From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: San Miguel sea lion virus RNA polymerase gene, 5' end and capsid
Date: 24 Jul 92 10:10:05 GMT
Distribution: bionet
Checksum: 21012     6

LOCUS       SMS4POLCAP   2744 bp ss-RNA             VRL       24-JUL-1992
DEFINITION  San Miguel sea lion virus RNA polymerase gene, 5' end and capsid
            protein gene, complete cds.
ACCESSION   M87482
KEYWORDS    RNA polymerase; capsid protein.
SOURCE      San Miguel sea lion virus (serotype 4) cDNA to genomic RNA.
  ORGANISM  San Miguel sea lion virus
            Viridae; ss-RNA nonenveloped viruses; Caliciviridae.
REFERENCE   1  (bases 1 to 2744)
  AUTHORS   Neill,J.D.
  TITLE     Nucleotide sequence of the capsid protein gene of two serotypes of
            San Miguel sea lion virus: Identification of amino acid sequences
            among calicivirus capsid proteins
  JOURNAL   Virus Res. 24, 221-222 (1992)
  STANDARD  full automatic
FEATURES             Location/Qualifiers
     CDS             <1..120
                     /product="RNA polymerase"
                     /codon_start=1
                     /translation="EFHHAVAAYNGYFNGTEGQPNQIAFASGGLGLSSEVFEN"
     CDS             126..2237
                     /product="capsid protein"
                     /gene="capsid protein precursor gene"
                     /codon_start=1
                     /translation="MATTHTLLSFDDLEFLLHRKDLTDLYGERCGTLNLVINPYELFL
                     PDELDDDCCDDPFNCCFPDVYASIGTEYSYIDPPELIHEEHCATNGTWPNGDPCEPIL
                     PPFTITGTHHYYATKPGEVVSGILSKLGSSWDPSLRSTADVSNSFTFRAESDGPGSAE
                     IVTEEQGTVVQQQPAPAPTALATLATASTGKSVEQEWMTFFSYHTSINWSTVESQGKI
                     LYSQALNPSINPYLDHIAKLYSTWSGGIDVRFTVSGSGVFGGKLAALLVPPGVEPIES
                     VSMLQYPHVLFDARQTEPVIFTIPDIRKTLFHSMDETDTTKLVINPYENGVENKTTCS
                     ITVETRPSADFTFALLKPPGSLIKHGSIPSDLIPRNSAHWMGNRWWSTISGFSVQPRV
                     FQSNRHFDFDSTTTGWSTPYYVPIEIKIQGKVGSNNKWFHVIDTDKALVPGIPDGWPD
                     TTIPDETKATNGNFSYGESYRAGSTTIKPNENSTHFKGTYICGTLSTVEIPENDEQQI
                     KTEAEKKSQTMYVVTADFKDTIVKPQHKISPQKLVVYFDGPEKDLTMSATLSPLGYTL
                     VDEQPVGSVSSRVVRIATLPEAFTQGGNYPIFYVNKIKVGYFDRATTNCYNSQILMTS
                     QRLAEGNYNLPPDSLAVYRITDSSSQWFDIGINHDGFSYVGLSDLPNDLSFPLTSTFM
                     GVQLARVKLASKVKAHTITAK"
     CDS             2234..2566
                     /function="unknown"
                     /note="ORF"
                     /codon_start=1
                     /translation="MNYANFGLDFLNSVANAVVEGKKLDLASKGLQLKSRALDTERAF
                     NYDRLAFEKHKFETNNDLKIYGDAMRISALRAAGLRINPYSNGRQIYQDEADLANLHS
                     YYSFYKTD"
     3'UTR           2567..2744
BASE COUNT      772 a    707 c    555 g    710 t
ORIGIN
        1 gaattccacc acgctgttgc agcgtataac gggtatttca atggtactga gggccaacca
       61 aaccagatcg cattcgcgag tggtggactt ggactcagta gtgaggtgtt tgagaattag
      121 ccactatggc tactactcac acgcttctgt cgtttgacga cctcgaattt ctcttacaca
      181 gaaaggacct aaccgatctc tacggagaac ggtgtggtac cctcaatctg gtcatcaacc
      241 cttatgaact tttcttgcct gatgaacttg atgatgattg ctgtgatgat cctttcaact
      301 gttgcttccc tgatgtctat gcctctatag gaactgagta tagctacatt gatcctcctg
      361 aactcatcca tgaagaacac tgcgcaacga acggtacatg gcctaacggt gacccatgtg
      421 aacctatcct acccccgttc actatcacgg ggacccacca ctactatgcc acaaaacctg
      481 gcgaagtggt tagtgggatt ttgtccaaac tcggatcttc ttgggatcca tcccttcggt
      541 ccactgcaga cgtgagcaac agcttcacgt ttagggctga atcggacggt ccaggtagtg
      601 ctgaaattgt gactgaggag caaggtaccg tagtgcaaca acaacctgca cccgcgccaa
      661 cggcattagc aacccttgct actgcctcaa caggcaaatc tgttgagcaa gaatggatga
      721 ccttcttctc ctatcacaca tctatcaact ggtctacagt ggaatctcaa ggaaagatac
      781 tgtactcaca agcactgaat ccttccatca acccatacct tgatcacatt gccaaactct
      841 actcaacgtg gtctggcgga attgatgtca ggttcaccgt ctctgggtct ggagtgttcg
      901 gcggaaaact tgccgcactc ctagtcccgc caggcgttga gcccatcgaa tctgtctcca
      961 tgttgcagta tccacacgtt ctgtttgacg cacgccaaac cgaacctgtg atcttcacaa
     1021 ttccagacat tcgaaaaacg ctcttccatt ctatggacga gaccgacaca accaaattgg
     1081 tgatcaatcc ctatgagaat ggagtcgaga acaaaactac ttgctccata actgttgaaa
     1141 ccagaccctc tgctgacttc acttttgctt tgctaaaacc cccaggatct cttatcaaac
     1201 atggttctat cccatcagat ctaatcccca gaaactctgc acactggatg ggaaaccgct
     1261 ggtggagcac gatctctggc ttctctgtcc aaccccgtgt cttccaatca aacagacact
     1321 tcgattttga ttcgacaaca actggctggt caacacccta ttatgtacca attgagatca
     1381 aaattcaagg gaaggtgggt agcaacaaca agtggtttca tgtgatcgac accgataagg
     1441 cgttggtccc aggcatcccc gatgggtggc ctgacacaac tattcctgac gaaaccaaag
     1501 ccaccaacgg caatttctcc tacggggaga gttaccgcgc aggtagcacc accatcaaac
     1561 ccaatgaaaa ttcaacacac ttcaagggta catacatatg tggtacacta tcaactgtgg
     1621 agataccaga aaatgatgaa caacaaatca aaactgaggc tgagaagaaa tctcagacca
     1681 tgtacgtggt aactgcagat tttaaagaca ccatagtaaa accacaacac aaaatctccc
     1741 cacaaaaact tgttgtctac tttgacggcc cagagaagga cttaaccatg agtgcaaccc
     1801 taagtccttt gggttacact ctggttgatg aacaaccagt cgggtcggtg tccagcagag
     1861 ttgtcaggat tgccacactc ccagaagcct ttacacaagg agggaactat ccaatcttct
     1921 atgtcaacaa gataaaagtt gggtattttg acagggcaac aacgaattgc tacaacagcc
     1981 agattctgat gacatctcaa agacttgcag aaggaaatta caaccttccc cctgattccc
     2041 ttgctgtcta tagaatcact gactcttctt cccaatggtt cgacattgga ataaaccacg
     2101 atggtttctc ctatgttgga ctttccgatc tgcctaatga tctatctttc cccctcacct
     2161 cgaccttcat gggagtgcag ctagcacgtg ttaagctagc atctaaggtc aaagcccaca
     2221 ccatcactgc aaaatgaatt atgcaaattt tggacttgac tttctaaaca gtgttgctaa
     2281 cgctgttgtt gagggcaaga aattagattt ggcatctaag ggtctacagt tgaagtcccg
     2341 cgctctggac acagagaggg cattcaatta cgacagactc gcatttgaaa agcacaaatt
     2401 tgaaacaaat aacgacctaa agatctacgg tgacgcgatg cgcatcagtg cactccgtgc
     2461 tgctggcctt cgcatcaatc cgtactcaaa cggtcgccaa atttatcaag atgaagctga
     2521 ccttgcaaat ctgcactctt actatagctt ctacaaaacg gactagttcc aacctgcata
     2581 caattctcca aaactttagc ctatgcttta tttcctttta tcagttcctt actttagtta
     2641 gttaagtgtt ttccacttca cctctgtcta tctatgtaat caatgggata attggtctta
     2701 atctagtaga ctgtagaatt agttaattgg taggttgcat tagg
//