From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Rice hoja blanca virus non-structural protein 3 (NS-3) and
Date: 31 Dec 92 01:44:48 GMT
Distribution: bionet
Checksum: 31294 6

LOCUS       HBVMNS3NP    2299 bp ss-RNA             VRL       18-DEC-1992
DEFINITION  Rice hoja blanca virus non-structural protein 3 (NS-3) and
            nucleoprotein (N-protein) genes, complete cds.
ACCESSION   L07940
KEYWORDS    N protein; NS3-glycoprotein; nonstructural protein NS3;
            nucleoprotein; ribonucleoprotein.
SOURCE      Rice hoja blanca virus (strain Costa rica) cDNA to genomic RNA.
  ORGANISM  Rice hoja blanca virus
            Viridae; ss-RNA nonenveloped viruses; Tenuivirus group.
REFERENCE   1  (bases 1 to 2299)
  AUTHORS   de Miranda,J., Hernandez,M., Hull,R. and Espinoza,A.M.
  TITLE     Nucleotide sequence of rice hoja blanca virus RNA-3
  JOURNAL   Unpublished (1992)
  STANDARD  full automatic
FEATURES             Location/Qualifiers
     misc_structure  1..20
     stem_loop       708..1224
     repeat_unit     940..956
     repeat_unit     1150..1166
     misc_structure  2279..2299
     CDS             96..707
                     /function="unknown"
                     /standard_name="NS-3"
                     /note="putative"
                     /product="non-structural protein 3"
                     /codon_start=1
                     /translation="MNVSLYYSGTPVSSHSLLSKNGLSNIVLTCKDLPIPIDLLSLFF
                     DILNERHPSFDEHMFLQMIRKPDDPENLSVFLKSAIWMLSHKRDLPGHYRLPLTCLVS
                     TYSEYFVELKPRQPSTKCWFCKIAKDGLPFRVEGVHGFPSEAELYIVPSKEHAIESFE
                     VLSGKKLYRSPSKKKHGYLIASNKPPLTSKYVEYDPSKPDTKP"
     CDS             complement(1225..2184)
                     /function="ribonucleoprotein"
                     /standard_name="N-protein"
                     /evidence="EXPERIMENTAL"
                     /product="nucleoprotein"
                     /codon_start=1
                     /translation="MTMSVADVQTEIERVTTLALKYITDHKDTLVTFVGQIEYNGYDA
                     GKLLQILKRKAEGRDFGKDLCYLLVMRYTRGTGFVRDVRKKIKTAAGGDTAHEIVTHY
                     GVVQSVGDNADAITLGRLASLFPAVSMNIVRNVSTGAKLAVDSSDLGSSGLDLLLWDF
                     VPQFITLDSLTAPYCTGKGMNTILFSLHVLHGALTTKKTMPDQKKKARSLVTDFELVK
                     YTTELLVITCNAKNLKVEKKTIYRESLMRPFQEGAGDALGFKETFWTSLAKVSTGCVR
                     KMKKDAQAYLSERTPLLKVFVENCNKSEDEVAEAIKSYFVTGA"
BASE COUNT      668 a    510 c    410 g    711 t
ORIGIN      
        1 acacaaagtc ctgggtataa aaaaacaaac aaagatataa gaagagaaaa actttagtga
       61 cttgatatct aattacagga atcatatagt acaagatgaa cgtgtccttg tactacagcg
      121 ggactcctgt ctctagtcat agcttgctca gcaagaatgg tctgtcaaac attgttttga
      181 cttgtaagga tctacccata cccattgatc tcttgtctct tttctttgat atcctcaatg
      241 aacgacaccc aagcttcgat gaacacatgt ttttacaaat gattaggaag ccagatgatc
      301 ctgagaattt gtctgttttc ttgaagagtg cgatatggat gctctctcac aagagagatt
      361 tgccagggca ttacagactg cctctgactt gtttggtttc aacatatagt gagtattttg
      421 ttgaactaaa gcctcggcag ccatcaacaa aatgctggtt ttgtaagata gccaaggatg
      481 gattgccttt tagagtcgaa ggtgtccatg gcttcccgtc agaagcagag ctatacattg
      541 tcccttcaaa agagcatgca atcgagagct ttgaagtgct cagcgggaag aagttataca
      601 gatctcctag caagaagaaa catggatatt tgatagcttc aaataagcca ccactgactt
      661 ccaaatatgt cgagtatgac cccagcaaac ccgatactaa accatgaatg cactcattac
      721 tgcttccatc ttaggcttgg tctactctcc atggttgtga accaaacaga gccttcaact
      781 ctctgagatt ctctcatctc gaacaaaaac aaataggcta agcctatttt ctcttaaaaa
      841 tagtatctgt gctaagcaca gcatccggat attgtttcgg atggttttta cctaacctaa
      901 tttttttgga tttttgttta ttttttgatt tttttgatta tttacatatt tacaagattt
      961 ttcatggttt tttcattttt ttagttttgt tttccttgat atacactcaa atagcaagta
     1021 catggttaat ttactttcaa ggcatagcac actcaacaca cataataatg atatatagga
     1081 caagatacta atttaaacaa caatatagaa tatagaactt aaaagctaat gagattcata
     1141 catatgataa tttacatatt tacaaccaat ctgatttctc atcctttcca gcttcatcta
     1201 ccatctcaat ctgaactctc cattttatgc cccagtgaca aagtagcttt tgatcgcctc
     1261 agcaacctca tcctcactct tgttgcagtt ctccacaaat actttcagta gaggagttct
     1321 ctctgacaaa tatgcttgtg catctttttt catctttctg acacaccccg tggagacctt
     1381 tgctagagag gtccagaaag tctctttgaa tccaagagca tctccagcgc cttcttggaa
     1441 aggcctcatc aaagactctc tataaattgt cttcttctct accttgagat tcttggcatt
     1501 acaagtgatg accaataatt cagttgtata tttcaccaac tcaaaatcag tcacaaggct
     1561 tctagccttc ttcttctgat caggcatggt cttcttagtg gttagagcac catgcaagac
     1621 atgcaaggag aagagaattg tgttcatgcc ttttcctgtg cagtaagggg cagtcagaga
     1681 gtccagagtg ataaactgag gaacaaagtc ccagaggagg aggtctaagc ctgatgaccc
     1741 taaatctgaa gagtcaaccg ctagcttggc tccagttgat acattcctca ctatgttcat
     1801 tgacacagca gggaacagtg acgcaagtct gcctagagtt atagcatcag cattatctcc
     1861 aacagattgc acaactccat aatgtgtcac tatctcatgt gcagtgtcac ctccagctgc
     1921 tgtcttgatc ttctttctaa catctctgac aaacccagta cccctggtgt atctcatcac
     1981 caagagataa cagagatcct ttccaaaatc tctcccttca gcctttctct tcaagatctg
     2041 gaggagcttg cctgcatcat agccattgta ctctatctga ccaacaaaag tcactagcgt
     2101 gtccttgtga tcagttatgt acttgagggc tagtgtagtg accctctcaa tctcagtctg
     2161 aacatcagca actgacatcg tcattgttgc aaccacagtt atgtcttcac gaatgggggc
     2221 aattgtaaga tttatcagaa gtacgtttca gaaaacactc ttgcttgatg atctttacaa
     2281 tgctacccag actttgtgt
//