BenchX: A Unified Benchmark Framework for Medical Vision-Language
  Pretraining on Chest X-Rays
Authors: name: Yang Zhou; name: Tan Li Hui Faith; name: Yanyu Xu; name: Sicong Leng; name: Xinxing Xu; name: Yong Liu; name: Rick Siow Mong Goh
Published: 2024-10-29 11:53:18

Abstract: Medical Vision-Language Pretraining (MedVLP) shows promise in learning
generalizable and transferable visual representations from paired and unpaired
medical images and reports. MedVLP can provide useful features to downstream
tasks and facilitate adapting task-specific models to new setups using fewer
examples. However, existing MedVLP methods often differ in terms of datasets,
preprocessing, and finetuning implementations. This pose great challenges in
evaluating how well a MedVLP method generalizes to various clinically-relevant
tasks due to the lack of unified, standardized, and comprehensive benchmark. To
fill this gap, we propose BenchX, a unified benchmark framework that enables
head-to-head comparison and systematical analysis between MedVLP methods using
public chest X-ray datasets. Specifically, BenchX is composed of three
components: 1) Comprehensive datasets covering nine datasets and four medical
tasks; 2) Benchmark suites to standardize data preprocessing, train-test
splits, and parameter selection; 3) Unified finetuning protocols that
accommodate heterogeneous MedVLP methods for consistent task adaptation in
classification, segmentation, and report generation, respectively. Utilizing
BenchX, we establish baselines for nine state-of-the-art MedVLP methods and
found that the performance of some early MedVLP methods can be enhanced to
surpass more recent ones, prompting a revisiting of the developments and
conclusions from prior works in MedVLP. Our code are available at
https://github.com/yangzhou12/BenchX.