From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Human T-cell lymphotropic virus type I envelope glycoprotein gp46
Date: 31 Dec 92 01:34:52 GMT
Distribution: bionet
Checksum: 24237 5

LOCUS       HL1POL03     1467 bp ds-DNA             VRL       17-DEC-1992
DEFINITION  Human T-cell lymphotropic virus type I envelope glycoprotein gp46
            gene, complete cds.
ACCESSION   M92818
KEYWORDS    envelope glycoprotein.
SEGMENT     3 of 4
SOURCE      Human T-cell lymphotropic virus type I (individual_isolate MSHR-1
            (from Australian aborigine)) DNA.
  ORGANISM  Human T-cell lymphotropic virus type I
            Viridae; ss-RNA enveloped viruses; Positive strand RNA virus;
            Retroviridae; Oncovirinae; Type C oncovirus group; Mammalian type C
            oncoviruses.
REFERENCE   1  (bases 1 to 1467)
  AUTHORS   Bastian,I., Gardner,J.F., Webb,D. and Gardner,I.
  TITLE     Isolation of a human T-lymphotropic virus type I from Australian
            aboriginals
  JOURNAL   J. Virol. (1993) In press
  STANDARD  full automatic
FEATURES             Location/Qualifiers
     sig_peptide     1..60
                     /gene="env"
                     /codon_start=1
     mat_peptide     61..936
                     /product="envelope glycoprotein gp46"
                     /gene="env"
                     /codon_start=1
     mat_peptide     937..1464
                     /product="envelope glycoprotein gp21"
                     /gene="env"
                     /codon_start=1
     CDS             1..1467
                     /gene="env"
                     /note="cumulative data from amplified products of multiple
                     PCR reactions sequenced after ligation into pUC18 and
                     transformation of E.coli JM109. Corresponds to base
                     5202-6668 in EMBL database for ATK-1"
                     /product="envelope glycoprotein gp46"
                     /codon_start=1
                     /translation="MGKFLTTLILFLQFCPPILCYYSPSCCTLTIGVSSYHSKPCNPA
                     QPVCSWTLDLLALSADQALQPPCPNLVSYSNYHATYSLYLFPHWIKKPNRNGGGYYSA
                     SYSDPCSLKCPYLGCQSWTCPYTGAVSSPYWKFQQDVNFTQEVSRLNINLHFSKCGFP
                     FSLLVDAPGYDPIWLLNTEPSQLPPTAPPLLPHSNLDHILEPSIPWKSKLLTLVQLTL
                     QSTNYTCIVCIDRASLSTWHVLYSPNISIPSSSSTPLLYPSLALPAPHLTLPFNWTHC
                     FDPQIQAIVSSPCHNSLILPPFSLSPVPTLRSRSRRAVPVAVWLVSALAMGTGIAGGI
                     TGSMSLASGKNLLHEVDKDISQLTQAIVKNHKNLLKIAQYAAQNRRGLDLLFWEQGGL
                     CKALQEQCCFLNITNSHVSILQERPPLENRVLTGWGLNWDLGLSQWAREALQTGITLV
                     ALLLLVILAGPCILRQLRQLPSRTRYPHYSLINPESSL"
BASE COUNT      344 a    495 c    236 g    392 t
ORIGIN      
        1 atgggtaagt ttctcaccac tttgatttta ttcctccagt tctgcccccc tattctctgt
       61 tattacagcc ccagctgctg tactctcact atcggagtct cctcatacca ctctaaaccc
      121 tgcaatcctg cccagccagt ttgctcatgg accctcgact tgttggccct ttcagcagat
      181 caggccctac agcctccctg ccctaatcta gtaagctact ccaactacca tgccacctat
      241 tccctatatc tattccctca ctggattaaa aagccaaacc gaaatggcgg aggctactat
      301 tcagcctctt attcagaccc ttgttccctg aaatgcccat acctcgggtg ccaatcatgg
      361 acctgcccct atacaggtgc cgtctccagc ccctactgga agtttcagca agatgtcaat
      421 tttactcagg aagtctcacg cctgaatatt aatctccatt tttcaaaatg cggtttcccc
      481 ttctcccttc tagtcgatgc acccggatat gaccccatct ggctccttaa taccgaaccc
      541 agccaactgc cccctactgc ccctcctcta cttccccact ccaacttaga ccacatcctt
      601 gagccctcta taccatggaa atcaaaactc ctgactctag tccagctaac cctacaaagc
      661 actaattata cttgtattgt ctgtatagat cgtgctagcc tgtccacctg gcacgtccta
      721 tactctccta acatctctat tccatcctct tcttctactc ccctccttta cccatcgtta
      781 gcgcttccag ctccccacct gacgttaccg tttaactgga ctcactgctt tgacccccag
      841 attcaagcta tagtctcctc cccctgtcat aactccctca tcctgccccc cttttccctg
      901 tcacctgttc cgaccctacg atcccgttcc cgccgagcgg taccggtggc agtctggcta
      961 gtctccgccc tggccatggg aaccggaatt gctggcggga ttaccggctc catgtccctc
     1021 gcctcaggaa agaatcttct acatgaggta gacaaagata tttcccaatt aacccaagca
     1081 atagtcaaaa atcacaaaaa tctactcaaa attgcacaat atgctgccca aaacagacga
     1141 ggccttgatc tcctgttctg ggaacaagga ggattatgca aggcactaca agaacagtgc
     1201 tgttttctaa acattactaa ttcccacgtt tcaatactac aagaaagacc accccttgag
     1261 aatcgagtcc taactggctg gggtcttaac tgggaccttg gcctctcaca atgggcccga
     1321 gaggccctac aaactggcat cacccttgtt gcgctactcc ttcttgttat tcttgcagga
     1381 ccatgcatcc tccgtcagct acgacaactc ccctcgcgca ccagataccc ccattactcc
     1441 cttataaacc ctgagtcatc cctataa
//