Buggy python submission (verdict: Time Limit Exceeded):
N, C = map(int, input().split())              # 同上。map関数を使うとこのように書ける

D = [[0 for i in range(C)] for j in range(C)]
c = [[0 for i in range(N)] for j in range(N)]
# iwakan = [[[0 for i in range(N)] for j in range(N)] for k in range(C)]

for i in range(C):
    D[i] = list(map(int, input().split()))

for i in range(N):
    c[i] = list(map(int, input().split()))

# まず違和感リストを作る。
# for i in range(C):
#     for j in range(N):
#         for k in range(N):
#             iwakan[i][j][k] = D[c[j][k] - 1][i]

'''
Gij0 : (i + j) % 3 == 0 となる場所
Gij1 : (i + j) % 3 == 1 となる場所
Gij2 : (i + j) % 3 == 2 となる場所
とした時に、
Gijnに属する場所全ての色をaに塗り替える場合の違和感の合計を
iwakan[n][a]とする。
iwakan[n][a]を全て求めるための計算量は、30*500*500 = 7500000
iwakan を用いて全ての色の塗り替えの組み合わせを求めるための計算量は
30 * 29 * 28 = 24360
'''

iwakan = [[0 for i in range(C)] for j in range(3)]

for a in range(C):
    for i in range(N):
        for j in range(N):
            if (i + j) % 3 == 0:
                iwakan[0][a] = iwakan[0][a] + D[c[i][j] - 1][a]
            elif (i + j) % 3 == 1:
                iwakan[1][a] = iwakan[1][a] + D[c[i][j] - 1][a]
            else:
                iwakan[2][a] = iwakan[2][a] + D[c[i][j] - 1][a]

sum_min = float("inf")
for i in range(C):
    for j in range(C):
        for k in range(C):
            if (i == j) or (j == k) or (k == i):
                pass
            else:
                sum_tmp = iwakan[0][i] + iwakan[1][j] + iwakan[2][k]
                if sum_min > sum_tmp:
                    sum_min = sum_tmp

print(sum_min)


Fixed submission:
# import time
N, C = map(int, input().split())              # 同上。map関数を使うとこのように書ける

D = [[0 for i in range(C)] for j in range(C)]
c = [[0 for i in range(N)] for j in range(N)]
# iwakan = [[[0 for i in range(N)] for j in range(N)] for k in range(C)]

for i in range(C):
    D[i] = list(map(int, input().split()))

for i in range(N):
    c[i] = list(map(int, input().split()))

# まず違和感リストを作る。
# for i in range(C):
#     for j in range(N):
#         for k in range(N):
#             iwakan[i][j][k] = D[c[j][k] - 1][i]

'''
Gij0 : (i + j) % 3 == 0 となる場所
Gij1 : (i + j) % 3 == 1 となる場所
Gij2 : (i + j) % 3 == 2 となる場所
とした時に、
Gijnに属する場所全ての色をaに塗り替える場合の違和感の合計を
iwakan[n][a]とする。
iwakan[n][a]を全て求めるための計算量は、30*500*500 = 7500000
iwakan を用いて全ての色の塗り替えの組み合わせを求めるための計算量は
30 * 29 * 28 = 24360
'''

# t1 = time.time()

# Gijnに属する色の数を合計したリストを作る。
numOfColors = [[0 for i in range(C)] for j in range(3)]
for i in range(N):
    for j in range(N):
        if (i + j) % 3 == 0:
            numOfColors[0][c[i][j] - 1] = numOfColors[0][c[i][j] - 1] + 1
        if (i + j) % 3 == 1:
            numOfColors[1][c[i][j] - 1] = numOfColors[1][c[i][j] - 1] + 1
        if (i + j) % 3 == 2:
            numOfColors[2][c[i][j] - 1] = numOfColors[2][c[i][j] - 1] + 1

iwakan = [[0 for i in range(C)] for j in range(3)]
for i in range(3):
    for j in range(C):
        for a in range(C):
            iwakan[i][j] = iwakan[i][j] + numOfColors[i][a] * D[a][j]

# t2 = time.time()

sum_min = float("inf")
for i in range(C):
    for j in range(C):
        for k in range(C):
            if (i == j) or (j == k) or (k == i):
                pass
            else:
                sum_tmp = iwakan[0][i] + iwakan[1][j] + iwakan[2][k]
                if sum_min > sum_tmp:
                    sum_min = sum_tmp

# t3 = time.time()

print(sum_min)

# elapsed_time1 = t2 - t1
# elapsed_time2 = t3 - t2
# print(f'time1: {elapsed_time1}')
# print(f'time2: {elapsed_time2}')

Buggy python submission (verdict: Time Limit Exceeded):
N, C = map(int, input().split())              # 同上。map関数を使うとこのように書ける

D = [[0 for i in range(C)] for j in range(C)]
c = [[0 for i in range(N)] for j in range(N)]
# iwakan = [[[0 for i in range(N)] for j in range(N)] for k in range(C)]

for i in range(C):
    D[i] = list(map(int, input().split()))

for i in range(N):
    c[i] = list(map(int, input().split()))

# まず違和感リストを作る。
# for i in range(C):
#     for j in range(N):
#         for k in range(N):
#             iwakan[i][j][k] = D[c[j][k] - 1][i]

# 違和感リストから違和感の合計直を求める。
sum_min = float("inf")

for i in range(C):
    for j in range(C):
        for k in range(C):
            if (i == j) or (j == k) or (k == i):
                pass
            else:
                sum_tmp = 0
                for l in range(N):
                    for m in range(N):
                        if(l + m) % 3 == 0:
                            # sum_tmp = sum_tmp + iwakan[i][l][m]
                            sum_tmp = sum_tmp + D[c[l][m] - 1][i]
                        elif(l + m) % 3 == 1:
                            # sum_tmp = sum_tmp + iwakan[j][l][m]
                            sum_tmp = sum_tmp + D[c[l][m] - 1][j]
                        else:
                            # sum_tmp = sum_tmp + iwakan[k][l][m]
                            sum_tmp = sum_tmp + D[c[l][m] - 1][k]
                if sum_min > sum_tmp:
                    sum_min = sum_tmp

print(sum_min)

Fixed submission:
# import time
N, C = map(int, input().split())              # 同上。map関数を使うとこのように書ける

D = [[0 for i in range(C)] for j in range(C)]
c = [[0 for i in range(N)] for j in range(N)]
# iwakan = [[[0 for i in range(N)] for j in range(N)] for k in range(C)]

for i in range(C):
    D[i] = list(map(int, input().split()))

for i in range(N):
    c[i] = list(map(int, input().split()))

# まず違和感リストを作る。
# for i in range(C):
#     for j in range(N):
#         for k in range(N):
#             iwakan[i][j][k] = D[c[j][k] - 1][i]

'''
Gij0 : (i + j) % 3 == 0 となる場所
Gij1 : (i + j) % 3 == 1 となる場所
Gij2 : (i + j) % 3 == 2 となる場所
とした時に、
Gijnに属する場所全ての色をaに塗り替える場合の違和感の合計を
iwakan[n][a]とする。
iwakan[n][a]を全て求めるための計算量は、30*500*500 = 7500000
iwakan を用いて全ての色の塗り替えの組み合わせを求めるための計算量は
30 * 29 * 28 = 24360
'''

# t1 = time.time()

# Gijnに属する色の数を合計したリストを作る。
numOfColors = [[0 for i in range(C)] for j in range(3)]
for i in range(N):
    for j in range(N):
        if (i + j) % 3 == 0:
            numOfColors[0][c[i][j] - 1] = numOfColors[0][c[i][j] - 1] + 1
        if (i + j) % 3 == 1:
            numOfColors[1][c[i][j] - 1] = numOfColors[1][c[i][j] - 1] + 1
        if (i + j) % 3 == 2:
            numOfColors[2][c[i][j] - 1] = numOfColors[2][c[i][j] - 1] + 1

iwakan = [[0 for i in range(C)] for j in range(3)]
for i in range(3):
    for j in range(C):
        for a in range(C):
            iwakan[i][j] = iwakan[i][j] + numOfColors[i][a] * D[a][j]

# t2 = time.time()

sum_min = float("inf")
for i in range(C):
    for j in range(C):
        for k in range(C):
            if (i == j) or (j == k) or (k == i):
                pass
            else:
                sum_tmp = iwakan[0][i] + iwakan[1][j] + iwakan[2][k]
                if sum_min > sum_tmp:
                    sum_min = sum_tmp

# t3 = time.time()

print(sum_min)

# elapsed_time1 = t2 - t1
# elapsed_time2 = t3 - t2
# print(f'time1: {elapsed_time1}')
# print(f'time2: {elapsed_time2}')

Buggy python submission (verdict: Time Limit Exceeded):
N, C = map(int, input().split())              # 同上。map関数を使うとこのように書ける

D = [[0 for i in range(C)] for j in range(C)]
c = [[0 for i in range(N)] for j in range(N)]
iwakan = [[[0 for i in range(N)] for j in range(N)] for k in range(C)]

for i in range(C):
    D[i] = input().split()

for i in range(C):
    for j in range(C):
        D[i][j] = int(D[i][j])

for i in range(N):
    c[i] = input().split()

for i in range(N):
    for j in range(N):
        c[i][j] = int(c[i][j])


# まず違和感リストを作る。
for i in range(C):
    for j in range(N):
        for k in range(N):
            iwakan[i][j][k] = D[c[j][k] - 1][i]

# 違和感リストから違和感の合計直を求める。
sum_min = 9999999999

for i in range(C):
    for j in range(C):
        for k in range(C):
            if (i == j) or (j == k) or (k == i):
                pass
            else:
                sum_tmp = 0
                for l in range(N):
                    for m in range(N):
                        if(l + m) % 3 == 0:
                            sum_tmp = sum_tmp + iwakan[i][l][m]
                        elif(l + m) % 3 == 1:
                            sum_tmp = sum_tmp + iwakan[j][l][m]
                        else:
                            sum_tmp = sum_tmp + iwakan[k][l][m]
                if sum_min > sum_tmp:
                    sum_min = sum_tmp

print(sum_min)


Fixed submission:
# import time
N, C = map(int, input().split())              # 同上。map関数を使うとこのように書ける

D = [[0 for i in range(C)] for j in range(C)]
c = [[0 for i in range(N)] for j in range(N)]
# iwakan = [[[0 for i in range(N)] for j in range(N)] for k in range(C)]

for i in range(C):
    D[i] = list(map(int, input().split()))

for i in range(N):
    c[i] = list(map(int, input().split()))

# まず違和感リストを作る。
# for i in range(C):
#     for j in range(N):
#         for k in range(N):
#             iwakan[i][j][k] = D[c[j][k] - 1][i]

'''
Gij0 : (i + j) % 3 == 0 となる場所
Gij1 : (i + j) % 3 == 1 となる場所
Gij2 : (i + j) % 3 == 2 となる場所
とした時に、
Gijnに属する場所全ての色をaに塗り替える場合の違和感の合計を
iwakan[n][a]とする。
iwakan[n][a]を全て求めるための計算量は、30*500*500 = 7500000
iwakan を用いて全ての色の塗り替えの組み合わせを求めるための計算量は
30 * 29 * 28 = 24360
'''

# t1 = time.time()

# Gijnに属する色の数を合計したリストを作る。
numOfColors = [[0 for i in range(C)] for j in range(3)]
for i in range(N):
    for j in range(N):
        if (i + j) % 3 == 0:
            numOfColors[0][c[i][j] - 1] = numOfColors[0][c[i][j] - 1] + 1
        if (i + j) % 3 == 1:
            numOfColors[1][c[i][j] - 1] = numOfColors[1][c[i][j] - 1] + 1
        if (i + j) % 3 == 2:
            numOfColors[2][c[i][j] - 1] = numOfColors[2][c[i][j] - 1] + 1

iwakan = [[0 for i in range(C)] for j in range(3)]
for i in range(3):
    for j in range(C):
        for a in range(C):
            iwakan[i][j] = iwakan[i][j] + numOfColors[i][a] * D[a][j]

# t2 = time.time()

sum_min = float("inf")
for i in range(C):
    for j in range(C):
        for k in range(C):
            if (i == j) or (j == k) or (k == i):
                pass
            else:
                sum_tmp = iwakan[0][i] + iwakan[1][j] + iwakan[2][k]
                if sum_min > sum_tmp:
                    sum_min = sum_tmp

# t3 = time.time()

print(sum_min)

# elapsed_time1 = t2 - t1
# elapsed_time2 = t3 - t2
# print(f'time1: {elapsed_time1}')
# print(f'time2: {elapsed_time2}')

Buggy python submission (verdict: Time Limit Exceeded):
N, C = map(int, input().split())              # 同上。map関数を使うとこのように書ける

D = [[0 for i in range(C)] for j in range(C)]
c = [[0 for i in range(N)] for j in range(N)]
iwakan = [[[0 for i in range(N)] for j in range(N)] for k in range(C)]

for i in range(C):
    D[i] = input().split()

for i in range(C):
    for j in range(C):
        D[i][j] = int(D[i][j])

for i in range(N):
    c[i] = input().split()

for i in range(N):
    for j in range(N):
        c[i][j] = int(c[i][j])


# まず違和感リストを作る。
for i in range(C):
    for j in range(N):
        for k in range(N):
            iwakan[i][j][k] = D[c[j][k] - 1][i]

# 違和感リストから違和感の合計直を求める。
sum_min = 9999999999

for i in range(C):
    for j in range(C):
        for k in range(C):
            if (i == j) or (j == k) or (k == i):
                pass
            else:
                sum_tmp = 0
                for l in range(N):
                    for m in range(N):
                        if(l + m) % 3 == 0:
                            sum_tmp = sum_tmp + iwakan[i][l][m]
                        elif(l + m) % 3 == 1:
                            sum_tmp = sum_tmp + iwakan[j][l][m]
                        else:
                            sum_tmp = sum_tmp + iwakan[k][l][m]
                if sum_min > sum_tmp:
                    sum_min = sum_tmp

print(sum_min)


Fixed submission:
# import time
N, C = map(int, input().split())              # 同上。map関数を使うとこのように書ける

D = [[0 for i in range(C)] for j in range(C)]
c = [[0 for i in range(N)] for j in range(N)]
# iwakan = [[[0 for i in range(N)] for j in range(N)] for k in range(C)]

for i in range(C):
    D[i] = list(map(int, input().split()))

for i in range(N):
    c[i] = list(map(int, input().split()))

# まず違和感リストを作る。
# for i in range(C):
#     for j in range(N):
#         for k in range(N):
#             iwakan[i][j][k] = D[c[j][k] - 1][i]

'''
Gij0 : (i + j) % 3 == 0 となる場所
Gij1 : (i + j) % 3 == 1 となる場所
Gij2 : (i + j) % 3 == 2 となる場所
とした時に、
Gijnに属する場所全ての色をaに塗り替える場合の違和感の合計を
iwakan[n][a]とする。
iwakan[n][a]を全て求めるための計算量は、30*500*500 = 7500000
iwakan を用いて全ての色の塗り替えの組み合わせを求めるための計算量は
30 * 29 * 28 = 24360
'''

# t1 = time.time()

# Gijnに属する色の数を合計したリストを作る。
numOfColors = [[0 for i in range(C)] for j in range(3)]
for i in range(N):
    for j in range(N):
        if (i + j) % 3 == 0:
            numOfColors[0][c[i][j] - 1] = numOfColors[0][c[i][j] - 1] + 1
        if (i + j) % 3 == 1:
            numOfColors[1][c[i][j] - 1] = numOfColors[1][c[i][j] - 1] + 1
        if (i + j) % 3 == 2:
            numOfColors[2][c[i][j] - 1] = numOfColors[2][c[i][j] - 1] + 1

iwakan = [[0 for i in range(C)] for j in range(3)]
for i in range(3):
    for j in range(C):
        for a in range(C):
            iwakan[i][j] = iwakan[i][j] + numOfColors[i][a] * D[a][j]

# t2 = time.time()

sum_min = float("inf")
for i in range(C):
    for j in range(C):
        for k in range(C):
            if (i == j) or (j == k) or (k == i):
                pass
            else:
                sum_tmp = iwakan[0][i] + iwakan[1][j] + iwakan[2][k]
                if sum_min > sum_tmp:
                    sum_min = sum_tmp

# t3 = time.time()

print(sum_min)

# elapsed_time1 = t2 - t1
# elapsed_time2 = t3 - t2
# print(f'time1: {elapsed_time1}')
# print(f'time2: {elapsed_time2}')