Hengzongshu/ArticleAgent huggingface dataset:
Methionine γ-lyase (MGL) catalyzes the γ-elimination of l-methionine and its derivatives as well as the β-elimination of l-cysteine and its analogs. These reactions yield α-keto acids and thiols. The mechanism of chemical conversion of amino acids includes numerous reaction intermediates.

The detailed analysis of MGL interaction with glycine, l-alanine, l-norvaline, and l-cycloserine was performed by pre-steady-state stopped-flow kinetics. The structure of side chains of the amino acids is important both for their binding with enzyme and for the stability of the external aldimine and ketimine intermediates. X-ray structure of the MGL·l-cycloserine complex has been solved at 1.6 Å resolution.

The structure models the ketimine intermediate of physiological reaction. The results elucidate the mechanisms of the intermediate interconversion at the stages of external aldimine and ketimine formation.
The formation of neutral I2 by the photodissociation of the methyl iodide dimer, (CH3I)2, excited within the A band at 249.5nm is evaluated using velocity map imaging. In previous work [J. Chem. Phys. 122, 204301 (2005)], we showed that the formation of I2+ from photodissociation of the methyl iodide dimer takes place via ionic channels (through the formation of (CH3I)2+). It is thus not possible to detect neutral I2 by monitoring I2+. Neutral I2 is detected in this study by monitoring I atoms arising from the photodissociation of I2. Iodine atoms from I2 photodissociation have a characteristic kinetic energy and angular anisotropy, which is registered using velocity map imaging. We use a two-color probe scheme involving the photodissociation of nascent I2 at 499nm, which gives rise to I atoms that are ionized by (2+1) resonance enhanced multiphoton ionization at 304.67nm. Our estimate of the yield of nascent I2 is based on the comparison with the signal from I2 at a known concentration. Using molecular beams with a small fraction of CH3I (1% in the expanded mixture) where smaller clusters should prevail, the production of I2 was found to be negligible. An upper estimate for the quantum yield of I2 from (CH3I)2 dimers was found to be less than 0.4%. Experiments with a higher fraction of CH3I (4% in the expanded mixture), which favor the formation of larger clusters, revealed an observable formation of I2, with an estimated translational temperature of about 820K. We suggest that this observed I2 signal arises from the photodissociation of several CH3I molecules in the larger cluster by the same UV pulse, followed by recombination of two nascent iodine atoms is responsible for neutral I2 production.
Base Excision Repair (BER) efficiently corrects the most common types of DNA damage in mammalian cells. Step-by-step coordination of BER is facilitated by multiple interactions between enzymes and accessory proteins involved.

Here we characterize quantitatively a number of complexes formed by DNA polymerase β (Polβ), apurinic/apyrimidinic endonuclease 1 (APE1), poly(ADP-ribose) polymerase 1 (PARP1), X-ray repair cross-complementing protein 1 (XRCC1) and tyrosyl-DNA phosphodiesterase 1 (TDP1), using fluorescence- and light scattering-based techniques. Direct physical interactions between the APE1-Polβ, APE1-TDP1, APE1-PARP1 and Polβ-TDP1 pairs have been detected and characterized for the first time.

The combined results provide strong evidence that the most stable complex is formed between XRCC1 and Polβ. Model DNA intermediates of BER are shown to induce significant rearrangement of the Polβ complexes with XRCC1 and PARP1, while having no detectable influence on the protein–protein binding affinities. The strength of APE1 interaction with Polβ, XRCC1 and PARP1 is revealed to be modulated by BER intermediates to different extents, depending on the type of DNA damage. The affinity of APE1 for Polβ is higher in the complex with abasic site-containing DNA than after the APE1-catalyzed incision. Our findings advance understanding of the molecular mechanisms underlying coordination and regulation of the BER process.
Subvolcanic environments in supra‐subduction zones are renowned for hosting epithermal deposits that often contain electrum and native gold, including bonanza examples. This study examined mineral assemblages and processes occurring in shallow‐crust volcanic settings using recent eruption (2012–2013) of the basaltic Tolbachik volcano in the Kamchatka arc. The Tolbachik eruptive system is characterized by an extensive system of lava tubes. After cessation of magma input, the tubes maintained the flow of hot oxidized gases that episodically interacted with the lava surfaces and sulphate‐chloride precipitates from volcanic gases on these surfaces. The gas‐rock interaction had strong pyrometamorphic effects that resulted in the formation of molten salt, oxidized (tenorite, hematite, Cu‐rich magnesioferrite) and skarn‐like silicate mineral assemblages. By analogy with experimental studies, we propose that a combination of these processes was responsible for extraction of metals from the basaltic wall rocks and deposition of Cu‐, Fe‐ and Cu‐Fe‐oxides and native gold.
The publication presents a brief review of the new book by A. A. Maslov. Through the investigation of the struggle against COVID-19 in China, the author provides a comprehensive picture of the social-economic situation in the country, analyzes the reasons for the victory over the pandemic by Chinese society and its political structures, as well as modern alternatives for globalization. The book specially introduces the situation in Hong Kong as it represents the deepest social-political challenge in the history of the PRC. Highly commended by the reviewers, the mew monograph by Professor Maslov will be of great interest not only for specialists, but for a broad range of readers too.
The plant hormone ethylene regulates numerous developmental processes and stress responses. Ethylene signaling proceeds via a linear pathway, which activates transcription factor (TF) EIN3, a primary transcriptional regulator of ethylene response. EIN3 influences gene expression upon binding to a specific sequence in gene promoters. This interaction, however, might be considerably affected by additional co-factors.

In this work, we perform whole genome bioinformatics study to identify the impact of epigenetic factors in EIN3 functioning. The analysis of publicly available ChIP-Seq data on EIN3 binding in Arabidopsis thaliana showed bimodality of distribution of EIN3 binding regions (EBRs) in gene promoters. Besides a sharp peak in close proximity to transcription start site, which is a common binding region for a wide variety of TFs, we found an additional extended peak in the distal promoter region. We characterized all EBRs with respect to the epigenetic status appealing to previously published genome-wide map of nine chromatin states in A. thaliana.

We found that the implicit distal peak was associated with a specific chromatin state (referred to as chromatin state 4 in the primary source), which was just poorly represented in the pronounced proximal peak. Intriguingly, EBRs corresponding to this chromatin state 4 were significantly associated with ethylene response, unlike the others representing the overwhelming majority of EBRs related to the explicit proximal peak. Moreover, we found that specific EIN3 binding sequences predicted with previously described model were enriched in the EBRs mapped to the chromatin state 4, but not to the rest ones. These results allow us to conclude that the interplay of genetic and epigenetic factors might cause the distinct modes of EIN3 regulation.
There is growing interest in cereals with anthocyanins in grain as a source of natural biologically active compounds beneficial for human health. In bread wheat, anthocyanins accumulate in the pericarp, under control of Pp genes, and in the aleurone layer, under control of Ba. Breeding anthocyanin-rich wheat cultivars is possible through the transfer of genes from genetic stocks to the desired cultivars. A blue-grained substitution line, s:S294Th(4D) (BC7 progeny), of the bread wheat cultivar Saratovskaya 29 (S29) carrying the Thinopyrum ponticum (Podp.) chromosome 4Th was developed. The 4Th/4D substitution was confirmed with chromosome C-banding and multicolor FISH, as well as by microsatellite analysis. Total anthocyanin content in the bran fraction of the new blue-grained line was 475.7 μg/g compared to 355.6 μg/g of the control purple-grained near-isogenic line, i:S29Pp-A1Pp-D1Pp3P, and a total absence in S29. Although the developed line carries entire chromosome substitution, its 1000 grains weight, milling parameters, and dough physical properties did not differ or decreased slightly comparison to S29. These results support that the developed substitution line can be of interest in breeding programs to increase the anthocyanin production in commercial varieties.
Owing to its geographic position Eastern Kazakhstan has long been a cultural crossroads region. During the Scytho-Siberian Age, it was a place where cultures of southern Siberia, Sayan-Altai, Northern and Central Kazakhstan, Zhetysu, etc., interacted, as evidenced by the “Scythian triad”—weapons, horse harness, and animal style. Here we address one of its key elements, horse harness, specifi cally new fi nds from Gerasimovka in the Ulan District of Eastern Kazakhstan. They are relevant to certain aspects of the early nomadic material culture in the eastern fringes of the Saka-Siberian world. These items show signifi cant variation, sometimes within one and the same cemetery. Parallels to the Gerasimovka fi nd suggest that it is contemporaneous with the Arzhan stage of the early Scythian culture, and that during that time Eastern Kazakhstan played a major role in migratory processes. Recent fi ndings relating to early Scytho-Siberian cultures indicate the critical importance of chronology and cultural ties for reconstructing ethno-cultural processes in Early Iron Age Eurasia.
We present direct real-time experimental measurements and numerical modeling of temporal and statistical properties for the Ytterbium-doped fiber laser with spectral bandwidth of ~2 GHz.

The obtained results demonstrate nearly exponential probability density function for intensity fluctuations. A significant decrease below the Gaussian probability has been experimentally observed for intensity fluctuations having value more than 2.5 of average intensity that may be treated as indication of some mode correlations.
Burn injury is an important medical problem, as it is accompanied by high mortality rates in burn shock. Aim of the study was to conduct an ultrastructural stereological analysis of changes in the blood microvessels of the left ventricular myocardium in burn shock. Material and methods . Myocardial samples during the early section were collected 2 hours after the detection of biological death in the victims from severe burn shock (3 men and 2 women); age group 32-44 years. An ultrastructural study of endothelial cells of the microvasculature of the left ventricular myocardium was carried out. Results and discussion. The development of severe burn shock is accompanied by changes in the ultrastructure of the endothelial cells of the blood microvessels of the left ventricular myocardium, which is associated with intracellular degradation and exocytosis. These ultrastructural changes may indicate impairment of vesicular transport in the endothelium of the myocardial microvessels in burn shock. A feature of the ultrastructure of the endothelium was the heterogeneity of the endothelial cells of the blood capillaries due to the revealed dark and light endothelial cells, which differ in the saturation of the cytoplasm with organelles. The new data obtained on changes in the ultrastructure of the endothelium of the microvasculature of the left ventricular myocardium can be informative in the development of approaches to intensive therapy of cardioprotective direction in combustiological patients with burn shock.
In this paper we examine methods and algorithms for visualizing three-dimensional non-Euclidean spherical and elliptical spaces with a first-person view, from insider's perspective

we propose an algorithm for implementing camera controls in such spaces, address an approach to visualizing properties of such spaces based on matrix and vector operations which enables us to perform some of the computations necessary for the visualization on GPUs using graphics APIs, describe an implementation of fog effects in such spaces for the purpose of simplifying navigation in them

An implementation of these approaches and algorithms that is intended for visualizing dynamic scenes in such spaces is presented
НҰРҒОЖИН Талғат Сейітжанұлы, медицина ғылымдарының
Deep carbon and nitrogen cycles played a critical role in the evolution of the Earth.

Here we report on successful studying of speciation in C-O-H-N systems with low nitrogen contents at 6.3 GPa and 1100 to 1400 °C. At fO2 near Fe-FeO (IW) equilibrium, the synthesised fluids contain more than thirty species. Among them, CH4, C2H6, C3H8 and C4H10 are main carbon species. All carbon species, except for C1-C4 alkanes and alcohols, occur in negligible amounts in the fluids generated in systems with low H2O, but С15-С18 alkanes are slightly higher and oxygenated hydrocarbons are more diverse at higher temperatures and H2O concentrations. At a higher oxygen fugacity of +2.5 Δlog fO2 (IW), the fluids almost lack methane and contain about 1 rel.% C2-C4 alkanes, as well as fractions of percent of C15-18 alkanes and notable contents of alcohols and carboxylic acids.

Methanimine (CH3N) is inferred to be the main nitrogen species in N-poor reduced fluids. Therefore, the behaviour of CH3N may control the nitrogen cycle in N-poor peridotitic mantle. Oxidation of fluids strongly reduces the concentration of CH4 and bulk carbon. However, higher alkanes, alcohols, and carboxylic acids can resist oxidation and should remain stable in mantle hydrous magmas.
The species composition of nematodes and their vectors were analyzed in the Tomsk region. It has been shown that all three species of malaria mosquitoes, Anopheles messeae s.s., An. daciae and An. beklemishevi, can transmit Dirofilaria repens in 89% of confirmed cases. The species-specific infection of the intermediate host with dirofilarias depends on the geographical location.
Erythromycin is an antibiotic that prolongs the QT-interval and causes Torsade de Pointes (TdP) by blocking the rapid delayed rectifying potassium current (I Kr ) without affecting either the slow delayed rectifying potassium current (I Ks ) or inward rectifying potassium current (I K1 ). Erythromycin exerts this effect in the range of 1.5 μM–100 μM. However, the mechanism of action underlying its cardiotoxic effect and its role in the induction of arrhythmias, especially in multicellular cardiac experimental models, remain unclear. In this study the re-entry formation, conduction velocity, and maximum capture rate were investigated in a monolayer of human induced pluripotent stem cell (iPSC)-derived cardiomyocytes from a healthy donor and in a neonatal rat ventricular myocyte (NRVM) monolayer using the optical mapping method under erythromycin concentrations of 15, 30, and 45 μM. In the monolayer of human iPSC-derived cardiomyocytes, the conduction velocity (CV) varied up to 12±9% at concentrations of 15–45 μM as compared with that of the control, whereas the maximum capture rate (MCR) declined substantially up to 28±12% ( p < 0.05). In contrast, the tests on the NRVM monolayer showed no significant effect on the MCR. The results of the arrhythmogenicity test provided evidence for a “window” of concentrations of the drug (15 to 30 μM) at which the probability of re-entry increased.
We consider an equilibrium problem for a 2D elastic body with a thin elastic inclusion. It is assumed that the inclusion is partially delaminated, therefore providing the presence of a crack. Inequality type boundary conditions are imposed at the crack faces to prevent a mutual penetration of the faces.

Differentiability properties of the energy functional with respect to the crack length are analyzed. We prove an existence of the derivative and find a formula for this derivative.

It is shown that the formula for the derivative can be written in the form of a singular invariant integral.
We analyze the one-photon mechanism of $e^+e^-$ pair production in the collision of nonrelativistic nuclei. The contribution of electric quadrupole radiation of virtual photon to the corresponding cross section is found. The effect of the finite nuclear size is considered in detail. A comparison is made with the contribution of electric dipole radiation of virtual photon and with the contribution of the two-photon pair production mechanism. It is shown that the contribution of electric quadrupole radiation is dominant in a wide range of relative velocities. The cross section for the production of $e^+e^-$ pair with the capture of an electron by one of the nuclei is also analyzed.
Statistics show negative forecasts of the demographic indicators of the Russian population including their size and health. The human habitat which has been deteriorating in recent decades causes cardinal changes in the assortment and variety of food and significantly contributes to the reduction of their biological value. The depletion of food products (FP) of vegetable and animal origin in vital mineral elements, vitamins and other physiologically active components represents a serious long-term threat to human health and the national security.

Industrial methods of enriching FP have certain limitations: a narrow set of micronutrients, their interaction among themselves and accessibility for not all groups of the population. One way to reduce the negative consequences is through the introduction and breeding of new for Russia species and varieties of agricultural plants and organize a mass production of functional foods (FF) that contribute to the prevention and/or suspension of the development of dangerous diseases and slowing down the aging process. The solution of this multifaceted problem lies in changing the consumption structure of foods and their chemical composition conditioned by both the assortment of grown plant species and cultivars of food plants, as well as the composition and quality of soils, fertilizers and the conditions for crop cultivation.

Taking into account the prevailing demographic situation in the Russian Federation, it is necessary to create a comprehensive national program for the allocation of new high-content sources of FF ingredients based on traditional and underutilized crops, cultivars and forms of cereal, vegetable and fruit crops and their inclusion in agricultural production as well as existing and newly created technological processes in food industry. The advantages of creating and developing a national system of the functional food in Russia will be: the improvement of public health and life expectancy, the reduction of the Federal Compulsory Medical Insurance Fund expenditures and the development of business structures involved in the production of the FF.
BACKGROUND & nbsp;Perioperative bleeding is common in patients undergoing noncardiac surgery. Tranexamic acid is an antifibrinolytic drug that may safely decrease such bleeding.& nbsp;METHODS & nbsp;We conducted a trial involving patients undergoing noncardiac surgery. Patients were randomly assigned to receive tranexamic acid (1-g intravenous bolus) or placebo at the start and end of surgery (reported here) and, with the use of a partial factorial design, a hypotension-avoidance or hypertension-avoidance strategy (not reported here). The primary efficacy outcome was life-threatening bleeding, major bleeding, or bleeding into a critical organ (composite bleeding outcome) at 30 days. The primary safety outcome was myocardial injury after noncardiac surgery, nonhemorrhagic stroke, peripheral arterial thrombosis, or symptomatic proximal venous thromboembolism (composite cardiovascular outcome) at 30 days. To establish the noninferiority of tranexamic acid to placebo for the composite cardiovascular outcome, the upper boundary of the one-sided 97.5% confidence interval for the hazard ratio had to be below 1.125, and the one-sided P value had to be less than 0.025.& nbsp;RESULTS & nbsp;A total of 9535 patients underwent randomization. A composite bleeding outcome event occurred in 433 of 4757 patients (9.1%) in the tranexamic acid group and in 561 of 4778 patients (11.7%) in the placebo group (hazard ratio, 0.76; 95% confidence interval [CI], 0.67 to 0.87; absolute difference, -2.6 percentage points; 95% CI, -3.8 to -1.4; two-sided P < 0.001 for superiority). A composite cardiovascular outcome event occurred in 649 of 4581 patients (14.2%) in the tranexamic acid group and in 639 of 4601 patients (13.9%) in the placebo group (hazard ratio, 1.02; 95% CI, 0.92 to 1.14; upper boundary of the one-sided 97.5% CI, 1.14; absolute difference, 0.3 percentage points; 95% CI, -1.1 to 1.7; one-sided P=0.04 for noninferiority).& nbsp;CONCLUSIONSAmong patients undergoing noncardiac surgery, the incidence of the composite bleeding outcome was significantly lower with tranexamic acid than with placebo. Although the between-group difference in the composite cardiovascular outcome was small, the noninferiority of tranexamic acid was not established.& nbsp;
CMA is closely interconnected with the TRANSFAC ® database. In particular, CMA uses the positional weight matrix (PWM) library collected in TRANSFAC ® and therefore provides the possibility to search for a large variety of different TF binding sites.

Composite Module Analyst (CMA) is a novel software tool aiming to identify promoter-enhancer models based on the composition of transcription factor (TF) binding sites and their pairs. We model the structure of the long gene regulatory regions by a Boolean function that joins several local modules, each consisting of co-localized TF binding sites. Having as an input a set of co-regulated genes, CMA builds the promoter model and optimizes the parameters of the model automatically by applying a genetic-regression algorithm. We use a multicomponent fitness function of the algorithm which includes several statistical criteria in a weighted linear function.

We show examples of successful application of CMA to a microarray data on transcription profiling of TNF-alpha stimulated primary human endothelial cells. The CMA web server is freely accessible at http://www.gene-regulation.com/pub/programs/cma/CMA.html . An advanced version of CMA is also a part of the commercial system ExPlain™ ( www.biobase.de ) designed for causal analysis of gene expression data.
Vapor condensation of the HFE-7100 in loop heat pipe was studied experimentally and theoretically. Numerical calculations of the vapor condensation on the curvilinear fin have been performed. Numerical, theoretical and experimental data are in a good agreement. Minimal condensate film thickness on the top of the fin has been determined and increases monotonously with the increase in the temperature drop.