// File: /workspace/github_cpp_makefile_star2_O3/ncbi[P]amr/amrfinder.cpp
// Function: (anonymous namespace)::ThisApplication::prepare_fasta_extract(Common_sp::StringVector const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char>> const&, bool) const
void prepare_fasta_extract (const StringVector &columns,
                              const string &tmpSuf,
                              bool saveHeader) const
  // Input: tmp + "/amr"
  {
    TextTable t (tmp + "/amr");
    t. qc ();
    t. filterColumns (columns);
    t. rows. filterValue ([] (const StringVector& row) { return row [0] == "NA"; });
    t. rows. sort ();
    t. rows. uniq ();
    t. saveHeader = saveHeader;
    t. qc ();
    t. saveFile (tmp + "/" + tmpSuf);
  }

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
subq $0xc8, %rsp
movl %ecx, %r12d
movq %rdx, %r13
movq %rsi, %rbx
movq %rdi, %rbp
leaq 0x10(%rsp), %r15
movq %r15, -0x10(%r15)
movq 0x168(%rdi), %rsi
movq 0x170(%rdi), %rdx
addq %rsi, %rdx
movq %rsp, %r14
movq %r14, %rdi
callq 0x2c212
leaq 0x6068d(%rip), %rsi     # 0x8bdf8
movq %r14, %rdi
callq 0xaac0
leaq 0x8535e(%rip), %rdx     # 0xb0ad8
leaq 0x58(%rsp), %rdi
movq %rsp, %rsi
movl $0x1, %ecx
xorl %r8d, %r8d
callq 0x7ecca
movq (%rsp), %rdi
cmpq %r15, %rdi
je 0x2b7a5
movq 0x10(%rsp), %rsi
incq %rsi
callq 0xa5a0
movl %r12d, 0x24(%rsp)
leaq 0x58(%rsp), %rdi
callq 0x80798
leaq 0x58(%rsp), %rdi
movq %rbx, %rsi
callq 0x822f4
leaq 0xa8(%rsp), %rax
movq 0x8(%rax), %r12
subq (%rax), %r12
je 0x2b8d1
movq %rbp, 0x48(%rsp)
movq %r13, 0x50(%rsp)
sarq $0x5, %r12
cmpq $0x1, %r12
adcq $0x0, %r12
xorl %ebx, %ebx
xorl %ebp, %ebp
movq %rbp, %r14
subq %rbx, %r14
testq %rbx, %rbx
je 0x2b863
leaq 0xa8(%rsp), %rdi
movq %rbp, %rsi
callq 0x31c7e
movq %rax, %r15
leaq 0xa8(%rsp), %rdi
movq %r14, %rsi
callq 0x31c7e
movq %rax, %r13
movq 0x10(%rax), %rax
movups (%r15), %xmm0
movups (%r13), %xmm1
movups %xmm0, (%r13)
movq 0x10(%r15), %rcx
movq %rcx, 0x10(%r13)
movaps %xmm1, (%rsp)
movq %rax, 0x10(%rsp)
xorps %xmm0, %xmm0
movups %xmm0, (%r15)
movq $0x0, 0x10(%r15)
movq %rsp, %rdi
callq 0x327d2
movb 0x18(%r15), %al
movb %al, 0x18(%r13)
leaq 0xa8(%rsp), %rdi
movq %r14, %rsi
callq 0x31c7e
movq %rax, %rdi
xorl %esi, %esi
callq 0x2dfb8
movq %rax, %rdi
leaq 0x608b4(%rip), %rsi     # 0x8c13b
callq 0xa160
cmpl $0x1, %eax
adcq $0x0, %rbx
incq %rbp
cmpq %rbp, %r12
jne 0x2b7f0
testq %rbx, %rbx
leaq 0x10(%rsp), %r15
movq 0x50(%rsp), %r13
movq 0x48(%rsp), %rbp
je 0x2b8d1
movq 0xb0(%rsp), %rdi
addq $-0x20, %rdi
movq %rdi, 0xb0(%rsp)
callq 0x327d2
decq %rbx
jne 0x2b8b3
leaq 0xa8(%rsp), %rdi
callq 0x32780
movq %rsp, %rsi
leaq 0xa8(%rsp), %rdi
callq 0x31bb4
leaq 0x58(%rsp), %rdi
movl 0x24(%rsp), %eax
movb %al, 0x29(%rdi)
callq 0x80798
leaq 0x38(%rsp), %r14
movq %r14, -0x10(%r14)
movq 0x168(%rbp), %rsi
movq 0x170(%rbp), %rdx
addq %rsi, %rdx
leaq 0x28(%rsp), %rdi
callq 0x2c212
leaq 0x619a6(%rip), %rsi     # 0x8d2d0
leaq 0x28(%rsp), %rdi
callq 0xaac0
movq (%r13), %rsi
movq 0x8(%r13), %rdx
leaq 0x28(%rsp), %rdi
callq 0xa190
movq %r15, (%rsp)
movq (%rax), %rdx
movq %rax, %rcx
addq $0x10, %rcx
cmpq %rcx, %rdx
je 0x2b967
movq %rdx, (%rsp)
movq (%rcx), %rdx
movq %rdx, 0x10(%rsp)
jmp 0x2b96e
movups (%rcx), %xmm0
movups %xmm0, (%r15)
movq 0x8(%rax), %rdx
movq %rsp, %rsi
movq %rdx, 0x8(%rsi)
movq %rcx, (%rax)
movq $0x0, 0x8(%rax)
movb $0x0, 0x10(%rax)
leaq 0x58(%rsp), %rdi
callq 0x4244a
movq (%rsp), %rdi
cmpq %r15, %rdi
je 0x2b9a8
movq 0x10(%rsp), %rsi
incq %rsi
callq 0xa5a0
movq 0x28(%rsp), %rdi
cmpq %r14, %rdi
je 0x2b9bf
movq 0x38(%rsp), %rsi
incq %rsi
callq 0xa5a0
leaq 0x841da(%rip), %rax     # 0xafba0
addq $0x10, %rax
leaq 0x88(%rsp), %r14
movq %rax, -0x30(%r14)
leaq 0xa8(%rsp), %rdi
callq 0x325ae
movq %r14, %rdi
callq 0x325f6
leaq 0x8354e(%rip), %rax     # 0xaef40
addq $0x10, %rax
movq %rax, -0x30(%r14)
movq -0x28(%r14), %rdi
leaq 0x70(%rsp), %rax
cmpq %rax, %rdi
je 0x2ba15
movq 0x70(%rsp), %rsi
incq %rsi
callq 0xa5a0
addq $0xc8, %rsp
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
retq
movq %rax, %rbx
movq (%rsp), %rdi
cmpq %r15, %rdi
je 0x2ba47
movq 0x10(%rsp), %rsi
incq %rsi
callq 0xa5a0
jmp 0x2ba47
jmp 0x2ba44
movq %rax, %rbx
movq 0x28(%rsp), %rdi
cmpq %r14, %rdi
je 0x2ba84
movq 0x38(%rsp), %rsi
incq %rsi
callq 0xa5a0
jmp 0x2ba84
jmp 0x2ba81
jmp 0x2ba64
movq %rax, %rbx
movq (%rsp), %rdi
cmpq %r15, %rdi
je 0x2ba8e
movq 0x10(%rsp), %rsi
incq %rsi
callq 0xa5a0
jmp 0x2ba8e
jmp 0x2ba81
movq %rax, %rbx
leaq 0x58(%rsp), %rdi
callq 0x2e98c
movq %rbx, %rdi
callq 0xaa10