From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: 26 S: polyprotein [eastern equine encephalomyelitis virus EEEV,
Date: 27 Jan 93 06:01:27 GMT
Distribution: bionet
Checksum: 43965 9

LOCUS       S119924      4116 bp    RNA             UNA       21-JAN-1993
DEFINITION  26 S: polyprotein [eastern equine encephalomyelitis virus EEEV,
            strain 4789, Genomic RNA, 4116 nt]
ACCESSION   S49772
KEYWORDS    .
SOURCE      eastern equine encephalomyelitis virus EEEV strain 4789
  ORGANISM  Unclassified.
            Unclassified.
REFERENCE   1  (bases 1 to 4116)
  AUTHORS   Weaver,S.C., Hagenbaugh,A., Bellew,L.A. and Calisher,C.H.
  TITLE     Genetic characterization of an antigenic subtype of eastern equine
            encephalomyelitis virus.
  JOURNAL   Arch. Virol. 127, 305-314 (1992)
  STANDARD  full automatic
COMMENT     This entry [NCBI gibbsq 119924] was created by the journal scanning
            component of NCBI/GenBank at the National Library of Medicine.
            This sequence comes from Fig. 1.
            Region: 26 S.  
FEATURES             Location/Qualifiers
     CDS             59..3787
                     /note="mismatch(1151[S->T]).  For the protein sequence
                     (NCBI gibbsq 119931):  Method: conceptual translation
                     supplied by author.  This sequence comes from Fig. 1.
                     Author-given protein sequence is in conflict with the
                     conceptual translation"
                     /product="polyprotein"
                     /codon_start=1
                     /translation="MFPYPTLNYPPMAPINPMAYRDPNPPRRRWRPFRPPLAAQIEDL
                     RRSIANLTLKQRAPNPPAGPPAKRKKPAPKPKPAQAKKKRPPPPAKKQKRKPKPGKRQ
                     RMCMKLESDKTFPIMLNGQVNGYACVVGGRVFKPLHVEGRIDNEQLAAIKLKKASIYD
                     LEYGDVPQCMKSDTLQYTSDKPPGFYNWHHGAVQYENNRFTVPRGVGGKGDSGRPILD
                     NKGRVVAIVLGGVNEGSRTALSVVTWNQKGVTVKDTPEGSEPWSLATVMCVLANITFP
                     CDQPPCMPCCYEKNPHETLTMLEQNYDSRAYDQLLDAAVKCNARRTRRDLDTHFTQYK
                     LARPYIADCPNCGHSRCDSPIAIEEVRGDAHAGVIRIQTSAMFGLKTDGVDLAYMSFM
                     NGTTQKSIKIDNLHVRTSAPCSLVSHHGYYILAQCPPGDTVTVGFHDGPNRHTCTVAH
                     KVEFRPVGREKYRHPPEHGVKLPCNRYTHKRADQGHYVEMHQPGLVADHSLLSIHSAK
                     VKITVPSGAQVKYYCKCPDVREGITSSDHTTTCTDVKQCRAYLIDNKKWVYNSGRLPR
                     GEGDTFKGKLHVPFVPVKAKCIATLAPEPLVEHKHRTLILHLHPDHPTLLTTRSLGSD
                     ANPTRQWIERPTTVNFTVTGEGLEYIWGNHPPKRVWAQESGEGNPHGWPHEVVVYYYN
                     RYPLTTIIGLCTCVAIIMVSCVTSVWLLCRTRNLCITPYKLAPNAQVPILLALLCCIK
                     PTRADDTLQVLNYLWNNNQNFFWMQTLIPLAALIVCMRMLRCLFCCGPAFLLVCGALG
                     AAAYEHTAVMPNKVGIPYKALVERPGYAPVHLQIQLVNTSIIPSTNLEYITCKYKTKV
                     PSPVVKCCGATQCTSKPHPDYQCQVFTGVYPFMWGGAYCFCDTENTQMSEAYVERSEE
                     CSIDHAKAYKVHTGTVQAMVNITYGSVSWRSADVYVNGETPAKIGDAKLIIGPLSSAW
                     SPFDNKVVVYGHEVYNYDFPEYGTGKAGSFGDLQSRTSTSNDLYANTNLKLQRPQAGI
                     VHTPFTQAPSGFERWKRDKGAPLNDVAPFGCSIALEPLRAENCAVGSIPISIDIPDAA
                     FTRISETPTVSDLECKITECTYASDFGGIATVAYKSSKAGNCPIHSPSGVAVIKENDV
                     TLAESGSFTFHFSTANIHPAFKLQVCTSGVTCKGDCKPPKDHIVDYPAQHTESFTSAI
                     SATAWSWLKVLVGGTSAFIVLGLIATAVVALVLFFHRH"
BASE COUNT     1148 a   1066 c    964 g    938 t
ORIGIN      
        1 ataggttgtg cattagtacc taacctattt atattatatt gctatctaaa tatcagagat
       61 gttcccatac cctacactta actacccgcc tatggcgccg attaacccga tggcctaccg
      121 ggatcctaat ccgcctaggc gcaggtggcg gccctttagg ccaccacttg cagctcaaat
      181 tgaggacctg agacgttcca ttgctaacct gactttgaaa caacgagcac ctaaccctcc
      241 agcaggaccg cccgccaaac gcaagaagcc tgcgcccaag cctaagcctg ctcaggcgaa
      301 aaagaagcga ccaccaccac ctgccaagaa acaaaaacgc aaacctaaac caggcaaacg
      361 acagcgaatg tgtatgaagc tagagtcaga taaaacgttt ccgatcatgt tgaacggaca
      421 ggtgaatggt tacgcgtgcg tcgtgggtgg acgagtgttt aaaccgctgc acgtagaagg
      481 cagaatagac aatgagcaac tggccgctat caagctgaag aaggccagca tatatgacct
      541 tgagtacggt gatgtgccac aatgcatgaa atcagatacc ctccagtaca ccagtgacaa
      601 gcctcctggc ttttataact ggcatcatgg agctgtgcag tatgagaaca acaggttcac
      661 cgtaccacga ggggtcggtg gaaagggcga cagcgggaga cctattcttg acaacaaagg
      721 tagagtcgtc gcaattgtcc tgggtggagt caacgaagga tccaggacgg ctctatcagt
      781 ggtgacatgg aaccaaaagg gggttacagt caaagataca ccagaggggt cagagccatg
      841 gtcgcttgcc actgtcatgt gcgtcctggc caatatcacg tttccatgtg atcaaccacc
      901 ctgcatgcca tgctgttatg aaaagaatcc acacgaaaca ctcaccatgc tggaacagaa
      961 ttacgacagc cgagcctatg atcagctgct cgatgccgct gtgaaatgta atgctaggag
     1021 aaccaggaga gatttggaca ctcatttcac ccagtataag ttggcacgcc cgtatattgc
     1081 tgattgccct aactgtgggc atagtcggtg cgacagccct atagctatag aagaagtcag
     1141 aggggatgcg catgcaggag tcatccgcat ccagacatca gctatgttcg gtctgaagac
     1201 ggatggagtc gatttggcct acatgagttt catgaacggc acaacgcaga aatcaataaa
     1261 gatcgacaac ctgcatgtgc gcacctcagc cccttgttcc ctcgtgtcgc accacggcta
     1321 ttacatcttg gctcaatgcc caccagggga cacggttaca gttgggtttc acgacgggcc
     1381 taaccgccat acgtgcacag ttgcccataa ggtagaattc aggccagtgg gtagagagaa
     1441 ataccgtcac ccacctgaac atggagttaa attaccgtgt aaccgttaca ctcacaagcg
     1501 tgcagaccaa ggacactatg ttgagatgca tcaacccggg ctagttgccg accactctct
     1561 ccttagcatc cacagtgcca aggtgaaaat tacggtaccg agcggcgccc aagtgaaata
     1621 ctactgcaag tgcccagatg tacgagaggg aattaccagc agcgaccata caaccacctg
     1681 cacggatgtc aaacaatgca gggcttacct gattgacaac aaaaaatggg tgtacaactc
     1741 tggaagactg cctcgaggag agggcgacac ttttaaagga aaacttcatg tgccctttgt
     1801 gcctgttaag gccaagtgca ttgccacgct ggcaccggag cctctagttg agcacaaaca
     1861 ccgcaccctg attttacacc tgcacccgga ccatccgacc ttgctgacga ccaggtcact
     1921 tggaagtgat gcaaatccaa ctcgacaatg gattgagcga ccaacaactg tcaatttcac
     1981 agtcaccgga gaagggttgg agtatatctg gggaaaccat ccaccaaaaa gagtatgggc
     2041 tcaagagtca ggagaaggga acccacatgg atggccgcac gaagtggtag tctattacta
     2101 caacagatac ccgttaacca caattatcgg gttatgcacc tgtgtggcta tcatcatggt
     2161 ctcttgtgtc acatccgtgt ggctcctttg caggactcgc aatctttgca taaccccgta
     2221 taaactagcc ccgaacgctc aagtcccaat actcctggcg ttactttgct gcattaagcc
     2281 gacgagggca gacgacacct tgcaagtgct gaattatctg tggaacaaca atcaaaactt
     2341 tttctggatg cagacgctta tcccacttgc agcgcttatc gtatgcatgc gcatgctgcg
     2401 ctgcttattt tgctgtgggc cggctttttt acttgtctgc ggcgccttgg gcgccgcagc
     2461 gtacgaacac acagcagtga tgccgaacaa ggtggggatc ccgtataaag ctttagtcga
     2521 acgcccaggt tatgcacccg ttcacctaca gatacagctg gttaatacca gcataattcc
     2581 atcaactaac ctggagtaca tcacctgcaa gtacaagaca aaagtgccgt ctccagtagt
     2641 gaaatgctgc ggtgccactc aatgtacctc caaaccccat cctgactatc agtgtcaggt
     2701 gtttacaggt gtttacccat tcatgtgggg aggagcctac tgcttctgcg acaccgaaaa
     2761 cacccagatg agcgaggcgt atgtagagcg ctcggaagag tgctctattg accacgcaaa
     2821 agcttataaa gtacacacag gcactgttca ggcaatggtg aacataactt atgggagcgt
     2881 cagctggaga tctgcagatg tctacgtcaa tggtgaaact cccgcgaaaa taggagatgc
     2941 caaactcatc ataggtccac tgtcatctgc gtggtcccca ttcgataaca aggtggtggt
     3001 ttatgggcat gaagtgtata attacgactt tcctgagtac ggcaccggca aagcaggctc
     3061 ttttggagac ctgcaatcac gcacatcaac cagcaacgat ctgtacgcaa acaccaactt
     3121 gaagctacaa cgaccccagg ctggtatcgt gcacacacct ttcacccagg cgccctctgg
     3181 cttcgaacga tggaaaaggg acaaaggggc accgttgaac gacgtagccc cgtttggctg
     3241 ttcgattgcc ctggagccgc tccgtgcaga aaattgcgca gtgggaagca tccctatatc
     3301 tatagatata cccgatgcgg ctttcaccag aatatctgaa acaccgacag tctcagacct
     3361 ggaatgcaaa attacggagt gtacttatgc ctccgatttc ggtggtatag ccaccgttgc
     3421 ctacaaatcc agtaaagcag gaaactgtcc aattcattct ccatcaggtg ttgcagttat
     3481 taaagagaat gacgtcactc ttgctgagac gggatcattt acattccact tctccactgc
     3541 aaacatccat cctgctttta agctgcaggt ctgcaccagt ggagttacct gcaaaggaga
     3601 ttgcaagcca ccgaaagatc acatcgtcga ttatccagca caacataccg aatcctttac
     3661 gtcggcgata tccgccaccg cgtggtcgtg gctaaaagtg ctggtaggag gaacatcagc
     3721 atttattgtt ctggggctta ttgctacagc agtggttgcc ctagttctgt tcttccatag
     3781 acattaacat cttgtcaacc acataacact acaggcagtg tataaggctg tcttactaaa
     3841 cattaaattc accctagttc gatgtccttc cgagctatgg tgacggtggt gcataatgcc
     3901 gcccgatgca gtgcataagg ctgctatatt accaaattat aacactaagg gcagtgcata
     3961 atgctgcgtc ctaagtaatt ttatacacac tttataatca ggcataattg ccgtatatac
     4021 aattacacta caggtaatat accgcctctt ataaacacta caggcagcgc ataatgctgc
     4081 cttttatatc aatttacaaa atcatattaa tttttc
//