From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: B.pertussis fimbrial gene cluster fimA, fimB and fimC genes
Date: 10 Sep 92 10:14:13 GMT
Distribution: bionet
Checksum: 05385     9

LOCUS       BPEFIMABC    4106 bp ds-DNA             BCT       10-SEP-1992
DEFINITION  B.pertussis fimbrial gene cluster fimA, fimB and fimC genes
ACCESSION   X64876
KEYWORDS    chaperone-like protein; fimA gene; fimB gene; fimC gene;
            fimbrial subunit gene; outer membrane protein.
SOURCE      Bordetella pertussis DNA.
  ORGANISM  Bordetella pertussis
            Prokaryotae; Gracilicutes; Scotobacteria; Aerobic rods and cocci;
            Alcaligenaceae.
REFERENCE   1  (bases 1 to 4106)
  AUTHORS   Willems,R.J., van der Heide,H.G. and Mooi,F.R.
  TITLE     Characterization of a Bordetella pertussis fimbrial gene cluster
            which is located directly downstream of the filamentous
            hemagglutinin gene
  JOURNAL   Unpublished (1992)
  STANDARD  full automatic
COMMENT     *source: strain=Wellcome 28; *source: clone=pRIP 503;
            From EMBL    entry BPFIMABC;  dated 05-JUN-1992.
FEATURES             Location/Qualifiers
     CDS             <1..438
                     /product="FimA major subunit pseudogene"
                     /gene="fimA"
                     /codon_start=1
                     /translation="VQLPTISRTALKDVGSTAGGTVFDVKLTECPQALNGQQVGLFFE
                     SGGTVDYTSGNLFAYRADSQGVEQVPQTKADNVQANLDGSAIHLGRNKGAQAAQTFLV
                     SQTAGSSTYGATLRYLACYIRSGAGSIVAGNLRSQVGFSVMYP"
     -10_signal      600..605
     sig_peptide     688..759
                     /gene="fimB"
                     /codon_start=1
     CDS             688..1422
                     /product="FimB chaperone-like protein"
                     /gene="fimB"
                     /codon_start=1
                     /translation="MARWRRRLGVAALGAAMLASLAPAARDSLVITGTRVIYNAGSPE
                     TTVKMSNEGQAPALMQAWIDDGNAEAKPDEVQVPFFLTPPLARVDPGKGQTLRIFFNG
                     YPDGKTLPSDRESVFWLNVLEVPPKATPEEGHGVLQLTIRSRLKLFYRPKGLSGNPLT
                     AAADLTFKRKPNGVLEVHNPTPYYVNLQKLEVGENGAHGSKTPWMLAPLSSDELRLKG
                     TGAKSVQYWAIDDFGGVTPYQAAIAD"
     mat_peptide     760..1419
                     /product="FimB chaperone-like protein"
                     /gene="fimB"
                     /codon_start=1
     sig_peptide     1485..1529
                     /codon_start=1
     CDS             1485..4106
                     /product="FimC outer membrane protein"
                     /gene="fimC"
                     /codon_start=1
                     /translation="MKQIPLILAMSLAFAAAAKGESAPDMQAAVNFDSAMLWGGANGA
                     DLSRFNYSNALRPGNYIVDIYANNYPLIRQQVRFVAAQTSGQGLKTAPAVACFTYGQL
                     EAMQVRLRALDPALVADLKSSGRCEVLGKLFPDSRESFDFGENRLEVSIPQAYTINRF
                     RRDISPDEWDSGITAFRLGYQYNYADYIGGLRAGRRLDLNLYSGFNFKGWYLRNSSTL
                     GWGQGRFTRRSQRTSLQTDIPSWRARLVFGDVFSSGEYFAPYSMRGMLVGSDTAMLPY
                     SERLYRPTIRGVARTRANVKVYQAGVLVFQDAVPPGPFAIDDYSPASYGGDLRVVVTE
                     ANGAVQTFTVPYASAVRLILPGQTQWSFSAGRYRNYRNDGQDRPWVTQLTGRHGVADG
                     VNLYGGLLIAQAYQAGLAGLSWNTPWGAMAADATLSRSQLSTTGNANGSSLRFSYSKT
                     LSGTNTAIRLATLRYSSSGFWNFADAVNAGPVETNGRNGRFGLYSLLGRERPRGDFSV
                     TLSQPLGGYGSLYVSALRRTYWGSSRVDQQTQLGYSTQVGRVGVNLDVSRTENRRSTE
                     HQVMLNLSIPLYGATSSGVVTGSLARTGSAPVQQSVNYSGMSGERDQYTYGLGVQRAG
                     TSAQYALNGSWSGTYGEVSGQLTHGRSYSQYQINGSGGLVAHAGGVTFGQYQAGTIGL
                     IQAEAAAGAKVVNTRNAAVDRSGYGLVSLTPYSLNEVELSPQDLPLDVQLESTVEQVI
                     PRAGAVVALRFPTRHDVAAMLVAEPGSEGALVFGTEVRDGAGKVVGVAGQGASALVRG
                     VSASGTLEVTRADGSICRATYDLKSAGQAVHGLPRIALACAPQGGGERGARAAGQAVA
                     QPSAISISGKDHEPDIR"
     mat_peptide     1530..4103
                     /product="FimC outer membrane protein"
                     /gene="fimC"
                     /codon_start=1
BASE COUNT      701 a   1284 c   1423 g    698 t
ORIGIN
        1 gtgcaattgc cgaccatttc gcgcaccgcg ctcaaggacg tagggtcgac ggcaggcggg
       61 acagtttttg acgtgaaact gaccgagtgt ccgcaggcat tgaatggtca gcaagtggga
      121 ttgttcttcg aatctggtgg cacggttgac tatacgtcgg gaaacctgtt tgcgtatcgg
      181 gccgatagtc agggcgtcga acaggtaccg cagacgaaag ccgacaacgt gcaagccaat
      241 ctggatggtt ccgctattca tttgggccgc aacaagggtg cgcaggctgc tcagacgttt
      301 ctggtatcgc agacggctgg gtcgtcgacg tacggggcga ccctgcgcta tctggcatgc
      361 tacatccgtt cgggcgctgg ttccattgtt gcggggaatc tccgcagtca ggtggggttc
      421 tccgtgatgt atccgtagcc cgtgaaagag gggtcaccca ctgcgggggg ccccggtacg
      481 ggatggtcgg cttgtcacga gattcttgtt ttccatttct ttcttttcac tcggtcgcag
      541 cgccggcttg atgcatgcaa agcatcgata gctacgaacg gccgcgattc ttgaatcatg
      601 aatacatacg cttgtgacgg ggcgctcgcg cagagccggc cccagggatg gtttacgcct
      661 gcatttacgg taaagcggca aggcggcatg gcgcgctggc gccggcggct gggcgtcgcg
      721 gcgctgggcg ccgccatgct ggcgagcctg gcgccggccg cccgggacag cctcgtcatc
      781 acgggtacgc gcgtgatcta caacgcgggc tcgcccgaga ccacggtgaa gatgagcaac
      841 gaggggcagg cccccgcgct gatgcaggca tggatcgatg acggcaatgc cgaggcgaag
      901 ccggacgaag tccaggtgcc gttcttcctg acgcctccgc tggcgcgggt ggacccgggc
      961 aaggggcaga ccttgcgcat tttcttcaat ggctacccgg atggcaagac gctgccgtcc
     1021 gaccgcgaat cggtcttctg gctgaacgtt ctcgaagtgc cgcccaaggc gacgcccgag
     1081 gaaggccacg gggtcctgca gctgaccatc cgctcgcgcc tgaagctgtt ctatcggccc
     1141 aagggcctgt ccggcaaccc gctgacggcc gccgccgacc tgaccttcaa gcgcaagccc
     1201 aacggcgtgc tggaggtgca caacccgacg ccgtactacg tgaacctgca aaagctggag
     1261 gtgggcgaga acggcgcgca cggcagcaag acgccgtgga tgctggcgcc gctttcctcg
     1321 gacgagctgc gcctgaaagg gacgggggcc aagtcggtgc agtactgggc catcgacgac
     1381 ttcggcggcg tgacgccata tcaggcggcc atagcggact gacaagacgg gggcaccggg
     1441 actggcgcgc gtcatgggga cgttgccgaa accgacgctg aatcatgaaa cagataccac
     1501 tgattctcgc gatgagcctt gccttcgccg ccgcggcgaa gggcgaatcc gcgccggata
     1561 tgcaggcggc ggtcaacttc gactcggcca tgctgtgggg cggcgccaat ggcgcggatc
     1621 tgagccgatt caactacagc aacgcgctgc ggccgggcaa ctacatcgtc gacatttacg
     1681 ccaacaacta tccgctgatc cggcagcagg ttcgattcgt cgcggcgcag acgtccgggc
     1741 agggcttgaa gacggcgccg gcggtggcgt gtttcaccta tggccagctg gaagcgatgc
     1801 aggtccggct gcgcgcgctc gatccggcct tggtcgccga cctcaaatcc agcgggcgct
     1861 gcgaggtgct gggcaagctg ttcccggata gccgcgagtc gttcgatttc ggcgagaacc
     1921 gcctggaagt cagcattccg caagcctata cgatcaaccg cttccggcgc gacatctcgc
     1981 ccgatgagtg ggatagcggc attactgcgt tccgcctggg ataccagtac aactatgccg
     2041 attacatcgg cggcttgcgc gcggggcggc ggctggacct gaacctctac agcgggttca
     2101 atttcaaggg ctggtacctg cgcaacagct cgacgctggg atggggccag ggccgcttca
     2161 cgcgccgcag ccagcgcacc agcctgcaga cggatatccc gtcctggcgg gcgcgcctgg
     2221 tgttcggcga cgtgttctcc agcggcgagt acttcgcgcc gtactcgatg cgcggcatgc
     2281 tggtcggcag cgataccgcc atgctgccgt actcggagcg cctgtaccgg ccgaccatac
     2341 gcggcgttgc gcgcactcgg gccaacgtca aggtgtatca ggccggcgtg ctggttttcc
     2401 aggacgccgt gcctcccggg ccgttcgcga tcgacgatta cagtccggcc tcgtatggcg
     2461 gcgacctgcg ggtggtggtg accgaggcga atggcgcggt ccagacgttc accgtgccgt
     2521 acgccagcgc ggtgcgcctg atcctgccgg gccagacgca gtggtcgttc agcgccgggc
     2581 gctatcgcaa ctatcgcaac gatgggcagg accgtccctg ggtgacccag ctgacgggcc
     2641 gccatggcgt ggccgacggc gtcaacctgt acggcggcct gctgatcgcc caggcgtacc
     2701 aggccggcct ggccggcctg agctggaaca cgccctgggg ggcaatggcg gcggacgcca
     2761 cgctgtcgcg cagccagctg tccaccaccg gcaatgccaa cgggtcgagc ctgcggttct
     2821 cctacagcaa gaccttgtcc ggcaccaaca cggcgatccg gctggctacg ctgcgctact
     2881 cgtcgagcgg gttctggaat ttcgccgatg cggtcaatgc cggcccggtc gagacgaacg
     2941 ggcgcaacgg gcggttcgga ctctattcgc tgctgggccg cgagcggccg cgcggcgatt
     3001 tcagcgtcac gctgagccaa ccgctgggtg gatacggcag cctgtacgtg tcggcgctgc
     3061 ggcggaccta ctggggttcg tcgcgggtcg accagcagac ccagctgggc tattcgaccc
     3121 aggtcggccg cgtaggcgtg aacctggatg tctcgcgtac ggagaatcgt cgcagcaccg
     3181 agcatcaggt catgctgaat ctgtccattc cgctttatgg cgcgacctcc agcggcgtgg
     3241 tgacgggatc gctggcgcgt accggctcgg cgcccgtaca gcaaagcgtc aactacagcg
     3301 gcatgtcggg cgagcgcgat cagtacacct atggcctggg cgtgcagcgc gccggcacga
     3361 gcgcgcagta cgcgttgaac ggctcctggt caggcacgta cggggaggta agcggacagc
     3421 tcacccatgg gcgcagctac agccagtacc agatcaacgg cagcggcggc ttggtggcgc
     3481 acgcgggcgg cgtgaccttc ggccagtacc aggcgggcac catcggcctg atccaggccg
     3541 aggcggcggc aggcgcaaag gtcgtcaata cgcgcaacgc cgccgtggac cgcagcggct
     3601 atgggctggt gtcgctgacg ccgtattccc tcaacgaggt cgaactgtct ccgcaggacc
     3661 tgcccctgga cgttcagctg gagtccacgg tggagcaagt catcccgcgg gcgggcgccg
     3721 tcgtggcgct gcgctttccg acgcgccatg acgtcgccgc catgctggtt gccgaacccg
     3781 gcagcgaagg cgcgctggta ttcggcaccg aagtgcgcga cggcgccggc aaggtggtgg
     3841 gcgtggccgg ccagggcgca agcgcgctgg tcagaggcgt gtcggcatcg ggcacgctgg
     3901 aggtgacgcg cgcagacggt tcgatatgcc gcgccacgta cgacttgaaa tcggccgggc
     3961 aagccgtgca tggcctgccg cgcattgcgc tggcgtgcgc gccgcaaggc ggcggcgaac
     4021 gtggtgcgcg ggcggcgggc caggccgtgg cgcagccatc agctatctcc atttcgggta
     4081 aagatcatga gccagatatt cgctga
//