// File: /workspace/github_c_makefile_star2_O3/icebert[P]pblat/jkOwnLib/gfOut.c
// Function: pslOut
static void pslOut(char *chromName, int chromSize, int chromOffset, struct ffAli *ali, 
	struct dnaSeq *tSeq, struct hash *t3Hash, struct dnaSeq *qSeq, 
	boolean qIsRc, boolean tIsRc, 
	enum ffStringency stringency, int minMatch, struct gfOutput *out)
/* Save psl for more complex alignments. */
{
struct pslxData *outForm = out->data;

savePslx(chromName, chromSize, chromOffset, ali, tSeq, qSeq,
    qIsRc, stringency, minMatch, outForm->f, t3Hash, 
    out->reportTargetStrand, tIsRc,
    out->maskHash, out->minGood, 
    out->qIsProt, out->tIsProt, outForm->saveSeq);
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
subq $0xb8, %rsp
movq %r9, %r14
movq %r8, %rbp
movq %rcx, %r13
movq %rdx, 0x70(%rsp)
movq %rsi, 0x68(%rsp)
movq %rdi, 0x98(%rsp)
movq 0xf0(%rsp), %r12
movq 0x118(%rsp), %rax
movq 0x8(%rax), %rcx
movq (%rcx), %rdx
movq %rdx, 0x60(%rsp)
movl 0x28(%rax), %edx
movl %edx, 0x54(%rsp)
movq 0x30(%rax), %r15
movl 0x38(%rax), %eax
movl %eax, 0x5c(%rsp)
movl 0x8(%rcx), %eax
movl %eax, 0x58(%rsp)
movq %r13, %rdi
callq 0x28286
movq %rax, %rbx
movq 0x10(%r12), %rax
movq %rax, 0x78(%rsp)
movq 0x10(%rbp), %rax
movq %rax, 0x20(%rsp)
movl 0x10(%r13), %r12d
movl 0x18(%rbx), %eax
movl %eax, (%rsp)
testq %r15, %r15
je 0x1374e
movq 0x8(%rbp), %rsi
movq %r15, %rdi
callq 0x29361
jmp 0x13750
xorl %eax, %eax
movq %rax, 0x40(%rsp)
movq $0x0, 0x30(%rsp)
testq %r14, %r14
je 0x13774
movq 0x8(%rbp), %rsi
movq %r14, %rdi
callq 0x29361
movq %rax, %r14
jmp 0x13777
xorl %r14d, %r14d
movq 0x78(%rsp), %rcx
subl %ecx, %r12d
movl %r12d, 0x4(%rsp)
subl %ecx, (%rsp)
movq 0x20(%r13), %rdi
movq %rbp, %rsi
movq %r14, %rdx
xorl %ecx, %ecx
callq 0x15f64
movl %eax, 0x50(%rsp)
movq 0x28(%rbx), %rdi
movq %rbp, 0x88(%rsp)
movq %rbp, %rsi
movq %r14, %rdx
movl $0x1, %ecx
callq 0x15f64
movl %eax, 0x4c(%rsp)
movq 0x10(%r13), %r15
movq 0x20(%rsp), %rax
negl %eax
movq %rax, 0x20(%rsp)
movq %r13, 0xa0(%rsp)
movq $0x0, 0x10(%rsp)
movq $0x0, 0x28(%rsp)
movq $0x0, 0x8(%rsp)
xorl %r8d, %r8d
xorl %ebp, %ebp
movq $0x0, 0x18(%rsp)
xorl %r12d, %r12d
movq %r14, 0x80(%rsp)
movq 0x8(%r13), %rcx
movq %rcx, 0x90(%rsp)
movq 0x18(%r13), %r9
subq %r15, %r9
testl %r9d, %r9d
movq 0x40(%rsp), %rsi
movq %r13, 0xa8(%rsp)
jle 0x138da
movq 0x20(%r13), %rdx
andl $0x7fffffff, %r9d       # imm = 0x7FFFFFFF
movq 0x20(%rsp), %rax
addl %edx, %eax
movq %rax, 0xb0(%rsp)
xorl %r14d, %r14d
movq %rdx, 0x38(%rsp)
movb (%r15,%r14), %al
cmpb $0x6e, %al
je 0x138c2
movb (%rdx,%r14), %cl
cmpb $0x6e, %cl
je 0x138c2
cmpb %cl, %al
jne 0x138c7
testq %rsi, %rsi
je 0x138cb
movq 0xb0(%rsp), %rax
leal (%rax,%r14), %esi
movq 0x40(%rsp), %rdi
movl %r12d, %ebx
movl %ebp, %r12d
movq %r8, %rbp
movq %r9, %r13
callq 0x1bc74
movq %r13, %r9
movq 0x40(%rsp), %rsi
movq %rbp, %r8
movl %r12d, %ebp
movl %ebx, %r12d
xorl %ecx, %ecx
xorl %edx, %edx
testl %eax, %eax
sete %cl
setne %dl
movq 0x18(%rsp), %rax
addl %edx, %eax
movq 0x38(%rsp), %rdx
movq %rax, 0x18(%rsp)
addl %ecx, %r8d
jmp 0x138ce
incl %r12d
jmp 0x138ce
incl %ebp
jmp 0x138ce
incl %r8d
incq %r14
cmpq %r14, %r9
jne 0x13853
movq 0x90(%rsp), %rax
testq %rax, %rax
je 0x13991
movq 0x20(%rax), %rdi
movq 0x88(%rsp), %r15
movq %r15, %rsi
movq 0x80(%rsp), %rbx
movq %rbx, %rdx
xorl %ecx, %ecx
movq %r8, 0x38(%rsp)
callq 0x15f64
movl %eax, %r13d
movq 0xa8(%rsp), %r14
movq 0x28(%r14), %rdi
movq %r15, %rsi
movq %rbx, %rdx
movl $0x1, %ecx
callq 0x15f64
movq 0x38(%rsp), %r8
movq 0x90(%rsp), %rsi
movq 0x10(%rsi), %r15
movl 0x18(%r14), %ecx
movl %r15d, %edx
subl %ecx, %edx
movq 0x30(%rsp), %rcx
addl %edx, %ecx
movq %rcx, 0x30(%rsp)
cmpl $0x1, %edx
movq 0x10(%rsp), %rcx
sbbl $-0x1, %ecx
movq %rcx, 0x10(%rsp)
xorl %ecx, %ecx
cmpl %eax, %r13d
setne %cl
movq 0x28(%rsp), %rdx
addl %r13d, %edx
subl %eax, %edx
movq %rdx, 0x28(%rsp)
movq 0x8(%rsp), %rax
addl %ecx, %eax
movq %rax, 0x8(%rsp)
movq %rsi, %r13
jmp 0x13808
movq 0x18(%rsp), %rax
leal (%r8,%rax), %esi
movl %esi, %edx
addl %ebp, %edx
jle 0x13c36
xorl %eax, %eax
cmpl $0x1, 0x108(%rsp)
cmovnel 0x8(%rsp), %eax
addl 0x10(%rsp), %eax
addl %eax, %eax
subl %eax, %esi
movl $0x3e8, %edi            # imm = 0x3E8
movq %r8, %rbx
callq 0x238f9
cmpl 0x5c(%rsp), %eax
jl 0x13c36
movq %rbx, %rdx
movq 0x70(%rsp), %rax
movl 0x50(%rsp), %edi
addl %eax, %edi
movl 0x4c(%rsp), %ecx
addl %eax, %ecx
movl %ecx, %eax
cmpl $0x0, 0xf8(%rsp)
je 0x13a19
movl %eax, %esi
movq 0xf0(%rsp), %rax
movl 0x18(%rax), %eax
movl %eax, %ecx
subl (%rsp), %ecx
subl 0x4(%rsp), %eax
movl $0x2d, %r10d
movl %eax, (%rsp)
movl %esi, %eax
movl %ecx, 0x4(%rsp)
jmp 0x13a1f
movl $0x2b, %r10d
movq 0x60(%rsp), %r13
movl 0x100(%rsp), %ebx
movq 0x68(%rsp), %r15
movl %r15d, %r14d
subl %eax, %r14d
subl %edi, %r15d
testl %ebx, %ebx
cmovel %eax, %r15d
cmovel %edi, %r14d
subq $0x8, %rsp
leaq 0x7a85c(%rip), %rsi     # 0x8e2aa
movq %r13, %rdi
movl %ebp, %ecx
movq 0x20(%rsp), %r8
movl %r12d, %r9d
xorl %eax, %eax
pushq %r10
pushq 0x38(%rsp)
pushq 0x20(%rsp)
pushq 0x50(%rsp)
pushq 0x38(%rsp)
callq 0x6a90
addq $0x30, %rsp
cmpl $0x0, 0x54(%rsp)
je 0x13a95
xorl %eax, %eax
testl %ebx, %ebx
setne %al
leal 0x2b(,%rax,2), %edi
movq %r13, %rsi
callq 0x6930
movq 0xf0(%rsp), %rax
movq 0x8(%rax), %rbx
movl 0x18(%rax), %ebp
movq 0xa0(%rsp), %r12
movq %r12, %rdi
callq 0x2831c
movl %eax, %r10d
subq $0x8, %rsp
leaq 0x7a803(%rip), %rsi     # 0x8e2c5
movq %r13, %rdi
movq %rbx, %rdx
movl %ebp, %ecx
movl 0xc(%rsp), %r8d
movl 0x8(%rsp), %r9d
xorl %eax, %eax
pushq %r10
pushq %r15
pushq %r14
pushq 0x88(%rsp)
pushq 0xc0(%rsp)
callq 0x6a90
addq $0x30, %rsp
leaq 0x7a7e8(%rip), %rbx     # 0x8e2e2
movq %r12, %r14
movq 0x18(%r14), %rdx
subq 0x10(%r14), %rdx
movq %r13, %rdi
movq %rbx, %rsi
xorl %eax, %eax
callq 0x6a90
movq 0x8(%r14), %r14
testq %r14, %r14
jne 0x13afd
movl $0x9, %edi
movq %r13, %rsi
callq 0x6930
movq %r12, %r14
movq 0x88(%rsp), %r15
movq 0x70(%rsp), %rbp
movq 0x78(%rsp), %rbx
movq 0x10(%r14), %rdx
subq %rbx, %rdx
movq %r13, %rdi
leaq 0x7a794(%rip), %rsi     # 0x8e2e2
xorl %eax, %eax
callq 0x6a90
movq 0x8(%r14), %r14
testq %r14, %r14
jne 0x13b3d
movl $0x9, %edi
movq %r13, %rsi
callq 0x6930
movq %r12, %r14
movq 0x80(%rsp), %rbx
movq 0x20(%r14), %rdi
movq %r15, %rsi
movq %rbx, %rdx
xorl %ecx, %ecx
callq 0x15f64
leal (%rax,%rbp), %edx
movq %r13, %rdi
leaq 0x7a753(%rip), %rsi     # 0x8e2e7
xorl %eax, %eax
callq 0x6a90
movq 0x8(%r14), %r14
testq %r14, %r14
jne 0x13b76
cmpl $0x0, 0x58(%rsp)
je 0x13c1d
movl $0x9, %edi
movq %r13, %rsi
callq 0x6930
movq %r12, %rbx
movq 0x10(%rbx), %rsi
movq 0x18(%rbx), %rdx
subq %rsi, %rdx
movq %r13, %rdi
callq 0x23138
movl $0x2c, %edi
movq %r13, %rsi
callq 0x6930
movq 0x8(%rbx), %rbx
testq %rbx, %rbx
jne 0x13bbb
movl $0x9, %edi
movq %r13, %rsi
callq 0x6930
movq 0x20(%r12), %rsi
movq 0x28(%r12), %rdx
subq %rsi, %rdx
movq %r13, %rdi
callq 0x23138
movl $0x2c, %edi
movq %r13, %rsi
callq 0x6930
movq 0x8(%r12), %r12
testq %r12, %r12
jne 0x13bf1
movl $0xa, %edi
movq %r13, %rsi
callq 0x6930
movq %r13, %rdi
callq 0x6e00
testl %eax, %eax
jne 0x13c48
addq $0xb8, %rsp
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
retq
callq 0x6ea0
jmp 0x13c36