new strategies to evaluate the reproductive tract microbiome

Conditions: Fertility; Infertility; Reproductive Health; Microbiome Analysis

Summary: the goal of this observational study is to evaluate alternative less invasive sampling methods for the analysis of the endometrial microbiome. for that, vaginal swab and endometrial fluid samples will be assessed in comparison with the standard sampling method (an endometrial biopsy), in women aged 18-50 years on an oocyte donation program and/or who attend the clinic for routine gynecological controls, and whose samples will be collected during the secretory phase of a natural menstrual cycle. the study aims to: * evaluate the pontential of the less invasive techniques to assess the endometrial microbiome, compared to the endometrial biopsy, as well as their safety. * evaluate the microbiome's stability in a period of 1 to 3 months. participants will undergo a sampling round (of the 3 sampling methods), and then a second round 1, 2 or 3 months later, as assigned by the investigator.

the endometrium plays a pivotal role in reproductive health, influencing processes such as implantation and pregnancy. although the endometrium has generally been considered a tissue free of bacteria, numerous studies have documented the presence of an endometrial microbiome mainly composed of different species from the lactobacillus genus. the presence of pathogenic bacteria has been shown to disrupt the uterine environment, affecting implantation rates and pregnancy success. traditional and emerging sampling methods allow for the study of the microbial profile of the endometrium, but the efficiency and representativeness of these techniques vary. therefore, this study aims to compare the effectiveness, accuracy, and usefulness of three different sampling methods for microbiome analysis: endometrial biopsy, endometrial fluid, and vaginal swab. additionally, it seeks to compare the endometrial microbial profiles with the vaginal microbiome to assess whether it may provide indirect information about the upper reproductive tract. endometrial biopsy is a gynecological procedure routinely performed in the clinical practice to provide the patient with an analysis of their microbiome before embryo transfer, ensuring that it is carried out in a non-pathological endometrium, especially in patients with previous implantation failures. it is considered the standard for uterine lining sampling but is an invasive technique that, due to the discomfort associated with the procedure itself, may not always be feasible. endometrial fluid is a less invasive method that offers a potential alternative by collecting cells from the endometrial surface. on the other hand, studying the vaginal microbiome, although it may provide insight into reproductive outcomes, may not accurately reflect the microbiome of the uterine cavity, a key location where implantation and pregnancy occur. by using comprehensive microbiome analysis techniques, this study will assess the microbial populations collected by each method and determine the efficiency and usefulness of each sampling technique. through direct comparison, this research aims to establish a clearer understanding of how sampling techniques can impact microbiome analysis in the context of reproductive health. the results obtained could have significant implications for clinical practice, potentially offering less invasive and more accurate methods to evaluate the endometrial microbiome. this study aims not only to redirect our approach to sampling the endometrial microbiome but also to improve our understanding of its role in female reproductive health. furthermore, it would facilitate the assessment of potential correlations between the endometrial and vaginal microbiomes.

Eligibility criteria:
inclusion criteria: * women, between 18 and 50 years, coming form the donor program and/or patients from the general gynaecology unit who attend to routine gynaecological controls to the clinic and who voluntarily accept to participate and sign the corresponding informed consent approved by the ethics committee, once they have been dully informed of the study's nature and knoe the potential risks, benefits and discomforts. exclusion criteria: * ongoing pregnancy. * samples not obtained during the secretory phase of a natural cycle. * intake of any antibiotic, probiotic and/or antifungal in the 7 days prior to the sample collection of the first cycle.

Keywords: endometrial microbiome microbiome reproductive tract pathogenic bacteria dysbiosis