// File: auton1[P]viterbi/vcf_entry.cpp
// Function: vcf_entry::vcf_entry(header&, std::vector<bool, std::allocator<bool>>&)
vcf_entry::vcf_entry(header &meta_data, vector<bool> &include_individual)
{
	N_indv = meta_data.N_indv;
	include_indv = include_individual;
	include_genotype = vector<bool>(N_indv, true);
	basic_parsed = false; fully_parsed = false;
	parsed_ALT = false; parsed_FILTER = false;
	parsed_INFO = false; parsed_FORMAT = false;
	CHROM = ""; POS = -1; REF = ""; QUAL = -1;
	passed_filters = true; parsed_FORMAT_binary = false;
	N_INFO_removed = 0; N_FORMAT_removed = 0;
	parsed_GT = vector<bool>(N_indv, false); parsed_GQ = vector<bool>(N_indv, false);
	parsed_DP = vector<bool>(N_indv, false); parsed_FT = vector<bool>(N_indv, false);
	GT_idx = -1; GQ_idx = -1; DP_idx = -1; FT_idx = -1;
	FORMAT_positions.resize(N_indv); FORMAT_types.resize(N_indv); FORMAT_sizes.resize(N_indv); FORMAT_skip.resize(N_indv); FORMAT_keys.resize(N_indv);
	convert_line.clear();
	data_stream.str("");
	entry_header = meta_data;
}

// Assembly:
subq $0x208, %rsp            # imm = 0x208
movq %rdi, 0x200(%rsp)
movq %rsi, 0x1f8(%rsp)
movq %rdx, 0x1f0(%rsp)
movq 0x200(%rsp), %rdi
movq %rdi, 0xc0(%rsp)
callq 0x391a0
movq 0xc0(%rsp), %rdi
leaq 0x54e45(%rip), %rax     # 0x92cd8
movq %rax, (%rdi)
addq $0x6b8, %rdi            # imm = 0x6B8
movq %rdi, 0x90(%rsp)
callq 0x67e0
movq 0xc0(%rsp), %rdi
addq $0x6d8, %rdi            # imm = 0x6D8
movq %rdi, 0x98(%rsp)
callq 0x67e0
movq 0xc0(%rsp), %rdi
addq $0x6f8, %rdi            # imm = 0x6F8
movq %rdi, 0xa0(%rsp)
callq 0x67e0
movq 0xc0(%rsp), %rdi
addq $0x718, %rdi            # imm = 0x718
movq %rdi, 0xa8(%rsp)
callq 0x67e0
movq 0xc0(%rsp), %rdi
addq $0x738, %rdi            # imm = 0x738
movq %rdi, 0xb0(%rsp)
callq 0x67e0
movq 0xc0(%rsp), %rdi
addq $0x758, %rdi            # imm = 0x758
movq %rdi, 0xb8(%rsp)
callq 0x10260
movq 0xc0(%rsp), %rdi
movq 0x1f8(%rsp), %rax
movl 0x58(%rax), %eax
movl %eax, 0x8(%rdi)
movq 0x1f0(%rsp), %rsi
addq $0x1f0, %rdi            # imm = 0x1F0
callq 0x1ec40
jmp 0x3df62
movq 0xc0(%rsp), %rax
movl 0x8(%rax), %eax
movq %rax, 0x80(%rsp)
movb $0x1, 0x1b7(%rsp)
leaq 0x1b6(%rsp), %rdi
movq %rdi, 0x88(%rsp)
callq 0x20810
movq 0x80(%rsp), %rsi
movq 0x88(%rsp), %rcx
leaq 0x1b8(%rsp), %rdi
leaq 0x1b7(%rsp), %rdx
callq 0x20820
jmp 0x3dfb9
movq 0xc0(%rsp), %rdi
addq $0x218, %rdi            # imm = 0x218
leaq 0x1b8(%rsp), %rsi
movq %rsi, 0x78(%rsp)
callq 0x208a0
movq 0x78(%rsp), %rdi
callq 0x11300
leaq 0x1b6(%rsp), %rdi
callq 0x1e6a0
movq 0xc0(%rsp), %rdi
movb $0x0, 0x3d8(%rdi)
movb $0x0, 0x3d9(%rdi)
movb $0x0, 0x3da(%rdi)
movb $0x0, 0x3db(%rdi)
movb $0x0, 0x3dc(%rdi)
movb $0x0, 0x3dd(%rdi)
addq $0x3e0, %rdi            # imm = 0x3E0
leaq 0x37cf8(%rip), %rsi     # 0x75d29
callq 0x67b0
jmp 0x3e038
movq 0xc0(%rsp), %rdi
movl $0xffffffff, 0x400(%rdi) # imm = 0xFFFFFFFF
addq $0x428, %rdi            # imm = 0x428
leaq 0x37cd1(%rip), %rsi     # 0x75d29
callq 0x67b0
jmp 0x3e05f
movq 0xc0(%rsp), %rax
movabsq $-0x4010000000000000, %rcx # imm = 0xBFF0000000000000
movq %rcx, 0x460(%rax)
movb $0x1, 0xc(%rax)
movb $0x0, 0x3de(%rax)
movl $0x0, 0x4c8(%rax)
movl $0x0, 0x4cc(%rax)
movl 0x8(%rax), %eax
movq %rax, 0x68(%rsp)
movb $0x0, 0x187(%rsp)
leaq 0x186(%rsp), %rdi
movq %rdi, 0x70(%rsp)
callq 0x20810
movq 0x68(%rsp), %rsi
movq 0x70(%rsp), %rcx
leaq 0x188(%rsp), %rdi
leaq 0x187(%rsp), %rdx
callq 0x20820
jmp 0x3e0da
movq 0xc0(%rsp), %rdi
addq $0x560, %rdi            # imm = 0x560
leaq 0x188(%rsp), %rsi
movq %rsi, 0x50(%rsp)
callq 0x208a0
movq 0x50(%rsp), %rdi
callq 0x11300
leaq 0x186(%rsp), %rdi
callq 0x1e6a0
movq 0xc0(%rsp), %rax
movl 0x8(%rax), %eax
movq %rax, 0x58(%rsp)
movb $0x0, 0x157(%rsp)
leaq 0x156(%rsp), %rdi
movq %rdi, 0x60(%rsp)
callq 0x20810
movq 0x58(%rsp), %rsi
movq 0x60(%rsp), %rcx
leaq 0x158(%rsp), %rdi
leaq 0x157(%rsp), %rdx
callq 0x20820
jmp 0x3e15d
movq 0xc0(%rsp), %rdi
addq $0x588, %rdi            # imm = 0x588
leaq 0x158(%rsp), %rsi
movq %rsi, 0x38(%rsp)
callq 0x208a0
movq 0x38(%rsp), %rdi
callq 0x11300
leaq 0x156(%rsp), %rdi
callq 0x1e6a0
movq 0xc0(%rsp), %rax
movl 0x8(%rax), %eax
movq %rax, 0x40(%rsp)
movb $0x0, 0x127(%rsp)
leaq 0x126(%rsp), %rdi
movq %rdi, 0x48(%rsp)
callq 0x20810
movq 0x40(%rsp), %rsi
movq 0x48(%rsp), %rcx
leaq 0x128(%rsp), %rdi
leaq 0x127(%rsp), %rdx
callq 0x20820
jmp 0x3e1e0
movq 0xc0(%rsp), %rdi
addq $0x5b0, %rdi            # imm = 0x5B0
leaq 0x128(%rsp), %rsi
movq %rsi, 0x20(%rsp)
callq 0x208a0
movq 0x20(%rsp), %rdi
callq 0x11300
leaq 0x126(%rsp), %rdi
callq 0x1e6a0
movq 0xc0(%rsp), %rax
movl 0x8(%rax), %eax
movq %rax, 0x28(%rsp)
movb $0x0, 0xf7(%rsp)
leaq 0xf6(%rsp), %rdi
movq %rdi, 0x30(%rsp)
callq 0x20810
movq 0x28(%rsp), %rsi
movq 0x30(%rsp), %rcx
leaq 0xf8(%rsp), %rdi
leaq 0xf7(%rsp), %rdx
callq 0x20820
jmp 0x3e263
movq 0xc0(%rsp), %rdi
addq $0x5d8, %rdi            # imm = 0x5D8
leaq 0xf8(%rsp), %rsi
movq %rsi, 0x18(%rsp)
callq 0x208a0
movq 0x18(%rsp), %rdi
callq 0x11300
leaq 0xf6(%rsp), %rdi
callq 0x1e6a0
movq 0xc0(%rsp), %rax
movl $0xffffffff, 0x630(%rax) # imm = 0xFFFFFFFF
movl $0xffffffff, 0x634(%rax) # imm = 0xFFFFFFFF
movl $0xffffffff, 0x638(%rax) # imm = 0xFFFFFFFF
movl $0xffffffff, 0x63c(%rax) # imm = 0xFFFFFFFF
movq %rax, %rdi
addq $0x640, %rdi            # imm = 0x640
movl 0x8(%rax), %eax
movl %eax, %esi
callq 0x393f0
jmp 0x3e2e1
movq 0xc0(%rsp), %rax
movq %rax, %rdi
addq $0x658, %rdi            # imm = 0x658
movl 0x8(%rax), %eax
movl %eax, %esi
callq 0x393f0
jmp 0x3e2ff
movq 0xc0(%rsp), %rax
movq %rax, %rdi
addq $0x670, %rdi            # imm = 0x670
movl 0x8(%rax), %eax
movl %eax, %esi
callq 0x393f0
jmp 0x3e31d
movq 0xc0(%rsp), %rax
movq %rax, %rdi
addq $0x688, %rdi            # imm = 0x688
movl 0x8(%rax), %eax
movl %eax, %esi
callq 0x393f0
jmp 0x3e33b
movq 0xc0(%rsp), %rax
movq %rax, %rdi
addq $0x6a0, %rdi            # imm = 0x6A0
movl 0x8(%rax), %eax
movl %eax, %esi
callq 0x393f0
jmp 0x3e359
leaq 0x558a0(%rip), %rdi     # 0x93c00
callq 0x6770
movq 0xc0(%rsp), %rax
addq $0x240, %rax            # imm = 0x240
movq %rax, 0x8(%rsp)
leaq 0xcf(%rsp), %rdi
movq %rdi, 0x10(%rsp)
callq 0x69f0
movq 0x10(%rsp), %rdx
leaq 0x37993(%rip), %rsi     # 0x75d29
leaq 0xd0(%rsp), %rdi
callq 0x67c0
jmp 0x3e3a5
movq 0x8(%rsp), %rdi
leaq 0xd0(%rsp), %rsi
callq 0x6630
jmp 0x3e3b9
leaq 0xd0(%rsp), %rdi
callq 0x6b50
leaq 0xcf(%rsp), %rdi
callq 0x65f0
movq 0xc0(%rsp), %rdi
movq 0x1f8(%rsp), %rsi
addq $0x10, %rdi
callq 0x205e0
jmp 0x3e3ee
addq $0x208, %rsp            # imm = 0x208
retq
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x1e8(%rsp)
movl %eax, 0x1e4(%rsp)
jmp 0x3e50b
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x1e8(%rsp)
movl %eax, 0x1e4(%rsp)
leaq 0x1b6(%rsp), %rdi
callq 0x1e6a0
jmp 0x3e50b
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x1e8(%rsp)
movl %eax, 0x1e4(%rsp)
leaq 0x186(%rsp), %rdi
callq 0x1e6a0
jmp 0x3e50b
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x1e8(%rsp)
movl %eax, 0x1e4(%rsp)
leaq 0x156(%rsp), %rdi
callq 0x1e6a0
jmp 0x3e50b
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x1e8(%rsp)
movl %eax, 0x1e4(%rsp)
leaq 0x126(%rsp), %rdi
callq 0x1e6a0
jmp 0x3e50b
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x1e8(%rsp)
movl %eax, 0x1e4(%rsp)
leaq 0xf6(%rsp), %rdi
callq 0x1e6a0
jmp 0x3e50b
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x1e8(%rsp)
movl %eax, 0x1e4(%rsp)
jmp 0x3e4fe
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x1e8(%rsp)
movl %eax, 0x1e4(%rsp)
leaq 0xd0(%rsp), %rdi
callq 0x6b50
leaq 0xcf(%rsp), %rdi
callq 0x65f0
movq 0xb8(%rsp), %rdi
callq 0x10cc0
movq 0xb0(%rsp), %rdi
callq 0x6b50
movq 0xa8(%rsp), %rdi
callq 0x6b50
movq 0xa0(%rsp), %rdi
callq 0x6b50
movq 0x98(%rsp), %rdi
callq 0x6b50
movq 0x90(%rsp), %rdi
callq 0x6b50
movq 0xc0(%rsp), %rdi
callq 0x39b90
movq 0x1e8(%rsp), %rdi
callq 0x69e0
nopw %cs:(%rax,%rax)