// File: /workspace/github_cpp_makefile_star2_O3/readmapping[P]alfalfa/src/dp.cpp
// Function: dynProg::print_matrices(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char>> const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char>> const&, boundaries const&, bool)
void  dynProg::print_matrices(const string& ref, 
        const string& query, const boundaries& offset, bool gapMatrices )
{
        cout << "        ";
        for( int j = 0; j < L1; j++ )
        {
                cout << ref[ offset.refB+j ] << "   ";
        }
        cout << "\n  ";

        for( int i = 0; i <= L2; i++ )
        {
                if( i > 0 )
                {
                        cout << query[ offset.queryB+i-1 ] << " ";
                }
                for( int j = 0; j <= L1; j++ )
                {
                        cout.width( 3 );
                        cout << M[ i ][ j ] << " ";
                }
                cout << endl;
        }
        cout << endl;
        if(gapMatrices){
            cout << "        ";
            for( int j = 0; j < L1; j++ )
            {
                    cout << ref[ offset.refB+j ] << "   ";
            }
            cout << "\n  ";

            for( int i = 0; i <= L2; i++ )
            {
                    if( i > 0 )
                    {
                            cout << query[ offset.queryB+i-1 ] << " ";
                    }
                    for( int j = 0; j <= L1; j++ )
                    {
                            cout.width( 3 );
                            cout << LEFT[ i ][ j ] << " ";
                    }
                    cout << endl;
            }
            cout << endl;
            cout << "        ";
            for( int j = 0; j < L1; j++ )
            {
                    cout << ref[ offset.refB+j ] << "   ";
            }
            cout << "\n  ";

            for( int i = 0; i <= L2; i++ )
            {
                    if( i > 0 )
                    {
                            cout << query[ offset.queryB+i-1 ] << " ";
                    }
                    for( int j = 0; j <= L1; j++ )
                    {
                            cout.width( 3 );
                            cout << UP[ i ][ j ] << " ";
                    }
                    cout << endl;
            }
            cout << endl;
        }
        cout << "        ";
        for( int j = 0; j < L1; j++ )
        {
                cout << ref[ offset.refB+j ] << "   ";
        }
        cout << "\n  ";

        cout << endl;
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
subq $0x28, %rsp
movl %r8d, 0x1c(%rsp)
movq %rcx, %r12
movq %rdx, 0x10(%rsp)
movq %rsi, %rbx
movq %rdi, %r15
movq 0x375bc(%rip), %rdi     # 0x53fc0
leaq 0x27f54(%rip), %rsi     # 0x4495f
movl $0x8, %edx
callq 0x7340
cmpl $0x0, 0x20(%r15)
jle 0x1ca6a
xorl %r14d, %r14d
leaq 0x1(%rsp), %r13
leaq 0x27f39(%rip), %rbp     # 0x44964
movq (%rbx), %rax
addq (%r12), %rax
movb (%r14,%rax), %al
movb %al, 0x1(%rsp)
movl $0x1, %edx
movq 0x3757a(%rip), %rdi     # 0x53fc0
movq %r13, %rsi
callq 0x7340
movl $0x3, %edx
movq %rax, %rdi
movq %rbp, %rsi
callq 0x7340
incq %r14
movslq 0x20(%r15), %rax
cmpq %rax, %r14
jl 0x1ca2b
movq %rbx, 0x8(%rsp)
movq 0x3754a(%rip), %r13     # 0x53fc0
leaq 0x27eeb(%rip), %rsi     # 0x44968
movl $0x3, %edx
movq %r13, %rdi
callq 0x7340
cmpl $0x0, 0x24(%r15)
movq %r12, %rbx
js 0x1cb6f
xorl %r12d, %r12d
leaq 0x29a24(%rip), %rbp     # 0x464c6
testq %r12, %r12
je 0x1cae3
movslq 0x10(%rbx), %rax
movslq %r12d, %rcx
addq %rax, %rcx
movq 0x10(%rsp), %rax
movq (%rax), %rax
movb -0x1(%rax,%rcx), %al
movb %al, 0x2(%rsp)
movl $0x1, %edx
movq %r13, %rdi
leaq 0x2(%rsp), %rsi
callq 0x7340
movl $0x1, %edx
movq %rax, %rdi
movq %rbp, %rsi
callq 0x7340
cmpl $0x0, 0x20(%r15)
js 0x1cb32
movq $-0x1, %r14
movq (%r13), %rax
movq -0x18(%rax), %rax
movq $0x3, 0x10(%r13,%rax)
movq (%r15), %rax
movq (%rax,%r12,8), %rax
movl 0x4(%rax,%r14,4), %esi
movq %r13, %rdi
callq 0x75d0
movl $0x1, %edx
movq %rax, %rdi
movq %rbp, %rsi
callq 0x7340
movslq 0x20(%r15), %rax
incq %r14
cmpq %rax, %r14
jl 0x1caf1
movq (%r13), %rax
movq -0x18(%rax), %rdi
addq %r13, %rdi
movl $0xa, %esi
callq 0x72b0
movsbl %al, %esi
movq %r13, %rdi
callq 0x7040
movq %rax, %rdi
callq 0x71d0
leaq 0x1(%r12), %rax
movslq 0x24(%r15), %rcx
cmpq %rcx, %r12
movq %rax, %r12
jl 0x1caa2
movq %rbx, 0x20(%rsp)
movq (%r13), %rax
movq -0x18(%rax), %rdi
addq %r13, %rdi
movl $0xa, %esi
callq 0x72b0
movsbl %al, %esi
movq %r13, %rdi
callq 0x7040
movq %rax, %rdi
callq 0x71d0
cmpb $0x0, 0x1c(%rsp)
je 0x1cee1
movq 0x37412(%rip), %rdi     # 0x53fc0
leaq 0x27daa(%rip), %rsi     # 0x4495f
movl $0x8, %edx
callq 0x7340
cmpl $0x0, 0x20(%r15)
movq 0x8(%rsp), %rbx
movq 0x20(%rsp), %r12
jle 0x1cc1e
xorl %r14d, %r14d
leaq 0x3(%rsp), %r13
leaq 0x27d85(%rip), %rbp     # 0x44964
movq (%rbx), %rax
addq (%r12), %rax
movb (%r14,%rax), %al
movb %al, 0x3(%rsp)
movl $0x1, %edx
movq 0x373c6(%rip), %rdi     # 0x53fc0
movq %r13, %rsi
callq 0x7340
movl $0x3, %edx
movq %rax, %rdi
movq %rbp, %rsi
callq 0x7340
incq %r14
movslq 0x20(%r15), %rax
cmpq %rax, %r14
jl 0x1cbdf
movq 0x3739b(%rip), %r13     # 0x53fc0
leaq 0x27d3c(%rip), %rsi     # 0x44968
movl $0x3, %edx
movq %r13, %rdi
callq 0x7340
cmpl $0x0, 0x24(%r15)
movq %r12, %rbx
js 0x1cd1f
xorl %r12d, %r12d
leaq 0x29875(%rip), %rbp     # 0x464c6
testq %r12, %r12
je 0x1cc92
movslq 0x10(%rbx), %rax
movslq %r12d, %rcx
addq %rax, %rcx
movq 0x10(%rsp), %rax
movq (%rax), %rax
movb -0x1(%rax,%rcx), %al
movb %al, 0x4(%rsp)
movl $0x1, %edx
movq %r13, %rdi
leaq 0x4(%rsp), %rsi
callq 0x7340
movl $0x1, %edx
movq %rax, %rdi
movq %rbp, %rsi
callq 0x7340
cmpl $0x0, 0x20(%r15)
js 0x1cce2
movq $-0x1, %r14
movq (%r13), %rax
movq -0x18(%rax), %rax
movq $0x3, 0x10(%r13,%rax)
movq 0x10(%r15), %rax
movq (%rax,%r12,8), %rax
movl 0x4(%rax,%r14,4), %esi
movq %r13, %rdi
callq 0x75d0
movl $0x1, %edx
movq %rax, %rdi
movq %rbp, %rsi
callq 0x7340
movslq 0x20(%r15), %rax
incq %r14
cmpq %rax, %r14
jl 0x1cca0
movq (%r13), %rax
movq -0x18(%rax), %rdi
addq %r13, %rdi
movl $0xa, %esi
callq 0x72b0
movsbl %al, %esi
movq %r13, %rdi
callq 0x7040
movq %rax, %rdi
callq 0x71d0
leaq 0x1(%r12), %rax
movslq 0x24(%r15), %rcx
cmpq %rcx, %r12
movq %rax, %r12
jl 0x1cc51
movq (%r13), %rax
movq -0x18(%rax), %rdi
addq %r13, %rdi
movl $0xa, %esi
callq 0x72b0
movsbl %al, %esi
movq %r13, %rdi
callq 0x7040
movq %rax, %rdi
callq 0x71d0
leaq 0x27c11(%rip), %rsi     # 0x4495f
movl $0x8, %edx
movq %r13, %rdi
callq 0x7340
cmpl $0x0, 0x20(%r15)
movq %rbx, %r12
movq 0x8(%rsp), %rbx
jle 0x1cdb8
xorl %r14d, %r14d
leaq 0x5(%rsp), %r13
leaq 0x27beb(%rip), %rbp     # 0x44964
movq (%rbx), %rax
addq (%r12), %rax
movb (%r14,%rax), %al
movb %al, 0x5(%rsp)
movl $0x1, %edx
movq 0x3722c(%rip), %rdi     # 0x53fc0
movq %r13, %rsi
callq 0x7340
movl $0x3, %edx
movq %rax, %rdi
movq %rbp, %rsi
callq 0x7340
incq %r14
movslq 0x20(%r15), %rax
cmpq %rax, %r14
jl 0x1cd79
movq 0x37201(%rip), %r13     # 0x53fc0
leaq 0x27ba2(%rip), %rsi     # 0x44968
movl $0x3, %edx
movq %r13, %rdi
callq 0x7340
cmpl $0x0, 0x24(%r15)
js 0x1ceb9
movq %r12, %rbx
xorl %r12d, %r12d
leaq 0x296db(%rip), %rbp     # 0x464c6
testq %r12, %r12
je 0x1ce2c
movslq 0x10(%rbx), %rax
movslq %r12d, %rcx
addq %rax, %rcx
movq 0x10(%rsp), %rax
movq (%rax), %rax
movb -0x1(%rax,%rcx), %al
movb %al, 0x6(%rsp)
movl $0x1, %edx
movq %r13, %rdi
leaq 0x6(%rsp), %rsi
callq 0x7340
movl $0x1, %edx
movq %rax, %rdi
movq %rbp, %rsi
callq 0x7340
cmpl $0x0, 0x20(%r15)
js 0x1ce7c
movq $-0x1, %r14
movq (%r13), %rax
movq -0x18(%rax), %rax
movq $0x3, 0x10(%r13,%rax)
movq 0x8(%r15), %rax
movq (%rax,%r12,8), %rax
movl 0x4(%rax,%r14,4), %esi
movq %r13, %rdi
callq 0x75d0
movl $0x1, %edx
movq %rax, %rdi
movq %rbp, %rsi
callq 0x7340
movslq 0x20(%r15), %rax
incq %r14
cmpq %rax, %r14
jl 0x1ce3a
movq (%r13), %rax
movq -0x18(%rax), %rdi
addq %r13, %rdi
movl $0xa, %esi
callq 0x72b0
movsbl %al, %esi
movq %r13, %rdi
callq 0x7040
movq %rax, %rdi
callq 0x71d0
leaq 0x1(%r12), %rax
movslq 0x24(%r15), %rcx
cmpq %rcx, %r12
movq %rax, %r12
jl 0x1cdeb
movq (%r13), %rax
movq -0x18(%rax), %rdi
addq %r13, %rdi
movl $0xa, %esi
callq 0x72b0
movsbl %al, %esi
movq %r13, %rdi
callq 0x7040
movq %rax, %rdi
callq 0x71d0
movq 0x370d8(%rip), %rdi     # 0x53fc0
leaq 0x27a70(%rip), %rsi     # 0x4495f
movl $0x8, %edx
callq 0x7340
cmpl $0x0, 0x20(%r15)
movq 0x8(%rsp), %rbx
movq 0x20(%rsp), %r13
jle 0x1cf58
xorl %r14d, %r14d
leaq 0x7(%rsp), %rbp
leaq 0x27a4b(%rip), %r12     # 0x44964
movq (%rbx), %rax
addq (%r13), %rax
movb (%r14,%rax), %al
movb %al, 0x7(%rsp)
movl $0x1, %edx
movq 0x3708c(%rip), %rdi     # 0x53fc0
movq %rbp, %rsi
callq 0x7340
movl $0x3, %edx
movq %rax, %rdi
movq %r12, %rsi
callq 0x7340
incq %r14
movslq 0x20(%r15), %rax
cmpq %rax, %r14
jl 0x1cf19
leaq 0x27a09(%rip), %rsi     # 0x44968
movl $0x3, %edx
movq 0x37055(%rip), %rbx     # 0x53fc0
movq %rbx, %rdi
callq 0x7340
movq (%rbx), %rax
movq -0x18(%rax), %rdi
addq %rbx, %rdi
movl $0xa, %esi
callq 0x72b0
movsbl %al, %esi
movq %rbx, %rdi
callq 0x7040
movq %rax, %rdi
callq 0x71d0
addq $0x28, %rsp
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
retq
nop