// File: /workspace/github_c_makefile_star2_O0/genometools[P]genometools/src/tools/gt_encseq2spm.c
// Function: gt_encseq2spm_option_parser_new
static GtOptionParser* gt_encseq2spm_option_parser_new(void *tool_arguments)
{
  GtEncseq2spmArguments *arguments = tool_arguments;
  GtOptionParser *op;
  GtOption *option, *optionparts, *optionmemlimit;

  gt_assert(arguments);

  /* init */
  op = gt_option_parser_new("[option ...] [file]",
                            "Compute suffix prefix matches "
                            "from encoded sequence.");

  /* -l */
  option = gt_option_new_uint_min("l", "specify the minimum length",
                                  &arguments->minmatchlength, 0, 1U);
  gt_option_parser_add_option(op, option);
  gt_option_is_mandatory(option);

  /* -parts */
  optionparts = gt_option_new_uint("parts", "specify the number of parts",
                                  &arguments->numofparts, 0U);
  gt_option_parser_add_option(op, optionparts);

  /* -memlimit */
  optionmemlimit = gt_option_new_string("memlimit",
                       "specify maximal amount of memory to be used during "
                       "index construction (in bytes, the keywords 'MB' "
                       "and 'GB' are allowed)",
                       arguments->memlimitarg, NULL);
  gt_option_parser_add_option(op, optionmemlimit);
  gt_option_exclude(optionmemlimit, optionparts);
  arguments->refoptionmemlimit = gt_option_ref(optionmemlimit);

  /* -checksuftab */
  option = gt_option_new_bool("checksuftab", "check the suffix table",
                             &arguments->checksuftab, false);
  gt_option_parser_add_option(op, option);
  gt_option_is_development_option(option);

  /* -singlestrand */
  option = gt_option_new_bool("singlestrand", "use only the forward strand "
                              "of the sequence",
                              &arguments->singlestrand, false);
  gt_option_parser_add_option(op, option);

  /* -spm */
  option = gt_option_new_string("spm", "specify output for spms",
                                arguments->spmspec, NULL);
  gt_option_parser_add_option(op, option);

  /* -ii */
  option = gt_option_new_string("ii", "specify the input sequence",
                                arguments->encseqinput, NULL);
  gt_option_parser_add_option(op, option);
  gt_option_is_mandatory(option);

  /* -onlyaccum */
  option = gt_option_new_bool("onlyaccum", "only accumulate codes",
                             &arguments->onlyaccum, false);
  gt_option_parser_add_option(op, option);
  gt_option_is_development_option(option);

  /* -onlyallfirstcodes */
  option = gt_option_new_bool("onlyallfirstcodes", "only determines allcodes",
                              &arguments->onlyallfirstcodes, false);
  gt_option_parser_add_option(op, option);
  gt_option_is_development_option(option);

  /* -addbscachedepth */
  option = gt_option_new_uint("addbscachedepth", "only determines allcodes",
                              &arguments->addbscache_depth, 5U);
  gt_option_parser_add_option(op, option);
  gt_option_is_development_option(option);

  /* -phase2extra */
  option = gt_option_new_string("phase2extra",
                       "specify  amount of additional space required for "
                       "the second phase of the computation involving the "
                       "processing of the intervals (in bytes, "
                       "the keywords 'MB' and 'GB' are allowed)",
                       arguments->phase2extraarg, NULL);
  gt_option_parser_add_option(op, option);
  arguments->refoptionphase2extra = gt_option_ref(option);
  gt_option_is_development_option(option);

  /* -radixlarge */
  option = gt_option_new_bool("radixlarge", "use large tables for radixsort",
                              &arguments->radixlarge, false);
  gt_option_parser_add_option(op, option);
  gt_option_is_development_option(option);

  /* -radixparts */
  option = gt_option_new_uint("radixparts", "specify the number of parts "
                              "for radixsort",
                              &arguments->radixparts, 1U);
  gt_option_parser_add_option(op, option);
  gt_option_is_development_option(option);

  /* -singlescan */
  option = gt_option_new_uint("singlescan", "run a single scan: 1=fast; "
                              "2=fast with check; 3=fast with output; "
                              "4=sfx-mapped4-version",
                              &arguments->singlescan, 0);
  gt_option_parser_add_option(op, option);
  gt_option_is_development_option(option);

  /* -forcek */
  option = gt_option_new_uint("forcek", "specify the value of k",
                              &arguments->forcek, 0);
  gt_option_is_development_option(option);
  gt_option_parser_add_option(op, option);

  option = gt_option_new_verbose(&arguments->verbose);
  gt_option_parser_add_option(op, option);

  return op;
}

// Assembly:
subq $0x38, %rsp
movq %rdi, 0x30(%rsp)
movq 0x30(%rsp), %rax
movq %rax, 0x28(%rsp)
cmpq $0x0, 0x28(%rsp)
jne 0x2ce33
movq 0x60f19e(%rip), %rax    # 0x63bfa0
movq (%rax), %rdi
leaq 0x4e9207(%rip), %rsi    # 0x516013
leaq 0x54dd4c(%rip), %rdx    # 0x57ab5f
leaq 0x4ee8c0(%rip), %rcx    # 0x51b6da
leaq 0x4ee89f(%rip), %r8     # 0x51b6c0
movl $0x62, %r9d
movb $0x0, %al
callq 0x199f0
callq 0x19370
jmp 0x2ce35
leaq 0x4ee8be(%rip), %rdi    # 0x51b6fa
leaq 0x4ee8cb(%rip), %rsi    # 0x51b70e
callq 0xf1420
movq %rax, 0x20(%rsp)
movq 0x28(%rsp), %rdx
addq $0x8, %rdx
leaq 0x52d4ff(%rip), %rdi    # 0x55a35c
leaq 0x4ee8df(%rip), %rsi    # 0x51b743
xorl %ecx, %ecx
movl $0x1, %r8d
callq 0xf6510
movq %rax, 0x18(%rsp)
movq 0x20(%rsp), %rdi
movq 0x18(%rsp), %rsi
callq 0xf1600
movq 0x18(%rsp), %rdi
callq 0xf6ca0
movq 0x28(%rsp), %rdx
addq $0xc, %rdx
leaq 0x4fac20(%rip), %rdi    # 0x527abf
leaq 0x4ee8b8(%rip), %rsi    # 0x51b75e
xorl %ecx, %ecx
callq 0xf64b0
movq %rax, 0x10(%rsp)
movq 0x20(%rsp), %rdi
movq 0x10(%rsp), %rsi
callq 0xf1600
movq 0x28(%rsp), %rax
movq 0x40(%rax), %rdx
leaq 0x58d5b7(%rip), %rdi    # 0x5ba488
leaq 0x4ee8a2(%rip), %rsi    # 0x51b77a
xorl %eax, %eax
movl %eax, %ecx
callq 0xf69f0
movq %rax, 0x8(%rsp)
movq 0x20(%rsp), %rdi
movq 0x8(%rsp), %rsi
callq 0xf1600
movq 0x8(%rsp), %rdi
movq 0x10(%rsp), %rsi
callq 0xf7320
movq 0x8(%rsp), %rdi
callq 0xf13c0
movq %rax, %rcx
movq 0x28(%rsp), %rax
movq %rcx, 0x50(%rax)
movq 0x28(%rsp), %rdx
leaq 0x4ee8cd(%rip), %rdi    # 0x51b7f3
leaq 0x4ee8d2(%rip), %rsi    # 0x51b7ff
xorl %ecx, %ecx
callq 0xf5f20
movq %rax, 0x18(%rsp)
movq 0x20(%rsp), %rdi
movq 0x18(%rsp), %rsi
callq 0xf1600
movq 0x18(%rsp), %rdi
callq 0xf7040
movq 0x28(%rsp), %rdx
addq $0x1, %rdx
leaq 0x4ee8b4(%rip), %rdi    # 0x51b816
leaq 0x4ee8ba(%rip), %rsi    # 0x51b823
xorl %ecx, %ecx
callq 0xf5f20
movq %rax, 0x18(%rsp)
movq 0x20(%rsp), %rdi
movq 0x18(%rsp), %rsi
callq 0xf1600
movq 0x28(%rsp), %rax
movq 0x38(%rax), %rdx
leaq 0x4eeb3c(%rip), %rdi    # 0x51bad0
leaq 0x4ee8b4(%rip), %rsi    # 0x51b84f
xorl %eax, %eax
movl %eax, %ecx
callq 0xf69f0
movq %rax, 0x18(%rsp)
movq 0x20(%rsp), %rdi
movq 0x18(%rsp), %rsi
callq 0xf1600
movq 0x28(%rsp), %rax
movq 0x30(%rax), %rdx
leaq 0x559305(%rip), %rdi    # 0x5862cd
leaq 0x4ee898(%rip), %rsi    # 0x51b867
xorl %eax, %eax
movl %eax, %ecx
callq 0xf69f0
movq %rax, 0x18(%rsp)
movq 0x20(%rsp), %rdi
movq 0x18(%rsp), %rsi
callq 0xf1600
movq 0x18(%rsp), %rdi
callq 0xf6ca0
movq 0x28(%rsp), %rdx
addq $0x4, %rdx
leaq 0x4ee87c(%rip), %rdi    # 0x51b882
leaq 0x4ee87f(%rip), %rsi    # 0x51b88c
xorl %ecx, %ecx
callq 0xf5f20
movq %rax, 0x18(%rsp)
movq 0x20(%rsp), %rdi
movq 0x18(%rsp), %rsi
callq 0xf1600
movq 0x18(%rsp), %rdi
callq 0xf7040
movq 0x28(%rsp), %rdx
addq $0x5, %rdx
leaq 0x4ee860(%rip), %rdi    # 0x51b8a2
leaq 0x4ee86b(%rip), %rsi    # 0x51b8b4
xorl %ecx, %ecx
callq 0xf5f20
movq %rax, 0x18(%rsp)
movq 0x20(%rsp), %rdi
movq 0x18(%rsp), %rsi
callq 0xf1600
movq 0x18(%rsp), %rdi
callq 0xf7040
movq 0x28(%rsp), %rdx
addq $0x18, %rdx
leaq 0x4ee84f(%rip), %rdi    # 0x51b8cd
leaq 0x4ee82f(%rip), %rsi    # 0x51b8b4
movl $0x5, %ecx
callq 0xf64b0
movq %rax, 0x18(%rsp)
movq 0x20(%rsp), %rdi
movq 0x18(%rsp), %rsi
callq 0xf1600
movq 0x18(%rsp), %rdi
callq 0xf7040
movq 0x28(%rsp), %rax
movq 0x48(%rax), %rdx
leaq 0x4ee820(%rip), %rdi    # 0x51b8dd
leaq 0x4ee825(%rip), %rsi    # 0x51b8e9
xorl %eax, %eax
movl %eax, %ecx
callq 0xf69f0
movq %rax, 0x18(%rsp)
movq 0x20(%rsp), %rdi
movq 0x18(%rsp), %rsi
callq 0xf1600
movq 0x18(%rsp), %rdi
callq 0xf13c0
movq %rax, %rcx
movq 0x28(%rsp), %rax
movq %rcx, 0x58(%rax)
movq 0x18(%rsp), %rdi
callq 0xf7040
movq 0x28(%rsp), %rdx
addq $0x6, %rdx
leaq 0x4ee88a(%rip), %rdi    # 0x51b99b
leaq 0x4ee88e(%rip), %rsi    # 0x51b9a6
xorl %ecx, %ecx
callq 0xf5f20
movq %rax, 0x18(%rsp)
movq 0x20(%rsp), %rdi
movq 0x18(%rsp), %rsi
callq 0xf1600
movq 0x18(%rsp), %rdi
callq 0xf7040
movq 0x28(%rsp), %rdx
addq $0x10, %rdx
leaq 0x4ee878(%rip), %rdi    # 0x51b9c5
leaq 0x4ee87c(%rip), %rsi    # 0x51b9d0
movl $0x1, %ecx
callq 0xf64b0
movq %rax, 0x18(%rsp)
movq 0x20(%rsp), %rdi
movq 0x18(%rsp), %rsi
callq 0xf1600
movq 0x18(%rsp), %rdi
callq 0xf7040
movq 0x28(%rsp), %rdx
addq $0x14, %rdx
leaq 0x4ee86e(%rip), %rdi    # 0x51b9fa
leaq 0x4ee872(%rip), %rsi    # 0x51ba05
xorl %ecx, %ecx
callq 0xf64b0
movq %rax, 0x18(%rsp)
movq 0x20(%rsp), %rdi
movq 0x18(%rsp), %rsi
callq 0xf1600
movq 0x18(%rsp), %rdi
callq 0xf7040
movq 0x28(%rsp), %rdx
addq $0x1c, %rdx
leaq 0x4ee895(%rip), %rdi    # 0x51ba5d
leaq 0x4ee895(%rip), %rsi    # 0x51ba64
xorl %ecx, %ecx
callq 0xf64b0
movq %rax, 0x18(%rsp)
movq 0x18(%rsp), %rdi
callq 0xf7040
movq 0x20(%rsp), %rdi
movq 0x18(%rsp), %rsi
callq 0xf1600
movq 0x28(%rsp), %rdi
addq $0x2, %rdi
callq 0xf5f90
movq %rax, 0x18(%rsp)
movq 0x20(%rsp), %rdi
movq 0x18(%rsp), %rsi
callq 0xf1600
movq 0x20(%rsp), %rax
addq $0x38, %rsp
retq