From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: omp alpha =Omp alpha [Thermotoga maritima, Genomic, 1554 nt]
Date: 27 Jan 93 05:57:19 GMT
Distribution: bionet
Checksum: 20349 5

LOCUS       S118575      1554 bp    DNA             BCT       15-JAN-1993
DEFINITION  omp  alpha =Omp alpha [Thermotoga maritima, Genomic, 1554 nt]
ACCESSION   S49394 X68276
KEYWORDS    .
SOURCE      Thermotoga maritima
  ORGANISM  Thermotoga maritima
            Unclassified.
REFERENCE   1  (bases 1 to 1554)
  AUTHORS   Engel,A.M., Cejka,Z., Lupas,A., Lottspeich,F. and Baumeister,W.
  TITLE     Isolation and cloning of Omp alpha, a coiled-coil protein spanning
            the periplasmic space of the ancestral eubacterium Thermotoga
            maritima.
  JOURNAL   EMBO J. 11, 4369-4378 (1992)
  STANDARD  full automatic
COMMENT     This entry [NCBI gibbsq 118575] was created by the journal scanning
            component of NCBI/GenBank at the National Library of Medicine.
            This sequence comes from Fig. 6.  The authors begin their numbering
            at -26.  Zero is not present in the numbering.
FEATURES             Location/Qualifiers
     CDS             27..1229
                     /note="periplasmic space coiled-coil protein;  For the
                     protein sequence (NCBI gibbsq 118576):  Method: conceptual
                     translation with partial peptide sequencing.  This
                     sequence comes from Fig. 6.  The authors begin their
                     numbering at -20.  Zero is not present in the numbering."
                     /gene="omp <alpha>"
                     /product="Omp alpha"
                     /codon_start=1
                     /translation="MKRVLLTVAMLSVFFSAMFAFFPDVPKDHWAYEYVWKLWQRGIF
                     IGYPDGEFKGDRYITRYEAATAVSRLLDFIEQKMLAGASGDLAQVVGNLSDKYMALEE
                     KVNGLTGILDTLASQIGTTQANLTETERELLEKIDAVKEEIEMEFDKEISLNREVVNN
                     IGLKLGNLSRDYERYKENADAKISEVNEKLAALEKDLGNKIADLEGIVNLHEKDIINI
                     YNKISSVNEELNNKIAATEEKLSRKDEEISAMVELHEKDIINLYNKVAALNEDLNKKI
                     LDTKAELSAKIESQEKTLNMVYTKLLDTESKLNDEISALKEKDAEIQKTVDLHEQDIV
                     NLYGKTSSLEEDLNMKYNETNEKIDQVKAELEDKIESVKAYNRNLSILTGAFFGILGL
                     ILIAISGK"
BASE COUNT      494 a    355 c    365 g    340 t
ORIGIN      
        1 gatcaatgag aagggaggtt tgtcccatga agagagttct tcttaccgtt gcaatgctgt
       61 ccgttttctt ctcagcgatg ttcgcgttct tccctgatgt tccaaaagat cactgggctt
      121 acgagtacgt ctggaagctg tggcagaggg gtatcttcat aggttatccg gacggcgagt
      181 tcaaagggga caggtacatc accagatacg aagcagcgac tgcggtgagc aggctcctcg
      241 atttcatcga acagaagatg cttgcgggtg cttcaggtga tctggcacag gtcgttggaa
      301 acctctccga caagtacatg gccctcgagg agaaggttaa cggtctcacc ggcatactgg
      361 acactcttgc atctcagata ggtaccactc aggccaatct cacagaaacc gaaagagaac
      421 tgctcgagaa gatcgatgct gtgaaagaag agatcgagat ggagttcgac aaagagatct
      481 cgctcaacag agaagttgtg aacaacatcg ggctcaaact tggaaatctc tccagagact
      541 acgaaagata caaggagaat gcggacgcaa agatctccga agtgaacgaa aaactcgcag
      601 cccttgaaaa ggaccttgga aacaagatcg ccgatctcga aggaatagtc aaccttcacg
      661 agaaagacat cataaacatc tacaacaaga tcagttccgt taacgaagaa ctcaacaaca
      721 aaatcgccgc gacagaagag aaactctcca ggaaagatga agaaatctcc gcaatggtcg
      781 aacttcacga aaaagacatc ataaacctct acaacaaagt cgctgcactc aacgaagatc
      841 tcaacaaaaa aatacttgac acgaaggccg aactttctgc taaaatagag tcacaggaga
      901 aaacgttgaa catggtctac acaaaactcc tcgacacaga aagcaaattg aacgatgaaa
      961 tttccgctct caaggaaaag gacgcggaga tacagaagac ggttgatctt catgaacagg
     1021 atatcgtcaa cctctacgga aaaacgtcgt ctctcgaaga agacctcaac atgaagtaca
     1081 acgagactaa cgaaaagatc gatcaggtga aggcggaact cgaggacaaa atcgaaagcg
     1141 tgaaggctta caacaggaat ctcagcatcc tcacaggtgc gttctttgga attctcggtc
     1201 tcattctgat cgcaatcagt ggtaaataaa accaaaattt attctgaggg gaggtaagat
     1261 gttatgaaga agttgctcgc tcttttcctg gtactgggtc tttagtcaca gcagcgtttg
     1321 cctacgaaga cgtcgttaaa gtcaatgtct ctggaactgg ctacttcaac gcgtacctcg
     1381 atgaagaagg catcgatctt gaaggtggta ttagtgattt gtctgtgtcc atttctccaa
     1441 gctctggcag tgtaacagca cctgctacca ttacagcaga atttccattg acgtccttgg
     1501 aacagacgct tctctcagca agatagctgt cacaacggat ctgttcgatc tcac
//