From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Rice stripe virus RNA 4, complete sequence.
Date: 12 Sep 92 10:03:31 GMT
Distribution: bionet
Checksum: 33674     5

LOCUS       RCSRNA4      2157 bp ss-RNA             VRL       12-SEP-1992
DEFINITION  Rice stripe virus RNA 4, complete sequence.
ACCESSION   D10979 D01164
KEYWORDS    RNA 4; S protein; stripe disease specific protein.
SOURCE      Rice stripe virus (individual_isolate T) (library: pUC19) cDNA to
            genomic RNA.
  ORGANISM  Rice stripe virus
            Viridae; ss-RNA nonenveloped viruses; Tenuivirus group.
REFERENCE   1  (bases 1 to 2157)
  AUTHORS   Zhu,Y.F., Hayakawa,T. and Toriyama,S.
  TITLE     Complete nucleotide sequence of RNA4 of rice stripe virus isolate
            T, and comparison with another isolate and with maize stripe virus
  JOURNAL   J. Gen. Virol. 73, 1309-1312 (1992)
  STANDARD  full staff_review
COMMENT     Data kindly submitted in computer readable form by:
            Yafeng Zhu
            c/o MKC Research Center
            Plantech Research Institute
            1000 Kamoshida-cho, Midori-ku
            Yokohama 227
            Japan
            Phone:  045-963-3523
            Fax:    045-962-7492
FEATURES             Location/Qualifiers
     CDS             55..591
                     /note="putative S protein (stripe disease-specific
                     protein)"
                     /product="20K protein"
                     /codon_start=1
                     /translation="MQDVQRTIEVSVGPIVGLDYTLLYDTLPETVSDNITLPDLKDPE
                     RVTEDTKKLILKGCVYIAYHHPLETDTLFIKVHKHIPEFCHSFLSHLLGGEDDDNALI
                     DIGLFFNMLQPSLGGWITKNFLRHPNRMSKDQIKMLLDQIIKMAKAESSDTEEYEKVW
                     KKMPTYFESIIQPLLHKT"
     stem_loop       918..953
     stem_loop       1010..1055
     CDS             complement(1246..2106)
                     /product="32K protein"
                     /evidence=EXPERIMENTAL
                     /codon_start=1
                     /translation="MALSRLLSTLKSKVLYDDLSEESQKRVDNKNRKSLALSKRPLNQ
                     GRVTIDQAATMLGLEPFSFSDVKVNKYDMFIAKQDYSVKAHRKATFNILVDPYWFHQP
                     LTHYPFFRVETFAMVWIGIKGRASGITTLRIIDKSYVNPSDQVEVEVRYPISKNFAVL
                     GSLANFLALEDKHNLQVSVSVDDSSVQNCVISRTLWFWGIERTDLPVSMKTNDTVMFE
                     FEPLEDKAINHLSSFSNFTTNVVQKAVGGAFTSKSFPELDTEKEFGVVKQPKKIPITK
                     KSKSEVSVIM"
BASE COUNT      694 a    440 c    398 g    625 t
ORIGIN      RNA 4.
        1 acacaaagtc cagggcattt gtacaacgat ccagcaattt aatcagaatc gaagatgcaa
       61 gacgtacaaa ggacaataga agtttctgtt ggtcctattg taggcctaga ttacactcta
      121 ttgtatgaca ctctgcctga gactgttagc gataacatta ctctacctga tttgaaagat
      181 ccagagagag tcacggaaga tactaaaaag ctaatactca aaggctgtgt ttacatagca
      241 tatcatcacc ccttggagac tgacaccctt ttcatcaaag ttcacaaaca tataccagag
      301 ttttgtcact cattcctatc acaccttcta ggaggtgaag atgatgacaa tgctcttata
      361 gacattggtc tgtttttcaa catgttgcaa ccttctttgg gcggttggat aaccaagaat
      421 tttcttagac accctaatag gatgtctaag gaccaaatta aaatgctcct ggatcagatc
      481 atcaagatgg ctaaggctga gagctcagac acagaagagt atgaaaaagt gtggaagaag
      541 atgccaactt attttgaatc aattatccaa cctcttcttc ataaaacata gtttatttca
      601 tatcacattt tccacccacg agtgctagca ttatagaagt ggagctagtt tgggttgacc
      661 ttcttgtatg aaaatacgag tatactatag tctaaacaat atacatgatg tttttccact
      721 taagcttgac agtttgtaaa taattgtgtg tgattgtgcg tgtgtgtatg tatgttaatg
      781 tataactgtg cataggtgtg tagatataaa cactagaagc aattaaattg atatattcct
      841 atcaactcat atacatactt gtgagtctta gctcctctat atacacacat agaaacatga
      901 gagcattata caagacccat tgcaaaaata ctaataactt agtttttaca atgtcaaaac
      961 taaaaactga aataccaaaa acatgagaaa atagaaaatc aaaaacaatg aatggtgcta
     1021 agcaccacat ccggatgtgg tgcgtagcac cattttcata acattaatct ataacctact
     1081 tgtagcaaaa acacccatat gcatgaagtg catagcactc tcttatgggt tgactactat
     1141 gattacgtga atgcatagca ttctcctgga aaaaagcaga gcagaacaaa ccacatcaag
     1201 tgcatagcac aagatgttag catactccgg aactggttat ctcacctaca tgatgacaga
     1261 aacttcagat tttgatttct ttgtgatggg tatcttcttt ggctgcttca ccacaccgaa
     1321 ctccttctca gtgtctagct cagggaagct cttgctggtg aaagcacctc caacagcttt
     1381 ctgaacaaca ttagtcgtaa aattactaaa gctggacaaa tggtttatag ccttatcttc
     1441 tagtggttca aattcaaaca tcacagtgtc attggtcttc atggacactg gcagatcagt
     1501 cctctcaatc ccccagaacc aaagagttct agagatgaca cagttctgca ctgagctgtc
     1561 atcaacagat acggacactt gaagattatg cttatcctcc aaagccagaa aattcgccag
     1621 agaacccaag acagcaaaat tcttgctaat tgggtagcga acctctacct caacttgatc
     1681 tgaggggttc acataggact tgtctattat gcggagggta gttattccac tagctctacc
     1741 cttaattcca atccagacca tagcaaaagt ttccactcta aagaatgggt aatgggtgag
     1801 aggttgatga aaccaatatg gatcaacaag tatgttgaaa gttgctttcc tatgggcctt
     1861 cacagaatag tcctgtttgg ctatgaacat atcatacttg ttcaccttga catctgagaa
     1921 gctgaagggt tccaatccaa gcattgtggc agcttggtca attgtaaccc taccctggtt
     1981 cagaggcctt ttggagagag ctagagattt cctattctta ttatcaactc tcttttggga
     2041 ctcctcacta aggtcatcat agagtacctt actttttaaa gtggacaaaa gtcgagacaa
     2101 agccataatt aaagtatata ttagcttaat ctcaaaagat atgccctgac tttgtgt
//