LLM4Binary/decompile-bench-makefile huggingface dataset:
// File: /workspace/github_cpp_makefile_star2_O3/auton1[P]viterbi/header.cpp
// Function: header::double2str[abi:cxx11](double, double)
string header::double2str(const double in, const double missing_value)
{
	if (in == missing_value)
		return ".";
	else
	{
		static ostringstream out;
		out.str(""); out.clear();
		out << in;
		return out.str();
	}
}

// Assembly:
pushq %r14
pushq %rbx
subq $0x28, %rsp
movq %rdi, %rbx
ucomisd %xmm1, %xmm0
jne 0x173ae
jp 0x173ae
leaq 0x10(%rbx), %rax
movq %rax, (%rbx)
leaq 0x21e53(%rip), %rsi     # 0x391ed
leaq 0x21e4d(%rip), %rdx     # 0x391ee
movq %rbx, %rdi
callq 0xc85e
jmp 0x17436
movsd %xmm0, (%rsp)
movb 0x32697(%rip), %al      # 0x49a50
testb %al, %al
je 0x17441
leaq 0x18(%rsp), %r14
movq %r14, -0x10(%r14)
leaq 0x22b06(%rip), %rdx     # 0x39ed7
leaq 0x8(%rsp), %rdi
movq %rdx, %rsi
callq 0xc85e
leaq 0x324fb(%rip), %rdi     # 0x498e0
leaq 0x8(%rsp), %rsi
callq 0x5640
movq 0x8(%rsp), %rdi
cmpq %r14, %rdi
je 0x173fe
callq 0x5410
movq 0x324d3(%rip), %rax     # 0x498d8
leaq 0x324cc(%rip), %r14     # 0x498d8
movq -0x18(%rax), %rdi
addq %r14, %rdi
xorl %esi, %esi
callq 0x5750
movq %r14, %rdi
movsd (%rsp), %xmm0
callq 0x56e0
leaq 0x324b2(%rip), %rsi     # 0x498e0
movq %rbx, %rdi
callq 0x56c0
movq %rbx, %rax
addq $0x28, %rsp
popq %rbx
popq %r14
retq
leaq 0x32608(%rip), %rdi     # 0x49a50
callq 0x5810
testl %eax, %eax
je 0x173c1
leaq 0x3247c(%rip), %rdi     # 0x498d8
callq 0x55d0
movq 0x31b08(%rip), %rdi     # 0x48f70
leaq 0x32469(%rip), %rsi     # 0x498d8
leaq 0x31fe2(%rip), %rdx     # 0x49458
callq 0x53d0
leaq 0x325ce(%rip), %rdi     # 0x49a50
callq 0x5270
jmp 0x173c1
movq %rax, %rbx
leaq 0x325ba(%rip), %rdi     # 0x49a50
callq 0x5250
jmp 0x174b4
movq %rax, %rbx
movq 0x8(%rsp), %rdi
cmpq %r14, %rdi
je 0x174b4
callq 0x5410
jmp 0x174b4
movq %rax, %rbx
movq %rbx, %rdi
callq 0x57d0
// File: /workspace/github_cpp_makefile_star2_O3/auton1[P]viterbi/bcf_entry.cpp
// Function: bcf_entry::reset(std::vector<char, std::allocator<char>> const&)
void bcf_entry::reset(const vector<char> &data_line)
{
	basic_parsed = false;
	fully_parsed = false;
	parsed_ALT = false;
	parsed_FILTER = false;
	parsed_INFO = false;
	parsed_FORMAT = false;
	parsed_FORMAT_binary = false;
	passed_filters = true;

	line = data_line;

	fill(parsed_GT.begin(), parsed_GT.end(), false);
	fill(parsed_GQ.begin(), parsed_GQ.end(), false);
	fill(parsed_DP.begin(), parsed_DP.end(), false);
	fill(parsed_FT.begin(), parsed_FT.end(), false);
	fill(include_genotype.begin(), include_genotype.end(), true);

	INFO_pos = 0; FILTER_pos = 0; ALT_pos = 0; FORMAT_pos = 0;
	FORMAT_positions.clear(); FORMAT_types.clear(); FORMAT_sizes.clear(); FORMAT_skip.clear(); FORMAT_keys.clear();
	N_INFO_removed = 0; N_FORMAT_removed = 0;
}

// Assembly:
pushq %rbp
pushq %r14
pushq %rbx
movq %rdi, %rbx
xorl %eax, %eax
movl %eax, 0x3db(%rdi)
movl %eax, 0x3d8(%rdi)
movb $0x1, 0xc(%rdi)
addq $0x3c0, %rdi            # imm = 0x3C0
callq 0x1137c
movq 0x560(%rbx), %rdi
movq 0x570(%rbx), %r14
movl 0x578(%rbx), %ebp
cmpq %r14, %rdi
je 0x186cf
movq %r14, %rdx
subq %rdi, %rdx
xorl %esi, %esi
callq 0x5200
jmp 0x186d2
movq %rdi, %r14
testl %ebp, %ebp
je 0x186eb
negb %bpl
movq $-0x1, %rax
movl %ebp, %ecx
shrq %cl, %rax
notq %rax
andq %rax, (%r14)
movq 0x588(%rbx), %rdi
movq 0x598(%rbx), %r14
movl 0x5a0(%rbx), %ebp
cmpq %r14, %rdi
je 0x18713
movq %r14, %rdx
subq %rdi, %rdx
xorl %esi, %esi
callq 0x5200
jmp 0x18716
movq %rdi, %r14
testl %ebp, %ebp
je 0x1872f
negb %bpl
movq $-0x1, %rax
movl %ebp, %ecx
shrq %cl, %rax
notq %rax
andq %rax, (%r14)
movq 0x5b0(%rbx), %rdi
movq 0x5c0(%rbx), %r14
movl 0x5c8(%rbx), %ebp
cmpq %r14, %rdi
je 0x18757
movq %r14, %rdx
subq %rdi, %rdx
xorl %esi, %esi
callq 0x5200
jmp 0x1875a
movq %rdi, %r14
testl %ebp, %ebp
je 0x18773
negb %bpl
movq $-0x1, %rax
movl %ebp, %ecx
shrq %cl, %rax
notq %rax
andq %rax, (%r14)
movq 0x5d8(%rbx), %rdi
movq 0x5e8(%rbx), %r14
movl 0x5f0(%rbx), %ebp
cmpq %r14, %rdi
je 0x1879b
movq %r14, %rdx
subq %rdi, %rdx
xorl %esi, %esi
callq 0x5200
jmp 0x1879e
movq %rdi, %r14
testl %ebp, %ebp
je 0x187b7
negb %bpl
movq $-0x1, %rax
movl %ebp, %ecx
shrq %cl, %rax
notq %rax
andq %rax, (%r14)
movq 0x218(%rbx), %rdi
movq 0x228(%rbx), %r14
movl 0x230(%rbx), %ebp
cmpq %r14, %rdi
je 0x187e2
movq %r14, %rdx
subq %rdi, %rdx
movl $0xff, %esi
callq 0x5200
jmp 0x187e5
movq %rdi, %r14
testl %ebp, %ebp
je 0x187fb
negb %bpl
movq $-0x1, %rax
movl %ebp, %ecx
shrq %cl, %rax
orq %rax, (%r14)
xorps %xmm0, %xmm0
movups %xmm0, 0x6e8(%rbx)
movq 0x640(%rbx), %rax
cmpq %rax, 0x648(%rbx)
je 0x1881c
movq %rax, 0x648(%rbx)
movq 0x658(%rbx), %rax
cmpq %rax, 0x660(%rbx)
je 0x18833
movq %rax, 0x660(%rbx)
movq 0x670(%rbx), %rax
cmpq %rax, 0x678(%rbx)
je 0x1884a
movq %rax, 0x678(%rbx)
movq 0x688(%rbx), %rax
cmpq %rax, 0x690(%rbx)
je 0x18861
movq %rax, 0x690(%rbx)
movq 0x6a0(%rbx), %rax
cmpq %rax, 0x6a8(%rbx)
je 0x18878
movq %rax, 0x6a8(%rbx)
movq $0x0, 0x4c8(%rbx)
popq %rbx
popq %r14
popq %rbp
retq
// File: /workspace/github_cpp_makefile_star2_O3/auton1[P]viterbi/bcf_entry.cpp
// Function: bcf_entry::parse_full_entry(bool)
void bcf_entry::parse_full_entry(bool parse_FORMAT)
{
	if (fully_parsed)
		return;

	if (basic_parsed == false)
		parse_basic_entry();

	FORMAT_pos = L_shared + 2*sizeof(uint32_t);
	FORMAT_positions.resize(N_format);
	FORMAT_types.resize(N_format);
	FORMAT_sizes.resize(N_format);
	FORMAT_skip.resize(N_format);
	FORMAT_keys.resize(N_format);

	if (parse_FORMAT)
		set_FORMAT();

	fully_parsed = true;
}

// Assembly:
cmpb $0x0, 0x3d9(%rdi)
jne 0x18c6c
pushq %rbp
pushq %rbx
pushq %rax
movl %esi, %ebp
movq %rdi, %rbx
cmpb $0x0, 0x3d8(%rdi)
jne 0x18be9
movq (%rbx), %rax
movq %rbx, %rdi
xorl %esi, %esi
xorl %edx, %edx
xorl %ecx, %ecx
callq *0x10(%rax)
movl 0x6bc(%rbx), %esi
movl 0x6c4(%rbx), %eax
addl $0x8, %eax
movl %eax, 0x6f4(%rbx)
leaq 0x640(%rbx), %rdi
callq 0x1b294
leaq 0x658(%rbx), %rdi
movl 0x6bc(%rbx), %esi
callq 0x1b294
leaq 0x670(%rbx), %rdi
movl 0x6bc(%rbx), %esi
callq 0x1b294
leaq 0x688(%rbx), %rdi
movl 0x6bc(%rbx), %esi
callq 0x1b294
leaq 0x6a0(%rbx), %rdi
movl 0x6bc(%rbx), %esi
callq 0x1b294
testb %bpl, %bpl
je 0x18c5f
movq %rbx, %rdi
callq 0x27570
movb $0x1, 0x3d9(%rbx)
addq $0x8, %rsp
popq %rbx
popq %rbp
retq
nop
// File: /workspace/github_cpp_makefile_star2_O3/auton1[P]viterbi/bcf_entry.cpp
// Function: bcf_entry::filter_genotypes_by_quality(double)
void bcf_entry::filter_genotypes_by_quality(double min_genotype_quality)
{
	if (fully_parsed == false)
		parse_full_entry();

	if (GQ_idx != -1)
	{	// Have quality info
		double quality;
		for (unsigned int ui=0; ui<N_indv; ui++)
		{
			if (parsed_GQ[ui] == false)
				parse_genotype_entry(ui, false, true);
			quality = get_indv_GQUALITY(ui);
			if (quality < min_genotype_quality)
				include_genotype[ui] = false;
		}
	}
}

// Assembly:
pushq %r15
pushq %r14
pushq %r12
pushq %rbx
pushq %rax
movsd %xmm0, (%rsp)
movq %rdi, %rbx
cmpb $0x0, 0x3d9(%rdi)
jne 0x18c95
movq (%rbx), %rax
movq %rbx, %rdi
movl $0x1, %esi
callq *0x18(%rax)
cmpl $-0x1, 0x634(%rbx)
je 0x18d11
cmpl $0x0, 0x8(%rbx)
je 0x18d11
xorl %r14d, %r14d
movq 0x588(%rbx), %rax
movl $0x1, %r15d
movl %r14d, %ecx
shlq %cl, %r15
movl %r14d, %r12d
shrl $0x6, %r12d
movq (%rax,%r12,8), %rax
btq %r14, %rax
jb 0x18ce4
movq (%rbx), %rax
movq %rbx, %rdi
movl %r14d, %esi
xorl %edx, %edx
movl $0x1, %ecx
xorl %r8d, %r8d
xorl %r9d, %r9d
callq *0x20(%rax)
movq %rbx, %rdi
movl %r14d, %esi
callq 0x22c2e
movsd (%rsp), %xmm1
ucomisd %xmm0, %xmm1
jbe 0x18d08
movq 0x218(%rbx), %rax
notq %r15
andq %r15, (%rax,%r12,8)
incl %r14d
cmpl 0x8(%rbx), %r14d
jb 0x18ca7
addq $0x8, %rsp
popq %rbx
popq %r12
popq %r14
popq %r15
retq
nop
// File: /workspace/github_cpp_makefile_star2_O3/auton1[P]viterbi/bcf_entry.cpp
// Function: bcf_entry::filter_genotypes_by_depth(int, int)
void bcf_entry::filter_genotypes_by_depth(int min_depth, int max_depth)
{
	if (fully_parsed == false)
		parse_full_entry();

	if (DP_idx != -1)
	{	// Have depth info
		int depth;
		for (unsigned int ui=0; ui<N_indv; ui++)
		{
			if (parsed_DP[ui] == false)
				parse_genotype_entry(ui, false, false, true);
			depth = get_indv_DEPTH(ui);
			if ((depth < min_depth) || (depth > max_depth))
				include_genotype[ui] = false;
		}
	}
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
pushq %rax
movl %edx, %ebx
movl %esi, %ebp
movq %rdi, %r14
cmpb $0x0, 0x3d9(%rdi)
jne 0x18d47
movq (%r14), %rax
movq %r14, %rdi
movl $0x1, %esi
callq *0x18(%rax)
cmpl $-0x1, 0x638(%r14)
je 0x18dc8
cmpl $0x0, 0x8(%r14)
je 0x18dc8
xorl %r15d, %r15d
movq 0x5b0(%r14), %rax
movl $0x1, %r12d
movl %r15d, %ecx
shlq %cl, %r12
movl %r15d, %r13d
shrl $0x6, %r13d
movq (%rax,%r13,8), %rax
btq %r15, %rax
jb 0x18d98
movq (%r14), %rax
movq %r14, %rdi
movl %r15d, %esi
xorl %edx, %edx
xorl %ecx, %ecx
movl $0x1, %r8d
xorl %r9d, %r9d
callq *0x20(%rax)
movq %r14, %rdi
movl %r15d, %esi
callq 0x22bdc
cmpl %ebp, %eax
setge %cl
cmpl %ebx, %eax
setle %al
testb %al, %cl
jne 0x18dbf
movq 0x218(%r14), %rax
notq %r12
andq %r12, (%rax,%r13,8)
incl %r15d
cmpl 0x8(%r14), %r15d
jb 0x18d5b
addq $0x8, %rsp
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
retq
nop
// File: /workspace/github_cpp_makefile_star2_O3/auton1[P]viterbi/bcf_entry.cpp
// Function: bcf_entry::filter_genotypes_by_filter_status(std::set<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char>>, std::less<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char>>>, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char>>>> const&, bool)
void bcf_entry::filter_genotypes_by_filter_status(const set<string> &filter_flags_to_remove, bool remove_all)
{
	if (fully_parsed == false)
		parse_full_entry();

	vector<string> GFILTERs;
	if (FT_idx != -1)
	{	// Have GFilter info
		for (unsigned int ui=0; ui<N_indv; ui++)
		{
			if (parsed_FT[ui] == false)
				parse_genotype_entry(ui, false, false, false, true);
			get_indv_GFILTER_vector(ui, GFILTERs);

			if (remove_all == true)
			{	// If removing all filters, only keep things with label PASS
				if (!GFILTERs.empty())
					if ((GFILTERs[0] != "PASS") && (GFILTERs[0] != "."))
						include_genotype[ui] = false;
			}
			else
			{	// Only removing specific filters
				for (unsigned int uj=0; uj<GFILTERs.size(); uj++)
					if (filter_flags_to_remove.find(GFILTERs[uj]) != filter_flags_to_remove.end())
							include_genotype[ui] = false;
			}
		}
	}
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
subq $0x28, %rsp
movl %edx, 0x1c(%rsp)
movq %rsi, 0x20(%rsp)
movq %rdi, %r15
cmpb $0x0, 0x3d9(%rdi)
jne 0x18e09
movq (%r15), %rax
movq %r15, %rdi
movl $0x1, %esi
callq *0x18(%rax)
xorps %xmm0, %xmm0
movaps %xmm0, (%rsp)
movq $0x0, 0x10(%rsp)
cmpl $-0x1, 0x63c(%r15)
je 0x18f2d
cmpl $0x0, 0x8(%r15)
je 0x18f2d
movq 0x20(%rsp), %rax
leaq 0x8(%rax), %rbp
xorl %ebx, %ebx
movq 0x5d8(%r15), %rax
movl $0x1, %r13d
movl %ebx, %ecx
shlq %cl, %r13
movl %ebx, %r12d
shrl $0x6, %r12d
movq (%rax,%r12,8), %rax
btq %rbx, %rax
jb 0x18e78
movq (%r15), %rax
movq %r15, %rdi
movl %ebx, %esi
xorl %edx, %edx
xorl %ecx, %ecx
xorl %r8d, %r8d
movl $0x1, %r9d
callq *0x20(%rax)
movq %r15, %rdi
movl %ebx, %esi
movq %rsp, %rdx
callq 0x22c86
cmpb $0x0, 0x1c(%rsp)
je 0x18ecf
movq (%rsp), %rdi
cmpq 0x8(%rsp), %rdi
je 0x18f21
leaq 0x1f717(%rip), %rsi     # 0x385b9
callq 0x50e0
testl %eax, %eax
je 0x18f21
movq (%rsp), %rdi
leaq 0x20337(%rip), %rsi     # 0x391ed
callq 0x50e0
testl %eax, %eax
je 0x18f21
movq 0x218(%r15), %rax
notq %r13
andq %r13, (%rax,%r12,8)
jmp 0x18f21
movq (%rsp), %rax
cmpq %rax, 0x8(%rsp)
je 0x18f21
notq %r13
movl $0x1, %r14d
xorl %esi, %esi
shlq $0x5, %rsi
addq %rax, %rsi
movq 0x20(%rsp), %rdi
callq 0x1b8cc
cmpq %rbp, %rax
je 0x18f06
movq 0x218(%r15), %rax
andq %r13, (%rax,%r12,8)
movl %r14d, %esi
movq (%rsp), %rax
movq 0x8(%rsp), %rcx
subq %rax, %rcx
sarq $0x5, %rcx
incl %r14d
cmpq %rsi, %rcx
ja 0x18ee5
incl %ebx
cmpl 0x8(%r15), %ebx
jb 0x18e3d
movq %rsp, %rdi
callq 0xc4da
addq $0x28, %rsp
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
retq
jmp 0x18f46
movq %rax, %rbx
movq %rsp, %rdi
callq 0xc4da
movq %rbx, %rdi
callq 0x57d0
nop
// File: /workspace/github_cpp_makefile_star2_O3/auton1[P]viterbi/vcf_entry.cpp
// Function: vcf_entry::parse_basic_entry(bool, bool, bool)
void vcf_entry::parse_basic_entry(bool parse_ALT, bool parse_FILTER, bool parse_INFO)
{
	if(!basic_parsed)
	{
		getline(data_stream, CHROM, '\t');

		getline(data_stream, ID, '\t');
		POS = atoi(ID.c_str());
		getline(data_stream, ID, '\t');
		getline(data_stream, REF, '\t');
		getline(data_stream, ALT_str, '\t');
		getline(data_stream, QUAL_str, '\t');
		getline(data_stream, FILTER_str, '\t');
		getline(data_stream, INFO_str, '\t');

		QUAL = header::str2double(QUAL_str);

		// Convert to uppercase for consistency
		// Note that VCF v4.1 allows mixtures of lower/upper case in REF and ALT.
		// However, the spec specifically states that tools using VCF are not required
		// to preserve the case.
		std::transform(REF.begin(), REF.end(), REF.begin(), ::toupper);
		std::transform(ALT_str.begin(), ALT_str.end(),ALT_str.begin(), ::toupper);
	}
	basic_parsed = true;

	if (parse_ALT && !parsed_ALT)
		set_ALT(ALT_str);
	if (parse_FILTER && !parsed_FILTER)
		set_FILTER(FILTER_str);
	if (parse_INFO && !parsed_INFO)
		set_INFO(INFO_str);
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
pushq %rax
movl %ecx, 0x4(%rsp)
movl %edx, %r14d
movl %esi, %r15d
movq %rdi, %rbx
cmpb $0x0, 0x3d8(%rdi)
jne 0x1c93c
leaq 0x240(%rbx), %r12
leaq 0x3e0(%rbx), %rsi
movq %r12, %rdi
movl $0x9, %edx
callq 0x5830
leaq 0x408(%rbx), %r13
movq %r12, %rdi
movq %r13, %rsi
movl $0x9, %edx
callq 0x5830
movq 0x408(%rbx), %rdi
callq 0x56a0
movl %eax, 0x400(%rbx)
movq %r12, %rdi
movq %r13, %rsi
movl $0x9, %edx
callq 0x5830
leaq 0x428(%rbx), %rsi
movq %r12, %rdi
movl $0x9, %edx
callq 0x5830
leaq 0x6b8(%rbx), %rsi
movq %r12, %rdi
movl $0x9, %edx
callq 0x5830
leaq 0x738(%rbx), %r13
movq %r12, %rdi
movq %r13, %rsi
movl $0x9, %edx
callq 0x5830
leaq 0x6d8(%rbx), %rsi
movq %r12, %rdi
movl $0x9, %edx
callq 0x5830
leaq 0x6f8(%rbx), %rsi
movq %r12, %rdi
movl $0x9, %edx
callq 0x5830
movsd 0x1c76e(%rip), %xmm0    # 0x39040
movq %r13, %rdi
callq 0x1733c
movsd %xmm0, 0x460(%rbx)
movq 0x430(%rbx), %r12
testq %r12, %r12
je 0x1c90f
movq 0x428(%rbx), %r13
xorl %ebp, %ebp
movsbl (%r13,%rbp), %edi
callq 0x5840
movb %al, (%r13,%rbp)
incq %rbp
cmpq %rbp, %r12
jne 0x1c8f7
movq 0x6c0(%rbx), %r12
testq %r12, %r12
je 0x1c93c
movq 0x6b8(%rbx), %r13
xorl %ebp, %ebp
movsbl (%r13,%rbp), %edi
callq 0x5840
movb %al, (%r13,%rbp)
incq %rbp
cmpq %rbp, %r12
jne 0x1c924
movb $0x1, 0x3d8(%rbx)
testb %r15b, %r15b
je 0x1c960
cmpb $0x0, 0x3da(%rbx)
jne 0x1c960
leaq 0x6b8(%rbx), %rsi
movq %rbx, %rdi
callq 0x24690
testb %r14b, %r14b
je 0x1c97d
cmpb $0x0, 0x3db(%rbx)
jne 0x1c97d
leaq 0x6d8(%rbx), %rsi
movq %rbx, %rdi
callq 0x2561c
cmpb $0x0, 0x4(%rsp)
je 0x1c98d
cmpb $0x0, 0x3dc(%rbx)
je 0x1c99c
addq $0x8, %rsp
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
retq
leaq 0x6f8(%rbx), %rsi
movq %rbx, %rdi
addq $0x8, %rsp
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
jmp 0x25770
nop
// File: /workspace/github_cpp_makefile_star2_O3/auton1[P]viterbi/vcf_entry.cpp
// Function: vcf_entry::parse_full_entry(bool)
void vcf_entry::parse_full_entry(bool parse_FORMAT)
{
	if (fully_parsed)
		return;

	if (basic_parsed == false)
		parse_basic_entry();

	getline(data_stream, FORMAT_str, '\t');

	if (parse_FORMAT)
		set_FORMAT(FORMAT_str);

	string tmpstr; tmpstr.reserve(64);
	GENOTYPE_str.resize(N_indv, tmpstr);

	for (unsigned int ui=0; ui<N_indv; ui++)
		getline(data_stream, GENOTYPE_str[ui], '\t');

	fully_parsed = true;
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
subq $0x28, %rsp
cmpb $0x0, 0x3d9(%rdi)
jne 0x1caa1
movl %esi, %ebp
movq %rdi, %rbx
cmpb $0x0, 0x3d8(%rdi)
jne 0x1c9f2
movq (%rbx), %rax
movq %rbx, %rdi
xorl %esi, %esi
xorl %edx, %edx
xorl %ecx, %ecx
callq *0x10(%rax)
leaq 0x240(%rbx), %r14
leaq 0x718(%rbx), %r15
movq %r14, %rdi
movq %r15, %rsi
movl $0x9, %edx
callq 0x5830
testb %bpl, %bpl
je 0x1ca20
movq %rbx, %rdi
movq %r15, %rsi
callq 0x2478a
leaq 0x18(%rsp), %r12
movq %r12, -0x10(%r12)
movq $0x0, -0x8(%r12)
movb $0x0, (%r12)
leaq 0x8(%rsp), %rdi
movl $0x40, %esi
callq 0x56b0
leaq 0x758(%rbx), %r15
movl 0x8(%rbx), %esi
leaq 0x8(%rsp), %rdx
movq %r15, %rdi
callq 0x1ef34
cmpl $0x0, 0x8(%rbx)
je 0x1ca8b
xorl %r13d, %r13d
xorl %ebp, %ebp
movq (%r15), %rsi
addq %r13, %rsi
movq %r14, %rdi
movl $0x9, %edx
callq 0x5830
incq %rbp
movl 0x8(%rbx), %eax
addq $0x20, %r13
cmpq %rax, %rbp
jb 0x1ca69
movb $0x1, 0x3d9(%rbx)
movq 0x8(%rsp), %rdi
cmpq %r12, %rdi
je 0x1caa1
callq 0x5410
addq $0x28, %rsp
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
retq
jmp 0x1cab2
movq %rax, %rbx
movq 0x8(%rsp), %rdi
cmpq %r12, %rdi
je 0x1cac4
callq 0x5410
movq %rbx, %rdi
callq 0x57d0
// File: /workspace/github_cpp_makefile_star2_O3/auton1[P]viterbi/vcf_entry.cpp
// Function: vcf_entry::read_indv_generic_entry(unsigned int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char>> const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char>>&)
void vcf_entry::read_indv_generic_entry(unsigned int indv, const string &FORMAT_id, string &out)
{
	if (fully_parsed == false)
		parse_full_entry(true);

	if (parsed_FORMAT == false)
		set_FORMAT(FORMAT_str);

	out = ".";

	if (FORMAT_to_idx.find(FORMAT_id) != FORMAT_to_idx.end())
	{
		unsigned int idx = FORMAT_to_idx[FORMAT_id];
		static string tmpstr;
		static istringstream ss;
		ss.clear();
		ss.str(GENOTYPE_str[indv]);

		for (unsigned int ui=0; ui <= idx; ui++)
		{
			getline(ss, tmpstr, ':');
			if (ui == idx)
			{
				out = tmpstr;
				break;
			}
			if (!ss.good())
				break;
		}
	}
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r12
pushq %rbx
movq %rcx, %rbx
movq %rdx, %r15
movl %esi, %ebp
movq %rdi, %r14
cmpb $0x0, 0x3d9(%rdi)
jne 0x1edaa
movq (%r14), %rax
movq %r14, %rdi
movl $0x1, %esi
callq *0x18(%rax)
cmpb $0x0, 0x3dd(%r14)
jne 0x1edc3
leaq 0x718(%r14), %rsi
movq %r14, %rdi
callq 0x2478a
movq 0x8(%rbx), %rdx
leaq 0x1a41f(%rip), %rcx     # 0x391ed
movl $0x1, %r8d
movq %rbx, %rdi
xorl %esi, %esi
callq 0x5690
leaq 0x600(%r14), %r12
movq %r12, %rdi
movq %r15, %rsi
callq 0x1f64c
leaq 0x608(%r14), %rcx
cmpq %rcx, %rax
je 0x1eebe
movq %r12, %rdi
movq %r15, %rsi
callq 0x1b32c
movl (%rax), %r12d
movb 0x2ae84(%rip), %al      # 0x49c98
testb %al, %al
je 0x1eec7
movb 0x2affe(%rip), %al      # 0x49e20
testb %al, %al
je 0x1eed1
movq 0x2ae6f(%rip), %rax     # 0x49ca0
leaq 0x2ae68(%rip), %r15     # 0x49ca0
movq -0x18(%rax), %rdi
addq %r15, %rdi
xorl %esi, %esi
callq 0x5750
movl %ebp, %esi
shlq $0x5, %rsi
addq 0x758(%r14), %rsi
leaq 0x2ae56(%rip), %rdi     # 0x49cb0
callq 0x5640
leaq 0x2ae12(%rip), %rsi     # 0x49c78
movq %r15, %rdi
movl $0x3a, %edx
callq 0x5830
testl %r12d, %r12d
je 0x1eea7
leaq 0x2adf9(%rip), %r14     # 0x49c78
movq 0x2ae1a(%rip), %rax     # 0x49ca0
movq -0x18(%rax), %rax
cmpl $0x0, 0x20(%rax,%r15)
jne 0x1eebe
movq %r15, %rdi
movq %r14, %rsi
movl $0x3a, %edx
callq 0x5830
decl %r12d
jne 0x1ee7f
leaq 0x2adca(%rip), %rsi     # 0x49c78
movq %rbx, %rdi
popq %rbx
popq %r12
popq %r14
popq %r15
popq %rbp
jmp 0x51f0
popq %rbx
popq %r12
popq %r14
popq %r15
popq %rbp
retq
callq 0x5b71
jmp 0x1ee1c
leaq 0x2af48(%rip), %rdi     # 0x49e20
callq 0x5810
testl %eax, %eax
je 0x1ee2a
leaq 0x2adb4(%rip), %rdi     # 0x49ca0
callq 0x5310
movq 0x2a0a0(%rip), %rdi     # 0x48f98
leaq 0x2ada1(%rip), %rsi     # 0x49ca0
leaq 0x2a552(%rip), %rdx     # 0x49458
callq 0x53d0
leaq 0x2af0e(%rip), %rdi     # 0x49e20
callq 0x5270
jmp 0x1ee2a
movq %rax, %rbx
leaq 0x2aefa(%rip), %rdi     # 0x49e20
callq 0x5250
movq %rbx, %rdi
callq 0x57d0
nop
// File: /workspace/github_cpp_makefile_star2_O3/auton1[P]viterbi/entry.cpp
// Function: entry::make_typed_string(std::vector<char, std::allocator<char>>&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char>> const&, bool)
void entry::make_typed_string(vector<char> &out, const string &in, bool typed)
{
	vector<char> tmp_vector;
	out.resize(0);

	if (in == "." or in == " " or in == "")
	{
		if (typed == false)
			return;

		int8_t tmp = (int8_t)0;
		tmp = tmp << 4;
		tmp = tmp | (int8_t)7;
		out.push_back( tmp );

		return;
	}

	if (typed == true)
	{
		if (in.length() >= 15)
		{
			int8_t tmp = (int8_t)15;
			tmp = tmp << 4;
			tmp = tmp | (int8_t)7;
			out.push_back( tmp );

			make_typed_int(tmp_vector, in.length(), typed);
			out.insert( out.end(), tmp_vector.begin(), tmp_vector.end() );
		}
		else
		{
			int8_t tmp = (int8_t)in.length();
			tmp = tmp << 4;
			tmp = tmp | (int8_t)7;
			out.push_back( tmp );
		}
	}
	out.reserve(out.size()+in.size());
	copy(in.begin(), in.end(), back_inserter(out));
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %rbx
subq $0x28, %rsp
movl %ecx, %ebp
movq %rdx, %r14
movq %rsi, %rbx
movq %rdi, %r15
xorps %xmm0, %xmm0
movaps %xmm0, 0x10(%rsp)
movq $0x0, 0x20(%rsp)
movq %rsi, %rdi
xorl %esi, %esi
callq 0xf332
leaq 0x19776(%rip), %rsi     # 0x391ed
movq %r14, %rdi
callq 0x50e0
testl %eax, %eax
je 0x1fad4
leaq 0x18685(%rip), %rsi     # 0x3810f
movq %r14, %rdi
callq 0x50e0
testl %eax, %eax
je 0x1fad4
leaq 0x1a43a(%rip), %rsi     # 0x39ed7
movq %r14, %rdi
callq 0x50e0
testl %eax, %eax
je 0x1fad4
testb %bpl, %bpl
je 0x1fb74
movq 0x8(%r14), %rax
cmpq $0xf, %rax
jb 0x1fb0a
movb $-0x9, 0xc(%rsp)
movq 0x8(%rbx), %rsi
cmpq 0x10(%rbx), %rsi
je 0x1fb25
movb $-0x9, (%rsi)
incq 0x8(%rbx)
jmp 0x1fb32
testb %bpl, %bpl
je 0x1fba8
movb $0x7, 0xc(%rsp)
movq 0x8(%rbx), %rsi
cmpq 0x10(%rbx), %rsi
je 0x1faf8
movb $0x7, (%rsi)
incq 0x8(%rbx)
jmp 0x1fba8
leaq 0xc(%rsp), %rdx
movq %rbx, %rdi
callq 0x21896
jmp 0x1fba8
shlb $0x4, %al
orb $0x7, %al
movb %al, 0xc(%rsp)
movq 0x8(%rbx), %rsi
cmpq 0x10(%rbx), %rsi
je 0x1fb67
movb %al, (%rsi)
incq 0x8(%rbx)
jmp 0x1fb74
leaq 0xc(%rsp), %rdx
movq %rbx, %rdi
callq 0x21896
movl 0x8(%r14), %eax
leaq 0xc(%rsp), %rdx
movl %eax, (%rdx)
leaq 0x10(%rsp), %rsi
movq %r15, %rdi
movl $0x1, %ecx
callq 0x1fbd8
movq 0x8(%rbx), %rsi
movq 0x10(%rsp), %rdx
movq 0x18(%rsp), %rcx
movq %rbx, %rdi
callq 0x1bd8c
jmp 0x1fb74
leaq 0xc(%rsp), %rdx
movq %rbx, %rdi
callq 0x21896
movq 0x8(%rbx), %rsi
subq (%rbx), %rsi
addq 0x8(%r14), %rsi
movq %rbx, %rdi
callq 0x2180c
movq (%r14), %rdi
movq 0x8(%r14), %rsi
addq %rdi, %rsi
movq %rbx, %rdx
callq 0x21984
movq 0x10(%rsp), %rdi
testq %rdi, %rdi
je 0x1fba8
callq 0x5410
addq $0x28, %rsp
popq %rbx
popq %r14
popq %r15
popq %rbp
retq
jmp 0x1fbbd
jmp 0x1fbbd
jmp 0x1fbbd
jmp 0x1fbbd
jmp 0x1fbbd
movq %rax, %rbx
movq 0x10(%rsp), %rdi
testq %rdi, %rdi
je 0x1fbcf
callq 0x5410
movq %rbx, %rdi
callq 0x57d0
nop
// File: /workspace/github_cpp_makefile_star2_O3/auton1[P]viterbi/entry.cpp
// Function: entry::make_typed_int(std::vector<char, std::allocator<char>>&, int const&, bool)
void entry::make_typed_int(vector<char> &out, const int &in, bool typed)
{
	vector<char> tmp_char;
	out.resize(0);

	int type;
	int8_t size_type = (int8_t)1;
	if (in < 127 and in >-127)
		type = 1;
	else if (in < 32767 and in>-32767)
		type = 2;
	else
		type = 3;

	make_int(tmp_char, in, type);

	if (typed == true)
	{
		size_type = size_type << 4;
		size_type = size_type | type;
		out.push_back(size_type);
	}
	out.insert(out.end(), tmp_char.begin(), tmp_char.end());
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %rbx
subq $0x28, %rsp
movl %ecx, %ebp
movq %rdx, %r14
movq %rsi, %rbx
xorps %xmm0, %xmm0
movaps %xmm0, 0x10(%rsp)
movq $0x0, 0x20(%rsp)
movq %rsi, %rdi
xorl %esi, %esi
callq 0xf332
movl (%r14), %eax
leal 0x7e(%rax), %ecx
addl $0x7ffe, %eax           # imm = 0x7FFE
cmpl $0xfffd, %eax           # imm = 0xFFFD
movl $0x3, %eax
sbbl $0x0, %eax
cmpl $0xfd, %ecx
movl $0x1, %r15d
cmovael %eax, %r15d
leaq 0x10(%rsp), %rsi
movq %r14, %rdx
movl %r15d, %ecx
callq 0x1fcbc
testb %bpl, %bpl
je 0x1fc6b
orb $0x10, %r15b
movb %r15b, 0xf(%rsp)
movq 0x8(%rbx), %rsi
cmpq 0x10(%rbx), %rsi
je 0x1fc5e
movb %r15b, (%rsi)
incq 0x8(%rbx)
jmp 0x1fc6b
leaq 0xf(%rsp), %rdx
movq %rbx, %rdi
callq 0x21896
movq 0x8(%rbx), %rsi
movq 0x10(%rsp), %rdx
movq 0x18(%rsp), %rcx
movq %rbx, %rdi
callq 0x1bd8c
movq 0x10(%rsp), %rdi
testq %rdi, %rdi
je 0x1fc90
callq 0x5410
addq $0x28, %rsp
popq %rbx
popq %r14
popq %r15
popq %rbp
retq
jmp 0x1fca1
jmp 0x1fca1
jmp 0x1fca1
movq %rax, %rbx
movq 0x10(%rsp), %rdi
testq %rdi, %rdi
je 0x1fcb3
callq 0x5410
movq %rbx, %rdi
callq 0x57d0
nop
// File: /workspace/github_cpp_makefile_star2_O3/auton1[P]viterbi/entry.cpp
// Function: entry::make_int(std::vector<char, std::allocator<char>>&, int const&, int)
void entry::make_int(vector<char> &out, const int &in, int type)
{
	out.resize(0);
	if (type == 1)
	{
		int8_t tmp_int;
		if (in == (int)0x80000000 || in >= 128)
			tmp_int = (int8_t)0x80;
		else if (in == (int)0x80000001)
			tmp_int = (int8_t)0x81;
		else
			tmp_int = (int8_t)in;
		out.push_back( (int8_t)tmp_int);
	}
	else if (type == 2)
	{
		int16_t tmp_int;

		if (in == (int)0x80000000 || in >= 32768)
			tmp_int = 0x8000;
		else if (in == (int)0x80000001)
			tmp_int = (int8_t)0x8001;
		else
			tmp_int = (int16_t)in;

		int8_t split;
		for(unsigned int ui=0; ui<2; ui++)
		{
			split = tmp_int & (int16_t)0x00FF;//0000000011111111
			out.push_back(split);
			tmp_int = tmp_int >> 8;
		}
	}
	else
	{
		int32_t tmp_int;
		tmp_int = (int32_t)in;

		int8_t split;
		for(unsigned int ui=0; ui<4; ui++)
		{
			split = tmp_int & (int32_t)0x0000FF;
			out.push_back( (int8_t)split);
			tmp_int = tmp_int >> 8;
		}
	}
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %rbx
pushq %rax
movl %ecx, %ebp
movq %rdx, %r14
movq %rsi, %rbx
movq %rsi, %rdi
xorl %esi, %esi
callq 0xf332
movl (%r14), %r15d
cmpl $0x2, %ebp
je 0x1fd24
cmpl $0x1, %ebp
jne 0x1fd85
leal -0x80(%r15), %eax
cmpl $0x80000001, %r15d      # imm = 0x80000001
movl $0x81, %ecx
cmovnel %r15d, %ecx
cmpl $0x7fffff81, %eax       # imm = 0x7FFFFF81
movl $0x80, %eax
cmovael %ecx, %eax
movb %al, 0x7(%rsp)
movq 0x8(%rbx), %rsi
cmpq 0x10(%rbx), %rsi
je 0x1fdbc
movb %al, (%rsi)
incq 0x8(%rbx)
jmp 0x1fdc9
movl $0xffff8000, %eax       # imm = 0xFFFF8000
leal (%r15,%rax), %ecx
cmpl $0x80000001, %r15d      # imm = 0x80000001
movl $0x1, %ebp
cmovnel %r15d, %ebp
cmpl $0x7fff8001, %ecx       # imm = 0x7FFF8001
cmovbl %eax, %ebp
movb $0x1, %r15b
leaq 0x6(%rsp), %r14
movb %bpl, 0x6(%rsp)
movq 0x8(%rbx), %rsi
cmpq 0x10(%rbx), %rsi
je 0x1fd66
movb %bpl, (%rsi)
incq 0x8(%rbx)
jmp 0x1fd71
movq %rbx, %rdi
movq %r14, %rdx
callq 0x21896
shll $0x10, %ebp
sarl $0x18, %ebp
testb $0x1, %r15b
movl $0x0, %r15d
jne 0x1fd4e
jmp 0x1fdc9
movl $0x4, %ebp
leaq 0x5(%rsp), %r14
movb %r15b, 0x5(%rsp)
movq 0x8(%rbx), %rsi
cmpq 0x10(%rbx), %rsi
je 0x1fda7
movb %r15b, (%rsi)
incq 0x8(%rbx)
jmp 0x1fdb2
movq %rbx, %rdi
movq %r14, %rdx
callq 0x21896
sarl $0x8, %r15d
decl %ebp
jne 0x1fd8f
jmp 0x1fdc9
leaq 0x7(%rsp), %rdx
movq %rbx, %rdi
callq 0x21896
addq $0x8, %rsp
popq %rbx
popq %r14
popq %r15
popq %rbp
retq
// File: /workspace/github_cpp_makefile_star2_O3/auton1[P]viterbi/entry.cpp
// Function: entry::encode_genotype(std::vector<char, std::allocator<char>>&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char>>&, int)
void entry::encode_genotype(vector<char> &out, string &in, int exp_size)
{
	int8_t tmp_int;
	int8_t phased = 0;
	out.resize(0);

	for (unsigned int ui=0; ui<in.length(); ui++)
	{
		if (in[ui] =='|')
			phased = 1;
		else if (in[ui] == '/')
			phased = 0;
		else
		{
			if(in[ui] != '.')
			{
				tmp_int = header::str2int( in.substr(ui,1) );
				tmp_int++;
				tmp_int = tmp_int << 1;
				tmp_int = tmp_int | phased;
			}
			else
				tmp_int = 0x80;

			out.push_back( (int8_t)tmp_int );
		}
	}
	int pad = out.size();
	while (pad<exp_size)
	{
		out.push_back( (int8_t)0x81 );
		pad+=1;
	}
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
subq $0x28, %rsp
movl %ecx, %ebx
movq %rdx, %r15
movq %rsi, %r14
movq %rsi, %rdi
xorl %esi, %esi
callq 0xf332
movq 0x8(%r15), %rax
testq %rax, %rax
je 0x2029c
movl $0x1, %r13d
xorl %edx, %edx
xorl %r12d, %r12d
movq (%r15), %rcx
movzbl (%rcx,%rdx), %esi
cmpl $0x2e, %esi
je 0x2025b
cmpl $0x2f, %esi
je 0x20257
movb $0x1, %cl
cmpl $0x7c, %esi
je 0x2028a
movl $0x1, %ecx
leaq 0x8(%rsp), %rbp
movq %rbp, %rdi
movq %r15, %rsi
callq 0x5480
movq %rbp, %rdi
movl $0xffffffff, %esi       # imm = 0xFFFFFFFF
callq 0x16afa
movl %eax, %ebp
movq 0x8(%rsp), %rdi
leaq 0x18(%rsp), %rax
cmpq %rax, %rdi
je 0x20246
callq 0x5410
shll $0x19, %ebp
addl $0x2000000, %ebp        # imm = 0x2000000
shrl $0x18, %ebp
orb %r12b, %bpl
jmp 0x2025e
xorl %ecx, %ecx
jmp 0x2028a
movb $-0x80, %bpl
movb %bpl, 0x8(%rsp)
movq 0x8(%r14), %rsi
cmpq 0x10(%r14), %rsi
je 0x20276
movb %bpl, (%rsi)
incq 0x8(%r14)
jmp 0x20283
movq %r14, %rdi
leaq 0x8(%rsp), %rdx
callq 0x21896
movq 0x8(%r15), %rax
movl %r12d, %ecx
movl %r13d, %edx
incl %r13d
movl %ecx, %r12d
cmpq %rdx, %rax
ja 0x201f6
movq (%r14), %rcx
movq 0x8(%r14), %rax
movl %eax, %edx
subl %ecx, %edx
cmpl %ebx, %edx
jge 0x202db
addl %ecx, %ebx
subl %eax, %ebx
leaq 0x8(%rsp), %r15
movb $-0x7f, 0x8(%rsp)
movq 0x8(%r14), %rsi
cmpq 0x10(%r14), %rsi
je 0x202cc
movb $-0x7f, (%rsi)
incq 0x8(%r14)
jmp 0x202d7
movq %r14, %rdi
movq %r15, %rdx
callq 0x21896
decl %ebx
jne 0x202b4
addq $0x28, %rsp
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
retq
movq %rax, %rbx
movq 0x8(%rsp), %rdi
leaq 0x18(%rsp), %rax
cmpq %rax, %rdi
je 0x20301
callq 0x5410
movq %rbx, %rdi
callq 0x57d0
nop
// File: /workspace/github_cpp_makefile_star2_O3/auton1[P]viterbi/entry.cpp
// Function: entry::make_type_size(std::vector<char, std::allocator<char>>&, unsigned int const&, unsigned int const&)
void entry::make_type_size(vector<char> &out, const unsigned int &type, const unsigned int &size)
{
	uint8_t byte;
	vector<char> tmp_vector;
	tmp_vector.resize(0);
	out.resize(0);

	if (size < 15)
	{
		byte = size;
		byte = byte << 4;
	}
	else
	{
		byte = (uint8_t)15;
		make_typed_int(tmp_vector, size, true);
	}

	byte = byte | (uint8_t)type;
	out.push_back(byte);
	out.insert(out.end(), tmp_vector.begin(), tmp_vector.end());
}

// Assembly:
pushq %r15
pushq %r14
pushq %r12
pushq %rbx
subq $0x28, %rsp
movq %rcx, %r12
movq %rdx, %r14
movq %rsi, %rbx
movq %rdi, %r15
xorps %xmm0, %xmm0
leaq 0x10(%rsp), %rdi
movaps %xmm0, (%rdi)
movq $0x0, 0x10(%rdi)
xorl %esi, %esi
callq 0xf332
movq %rbx, %rdi
xorl %esi, %esi
callq 0xf332
movl (%r12), %eax
cmpl $0xe, %eax
ja 0x21087
shll $0x4, %eax
jmp 0x210a5
leaq 0xc(%rsp), %rdx
movl %eax, (%rdx)
leaq 0x10(%rsp), %rsi
movq %r15, %rdi
movl $0x1, %ecx
callq 0x1fbd8
movl $0xf, %eax
orl (%r14), %eax
movb %al, 0xc(%rsp)
movq 0x8(%rbx), %rsi
cmpq 0x10(%rbx), %rsi
je 0x210c5
movb %al, (%rsi)
movq 0x8(%rbx), %rsi
incq %rsi
movq %rsi, 0x8(%rbx)
jmp 0x210d6
leaq 0xc(%rsp), %rdx
movq %rbx, %rdi
callq 0x21896
movq 0x8(%rbx), %rsi
movq 0x10(%rsp), %rdx
movq 0x18(%rsp), %rcx
movq %rbx, %rdi
callq 0x1bd8c
movq 0x10(%rsp), %rdi
testq %rdi, %rdi
je 0x210f7
callq 0x5410
addq $0x28, %rsp
popq %rbx
popq %r12
popq %r14
popq %r15
retq
jmp 0x21109
jmp 0x21109
jmp 0x21109
movq %rax, %rbx
movq 0x10(%rsp), %rdi
testq %rdi, %rdi
je 0x2111b
callq 0x5410
movq %rbx, %rdi
callq 0x57d0
nop
// File: /workspace/github_cpp_makefile_star2_O3/auton1[P]viterbi/entry.cpp
// Function: entry::get_type(unsigned int*, std::vector<char, std::allocator<char>> const&, unsigned int&, unsigned int&)
void entry::get_type(unsigned int * line_position, const vector<char>& line, unsigned int &type, unsigned int &size)
{
	uint8_t byte = *reinterpret_cast<const uint8_t*>(&line[*line_position]);
	*line_position += sizeof(byte);
	size = byte >> 4;
	type = (byte & (uint8_t)15);

	if (size == 15)
	{
		int type2;
		byte = *reinterpret_cast<const uint8_t*>(&line[*line_position]);
		*line_position += sizeof(byte);

		type2 = (byte & (uint8_t)15);
		if (type2 == 1)
		{
			int8_t tmp;
			tmp = *reinterpret_cast<const int8_t*>(&line[*line_position]);
			*line_position += sizeof(tmp);
			size = (unsigned int)tmp;
		}
		else if (type2 == 2)
		{
			int16_t tmp;
			tmp = *reinterpret_cast<const int16_t*>(&line[*line_position]);
			*line_position += sizeof(tmp);

			size = (int)tmp;
		}
		else if (type2 == 3)
		{
			int32_t tmp;
			tmp = *reinterpret_cast<const int32_t*>(&line[*line_position]);
			*line_position += sizeof(tmp);
			size = (unsigned int)tmp;
		}
		else
		{
			LOG.printLOG("Error: Invalid type for integer size.\n");
			exit(0);
		}
	}
}

// Assembly:
pushq %r14
pushq %rbx
subq $0x28, %rsp
movl (%rsi), %edi
movq (%rdx), %rax
movzbl (%rax,%rdi), %edx
incl %edi
movl %edi, (%rsi)
movl %edx, %edi
shrl $0x4, %edi
movl %edi, (%r8)
andl $0xf, %edx
movl %edx, (%rcx)
cmpl $0xf, (%r8)
jne 0x213fd
movl (%rsi), %ecx
movzbl (%rax,%rcx), %edi
leal 0x1(%rcx), %edx
movl %edx, (%rsi)
andl $0xf, %edi
cmpl $0x3, %edi
je 0x213f0
cmpl $0x2, %edi
je 0x213e5
cmpl $0x1, %edi
jne 0x21405
movl %edx, %edx
movsbl (%rax,%rdx), %eax
addl $0x2, %ecx
jmp 0x213f8
movl %edx, %edx
movswl (%rax,%rdx), %eax
addl $0x3, %ecx
jmp 0x213f8
movl %edx, %edx
movl (%rax,%rdx), %eax
addl $0x5, %ecx
movl %ecx, (%rsi)
movl %eax, (%r8)
addq $0x28, %rsp
popq %rbx
popq %r14
retq
leaq 0x18(%rsp), %r14
movq %r14, -0x10(%r14)
leaq 0x17fbd(%rip), %rsi     # 0x393d2
leaq 0x17fdc(%rip), %rdx     # 0x393f8
leaq 0x8(%rsp), %rbx
movq %rbx, %rdi
callq 0xc85e
leaq 0x28078(%rip), %rdi     # 0x494a8
movq %rbx, %rsi
callq 0x36e72
leaq 0x8(%rsp), %rdi
callq 0x58b0
xorl %edi, %edi
callq 0x5540
movq %rax, %rbx
movq 0x8(%rsp), %rdi
cmpq %r14, %rdi
je 0x2145b
callq 0x5410
movq %rbx, %rdi
callq 0x57d0
nop
// File: /workspace/github_cpp_makefile_star2_O3/auton1[P]viterbi/entry.cpp
// Function: entry::get_typed_int(unsigned int*, std::vector<char, std::allocator<char>> const&, unsigned int&, unsigned int&)
int entry::get_typed_int(unsigned int * line_position, const vector<char>& line, unsigned int &type, unsigned int &size)
{
	int out;

	get_type( line_position, line, type, size );

	if (size > 1)
	{
		LOG.printLOG("Error: Int vector when expected only a single Integer value.\n" );
		exit(0);
	}

	if (type == 1)
	{
		int8_t tmp;
		tmp = *reinterpret_cast<const int8_t*>(&line[*line_position]);
		*line_position += sizeof(tmp);
		out = tmp;
	}
	else if (type == 2)
	{
		int16_t tmp;
		tmp = *reinterpret_cast<const int16_t*>(&line[*line_position]);
		*line_position += sizeof(tmp);
		out = tmp;
	}
	else if (type == 3)
	{
		int32_t tmp;
		tmp = *reinterpret_cast<const int32_t*>(&line[*line_position]);
		*line_position += sizeof(tmp);
		out = tmp;
	}
	else
	{
		LOG.printLOG("Error: Invalid type for integer size.\n");
		exit(0);
	}
	return out;
}

// Assembly:
pushq %r15
pushq %r14
pushq %r12
pushq %rbx
subq $0x48, %rsp
movq %r8, %r12
movq %rcx, %r15
movq %rdx, %r14
movq %rsi, %rbx
callq 0x21396
cmpl $0x2, (%r12)
jae 0x214cd
movl (%r15), %eax
cmpl $0x3, %eax
je 0x214b4
cmpl $0x2, %eax
je 0x214a6
cmpl $0x1, %eax
jne 0x21507
movl (%rbx), %ecx
movq (%r14), %rax
movsbl (%rax,%rcx), %eax
incl %ecx
jmp 0x214bf
movl (%rbx), %ecx
movq (%r14), %rax
movswl (%rax,%rcx), %eax
addl $0x2, %ecx
jmp 0x214bf
movl (%rbx), %ecx
movq (%r14), %rax
movl (%rax,%rcx), %eax
addl $0x4, %ecx
movl %ecx, (%rbx)
addq $0x48, %rsp
popq %rbx
popq %r12
popq %r14
popq %r15
retq
leaq 0x38(%rsp), %r14
movq %r14, -0x10(%r14)
leaq 0x17eb7(%rip), %rsi     # 0x39394
leaq 0x17eed(%rip), %rdx     # 0x393d1
leaq 0x28(%rsp), %rbx
movq %rbx, %rdi
callq 0xc85e
leaq 0x27fb0(%rip), %rdi     # 0x494a8
movq %rbx, %rsi
callq 0x36e72
leaq 0x28(%rsp), %rdi
jmp 0x2153f
leaq 0x18(%rsp), %r14
movq %r14, -0x10(%r14)
leaq 0x17ebb(%rip), %rsi     # 0x393d2
leaq 0x17eda(%rip), %rdx     # 0x393f8
leaq 0x8(%rsp), %rbx
movq %rbx, %rdi
callq 0xc85e
leaq 0x27f76(%rip), %rdi     # 0x494a8
movq %rbx, %rsi
callq 0x36e72
leaq 0x8(%rsp), %rdi
callq 0x58b0
xorl %edi, %edi
callq 0x5540
movq %rax, %rbx
movq 0x8(%rsp), %rdi
jmp 0x2155d
movq %rax, %rbx
movq 0x28(%rsp), %rdi
cmpq %r14, %rdi
je 0x21567
callq 0x5410
movq %rbx, %rdi
callq 0x57d0
nop
// File: /workspace/github_cpp_makefile_star2_O3/auton1[P]viterbi/entry.cpp
// Function: entry::get_int_vector(unsigned int*, std::vector<char, std::allocator<char>> const&)
vector<int> entry::get_int_vector(unsigned int * line_position, const vector<char>& line)
{
	unsigned int size, type;
	get_type( line_position, line, type, size );
	vector<int> out(size);
	if (type == 1)
	{
		int8_t tmp;
		for (unsigned int ui=0; ui<size; ui++)
		{
			tmp = *reinterpret_cast<const int8_t*>(&line[*line_position]);
			*line_position += sizeof(tmp);
			out[ui] = tmp;
		}
	}
	else if (type == 2)
	{
		int16_t tmp;
		for (unsigned int ui=0; ui<size; ui++)
		{
			tmp = *reinterpret_cast<const int16_t*>(&line[*line_position]);
			*line_position += sizeof(tmp);
			out[ui] = tmp;
		}
	}
	else if (type == 3)
	{
		int32_t tmp;
		for (unsigned int ui=0; ui<size; ui++)
		{
			tmp = *reinterpret_cast<const int32_t*>(&line[*line_position]);
			*line_position += sizeof(tmp);
			out[ui] = tmp;
		}
	}
	else
	{
		LOG.printLOG("Error: Invalid type for integer size.\n");
		exit(0);
	}
	return out;
}

// Assembly:
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
subq $0x30, %rsp
movq %rcx, %r12
movq %rdx, %r14
movq %rdi, %rbx
leaq 0x8(%rsp), %r13
leaq 0xc(%rsp), %r15
movq %rdx, %rsi
movq %rcx, %rdx
movq %r13, %rcx
movq %r15, %r8
callq 0x21396
movl (%r15), %r15d
leaq 0x7(%rsp), %rdx
movq %rbx, %rdi
movq %r15, %rsi
callq 0xba38
movl (%r13), %eax
cmpl $0x1, %eax
je 0x2161a
cmpl $0x2, %eax
je 0x215f2
cmpl $0x3, %eax
jne 0x21650
testq %r15, %r15
je 0x2163f
movq (%r12), %rax
movq (%rbx), %rcx
xorl %edx, %edx
movl (%r14), %esi
movl (%rax,%rsi), %edi
addl $0x4, %esi
movl %esi, (%r14)
movl %edi, (%rcx,%rdx,4)
incq %rdx
cmpq %rdx, %r15
jne 0x215d9
jmp 0x2163f
testq %r15, %r15
je 0x2163f
movq (%r12), %rax
movq (%rbx), %rcx
xorl %edx, %edx
movl (%r14), %esi
movswl (%rax,%rsi), %edi
addl $0x2, %esi
movl %esi, (%r14)
movl %edi, (%rcx,%rdx,4)
incq %rdx
cmpq %rdx, %r15
jne 0x21600
jmp 0x2163f
testq %r15, %r15
je 0x2163f
movq (%r12), %rax
movq (%rbx), %rcx
xorl %edx, %edx
movl (%r14), %esi
movsbl (%rax,%rsi), %edi
incl %esi
movl %esi, (%r14)
movl %edi, (%rcx,%rdx,4)
incq %rdx
cmpq %rdx, %r15
jne 0x21628
movq %rbx, %rax
addq $0x30, %rsp
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
retq
leaq 0x20(%rsp), %r15
movq %r15, -0x10(%r15)
leaq 0x17d72(%rip), %rsi     # 0x393d2
leaq 0x17d91(%rip), %rdx     # 0x393f8
leaq 0x10(%rsp), %rdi
callq 0xc85e
leaq 0x27e30(%rip), %rdi     # 0x494a8
leaq 0x10(%rsp), %rsi
callq 0x36e72
leaq 0x10(%rsp), %rdi
callq 0x58b0
xorl %edi, %edi
callq 0x5540
movq %rax, %r14
movq 0x10(%rsp), %rdi
cmpq %r15, %rdi
je 0x216aa
callq 0x5410
jmp 0x216aa
movq %rax, %r14
movq (%rbx), %rdi
testq %rdi, %rdi
je 0x216b7
callq 0x5410
movq %r14, %rdi
callq 0x57d0
nop
// File: /workspace/github_cpp_makefile_star2_O3/auton1[P]viterbi/entry.cpp
// Function: entry::skip_section(unsigned int*, std::vector<char, std::allocator<char>> const&)
void entry::skip_section(unsigned int *line_position, const vector<char> &line)
{
	unsigned int type, size;
	get_type(line_position, line, type, size);

	if ( (type == 1) || (type == 7) )
		*line_position += sizeof(int8_t)*size;
	else if (type == 2)
		*line_position += sizeof(int16_t)*size;
	else if ( (type == 3) || (type == 5) )
		*line_position += sizeof(int32_t)*size;
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
movq %rsi, %rbx
leaq 0x4(%rsp), %r14
movq %rsp, %r8
movq %r14, %rcx
callq 0x21396
movl (%r14), %eax
decl %eax
cmpl $0x6, %eax
ja 0x21709
leaq 0x17bcc(%rip), %rcx     # 0x392b4
movslq (%rcx,%rax,4), %rax
addq %rcx, %rax
jmpq *%rax
movl (%rbx), %eax
addl (%rsp), %eax
jmp 0x21707
movl (%rsp), %eax
shll $0x2, %eax
jmp 0x21705
movl (%rsp), %eax
addl %eax, %eax
addl (%rbx), %eax
movl %eax, (%rbx)
addq $0x8, %rsp
popq %rbx
popq %r14
retq
nop
// File: /workspace/github_cpp_makefile_star2_O3/auton1[P]viterbi/entry_getters.cpp
// Function: entry::get_REF[abi:cxx11]() const
string entry::get_REF() const
{
	if (REF == "")
		return ".";
	else
		return REF;
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
movq %rsi, %r14
movq %rdi, %rbx
leaq 0x428(%rsi), %rdi
leaq 0x18371(%rip), %rsi     # 0x39ed7
callq 0x50e0
leaq 0x10(%rbx), %rcx
movq %rcx, (%rbx)
testl %eax, %eax
je 0x21b91
movq 0x428(%r14), %rsi
movq 0x430(%r14), %rdx
addq %rsi, %rdx
movq %rbx, %rdi
callq 0xc7c8
jmp 0x21ba7
leaq 0x17655(%rip), %rsi     # 0x391ed
leaq 0x1764f(%rip), %rdx     # 0x391ee
movq %rbx, %rdi
callq 0xc85e
movq %rbx, %rax
addq $0x8, %rsp
popq %rbx
popq %r14
retq
// File: /workspace/github_cpp_makefile_star2_O3/auton1[P]viterbi/entry_getters.cpp
// Function: entry::get_ALT[abi:cxx11]() const
string entry::get_ALT() const
{
	assert(parsed_ALT == true);

	string out;
	if (ALT.empty())
		out = ".";
	else if (ALT.size() == 1 && ALT[0] == "")
		out = ".";
	else
	{
		out = ALT[0];
		for (unsigned int ui=1; ui<ALT.size(); ui++)
			out += "," + ALT[ui];
	}
	return out;
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
subq $0x28, %rsp
cmpb $0x0, 0x3da(%rsi)
je 0x21cf0
movq %rsi, %r14
movq %rdi, %rbx
leaq 0x10(%rdi), %r15
movq %r15, (%rdi)
movq $0x0, 0x8(%rdi)
movb $0x0, 0x10(%rdi)
movq 0x448(%rsi), %rsi
movq 0x450(%r14), %rax
cmpq %rax, %rsi
movq %r15, (%rsp)
je 0x21cbf
subq %rsi, %rax
cmpq $0x20, %rax
jne 0x21c2b
leaq 0x182c6(%rip), %rax     # 0x39ed7
movq %rsi, %rdi
movq %rax, %rsi
callq 0x50e0
testl %eax, %eax
je 0x21cc3
movq 0x448(%r14), %rsi
movq %rbx, %rdi
callq 0x51f0
movq 0x448(%r14), %rax
movq 0x450(%r14), %rcx
subq %rax, %rcx
cmpq $0x21, %rcx
jb 0x21cde
movl $0x1, %edx
movl $0x2, %r13d
leaq 0x18(%rsp), %rbp
leaq 0x17027(%rip), %r15     # 0x38c8c
leaq 0x8(%rsp), %r12
shlq $0x5, %rdx
addq %rax, %rdx
movq %r12, %rdi
movq %r15, %rsi
callq 0xb777
movq 0x8(%rsp), %rsi
movq 0x10(%rsp), %rdx
movq %rbx, %rdi
callq 0x50f0
movq 0x8(%rsp), %rdi
cmpq %rbp, %rdi
je 0x21c9d
callq 0x5410
movl %r13d, %edx
movq 0x448(%r14), %rax
movq 0x450(%r14), %rcx
subq %rax, %rcx
sarq $0x5, %rcx
incl %r13d
cmpq %rdx, %rcx
ja 0x21c6a
jmp 0x21cde
xorl %edx, %edx
jmp 0x21cc7
movq 0x8(%rbx), %rdx
leaq 0x1751f(%rip), %rcx     # 0x391ed
movl $0x1, %r8d
movq %rbx, %rdi
xorl %esi, %esi
callq 0x5690
movq %rbx, %rax
addq $0x28, %rsp
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
retq
leaq 0x17702(%rip), %rdi     # 0x393f9
leaq 0x1770e(%rip), %rsi     # 0x3940c
leaq 0x17719(%rip), %rcx     # 0x3941e
movl $0x2d, %edx
callq 0x5280
jmp 0x21d11
movq %rax, %r14
jmp 0x21d28
movq %rax, %r14
movq 0x8(%rsp), %rdi
cmpq %rbp, %rdi
je 0x21d28
callq 0x5410
movq (%rbx), %rdi
cmpq (%rsp), %rdi
je 0x21d36
callq 0x5410
movq %r14, %rdi
callq 0x57d0
// File: /workspace/github_cpp_makefile_star2_O3/auton1[P]viterbi/entry_getters.cpp
// Function: entry::is_SNP() const
bool entry::is_SNP() const
{
	assert(parsed_ALT == true);

	if (REF.size() != 1)
		return false;	// Reference isn't a single base

	if (ALT.empty())
		return false;	// No alternative allele

	for (unsigned int ui=0; ui<ALT.size(); ui++)
		if (ALT[ui].size() != 1)
			return false;	// Alternative allele isn't a single base

	return true;
}

// Assembly:
pushq %rax
cmpb $0x0, 0x3da(%rdi)
je 0x21d91
cmpq $0x1, 0x430(%rdi)
jne 0x21d8d
movq 0x448(%rdi), %rcx
movq 0x450(%rdi), %rdx
cmpq %rdx, %rcx
je 0x21d8d
subq %rcx, %rdx
sarq $0x5, %rdx
movl $0x1, %esi
xorl %edi, %edi
shlq $0x5, %rdi
cmpq $0x1, 0x8(%rcx,%rdi)
sete %al
jne 0x21d8f
movl %esi, %edi
incl %esi
cmpq %rdi, %rdx
ja 0x21d73
jmp 0x21d8f
xorl %eax, %eax
popq %rcx
retq
leaq 0x17661(%rip), %rdi     # 0x393f9
leaq 0x1766d(%rip), %rsi     # 0x3940c
leaq 0x17696(%rip), %rcx     # 0x3943c
movl $0x3f, %edx
callq 0x5280
// File: /workspace/github_cpp_makefile_star2_O3/auton1[P]viterbi/entry_getters.cpp
// Function: entry::is_biallelic_SNP() const
bool entry::is_biallelic_SNP() const
{
	assert(parsed_ALT == true);

	if (REF.size() != 1)
		return false;	// Reference isn't a single base

	if (ALT.size() != 1)
		return false;	// Not biallelic

	if (ALT[0].size() != 1)
		return false;	// Alternative allele isn't a single base

	return true;
}

// Assembly:
cmpb $0x0, 0x3da(%rdi)
je 0x21de6
cmpq $0x1, 0x430(%rdi)
jne 0x21de3
movq 0x448(%rdi), %rax
movq 0x450(%rdi), %rcx
subq %rax, %rcx
cmpq $0x20, %rcx
jne 0x21de3
cmpq $0x1, 0x8(%rax)
sete %al
retq
xorl %eax, %eax
retq
pushq %rax
leaq 0x1760b(%rip), %rdi     # 0x393f9
leaq 0x17617(%rip), %rsi     # 0x3940c
leaq 0x1765b(%rip), %rcx     # 0x39457
movl $0x50, %edx
callq 0x5280
// File: /workspace/github_cpp_makefile_star2_O3/auton1[P]viterbi/entry_getters.cpp
// Function: entry::is_diploid() const
bool entry::is_diploid() const
{
	for (unsigned int ui=0; ui<N_indv; ui++)
	{
		if ((include_indv[ui] == true) && (include_genotype[ui] == true))
		{
			assert(parsed_GT[ui] == true);
			if (ploidy[ui] != 2)
				return false;
		}
	}
	return true;
}

// Assembly:
pushq %rbx
movl 0x8(%rdi), %edx
testq %rdx, %rdx
je 0x21e68
movq 0x1f0(%rdi), %rsi
movq 0x218(%rdi), %r8
movq 0x560(%rdi), %r9
movq 0x4e8(%rdi), %rdi
xorl %ecx, %ecx
xorl %eax, %eax
movl $0x1, %r10d
shlq %cl, %r10
movl %ecx, %r11d
shrl $0x6, %r11d
movq (%rsi,%r11,8), %rbx
btq %rcx, %rbx
jae 0x21e5b
testq %r10, (%r8,%r11,8)
je 0x21e5b
testq %r10, (%r9,%r11,8)
je 0x21e6e
cmpl $0x2, (%rdi,%rcx,4)
jne 0x21e6a
incq %rcx
cmpq %rdx, %rcx
setae %al
jne 0x21e2f
jmp 0x21e6a
movb $0x1, %al
andb $0x1, %al
popq %rbx
retq
leaq 0x17607(%rip), %rdi     # 0x3947c
leaq 0x17590(%rip), %rsi     # 0x3940c
leaq 0x1760f(%rip), %rcx     # 0x39492
movl $0x64, %edx
callq 0x5280
nop
// File: /workspace/github_cpp_makefile_star2_O3/auton1[P]viterbi/entry_getters.cpp
// Function: entry::get_allele(int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char>>&) const
void entry::get_allele(int allele_num, string &out) const
{
	assert(parsed_ALT == true);

	if (allele_num == -2)
		out = "";
	else if (allele_num == 0)
		out = REF;
	else if ((allele_num == -1) || (unsigned(allele_num - 1) >=  ALT.size()))
		out = ".";
	else
		out = ALT[allele_num-1];
}

// Assembly:
cmpb $0x0, 0x3da(%rdi)
je 0x21f27
movq %rdi, %rax
testl %esi, %esi
je 0x21ec7
cmpl $-0x1, %esi
je 0x21f09
cmpl $-0x2, %esi
jne 0x21ed8
movq 0x8(%rdx), %rax
leaq 0x18020(%rip), %rcx     # 0x39ed7
movq %rdx, %rdi
xorl %esi, %esi
movq %rax, %rdx
xorl %r8d, %r8d
jmp 0x5690
addq $0x428, %rax            # imm = 0x428
movq %rdx, %rdi
movq %rax, %rsi
jmp 0x51f0
decl %esi
movq 0x448(%rax), %rcx
movq 0x450(%rax), %rax
subq %rcx, %rax
sarq $0x5, %rax
cmpq %rsi, %rax
jbe 0x21f09
movslq %esi, %rax
shlq $0x5, %rax
addq %rax, %rcx
movq %rdx, %rdi
movq %rcx, %rsi
jmp 0x51f0
movq 0x8(%rdx), %rax
leaq 0x172d9(%rip), %rcx     # 0x391ed
movl $0x1, %r8d
movq %rdx, %rdi
xorl %esi, %esi
movq %rax, %rdx
jmp 0x5690
pushq %rax
leaq 0x174ca(%rip), %rdi     # 0x393f9
leaq 0x174d6(%rip), %rsi     # 0x3940c
leaq 0x17574(%rip), %rcx     # 0x394b1
movl $0x6e, %edx
callq 0x5280
nop
// File: /workspace/github_cpp_makefile_star2_O3/auton1[P]viterbi/entry_getters.cpp
// Function: entry::get_allele[abi:cxx11](int) const
string entry::get_allele(int allele_num) const
{
	assert(parsed_ALT == true);

	if (allele_num == -2)
		return "";
	else if (allele_num == 0)
		return REF;
	else if ((allele_num < 0) || (unsigned(allele_num - 1) >=  ALT.size()))
		return ".";
	else
		return ALT[allele_num-1];
}

// Assembly:
pushq %rbx
cmpb $0x0, 0x3da(%rsi)
je 0x21ffb
movq %rdi, %rbx
testl %edx, %edx
je 0x21f78
cmpl $-0x2, %edx
jne 0x21f98
leaq 0x10(%rbx), %rax
movq %rax, (%rbx)
leaq 0x17f67(%rip), %rdx     # 0x39ed7
movq %rbx, %rdi
movq %rdx, %rsi
jmp 0x21ff1
leaq 0x10(%rbx), %rax
movq %rax, (%rbx)
movq 0x428(%rsi), %rax
movq 0x430(%rsi), %rdx
addq %rax, %rdx
movq %rbx, %rdi
movq %rax, %rsi
jmp 0x21fd2
testl %edx, %edx
js 0x21fd9
decl %edx
movq 0x448(%rsi), %rax
movq 0x450(%rsi), %rcx
subq %rax, %rcx
sarq $0x5, %rcx
cmpq %rdx, %rcx
jbe 0x21fd9
shlq $0x5, %rdx
leaq 0x10(%rbx), %rcx
movq %rcx, (%rbx)
movq (%rax,%rdx), %rsi
movq 0x8(%rax,%rdx), %rdx
addq %rsi, %rdx
movq %rbx, %rdi
callq 0xc7c8
jmp 0x21ff6
leaq 0x10(%rbx), %rax
movq %rax, (%rbx)
leaq 0x17206(%rip), %rsi     # 0x391ed
leaq 0x17200(%rip), %rdx     # 0x391ee
movq %rbx, %rdi
callq 0xc85e
movq %rbx, %rax
popq %rbx
retq
leaq 0x173f7(%rip), %rdi     # 0x393f9
leaq 0x17403(%rip), %rsi     # 0x3940c
leaq 0x174cd(%rip), %rcx     # 0x394dd
movl $0x7c, %edx
callq 0x5280