From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Garlic yellow streak virus gene for protease, RNA polymerase and
Date: 12 Sep 92 10:02:19 GMT
Distribution: bionet
Checksum: 28597     7

LOCUS       GPVPRC       3305 bp ss-RNA             VRL       12-SEP-1992
DEFINITION  Garlic yellow streak virus gene for protease, RNA polymerase and
            coat protein, partial sequence.
ACCESSION   D11118
KEYWORDS    RNA polymerase; coat protein; protease.
SOURCE      Garlic yellow streak virus cDNA to genomic RNA.
  ORGANISM  Garlic yellow streak virus
            Viridae; ss-RNA nonenveloped viruses; Rod-shaped ss-RNA viruses.
REFERENCE   1  (bases 1 to 3305)
  AUTHORS   Sumi,S.-.
  JOURNAL   Unpublished (1992)
  STANDARD  full staff_review
COMMENT     These data kindly submitted in computer readable form by:
            Sin-ichiro Sumi
            Institute for Biotechnology Research
            Wakunaga Pharmaceutical Co.
            1624 Shimokotachi, Koda-cho
            Takata-Gun, Hiroshima 729-64
            Japan
            Phone:  082645-2331
            Email:  tmiyake@niguts.ddbj.nig.ac.jp
            Fax:    082645-4351
FEATURES             Location/Qualifiers
     CDS             <1..2761
                     /product="polyprotein precursor"
                     /codon_start=2
                     /translation="SATSATAGTANKNFFKHWISTKHGQCGNPLVSVTDGSIVGIHSM
                     ASTVSSMNMYAGFPENFVEDYLSNDMLEWTKGRKLNADRSCWDGITLVNSKAEGLFKM
                     AKDIFTLDDGNWEFQSGNKNWMYDKLERNLKAVGRTRGNLVTKHSVKGKCMLFQTYLS
                     VEPGEAEYFTPLMGAYTKSALNKEAYIKDLSKYSGEISVGNVNCDIFERAFGKVVALM
                     ESKGFHKCAYVTNEQDILSSLNMKAAVGALYSGKKREYFADFSDQDKYDIVRESCKRL
                     FLGKMGVWNGSLKAELRPIEKVMANKTRSFTAAPLDTLLGGKVCVDDFNNQFYSRHFD
                     LPWTVGMSKFRKGWDTLLRKLPENWIYCDADGSQFDSSLSPYLINADLKLRLHFMEDW
                     DVGETMLKNLYTEIVYTPIATPDGTIVKKFKGNNSGQPSTVVDNSLMVVFAMYYAMEM
                     SNVNNIHDKCVFFVNGDDLIIAVEPGSETFLDSLQNLFHQLGLNYNFDNRTRNKEELC
                     FMSHMGILQEDIYIPKLDKERIVSILEWDRAQQPEHRLEALCAAMIEAWGYPELLDRI
                     RKFYYWVLEQAPYNELSTLGKAPFISEAALRNLYTDCEATEAELARYLELYDSDAPVE
                     DTFVFQANDELDAGMQTSKKQKDGNDKSIEQRDPASSQVSSLGKKDGEGGSGMSRNKD
                     RDVNVGTTGTFSVPRIKQIPQKGISIPMDGGKSILNLDHLLQYKPNQLNISNTRATVA
                     QFKTWMERVQEDYGVTKGEMGIILNGLMVWCIENGTSPNINGTWTMMDGDEQVAYPLR
                     PIVEHAKPTLRQIKAHFSALAEAYIEMRNSEQAYMPRYGLQRNLTDMGLARYAFDFYE
                     VTSRTPVRAREAHAQMKAAALRNSRPRLFGLDGNVTTTDEDTERHTAHVVNARMHHLD
                     GAHMQ"
     mat_peptide     <1..352
                     /product="protease"
                     /codon_start=2
     mat_peptide     353..1891
                     /product="RNA polymerase"
                     /codon_start=1
     mat_peptide     1892..2758
                     /product="coat protein"
                     /codon_start=1
BASE COUNT     1049 a    619 c    794 g    843 t
ORIGIN      3' portion of GPV genome.
        1 gtcagccacg agtgcaacag caggaacggc caataaaaat ttcttcaaac attggatatc
       61 cacgaagcat gggcagtgtg ggaatccttt agtgtccgtg acagatggta gtattgttgg
      121 aatacatagc atggctagta cagttagttc gatgaacatg tacgctggtt ttccagaaaa
      181 ctttgtggaa gattatctaa gcaatgatat gctagagtgg acaaaaggac ggaaactcaa
      241 tgcagacagg agctgttggg atggtatcac actggtgaat agcaaagcgg agggtctatt
      301 taagatggcc aaagatatat tcaccctcga tgacggcaac tgggaatttc aatcaggcaa
      361 caagaattgg atgtatgata aactagaaag aaatttaaaa gccgtgggtc gcactagggg
      421 aaatttagta acaaagcatt cagtgaaagg aaagtgtatg ctatttcaaa cttacctctc
      481 agtcgagcca ggagaagctg agtatttcac accactcatg ggcgcctaca caaagagcgc
      541 tctcaacaag gaagcatata ttaaagactt gagtaagtat tcgggtgaaa taagtgttgg
      601 aaatgtgaac tgtgacatct ttgaacgggc atttggaaaa gttgtggctc taatggagag
      661 caagggcttc cataagtgcg catatgttac aaatgagcag gatatattat catcattgaa
      721 catgaaagcg gctgttggag cgctgtattc aggtaagaag cgtgagtact ttgcagattt
      781 ttctgaccaa gataagtatg atattgtcag agaaagctgt aaaagattgt tccttgggaa
      841 aatgggagtg tggaatggat ctctaaaagc tgaacttcga ccaattgaaa aggttatggc
      901 aaataaaaca cgttcgttta cagcagcacc cttagatacg ctccttggtg gaaaggtatg
      961 cgtcgacgat ttcaataatc aattctatag tcgtcacttt gatctgcctt ggacagttgg
     1021 catgagtaaa tttcgtaaag gatgggatac tttgctgagg aagctaccag agaactggat
     1081 ttattgcgat gcagacggct cccaatttga cagctcattg tcaccatatt taataaacgc
     1141 cgacttaaaa cttcgattac atttcatgga ggattgggat gttggggaaa ctatgctcaa
     1201 gaatttatac acggagattg tgtacacacc aatagcaaca ccagatggaa cgatagtaaa
     1261 gaaatttaag ggtaacaaca gcggccaacc atccacagtt gttgacaatt cattaatggt
     1321 cgtctttgca atgtactatg caatggaaat gagcaacgtt aataacatcc acgataaatg
     1381 tgttttcttc gtgaacggtg atgatttaat tatagcagtt gaaccaggct ctgaaacatt
     1441 ccttgatagt ttgcaaaatc tctttcatca acttggctta aattacaact ttgacaatcg
     1501 aacgcgcaat aaggaagagc tgtgtttcat gtcacacatg ggtattttac aagaagacat
     1561 atatatacca aaactggata aggagcgcat agtgtcgata ttggagtggg atcgcgctca
     1621 gcagcctgag catagattgg aagctctatg cgcagccatg atcgaagctt ggggatatcc
     1681 ggaattgcta gatcgaatcc gaaagttcta ttattgggtt cttgaacaag caccgtataa
     1741 tgagttgagt acattaggta aagcgccatt tatctctgaa gcagccctgc ggaatttata
     1801 cactgattgt gaggcaacgg aagcggagtt agcacgatac ctcgaacttt acgacagcga
     1861 tgcacccgta gaagacacat ttgtgttcca agctaatgat gaattagatg caggcatgca
     1921 aacaagtaag aaacagaagg atggtaatga taaatctatt gaacaacgcg atccagcatc
     1981 atcacaagtt agttcattag gcaagaaaga cggtgaaggc ggttcaggaa tgagtagaaa
     2041 caaagacagg gatgtgaacg ttggcacaac agggactttt agtgttccac gaatcaaaca
     2101 gataccacag aaaggcatct cgataccaat ggacggagga aagtcaatac tcaacttaga
     2161 tcacttacta cagtataaac caaatcaatt gaatatatcg aacacaagag ccacggtggc
     2221 acaatttaaa acctggatgg agagagtgca agaggattac ggtgtcacta aaggtgaaat
     2281 gggcataatt ctgaatggtt tgatggtgtg gtgcatcgaa aatggaacct caccaaatat
     2341 aaatgggact tggactatga tggatggcga tgagcaagtc gcgtaccctt tacggccgat
     2401 cgttgaacat gcaaaaccaa ccttacggca aataaaggcg catttttcag cactcgcgga
     2461 ggcgtacatt gaaatgagaa attcagagca ggcttatatg ccaagatatg gactacaaag
     2521 aaatcttaca gacatgggcc tcgcacggta tgcatttgat ttttatgaag tcacatcaag
     2581 aacaccagtt agagcgcgcg aggctcacgc acaaatgaaa gcagcggccc tacgtaattc
     2641 aaggccaagg ctgtttggac tagacggtaa cgtcacaacc acggatgagg acacggagag
     2701 gcacacagca catgtcgtga atgcacggat gcaccatctt gatggtgcgc atatgcagtg
     2761 atgtttcggt tagtaaccgg ttatgggctt ccatttaaaa agtcccgagt gccgaacttg
     2821 tatttcggct agtgtagtga aactatgatt cactcgttca aggcagtttc tactttaagg
     2881 atgacttggg aattagtagc tcccaatgcc agtcacgatg gtgactacca agagtcaaca
     2941 cttggtttga ggttgatcgt ccgaagatct atccggagta cggttttgta aagaaggtga
     3001 attctgatac cccaccttta ccctacaatg gaatgctact ttagagacta gctaggattg
     3061 agaccgaaat ctcacatact ggcatggcca gtagttgatc acttaatgat caggtgacca
     3121 ctctacagtc aaactggaac ccgtagtatc ctatccttac ctaatatcgt aagttttatt
     3181 tactggtgta gcgtggttca accaccttat aaacactttg aatattagga tcgagctgtt
     3241 cgtctgaagg cactaagagt ggcttgacca tgtgtgcgtt cttacgttgc agtaagagga
     3301 actcc
//