From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Cys-rich domain protein, reverse transcriptase homolog {LINE
Date: 29 Dec 92 19:59:56 GMT
Distribution: bionet
Checksum: 22810 11

LOCUS       S116385      5007 bp    DNA             NLM       10-DEC-1992
DEFINITION  Cys-rich domain protein, reverse transcriptase homolog {LINE
            retrotransposon} [Aedes aegypti, Pacific, retrotransposon Juan-A1,
            Transposon, 5007 nt]
ACCESSION   S46757 M95171
KEYWORDS    .
SOURCE      Aedes aegypti Pacific retrotransposon Juan-A1
  ORGANISM  Aedes aegypti
            Unclassified.
REFERENCE   1  (bases 1 to 5007)
  AUTHORS   Mouches,C., Bensaadi,N. and Salvado,J.C.
  TITLE     Characterization of a LINE retroposon dispersed in the genome of
            three non-sibling Aedes mosquito species.
  JOURNAL   Gene 120, 183-190 (1992)
  STANDARD  full automatic
COMMENT     This entry [NCBI gibbsq 116385] was created by the journal scanning
            component of NCBI/GenBank at the National Library of Medicine.
            This sequence comes from Fig. 2.  The authors begin their numbering
            at -120.  Zero is not present in the numbering.
FEATURES             Location/Qualifiers
     misc_feature    121..4847
                     /note="Juan-A1 element"
     CDS             456..1958
                     /note="Author indicates first Met is at postion 342.
                     Description: Cys-rich domain protein;  For the protein
                     sequence (NCBI gibbsq 116386):  Method: conceptual
                     translation supplied by author.  This sequence comes from
                     Fig. 2."
                     /codon_start=1
                     /translation="LNMVSTTNKRKGESLNSLLPSKKVGFKTVTTRGKNGRKDVSPEC
                     ELSSKGEMNNCIEMSNQFDALDKFSEHQIEAASSSGSLIQVRKQRVPPIVVSCSEFGG
                     FRQEILNSIRGIKVSFQIAKKGDCRVLPETLKDRELLLKHLEEKKHNFFTYDDKTERL
                     FKVVLKGLSSDYKSPEEIKNGIIDLLGFSPVQVIIMKKRTQSGIVRKGLSQEFYLVHF
                     NKKELNNIKALEKAKLLFDVRVTWEHFQKPGGNYQNPTQCRRCQKWGHGTKNCRMDAK
                     CMICGGSSHTKDVCPVKEDTTKFICCNCGANHKSNFWNCPSRKKVIEARARQMKDNIR
                     YDNGRFRNLPGRVSNNAHFSVNDRLIMNHTHQEDHNHAHSQTNFIPSGSRSNLSTSNV
                     STHGKSFADIVAGNSNSSPVRSMGTHSTCFKSNGKNPTATGNSASSSAENSNGKSHDM
                     SASDFNFLTEQLNLMIDAMFKATTMTEAVQVGVKFTNQIVIGLRFSNGSK"
     CDS             1962..4610
                     /partial
                     /note="Description: reverse transcriptase homolog;  For
                     the protein sequence (NCBI gibbsq 116387):  Method:
                     conceptual translation supplied by author.  This sequence
                     comes from Fig. 2."
                     /codon_start=1
                     /translation="FKYFKLNARSLNGKEDELFNFLTVNNVHIAVITETYLKPGSKLK
                     RDPNFFVYRNDRLDGACGGVAIIIHRRIKHQLFSSFETKVFETLGVSVETQFGKYTFI
                     AAYLPFQCSGQQVNLLQTDLRKLTRNKSKFFVIGDFNAKHRSWNNSQSNSNGRILFDE
                     CSSGYFSIQYPDSPTCFSSSRNPSTIDLVLTDSSHLCSQLITHADFDSDHVPVTFQIS
                     QEAILNPISSTFNYLRADWNIYKTYVDSNLDVNISLETKLDIDNALETLTNSIVEARS
                     IAIPKCEVKFESVIIDDDLKLLIRLKNVRRRQFQATRDPAMKIIWQDLQKEIKKRFAQ
                     LRNKNFENKISQLDPGSKPFWKLSKILKKPQKPIPALKEENKLLLTNCEKAQKLAMQF
                     ESAHNFNLGLTSPIENQVTQEFENILNQENVFENAWETYLEEVRTIIKKFKNMKAPGD
                     DGIFYILIKKLPESSLSFLVDIFNKCFQLAYFPDKWKNAKVVPILKPDKNPAEASSYR
                     PISLLSSISKLFEKVILNRMMAHINENSIFANEQFGFRHGHSTTHQLLRVTNLTRANK
                     SEGYSTGLALLDIEKAFDSVWHEGLIVKLKNFNFPTYIVRIIQSYLSNRTLQVNYQNS
                     RSERLPVRAGVPQGSILGPILYNIFTSDLPELPQGCQKSLFADDTGLSAKGRSLRVIC
                     SRLQKSLDIFSSYLQKWEISPNASKTQLIIFPHKPKALYLKPSSRHVVTMRGVPINWS
                     DEVKYLGLMLDKNLTFKNHIEGIQAKCNKYIKCLYPLINRKSKLCLKNKLLIFKQIFR
                     PAMLYAVPIWTSCCNTRKKALQRIQNKILKMILRLPPWYSTNELHRISMLKHWNKCQI
                     QSLIISGKNRYNLLLPRLMRYMFRLS"
BASE COUNT     1658 a    931 c    873 g   1545 t
ORIGIN      
        1 aaggaagaat tatgaacctt tttacataaa tcgaaaacta tcattcacag gaacacagct
       61 acctgtaaaa atcagatcac gcttacgcct tgaaaatgat gctactaaag gaacaaatat
      121 ccagtgcgca tcgtaccttc gtgctgtgcg tacacgaatt ctctctgctc ttggaagttt
      181 tcttaaaaac tacctaaagc aataaaacag tacttttcag tgctacaaaa acagtacttt
      241 tcagtgctaa aattaaaaac ggtacttttc agtgctacta aaacagtact tttcagtact
      301 attttttcta ctattgatcc ctttacgatc cttgtttgga cccgtgcctt cgatttttcg
      361 ttggacccgt tggcgaaagc tagcggtggt aatccttctt ggacaccgtc ttgggaaaaa
      421 acctttcgaa ggtcacgtct tctttcgttt attaattaaa catggtatca acaactaaca
      481 aaaggaaggg tgaatctctg aattcactac ttccttccaa aaaagtgggt tttaaaactg
      541 tcactacacg tggcaagaat ggaagaaagg acgtttctcc ggaatgcgaa ctttcttcca
      601 agggtgaaat gaataattgt atcgaaatga gcaatcagtt cgatgctcta gacaaatttt
      661 ccgaacacca aatcgaagca gcctctagct caggctcttt gattcaagtg aggaagcaaa
      721 gagtgccgcc tatcgtggtc agttgttccg aatttggggg atttaggcag gagatcttaa
      781 actccattag gggaatcaag gtttccttcc aaatcgcaaa gaaaggagac tgtcgcgttt
      841 tgccggaaac tcttaaagat cgtgagcttc ttctcaaaca tcttgaagag aagaagcaca
      901 atttttttac ttatgacgac aaaactgaac gtttgttcaa agttgtcttg aaaggtctct
      961 caagtgacta taaatcacct gaagagatca aaaatggaat aattgattta cttggatttt
     1021 ccccagtcca agtaatcatt atgaaaaaga gaacccaatc tggcattgtt cggaaagggc
     1081 tttctcaaga attttattta gttcacttta acaaaaaaga actaaataat attaaagctt
     1141 tagaaaaagc aaaacttttg tttgatgtcc gtgtgacatg ggaacatttc cagaaacctg
     1201 gaggaaatta ccagaacccc actcagtgcc gtcggtgcca aaagtggggt catggtacaa
     1261 aaaattgtcg catggatgct aaatgcatga tttgcggagg ttcttctcac accaaagacg
     1321 tctgtccagt gaaggaagat accaccaaat tcatatgttg taattgcggg gctaaccata
     1381 agtccaattt ttggaattgt ccttcacgca aaaaagtcat tgaggctcgt gccaggcaga
     1441 tgaaagataa tatccgttac gataacggtc gtttccggaa tttgcctggt agagtatcga
     1501 acaatgctca tttttcagtt aacgatcgct tgatcatgaa tcatacccat caggaagatc
     1561 ataatcatgc tcattcacaa actaatttta ttccgtcggg tagccgttcg aatctttcta
     1621 cttcgaatgt atctacccac ggtaaatcct ttgccgatat cgtagcagga aattcgaact
     1681 cctcccctgt tcgatccatg ggtacccatt ctacttgttt caaatcaaat ggaaaaaacc
     1741 ctaccgccac aggtaactcc gcttcttcgt ctgccgaaaa ttccaatggg aaatcacatg
     1801 acatgtctgc ctctgatttt aattttctaa ctgaacaatt gaatctaatg attgatgcaa
     1861 tgttcaaagc caccactatg actgaagcag tccaagtagg tgtaaaattt acaaatcaaa
     1921 ttgttattgg attacgtttt tctaatggat ccaaataata atttaaatat tttaaattga
     1981 atgctcgttc tctgaatggt aaagaggacg agctgtttaa ttttcttacg gttaataacg
     2041 tgcatatagc agttattacc gaaacgtatt taaaacctgg atctaaactc aaaagagatc
     2101 ctaacttttt tgtttatcgt aatgatcgac ttgatggggc atgtggggga gttgcaatca
     2161 tcattcatag gcgtataaaa catcaactgt tttcatcatt tgaaactaaa gtttttgaaa
     2221 ctttaggtgt ttctgttgaa acacagtttg gtaaatatac tttcatagct gcctatttgc
     2281 cttttcaatg ctctgggcag caagttaatt tgctccaaac tgacttgcgt aaattgactc
     2341 gcaataagtc aaaatttttt gtcattggtg actttaatgc caaacatcgg tcatggaata
     2401 attctcaaag taattccaac ggcagaattt tatttgatga gtgctcttca ggatatttct
     2461 caattcaata ccctgatagc cccacatgtt tttcctcttc tagaaatcca tctacgattg
     2521 atttggtctt aaccgactct agtcatcttt gtagccaact gattactcat gctgattttg
     2581 attctgatca tgtccctgtt acatttcaaa tatcccaaga agcgattctc aatcctatca
     2641 gctccacttt caattattta cgagccgact ggaatatata taaaacgtat gttgactcca
     2701 atcttgatgt taacatttct ttagaaacta aacttgatat tgacaatgct cttgaaactt
     2761 taacaaattc cattgttgaa gcccggagca ttgcaattcc aaaatgtgaa gtaaaatttg
     2821 aatccgtgat tatagacgat gatcttaaac tcttgatccg tcttaaaaac gtgaggagaa
     2881 ggcaatttca agccactcgc gatcctgcta tgaaaattat atggcaggat ttgcagaaag
     2941 aaatcaagaa acgttttgct caattaagaa acaaaaattt tgaaaataaa atttctcaat
     3001 tggaccctgg ctctaagccc ttttggaaat tatcgaaaat cttgaaaaaa cctcagaagc
     3061 caataccggc attgaaagag gaaaacaaat tattactaac taattgcgaa aaagctcaaa
     3121 aacttgctat gcagtttgaa agtgcgcaca attttaattt aggacttact agtccaattg
     3181 aaaatcaagt tactcaggag ttcgaaaata ttctaaatca agagaacgtt ttcgaaaatg
     3241 cctgggagac ctatttggaa gaagtgagaa ctattattaa aaaattcaaa aacatgaaag
     3301 ctcctggcga tgatggaatt ttctacatcc tcatcaagaa acttccagaa agtagcttat
     3361 catttttagt tgatatattt aacaaatgtt ttcaattagc atattttcct gacaaatgga
     3421 aaaatgctaa ggttgttcca attttaaaac cagacaaaaa tcctgcagaa gcttctagct
     3481 atcgtccaat cagtttgctt tcctccatca gtaaactttt tgaaaaggtt attttgaaca
     3541 gaatgatggc ccacatcaac gaaaattcaa tttttgccaa tgaacagttc ggattccgcc
     3601 atggacattc gaccactcat caacttttac gtgtaacaaa tttgacccgt gccaacaaat
     3661 ctgaaggcta ttctactggt cttgctcttc tagacataga aaaagcattc gacagtgttt
     3721 ggcatgaagg tttgattgta aaattaaaaa acttcaattt tccaacatac attgttagaa
     3781 taattcaaag ttatctgtca aatcgtacac ttcaggttaa ttatcagaac tccagatctg
     3841 aaagacttcc tgtaagagct ggtgttcctc aaggcagcat tttgggacca atattataca
     3901 atattttcac atctgactta cctgagttac ctcagggatg tcaaaaatct ttgtttgcgg
     3961 atgacacagg cctctccgcc aaaggacgaa gcctgcgtgt catctgtagt cgattgcaaa
     4021 aaagtttgga tattttttct tcatacttgc aaaaatggga gatttctcct aatgcttcca
     4081 aaactcaact aataatattc ccacataaac caaaagctct ttatttgaaa ccttcaagta
     4141 gacatgttgt cacgatgaga ggggttccaa taaattggtc agatgaagtt aagtatctag
     4201 ggctcatgct agataagaat ttaactttca aaaatcacat tgagggcatt caagccaaat
     4261 gtaataaata tataaaatgt ctttatcccc ttattaatag aaaatcaaaa ctttgtctta
     4321 agaacaagct tttgatattc aaacaaattt tcaggccagc catgttgtat gctgtaccaa
     4381 tatggactag ctgttgtaat accaggaaga aagctctgca gagaattcaa aataaaattt
     4441 tgaaaatgat tctgaggctt cctccctggt atagtaccaa tgagttacat agaatatcaa
     4501 tgttgaaaca ttggaacaaa tgtcaaatac aatcattaat aatttcaggc aaaaatcgtt
     4561 acaatcttct attgccacga ttaatgcgtt atatgtttag gttaagttag gttaagtata
     4621 ttaaaaacgt tttttttctc ttataagcag gtgaaatcaa ctcacctgta aaaaaactga
     4681 actgctacgg caaatgaaat gtaatatgtt gttaacaaaa tgttaattta atcttaaatt
     4741 tgttttacca aattaggatg atagtgttgt caaataacac agaacaccta gatataagaa
     4801 atgaatgtaa tgttttttaa agaaataaaa aaaaaaataa aaaaaaagga acaaatatga
     4861 aaagcggcaa gtgcaggcac gtgtaagact atagtggatc gcgatataaa acacaaaact
     4921 atgggtcctc tagttttagt atttctttga tttttcataa gagcttactt gcgtagttcg
     4981 atttttgttc atcgttgcat tattgtt
//