IT-ZBMED/Agriculture_NER_Dataset_for_FAIR_Metadata_Enrichment huggingface dataset:
Title : 
  Abundance of different microorganism groups in soil and roots in a field trial on starter fertilization and application of plant growth - promoting microorganisms 
 Abstract_text_1 : 
  Abundance of different microorganism groups in soil and roots in a field trial on starter fertilization and application of plant growth - promoting microorganisms . 
 Abstract_text_2 : 
  Fertilizer experiments were carried out as plot trials on maize fields over the years 2021 , 2022 and 2023 . The fields investigated were Wanna Sand ( WS ) , Wanna Sand without biogas slurry ( WSo ) , Rostock Sand ( RS ) and Wanna Marsch ( WM ) . On the WS and WM fields , 30 m³ of biogas slurry was applied before the experiment . Starter fertilization was carried out with diammonium phosphate ( DAP ) , microgranular fertilizer ( MG ) and without ( control ) . In addition , a microorganism preparation ( MO ) consisting of three mycorrhizal species : R. irregulare , F. mosseae , F. caledonium and Bacillus atrophaeus Abi05 was applied to half of the plots . Soil samples were taken between April and August each year . During the vegetation period , the soil was sampled in and between the maize rows . At some sampling times , additional mixed samples were taken plot by plot . Before the experimental setup samples were taken in blocks or randomly . The abundances of the following microorganism groups were determined using qPCR : Acidobacteria , Actinobacteria , Alpha - Proteobacteria , Beta - Proteobacteria , Cyanobacteria , Firmicutes , Alternaria , Fusarium , Bacillus atrophaeus Abi05 and total fungal population . In addition to the soil samples , root samples were also taken at certain times . The rate of mycorrhization was determined and in some cases DNA was extracted and qPCR measurements were carried out . This table contains the Index of the data collection . Related datasets are listed in the metadata element ' Related Identifier ' . Dataset version 1.0 
 Keywords : 
  Soil , maize , field experimentation , soil microorganisms , Fungi , Bacteria , arbuscular mycorrhiza , quantitative polymerase chain reaction , fertilization , opendata , Boden , Europe , Germany , Lower Saxony , Wanna , Mecklenburg - Vorpommern , Rostock
Title : 
  Microclimatic data along a gradient from kettle holes to agricultural fields in the AgroScapeLabs Quillow 2019 
 Abstract_text_1 : 
  Microclimatic data along a gradient from kettle holes to agricultural fields in the AgroScapeLabs Quillow 2019 . 
 Abstract_text_2 : 
  Ten kettle holes within six agricultural fields ( crop : winter wheat ) were selected for monitoring microclimatic conditions around the kettle holes . For this purpose we have established a transect starting from the edge of the kettle holes up to 50 m into the surrounding wheat fields . As a control , transects were established from the field edge into the wheat field . Along these transects microclimatic observation stations were installed at 5 different distances ( -1 m ; 1 m ; 5 m ; 20 m ; 50 m ) . At each point air temperature and air humidity were monitored during the growing season of wheat plants ( between April and June 2019 ) Research domain : Ecology of Agricultural Landscapes 
 Keywords : 
  climatic factors , environmental factors , measurement , production location , climate system , ecosystems , opendata , Boden , Bewirtschaftungsgebiete / Schutzgebiete / geregelte Gebiete und Berichterstattungseinheiten , Lebensräume und Biotope , Meteorologisch - geografische Kennwerte , Germany , Brandenburg , Uckermark , Quillow
Title : 
 Bodendruck , -setzung und Änderungen bodenphysikalischer Parameter durch Befahrung mit einem Mähdrescher i m Jahr 2017 

 Abstract : 
 Dieser Datensatz enthält Bodendaten aus einem Befahrungsversuch mit einem landwirtschaftlichen Fahrzeug ( 2 - achsiger Mähdrescher mit Bunker ; Gesamtgewicht : 17 t ) . Der Versuch fand 2017 während der Ernte statt . Der Boden , eine pseudovergleyte Parabraunerde aus Löss , wurde bis 28 cm Tiefe bearbeitet . Der Mähdrescher fuhr nacheinander über definierte Plots . I m Kernfeldbereich wurden zwei und i m Vorgewende acht Überrollungen durchgeführt . Vor den Befahrungen wurde je Variante eine , nach den Befahrungen zwei Gruben ausgehoben . Folgende Messungen wurde in 20 , 35 und 50 cm Tiefe je Grube durchgeführt : Bodendruck und plastische Bodensetzung Wasserretentionseigenschaften , Lagerungsdichte und gesättigte hydr . Leitfähigkeit ( 100 cm3 Stechzylinder ; je 5 Wiederholungen pro Grube und Tiefe ) . Daraus abgeleitet wurden Gesamtporenvolumen , Luftkapazität , Feldkapazität , permanenter Welkepunkt und Trocken - rohdichte Bioporen wurden in jeder Grube und Tiefe gezählt
Title : 
  Lysimeter data Rostock : Redox potential , pH and element concentrations of pore water in 2020 
 Abstract_text_1 : 
  Lysimeter data Rostock : Redox potential , pH and element concentrations of pore water in 2020 . 
 Abstract_text_2 : 
  The dataset contains soil pore water data from three sampling depths of three soil profiles from along a hill slope in Northern Germany . Data inform about weekly redox potential ( Eh ) , pH and element concentrations ( TC , IC , OC , TN , NH4 + -N , NO2- -N , NO3- -N , PO43- -P , total Ca , P , Fe , Al , and Mn ) in filtered ( 0.45 µm ) soil pore water samples collected in 2020 . Research domain : Soil Sciences Research question : Controlled drainage may affect phosphorus mobilization in soil . To assess P mobilization at different redox conditions , three soil profiles with redoximorphic features were selected along a slight hill slope and lysimeter monoliths were collected by drilling in 2018 . Lysimeters had been cropped with spring barley and catch - cropped with serradella in 2019 . Also in 2020 , lysimeters were cropped with spring barley and water levels of the monoliths were adjusted to high and low water table to mimic closed and open drainage , respectively . The redox potential ( Eh ) was measured in situ and pore water was sampled weekly from three different depths of the lysimeters to determine pH and the element concentrations total C , N , P , Al , Fe , Mn , and Ca as well as inorganic and organic C ( DIC , DOC ) , PO43 - -P , NH4 + -N , NO2 - - and NO3 - -N- in solutions ( 0.45 µm ) . Thus , information about different element concentrations at different redox potentials and pH was gained over a period of about 3.5 months in 2020 . 
 Keywords : 
  , specific UV absorbance ( SUVA ) , Boden , Bodenwasser , Phosphor , Gel√∂ster organischer Kohlenstoff , Kohlenstoff , Nitrat , Nitrit , Aluminium , Calcium , Eisen , pH - Wert , Phosphat , Ammonium , Stickstoff
Title : 
  Soil Bacterial Community IOSDV Speyer , Germany 
 Abstract_text_1 : 
  Soil Bacterial Community IOSDV Speyer , Germany      . 
 Abstract_text_2 : 
  Organic and mineral fertilization in combination are relevant factors which are controlling availability of mineral nutrients and humus development . In contrast to mineral fertilizer , humus acts as long - term source of nutrients and is a basis element of soil fertility . The international fertilization trial ( IOSDV ) at the research facility Rinkenbergerhof at the LUFA Speyer ( Germany ) was set up in the year 1984 and planted with a repeating crop rotation : winter wheat , winter barley , and sugar beet . This data set comprises only the soil management variant “ ploughing ” . Other treatment factors were : ( 1 ) no organic amendment , farmyard ( horse ) manure treatment every three years to sugar beet fields , and crop residues + catch crop treatment ; ( 2 ) without and with mineral N fertilization . More experimental details are available in German from the LUFA Speyer ( Germany ): VDLUFA , 121 . VDLUFA - Kongress , Kongressband , Teil 2 , Beiträge aus den öffentlichen Sitzungen der Fachrichtung Pflanzen- und Tierproduktion am 16 . September 2009 , Karlsruhe , Schriftenreihe Bd . 65/2009 , ISBN 978 - 3 - 941273 - 07 - 8 ( German ): https://www.vdlufa.de/kongress2009/KB2009Teil2.pdf . Parameters of the data set were determined on basis of standardized VDLUFA and DIN guidelines by the LUFA Speyer ( Germany ) . The data set contains data of 72 samples , which were sampled during four sampling seasons with winter barley and sugar beet as crop plant and contained 3 field replicates of 6 treatment combinations . The bacterial bulk soil community structure of all samples was characterised by amplicon sequencing of the V1 - V2 region of the bacterial 16S rRNA gene using primers 27F ( 5′-AGAGTTTGATCMTGGC-3′ ) and 357R ( 5'-CTGCTGCCTYCCGTA-3 ' ) . Results show that the bacterial community in the long term is mainly altered by mineral fertilization and , on a lower level by horse manure . The bacterial class Bacilli was an evident positive responder to manure application . However , both manure and crop residues are valueable amendments for farmland , since both mitigate the negative effects of mineral fertilizer on the connectivity of bacterial interaction networks . Related publications : Schmid , C. A. , Schröder , P. , Armbruster , M. , & Schloter , M. ( 2017 ) . Organic Amendments in a Long - term Field Trial — Consequences for the Bulk Soil Bacterial Community as Revealed by Network Analysis . Microbial Ecology , 1 - 14 . Download : https://www.ncbi.nlm.nih.gov/bioproject/PRJNA388309 
 Keywords : 
  agriculture , Agricultural research , Organic amendments , nitrogen fertilizers , Seasonal development , Ploughing , Nutrient availability , soil fertility , Stickstoffd체nger , Tiermist , Fruchtfolge , Landwirtschaft , N채hrstoffgehalt , Langzeitversuch , Nutzpflanzenproduktion , opendata , Boden , inspireidentifiziert
Title : 
 Phenotypic variation in 1,100 provenances of Picea abies measured over 50 years on 33 German trial sites 

 Abstract : 
 This database provides phenotypic traits of Norway spruce ( Picea abies ( L. ) Karst . ) measured over a period of 51 years in provenance trials planted across Western Germany . These trials are part of the ‘ Inventory Provenance Test 1964/68 with Norway spruce ’ ( IPTNS ) that tests a total of 1,100 seed sources collected across Europe , both from the species natural as well as artificial range . Individual tree measurements of height ( age 7 , 10 , 13 , 16 ) and diameter at breast height ( age 16 , 21 , 29 , 39 , 51 ) are provided for 33 German trial sites of 100 provenances . Each set of 100 provenances is a subsample from the entire collection area that represents an approximately comparable climate space .
Title : 
 Dataset : Temporal dynamics in the compositional relationships of cropland microbiomes 

 Abstract : 
 Die hier hinterlegten Daten beziehen sich auf die Publikation von Forschungsergebnissen i m Zusammenhang mit dem MonViA Projekt ( Monitoring von biologischer Vielfalt in Agrarlandschaften ) . Auf drei benachbarten Feldern eines landwirtschaftlichen Betriebs in der Nähe von Hildesheim wurden in einem 14 - tägigen Zeitraster die Abundanz und Vielfalt der bodenmikrobiologischen Lebensgemeinschaft über einen Zeitraum von 2 Jahren erfasst . Auf den Feldern , die sich in Bodentextur ( Lehm und Ton ) und Bodenbearbeitung ( konservierend und konventionell ) unterschieden , wurden landwirtschaftliche Maßnahmen nach herkömmlicher Praxis betrieben . Um Einflussfaktoren zu untersuchen , wurden parallel meteorlogische Daten und physikochemische Bodeneigenschaften erfasst ( pH Wert , Gehalte an organischen Kohlenstoff und Gesamt - Stickstoff ) . Zur mikrobiologischen Charakterisierung wurde Boden - DNA mit PCR Verfahren untersucht . Die Abundanz wurde mit quantitativer PCR ( qPCR ) bestimmt , die Vielfalt mit der Sequenzierung von PCR Produkten mit Hilfe der IlluminaMiSeq Technologie .
Title : 
  Field experiment FV 4 Braunschweig – harvest of winter barley 2014 
 Abstract_text_1 : 
  Field experiment FV 4 Braunschweig – harvest of winter barley 2014 . 
 Abstract_text_2 : 
  The phosphorus ( P ) taken up by organisms can not be substituted from any other element ; the only source of an increasing P demand for feeding the growing global population is mineable rock phosphate , upgraded to mineral P fertilizer . There are concerns about the global reserves of rock phosphates , expressed in terms of “ peak phosphorus ” ( demand production ) . Bone char ( BC ) produced of de - fatted and de - gelatinized bones ( 15 % P , 28 % Calcium , 1 % Magnesium ) from slaughterhouses by a pyrolysis process could be an alternative source of P. Phosphorus in BC is mainly bound in a structure similar to hydroxylapatite ( HA ) in accordance with their origin from bones . Generally , P in HA is of low solubility and , consequently , it can not be expected that bones or BC have a high fertilization value . Consequently , further attempts were directed to increase the P solubility of BC by a sulfur ( S ) enrichment leading to so called BCplus ( patent DE102011010525 ) . A former long - term field P fertilization trial ( 1985 - 2008 ) led to distinctive differences in available soil P ( PCAL ) concentrations . For some detailed description of the former experiment and further soil information see : Vogeler , I. ; Rogasik , J. ; Funder , U. ; Panten , K. ; Schnug , E. ( 2009 ) Effect of tillage systems and P - fertilization on soil physical and chemical properties , crop yield and nutrient uptake . Soil and Tillage Research 103 ( 1 ): 137 - 143.The resulting differences in soil P were conserved below an extensively managed grassland until 2013 when the experiment was ploughed to a depth of 25 cm and oat was seeded . After the harvest of 2013 , the newly designed experiment ( FV 4 ) was established testing the fertilizing potential of BC and BCplus . According to their mean PCAL concentrations ( 0 - 30 cm ) one third of the plots were assigned to soil class A ( 11 mg kg-1 PCAL ) , B ( 21 mg kg-1 PCAL ) , and C ( 47 mg kg-1 PCAL ) each . The experiment was set up as a completely randomized block design with three replicates , a plot size of 5.75 m * 17.5 m , and crop rotation of winter barley , winter oilseed rape , winter wheat , lupine and winter rye . Chisel ploughing and ploughing to a depth of 25 cm incorporates crop residues before seeding . Additionally to a control without P fertilization ( P0 ) , three different types of P fertilizer ( BC , BCplus , TSP ) are applied to an equivalent of 45 kg ha-1 P once a year shortly before seeding since autumn 2013 . This data set presents the first harvest of winter barley ( Hordeum vulgare L. , variety OTTO ) in 2014 . Research domain : Plant Nutrition 
 Keywords : 
  Soil , Phosphate fertilizers , Phosphates , Phosphate fertilizers , farm inputs , opendata , Boden
Title : 
  Interactive effects of microplastics with other environmental drivers in a plant - soil system 
 Abstract_text_1 : 
  Interactive effects of microplastics with other environmental drivers in a plant - soil system . 
 Abstract_text_2 : 
  Our study reveals the effects of GCFs on a soil - crop system : in general , with an increasing number of GCFs , soil properties , and plant biomass reacted negatively . For example , the higher the level of GCFs , the lower the plant biomass and soil water stable aggregation . We also find that MP applied as a single factor had minimal effects on soil properties and crop growth . However , when combined with other individual factors , it significantly altered the effect size , sometimes even causing directional change . Our results revealed that the interaction between MP and other GCFs is not an additive response . Due to the characteristics of MP , the interaction mechanism between heavy metal and MP is obviously different from the response between drought and MP , and their combined effects on the soil - plant system may fundamentally vary Factor interactions are key to understanding and predicting how GCFs influence soil and plants . With an increasing number of GCFs involved , it becomes more and more complicated to predict effects on ecosystems . Our study is among the first to systematically examine how microplastic acts in combination with a range of other important environmental drivers , and thus offers a first step toward understanding these elusive interactive effects . 
 Keywords : 
  Soil , microplastics , opendata , Multiple level ; Winter wheat ; Plant - soil system ; Soil properties ; Global change factors , Boden
Title : 
 sorcering : Soil ORganic Carbon & CN Ratio drIven Nitrogen modellinG framework 

 Abstract : 
 SORCERING can be used to model the fate of soil organic carbon ( SOC ) and soil organic nitrogen ( SON ) and to calculate N mineralisation rates . It provides a framework that numerically solves differential equations of SOC models based on first - order kinetics . Thus , SOC models can be simply defined and run to predict the temporal development of SOC . Beyond this , SORCERING determines the fluxes of SON and N mineralisation / immobilisation . Basic inputs are ( 1 ) the model parameters of a given SOC model expressed as the C transfer matrix ( including information on decomposition and transfer rates between model pools ) , ( 2 ) the initial distributions of C and N among model pools and ( 3 ) time series of C and N inputs and rate modulating environmental factors . The fourth - order Runge - Kutta algorithm is used to numerically solve the system of differential equations .
Title : 
 BWI 2012 Umweltdatenbank Bodenprofile 

 Abstract : 
 Ziel des Moduls Bodenprofile i m Projekt WP - KS - KW ( Waldproduktivität - Klimawandel - Kohlenstoffspeicherung ) war es , für 26.450 Punkte der deutschen Bundeswaldinventur ( BWI ) Bodenleitprofile mit boden - physikalischen Grundlagendaten zu erstellen . Die Grundlage der Ableitung der Standorts- und Bodeninformationen bildeten die in den Bundesländern zur Verfügung stehenden Informationen aus der Standorts- und Bodenkartierung . Um den oft historisch gewachsenen Feinheiten der einzelnen Kartierungsverfahren gerecht zu werden , wurden Standorts- und Bodenkundler aus jedem Bundesland in das Projekt eingebunden . Für 26.450 Traktecken wurden Standorts- und Leitprofildaten nach einheitlichen Vorgaben erhoben und in der Datenbank zusammengeführt . Das Parameterspektrum umfasst i m Wesentlichen : ( 1 ) Standortseinheit mit Bodentyp , Wasserhaushalts-/ Nährstoffansprache , Kalkung , ( 2 ) Leitprofil mit obligatorischen Horizontangaben zu Bodenart , Skelett , Trockenrohdichte ( TRD ) , nutzbare Feldkapazität ( nFK ) , ( 3 ) Leitprofil mit fakultativen Horizontangaben zu Basensättigung , organischer Kohlenstoffgehalt ( Corg ) , Entkalkungstiefe , ( 4 ) Quellen- und Qualitätsschlüssel zu allen Parametern . Die Standortseinheit liegt für 25.069 ( 95 % ) Traktecken vor , das Leitprofil für 24.735 ( 93.5 % ) . Creation date : 28.05.2019 ; temporal coverage : start date : 2012 , end date : 2012 ; state : finalisiert / finalized
Title : 
 Crop yields and area in Germany from 1979 to 2021 at a harmonized district - level 

 Abstract : 
 In this publication we provide a dataset with crop yield and area for Germany from 1979 to 2021 . The data are spatially resolved to 397 districts with an average size of 900 km2 and include the crops spring barley , winter barley , grain maize , silage maize , oats , potatoes , winter rape , rye , sugarbeet , triticale and winter wheat . The crop - yield data cover on average about 9.5 million hectares per year and 80 % of Germany ’s total arable land . The final dataset contains 214,820 yield and area data points . These were obtained by collecting and digitizing crop data from multiple statistical sources and transforming the data to match the district boundaries in 2020 . A comprehensive description and validation of the dataset is published in Scientific Data ( https://doi.org/10.1038/s41597-024-02951-8 ) . We therefore recommend that you also refer the Scientific Data article when using the dataset .
Title : 
 Supporting data for the manuscript ‘ Birch ( Betula pubescens Ehrh . ) encroachment alters contribution of plant functional groups to ecosystem carbon cycling in a rewetted bog ’ 

 Abstract : 
 Rewetted bogs with high water levels ( WL ) and mire - specific vegetation are crucial carbon ( C ) sinks , but their function might be threatened by tree encroachment , a phenomenon widespread in the northern hemisphere that often coincides with low WL . This might impact C cycling both at the ecosystem and microform scale in multiple ways , but so far , data is lacking . We established two sites in the same former peat extraction area , one showing permanently high WL and mire - specific vegetation ( Open site , OS ) , while the other one has more fluctuating WL and a dense birch ( Betula pubescens Ehrh . ) population ( Tree site , TS ) . We measured the carbon dioxide ( CO2 ) exchange at ecosystem ( eddy covariance ) and plot scale ( chamber measurements ) for one year to clarify the differences between the sites and the impact of birch encroachment on the contribution of the different bog - specific microforms to the ecosystem ’s CO2 balance . Overall , the OS had a CO2 balance of -262.4 ± 7.8 g CO2 - C m-2 yr-1 indicating CO2 uptake , while the TS was close to neutral ( -28 ± 5.1 g CO2 - C m-2 yr-1 ) . The smaller uptake at the TS was caused by higher ( 151 % ) ecosystem respiration , while gross primary production was only 15 % difference . However , the microform contributions to C uptake strongly differed : At the OS , both hummocks and hollows showed net uptake , while at the TS , most C ( 52 % ) was assimilated by the birches and the understory was a net CO2 source . This indicates a loss of peat C from the TS , while the successfully rewetted site was accumulating new peat . Accounting for plot - scale CH4 fluxes , both sites were a weak source of greenhouse gases , but a distinctly stronger C sink occurred at the OS . Our data shows the possibility to increase C removal from the atmosphere by full rewetting and the establishment of mire - specific vegetation .
Title : 
 Microsatellite marker data of Helosciadium nodiflorum L. 

 Abstract : 
 The development of SSR markers was performed by SGS Trait Genetics GmbH ( Gatersleben , Germany ) using a proprietary standard protocol . The nuclear DNA was extracted from the H. nodiflorum type line ( Kew Gardens London , Ser . No 0200497 ) . The partial sequencing was carried out with MiSeq ( Illumina ) equipment . Seventeen SSRs proved to be polymorphic and were applied to study the patterns of genetic diversity within diploid Helosciadium nodiflorum . The results of the study will likely be published by I. Mewis , A. Naumann , M. Zander , U. Schirmak , M. Nachtigall , M. Bönisch , L. Frese , C. Ulrichs . ( in prep . ): Evaluation of genetic diversity of Helosciadium nodiflorum in Germany – A wild relative of celery . 
  SSR data presented in the excel file were generated by HU Berlin , Germany . Helosciadium nodiflorum plants were sampled at 20 localities in 2015 or 2016 and analyzed using 17 polymorphic SSR markers . All individuals ( 86 in total ) having a null allele at any of the marker loci were excluded from the dataset presented here . The raw data were binned and statistically analyzed in 2018 - 2019 . The data sheet contains information on 514/600 plants in total , respectively . 
  The genetic reserves for wild celery species are part of a nationwide " Network of Genetic Reserves in Germany " ( https://www.genres.de/fachportale/kultur-und-wildpflanzen/in-situ-erhaltung-von-wel/netzwerk-genetische-erhaltungsgebiete-deutschland/ ) . The intraspecific diversity of wild celery species was assessed and representative plant populations maximizing this diversity were selected . A network of genetic reserves , comprising at least 45 plant populations , is to ensure that the intraspecific diversity of the wild celery relatives is preserved .
Title : 
 Dataset : Identification of markers associated with Wheat dwarf virus ( WDV ) tolerance / resistance in barley ( Hordeum vulgare ssp . vulgare ) using Genome wide association studies 

 Abstract : 
 Wheat dwarfing virus ( WDV ) is transmitted by the leafhopper Psammotettix alienus and causes yield losses in barley and other cereals . To date , little evidence of WDV - resistant / tolerant cultivars has been published , and no information is available for associated markers and QTL to WDV in barley . Therefore , identification of genetic factors controlling WDV to reduce the negative impact of WDV on yield plays an important role in resistance breeding . In this study , we examined a set of 480 barley genotypes to identify genotypic differences in response to WDV . Five traits , including infection rate ( ELISA 60 ) , total grain weight , plant height , number of ears per plant and thousand grain weight , were measured under infected and uninfected conditions . Finally , phenotypic and genotypic data of 191 out of 480 genotypes were used for a genome - wide association study ( GWAS ) . A set of 34 , 408 single nucleotide polymorphisms ( SNPs ) were identified on the 50 K iSelect array . In total , 1 , 3 , 2 , 2 , and 1 significantly associated markers on chromosomes 3H , 4H , 5H , and 7H were identified for ELISA-60 , relative performance of total grain weight , plant height , number of ears per plant , and thousand grain weight ( on chromosome 7H ) , respectively .
Title : 
 Microsatellite marker data of Apium graveolens L. ssp . graveolens 

 Abstract : 
 Published microsatellite primers were evaluated to identify polymorphic markers . Sixteen SSRs proved to be polymorphic and were applied to study the patterns of genetic diversity within diploid Apium graveolens . The results of the study were published by Frese , L. , Bönisch , M. , Nachtigall , M. , Schirmak , U. ( 2018 , accepted ): Patterns of genetic diversity and implications for in situ conservation of wild celery ( Apium graveolens L. ssp . graveolens ) . Agriculture , Vol . 8 . 
  SSR data presented in excel file were generated by JKI in Quedlinburg , Germany . A total of 790 Apium graveolens plants were sampled at 27 localities in 2016 and analyzed using 16 SSR markers . All individuals ( 33 individuals in total ) having a null allele at any of the marker loci were excluded from the dataset . The raw data were binned and statistically analyzed in 2017 - 2018 . The dataset presented here contains information on 757 plants .
Title : 
 Datensatz mit Fragebögen zur Analyse von Lebensmittelverlusten bei Obst und Gemüse auf Erzeugerebene und in der Wertschöpfungskette 

 Abstract : 
 Der Datensatz enthält 8 Fragebögen für persönliche Interviews mit Entscheidungstragenden auf Erzeugerebene und in der Wertschöpfungskette zur Analyse der Lebensmittelverluste : - i m Freilandanbau von Möhre , Salat , Apfel und Erdbeere , - i m geschützten Anbau von Erdbeere und Himbeere und - in Verarbeitung und Lebensmitteleinzelhandel
Title : 
 Calculations of gaseous and particulate emissions from German agriculture 1990 - 2017 : Input data and emission results 

 Abstract : 
 In international conventions Germany has committed to the mitigation of emissions of greenhouse gases and air pollution . These international regulations ( protocols etc . ) are the UN Framework Convention on Climate Change ( UNFCCC ) , the UNECE Convention on Long - Range Transboundary Air Pollution ( CLRTAP ) , and within the European Union the Directive of the European Parliament and of the Council on national emission ceilings for certain atmospheric pollutants ( NEC Directive ) . These conventions require annual calculations of the emissions of the respective gases and air pollutants . The results have to be documented in an emission inventory and to be reported to the organisations in charge . The data file contains input data and results of the calculation of gas and particulate emissions from German agriculture for Germany and the federal states in the years 1990 - 2017 . In this context the sector Agriculture comprises the emissions from animal husbandry , the use of agricultural soils and anaerobic digestion of energy crops . As required by the guidelines , emissions from activities preceding agriculture , from the use of energy and from land use change are reported elsewhere in the national inventories .
Title : 
 BWI 2012 Umweltdatenbank   Klima 

 Abstract : 
 The module climate regionalization of the project “ Forest productivity , carbon sequestration , climate change ” contributes temporal and spatial high - resolution climate data from 1961 - 2100 for 26.450 points of the German National Forest Inventory . For the retrospective computation of the period 1961 - 2013 the historical daily observation data of climate and precipitation stations of the Deutscher Wetterdienst are regionalized with Geographically Weighted Regression . Future climate change scenarios are simulated with the STARS ( 2011 – 2050 ) and REMO ( 2011 – 2100 ) based on the MPI ESM ECHAM6 RCP scenarios ( 2.6 , 4.5 , 8.5 ) . The NFI 2012 environmental data base climate contains timely aggregated climate information ( monthly , seasonal , yearly , multiyearly ) and provides the climatic input variables for the forest site water budget modelling and for the forest growth modelling . Creation date : 31.12.2016 ; State : Completed ; Sqlite3 Database ( * .sqlite ) ; Temporal coverage : 01.01.1961 - 31.12.2099 minimum longitude ( x min in decimal degree ): 5,79922100 ; maximum longitude ( x max in decimal degree ): 15,08954000 ; minimum latitude ( y min in decimal degree ): 47,15766000 ; maximum latitude ( y max in decimal degree ): 55,08484000
Title : 
 Dataset for " Towards an ecosystem capacity to stabilise organic carbon in soils " 

 Abstract : 
 This dataset includes the data that was used in the Global Change Biology publication " Towards an ecosystem capacity to stabilise organic carbon in soils " by Poeplau et al .. It contains two xlsx files , with dataset_full.xlsx including all sites with soil properties that were used in the first part of the manuscript . It is a combined dataset from several open source datasets with a total of 1396 individual sites . The file modelled_converged.xlsx includes the RothC model results of a total of 587 sites , for which modelling was possible and a convergence of measured and modelled data was reached . Both files include two sheets , one with a short explanation of the variable names and one data sheet .
Title : 
 Data to : Development and application of a molecular marker resource for improving drought stress tolerance in rye ( Secale cereale L. ) 

 Abstract : 
 Rye ( Secale cereale L. ) is an important cereal crop in Northern Europe and known for its outstanding tolerance to biotic and abiotic stress including drought . Although the application of next generation sequencing increased the genomic resources for rye significantly , only limited knowledge is yet available on transcripts involved in drought stress tolerance . To identify and map respective genes , transcription profiling combined with in silico mapping of drought - regulated transcripts was performed . Two elite inbred lines of a German hybrid breeding program were exposed to drought under controlled conditions . RNA - seq was performed on cDNA libraries from leaves and from a bulk comprising flag leaves , ears and shoots , respectively .   Each of these libraries was derived from both , a stressed and a well - watered variant , resulting in four libraries per genotype , i.e. eight libraries in total . The resulting sequence information supplemented the expressed sequence tag ( EST ) resource available for rye with 128,010 contigs ( S1.fasta ) . Gene expression was quantified by DeepSuperSAGE tag - based transcription profiling and the response to stress of 47,842 transcripts was determined with respect to drought treatment , genotype and tissue ( S3.tsv ) . In addition , 19,826 single nucleotide polymorphisms ( SNP ) between the two genotypes ( S2.tsv ) were detected in 4,437 of the differentially expressed genes ( S4.fasta ) . The chromosomal location of 2,869 transcripts was predicted by comparative mapping using the genome zipper linear gene order model of cereals ( S5.tsv ) . The gene expression data and polymorphisms established here provide a deeper insight in the molecular basis of drought stress response in rye ( S6.tsv ) and will help to further promote breeding for abiotic stress tolerance in rye and in closely related important cereals . To evaluate the data a bi - parental population was genotyped with the marker resource and phenotyped . Subsequently a genetic map was built ( S7.tsv ) , and a QTL mapping conducted to prove the value of the newly developed resource .
Title : 
 GHG - DB - Thuenen – Multi - variable experimental data set of agronomic data and gaseous soil emissions of energy crop cultivation at eight sites in Germany 

 Abstract : 
 The database ( GHG - DB - Thuenen ) contains gaseous emission data as well as agronomic variables and management activities for three years ( 2011/2012 – 2014/2015 ) at eight field trials in Germany derived from two joint research projects . The database was developed with Microsoft Access Database 2007 - 2016 and stores 43 million records . Multi - variable data sets consists of gas fluxes ( carbon dioxide , nitrous dioxide , methane and ammonia ) , crop parameters ( ontogenesis , aboveground biomass , grain and straw yield , N and C content , etc . ) , soil characteristics ( nitrogen content , ammonium - N , nitrate - N , bulk density etc . ) , continuously recorded meteorological variables ( air and soil temperatures , radiation , precipitation , etc . ) , management activities ( sowing , harvest , soil tillage , fertilization , etc . ) , and its metadata ( methods , further information about variables , etc . ) . In addition , N2 data were measured and analyzed . Also available are site - specific calculated C and N balances for the respective crops and crop rotations .
Title : 
 Segmentation of wine berries 

 Abstract : 
 Dataset contains high resolution images collected with a moving field phenotyping platform , the Phenoliner . 
  The collected images show 3 different varieties ( Riesling , Felicia , Regent ) in 2 different training systems ( VSP = vertical shoot positioning and SMPH= semi minimal pruned hedges ) , collected in 2 points in time ( before and after thinning ) in 2018 . For each image we provide a manual masks which allow the identification of single berries . 
  The folder contains : 1 . List with image details ( imagename , acquisition date , year , variety , training system and variety number)and 2 . Dataset folder with 2 subfolders , namely 1 . img – 42 original RGB images and 2 . lbl – 42 corresponding labels ( manual annotation , with berry , edge , background definition ) 
  The data were used to train a neural network with the main goal to detect single berries in images . The method is described in detail in the specified papers .
Title : 
 Root litter quality incubation experiment 

 Abstract : 
 The dataset contains data of a 2 - year incubation experiment of C4 roots litter added to a C3 soil . The soil was sampled after 6 , 12 and 24 months and fractionated into particulate organic carbon ( POC ) and mineral associated organic carbon ( MAOC ) and each fraction ( plus the bulk soil ) was measured for total carbon content as well as the abundance of the stable isotope 13C , to distinguish between old ( native ) and new ( added ) carbon . There are two files : One contains the raw data with measured C contents , delta 13C values , fraction weights and the subsequently calculated amounts of new and old carbon in all fractions . The second file is related to the first , but contains the final dataset which was used to produce the graphs and tables in the paper .
Title : 
 Raw data for " Plot - scale variability of organic carbon in temperate agricultural soils - Implications for soil monitoring " 

 Abstract : 
 This dataset is the raw data that belongs to a peer - reviewed study on the small - distance variability of soil organic carbon in agricultural soils in Germany . It consists of three different files . The first file gives the coordinates of the 16 soil cores that were taken at each of the 16 sites ( eight cropland and eight grassland sites ) . The second file gives the soil properties measured at each individual core ( n=16 per site ) and the third file the soil properties measured at each indivdual soil profile ( n=6 per site ) .
Title : 
 Three - year pesticide monitoring in ditches of the apple orchard region ' Altes Land ' 

 Abstract : 
 The data presented in this file are related to the research article ‘ Süß A ,   Bischoff G , Mueller A , Buhr L ( 2006 ) Chemical and biological monitoring of the load of plant protection products and of zoocoenoses in ditches of the orchard region ‘ Altes Land ’ . Nachrichtenblatt des Deutschen Pflanzenschutzdienstes 58:28 - 42 ’ which is only available in German language . The pesticide data presented here were acquired in four ditches in Lower Saxony , Germany ( three ditches located in apple plantations , one ditch located in grassland ) between 2001 and 2003 . Two different monitoring strategies have been applied ; event - driven sampling after pesticide applications and weekly integrated sampling using automatic water samplers . A total of 70 active substances have been monitored while farmers applied 25 active substances . LC - MS / MS ( PE Sciex API 2000 ) , GC - MS ( Finnigan GCQ ) , GC coupled with electron capture detector ( ECD ) and inductively coupled plasma optical emission spectrometry ( ICP - OES ) were used for identification and quantification of the target substances .
Title : 
 Dataset : Residues of boscalid and pyraclostrobin in several bee matrices along the transfer pathway from plants to larvae 

 Abstract : 
 The data set contains the raw data for the corresponding publication Wueppenhorst et al . ( 2024 ) https://doi.org/10.1016/j.cub.2024.10.008 Residues of two commonly used fungicides ( boscalid and pyraclostrobin ) were measured in several bee matrices along a transfer pathway from plants to larvae . The samples were collected simultaneously at five different locations in Germany ( Bochum , Braunschweig , Celle , Hohenheim , Veitshöchheim ) from spring 2022 to spring 2023 . Therefore a field study was carried out in which honey bee colonies were placed to oilseed rape ( Brassica napus , OSR ) fields . The formulation Pictor ® Active was applied to the treatment field site according to label instructions at the maximum field recommended rate of 1 L ( product)/ha . No applications were conducted at a second field site , which was designated as the negative control . Samples of plant inflorescences , honey bee pollen baskets , honey sacs , stored pollen and nectar , in - hive bees , larval food jelly ( royal , worker , and drone jelly ) , and larvae ( queen , worker , and drone larvae ) were collected in a time dependent interval and analyzed for residues of the active ingredients . The data set contains all raw data of the measured residue concentrations within each sample . Detailed information about the sampling and methodology can be found in the corresponding publication .