Model: imageomics/trait2vec
Author: imageomics
Pipeline: sentence-similarity
Library: sentence-transformers
Tags: sentence-transformers, safetensors, mpnet, ontology, nlp, biology, animals, fish, embedding, trait, sentence-similarity, feature-extraction, loss:CoSENTLoss, en, dataset:imageomics/char-sim-data, arxiv:1910.09700, base_model:sentence-transformers/all-mpnet-base-v2, base_model:finetune:sentence-transformers/all-mpnet-base-v2, doi:10.57967/hf/6892, license:mit, model-index, endpoints_compatible, region:us
Base models (finetune): id: sentence-transformers/all-mpnet-base-v2
Card metadata: license: mit
language: en
widget: source_sentence: Ventral humeral ridge: or not
sentences: If metasternum ossified, shape: long, narrow and tapering markedly anteriorly to posteriorly, length up to 3.5 times maximum width, Astragalus, dorsolateral margin:: overlaps the anterior and posterior portions of the calcaneum equally, Ulna size: does not apply, source_sentence: Form of distal portion of anteroventral process of ectopterygoid: varyingly falcate
sentences: Middle and distal radials in dorsal and anal fins: absent, Degree of development of primitively medial portion of fourth upper pharyngeal tooth-plate: fourth upper pharyngeal tooth-plate covers ventral, posterior, dorsal and sometimes anterior surfaces of fourth infrapharyngobranchial, Shape of pharyngeal apophysis (basioccipital): forked anteriorly, source_sentence: Form of distal portion of anteroventral process of ectopterygoid: varyingly falcate
sentences: parhypural: present, Epural: heavy, First infraorbital: short, source_sentence: Form of distal portion of anteroventral process of ectopterygoid: varyingly falcate
sentences: Dentary and angular: touch, Urohyal and first basibranchial: firmly attached, Supraneural 3-4 (nonadditive): absent, source_sentence: Form of distal portion of anteroventral process of ectopterygoid: varyingly falcate
sentences: Ventral diverging lamellae of mesethmoid: lamellae reduced or absent, Ventral ridge of the coracoid with a posterior process: absent, carpals: fully or partially ossified
pipeline_tag: sentence-similarity
library_name: sentence-transformers
base_model: sentence-transformers/all-mpnet-base-v2
metrics: pearson_cosine, spearman_cosine
model-index: name: SentenceTransformer based on sentence-transformers/all-mpnet-base-v2
results: task: type: semantic-similarity
name: Semantic Similarity
dataset: name: pheno dev
type: pheno-dev
metrics: type: pearson_cosine
value: 0.6082332469417436
name: Pearson Cosine
verified: no, type: spearman_cosine
value: 0.6250387873495056
name: Spearman Cosine
verified: no, task: type: semantic-similarity
name: Semantic Similarity
dataset: name: pheno test
type: pheno-test
metrics: type: pearson_cosine
value: 0.6822053314599665
name: Pearson Cosine
verified: no, type: spearman_cosine
value: 0.705688010939619
name: Spearman Cosine
verified: no
tags: ontology, nlp, biology, animals, fish, embedding, trait, sentence-transformers, sentence-similarity, feature-extraction, loss:CoSENTLoss
datasets: imageomics/char-sim-data
model_name: Trait2Vec
model_description: Language model for embedding organismal trait descriptions. Built using Sentence-Transformer architecture and trained with trait descriptions from Imageomics/char-sim-data.
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Created: 2025-10-26 20:27:24