// File: /workspace/github_cpp_makefile_star2_O1/ncbi[P]amr/alignment.cpp
// Function: Alignment_sp::Alignment::set_nident()
void Alignment::set_nident ()
{
  ASSERT (targetSeq. size () == refSeq. size ());
  nident = 0;
  FFOR (size_t, i, targetSeq. size ())
    if (targetSeq [i] == refSeq [i])
      nident++;
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
subq $0x108, %rsp            # imm = 0x108
movq %rdi, %rbx
callq 0xb070
movl $0x0, (%rax)
movq 0x38(%rbx), %rax
cmpq 0xa0(%rbx), %rax
jne 0x61870
movq $0x0, 0x200(%rbx)
testq %rax, %rax
je 0x6185e
movq 0x200(%rbx), %rcx
movq 0x30(%rbx), %rdx
movq 0x98(%rbx), %rsi
xorl %edi, %edi
movb (%rdx,%rdi), %r8b
cmpb (%rsi,%rdi), %r8b
jne 0x61856
incq %rcx
movq %rcx, 0x200(%rbx)
incq %rdi
cmpq %rdi, %rax
jne 0x61842
addq $0x108, %rsp            # imm = 0x108
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
retq
callq 0xb6b0
testl %eax, %eax
jne 0x61908
leaq 0x98(%rsp), %r14
movq %r14, -0x10(%r14)
leaq 0x35798(%rip), %rsi     # 0x97028
leaq 0x357a7(%rip), %rdx     # 0x9703e
leaq 0x88(%rsp), %rdi
callq 0xdc76
leaq 0xa8(%rsp), %rdi
movl $0x2a5, %esi            # imm = 0x2A5
callq 0xe1a8
leaq 0xc8(%rsp), %rdi
leaq 0x88(%rsp), %rsi
leaq 0xa8(%rsp), %rdx
callq 0xe100
leaq 0x318f7(%rip), %rsi     # 0x931d1
leaq 0xc8(%rsp), %rdi
callq 0xbb10
leaq 0x18(%rsp), %r15
movq %r15, -0x10(%r15)
movq (%rax), %rdx
movq %rax, %rcx
addq $0x10, %rcx
cmpq %rcx, %rdx
jne 0x61912
movups (%rcx), %xmm0
movups %xmm0, (%r15)
jmp 0x6191f
movl $0x1, %edi
callq 0xb6d0
movq %rdx, 0x8(%rsp)
movq (%rcx), %rdx
movq %rdx, 0x18(%rsp)
movq 0x8(%rax), %rdx
movq %rdx, 0x10(%rsp)
movq %rcx, (%rax)
movq $0x0, 0x8(%rax)
movb $0x0, 0x10(%rax)
leaq 0x78(%rsp), %r12
movq %r12, -0x10(%r12)
leaq 0x35f1d(%rip), %rsi     # 0x97865
leaq 0x35f40(%rip), %rdx     # 0x9788f
leaq 0x68(%rsp), %rdi
callq 0xdc76
leaq 0x31f51(%rip), %rsi     # 0x938b1
leaq 0x68(%rsp), %rdi
callq 0xbb10
leaq 0x38(%rsp), %r13
movq %r13, -0x10(%r13)
movq (%rax), %rdx
movq %rax, %rcx
addq $0x10, %rcx
cmpq %rcx, %rdx
jne 0x6198c
movups (%rcx), %xmm0
movups %xmm0, (%r13)
jmp 0x61999
movq %rdx, 0x28(%rsp)
movq (%rcx), %rdx
movq %rdx, 0x38(%rsp)
movq 0x8(%rax), %rsi
leaq 0x28(%rsp), %rdx
movq %rsi, 0x8(%rdx)
movq %rcx, (%rax)
movq $0x0, 0x8(%rax)
movb $0x0, 0x10(%rax)
leaq 0xe8(%rsp), %rdi
leaq 0x8(%rsp), %rsi
callq 0xe100
leaq 0x35e26(%rip), %rsi     # 0x977f4
leaq 0xe8(%rsp), %rdi
callq 0xbb10
leaq 0x58(%rsp), %rbp
movq %rbp, -0x10(%rbp)
movq (%rax), %rdx
movq %rax, %rcx
addq $0x10, %rcx
cmpq %rcx, %rdx
jne 0x619fc
movups (%rcx), %xmm0
movups %xmm0, (%rbp)
jmp 0x61a09
movq %rdx, 0x48(%rsp)
movq (%rcx), %rdx
movq %rdx, 0x58(%rsp)
movq 0x8(%rax), %rdx
leaq 0x48(%rsp), %rdi
movq %rdx, 0x8(%rdi)
movq %rcx, (%rax)
movq $0x0, 0x8(%rax)
movb $0x0, 0x10(%rax)
callq 0x1151b
movq %rax, %rbx
movq 0x48(%rsp), %rdi
cmpq %rbp, %rdi
je 0x61a49
movq 0x58(%rsp), %rsi
incq %rsi
callq 0xb5a0
jmp 0x61a49
movq %rax, %rbx
leaq 0xf8(%rsp), %rax
movq -0x10(%rax), %rdi
cmpq %rax, %rdi
je 0x61a6f
movq 0xf8(%rsp), %rsi
incq %rsi
callq 0xb5a0
jmp 0x61a6f
movq %rax, %rbx
movq 0x28(%rsp), %rdi
cmpq %r13, %rdi
je 0x61a8b
movq 0x38(%rsp), %rsi
incq %rsi
callq 0xb5a0
jmp 0x61a8b
movq %rax, %rbx
movq 0x68(%rsp), %rdi
cmpq %r12, %rdi
je 0x61aa7
movq 0x78(%rsp), %rsi
incq %rsi
callq 0xb5a0
jmp 0x61aa7
movq %rax, %rbx
movq 0x8(%rsp), %rdi
cmpq %r15, %rdi
je 0x61ac3
movq 0x18(%rsp), %rsi
incq %rsi
callq 0xb5a0
jmp 0x61ac3
movq %rax, %rbx
leaq 0xd8(%rsp), %rax
movq -0x10(%rax), %rdi
cmpq %rax, %rdi
je 0x61ae9
movq 0xd8(%rsp), %rsi
incq %rsi
callq 0xb5a0
jmp 0x61ae9
movq %rax, %rbx
leaq 0xb8(%rsp), %rax
movq -0x10(%rax), %rdi
cmpq %rax, %rdi
je 0x61b0f
movq 0xb8(%rsp), %rsi
incq %rsi
callq 0xb5a0
jmp 0x61b0f
movq %rax, %rbx
movq 0x88(%rsp), %rdi
cmpq %r14, %rdi
je 0x61b2c
movq 0x98(%rsp), %rsi
incq %rsi
callq 0xb5a0
movq %rbx, %rdi
callq 0xba60