From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: capsid protein [Nudaurelia capensis omega virus, Genomic RNA, 2448
Date: 6 Jan 93 07:08:52 GMT
Distribution: bionet
Checksum: 44752 6

LOCUS       S112777      2448 bp    RNA             UNA       21-DEC-1992
DEFINITION  capsid protein [Nudaurelia capensis omega virus, Genomic RNA, 2448
            nt]
ACCESSION   S43937
KEYWORDS    .
SOURCE      Nudaurelia capensis omega virus
  ORGANISM  Unclassified.
            Unclassified.
REFERENCE   1  (bases 1 to 2448)
  AUTHORS   Agrawal,D.K. and Johnson,J.E.
  TITLE     Sequence and analysis of the capsid protein of Nudaurelia capensis
            omega virus, an insect virus with T = 4 icosahedral symmetry.
  JOURNAL   Virology 190, 806-814 (1992)
  STANDARD  full automatic
COMMENT     This entry [NCBI gibbsq 112777] was created by the journal scanning
            component of NCBI/GenBank at the National Library of Medicine.
            This sequence comes from Fig. 3.  Map location: segment RNA2.
FEATURES             Location/Qualifiers
     CDS             367..2301
                     /note="mismatches(20).  CP;  For the protein sequence
                     (NCBI gibbsq 112779):  This sequence comes from Fig. 3.
                     Author-given protein sequence is in conflict with the
                     conceptual translation"
                     /product="capsid protein"
                     /codon_start=1
                     /translation="MDSNSASGKRRSRNVRIARQARGRRARSANTVNVAPKQRANNID
                     NVTAAAQELGQSLDANVITFPTNVATMPEFRSWARGKLDIDQDSIGWYFKYLDPAGAT
                     ESARAVGEYSKIPDGLVKFSVDAEIREIYNEECPTVSDASIPLDGAQWSLSIISYPMF
                     RTAYFAVANVDNKEISLDVTNDLIVWLNNLASWRDVVDSGQWFTFSDDPTWFVRIRVL
                     HPTYDLPDPTEGLLRTCSDYRLTYKSITCEANMPTLVDQGFWIGGHYALTPIATTQNA
                     VEGSGFEHPFNVTRPGIAAGVTLTWASMPPGGSAPSGDPAWIPDSTTQFQWRHGGFDA
                     PTGVITYTIPRGYTMQYFDTTTNEWNGFANPDDVVTFGQTGGAAGTNATITITAPTVT
                     LTILATTTSAANVINFRNLDAETTAASNRSEVPLPPLTFGQTAPNNPKIEQTLVKDTL
                     GSYLVHSKMRNPVFQLTPASSFGAISFTNPGFDRNLDLPGFGGIRDSLDVNMSTAVCH
                     FRSLSKSCSIVTKTYQGWEGVTNVNTPFGQFAHSGLLKNDEILCLADDLATRLTGVYG
                     ATDNFAAAVLAFAANMLTSVLKSEATTSVIKELGNQATGLANQGLARLPGLLASIPGK
                     IAARVRARRDRRRAARMNNN"
BASE COUNT      547 a    715 c    563 g    623 t
ORIGIN      
        1 tttctctctc ttaccaagtg cggtaaaaca aacaaagaaa ggaaatcgag tgacaacggc
       61 ctctacacac ctcacgtccg tgaccaccgg attatacgtc gcccgcgcac ggcgcctttt
      121 ccgaccactc gtgagagtcg ctggacagct gtccgtgacc acccgattgc agtcaaatta
      181 ctgctttcgg accactaagt ttgtcctcga acgacataca ttcgttcaca cactgtctta
      241 gcgagaccta aactcgcctt gatagacagc tcatgacaga tcgttgccgg cgcatctgtt
      301 tcatctacct cctggctatt ccgttgctat tatccctccc gagcaagacg gctgggaact
      361 tttagaatgg acagtaactc agcctccggc aagcgacgat cgcgcaatgt gcggattgca
      421 gccaacaccg tcaacgtcgc tccgaagcaa cgccaagcac gcggccgccg agcccgttca
      481 cgtgccaaca acatcgacaa tgtcactgcc gcagctcagg aactcggcca atctcttgac
      541 gcaaacgtta ttaccttccc aaccaatgtt gcaaccatgc ccgaattccg tagctgggcg
      601 cgtggtaaac ttgacatcga ccaggactcc attggttggt atttcaaata cctcgaccct
      661 gctggcgcca cggagtccgc tcgtgccgtc ggtgagtact ccaaaatacc tgacggcctc
      721 gtcaaatttt ctgtcgacgc cgagataaga gagatataca atgaggagtg ccctaccgtc
      781 tccgacgctt ctataccact ggacggcgcc caatggagct tgtctatcat ctcctaccct
      841 atgtttcgca ctgcttactt tgctgtcgcg aacgtggata ataaggagat atcccttgac
      901 gtcacgaacg atcttatcgt ttggcttaac aatctcgcta gttggcgtga cgttgttgat
      961 agcggacagt ggttcacttt ttcggacgac ccgacttggt tcgtccgcat tcgtgtgcta
     1021 caccccacat acgatcttcc tgatccgacc gagggcttac ttcgtacgtg ctccgactac
     1081 cgacttactt ataagtcgat aacttgtgag gctaacatgc ccacgctcgt tgaccaggga
     1141 ttttggatcg gaggacatta cgctcttact ccgatcgcca ccacacagaa tgcggttgag
     1201 ggttcgggtt ttgagcaccc tttcaacgtc acccgaccgg gtatcgcagc gggtgttacc
     1261 ctcacttggg cgtcaatgcc gccgggtggg agtgctccgt ccggtgatcc tgcttggata
     1321 cccgattcca ccacgcagtt ccagtggcgt catggaggtt ttgacgctcc caccggcgtc
     1381 atcacttata ctatcccgcg aggctacacc atgcaatact ttgacactac cacgaatgaa
     1441 tggaatgggt ttgccaatcc agatgacgtg gttacattcg gccaaactgg tggtgcggcc
     1501 ggaactaacg ccaccattac gatcactgca cctactgtta ctctcaccat tctcgccacg
     1561 accacttctg ctgctaacgt cattaacttc cggaatttgg acgctgaaac taccgctgct
     1621 tctaatcgca gtgaagtgcc tctgccgcct ctaacttttg gtcaaactgc gccgaacaac
     1681 ccgaagattg aacagactct cgtcaaggac actttgggtt cataccttgt acatagcaag
     1741 atgcgcaacc cggttttcca actcacgcct gcatcttctt ttggcgccat cagtttcacg
     1801 aatcccgggt ttgaccgcaa cctcgatctt cctggttttg gcggcatacg tgactccctt
     1861 gatgtcaaca tgtccaccgc tgtgtgccat tttcgttctt tgtctaagtc atgttctatt
     1921 gtcactaaga cgtaccaagg ttgggaaggt gttactaatg ttaacacccc ttttggtcaa
     1981 tttgctcaca gcgggctgct caagaatgac gagattcttt gccttgcaga cgacttagct
     2041 acccgtctta caggcgttta tggtgcgacg gataattttg ctgctgcggt cctcgctttc
     2101 gccgcaaata tgctcacttc cgtcttgaag tcggaagcta ccacttcagt tattaaagag
     2161 ctcggcaatc aagctactgg acttgccaac cagggccttg cccgtttacc gggtcttctt
     2221 gcctcgatac cgggcaaaat tgctgcacgt gtccgcgcta gacgtgaccg tcgacgtgct
     2281 gcacgaatga acaataatta acacgtgcgc acatttcccg ttttaggaaa cgggtggtac
     2341 tgatcaacca tgaaacctgg ctatctgatc taataaactc tggtgagttt cctgtcacac
     2401 acgacagttt tgctgcggtt cgattccaat cccaagcagc gcggggca
//