From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: coxM=cytochrome c oxidase subunit II homolog...coxP=cytochrome c
Date: 27 Jan 93 05:55:33 GMT
Distribution: bionet
Checksum: 05727 13

LOCUS       S117784      5402 bp    DNA             BCT       12-JAN-1993
DEFINITION  coxM=cytochrome c oxidase subunit II homolog...coxP=cytochrome c
            oxidase subunit III homolog  [Bradyrhizobium japonicum, Genomic, 6
            genes, 5402 nt]
ACCESSION   S47705
KEYWORDS    .
SOURCE      Bradyrhizobium japonicum
  ORGANISM  Bradyrhizobium japonicum
            Unclassified.
REFERENCE   1  (bases 1 to 5402)
  AUTHORS   Bott,M., Preisig,O. and Hennecke,H.
  TITLE     Genes for a second terminal oxidase in Bradyrhizobium japonicum.
  JOURNAL   Arch. Microbiol. 158, 335-343 (1992)
  STANDARD  full automatic
COMMENT     This entry [NCBI gibbsq 117784] was created by the journal scanning
            component of NCBI/GenBank at the National Library of Medicine.
            This sequence comes from Fig. 2.
FEATURES             Location/Qualifiers
     CDS             complement(1..378)
                     /partial
                     /note="Description: orf2 5' of coxM;  For the protein
                     sequence (NCBI gibbsq 117785):  Method: conceptual
                     translation supplied by author.  This sequence comes from
                     Fig. 2."
                     /codon_start=1
                     /translation="MATLYSDKIVKRHLFGEAVSYPIRKIGLLDLKEVLRLGWEDFQA
                     MPSHAIVVCVIYPVLGLVLFRMVLGYSVLPLLFPLAAGFALIGPFAAIGLYELSRRRE
                     RGEEVDAWDAVKVLRAPSFGAMLE"
     CDS             933..1766
                     /note="cytochrome c oxidase subunit II homolog;  For the
                     protein sequence (NCBI gibbsq 117786):  Method: conceptual
                     translation supplied by author.  This sequence comes from
                     Fig. 2."
                     /gene="coxM"
                     /product="CoxM"
                     /codon_start=1
                     /translation="MAVALILLLIAIGSVLFHLFSPWWWTPIATNWGYIDDTINITFW
                     ITGFVFTAVILFMAYCVFRFHHKEGRQAAYNPENKKLEWWLSVGTGVGVAAMLAPGLV
                     VWHQFVTVPADATEVEIMGQQWQWSFRLPGKDGRLGTSDVRNISPENPMGLNRDDPHG
                     QDDVVIENGDLHLPIGKPVKVLLRSVDVLHDFYVPEFRAKMDMVPGMVTYFWIRPIRT
                     GTFDVLCAELCGAAHYQMRAKVIVEAESDYHAWLEQQKTFAGLSGRNAVVRAKYNSGD
                     D"
     CDS             1834..3609
                     /note="cytochrome c oxidase subunit I homolog;  For the
                     protein sequence (NCBI gibbsq 117787):  Method: conceptual
                     translation supplied by author.  This sequence comes from
                     Fig. 2."
                     /gene="coxN"
                     /product="CoxN"
                     /codon_start=1
                     /translation="MVDVPYDRIADIPPAEVPDVELYHPRSWWTRYVFSQDAKVIAIQ
                     YSLTASAIGLVALVLSWLMRLQLGFPGTFSFIDANQYLQFITMHGMIMVIYLLTALFL
                     GGFGNYLIPLMVGARDMVFPYVNMLSYWVYLLAVLVLASAFFVPGGPTGAGWTLYPPQ
                     AILSGTPGQDWGIVLMLSSLILFIIGFTMGGLNYVVTVLQARTRGMTLMRLPLTVWGI
                     FTATVMALLAFPALFVGSVMLLLDRLLGTSFFMPTLVEMGQLSKYGGGSPLLFQHLFW
                     FFGHPEVYIVALPAFGIVSDLISTHARKNIFGYRMMVWAIVAIGALSFVVWAHHMYVS
                     GMYPYFGFFFATTTLIIAIPTAIKVYNWVLTLWHGDIHLTVPMLFALGFIITFVNGGL
                     TGLFLGNVVVDVPLSDTMFVVAHFHMVMGVAPIMVVLGAIYHWYPKVTGRMLNDVLGK
                     FHFWVTFLGAYLIFFPMHYLGLLGVPRRYFELGDAAFIPPSAHSLNAFITVVALTVGF
                     AQMVFLFNLVWSLFEGEPSGGNPWRATTLEWQTPETPPGHGNWGKQLPIVYRWAYDYS
                     VPGAAQDFIPQNQPPPTGAVQGVAP"
     CDS             3606..4313
                     /note="GTG start codon.  cytochrome c oxidase subunit III
                     homolog;  For the protein sequence (NCBI gibbsq 117788):
                     Method: conceptual translation supplied by author.  This
                     sequence comes from Fig. 2.
                     Author-given protein sequence differs from the conceptual
                     translation for reasons explained in citation"
                     /gene="coxO"
                     /product="CoxO"
                     /codon_start=1
                     /translation="MSAVILFLAVIAVIVGWWLSQQRLTAKPWLEAGPIDDFPGTDAM
                     TWPAAKVGLGVFLAVAGSLFTLFISAYSMRMNMVDWRTMPVPKVLWFNTGVLVLSSVA
                     LQWALMAARRNDIDGVVVGLLAGGASAIAFLAGQLLAWHQLSDAGYFMASNPANAFFY
                     VITAVHGLHLTGGLVALGRTTAGVWRHDTGTAEMRLSVELCTIYWHFLLLVWLVLLGL
                     LTGWTDDFVDICRQLLS"
     CDS             4329..5051
                     /note="cytochrome c oxidase subunit III homolog;  For the
                     protein sequence (NCBI gibbsq 117789):  Method: conceptual
                     translation supplied by author.  This sequence comes from
                     Fig. 2."
                     /gene="coxP"
                     /product="CoxP"
                     /codon_start=1
                     /translation="MAETALRDTGQVPARLEGWQGISADWASDQRAFKNVSWGKAMMW
                     IFLLSDTFIFSCFLLSYMTARMSTTVPWPNPSEVFALNIGGKHIPLILIAIMTFILIS
                     SSGTMAMAVNFGYRRDRVRTAILMLATAAFGATFVSMQAFEWTKLIMEGVRPWGNPWG
                     AAQFGSSFFMITGFHGTHVTIGVIFLIAIARKVWRGDFDVERRGFFTSRKGYYEIVEI
                     TGLYWHFVDLVWVFIFAFFYLW"
     CDS             5061..5402
                     /partial
                     /note="Description: orf1 3' of coxP;  For the protein
                     sequence (NCBI gibbsq 117790):  Method: conceptual
                     translation supplied by author.  This sequence comes from
                     Fig. 2."
                     /codon_start=1
                     /translation="MTNATVHMEGQIQPHVHAAVAPAAAHAKGQQHPIKLYLVVWAWL
                     FVLSTCSYLVDYFGLHGSLRWSLILLFMVLKAGLIVAVFMHMAWERLALAYAILLPPV
                     LVLVFVAIMVLE"
BASE COUNT      952 a   1635 c   1659 g   1156 t
ORIGIN      
        1 ctcgagcatg gcgccgaagg acggtgcgcg cagcaccttg accgcatccc atgcatcgac
       61 ctcctcgccg cgctcacggc ggcggctgag ttcgtagagg ccgatcgcgg caaagggacc
      121 gatcagggca aacccggcgg ccagcggaaa cagcagcggc aggaccgaat agccgaggac
      181 catcctgaac aggacgagac cgagaaccgg atagatcacg cagacgacga tcgcgtgact
      241 cggcatcgcc tggaaatctt cccagcccag gcgcagcacc tctttcaagt cgagcaagcc
      301 gatcttgcga atgggataag aaaccgcctc accgaacagg tgccgcttga cgatcttgtc
      361 ggaataaaga gtggccatgc acacaccctc ctctgaagtc gcggcggaga acggcgcgct
      421 ttccggccac gcgtgtccgc ccttaagtgc gggagacgcg atcgagccga gtacggcagt
      481 tccaggctca acgaggaagg agcttagccg gacgaaaccc gtcgcgacct gcgctccaag
      541 cttagcgcgt gcgatgtgga atgaccagcg ctcccggctg ggtgaaattg tgcgtcgcat
      601 attttgtgcg atgcatcaca tcgagaatgc gactgacgat ggcgagcttg cacggcaaca
      661 tggatcgccc acgccgccta agctcgttga catgctattg acgccgggtt cgcgggggat
      721 cattttagaa atgtagacgc ccccagctcc ggtgagattg gcggtcgcga acttctcttg
      781 atatcgcgac cggttgaagg ggcgaggcaa gaggcgcggc gatggcgcat atgtcagcat
      841 agaaccagca tagagaaagt cagccatcgc gacagacgcg agctccgccc tggattcgta
      901 tccgcagcct ttgttggcaa ggatggttca ggatggctgt cgcactgata ctgcttctga
      961 tcgcgatcgg ttcggtgctg tttcacctct tcagcccgtg gtggtggacg ccgatcgcca
     1021 ccaactgggg ctatatcgac gacacgatca acatcacgtt ctggatcacc gggttcgtct
     1081 ttaccgcggt catcctgttc atggcctatt gcgtctttcg ctttcaccat aaggagggaa
     1141 gacaggccgc gtacaatccc gaaaacaaga agcttgaatg gtggctcagt gtcgggaccg
     1201 gcgtcggcgt cgctgccatg ctcgcacccg gcctggtcgt ctggcaccag ttcgtgaccg
     1261 ttccggcaga tgccaccgag gtcgagatca tgggccagca atggcagtgg agcttccgct
     1321 tgccggggaa ggatggccgg ttgggcacgt ccgatgtccg caacatcagt cctgagaacc
     1381 cgatgggtct caatcgcgac gatccgcacg gccaggacga cgtcgtgatc gaaaatggcg
     1441 acctgcatct tccgatcggg aagccggtca aggttttgct ccggtccgtt gacgtcctgc
     1501 acgatttcta tgtgcctgag ttccgggcca agatggatat ggtgccgggc atggtcactt
     1561 atttctggat aaggccgatc cgaaccggaa cctttgatgt tctctgcgcg gagctgtgtg
     1621 gcgcggcgca ctaccagatg cgcgccaagg tcatcgtcga ggcagagagc gactatcacg
     1681 cctggctgga gcagcagaag acgtttgccg gattgtcagg tcgaaatgcc gttgtgaggg
     1741 cgaagtacaa ttccggcgac gactaggaga atgcaggtcg ggcgcgtgaa gacgagctga
     1801 tcgccccgaa ggaaacgacc gaggaggtgc tctatggtcg atgtccccta tgacaggatt
     1861 gcagacattc cgcctgccga agtgcccgat gtcgagctct accatcccag gagctggtgg
     1921 acacggtatg tcttttcgca agacgccaag gtgatcgcca tacagtactc gctgacagcc
     1981 tccgccatcg gactggtggc cctggtcctg tcgtggctga tgcgactgca actgggattt
     2041 cccggcacat tctcctttat cgatgccaac cagtacctcc agttcatcac catgcacggc
     2101 atgatcatgg tgatctacct gctcacggcg ttgtttctcg gaggcttcgg caattacctg
     2161 atcccgctga tggttggcgc acgggacatg gtctttccct atgtgaacat gctgagctac
     2221 tgggtctacc tgctcgcagt cctggtgctg gcctcggcct tcttcgtgcc cggcggcccc
     2281 accggcgccg gctggacgct gtatccgcca caggcgattc tgtcgggcac gcccggacag
     2341 gattggggca tcgtcctcat gctgtcctcc ctgattctgt tcatcatcgg cttcaccatg
     2401 ggtgggctga attatgtggt gaccgtgctg caggcgcgca cccgcggcat gacgctgatg
     2461 cgcctgccgc tgacggtgtg gggcatcttc acggccaccg tcatggcgct gctggcattc
     2521 cccgcgttgt tcgttggctc ggtgatgttg ctgctcgatc gtctgctggg gaccagcttc
     2581 ttcatgccga ccctcgtcga gatgggccag ctgagcaaat atggcggcgg cagcccgctc
     2641 ctgttccagc acctgttctg gttcttcggt caccccgaag tctacatcgt cgccctgccc
     2701 gccttcggca tcgtctccga cctcatcagc acgcatgcgc gaaagaacat cttcggttat
     2761 cgcatgatgg tctgggccat cgtggcgatt ggagcgctca gtttcgtcgt gtgggcgcac
     2821 cacatgtatg taagcggcat gtacccgtat ttcgggttct tcttcgccac gacgacgctg
     2881 atcatcgcca tcccgaccgc catcaaggtc tacaactggg tgctgaccct gtggcatggc
     2941 gacatccatc tcacggtgcc gatgctgttc gccctcggct tcatcatcac ttttgtgaat
     3001 ggcgggctta ccggactgtt cctcggcaac gtcgtcgtgg acgtgcccct gtcggatacc
     3061 atgttcgtcg tcgcgcattt ccacatggtg atgggcgtcg cgccaatcat ggtcgtgctc
     3121 ggggcgatct accactggta cccgaaggtc acggggcgaa tgctgaacga cgtgctgggc
     3181 aagttccact tctgggttac gttcctcggc gcctacctga tcttctttcc catgcattat
     3241 ctcgggctgc tcggcgttcc gcgccgatac ttcgaactcg gcgacgcggc gttcatcccg
     3301 ccgtcggccc actcgctgaa cgcctttatc accgtggtgg cgctgacggt gggtttcgcc
     3361 cagatggtgt tcctgttcaa tctcgtctgg agcctgttcg agggcgagcc ttcgggcggc
     3421 aatccgtggc gagcgacgac gctggagtgg caaacgccgg agacgccgcc agggcacggc
     3481 aactggggca agcagctccc gatcgtctat cgctgggcct atgattacag cgtgccgggc
     3541 gcggcgcagg acttcattcc gcagaaccag ccgcccccga cgggggccgt tcagggagtt
     3601 gctccgtgag cgccgttatc ctgttcctgg ccgtgatcgc cgtcatcgtc ggatggtggc
     3661 tctcgcagca acggctgact gcgaaaccgt ggctggaggc aggtccgatc gatgatttcc
     3721 ccggcacgga cgccatgacc tggccggccg cgaaggtcgg acttggcgtg tttctcgctg
     3781 ttgccggttc gttgttcacg ctgttcatca gcgcctactc catgcggatg aacatggtgg
     3841 actggcggac aatgccggtg ccaaaggtgc tgtggttcaa cacgggcgtg ctggtcctga
     3901 gcagcgtcgc gctgcaatgg gccctcatgg ccgcgcgccg caacgacatc gacggcgtcg
     3961 tcgtcggcct gctcgcgggc ggagcgtcgg cgatcgcgtt tctcgccggg cagctgctgg
     4021 catggcatca actgagcgac gccggctatt tcatggcgtc caatccggcc aatgccttct
     4081 tctacgtgat caccgcggtg cacgggctgc atctgaccgg cggcctggtt gcgctcggcc
     4141 gaaccacagc gggggtatgg cggcacgaca ccgggacggc cgagatgcgc ctgagtgtgg
     4201 agctgtgcac catctactgg catttcctgc tgctggtctg gctggtcctg ctcggtctcc
     4261 tcacgggctg gacggacgat ttcgtcgaca tctgtcgcca attgctgagc taggaaggac
     4321 gagacgagat ggccgagacc gcgctgagag acaccggaca agtgcctgcc cggcttgaag
     4381 gctggcaagg tatctccgcc gactgggcgt cggatcagcg cgccttcaag aacgtgtcct
     4441 ggggcaaggc catgatgtgg atcttcctcc tcagcgacac cttcatcttc agttgcttcc
     4501 tgctgtccta catgaccgca cggatgtcga cgaccgtgcc gtggcccaat cccagcgaag
     4561 tctttgccct caatatcggg ggcaagcaca tccccctcat cctgatcgcc atcatgacct
     4621 tcatcctgat cagcagcagc gggacgatgg cgatggccgt caatttcggc taccgcaggg
     4681 atcgcgtcag gaccgcgatc ctgatgctgg ccacggcggc tttcggcgca accttcgtca
     4741 gcatgcaggc cttcgaatgg accaaactga tcatggaggg cgtccgtccc tggggcaatc
     4801 cgtggggcgc ggcacagttc ggttcgagct tcttcatgat caccggcttc cacgggaccc
     4861 atgtgacgat cggcgtgatc ttcttgatcg cgatcgcgcg caaggtctgg cggggagact
     4921 ttgatgtcga aagacgcggc ttcttcacga gccggaaggg ttactacgag atcgtcgaga
     4981 tcaccggcct gtactggcac ttcgtcgacc tcgtatgggt gttcatcttt gcctttttct
     5041 acctttggtg aggtcggcac atgacaaacg ccacggtaca catggaagga cagatccagc
     5101 ctcatgtgca cgccgcagtc gcaccagcgg cggctcacgc caagggccag cagcacccga
     5161 tcaagctcta tctcgtggtc tgggcatggc tgttcgttct cagcacctgc tcctacctcg
     5221 tcgattattt tgggctgcac ggcagtctca gatggtcgct gatcctgctg ttcatggtgt
     5281 tgaaggctgg cctcatcgtc gccgtcttca tgcacatggc ctgggagcgg ctggccttgg
     5341 cctatgccat cctgctgccg ccggttctgg tgctggtatt cgtggcgatc atggtgctcg
     5401 ag
//