// File: /workspace/github_c_makefile_star2_O1/genometools[P]genometools/src/core/encseq.c
// Function: gt_encseq_builder_add_encoded_generic
static void gt_encseq_builder_add_encoded_generic(GtEncseqBuilder *eb,
                                                  const GtUchar *str,
                                                  GtUword strlen,
                                                  const char *desc,
                                                  bool copy)
{
  GtUword i, offset;
  gt_assert(eb && str);
  if (eb->plainseq == NULL) {
    if (!copy) {
      eb->plainseq = (GtUchar*) str;
      eb->own = false;
    } else {
      eb->plainseq = gt_malloc((size_t) strlen * sizeof (GtUchar));
      eb->allocated = (size_t) (strlen * sizeof (GtUchar));
      memcpy(eb->plainseq, str, (size_t) strlen * sizeof (GtUchar));
      eb->own = true;
    }
    eb->seqlen = strlen;
    eb->firstseq = false;
    eb->nof_seqs++;
    if (eb->wdestab) {
      gt_assert(desc);
      gt_str_append_cstr(eb->destab, desc);
      gt_str_append_char(eb->destab, '\n');
      /* store description separator position, if not first description */
      if (eb->wsdstab) {
        GT_STOREINARRAY(&eb->sdstab, GtUword, 128,
                        gt_str_length(eb->destab)-1);
      }
      eb->firstdesc = false;
    }
  } else {
    if (!eb->own) {
      GtUchar *theirseq = eb->plainseq;
      eb->plainseq = gt_malloc((size_t) eb->seqlen * sizeof (GtUchar));
      eb->allocated = (size_t) (eb->seqlen * sizeof (GtUchar));
      memcpy(eb->plainseq, theirseq, (size_t) eb->seqlen);
    }
    /* store separator position if needed */
    if (eb->wssptab && !eb->firstseq) {
      GT_STOREINARRAY(&eb->ssptab, GtUword, 128, eb->seqlen);
    }
    /* from the second sequence on, add a separator before adding symbols */
    if (!eb->firstseq) {
      eb->plainseq = gt_dynalloc(eb->plainseq, &eb->allocated,
                                 (eb->seqlen + strlen+1) * sizeof (GtUchar));
      eb->plainseq[eb->seqlen] = (GtUchar) GT_SEPARATOR;
      offset = eb->seqlen+1;
      eb->seqlen += strlen+1;
    } else {
      eb->plainseq = gt_dynalloc(eb->plainseq, &eb->allocated,
                                 strlen * sizeof (GtUchar));
      offset = 0;
      eb->seqlen = strlen;
      eb->firstseq = false;
    }
    /* append description to in-memory description table */
    if (eb->wdestab) {
      gt_assert(desc);
      gt_str_append_cstr(eb->destab, desc);
      gt_str_append_char(eb->destab, '\n');
      eb->firstdesc = false;
      /* store description separator position, if not first description */
      if (eb->wsdstab) {
        GT_STOREINARRAY(&eb->sdstab, GtUword, 128,
                        gt_str_length(eb->destab)-1);
      }

    }
    for (i=0;i < strlen; i++) {
      eb->plainseq[offset+i] = str[i];
    }
    eb->nof_seqs++;
    eb->own = true;
  }
  if (eb->minseqlen == GT_UNDEF_UWORD || strlen < eb->minseqlen)
    eb->minseqlen = strlen;
  if (eb->maxseqlen == GT_UNDEF_UWORD || strlen > eb->maxseqlen)
    eb->maxseqlen = strlen;
}

// Assembly:
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
testq %rdi, %rdi
je 0xca064
movq %rsi, %r15
testq %rsi, %rsi
je 0xca064
movq %rcx, %r12
movq %rdx, %rbx
movq %rdi, %r14
movq (%rdi), %r13
testq %r13, %r13
je 0xc9e53
cmpb $0x0, 0x68(%r14)
jne 0xc9dc7
movq 0x8(%r14), %rdi
leaq 0x38c83(%rip), %rsi     # 0x102a2a
movl $0x233f, %edx           # imm = 0x233F
callq 0x35ee2
movq %rax, (%r14)
movq 0x8(%r14), %rdx
movq %rdx, 0x60(%r14)
movq %rax, %rdi
movq %r13, %rsi
callq 0xb520
cmpb $0x1, 0x6b(%r14)
jne 0xc9e2c
cmpb $0x0, 0x6e(%r14)
jne 0xc9e2c
movq 0x48(%r14), %rax
cmpq %rax, 0x50(%r14)
jb 0xc9e0b
leaq 0x80(%rax), %rcx
movq %rcx, 0x48(%r14)
movq 0x40(%r14), %rdi
leaq 0x400(,%rax,8), %rsi
leaq 0x38c2d(%rip), %rdx     # 0x102a2a
movl $0x2345, %ecx           # imm = 0x2345
callq 0x36116
movq %rax, 0x40(%r14)
movq 0x40(%r14), %rax
testq %rax, %rax
je 0xca073
movq 0x8(%r14), %rcx
movq 0x50(%r14), %rdx
leaq 0x1(%rdx), %rsi
movq %rsi, 0x50(%r14)
movq %rcx, (%rax,%rdx,8)
movq (%r14), %rdi
leaq 0x60(%r14), %rsi
cmpb $0x0, 0x6e(%r14)
je 0xc9e8c
movq %rbx, %rdx
callq 0x73b98
movq %rax, (%r14)
movq %rbx, 0x8(%r14)
movb $0x0, 0x6e(%r14)
xorl %r13d, %r13d
jmp 0xc9eb6
testb %r8b, %r8b
je 0xc9f7b
leaq 0x38bc7(%rip), %rsi     # 0x102a2a
movq %rbx, %rdi
movl $0x2329, %edx           # imm = 0x2329
callq 0x35ee2
movq %rax, (%r14)
movq %rbx, 0x60(%r14)
movq %rax, %rdi
movq %r15, %rsi
movq %rbx, %rdx
callq 0xb520
movb $0x1, %al
jmp 0xc9f80
leaq 0x1(%rbx), %rdx
addq 0x8(%r14), %rdx
callq 0x73b98
movq %rax, (%r14)
movq 0x8(%r14), %rcx
movb $-0x1, (%rax,%rcx)
movq 0x8(%r14), %r13
leaq (%rbx,%r13), %rax
incq %rax
incq %r13
movq %rax, 0x8(%r14)
cmpb $0x1, 0x6a(%r14)
jne 0xc9f51
testq %r12, %r12
je 0xca069
movq 0x58(%r14), %rdi
movq %r12, %rsi
callq 0x3c067
movq 0x58(%r14), %rdi
movl $0xa, %esi
callq 0x3c28d
movb $0x0, 0x6d(%r14)
cmpb $0x1, 0x6c(%r14)
jne 0xc9f51
movq 0x30(%r14), %rax
cmpq %rax, 0x38(%r14)
jb 0xc9f26
leaq 0x80(%rax), %rcx
movq %rcx, 0x30(%r14)
movq 0x28(%r14), %rdi
leaq 0x400(,%rax,8), %rsi
leaq 0x38b12(%rip), %rdx     # 0x102a2a
movl $0x235e, %ecx           # imm = 0x235E
callq 0x36116
movq %rax, 0x28(%r14)
cmpq $0x0, 0x28(%r14)
je 0xca078
movq 0x58(%r14), %rdi
callq 0x3c434
decq %rax
movq 0x28(%r14), %rcx
movq 0x38(%r14), %rdx
leaq 0x1(%rdx), %rsi
movq %rsi, 0x38(%r14)
movq %rax, (%rcx,%rdx,8)
testq %rbx, %rbx
je 0xc9f6d
xorl %eax, %eax
movb (%r15,%rax), %cl
movq (%r14), %rdx
addq %r13, %rdx
movb %cl, (%rax,%rdx)
incq %rax
cmpq %rax, %rbx
jne 0xc9f58
incq 0x10(%r14)
movb $0x1, 0x68(%r14)
jmp 0xca028
movq %r15, (%r14)
xorl %eax, %eax
movb %al, 0x68(%r14)
movq %rbx, 0x8(%r14)
movb $0x0, 0x6e(%r14)
incq 0x10(%r14)
cmpb $0x1, 0x6a(%r14)
jne 0xca028
testq %r12, %r12
je 0xca06e
movq 0x58(%r14), %rdi
movq %r12, %rsi
callq 0x3c067
movq 0x58(%r14), %rdi
movl $0xa, %esi
callq 0x3c28d
cmpb $0x1, 0x6c(%r14)
jne 0xca023
movq 0x30(%r14), %rax
cmpq %rax, 0x38(%r14)
jb 0xc9ffc
leaq 0x80(%rax), %rcx
movq %rcx, 0x30(%r14)
movq 0x28(%r14), %rdi
leaq 0x400(,%rax,8), %rsi
leaq 0x38a3c(%rip), %rdx     # 0x102a2a
movl $0x2338, %ecx           # imm = 0x2338
callq 0x36116
movq %rax, 0x28(%r14)
cmpq $0x0, 0x28(%r14)
je 0xca07d
movq 0x58(%r14), %rdi
callq 0x3c434
decq %rax
movq 0x28(%r14), %rcx
movq 0x38(%r14), %rdx
leaq 0x1(%rdx), %rsi
movq %rsi, 0x38(%r14)
movq %rax, (%rcx,%rdx,8)
movb $0x0, 0x6d(%r14)
movq 0x18(%r14), %rax
cmpq $-0x1, %rax
setne %cl
cmpq %rbx, %rax
setbe %al
testb %al, %cl
jne 0xca041
movq %rbx, 0x18(%r14)
movq 0x20(%r14), %rax
cmpq $-0x1, %rax
setne %cl
cmpq %rbx, %rax
setae %al
testb %al, %cl
jne 0xca05a
movq %rbx, 0x20(%r14)
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
retq
callq 0x2e415
callq 0x2e4c0
callq 0x2e532
callq 0x2e44e
callq 0x2e487
callq 0x2e4f9