// File: atfrank[P]PCASA/lib/Prmtop.cpp
// Function: Prmtop::Prmtop()
Prmtop::Prmtop (){
  mass.clear();
  charge.clear();
  atmtype.clear();
  //Hardcode HIS atom types with doubly deprotonated side chain nitrogens
  atmtype.insert(std::make_pair(std::make_pair("HIS","N"), "NH1"));
  atmtype.insert(std::make_pair(std::make_pair("HIS","HN"), "H"));
  atmtype.insert(std::make_pair(std::make_pair("HIS","CA"), "CT1"));
  atmtype.insert(std::make_pair(std::make_pair("HIS","HA"), "HB1"));
  atmtype.insert(std::make_pair(std::make_pair("HIS","CB"), "CT2"));
  atmtype.insert(std::make_pair(std::make_pair("HIS","HB1"), "HA2"));
  atmtype.insert(std::make_pair(std::make_pair("HIS","HB2"), "HA2"));
  atmtype.insert(std::make_pair(std::make_pair("HIS","ND1"), "NR2"));
  atmtype.insert(std::make_pair(std::make_pair("HIS","HD1"), "H"));
  atmtype.insert(std::make_pair(std::make_pair("HIS","CG"), "CPH1"));
  atmtype.insert(std::make_pair(std::make_pair("HIS","CE1"), "CPH2"));
  atmtype.insert(std::make_pair(std::make_pair("HIS","HE1"), "HR1"));
  atmtype.insert(std::make_pair(std::make_pair("HIS","NE2"), "NR2"));
  atmtype.insert(std::make_pair(std::make_pair("HIS","CD2"), "CPH1"));
  atmtype.insert(std::make_pair(std::make_pair("HIS","HD2"), "HR3"));
}

// Assembly:
subq $0x5e8, %rsp            # imm = 0x5E8
movq %rdi, 0x5e0(%rsp)
movq 0x5e0(%rsp), %rdi
movq %rdi, 0x260(%rsp)
movq %rdi, %rax
movq %rax, 0x248(%rsp)
callq 0x5a2d0
movq 0x260(%rsp), %rdi
addq $0x30, %rdi
movq %rdi, 0x268(%rsp)
callq 0x5a2d0
movq 0x260(%rsp), %rdi
addq $0x60, %rdi
movq %rdi, 0x270(%rsp)
movq %rdi, %rax
movq %rax, 0x250(%rsp)
callq 0x5a2e0
movq 0x260(%rsp), %rdi
addq $0x90, %rdi
movq %rdi, 0x258(%rsp)
callq 0x77e0
movq 0x260(%rsp), %rdi
callq 0x5a2f0
movq 0x268(%rsp), %rdi
callq 0x5a2f0
movq 0x270(%rsp), %rdi
callq 0x5a300
leaq 0x236d5(%rip), %rdi     # 0x7b7eb
leaq 0x249cd(%rip), %rsi     # 0x7caea
callq 0x5a3a0
movq %rdx, 0x278(%rsp)
movq %rax, 0x280(%rsp)
jmp 0x58134
movq 0x278(%rsp), %rax
movq 0x280(%rsp), %rcx
movq %rcx, 0x5b8(%rsp)
movq %rax, 0x5c0(%rsp)
leaq 0x244ad(%rip), %rdx     # 0x7c608
leaq 0x5c8(%rsp), %rdi
leaq 0x5b8(%rsp), %rsi
callq 0x5a360
jmp 0x58172
movq 0x270(%rsp), %rdi
leaq 0x5c8(%rsp), %rsi
callq 0x5a310
movb %dl, 0x23f(%rsp)
movq %rax, 0x240(%rsp)
jmp 0x58198
movq 0x248(%rsp), %rax
movb 0x23f(%rsp), %cl
movq 0x240(%rsp), %rdx
movq %rdx, 0x598(%rsp)
movb %cl, 0x5a0(%rsp)
addq $0x60, %rax
movq %rax, 0x220(%rsp)
leaq 0x2361a(%rip), %rdi     # 0x7b7eb
leaq 0x24434(%rip), %rsi     # 0x7c60c
callq 0x5a430
movq %rdx, 0x228(%rsp)
movq %rax, 0x230(%rsp)
jmp 0x581ef
movq 0x228(%rsp), %rax
movq 0x230(%rsp), %rcx
movq %rcx, 0x570(%rsp)
movq %rax, 0x578(%rsp)
leaq 0x243f9(%rip), %rdx     # 0x7c60f
leaq 0x580(%rsp), %rdi
leaq 0x570(%rsp), %rsi
callq 0x5a3f0
jmp 0x5822d
movq 0x220(%rsp), %rdi
leaq 0x580(%rsp), %rsi
callq 0x5a310
movb %dl, 0x217(%rsp)
movq %rax, 0x218(%rsp)
jmp 0x58253
movq 0x248(%rsp), %rax
movb 0x217(%rsp), %cl
movq 0x218(%rsp), %rdx
movq %rdx, 0x560(%rsp)
movb %cl, 0x568(%rsp)
addq $0x60, %rax
movq %rax, 0x1f8(%rsp)
leaq 0x2355f(%rip), %rdi     # 0x7b7eb
leaq 0x22fde(%rip), %rsi     # 0x7b271
callq 0x5a430
movq %rdx, 0x200(%rsp)
movq %rax, 0x208(%rsp)
jmp 0x582aa
movq 0x200(%rsp), %rax
movq 0x208(%rsp), %rcx
movq %rcx, 0x538(%rsp)
movq %rax, 0x540(%rsp)
leaq 0x24340(%rip), %rdx     # 0x7c611
leaq 0x548(%rsp), %rdi
leaq 0x538(%rsp), %rsi
callq 0x5a360
jmp 0x582e8
movq 0x1f8(%rsp), %rdi
leaq 0x548(%rsp), %rsi
callq 0x5a310
movb %dl, 0x1ef(%rsp)
movq %rax, 0x1f0(%rsp)
jmp 0x5830e
movq 0x248(%rsp), %rax
movb 0x1ef(%rsp), %cl
movq 0x1f0(%rsp), %rdx
movq %rdx, 0x528(%rsp)
movb %cl, 0x530(%rsp)
addq $0x60, %rax
movq %rax, 0x1d0(%rsp)
leaq 0x234a4(%rip), %rdi     # 0x7b7eb
leaq 0x242c7(%rip), %rsi     # 0x7c615
callq 0x5a430
movq %rdx, 0x1d8(%rsp)
movq %rax, 0x1e0(%rsp)
jmp 0x58365
movq 0x1d8(%rsp), %rax
movq 0x1e0(%rsp), %rcx
movq %rcx, 0x500(%rsp)
movq %rax, 0x508(%rsp)
leaq 0x2428c(%rip), %rdx     # 0x7c618
leaq 0x510(%rsp), %rdi
leaq 0x500(%rsp), %rsi
callq 0x5a360
jmp 0x583a3
movq 0x1d0(%rsp), %rdi
leaq 0x510(%rsp), %rsi
callq 0x5a310
movb %dl, 0x1c7(%rsp)
movq %rax, 0x1c8(%rsp)
jmp 0x583c9
movq 0x248(%rsp), %rax
movb 0x1c7(%rsp), %cl
movq 0x1c8(%rsp), %rdx
movq %rdx, 0x4f0(%rsp)
movb %cl, 0x4f8(%rsp)
addq $0x60, %rax
movq %rax, 0x1a8(%rsp)
leaq 0x233e9(%rip), %rdi     # 0x7b7eb
leaq 0x22fb3(%rip), %rsi     # 0x7b3bc
callq 0x5a430
movq %rdx, 0x1b0(%rsp)
movq %rax, 0x1b8(%rsp)
jmp 0x58420
movq 0x1b0(%rsp), %rax
movq 0x1b8(%rsp), %rcx
movq %rcx, 0x4c8(%rsp)
movq %rax, 0x4d0(%rsp)
leaq 0x241b9(%rip), %rdx     # 0x7c600
leaq 0x4d8(%rsp), %rdi
leaq 0x4c8(%rsp), %rsi
callq 0x5a360
jmp 0x5845e
movq 0x1a8(%rsp), %rdi
leaq 0x4d8(%rsp), %rsi
callq 0x5a310
movb %dl, 0x19f(%rsp)
movq %rax, 0x1a0(%rsp)
jmp 0x58484
movq 0x248(%rsp), %rax
movb 0x19f(%rsp), %cl
movq 0x1a0(%rsp), %rdx
movq %rdx, 0x4b8(%rsp)
movb %cl, 0x4c0(%rsp)
addq $0x60, %rax
movq %rax, 0x180(%rsp)
leaq 0x2332e(%rip), %rdi     # 0x7b7eb
leaq 0x24154(%rip), %rsi     # 0x7c618
callq 0x5a480
movq %rdx, 0x188(%rsp)
movq %rax, 0x190(%rsp)
jmp 0x584db
movq 0x188(%rsp), %rax
movq 0x190(%rsp), %rcx
movq %rcx, 0x490(%rsp)
movq %rax, 0x498(%rsp)
leaq 0x2411a(%rip), %rdx     # 0x7c61c
leaq 0x4a0(%rsp), %rdi
leaq 0x490(%rsp), %rsi
callq 0x5a360
jmp 0x58519
movq 0x180(%rsp), %rdi
leaq 0x4a0(%rsp), %rsi
callq 0x5a310
movb %dl, 0x177(%rsp)
movq %rax, 0x178(%rsp)
jmp 0x5853f
movq 0x248(%rsp), %rax
movb 0x177(%rsp), %cl
movq 0x178(%rsp), %rdx
movq %rdx, 0x480(%rsp)
movb %cl, 0x488(%rsp)
addq $0x60, %rax
movq %rax, 0x158(%rsp)
leaq 0x23273(%rip), %rdi     # 0x7b7eb
leaq 0x240a1(%rip), %rsi     # 0x7c620
callq 0x5a480
movq %rdx, 0x160(%rsp)
movq %rax, 0x168(%rsp)
jmp 0x58596
movq 0x160(%rsp), %rax
movq 0x168(%rsp), %rcx
movq %rcx, 0x458(%rsp)
movq %rax, 0x460(%rsp)
leaq 0x2405f(%rip), %rdx     # 0x7c61c
leaq 0x468(%rsp), %rdi
leaq 0x458(%rsp), %rsi
callq 0x5a360
jmp 0x585d4
movq 0x158(%rsp), %rdi
leaq 0x468(%rsp), %rsi
callq 0x5a310
movb %dl, 0x14f(%rsp)
movq %rax, 0x150(%rsp)
jmp 0x585fa
movq 0x248(%rsp), %rax
movb 0x14f(%rsp), %cl
movq 0x150(%rsp), %rdx
movq %rdx, 0x448(%rsp)
movb %cl, 0x450(%rsp)
addq $0x60, %rax
movq %rax, 0x130(%rsp)
leaq 0x231b8(%rip), %rdi     # 0x7b7eb
leaq 0x22da7(%rip), %rsi     # 0x7b3e1
callq 0x5a480
movq %rdx, 0x138(%rsp)
movq %rax, 0x140(%rsp)
jmp 0x58651
movq 0x138(%rsp), %rax
movq 0x140(%rsp), %rcx
movq %rcx, 0x420(%rsp)
movq %rax, 0x428(%rsp)
leaq 0x23fac(%rip), %rdx     # 0x7c624
leaq 0x430(%rsp), %rdi
leaq 0x420(%rsp), %rsi
callq 0x5a360
jmp 0x5868f
movq 0x130(%rsp), %rdi
leaq 0x430(%rsp), %rsi
callq 0x5a310
movb %dl, 0x127(%rsp)
movq %rax, 0x128(%rsp)
jmp 0x586b5
movq 0x248(%rsp), %rax
movb 0x127(%rsp), %cl
movq 0x128(%rsp), %rdx
movq %rdx, 0x410(%rsp)
movb %cl, 0x418(%rsp)
addq $0x60, %rax
movq %rax, 0x108(%rsp)
leaq 0x230fd(%rip), %rdi     # 0x7b7eb
leaq 0x23f33(%rip), %rsi     # 0x7c628
callq 0x5a480
movq %rdx, 0x110(%rsp)
movq %rax, 0x118(%rsp)
jmp 0x5870c
movq 0x110(%rsp), %rax
movq 0x118(%rsp), %rcx
movq %rcx, 0x3e8(%rsp)
movq %rax, 0x3f0(%rsp)
leaq 0x23edc(%rip), %rdx     # 0x7c60f
leaq 0x3f8(%rsp), %rdi
leaq 0x3e8(%rsp), %rsi
callq 0x5a3f0
jmp 0x5874a
movq 0x108(%rsp), %rdi
leaq 0x3f8(%rsp), %rsi
callq 0x5a310
movb %dl, 0xff(%rsp)
movq %rax, 0x100(%rsp)
jmp 0x58770
movq 0x248(%rsp), %rax
movb 0xff(%rsp), %cl
movq 0x100(%rsp), %rdx
movq %rdx, 0x3d8(%rsp)
movb %cl, 0x3e0(%rsp)
addq $0x60, %rax
movq %rax, 0xe0(%rsp)
leaq 0x23042(%rip), %rdi     # 0x7b7eb
leaq 0x22c1a(%rip), %rsi     # 0x7b3ca
callq 0x5a430
movq %rdx, 0xe8(%rsp)
movq %rax, 0xf0(%rsp)
jmp 0x587c7
movq 0xe8(%rsp), %rax
movq 0xf0(%rsp), %rcx
movq %rcx, 0x3b0(%rsp)
movq %rax, 0x3b8(%rsp)
leaq 0x23e3e(%rip), %rdx     # 0x7c62c
leaq 0x3c0(%rsp), %rdi
leaq 0x3b0(%rsp), %rsi
callq 0x5a4d0
jmp 0x58805
movq 0xe0(%rsp), %rdi
leaq 0x3c0(%rsp), %rsi
callq 0x5a310
movb %dl, 0xd7(%rsp)
movq %rax, 0xd8(%rsp)
jmp 0x5882b
movq 0x248(%rsp), %rax
movb 0xd7(%rsp), %cl
movq 0xd8(%rsp), %rdx
movq %rdx, 0x3a0(%rsp)
movb %cl, 0x3a8(%rsp)
addq $0x60, %rax
movq %rax, 0xb8(%rsp)
leaq 0x22f87(%rip), %rdi     # 0x7b7eb
leaq 0x23dc6(%rip), %rsi     # 0x7c631
callq 0x5a480
movq %rdx, 0xc0(%rsp)
movq %rax, 0xc8(%rsp)
jmp 0x58882
movq 0xc0(%rsp), %rax
movq 0xc8(%rsp), %rcx
movq %rcx, 0x378(%rsp)
movq %rax, 0x380(%rsp)
leaq 0x23d8c(%rip), %rdx     # 0x7c635
leaq 0x388(%rsp), %rdi
leaq 0x378(%rsp), %rsi
callq 0x5a4d0
jmp 0x588c0
movq 0xb8(%rsp), %rdi
leaq 0x388(%rsp), %rsi
callq 0x5a310
movb %dl, 0xaf(%rsp)
movq %rax, 0xb0(%rsp)
jmp 0x588e6
movq 0x248(%rsp), %rax
movb 0xaf(%rsp), %cl
movq 0xb0(%rsp), %rdx
movq %rdx, 0x368(%rsp)
movb %cl, 0x370(%rsp)
addq $0x60, %rax
movq %rax, 0x90(%rsp)
leaq 0x22ecc(%rip), %rdi     # 0x7b7eb
leaq 0x23d14(%rip), %rsi     # 0x7c63a
callq 0x5a480
movq %rdx, 0x98(%rsp)
movq %rax, 0xa0(%rsp)
jmp 0x5893d
movq 0x98(%rsp), %rax
movq 0xa0(%rsp), %rcx
movq %rcx, 0x340(%rsp)
movq %rax, 0x348(%rsp)
leaq 0x23cda(%rip), %rdx     # 0x7c63e
leaq 0x350(%rsp), %rdi
leaq 0x340(%rsp), %rsi
callq 0x5a360
jmp 0x5897b
movq 0x90(%rsp), %rdi
leaq 0x350(%rsp), %rsi
callq 0x5a310
movb %dl, 0x87(%rsp)
movq %rax, 0x88(%rsp)
jmp 0x589a1
movq 0x248(%rsp), %rax
movb 0x87(%rsp), %cl
movq 0x88(%rsp), %rdx
movq %rdx, 0x330(%rsp)
movb %cl, 0x338(%rsp)
addq $0x60, %rax
movq %rax, 0x68(%rsp)
leaq 0x22e14(%rip), %rdi     # 0x7b7eb
leaq 0x23c64(%rip), %rsi     # 0x7c642
callq 0x5a480
movq %rdx, 0x70(%rsp)
movq %rax, 0x78(%rsp)
jmp 0x589ef
movq 0x70(%rsp), %rax
movq 0x78(%rsp), %rcx
movq %rcx, 0x308(%rsp)
movq %rax, 0x310(%rsp)
leaq 0x23c14(%rip), %rdx     # 0x7c624
leaq 0x318(%rsp), %rdi
leaq 0x308(%rsp), %rsi
callq 0x5a360
jmp 0x58a27
movq 0x68(%rsp), %rdi
leaq 0x318(%rsp), %rsi
callq 0x5a310
movb %dl, 0x5f(%rsp)
movq %rax, 0x60(%rsp)
jmp 0x58a44
movq 0x248(%rsp), %rax
movb 0x5f(%rsp), %cl
movq 0x60(%rsp), %rdx
movq %rdx, 0x2f8(%rsp)
movb %cl, 0x300(%rsp)
addq $0x60, %rax
movq %rax, 0x40(%rsp)
leaq 0x22d77(%rip), %rdi     # 0x7b7eb
leaq 0x23bcb(%rip), %rsi     # 0x7c646
callq 0x5a480
movq %rdx, 0x48(%rsp)
movq %rax, 0x50(%rsp)
jmp 0x58a8c
movq 0x48(%rsp), %rax
movq 0x50(%rsp), %rcx
movq %rcx, 0x2d0(%rsp)
movq %rax, 0x2d8(%rsp)
leaq 0x23b7f(%rip), %rdx     # 0x7c62c
leaq 0x2e0(%rsp), %rdi
leaq 0x2d0(%rsp), %rsi
callq 0x5a4d0
jmp 0x58ac4
movq 0x40(%rsp), %rdi
leaq 0x2e0(%rsp), %rsi
callq 0x5a310
movb %dl, 0x37(%rsp)
movq %rax, 0x38(%rsp)
jmp 0x58ae1
movq 0x248(%rsp), %rax
movb 0x37(%rsp), %cl
movq 0x38(%rsp), %rdx
movq %rdx, 0x2c0(%rsp)
movb %cl, 0x2c8(%rsp)
addq $0x60, %rax
movq %rax, 0x18(%rsp)
leaq 0x22cda(%rip), %rdi     # 0x7b7eb
leaq 0x23b32(%rip), %rsi     # 0x7c64a
callq 0x5a480
movq %rdx, 0x20(%rsp)
movq %rax, 0x28(%rsp)
jmp 0x58b29
movq 0x20(%rsp), %rax
movq 0x28(%rsp), %rcx
movq %rcx, 0x298(%rsp)
movq %rax, 0x2a0(%rsp)
leaq 0x23b04(%rip), %rdx     # 0x7c64e
leaq 0x2a8(%rsp), %rdi
leaq 0x298(%rsp), %rsi
callq 0x5a360
jmp 0x58b61
movq 0x18(%rsp), %rdi
leaq 0x2a8(%rsp), %rsi
callq 0x5a310
movb %dl, 0xf(%rsp)
movq %rax, 0x10(%rsp)
jmp 0x58b7e
movb 0xf(%rsp), %al
movq 0x10(%rsp), %rcx
movq %rcx, 0x288(%rsp)
movb %al, 0x290(%rsp)
addq $0x5e8, %rsp            # imm = 0x5E8
retq
movq 0x258(%rsp), %rdi
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x5b0(%rsp)
movl %eax, 0x5ac(%rsp)
callq 0x7ab0
movq 0x250(%rsp), %rdi
callq 0x48090
movq 0x268(%rsp), %rdi
callq 0x480a0
movq 0x260(%rsp), %rdi
callq 0x480a0
movq 0x5b0(%rsp), %rdi
callq 0x5720
nopw %cs:(%rax,%rax)