From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: C.fulvum CfT-1 LTR-retrotransposon encoding homologues to
Date: 15 Aug 92 10:01:23 GMT
Distribution: bionet
Checksum: 62933    14

LOCUS       CLST1RTPOS   7396 bp ds-DNA             PLN       15-AUG-1992
DEFINITION  C.fulvum CfT-1 LTR-retrotransposon encoding homologues to
            retroviral gag, pol, and env genes
ACCESSION   Z11866
KEYWORDS    env gene; gag gene; pol gene; retrotransposon;
            reverse transcriptase.
SOURCE      Cladosporium fulvum DNA.
  ORGANISM  Cladosporium fulvum
            Eukaryota; Fungi; Eumycota; Ascomycotina; Plectomycetes;
            Eurotiales; Amorphothecaceae.
REFERENCE   1  (bases 1 to 7396)
  AUTHORS   Oliver,R.P.
  JOURNAL   Unpublished (1992)
  STANDARD  full automatic
REFERENCE   2  (bases 1 to 7396)
  AUTHORS   McHale,M.T., Roberts,I.N., Noble,S.M., Beaumont,C., Whitehead,M.P.,
            Seth,D. and Oliver,R.P.
  TITLE     CfT-1, an LTR-retrotransposon in Cladosporium fulvum, a fungal
            pathogen of tomato.
  JOURNAL   Mol. Gen. Genet. 233, 337-347 (1992)
  STANDARD  full automatic
COMMENT     *source: strain=Race 4; *source: clone=pNOM712.3; *source:
            is_macronuclear=N; *source: is_proviral=N; *source: is_germline=N;
            From EMBL    entry CFT1RTPOS;  dated 25-MAR-1992.
FEATURES             Location/Qualifiers
     LTR             114..540
     transposon      114..7083
                     /standard_name="CfT-1 LTR-retrotransposon"
     CDS             639..2558
                     /product="putative gag homolgue"
                     /gene="homologue to retroviral gag genes"
                     /codon_start=1
                     /translation="MLSMPWLLIQATNPQGWQPEFFYGDRVKFDTWVSQMDMYFLFNS
                     MTENLKPIFATTFLRGRAQHWVKPFLRKYLDSNGEDNADGVFKSYNHLKHAMKSVFGV
                     SNEIATAVRVIQHLTQKTSTAEYAAKFQEYAQLTDWDDEALQVMYRRGLKEHVKDELM
                     RDGRKIDGLGDLVQVTIDLDDKLYERAMERRYDSKVSGKAGYTPGYDNRNRGFNDNYN
                     KPKDKPYYGPQPMELDVTEKGRKIRNSKGNRRPPSSRETRTCYGCGKPGHIARDCRGK
                     NMVRREQFNMMQRRTSKSESSVESLGDIDYTRRVEERASNGSTEPLLDPSQGRGGCHG
                     QQMVVIPFELQNQPRQFNMMARRVDYEIESESRNGHGSLHWRFCYQDSCQVHYSAKSG
                     AGYWPQQPRGTLGATHRQDATLQEVDIDESCFDDDGSDKENQDPGWNGSWSPEPQEES
                     QETTGLDTIEEDQDPEESSEEDSSEGEESDTDDDNEQMTFTVDAPKKLYDMIIHLQRR
                     HEEFLPRIGGRRMLHSIEFDKTLDTLRGMAWGYPLMETTENLATAVTERPPIGSRMIG
                     TGYLTPSGTFVSNELRNMVQHARALYSETQKIQERHRVQMWTQKGSRQVQAEASRHEA
                     RRSTYEQGKGSTPQE"
     CDS             2327..5464
                     /partial
                     /product="Reverse Transcriptase"
                     /gene="homologue of retroviral POL genes"
                     /codon_start=1
                     /translation="NDRYRIPHTVRNIRIKRIAQHGAARTRTLLRNAEDPGTSSSTDV
                     DTERLAPGSSGGLETRSTTFHIRTGKRINSPGMSDRRELCNTEKAQASPTTTVFRTKI
                     IVNGHKTDAMIDSGASGNFASESFVTRNRIATCKKKEGYELIAVDGSSLPSVERETIP
                     LPLAIQRHHEEITLDVTDMASHDIVLGMPWLRKHNPVIDWRRGVLTFRECECVIDIQP
                     AQWQRSLADEARKQLNRIQLAPTRRTEEPPSTGTDTGVGPPGHEVTGSDGSNAPSKDT
                     NISELSIPKEYRKWSRLFEEERGKDALPKHQPWDHKINIQPGKEPPWGPLYQMSEKEL
                     QTLREWLKEKLAKGWIRRSTSSAGTPCMFVPKANGKLRLVQDYRKLNEITIKNRYPLP
                     NIEEAQDRLTGSDWYTKIDLRDAFYAIRMAEGEEWKTAFRTRYGLYEFLVMPMGLTNA
                     PASCQDLVNETLRDLLDVCVVAYMDDILVYTKGSLQEHTKQVQDVFERLTKSGFKTAP
                     EKCEFHKKEVKFLGFIISTTGITIDPAKTQSIREWPEPKTVKDVQSFLGLANYNRKFI
                     KDYSKTAAPMTMLTRKDVNWKWGKEQTEAFKRLKEQCASAPTLRLFDGSKEVHIETDA
                     SDMAIGACLTQTHDGKRHPVAYYSRKMTTAEQNYDIHDKELLAIVAAMQHWRVYVEGP
                     PKLTILSDHKNLTYFTTTKELTRRQARWSELLGQYKFEIKYTPGTENGPADALSRRSD
                     YMEGKEPVQHKILKTNPDGSLSANTREFNNIVRILSDKEEQFPISQGKYQVPKDREEE
                     CIRQHHDEPTYGHPGTSKTVDLIQRSFSFPQMRLKVLRYIKKCVHCQQNKAARHAKYG
                     HLQFRTPPTKPWDEVTMDFITKLPRSKDRVTGQAYDMILVMVDRLTKYAHFIPASEIY
                     TAEQLGYLVLDRLIRYHGFPEVFITDRDKLFTSNYWKTLMGTIGIKHKLSTAYHPETD
                     GQTERTNQTLEQYLRHYINYAQDNWVSLLPMAQIALNNHKSETTSTTPFMRTLARTLT
                     YPEHLDPTHRPREQS"
                     /partial
     CDS             5560..6057
                     /product="env homologue"
                     /codon_start=1
                     /translation="MAPLLKEGDKVYLLTKNLKTRRQTKKLDHVKVGPFFIDKVVGPV
                     NYRLRLPPDAKIHPVFHISKLEPADAETPCQESFHFEPEAENEFEVEKILDKKGQRYL
                     VKWKGYDESENTWEPRINLANCYQLLRQFQKWRQDSRKQEAQERRASPDQTRSRPKYP
                     HARTK"
     LTR             6657..7083
BASE COUNT     2302 a   1913 c   1794 g   1387 t
ORIGIN
        1 taagagacgg taatagacta tagtaaggag cttaagatat cggtatacgc actagataaa
       61 caatagctag ctatataccc ttatatattg ttacccgtaa taatataata tagtgttacg
      121 gatcggacac gaccgaagga gcgtcagcca atcaatagcc cgcactaatg acaggcgcgg
      181 cccacagcta ggcgggcaca gccgctgcag agtgcctgga gtgcctggag tgcctggagt
      241 gcctacggac ttaggcacag taggcacgat aggcacggta ggcacaggaa aggaatggaa
      301 tttcctttgt atttaggaac gcatcgtacc cttatggttc gaggcgttca actcactgtt
      361 caatatcact gtttggaata caccacaacc caacctctgc ctcactgctg cttggtcttt
      421 acaagacgag acagctactg cttcatcact ctccctcacc ttccatcggc cacgagacaa
      481 aacccgattg agcttggtct tctgatcttg tgatatcatt aggttatacc aaacctaaca
      541 gctttgaacg ccctcaacga tgggagatcg acagagtgac cggggaacac ccgcccccag
      601 tgaagcaagc agagcccgac gacctcagac cgcgaacgat gctatcaatg ccttggctac
      661 tcatacaggc aacgaatcct caaggttggc aaccagagtt cttctatggc gaccgagtca
      721 agttcgacac ttgggtctct cagatggata tgtacttctt gttcaactcc atgactgaga
      781 acctcaagcc tatctttgcc accaccttct tgagaggacg agcacagcat tgggtcaaac
      841 cattccttag gaaatacctg gatagcaacg gagaagacaa tgctgacgga gtcttcaagt
      901 cttacaacca tctcaagcat gctatgaaga gcgtctttgg tgtctcgaac gagattgcca
      961 ctgccgttcg tgttattcag cacttgactc agaagacttc cacagccgaa tatgctgcca
     1021 agttccagga atacgcgcaa ctcaccgatt gggacgacga agcacttcaa gtcatgtatc
     1081 gaagaggact gaaggagcat gtcaaagacg agttgatgag ggacggtcgg aagatcgatg
     1141 gcttaggcga cctagtccaa gtcacgatcg atcttgacga caagctctac gagagagcta
     1201 tggaacgacg atacgactcc aaggtatctg gaaaggccgg atacacgcca ggctacgaca
     1261 accgtaacag aggtttcaac gacaactaca acaaacccaa ggacaagccg tactacggac
     1321 cacagccaat ggagctcgac gttaccgaga aaggtcgcaa gatcaggaac agcaagggga
     1381 acagaagacc cccgagttca agagaaacac gaacttgcta tggatgcggc aaacctggcc
     1441 acatagcaag ggactgccgc ggtaagaata tggtgcgccg cgaacagttc aacatgatgc
     1501 aacgacgaac tagtaaatct gagagcagtg ttgagtctct gggagacatc gactatactc
     1561 ggagagtgga ggagagagct agcaatggaa gcacggagcc tctcctggac ccctcacaag
     1621 gacgaggagg atgccatggg cagcaaatgg tggtcattcc attcgagctg cagaaccagc
     1681 cacgacagtt caacatgatg gcacgaagag tcgactacga aatcgagtcc gaatctcgaa
     1741 atggtcacgg aagccttcat tggcgattct gttaccaaga ctcgtgtcag gttcactact
     1801 ccgcgaaatc aggagcaggg tattggcctc agcaaccgcg aggaaccctg ggagcaacac
     1861 ataggcaaga cgccacgctc caagaagtgg acatcgacga atcctgcttc gacgacgatg
     1921 gaagcgacaa agaaaatcag gacccaggat ggaacggatc gtggtcaccg gaaccacagg
     1981 aagaaagtca agaaaccacc gggctggata ccatcgagga agaccaggat ccggaagaat
     2041 caagcgaaga agattcctcc gaaggagaag agagcgacac tgacgacgac aacgaacaaa
     2101 tgaccttcac cgtagacgca ccgaagaagc tctacgacat gataattcac ctgcaacgaa
     2161 ggcatgaaga attcctaccg aggataggcg gacgacgaat gctacactcc attgagtttg
     2221 acaagacact cgacacccta cgaggcatgg cctggggata cccactcatg gaaacgaccg
     2281 aaaacctagc aactgctgtc acagagcgac cgccgatagg aagtagaatg ataggtaccg
     2341 gatacctcac accgtcagga acattcgtat caaacgaatt gcgcaacatg gtgcagcacg
     2401 cacgcgcact ctactcagaa acgcagaaga tccaggaacg tcatcgagta cagatgtgga
     2461 cacagaaagg ctcgcgccag gttcaagcgg aggcctcgag acacgaagca cgacgttcca
     2521 catacgaaca gggaaaagga tcaactcccc aggaatgagc gaccgaaggg agttatgcaa
     2581 cacagaaaag gctcaagcat caccaacgac aacagtgttt cgaaccaaga ttatcgtcaa
     2641 cgggcacaag acagatgcca tgatagattc cggagcgagc gggaattttg cctccgaatc
     2701 atttgttaca agaaacagga tcgctacctg taagaagaaa gagggttatg aattgatcgc
     2761 ggtagacgga tcatccttac ccagcgtgga gcgcgagacg ataccgctac cacttgctat
     2821 ccaacggcac cacgaggaga ttaccttgga tgttactgat atggccagtc atgacatcgt
     2881 actaggtatg ccttggttga gaaagcacaa cccagtaatc gactggagaa gaggagtact
     2941 cacatttagg gaatgcgaat gcgttatcga cattcagcct gcgcagtggc agcgttcact
     3001 ggcagatgag gcaaggaaac agctcaacag gatacagctt gcgccgacta gaaggacaga
     3061 agaaccacct tcgaccggga cagacactgg cgtggggccg ccgggtcacg aagtcactgg
     3121 aagtgatgga agtaacgcac catcgaagga taccaacatc tcagagttga gtattcccaa
     3181 ggagtatcgc aagtggtcgc gactctttga agaggaaaga ggcaaggacg ccttacctaa
     3241 gcaccaacca tgggatcaca agataaacat tcagccaggg aaagagcctc catggggacc
     3301 cctatatcaa atgtctgaga aagagctaca gaccctacga gaatggctga aggagaagct
     3361 agccaaagga tggatacgac gatccacctc aagtgcagga actccatgca tgttcgttcc
     3421 aaaagcaaac gggaaactac gactcgtaca agactaccga aagttgaacg agatcacgat
     3481 caagaaccga tatccgctac ccaacatcga agaagcacaa gacagattaa ccggatcaga
     3541 ctggtacacg aagattgacc tacgagacgc cttctatgct atccgaatgg cagaaggaga
     3601 agaatggaaa accgctttca ggacaagata cggactctac gaattcttgg tcatgccaat
     3661 gggattgacc aacgcacccg catcctgcca ggaccttgtc aacgaaacac ttagagacct
     3721 actcgacgtg tgcgtcgttg cttacatgga cgacatactg gtctacacaa aaggatccct
     3781 ccaggaacat accaagcaag ttcaagatgt gttcgaacga ctcacgaagt ccggattcaa
     3841 gacagcaccc gagaaatgcg aattccacaa gaaagaagtc aagtttttag gctttatcat
     3901 cagtacaaca gggataacga tcgaccctgc aaagacacag tcaatcagag aatggccaga
     3961 accgaagaca gtcaaggatg tacagtcatt ccttggactc gccaactaca accggaaatt
     4021 cattaaggac tattcaaaga cagcagcacc aatgacgatg cttacaagaa aagacgtcaa
     4081 ctggaaatgg ggaaaagaac agaccgaagc gttcaaaaga ctcaaggaac agtgcgcttc
     4141 agccccaacg cttcgactat tcgatggtag caaggaagtc cacatcgaga ccgacgcgtc
     4201 tgatatggca ataggcgcat gtctaacaca gacacacgat gggaaaagac acccagtggc
     4261 ctattattcc cggaaaatga ccacagcgga acagaactac gacatccatg acaaggagct
     4321 tctagccatt gttgccgcca tgcaacattg gagagtgtac gtcgagggcc caccgaagtt
     4381 aacgattctt tcagaccaca agaatctcac gtacttcacg acgacgaagg aacttacccg
     4441 aagacaagcc cgctggtcgg agctgcttgg gcagtacaag ttcgaaatca aatacactcc
     4501 aggaacagag aacggcccgg cagatgcgct gagccgaaga agcgattaca tggaaggaaa
     4561 agaaccagtg caacacaaaa tacttaagac aaaccccgac ggaagtctta gtgccaacac
     4621 gagagagttc aacaacattg tacgaatcct aagcgacaag gaagaacagt tccctatatc
     4681 gcaaggaaag taccaagtac caaaggatcg agaagaagaa tgcatacgac aacatcacga
     4741 cgagccaaca tacggacatc ctggaacttc aaagacagtc gacctaatac agcgcagctt
     4801 ctcattccca cagatgagac ttaaggtgct acgctacatc aagaaatgcg tacactgcca
     4861 acaaaacaaa gctgcacggc acgcgaaata cggtcaccta cagttcagga caccaccaac
     4921 gaaaccatgg gacgaggtta cgatggactt cattacgaaa ctcccgaggt caaaggatcg
     4981 agtcacagga caagcctatg acatgatact agtcatggtc gacagactca caaaatatgc
     5041 acacttcatt cctgcatcag aaatatacac tgcagagcag ctcggatacc tcgtactgga
     5101 cagattgatc cgatatcacg gattcccgga agtattcatt acagacagag acaagctctt
     5161 cacatcaaac tactggaaga cgctcatggg aacgattgga atcaagcaca agttgtcaac
     5221 agcataccat ccagagacgg atgggcaaac ggaaagaacg aaccagacac tcgagcaata
     5281 cctacggcac tacatcaact acgcacaaga caactgggtt tcattactgc caatggcgca
     5341 gatcgcactg aacaaccaca aatcagagac aacttcgacg acgccattta tgcgaacttt
     5401 ggcaaggacc ctaacctatc cggaacacct ggatcccacc cacaggccga gagagcaatc
     5461 gtgacgacgg aaactctcaa ggaagtgcac aaagaagcac gcaaggcgat cgaagatgca
     5521 caacaaagac tgtctcaacg acggcaagac gagagaaaaa tggcacctct gctaaaagag
     5581 ggggataagg tctatctcct cacaaaaaac ctgaagacaa gaagacagac caagaaactg
     5641 gatcacgtta aggtcggacc attttttatc gacaaagtcg taggaccagt caactaccga
     5701 ctacgactac cacctgatgc gaaaatccac ccggtcttcc atatctccaa gttggaacca
     5761 gcggacgccg aaacaccttg ccaggagagc ttccatttcg agccggaagc agaaaacgaa
     5821 tttgaagtcg aaaaaatcct agacaagaag ggtcagcgat accttgtcaa atggaaagga
     5881 tacgacgaat cagaaaatac ctgggaacca agaattaatc tggcgaactg ctaccagctt
     5941 ctgcgacagt tccagaagtg gcgccaagat tcccggaaac aagaagctca ggaacggaga
     6001 gcaagtccgg atcagaccag aagtcgtccg aaataccctc acgcaaggac caagtaggag
     6061 gggaaagaga cagcgaggga cctgggacca cgtcttcgtc cggaagctcc atgagggcag
     6121 cctcctccac tgcgatcgcc tcggtctctc gacgctctag aagctccagc tccctttgga
     6181 gacgggcctt cttctcccaa gcggcggcct cttcctcctg tatcctccgg cgcacgacct
     6241 cttcttcctg tatccttcga agcgaagcct cgtatgcttc attaagctcc cgcatctttc
     6301 gacgatgctc cgacaccttt ttctcgagag cctcgcgctg acggcgcaga cgcgaccatt
     6361 ccgcctctgt aaccttgaca ttacagtcgc gacgattttc ctttgtacag acaccacacc
     6421 gaccagaccc gacatggaca cgacagacga cttcgtctcg cgacagtgga gacagggacg
     6481 aaccatgatt tcgcccaggg cttcgatttt ctcggattga cgaatgcgac gttcggtgct
     6541 ggaaggtttc agcttgggca tgttgaagga aagaagagag ccatgacgac cgctcaaccc
     6601 aaggaaacct cgattattca taagctcggg acgagctaag ctagagaggg gatggtgtta
     6661 cggatcggac acgaccgaag gagcgtcagc caatcaatag cccgcactaa tgacaggcgc
     6721 ggcccacagc taggcgggca cagccgctgc agagtgcctg gagtgcctgg agtgcctgga
     6781 gtgcctacgg acttaggcac agtaggcacg ataggcacgg taggcacagg aaaggaatgg
     6841 aatttccttt gtatttagga acgcatcgta cccttatggt tcgaggcgtt caactcactg
     6901 ttcaatatca ctgtttggaa tacaccacaa cccaacctct gcctcactgc tgcttggtct
     6961 ttacaagacg agacagctac tgcttcatca ctctccctca ccttccatcg gccacgagac
     7021 aaaacccgat tgagcttggt cttctgatct tgtgatatca ttaggttata ccaaacctaa
     7081 catatagaaa ggctcgaggc cttatagatt ctacttctac ctctctcttt cttgactaga
     7141 aatttatacg caaatacata atacccctaa tccctttgac gtaaagccga cgactaatac
     7201 taggagatag aacggctact acacggcaga ttatatacgc ggcccttata gacgtagtta
     7261 tcggcgatta ttacgagcaa atgttatact acgtcaccga cctcgaatat aatatcgtct
     7321 ttagcctacc gtagcttata gcgtataacc taaacatctt ctaggagata ggcgaggtgg
     7381 catttagatc tgcagc
//