Model: FareedKhan/Alibaba-NLP_gte-base-en-v1.5_FareedKhan_prime_synthetic_data_2k_10_32
Author: FareedKhan
Pipeline: sentence-similarity
Library: sentence-transformers
Tags: sentence-transformers, safetensors, new, sentence-similarity, feature-extraction, generated_from_trainer, dataset_size:1814, loss:MatryoshkaLoss, loss:MultipleNegativesRankingLoss, custom_code, arxiv:1908.10084, arxiv:2205.13147, arxiv:1705.00652, base_model:Alibaba-NLP/gte-base-en-v1.5, base_model:finetune:Alibaba-NLP/gte-base-en-v1.5, model-index, text-embeddings-inference, endpoints_compatible, region:us
Base models (finetune): id: Alibaba-NLP/gte-base-en-v1.5
Card metadata: base_model: Alibaba-NLP/gte-base-en-v1.5
library_name: sentence-transformers
metrics: cosine_accuracy@1, cosine_accuracy@3, cosine_accuracy@5, cosine_accuracy@10, cosine_precision@1, cosine_precision@3, cosine_precision@5, cosine_precision@10, cosine_recall@1, cosine_recall@3, cosine_recall@5, cosine_recall@10, cosine_ndcg@10, cosine_mrr@10, cosine_map@100
pipeline_tag: sentence-similarity
tags: sentence-transformers, sentence-similarity, feature-extraction, generated_from_trainer, dataset_size:1814, loss:MatryoshkaLoss, loss:MultipleNegativesRankingLoss
widget: source_sentence: 
Rodent diseases, as defined by the MONDO ontology, encompass a variety of illnesses affecting the order rodentia, including squirrels, gophers, pouched mice, beavers, rats, mice, porcupines, and guinea pigs. Recognized by the UMLS as diseases of the aforementioned rodent groups, these afflictions are pertinent to various rodent species. Notably, one relation is indicated: "parent-child" with "non-human animal disease, murine acquired immunodeficiency syndrome" as a child under the parent "rodent disease." This relationship suggests that diseases of rodents extend to encompass conditions like murine acquired immunodeficiency syndrome, highlighting the interconnectedness between rodent health issues and potentially affecting common rodent species.
sentences: I'd like to request information on medications that interact synergistically with Levetiracetam for concurrent treatment of a particular condition and also possess the ability to dampen neural excitation by reducing brain neuron activity., What are the observed effects or phenotypes associated with the subtype of gastritis induced by alcohol consumption?, What diseases are related to non-human animal illnesses and impact common rodent species?, source_sentence: 

The query is looking for genes associated with the term "lymphocytic" in their description on the Human Protein Atlas platform. The term "lymphocytic" refers to types of white blood cells, particularly lymphocytes, which play a significant role in the immune system. Here are the 195 genes identified:

- AEG1 (Alternative endonucleolytic endonuclease 1)
- AGR2 (Alpha-1 antitrypsin)
- ALDH2 (Aldehyde dehydrogenase 2)
- ANGPTL5 (Angiopoietin-like 5)
- APC2 (Apc homologous protein 2)
- ARID4A (AT-rich interactive domain-containing protein 4A)
- ARHGEF13 (Rho GDP-dissociation inhibitor family member 3)
- ASCL1 (ASCL homeobox 1)
- ATF2 (Activating transcription factor 2)
- ATP5G1 (ATP synthase, mitochondrial F1 subunit, gamma polypeptide 1)
- ATRX (AT-rich region X-specific protein)
- ATP6V1B1 (ATPase, type V, beta 1) 
- ATP6V0A2 (ATPase, type V, alpha 2)
- ATXN1 (Ataxin 1)
- AXIN2 (Axin 2)
- BAP1 (BRCA1 and arm Pelargonium sidifolium bromylactone 1)
- BCAS3 (BRCA1/CASC3)
- BCL2 (B-cell lymphoma 2)
- BCL2L1 (B-cell lymphoma 2 proto-oncogene, T-cell type)
- BLK (B lymphocyte kinase)
- BMP3 (Bone morphogenetic protein 3)
- BPGM (BPGM triose phosphate isomerase)
- CALD1 (Caldesmon 1)
- CAF1 (Complementation factor A, 1)
- CARS (Cystathionine gamma-lyase)
- CCND1 (Cyclin D1)

sentences: Which cell structures interact with genes or proteins that are affected by the compound [(2R)-1-[(2S)-2-[[(2S,3S)-1-Chloro-6-(diaminomethylideneamino)-2-hydroxyhexan-3-yl]carbamoyl]pyrrolidin-1-yl]-1-oxo-3-phenylpropan-2-yl]azanium?, Which anatomical structures lack expression of genes or proteins crucial for interaction with the development of glomerular parietal epithelial cells?, Which medication shares a gene or protein transporter with O-Trifluoromethylphenyl Anthranilic Acid and also acts as a protein-tyrosine kinase inhibitor?, source_sentence: 

The drug mentioned in the context provided is Ritobegron. Ritobegron is a beta-3 adrenergic receptor agonist primarily used in the treatment of overactive bladder (OAB) symptoms. It works by relaxing the bladder muscles and reducing unwanted contractions. The compound also has potential for treating benign prostatic hyperplasia (BPH) as well.

The side effects mentioned might be associated with Ritobegron, however, without the complete context, it's hard to specify which side effects are directly linked to this drug. The list of potential effects for a single drug might overlap with other drugs in the list, hence it is essential to cross-reference the side effects with a reliable medical source or database.

Ritobegron is also used for other purposes including as a vasodilator in animal models, and it may have potential applications in other medical conditions. However, the safety and effectiveness of these uses in humans have not been thoroughly established.

It is important to note that the medication should be prescribed and used only under the guidance of a healthcare provider, as it can have potential risks including but not limited to, disorders of vision, changes in body weight, and cardiac effects.
sentences: Can you find which genes and proteins interact with ethanolaminephosphotransferase's enzyme activity and are involved in creating glycosylphosphatidylinositol (GPI)?, Can you find me an antipsychotic similar to chlorpromazine that can cause oculogyric crisis and blocks both D1 and D2 dopamine receptors?, What genetic skin disease linked to the ATM gene also presents with neurodegeneration in the cerebellum and brainstem?, source_sentence: 
Brain stem glioma, identified by the MONDO term and definition, is a neuroglial tumor originating from the brain stem. This condition shares symptoms with both brain stem astrocytic neoplasm and brain stem ependymoma, including headaches, nausea, confusion, memory loss, changes in personality or irritability, difficulty with balance, urinary incontinence, vision problems, speech difficulties, seizures, and in more severe cases, loss of peripheral vision. The exact cause of gliomas is unknown, but factors such as age, exposure to radiation, and a family history of glioma can increase the risk. Gliomas are most common in adults aged 45 to 65 years, and certain types, such as ependymomas and pilocytic astrocytomas, are more prevalent in children and young adults. To address symptoms, immediate medical attention is advised, prompting individuals with any signs of glioma to seek professional evaluation promptly. The multifaceted nature of brain stem glioma underscores the importance of early diagnosis and intervention.
sentences: Can you find genes or proteins implicated in the digestive pathway that also potentially stimulate guanylate cyclase activity?, Could you identify a condition that manifests similarly to both brain stem astrocytic neoplasm and brain stem ependymoma?, What are potential illnesses associated with or resulting from echinostomiasis?, source_sentence: 
Vascular myelopathy, identified under the MONDO classification system, is a disease primarily associated with the spinal cord. This condition is notably marked by its effects extending beyond the spinal cord to impact the skin and internal organs. As a type of spinal cord disease, vascular myelopathy highlights the significant interconnectedness of neurological functions and their broader physiological repercussions, underscoring the need for comprehensive medical intervention and understanding of its multifaceted impacts.
sentences: Could you recommend a treatment for skin infections that requires minimal dosing, possibly an IV or oral medication that I can take just a few times a day? It's important for the medication to provide relief for several hours as I'm dealing with a persistent and uncomfortable skin problem., Which illness, characterized by harm or degeneration to the cornea— the transparent anterior part of the eye—precludes the use of medications prescribed for keratoacanthoma?, What could be a disease linked to the spinal cord that primarily affects the skin and internal organs?
model-index: name: SentenceTransformer based on Alibaba-NLP/gte-base-en-v1.5
results: task: type: information-retrieval
name: Information Retrieval
dataset: name: dim 768
type: dim_768
metrics: type: cosine_accuracy@1
value: 0.4900990099009901
name: Cosine Accuracy@1
verified: no, type: cosine_accuracy@3
value: 0.5792079207920792
name: Cosine Accuracy@3
verified: no, type: cosine_accuracy@5
value: 0.599009900990099
name: Cosine Accuracy@5
verified: no, type: cosine_accuracy@10
value: 0.6287128712871287
name: Cosine Accuracy@10
verified: no, type: cosine_precision@1
value: 0.4900990099009901
name: Cosine Precision@1
verified: no, type: cosine_precision@3
value: 0.19306930693069307
name: Cosine Precision@3
verified: no, type: cosine_precision@5
value: 0.11980198019801978
name: Cosine Precision@5
verified: no, type: cosine_precision@10
value: 0.06287128712871286
name: Cosine Precision@10
verified: no, type: cosine_recall@1
value: 0.4900990099009901
name: Cosine Recall@1
verified: no, type: cosine_recall@3
value: 0.5792079207920792
name: Cosine Recall@3
verified: no, type: cosine_recall@5
value: 0.599009900990099
name: Cosine Recall@5
verified: no, type: cosine_recall@10
value: 0.6287128712871287
name: Cosine Recall@10
verified: no, type: cosine_ndcg@10
value: 0.5606218586022012
name: Cosine Ndcg@10
verified: no, type: cosine_mrr@10
value: 0.5386393996542511
name: Cosine Mrr@10
verified: no, type: cosine_map@100
value: 0.5453292129431805
name: Cosine Map@100
verified: no
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Created: 2024-09-30 11:20:35