// File: ncbi[P]amr/stx/fasta_extract.cpp
// Function: (anonymous namespace)::ThisApplication::ThisApplication()
ThisApplication ()
    : Application ("Extract sequences out of a FASTA file")
    {
      addPositional ("fasta", "FASTA file");
      addPositional ("target", "Target identifiers in the FASTA file to extract.\n\
Line format for amino acid sequences : <id> <gene symbol> <product name>\n\
Line format for nucleotide sequences : <id> <start (>=1)> <stop (>= start)> <strand (+/-)> <gene symbol> <product name>\
");
      addFlag ("aa", "Amino acid sequenes, otherwise nucleotide");
	    version = SVN_REV;
    }

// Assembly:
subq $0x178, %rsp            # imm = 0x178
movq %rdi, 0x170(%rsp)
movq 0x170(%rsp), %rax
movq %rax, 0x38(%rsp)
leaq 0x14f(%rsp), %rdi
movq %rdi, 0x40(%rsp)
callq 0xcc80
movq 0x40(%rsp), %rdx
leaq 0x7dfa0(%rip), %rsi     # 0x8b15a
leaq 0x150(%rsp), %rdi
callq 0x12640
jmp 0xd1c9
movq 0x38(%rsp), %rdi
leaq 0x150(%rsp), %rsi
movl $0x1, %edx
xorl %r8d, %r8d
movl %r8d, %ecx
callq 0x12700
jmp 0xd1e8
leaq 0x150(%rsp), %rdi
callq 0xce28
leaq 0x14f(%rsp), %rdi
callq 0xc740
movq 0x38(%rsp), %rax
leaq 0xa8342(%rip), %rcx     # 0xb5550
movq %rcx, (%rax)
leaq 0x117(%rsp), %rdi
movq %rdi, 0x30(%rsp)
callq 0xcc80
movq 0x30(%rsp), %rdx
leaq 0x7df51(%rip), %rsi     # 0x8b180
leaq 0x118(%rsp), %rdi
callq 0x12640
jmp 0xd23e
leaq 0xef(%rsp), %rdi
movq %rdi, 0x28(%rsp)
callq 0xcc80
movq 0x28(%rsp), %rdx
leaq 0x7df19(%rip), %rsi     # 0x8b175
leaq 0xf0(%rsp), %rdi
callq 0x12640
jmp 0xd26b
movq 0x38(%rsp), %rdi
leaq 0x118(%rsp), %rsi
leaq 0xf0(%rsp), %rdx
callq 0x3c100
jmp 0xd287
leaq 0xf0(%rsp), %rdi
callq 0xce28
leaq 0xef(%rsp), %rdi
callq 0xc740
leaq 0x118(%rsp), %rdi
callq 0xce28
leaq 0x117(%rsp), %rdi
callq 0xc740
leaq 0xc7(%rsp), %rdi
movq %rdi, 0x20(%rsp)
callq 0xcc80
movq 0x20(%rsp), %rdx
leaq 0x7dead(%rip), %rsi     # 0x8b186
leaq 0xc8(%rsp), %rdi
callq 0x12640
jmp 0xd2e8
leaq 0x9f(%rsp), %rdi
movq %rdi, 0x18(%rsp)
callq 0xcc80
movq 0x18(%rsp), %rdx
leaq 0x7de87(%rip), %rsi     # 0x8b18d
leaq 0xa0(%rsp), %rdi
callq 0x12640
jmp 0xd315
movq 0x38(%rsp), %rdi
leaq 0xc8(%rsp), %rsi
leaq 0xa0(%rsp), %rdx
callq 0x3c100
jmp 0xd331
leaq 0xa0(%rsp), %rdi
callq 0xce28
leaq 0x9f(%rsp), %rdi
callq 0xc740
leaq 0xc8(%rsp), %rdi
callq 0xce28
leaq 0xc7(%rsp), %rdi
callq 0xc740
leaq 0x77(%rsp), %rdi
movq %rdi, 0x10(%rsp)
callq 0xcc80
movq 0x10(%rsp), %rdx
leaq 0x7deff(%rip), %rsi     # 0x8b27f
leaq 0x78(%rsp), %rdi
callq 0x12640
jmp 0xd38c
leaq 0x4f(%rsp), %rdi
movq %rdi, 0x8(%rsp)
callq 0xcc80
movq 0x8(%rsp), %rdx
leaq 0x7dedb(%rip), %rsi     # 0x8b282
leaq 0x50(%rsp), %rdi
callq 0x12640
jmp 0xd3b3
movq 0x38(%rsp), %rdi
leaq 0x78(%rsp), %rsi
leaq 0x50(%rsp), %rdx
xorl %ecx, %ecx
callq 0x3b8d0
jmp 0xd3cb
leaq 0x50(%rsp), %rdi
callq 0xce28
leaq 0x4f(%rsp), %rdi
callq 0xc740
leaq 0x78(%rsp), %rdi
callq 0xce28
leaq 0x77(%rsp), %rdi
callq 0xc740
movq 0x38(%rsp), %rdi
addq $0x28, %rdi
leaq 0x7dea9(%rip), %rsi     # 0x8b2ac
callq 0xc990
jmp 0xd40a
addq $0x178, %rsp            # imm = 0x178
retq
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x140(%rsp)
movl %eax, 0x13c(%rsp)
jmp 0xd449
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x140(%rsp)
movl %eax, 0x13c(%rsp)
leaq 0x150(%rsp), %rdi
callq 0xce28
leaq 0x14f(%rsp), %rdi
callq 0xc740
jmp 0xd5d2
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x140(%rsp)
movl %eax, 0x13c(%rsp)
jmp 0xd4c2
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x140(%rsp)
movl %eax, 0x13c(%rsp)
jmp 0xd4a8
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x140(%rsp)
movl %eax, 0x13c(%rsp)
leaq 0xf0(%rsp), %rdi
callq 0xce28
leaq 0xef(%rsp), %rdi
callq 0xc740
leaq 0x118(%rsp), %rdi
callq 0xce28
leaq 0x117(%rsp), %rdi
callq 0xc740
jmp 0xd5c8
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x140(%rsp)
movl %eax, 0x13c(%rsp)
jmp 0xd53b
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x140(%rsp)
movl %eax, 0x13c(%rsp)
jmp 0xd521
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x140(%rsp)
movl %eax, 0x13c(%rsp)
leaq 0xa0(%rsp), %rdi
callq 0xce28
leaq 0x9f(%rsp), %rdi
callq 0xc740
leaq 0xc8(%rsp), %rdi
callq 0xce28
leaq 0xc7(%rsp), %rdi
callq 0xc740
jmp 0xd5c8
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x140(%rsp)
movl %eax, 0x13c(%rsp)
jmp 0xd5a8
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x140(%rsp)
movl %eax, 0x13c(%rsp)
jmp 0xd594
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x140(%rsp)
movl %eax, 0x13c(%rsp)
leaq 0x50(%rsp), %rdi
callq 0xce28
leaq 0x4f(%rsp), %rdi
callq 0xc740
leaq 0x78(%rsp), %rdi
callq 0xce28
leaq 0x77(%rsp), %rdi
callq 0xc740
jmp 0xd5c8
movq %rax, %rcx
movl %edx, %eax
movq %rcx, 0x140(%rsp)
movl %eax, 0x13c(%rsp)
movq 0x38(%rsp), %rdi
callq 0x128a0
movq 0x140(%rsp), %rdi
callq 0xcc70
nop