From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Cucumber mosaic virus (Fny-CMV) RNA 3, complete genome.
Date: 21 Jul 92 10:06:46 GMT
Distribution: bionet
Checksum: 30322     6

LOCUS       MCVCP3A1     2216 bp ss-RNA             VRL       21-JUL-1992
DEFINITION  Cucumber mosaic virus (Fny-CMV) RNA 3, complete genome.
ACCESSION   D10538
KEYWORDS    3a protein; RNA encapsidation; capsid protein.
SOURCE      Cucumber mosaic virus (strain Fny) cDNA to genomic RNA.
  ORGANISM  Cucumber mosaic virus
            Viridae; ss-RNA nonenveloped viruses; Isometric ss-RNA viruses;
            Cucumovirus.
REFERENCE   1  (bases 1 to 2216)
  AUTHORS   Owen,J.E., Shintaku,M., Aeschleman,P., Tahar,S. and Palukaitis,P.
  TITLE     Nucleotide sequence and evolutionary relationships of cucumber
            mosaic virus (CMV) strains: CMV RNA 3
  JOURNAL   J. Gen. Virol. 71, 2243-2249 (1990)
  STANDARD  full staff_review
COMMENT     Submitted (20-Feb-1992) to DDBJ by:
            Michael Shintaku
            Department of Molecular Virology
            The Samuel Roberts Noble Foundation
            P O Box 2180
            Ardmore, Oklahoma 73402
            U.S.A.
            Phone:  405-223-5810
            Email:  MSHINTAKU@AARDVARK.UCS.UOKNOR.EDU
            Fax:    052-783-0719
FEATURES             Location/Qualifiers
     CDS             120..959
                     /product="3a protein"
                     /gene="3a"
                     /evidence=EXPERIMENTAL
                     /codon_start=1
                     /translation="MAFQGTSRTLTQQSSAATSDDLQKILFSPEAIKKMATECDLGRH
                     HWMRADNAISVRPLVPEVTHGRIASFFKSGYDVGELCSKGYMSVPQVLCAVTRTVSTD
                     AEGSLRIYLADLGDKELSPIDGQCVSLHNHDLPALVSFQPTYDCPMETVGNRKRCFAV
                     VIERHGYIGYTGTTASVCSNWQARFSSKNNNYTHIAAGKTLVLPFNRLAEQTKPSAVA
                     RLLKSQLNNIESSQYLLTNAKINQNARSESEDLNVESPPAAIGSSSASRSEAFRPQVV
                     NGL"
     misc_feature    960..1256
                     /note="Fny-CMV RNA3 intercistronic region"
                     /evidence=EXPERIMENTAL
     CDS             1257..1913
                     /function="CMV RNA encapsidation"
                     /product="capsid protein"
                     /gene="CP"
                     /evidence=EXPERIMENTAL
                     /codon_start=1
                     /translation="MDKSESTSAGRNRRRRPRRGSRSAPSSADANFRVLSQQLSRLNK
                     TLAAGRPTINHPTFVGSERCRPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVTEYDKK
                     LVSRIQIRVNPLPKFDSTVWVTVRKVPASSDLSVAAISAMFADGASPVLVYQYAASGV
                     QANNKLLYDLSAMRADIGDMRKYAVLVYSKDDALETDELVLHVDIEHQRIPTSGVLPV
                     "
BASE COUNT      517 a    525 c    528 g    646 t
ORIGIN
        1 gtaatcttac cactgtgtgt gtgcgtgtgt gtgtgtcgag tcgtgttgtc cgcacatttg
       61 agtcgtgctg tccgcacata ttttatcttt tgggtacagt gtgttagatt tcccgaggca
      121 tggctttcca aggtaccagt aggactttaa ctcaacagtc ctcagcggct acgtctgacg
      181 atcttcaaaa gatattattt agccctgaag ccattaagaa aatggctact gagtgtgacc
      241 taggccggca tcattggatg cgcgctgata atgctatttc agtccggccc ctcgttcccg
      301 aagtaaccca cggtcgtatt gcttccttct ttaagtctgg atatgatgtt ggtgaattat
      361 gctcaaaagg atacatgagt gtccctcaag tgttatgtgc tgttactcga acagtttcca
      421 ctgatgctga agggtctttg agaatttact tagctgatct gggcgacaag gagttatctc
      481 ccatagatgg gcaatgcgtt tcgttacata accatgatct tcccgctttg gtgtctttcc
      541 aaccgacgta tgattgtcct atggaaacag ttgggaatcg taagcggtgt tttgctgtcg
      601 ttatcgaaag acatggttac attgggtata ccggtaccac agctagcgtg tgtagtaatt
      661 ggcaagcaag gttttcatcc aagaataaca actacactca tatcgcagct gggaagactc
      721 tagtactgcc tttcaacaga ttagctgagc aaacaaaacc gtcagctgtc gctcgcctgt
      781 tgaagtcgca attgaacaac attgaatctt cgcaatattt gttaacgaat gcgaagatta
      841 atcaaaatgc gcgcagtgag tccgaggatt taaatgttga gagccctccc gccgcaatcg
      901 ggagttcttc cgcgtcccgc tccgaagcct tcagaccgca ggtggttaac ggtctttagc
      961 actttggtgc gtattagtat ataagtattt gtgagtctgt acataatact atatctatag
     1021 tgtcctgtgt gagttgatac agtagacatc tgtgacgcga tgccgtgttg agaagggaac
     1081 acatctggtt ttagtaagcc tacatcatag ttttgaggtt caattcctct tactccctgt
     1141 tgagcccctt actttctcat ggatgcttct ccgcgagatt gcgttattgt ctactgacta
     1201 tatagagagt gtttgtgctg tgttttctct tttgtgtcgt agaattgagt cgagtcatgg
     1261 acaaatctga atcaaccagt gctggtcgta accgtcgacg tcgtccgcgt cgtggttccc
     1321 gctccgcccc ctcctccgcg gatgctaact ttagagtctt gtcgcagcag ctttcgcgac
     1381 ttaataagac gttagcagct ggtcgtccaa ctattaacca cccaaccttt gtagggagtg
     1441 aacgctgtag acctgggtac acgttcacat ctattaccct aaagccacca aaaatagacc
     1501 gtgggtctta ttacggtaaa aggttgttac tacctgattc agtcacggaa tatgataaga
     1561 agcttgtttc gcgcattcaa attcgagtta atcctttgcc gaaatttgat tctaccgtgt
     1621 gggtgacagt ccgtaaagtt cctgcctcct cggacttatc cgttgccgcc atctctgcta
     1681 tgttcgcgga cggagcctca ccggtactgg tttatcagta tgccgcatct ggagtccaag
     1741 ccaacaacaa actgttgtat gatctttcgg cgatgcgcgc tgatataggt gacatgagaa
     1801 agtacgccgt cctcgtgtat tcaaaagacg atgcgctcga gacggacgag ctagtacttc
     1861 atgttgacat cgagcaccaa cgcattccca catctggagt gctcccagtc tgattccgtg
     1921 ttcccagaat cctccctccg atctctgtgg cgggacgtga gttggcagtt ctgctataaa
     1981 ctgtctgaag tcactaaacg ttttttacgg tgaacgggtt gtccatccag cttacggcta
     2041 aaatggtcag tcgtggagaa atccacgcca gcagatttac aaatctctga ggcgcctttg
     2101 aaaccatctc ctaggtttct tcggaaggac ttcggtccgt gtacctctag cacaacgtgc
     2161 tagtttcagg gtacgggtgc ccccccactt tcgtgggggc ctccaaaagg agacca
//