From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Southampton virus capsid protein, polyprotein, and two ORF genes,
Date: 29 Dec 92 00:47:19 GMT
Distribution: bionet
Checksum: 24207 15

LOCUS       SOUCAPPRO    7696 bp ss-RNA             VRL       03-DEC-1992
DEFINITION  Southampton virus capsid protein, polyprotein, and two ORF genes,
            complete cds.
ACCESSION   L07418
KEYWORDS    capsid protein; polyprotein.
SOURCE      Southampton virus cDNA to genomic RNA.
  ORGANISM  Southampton virus
            Viridae; Nonclassified viruses.
REFERENCE   1  (bases 1 to 7696)
  AUTHORS   Lambden,P.R., Caul,O., Ashley,C. and Clarke,I.N.
  TITLE     Sequence and genome organization of a human Small Round Structured
            (Norwalk-like) Virus
  JOURNAL   Unpublished (1993)
  STANDARD  full automatic
FEATURES             Location/Qualifiers
     5'UTR           1..145
     3'UTR           7619..7696
     CDS             146..5359
                     /product="polyprotein"
                     /codon_start=1
                     /translation="MALGLIGRTTPEPTGTAGPPPKQQRDRPPRTQEEVQYGMGWSDR
                     PIDQNVKSWEELDTTVKEEILDNHKEWFDAGGLGPCTMPPTYERVKDDSPPGEQVKWS
                     ARDGVNIGVERLTTVSGPEWNLCPLPPIDLRNMEPASEPTIGDMIEFYEGHIYHYSIY
                     IGQGKTVGVHSPQAAFSVARVTIQPIAAWWRVCYIPQPKHRLSYDQLKELENEPWPYA
                     AITNNCFEFCCQVMNLEDTWLQRRLVTSGRFHHPTQSWSQQTPEFQQDSKLELVRDAI
                     LAAVNGLVSQPFKNFLGKLKPLNVLNILSNCDWTFMGVVEMVILLLELFGVFWNPPDV
                     SNFIASLLPDFHLQGPEDLARDLVPVILGGIGLAIGFTRDKVTKVMKSAVDGLRAATQ
                     LGQYGLEIFSLLKKYFFGGDQTERTLKGIEAAVIDMEVLSSTSVTQLVRDKQAAKAYM
                     NILDNEEEKARKLSAKNADPHVISSTNALISRISMARSALAKAQAEMTSRMRPVVIMM
                     CGPPGIGKTKAAEHLAKRLANEIRPGGKVGLVPREAVDHWDGYHGEEVMLWDDYGMTK
                     ILDDCNKLQAIADSAPLTLNCDRIENKGMQFVSDAIVITTNAPGPAPVDFVNLGPVCR
                     RVDFLVYCSAPEVEQIRRVSPGDTSALKDCFKLDFSHLKMELAPQGGFDNQGNTPFGK
                     GTMKPTTINRLLIQAVALTMERQDEFQLQGKMYDFDDDRVSAFTTMARDNGLGILSMA
                     GLGKKLRGVTTMEGLKNALKGYKISACTIKWQAKVYSLESDGNSVNIKEERNILTQQQ
                     QSVCTASVALTRLRAARAVAYASCIQSAITSILQIAGSALVVNRAVKRMFGTRTATLS
                     LEGPPREHKCRVHMAKAAGKGPIGHDDVVEKYGLCETEEDEEVAHTEIPSATMEGKNK
                     GKNKKGRGRRNNYNAFSRRGLNDEEYEEYKKIREEKGGNYSIQEYLEDRQRYEEELAE
                     VQAGGDGGIGETEMEIRHRVFYKSKSRKHHQEERRQLGLVTGSDIRKRKPIDWTPPKS
                     AWADDEREVDYNEKISFEAPPTLWSRVTKFGSGWGFWVSPTVFITTTHVIPTSAKEFF
                     GEPLTSIAIHRAGEFTLFRFSKKIRPDLTGMILEEGCPEGTVCSVLIKRDSGELLPLA
                     VRMGAIASMRIQGRLVHGQSGMLLTGANAKGMDLGTIPGDCGAPYVYKRANDWVVCGV
                     HAAATKSGNTVVCAVQASEGETTLEGGDKGHYAGHEIIKHGCGPALSTKTKFWKSSPE
                     PLPPGVYEPAYLGGRDPRVTVGPSLQQVLRDQLKPFAEPRGRMPEPGLLEAAVETVTS
                     SLEQVMDTPVPWSYSDACQSLDKTTSSGFPYHRRKNDDWNGTTFVRELGEQAAHANNM
                     YEQAKSMKPMYTGALKDELVKPEKVYQKVKKRLLWGADLGTVVRAARAFGPFCDAIKS
                     HTIKLPIKVGMNSIEDGPLIYAEHSKYKYHFDADYTAWDSTQNRQIMTESFSIMCRLT
                     ASPELASVVAQDLLAPSEMDVGDYVIRVKEGLPSGFPCTSQVNSINHWLITLCALSEV
                     TGLSPDVIQSMSYFSFYGDDEIVSTDIEFDPAKLTQVLREYGLRPTRPDKSEGPIIVR
                     KSVDGLVFLRRTISRDAAGFQGRLDRASIERQIYWTRGPNHSDPFETLVPHQQRKVQL
                     ISLLGEASLHGEKFYRKISSKVIQEIKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDRN
                     LLPEFVNDDGV"
     CDS             5343..6983
                     /function="viral capsid"
                     /note="putative"
                     /product="capsid protein"
                     /codon_start=1
                     /translation="MMMASKDAPQSADGASGAGQLVPEVNTADPLPMEPVAGPTTAVA
                     TAGQVNMIDPWIVNNFVQSPQGEFTISPNNTPGDILFDLQLGPHLNPFLSHLSQMYNG
                     WVGNMRVRILLAGNAFSAGKIIVCCVPPGFTSSSLTIAQATLFPHVIADVRTLEPIEM
                     PLEDVRNVLYHTNDNQPTMRLVCMLYTPLRTGGGSGNSDSFVVAGRVLTAPSSDFSFL
                     FLVPPTIEQKTRAFTVPNIPLQTLSNSRFPSLIQGMILSPDASQVVQFQNGRCLIDGQ
                     LLGTTPATSGQLFRVRGKINQGARTLNLTEVDGKPFMAFDSPAPVGFPDFGKCDWHMR
                     ISKTPNNTGSGDPMRSVSVQTNVQGFVPHLGSIQFDEVFNHPTGDYIGTIEWISQPST
                     PPGTDINLWEIPDYGSSLSQAANLAPPVFPPGFGEALVYFVSAFPGPNNRSAPNDVPC
                     LLPQEYITHFVSEQAPTMGDAALLHYVDPDTNRNLGEFKLYPGGYLTCVPNGVGAGPQ
                     QLPLNGVFLFVSWVSRFYQLKPVGTASTARGRLGVRRI"
     CDS             6769..7122
                     /note="putative;  ORF"
                     /codon_start=1
                     /translation="MSTLIPTGTLGSSNYTLEVTSPVYQTGWVPGLNSFLLMVFFSLS
                     LGYLAFISSSLWEQPVRQEVGLECAVYNGPSHYRSNCRVSCWLSIGCGHPGWCRSCAS
                     ESEIPTRLSPAKEYF"
     CDS             6983..7618
                     /note="putative;  ORF"
                     /codon_start=1
                     /translation="MAQAIIGAIAASAAGSALGAGIQAGAEAALQSQRYQQDLALQRN
                     TFEHDKDMLSYQVQASNALLAKNLNTRYSMLIAGGLSSADASRAVAGAPVTRLIDWNG
                     TRVAAPRSSATTLRSGGFMAVPMPVQPKSKTPQSSGFSNPAYDMSTVSSRTSSWVQSQ
                     NSLRSVSPFHRQALQTVWVTPPGSTSSSSVSSTPYGVFNTDRMPLFANLRR"
BASE COUNT     2074 a   1858 c   1919 g   1845 t
ORIGIN      
        1 ggcgtcgaaa gacgtcgttg caactaatgt tgcaagcaat aacaatgcta acaacactag
       61 tgctacatct cgatttttat cgagatttaa gggcctagga ggtggcgcaa gcccccctag
      121 ccctataaaa attaaaagta cagaaatggc tctggggtta attggcagaa cgaccccaga
      181 accaacaggg accgctggtc caccacccaa acaacagagg gaccgacctc ctagaactca
      241 ggaggaggtc cagtatggta tggggtggtc tgacaggccc attgatcaaa acgtcaaatc
      301 atgggaagag cttgacacca cagtcaagga agagatccta gacaaccaca aggaatggtt
      361 tgacgctggt ggtttgggtc cttgcacaat gcctccaaca tatgaacggg tcaaggatga
      421 cagtccacct ggtgaacagg ttaaatggtc cgcacgtgat ggagtcaaca ttggagtgga
      481 gcgcctcaca acagtgagtg gacccgagtg gaatctttgc cctttacccc ccattgactt
      541 gaggaatatg gaaccagcta gtgaacccac tattggagat atgatagaat tctatgaagg
      601 ccacatctat cattactcca tatacattgg gcaaggcaaa acagtcggcg tccattctcc
      661 acaggcagcg ttctcagtgg ctagggtgac catccaaccc atagccgctt ggtggagggt
      721 ttgttacata ccccaaccca agcacagact gagttacgac caactcaagg aattagagaa
      781 tgagccatgg ccatatgcgg ccataaccaa taattgtttt gaattctgct gtcaagtcat
      841 gaatcttgag gacacatggt tacaaaggcg gctggtcacg tcgggcagat tccaccaccc
      901 cacccaatcg tggtcacaac agacccctga gttccagcaa gatagcaagt tagagttggt
      961 cagggacgcc atattagctg cagtaaatgg tcttgtttcg cagcccttta agaacttctt
     1021 gggtaaactc aaacctctca atgtgctcaa cattctgtcc aactgtgatt ggaccttcat
     1081 gggagtggtg gagatggtca tactattact tgaactcttt ggcgtgttct ggaacccgcc
     1141 tgatgtgtcc aatttcatag cgtccctcct ccctgacttc catcttcagg gacctgaaga
     1201 cttggcacga gatctagtcc cagtgattct tggcggtata ggactggcca tcgggttcac
     1261 cagagataag gtcacaaagg ttatgaagag tgctgtggat ggtcttcgag ctgctacaca
     1321 attgggacag tatgggttag aaatattctc actactcaaa aagtatttct ttggggggga
     1381 tcagactgag cgcaccctca aaggcattga ggcggcagtc atagatatgg aagtgttgtc
     1441 ctccacatca gtgacacagc tagtgaggga caaacaggca gcaaaagctt atatgaacat
     1501 cttggacaat gaagaagaga aggccaggaa gctctctgct aaaaacgctg acccacatgt
     1561 gatatcctca acaaatgccc taatatcgcg catatccatg gcacgatctg cattggctaa
     1621 ggcccaggct gaaatgacca gtcgaatgag accagttgtc attatgatgt gtggtccacc
     1681 tgggattggg aagaccaagg ctgctgagca cctagcaaaa cgtctagcca atgagatcag
     1741 acctggtggt aaggtggggt tagttccccg tgaagctgtc gaccactggg acggttatca
     1801 tggtgaggaa gtgatgctgt gggacgacta tggcatgaca aaaatactcg atgactgtaa
     1861 taaactccaa gccattgctg attcggcccc acttacctta aattgtgata ggattgaaaa
     1921 caaaggaatg cagttcgttt cagatgcaat agtcatcacc accaacgccc caggccccgc
     1981 ccctgtggac tttgtcaacc ttggtccagt gtgtagacgg gtcgacttct tggtctactg
     2041 ctctgcccca gaggtggaac agatacggag ggttagccct ggtgatacat cagcactgaa
     2101 agactgcttc aagctagact tctcccattt aaaaatggaa ctggccccac aaggtgggtt
     2161 tgacaatcaa gggaacacac cgtttggcaa aggtaccatg aagccaacaa ccattaacag
     2221 acttctcata caagctgtgg cccttaccat ggaaaggcag gatgagttcc agctacaggg
     2281 aaagatgtat gactttgatg atgacagggt gtcagcgttc accaccatgg cacgtgataa
     2341 tggcctaggc atcctgagca tggcaggtct gggtaagaag ctacgcggtg tcacaacgat
     2401 ggagggctta aaaaatgccc tgaaggggta caaaattagt gcgtgcacga taaaatggca
     2461 ggccaaagtg tactcactag aatcagatgg taacagtgtc aacattaaag aggagaggaa
     2521 catcctaact cagcaacaac agtcggtgtg tactgcctct gtcgcgctca ctcgtcttcg
     2581 agctgcgcgc gcggtggcat acgcgtcatg catccagtcg gctataactt ccatactaca
     2641 aattgctggc tcagccctag tggtcaacag agcagtgaag agaatgtttg gcacgcgtac
     2701 tgccaccttg tccctagagg gcccccccag agaacacaaa tgcagggtcc atatggccaa
     2761 ggccgcagga aagggaccta ttggccatga tgatgtggta gaaaagtatg ggctttgcga
     2821 aactgaggag gacgaagaag tggcccacac tgaaatccct tctgctacca tggaaggcaa
     2881 gaacaagggg aagaacaaga aaggacgtgg tcggaggaac aattacaacg ccttctcccg
     2941 cagaggactc aatgatgaag agtacgaaga gtacaagaag atacgcgagg agaaaggtgg
     3001 caattatagc atacaggagt acctagaaga cagacaaaga tatgaagaag agctagcaga
     3061 ggttcaagca ggcggagatg gaggaattgg ggaaactgaa atggaaatcc gccacagagt
     3121 gttctacaaa tccaagagca gaaagcatca ccaggaagag cgacgccagc tagggctggt
     3181 gacaggctcc gacattcgga agagaaaacc aatcgactgg accccaccca agtcagcatg
     3241 ggcagatgat gagcgtgagg tagattacaa tgagaagatc agctttgaag cgccccccac
     3301 tttatggagc agagtgacaa agtttgggtc tggatggggt ttctgggtca gccctacagt
     3361 cttcataacc acaacgcacg ttataccaac cagtgcgaag gagttctttg gtgaacccct
     3421 aaccagcata gccatccaca gggctggtga gtttactctc ttcaggtttt caaagaaaat
     3481 taggcctgat cttacaggta tgatccttga ggagggttgc cccgagggca cggtgtgttc
     3541 agtactaata aagagggact ctggtgaact actgccattg gccgtgagaa tgggcgcgat
     3601 agcatcaatg cgcatacagg gccgccttgt ccatgggcaa tctggcatgt tactcactgg
     3661 tgctaatgct aagggcatgg atcttggaac catcccagga gactgtgggg ctccttatgt
     3721 ttataagaga gctaatgact gggtggtctg tggtgtgcac gctgctgcca ccaaatcagg
     3781 caacaccgtt gtgtgcgccg ttcaggccag tgaaggagaa accacgcttg aaggcggtga
     3841 caaaggtcat tatgctggac atgaaataat taagcatggt tgtggaccag ccctatcaac
     3901 taagaccaaa ttctggaaat catcccccga accactgccc cctggggttt atgaacccgc
     3961 ctacctcggg ggccgggacc ctagggtgac tgtcggtccc tcacttcaac aagtgttgcg
     4021 ggatcagcta aagccatttg ctgagccacg aggacgcatg ccagagccag gtctcttgga
     4081 ggccgcagtt gagactgtga cttcatcatt agagcaggtt atggatactc ccgtcccctg
     4141 gagctatagt gatgcgtgcc agtcccttga caagaccact agttctggct tcccctacca
     4201 cagaaggaag aatgacgact ggaatggcac cacctttgtt agggagttag gtgagcaggc
     4261 ggcacacgcc aacaacatgt atgagcaggc taaaagtatg aaacccatgt acacgggagc
     4321 acttaaagat gaactagtca aaccagagaa agtataccag aaagtgaaaa agcgcttgtt
     4381 atggggggca gacttgggca cggtagttcg ggctgcacgg gcttttggcc cattctgtga
     4441 tgctataaaa tcccacacaa tcaagttgcc tatcaaagtt ggaatgaatt caattgagga
     4501 tgggccactg atctatgcag aacattcaaa atataagtac cactttgatg cagattacac
     4561 agcttgggac tcaactcaaa ataggcaaat catgacagag tcattttcaa tcatgtgtcg
     4621 gctaactgca tcacccgaac tagcttcggt ggtggctcaa gacttgctcg caccctcaga
     4681 gatggatgtt ggcgactacg tcataagagt gaaggaaggc ctcccatctg gtttcccatg
     4741 cacatcacaa gttaatagta taaaccattg gttaataact ctgtgcgccc tttctgaagt
     4801 gactggcctg tcgccagacg ttatccaatc catgtcatat ttctctttct atggtgatga
     4861 tgaaatagtg tcaactgaca tagaatttga tccagcaaaa ctgacacaag ttcttaggga
     4921 gtatggactt agacccaccc gccccgacaa aagcgagggc ccaataattg taaggaagag
     4981 tgtggatggt ttggtcttct tacgtcgcac tatctcccgt gacgctgcgg gatttcaagg
     5041 gcgactggac cgagcatcca ttgaaagaca aatctactgg actagaggac ccaaccattc
     5101 agaccctttt gaaaccctgg tgccacacca acaaaggaaa gtccaactaa tatcattatt
     5161 gggtgaggcc tcactgcatg gtgagaagtt ctacaggaag atttcaagca aagtcatcca
     5221 ggaaattaaa acagggggcc ttgaaatgta cgtgccagga tggcaagcca tgttccgttg
     5281 gatgcggttc catgaccttg gtttgtggac aggagatcgc aatctcctgc ccgaatttgt
     5341 aaatgatgat ggcgtctaag gacgcccctc aaagcgctga tggcgcaagc ggcgcaggtc
     5401 aactggtgcc ggaggttaat acagctgacc ccttacccat ggaacccgtg gccgggccaa
     5461 caacagccgt agccactgct gggcaagtta atatgattga tccctggatt gttaataatt
     5521 ttgtccagtc accacaaggt gagttcacaa tttcccctaa taataccccc ggtgatattt
     5581 tgtttgattt acaattaggt ccacatctaa accctttctt gtcacatttg tcccaaatgt
     5641 ataatggctg ggttggaaat atgagagtta ggattcttct tgctgggaat gctttctcag
     5701 ctggaaagat tatagtttgt tgtgtccccc ctggcttcac gtcttcctct ctcaccatag
     5761 ctcaggctac attgtttccc catgtgattg ctgatgtgag aacccttgaa ccaatagaaa
     5821 tgcctctcga ggatgtacgc aatgtcctct atcacaccaa tgataatcaa ccaacaatgc
     5881 ggttggtgtg tatgctctac acgccgctcc gtactggtgg gggatctggt aattctgatt
     5941 ctttcgtagt tgctggtagg gtgctcacgg ctcctagtag cgacttcagt ttcttgttcc
     6001 ttgtcccacc tactatagaa cagaagactc gggcttttac tgtgcctaat atccccttgc
     6061 aaaccttgtc caattctaga tttccttccc tcatccaggg gatgatcctg tctcctgacg
     6121 catctcaagt ggtccagttt caaaatggac gatgccttat agatggccaa ctcctaggca
     6181 ccacacccgc tacatcagga cagctgttca gagtaagagg aaagataaat cagggagccc
     6241 gcacgcttaa cctcacagag gtggatggca aaccattcat ggcatttgat tcccctgcac
     6301 ctgtggggtt ccccgatttt ggaaaatgtg attggcatat gagaatcagc aaaaccccaa
     6361 ataacacagg ctcaggtgat cccatgcgca gtgtcagcgt gcagaccaac gtgcagggtt
     6421 ttgtaccaca cctgggaagc atacagtttg atgaagtgtt caaccacccc acaggtgact
     6481 acattggcac cattgaatgg atttcccagc catctacacc tcctggaaca gatattaatc
     6541 tgtgggagat tcccgattat ggatcatccc tttcccaagc agctaatctg gcccccccag
     6601 tattcccccc tggatttggt gaggctcttg tgtactttgt ttctgctttt ccaggcccca
     6661 acaaccgctc agccccgaat gatgtacctt gtcttcttcc tcaagagtac ataacccact
     6721 tcgtcagtga acaagcccca acaatgggtg acgcagcttt gctgcattat gtcgaccctg
     6781 ataccaacag gaaccttggg gagttcaaac tataccctgg aggttacctc acctgtgtac
     6841 caaacggggt gggtgccggg cctcaacagc ttcctcttaa tggtgttttt ctctttgtct
     6901 cttgggtatc tcgcttttat cagctcaagc ctgtgggaac agccagtacg gcaagaggta
     6961 ggcttggagt gcgccgtata taatggccca agccattata ggagcaattg ccgcgtcagc
     7021 tgctggctca gcattgggtg cgggcatcca ggctggtgcc gaagctgcgc ttcagagtca
     7081 gagataccaa caagacttag ccctgcaaag gaatactttt gaacatgata aagatatgct
     7141 ttcctaccag gttcaggcaa gtaatgcact tttagcaaag aatctcaata cccgctattc
     7201 tatgcttatt gcaggaggtc tttctagtgc tgatgcttca cgggctgttg ctggagcccc
     7261 agtaacacga ttgattgatt ggaacggcac tcgggttgcc gcccccagat caagtgcaac
     7321 aactctgagg tctggtggct tcatggcagt tcccatgcct gttcaaccca aatctaagac
     7381 cccacaatcc tctgggttct ctaatcctgc ttatgatatg tccacagttt cctctaggac
     7441 ttcttcttgg gtgcagtcac aaaattccct gcgaagtgta tcaccattcc acaggcaggc
     7501 cctgcagact gtatgggtca ctccacctgg gtctacttct tcttcttctg tttcctcaac
     7561 accttatggt gtttttaaca cggataggat gccgctattc gcaaatttgc ggcgctaatg
     7621 ttgtaatata atgcagcagt gggcactata ttcaatttgg tttaattagt aaataatttg
     7681 gctattgatt agtgtt
//