LLM4Binary/decompile-bench-makefile huggingface dataset:
// File: /workspace/github_c_makefile_star2_O0/genometools[P]genometools/src/tools/gt_fingerprint.c
// Function: show_duplicates
static int show_duplicates(GtStringDistri *sd, GtError *err)
{
  FingerprintInfo info;
  gt_error_check(err);
  gt_assert(sd);
  info.duplicates = 0;
  info.num_of_sequences = 0;
  gt_string_distri_foreach(sd, show_duplicate, &info);
  if (info.duplicates) {
    gt_error_set(err, "duplicates found: "GT_LLU" out of "GT_LLU" (%.3f%%)",
                 info.duplicates, info.num_of_sequences,
                 (((double) info.duplicates / info.num_of_sequences) * 100.0));
    return -1;
  }
  return 0;
}

// Assembly:
subq $0x28, %rsp
movq %rdi, 0x18(%rsp)
movq %rsi, 0x10(%rsp)
cmpq $0x0, 0x10(%rsp)
je 0x384fe
movq 0x10(%rsp), %rdi
callq 0xd8a60
testb $0x1, %al
jne 0x384c6
jmp 0x384fe
movq 0x603ad3(%rip), %rax    # 0x63bfa0
movq (%rax), %rdi
leaq 0x4ddb3c(%rip), %rsi    # 0x516013
leaq 0x4ddce1(%rip), %rdx    # 0x5161bf
leaq 0x4e5c9e(%rip), %rcx    # 0x51e183
leaq 0x4e5921(%rip), %r8     # 0x51de0d
movl $0xc2, %r9d
movb $0x0, %al
callq 0x199f0
callq 0x19370
jmp 0x38500
jmp 0x38502
cmpq $0x0, 0x18(%rsp)
jne 0x38542
movq 0x603a8f(%rip), %rax    # 0x63bfa0
movq (%rax), %rdi
leaq 0x4ddaf8(%rip), %rsi    # 0x516013
leaq 0x51d195(%rip), %rdx    # 0x5556b7
leaq 0x4e5c5a(%rip), %rcx    # 0x51e183
leaq 0x4e58dd(%rip), %r8     # 0x51de0d
movl $0xc3, %r9d
movb $0x0, %al
callq 0x199f0
callq 0x19370
jmp 0x38544
movq $0x0, (%rsp)
movq $0x0, 0x8(%rsp)
movq 0x18(%rsp), %rdi
leaq 0x24f(%rip), %rsi       # 0x387b0
movq %rsp, %rdx
callq 0x1205a0
cmpq $0x0, (%rsp)
je 0x385e5
movq 0x10(%rsp), %rdi
movq (%rsp), %rdx
movq 0x8(%rsp), %rcx
movq %rdx, %xmm0
movaps 0x4e03a6(%rip), %xmm3   # 0x518930
punpckldq %xmm3, %xmm0    # xmm0 = xmm0[0],xmm3[0],xmm0[1],xmm3[1]
movapd 0x4e03aa(%rip), %xmm2   # 0x518940
subpd %xmm2, %xmm0
movaps %xmm0, %xmm1
unpckhpd %xmm0, %xmm0            # xmm0 = xmm0[1,1]
addsd %xmm1, %xmm0
movq %rcx, %xmm1
punpckldq %xmm3, %xmm1    # xmm1 = xmm1[0],xmm3[0],xmm1[1],xmm3[1]
subpd %xmm2, %xmm1
movaps %xmm1, %xmm2
unpckhpd %xmm1, %xmm1            # xmm1 = xmm1[1,1]
addsd %xmm2, %xmm1
divsd %xmm1, %xmm0
movsd 0x4e226f(%rip), %xmm1   # 0x51a838
mulsd %xmm1, %xmm0
leaq 0x4e5bbf(%rip), %rsi    # 0x51e193
movb $0x1, %al
callq 0xd88c0
movl $0xffffffff, 0x24(%rsp) # imm = 0xFFFFFFFF
jmp 0x385ed
movl $0x0, 0x24(%rsp)
movl 0x24(%rsp), %eax
addq $0x28, %rsp
retq
nopw %cs:(%rax,%rax)
// File: /workspace/github_c_makefile_star2_O0/genometools[P]genometools/src/tools/gt_fingerprint.c
// Function: detect_collisions
static int detect_collisions(int num_of_seqfiles, const char **seqfiles,
                             GtError *err)
{
  GtStrArray *sequence_files;
  GtSeqCol *sc;
  GtUword i;
  int had_err = 0;
  gt_error_check(err);
  sequence_files = gt_str_array_new();
  for (i = 0; i < num_of_seqfiles; i++)
    gt_str_array_add_cstr(sequence_files, seqfiles[i]);
  if (!(sc = gt_bioseq_col_new(sequence_files, err)))
    had_err = -1;
  if (!had_err)
    had_err = detect_collisions_on_bsc((GtBioseqCol*) sc, err);
  gt_seq_col_delete(sc);
  gt_str_array_delete(sequence_files);
  return had_err;
}

// Assembly:
subq $0x38, %rsp
movl %edi, 0x34(%rsp)
movq %rsi, 0x28(%rsp)
movq %rdx, 0x20(%rsp)
movl $0x0, 0x4(%rsp)
cmpq $0x0, 0x20(%rsp)
je 0x3866a
movq 0x20(%rsp), %rdi
callq 0xd8a60
testb $0x1, %al
jne 0x38632
jmp 0x3866a
movq 0x603967(%rip), %rax    # 0x63bfa0
movq (%rax), %rdi
leaq 0x4dd9d0(%rip), %rsi    # 0x516013
leaq 0x4ddb75(%rip), %rdx    # 0x5161bf
leaq 0x4e5b76(%rip), %rcx    # 0x51e1c7
leaq 0x4e57b5(%rip), %r8     # 0x51de0d
movl $0x11a, %r9d            # imm = 0x11A
movb $0x0, %al
callq 0x199f0
callq 0x19370
jmp 0x3866c
callq 0x11f5c0
movq %rax, 0x18(%rsp)
movq $0x0, 0x8(%rsp)
movq 0x8(%rsp), %rax
movslq 0x34(%rsp), %rcx
cmpq %rcx, %rax
jae 0x386b6
movq 0x18(%rsp), %rdi
movq 0x28(%rsp), %rax
movq 0x8(%rsp), %rcx
movq (%rax,%rcx,8), %rsi
callq 0x11f720
movq 0x8(%rsp), %rax
addq $0x1, %rax
movq %rax, 0x8(%rsp)
jmp 0x3867f
movq 0x18(%rsp), %rdi
movq 0x20(%rsp), %rsi
callq 0x87f00
movq %rax, 0x10(%rsp)
cmpq $0x0, %rax
jne 0x386d8
movl $0xffffffff, 0x4(%rsp)  # imm = 0xFFFFFFFF
cmpl $0x0, 0x4(%rsp)
jne 0x386f2
movq 0x10(%rsp), %rdi
movq 0x20(%rsp), %rsi
callq 0x38820
movl %eax, 0x4(%rsp)
movq 0x10(%rsp), %rdi
callq 0x110aa0
movq 0x18(%rsp), %rdi
callq 0x11fd20
movl 0x4(%rsp), %eax
addq $0x38, %rsp
retq
nop
// File: /workspace/github_c_makefile_star2_O0/genometools[P]genometools/src/tools/gt_fingerprint.c
// Function: proc_superfluous_sequence
static void proc_superfluous_sequence(const char *string,
                                      GT_UNUSED GtUword occurrences,
                                      GT_UNUSED double probability, void *data)
{
  bool *comparisons_failed = data;
  gt_assert(string && occurrences && comparisons_failed);
  printf("%s only in sequence_file(s)\n", string);
  *comparisons_failed = true;
}

// Assembly:
subq $0x28, %rsp
movq %rdi, 0x20(%rsp)
movq %rsi, 0x18(%rsp)
movsd %xmm0, 0x10(%rsp)
movq %rdx, 0x8(%rsp)
movq 0x8(%rsp), %rax
movq %rax, (%rsp)
cmpq $0x0, 0x20(%rsp)
je 0x38749
cmpq $0x0, 0x18(%rsp)
je 0x38749
cmpq $0x0, (%rsp)
jne 0x38781
movq 0x603850(%rip), %rax    # 0x63bfa0
movq (%rax), %rdi
leaq 0x4dd8b9(%rip), %rsi    # 0x516013
leaq 0x4e59bf(%rip), %rdx    # 0x51e120
leaq 0x4e59e4(%rip), %rcx    # 0x51e14c
leaq 0x4e569e(%rip), %r8     # 0x51de0d
movl $0x88, %r9d
movb $0x0, %al
callq 0x199f0
callq 0x19370
jmp 0x38783
movq 0x20(%rsp), %rsi
leaq 0x4e59d7(%rip), %rdi    # 0x51e166
movb $0x0, %al
callq 0x19070
movq (%rsp), %rax
movb $0x1, (%rax)
addq $0x28, %rsp
retq
nopw %cs:(%rax,%rax)
// File: /workspace/github_c_makefile_star2_O0/genometools[P]genometools/src/tools/gt_fingerprint.c
// Function: show_duplicate
static void show_duplicate(const char *fingerprint, GtUword occurrences,
                           GT_UNUSED double probability, void *data)
{
  FingerprintInfo *info = data;
  if (occurrences > 1) {
    printf("%s\t"GT_WU"\n", fingerprint, occurrences);
    info->duplicates += occurrences - 1;
  }
  info->num_of_sequences += occurrences;
}

// Assembly:
subq $0x28, %rsp
movq %rdi, 0x20(%rsp)
movq %rsi, 0x18(%rsp)
movsd %xmm0, 0x10(%rsp)
movq %rdx, 0x8(%rsp)
movq 0x8(%rsp), %rax
movq %rax, (%rsp)
cmpq $0x1, 0x18(%rsp)
jbe 0x38805
movq 0x20(%rsp), %rsi
movq 0x18(%rsp), %rdx
leaq 0x4e59d4(%rip), %rdi    # 0x51e1bf
movb $0x0, %al
callq 0x19070
movq 0x18(%rsp), %rcx
subq $0x1, %rcx
movq (%rsp), %rax
addq (%rax), %rcx
movq %rcx, (%rax)
movq 0x18(%rsp), %rcx
movq (%rsp), %rax
addq 0x8(%rax), %rcx
movq %rcx, 0x8(%rax)
addq $0x28, %rsp
retq
nopl (%rax,%rax)
// File: /workspace/github_c_makefile_star2_O0/genometools[P]genometools/src/tools/gt_gdiffcalc.c
// Function: gt_gdiffcalc_arguments_new
static void* gt_gdiffcalc_arguments_new(void)
{
  GtGenomediffArguments *arguments = gt_calloc((size_t) 1, sizeof *arguments);
  arguments->indexname = gt_str_new();
  arguments->unitfile = gt_str_new();
  arguments->indextype = gt_str_new();
  arguments->filenames = gt_str_array_new();
  arguments->with_esa = arguments->with_pck = false;
  return arguments;
}

// Assembly:
pushq %rax
movl $0x1, %edi
movl $0x70, %esi
leaq 0x4e5506(%rip), %rdx    # 0x51e268
movl $0x2e, %ecx
callq 0xe83c0
movq %rax, (%rsp)
callq 0x11d4a0
movq %rax, %rcx
movq (%rsp), %rax
movq %rcx, 0x50(%rax)
callq 0x11d4a0
movq %rax, %rcx
movq (%rsp), %rax
movq %rcx, 0x60(%rax)
callq 0x11d4a0
movq %rax, %rcx
movq (%rsp), %rax
movq %rcx, 0x58(%rax)
callq 0x11f5c0
movq %rax, %rcx
movq (%rsp), %rax
movq %rcx, 0x68(%rax)
movq (%rsp), %rax
movb $0x0, 0x3(%rax)
movq (%rsp), %rax
movb $0x0, 0x2(%rax)
movq (%rsp), %rax
popq %rcx
retq
nopw %cs:(%rax,%rax)
// File: /workspace/github_c_makefile_star2_O0/genometools[P]genometools/src/tools/gt_gdiffcalc.c
// Function: gt_gdiffcalc_arguments_delete
static void gt_gdiffcalc_arguments_delete(void *tool_arguments)
{
  GtGenomediffArguments *arguments = tool_arguments;
  if (!arguments) return;
  gt_str_delete(arguments->indexname);
  gt_str_delete(arguments->unitfile);
  gt_str_delete(arguments->indextype);
  gt_str_array_delete(arguments->filenames);
  gt_option_delete(arguments->ref_unitfile);
  gt_encseq_options_delete(arguments->loadopts);
  gt_index_options_delete(arguments->idxopts);
  gt_free(arguments);
}

// Assembly:
subq $0x18, %rsp
movq %rdi, 0x10(%rsp)
movq 0x10(%rsp), %rax
movq %rax, 0x8(%rsp)
cmpq $0x0, 0x8(%rsp)
jne 0x38ded
jmp 0x38e65
movq 0x8(%rsp), %rax
movq 0x50(%rax), %rdi
callq 0x11f560
movq 0x8(%rsp), %rax
movq 0x60(%rax), %rdi
callq 0x11f560
movq 0x8(%rsp), %rax
movq 0x58(%rax), %rdi
callq 0x11f560
movq 0x8(%rsp), %rax
movq 0x68(%rax), %rdi
callq 0x11fd20
movq 0x8(%rsp), %rax
movq 0x48(%rax), %rdi
callq 0xf5df0
movq 0x8(%rsp), %rax
movq 0x38(%rax), %rdi
callq 0xd82c0
movq 0x8(%rsp), %rax
movq 0x40(%rax), %rdi
callq 0x25c790
movq 0x8(%rsp), %rdi
leaq 0x4e540d(%rip), %rsi    # 0x51e268
movl $0x42, %edx
callq 0xe88c0
addq $0x18, %rsp
retq
nopw (%rax,%rax)
// File: /workspace/github_c_makefile_star2_O0/genometools[P]genometools/src/tools/gt_gdiffcalc.c
// Function: gt_gdiffcalc_arguments_check
static int gt_gdiffcalc_arguments_check(GT_UNUSED int rest_argc,
                                       void *tool_arguments,
                                       GT_UNUSED GtError *err)
{
  GtGenomediffArguments *arguments = tool_arguments;
  int had_err = 0;
  gt_error_check(err);
  gt_assert(arguments);

  gt_assert(rest_argc == 1);
  if (!had_err)
    arguments->with_units = gt_option_is_set(arguments->ref_unitfile);

  return had_err;
}

// Assembly:
subq $0x28, %rsp
movl %edi, 0x24(%rsp)
movq %rsi, 0x18(%rsp)
movq %rdx, 0x10(%rsp)
movq 0x18(%rsp), %rax
movq %rax, 0x8(%rsp)
movl $0x0, 0x4(%rsp)
cmpq $0x0, 0x10(%rsp)
je 0x391d4
movq 0x10(%rsp), %rdi
callq 0xd8a60
testb $0x1, %al
jne 0x3919c
jmp 0x391d4
movq 0x602dfd(%rip), %rax    # 0x63bfa0
movq (%rax), %rdi
leaq 0x4dce66(%rip), %rsi    # 0x516013
leaq 0x4dd00b(%rip), %rdx    # 0x5161bf
leaq 0x4e5305(%rip), %rcx    # 0x51e4c0
leaq 0x4e50a6(%rip), %r8     # 0x51e268
movl $0xac, %r9d
movb $0x0, %al
callq 0x199f0
callq 0x19370
jmp 0x391d6
jmp 0x391d8
cmpq $0x0, 0x8(%rsp)
jne 0x39218
movq 0x602db9(%rip), %rax    # 0x63bfa0
movq (%rax), %rdi
leaq 0x4dce22(%rip), %rsi    # 0x516013
leaq 0x541967(%rip), %rdx    # 0x57ab5f
leaq 0x4e52c1(%rip), %rcx    # 0x51e4c0
leaq 0x4e5062(%rip), %r8     # 0x51e268
movl $0xad, %r9d
movb $0x0, %al
callq 0x199f0
callq 0x19370
jmp 0x3921a
jmp 0x3921c
cmpl $0x1, 0x24(%rsp)
je 0x3925b
movq 0x602d76(%rip), %rax    # 0x63bfa0
movq (%rax), %rdi
leaq 0x4dcddf(%rip), %rsi    # 0x516013
leaq 0x4e52a2(%rip), %rdx    # 0x51e4dd
leaq 0x4e527e(%rip), %rcx    # 0x51e4c0
leaq 0x4e501f(%rip), %r8     # 0x51e268
movl $0xaf, %r9d
movb $0x0, %al
callq 0x199f0
callq 0x19370
jmp 0x3925d
cmpl $0x0, 0x4(%rsp)
jne 0x3927f
movq 0x8(%rsp), %rax
movq 0x48(%rax), %rdi
callq 0xf74a0
movb %al, %cl
movq 0x8(%rsp), %rax
andb $0x1, %cl
movb %cl, 0x4(%rax)
movl 0x4(%rsp), %eax
addq $0x28, %rsp
retq
nopl (%rax,%rax)
// File: /workspace/github_c_makefile_star2_O0/genometools[P]genometools/src/tools/gt_genomediff.c
// Function: gt_genomediff_arguments_new
static void* gt_genomediff_arguments_new(void)
{
  GtGenomediffArguments *arguments = gt_calloc((size_t) 1, sizeof *arguments);
  arguments->indexname = gt_str_new();
  arguments->unitfile = gt_str_new();
  arguments->indextype = gt_str_new();
  arguments->filenames = gt_str_array_new();
  arguments->with_esa = arguments->with_pck = false;
  return arguments;
}

// Assembly:
pushq %rax
movl $0x1, %edi
movl $0x70, %esi
leaq 0x4e48b4(%rip), %rdx    # 0x51e606
movl $0x2c, %ecx
callq 0xe83c0
movq %rax, (%rsp)
callq 0x11d4a0
movq %rax, %rcx
movq (%rsp), %rax
movq %rcx, 0x50(%rax)
callq 0x11d4a0
movq %rax, %rcx
movq (%rsp), %rax
movq %rcx, 0x60(%rax)
callq 0x11d4a0
movq %rax, %rcx
movq (%rsp), %rax
movq %rcx, 0x58(%rax)
callq 0x11f5c0
movq %rax, %rcx
movq (%rsp), %rax
movq %rcx, 0x68(%rax)
movq (%rsp), %rax
movb $0x0, 0x3(%rax)
movq (%rsp), %rax
movb $0x0, 0x2(%rax)
movq (%rsp), %rax
popq %rcx
retq
nopw %cs:(%rax,%rax)
// File: /workspace/github_c_makefile_star2_O0/genometools[P]genometools/src/tools/gt_gff3.c
// Function: gt_gff3_arguments_new
static void* gt_gff3_arguments_new(void)
{
  GFF3Arguments *arguments = gt_calloc(1, sizeof *arguments);
  arguments->newsource = gt_str_new();
  arguments->offsetfile = gt_str_new();
  arguments->tci = gt_typecheck_info_new();
  arguments->xci = gt_xrfcheck_info_new();
  arguments->ofi = gt_output_file_info_new();
  return arguments;
}

// Assembly:
pushq %rax
movl $0x1, %edi
movl $0x50, %esi
leaq 0x4e3a76(%rip), %rdx    # 0x51e9e8
movl $0x44, %ecx
callq 0xe83c0
movq %rax, (%rsp)
callq 0x11d4a0
movq %rax, %rcx
movq (%rsp), %rax
movq %rcx, 0x20(%rax)
callq 0x11d4a0
movq %rax, %rcx
movq (%rsp), %rax
movq %rcx, 0x18(%rax)
callq 0x1f4840
movq %rax, %rcx
movq (%rsp), %rax
movq %rcx, 0x30(%rax)
callq 0x1fa780
movq %rax, %rcx
movq (%rsp), %rax
movq %rcx, 0x38(%rax)
callq 0xf7d20
movq %rax, %rcx
movq (%rsp), %rax
movq %rcx, 0x40(%rax)
movq (%rsp), %rax
popq %rcx
retq
nopw %cs:(%rax,%rax)
// File: /workspace/github_c_makefile_star2_O0/genometools[P]genometools/src/tools/gt_gff3.c
// Function: gt_gff3_arguments_delete
static void gt_gff3_arguments_delete(void *tool_arguments)
{
  GFF3Arguments *arguments = tool_arguments;
  if (!arguments) return;
  gt_file_delete(arguments->outfp);
  gt_str_delete(arguments->newsource);
  gt_output_file_info_delete(arguments->ofi);
  gt_typecheck_info_delete(arguments->tci);
  gt_xrfcheck_info_delete(arguments->xci);
  gt_str_delete(arguments->offsetfile);
  gt_free(arguments);
}

// Assembly:
subq $0x18, %rsp
movq %rdi, 0x10(%rsp)
movq 0x10(%rsp), %rax
movq %rax, 0x8(%rsp)
cmpq $0x0, 0x8(%rsp)
jne 0x3affd
jmp 0x3b067
movq 0x8(%rsp), %rax
movq 0x48(%rax), %rdi
callq 0xde430
movq 0x8(%rsp), %rax
movq 0x20(%rax), %rdi
callq 0x11f560
movq 0x8(%rsp), %rax
movq 0x40(%rax), %rdi
callq 0xf8210
movq 0x8(%rsp), %rax
movq 0x30(%rax), %rdi
callq 0x1f4880
movq 0x8(%rsp), %rax
movq 0x38(%rax), %rdi
callq 0x1fa7c0
movq 0x8(%rsp), %rax
movq 0x18(%rax), %rdi
callq 0x11f560
movq 0x8(%rsp), %rdi
leaq 0x4e398b(%rip), %rsi    # 0x51e9e8
movl $0x57, %edx
callq 0xe88c0
addq $0x18, %rsp
retq
nopl (%rax)
// File: /workspace/github_c_makefile_star2_O0/genometools[P]genometools/src/tools/gt_gff3_to_gtf.c
// Function: gt_gff3_to_gtf_arguments_delete
static void gt_gff3_to_gtf_arguments_delete(void *tool_arguments)
{
  GFF3ToGTFArguments *arguments = tool_arguments;
  if (!arguments) return;
  gt_file_delete(arguments->outfp);
  gt_output_file_info_delete(arguments->ofi);
  gt_free(arguments);
}

// Assembly:
subq $0x18, %rsp
movq %rdi, 0x10(%rsp)
movq 0x10(%rsp), %rax
movq %rax, 0x8(%rsp)
cmpq $0x0, 0x8(%rsp)
jne 0x3bc3d
jmp 0x3bc6e
movq 0x8(%rsp), %rax
movq 0x8(%rax), %rdi
callq 0xde430
movq 0x8(%rsp), %rax
movq (%rax), %rdi
callq 0xf8210
movq 0x8(%rsp), %rdi
leaq 0x4e33f0(%rip), %rsi    # 0x51f054
movl $0x2c, %edx
callq 0xe88c0
addq $0x18, %rsp
retq
nopw %cs:(%rax,%rax)
// File: /workspace/github_c_makefile_star2_O0/genometools[P]genometools/src/tools/gt_gff3_to_gtf.c
// Function: gt_gff3_to_gtf_option_parser_new
static GtOptionParser* gt_gff3_to_gtf_option_parser_new(void *tool_arguments)
{
  GFF3ToGTFArguments *arguments = tool_arguments;
  GtOptionParser *op;
  op = gt_option_parser_new("[GFF3_file ...]",
                            "Parse GFF3 file(s) and show them as GTF2.2.");
  gt_output_file_info_register_options(arguments->ofi, op, &arguments->outfp);
  return op;
}

// Assembly:
subq $0x18, %rsp
movq %rdi, 0x10(%rsp)
movq 0x10(%rsp), %rax
movq %rax, 0x8(%rsp)
leaq 0x4df8b5(%rip), %rdi    # 0x51b54f
leaq 0x4e33ce(%rip), %rsi    # 0x51f06f
callq 0xf1420
movq %rax, (%rsp)
movq 0x8(%rsp), %rax
movq (%rax), %rdi
movq (%rsp), %rsi
movq 0x8(%rsp), %rdx
addq $0x8, %rdx
callq 0xf7d50
movq (%rsp), %rax
addq $0x18, %rsp
retq
nopl (%rax)
// File: /workspace/github_c_makefile_star2_O0/genometools[P]genometools/src/tools/gt_gff3_to_gtf.c
// Function: gt_gff3_to_gtf_runner
static int gt_gff3_to_gtf_runner(int argc, const char **argv, int parsed_args,
                                 void *tool_arguments, GtError *err)
{
  GFF3ToGTFArguments *arguments = tool_arguments;
  GtNodeStream *gff3_in_stream = NULL, *gtf_out_stream = NULL;
  int had_err;

  gt_error_check(err);
  gt_assert(arguments);

  /* create a gff3 input stream */
  gff3_in_stream = gt_gff3_in_stream_new_unsorted(argc - parsed_args,
                                                  argv + parsed_args);

  /* create a gtf output stream */
  gtf_out_stream = gt_gtf_out_stream_new(gff3_in_stream, arguments->outfp);

  /* pull the features through the stream and free them afterwards */
  had_err = gt_node_stream_pull(gtf_out_stream, err);

  /* free */
  gt_node_stream_delete(gff3_in_stream);
  gt_node_stream_delete(gtf_out_stream);

  return had_err;
}

// Assembly:
subq $0x48, %rsp
movl %edi, 0x44(%rsp)
movq %rsi, 0x38(%rsp)
movl %edx, 0x34(%rsp)
movq %rcx, 0x28(%rsp)
movq %r8, 0x20(%rsp)
movq 0x28(%rsp), %rax
movq %rax, 0x18(%rsp)
movq $0x0, 0x10(%rsp)
movq $0x0, 0x8(%rsp)
cmpq $0x0, 0x20(%rsp)
je 0x3bd57
movq 0x20(%rsp), %rdi
callq 0xd8a60
testb $0x1, %al
jne 0x3bd1f
jmp 0x3bd57
movq 0x60027a(%rip), %rax    # 0x63bfa0
movq (%rax), %rdi
leaq 0x4da2e3(%rip), %rsi    # 0x516013
leaq 0x4da488(%rip), %rdx    # 0x5161bf
leaq 0x4e335d(%rip), %rcx    # 0x51f09b
leaq 0x4e330f(%rip), %r8     # 0x51f054
movl $0x40, %r9d
movb $0x0, %al
callq 0x199f0
callq 0x19370
jmp 0x3bd59
jmp 0x3bd5b
cmpq $0x0, 0x18(%rsp)
jne 0x3bd9b
movq 0x600236(%rip), %rax    # 0x63bfa0
movq (%rax), %rdi
leaq 0x4da29f(%rip), %rsi    # 0x516013
leaq 0x53ede4(%rip), %rdx    # 0x57ab5f
leaq 0x4e3319(%rip), %rcx    # 0x51f09b
leaq 0x4e32cb(%rip), %r8     # 0x51f054
movl $0x41, %r9d
movb $0x0, %al
callq 0x199f0
callq 0x19370
jmp 0x3bd9d
movl 0x44(%rsp), %edi
subl 0x34(%rsp), %edi
movq 0x38(%rsp), %rsi
movslq 0x34(%rsp), %rax
shlq $0x3, %rax
addq %rax, %rsi
callq 0x1746b0
movq %rax, 0x10(%rsp)
movq 0x10(%rsp), %rdi
movq 0x18(%rsp), %rax
movq 0x8(%rax), %rsi
callq 0x1824b0
movq %rax, 0x8(%rsp)
movq 0x8(%rsp), %rdi
movq 0x20(%rsp), %rsi
callq 0x1b1f90
movl %eax, 0x4(%rsp)
movq 0x10(%rsp), %rdi
callq 0x1b1cb0
movq 0x8(%rsp), %rdi
callq 0x1b1cb0
movl 0x4(%rsp), %eax
addq $0x48, %rsp
retq
nopl (%rax,%rax)
// File: /workspace/github_c_makefile_star2_O0/genometools[P]genometools/src/tools/gt_gff3validator.c
// Function: gt_gff3validator_arguments_new
static void* gt_gff3validator_arguments_new(void)
{
  GFF3ValidatorArguments *arguments = gt_calloc(1, sizeof *arguments);
  arguments->tci = gt_typecheck_info_new();
  arguments->xci = gt_xrfcheck_info_new();
  return arguments;
}

// Assembly:
pushq %rax
movl $0x1, %edi
movl $0x18, %esi
leaq 0x4e325f(%rip), %rdx    # 0x51f0b1
movl $0x23, %ecx
callq 0xe83c0
movq %rax, (%rsp)
callq 0x1f4840
movq %rax, %rcx
movq (%rsp), %rax
movq %rcx, (%rax)
callq 0x1fa780
movq %rax, %rcx
movq (%rsp), %rax
movq %rcx, 0x8(%rax)
movq (%rsp), %rax
popq %rcx
retq
nopw %cs:(%rax,%rax)
// File: /workspace/github_c_makefile_star2_O0/genometools[P]genometools/src/tools/gt_gff3validator.c
// Function: gt_gff3validator_arguments_delete
static void gt_gff3validator_arguments_delete(void *tool_arguments)
{
  GFF3ValidatorArguments *arguments = tool_arguments;
  if (!arguments) return;
  gt_typecheck_info_delete(arguments->tci);
  gt_xrfcheck_info_delete(arguments->xci);
  gt_free(arguments);
}

// Assembly:
subq $0x18, %rsp
movq %rdi, 0x10(%rsp)
movq 0x10(%rsp), %rax
movq %rax, 0x8(%rsp)
cmpq $0x0, 0x8(%rsp)
jne 0x3bead
jmp 0x3bede
movq 0x8(%rsp), %rax
movq (%rax), %rdi
callq 0x1f4880
movq 0x8(%rsp), %rax
movq 0x8(%rax), %rdi
callq 0x1fa7c0
movq 0x8(%rsp), %rdi
leaq 0x4e31dd(%rip), %rsi    # 0x51f0b1
movl $0x2f, %edx
callq 0xe88c0
addq $0x18, %rsp
retq
nopw %cs:(%rax,%rax)
// File: /workspace/github_c_makefile_star2_O0/genometools[P]genometools/src/tools/gt_gff3validator.c
// Function: gt_gff3validator_option_parser_new
static GtOptionParser* gt_gff3validator_option_parser_new(void *tool_arguments)
{
  GFF3ValidatorArguments *arguments = tool_arguments;
  GtOptionParser *op;
  GtOption *option;
  gt_assert(arguments);

  /* init */
  op = gt_option_parser_new("[option ...] [GFF3_file ...]",
                         "Strictly validate given GFF3 files.");

  /* typecheck options */
  gt_typecheck_info_register_options(arguments->tci, op);

  /* xrfcheck options */
  gt_xrfcheck_info_register_options(arguments->xci, op);

  /* -strict */
  option = gt_option_new_bool("strict", "be very strict during GFF3 parsing "
                              "(stricter than the specification requires)",
                              &arguments->strict, false);
  gt_option_is_development_option(option);
  gt_option_parser_add_option(op, option);

  return op;
}

// Assembly:
subq $0x28, %rsp
movq %rdi, 0x20(%rsp)
movq 0x20(%rsp), %rax
movq %rax, 0x18(%rsp)
cmpq $0x0, 0x18(%rsp)
jne 0x3bf43
movq 0x60008e(%rip), %rax    # 0x63bfa0
movq (%rax), %rdi
leaq 0x4da0f7(%rip), %rsi    # 0x516013
leaq 0x53ec3c(%rip), %rdx    # 0x57ab5f
leaq 0x4e31a4(%rip), %rcx    # 0x51f0ce
leaq 0x4e3180(%rip), %r8     # 0x51f0b1
movl $0x37, %r9d
movb $0x0, %al
callq 0x199f0
callq 0x19370
jmp 0x3bf45
leaq 0x4df5f6(%rip), %rdi    # 0x51b542
leaq 0x4e319e(%rip), %rsi    # 0x51f0f1
callq 0xf1420
movq %rax, 0x10(%rsp)
movq 0x18(%rsp), %rax
movq (%rax), %rdi
movq 0x10(%rsp), %rsi
callq 0x1f4a10
movq 0x18(%rsp), %rax
movq 0x8(%rax), %rdi
movq 0x10(%rsp), %rsi
callq 0x1fa800
movq 0x18(%rsp), %rdx
addq $0x10, %rdx
leaq 0x51616a(%rip), %rdi    # 0x5520fc
leaq 0x4e2bc6(%rip), %rsi    # 0x51eb5f
xorl %ecx, %ecx
callq 0xf5f20
movq %rax, 0x8(%rsp)
movq 0x8(%rsp), %rdi
callq 0xf7040
movq 0x10(%rsp), %rdi
movq 0x8(%rsp), %rsi
callq 0xf1600
movq 0x10(%rsp), %rax
addq $0x28, %rsp
retq
nopl (%rax,%rax)
// File: /workspace/github_c_makefile_star2_O0/genometools[P]genometools/src/tools/gt_gtf_to_gff3.c
// Function: gt_gtf_to_gff3_arguments_delete
static void gt_gtf_to_gff3_arguments_delete(void *tool_arguments)
{
  GTFToGFF3Arguments *arguments = tool_arguments;
  if (!arguments) return;
  gt_file_delete(arguments->outfp);
  gt_output_file_info_delete(arguments->ofi);
  gt_free(arguments);
}

// Assembly:
subq $0x18, %rsp
movq %rdi, 0x10(%rsp)
movq 0x10(%rsp), %rax
movq %rax, 0x8(%rsp)
cmpq $0x0, 0x8(%rsp)
jne 0x3c27d
jmp 0x3c2af
movq 0x8(%rsp), %rax
movq 0x10(%rax), %rdi
callq 0xde430
movq 0x8(%rsp), %rax
movq 0x8(%rax), %rdi
callq 0xf8210
movq 0x8(%rsp), %rdi
leaq 0x4e2e9d(%rip), %rsi    # 0x51f142
movl $0x2f, %edx
callq 0xe88c0
addq $0x18, %rsp
retq
nopw %cs:(%rax,%rax)
// File: /workspace/github_c_makefile_star2_O0/genometools[P]genometools/src/tools/gt_gtf_to_gff3.c
// Function: gt_gtf_to_gff3_option_parser_new
static GtOptionParser* gt_gtf_to_gff3_option_parser_new(void *tool_arguments)
{
  GTFToGFF3Arguments *arguments = tool_arguments;
  GtOptionParser *op;
  GtOption *option;
  gt_assert(arguments);

  op = gt_option_parser_new("[GTF_file]",
                            "Parse GTF2.2 file and convert it to GFF3.");

  /* -tidy */
  option = gt_option_new_bool("tidy", "try to tidy the GTF file up during "
                              "parsing", &arguments->tidy, false);
  gt_option_parser_add_option(op, option);

  /* output file options */
  gt_output_file_info_register_options(arguments->ofi, op, &arguments->outfp);

  gt_option_parser_set_max_args(op, 1);

  return op;
}

// Assembly:
subq $0x28, %rsp
movq %rdi, 0x20(%rsp)
movq 0x20(%rsp), %rax
movq %rax, 0x18(%rsp)
cmpq $0x0, 0x18(%rsp)
jne 0x3c313
movq 0x5ffcbe(%rip), %rax    # 0x63bfa0
movq (%rax), %rdi
leaq 0x4d9d27(%rip), %rsi    # 0x516013
leaq 0x53e86c(%rip), %rdx    # 0x57ab5f
leaq 0x4e2e63(%rip), %rcx    # 0x51f15d
leaq 0x4e2e41(%rip), %r8     # 0x51f142
movl $0x37, %r9d
movb $0x0, %al
callq 0x199f0
callq 0x19370
jmp 0x3c315
leaq 0x4e2e62(%rip), %rdi    # 0x51f17e
leaq 0x4e2e66(%rip), %rsi    # 0x51f189
callq 0xf1420
movq %rax, 0x10(%rsp)
movq 0x18(%rsp), %rdx
leaq 0x515d89(%rip), %rdi    # 0x5520c2
leaq 0x4e2e73(%rip), %rsi    # 0x51f1b3
xorl %ecx, %ecx
callq 0xf5f20
movq %rax, 0x8(%rsp)
movq 0x10(%rsp), %rdi
movq 0x8(%rsp), %rsi
callq 0xf1600
movq 0x18(%rsp), %rax
movq 0x8(%rax), %rdi
movq 0x10(%rsp), %rsi
movq 0x18(%rsp), %rdx
addq $0x10, %rdx
callq 0xf7d50
movq 0x10(%rsp), %rdi
movl $0x1, %esi
callq 0xf29e0
movq 0x10(%rsp), %rax
addq $0x28, %rsp
retq
// File: /workspace/github_c_makefile_star2_O0/genometools[P]genometools/src/tools/gt_gtf_to_gff3.c
// Function: gt_gtf_to_gff3_runner
static int gt_gtf_to_gff3_runner(GT_UNUSED int argc, const char **argv,
                                 int parsed_args, void *tool_arguments,
                                 GtError *err)
{
  GTFToGFF3Arguments *arguments = tool_arguments;
  GtNodeStream *gtf_in_stream = NULL, *gff3_out_stream = NULL;
  int had_err;

  gt_error_check(err);
  gt_assert(arguments);

  /* create a GTF input stream */
  gtf_in_stream = gt_gtf_in_stream_new(argv[parsed_args]);
  if (arguments->tidy)
    gt_gtf_in_stream_enable_tidy_mode(gtf_in_stream);

  /* create a GFF3 output stream */
  gff3_out_stream = gt_gff3_out_stream_new(gtf_in_stream, arguments->outfp);

  /* pull the features through the stream and free them afterwards */
  had_err = gt_node_stream_pull(gff3_out_stream, err);

  /* free */
  gt_node_stream_delete(gff3_out_stream);
  gt_node_stream_delete(gtf_in_stream);

  return had_err;
}

// Assembly:
subq $0x48, %rsp
movl %edi, 0x44(%rsp)
movq %rsi, 0x38(%rsp)
movl %edx, 0x34(%rsp)
movq %rcx, 0x28(%rsp)
movq %r8, 0x20(%rsp)
movq 0x28(%rsp), %rax
movq %rax, 0x18(%rsp)
movq $0x0, 0x10(%rsp)
movq $0x0, 0x8(%rsp)
cmpq $0x0, 0x20(%rsp)
je 0x3c417
movq 0x20(%rsp), %rdi
callq 0xd8a60
testb $0x1, %al
jne 0x3c3df
jmp 0x3c417
movq 0x5ffbba(%rip), %rax    # 0x63bfa0
movq (%rax), %rdi
leaq 0x4d9c23(%rip), %rsi    # 0x516013
leaq 0x4d9dc8(%rip), %rdx    # 0x5161bf
leaq 0x4e2de0(%rip), %rcx    # 0x51f1de
leaq 0x4e2d3d(%rip), %r8     # 0x51f142
movl $0x51, %r9d
movb $0x0, %al
callq 0x199f0
callq 0x19370
jmp 0x3c419
jmp 0x3c41b
cmpq $0x0, 0x18(%rsp)
jne 0x3c45b
movq 0x5ffb76(%rip), %rax    # 0x63bfa0
movq (%rax), %rdi
leaq 0x4d9bdf(%rip), %rsi    # 0x516013
leaq 0x53e724(%rip), %rdx    # 0x57ab5f
leaq 0x4e2d9c(%rip), %rcx    # 0x51f1de
leaq 0x4e2cf9(%rip), %r8     # 0x51f142
movl $0x52, %r9d
movb $0x0, %al
callq 0x199f0
callq 0x19370
jmp 0x3c45d
movq 0x38(%rsp), %rax
movslq 0x34(%rsp), %rcx
movq (%rax,%rcx,8), %rdi
callq 0x182240
movq %rax, 0x10(%rsp)
movq 0x18(%rsp), %rax
testb $0x1, (%rax)
je 0x3c489
movq 0x10(%rsp), %rdi
callq 0x1822e0
movq 0x10(%rsp), %rdi
movq 0x18(%rsp), %rax
movq 0x10(%rax), %rsi
callq 0x176d50
movq %rax, 0x8(%rsp)
movq 0x8(%rsp), %rdi
movq 0x20(%rsp), %rsi
callq 0x1b1f90
movl %eax, 0x4(%rsp)
movq 0x8(%rsp), %rdi
callq 0x1b1cb0
movq 0x10(%rsp), %rdi
callq 0x1b1cb0
movl 0x4(%rsp), %eax
addq $0x48, %rsp
retq
nopw %cs:(%rax,%rax)
nopl (%rax,%rax)
// File: /workspace/github_c_makefile_star2_O0/genometools[P]genometools/src/tools/gt_guessprot.c
// Function: gt_guessprot
int gt_guessprot(int argc, const char **argv, GtError *err)
{
  int i, parsed_args, retval;
  GtStrArray *filenametab;

  gt_error_check(err);

  switch (parse_options(&parsed_args, argc, argv, err)) {
    case GT_OPTION_PARSER_OK: break;
    case GT_OPTION_PARSER_ERROR: return -1;
    case GT_OPTION_PARSER_REQUESTS_EXIT: return 0;
  }

  filenametab = gt_str_array_new();
  for (i=parsed_args; i < argc; i++)
  {
    gt_str_array_add_cstr(filenametab,argv[i]);
  }
  retval = gt_files_guess_if_protein_sequences(filenametab,err);
  gt_str_array_delete(filenametab);
  if (retval < 0)
  {
    return -1;
  }
  if (retval == 1)
  {
    /*@ignore@*/
    exit(EXIT_FAILURE); /* guess it is a protein sequence */
    /*@end@*/

  } else
  {
    return 0;
  }
}

// Assembly:
subq $0x38, %rsp
movl %edi, 0x30(%rsp)
movq %rsi, 0x28(%rsp)
movq %rdx, 0x20(%rsp)
cmpq $0x0, 0x20(%rsp)
je 0x3c542
movq 0x20(%rsp), %rdi
callq 0xd8a60
testb $0x1, %al
jne 0x3c50a
jmp 0x3c542
movq 0x5ffa8f(%rip), %rax    # 0x63bfa0
movq (%rax), %rdi
leaq 0x4d9af8(%rip), %rsi    # 0x516013
leaq 0x4d9c9d(%rip), %rdx    # 0x5161bf
leaq 0x4e2ccb(%rip), %rcx    # 0x51f1f4
leaq 0x4e2cd1(%rip), %r8     # 0x51f201
movl $0x2c, %r9d
movb $0x0, %al
callq 0x199f0
callq 0x19370
jmp 0x3c544
movl 0x30(%rsp), %esi
movq 0x28(%rsp), %rdx
movq 0x20(%rsp), %rcx
leaq 0x18(%rsp), %rdi
callq 0x3c630
movl %eax, %ecx
movl %ecx, 0x4(%rsp)
testl %eax, %eax
je 0x3c57e
jmp 0x3c568
movl 0x4(%rsp), %eax
subl $0x1, %eax
je 0x3c580
jmp 0x3c573
movl 0x4(%rsp), %eax
subl $0x2, %eax
je 0x3c58d
jmp 0x3c59a
jmp 0x3c59a
movl $0xffffffff, 0x34(%rsp) # imm = 0xFFFFFFFF
jmp 0x3c622
movl $0x0, 0x34(%rsp)
jmp 0x3c622
callq 0x11f5c0
movq %rax, 0x8(%rsp)
movl 0x18(%rsp), %eax
movl %eax, 0x1c(%rsp)
movl 0x1c(%rsp), %eax
cmpl 0x30(%rsp), %eax
jge 0x3c5db
movq 0x8(%rsp), %rdi
movq 0x28(%rsp), %rax
movslq 0x1c(%rsp), %rcx
movq (%rax,%rcx,8), %rsi
callq 0x11f720
movl 0x1c(%rsp), %eax
addl $0x1, %eax
movl %eax, 0x1c(%rsp)
jmp 0x3c5ac
movq 0x8(%rsp), %rdi
movq 0x20(%rsp), %rsi
callq 0xdf540
movl %eax, 0x14(%rsp)
movq 0x8(%rsp), %rdi
callq 0x11fd20
cmpl $0x0, 0x14(%rsp)
jge 0x3c609
movl $0xffffffff, 0x34(%rsp) # imm = 0xFFFFFFFF
jmp 0x3c622
cmpl $0x1, 0x14(%rsp)
jne 0x3c61a
movl $0x1, %edi
callq 0x19890
movl $0x0, 0x34(%rsp)
movl 0x34(%rsp), %eax
addq $0x38, %rsp
retq
nopl (%rax,%rax)
// File: /workspace/github_c_makefile_star2_O0/genometools[P]genometools/src/tools/gt_guessprot.c
// Function: parse_options
static GtOPrval parse_options(int *parsed_args, int argc, const char **argv,
                              GtError *err)
{
  GtOptionParser *op;
  GtOPrval oprval;
  gt_error_check(err);
  op = gt_option_parser_new("filenames",
                         "Guess if sequence in filenames is protein or DNA.");
  gt_option_parser_set_min_args(op, 1U);
  oprval = gt_option_parser_parse(op, parsed_args, argc, argv, gt_versionfunc,
                                  err);
  gt_option_parser_delete(op);
  return oprval;
}

// Assembly:
subq $0x38, %rsp
movq %rdi, 0x30(%rsp)
movl %esi, 0x2c(%rsp)
movq %rdx, 0x20(%rsp)
movq %rcx, 0x18(%rsp)
cmpq $0x0, 0x18(%rsp)
je 0x3c697
movq 0x18(%rsp), %rdi
callq 0xd8a60
testb $0x1, %al
jne 0x3c65f
jmp 0x3c697
movq 0x5ff93a(%rip), %rax    # 0x63bfa0
movq (%rax), %rdi
leaq 0x4d99a3(%rip), %rsi    # 0x516013
leaq 0x4d9b48(%rip), %rdx    # 0x5161bf
leaq 0x558814(%rip), %rcx    # 0x594e92
leaq 0x4e2b7c(%rip), %r8     # 0x51f201
movl $0x1d, %r9d
movb $0x0, %al
callq 0x199f0
callq 0x19370
jmp 0x3c699
leaq 0x52637c(%rip), %rdi    # 0x562a1c
leaq 0x4e2b73(%rip), %rsi    # 0x51f21a
callq 0xf1420
movq %rax, 0x10(%rsp)
movq 0x10(%rsp), %rdi
movl $0x1, %esi
callq 0xf2980
movq 0x10(%rsp), %rdi
movq 0x30(%rsp), %rsi
movl 0x2c(%rsp), %edx
movq 0x20(%rsp), %rcx
movq 0x18(%rsp), %r9
leaq 0xea051(%rip), %r8      # 0x126730
callq 0xf2ab0
movl %eax, 0xc(%rsp)
movq 0x10(%rsp), %rdi
callq 0xf5cf0
movl 0xc(%rsp), %eax
addq $0x38, %rsp
retq
nopl (%rax,%rax)
// File: /workspace/github_c_makefile_star2_O0/genometools[P]genometools/src/tools/gt_hop.c
// Function: gt_hop_arguments_new
static void* gt_hop_arguments_new(void)
{
  GtHopArguments *arguments = gt_malloc(sizeof (*arguments));
  arguments->encseqinput = gt_str_new();
  arguments->annotation = gt_str_new();
  arguments->atype = gt_str_new();
  arguments->map = gt_str_new();
  arguments->outfilename = gt_str_new();
  arguments->outprefix = gt_str_new();
  arguments->readset = gt_str_array_new();
  return arguments;
}

// Assembly:
pushq %rax
movl $0x88, %edi
leaq 0x4e2938(%rip), %rsi    # 0x51f2d5
movl $0x27, %edx
callq 0xe80f0
movq %rax, (%rsp)
callq 0x11d4a0
movq %rax, %rcx
movq (%rsp), %rax
movq %rcx, (%rax)
callq 0x11d4a0
movq %rax, %rcx
movq (%rsp), %rax
movq %rcx, 0x8(%rax)
callq 0x11d4a0
movq %rax, %rcx
movq (%rsp), %rax
movq %rcx, 0x20(%rax)
callq 0x11d4a0
movq %rax, %rcx
movq (%rsp), %rax
movq %rcx, 0x10(%rax)
callq 0x11d4a0
movq %rax, %rcx
movq (%rsp), %rax
movq %rcx, 0x18(%rax)
callq 0x11d4a0
movq %rax, %rcx
movq (%rsp), %rax
movq %rcx, 0x28(%rax)
callq 0x11f5c0
movq %rax, %rcx
movq (%rsp), %rax
movq %rcx, 0x80(%rax)
movq (%rsp), %rax
popq %rcx
retq
nopw %cs:(%rax,%rax)
// File: /workspace/github_c_makefile_star2_O0/genometools[P]genometools/src/tools/gt_hop.c
// Function: gt_hop_arguments_delete
static void gt_hop_arguments_delete(void *tool_arguments)
{
  GtHopArguments *arguments = tool_arguments;
  if (!arguments) return;
  gt_str_delete(arguments->encseqinput);
  gt_str_delete(arguments->annotation);
  gt_str_delete(arguments->atype);
  gt_str_delete(arguments->map);
  gt_str_delete(arguments->outfilename);
  gt_str_delete(arguments->outprefix);
  gt_str_array_delete(arguments->readset);
  gt_free(arguments);
}

// Assembly:
subq $0x18, %rsp
movq %rdi, 0x10(%rsp)
movq 0x10(%rsp), %rax
movq %rax, 0x8(%rsp)
cmpq $0x0, 0x8(%rsp)
jne 0x3ca4d
jmp 0x3cac7
movq 0x8(%rsp), %rax
movq (%rax), %rdi
callq 0x11f560
movq 0x8(%rsp), %rax
movq 0x8(%rax), %rdi
callq 0x11f560
movq 0x8(%rsp), %rax
movq 0x20(%rax), %rdi
callq 0x11f560
movq 0x8(%rsp), %rax
movq 0x10(%rax), %rdi
callq 0x11f560
movq 0x8(%rsp), %rax
movq 0x18(%rax), %rdi
callq 0x11f560
movq 0x8(%rsp), %rax
movq 0x28(%rax), %rdi
callq 0x11f560
movq 0x8(%rsp), %rax
movq 0x80(%rax), %rdi
callq 0x11fd20
movq 0x8(%rsp), %rdi
leaq 0x4e2818(%rip), %rsi    # 0x51f2d5
movl $0x3d, %edx
callq 0xe88c0
addq $0x18, %rsp
retq
nopl (%rax)
// File: /workspace/github_c_makefile_star2_O0/genometools[P]genometools/src/tools/gt_id_to_md5.c
// Function: gt_id_to_md5_arguments_new
static void *gt_id_to_md5_arguments_new(void)
{
  SeqidsToMD5Arguments *arguments = gt_calloc(1, sizeof *arguments);
  arguments->s2fi = gt_seqid2file_info_new();
  arguments->ofi = gt_output_file_info_new();
  return arguments;
}

// Assembly:
pushq %rax
movl $0x1, %edi
movl $0x20, %esi
leaq 0x4e211b(%rip), %rdx    # 0x5200ed
movl $0x28, %ecx
callq 0xe83c0
movq %rax, (%rsp)
callq 0x1d43b0
movq %rax, %rcx
movq (%rsp), %rax
movq %rcx, 0x8(%rax)
callq 0xf7d20
movq %rax, %rcx
movq (%rsp), %rax
movq %rcx, 0x10(%rax)
movq (%rsp), %rax
popq %rcx
retq
nopw %cs:(%rax,%rax)
// File: /workspace/github_c_makefile_star2_O0/genometools[P]genometools/src/tools/gt_id_to_md5.c
// Function: gt_id_to_md5_arguments_delete
static void gt_id_to_md5_arguments_delete(void *tool_arguments)
{
  SeqidsToMD5Arguments *arguments = tool_arguments;
  if (!arguments) return;
  gt_file_delete(arguments->outfp);
  gt_output_file_info_delete(arguments->ofi);
  gt_seqid2file_info_delete(arguments->s2fi);
  gt_free(arguments);
}

// Assembly:
subq $0x18, %rsp
movq %rdi, 0x10(%rsp)
movq 0x10(%rsp), %rax
movq %rax, 0x8(%rsp)
cmpq $0x0, 0x8(%rsp)
jne 0x3e02d
jmp 0x3e06d
movq 0x8(%rsp), %rax
movq 0x18(%rax), %rdi
callq 0xde430
movq 0x8(%rsp), %rax
movq 0x10(%rax), %rdi
callq 0xf8210
movq 0x8(%rsp), %rax
movq 0x8(%rax), %rdi
callq 0x1d4420
movq 0x8(%rsp), %rdi
leaq 0x4e208a(%rip), %rsi    # 0x5200ed
movl $0x35, %edx
callq 0xe88c0
addq $0x18, %rsp
retq
nopw %cs:(%rax,%rax)
// File: /workspace/github_c_makefile_star2_O0/genometools[P]genometools/src/tools/gt_id_to_md5.c
// Function: gt_id_to_md5_option_parser_new
static GtOptionParser* gt_id_to_md5_option_parser_new(void *tool_arguments)
{
  SeqidsToMD5Arguments *arguments = tool_arguments;
  GtOptionParser *op;
  GtOption *option;
  gt_assert(arguments);

  op = gt_option_parser_new("[option ...] [GFF3_file ...]",
                            "Change sequence IDs in given GFF3 files to MD5 "
                            "fingerprints of the corresponding sequences.");

  /* -seqfile, -matchdesc, -usedesc and -regionmapping */
  gt_seqid2file_register_options(op, arguments->s2fi);

  /* -subtargetids */
  option = gt_option_new_bool("subtargetids", "substitute the target IDs with "
                              "MD5 sums", &arguments->substitute_target_ids,
                              true);
  gt_option_parser_add_option(op, option);

  /* -v */
  option = gt_option_new_verbose(&arguments->verbose);
  gt_option_parser_add_option(op, option);

  /* output file options */
  gt_output_file_info_register_options(arguments->ofi, op, &arguments->outfp);

  gt_option_parser_set_comment_func(op, gt_gtdata_show_help, NULL);

  return op;
}

// Assembly:
subq $0x28, %rsp
movq %rdi, 0x20(%rsp)
movq 0x20(%rsp), %rax
movq %rax, 0x18(%rsp)
cmpq $0x0, 0x18(%rsp)
jne 0x3e0d3
movq 0x5fdefe(%rip), %rax    # 0x63bfa0
movq (%rax), %rdi
leaq 0x4d7f67(%rip), %rsi    # 0x516013
leaq 0x53caac(%rip), %rdx    # 0x57ab5f
leaq 0x4e204c(%rip), %rcx    # 0x520106
leaq 0x4e202c(%rip), %r8     # 0x5200ed
movl $0x3d, %r9d
movb $0x0, %al
callq 0x199f0
callq 0x19370
jmp 0x3e0d5
leaq 0x4dd466(%rip), %rdi    # 0x51b542
leaq 0x4e2042(%rip), %rsi    # 0x520125
callq 0xf1420
movq %rax, 0x10(%rsp)
movq 0x10(%rsp), %rdi
movq 0x18(%rsp), %rax
movq 0x8(%rax), %rsi
callq 0x1d48c0
movq 0x18(%rsp), %rdx
addq $0x1, %rdx
leaq 0x4e2071(%rip), %rdi    # 0x520181
leaq 0x4e2077(%rip), %rsi    # 0x52018e
movl $0x1, %ecx
callq 0xf5f20
movq %rax, 0x8(%rsp)
movq 0x10(%rsp), %rdi
movq 0x8(%rsp), %rsi
callq 0xf1600
movq 0x18(%rsp), %rdi
callq 0xf5f90
movq %rax, 0x8(%rsp)
movq 0x10(%rsp), %rdi
movq 0x8(%rsp), %rsi
callq 0xf1600
movq 0x18(%rsp), %rax
movq 0x10(%rax), %rdi
movq 0x10(%rsp), %rsi
movq 0x18(%rsp), %rdx
addq $0x18, %rdx
callq 0xf7d50
movq 0x10(%rsp), %rdi
leaq 0x143b65(%rip), %rsi    # 0x181ce0
xorl %eax, %eax
movl %eax, %edx
callq 0xf1770
movq 0x10(%rsp), %rax
addq $0x28, %rsp
retq
nop
// File: /workspace/github_c_makefile_star2_O0/genometools[P]genometools/src/tools/gt_idxlocali.c
// Function: gt_idxlocali_arguments_delete
static void gt_idxlocali_arguments_delete(void *tool_arguments)
{
  IdxlocaliOptions *arguments = tool_arguments;

  if (!arguments)
  {
    return;
  }
  gt_str_delete(arguments->indexname);
  gt_str_array_delete(arguments->queryfiles);
  gt_option_delete(arguments->refoptionesaindex);
  gt_option_delete(arguments->refoptionpckindex);
  gt_free(arguments);
}

// Assembly:
subq $0x18, %rsp
movq %rdi, 0x10(%rsp)
movq 0x10(%rsp), %rax
movq %rax, 0x8(%rsp)
cmpq $0x0, 0x8(%rsp)
jne 0x3e3ed
jmp 0x3e43a
movq 0x8(%rsp), %rax
movq 0x8(%rax), %rdi
callq 0x11f560
movq 0x8(%rsp), %rax
movq (%rax), %rdi
callq 0x11fd20
movq 0x8(%rsp), %rax
movq 0x10(%rax), %rdi
callq 0xf5df0
movq 0x8(%rsp), %rax
movq 0x18(%rax), %rdi
callq 0xf5df0
movq 0x8(%rsp), %rdi
leaq 0x4e1d9a(%rip), %rsi    # 0x5201ca
movl $0x2c, %edx
callq 0xe88c0
addq $0x18, %rsp
retq
nop
// File: /workspace/github_c_makefile_star2_O0/genometools[P]genometools/src/tools/gt_idxlocali.c
// Function: gt_idxlocali_arguments_check
static int gt_idxlocali_arguments_check(GT_UNUSED int rest_argc,
                                        void *tool_arguments,
                                        GT_UNUSED GtError * err)
{
  IdxlocaliOptions *arguments = tool_arguments;

  if (gt_option_is_set(arguments->refoptionesaindex))
  {
    arguments->withesa = true;
  } else
  {
    gt_assert(gt_option_is_set(arguments->refoptionpckindex));
    arguments->withesa = false;
  }
  return 0;
}

// Assembly:
subq $0x28, %rsp
movl %edi, 0x24(%rsp)
movq %rsi, 0x18(%rsp)
movq %rdx, 0x10(%rsp)
movq 0x18(%rsp), %rax
movq %rax, 0x8(%rsp)
movq 0x8(%rsp), %rax
movq 0x10(%rax), %rdi
callq 0xf74a0
testb $0x1, %al
jne 0x3e7f0
jmp 0x3e7fb
movq 0x8(%rsp), %rax
movb $0x1, 0x20(%rax)
jmp 0x3e852
jmp 0x3e7fd
movq 0x8(%rsp), %rax
movq 0x18(%rax), %rdi
callq 0xf74a0
testb $0x1, %al
jne 0x3e847
movq 0x5fd78a(%rip), %rax    # 0x63bfa0
movq (%rax), %rdi
leaq 0x4d77f3(%rip), %rsi    # 0x516013
leaq 0x4dc5db(%rip), %rdx    # 0x51ae02
leaq 0x4e1b11(%rip), %rcx    # 0x52033f
leaq 0x4e1995(%rip), %r8     # 0x5201ca
movl $0x8c, %r9d
movb $0x0, %al
callq 0x199f0
callq 0x19370
jmp 0x3e849
movq 0x8(%rsp), %rax
movb $0x0, 0x20(%rax)
xorl %eax, %eax
addq $0x28, %rsp
retq
nopl (%rax)
// File: /workspace/github_c_makefile_star2_O0/genometools[P]genometools/src/tools/gt_inlineseq_add.c
// Function: gt_inlineseq_add_arguments_new
static void *gt_inlineseq_add_arguments_new(void)
{
  InlineseqAddArguments *arguments = gt_calloc(1, sizeof *arguments);
  arguments->s2fi = gt_seqid2file_info_new();
  arguments->ofi = gt_output_file_info_new();
  arguments->outfp = NULL;
  return arguments;
}

// Assembly:
pushq %rax
movl $0x1, %edi
movl $0x18, %esi
leaq 0x4e18f3(%rip), %rdx    # 0x520395
movl $0x24, %ecx
callq 0xe83c0
movq %rax, (%rsp)
callq 0x1d43b0
movq %rax, %rcx
movq (%rsp), %rax
movq %rcx, (%rax)
callq 0xf7d20
movq %rax, %rcx
movq (%rsp), %rax
movq %rcx, 0x8(%rax)
movq (%rsp), %rax
movq $0x0, 0x10(%rax)
movq (%rsp), %rax
popq %rcx
retq
nopw %cs:(%rax,%rax)
// File: /workspace/github_c_makefile_star2_O0/genometools[P]genometools/src/tools/gt_inlineseq_add.c
// Function: gt_inlineseq_add_arguments_delete
static void gt_inlineseq_add_arguments_delete(void *tool_arguments)
{
  InlineseqAddArguments *arguments = tool_arguments;
  if (!arguments) return;
  gt_file_delete(arguments->outfp);
  gt_seqid2file_info_delete(arguments->s2fi);
  gt_output_file_info_delete(arguments->ofi);
  gt_free(arguments);
}

// Assembly:
subq $0x18, %rsp
movq %rdi, 0x10(%rsp)
movq 0x10(%rsp), %rax
movq %rax, 0x8(%rsp)
cmpq $0x0, 0x8(%rsp)
jne 0x3eb0d
jmp 0x3eb4c
movq 0x8(%rsp), %rax
movq 0x10(%rax), %rdi
callq 0xde430
movq 0x8(%rsp), %rax
movq (%rax), %rdi
callq 0x1d4420
movq 0x8(%rsp), %rax
movq 0x8(%rax), %rdi
callq 0xf8210
movq 0x8(%rsp), %rdi
leaq 0x4e1853(%rip), %rsi    # 0x520395
movl $0x32, %edx
callq 0xe88c0
addq $0x18, %rsp
retq
nopw %cs:(%rax,%rax)
// File: /workspace/github_c_makefile_star2_O0/genometools[P]genometools/src/tools/gt_inlineseq_add.c
// Function: gt_inlineseq_add_option_parser_new
static GtOptionParser* gt_inlineseq_add_option_parser_new(void *tool_arguments)
{
  GtOptionParser *op;
  GT_UNUSED GtOption *option;
  InlineseqAddArguments *arguments = tool_arguments;

  /* init */
  op = gt_option_parser_new("[options] [GFF3_file ...]",
                            "Adds inline sequences from external source to "
                            "GFF3 input.");

  gt_seqid2file_register_options(op, arguments->s2fi);
  gt_output_file_info_register_options(arguments->ofi, op, &arguments->outfp);

  return op;
}

// Assembly:
subq $0x28, %rsp
movq %rdi, 0x20(%rsp)
movq 0x20(%rsp), %rax
movq %rax, 0x8(%rsp)
leaq 0x4e1838(%rip), %rdi    # 0x5203b2
leaq 0x4e184b(%rip), %rsi    # 0x5203cc
callq 0xf1420
movq %rax, 0x18(%rsp)
movq 0x18(%rsp), %rdi
movq 0x8(%rsp), %rax
movq (%rax), %rsi
callq 0x1d48c0
movq 0x8(%rsp), %rax
movq 0x8(%rax), %rdi
movq 0x18(%rsp), %rsi
movq 0x8(%rsp), %rdx
addq $0x10, %rdx
callq 0xf7d50
movq 0x18(%rsp), %rax
addq $0x28, %rsp
retq
nopw %cs:(%rax,%rax)
// File: /workspace/github_c_makefile_star2_O0/genometools[P]genometools/src/tools/gt_inlineseq_split.c
// Function: gt_inlineseq_split_arguments_new
static void* gt_inlineseq_split_arguments_new(void)
{
  GtInlineseqSplitArguments *arguments
    = gt_calloc((size_t) 1, sizeof *arguments);
  arguments->seqoutfile = gt_str_new();
  arguments->gffoutfile = gt_str_new();
  return arguments;
}

// Assembly:
pushq %rax
movl $0x1, %edi
movl $0x10, %esi
leaq 0x4e160b(%rip), %rdx    # 0x52042d
movl $0x26, %ecx
callq 0xe83c0
movq %rax, (%rsp)
callq 0x11d4a0
movq %rax, %rcx
movq (%rsp), %rax
movq %rcx, (%rax)
callq 0x11d4a0
movq %rax, %rcx
movq (%rsp), %rax
movq %rcx, 0x8(%rax)
movq (%rsp), %rax
popq %rcx
retq
nopw %cs:(%rax,%rax)
// File: /workspace/github_c_makefile_star2_O0/genometools[P]genometools/src/tools/gt_inlineseq_split.c
// Function: gt_inlineseq_split_arguments_delete
static void gt_inlineseq_split_arguments_delete(void *tool_arguments)
{
  GtInlineseqSplitArguments *arguments = tool_arguments;
  if (arguments != NULL) {
    gt_str_delete(arguments->seqoutfile);
    gt_str_delete(arguments->gffoutfile);
    gt_free(arguments);
  }
}

// Assembly:
subq $0x18, %rsp
movq %rdi, 0x10(%rsp)
movq 0x10(%rsp), %rax
movq %rax, 0x8(%rsp)
cmpq $0x0, 0x8(%rsp)
je 0x3eeac
movq 0x8(%rsp), %rax
movq (%rax), %rdi
callq 0x11f560
movq 0x8(%rsp), %rax
movq 0x8(%rax), %rdi
callq 0x11f560
movq 0x8(%rsp), %rdi
leaq 0x4e158b(%rip), %rsi    # 0x52042d
movl $0x32, %edx
callq 0xe88c0
addq $0x18, %rsp
retq
nopw %cs:(%rax,%rax)
// File: /workspace/github_c_makefile_star2_O0/genometools[P]genometools/src/tools/gt_inlineseq_split.c
// Function: gt_inlineseq_split_option_parser_new
static GtOptionParser* gt_inlineseq_split_option_parser_new(
                                                   void *tool_arguments)
{
  GtInlineseqSplitArguments *arguments = tool_arguments;
  GtOptionParser *op;
  GtOption GT_UNUSED *option, *seqopt, *gff3opt;
  gt_assert(arguments);

  /* init */
  op = gt_option_parser_new("(-seqfile <seqfile> | -gff3file <gff3file>) "
                            "[GFF3_file]",
                            "Split GFF3 annotations with inline sequences into "
                            "separate files.");

  /* -seqfile */
  seqopt = gt_option_new_string("seqfile", "output file for sequences as FASTA",
                                arguments->seqoutfile, NULL);
  gt_option_parser_add_option(op, seqopt);

  /* -gff3file */
  gff3opt = gt_option_new_string("gff3file", "output file for annotations "
                                             "as GFF3",
                                 arguments->gffoutfile, NULL);
  gt_option_parser_add_option(op, gff3opt);

  gt_option_is_mandatory_either(seqopt, gff3opt);

  return op;
}

// Assembly:
subq $0x38, %rsp
movq %rdi, 0x30(%rsp)
movq 0x30(%rsp), %rax
movq %rax, 0x28(%rsp)
cmpq $0x0, 0x28(%rsp)
jne 0x3ef13
movq 0x5fd0be(%rip), %rax    # 0x63bfa0
movq (%rax), %rdi
leaq 0x4d7127(%rip), %rsi    # 0x516013
leaq 0x53bc6c(%rip), %rdx    # 0x57ab5f
leaq 0x4e1552(%rip), %rcx    # 0x52044c
leaq 0x4e152c(%rip), %r8     # 0x52042d
movl $0x3c, %r9d
movb $0x0, %al
callq 0x199f0
callq 0x19370
jmp 0x3ef15
leaq 0x4e1555(%rip), %rdi    # 0x520471
leaq 0x4e1586(%rip), %rsi    # 0x5204a9
callq 0xf1420
movq %rax, 0x20(%rsp)
movq 0x28(%rsp), %rax
movq (%rax), %rdx
leaq 0x53192d(%rip), %rdi    # 0x570869
leaq 0x4e15a8(%rip), %rsi    # 0x5204eb
xorl %eax, %eax
movl %eax, %ecx
callq 0xf69f0
movq %rax, 0x10(%rsp)
movq 0x20(%rsp), %rdi
movq 0x10(%rsp), %rsi
callq 0xf1600
movq 0x28(%rsp), %rax
movq 0x8(%rax), %rdx
leaq 0x5109f9(%rip), %rdi    # 0x54f969
leaq 0x4e1597(%rip), %rsi    # 0x52050e
xorl %eax, %eax
movl %eax, %ecx
callq 0xf69f0
movq %rax, 0x8(%rsp)
movq 0x20(%rsp), %rdi
movq 0x8(%rsp), %rsi
callq 0xf1600
movq 0x10(%rsp), %rdi
movq 0x8(%rsp), %rsi
callq 0xf6cf0
movq 0x20(%rsp), %rax
addq $0x38, %rsp
retq
nopl (%rax)
// File: /workspace/github_c_makefile_star2_O0/genometools[P]genometools/src/tools/gt_interfeat.c
// Function: gt_interfeat_arguments_new
static void* gt_interfeat_arguments_new(void)
{
  InterFeatArguments *arguments = gt_calloc(1, sizeof *arguments);
  arguments->outside_type = gt_str_new();
  arguments->inter_type = gt_str_new();
  arguments->ofi = gt_output_file_info_new();
  return arguments;
}

// Assembly:
pushq %rax
movl $0x1, %edi
movl $0x20, %esi
leaq 0x4e1277(%rip), %rdx    # 0x520559
movl $0x22, %ecx
callq 0xe83c0
movq %rax, (%rsp)
callq 0x11d4a0
movq %rax, %rcx
movq (%rsp), %rax
movq %rcx, (%rax)
callq 0x11d4a0
movq %rax, %rcx
movq (%rsp), %rax
movq %rcx, 0x8(%rax)
callq 0xf7d20
movq %rax, %rcx
movq (%rsp), %rax
movq %rcx, 0x10(%rax)
movq (%rsp), %rax
popq %rcx
retq
nopw %cs:(%rax,%rax)
// File: /workspace/github_c_makefile_star2_O0/genometools[P]genometools/src/tools/gt_interfeat.c
// Function: gt_interfeat_arguments_delete
static void gt_interfeat_arguments_delete(void *tool_arguments)
{
  InterFeatArguments *arguments = tool_arguments;
  if (!arguments) return;
  gt_file_delete(arguments->outfp);
  gt_output_file_info_delete(arguments->ofi);
  gt_str_delete(arguments->inter_type);
  gt_str_delete(arguments->outside_type);
  gt_free(arguments);
}

// Assembly:
subq $0x18, %rsp
movq %rdi, 0x10(%rsp)
movq 0x10(%rsp), %rax
movq %rax, 0x8(%rsp)
cmpq $0x0, 0x8(%rsp)
jne 0x3f34d
jmp 0x3f39a
movq 0x8(%rsp), %rax
movq 0x18(%rax), %rdi
callq 0xde430
movq 0x8(%rsp), %rax
movq 0x10(%rax), %rdi
callq 0xf8210
movq 0x8(%rsp), %rax
movq 0x8(%rax), %rdi
callq 0x11f560
movq 0x8(%rsp), %rax
movq (%rax), %rdi
callq 0x11f560
movq 0x8(%rsp), %rdi
leaq 0x4e11c9(%rip), %rsi    # 0x520559
movl $0x31, %edx
callq 0xe88c0
addq $0x18, %rsp
retq
nop