From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Anopheles gambiae RT2 retroposon.
Date: 31 Dec 92 01:46:13 GMT
Distribution: bionet
Checksum: 64864 13

LOCUS       MSQRT2RET    6733 bp ds-DNA             INV       18-DEC-1992
DEFINITION  Anopheles gambiae RT2 retroposon.
ACCESSION   M93691
KEYWORDS    nucleic acid binding protein; retroposon; reverse transcriptase.
SOURCE      Anopheles gambiae DNA.
  ORGANISM  Anopheles gambiae
            Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
            Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicoidea;
            Culicidae; Anophelelinae.
REFERENCE   1  (bases 1 to 6733)
  AUTHORS   Besansky,N.J., Paskewitz,S.M., Mills-Hamm,D.M. and Collins,F.H.
  TITLE     Distinct families of site-specific retroposons occupy identical
            positions in the rRNA genes of Anopheles gambiae
  JOURNAL   Mol. Cell. Biol. 12, 5102-5110 (1992)
  STANDARD  full automatic
FEATURES             Location/Qualifiers
     5'UTR           1..1133
     3'UTR           6481..6733
     CDS             1134..2858
                     /partial
                     /note="putative;  ORF1; has homology with nucleic acid
                     binding motif; putative cds"
                     /codon_start=1
                     /translation="TPELKRKPTSSCSRSPARRRRIQGHSDPLGHSTPGSFDPQGYFT
                     PPIANVGYRDGSTREIDPLGARATSVDCRTSLAPCSKLFAAEPRVALPKLSATGASKP
                     IAEPKAASATPAPELELLRATIQRLEEQNCAMKEQNAKLLEQITGMCQLLQEEKEEAK
                     RREEKLEAQMEKLAAAHQRDRDVLNSLLAAKVGGGQPSASPRQPPTPLPRRSSAQPQQ
                     QQQQQQRNQHEQEQPRASTSRAVMPPRSEALTAVRGDVVPELTYSEVVRRRYRGKATG
                     KPRSQQQPQQQQQQRQLQRQAVGIAQHQQQQQQRQPQRQAVAGSQQQQQERMQQQQQL
                     QRKRKPRPDIIEVSPSEGETWDGIYDKVRKAIRLDAAHSEMKGHIKQGRRTHARLLRM
                     ELSKTANAPLMLEGVRKIIGDAGVSRLVTEMGELLVVDIDPLATEEDIIAALDAKIGA
                     SAGVVSASIWELPDGSKRARIRLPVKSARQLEGLKLFLCDCVSKVRAAPPTPPERQRC
                     FRCLEMGHIASNCRSTADRQNLCIRCGLTGHKARSCQNEAKCALCGGAHHIGHSECAR
                     SAQRCSRP"
     CDS             2812..6480
                     /partial
                     /note="putative;  has homology with reverse transcriptase;
                     ORF2"
                     /codon_start=1
                     /translation="ATANVLVRPNDVPGPESSAGEPGHGRDAQNLVLQAAREEKADVL
                     ILSDVLRPPENNGRWAFSSCKAVAVVAVGELPIQRVWCSEAQGLVAAQIGGVVFISCY
                     APPSLNLAEFERFLEAIELEGFSHPQVVVAGDFNARHEEWGSPRTCDRGEELHGMVEQ
                     LGLIVINQGREYTFVGNGVALPSIVDVAFASPSIARPDTWVVSTSYTASDHRYVLYTV
                     GGTPPSPEQLQNHQQTAQQSSQQQQQQQQQQSLQQQQLSQQQQQQRQRQPSSQQGDSS
                     SQRRVRHAGRRWKASQFSPSSFLEALFAADFVQRASTQEGMIAAMLKACDETMQRVTR
                     LHQDPHRNIFWWSPLLARLRNNCEVARDRMLQTADLEERSIAAAEHRTARAELSRAIR
                     ASKRNLFQELIEIAEENAFGAGYRVVMSRLRGSRTPSEADRVVLERIISDLFPEHPPC
                     DWSQLSNVGSVEGATTTAGIAPVTDDELLLIASQMANHKAPGLDGIPNAAVKTAIMLF
                     PESSGFLYQDCLNRASFPAQWKRQRLVLLPKQGKPPGESSSYRPLCMLDALGKVLERL
                     ILNRLNEHLEEPSSPRLSDRQFGFRRGRSTVSAIQRVVEAGRTAMSFRRTNGRDNRFL
                     LVVALDVKNAFNTANWQSIASRLQAKGVPVGLQRMLRSYFEDRVLYFDTSEGPVVRHV
                     TAGVPQGSILGPTLWNIMYDGVLDVPLPPDVEVIGYADDLALLVPATTTDEVRARAEE
                     AVDQVQRWMQQHGLELAPAKTEAVLISSKKTPPQVTFRVGDVEVQSSRSIRYLGVQLQ
                     DHLKWRDHVTKVSEKASRVVAAVTRLMQNHSGPRTAKSRLLAYVAESVLRYAAPVWAE
                     ATQVRECRRMLQRVQRKAAIRVARAFRTVRYETATLLAGLVPICHLINEDARVHQQLL
                     APDRAATREDIRATERQNTIDCWQEEWDADALQQDASRHTRWTHRVIPSVGDWQSRKH
                     GDMTFHLAQVLSGHGFFRDYLCHNGFTSSPDCQLCVGVPETADDAFFECPRFAAVRQE
                     LLGEGGPDPVCPDTLQRHLLRDADSWSRICEGAKRITAQLQRAWDEERAALAVNVIER
                     QDEDAAELEAQRAEVRRARNERRNANRRAATARRREERRAGLPPTPPASPRTAQRRAA
                     LRERQARFRERRRNRRLLGMSGQAINNDDDGRERADLAAGPSGMRNRAIDEENEATDG
                     GLNAAEEAAVVEAEVASR"
BASE COUNT     1602 a   1879 c   2003 g   1249 t
ORIGIN      
        1 gagtgttcat cgagtagccg tcgagtgaag acggatgtaa acacgctccg acagagtttc
       61 ggaaaaaagt gtgtaaaacg gcctcggatc gctcggaaag tgttaaaaac gagtttagag
      121 cacccgtttt acctttagac ggtgttattt acccgaaaat cggtgatttt ttgtaaaagt
      181 gaaaaatcgt gtttttgtgt atacatttgc ccccccccgg tagcaccaaa tttccgggtg
      241 tgggaattaa gtgtaaaaat ctgcgatttt agtgccggaa acacttgtat ttaactaaat
      301 ggacgcttct gaagcgattc caagtgtttt ggaaacgatc cgtgcagcaa aaagtgaaaa
      361 aaacgcgaaa accaaaagtg tcgggggtgc taccgctggg gcatgtgtcc gcggtaaata
      421 acgaaaaaaa cagtaaatcg tgaataactc ggtgagtttt ggtcggattc gagtgcggtt
      481 ttcaccattg tgcgtgtctt tgtgcaaaca ataagaatca aacaaaaaaa cagtgaaaat
      541 cggtgaaaaa atttttgaca tttgtgagtg acagttcagt aatacccacg ggacaaattt
      601 ggccggggcg caattcccaa gggcaaaatt tgaattttcg gcccggtggc ggttggcggc
      661 ggaaccgagg gtgccgaaaa attgtcaaat ttgcaggggt ggtagagcaa gtaacgccga
      721 ctacgggaaa attattttcc cccctccccc ccctcccccc tcccccccag aggtcagaat
      781 agagtagggc gcccgataag agtcggataa ggtcgaggtc gcccgaaaat tctcattttt
      841 ggtagggtgg tagagcgtga ccccagcagt ccgggaaaat tattttcccc gctcccaccc
      901 ccccccccct cccagtgaaa aattttataa gtgtcaaaaa gtcggaaaag tggtccaaaa
      961 agggtggaat tccgggtcga gccgtttgga cgagtgaacg tgccgcgaaa atttgggagt
     1021 ggtgcggaat aattccccac gtgtgtgacg caccctcctg aattttttcc ccaccccctt
     1081 cccccctccc ccccgcccac cagggggcac aaattggacc tttttcgccc tgaacaccgg
     1141 agttgaagcg gaaaccgaca tcatcgtgca gcagatcacc agctaggcgg cgcagaatcc
     1201 agggtcattc cgaccccctg ggtcattcga cccccgggtc attcgacccc cagggttatt
     1261 ttaccccacc catcgcgaac gtcggttatc gcgatggaag cacccgggag atcgacccgc
     1321 tcggtgctag ggcgacgtcg gtggactgcc gcaccagctt ggctccttgc tccaagctct
     1381 ttgcggccga gccacgtgtt gcgcttccta agctaagcgc cacaggcgct agtaagccca
     1441 ttgccgagcc aaaagctgca tcagcgacac cggctccgga gctcgagttg ctcagagcta
     1501 caatacaacg gctcgaggag cagaactgtg cgatgaagga gcaaaacgca aaactcctgg
     1561 agcagataac cggcatgtgc caactgctgc aggaggaaaa ggaggaggca aagcgccgtg
     1621 aggagaagct cgaggcgcag atggagaagt tagccgccgc acatcaacgc gatcgagatg
     1681 tgctcaactc tctgctggcg gcaaaggttg gcggtggaca accgtcagct agtccacgtc
     1741 aacctccaac tccgttgccg cgccgatcct ctgcgcagcc gcagcagcag caacagcagc
     1801 agcagcggaa ccagcacgag caggagcagc cccgcgcgtc gacgtcgcgc gctgtcatgc
     1861 cgccgcgtag cgaggcattg acagccgtcc gcggagacgt cgtgccggag ttgacctaca
     1921 gcgaggtcgt gcggcgtaga tatcgcggca aagctacggg taagccacgc tcccagcagc
     1981 agccgcaaca gcagcagcag cagcgtcagc tacagcgaca ggcagtcggt atcgcgcagc
     2041 atcaacagca gcagcagcaa cgtcagccac agcgacaggc ggtcgctggc tcgcagcagc
     2101 aacagcagga gcgtatgcag cagcagcagc agctacagcg taagcgaaag ccgaggcctg
     2161 acatcatcga ggtgtctccc agcgaaggcg aaacctggga tggcatttac gacaaggtgc
     2221 gcaaagccat tcgtctggac gcggctcaca gcgaaatgaa agggcatatt aagcagggcc
     2281 gccgaactca tgctaggctg ctacgtatgg agctgagcaa gacagcaaac gctccgctta
     2341 tgctggaagg cgtccgcaaa atcatcggcg acgcaggcgt cagtcggctt gtcacagaaa
     2401 tgggtgagct gctggtagtc gatattgatc cccttgctac ggaggaagat atcattgctg
     2461 ccctcgatgc taagattggc gcaagtgctg gagttgtttc tgccagcatt tgggaactac
     2521 cggatggttc gaagcgagca cgcatccggc tacctgtgaa gtcggctcgg cagttggaag
     2581 gacttaaact gttcctgtgc gactgtgtga gcaaggttcg agcagcccca ccaacgcctc
     2641 cagagcgaca gcgctgtttt cgctgtctgg agatgggcca catcgcctcg aactgccgtt
     2701 ccaccgcaga tcggcagaat ctgtgcatcc gctgtgggct taccggacac aaagcacgat
     2761 cctgccagaa tgaggcaaag tgcgcactgt gcggtggcgc tcaccacata ggccacagcg
     2821 aatgtgctcg ttcggcccaa cgatgttccc ggccctgaaa gttctgcagg cgaacctggc
     2881 catggccgtg atgcccagaa cctggtgctg caagctgcca gagaggagaa agcagacgtg
     2941 ctcattctct ctgatgttct gcgcccacct gaaaacaacg gccggtgggc attcagcagc
     3001 tgcaaggcgg tagcggtggt agctgtcggt gagctaccaa tacagcgggt gtggtgcagt
     3061 gaagctcagg ggttggttgc agcgcagatc ggcggagtgg ttttcatcag ctgctatgct
     3121 ccaccaagcc ttaacctcgc agagttcgag cgcttcttgg aagcaataga actcgaaggc
     3181 ttctcccacc ctcaagtcgt cgtcgccggc gattttaacg ccagacatga ggagtggggc
     3241 agcccgagga cttgcgaccg cggggaagag ctgcacggaa tggtggagca gcttggccta
     3301 atcgtgatta atcaaggtcg ggaatacacg tttgttggca acggggtggc tctcccgagt
     3361 atagtggatg tggcattcgc gagcccgtcg atcgctcgcc ctgacacctg ggttgttagc
     3421 acaagctaca ccgcgtcaga ccaccgctat gttctctaca ccgtgggagg aacaccacca
     3481 tcccccgaac aactgcagaa ccatcagcag acagcgcagc agtcgtctca gcagcaacag
     3541 cagcagcagc aacagcagtc cttacaacag cagcagttat cacaacagca gcagcagcaa
     3601 cgacagcggc aaccatcgtc gcagcagggt gattcctcaa gccagaggcg tgtgcgtcac
     3661 gctggccgcc gatggaaagc ctcgcagttt tctccttcct cattcctcga ggcgctgttc
     3721 gctgcggact ttgtccaacg cgcatcgacc caggagggta tgatcgcagc catgctgaag
     3781 gcctgcgacg agacgatgca acgggttacc cgactgcacc aagacccgca tcggaacatc
     3841 ttttggtggt ctcccctcct ggctcgcctg aggaacaact gcgaggttgc ccgtgaccgg
     3901 atgctgcaga cggctgactt ggaggagcgc agcatagcag cagctgagca caggacagca
     3961 agggcggagc tcagccgagc aattcgagct agcaagcgga acttgttcca ggagctgatc
     4021 gaaattgcag aagagaatgc gttcggggca ggataccgtg tcgtcatgtc ccggctccgg
     4081 ggcagtcgga cgccttcaga agcggaccgg gtcgtcctcg aacgcattat atccgacctc
     4141 ttccctgagc atccgccctg cgactggtcg cagctgagca acgttggaag cgtcgaggga
     4201 gcaacaacaa cggcgggaat tgcaccggta acggacgacg agctgctgct catcgcgagc
     4261 cagatggcaa atcacaaagc accagggctc gatggcatcc cgaatgcggc agtgaagacg
     4321 gccatcatgt tgttcccgga gtcttccggg ttcctgtacc aggattgcct caaccgcgct
     4381 tcgtttccgg cgcagtggaa gaggcaacga ctggtgttgc tgccgaagca ggggaagcct
     4441 ccgggagaga gcagctcgta ccgacccctc tgcatgctcg acgcactggg gaaggtactt
     4501 gagcgcctca tcctgaatcg cctcaatgaa catctcgagg agccgtcttc accccgactg
     4561 tcggaccggc agttcggatt tcgtcgaggg cggtcgacag tgagcgccat ccagcgggtt
     4621 gttgaggccg gccgtaccgc catgtcgttc cggcgaacga acggccggga taaccgtttc
     4681 ttgcttgtgg tggcgttgga cgtgaagaac gccttcaaca cggccaactg gcaatccatt
     4741 gccagccgcc ttcaggcaaa aggtgttccc gtcggcctcc aacggatgct tcgaagctac
     4801 ttcgaggatc gtgtgctgta ctttgacacg agcgaaggcc ccgtcgtacg gcatgtaacc
     4861 gccggtgttc cacaggggtc catcctgggc ccaactctgt ggaacatcat gtatgacggg
     4921 gtgctggatg tgccgctacc tcccgacgtc gaagtcatcg gatacgcgga cgatctggcg
     4981 ctgttggtac ctgctaccac cacggacgag gttcgcgcga gagcagagga ggccgttgac
     5041 caggtccaac gttggatgca acagcacggt ctggagctgg ccccagccaa gactgaagcc
     5101 gtcctgatct caagcaagaa gactccgccg caggtgacat ttcgcgtcgg tgacgtggaa
     5161 gtccagtctt ctaggagcat caggtacttg ggcgtgcagc tccaagatca cctgaaatgg
     5221 cgagatcacg tcacgaaagt ctccgaaaag gcgtcgcgcg tggtggcagc tgtaacgcgc
     5281 ctcatgcaaa accacagcgg ccccaggacg gccaagtcaa ggctgctggc gtatgtggca
     5341 gaatcggtgt tgcggtatgc tgctcccgtc tgggctgagg caactcaggt gcgagagtgc
     5401 cgacggatgc tgcaacgagt tcagcgaaaa gcagccatca gggtggcacg ggcattccgt
     5461 accgtcaggt atgagacggc caccctactc gctggactcg taccgatatg ccacctcatc
     5521 aacgaggatg ctcgggttca ccaacaactc cttgctccag accgtgctgc aacgagggag
     5581 gacatccggg cgacggagcg gcagaacacc atcgactgct ggcaggagga atgggatgcc
     5641 gacgcactgc aacaggatgc tagccggcac acgcggtgga cgcaccgtgt aattccatcg
     5701 gtcggcgact ggcagtctag gaaacatgga gatatgactt tccatctggc acaggttttg
     5761 tccggacacg gatttttccg tgactacttg tgccacaatg gattcacgtc gtccccagac
     5821 tgccagttgt gcgtcggcgt cccagagacg gcggacgacg ccttcttcga gtgcccacgc
     5881 tttgcggcag ttcgacagga gctactcggc gagggaggtc cggaccctgt ctgtccggac
     5941 accctccagc ggcacttgtt gcgcgacgcc gatagctgga gtcgtatttg cgaaggcgcg
     6001 aagcgaataa cggcccaact gcagcgagcg tgggacgagg agcgggcagc attggctgtt
     6061 aacgtcatcg agcgtcagga cgaagacgca gcagagctgg aggcccaacg cgcggaagtg
     6121 cggcgggccc gtaacgagcg acgcaacgcc aaccggcgag cagcaacagc acgccggcgg
     6181 gaagaacgtc gagctggact tcccccaacc ccaccagctt caccacggac cgctcagcga
     6241 cgtgcagcgc ttcgtgagcg tcaagcgcgg ttcagggaga ggagacgaaa ccgtcgtctt
     6301 ctcgggatgt ccggccaggc gataaacaat gacgatgacg gccgagaacg cgcggattta
     6361 gcagccggac catctggtat gcgcaaccgc gcaatcgacg aggaaaacga ggccacggac
     6421 ggtggcctga acgccgcgga agaagccgcc gtggtcgagg cagaagttgc ctcccgctag
     6481 gcgtggtatg cacgtaaaaa cagcgacgca tcgagcgtga aaaagcgccc tatttagggg
     6541 aatgagtgaa tttttcggtt gaatttagaa atagaaataa aacatggaag gtgcttttcg
     6601 cacggacaaa aggttggcca ttaagccatg aaaccccctg cagggtaagc cctcgcgggt
     6661 aaaatgtagg ggagcgggag ggtttaattt tgaaacaaaa taaaaaaccc gtttataaaa
     6721 aaaaaaaaaa aaa
//