From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Rhesus papillomavirus type 1, complete genome.
Date: 27 Jan 93 05:51:11 GMT
Distribution: bionet
Checksum: 41613 15

LOCUS       RPLCG        8026 bp ds-DNA             VRL       26-JAN-1993
DEFINITION  Rhesus papillomavirus type 1, complete genome.
ACCESSION   M60184 M37718
KEYWORDS    complete genome.
SOURCE      Rhesus papilloma virus type 1 DNA, isolated from Macaca mulatta.
  ORGANISM  Rhesus papillomavirus type 1
            Viridae; ds-DNA nonenveloped viruses; Papovaviridae.
REFERENCE   1  (bases 1 to 8026)
  AUTHORS   Ostrow,R.S., LaBresh,K.V. and Faras,A.J.
  TITLE     Characterzation of the complete RhPV 1 genomic sequence and an
            integration locus from a metastatic tumor
  JOURNAL   Virology 181, 424-429 (1991)
  STANDARD  full automatic
FEATURES             Location/Qualifiers
     CDS             22..597
                     /gene="E6"
                     /codon_start=1
                     /translation="MKKGVTENGATESGAYKKLLKLWFFVAMVDCPGEPNELPRTIHE
                     LCEQREETLHELQLECVYCLKELTRIEVYDFARWDLRLVHRQGKPYGVCPICLRFYSK
                     IRKYRRYEYSIYGCTLERRTRKQLVEVLIRCYCCQKPLCPIEKQRHVDQGQRFHRIAG
                     QWTGRCLMCWRPTVPETQPDTDQQGSSFLQA"
     CDS             594..935
                     /gene="E7"
                     /codon_start=1
                     /translation="MIGPKPTLEDIVLDLQPFPQPQPVDLMCYEQLSDSSEDEDEVDH
                     HHNNQQQHHQHARPEVPEDGDCYRIVSDCYSCGKPLRLVVVSSHEELRVLEDLLMGTL
                     DIVCPSCASRV"
     CDS             941..2818
                     /gene="E1"
                     /codon_start=1
                     /translation="MDPEGTPGEGVGCTGWFNVEAIVERKTGDVVSEDEDDTEDTGID
                     LVDFIDDTCGSVQTGDEAPGALLHAQETQAHAEAVQVLKRKFVGSPAVSPLGNYNPCV
                     DRDLSPRLNEISLNQGSGQAKRRLFLPDSGYGNTEVETSLLQVAGGGGQDVQAGGKEN
                     TRPDDGGGDATQLLRCSNLKATLLSKFKSVYGVSFSELVRSFKSDRTTCADWVVGAAG
                     VHHSVAEGLKQLIQPFCSYAHIQCLTCDWGVYLLLLARFKCGKNRLTVSKCMSTLLNV
                     QETHMLIEPPKLRSAAAALYWYRTGISNVSEVIGETPEWITRQTMFQHGLEDSIFDLS
                     EMVQWAYDHDFTDDSVIAYEYAQLAGIDSNAAAFLKSNAQAKYVKDCATMCRHYKRAE
                     RQQMTMSQWIKQRCEKTDDGGDWRPIVQFLRYQGVEFIAFLAALKLFLKGIPKKNCIV
                     LFGPPNTGKSYFGMSLIHFLQGSIISYVNSNSHFWLQPLADAKVAMLDDATPQCWSYI
                     DNYLRNALDGNPISVDRKHKNLVQMKCPPLLITSNTNAGQDDRWMYLHSRMVVFTFEQ
                     PFPFDQNGNPVYELNDKNWKSFFSRTWSRLDLQEEEETENDGSTCRAFKCVAGQNLRT
                     V"
     CDS             2757..3857
                     /gene="E2"
                     /codon_start=1
                     /translation="MMEALAERLSALQDRILELYEADSKDLKDQIEHWKCVRQECAVL
                     YKAREVGFSHLNHQVVPSLTVSRAKAHKAIEVQLALESLQNSEYNNEEWTLQDASLEM
                     WHTEPKGCFKKTGVPVTVLFDCDKDNTMEYVLWGHIYVWGDNGWVKTFGEADNWGLHY
                     TVAGEKVYYVQFYEDAKKYGHGNGNGDGYEWEVHVGGTVMHYSDSVSSATHCDKLPTV
                     EIVSGLQHINPSPPPANPSAKENVWSSPAKRVRRSDSGGDPVRALDGKSRSVLCGSAH
                     NNATGSSGDSDYTPIVHLKGESNCLKCLRFRLGKHKHLYINISSTWRWANHASEKAIV
                     TVTFANELQRQQFLNTVKIPSTVTLSQGVMTV"
     CDS             3940..4413
                     /gene="E5"
                     /partial
                     /note="putative;  5' end undetermined"
                     /codon_start=1
                     /translation="IVVCIGTQWSHFKPVHTLNSIQVLCKANCCCYACKPPPFCCFWL
                     CFCCCFCLALCFVHLLSRCFCVFPVCLSVAAYAVVLGVHSEPVCSFWSVFVLFFNPVA
                     FDTPACPQCGLQQNDVNTAHRHVIISYFAIVAVNIYFVLALLVGAAFKATSRART"
     CDS             4468..5868
                     /gene="L2"
                     /codon_start=1
                     /translation="MKHAHLSRRKRAAPRPPGGRQKRASATQLYQTCKAAGTCPPDVI
                     PKVEGTTVADQILKYGSMGVYFGGLGIGSGAGTGGRSGYVPLGSRPASIPEPLPRPPV
                     TIEPVGPSDPSIVSLLEESRLIEAGVPAPTFPTHGGFEISTSEVSTPAVLDVSSGGSD
                     VHVSVTSFTNPTFTEPSVLRPPPPVEASGRLVISASSVSTHSYEEIPMDTFVITGDHN
                     YNTTSTPIPGSRAPARLGLYGRATQQVRVVDPAFITTPARLVTYDNPAYEGVDDATLQ
                     FSHSDIHQPPDPDFLDIVALHRPALTSRKGTVRFSRLGQRATLTTRSGKRIGAKVHFY
                     HDLSPIAPAESIELQPLSSQGELYDIYADVDGQEDAAAVANTPLNSNSSGIASPWNTT
                     VPLSAGADVTLQSGPDVSLDAPVAESPVHPGVPLRPSAHIILYGGDFYLHPSYLGIRR
                     KRKRMHNFFSDVYVAA"
     CDS             6289..7353
                     /gene="L1"
                     /codon_start=1
                     /translation="MDYKQTQLCMLGCKPPVGEHWGKGNPCTTGAAGDCPALELVNSV
                     IQDGDMVDTGYGAMDFNALQANKSDVPIDICTSVCKYPDYLKMASDPYGDSLFFYLRR
                     EQMFVRHLFNRAGTMGDSVPDDLYIKGSGSNVKLASHVFYPTPSGSMVTSDAQLFNKP
                     YWLQKAQGHNNGICWGNQVFLTVVDTTRSTNMTLCASTASTVTTPYNNESFKEYLRHV
                     EEFDLQFIFQLCKVTLNTEVMAYIHSMDASILEDWNFGLQPPPSGSLQDTYRFVTSAA
                     ITCQKPAPPKEKEDPLAKYTFWEVDLKEKFSADLDQFPLGRKFLLQAGMRARPTLRAP
                     KRTASSTSSSSPRKRKRTKR"
BASE COUNT     2118 a   1789 c   2067 g   2052 t
ORIGIN      
        1 tacttaacta tactcctgag tatgaaaaag ggtgtaaccg aaaacggtgc aaccgaaagc
       61 ggtgcatata aaaagctcct gaaactttgg ttttttgtgg caatggtaga ctgccctggc
      121 gagccaaacg aattgcccag gaccattcac gaactatgcg agcagcgtga ggagaccctg
      181 cacgagcttc aattggagtg cgtgtattgc ctgaaggaac taacacgcat tgaggtatat
      241 gattttgcac ggtgggattt aagattggtg catagacaag gcaagccata cggggtatgt
      301 cccatatgct tgaggtttta ctcaaaaatt cgaaaatata ggcgatacga gtattcaata
      361 tatgggtgta ctttagagcg tagaactaga aaacagttag tggaggtatt aataaggtgt
      421 tattgttgtc agaagcccct gtgtcccatt gaaaagcaaa gacacgtgga ccaaggacaa
      481 aggttccaca gaatagcggg acagtggacc ggaaggtgct tgatgtgctg gagaccaaca
      541 gtacctgaga cccagccaga cactgatcaa cagggcagta gtttcttgca agcatgattg
      601 ggcctaaacc taccctcgag gacattgtcc tagatttgca accatttcca caaccgcaac
      661 cggtcgacct tatgtgttat gagcaattat ctgacagctc agaggatgag gatgaagtag
      721 accatcatca caataatcag cagcagcatc atcagcacgc cagacctgaa gtaccagagg
      781 atggtgattg ttatagaatt gtgagcgatt gttacagctg tggcaagcca ctgaggctgg
      841 ttgtggttag tagccacgaa gagttacgtg tgctagagga cctgctgatg ggcacgcttg
      901 acattgtgtg tcccagctgt gccagcagag tgtaactgca atggaccctg aaggtacacc
      961 aggggaaggg gtggggtgta cggggtggtt taatgtggag gctatagtag aacgtaaaac
     1021 gggggatgtg gtgtcagagg acgaagacga cacagaggat acagggatag atttggtaga
     1081 ctttatagat gacacatgtg gaagtgtgca gacaggggac gaggcacctg gggcgttgtt
     1141 gcacgcacag gaaacacaag cgcatgcaga ggcagtgcag gttttaaaac gaaagtttgt
     1201 aggcagtccg gcagttagtc cgttgggaaa ctacaatccc tgtgtagaca gggatttaag
     1261 tcccagatta aatgaaataa gtttaaacca aggcagcgga caggcaaaac ggagactgtt
     1321 tttgccggac agcggttatg gcaatactga agtggaaacg tcgctattgc aggtagcagg
     1381 ggggggcggc caggatgtac aggcaggggg gaaggaaaac acacggccag atgacggggg
     1441 gggggatgcc acgcagctgc tccgttgcag caacttaaaa gccactttgc tgagtaaatt
     1501 taaatctgtg tatggagtta gcttttcaga gttggtgcga agctttaaaa gcgacaggac
     1561 cacgtgcgct gactgggtgg tgggggcagc gggggtccat catagcgtgg cagaggggtt
     1621 aaagcagctc attcagcctt tttgcagtta tgcacacatc cagtgcctta catgcgactg
     1681 gggggtgtac ctgctactgc tggcacggtt taagtgtggc aaaaacagac taacagtttc
     1741 taaatgcatg agcacgctgt taaatgtgca agaaacgcac atgctaattg aaccaccgaa
     1801 gctgcgtagc gcagcagcag ctctatactg gtacaggaca ggtatatcaa atgtaagtga
     1861 agtaataggg gaaacacctg agtggattac aagacagaca atgtttcaac atggcctgga
     1921 ggacagtata tttgatttgt ctgaaatggt gcagtgggca tacgaccacg actttacaga
     1981 tgacagtgtg atagcgtacg agtatgcaca gctggcaggg atagacagca acgctgctgc
     2041 atttttaaaa agtaatgcac aggccaaata tgtgaaggat tgtgccacta tgtgtaggca
     2101 ctacaaaaga gccgaaaggc aacagatgac tatgtcacag tggataaaac aaaggtgtga
     2161 aaaaactgat gatggagggg actggaggcc aatagtgcag tttttaaggt accaaggggt
     2221 ggagtttata gcatttttag cagctttaaa gctgtttttg aagggcattc caaaaaaaaa
     2281 ctgcatagtg ttatttggac cgccaaatac aggtaaatcc tactttggca tgagcttaat
     2341 acatttcttg caagggtcta tcatttcata tgtaaattcc aacagtcact tttggttgca
     2401 gcctctggca gatgctaagg tggccatgtt ggatgatgca actcctcagt gctggtccta
     2461 tatagataat tatttaagga acgcactgga cgggaacccc attagtgttg atagaaaaca
     2521 taaaaatctt gtacagatga agtgcccccc attgcttatt acctcaaaca ccaatgcagg
     2581 tcaggatgac aggtggatgt atttgcacag tagaatggtt gtgtttacat ttgaacagcc
     2641 atttccattt gatcagaacg gtaatccagt ttatgagtta aatgataaaa actggaaatc
     2701 ctttttctca aggacatggt ccagattaga tttacaagag gaagaggaga cggaaaatga
     2761 tggaagcact tgcagagcgt ttaagtgcgt tgcaggacag aatcttagaa ctgtatgaag
     2821 ctgatagcaa ggacttaaaa gaccaaatag agcactggaa atgtgtgcgc caagaatgtg
     2881 cagtgttgta taaggcacgg gaagtagggt tttcccacct gaaccatcag gtggtgccat
     2941 cattaactgt gtcacgggct aaagcccaca aagcaattga agtgcagctg gcattagaga
     3001 gtttacaaaa ttcggagtat aacaatgagg agtggacgct gcaagatgcc agcttggaga
     3061 tgtggcacac agaacctaag ggatgcttca aaaaaacagg tgttccagta acagttttgt
     3121 ttgactgtga caaagacaat accatggagt atgtgctgtg gggacacata tatgtgtggg
     3181 gggacaatgg atgggtgaag acattcggtg aggcggacaa ctggggtctg cactataccg
     3241 ttgctgggga aaaggtgtac tatgtgcagt tttatgagga tgctaaaaaa tatggacatg
     3301 gaaatggaaa tggagatggc tatgagtggg aggtgcatgt tggtgggacg gtaatgcatt
     3361 attctgactc tgtgtctagc gctacccact gcgacaaact acccactgtt gaaattgtta
     3421 gcggactgca acacatcaac ccatcacccc cccccgccaa ccccagcgcc aaggaaaacg
     3481 tgtggtcatc gcctgcaaag cgagtgcgtc ggtcagactc aggtggagat ccagtgcggg
     3541 ccttggacgg taaaagccgg tcagtccttt gtggatctgc acacaacaac gctacaggga
     3601 gttccggtga cagtgactat acgcctatag tgcacctaaa aggtgaatct aactgtttga
     3661 agtgtttgcg gttcagactg ggaaagcata agcacctgta tattaatata tcgtccacct
     3721 ggaggtgggc aaaccatgca agtgagaaag caattgtaac tgtgacattt gcaaatgagc
     3781 ttcaaagaca acagttttta aacactgtaa aaataccttc tactgtaact ctgtcacaag
     3841 gagtaatgac tgtgtagtgt gcattggcac acagggtttt gtattttttt ttttacaagt
     3901 actgtttgta attaattttg tatattgact gtatattgaa ttgtggtgtg cattggcaca
     3961 cagtggtctc atttcaagcc tgtacataca ttgaacagta tccaggtact gtgtaaagcc
     4021 aattgttgct gctacgcttg taaaccgcca ccattctgct gtttctggtt gtgtttttgc
     4081 tgctgttttt gcttggcctt gtgttttgtg cacttgttga gtcgctgctt ctgtgttttt
     4141 ccggtatgcc tcagtgttgc tgcttatgct gttgttctgg gtgtccatag tgaacccgtt
     4201 tgcagctttt ggtctgtgtt tgttttgttt tttaaccccg ttgcttttga tacacctgca
     4261 tgccctcagt gtggtttaca gcagaatgat gtaaatactg cacatagaca tgttattatc
     4321 agttattttg ctattgttgc tgttaatatt tactttgttt tggcactact tgttggtgct
     4381 gcgtttaaag ccaccagcag ggcgcgcacg taaatgtaaa cagctgagac ggcggcgcag
     4441 ataataaacg tcacacaata aagcgtcatg aagcatgcac acttgtcgcg gcgcaagcga
     4501 gcagccccgc gcccacctgg tgggcggcaa aagcgtgcat ctgccacgca gctgtaccaa
     4561 acctgcaagg cggcaggcac atgccccccc gatgttatcc ctaaggtgga aggcacaacc
     4621 gtagcagatc aaattttaaa gtatggcagc atgggtgtat actttggggg tttgggcatt
     4681 ggctctggtg ctggcacggg cggaagaagc ggctacgtgc ccctaggttc acgtcccgca
     4741 tccattcccg agccgttgcc acgaccacca gtaacaattg agcctgtggg cccttccgat
     4801 ccctccattg tgtcattgct ggaagagtcc agactaatag aggcaggtgt tccagccccc
     4861 acattcccca ctcatggggg gtttgaaatt agcacatctg aagttagcac acccgctgtc
     4921 ctggatgtgt ctagcggtgg ctctgatgtg cacgttagtg tgacctcctt tacaaaccct
     4981 acctttactg agccatctgt gctgcgaccc ccgccccccg tagaggcgtc tggacgcctg
     5041 gtaatctctg catcctctgt cagcacgcat agctacgaag aaatacccat ggacacattt
     5101 gtaataactg gagaccacaa ctataacaca accagcacac ccattcctgg ttcacgtgcc
     5161 cctgcacgac ttggtctata tggacgtgct acccagcaag tgcgggtggt ggatcctgca
     5221 tttataacca cccctgcgcg actggtgaca tatgacaacc ctgcatatga gggtgtggac
     5281 gatgccaccc tgcaattttc ccactctgac attcaccagc cgccagatcc tgacttcctt
     5341 gacattgtgg cattgcacag gcccgccttg acctcacgta agggcaccgt gcgctttagc
     5401 cgattaggcc agcgggcaac actaaccacg cgcagtggta agcgtattgg ggccaaggtg
     5461 catttctatc atgacctcag tcccattgcc cctgcagaaa gcatcgagtt gcagcccctg
     5521 tcatctcagg gagagctgta tgacatatat gcagatgtag acgggcaaga ggacgctgca
     5581 gctgtggcta acaccccatt aaacagcaac agcagtggca ttgcaagccc ctggaacacc
     5641 acagtgccac tcagtgcagg ggcggacgtg acgctgcagt ccggccccga cgtgtccctg
     5701 gatgcaccag tggctgaatc gcctgtgcac cctggagtgc ctctaaggcc ttctgcacat
     5761 attattctgt acgggggaga cttttatttg caccctagct acctcggtat tcgcaggaaa
     5821 cgtaaacgca tgcacaattt cttttcagat gtctatgtgg cggcctagtg actccaaggt
     5881 ctacctacca cctgtcctgt gtctaaggtg gtcagcacgg atgaatatgt ctctcgcaca
     5941 agcatatact atcacgctgg cagttccaga cttctggctg ttggacatcc ctactatgct
     6001 gtaaagaagg gcaacaacaa agtgtcagtg cccaaggttt ctggtttaca ataccgagtg
     6061 tttcgagtgc gtttgcctga ccccaataag tttggccttc cagatgctaa cttttatgac
     6121 cctaacacac agcgccttgt gtgggcctgt ttaggcgtgg aggtggggcg tggacagcca
     6181 ctgggagtgg gcaccagtgg tcatccactg ctgaacaaac tagatgacac ggaaaatggc
     6241 cctaaagtgg ccgggggaca aggagcagat aacagggaat gcgtgtcaat ggactacaag
     6301 caaacacagc tgtgcatgct aggatgcaag ccccctgtgg gtgagcattg gggaaaagga
     6361 aatccttgca ccactggcgc tgcaggtgac tgccctgcac ttgagcttgt taactcagtt
     6421 atacaggatg gggacatggt tgatacaggg tatggcgcta tggactttaa tgcactgcag
     6481 gccaacaaat cagatgttcc tatagacata tgcactagcg tgtgcaaata ccctgactat
     6541 ttaaaaatgg catcagatcc ctatggcgac agcttgtttt tttacctgcg aagggagcaa
     6601 atgtttgtca gacacctgtt taacagagct ggcacaatgg gtgacagtgt ccctgatgac
     6661 ttgtatatta aaggcagtgg aagcaatgtc aagcttgcca gccacgtgtt ttaccccaca
     6721 cctagtggct caatggtgac atctgatgcc caattattta acaagccata ctggttacag
     6781 aaagcccagg gccataacaa tggcatctgt tggggcaacc aagtgttcct tactgtagtt
     6841 gacaccacta ggagcacaaa catgacactg tgtgcatcca ctgcctccac agttactaca
     6901 ccatataata atgagagttt taaagagtac ctgcgacatg tggaggagtt tgatttgcaa
     6961 tttatatttc agctgtgcaa ggtaaccctg aacactgaag taatggccta catacacagc
     7021 atggatgcca gcatactgga ggactggaac tttggtttgc agcctcctcc gtctggctcc
     7081 ttgcaggaca cctataggtt tgtgacgtct gccgccatca cctgtcaaaa acctgcaccc
     7141 cccaaagaaa aggaagaccc gttggctaag tatacctttt gggaggtgga tttaaaggaa
     7201 aagttttctg cagatttaga ccaatttccc ttaggccgca aatttttgct gcaagctggc
     7261 atgcgtgcac gccctaccct gcgcgccccc aaacgcacag cctcatctac ctcatcttcc
     7321 agcccccgca aacgcaaacg caccaaacgc taacgttgct tatatttatg ttgttgtacc
     7381 cagtgtgcat gatttatgta tgtgtgcatg ttgtacgtga ttttgtattt cctgtgttgt
     7441 gcgtgtcact gttttgtgtt gttgcgtgag tgtgttgcac ttatgtgttt attaaagtat
     7501 gcgtggtcgc acccgagtga gtaactgtgt gtgtccggcg tgtagtttct gtcacatgca
     7561 tgcatgcaca cccaaacact gttgccactg cctttaacag cttgcctgct gcacttccat
     7621 tttgaaccct tctccatttt ccctgcaaac cctccatttt atggtctcga ccggtttcgg
     7681 tcgcgcttgg cacgcatttt gggcaaacaa aaccacaaca ctgctaatcc tctggcttcc
     7741 tgcctctcct actgctgcat acctgtggtt gtgctttggc gctccctggt gactcactgt
     7801 ctctgcaaac aaaaatttgc acacacactt aatccaaccc tctttgtaca aaatgctttt
     7861 ggcagtacat ttctaagagt tactcatgct aattgcatag ttggccacaa tttcagggtt
     7921 ggattgccaa tactatgtcc ttttaaatgt gattaatttt caaaatgttc ttgcaggtgt
     7981 gtgtgaccgg gatcggtcaa actttcacaa gcatttttta tagtaa
//