// File: /workspace/github_cpp_makefile_star2_O1/millanek[P]evo/./process_vcf_coding_sequences.h
// Function: pNsets::pNsets(std::basic_ifstream<char, std::char_traits<char>>*&)
pNsets(std::ifstream*& setsFile) {
        string line;
        string set1String; string set2String; string set3String;
        getline(*setsFile, set1String);
        getline(*setsFile, set2String);
        getline(*setsFile, set3String);
        std::vector<string> set1 = split(set1String, ',');
        std::vector<string> set2 = split(set2String, ',');
        std::vector<string> set3 = split(set3String, ',');
        for (int i = 0; i < set1.size(); i++) {
            set1Loci.insert(atoi(set1[i].c_str()));
        }
        for (int i = 0; i < set2.size(); i++) {
            set2Loci.insert(atoi(set2[i].c_str()));
        }
        for (int i = 0; i < set3.size(); i++) {
            set3Loci.insert(atoi(set3[i].c_str()));
        }
        std::cerr << "set 1: "; print_vector(set1, std::cerr);
        std::cerr << "set 2: "; print_vector(set2, std::cerr);
        std::cerr << "set 3: "; print_vector(set3, std::cerr);
        initialised = true;
    }

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
subq $0x128, %rsp            # imm = 0x128
movq %rsi, %r12
movq %rdi, %rbx
leaq 0x30(%rdi), %rax
movq %rax, (%rdi)
movl $0x1, %eax
movq %rax, 0x8(%rdi)
xorps %xmm0, %xmm0
movups %xmm0, 0x10(%rdi)
movl $0x3f800000, %ecx       # imm = 0x3F800000
movl %ecx, 0x20(%rdi)
movups %xmm0, 0x28(%rdi)
leaq 0x38(%rdi), %rdx
movq %rdx, 0x10(%rsp)
leaq 0x68(%rdi), %rdx
movq %rdx, 0x38(%rdi)
movq %rax, 0x40(%rdi)
movups %xmm0, 0x48(%rdi)
movl %ecx, 0x58(%rdi)
movups %xmm0, 0x60(%rdi)
leaq 0x70(%rdi), %r15
leaq 0xa0(%rdi), %rdx
movq %rdx, 0x70(%rdi)
movq %rax, 0x78(%rdi)
movups %xmm0, 0x80(%rdi)
movl %ecx, 0x90(%rdi)
movups %xmm0, 0x98(%rdi)
leaq 0xd0(%rsp), %rcx
movq %rcx, -0x10(%rcx)
xorl %eax, %eax
movq %rax, -0x8(%rcx)
movb %al, (%rcx)
leaq 0xb0(%rsp), %rcx
movq %rcx, -0x10(%rcx)
movq %rax, -0x8(%rcx)
movb %al, (%rcx)
leaq 0x90(%rsp), %rcx
movq %rcx, -0x10(%rcx)
movq %rax, -0x8(%rcx)
movb %al, (%rcx)
leaq 0x70(%rsp), %rcx
movq %rcx, -0x10(%rcx)
movq %rax, -0x8(%rcx)
movb %al, (%rcx)
movq (%rsi), %r13
movq (%r13), %rax
movq -0x18(%rax), %rdi
addq %r13, %rdi
movl $0xa, %esi
callq 0x8450
movsbl %al, %edx
leaq 0xa0(%rsp), %rsi
movq %r13, %rdi
callq 0x8870
movq (%r12), %r13
movq (%r13), %rax
movq -0x18(%rax), %rdi
addq %r13, %rdi
movl $0xa, %esi
callq 0x8450
movsbl %al, %edx
leaq 0x80(%rsp), %rsi
movq %r13, %rdi
callq 0x8870
movq (%r12), %r12
movq (%r12), %rax
movq -0x18(%rax), %rdi
addq %r12, %rdi
movl $0xa, %esi
callq 0x8450
movsbl %al, %edx
leaq 0x60(%rsp), %rsi
movq %r12, %rdi
callq 0x8870
leaq 0x48(%rsp), %rdi
leaq 0xa0(%rsp), %rsi
movl $0x2c, %edx
callq 0x50624
leaq 0x30(%rsp), %rdi
leaq 0x80(%rsp), %rsi
movl $0x2c, %edx
callq 0x50624
leaq 0x18(%rsp), %rdi
leaq 0x60(%rsp), %rsi
movl $0x2c, %edx
callq 0x50624
movq 0x48(%rsp), %rax
cmpq %rax, 0x50(%rsp)
je 0x45a98
xorl %ebp, %ebp
movq %rsp, %r12
leaq 0x8(%rsp), %r13
xorl %r14d, %r14d
movq (%rax,%rbp), %rdi
callq 0x86e0
cltq
movq %rax, (%rsp)
movq %rbx, 0x8(%rsp)
movq %rbx, %rdi
movq %r12, %rsi
movq %r13, %rdx
callq 0x45f54
incq %r14
movq 0x48(%rsp), %rax
movq 0x50(%rsp), %rcx
subq %rax, %rcx
sarq $0x5, %rcx
addq $0x20, %rbp
cmpq %r14, %rcx
ja 0x45a59
movq 0x30(%rsp), %rax
cmpq %rax, 0x38(%rsp)
je 0x45af2
xorl %ebp, %ebp
movq %rsp, %r12
leaq 0x8(%rsp), %r13
xorl %r14d, %r14d
movq (%rax,%rbp), %rdi
callq 0x86e0
cltq
movq %rax, (%rsp)
movq 0x10(%rsp), %rdi
movq %rdi, 0x8(%rsp)
movq %r12, %rsi
movq %r13, %rdx
callq 0x45f54
incq %r14
movq 0x30(%rsp), %rax
movq 0x38(%rsp), %rcx
subq %rax, %rcx
sarq $0x5, %rcx
addq $0x20, %rbp
cmpq %r14, %rcx
ja 0x45ab1
movq 0x18(%rsp), %rax
cmpq %rax, 0x20(%rsp)
je 0x45b4a
xorl %ebp, %ebp
movq %rsp, %r12
leaq 0x8(%rsp), %r13
xorl %r14d, %r14d
movq (%rax,%rbp), %rdi
callq 0x86e0
cltq
movq %rax, (%rsp)
movq %r15, 0x8(%rsp)
movq %r15, %rdi
movq %r12, %rsi
movq %r13, %rdx
callq 0x45f54
incq %r14
movq 0x18(%rsp), %rax
movq 0x20(%rsp), %rcx
subq %rax, %rcx
sarq $0x5, %rcx
addq $0x20, %rbp
cmpq %r14, %rcx
ja 0x45b0b
movq 0xc5497(%rip), %rdi     # 0x10afe8
leaq 0x8ea94(%rip), %rsi     # 0xd45ec
movl $0x7, %edx
callq 0x84e0
leaq 0x110(%rsp), %rdi
leaq 0x48(%rsp), %rsi
callq 0x3273a
movq 0xc546d(%rip), %rsi     # 0x10afe8
leaq 0x110(%rsp), %rdi
movl $0x9, %edx
movl $0x1, %ecx
callq 0x39979
leaq 0x110(%rsp), %rdi
callq 0x3123c
movq 0xc5442(%rip), %rdi     # 0x10afe8
leaq 0x8ea47(%rip), %rsi     # 0xd45f4
movl $0x7, %edx
callq 0x84e0
leaq 0xf8(%rsp), %rdi
leaq 0x30(%rsp), %rsi
callq 0x3273a
movq 0xc5418(%rip), %rsi     # 0x10afe8
leaq 0xf8(%rsp), %rdi
movl $0x9, %edx
movl $0x1, %ecx
callq 0x39979
leaq 0xf8(%rsp), %rdi
callq 0x3123c
movq 0xc53ed(%rip), %rdi     # 0x10afe8
leaq 0x8e9fa(%rip), %rsi     # 0xd45fc
movl $0x7, %edx
callq 0x84e0
leaq 0xe0(%rsp), %rdi
leaq 0x18(%rsp), %rsi
callq 0x3273a
movq 0xc53c3(%rip), %rsi     # 0x10afe8
leaq 0xe0(%rsp), %rdi
movl $0x9, %edx
movl $0x1, %ecx
callq 0x39979
leaq 0xe0(%rsp), %rdi
callq 0x3123c
movb $0x1, 0xd8(%rbx)
leaq 0x18(%rsp), %rdi
callq 0x3123c
leaq 0x30(%rsp), %rdi
callq 0x3123c
leaq 0x48(%rsp), %rdi
callq 0x3123c
movq 0x60(%rsp), %rdi
leaq 0x70(%rsp), %rax
cmpq %rax, %rdi
je 0x45c8a
movq 0x70(%rsp), %rsi
incq %rsi
callq 0x8480
movq 0x80(%rsp), %rdi
leaq 0x90(%rsp), %rax
cmpq %rax, %rdi
je 0x45caf
movq 0x90(%rsp), %rsi
incq %rsi
callq 0x8480
movq 0xa0(%rsp), %rdi
leaq 0xb0(%rsp), %rax
cmpq %rax, %rdi
je 0x45cd4
movq 0xb0(%rsp), %rsi
incq %rsi
callq 0x8480
movq 0xc0(%rsp), %rdi
leaq 0xd0(%rsp), %rax
cmpq %rax, %rdi
je 0x45cf9
movq 0xd0(%rsp), %rsi
incq %rsi
callq 0x8480
addq $0x128, %rsp            # imm = 0x128
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
retq
movq %rax, %r12
leaq 0xe0(%rsp), %rdi
jmp 0x45d30
movq %rax, %r12
leaq 0xf8(%rsp), %rdi
jmp 0x45d30
movq %rax, %r12
leaq 0x110(%rsp), %rdi
callq 0x3123c
jmp 0x45d51
movq %rax, %r12
jmp 0x45d5b
movq %rax, %r12
jmp 0x45d65
jmp 0x45d45
jmp 0x45d4e
movq %rax, %r12
jmp 0x45d6f
jmp 0x45d4e
jmp 0x45d4e
movq %rax, %r12
leaq 0x18(%rsp), %rdi
callq 0x3123c
leaq 0x30(%rsp), %rdi
callq 0x3123c
leaq 0x48(%rsp), %rdi
callq 0x3123c
movq 0x60(%rsp), %rdi
leaq 0x70(%rsp), %rax
cmpq %rax, %rdi
je 0x45d8b
movq 0x70(%rsp), %rsi
incq %rsi
callq 0x8480
movq 0x80(%rsp), %rdi
leaq 0x90(%rsp), %rax
cmpq %rax, %rdi
je 0x45db0
movq 0x90(%rsp), %rsi
incq %rsi
callq 0x8480
movq 0xa0(%rsp), %rdi
leaq 0xb0(%rsp), %rax
cmpq %rax, %rdi
je 0x45dd5
movq 0xb0(%rsp), %rsi
incq %rsi
callq 0x8480
movq 0xc0(%rsp), %rdi
leaq 0xd0(%rsp), %rax
cmpq %rax, %rdi
je 0x45dfa
movq 0xd0(%rsp), %rsi
incq %rsi
callq 0x8480
movq %r15, %rdi
callq 0x4621a
movq 0x10(%rsp), %rdi
callq 0x4621a
movq %rbx, %rdi
callq 0x4621a
movq %r12, %rdi
callq 0x8840