Model: JerryO3/test
Author: JerryO3
Pipeline: sentence-similarity
Library: sentence-transformers
Tags: sentence-transformers, safetensors, nomic_bert, sentence-similarity, feature-extraction, generated_from_trainer, dataset_size:1453, loss:MatryoshkaLoss, loss:MultipleNegativesRankingLoss, custom_code, en, arxiv:1908.10084, arxiv:2205.13147, arxiv:1705.00652, base_model:nomic-ai/nomic-embed-text-v1.5, base_model:finetune:nomic-ai/nomic-embed-text-v1.5, license:apache-2.0, model-index, text-embeddings-inference, endpoints_compatible, region:us
Base models (finetune): id: nomic-ai/nomic-embed-text-v1.5
Card metadata: language: en
license: apache-2.0
library_name: sentence-transformers
tags: sentence-transformers, sentence-similarity, feature-extraction, generated_from_trainer, dataset_size:1453, loss:MatryoshkaLoss, loss:MultipleNegativesRankingLoss
base_model: nomic-ai/nomic-embed-text-v1.5
metrics: cosine_accuracy@1, cosine_accuracy@3, cosine_accuracy@5, cosine_accuracy@10, cosine_precision@1, cosine_precision@3, cosine_precision@5, cosine_precision@10, cosine_recall@1, cosine_recall@3, cosine_recall@5, cosine_recall@10, cosine_ndcg@10, cosine_mrr@10, cosine_map@100
widget: source_sentence: We therefore conducted a hospital based cross sectional study involving 101 HCWs from two facilities in Kumasi, Ghana to assess the level of preparedness of HCWs to respond to any possible EVD. METHODS: We administered a face-to-face questionnaire using an adapted WHO (2015) and CDC (2014) Checklist for Ebola Preparedness and assessed overall knowledge gaps, and preparedness of the Ghanaian HCWs in selected health facilities of the Ashanti Region of Ghana from October to December 2015. RESULTS: A total 92 (91.09%) HCWs indicated they were not adequately trained to handle an EVD suspected case. Only 25.74% (n = 26) considered their facilities sufficiently equipped to handle and manage EVD patients. When asked which disinfectant to use after attending to and caring for a suspected patient with EVD, only 8.91% (n = 9) could correctly identify the right disinfectant (χ(2) = 28.52, p = 0.001). CONCLUSION: Our study demonstrates poor knowledge and ill preparedness and unwillingness of many HCWs to attend to EVD. Beyond knowledge acquisition, there is the need for more training from time to time to fully prepare HCWs to handle any possible EVD case. Text: During the last outbreak of Ebola Virus Disease (EVD) and its consequential massive epidemic with very high mortality [1] , many health systems and services in West Africa were overwhelmed and disrupted.
sentences: How many facilities believed they were adequately equipped to handle Ebla virus disease?, What  developments have been made possible by the study of B-cell repertoire?, Where does the NLRP3 inflammasome activate after a SARS-CoV infection?, source_sentence: All inﬂuenza A pandemics since that time, and indeed almost all cases of inﬂuenza A worldwide (except- ing human infections from avian Viruses such as H5N1 and H7N7), have been caused by descendants of the 1918 Virus, including “drifted” H1N1 Viruses and reassorted H2N2 and H3N2 Viruses. The latter are composed of key genes from the 1918 Virus, updated by subsequently-incor— porated avian inﬂuenza genes that code for novel surface   *Armed Forces Institute of Pathology, Rockville, Maryland, USA; and TNational Institutes of Health, Bethesda, Maryland, USA proteins, making the 1918 Virus indeed the “mother” of all pandemics. In 1918, the cause of human inﬂuenza and its links to avian and swine inﬂuenza were unknown. Despite clinical and epidemiologic similarities to inﬂuenza pandemics of 1889, 1847, and even earlier, many questioned whether such an explosively fatal disease could be inﬂuenza at all. That question did not begin to be resolved until the 1930s, when closely related inﬂuenza Viruses (now known to be H1N1 Viruses) were isolated, ﬁrst from pigs and shortly thereafter from humans. Seroepidemiologic studies soon linked both of these viruses to the 1918 pandemic (8). Subsequent research indicates that descendants of the 1918 Virus still persists enzootically in pigs. They probably also circulated continuously in humans, undergoing gradual antigenic drift and causing annual epidemics, until the 1950s.
sentences: What causes Q fever?, What was the mean length of the sequenced read?, When was it  determined that the 1918  pandemic was caused by the H1N1 Influenza virus?, source_sentence: These results showed that CD3 + CD4 + T cells have obviously (P<0.01) increased ( Figure 5B ), nevertheless the CD3 + CD8 + T cells remarkably (P<0.05) declined ( Figure 5C ). After calculation, the ratio of CD4 + /CD8 + T cells increased ( Figure 5D ). This ratio could also further measure the immunity levels of piglets. Cytokine IL-1β and IL-10 levels were determined to evaluate cellular immune responses induced by B. subtilis-RC as shown in Figure 6A ,B. As we can see from the diagram, significantly (P<0.01) higher IL-1β and IL-10 were produced after oral administration with B. subtilis-RC than the other two groups. These all revealed that B. subtilis-RC could stimulate cytokines release to mediate communication with and between cells of the immune system, improving the mucosal immune response to PEDV infection. The PEDV neutralizing antibodies were detected by PRNT assay. Oral administration with B. subtilis-RC could effectively reduce the plaque-forming ability of PEDV (P<0.01) compared with other two groups in Figure 7 .
sentences: Why are antibody epitope based peptide vaccines are no longer an active research area?, What is a conclusion of  this study?, What is an effective indicator of a vaccine's ability to generate an immune response?, source_sentence: Many types of bacteriophage and engineered phage variants, including filamentous phage, have been proposed for prophylactic use ex vivo in food safety, either in the production pipeline (reviewed in Dalmasso et al., 2014) or for detection of foodborne pathogens post-production (reviewed in Schmelcher and Loessner, 2014) . Filamentous phage displaying a tetracysteine tag on pIII were used to detect E. coli cells through staining with biarsenical dye . M13 phage functionalized with metallic silver were highly bactericidal against E. coli and Staphylococcus epidermidis . Biosensors based on surface plasmon resonance (Nanduri et al., 2007) , piezoelectric transducers (Olsen et al., 2006) , linear dichroism (Pacheco-Gomez et al., 2012) , and magnetoelastic sensor technology (Lakshmanan et al., 2007; Huang et al., 2009) were devised using filamentous phage displaying scFv or conjugated to whole IgG against E. coli, Listeria monocytogenes, Salmonella typhimurium, and Bacillus anthracis with limits of detection on the order of 10 2 -10 6 bacterial cells/mL. Proof of concept has been demonstrated for use of such phage-based biosensors to detect bacterial contamination of live produce (Li et al., 2010b) and eggs (Chai et al., 2012) . The filamentous phage particle is enclosed by a rod-like protein capsid, ∼1000 nm long and 5 nm wide, made up almost entirely of overlapping pVIII monomers, each of which lies ∼27 angstroms from its nearest neighbor and exposes two amine groups as well as at least three carboxyl groups (Henry et al., 2011) . The regularity of the phage pVIII lattice and its diversity of chemically addressable groups make it an ideal scaffold for bioconjugation (Figure 3) . The most commonly used approach is functionalization of amine groups with NHS esters (van Houten et al., 2006 (van Houten et al., , 2010 Yacoby et al., 2006) , although this can result in unwanted acylation of pIII and any displayed biomolecules.
sentences: What is the contrast with SARS-COV and MERS=COV?, What is the structure of a filamentous phage particle?, Why do treatment and management vary in efficacy?, source_sentence: The monolayers were removed from their plastic surfaces and serially passaged whenever they became confluent. Cells were plated out onto 96-well culture plates for cytotoxicity and anti-influenza assays, and propagated at 37 °C in an atmosphere of 5% CO 2 . The influenza strain A/Leningrad/134/17/1957 H2N2) was purchased from National Control Institute of Veterinary Bioproducts and Pharmaceuticals (Beijing, China). Virus was routinely grown on MDCK cells. The stock cultures were prepared from supernatants of infected cells and stored at −80 °C. The cellular toxicity of patchouli alcohol on MDCK cells was assessed by the MTT method. Briefly, cells were seeded on a microtiter plate in the absence or presence of various concentrations (20 µM -0.0098 µM) of patchouli alcohol (eight replicates) and incubated at 37 °C in a humidified atmosphere of 5% CO 2 for 72 h. The supernatants were discarded, washed with PBS twice and MTT reagent (5 mg/mL in PBS) was added to each well. After incubation at 37 °C for 4 h, the supernatants were removed, then 200 μL DMSO was added and incubated at 37 °C for another 30 min.
sentences: What can be a factor in using common vectors for the delivery of vaccines?,  What can  some of the other activities of N have, be linked to?, What method was used to measure the inhibition of viral replication?
pipeline_tag: sentence-similarity
model-index: name: nomic-text-embed COVID QA Matryoshka test
results: task: type: information-retrieval
name: Information Retrieval
dataset: name: dim 768
type: dim_768
metrics: type: cosine_accuracy@1
value: 0.32098765432098764
name: Cosine Accuracy@1
verified: no, type: cosine_accuracy@3
value: 0.6049382716049383
name: Cosine Accuracy@3
verified: no, type: cosine_accuracy@5
value: 0.7222222222222222
name: Cosine Accuracy@5
verified: no, type: cosine_accuracy@10
value: 0.8580246913580247
name: Cosine Accuracy@10
verified: no, type: cosine_precision@1
value: 0.32098765432098764
name: Cosine Precision@1
verified: no, type: cosine_precision@3
value: 0.20164609053497942
name: Cosine Precision@3
verified: no, type: cosine_precision@5
value: 0.14444444444444443
name: Cosine Precision@5
verified: no, type: cosine_precision@10
value: 0.08580246913580246
name: Cosine Precision@10
verified: no, type: cosine_recall@1
value: 0.32098765432098764
name: Cosine Recall@1
verified: no, type: cosine_recall@3
value: 0.6049382716049383
name: Cosine Recall@3
verified: no, type: cosine_recall@5
value: 0.7222222222222222
name: Cosine Recall@5
verified: no, type: cosine_recall@10
value: 0.8580246913580247
name: Cosine Recall@10
verified: no, type: cosine_ndcg@10
value: 0.5726476297998092
name: Cosine Ndcg@10
verified: no, type: cosine_mrr@10
value: 0.4831545169508133
name: Cosine Mrr@10
verified: no, type: cosine_map@100
value: 0.4876624839192167
name: Cosine Map@100
verified: no, task: type: information-retrieval
name: Information Retrieval
dataset: name: dim 512
type: dim_512
metrics: type: cosine_accuracy@1
value: 0.3395061728395062
name: Cosine Accuracy@1
verified: no, type: cosine_accuracy@3
value: 0.6172839506172839
name: Cosine Accuracy@3
verified: no, type: cosine_accuracy@5
value: 0.691358024691358
name: Cosine Accuracy@5
verified: no, type: cosine_accuracy@10
value: 0.8395061728395061
name: Cosine Accuracy@10
verified: no, type: cosine_precision@1
value: 0.3395061728395062
name: Cosine Precision@1
verified: no, type: cosine_precision@3
value: 0.20576131687242796
name: Cosine Precision@3
verified: no, type: cosine_precision@5
value: 0.1382716049382716
name: Cosine Precision@5
verified: no, type: cosine_precision@10
value: 0.0839506172839506
name: Cosine Precision@10
verified: no, type: cosine_recall@1
value: 0.3395061728395062
name: Cosine Recall@1
verified: no, type: cosine_recall@3
value: 0.6172839506172839
name: Cosine Recall@3
verified: no, type: cosine_recall@5
value: 0.691358024691358
name: Cosine Recall@5
verified: no, type: cosine_recall@10
value: 0.8395061728395061
name: Cosine Recall@10
verified: no, type: cosine_ndcg@10
value: 0.5769674187028887
name: Cosine Ndcg@10
verified: no, type: cosine_mrr@10
value: 0.4942803252988438
name: Cosine Mrr@10
verified: no, type: cosine_map@100
value: 0.49996505521200235
name: Cosine Map@100
verified: no, task: type: information-retrieval
name: Information Retrieval
dataset: name: dim 256
type: dim_256
metrics: type: cosine_accuracy@1
value: 0.3148148148148148
name: Cosine Accuracy@1
verified: no, type: cosine_accuracy@3
value: 0.5864197530864198
name: Cosine Accuracy@3
verified: no, type: cosine_accuracy@5
value: 0.6604938271604939
name: Cosine Accuracy@5
verified: no, type: cosine_accuracy@10
value: 0.7901234567901234
name: Cosine Accuracy@10
verified: no, type: cosine_precision@1
value: 0.3148148148148148
name: Cosine Precision@1
verified: no, type: cosine_precision@3
value: 0.19547325102880658
name: Cosine Precision@3
verified: no, type: cosine_precision@5
value: 0.13209876543209875
name: Cosine Precision@5
verified: no, type: cosine_precision@10
value: 0.07901234567901234
name: Cosine Precision@10
verified: no, type: cosine_recall@1
value: 0.3148148148148148
name: Cosine Recall@1
verified: no, type: cosine_recall@3
value: 0.5864197530864198
name: Cosine Recall@3
verified: no, type: cosine_recall@5
value: 0.6604938271604939
name: Cosine Recall@5
verified: no, type: cosine_recall@10
value: 0.7901234567901234
name: Cosine Recall@10
verified: no, type: cosine_ndcg@10
value: 0.5454859667021819
name: Cosine Ndcg@10
verified: no, type: cosine_mrr@10
value: 0.46796492259455236
name: Cosine Mrr@10
verified: no, type: cosine_map@100
value: 0.4775435566293839
name: Cosine Map@100
verified: no, task: type: information-retrieval
name: Information Retrieval
dataset: name: dim 128
type: dim_128
metrics: type: cosine_accuracy@1
value: 0.2716049382716049
name: Cosine Accuracy@1
verified: no, type: cosine_accuracy@3
value: 0.5370370370370371
name: Cosine Accuracy@3
verified: no, type: cosine_accuracy@5
value: 0.654320987654321
name: Cosine Accuracy@5
verified: no, type: cosine_accuracy@10
value: 0.7283950617283951
name: Cosine Accuracy@10
verified: no, type: cosine_precision@1
value: 0.2716049382716049
name: Cosine Precision@1
verified: no, type: cosine_precision@3
value: 0.17901234567901234
name: Cosine Precision@3
verified: no, type: cosine_precision@5
value: 0.1308641975308642
name: Cosine Precision@5
verified: no, type: cosine_precision@10
value: 0.0728395061728395
name: Cosine Precision@10
verified: no, type: cosine_recall@1
value: 0.2716049382716049
name: Cosine Recall@1
verified: no, type: cosine_recall@3
value: 0.5370370370370371
name: Cosine Recall@3
verified: no, type: cosine_recall@5
value: 0.654320987654321
name: Cosine Recall@5
verified: no, type: cosine_recall@10
value: 0.7283950617283951
name: Cosine Recall@10
verified: no, type: cosine_ndcg@10
value: 0.4965852195530764
name: Cosine Ndcg@10
verified: no, type: cosine_mrr@10
value: 0.4220825984714875
name: Cosine Mrr@10
verified: no, type: cosine_map@100
value: 0.43352458189921866
name: Cosine Map@100
verified: no, task: type: information-retrieval
name: Information Retrieval
dataset: name: dim 64
type: dim_64
metrics: type: cosine_accuracy@1
value: 0.24074074074074073
name: Cosine Accuracy@1
verified: no, type: cosine_accuracy@3
value: 0.47530864197530864
name: Cosine Accuracy@3
verified: no, type: cosine_accuracy@5
value: 0.5864197530864198
name: Cosine Accuracy@5
verified: no, type: cosine_accuracy@10
value: 0.6728395061728395
name: Cosine Accuracy@10
verified: no, type: cosine_precision@1
value: 0.24074074074074073
name: Cosine Precision@1
verified: no, type: cosine_precision@3
value: 0.15843621399176952
name: Cosine Precision@3
verified: no, type: cosine_precision@5
value: 0.11728395061728394
name: Cosine Precision@5
verified: no, type: cosine_precision@10
value: 0.06728395061728394
name: Cosine Precision@10
verified: no, type: cosine_recall@1
value: 0.24074074074074073
name: Cosine Recall@1
verified: no, type: cosine_recall@3
value: 0.47530864197530864
name: Cosine Recall@3
verified: no, type: cosine_recall@5
value: 0.5864197530864198
name: Cosine Recall@5
verified: no, type: cosine_recall@10
value: 0.6728395061728395
name: Cosine Recall@10
verified: no, type: cosine_ndcg@10
value: 0.4508577703429953
name: Cosine Ndcg@10
verified: no, type: cosine_mrr@10
value: 0.3797864001567706
name: Cosine Mrr@10
verified: no, type: cosine_map@100
value: 0.39108804574508443
name: Cosine Map@100
verified: no
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Created: 2024-06-18 07:35:51