LLM4Binary/decompile-bench-makefile huggingface dataset:
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/core/xzlib.c
// Function: gt_xgzclose
void gt_xgzclose(gzFile file)
{
  const char *msg;
  int errnum;
  if (gzclose(file)) {
    msg = gzerror(file, &errnum);
    if (errnum == Z_ERRNO) { /* error in file system */
      perror("cannot close compressed file");
      exit(EXIT_FAILURE);
    }
    else { /* error in zlib */
      fprintf(stderr, "cannot close compressed file: %s\n", msg);
      exit(EXIT_FAILURE);
    }
  }
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
movq %rdi, %rbx
callq 0x7a054
testl %eax, %eax
jne 0x62934
addq $0x8, %rsp
popq %rbx
popq %r14
retq
leaq 0x4(%rsp), %r14
movq %rbx, %rdi
movq %r14, %rsi
callq 0x7a6ac
cmpl $-0x1, (%r14)
jne 0x62958
leaq 0x7a64c(%rip), %rdi     # 0xdcf9d
callq 0xb550
jmp 0x62973
movq 0xcb659(%rip), %rcx     # 0x12dfb8
movq (%rcx), %rdi
leaq 0x7a651(%rip), %rsi     # 0xdcfba
movq %rax, %rdx
xorl %eax, %eax
callq 0xb8c0
pushq $0x1
popq %rdi
callq 0xb7b0
nop
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/add_ids_stream.c
// Function: gt_add_ids_stream_class
const GtNodeStreamClass* gt_add_ids_stream_class(void)
{
  static const GtNodeStreamClass *nsc = NULL;
  gt_class_alloc_lock_enter();
  if (!nsc) {
    nsc = gt_node_stream_class_new(sizeof (GtAddIDsStream),
                                   add_ids_stream_free,
                                   add_ids_stream_next);
  }
  gt_class_alloc_lock_leave();
  return nsc;
}

// Assembly:
pushq %rax
callq 0x4f21f
cmpq $0x0, 0xcd286(%rip)     # 0x12fc10
jne 0x629a9
leaq 0x24(%rip), %rsi        # 0x629b7
leaq 0x47(%rip), %rdx        # 0x629e1
pushq $0x28
popq %rdi
callq 0x25a78
movq %rax, 0xcd267(%rip)     # 0x12fc10
callq 0x4f266
movq 0xcd25b(%rip), %rax     # 0x12fc10
popq %rcx
retq
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/add_ids_stream.c
// Function: gt_add_ids_stream_new
GtNodeStream* gt_add_ids_stream_new(GtNodeStream *in_stream)
{
  GtAddIDsStream *add_ids_stream;
  GtNodeStream *ns;
  gt_assert(in_stream);
  ns = gt_node_stream_create(gt_add_ids_stream_class(), false);
  add_ids_stream = gt_add_ids_stream_cast(ns);
  add_ids_stream->in_stream = gt_node_stream_ref(in_stream);
  add_ids_stream->add_ids_visitor =
    gt_add_ids_visitor_new(gt_node_stream_is_sorted(in_stream));
  add_ids_stream->add_ids = true;
  return ns;
}

// Assembly:
pushq %r15
pushq %r14
pushq %rbx
testq %rdi, %rdi
je 0x62ba5
movq %rdi, %rbx
callq 0x6297c
movq %rax, %rdi
xorl %esi, %esi
callq 0x25adf
movq %rax, %r14
callq 0x6297c
movq %rax, %rdi
movq %r14, %rsi
callq 0x25ec1
movq %rax, %r15
movq %rbx, %rdi
callq 0x25b74
movq %rax, 0x10(%r15)
movq %rbx, %rdi
callq 0x25e7d
movzbl %al, %edi
callq 0x63231
movq %rax, 0x18(%r15)
movb $0x1, 0x20(%r15)
movq %r14, %rax
popq %rbx
popq %r14
popq %r15
retq
movq 0xcb40c(%rip), %rax     # 0x12dfb8
movq (%rax), %rdi
leaq 0x674b0(%rip), %rsi     # 0xca066
leaq 0x701d7(%rip), %rdx     # 0xd2d94
leaq 0x7a418(%rip), %rcx     # 0xdcfdc
leaq 0x7a427(%rip), %r8      # 0xdcff2
pushq $0x75
popq %r9
xorl %eax, %eax
callq 0xb8c0
callq 0xb300
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/add_ids_visitor.c
// Function: gt_add_ids_visitor_class
const GtNodeVisitorClass* gt_add_ids_visitor_class()
{
  static GtNodeVisitorClass *nvc = NULL;
  if (!nvc) {
    nvc = gt_node_visitor_class_new(sizeof (GtAddIDsVisitor),
                                    add_ids_visitor_free,
                                    add_ids_visitor_comment_node,
                                    add_ids_visitor_feature_node,
                                    add_ids_visitor_region_node,
                                    add_ids_visitor_sequence_node,
                                    add_ids_visitor_eof_node);
    gt_node_visitor_class_set_meta_node_func(nvc, add_ids_visitor_meta_node);
  }
  return nvc;
}

// Assembly:
movq 0xcd019(%rip), %rax     # 0x12fc18
testq %rax, %rax
je 0x62c05
retq
pushq %rax
leaq 0x528(%rip), %rax       # 0x63135
movq %rax, (%rsp)
leaq 0x46(%rip), %rsi        # 0x62c5e
leaq 0x72(%rip), %rdx        # 0x62c91
leaq 0xe2(%rip), %rcx        # 0x62d08
leaq 0x380(%rip), %r8        # 0x62fad
leaq 0x47e(%rip), %r9        # 0x630b2
pushq $0x30
popq %rdi
callq 0x25f10
movq %rax, 0xccfd5(%rip)     # 0x12fc18
leaq 0x56e(%rip), %rsi       # 0x631b8
movq %rax, %rdi
callq 0x25f9f
movq 0xccfbf(%rip), %rax     # 0x12fc18
addq $0x8, %rsp
retq
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/add_ids_visitor.c
// Function: add_ids_visitor_free
static void add_ids_visitor_free(GtNodeVisitor *nv)
{
  GtAddIDsVisitor *add_ids_visitor = add_ids_visitor_cast(nv);
  gt_hashmap_delete(add_ids_visitor->undefined_sequence_regions);
  gt_cstr_table_delete(add_ids_visitor->defined_seqids);
  gt_queue_delete(add_ids_visitor->node_buffer);
}

// Assembly:
pushq %rbx
movq %rdi, %rbx
callq 0x62bf8
movq %rax, %rdi
movq %rbx, %rsi
callq 0x2603e
movq %rax, %rbx
movq 0x20(%rax), %rdi
callq 0x563a7
movq 0x18(%rbx), %rdi
callq 0x5055b
movq 0x10(%rbx), %rdi
popq %rbx
jmp 0x5b761
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/add_ids_visitor.c
// Function: add_ids_visitor_comment_node
static int add_ids_visitor_comment_node(GtNodeVisitor *nv, GtCommentNode *c,
                                        GT_UNUSED GtError *err)
{
  GtAddIDsVisitor *add_ids_visitor;
  gt_error_check(err);
  add_ids_visitor = add_ids_visitor_cast(nv);
  gt_queue_add(add_ids_visitor->node_buffer, c);
  return 0;
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
movq %rsi, %rbx
movq %rdi, %r14
testq %rdx, %rdx
je 0x62cac
movq %rdx, %rdi
callq 0xc103
testb %al, %al
jne 0x62cd2
callq 0x62bf8
movq %rax, %rdi
movq %r14, %rsi
callq 0x2603e
movq 0x10(%rax), %rdi
movq %rbx, %rsi
callq 0x5b055
xorl %eax, %eax
addq $0x8, %rsp
popq %rbx
popq %r14
retq
movq 0xcb2df(%rip), %rax     # 0x12dfb8
movq (%rax), %rdi
leaq 0x67383(%rip), %rsi     # 0xca066
leaq 0x6796f(%rip), %rdx     # 0xca659
leaq 0x7a37e(%rip), %rcx     # 0xdd06f
leaq 0x7a358(%rip), %r8      # 0xdd050
pushq $0x54
popq %r9
xorl %eax, %eax
callq 0xb8c0
callq 0xb300
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/add_ids_visitor.c
// Function: add_ids_visitor_region_node
static int add_ids_visitor_region_node(GtNodeVisitor *nv, GtRegionNode *rn,
                                       GT_UNUSED GtError *err)
{
  GtAddIDsVisitor *aiv;
  const char *seqid;
  int had_err = 0;
  gt_error_check(err);
  aiv = add_ids_visitor_cast(nv);
  seqid = gt_str_get(gt_genome_node_get_seqid((GtGenomeNode*) rn));
  if (gt_hashmap_get(aiv->undefined_sequence_regions, seqid)) {
    gt_error_set(err, "genome feature with id \"%s\" has been defined before "
                 "the corresponding \"%s\" definition on line %u in file "
                 "\"%s\"", seqid, GT_GFF_SEQUENCE_REGION,
                 gt_genome_node_get_line_number((GtGenomeNode*) rn),
                 gt_genome_node_get_filename((GtGenomeNode*) rn));
    had_err = -1;
  }
  if (!had_err) {
    if (!gt_cstr_table_get(aiv->defined_seqids, seqid))
      gt_cstr_table_add(aiv->defined_seqids, seqid);
    gt_queue_add(aiv->node_buffer, rn);
  }
  return had_err;
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r12
pushq %rbx
movq %rdx, %r14
movq %rsi, %rbx
movq %rdi, %r15
testq %rdx, %rdx
je 0x62fd3
movq %r14, %rdi
callq 0xc103
testb %al, %al
jne 0x6307a
callq 0x62bf8
movq %rax, %rdi
movq %r15, %rsi
callq 0x2603e
movq %rax, %r12
movq %rbx, %rdi
callq 0x1c31a
movq %rax, %rdi
callq 0x143d2
movq %rax, %r15
movq 0x20(%r12), %rdi
movq %rax, %rsi
callq 0x55ef6
testq %rax, %rax
je 0x63043
movq %rbx, %rdi
callq 0x1c2d8
movl %eax, %ebp
movq %rbx, %rdi
callq 0x1c285
leaq 0x7a18d(%rip), %rsi     # 0xdd1b1
leaq 0x6cb69(%rip), %rcx     # 0xcfb94
movq %r14, %rdi
movq %r15, %rdx
movl %ebp, %r8d
movq %rax, %r9
xorl %eax, %eax
callq 0xc007
pushq $-0x1
popq %rax
jmp 0x63071
movq 0x18(%r12), %rdi
movq %r15, %rsi
callq 0x5018a
testq %rax, %rax
jne 0x63062
movq 0x18(%r12), %rdi
movq %r15, %rsi
callq 0x500bc
movq 0x10(%r12), %rdi
movq %rbx, %rsi
callq 0x5b055
xorl %eax, %eax
popq %rbx
popq %r12
popq %r14
popq %r15
popq %rbp
retq
movq 0xcaf37(%rip), %rax     # 0x12dfb8
movq (%rax), %rdi
leaq 0x66fdb(%rip), %rsi     # 0xca066
leaq 0x675c7(%rip), %rdx     # 0xca659
leaq 0x7a0fc(%rip), %rcx     # 0xdd195
leaq 0x79fb0(%rip), %r8      # 0xdd050
movl $0xb4, %r9d
xorl %eax, %eax
callq 0xb8c0
callq 0xb300
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/add_ids_visitor.c
// Function: add_ids_visitor_sequence_node
static int add_ids_visitor_sequence_node(GtNodeVisitor *nv, GtSequenceNode *sn,
                                         GT_UNUSED GtError *err)
{
  GtAddIDsVisitor *add_ids_visitor;
  gt_error_check(err);
  add_ids_visitor = add_ids_visitor_cast(nv);
  /* sequence nodes have to be at the end of a stream -> finalize first */
  gt_add_ids_visitor_finalize(nv);
  /* then add sequence node to buffer */
  gt_queue_add(add_ids_visitor->node_buffer, sn);
  return 0;
}

// Assembly:
pushq %r15
pushq %r14
pushq %rbx
movq %rsi, %rbx
movq %rdi, %r14
testq %rdx, %rdx
je 0x630ce
movq %rdx, %rdi
callq 0xc103
testb %al, %al
jne 0x630fd
callq 0x62bf8
movq %rax, %rdi
movq %r14, %rsi
callq 0x2603e
movq %rax, %r15
movq %r14, %rdi
callq 0x63328
movq 0x10(%r15), %rdi
movq %rbx, %rsi
callq 0x5b055
xorl %eax, %eax
popq %rbx
popq %r14
popq %r15
retq
movq 0xcaeb4(%rip), %rax     # 0x12dfb8
movq (%rax), %rdi
leaq 0x66f58(%rip), %rsi     # 0xca066
leaq 0x67544(%rip), %rdx     # 0xca659
leaq 0x7a103(%rip), %rcx     # 0xdd21f
leaq 0x79f2d(%rip), %r8      # 0xdd050
movl $0xcb, %r9d
xorl %eax, %eax
callq 0xb8c0
callq 0xb300
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/add_ids_visitor.c
// Function: add_ids_visitor_eof_node
static int add_ids_visitor_eof_node(GtNodeVisitor *nv, GtEOFNode *eofn,
                                    GT_UNUSED GtError *err)
{
  GtAddIDsVisitor *add_ids_visitor;
  gt_error_check(err);
  add_ids_visitor = add_ids_visitor_cast(nv);
  gt_add_ids_visitor_finalize(nv);
  gt_queue_add(add_ids_visitor->node_buffer, eofn);
  return 0;
}

// Assembly:
pushq %r15
pushq %r14
pushq %rbx
movq %rsi, %rbx
movq %rdi, %r14
testq %rdx, %rdx
je 0x63151
movq %rdx, %rdi
callq 0xc103
testb %al, %al
jne 0x63180
callq 0x62bf8
movq %rax, %rdi
movq %r14, %rsi
callq 0x2603e
movq %rax, %r15
movq %r14, %rdi
callq 0x63328
movq 0x10(%r15), %rdi
movq %rbx, %rsi
callq 0x5b055
xorl %eax, %eax
popq %rbx
popq %r14
popq %r15
retq
movq 0xcae31(%rip), %rax     # 0x12dfb8
movq (%rax), %rdi
leaq 0x66ed5(%rip), %rsi     # 0xca066
leaq 0x674c1(%rip), %rdx     # 0xca659
leaq 0x7a09e(%rip), %rcx     # 0xdd23d
leaq 0x79eaa(%rip), %r8      # 0xdd050
movl $0xd8, %r9d
xorl %eax, %eax
callq 0xb8c0
callq 0xb300
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/add_ids_visitor.c
// Function: add_ids_visitor_meta_node
static int add_ids_visitor_meta_node(GtNodeVisitor *nv, GtMetaNode *mn,
                                     GT_UNUSED GtError *err)
{
  GtAddIDsVisitor *add_ids_visitor;
  gt_error_check(err);
  add_ids_visitor = add_ids_visitor_cast(nv);
  gt_queue_add(add_ids_visitor->node_buffer, mn);
  return 0;
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
movq %rsi, %rbx
movq %rdi, %r14
testq %rdx, %rdx
je 0x631d3
movq %rdx, %rdi
callq 0xc103
testb %al, %al
jne 0x631f9
callq 0x62bf8
movq %rax, %rdi
movq %r14, %rsi
callq 0x2603e
movq 0x10(%rax), %rdi
movq %rbx, %rsi
callq 0x5b055
xorl %eax, %eax
addq $0x8, %rsp
popq %rbx
popq %r14
retq
movq 0xcadb8(%rip), %rax     # 0x12dfb8
movq (%rax), %rdi
leaq 0x66e5c(%rip), %rsi     # 0xca066
leaq 0x67448(%rip), %rdx     # 0xca659
leaq 0x7a03e(%rip), %rcx     # 0xdd256
leaq 0x79e31(%rip), %r8      # 0xdd050
movl $0xa8, %r9d
xorl %eax, %eax
callq 0xb8c0
callq 0xb300
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/add_ids_visitor.c
// Function: gt_add_ids_visitor_new
GtNodeVisitor* gt_add_ids_visitor_new(bool ensure_sorting)
{
  GtNodeVisitor *nv = gt_node_visitor_create(gt_add_ids_visitor_class());
  GtAddIDsVisitor *add_ids_visitor = add_ids_visitor_cast(nv);
  add_ids_visitor->node_buffer = gt_queue_new();
  add_ids_visitor->defined_seqids = gt_cstr_table_new();
  add_ids_visitor->undefined_sequence_regions =
    gt_hashmap_new(GT_HASH_STRING, NULL,
                   (GtFree) automatic_sequence_region_delete);
  add_ids_visitor->ensure_sorting = ensure_sorting;
  return nv;
}

// Assembly:
pushq %r15
pushq %r14
pushq %rbx
movl %edi, %ebx
callq 0x62bf8
movq %rax, %rdi
callq 0x25fe0
movq %rax, %r14
callq 0x62bf8
movq %rax, %rdi
movq %r14, %rsi
callq 0x2603e
movq %rax, %r15
callq 0x5b040
movq %rax, 0x10(%r15)
callq 0x5005c
movq %rax, 0x18(%r15)
leaq 0x1b(%rip), %rdx        # 0x6328f
pushq $0x1
popq %rdi
xorl %esi, %esi
callq 0x55da4
movq %rax, 0x20(%r15)
movb %bl, 0x28(%r15)
movq %r14, %rax
popq %rbx
popq %r14
popq %r15
retq
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/add_ids_visitor.c
// Function: automatic_sequence_region_delete
static void automatic_sequence_region_delete(AutomaticSequenceRegion *auto_sr)
{
  GtUword i;
  if (!auto_sr) return;
  gt_genome_node_delete(auto_sr->sequence_region);
  for (i = 0; i < gt_array_size(auto_sr->feature_nodes); i++) {
    gt_genome_node_delete(*(GtGenomeNode**)
                              gt_array_get(auto_sr->feature_nodes, i));
  }
  gt_array_delete(auto_sr->feature_nodes);
  gt_free(auto_sr);
}

// Assembly:
testq %rdi, %rdi
je 0x632eb
pushq %r14
pushq %rbx
pushq %rax
movq %rdi, %rbx
movq (%rdi), %rdi
callq 0x1d1e3
xorl %r14d, %r14d
movq 0x8(%rbx), %rdi
callq 0x4b988
movq 0x8(%rbx), %rdi
cmpq %rax, %r14
jae 0x632cd
movq %r14, %rsi
callq 0x4b48e
movq (%rax), %rdi
callq 0x1d1e3
incq %r14
jmp 0x632a6
callq 0x4c19d
leaq 0x79d77(%rip), %rsi     # 0xdd050
pushq $0x45
popq %rdx
movq %rbx, %rdi
addq $0x8, %rsp
popq %rbx
popq %r14
jmp 0xd249
retq
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/add_ids_visitor.c
// Function: gt_add_ids_visitor_finalize
void gt_add_ids_visitor_finalize(GtNodeVisitor *nv)
{
  GT_UNUSED int had_err;
  GtAddIDsVisitor *add_ids_visitor = add_ids_visitor_cast(nv);
  had_err = gt_hashmap_foreach(add_ids_visitor->undefined_sequence_regions,
                               add_auto_sr_to_queue,
                               add_ids_visitor->node_buffer, NULL);
  gt_assert(!had_err); /* add_auto_sr_to_queue() is sane */
  gt_hashmap_reset(add_ids_visitor->undefined_sequence_regions);
}

// Assembly:
pushq %rbx
movq %rdi, %rbx
callq 0x62bf8
movq %rax, %rdi
movq %rbx, %rsi
callq 0x2603e
movq %rax, %rbx
movq 0x10(%rax), %rdx
movq 0x20(%rax), %rdi
leaq 0x4d(%rip), %rsi        # 0x6339b
xorl %ecx, %ecx
callq 0x55fe2
testl %eax, %eax
jne 0x63363
movq 0x20(%rbx), %rdi
popq %rbx
jmp 0x56030
movq 0xcac4e(%rip), %rax     # 0x12dfb8
movq (%rax), %rdi
leaq 0x66cf2(%rip), %rsi     # 0xca066
leaq 0x67298(%rip), %rdx     # 0xca613
leaq 0x79cb2(%rip), %rcx     # 0xdd034
leaq 0x79cc7(%rip), %r8      # 0xdd050
movl $0x124, %r9d            # imm = 0x124
xorl %eax, %eax
callq 0xb8c0
callq 0xb300
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/add_ids_visitor.c
// Function: add_auto_sr_to_queue
static int add_auto_sr_to_queue(GT_UNUSED void *key, void *value, void *data,
                                GT_UNUSED GtError *err)
{
  AutomaticSequenceRegion *auto_sr = value;
  GtQueue *genome_nodes = data;
  GtGenomeNode *gf;
  unsigned int i;
  gt_error_check(err);
  gt_assert(key && value && data);
  if (gt_array_size(auto_sr->feature_nodes)) {
    gt_queue_add(genome_nodes, auto_sr->sequence_region);
    auto_sr->sequence_region = NULL;
    for (i = 0; i < gt_array_size(auto_sr->feature_nodes); i++) {
      gf = *(GtGenomeNode**) gt_array_get(auto_sr->feature_nodes, i);
      gt_queue_add(genome_nodes, gf);
    }
    gt_array_reset(auto_sr->feature_nodes);
  }
  return 0;
}

// Assembly:
pushq %r15
pushq %r14
pushq %rbx
movq %rdx, %rbx
movq %rsi, %r14
movq %rdi, %r15
testq %rcx, %rcx
je 0x633be
movq %rcx, %rdi
callq 0xc103
testb %al, %al
jne 0x63455
testq %r15, %r15
je 0x63427
testq %r14, %r14
je 0x63427
testq %rbx, %rbx
je 0x63427
movq 0x8(%r14), %rdi
callq 0x4b988
testq %rax, %rax
je 0x6341f
movq (%r14), %rsi
movq %rbx, %rdi
callq 0x5b055
andq $0x0, (%r14)
xorl %eax, %eax
movl %eax, %r15d
movq 0x8(%r14), %rdi
callq 0x4b988
movq 0x8(%r14), %rdi
cmpq %r15, %rax
jbe 0x6341a
movq %r15, %rsi
callq 0x4b48e
movq (%rax), %rsi
movq %rbx, %rdi
callq 0x5b055
leal 0x1(%r15), %eax
jmp 0x633ec
callq 0x4ba50
xorl %eax, %eax
popq %rbx
popq %r14
popq %r15
retq
movq 0xcab8a(%rip), %rax     # 0x12dfb8
movq (%rax), %rdi
leaq 0x66c2e(%rip), %rsi     # 0xca066
leaq 0x672f4(%rip), %rdx     # 0xca733
leaq 0x79e2a(%rip), %rcx     # 0xdd270
leaq 0x79c03(%rip), %r8      # 0xdd050
movl $0x110, %r9d            # imm = 0x110
jmp 0x63481
movq 0xcab5c(%rip), %rax     # 0x12dfb8
movq (%rax), %rdi
leaq 0x66c00(%rip), %rsi     # 0xca066
leaq 0x671ec(%rip), %rdx     # 0xca659
leaq 0x79dfc(%rip), %rcx     # 0xdd270
leaq 0x79bd5(%rip), %r8      # 0xdd050
movl $0x10f, %r9d            # imm = 0x10F
xorl %eax, %eax
callq 0xb8c0
callq 0xb300
nopl (%rax)
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/cds_check_stream.c
// Function: gt_cds_check_stream_class
const GtNodeStreamClass* gt_cds_check_stream_class(void)
{
  static const GtNodeStreamClass *nsc = NULL;
  gt_class_alloc_lock_enter();
  if (!nsc) {
    nsc = gt_node_stream_class_new(sizeof (GtCDSCheckStream),
                                   cds_check_stream_free,
                                   cds_check_stream_next);
  }
  gt_class_alloc_lock_leave();
  return nsc;
}

// Assembly:
pushq %rax
callq 0x4f21f
cmpq $0x0, 0xcc782(%rip)     # 0x12fc20
jne 0x634bd
leaq 0x24(%rip), %rsi        # 0x634cb
leaq 0x47(%rip), %rdx        # 0x634f5
pushq $0x20
popq %rdi
callq 0x25a78
movq %rax, 0xcc763(%rip)     # 0x12fc20
callq 0x4f266
movq 0xcc757(%rip), %rax     # 0x12fc20
popq %rcx
retq
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/cds_check_stream.c
// Function: cds_check_stream_next
static int cds_check_stream_next(GtNodeStream *ns, GtGenomeNode **gn,
                                 GtError *err)
{
  GtCDSCheckStream *cs;
  int had_err;
  gt_error_check(err);
  cs = cds_check_stream_cast(ns);
  gt_assert(cs);
  had_err = gt_node_stream_next(cs->in_stream, gn, err);
  if (!had_err && *gn)
    had_err = gt_genome_node_accept(*gn, cs->cds_check_visitor, err);
  if (had_err) {
    /* we own the node -> delete it */
    gt_genome_node_delete(*gn);
    *gn = NULL;
  }
  return had_err;
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %rbx
pushq %rax
movq %rdx, %r14
movq %rsi, %rbx
movq %rdi, %r15
testq %rdx, %rdx
je 0x6351a
movq %r14, %rdi
callq 0xc103
testb %al, %al
jne 0x635a6
callq 0x63490
movq %rax, %rdi
movq %r15, %rsi
callq 0x25ec1
testq %rax, %rax
je 0x6357c
movq %rax, %r15
movq 0x10(%rax), %rdi
movq %rbx, %rsi
movq %r14, %rdx
callq 0x25c62
testl %eax, %eax
je 0x63560
movl %eax, %ebp
movq (%rbx), %rdi
callq 0x1d1e3
andq $0x0, (%rbx)
movl %ebp, %eax
addq $0x8, %rsp
popq %rbx
popq %r14
popq %r15
popq %rbp
retq
movq (%rbx), %rdi
xorl %ebp, %ebp
testq %rdi, %rdi
je 0x63553
movq 0x18(%r15), %rsi
movq %r14, %rdx
callq 0x1c56c
testl %eax, %eax
jne 0x63545
jmp 0x63553
movq 0xcaa35(%rip), %rax     # 0x12dfb8
movq (%rax), %rdi
leaq 0x66ad9(%rip), %rsi     # 0xca066
leaq 0x66de8(%rip), %rdx     # 0xca37c
leaq 0x79d2f(%rip), %rcx     # 0xdd2ca
leaq 0x79d08(%rip), %r8      # 0xdd2aa
pushq $0x27
jmp 0x635ce
movq 0xcaa0b(%rip), %rax     # 0x12dfb8
movq (%rax), %rdi
leaq 0x66aaf(%rip), %rsi     # 0xca066
leaq 0x6709b(%rip), %rdx     # 0xca659
leaq 0x79d05(%rip), %rcx     # 0xdd2ca
leaq 0x79cde(%rip), %r8      # 0xdd2aa
pushq $0x25
popq %r9
xorl %eax, %eax
callq 0xb8c0
callq 0xb300
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/cds_check_stream.c
// Function: gt_cds_check_stream_new
GtNodeStream* gt_cds_check_stream_new(GtNodeStream *in_stream)
{
  GtNodeStream *ns = gt_node_stream_create(gt_cds_check_stream_class(), false);
  GtCDSCheckStream *cs = cds_check_stream_cast(ns);
  cs->in_stream = gt_node_stream_ref(in_stream);
  cs->cds_check_visitor = gt_cds_check_visitor_new();
  return ns;
}

// Assembly:
pushq %r15
pushq %r14
pushq %rbx
movq %rdi, %rbx
callq 0x63490
movq %rax, %rdi
xorl %esi, %esi
callq 0x25adf
movq %rax, %r14
callq 0x63490
movq %rax, %rdi
movq %r14, %rsi
callq 0x25ec1
movq %rax, %r15
movq %rbx, %rdi
callq 0x25b74
movq %rax, 0x10(%r15)
callq 0x63add
movq %rax, 0x18(%r15)
movq %r14, %rax
popq %rbx
popq %r14
popq %r15
retq
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/cds_check_visitor.c
// Function: gt_cds_check_visitor_class
const GtNodeVisitorClass* gt_cds_check_visitor_class()
{
  static const GtNodeVisitorClass *nvc = NULL;
  gt_class_alloc_lock_enter();
  if (!nvc) {
    nvc = gt_node_visitor_class_new(sizeof (GtCDSCheckVisitor),
                                    cds_check_visitor_free,
                                    NULL,
                                    cds_check_visitor_feature_node,
                                    NULL,
                                    NULL,
                                    NULL);
  }
  gt_class_alloc_lock_leave();
  return nvc;
}

// Assembly:
pushq %rax
callq 0x4f21f
cmpq $0x0, 0xcc5ae(%rip)     # 0x12fc28
jne 0x636a6
andq $0x0, (%rsp)
leaq 0x2c(%rip), %rsi        # 0x636b4
leaq 0x4f(%rip), %rcx        # 0x636de
pushq $0x28
popq %rdi
xorl %edx, %edx
xorl %r8d, %r8d
xorl %r9d, %r9d
callq 0x25f10
movq %rax, 0xcc582(%rip)     # 0x12fc28
callq 0x4f266
movq 0xcc576(%rip), %rax     # 0x12fc28
popq %rcx
retq
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/cds_check_visitor.c
// Function: gt_cds_check_visitor_new
GtNodeVisitor* gt_cds_check_visitor_new(void)
{
  GtNodeVisitor *nv = gt_node_visitor_create(gt_cds_check_visitor_class());
  GtCDSCheckVisitor *v = cds_check_visitor_cast(nv);
  v->cds_features = gt_hashmap_new(GT_HASH_DIRECT, NULL, NULL);
  v->cds_features_to_split = gt_hashmap_new(GT_HASH_DIRECT, NULL, NULL);
  return nv;
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
callq 0x6366c
movq %rax, %rdi
callq 0x25fe0
movq %rax, %rbx
callq 0x6366c
movq %rax, %rdi
movq %rbx, %rsi
callq 0x2603e
movq %rax, %r14
xorl %edi, %edi
xorl %esi, %esi
xorl %edx, %edx
callq 0x55da4
movq %rax, 0x10(%r14)
xorl %edi, %edi
xorl %esi, %esi
xorl %edx, %edx
callq 0x55da4
movq %rax, 0x18(%r14)
movq %rbx, %rax
addq $0x8, %rsp
popq %rbx
popq %r14
retq
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/cds_check_visitor.c
// Function: check_cds_phases_hm
static int check_cds_phases_hm(GT_UNUSED void *key, void *value, void *data,
                               GtError *err)
{
  GtArray *cds_features = value;
  gt_error_check(err);
  gt_assert(cds_features && data);
  return check_cds_phases(cds_features, data, true, false, err);
}

// Assembly:
pushq %r15
pushq %r14
pushq %rbx
movq %rcx, %rbx
movq %rdx, %r14
movq %rsi, %r15
testq %rcx, %rcx
je 0x640c8
movq %rbx, %rdi
callq 0xc103
testb %al, %al
jne 0x64116
testq %r15, %r15
je 0x640e8
testq %r14, %r14
je 0x640e8
pushq $0x1
popq %rdx
movq %r15, %rdi
movq %r14, %rsi
movq %rbx, %rcx
popq %rbx
popq %r14
popq %r15
jmp 0x63d2c
movq 0xc9ec9(%rip), %rax     # 0x12dfb8
movq (%rax), %rdi
leaq 0x65f6d(%rip), %rsi     # 0xca066
leaq 0x79412(%rip), %rdx     # 0xdd512
leaq 0x793f7(%rip), %rcx     # 0xdd4fe
leaq 0x791f8(%rip), %r8      # 0xdd306
movl $0x8d, %r9d
jmp 0x64142
movq 0xc9e9b(%rip), %rax     # 0x12dfb8
movq (%rax), %rdi
leaq 0x65f3f(%rip), %rsi     # 0xca066
leaq 0x6652b(%rip), %rdx     # 0xca659
leaq 0x793c9(%rip), %rcx     # 0xdd4fe
leaq 0x791ca(%rip), %r8      # 0xdd306
movl $0x8c, %r9d
xorl %eax, %eax
callq 0xb8c0
callq 0xb300
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/cds_check_visitor.c
// Function: collect_cds_feature
static int collect_cds_feature(void *key, GT_UNUSED void *value, void *data,
                               GT_UNUSED GtError *err)
{
  GtArray *cds_features = data;
  gt_error_check(err);
  gt_array_add(cds_features, key);
  return 0;
}

// Assembly:
pushq %rbx
subq $0x10, %rsp
movq %rdx, %rbx
movq %rdi, 0x8(%rsp)
testq %rcx, %rcx
je 0x6416c
movq %rcx, %rdi
callq 0xc103
testb %al, %al
jne 0x64184
leaq 0x8(%rsp), %rsi
pushq $0x8
popq %rdx
movq %rbx, %rdi
callq 0x4b801
xorl %eax, %eax
addq $0x10, %rsp
popq %rbx
retq
movq 0xc9e2d(%rip), %rax     # 0x12dfb8
movq (%rax), %rdi
leaq 0x65ed1(%rip), %rsi     # 0xca066
leaq 0x664bd(%rip), %rdx     # 0xca659
leaq 0x793af(%rip), %rcx     # 0xdd552
leaq 0x7915c(%rip), %r8      # 0xdd306
movl $0xc6, %r9d
xorl %eax, %eax
callq 0xb8c0
callq 0xb300
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/comment_node.c
// Function: gt_comment_node_class
const GtGenomeNodeClass* gt_comment_node_class()
{
  static const GtGenomeNodeClass *gnc = NULL;
  gt_class_alloc_lock_enter();
  if (!gnc) {
    gnc = gt_genome_node_class_new(sizeof (GtCommentNode),
                                   comment_node_free,
                                   NULL,
                                   comment_node_get_idstr,
                                   comment_node_get_range,
                                   NULL,
                                   NULL,
                                   comment_node_accept);
  }
  gt_class_alloc_lock_leave();
  return gnc;
}

// Assembly:
subq $0x18, %rsp
callq 0x4f21f
cmpq $0x0, 0xcba63(%rip)     # 0x12fc30
jne 0x64209
andq $0x0, (%rsp)
leaq 0xf1(%rip), %rax        # 0x642cc
movq %rax, 0x8(%rsp)
leaq 0x33(%rip), %rsi        # 0x6421a
leaq 0x92(%rip), %rcx        # 0x64280
leaq 0xd2(%rip), %r8         # 0x642c7
pushq $0x40
popq %rdi
xorl %edx, %edx
xorl %r9d, %r9d
callq 0x1bf21
movq %rax, 0xcba27(%rip)     # 0x12fc30
callq 0x4f266
movq 0xcba1b(%rip), %rax     # 0x12fc30
addq $0x18, %rsp
retq
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/comment_node.c
// Function: comment_node_free
static void comment_node_free(GtGenomeNode *gn)
{
  GtCommentNode *c = gt_comment_node_cast(gn);
  gt_assert(c && c->comment);
  gt_free(c->comment);
  gt_str_delete(c->comment_str);
}

// Assembly:
pushq %rbx
callq 0x643bf
testq %rax, %rax
je 0x6424a
movq %rax, %rbx
movq 0x30(%rax), %rdi
testq %rdi, %rdi
je 0x6424a
leaq 0x79366(%rip), %rsi     # 0xdd59e
pushq $0x26
popq %rdx
callq 0xd249
movq 0x38(%rbx), %rdi
popq %rbx
jmp 0x152db
movq 0xc9d67(%rip), %rax     # 0x12dfb8
movq (%rax), %rdi
leaq 0x65e0b(%rip), %rsi     # 0xca066
leaq 0x79358(%rip), %rdx     # 0xdd5ba
leaq 0x7937d(%rip), %rcx     # 0xdd5e6
leaq 0x7932e(%rip), %r8      # 0xdd59e
pushq $0x25
popq %r9
xorl %eax, %eax
callq 0xb8c0
callq 0xb300
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/comment_node.c
// Function: comment_node_get_idstr
static GtStr* comment_node_get_idstr(GtGenomeNode *gn)
{
  GtCommentNode *c;
  gt_assert(gn);
  c = gt_comment_node_cast(gn);
  return c->comment_str;
}

// Assembly:
pushq %rax
testq %rdi, %rdi
je 0x64291
callq 0x643bf
movq 0x38(%rax), %rax
popq %rcx
retq
movq 0xc9d20(%rip), %rax     # 0x12dfb8
movq (%rax), %rdi
leaq 0x65dc4(%rip), %rsi     # 0xca066
leaq 0x7a52c(%rip), %rdx     # 0xde7d5
leaq 0x79348(%rip), %rcx     # 0xdd5f8
leaq 0x792e7(%rip), %r8      # 0xdd59e
pushq $0x2d
popq %r9
xorl %eax, %eax
callq 0xb8c0
callq 0xb300
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/comment_node.c
// Function: comment_node_accept
static int comment_node_accept(GtGenomeNode *gn, GtNodeVisitor *nv,
                               GtError *err)
{
  GtCommentNode *c;
  gt_error_check(err);
  c = gt_comment_node_cast(gn);
  return gt_node_visitor_visit_comment_node(nv, c, err);
}

// Assembly:
pushq %r15
pushq %r14
pushq %rbx
movq %rdx, %rbx
movq %rsi, %r14
movq %rdi, %r15
testq %rdx, %rdx
je 0x642eb
movq %rbx, %rdi
callq 0xc103
testb %al, %al
jne 0x64306
movq %r15, %rdi
callq 0x643bf
movq %r14, %rdi
movq %rax, %rsi
movq %rbx, %rdx
popq %rbx
popq %r14
popq %r15
jmp 0x26088
movq 0xc9cab(%rip), %rax     # 0x12dfb8
movq (%rax), %rdi
leaq 0x65d4f(%rip), %rsi     # 0xca066
leaq 0x6633b(%rip), %rdx     # 0xca659
leaq 0x792ea(%rip), %rcx     # 0xdd60f
leaq 0x79272(%rip), %r8      # 0xdd59e
pushq $0x3e
popq %r9
xorl %eax, %eax
callq 0xb8c0
callq 0xb300
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/comment_node.c
// Function: gt_comment_node_new
GtGenomeNode* gt_comment_node_new(const char *comment)
{
  GtGenomeNode *gn = gt_genome_node_create(gt_comment_node_class());
  GtCommentNode *c = gt_comment_node_cast(gn);
  gt_assert(comment);
  c->comment = gt_cstr_dup(comment);
  c->comment_str = gt_str_new_cstr("");
  return gn;
}

// Assembly:
pushq %r15
pushq %r14
pushq %rbx
movq %rdi, %r14
callq 0x641bc
movq %rax, %rdi
callq 0x1c0f3
movq %rax, %rbx
movq %rax, %rdi
callq 0x643bf
testq %r14, %r14
je 0x64389
movq %rax, %r15
movq %r14, %rdi
callq 0x4f8ae
movq %rax, 0x30(%r15)
leaq 0x73768(%rip), %rdi     # 0xd7adf
callq 0x13da9
movq %rax, 0x38(%r15)
movq %rbx, %rax
popq %rbx
popq %r14
popq %r15
retq
movq 0xc9c28(%rip), %rax     # 0x12dfb8
movq (%rax), %rdi
leaq 0x65ccc(%rip), %rsi     # 0xca066
leaq 0x72bba(%rip), %rdx     # 0xd6f5b
leaq 0x791e2(%rip), %rcx     # 0xdd58a
leaq 0x791ef(%rip), %r8      # 0xdd59e
pushq $0x59
popq %r9
xorl %eax, %eax
callq 0xb8c0
callq 0xb300
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/eof_node.c
// Function: gt_eof_node_class
const GtGenomeNodeClass* gt_eof_node_class()
{
  static const GtGenomeNodeClass *gnc = NULL;
  gt_class_alloc_lock_enter();
  if (!gnc) {
    gnc = gt_genome_node_class_new(sizeof (GtEOFNode),
                                   eof_node_free,
                                   NULL,
                                   eof_node_get_idstr,
                                   eof_node_get_range,
                                   NULL,
                                   eof_node_change_seqid,
                                   eof_node_accept);
  }
  gt_class_alloc_lock_leave();
  return gnc;
}

// Assembly:
pushq %rax
callq 0x4f21f
cmpq $0x0, 0xcb7fa(%rip)     # 0x12fc38
jne 0x6447c
leaq 0xad(%rip), %rax        # 0x644f4
leaq 0xa5(%rip), %r10        # 0x644f3
leaq 0x35(%rip), %rsi        # 0x6448a
leaq 0x53(%rip), %rcx        # 0x644af
leaq 0x8b(%rip), %r8         # 0x644ee
pushq $0x38
popq %rdi
xorl %edx, %edx
xorl %r9d, %r9d
pushq %rax
pushq %r10
callq 0x1bf21
popq %rcx
popq %rdx
movq %rax, 0xcb7bc(%rip)     # 0x12fc38
callq 0x4f266
movq 0xcb7b0(%rip), %rax     # 0x12fc38
popq %rcx
retq
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/eof_node.c
// Function: eof_node_get_idstr
static GtStr* eof_node_get_idstr(GT_UNUSED GtGenomeNode *gn)
{
  GtEOFNode *eof;
  eof = gt_eof_node_cast(gn);
  if (!eof->idstr) {
    eof->idstr = gt_str_new_cstr(gt_genome_node_get_filename(gn));
  }
  return eof->idstr;
}

// Assembly:
pushq %r14
pushq %rbx
pushq %rax
movq %rdi, %r14
callq 0x64430
movq %rax, %rdi
movq %r14, %rsi
callq 0x1c1ec
movq %rax, %rbx
movq 0x30(%rax), %rax
testq %rax, %rax
jne 0x644e6
movq %r14, %rdi
callq 0x1c285
movq %rax, %rdi
callq 0x13da9
movq %rax, 0x30(%rbx)
addq $0x8, %rsp
popq %rbx
popq %r14
retq
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/eof_node.c
// Function: eof_node_accept
static int eof_node_accept(GtGenomeNode *gn, GtNodeVisitor *nv, GtError *err)
{
  GtEOFNode *eof;
  gt_error_check(err);
  eof = gt_eof_node_cast(gn);
  return gt_node_visitor_visit_eof_node(nv, eof, err);
}

// Assembly:
pushq %r15
pushq %r14
pushq %rbx
movq %rdx, %rbx
movq %rsi, %r14
movq %rdi, %r15
testq %rdx, %rdx
je 0x64513
movq %rbx, %rdi
callq 0xc103
testb %al, %al
jne 0x64536
callq 0x64430
movq %rax, %rdi
movq %r15, %rsi
callq 0x1c1ec
movq %r14, %rdi
movq %rax, %rsi
movq %rbx, %rdx
popq %rbx
popq %r14
popq %r15
jmp 0x26402
movq 0xc9a7b(%rip), %rax     # 0x12dfb8
movq (%rax), %rdi
leaq 0x65b1f(%rip), %rsi     # 0xca066
leaq 0x6610b(%rip), %rdx     # 0xca659
leaq 0x790ce(%rip), %rcx     # 0xdd623
leaq 0x790d7(%rip), %r8      # 0xdd633
pushq $0x22
popq %r9
xorl %eax, %eax
callq 0xb8c0
callq 0xb300
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/eof_node.c
// Function: gt_eof_node_new
GtGenomeNode* gt_eof_node_new(void)
{
  GtEOFNode *eof;
  GtGenomeNode *gn = gt_genome_node_create(gt_eof_node_class());
  eof = gt_eof_node_cast(gn);
  eof->idstr = NULL;
  return gn;
}

// Assembly:
pushq %rbx
callq 0x64430
movq %rax, %rdi
callq 0x1c0f3
movq %rax, %rbx
callq 0x64430
movq %rax, %rdi
movq %rbx, %rsi
callq 0x1c1ec
andq $0x0, 0x30(%rax)
movq %rbx, %rax
popq %rbx
retq
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/feature_info.c
// Function: gt_feature_info_new
GtFeatureInfo* gt_feature_info_new(void)
{
  GtFeatureInfo *fi = gt_malloc(sizeof *fi);
  fi->id_to_genome_node = gt_hashmap_new(GT_HASH_STRING, gt_free_func,
                                         (GtFree) gt_genome_node_delete);
  fi->id_to_pseudo_parent = gt_hashmap_new(GT_HASH_STRING, gt_free_func,
                                           (GtFree) gt_genome_node_delete);
  return fi;
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %rbx
pushq %rax
leaq 0x79091(%rip), %rsi     # 0xdd64b
pushq $0x10
popq %rdi
pushq $0x21
popq %rdx
callq 0xccb0
movq %rax, %rbx
leaq -0x57240(%rip), %r14    # 0xd38f
leaq -0x473f3(%rip), %r15    # 0x1d1e3
pushq $0x1
popq %rbp
movl %ebp, %edi
movq %r14, %rsi
movq %r15, %rdx
callq 0x55da4
movq %rax, (%rbx)
movl %ebp, %edi
movq %r14, %rsi
movq %r15, %rdx
callq 0x55da4
movq %rax, 0x8(%rbx)
movq %rbx, %rax
addq $0x8, %rsp
popq %rbx
popq %r14
popq %r15
popq %rbp
retq
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/feature_info.c
// Function: gt_feature_info_delete
void gt_feature_info_delete(GtFeatureInfo *fi)
{
  if (!fi) return;
  gt_hashmap_delete(fi->id_to_genome_node);
  gt_hashmap_delete(fi->id_to_pseudo_parent);
  gt_free(fi);
}

// Assembly:
testq %rdi, %rdi
je 0x64635
pushq %rbx
movq %rdi, %rbx
movq (%rdi), %rdi
callq 0x563a7
movq 0x8(%rbx), %rdi
callq 0x563a7
leaq 0x79022(%rip), %rsi     # 0xdd64b
pushq $0x2e
popq %rdx
movq %rbx, %rdi
popq %rbx
jmp 0xd249
retq
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/feature_info.c
// Function: gt_feature_info_add
void gt_feature_info_add(GtFeatureInfo *fi, const char *id, GtFeatureNode *fn)
{
  gt_assert(fi && id && fn);
  gt_assert(!gt_feature_node_is_pseudo((GtFeatureNode*) fn));
  gt_hashmap_add(fi->id_to_genome_node, gt_cstr_dup(id),
                 gt_genome_node_ref((GtGenomeNode*) fn));
}

// Assembly:
pushq %r15
pushq %r14
pushq %rbx
testq %rdi, %rdi
je 0x64722
movq %rsi, %r14
testq %rsi, %rsi
je 0x64722
movq %rdx, %rbx
testq %rdx, %rdx
je 0x64722
movq %rdi, %r15
movq %rbx, %rdi
callq 0x19959
testb %al, %al
jne 0x6474c
movq (%r15), %r15
movq %r14, %rdi
callq 0x4f8ae
movq %rax, %r14
movq %rbx, %rdi
callq 0x1bec8
movq %r15, %rdi
movq %r14, %rsi
movq %rax, %rdx
popq %rbx
popq %r14
popq %r15
jmp 0x55f31
movq 0xc988f(%rip), %rax     # 0x12dfb8
movq (%rax), %rdi
leaq 0x65933(%rip), %rsi     # 0xca066
leaq 0x78f60(%rip), %rdx     # 0xdd69a
leaq 0x78f68(%rip), %rcx     # 0xdd6a9
leaq 0x78f03(%rip), %r8      # 0xdd64b
pushq $0x40
jmp 0x64774
movq 0xc9865(%rip), %rax     # 0x12dfb8
movq (%rax), %rdi
leaq 0x65909(%rip), %rsi     # 0xca066
leaq 0x78f59(%rip), %rdx     # 0xdd6bd
leaq 0x78f3e(%rip), %rcx     # 0xdd6a9
leaq 0x78ed9(%rip), %r8      # 0xdd64b
pushq $0x41
popq %r9
xorl %eax, %eax
callq 0xb8c0
callq 0xb300
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/feature_info.c
// Function: gt_feature_info_add_pseudo_parent
void gt_feature_info_add_pseudo_parent(GtFeatureInfo *fi, const char *id,
                                       GtFeatureNode *pseudo_parent)
{
  gt_assert(fi && id && pseudo_parent);
  gt_assert(gt_feature_node_is_pseudo((GtFeatureNode*) pseudo_parent));
  gt_hashmap_add(fi->id_to_pseudo_parent, gt_cstr_dup(id),
                 gt_genome_node_ref((GtGenomeNode*) pseudo_parent));
}

// Assembly:
pushq %r15
pushq %r14
pushq %rbx
testq %rdi, %rdi
je 0x6481f
movq %rsi, %r14
testq %rsi, %rsi
je 0x6481f
movq %rdx, %rbx
testq %rdx, %rdx
je 0x6481f
movq %rdi, %r15
movq %rbx, %rdi
callq 0x19959
testb %al, %al
je 0x64849
movq 0x8(%r15), %r15
movq %r14, %rdi
callq 0x4f8ae
movq %rax, %r14
movq %rbx, %rdi
callq 0x1bec8
movq %r15, %rdi
movq %r14, %rsi
movq %rax, %rdx
popq %rbx
popq %r14
popq %r15
jmp 0x55f31
movq 0xc9792(%rip), %rax     # 0x12dfb8
movq (%rax), %rdi
leaq 0x65836(%rip), %rsi     # 0xca066
leaq 0x78ed8(%rip), %rdx     # 0xdd70f
leaq 0x78eeb(%rip), %rcx     # 0xdd729
leaq 0x78e06(%rip), %r8      # 0xdd64b
pushq $0x50
jmp 0x64871
movq 0xc9768(%rip), %rax     # 0x12dfb8
movq (%rax), %rdi
leaq 0x6580c(%rip), %rsi     # 0xca066
leaq 0x78eea(%rip), %rdx     # 0xdd74b
leaq 0x78ec1(%rip), %rcx     # 0xdd729
leaq 0x78ddc(%rip), %r8      # 0xdd64b
pushq $0x51
popq %r9
xorl %eax, %eax
callq 0xb8c0
callq 0xb300
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/feature_info.c
// Function: gt_feature_info_replace_pseudo_parent
void gt_feature_info_replace_pseudo_parent(GtFeatureInfo *fi,
                                           GtFeatureNode *child,
                                           GtFeatureNode *new_pseudo_parent)
{
  const char *id;
  gt_assert(fi && child && new_pseudo_parent);
  gt_assert(gt_feature_node_is_pseudo((GtFeatureNode*) new_pseudo_parent));
  id = gt_feature_node_get_attribute(child, GT_GFF_ID);
  gt_assert(id);
  gt_hashmap_remove(fi->id_to_pseudo_parent, id);
  gt_feature_info_add_pseudo_parent(fi, id, new_pseudo_parent);
}

// Assembly:
pushq %r15
pushq %r14
pushq %rbx
testq %rdi, %rdi
je 0x648de
movq %rsi, %r15
testq %rsi, %rsi
je 0x648de
movq %rdx, %rbx
testq %rdx, %rdx
je 0x648de
movq %rdi, %r14
movq %rbx, %rdi
callq 0x19959
testb %al, %al
je 0x64908
leaq 0x6be64(%rip), %rsi     # 0xd0713
movq %r15, %rdi
callq 0x18818
testq %rax, %rax
je 0x64932
movq %rax, %r15
movq 0x8(%r14), %rdi
movq %rax, %rsi
callq 0x55f6f
movq %r14, %rdi
movq %r15, %rsi
movq %rbx, %rdx
popq %rbx
popq %r14
popq %r15
jmp 0x647cc
movq 0xc96d3(%rip), %rax     # 0x12dfb8
movq (%rax), %rdi
leaq 0x65777(%rip), %rsi     # 0xca066
leaq 0x78e8f(%rip), %rdx     # 0xdd785
leaq 0x78ea9(%rip), %rcx     # 0xdd7a6
leaq 0x78d47(%rip), %r8      # 0xdd64b
pushq $0x5b
jmp 0x6495a
movq 0xc96a9(%rip), %rax     # 0x12dfb8
movq (%rax), %rdi
leaq 0x6574d(%rip), %rsi     # 0xca066
leaq 0x78eac(%rip), %rdx     # 0xdd7cc
leaq 0x78e7f(%rip), %rcx     # 0xdd7a6
leaq 0x78d1d(%rip), %r8      # 0xdd64b
pushq $0x5c
jmp 0x6495a
movq 0xc967f(%rip), %rax     # 0x12dfb8
movq (%rax), %rdi
leaq 0x65723(%rip), %rsi     # 0xca066
leaq 0x78d39(%rip), %rdx     # 0xdd683
leaq 0x78e55(%rip), %rcx     # 0xdd7a6
leaq 0x78cf3(%rip), %r8      # 0xdd64b
pushq $0x5e
popq %r9
xorl %eax, %eax
callq 0xb8c0
callq 0xb300
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/gff3_escaping.c
// Function: gt_gff3_escape
void gt_gff3_escape(GtStr *escaped_seq, const char *unescaped_seq,
                    GtUword length)
{
  const char *cc;
  gt_assert(escaped_seq && unescaped_seq);
  for (cc = unescaped_seq; cc < unescaped_seq + length; cc++) {
    switch (*cc) {
      case ';':  gt_str_append_cstr(escaped_seq, SEMICOLON); break;
      case '=':  gt_str_append_cstr(escaped_seq, EQUALS); break;
      case '%':  gt_str_append_cstr(escaped_seq, PERCENT); break;
      case '&':  gt_str_append_cstr(escaped_seq, AND); break;
      case ',':  gt_str_append_cstr(escaped_seq, COMMA); break;
      default:
        if ((*cc > 0 && *cc < 0x20) || *cc == 0x7F) {
          gt_gff3_escape_controlchar2hex(escaped_seq, *cc);
        } else gt_str_append_char(escaped_seq, *cc);
    }
  }
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
pushq %rax
testq %rdi, %rdi
je 0x6504b
movq %rsi, %r14
testq %rsi, %rsi
je 0x6504b
movq %rdx, %rbx
movq %rdi, %r15
addq %r14, %rbx
leaq 0x78af6(%rip), %r13     # 0xdda6e
leaq 0x78c81(%rip), %rbp     # 0xddc00
cmpq %rbx, %r14
jae 0x6503c
movzbl (%r14), %r12d
cmpl $0x25, %r12d
je 0x65017
cmpl $0x26, %r12d
je 0x64fb6
cmpl $0x2c, %r12d
je 0x64fce
cmpl $0x3d, %r12d
je 0x64fc2
cmpl $0x3b, %r12d
jne 0x64fda
movq %r15, %rdi
movq %r13, %rsi
jmp 0x65021
movq %r15, %rdi
leaq 0x78aba(%rip), %rsi     # 0xdda7a
jmp 0x65021
movq %r15, %rdi
leaq 0x78aa6(%rip), %rsi     # 0xdda72
jmp 0x65021
movq %r15, %rdi
leaq 0x78aa6(%rip), %rsi     # 0xdda7e
jmp 0x65021
movl %r12d, %eax
decb %al
cmpb $0x1f, %al
setae %al
cmpl $0x7f, %r12d
setne %cl
testb %al, %cl
jne 0x6502e
movq %r15, %rdi
pushq $0x25
popq %rsi
callq 0x140b1
movl %r12d, %eax
shrl $0x4, %eax
movsbl (%rax,%rbp), %esi
movq %r15, %rdi
callq 0x140b1
andl $0xf, %r12d
movsbl (%r12,%rbp), %esi
jmp 0x65032
movq %r15, %rdi
leaq 0x78a55(%rip), %rsi     # 0xdda76
callq 0x13dd3
incq %r14
jmp 0x64f7f
movsbl %r12b, %esi
movq %r15, %rdi
callq 0x140b1
jmp 0x65026
addq $0x8, %rsp
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
retq
movq 0xc8f66(%rip), %rax     # 0x12dfb8
movq (%rax), %rdi
leaq 0x6500a(%rip), %rsi     # 0xca066
leaq 0x789c2(%rip), %rdx     # 0xdda25
leaq 0x789d8(%rip), %rcx     # 0xdda42
leaq 0x789e0(%rip), %r8      # 0xdda51
pushq $0x5a
popq %r9
xorl %eax, %eax
callq 0xb8c0
callq 0xb300
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/gff3_escaping.c
// Function: gt_gff3_unescape
int gt_gff3_unescape(GtStr *unescaped_seq, const char *escaped_seq,
                     GtUword length, GtError *err)
{
  const char *cc;
  int had_err = 0;
  gt_error_check(err);
  gt_assert(unescaped_seq && escaped_seq);
  for (cc = escaped_seq; !had_err && cc < escaped_seq + length; cc++) {
    if (*cc == '%') {
      if (cc + 2 >= escaped_seq + length) {
        gt_error_set(err, "not enough sequence left to unescape after '%%'");
        had_err = -1;
      } else {
        char x = GT_UNDEF_CHAR;
        int ret = gt_gff3_escape_hex2prnchar(cc, &x);
        if (ret == 0 && x != GT_UNDEF_CHAR) {
          gt_str_append_char(unescaped_seq, x);
          cc += 2;
        } else gt_str_append_char(unescaped_seq, *cc);
      }
    } else gt_str_append_char(unescaped_seq, *cc);
  }
  return had_err;
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
pushq %rax
movq %rcx, %rbx
movq %rdx, %r14
movq %rsi, %r12
movq %rdi, %r15
testq %rcx, %rcx
je 0x650ad
movq %rbx, %rdi
callq 0xc103
testb %al, %al
jne 0x651a7
testq %r15, %r15
je 0x6517d
testq %r12, %r12
je 0x6517d
addq %r12, %r14
leaq 0x78bc7(%rip), %rbp     # 0xddc90
xorl %eax, %eax
testl %eax, %eax
jne 0x6516e
cmpq %r14, %r12
jae 0x6516e
movb (%r12), %al
cmpb $0x25, %al
jne 0x65131
leaq 0x2(%r12), %r13
cmpq %r14, %r13
jae 0x65140
movsbq 0x1(%r12), %rax
testb $0x2, (%rax,%rbp)
je 0x65129
movsbq (%r13), %rcx
testb $0x1, (%rcx,%rbp)
je 0x65129
movl %eax, %edx
xorb $0x37, %dl
movl %ecx, %esi
xorb $0x46, %sil
orb %dl, %sil
je 0x65129
leaq 0x78b04(%rip), %rdx     # 0xddc20
movb (%rax,%rdx), %al
shlb $0x4, %al
orb (%rcx,%rdx), %al
cmpb $0x7f, %al
jne 0x6515c
movq %r15, %rdi
pushq $0x25
popq %rsi
jmp 0x65137
movsbl %al, %esi
movq %r15, %rdi
callq 0x140b1
xorl %eax, %eax
jmp 0x65154
movq %rbx, %rdi
leaq 0x78966(%rip), %rsi     # 0xddab0
xorl %eax, %eax
callq 0xc007
pushq $-0x1
popq %rax
incq %r12
jmp 0x650cb
movsbl %al, %esi
movq %r15, %rdi
callq 0x140b1
xorl %eax, %eax
movq %r13, %r12
jmp 0x65154
addq $0x8, %rsp
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
retq
movq 0xc8e34(%rip), %rax     # 0x12dfb8
movq (%rax), %rdi
leaq 0x64ed8(%rip), %rsi     # 0xca066
leaq 0x788fe(%rip), %rdx     # 0xdda93
leaq 0x788e6(%rip), %rcx     # 0xdda82
leaq 0x788ae(%rip), %r8      # 0xdda51
pushq $0x70
jmp 0x651cf
movq 0xc8e0a(%rip), %rax     # 0x12dfb8
movq (%rax), %rdi
leaq 0x64eae(%rip), %rsi     # 0xca066
leaq 0x6549a(%rip), %rdx     # 0xca659
leaq 0x788bc(%rip), %rcx     # 0xdda82
leaq 0x78884(%rip), %r8      # 0xdda51
pushq $0x6f
popq %r9
xorl %eax, %eax
callq 0xb8c0
callq 0xb300
// File: /workspace/github_c_makefile_star2_O2/genometools[P]genometools/src/extended/gff3_output.c
// Function: gt_gff3_output_leading
void gt_gff3_output_leading(GtFeatureNode *fn, GtFile *outfp)
{
  GtGenomeNode *gn;
  gt_assert(fn);
  gn = (GtGenomeNode*) fn;
  gt_file_xprintf(outfp, "%s\t%s\t%s\t"GT_WU"\t"GT_WU"\t",
                     gt_str_get(gt_genome_node_get_seqid(gn)),
                     gt_feature_node_get_source(fn),
                     gt_feature_node_get_type(fn),
                     gt_genome_node_get_start(gn),
                     gt_genome_node_get_end(gn));
  if (gt_feature_node_score_is_defined(fn))
    gt_file_xprintf(outfp, "%.3g", gt_feature_node_get_score(fn));
  else
    gt_file_xfputc('.', outfp);
  gt_file_xprintf(outfp, "\t%c\t%c\t",
                     GT_STRAND_CHARS[gt_feature_node_get_strand(fn)],
                     GT_PHASE_CHARS[gt_feature_node_get_phase(fn)]);
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
pushq %rax
testq %rdi, %rdi
je 0x65781
movq %rsi, %rbx
movq %rdi, %r14
callq 0x1c31a
movq %rax, %rdi
callq 0x143d2
movq %rax, %r15
movq %r14, %rdi
callq 0x197b1
movq %rax, %r12
movq %r14, %rdi
callq 0x19528
movq %rax, %r13
movq %r14, %rdi
callq 0x1c3bf
movq %rax, %rbp
movq %r14, %rdi
callq 0x1c415
movq %rax, (%rsp)
leaq 0x78658(%rip), %rsi     # 0xddd42
movq %rbx, %rdi
movq %r15, %rdx
movq %r12, %rcx
movq %r13, %r8
movq %rbp, %r9
xorl %eax, %eax
callq 0x542da
movq %r14, %rdi
callq 0x195ce
testb %al, %al
je 0x6572b
movq %r14, %rdi
callq 0x19c2e
cvtss2sd %xmm0, %xmm0
leaq 0x78635(%rip), %rsi     # 0xddd54
movq %rbx, %rdi
movb $0x1, %al
callq 0x542da
jmp 0x65736
pushq $0x2e
popq %rdi
movq %rbx, %rsi
callq 0x54619
movq %r14, %rdi
callq 0x18f89
movl %eax, %eax
leaq 0x663fd(%rip), %rcx     # 0xcbb44
movsbl (%rax,%rcx), %ebp
movq %r14, %rdi
callq 0x19d90
movl %eax, %eax
leaq 0x66494(%rip), %rcx     # 0xcbbf0
movsbl (%rax,%rcx), %ecx
leaq 0x785f2(%rip), %rsi     # 0xddd59
movq %rbx, %rdi
movl %ebp, %edx
xorl %eax, %eax
addq $0x8, %rsp
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
jmp 0x542da
movq 0xc8830(%rip), %rax     # 0x12dfb8
movq (%rax), %rdi
leaq 0x648d4(%rip), %rsi     # 0xca066
leaq 0x77f0d(%rip), %rdx     # 0xdd6a6
leaq 0x78570(%rip), %rcx     # 0xddd10
leaq 0x78580(%rip), %r8      # 0xddd27
pushq $0x1a
popq %r9
xorl %eax, %eax
callq 0xb8c0
callq 0xb300