In 1698 Whiston obtained a vicarage in Suffolk at Lowestoft-with-Kissingland. Up to this time he had continued to hold his fellowship at Clare College, but he resigned in June 1699 which he was forced to do in order to marry.
Sa 1698 Whiston na nakuha ng isang tahanan ng kinatawan sa Suffolk sa Lowestoft-sa-Kissingland. Hanggang sa oras na ito niya ang patuloy na hawakan ang kanyang relasyon sa Clare College, ngunit siya nakatalaga sa Hunyo 1699 na kung saan siya ay pinilit na gawin upang magpakasal.