Model: Thyme233/bge_based_arg_minibio_matryoshka
Author: Thyme233
Pipeline: sentence-similarity
Library: sentence-transformers
Tags: sentence-transformers, safetensors, bert, sentence-similarity, feature-extraction, generated_from_trainer, dataset_size:4247, loss:MatryoshkaLoss, loss:MultipleNegativesRankingLoss, en, arxiv:1908.10084, arxiv:2205.13147, arxiv:1705.00652, base_model:BAAI/bge-base-en-v1.5, base_model:finetune:BAAI/bge-base-en-v1.5, license:apache-2.0, model-index, text-embeddings-inference, endpoints_compatible, region:us
Base models (finetune): id: BAAI/bge-base-en-v1.5
Card metadata: language: en
license: apache-2.0
tags: sentence-transformers, sentence-similarity, feature-extraction, generated_from_trainer, dataset_size:4247, loss:MatryoshkaLoss, loss:MultipleNegativesRankingLoss
base_model: BAAI/bge-base-en-v1.5
widget: source_sentence: What is the effect of the absence of Saccharomyces cerevisiae Rrm3p?
sentences: The Saccharomyces cerevisiae RRM3 gene encodes a 5' to 3' DNA helicase. While replication of most of the yeast genome was not dependent upon Rrm3p, in its absence, replication forks paused and often broke at an estimated 1400 discrete sites, including tRNA genes, centromeres, inactive replication origins, and transcriptional silencers. These replication defects were associated with activation of the intra-S phase checkpoint. Activation of the checkpoint was critical for viability of rrm3Delta cells, especially at low temperatures., MPE-seq (methidiumpropyl-EDTA sequencing) is a new method for the genome-wide characterization of chromatin that involves the digestion of nuclei with MPE-Fe(II) followed by massively parallel sequencing. Like micrococcal nuclease (MNase), MPE-Fe(II) preferentially cleaves the linker DNA between nucleosomes. However, there are differences in the cleavage of nuclear chromatin by MPE-Fe(II) relative to MNase. MPE-seq provides a unique and straightforward means for the genome-wide analysis of chromatin structure with minimal DNA sequence bias. In particular, the combined use of MPE-seq and MNase-seq enables the identification of noncanonical chromatin structures that are likely to be important for the regulation of gene expression., Yes,
Diffuse intrinsic pontine gliomas (DIPG) are the most aggressive brain tumors in children with 5-year survival rates of only 2%. About 85% of all DIPG are characterized by a lysine-to-methionine substitution in histone 3, which leads to global H3K27 hypomethylation accompanied by H3K27 hyperacetylation., source_sentence: What are the clinical trial outcomes of metformin use in polycystic ovary disease?
sentences: Metformin treatment vs placebo significantly but modestly improves ovulation frequency in women with abnormal ovarian function/oligomenorrhea and polycystic ovaries,  the lower BMI women were more likely to become pregnant.  While in naturally conceiving normal weight PCOS women pre-treatment with metformin tends to improve pregnancy rates, pre-treatment with metformin prior to conventional IVF/ICSI in women with PCOS does not improve stimulation or clinical outcome.
Metformin is an effective addition to Clomifene Citrate in term of reestablishment of ovulation and full-term pregnancies achievement.
Studies on the effect of metformin on serum Anti-Mullerian Hormone levels /AMH concentrations bring conflicting results, from Metformin having no effect on AMH  to Metformin treatment resulting in significant decrease of AMH levels, antral follicle numbers and ovarian volume. 
Metformin has been shown to cause significant weight loss (and leptin reduction) in PCOS., Mosdepth is a command-line tool for rapidly calculating genome-wide sequencing coverage. It measures depth from BAM or CRAM files at either each nucleotide position in a genome or for sets of genomic regions. Genomic regions may be specified as either a BED file to evaluate coverage across capture regions, or as a fixed-size window as required for copy-number calling. Mosdepth uses a simple algorithm that is computationally efficient and enables it to quickly produce coverage summaries., The myotubularin family of proteins are lipid inositol phosphatases, source_sentence: List the blood group antigens, associated with blood type
sentences: Filter Aided Sample Preparation (FASP), a type of proteomic reactor, in which samples dissolved in sodium dodecyl sulfate (SDS) are digested in an ultrafiltration unit., No. Overexpression of Uc.63+ increases the expression of AR and its downstream molecule PSA and promotes resistance to docetaxel through AR regulation. In patients treated with docetaxel, the expression of serum Uc.63+ in the docetaxel-resistant patients is higher than that in the docetaxel-sensitive patients (P = 0.011). Moreover, Kaplan-Meier analysis indicates that the high expression of serum Uc.63+ correlated with a worse prognosis (P = 0.020)., ABO antigens are highly abundant in many human cell types, including platelets, vascular endotheliums, and red blood cells., source_sentence: In which isochores are Alu elements enriched?
sentences: Yes, subdural empyema can be a complication of sinusitis, Alu elements are enriched in high GC% isochores due to reduced Alu loss by recombination in these regions. The frequency of Alu sequences increases with increasing GC, but attains a maximum in H2 isochores., Prostaglandins are involved in tissue regeneration after myocardial infarction and inhibitors of prostanoid production, such as aspirin and COX-2 inhibitors, have negative impact in this process. Furthermore, pharmacological interference with prostaglandin synthesis following myocardial infarction is associated with reduced fibrillar collagen formation., source_sentence: Which proteins are regulated by Nrf2?
sentences: A ciliopathy is any genetic disorder that affects the cellular cilia or the cilia anchoring structures, the basal bodies, or ciliary function, Keap1-Nrf2 system is known as a sensor of electrophilic compounds, and protects cells from oxidative stress through induction of various antioxidant enzymes., Muenke syndrome is an autosomal dominant disorder characterized by coronal suture craniosynostosis, hearing loss, developmental delay, carpal and tarsal fusions, and the presence of the Pro250Arg mutation in the FGFR3 gene.   Muenke syndrome is characterized by coronal craniosynostosis (bilateral more often than unilateral), hearing loss, developmental delay, and carpal and/or tarsal bone coalition. Tarsal coalition is a distinct feature of Muenke syndrome and has been reported since the initial description of the disorder in the 1990s.   
pipeline_tag: sentence-similarity
library_name: sentence-transformers
metrics: cosine_accuracy@1, cosine_accuracy@3, cosine_accuracy@5, cosine_accuracy@10, cosine_precision@1, cosine_precision@3, cosine_precision@5, cosine_precision@10, cosine_recall@1, cosine_recall@3, cosine_recall@5, cosine_recall@10, cosine_ndcg@10, cosine_mrr@10, cosine_map@100
model-index: name: bge_based_arg_minibio_matryoshka
results: task: type: information-retrieval
name: Information Retrieval
dataset: name: dim 768
type: dim_768
metrics: type: cosine_accuracy@1
value: 0.8559322033898306
name: Cosine Accuracy@1
verified: no, type: cosine_accuracy@3
value: 0.9385593220338984
name: Cosine Accuracy@3
verified: no, type: cosine_accuracy@5
value: 0.9533898305084746
name: Cosine Accuracy@5
verified: no, type: cosine_accuracy@10
value: 0.972457627118644
name: Cosine Accuracy@10
verified: no, type: cosine_precision@1
value: 0.8559322033898306
name: Cosine Precision@1
verified: no, type: cosine_precision@3
value: 0.31285310734463273
name: Cosine Precision@3
verified: no, type: cosine_precision@5
value: 0.19067796610169493
name: Cosine Precision@5
verified: no, type: cosine_precision@10
value: 0.09724576271186441
name: Cosine Precision@10
verified: no, type: cosine_recall@1
value: 0.8559322033898306
name: Cosine Recall@1
verified: no, type: cosine_recall@3
value: 0.9385593220338984
name: Cosine Recall@3
verified: no, type: cosine_recall@5
value: 0.9533898305084746
name: Cosine Recall@5
verified: no, type: cosine_recall@10
value: 0.972457627118644
name: Cosine Recall@10
verified: no, type: cosine_ndcg@10
value: 0.9175775315505871
name: Cosine Ndcg@10
verified: no, type: cosine_mrr@10
value: 0.8996334409469999
name: Cosine Mrr@10
verified: no, type: cosine_map@100
value: 0.9001760395975993
name: Cosine Map@100
verified: no, task: type: information-retrieval
name: Information Retrieval
dataset: name: dim 512
type: dim_512
metrics: type: cosine_accuracy@1
value: 0.8495762711864406
name: Cosine Accuracy@1
verified: no, type: cosine_accuracy@3
value: 0.934322033898305
name: Cosine Accuracy@3
verified: no, type: cosine_accuracy@5
value: 0.9533898305084746
name: Cosine Accuracy@5
verified: no, type: cosine_accuracy@10
value: 0.9745762711864406
name: Cosine Accuracy@10
verified: no, type: cosine_precision@1
value: 0.8495762711864406
name: Cosine Precision@1
verified: no, type: cosine_precision@3
value: 0.31144067796610164
name: Cosine Precision@3
verified: no, type: cosine_precision@5
value: 0.1906779661016949
name: Cosine Precision@5
verified: no, type: cosine_precision@10
value: 0.09745762711864407
name: Cosine Precision@10
verified: no, type: cosine_recall@1
value: 0.8495762711864406
name: Cosine Recall@1
verified: no, type: cosine_recall@3
value: 0.934322033898305
name: Cosine Recall@3
verified: no, type: cosine_recall@5
value: 0.9533898305084746
name: Cosine Recall@5
verified: no, type: cosine_recall@10
value: 0.9745762711864406
name: Cosine Recall@10
verified: no, type: cosine_ndcg@10
value: 0.9159735691496526
name: Cosine Ndcg@10
verified: no, type: cosine_mrr@10
value: 0.8968918146354585
name: Cosine Mrr@10
verified: no, type: cosine_map@100
value: 0.8973466678587073
name: Cosine Map@100
verified: no, task: type: information-retrieval
name: Information Retrieval
dataset: name: dim 256
type: dim_256
metrics: type: cosine_accuracy@1
value: 0.8432203389830508
name: Cosine Accuracy@1
verified: no, type: cosine_accuracy@3
value: 0.9300847457627118
name: Cosine Accuracy@3
verified: no, type: cosine_accuracy@5
value: 0.951271186440678
name: Cosine Accuracy@5
verified: no, type: cosine_accuracy@10
value: 0.9661016949152542
name: Cosine Accuracy@10
verified: no, type: cosine_precision@1
value: 0.8432203389830508
name: Cosine Precision@1
verified: no, type: cosine_precision@3
value: 0.31002824858757055
name: Cosine Precision@3
verified: no, type: cosine_precision@5
value: 0.19025423728813562
name: Cosine Precision@5
verified: no, type: cosine_precision@10
value: 0.09661016949152544
name: Cosine Precision@10
verified: no, type: cosine_recall@1
value: 0.8432203389830508
name: Cosine Recall@1
verified: no, type: cosine_recall@3
value: 0.9300847457627118
name: Cosine Recall@3
verified: no, type: cosine_recall@5
value: 0.951271186440678
name: Cosine Recall@5
verified: no, type: cosine_recall@10
value: 0.9661016949152542
name: Cosine Recall@10
verified: no, type: cosine_ndcg@10
value: 0.9095971879335102
name: Cosine Ndcg@10
verified: no, type: cosine_mrr@10
value: 0.8910327549098734
name: Cosine Mrr@10
verified: no, type: cosine_map@100
value: 0.8918430577940674
name: Cosine Map@100
verified: no, task: type: information-retrieval
name: Information Retrieval
dataset: name: dim 128
type: dim_128
metrics: type: cosine_accuracy@1
value: 0.826271186440678
name: Cosine Accuracy@1
verified: no, type: cosine_accuracy@3
value: 0.913135593220339
name: Cosine Accuracy@3
verified: no, type: cosine_accuracy@5
value: 0.9385593220338984
name: Cosine Accuracy@5
verified: no, type: cosine_accuracy@10
value: 0.9555084745762712
name: Cosine Accuracy@10
verified: no, type: cosine_precision@1
value: 0.826271186440678
name: Cosine Precision@1
verified: no, type: cosine_precision@3
value: 0.3043785310734463
name: Cosine Precision@3
verified: no, type: cosine_precision@5
value: 0.18771186440677967
name: Cosine Precision@5
verified: no, type: cosine_precision@10
value: 0.09555084745762712
name: Cosine Precision@10
verified: no, type: cosine_recall@1
value: 0.826271186440678
name: Cosine Recall@1
verified: no, type: cosine_recall@3
value: 0.913135593220339
name: Cosine Recall@3
verified: no, type: cosine_recall@5
value: 0.9385593220338984
name: Cosine Recall@5
verified: no, type: cosine_recall@10
value: 0.9555084745762712
name: Cosine Recall@10
verified: no, type: cosine_ndcg@10
value: 0.8962001591462352
name: Cosine Ndcg@10
verified: no, type: cosine_mrr@10
value: 0.8767268630616086
name: Cosine Mrr@10
verified: no, type: cosine_map@100
value: 0.8779707932197566
name: Cosine Map@100
verified: no, task: type: information-retrieval
name: Information Retrieval
dataset: name: dim 64
type: dim_64
metrics: type: cosine_accuracy@1
value: 0.788135593220339
name: Cosine Accuracy@1
verified: no, type: cosine_accuracy@3
value: 0.8919491525423728
name: Cosine Accuracy@3
verified: no, type: cosine_accuracy@5
value: 0.9110169491525424
name: Cosine Accuracy@5
verified: no, type: cosine_accuracy@10
value: 0.9300847457627118
name: Cosine Accuracy@10
verified: no, type: cosine_precision@1
value: 0.788135593220339
name: Cosine Precision@1
verified: no, type: cosine_precision@3
value: 0.2973163841807909
name: Cosine Precision@3
verified: no, type: cosine_precision@5
value: 0.18220338983050846
name: Cosine Precision@5
verified: no, type: cosine_precision@10
value: 0.0930084745762712
name: Cosine Precision@10
verified: no, type: cosine_recall@1
value: 0.788135593220339
name: Cosine Recall@1
verified: no, type: cosine_recall@3
value: 0.8919491525423728
name: Cosine Recall@3
verified: no, type: cosine_recall@5
value: 0.9110169491525424
name: Cosine Recall@5
verified: no, type: cosine_recall@10
value: 0.9300847457627118
name: Cosine Recall@10
verified: no, type: cosine_ndcg@10
value: 0.86422428009177
name: Cosine Ndcg@10
verified: no, type: cosine_mrr@10
value: 0.8425780199085281
name: Cosine Mrr@10
verified: no, type: cosine_map@100
value: 0.844512693618036
name: Cosine Map@100
verified: no
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Created: 2024-11-29 04:01:46