// File: /workspace/github_cpp_makefile_star2_O1/millanek[P]evo/./evo_recombUtils.h
// Function: RecombRead::RecombRead(std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char>>, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char>>>>)
RecombRead(const std::vector<string> samRecVec) : usedLength(0) {
        
        flag = atoi(samRecVec[1].c_str());
        readStrand = assignStrandFromFlag();
        readName = samRecVec[0]; readPos = atoi(samRecVec[3].c_str());
        MQ = atoi(samRecVec[4].c_str()); CIGAR = samRecVec[5];
        readSeq = samRecVec[9]; readQual = samRecVec[10];
        
        generateCIGARvectors();
    }

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
subq $0x68, %rsp
movq %rsi, %rbx
movq %rdi, %r13
leaq 0x8(%rdi), %r12
leaq 0x18(%rdi), %rax
movq %rax, 0x20(%rsp)
movq %rax, 0x8(%rdi)
xorl %eax, %eax
movq %rax, 0x10(%rdi)
movb %al, 0x18(%rdi)
leaq 0x28(%rdi), %rcx
movq %rcx, 0x38(%rsp)
leaq 0x38(%rdi), %rcx
movq %rcx, 0x18(%rsp)
movq %rcx, 0x28(%rdi)
movq %rax, 0x30(%rdi)
movb %al, 0x38(%rdi)
leaq 0x50(%rdi), %rcx
movq %rcx, 0x30(%rsp)
leaq 0x60(%rdi), %rcx
movq %rcx, 0x10(%rsp)
movq %rcx, 0x50(%rdi)
movq %rax, 0x58(%rdi)
movb %al, 0x60(%rdi)
leaq 0x70(%rdi), %rcx
movq %rcx, 0x28(%rsp)
leaq 0x80(%rdi), %rcx
movq %rcx, 0x8(%rsp)
movq %rcx, 0x70(%rdi)
movq %rax, 0x78(%rdi)
movb %al, 0x80(%rdi)
leaq 0x98(%rdi), %rbp
leaq 0xa8(%rdi), %r15
movq %r15, 0x98(%rdi)
movq %rax, 0xa0(%rdi)
movb %al, 0xa8(%rdi)
xorps %xmm0, %xmm0
movups %xmm0, 0x108(%rdi)
movq %rax, 0x118(%rdi)
leaq 0x128(%rdi), %rcx
movl $0x0, 0x128(%rdi)
movq %rax, 0x130(%rdi)
movups %xmm0, 0xf4(%rdi)
movups %xmm0, 0xe8(%rdi)
movups %xmm0, 0xd8(%rdi)
movups %xmm0, 0xc8(%rdi)
movups %xmm0, 0xb8(%rdi)
movq %rcx, 0x138(%rdi)
movq %rcx, 0x140(%rdi)
movq %rax, 0x148(%rdi)
movq (%rsi), %rax
movq 0x20(%rax), %rdi
callq 0x86e0
movl %eax, (%r13)
leaq 0x48(%rsp), %rdi
movq %r13, %rsi
movq %r12, 0x40(%rsp)
callq 0xc5a84
leaq 0x48(%rsp), %r14
movq %r12, %rdi
movq %r14, %rsi
callq 0x8540
movq (%r14), %rdi
leaq 0x58(%rsp), %rax
cmpq %rax, %rdi
je 0xc31d4
movq 0x58(%rsp), %rsi
incq %rsi
callq 0x8480
movq (%rbx), %rsi
movq 0x38(%rsp), %rdi
callq 0x8270
movq (%rbx), %r14
movq 0x60(%r14), %rdi
callq 0x86e0
movl %eax, 0x48(%r13)
movq 0x80(%r14), %rdi
callq 0x86e0
movl %eax, 0x90(%r13)
addq $0xa0, %r14
movq %rbp, %rdi
movq %r14, %rsi
callq 0x8270
movl $0x120, %esi            # imm = 0x120
addq (%rbx), %rsi
movq 0x30(%rsp), %rdi
callq 0x8270
movl $0x140, %esi            # imm = 0x140
addq (%rbx), %rsi
movq 0x28(%rsp), %rdi
callq 0x8270
movq %r13, %rdi
callq 0xc5b46
addq $0x68, %rsp
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
retq
jmp 0xc3253
movq %rax, %r14
leaq 0x108(%r13), %rbx
leaq 0x120(%r13), %rdi
callq 0x67358
movq (%rbx), %rdi
testq %rdi, %rdi
je 0xc3280
movq 0x118(%r13), %rsi
subq %rdi, %rsi
callq 0x8480
movq 0xe8(%r13), %rdi
testq %rdi, %rdi
je 0xc329b
movq 0xf8(%r13), %rsi
subq %rdi, %rsi
callq 0x8480
leaq 0xb8(%r13), %rbx
movq 0xd0(%r13), %rdi
testq %rdi, %rdi
je 0xc32bd
movq 0xe0(%r13), %rsi
subq %rdi, %rsi
callq 0x8480
movq (%rbx), %rdi
testq %rdi, %rdi
je 0xc32d4
movq 0xc8(%r13), %rsi
subq %rdi, %rsi
callq 0x8480
movq (%rbp), %rdi
cmpq %r15, %rdi
je 0xc32e8
movq (%r15), %rsi
incq %rsi
callq 0x8480
movq 0x28(%rsp), %rax
movq (%rax), %rdi
cmpq 0x8(%rsp), %rdi
je 0xc3307
movq 0x8(%rsp), %rax
movq (%rax), %rsi
incq %rsi
callq 0x8480
movq 0x30(%rsp), %rax
movq (%rax), %rdi
cmpq 0x10(%rsp), %rdi
je 0xc3326
movq 0x10(%rsp), %rax
movq (%rax), %rsi
incq %rsi
callq 0x8480
movq 0x38(%rsp), %rax
movq (%rax), %rdi
cmpq 0x18(%rsp), %rdi
je 0xc3345
movq 0x18(%rsp), %rax
movq (%rax), %rsi
incq %rsi
callq 0x8480
movq 0x40(%rsp), %rax
movq (%rax), %rdi
cmpq 0x20(%rsp), %rdi
je 0xc3364
movq 0x20(%rsp), %rax
movq (%rax), %rsi
incq %rsi
callq 0x8480
movq %r14, %rdi
callq 0x8840