// File: /workspace/github_cpp_makefile_star2_O3/BenLangmead[P]bowtie/./aligner_1mm.h
// Function: Unpaired1mmAlignerV1Factory::create() const
virtual Aligner* create() const {

		HitSinkPerThread* sinkPt = sinkPtFactory_.create();
		EbwtSearchParams* params =
			new EbwtSearchParams(*sinkPt, os_);

		const int halfAndHalf = 0;
		const bool seeded = false;

		EbwtRangeSource *rFw_Bw = new EbwtRangeSource(
			 ebwtBw_, true, OFF_MASK, true,  verbose_, quiet_, halfAndHalf, seeded, maqPenalty_, qualOrder_);
		EbwtRangeSource *rFw_Fw = new EbwtRangeSource(
			&ebwtFw_, true, OFF_MASK, false, verbose_, quiet_, halfAndHalf, seeded, maqPenalty_, qualOrder_);

		EbwtRangeSourceDriver * drFw_Bw = new EbwtRangeSourceDriver(
			*params, rFw_Bw, true, false, maqPenalty_, qualOrder_, sink_, sinkPt,
			0,          // seedLen (0 = whole read is seed)
			false,      // nudgeLeft (true for Fw index, false for Bw)
			PIN_TO_HI_HALF_EDGE, // right half is unrevisitable
			PIN_TO_LEN, // allow 1 mismatch in rest of read
			PIN_TO_LEN, // "
			PIN_TO_LEN, // "
			os_, verbose_, quiet_, true, pool_, NULL);
		//
		EbwtRangeSourceDriver * drFw_Fw = new EbwtRangeSourceDriver(
			*params, rFw_Fw, true, false, maqPenalty_, qualOrder_, sink_, sinkPt,
			0,          // seedLen (0 = whole read is seed)
			true,       // nudgeLeft (true for Fw index, false for Bw)
			PIN_TO_HI_HALF_EDGE, // right half is unrevisitable
			PIN_TO_LEN, // allow 1 mismatch in rest of read
			PIN_TO_LEN, // "
			PIN_TO_LEN, // "
			os_, verbose_, quiet_, true, pool_, NULL);
		TRangeSrcDrPtrVec *drVec = new TRangeSrcDrPtrVec();
		if(doFw_) {
			drVec->push_back(drFw_Bw);
			drVec->push_back(drFw_Fw);
		}

		EbwtRangeSource *rRc_Fw = new EbwtRangeSource(
			&ebwtFw_, false, OFF_MASK, true,  verbose_, quiet_, halfAndHalf, seeded, maqPenalty_, qualOrder_);
		EbwtRangeSource *rRc_Bw = new EbwtRangeSource(
			 ebwtBw_, false, OFF_MASK, false, verbose_, quiet_, halfAndHalf, seeded, maqPenalty_, qualOrder_);

		EbwtRangeSourceDriver * drRc_Fw = new EbwtRangeSourceDriver(
			*params, rRc_Fw, false, false, maqPenalty_, qualOrder_, sink_, sinkPt,
			0,          // seedLen (0 = whole read is seed)
			true,       // nudgeLeft (true for Fw index, false for Bw)
			PIN_TO_HI_HALF_EDGE, // right half is unrevisitable
			PIN_TO_LEN, // allow 1 mismatch in rest of read
			PIN_TO_LEN, // "
			PIN_TO_LEN, // "
			os_, verbose_, quiet_, true, pool_, NULL);
		//
		EbwtRangeSourceDriver * drRc_Bw = new EbwtRangeSourceDriver(
			*params, rRc_Bw, false, false, maqPenalty_, qualOrder_, sink_, sinkPt,
			0,          // seedLen (0 = whole read is seed)
			false,      // nudgeLeft (true for Fw index, false for Bw)
			PIN_TO_HI_HALF_EDGE, // right half is unrevisitable
			PIN_TO_LEN, // allow 1 mismatch in rest of read
			PIN_TO_LEN, // "
			PIN_TO_LEN, // "
			os_, verbose_, quiet_, true, pool_, NULL);
		if(doRc_) {
			drVec->push_back(drRc_Fw);
			drVec->push_back(drRc_Bw);
		}
		TCostAwareRangeSrcDr* dr = new TCostAwareRangeSrcDr(strandFix_, drVec, verbose_, quiet_, false);
		delete drVec;

		// Set up a RangeChaser
		RangeChaser *rchase =
			new RangeChaser(cacheLimit_, cacheFw_, cacheBw_);

		// Set up the aligner
		return new UnpairedAlignerV2<EbwtRangeSource>(
			params, dr, rchase,
			sink_, sinkPtFactory_, sinkPt, os_, refs_,
			rangeMode_, verbose_, quiet_, INT_MAX, pool_, NULL, NULL);
	}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
subq $0x28, %rsp
movq %rdi, %r15
movq 0x28(%rdi), %rdi
movq (%rdi), %rax
callq *0x10(%rax)
movq %rax, %rbx
movl $0x18, %edi
callq 0x94b0
movq %rax, %r14
movq 0x50(%r15), %rax
movq %rbx, 0x20(%rsp)
movq %rbx, (%r14)
movq %rax, 0x8(%r14)
movl $0xffffffff, 0x10(%r14) # imm = 0xFFFFFFFF
movb $0x1, 0x14(%r14)
movl $0x188, %edi            # imm = 0x188
callq 0x94b0
movq %rax, %rbp
movq 0x10(%r15), %rsi
movzbl 0x64(%r15), %r9d
movzbl 0x65(%r15), %eax
movzbl 0x60(%r15), %r10d
movzbl 0x61(%r15), %r11d
xorl %ebx, %ebx
movq %rbp, %rdi
movl $0x1, %edx
movl $0xffffffff, %ecx       # imm = 0xFFFFFFFF
movl $0x1, %r8d
pushq $0x0
pushq %r11
pushq %r10
pushq %rbx
pushq %rbx
pushq %rax
callq 0x29826
addq $0x30, %rsp
movq %r14, 0x8(%rsp)
movl $0x188, %edi            # imm = 0x188
callq 0x94b0
movq %rax, %r12
movq 0x8(%r15), %rsi
movzbl 0x64(%r15), %r9d
movzbl 0x65(%r15), %eax
movzbl 0x60(%r15), %r10d
movzbl 0x61(%r15), %r11d
movq %r12, %rdi
movl $0x1, %edx
movl $0xffffffff, %ecx       # imm = 0xFFFFFFFF
xorl %r8d, %r8d
pushq $0x0
pushq %r11
pushq %r10
pushq %rbx
pushq %rbx
pushq %rax
callq 0x29826
addq $0x30, %rsp
movl $0x1e0, %edi            # imm = 0x1E0
callq 0x94b0
movq %rax, %rdi
movzbl 0x60(%r15), %r9d
movzbl 0x61(%r15), %eax
movzbl 0x64(%r15), %r11d
movzbl 0x65(%r15), %ebx
subq $0x8, %rsp
movl $0x2, %r13d
xorl %r10d, %r10d
movq %rdi, 0x8(%rsp)
movq 0x10(%rsp), %r14
movq %r14, %rsi
movq %rbp, %rdx
movl $0x1, %ecx
xorl %r8d, %r8d
pushq $0x0
pushq 0x48(%r15)
pushq $0x1
pushq %rbx
pushq %r11
pushq 0x50(%r15)
pushq %r13
pushq %r13
pushq %r13
pushq $0x3
pushq %r10
pushq %r10
movq 0x88(%rsp), %rbp
pushq %rbp
pushq 0x20(%r15)
pushq %rax
callq 0x299d6
addq $0x80, %rsp
movl $0x1e0, %edi            # imm = 0x1E0
callq 0x94b0
movq %rax, %rbx
movzbl 0x60(%r15), %r9d
movzbl 0x61(%r15), %eax
movzbl 0x64(%r15), %r10d
movzbl 0x65(%r15), %r11d
subq $0x8, %rsp
movq %rbx, %rdi
movq %r14, %rsi
movq %r12, %rdx
movl $0x1, %ecx
xorl %r8d, %r8d
pushq $0x0
pushq 0x48(%r15)
movl $0x1, %r14d
pushq %r14
pushq %r11
pushq %r10
pushq 0x50(%r15)
pushq %r13
pushq %r13
pushq %r13
pushq $0x3
pushq %r14
pushq $0x0
pushq %rbp
pushq 0x20(%r15)
pushq %rax
callq 0x299d6
addq $0x80, %rsp
movl $0x20, %edi
callq 0x94b0
movq %rax, %r12
movabsq $-0x100000000, %rax     # imm = 0xFFFFFFFF00000000
movq %rax, (%r12)
xorl %r13d, %r13d
movq %r13, 0x8(%r12)
movq $0x80, 0x10(%r12)
movq %r13, 0x18(%r12)
cmpb $0x1, 0x18(%r15)
jne 0x41456
leaq 0x10(%rsp), %rbp
movq (%rsp), %rax
movq %rax, (%rbp)
movq %r12, %rdi
movq %rbp, %rsi
callq 0x29aec
movq %rbx, (%rbp)
leaq 0x10(%rsp), %rsi
movq %r12, %rdi
callq 0x29aec
movl $0x188, %edi            # imm = 0x188
callq 0x94b0
movq %rax, %rbx
movq 0x8(%r15), %rsi
movzbl 0x64(%r15), %r9d
movzbl 0x65(%r15), %eax
movzbl 0x60(%r15), %r10d
movzbl 0x61(%r15), %r11d
movq %rbx, %rdi
xorl %edx, %edx
movl $0xffffffff, %ecx       # imm = 0xFFFFFFFF
movl $0x1, %r8d
pushq $0x0
pushq %r11
pushq %r10
pushq %r13
pushq %r13
pushq %rax
callq 0x29826
addq $0x30, %rsp
movl $0x188, %edi            # imm = 0x188
callq 0x94b0
movq %rax, %rdi
movq 0x10(%r15), %rsi
movzbl 0x64(%r15), %r9d
movzbl 0x65(%r15), %eax
movzbl 0x60(%r15), %r10d
movzbl 0x61(%r15), %r11d
xorl %r13d, %r13d
movq %rdi, (%rsp)
xorl %edx, %edx
movl $0xffffffff, %ecx       # imm = 0xFFFFFFFF
xorl %r8d, %r8d
pushq $0x0
pushq %r11
pushq %r10
pushq %r13
pushq %r13
pushq %rax
callq 0x29826
addq $0x30, %rsp
movl $0x1e0, %edi            # imm = 0x1E0
callq 0x94b0
movq %rax, %rdi
movzbl 0x60(%r15), %r9d
movzbl 0x61(%r15), %eax
movzbl 0x64(%r15), %r11d
movzbl 0x65(%r15), %r14d
subq $0x8, %rsp
movl $0x1, %r10d
movl $0x2, %r13d
movq %rdi, 0x20(%rsp)
movq 0x10(%rsp), %rbp
movq %rbp, %rsi
movq %rbx, %rdx
xorl %ecx, %ecx
xorl %r8d, %r8d
pushq $0x0
pushq 0x48(%r15)
pushq %r10
pushq %r14
pushq %r11
pushq 0x50(%r15)
pushq %r13
pushq %r13
pushq %r13
pushq $0x3
pushq %r10
pushq $0x0
movq 0x88(%rsp), %r14
pushq %r14
pushq 0x20(%r15)
pushq %rax
callq 0x299d6
addq $0x80, %rsp
movl $0x1e0, %edi            # imm = 0x1E0
callq 0x94b0
movq %rax, %rbx
movzbl 0x60(%r15), %r9d
movzbl 0x61(%r15), %eax
movzbl 0x64(%r15), %r10d
movzbl 0x65(%r15), %r11d
subq $0x8, %rsp
movq %rbx, %rdi
movq %rbp, %rsi
movq 0x8(%rsp), %rdx
xorl %ecx, %ecx
xorl %r8d, %r8d
pushq $0x0
pushq 0x48(%r15)
pushq $0x1
pushq %r11
pushq %r10
pushq 0x50(%r15)
pushq %r13
pushq %r13
pushq %r13
pushq $0x3
movl $0x0, %r10d
pushq %r10
pushq %r10
pushq %r14
pushq 0x20(%r15)
pushq %rax
callq 0x299d6
addq $0x80, %rsp
cmpb $0x1, 0x19(%r15)
jne 0x41601
leaq 0x10(%rsp), %rbp
movq 0x18(%rsp), %rax
movq %rax, (%rbp)
movq %r12, %rdi
movq %rbp, %rsi
callq 0x29aec
movq %rbx, (%rbp)
leaq 0x10(%rsp), %rsi
movq %r12, %rdi
callq 0x29aec
movl $0x90, %edi
callq 0x94b0
movq %rax, %rbx
movzbl 0x62(%r15), %esi
movzbl 0x64(%r15), %ecx
movzbl 0x65(%r15), %r8d
movq %rax, %rdi
movq %r12, %rdx
xorl %r9d, %r9d
callq 0x29c56
movq %r12, %r13
addq $0x8, %r13
movq (%r13), %rdi
testq %rdi, %rdi
je 0x41650
callq 0x95e0
xorps %xmm0, %xmm0
movups %xmm0, (%r13)
movq $0x0, 0x10(%r13)
movl $0x20, %esi
movq %r12, %rdi
callq 0x94c0
movl $0xc8, %edi
callq 0x94b0
movq %rax, %r12
movl 0x40(%r15), %esi
movq 0x30(%r15), %rdx
movq 0x38(%r15), %rcx
movq %rax, %rdi
xorl %r8d, %r8d
callq 0x29d74
movl $0xa8, %edi
callq 0x94b0
movq 0x58(%r15), %rcx
movb 0x63(%r15), %dl
movzwl 0x64(%r15), %esi
movq 0x28(%r15), %rdi
movq 0x48(%r15), %r8
movb $0x1, %r9b
movb %r9b, 0x8(%rax)
movq $0x0, 0x28(%rax)
xorps %xmm0, %xmm0
movups %xmm0, 0x10(%rax)
movb %dl, 0x34(%rax)
movabsq $0x3c6ef35f0019660d, %rdx # imm = 0x3C6EF35F0019660D
movq %rdx, 0x38(%rax)
movb $0x0, 0x48(%rax)
leaq 0x27b16(%rip), %rdx     # 0x691e8
movq %rdx, (%rax)
movq %rcx, 0x50(%rax)
movb %r9b, 0x58(%rax)
movw $0x1, 0x59(%rax)
movq %rdi, 0x60(%rax)
movq %r14, 0x68(%rax)
movq 0x8(%rsp), %rcx
movq %rcx, 0x70(%rax)
movq %r12, 0x78(%rax)
movq %rbx, 0x80(%rax)
movw %si, 0x88(%rax)
movl $0x7fffffff, 0x8c(%rax) # imm = 0x7FFFFFFF
movq %r8, 0x90(%rax)
movups %xmm0, 0x98(%rax)
addq $0x28, %rsp
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
retq
movq %rax, %r14
movl $0xc8, %esi
jmp 0x41789
movq %rax, %r14
movl $0x90, %esi
jmp 0x4176e
jmp 0x41766
movq %rax, %r14
movl $0x1e0, %esi            # imm = 0x1E0
movq 0x18(%rsp), %rdi
jmp 0x41799
movq %rax, %r14
movl $0x188, %esi            # imm = 0x188
jmp 0x4177b
movq %rax, %r14
movl $0x188, %esi            # imm = 0x188
jmp 0x4176e
movq %rax, %r14
movl $0x1e0, %esi            # imm = 0x1E0
movq %rbx, %rdi
jmp 0x41799
movq %rax, %r14
movl $0x1e0, %esi            # imm = 0x1E0
movq (%rsp), %rdi
jmp 0x41799
movq %rax, %r14
movl $0x188, %esi            # imm = 0x188
movq %r12, %rdi
jmp 0x41799
movq %rax, %r14
movl $0x188, %esi            # imm = 0x188
movq %rbp, %rdi
callq 0x94c0
movq %r14, %rdi
callq 0x9930