From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Bovine immunodeficiency-like virus proviral pol, env, and vif
Date: 3 Jan 93 22:03:40 GMT
Distribution: bionet
Checksum: 50094 16

LOCUS       BIMPEVPP     7097 bp ds-DNA             VRL       21-DEC-1992
DEFINITION  Bovine immunodeficiency-like virus proviral pol, env, and vif
            protein genes, complete cds.
ACCESSION   L04972
KEYWORDS    Sp1 binding; env polyprotein; envelope glycoprotein;
            pol polyprotein; polymerase; reverse transcriptase; vif protein.
SOURCE      Bovine immunodeficiency-like virus (individual_isolate R-29)
            (library: lambda GEM11) DNA.
  ORGANISM  Bovine immunodeficiency-like virus
            Viridae; ss-RNA enveloped viruses; Positive strand RNA virus;
            Retroviridae; Lentivirinae.
REFERENCE   1  (bases 1 to 7097)
  AUTHORS   Nadin-Davis,S.A., Chang,S.C., Roth,J.A. and Carpenter,S.
  TITLE     Isolation and characterization of cDNAs encoding rev and tat of
            bovine immunodeficiency-like virus
  JOURNAL   Unpublished (1993)
  STANDARD  full automatic
FEATURES             Location/Qualifiers
     misc_signal     6493..6508
                     /function="initiation site of plus strand DNA synthesis"
                     /standard_name="polypurine tract"
                     /citation=[1]
                     /note="putative"
     LTR             6511..7097
                     /note="regions: U3 (6511..6894), R (6895..7003), and U5
                     (7004..7097); putative"
     enhancer        6548..6558
                     /standard_name="NF-kappaB enhancer consensus sequence"
                     /citation=[1]
                     /note="putative"
     enhancer        6623..6629
                     /standard_name="core enhancer sequence"
                     /citation=[1]
                     /note="putative"
     enhancer        6720..6727
                     /standard_name="core enhancer sequence"
                     /citation=[1]
                     /note="putative"
     enhancer        6763..6770
                     /standard_name="core enhancer sequence"
                     /citation=[1]
                     /note="putative"
     CAAT_signal     6790..6793
                     /note="putative"
     protein_bind    6817..6825
                     /bound_moiety="Sp1 factor"
                     /citation=[1]
                     /note="putative"
     protein_bind    6827..6836
                     /bound_moiety="Sp1 factor"
                     /citation=[1]
                     /note="putative"
     protein_bind    6848..6857
                     /bound_moiety="Sp1 factor"
                     /citation=[1]
                     /note="putative"
     TATA_signal     6868..6874
                     /note="putative"
     polyA_signal    6981..6986
     terminator      7023..7026
     CDS             191..3352
                     /function="pol protein precursor"
                     /gene="pol"
                     /citation=[1]
                     /note="putative"
                     /product="pol polyprotein"
                     /codon_start=1
                     /translation="MLPLWQTWPPSKKLQVKKREVLLCPLWAEEPITEQFSPEQHEFC
                     DPICTPSYIRLDKQPFIKVFIGGRWVKGLVDTGADEVVLKNIHWDRIKGYPGTPIKQI
                     GVNGVNVAKRKTHVEWRFKDKTGIIDVLFSDTPVNLFGRSLLRSIVTCFTLLIHTEKI
                     EPLPVKVRGPGPKVPQWPLTKEKYQALKEIVKDLLAEGKISEAAWDNPYNTPVFVIKK
                     KGTGKWRMLMDFRELNKITVKGQEFSTGLPYPPGIKECEHLTAIDIKDAYFTIPLHED
                     FRPFTAFSVVPVNREGPIERFQWNVLPQGWICSPAIYQTTTQKIIENIKKSHPDVMLY
                     QYMDDLLIGSNRDDHKQIVQEIRDKLGSYGFKTPDEKVQEERVKWIGFELTPKKWRFQ
                     PRQLKIKNPLTVNELQQLVGNCVWVQPEVKIPLYPLTDLLRDKTNLQEKIQLTPEAIK
                     CVEEFNLKLKDPEWKDRIREGAELVIKIQMVPRGIVFDLLQDGNPIWGGVKGLNYDHS
                     NKIKKILRTMNELNRTVVIMTGREASFLLPGSSEDWEAALQKEESLTQIFPVKFYRHS
                     CRWTSICGPVRENLTTYYTDGGKKGKTAAAVYWCEGRTKSKVFPGTNQQAELKAICMA
                     LLDGPPKMNIITDSRYAYEGMREEPETWAREGIWLEIAKILPFKQYVGIGWVPAHKGI
                     GGNTEADEGVKKALEQMAPCSPPEAILLKPGEKQNLETGIYMQGLRPQSFLPRADLPV
                     AITGTMVDSELQLQLLNIGTEHIRIQKDEVFMTCFLENIPSATEDHERWHTSPDILVR
                     QFHLPRRIAKEIVARCQECKRTTASPVRGTNPRGRFLWQMDNTHWNKTIIWVAVETNS
                     GLVEAQVIPEETALQVALCILQLIQRYTVLHLHSDNGPCFTAHRIENLCKYLGITKTT
                     GIPYNPQSQGVVERAHRDLKDRLAAYQGDCETVEAALSLALVSLNKKRGGIGGHTPYE
                     IYLESEHTKYQDQLEQQFSKQKIEKWCYVRNRRKEWKGPYKVLWDGDGAAVIEEEGKT
                     ALYPHRHMRFIPPPDSDIQDGSS"
     CDS             3211..3807
                     /gene="vif"
                     /citation=[1]
                     /note="putative"
                     /product="vif protein"
                     /codon_start=1
                     /translation="MERPLQSVVGRRRGSSNRGRGKNSLISTPSYALHPPPRFRYPRW
                     EFVRQTEYSMTACVRKGKLVLIYQYAIWKRVWTIETGFTDPSLFMTPAGTHTTEEIGH
                     LDLFWLRYCSCPHEMPPWLDFLRGTLNLRISCRRALQASVLTSTPRHSLQRLAALQLC
                     TNACLCWYPLGRINDTTPLWLNFSSGKEPTIQQLSGHP"
     CDS             3339..3503
                     /citation=[1]
                     /note="putative;  ORF W"
                     /codon_start=1
                     /translation="MGVREADRIQHDRVRKKREISSYLPVRDLEKSLDDRNRIYRSKS
                     VYDPSWNTHH"
     CDS             3699..3941
                     /citation=[1]
                     /note="putative;  ORF Y"
                     /codon_start=1
                     /translation="MSLLVPVRTHQRHHPVVVELFVWEGTNDPTTEWPPLTRRNIHRL
                     WQYARTLGGNDNVATAQRKLWRKANWLAFLKHVQRT"
     CDS             4025..6652
                     /function="envelope glycoprotein precursor"
                     /gene="env"
                     /citation=[1]
                     /note="putative"
                     /product="envelope glycoprotein"
                     /codon_start=1
                     /translation="MDQDLDRAEHGERGGGSEELLQEEINEGRLTAREALQTWINNGE
                     IHPWVLAGMLSMGVGMLLGVYCQLPDTLIWILMFQLCLYWGLGETSRKLDKDSWQWVR
                     SVFIIAILGTLTMAGTALADDDQSTLIPNITKIILVLRRSNSEDILAARDTIDWWLSA
                     NQEIPPKFAFPIILISSPLAGIIGYYVTERHLEIFKKGCQICGSLSSMWGMLLEEIGR
                     WLARREWNVSRVVVILLISFSWGMYVNRVNASGSHVAMVTSPPGYRIVNDTSQAPWYC
                     FSSAPIPTCSPSQWGDKYFEEKINETLVKQVYKQAAKHSRATWIEPDLLEEAVYELAL
                     LSANDSRQVVVENGTDVCSSQNSSTNKGHPMTLLKLRGQVSETWIGNSSLQFCVQWPY
                     VLVGLNNSDSNISFNSGDWIATNCMHPITLNKSAQDLGKNFPRLTFLDGQLSQLKNTL
                     CGHNTNCLKFGNKSLSTNSLILCQDNPIGNDTFYSLSHSFSKQASARWILVKVPSYGF
                     VVVNDTDTPPSLRIRKPRAVGLAIFLLVLAIMAITSSLVAATTLVNQHTTAKVVERVV
                     QNVSYIAQTQDQFTHLFRNINNRLNVLHHRVSYLEYVEEIRQKQVFFGCKPHGRYCHF
                     DFGPEEVGWNNSWNSKTWNDLQDEYDKIEEKILKIRVDWLNSSLSDTQDTFGLETSIF
                     DHLVQLFDWTSWKDWIKIIIVIIVLWLLIKILLGMLRSCAKVSQNYQHLPTEEEDGDT
                     EPESSPARGDPASGSLYENWLNKIGESKNDAYRVWTEEYNSLKILFATCRWDLLIPQL
                     LQLPFFLLTLLLKLLWDIFRHAPILNLKGWTVGQGGTSGQQQPPDFPYVNWTGSREQN
                     NPEGGLDSGAWYEGLRGSQ"
BASE COUNT     2267 a   1502 c   1667 g   1661 t
ORIGIN      
        1 gatctcaaaa atcaaagatg caatttttgg tagcagctat gaaagaaatg gggatccaat
       61 caccaattcc agcagtcttg cctcacacac cagaagcata tgcctcccaa acctcagggc
      121 ccgaggatgg taggagatgt tacggatgtg ggaaaacagg acatttgaag aggaattgta
      181 aacagcaaaa atgctaccat tgtggcaaac ctggccacca agcaagaaac tgcaggtcaa
      241 aaaacgggaa gtgctcctct gccccttatg ggcagaggag ccaatcacag aacaattttc
      301 accagagcaa catgagttct gtgaccccat ctgcaccccc tcttatatta gattagacaa
      361 acagcctttt ataaaggtgt tcataggggg aagatgggta aaagggttag tagacactgg
      421 agcagatgag gtagtgctta agaacataca ttgggatagg ataaaagggt atccagggac
      481 accaattaaa caaattgggg taaatggagt aaatgtagcc aaaaggaaga cccacgtaga
      541 gtggagattt aaggataaga ctgggataat tgatgtcttg ttctcagata ctcctgtaaa
      601 cctttttggg agatctcttc tacgtagcat agtgacttgc ttcaccctac ttattcacac
      661 agaaaaaatc gaacccctac ccgtcaaggt aaggggacca gggcctaagg taccccagtg
      721 gcccttgaca aaagaaaagt atcaggctct taaggaaatt gtgaaagatc ttttagcaga
      781 aggaaaaatt tccgaagctg cttgggataa cccatataat accccagttt ttgttataaa
      841 gaaaaaggga acgggaaaat ggaggatgct aatggatttt agggaattaa ataagataac
      901 agttaaagga caagaattct ctacaggctt accttaccct ccaggaatta aggaatgtga
      961 acacttaact gcaatagata taaaagatgc ctactttact atccctttac atgaggactt
     1021 tagacccttt acagccttct ctgtagtccc tgtaaatcga gaaggaccta tagaaaggtt
     1081 ccagtggaat gttctaccac aaggatggat atgtagccct gccatttatc agactaccac
     1141 ccagaagatt atagaaaaca ttaaaaagag tcacccagat gtcatgttgt atcaatatat
     1201 ggatgatttg ttgattgggt ctaataggga tgatcataag caaatagtgc aggaaatcag
     1261 ggataagtta ggatcatatg gtttcaagac tccagatgaa aaggtccagg aagagagagt
     1321 gaaatggatc ggttttgagc tcacacccaa gaaatggcgt tttcagccca ggcaactaaa
     1381 gataaaaaac ccactcacag taaatgaatt acagcaatta gtaggtaatt gtgtttgggt
     1441 acagccagaa gtaaaaatcc ctctataccc cttaaccgat ctactgaggg ataagaccaa
     1501 tctccaagaa aagatacaac taacaccaga agccatcaag tgtgtagaag aattcaatct
     1561 aaaactaaaa gatccagaat ggaaagatag aataagagaa ggagcagaat tagtcataaa
     1621 aatacagatg gttcctcggg gcatagtatt tgatctgttg caagatggaa atcccatatg
     1681 gggaggagta aaaggactaa attatgatca ttcaaacaaa ataaaaaaga tacttagaac
     1741 tatgaatgag ctgaacagaa cagtggtaat tatgacagga agagaagcta gtttcctgct
     1801 tcctgggtct tctgaagatt gggaagcggc actccagaag gaggaaagtc taacacaaat
     1861 attcccagta aagttttata ggcactcctg cagatggacc tccatatgtg ggcctgtaag
     1921 agaaaatcta accacctact atactgacgg agggaagaaa gggaaaacag ctgcagcagt
     1981 atattggtgt gaaggaagga ctaaatcaaa ggtatttcca ggaaccaatc aacaggcgga
     2041 attgaaggcc atatgcatgg ctctcttgga tggaccacca aaaatgaata tcataacaga
     2101 tagtagatac gcctatgagg gaatgagaga agaaccagaa acgtgggcca gggaaggaat
     2161 ctggctggag attgccaaga tattgccctt taagcagtac gtggggatcg ggtgggtgcc
     2221 tgcacataaa gggataggag gaaatacaga ggcagatgaa ggagttaaga aagccttaga
     2281 acagatggcc ccgtgtagcc ctcctgaggc cattctatta aaaccaggag aaaaacaaaa
     2341 tctggagaca gggatctaca tgcaggggct tagaccacaa agcttcctcc caagagcaga
     2401 cttaccagta gccatcacag gaaccatggt agattcagag ctacagctac agctacttaa
     2461 cataggaact gagcatataa gaatccaaaa agatgaggtc ttcatgacct gtttcctaga
     2521 aaatatcccc tcagccactg aagatcatga gagatggcat acctcaccag acattttggt
     2581 taggcagttc catctcccga ggagaatagc taaagagata gtagccagat gccaagaatg
     2641 taaaaggaca accgctagcc cagtcagagg aacaaacccc agaggtcgat tcttatggca
     2701 gatggacaat actcactgga ataaaacaat tatttgggta gcagtagaga caaattcagg
     2761 attagtggaa gctcaggtga tccctgaaga aacagcacta caagtagctc tctgcatttt
     2821 acagctaatc cagagatata cagttcttca cttacatagt gacaacgggc cgtgctttac
     2881 tgcacacagg atagaaaatc tatgtaagta tctggggatc acaaaaacta cgggaatacc
     2941 ctacaaccca caatcccagg gagttgtaga aagagcccac agagatctaa aagacagatt
     3001 ggcagcttat cagggagatt gtgaaaccgt agaagcagcc cttagcctcg cattagtttc
     3061 tttaaataaa aaaagagggg gaataggggg ccatacacca tatgaaatat acctagaatc
     3121 agaacatacc aaataccaag accaactaga acaacaattt tcaaaacaaa aaattgaaaa
     3181 gtggtgttac gtaaggaaca gaagaaagga atggaaaggc ccctacaaag tgttgtggga
     3241 cggagacggg gcagcagtaa tagaggaaga gggaaaaaca gccttatatc cacaccgtca
     3301 tatgcgcttc atcccccccc cagattcaga tatccaagat gggagttcgt gaggcagaca
     3361 gaatacagca tgaccgcgtg cgtaagaaaa gggaaattag ttcttattta ccagtacgcg
     3421 atctggaaaa gagtctggac gatagaaaca ggatttacag atccaagtct gtttatgacc
     3481 ccagctggaa cacacaccac tgaagaaata ggtcacttag acctcttttg gcttaggtac
     3541 tgttcatgtc cgcatgagat gcccccgtgg ctagacttcc ttagaggcac cctcaatcta
     3601 cgcatttcct gtcgacgcgc tcttcaagcg tcagtgttga ctagcacccc tagacactcc
     3661 ctccaacgct tagctgcact tcagctgtgc accaacgcat gtctctgttg gtacccgtta
     3721 ggacgcatca acgacaccac cccgttgtgg ttgaactttt cgtctgggaa ggaaccaacg
     3781 atccaacaac tgagtggcca cccctaactc gtcgtaacat tcatagattg tggcaatatg
     3841 cccggacctt gggtggcaat gataatgttg ccacagccca aagaaagctt tggaggaaag
     3901 ccaattggct ggcttttctg aaacacgtgc aaaggaccta ggcgggactg tccacattgt
     3961 tgttgtccca tatgtagttg gcattgtcag ctttgctttt tgcagaaaaa tctaggaatc
     4021 aactatggat caggacctag accgcgcgga acacggggaa aggggaggag gatccgaaga
     4081 actgcttcag gaggagatca acgaagggag gctgacagcc agagaagctt tacaaacatg
     4141 gatcaataac ggtgagatcc acccttgggt cctggcagga atgctgtcca tgggagtagg
     4201 aatgctacta ggagtatatt gtcagttacc agacacactg atttggatac taatgtttca
     4261 attatgcctt tattggggtt tgggtgaaac atctagaaaa ttagacaagg atagttggca
     4321 gtgggtcaga agtgtattta taatagcaat attgggaact ctcactatgg caggaactgc
     4381 tttggccgac gacgatcaaa gtactttaat ccccaatatc acaaaaataa tacttgtctt
     4441 gagacgcagc aactcggagg atatattggc agccagagat accatagatt ggtggctctc
     4501 agctaatcag gaaatacctc caaagtttgc tttcccaata atattaatat cttcccctct
     4561 agcaggcata ataggatatt atgtcacgga aaggcactta gagatcttca aaaagggatg
     4621 tcaaatttgt gggagcctga gcagtatgtg gggaatgctt ttggaagaaa ttggcaggtg
     4681 gctcgcacgt agggaatgga atgttagtag agtagtggtt atcctcttaa tcagcttcag
     4741 ttggggaatg tatgtcaaca gggtaaatgc ctcagggtca catgtggcca tggtcaccag
     4801 ccctccaggg taccgcatag tgaatgatac cagccaggca ccttggtatt gcttctcctc
     4861 ggcaccaatc ccaacgtgta gtccctctca gtggggagac aaatattttg aggagaaaat
     4921 aaacgagaca ctggtcaaac aggtgtataa acaggccgcg aaacactcga gagccacgtg
     4981 gattgaacct gatctattgg aggaagcagt ctatgagcta gctctgttat cagctaatga
     5041 tagtcgtcag gtggtggtag aaaatggtac agacgtatgt agttcacaga actcgagcac
     5101 aaacaaaggc cacccaatga cgcttctaaa gttgagaggg caggtgtcag aaacttggat
     5161 aggaaattcc tccctccagt tttgtgtcca gtggccatat gtcttggtag gtcttaataa
     5221 tagtgatagt aatattagct tcaattcggg agattggata gcaaccaatt gtatgcaccc
     5281 aattacacta aataaaagtg cacaggatct aggaaaaaat tttccgagac taacatttct
     5341 tgacggacaa ctgtcccagt tgaagaacac actgtgcgga cataacacaa actgtttaaa
     5401 atttggaaac aagtccctca gtacaaattc cctaatacta tgccaagaca accccatcgg
     5461 caacgacacc ttttatagcc taagtcattc cttctcaaaa caggcctctg cccggtggat
     5521 tcttgtaaag gtccccagct atgggtttgt ggtagtaaat gacacagata caccaccatc
     5581 cctccgcatc cgaaagcctc gagcagtcgg actagcaata ttcctgcttg tgctggctat
     5641 catggccatc acatcctcct tggtggcagc tacaacgctc gtgaaccagc acacgacggc
     5701 taaggttgtg gagagggttg tgcaaaatgt gtcatatatt gctcaaaccc aggaccaatt
     5761 cacccacctg ttcagaaata taaacaacag attaaatgtc ctacaccata gagtttcata
     5821 cttggagtat gtagaggaaa tcagacaaaa acaagtattc tttggttgca aacctcatgg
     5881 aaggtattgc cactttgact ttggaccaga ggaagttgga tggaataata gttggaatag
     5941 caaaacttgg aatgatctac aagatgagta tgataagata gaagaaaaga tattaaaaat
     6001 tcgagtagac tggctcaata gctccctgag tgacacacag gacacctttg gcctggagac
     6061 ctctattttt gaccatttag tgcaattgtt tgattggact tcttggaaag actggataaa
     6121 aatcattata gtaatcattg tactttggct tctgataaag attctcctag gtatgttaag
     6181 aagctgcgcc aaggtcagcc agaattacca acatctccca acggaggagg aggacgggga
     6241 cacagagcca gaaagctccc cggcgagagg agacccggct tctggaagtc tctacgagaa
     6301 ttggttgaac aaaataggag aaagcaagaa cgacgcctat cgggtctgga cagaagaata
     6361 caacagcttg aagatcttgt tcgccacatg tcgctgggat ctcctgatcc ctcaactcct
     6421 tcagcttccg ttctttctgt taaccctcct gctcaaactc ctttgggaca tcttccgcca
     6481 cgctcctatt ttaaacttaa aagggtggac tgtggggcag ggtgggacct caggacaaca
     6541 gcagcccccg gacttcccat atgtgaattg gactggatcc agggaacaaa ataacccaga
     6601 agggggatta gactctgggg cttggtatga aggcctgaga ggttctcagt agattgtaag
     6661 tcttcggcga gactgcatgt ctgcacgtag acaggaaatg attatcttct cagctgattg
     6721 tggttaggcc gattactgga aactagacaa cctgattcat tagtggttaa gattatgcat
     6781 gagtgctcgc aatgatgtag ctgcttacgc ttgcttactc cgccctgaaa cgcctacctt
     6841 aacacgcaac acgcccacct gtaagagtat ataaaccata tcttcactct gtacttcagc
     6901 tcgtgtagct cattagctcc gagctcccca acctacagcc tgagaggcac tggctcggtt
     6961 gggtagccag cctttcgggt aataaaggct tgggcattcg gcatctaccc gtgcctcctg
     7021 tcttgtctta ctcgagcgaa cccacaactc cgtcctgctg agctcacagc tcgcggggcg
     7081 gtgaagaaca cccaaca
//