// File: ridgelab[P]Kmer-SSR/src/Arguments.cpp
// Function: Arguments::Arguments(int, char**)
Arguments::Arguments(int argc, char* argv[])
{
	this->input_file_name = "/dev/stdin";
	this->output_file_name = "/dev/stdout";

	this->allow_non_atomic = false;
	this->display_progress_bar = true;
	this->exhaustive = false;

	this->bzipped2_input = false;
	this->bzipped2_output = false;
	this->gzipped_input = false;
	this->gzipped_output = false;

	this->threads = 1;

	this->help_displayed = false;
	this->version_displayed = false;

	this->usage_message = USAGE_MESSAGE; // defined in usage.h
	this->help_message = HELP_MESSAGE;   // defined in help.h
	this->version = VERSION;             // defined in version.h

	this->alphabet = new unordered_set<char>();
	this->periods = new set<uint32_t, bool(*)(uint32_t,uint32_t)>(reverseOrderPointer);
	this->enumerated_ssrs = new unordered_set<string>();

	this->processArgs(argc, argv);
}

// Assembly:
pushq %rbp
movq %rsp, %rbp
subq $0x80, %rsp
movq %rdi, -0x8(%rbp)
movl %esi, -0xc(%rbp)
movq %rdx, -0x18(%rbp)
movq -0x8(%rbp), %rdi
movq %rdi, -0x40(%rbp)
addq $0x10, %rdi
movq %rdi, -0x58(%rbp)
callq 0x4560
movq -0x40(%rbp), %rdi
addq $0x30, %rdi
movq %rdi, -0x50(%rbp)
callq 0x4560
movq -0x40(%rbp), %rdi
addq $0x58, %rdi
movq %rdi, -0x30(%rbp)
callq 0x4560
movq -0x40(%rbp), %rdi
addq $0x88, %rdi
movq %rdi, -0x48(%rbp)
callq 0x4560
movq -0x40(%rbp), %rdi
addq $0xd0, %rdi
movq %rdi, -0x38(%rbp)
callq 0x4560
movq -0x30(%rbp), %rdi
leaq 0x8aca(%rip), %rsi      # 0x211fa
callq 0x4550
jmp 0x18737
movq -0x40(%rbp), %rdi
addq $0x88, %rdi
leaq 0x8c83(%rip), %rsi      # 0x213cc
callq 0x4550
jmp 0x18750
movq -0x40(%rbp), %rdi
movb $0x0, 0x8(%rdi)
movb $0x1, 0xb(%rdi)
movb $0x0, 0xc(%rdi)
movb $0x0, 0x9(%rdi)
movb $0x0, 0xa(%rdi)
movb $0x0, 0xd(%rdi)
movb $0x0, 0xe(%rdi)
movl $0x1, 0xc8(%rdi)
movb $0x0, 0x50(%rdi)
movb $0x0, 0xcc(%rdi)
addq $0x10, %rdi
leaq 0x8c48(%rip), %rsi      # 0x213d8
callq 0x4550
jmp 0x18797
movq -0x40(%rbp), %rdi
addq $0x30, %rdi
leaq 0x8cf8(%rip), %rsi      # 0x2149e
callq 0x4550
jmp 0x187ad
movq -0x40(%rbp), %rdi
addq $0xd0, %rdi
leaq 0x99f2(%rip), %rsi      # 0x221b1
callq 0x4550
jmp 0x187c6
movl $0x38, %edi
callq 0x43a0
movq %rax, -0x60(%rbp)
jmp 0x187d6
movq -0x60(%rbp), %rdi
xorps %xmm0, %xmm0
movaps %xmm0, 0x20(%rdi)
movaps %xmm0, 0x10(%rdi)
movaps %xmm0, (%rdi)
movq $0x0, 0x30(%rdi)
callq 0x1b530
movq -0x60(%rbp), %rcx
movq -0x40(%rbp), %rax
movq %rcx, (%rax)
movl $0x30, %edi
callq 0x43a0
movq %rax, -0x68(%rbp)
jmp 0x18810
movb $0x1, -0x26(%rbp)
leaq -0x25(%rbp), %rdi
movq %rdi, -0x70(%rbp)
callq 0xb3a0
movq -0x68(%rbp), %rdi
movq -0x70(%rbp), %rdx
leaq 0x19bc8(%rip), %rsi     # 0x323f8
callq 0x1b550
jmp 0x18837
movq -0x40(%rbp), %rax
movq -0x68(%rbp), %rcx
movb $0x0, -0x26(%rbp)
movq %rcx, 0xa8(%rax)
leaq -0x25(%rbp), %rdi
callq 0xb540
movl $0x38, %edi
callq 0x43a0
movq %rax, -0x78(%rbp)
jmp 0x18863
movq -0x78(%rbp), %rdi
xorps %xmm0, %xmm0
movaps %xmm0, 0x20(%rdi)
movaps %xmm0, 0x10(%rdi)
movaps %xmm0, (%rdi)
movq $0x0, 0x30(%rdi)
callq 0x1b5d0
movq -0x78(%rbp), %rax
movq -0x40(%rbp), %rdi
movq %rax, 0xc0(%rdi)
movl -0xc(%rbp), %esi
movq -0x18(%rbp), %rdx
callq 0x18920
jmp 0x1889f
addq $0x80, %rsp
popq %rbp
retq
movq %rax, %rcx
movl %edx, %eax
movq %rcx, -0x20(%rbp)
movl %eax, -0x24(%rbp)
jmp 0x188e3
movq %rax, %rcx
movl %edx, %eax
movq %rcx, -0x20(%rbp)
movl %eax, -0x24(%rbp)
leaq -0x25(%rbp), %rdi
callq 0xb540
testb $0x1, -0x26(%rbp)
jne 0x188d3
jmp 0x188e1
movq -0x68(%rbp), %rdi
movl $0x30, %esi
callq 0x43b0
jmp 0x188e3
movq -0x38(%rbp), %rdi
callq 0x4788
movq -0x48(%rbp), %rdi
callq 0x4788
movq -0x30(%rbp), %rdi
callq 0x4788
movq -0x50(%rbp), %rdi
callq 0x4788
movq -0x58(%rbp), %rdi
callq 0x4788
movq -0x20(%rbp), %rdi
callq 0x46e0
nopl (%rax)