// File: /workspace/github_cpp_makefile_star2_O1/millanek[P]evo/process_vcf_use_map.cpp
// Function: loadLinkageGroupMap[abi:cxx11](std::basic_ifstream<char, std::char_traits<char>>*&)
std::map<string, std::vector<std::vector<string> > > loadLinkageGroupMap(std::ifstream*& LGfile) {
    std::map<string, std::vector<std::vector<string> > > LGmap;
    std::vector<std::vector<string> > scaffoldsInLG;
    string currentLG;
    string line;
    getline(*LGfile, line);
    currentLG = line.substr(1, std::string::npos);
    while (getline(*LGfile, line)) {
        if (line[0] == '>') {
            LGmap[currentLG] = scaffoldsInLG;
            currentLG = line.substr(1, std::string::npos);
            scaffoldsInLG.clear();
        } else {
            std::vector<string> thisScaffold = split(line, '\t');
            scaffoldsInLG.push_back(thisScaffold);
        } 
    }
    return LGmap;
}

// Assembly:
pushq %rbp
pushq %r15
pushq %r14
pushq %r13
pushq %r12
pushq %rbx
subq $0x88, %rsp
movq %rsi, %r14
leaq 0x8(%rdi), %rax
movl $0x0, 0x8(%rdi)
xorl %ecx, %ecx
movq %rcx, 0x10(%rdi)
movq %rax, 0x18(%rdi)
movq %rax, 0x20(%rdi)
movq %rdi, 0x8(%rsp)
movq %rcx, 0x28(%rdi)
movq %rcx, 0x40(%rsp)
xorps %xmm0, %xmm0
movaps %xmm0, 0x30(%rsp)
leaq 0x20(%rsp), %rbx
movq %rbx, -0x10(%rbx)
movq %rcx, -0x8(%rbx)
movb %cl, (%rbx)
leaq 0x58(%rsp), %rax
movq %rax, -0x10(%rax)
movq %rcx, -0x8(%rax)
movb %cl, (%rax)
movq (%rsi), %r15
movq (%r15), %rax
movq -0x18(%rax), %rdi
addq %r15, %rdi
movl $0xa, %esi
callq 0x8450
movsbl %al, %edx
leaq 0x48(%rsp), %rsi
movq %r15, %rdi
callq 0x8870
leaq 0x68(%rsp), %rdi
leaq 0x48(%rsp), %rsi
movl $0x1, %edx
movq $-0x1, %rcx
callq 0x84a0
leaq 0x10(%rsp), %rdi
leaq 0x68(%rsp), %rbx
movq %rbx, %rsi
callq 0x8540
movq (%rbx), %rdi
leaq 0x78(%rsp), %rax
cmpq %rax, %rdi
je 0x7c0d9
movq 0x78(%rsp), %rsi
incq %rsi
callq 0x8480
leaq 0x48(%rsp), %r15
leaq 0x68(%rsp), %rbp
movq (%r14), %rbx
movq (%rbx), %rax
movq -0x18(%rax), %rdi
addq %rbx, %rdi
movl $0xa, %esi
callq 0x8450
movsbl %al, %edx
movq %rbx, %rdi
movq %r15, %rsi
callq 0x8870
movq (%rax), %rcx
movq -0x18(%rcx), %rcx
testb $0x5, 0x20(%rax,%rcx)
movq 0x48(%rsp), %rdi
jne 0x7c1df
cmpb $0x3e, (%rdi)
jne 0x7c1b5
movq 0x8(%rsp), %rdi
leaq 0x10(%rsp), %rsi
callq 0x323c8
movq %rax, %rdi
leaq 0x30(%rsp), %rsi
callq 0x32444
movl $0x1, %edx
movq %rbp, %rdi
movq %r15, %rsi
movq $-0x1, %rcx
callq 0x84a0
leaq 0x10(%rsp), %rdi
movq %rbp, %rsi
callq 0x8540
movq 0x68(%rsp), %rdi
leaq 0x78(%rsp), %rax
cmpq %rax, %rdi
je 0x7c184
movq 0x78(%rsp), %rsi
incq %rsi
callq 0x8480
movq 0x30(%rsp), %r12
movq 0x38(%rsp), %r13
cmpq %r12, %r13
je 0x7c0e3
movq %r12, %rbx
movq %rbx, %rdi
callq 0x3123c
addq $0x18, %rbx
cmpq %r13, %rbx
jne 0x7c19a
movq %r12, 0x38(%rsp)
jmp 0x7c0e3
movq %rbp, %rdi
movq %r15, %rsi
movl $0x9, %edx
callq 0x50624
leaq 0x30(%rsp), %rdi
movq %rbp, %rsi
callq 0x32338
movq %rbp, %rdi
callq 0x3123c
jmp 0x7c0e3
leaq 0x58(%rsp), %rax
cmpq %rax, %rdi
je 0x7c1f6
movq 0x58(%rsp), %rsi
incq %rsi
callq 0x8480
movq 0x10(%rsp), %rdi
leaq 0x20(%rsp), %rax
cmpq %rax, %rdi
je 0x7c212
movq 0x20(%rsp), %rsi
incq %rsi
callq 0x8480
leaq 0x30(%rsp), %rdi
callq 0x31aa2
movq 0x8(%rsp), %rax
addq $0x88, %rsp
popq %rbx
popq %r12
popq %r13
popq %r14
popq %r15
popq %rbp
retq
jmp 0x7c235
movq %rax, %r14
jmp 0x7c255
movq %rax, %r14
leaq 0x68(%rsp), %rdi
callq 0x3123c
jmp 0x7c250
jmp 0x7c24d
jmp 0x7c24d
movq %rax, %r14
leaq 0x20(%rsp), %rbx
movq 0x48(%rsp), %rdi
leaq 0x58(%rsp), %rax
cmpq %rax, %rdi
je 0x7c271
movq 0x58(%rsp), %rsi
incq %rsi
callq 0x8480
movq 0x10(%rsp), %rdi
cmpq %rbx, %rdi
je 0x7c288
movq 0x20(%rsp), %rsi
incq %rsi
callq 0x8480
leaq 0x30(%rsp), %rdi
callq 0x31aa2
movq 0x8(%rsp), %rdi
callq 0x33302
movq %r14, %rdi
callq 0x8840