Question: scrubs do elliot and jd end up together

Answer: Yes, In Season 9, it is revealed that J.D. and Elliot are in fact married and expecting a child. This is punctuated by an extremely awkward morning ritual in front of Elliot's class where J.D. kisses her stomach for every month she is pregnant and says ``and thank you for making mommy's boobs bigger''; Elliot then puts her breasts on his head. In their final appearance together, they go on a ``babymoon'', a romantic getaway for expecting parents.