mi) return;
  mis = gt_match_iterator_sw_cast(mi);
  gt_encseq_delete(mis->pvt->es1);
  gt_encseq_delete(mis->pvt->es2);
  gt_score_function_delete(mis->pvt->sf);
  gt_free(mis->pvt);
}

// Assembly:
testq %rdi, %rdi
je 0xfedc4
pushq %rbx
movq %rdi, %rbx
callq 0xfe9c4
movq %rax, %rdi
movq %rbx, %rsi
callq 0xfc6cb
movq %rax, %rbx
movq 0x8(%rax), %rax
movq 0x8(%rax), %rdi
callq 0x735fd
movq 0x8(%rbx), %rax
movq 0x10(%rax), %rdi
callq 0x735fd
movq 0x8(%rbx), %rax
movq (%rax), %rdi
callq 0xa49c4
movq 0x8(%rbx), %rdi
leaq 0x228b3b(%rip), %rsi    # 0x3278f4
movl $0x97, %edx
popq %rbx
jmp 0x936f9
retq
nopl (%rax)
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/match_last.c
// Function: gt_match_last_class
const GtMatchClass* gt_match_last_class()
{
  static const GtMatchClass *matchc = NULL;
  gt_class_alloc_lock_enter();
  if (!matchc) {
    matchc = gt_match_class_new(sizeof (GtMatchLAST),
                                NULL,
                                NULL);
  }
  gt_class_alloc_lock_leave();
  return matchc;
}

// Assembly:
pushq %rax
callq 0x69e97
cmpq $0x0, 0x33e992(%rip)    # 0x43d768
jne 0xfedeb
pushq $0x58
popq %rdi
xorl %esi, %esi
xorl %edx, %edx
callq 0xfb9e4
movq %rax, 0x33e97d(%rip)    # 0x43d768
callq 0x69ede
movq 0x33e971(%rip), %rax    # 0x43d768
popq %rcx
retq
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/match_last.c
// Function: gt_match_last_new
GtMatch* gt_match_last_new(const char *seqid1,
                           const char *seqid2,
                           GtUword score,
                           GtUword seqno1,
                           GtUword seqno2,
                           GtUword start_seq1,
                           GtUword start_seq2,
                           GtUword end_seq1,
                           GtUword end_seq2,
                           GtMatchDirection dir)
{
  GtMatch *match;
  GtMatchLAST *matchs;
  match = gt_match_create(gt_match_last_class(), start_seq1, end_seq1,
                          start_seq2, end_seq2, seqid1, seqid2, dir);
  matchs = gt_match_last_cast(match);
  matchs->seqno1 = seqno1;
  matchs->seqno2 = seqno2;
  matchs->score = score;
  return match;
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
pushq %rax
movq %r9, %r12
movq %r8, %rbx
movq %rcx, %r15
movq %rdx, %r14
movq %rsi, %r13
movq %rdi, %rbp
callq 0xfedc8
movq %rax, %rdi
movq %r12, %rsi
movq 0x48(%rsp), %rdx
movq 0x40(%rsp), %rcx
movq 0x50(%rsp), %r8
movq %rbp, %r9
movl 0x58(%rsp), %eax
pushq %rax
pushq %r13
callq 0xfba46
popq %rcx
popq %rdx
movq %rax, %r12
callq 0xfedc8
movq %rax, %rdi
movq %r12, %rsi
callq 0xfbb1a
movq %r15, 0x40(%rax)
movq %rbx, 0x48(%rax)
movq %r14, 0x50(%rax)
movq %r12, %rax
addq $0x8, %rsp
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
retq
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/match_open.c
// Function: gt_match_open_class
const GtMatchClass* gt_match_open_class()
{
  static const GtMatchClass *matchc = NULL;
  gt_class_alloc_lock_enter();
  if (!matchc) {
    matchc = gt_match_class_new(sizeof (GtMatchOpen),
                                NULL,
                                match_open_accept);
  }
  gt_class_alloc_lock_leave();
  return matchc;
}

// Assembly:
pushq %rax
callq 0x69e97
cmpq $0x0, 0x33e82a(%rip)    # 0x43d770
jne 0xfef60
leaq 0x1f(%rip), %rdx        # 0xfef6e
pushq $0x48
popq %rdi
xorl %esi, %esi
callq 0xfb9e4
movq %rax, 0x33e810(%rip)    # 0x43d770
callq 0x69ede
movq 0x33e804(%rip), %rax    # 0x43d770
popq %rcx
retq
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/match_open.c
// Function: match_open_accept
static int match_open_accept(GtMatch *match, GtMatchVisitor *mv, GtError *err)
{
  GtMatchOpen *mo;
  gt_assert(match && mv);
  gt_error_check(err);
  mo = gt_match_open_cast(match);
  return gt_match_visitor_visit_match_open(mv, mo, err);
}

// Assembly:
pushq %r15
pushq %r14
pushq %rbx
testq %rdi, %rdi
je 0xfefba
movq %rsi, %r14
testq %rsi, %rsi
je 0xfefba
movq %rdx, %rbx
movq %rdi, %r15
testq %rdx, %rdx
je 0xfef97
movq %rbx, %rdi
callq 0x89eb7
testb %al, %al
jne 0xfefe4
callq 0xfef38
movq %rax, %rdi
movq %r15, %rsi
callq 0xfbb1a
movq %r14, %rdi
movq %rax, %rsi
movq %rbx, %rdx
popq %rbx
popq %r14
popq %r15
jmp 0xff484
movq 0x338fa7(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x1e6048(%rip), %rsi    # 0x2e5013
leaq 0x2282e5(%rip), %rdx    # 0x3272b7
leaq 0x228a15(%rip), %rcx    # 0x3279ee
leaq 0x2289db(%rip), %r8     # 0x3279bb
pushq $0x2b
jmp 0xff00c
movq 0x338f7d(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x1e601e(%rip), %rsi    # 0x2e5013
leaq 0x1e61c3(%rip), %rdx    # 0x2e51bf
leaq 0x2289eb(%rip), %rcx    # 0x3279ee
leaq 0x2289b1(%rip), %r8     # 0x3279bb
pushq $0x2c
popq %r9
xorl %eax, %eax
callq 0x17a50
callq 0x17390
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/match_open.c
// Function: gt_match_open_new
GtMatch* gt_match_open_new(char *seqid1,
                           char *seqid2,
                           GtUword start_seq1,
                           GtUword end_seq1,
                           GtUword start_seq2,
                           GtUword end_seq2,
                           GtWord weight,
                           GtMatchDirection dir)
{
  GtMatch *match;
  GtMatchOpen *matcho;
  match = gt_match_create(gt_match_open_class(), start_seq1, end_seq1,
                          start_seq2, end_seq2, seqid1, seqid2, dir);
  matcho = gt_match_open_cast(match);
  matcho->weight = weight;
  return match;
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
pushq %rax
movq %r9, %rbx
movq %r8, %r14
movq %rcx, %r15
movq %rdx, %r12
movq %rsi, %r13
movq %rdi, %rbp
callq 0xfef38
movq %rax, %rdi
movq %r12, %rsi
movq %r15, %rdx
movq %r14, %rcx
movq %rbx, %r8
movq %rbp, %r9
movl 0x48(%rsp), %eax
pushq %rax
pushq %r13
callq 0xfba46
popq %rcx
popq %rdx
movq %rax, %rbx
callq 0xfef38
movq %rax, %rdi
movq %rbx, %rsi
callq 0xfbb1a
movq 0x40(%rsp), %rcx
movq %rcx, 0x40(%rax)
movq %rbx, %rax
addq $0x8, %rsp
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
retq
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/match_sw.c
// Function: gt_match_sw_class
const GtMatchClass* gt_match_sw_class()
{
  static const GtMatchClass *matchc = NULL;
  gt_class_alloc_lock_enter();
  if (!matchc) {
    matchc = gt_match_class_new(sizeof (GtMatchSW),
                                NULL,
                                NULL);
  }
  gt_class_alloc_lock_leave();
  return matchc;
}

// Assembly:
pushq %rax
callq 0x69e97
cmpq $0x0, 0x33e65e(%rip)    # 0x43d778
jne 0xff12f
pushq $0x60
popq %rdi
xorl %esi, %esi
xorl %edx, %edx
callq 0xfb9e4
movq %rax, 0x33e649(%rip)    # 0x43d778
callq 0x69ede
movq 0x33e63d(%rip), %rax    # 0x43d778
popq %rcx
retq
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/match_sw.c
// Function: gt_match_sw_new
GtMatch* gt_match_sw_new(const char *seqid1,
                         const char *seqid2,
                         GtUword seqno1,
                         GtUword seqno2,
                         GtUword length,
                         GtUword edist,
                         GtUword start_seq1,
                         GtUword start_seq2,
                         GtUword end_seq1,
                         GtUword end_seq2,
                         GtMatchDirection dir)
{
  GtMatch *match;
  GtMatchSW *matchs;
  match = gt_match_create(gt_match_sw_class(), start_seq1, end_seq1,
                          start_seq2, end_seq2, seqid1, seqid2, dir);
  matchs = gt_match_sw_cast(match);
  matchs->alilen = length;
  matchs->seqno1 = seqno1;
  matchs->seqno2 = seqno2;
  matchs->edist = edist;
  return match;
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
pushq %rax
movq %r9, %rbx
movq %r8, %r15
movq %rcx, %r14
movq %rdx, %r12
movq %rsi, %r13
movq %rdi, %rbp
callq 0xff10c
movq %rax, %rdi
movq 0x40(%rsp), %rsi
movq 0x50(%rsp), %rdx
movq 0x48(%rsp), %rcx
movq 0x58(%rsp), %r8
movq %rbp, %r9
movl 0x60(%rsp), %eax
pushq %rax
pushq %r13
callq 0xfba46
popq %rcx
popq %rdx
movq %rax, %r13
callq 0xff10c
movq %rax, %rdi
movq %r13, %rsi
callq 0xfbb1a
movq %r15, 0x58(%rax)
movq %r12, 0x40(%rax)
movq %r14, 0x48(%rax)
movq %rbx, 0x50(%rax)
movq %r13, %rax
addq $0x8, %rsp
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
retq
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/match_visitor.c
// Function: gt_match_visitor_class_new
const GtMatchVisitorClass*
gt_match_visitor_class_new(size_t size,
                           GtMatchVisitorFreeFunc free,
                           GtMatchVisitorBlastFunc match_blast,
                           GtMatchVisitorOpenFunc match_open)
{
  GtMatchVisitorClass *c_class;
  gt_assert(size);
  c_class = gt_class_alloc(sizeof *c_class);
  c_class->size = size;
  c_class->free = free;
  c_class->match_blast = match_blast;
  c_class->match_open = match_open;
  return c_class;
}

// Assembly:
pushq %r15
pushq %r14
pushq %r12
pushq %rbx
pushq %rax
testq %rdi, %rdi
je 0xff2fc
movq %rcx, %rbx
movq %rdx, %r14
movq %rsi, %r15
movq %rdi, %r12
pushq $0x20
popq %rdi
callq 0x292a70
movq %r12, (%rax)
movq %r15, 0x8(%rax)
movq %r14, 0x10(%rax)
movq %rbx, 0x18(%rax)
addq $0x8, %rsp
popq %rbx
popq %r12
popq %r14
popq %r15
retq
movq 0x338c65(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x1e5d06(%rip), %rsi    # 0x2e5013
leaq 0x2044d9(%rip), %rdx    # 0x3037ed
leaq 0x228762(%rip), %rcx    # 0x327a7d
leaq 0x228776(%rip), %r8     # 0x327a98
pushq $0x26
popq %r9
xorl %eax, %eax
callq 0x17a50
callq 0x17390
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/match_visitor.c
// Function: gt_match_visitor_create
GtMatchVisitor* gt_match_visitor_create(const GtMatchVisitorClass *mvc)
{
  GtMatchVisitor *mv;
  gt_assert(mvc && mvc->size);
  mv = gt_calloc(1, mvc->size);
  mv->c_class = mvc;
  return mv;
}

// Assembly:
pushq %rbx
testq %rdi, %rdi
je 0xff35a
movq %rdi, %rbx
movq (%rdi), %rsi
testq %rsi, %rsi
je 0xff35a
leaq 0x22874e(%rip), %rdx    # 0x327a98
pushq $0x1
popq %rdi
pushq $0x33
popq %rcx
callq 0x9334a
movq %rbx, (%rax)
popq %rbx
retq
movq 0x338c07(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x1e5ca8(%rip), %rsi    # 0x2e5013
leaq 0x228743(%rip), %rdx    # 0x327ab5
leaq 0x22874d(%rip), %rcx    # 0x327ac6
leaq 0x228718(%rip), %r8     # 0x327a98
pushq $0x32
popq %r9
xorl %eax, %eax
callq 0x17a50
callq 0x17390
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/match_visitor.c
// Function: gt_match_visitor_delete
void gt_match_visitor_delete(GtMatchVisitor *mv)
{
  if (!mv) return;
  gt_assert(mv->c_class);
  if (mv->c_class->free)
    mv->c_class->free(mv);
  gt_free(mv);
}

// Assembly:
pushq %rbx
testq %rdi, %rdi
je 0xff560
movq %rdi, %rbx
movq (%rdi), %rax
testq %rax, %rax
je 0xff562
movq 0x8(%rax), %rax
testq %rax, %rax
je 0xff54d
movq %rbx, %rdi
callq *%rax
leaq 0x228544(%rip), %rsi    # 0x327a98
pushq $0x55
popq %rdx
movq %rbx, %rdi
popq %rbx
jmp 0x936f9
popq %rbx
retq
movq 0x3389ff(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x1e5aa0(%rip), %rsi    # 0x2e5013
leaq 0x228646(%rip), %rdx    # 0x327bc0
leaq 0x22864b(%rip), %rcx    # 0x327bcc
leaq 0x228510(%rip), %r8     # 0x327a98
pushq $0x52
popq %r9
xorl %eax, %eax
callq 0x17a50
callq 0x17390
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/maxcoordvalue.c
// Function: gt_maxcoordvalue_coord_update
void gt_maxcoordvalue_coord_update(GtMaxcoordvalue *max,
                                   GtWord value,
                                   GtUwordPair start,
                                   GtUword enda, GtUword endb)
{
  gt_assert(max != NULL);

  gt_maxcoordvalue_set_value(max, value);
  gt_maxcoordvalue_set_start_with_pair(max, start);
  gt_maxcoordvalue_set_end(max, enda, endb);
}

// Assembly:
testq %rdi, %rdi
je 0xff741
movq %rsi, (%rdi)
movq %rdx, 0x8(%rdi)
movq %rcx, 0x10(%rdi)
movq %r8, 0x18(%rdi)
movq %r9, 0x20(%rdi)
retq
pushq %rax
movq 0x33881f(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x1e58c0(%rip), %rsi    # 0x2e5013
leaq 0x226b03(%rip), %rdx    # 0x32625d
leaq 0x22852d(%rip), %rcx    # 0x327c8e
leaq 0x22847c(%rip), %r8     # 0x327be4
pushq $0x6d
popq %r9
xorl %eax, %eax
callq 0x17a50
callq 0x17390
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/maxcoordvalue.c
// Function: gt_maxcoordvalue_get_row_length
GtUword gt_maxcoordvalue_get_row_length(const GtMaxcoordvalue *max)
{
  gt_assert(max != NULL);

  GtUword end = (gt_maxcoordvalue_get_end(max)).a;
  GtUword start = (gt_maxcoordvalue_get_start(max)).a;

  gt_assert(end >= start);
  return end-start;
}

// Assembly:
pushq %rax
testq %rdi, %rdi
je 0xff7d2
movq 0x18(%rdi), %rax
subq 0x8(%rdi), %rax
jb 0xff800
popq %rcx
retq
movq 0x33878f(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x1e5830(%rip), %rsi    # 0x2e5013
leaq 0x226a73(%rip), %rdx    # 0x32625d
leaq 0x2284e7(%rip), %rcx    # 0x327cd8
leaq 0x2283ec(%rip), %r8     # 0x327be4
movl $0x82, %r9d
jmp 0xff82c
movq 0x338761(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x1e5802(%rip), %rsi    # 0x2e5013
leaq 0x1fface(%rip), %rdx    # 0x2ff2e6
leaq 0x2284b9(%rip), %rcx    # 0x327cd8
leaq 0x2283be(%rip), %r8     # 0x327be4
movl $0x87, %r9d
xorl %eax, %eax
callq 0x17a50
callq 0x17390
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/maxcoordvalue.c
// Function: gt_maxcoordvalue_get_col_length
GtUword gt_maxcoordvalue_get_col_length(const GtMaxcoordvalue *max)
{
  gt_assert(max != NULL);

  GtUword end = (gt_maxcoordvalue_get_end(max)).b;
  GtUword start = (gt_maxcoordvalue_get_start(max)).b;

  gt_assert(end >= start);
  return end-start;
}

// Assembly:
pushq %rax
testq %rdi, %rdi
je 0xff84a
movq 0x20(%rdi), %rax
subq 0x10(%rdi), %rax
jb 0xff878
popq %rcx
retq
movq 0x338717(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x1e57b8(%rip), %rsi    # 0x2e5013
leaq 0x2269fb(%rip), %rdx    # 0x32625d
leaq 0x22848f(%rip), %rcx    # 0x327cf8
leaq 0x228374(%rip), %r8     # 0x327be4
movl $0x8d, %r9d
jmp 0xff8a4
movq 0x3386e9(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x1e578a(%rip), %rsi    # 0x2e5013
leaq 0x1ffa56(%rip), %rdx    # 0x2ff2e6
leaq 0x228461(%rip), %rcx    # 0x327cf8
leaq 0x228346(%rip), %r8     # 0x327be4
movl $0x92, %r9d
xorl %eax, %eax
callq 0x17a50
callq 0x17390
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/maxcoordvalue.c
// Function: gt_maxcoordvalue_get_length_safe
bool gt_maxcoordvalue_get_length_safe(const GtMaxcoordvalue *max)
{
  if (gt_maxcoordvalue_get_end(max).a == gt_maxcoordvalue_get_start(max).a &&
      gt_maxcoordvalue_get_end(max).b == gt_maxcoordvalue_get_start(max).b  )
    return false;
  return true;
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
movq %rdi, %rbx
callq 0xff6e3
movq %rax, %r14
movq %rbx, %rdi
callq 0xff659
cmpq %rax, %r14
jne 0xff8e8
movq %rbx, %rdi
callq 0xff6e3
movq %rdx, %r14
movq %rbx, %rdi
callq 0xff659
cmpq %rdx, %r14
jne 0xff8e8
xorl %eax, %eax
jmp 0xff8ea
movb $0x1, %al
addq $0x8, %rsp
popq %rbx
popq %r14
retq
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/md5_to_id_visitor.c
// Function: gt_md5_to_id_visitor_class
const GtNodeVisitorClass* gt_md5_to_id_visitor_class()
{
  static const GtNodeVisitorClass *nvc = NULL;
  gt_class_alloc_lock_enter();
  if (!nvc) {
    nvc = gt_node_visitor_class_new(sizeof (GtMD5ToSeqidsVisitor),
                                    md5_to_id_visitor_free,
                                    NULL,
                                    md5_to_id_visitor_feature_node,
                                    md5_to_id_visitor_region_node,
                                    NULL,
                                    NULL);
  }
  gt_class_alloc_lock_leave();
  return nvc;
}

// Assembly:
pushq %rax
callq 0x69e97
cmpq $0x0, 0x33ddde(%rip)    # 0x43d780
jne 0xff9d2
andq $0x0, (%rsp)
leaq 0x30(%rip), %rsi        # 0xff9e0
leaq 0x82(%rip), %rcx        # 0xffa39
leaq 0xf9(%rip), %r8         # 0xffab7
pushq $0x18
popq %rdi
xorl %edx, %edx
xorl %r9d, %r9d
callq 0x102cd0
movq %rax, 0x33ddae(%rip)    # 0x43d780
callq 0x69ede
movq 0x33dda2(%rip), %rax    # 0x43d780
popq %rcx
retq
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/md5_to_id_visitor.c
// Function: md5_to_id_visitor_free
static void md5_to_id_visitor_free(GtNodeVisitor *nv)
{
  GtMD5ToSeqidsVisitor *md5_to_id_visitor =
    md5_to_id_visitor_cast(nv);
  gt_assert(md5_to_id_visitor);
  gt_region_mapping_delete(md5_to_id_visitor->region_mapping);
}

// Assembly:
pushq %rbx
movq %rdi, %rbx
callq 0xff994
movq %rax, %rdi
movq %rbx, %rsi
callq 0x102dfe
testq %rax, %rax
je 0xffa03
movq 0x10(%rax), %rdi
popq %rbx
jmp 0x10f7de
movq 0x33855e(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x1e55ff(%rip), %rsi    # 0x2e5013
leaq 0x22834c(%rip), %rdx    # 0x327d67
leaq 0x228357(%rip), %rcx    # 0x327d79
leaq 0x228367(%rip), %r8     # 0x327d90
pushq $0x2a
popq %r9
xorl %eax, %eax
callq 0x17a50
callq 0x17390
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/md5_to_id_visitor.c
// Function: gt_md5_to_id_visitor_new
GtNodeVisitor* gt_md5_to_id_visitor_new(GtRegionMapping *region_mapping)
{
  GtNodeVisitor *nv;
  GtMD5ToSeqidsVisitor *md5_to_id_visitor;
  nv = gt_node_visitor_create(gt_md5_to_id_visitor_class());
  md5_to_id_visitor = md5_to_id_visitor_cast(nv);
  md5_to_id_visitor->region_mapping = region_mapping;
  return nv;
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
movq %rdi, %rbx
callq 0xff994
movq %rax, %rdi
callq 0x102da0
movq %rax, %r14
callq 0xff994
movq %rax, %rdi
movq %r14, %rsi
callq 0x102dfe
movq %rbx, 0x10(%rax)
movq %r14, %rax
addq $0x8, %rsp
popq %rbx
popq %r14
retq
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/md5set.c
// Function: gt_md5set_new
GtMD5Set *gt_md5set_new(GtUword nof_elements)
{
  GtMD5Set *md5set;
  md5set = gt_malloc(sizeof (GtMD5Set));
  md5set->fill = 0;
  md5set->alloc = 0;
  md5set->table = NULL;
  md5set_alloc_table(md5set,
                     md5set_get_size(nof_elements + (nof_elements >> 2)));
  gt_assert(nof_elements < md5set->maxfill);
  md5set->buffer = NULL;
  md5set->bufsize = 0;
  return md5set;
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
movq %rdi, %r14
leaq 0x227e71(%rip), %rsi    # 0x327e3f
pushq $0x30
popq %rdi
movl $0xc7, %edx
callq 0x93160
movq %rax, %rbx
movq %r14, %rdi
shrq $0x2, %rdi
addq %r14, %rdi
xorps %xmm0, %xmm0
movups %xmm0, (%rax)
andq $0x0, 0x10(%rax)
callq 0x100147
movq %rbx, %rdi
movq %rax, %rsi
callq 0x100053
cmpq %r14, 0x18(%rbx)
jbe 0x10001b
xorps %xmm0, %xmm0
movups %xmm0, 0x20(%rbx)
movq %rbx, %rax
addq $0x8, %rsp
popq %rbx
popq %r14
retq
movq 0x337f46(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x1e4fe7(%rip), %rsi    # 0x2e5013
leaq 0x227e22(%rip), %rdx    # 0x327e55
leaq 0x227e3a(%rip), %rcx    # 0x327e74
leaq 0x227dfe(%rip), %r8     # 0x327e3f
movl $0xcd, %r9d
xorl %eax, %eax
callq 0x17a50
callq 0x17390
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/md5set.c
// Function: md5set_alloc_table
static void md5set_alloc_table(GtMD5Set *set, GtUword newsize)
{
  md5_t *oldtable;
  GtUword oldsize;

  oldsize = set->alloc;
  oldtable = set->table;
  set->alloc = newsize;
  set->maxfill =
    (GtUword)((double)newsize * MD5SET_MAX_LOAD_FACTOR);
  set->table = gt_calloc((size_t)newsize, sizeof (md5_t));
  if (oldtable != NULL) {
    gt_log_log("rehashing " GT_WU " elements; old size: " GT_WU ", new size: "
               GT_WU "\n", set->fill, oldsize, newsize);
    md5set_rehash(set, oldtable, oldsize);
    gt_free(oldtable);
  }
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r12
pushq %rbx
movq %rsi, %r12
movq %rdi, %r14
movq (%rdi), %rbx
movq %rsi, %xmm0
punpckldq 0x1e786f(%rip), %xmm0 # xmm0 = xmm0[0],mem[0],xmm0[1],mem[1]
movq 0x8(%rdi), %r15
subpd 0x1e7873(%rip), %xmm0   # 0x2e78f0
movapd %xmm0, %xmm1
unpckhpd %xmm0, %xmm1            # xmm1 = xmm1[1],xmm0[1]
addsd %xmm0, %xmm1
mulsd 0x1ee137(%rip), %xmm1   # 0x2ee1c8
movq %rsi, 0x8(%rdi)
cvttsd2si %xmm1, %rax
movq %rax, %rcx
subsd 0x1e7c7b(%rip), %xmm1   # 0x2e7d20
cvttsd2si %xmm1, %rdx
sarq $0x3f, %rcx
andq %rcx, %rdx
orq %rax, %rdx
movq %rdx, 0x18(%rdi)
leaq 0x227d80(%rip), %rdx    # 0x327e3f
pushq $0x10
popq %rsi
movq %r12, %rdi
movl $0xbb, %ecx
callq 0x9334a
movq %rax, (%r14)
testq %rbx, %rbx
je 0x10013e
movq 0x10(%r14), %rsi
leaq 0x227dd5(%rip), %rdi    # 0x327eb7
movq %r15, %rdx
movq %r12, %rcx
xorl %eax, %eax
callq 0x92a82
andq $0x0, 0x10(%r14)
leaq 0x8(%rbx), %r12
pushq $0x1
popq %rbp
subq $0x1, %r15
jb 0x100122
movq -0x8(%r12), %rsi
movq (%r12), %rdx
movq %rsi, %rax
orq %rdx, %rax
je 0x10011c
movq %r14, %rdi
movl %ebp, %ecx
callq 0x100477
addq $0x10, %r12
jmp 0x1000fb
leaq 0x227d16(%rip), %rsi    # 0x327e3f
movq %rbx, %rdi
movl $0xc0, %edx
popq %rbx
popq %r12
popq %r14
popq %r15
popq %rbp
jmp 0x936f9
popq %rbx
popq %r12
popq %r14
popq %r15
popq %rbp
retq
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/md5set.c
// Function: md5set_get_size
static GtUword md5set_get_size(GtUword n)
{
  GtUint64 u, l, i, k, k_i;

  k = (GtUint64)n;
  if (k > GT_MD5SET_LARGEST_PRIME) {
    fprintf(stderr, MD5SET_TOO_LARGE, k);
    exit(1);
  }
  if (k < gt_md5set_primes[0])
    return (GtUword)gt_md5set_primes[0];
  l = 0;
  u = GT_MD5SET_NOFPRIMES - 1;
  do {
    i = (l + u) >> 1;
    gt_assert(u >= l);
    if (u - l == 1) {
      return (gt_md5set_primes[l] == k)
          ? (GtUword)k
          : (GtUword)gt_md5set_primes[u];
    }
    k_i = gt_md5set_primes[i];
    if (k < k_i) {
      u = i;
    }
    else if (k > k_i) {
      l = i;
    }
    else {
      return (GtUword)k_i;
    }
  } while (1);
  return 0;
}

// Assembly:
pushq %rax
movq %rdi, %rdx
movabsq $0x7fc0002764, %rax     # imm = 0x7FC0002764
cmpq %rax, %rdi
jae 0x1001ea
movl $0x100007, %eax         # imm = 0x100007
cmpq $0x100007, %rdx         # imm = 0x100007
jb 0x1001b2
movl $0x97f, %ecx            # imm = 0x97F
xorl %edi, %edi
leaq 0x227e56(%rip), %rsi    # 0x327fd0
movq %rcx, %r8
movq %r8, %rax
subq %rdi, %rax
jb 0x1001b4
movq %r8, %rcx
cmpq $0x1, %rax
je 0x1001a5
leaq (%rcx,%rdi), %r8
shrq %r8
movq (%rsi,%r8,8), %rax
cmpq %rdx, %rax
ja 0x10017d
movq %r8, %rdi
jb 0x10017a
jmp 0x1001b2
movq %rdx, %rax
cmpq %rdx, (%rsi,%rdi,8)
je 0x1001b2
movq (%rsi,%rcx,8), %rax
popq %rcx
retq
movq 0x337dad(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x1e4e4e(%rip), %rsi    # 0x2e5013
leaq 0x227da1(%rip), %rdx    # 0x327f6d
leaq 0x227da1(%rip), %rcx    # 0x327f74
leaq 0x227c65(%rip), %r8     # 0x327e3f
pushq $0x3e
popq %r9
xorl %eax, %eax
callq 0x17a50
callq 0x17390
movq 0x337d77(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x227cf2(%rip), %rsi    # 0x327eed
xorl %eax, %eax
callq 0x17a50
pushq $0x1
popq %rdi
callq 0x178f0
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/md5set.c
// Function: gt_md5set_delete
void gt_md5set_delete(GtMD5Set *set)
{
  if (set != NULL) {
    gt_free(set->table);
    gt_free(set->buffer);
    gt_free(set);
  }
}

// Assembly:
testq %rdi, %rdi
je 0x100255
pushq %r14
pushq %rbx
pushq %rax
movq %rdi, %rbx
movq (%rdi), %rdi
leaq 0x227c1f(%rip), %r14    # 0x327e3f
movq %r14, %rsi
movl $0xd6, %edx
callq 0x936f9
movq 0x20(%rbx), %rdi
movq %r14, %rsi
movl $0xd7, %edx
callq 0x936f9
movq %rbx, %rdi
movq %r14, %rsi
movl $0xd8, %edx
addq $0x8, %rsp
popq %rbx
popq %r14
jmp 0x936f9
retq
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/md5set.c
// Function: md5set_search
static bool md5set_search(GtMD5Set *set, md5_t k, bool insert_if_not_found)
{
  GtUword i, c;
#ifndef NDEBUG
  GtUword first_i;
#endif
  enum MD5SetSearchResult retval;

  i = (GtUword) MD5SET_H1(k, set->alloc);
  retval = md5set_search_pos(set, k, insert_if_not_found, i);
  if (retval != GT_MD5SET_COLLISION)
    return retval == GT_MD5SET_EMPTY ? false : true;

  /* open addressing by double hashing */
  c = (GtUword) MD5SET_H2(k, set->alloc);
  gt_assert(c > 0);
#ifndef NDEBUG
  first_i = i;
#endif
  while (1) {
    i = (i + c) % set->alloc;
    gt_assert(i != first_i);
    retval = md5set_search_pos(set, k, insert_if_not_found, i);
    if (retval != GT_MD5SET_COLLISION)
      return retval == GT_MD5SET_EMPTY ? false : true;
  }
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
pushq %rax
movl %ecx, %ebp
movq %rdx, %r12
movq %rdi, %r15
movq %rsi, %rax
xorl %edx, %edx
divq 0x8(%rdi)
movq %rdx, %rbx
movq %rsi, (%rsp)
movq %r12, %rdx
movq %rbx, %r8
callq 0x100542
cmpl $0x2, %eax
jne 0x1004f6
movq 0x8(%r15), %rcx
decq %rcx
movq %r12, %r14
movq %r12, %rax
xorl %edx, %edx
divq %rcx
movq %rdx, %r13
incq %r13
movzbl %bpl, %ebp
movq %rbx, %r12
addq %r13, %r12
movq %r12, %rax
xorl %edx, %edx
divq 0x8(%r15)
cmpq %rbx, %rdx
je 0x10050a
movq %rdx, %r12
movq %r15, %rdi
movq (%rsp), %rsi
movq %r14, %rdx
movl %ebp, %ecx
movq %r12, %r8
callq 0x100542
cmpl $0x2, %eax
je 0x1004c9
testl %eax, %eax
setne %al
addq $0x8, %rsp
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
retq
movq 0x337a57(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x1e4af8(%rip), %rsi    # 0x2e5013
leaq 0x227a70(%rip), %rdx    # 0x327f92
leaq 0x227a5b(%rip), %rcx    # 0x327f84
leaq 0x22790f(%rip), %r8     # 0x327e3f
movl $0x9f, %r9d
xorl %eax, %eax
callq 0x17a50
callq 0x17390
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/md5set.c
// Function: md5set_search_pos
static inline enum MD5SetSearchResult md5set_search_pos(GtMD5Set *set,
                                                        md5_t k,
                                                        bool
                                                        insert_if_not_found,
                                                        GtUword i)
{
  if (MD5_T_IS_EMPTY(set->table[i])) {
    if (insert_if_not_found) {
      GT_MD5SET_PREPARE_INSERTION(set);
      set->table[i] = k;
    }
    return GT_MD5SET_EMPTY;
  }
  return (MD5_T_EQUAL(k, set->table[i]))
         ? GT_MD5SET_KEY_FOUND
         : GT_MD5SET_COLLISION;
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r12
pushq %rbx
movq %r8, %r14
movq %rdx, %rbx
movq %rsi, %r15
movq (%rdi), %rax
shlq $0x4, %r14
movq (%rax,%r14), %rdx
addq %r14, %rax
testq %rdx, %rdx
jne 0x10056d
cmpq $0x0, 0x8(%rax)
je 0x10058e
cmpq %r15, %rdx
jne 0x100580
xorl %ebp, %ebp
cmpq %rbx, 0x8(%rax)
setne %bpl
incl %ebp
jmp 0x100583
pushq $0x2
popq %rbp
movl %ebp, %eax
popq %rbx
popq %r12
popq %r14
popq %r15
popq %rbp
retq
xorl %ebp, %ebp
testb %cl, %cl
je 0x100583
movq %rdi, %r12
movq 0x10(%rdi), %rax
movq 0x18(%rdi), %rcx
incq %rax
movq %rax, 0x10(%rdi)
cmpq %rcx, %rax
jbe 0x1005cd
movq 0x8(%r12), %rdi
incq %rdi
callq 0x100147
movq %r12, %rdi
movq %rax, %rsi
callq 0x100053
movq 0x10(%r12), %rax
movq 0x18(%r12), %rcx
cmpq %rcx, %rax
ja 0x1005e1
movq (%r12), %rax
movq %r15, (%rax,%r14)
movq %rbx, 0x8(%rax,%r14)
jmp 0x100583
movq 0x337980(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x1e4a21(%rip), %rsi    # 0x2e5013
leaq 0x2279a6(%rip), %rdx    # 0x327f9f
leaq 0x2279bd(%rip), %rcx    # 0x327fbd
leaq 0x227838(%rip), %r8     # 0x327e3f
pushq $0x78
popq %r9
xorl %eax, %eax
callq 0x17a50
callq 0x17390
nop
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/merge_feature_visitor.c
// Function: gt_merge_feature_visitor_class
const GtNodeVisitorClass* gt_merge_feature_visitor_class()
{
  static const GtNodeVisitorClass *nvc = NULL;
  gt_class_alloc_lock_enter();
  if (!nvc) {
    nvc = gt_node_visitor_class_new(sizeof (GtMergeFeatureVisitor),
                                    merge_feature_visitor_free,
                                    NULL,
                                    merge_feature_visitor_feature_node,
                                    NULL,
                                    NULL,
                                    NULL);
  }
  gt_class_alloc_lock_leave();
  return nvc;
}

// Assembly:
pushq %rax
callq 0x69e97
cmpq $0x0, 0x33d14a(%rip)    # 0x43d788
jne 0x10066a
andq $0x0, (%rsp)
leaq 0x2c(%rip), %rsi        # 0x100678
leaq 0x8a(%rip), %rcx        # 0x1006dd
pushq $0x28
popq %rdi
xorl %edx, %edx
xorl %r8d, %r8d
xorl %r9d, %r9d
callq 0x102cd0
movq %rax, 0x33d11e(%rip)    # 0x43d788
callq 0x69ede
movq 0x33d112(%rip), %rax    # 0x43d788
popq %rcx
retq
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/merge_feature_visitor.c
// Function: merge_feature_visitor_free
static void merge_feature_visitor_free(GtNodeVisitor *nv)
{
  GtMergeFeatureVisitor *merge_feature_visitor =
    gt_merge_feature_visitor_cast(nv);
  gt_assert(merge_feature_visitor);
  gt_hashmap_delete(merge_feature_visitor->hm);
  gt_array_delete(merge_feature_visitor->nodes_to_remove);
}

// Assembly:
pushq %rbx
movq %rdi, %rbx
callq 0x100630
movq %rax, %rdi
movq %rbx, %rsi
callq 0x102dfe
testq %rax, %rax
je 0x1006a7
movq %rax, %rbx
movq 0x18(%rax), %rdi
callq 0x8f933
movq 0x20(%rbx), %rdi
popq %rbx
jmp 0x58eb9
movq 0x3378ba(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x1e495b(%rip), %rsi    # 0x2e5013
leaq 0x22c511(%rip), %rdx    # 0x32cbd0
leaq 0x22c520(%rip), %rcx    # 0x32cbe6
leaq 0x22c534(%rip), %r8     # 0x32cc01
pushq $0x29
popq %r9
xorl %eax, %eax
callq 0x17a50
callq 0x17390
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/merge_feature_visitor.c
// Function: merge_feature_visitor_feature_node
static int merge_feature_visitor_feature_node(GtNodeVisitor *nv,
                                          GtFeatureNode *fn, GtError *err)
{
  GtMergeFeatureVisitor *v;
  GtFeatureNode *leaf;
  GtUword i;
  int had_err = 0;
  gt_error_check(err);
  v = gt_merge_feature_visitor_cast(nv);
  gt_array_reset(v->nodes_to_remove);
  had_err = gt_feature_node_traverse_children(fn, v, mergefeat_if_necessary,
                                              false, err);
  if (!had_err) {
    for (i = 0; i < gt_array_size(v->nodes_to_remove); i++) {
      leaf = *(GtFeatureNode**) gt_array_get(v->nodes_to_remove, i);
      gt_feature_node_remove_leaf(fn, leaf);
    }
  }
  return had_err;
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %rbx
pushq %rax
movq %rdx, %r15
movq %rsi, %rbx
movq %rdi, %r14
testq %rdx, %rdx
je 0x1006fe
movq %r15, %rdi
callq 0x89eb7
testb %al, %al
jne 0x100771
callq 0x100630
movq %rax, %rdi
movq %r14, %rsi
callq 0x102dfe
movq %rax, %r14
movq 0x20(%rax), %rdi
callq 0x5876c
leaq 0xd4(%rip), %rdx        # 0x1007f5
movq %rbx, %rdi
movq %r14, %rsi
xorl %ecx, %ecx
movq %r15, %r8
callq 0xdac92
movl %eax, %ebp
testl %eax, %eax
je 0x100744
movl %ebp, %eax
addq $0x8, %rsp
popq %rbx
popq %r14
popq %r15
popq %rbp
retq
xorl %r15d, %r15d
movq 0x20(%r14), %rdi
callq 0x586a4
cmpq %rax, %r15
jae 0x100737
movq 0x20(%r14), %rdi
movq %r15, %rsi
callq 0x581aa
movq (%rax), %rsi
movq %rbx, %rdi
callq 0xdbdf7
incq %r15
jmp 0x100747
movq 0x3377f0(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x1e4891(%rip), %rsi    # 0x2e5013
leaq 0x1e4a36(%rip), %rdx    # 0x2e51bf
leaq 0x22c496(%rip), %rcx    # 0x32cc26
leaq 0x22c46a(%rip), %r8     # 0x32cc01
pushq $0x65
popq %r9
xorl %eax, %eax
callq 0x17a50
callq 0x17390
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/merge_feature_visitor.c
// Function: gt_merge_feature_visitor_new
GtNodeVisitor* gt_merge_feature_visitor_new(void)
{
  GtNodeVisitor *nv = gt_node_visitor_create(gt_merge_feature_visitor_class());
  GtMergeFeatureVisitor *mfv = gt_merge_feature_visitor_cast(nv);
  mfv->hm = gt_hashmap_new(GT_HASH_STRING, NULL, NULL);
  mfv->nodes_to_remove = gt_array_new(sizeof (GtFeatureNode*));
  return nv;
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
callq 0x100630
movq %rax, %rdi
callq 0x102da0
movq %rax, %rbx
callq 0x100630
movq %rax, %rdi
movq %rbx, %rsi
callq 0x102dfe
movq %rax, %r14
pushq $0x1
popq %rdi
xorl %esi, %esi
xorl %edx, %edx
callq 0x8f330
movq %rax, 0x18(%r14)
pushq $0x8
popq %rdi
callq 0x5809c
movq %rax, 0x20(%r14)
movq %rbx, %rax
addq $0x8, %rsp
popq %rbx
popq %r14
retq
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/merge_feature_visitor.c
// Function: mergefeat_if_necessary
static int mergefeat_if_necessary(GtFeatureNode *fn, void *data, GtError *err)
{
  GtMergeFeatureVisitor *v = (GtMergeFeatureVisitor*) data;
  gt_error_check(err);
  gt_assert(fn);
  v->current_tree = fn;
  gt_hashmap_reset(v->hm);
  return gt_feature_node_traverse_direct_children(fn, v, mergefeat_in_children,
                                                  err);
}

// Assembly:
pushq %r15
pushq %r14
pushq %rbx
movq %rdx, %rbx
movq %rsi, %r14
movq %rdi, %r15
testq %rdx, %rdx
je 0x100814
movq %rbx, %rdi
callq 0x89eb7
testb %al, %al
jne 0x10086a
testq %r15, %r15
je 0x100840
movq %r15, 0x10(%r14)
movq 0x18(%r14), %rdi
callq 0x8f5bc
leaq 0x73(%rip), %rdx        # 0x1008a0
movq %r15, %rdi
movq %r14, %rsi
movq %rbx, %rcx
popq %rbx
popq %r14
popq %r15
jmp 0xdbc10
movq 0x337721(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x1e47c2(%rip), %rsi    # 0x2e5013
leaq 0x27d648(%rip), %rdx    # 0x37dea0
leaq 0x22c3ea(%rip), %rcx    # 0x32cc49
leaq 0x22c39b(%rip), %r8     # 0x32cc01
pushq $0x57
jmp 0x100892
movq 0x3376f7(%rip), %rax    # 0x437f68
movq (%rax), %rdi
leaq 0x1e4798(%rip), %rsi    # 0x2e5013
leaq 0x1e493d(%rip), %rdx    # 0x2e51bf
leaq 0x22c3c0(%rip), %rcx    # 0x32cc49
leaq 0x22c371(%rip), %r8     # 0x32cc01
pushq $0x56
popq %r9
xorl %eax, %eax
callq 0x17a50
callq 0x17390
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/merge_stream.c
// Function: gt_merge_stream_class
const GtNodeStreamClass* gt_merge_stream_class(void)
{
  static const GtNodeStreamClass *nsc = NULL;
  gt_class_alloc_lock_enter();
  if (!nsc) {
    nsc = gt_node_stream_class_new(sizeof (GtMergeStream),
                                   merge_stream_free,
                                   merge_stream_next);
  }
  gt_class_alloc_lock_leave();
  return nsc;
}

// Assembly:
pushq %rax
callq 0x69e97
cmpq $0x0, 0x33ccee(%rip)    # 0x43d790
jne 0x100ac1
leaq 0x24(%rip), %rsi        # 0x100acf
leaq 0xa7(%rip), %rdx        # 0x100b59
pushq $0x40
popq %rdi
callq 0x102838
movq %rax, 0x33cccf(%rip)    # 0x43d790
callq 0x69ede
movq 0x33ccc3(%rip), %rax    # 0x43d790
popq %rcx
retq