Hengzongshu/ArticleAgent huggingface dataset:
previous determinations

using D^{0}→K^{-}π^{+} and D^{+}→K^{-}π^{+}π^{+} decays reconstructed in e^{+}e^{-}→cc[over ¯] data recorded by the Belle II experiment at the SuperKEKB asymmetric-energy e^{+}e^{-} collider. The data, collected at center-of-mass energies at or near the ϒ(4S) resonance, correspond to an integrated luminosity of 72 fb^{-1}

The results, τ(D^{0})=410.5±1.1(stat)±0.8(syst) fs and τ(D^{+})=1030.4±4.7(stat)±3.1(syst) fs, are the most precise to date and are consistent with previous determinations
The large size and complexity of the garden pea (Pisum sativum L.) genome hamper its sequencing and the discovery of pea gene resources. Although transcriptome sequencing provides extensive information about expressed genes, some tissue-specific transcripts can only be identified from particular organs under appropriate conditions.

In this study, we performed RNA sequencing of polyadenylated transcripts from young pea nodules and root tips on an Illumina GAIIx system, followed by de novo transcriptome assembly using the Trinity program. We obtained more than 58,000 and 37,000 contigs from "Nodules" and "Root Tips" assemblies, respectively. The quality of the assemblies was assessed by comparison with pea expressed sequence tags and transcriptome sequencing project data available from NCBI website. The "Nodules" assembly was compared with the "Root Tips" assembly and with pea transcriptome sequencing data from projects indicating tissue specificity.

As a result, approximately 13,000 nodule-specific contigs were found and annotated by alignment to known plant protein-coding sequences and by Gene Ontology searching. Of these, 581 sequences were found to possess full CDSs and could thus be considered as novel nodule-specific transcripts of pea. The information about pea nodule-specific gene sequences can be applied for gene-based markers creation, polymorphism studies, and real-time PCR.
It has been discussed the notion of an organized molecular assemblies as the key problem of the low-dimension systems physics and the supramolecular chemistry.

An organized molecular assembly is a group of atoms or molecules built in a solid matrix due to chemical or intermolecular interactions and possessing, in total, the ability to produce a definite response to the given perturbation.

The effectiveness of this approach has been shown on examples the search for systems that evolve to the formation of two dimensional organized molecular assemblies at the boundary between a semiconductor crystal and a dielectric and also creating quantum dots and chemical sensors.
Particle loss due to the emission of single energetic beamstrahlung photons in beam collisions is shown to impose a fundamental limit on storage-ring luminosities at energies greater than 2E 0 ∼ 140 GeV for head-on collisions and 2E 0 ∼ 40 GeV for crab-waist collisions.Above these threshold energies, the suppression factor due to beamstrahlung scales as 1/E 4/3 0 , and for a fixed power of synchrotron radiation, the luminosity L ∝ R/E 13/3 0 , where R is the collider radius.For 2E 0 150 GeV, both collision schemes have similar luminosity limits.The luminosities attainable at storage-ring and linear-collider (LC) 2E 0 ∼ 240 GeV Higgs factories are comparable; at higher energies, LCs are preferable.This conference paper is based on my recent PRL publication [1] supplemented with additional comments on linac-ring e + e -colliders and ring e + e -colliders with charge compensation (four-beam collisions).
The mineralogy (SEM), geochemistry (LA-ICP-MS) and isotopic composition of C, O and Sr in carbonates from uniquely high-grade REE-Nb ores of the Tomtor massif is presented.

Testing of the formation conditions for uniquely high-grade ores from the Tomtor deposit was conducted.
The 9p21.3 chromosomal region is a marker of the risk of cardiovascular diseases. The aim of this study was to analyze single-nucleotide polymorphism rs1333049 (chr9:22125504) in the population of Western Siberia (Russia) and possible associations with clinical and biochemical parameters. The population included in the analyses was selected from a sample surveyed within the framework of the Health, Alcohol and Psychosocial Factors In Eastern Europe (HAPIEE) study (9360 participants, >90% white, aged 45–69, males: 50%). In total, 2729 randomly selected patients were included. Plasma lipid levels were determined by standard enzymatic assays. Rs1333049 was analyzed by RT-PCR (BioLabMix, Russia). Frequencies of rs1333049 genotypes C/C (homozygote), C/G (heterozygote), and G/G were 0.22, 0.51, and 0.27 in this population. The Allele G frequency was 0.53. We found an association of allele G with total cholesterol and low-density lipoprotein cholesterol levels among male participants (p = 0.004 and p = 0.002, respectively). Allele C was significantly associated with the risk of myocardial infarction among the male participants (odds ratio 1.96, 95% confidence interval 1.14–3.38, p = 0.017) and the study population (odds ratio 1.83, 95% confidence interval 1.23–2.72, p = 0.004). Thus, rs1333049 is associated with myocardial infarction in the white population of Western Siberia (Russia).
Species of the mustelid subfamily Guloninae inhabit diverse habitats on multiple continents, and occupy a variety of ecological niches. They differ in feeding ecologies, reproductive strategies and morphological adaptations.

To identify candidate loci associated with adaptations to their respective environments, we generated a de novo assembly of the tayra (Eira barbara), the earliest diverging species in the subfamily, and compared this with the genomes available for the wolverine (Gulo gulo) and the sable (Martes zibellina). Our comparative genomic analyses included searching for signs of positive selection, examining changes in gene family sizes and searching for species-specific structural variants.

Among candidate loci associated with phenotypic traits, we observed many related to diet, body condition and reproduction. For example, for the tayra, which has an atypical gulonine reproductive strategy of aseasonal breeding, we observed species-specific changes in many pregnancy-related genes. For the wolverine, a circumpolar hypercarnivore that must cope with seasonal food scarcity, we observed many changes in genes associated with diet and body condition. All types of genomic variation examined (single nucleotide polymorphisms, gene family expansions, structural variants) contributed substantially to the identification of candidate loci. This argues strongly for consideration of variation other than single nucleotide polymorphisms in comparative genomics studies aiming to identify loci of adaptive significance.
The generalized hyper-Ramsey resonance formula originally published in Phys. Rev. A vol 92, 023416 (2015) is derived using a Cayley-Klein spinor parametrization.

The shape of the interferometric resonance and the associated composite phase-shift are reformulated including all individual laser pulse parameters. An exact and simple analytical expression describing a Ramsey's method of separated composite oscillating laser fields with quantum state control allows us to accurately simulate all recent clock interrogation protocols under various pulse defects.

Potential robustness of signal contrast and phase-shift of the wave-function fringe pattern can now be arbitrarily explored tracking any shape distortion due to systematic effects from the probe laser.
The work presents the results of development of panoramic interferential technique to register pressure fields. The technique is based upon the usage of elastic layer as a pressure sensor. When utilize the sensors with aerodynamic models an issue of influence of model-sensor joint on measurements appears. Numerical simulations showed a transfer function of the sensor is not affected by the vicinity of the joint to the point of load application. Nevertheless experimental results demonstrate redistribution of layer transfer function amplitude from low frequency range to high one, 5% relative value change is observed.
The article presents a clinical case of a 63-year-old patient with anemia with chronic atrophic gastritis and treatment failure with iron preparations. Using the example of this observation, the errors that occur during the diagnosis and management of patients with autoimmune (corpus atrophic) gastritis (AIG) are analyzed.

At the same time, the pathogenesis of AIG and the relationship with Helicobacter pylori ( H. pyloi ) infection are being discussed.

The problem of timely diagnosis of AIG and the benefits of non-invasive methods for assessing the functional state of the stomach are becoming relevant.
This study is based on a data sample corresponding to an integrated luminosity of $711\text{ }\text{ }{\mathrm{fb}}^{\ensuremath{-}1}$, collected at the $\mathrm{\ensuremath{\Upsilon}}(4S)$ resonance with the Belle detector at the KEKB asymmetric-energy ${e}^{+}{e}^{\ensuremath{-}}$ collider.

We investigate the $J/\ensuremath{\psi}{\ensuremath{\pi}}^{+}{\ensuremath{\pi}}^{\ensuremath{-}}$ invariant mass distribution in the range 4.0 to $4.6\text{ }\text{ }\mathrm{GeV}/{c}^{2}$ using both ${B}^{+}\ensuremath{\rightarrow}J/\ensuremath{\psi}{\ensuremath{\pi}}^{+}{\ensuremath{\pi}}^{\ensuremath{-}}{K}^{+}$ and ${B}^{0}\ensuremath{\rightarrow}J/\ensuremath{\psi}{\ensuremath{\pi}}^{+}{\ensuremath{\pi}}^{\ensuremath{-}}{K}_{S}^{0}$ decays.

We find excesses of events above the background levels, with significances of 2.1 and 0.9 standard deviations for charged and neutral $B\ensuremath{\rightarrow}Y(4260)K$ decays, respectively, taking into account the systematic uncertainties. These correspond to upper limits on the product of branching fractions, $\mathcal{B}({B}^{+}\ensuremath{\rightarrow}Y(4260){K}^{+})\ifmmode\times\else\texttimes\fi{}\mathcal{B}(Y(4260)\ensuremath{\rightarrow}J/\ensuremath{\psi}{\ensuremath{\pi}}^{+}{\ensuremath{\pi}}^{\ensuremath{-}})<1.4\ifmmode\times\else\texttimes\fi{}{10}^{\ensuremath{-}5}$ and $\mathcal{B}({B}^{0}\ensuremath{\rightarrow}Y(4260){K}^{0})\ifmmode\times\else\texttimes\fi{}\mathcal{B}(Y(4260)\ensuremath{\rightarrow}J/\ensuremath{\psi}{\ensuremath{\pi}}^{+}{\ensuremath{\pi}}^{\ensuremath{-}})<1.7\ifmmode\times\else\texttimes\fi{}{10}^{\ensuremath{-}5}$ at the 90% confidence level.
The method of producing of nano-dimensional silicon carbide and experimental results of pyrolysis of a mixture of a silicon-hydrocarbon composition by compressing in a cyclic chemical reactor has been proposed.

New structural design solutions and ceramic coatings obtained by applying the technology of microarc oxidation were used in the compression unit of the chemical compression reactor. This allowed us to forego the traditional schemes, to achieve a high compression ratio, and to obtain the pressure and temperature required in the reaction zone for silicon-hydrocarbon composition pyrolysis.

The flow-through pyrolysis method in chemical compression reactor is convenient, technological and efficient to be used in the production of high purity silicon carbide nanopowders.
Expression of the CNDP2 gene is frequently up- or down-regulated in different types of human cancers. However, how the product of this gene is involved in cell growth and proliferation is poorly understood. Moreover, our knowledge of the functions of the CNDP2 orthologs in well-established model organisms is scarce. In particular, the function of the D. melanogaster ortholog of CNDP2, encoded by the CG17337 gene (hereafter referred to as dCNDP2), is still unknown.

This study was aimed at developing a set of genetic and molecular tools to study the roles of dCNDP2. We generated a dCNDP2 null mutation (hereafter ∆dCNDP2) using CRISPR/Cas9-mediated homologous recombination (HR) and found that the ∆dCNDP2 mutants are homozygous viable, morphologically normal and fertile. We also generated transgenic fly lines expressing eGFP-tagged and non-tagged dCNDP2 protein, all under the control of the UAS promoter, as well as polyclonal antibodies specific to dCNDP2.

Using these tools, we demonstrate that only one of the two predicted dCNDP2 isoforms is expressed throughout the different tissues tested. dCNDP2 was detected in both the cytoplasm and the nucleus, and was found to be associated with multiple sites in the salivary gland polytene chromosomes. The dCNDP2 gene is not essential for fly viability under standard laboratory conditions. The subcellular localization pattern of dCNDP2 suggests that this protein might have roles in both the cytoplasm and the nucleus. The genetic and molecular tools developed in this study will allow further functional characterization of the conserved CNDP2 protein using D. melanogaster as a model system.
According to the data about its analogues, the petroglyph White Horse in the Minusinsk basin has been dated as the late Paleolithic. Such dating of the petroglyph provides ground for research and drawing stylistic links with a series of similar Paleolithic images of Western Europe.

We used microscopical analysis of the surface with the pattern to carry out a number of special experiments. The aim of our research was to verify whether the image could have been created using the supposed 'applicative' technology. The results of our studies and the dating of calcite stains on the rocky planes obtained by means of accelerator mass spectrometry lead us to revise the time estimates of the image. Experimental-technological and special traceological studies together with photogrammetry of the petroglyph provide the basis for determining three stages of the pattern formation. Some of the fragments of the image are likely to have been performed by different people at different times. A stylistic analysis of similar and geographically close objects allows us to date the picture no earlier than the Late Holocene. The image safety is under a serious threat due to the rapid destruction of the rock surface.

Based on the data obtained as a result of our experiments, the petroglyph cannot be defined as 'an image of the Upper Paleolithic era'. After a series of analyses including chemical analysis of calcite and experimental traceological analysis, we conclude that relative dating of the image refers to a period not earlier than the Bronze Age. A stylistic analysis suggests that the petroglyph White Horse in the Minusinsk basin, to a certain extent, naturally fits into the general visual tradition of the region. The 3-D model of the image allows us to keep a clear visual image of the object. However, the image can be damaged as a result of natural processes as the rock surface is in a state of decay.
Within a framework of mechanics of multiphase media a mathematical model of the dynamics of a helium and water vapor mixture flowing through a bed of composite adsorbent, based on microspheres and aluminum oxide, is derived. It is shown how to coincide the flow in porous media of adsorber and gas diffusion in a cylindrical granule of adsorbent taking into account helium adsorption by microspheres and water vapor by a porous surface of an adsorbent.
to study blood pressure levels and the prevalence of hypertension in persons aged 25-45 years in Novosibirsk.A cross-sectional population study in one of typical areas of Novosibirsk was performed in 2013-2016. The study included 479 men and 612 women aged 25-45 years. Arterial hypertension was defined as blood pressure (BP) ≥140 / 90 mmHg according to Russian recommendations (2004). For analysis two age groups were distinguished: 25-34 years and 35-45 years.Mean values of systolic and diastolic BP were significantly lower in women than in men in age groups. In men and women, the analyzed indicators were significantly higher in the older than in the younger age group. Mean values of pulse pressure in men were significantly higher than in women in both age groups, there were no differences in the analyzed index between age groups in either men or women. Optimal BP was more often recorded among women than among men in both age groups. The proportion of persons with normal BP among men was grate than among women in both age groups. In the age group 35-45 years compared with the younger group, in men there was a decrease in incidence of category with BP<140 / 90 mmHg, an increase of the proportion of persons with hypertension grades 1 and 2, the appearance of persons with grade 3 hypertension; in women - an increase of the proportion of individuals with normal, high-normal BP, and with grade 1 hypertension, appearance of individuals with grades 2 and 3 hypertension. Frequency of BP categories ≥140 / 90 mmHg in age group 25-34 years among men was 17.6 %, among women 3.1 % (p<0.0001); in age group 35-45 years among men - 34.7 %, among women - 12.5 % (p<0.0001).Prevalence of hypertension in men was 28 %, in women - 9 %. Favorable tendencies of BP indicators in both sexes were revealed over a 30-year period, while gender differences did not change.
Purpose. The article presents results of studying the elemental composition and manufacturing technology of turquoise jewelry found in barrow 1 of the Ak-Dag I burial ground of the early Scythian time. Scanning electron microscopy and energy dispersive X-ray spectroscopy were used to determine the elemental composition of the mineral. The presence and ratio of the number of elements in the table indicates that the items are made of turquoise. The basic elements of the mineral include oxides of copper, phosphorus, aluminum and iron. A relatively large amount of iron oxide gives turquoise minerals a more saturated green color. The composition of the samples under study is extremely rich in zirconium, which allows us to identify the field where the raw material was obtained. Results. A traceological study of the artifacts considered was based on the proven methodology of experimental-traceological analysis. As a result of experimental and technological research, we conclude that the process of manufacturing occurred in three stages. Initially, the formation of the main planes of the workpieces and grinding of the ends took place. At the second stage the artifacts were drilled, the starting points of drilling were located at the narrow ends of the items. The traces of work that are visible on the artifacts indicate the use of easel, high-speed drilling. At the third stage the artifacts were processed with a fine-grained abrasive, as a result of which the final products were given a smoothed shape. Conclusion. In general, the production technology of the artifacts considered can be described as relatively perfect. There were closest analogues of the products from the Ak-Dag I site found in the same region. A similar method of inclined drilling was also used by the Scythians of Altai on their stone products.
Generally, conditions for deep sub-Doppler laser cooling do not match conditions for strong atomic localization, that takes place in a deeper optical potential and leads to higher temperature. Moreover, for a given detuning in a deep optical potential the secular approximation, which is frequently used for a quantum description of laser cooling, fails.

Here we investigate the atomic localization in optical potential, using a full quantum approach for atomic density matrix beyond the secular approximation.

It is shown that laser cooling in a deep optical potential, created by a light field with polarization gradients, can be used as an alternative method for the formation of high contrast spatially localized structures of atoms for the purposes of atom lithography and atomic nanofabrication. Finally, we analyze possible limits for the width and contrast of localized atomic structures that can be reached in this type of light mask.
This result is in drastic contrast to what is usually assumed in the literature for a theoretical description of experimental data and for device modeling, where $N^{-1/3}$ is considered as the decisive length scale for $\mu(F)$.

Using analytical arguments and computer simulations we show that the dependence of the hopping carrier mobility on the electric field $\mu(F)/\mu(0)$ in a system of random sites is determined by the localization length $a$, and not by the concentration of sites $N$.

We show that although the limiting value $\mu(F \rightarrow 0)$ is determined by the ratio $N^{-1/3}/a$, the dependence $\mu(F)/\mu(0)$ is sensitive to the magnitude of $a$, and not to $N^{-1/3}$. Furthermore, our numerical and analytical results prove that the effective temperature responsible for the combined effect of the electric field $F$ and the real temperature $T$ on the hopping transport via spatially random sites can contain the electric field only in the combination $eFa$.
An experimental study of the temperature field on the surface of horizontal liquid layer (Ethanol) evaporating into gas flow (Air) has been performed.

Temperature gradient of the gas-liquid interface has been measured with the help of Titanium 570M IR camera.

Shear stresses on gas-liquid interface induced by thermocapillary effect and inert gas flow have been defined.
Copper perchlorophthalocyanine (CuPcCl 16 , CuC 32 N 8 Cl 16 , Pigment Green 7) is one of the commercially most important green pigments. The compound is a nanocrystalline fully insoluble powder. Its crystal structure was first addressed by electron diffraction in 1972 [Uyeda et al. (1972). J. Appl. Phys. 43 , 5181–5189]. Despite the commercial importance of the compound, the crystal structure remained undetermined until now. Using a special vacuum sublimation technique, micron-sized crystals could be obtained. Three-dimensional electron diffraction (3D ED) data were collected in two ways: (i) in static geometry using a combined stage-tilt/beam-tilt collection scheme and (ii) in continuous rotation mode. Both types of data allowed the crystal structure to be solved by direct methods. The structure was refined kinematically with anisotropic displacement parameters for all atoms. Due to the pronounced crystal mosaicity, a dynamic refinement was not feasible. The unit-cell parameters were verified by Rietveld refinement from powder X-ray diffraction data. The crystal structure was validated by many-body dispersion density functional theory (DFT) calculations. CuPcCl 16 crystallizes in the space group C 2/ m ( Z = 2), with the molecules arranged in layers. The structure agrees with that proposed in 1972.
Sequence variants in gene regulatory regions alter gene expression and contribute to phenotypes of individual cells and the whole organism, including disease susceptibility and progression. Single-nucleotide variants in enhancers or promoters may affect gene transcription by altering transcription factor binding sites. Differential transcription factor binding in heterozygous genomic loci provides a natural source of information on such regulatory variants.

We present a novel approach to call the allele-specific transcription factor binding events at single-nucleotide variants in ChIP-Seq data, taking into account the joint contribution of aneuploidy and local copy number variation, that is estimated directly from variant calls. We have conducted a meta-analysis of more than 7 thousand ChIP-Seq experiments and assembled the database of allele-specific binding events listing more than half a million entries at nearly 270 thousand single-nucleotide polymorphisms for several hundred human transcription factors and cell types.

These polymorphisms are enriched for associations with phenotypes of medical relevance and often overlap eQTLs, making candidates for causality by linking variants with molecular mechanisms. Specifically, there is a special class of switching sites, where different transcription factors preferably bind alternative alleles, thus revealing allele-specific rewiring of molecular circuitry.