HDTenEightyP/NetNews huggingface dataset:
From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Giardia lamblia 18S ribosomal RNA (18S rRNA) partial gene.
Date: 10 Apr 92 10:05:05 GMT
Distribution: bionet
Checksum: 49490     2

LOCUS       GIA18RRNAF    183 bp ds-DNA             INV       10-APR-1992
DEFINITION  Giardia lamblia 18S ribosomal RNA (18S rRNA) partial gene.
ACCESSION   M91475
KEYWORDS    18S ribosomal RNA.
SOURCE      Giardia lamblia (strain GS/M-H7) DNA.
  ORGANISM  Giardia lamblia
            Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora;
            Zoomastigophora; Diplomonadida; Diplomonadina; Hexamitidae.
REFERENCE   1  (sites)
  AUTHORS   Sogin,M.L., Gunderson,J.H., Elwood,H.J., Alonso,R.A. and
            Peattie,D.A.
  TITLE     Phylogenetic meaning of the kingdom concept: An unusual ribosomal
            RNA from Giardia lamblia
  JOURNAL   Science 243, 75-77 (1989)
  STANDARD  full staff_review
REFERENCE   2  (bases 1 to 183)
  AUTHORS   Weiss,J.B., van Keulen,H. and Nash,T.E.
  TITLE     Classification of subgroups of Giardia lamblia based upon ribosomal
            RNA gene sequence using the polymerase chain reaction
  JOURNAL   Unpublished (1992)
  STANDARD  full staff_review
FEATURES             Location/Qualifiers
     rRNA            <1..>183
                     /note="corresponding to positions 1251-1433"
                     /product="18S ribosomal RNA"
                     /gene="18S rRNA"
                     /citation=[2]
                     /citation=[1]
     variation       27
                     /note="defines the 'Group 2' type sequence"
                     /note="'c' in variation"
                     /gene="18S rRNA"
                     /citation=[2]
BASE COUNT       30 a     69 c     63 g     21 t
ORIGIN
        1 gcgcaccagg aatgtcttgt aggcgcgcgc ccccaccgcg cgccggacgc gtccctgccc
       61 cttgtacaca ccgcccgtcg ctcctaccga ctgggcgcgg cggcgagcgc cccggacgcg
      121 cgaagggccg cgagcccccg cgcctggagg aaggagaagt cgtaacaagg tatccgtagg
      181 tga
//
From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Human leukocyte common antigen T200 (CD45, LCA0) gene, exon 4, 5'
Date: 8 Apr 92 10:00:48 GMT
Article-I.D.: genbank.Apr.8.03.00.48.1992.16116
Distribution: bionet
Checksum: 03368     2

LOCUS       HUMLCA03       48 bp ds-DNA             PRI       08-APR-1992
DEFINITION  Human leukocyte common antigen T200 (CD45, LCA0) gene, exon 4, 5'
            end.
ACCESSION   M23463
KEYWORDS    T200 glycoprotein; alternative splicing; cell surface antigen;
            cell surface glycoprotein; phosphoprotein.
SEGMENT     3 of 35
SOURCE      Homo sapiens placenta DNA.
  ORGANISM  Homo sapiens
            Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
            Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
REFERENCE   1  (bases 1 to 48)
  AUTHORS   Hall,L.R., Streuli,M., Schlossman,S.F. and Saito,H.
  TITLE     Complete exon-intron organization of the human leukocyte common
            antigen (CD45) gene
  JOURNAL   J. Immunol. 141, 2781-2787 (1988)
  STANDARD  full staff_entry
COMMENT
FEATURES             Location/Qualifiers
     intron          order(M23462:68..107,1..40)
                     /number=3
                     /gene="PTPRC"
     CDS             41..48
                     /note="exon 4, 5' end"
                     /product="T200 glycoprotein"
                     /gene="PTPRC"
                     /codon_start=3
                     /translation="LT"
                     /partial
BASE COUNT       11 a     10 c      4 g     23 t
ORIGIN
        1 tatttatttt gtccttctcc cattttccat taattaacag gattgact
//
From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Human immunodeficiency virus type 1, viral sample FLPH6D, V3
Date: 7 Apr 92 10:03:47 GMT
Distribution: bionet
Checksum: 30562     3

LOCUS       HIVFLPH6D     363 bp ss-RNA             VRL       07-APR-1992
DEFINITION  Human immunodeficiency virus type 1, viral sample FLPH6D, V3
            region.
ACCESSION   M90910
KEYWORDS    .
SOURCE      Human immunodeficiency virus type 1 (HIV-1), directly sequenced
            proviral DNA, clone A06 of DNA ID 8564.
  ORGANISM  Human immunodeficiency virus type 1
            Viridae; ss-RNA enveloped viruses; Positive strand RNA virus;
            Retroviridae; Lentivirinae.
REFERENCE   1  (bases 1 to 363)
  AUTHORS   Ou,C.Y., Ciesielski,C.A., Myers,G., Bandea,C.I., Luo,C.C.,
            Korber,B.T., Mullins,J.I., Schochetman,G., Berkelman,R.L.,
            Economou,A.N., Witte,J.J., Furman,L.J., Satten,G.A., Curran,J.W.
            and Jaffe,H.W.
  TITLE     Molecular Epidemiology of HIV Transmission in a Dental Practice
  JOURNAL   Science (1992) In press
  STANDARD  full automatic
COMMENT     Kindly submitted in computer readable form by the CDC (Centers for
            Disease Control), Atlanta, GA.
            The sequence in this entry is one of 6 directly sequenced clones
            over the V3 region obtained by the CDC from patient "H" of a
            Florida dentist.
FEATURES             Location/Qualifiers
     CDS             <1..>363
                     /note="env polyprotein (AA at 1)"
                     /codon_start=1
                     /translation="LAEGEVIIRSENFTDNAKTIIVQLNATINITCERPHNNTRKSIH
                     IGPGRAFFATGDITGDIRQAHCNLSRKDWNDTLKQIVTKLREQFGSNKTIVFNRSSGG
                     DPEIIMHSFNCGGEFFYCN"
BASE COUNT      150 a     53 c     72 g     88 t
ORIGIN
        1 ctagcagaag gagaggtaat aattagatct gaaaatttca cggataatgc taagaccata
       61 atagtacagc tgaatgcaac tataaacatt acttgtgaaa gaccccacaa caatacaaga
      121 aaaagtatac atataggacc agggagagca ttttttgcaa caggagacat aacaggagat
      181 ataagacaag cacattgtaa ccttagtaga aaagattgga atgacacttt aaaacagata
      241 gttacaaaat taagagaaca atttgggagc aataaaacaa tagtctttaa tcgatcctca
      301 ggaggggacc cagaaattat aatgcacagt tttaattgtg gaggggaatt tttctactgt
      361 aat
//
From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Rat alpha-2-u globulin mRNA.
Date: 9 Apr 92 10:04:59 GMT
Distribution: bionet
Checksum: 55893     2

LOCUS       RATALP2UGL    813 bp ss-mRNA            ROD       09-APR-1992
DEFINITION  Rat alpha-2-u globulin mRNA.
ACCESSION   M27434
KEYWORDS    globulin; hepatic protein.
SOURCE      Rattus norvegicus male liver cDNA to mRNA.
  ORGANISM  Rattus norvegicus
            Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
            Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
REFERENCE   1  (bases 1 to 813)
  AUTHORS   Roy,A.K., Chatterjee,B., Rao,K.V., Murty,C.V., Sarkar,F.H. and
            Majumdar,D.
  TITLE     androgenic regulation of hepatic gene expression
  JOURNAL   J. Steroid Biochem. 27, 1129-1134 (1987)
  STANDARD  full staff_entry
BASE COUNT      233 a    182 c    181 g    217 t
ORIGIN
        1 ctgctgctgc tgtgtctgcg cctgacactg gtctgtggcc atgcagaaga agctagttcc
       61 acaagaggga acctcgatgt ggctaagctc aatggggatt ggttttctat tgtcgtggcc
      121 tctaacaaaa gagaaaagat agaagagaat ggcagcatga gagtttttat gcagcacatc
      181 gatgtcttgg agaattcctt aggcttcaag ttccgtatta aggaaaatgg agagtgcagg
      241 gaactatact tggtttccta caaaacgcca gaggatggtg aatattttgt tgagtatgac
      301 ggagggaata catttactat acttaagaca gactactaca tatacgtcat gtttcatctc
      361 attaatttca agaacgggga aaccttccag ctgatggtgc tctacggcag aacaaaggat
      421 ctgagttcag acatcaagga aaagtttgca aaactatgtg aggcgcatgg aatcactagg
      481 gacaatatca ttgatctaac caagactgat cgctgtctcc aggcccgagg atgaagaaag
      541 gcctgagcct ccagtgctga gtggagactt ctcaccagga ctctagcatc accatttcct
      601 gtccatggag catcctgaga caaattctgc gatctgattt ccatcctctg tcacagaaaa
      661 gtgcaatcct ggtctctcca gcatcttccc tagttaccca ggacaacaca tcgagaatta
      721 aaagctttct taaatttctc ttggccccac ccatgatcat tccgcacaaa tatcttgctc
      781 ttgcagttca ataaatgatt acccttgcac ttt
//
From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Human immunodeficiency virus type 1, viral sample FLPE3, V3 region.
Date: 7 Apr 92 10:03:13 GMT
Distribution: bionet
Checksum: 00270     3

LOCUS       HIVFLPE3      308 bp ss-RNA             VRL       07-APR-1992
DEFINITION  Human immunodeficiency virus type 1, viral sample FLPE3, V3 region.
ACCESSION   M90888
KEYWORDS    .
SOURCE      Human immunodeficiency virus type 1 (HIV-1), M13 clone A03 of DNA
            ID 6070.
  ORGANISM  Human immunodeficiency virus type 1
            Viridae; ss-RNA enveloped viruses; Positive strand RNA virus;
            Retroviridae; Lentivirinae.
REFERENCE   1  (bases 1 to 308)
  AUTHORS   Ou,C.Y., Ciesielski,C.A., Myers,G., Bandea,C.I., Luo,C.C.,
            Korber,B.T., Mullins,J.I., Schochetman,G., Berkelman,R.L.,
            Economou,A.N., Witte,J.J., Furman,L.J., Satten,G.A., Curran,J.W.
            and Jaffe,H.W.
  TITLE     Molecular Epidemiology of HIV Transmission in a Dental Practice
  JOURNAL   Science (1992) In press
  STANDARD  full automatic
COMMENT     Kindly submitted in computer readable form by the CDC (Centers for
            Disease Control), Atlanta, GA.
            The sequence in this entry is one of 6 clone sequences over the V3
            region obtained by the CDC from patient "E" of a Florida dentist.
            Please note that for this set of sequences, clone numbers from the
            V3 region do not correspond with similar numbers from the V4C3V5
            region.
FEATURES             Location/Qualifiers
     CDS             <1..>308
                     /note="env polyprotein (AA at 1)"
                     /codon_start=1
                     /translation="EEIVIRSANFTDNAKIIIVQLNASVEINCTRPNNNTRKGIHIGP
                     GRAFYATGEIIGDIRQAHCNISGEKWNNTLKQVVTKLREQFGNKTIIFNHSSGGDPEI
                     V"
BASE COUNT      135 a     42 c     59 g     72 t
ORIGIN      near the C2-V3 boundary
        1 gaagagatag taattagatc tgccaatttc acagacaatg ctaaaattat aatagtacag
       61 ctgaatgcat ctgtagaaat taattgtaca agacccaaca acaatacaag aaaaggtata
      121 catataggac cagggagggc attttatgca acaggagaaa taataggaga tataagacaa
      181 gcacattgta acattagtgg agaaaaatgg aataatactt taaaacaggt agttacaaaa
      241 ttaagagaac aatttgggaa taaaacaata atctttaatc actcctcagg aggggaccca
      301 gaaattgt
//
From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Human immunodeficiency virus type 1, viral sample LC03.DA04, V3
Date: 7 Apr 92 10:05:13 GMT
Distribution: bionet
Checksum: 11670     3

LOCUS       HIVFLQ74      327 bp ss-RNA             VRL       07-APR-1992
DEFINITION  Human immunodeficiency virus type 1, viral sample LC03.DA04, V3
            region.
ACCESSION   M90925
KEYWORDS    .
SOURCE      Human immunodeficiency virus type 1 (HIV-1), M13 clone DA04 of DNA
            ID 5244.
  ORGANISM  Human immunodeficiency virus type 1
            Viridae; ss-RNA enveloped viruses; Positive strand RNA virus;
            Retroviridae; Lentivirinae.
REFERENCE   1  (bases 1 to 327)
  AUTHORS   Ou,C.Y., Ciesielski,C.A., Myers,G., Bandea,C.I., Luo,C.C.,
            Korber,B.T., Mullins,J.I., Schochetman,G., Berkelman,R.L.,
            Economou,A.N., Witte,J.J., Furman,L.J., Satten,G.A., Curran,J.W.
            and Jaffe,H.W.
  TITLE     Molecular Epidemiology of HIV Transmission in a Dental Practice
  JOURNAL   Science (1992) In press
  STANDARD  full automatic
COMMENT     Kindly submitted in computer readable form by the CDC (Centers for
            Disease Control), Atlanta, GA.
            The sequence in this entry is one of 6 clone sequences over the V3
            region obtained by the CDC from this Florida control sample.
            Please note that for this set of sequences, clone numbers from the
            V3 region do not correspond with similar numbers from the V4C3V5
            region.
FEATURES             Location/Qualifiers
     CDS             <1..>327
                     /note="env polyprotein (AA at 1)"
                     /codon_start=1
                     /translation="LAEKEVIIRSENFTDNTKTIIVQLNTSVTINCTRPGNNTRKSIT
                     MGPGKVFYAGEIIGDIRQAHCNLSRAAWNDTLKQIVGKLQEQFGNKTIIFNHSSGGDP
                     EIVMHSF"
BASE COUNT      140 a     48 c     62 g     77 t
ORIGIN      near the C2-V3 boundary
        1 ctagcagaaa aagaggtaat aattagatct gaaaatttca cggacaatac taaaaccata
       61 atagtacagc tgaatacatc tgtaacaatt aattgtacaa gacctggcaa caatacaaga
      121 aaaagtataa ctatgggacc ggggaaagta ttttatgcag gagaaataat aggagatata
      181 agacaagcac attgtaacct tagtagagca gcatggaatg acactttaaa acagatagtt
      241 ggaaaattac aagaacaatt tgggaataaa acaataatct ttaatcactc ctcaggaggg
      301 gacccagaaa ttgtaatgca cagtttt
//
From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Coprinus cinereus tryptophan synthetase (TRP1) gene, exon 9.
Date: 8 Apr 92 10:00:36 GMT
Article-I.D.: genbank.Apr.8.03.00.35.1992.16084
Distribution: bionet
Checksum: 39761     2

LOCUS       CCITRP09      123 bp ds-DNA             PLN       08-APR-1992
DEFINITION  Coprinus cinereus tryptophan synthetase (TRP1) gene, exon 9.
ACCESSION   M91660 M25225
KEYWORDS    tryptophan synthetase.
SEGMENT     9 of 10
SOURCE      C.cinereus (strain H9 X 12890/3; dikaryon stage) DNA, clone
            pCc1003.
  ORGANISM  Coprinus cinereus
            Eukaryota; Fungi; Eumycota; Basidiomycotina; Hymenomycetes;
            Agaricales; Coprinaceae.
REFERENCE   1  (bases 1 to 123)
  AUTHORS   Skrzynia,C., Binninger,D.M., Alspaugh,J.A.II. and Pukkila,P.J.
  TITLE     Molecular characterization of TRP1, a gene coding for tryptophan
            synthetase in the basidiomycete Coprinus cinereus
  JOURNAL   Gene 81, 73-82 (1989)
  STANDARD  simple staff_review
COMMENT     Draft entry and computer-readable sequence for [Gene, 81 (1989)
            73-82] kindly submitted
            by P.J.Pukkila, 14-JUN-1989.
FEATURES             Location/Qualifiers
     intron          order(M91659:597..625,1..22)
                     /number=8
                     /gene="TRP1"
     exon            23..99
                     /number=9
                     /gene="TRP1"
BASE COUNT       27 a     37 c     27 g     32 t
ORIGIN      Unreported.
        1 ttcgacaccg actccccttc agcgctcgag tcgtcgcacg ccatctggga aggtgtcaag
       61 atcgctaaat cactgccaaa ggataaggac atcgtcattg tacgtttgac tctgcttcct
      121 ctt
//
From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Mus musculus homeobox protein (Hox-1.11) gene, partial cds.
Date: 7 Apr 92 10:05:52 GMT
Distribution: bionet
Checksum: 60507     2

LOCUS       MUSHOX111     371 bp ds-DNA             ROD       07-APR-1992
DEFINITION  Mus musculus homeobox protein (Hox-1.11) gene, partial cds.
ACCESSION   M87801
KEYWORDS    DNA binding protein; homeobox protein; transcriptional regulator.
SOURCE      Mus musculus (strain ICR Swiss) (library: 1GEM-11) adult liver DNA.
  ORGANISM  Mus musculus
            Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
            Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
REFERENCE   1  (bases 1 to 371)
  AUTHORS   Nazarali,A., Kim,Y. and Nirenberg,M.
  TITLE     Hox-1.11 and Hox-4.9 homeobox genes
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 89, 2883-2887 (1992)
  STANDARD  unannotated staff_entry
FEATURES             Location/Qualifiers
     intron          <1..54
                     /gene="Hox-1.11"
     CDS             55..370
                     /product="homeobox protein"
                     /gene="Hox-1.11"
                     /codon_start=3
                     /translation="SLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVE
                     IAALLDLTERQVKVWFQNRRMKHKRQTQCKENQNSEGKFKNLEDSDKVEEDEEEKSLF
                     EQA"
                     /partial
     misc_feature    90..269
                     /note="homeodomain"
                     /gene="Hox-1.11"
BASE COUNT      110 a     83 c    104 g     74 t
ORIGIN      Chromosome 6
        1 gacccttcca ccttcaactg tatgtgtgtc tcttgttggt ttccctttct gcagaatccc
       61 tggaaatagc tgatggcagc ggcgggggat ccaggcgtct gagaaccgcg tacaccaaca
      121 ctcagctttt ggagctggaa aaggaatttc atttcaacaa gtacctttgc agaccccgca
      181 gggtggaaat cgccgcgctg ctggatttga ccgagagaca agtgaaagtg tggtttcaga
      241 accggagaat gaagcataag aggcaaaccc agtgcaagga gaaccaaaac agcgaaggga
      301 aatttaaaaa cctggaggac tcggacaaag tggaggaaga cgaggaagag aagtcactct
      361 ttgagcaagc c
//
From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Gallus gallus proto-oncogene c-myb mRNA, 5' flank.
Date: 9 Apr 92 10:02:36 GMT
Distribution: bionet
Checksum: 03819     2

LOCUS       CHKCMYBC      130 bp ss-mRNA            VRT       09-APR-1992
DEFINITION  Gallus gallus proto-oncogene c-myb mRNA, 5' flank.
ACCESSION   M24375
KEYWORDS    nuclear protein.
SOURCE      Gallus gallus cDNA to mRNA.
  ORGANISM  Gallus gallus
            Eukaryota; Animalia; Chordata; Vertebrata; Aves; Neornithes;
            Neognathae; Galliformes; Phasianidae.
REFERENCE   1  (bases 1 to 130)
  AUTHORS   Hahn,S.L., Hahn,M. and Hayward,W.S.
  TITLE     Structural organization of upstream exons and distribution of
            transcription start sites in the chicken c-myb gene
  JOURNAL   Mol. Cell. Biol. 9, 837-843 (1989)
  STANDARD  simple staff_entry
FEATURES             Location/Qualifiers
     misc_recomb     48^49
                     /note="acceptor splice site"
                     /gene="c-myb"
     misc_recomb     120^121
                     /note="donor splice site"
                     /gene="c-myb"
BASE COUNT       42 a     15 c     27 g     46 t
ORIGIN
        1 attgtgatat taattatttt aattgtttat ttatttttaa tgattcagga tgagaaactg
       61 aagaaacttg tggaacagaa tggcacagaa gactggaaag tcattgccag tttccttcct
      121 gtaggtagac
//
From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Human immunodeficiency virus type 1, viral sample FLPB9, V3 region.
Date: 7 Apr 92 10:02:40 GMT
Distribution: bionet
Checksum: 35819     2

LOCUS       HIVFLPB9      183 bp ss-RNA             VRL       07-APR-1992
DEFINITION  Human immunodeficiency virus type 1, viral sample FLPB9, V3 region.
ACCESSION   M90870
KEYWORDS    .
SOURCE      Human immunodeficiency virus type 1 (HIV-1), M13 clone A09 of DNA
            ID 5592.
  ORGANISM  Human immunodeficiency virus type 1
            Viridae; ss-RNA enveloped viruses; Positive strand RNA virus;
            Retroviridae; Lentivirinae.
REFERENCE   1  (bases 1 to 183)
  AUTHORS   Ou,C.Y., Ciesielski,C.A., Myers,G., Bandea,C.I., Luo,C.C.,
            Korber,B.T., Mullins,J.I., Schochetman,G., Berkelman,R.L.,
            Economou,A.N., Witte,J.J., Furman,L.J., Satten,G.A., Curran,J.W.
            and Jaffe,H.W.
  TITLE     Molecular Epidemiology of HIV Transmission in a Dental Practice
  JOURNAL   Science (1992) In press
  STANDARD  full automatic
COMMENT     Kindly submitted in computer readable form by the CDC (Centers for
            Disease Control), Atlanta, GA.
            The sequence in this entry is one of 13 clone sequences over the V3
            region obtained by the CDC from patient "B" of a Florida dentist.
            Please note that for this set of sequences, clone numbers from the
            V3 region do not correspond with similar numbers from the V4C3V5
            region.
FEATURES             Location/Qualifiers
     CDS             <1..>183
                     /note="env polyprotein (AA at 1)"
                     /codon_start=1
                     /translation="GDIRQAHCNISREKWDNTLEQVKTKLKEQFGKTIIFKHSSGGDP
                     EIVMHSFNCGGEFFYCN"
BASE COUNT       76 a     22 c     37 g     48 t
ORIGIN      near the C2-V3 boundary
        1 ggagatataa gacaagcaca ttgtaacatt agtagagaaa aatgggataa tactttagaa
       61 caggtaaaaa caaaattaaa agaacaattt ggtaaaacaa taatctttaa gcactcctca
      121 ggaggggacc cagaaattgt aatgcacagt tttaattgtg gaggggaatt tttctactgt
      181 aat
//
From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Human T-cell lymphotropic virus type I polymerase gene sequence.
Date: 7 Apr 92 10:05:27 GMT
Distribution: bionet
Checksum: 54244     2

LOCUS       HL1POLB       140 bp ds-DNA             VRL       07-APR-1992
DEFINITION  Human T-cell lymphotropic virus type I polymerase gene sequence.
ACCESSION   M76755
KEYWORDS    polymerase.
SOURCE      Human T-cell lymphotropic virus type I DNA.
  ORGANISM  Human T-cell lymphotropic virus type I
            Viridae; ss-RNA enveloped viruses; Positive strand RNA virus;
            Retroviridae; Oncovirinae; Type C oncovirus group;
            Mammalian type C oncoviruses.
REFERENCE   1  (bases 1 to 140)
  AUTHORS   Sherman,M.P., Saksena,N.K., Dube,D.K., Yanagihara,R. and
            Poiesz,B.J.
  TITLE     Evolutionary insights on the origin of human T-cell
            lymphoma/leukemia virus type I (HTLV-I) derived from sequence
            analysis of a new HTLV-I variant from papua new guinea
  JOURNAL   J. Virol. 66, 2556-2563 (1992)
  STANDARD  full staff_review
FEATURES             Location/Qualifiers
     misc_feature    1..140
                     /function="polymerase gene"
                     /note="the sequence was derived from PCR amplified DNA
                     after cloning into the M13 vector and corresponds to the
                     region designated above in the prototype ATK isolate
                     numbered according to the EMBL system"
                     /note="base 4779-4918"
                     /citation=[1]
BASE COUNT       43 a     36 c     21 g     40 t
ORIGIN
        1 gacttgtgga acgctctaat ggcatcctta aaactttatt atataagtac tttaccgaca
       61 gacccaacct acctatggag aatgctctat ccatagcctt atggacaatt aaccacctga
      121 atgtgttaac ccattgccac
//
From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Human immunodeficiency virus type 1, viral sample LC03.DA07, V3
Date: 7 Apr 92 10:05:14 GMT
Distribution: bionet
Checksum: 24198     3

LOCUS       HIVFLQ77      327 bp ss-RNA             VRL       07-APR-1992
DEFINITION  Human immunodeficiency virus type 1, viral sample LC03.DA07, V3
            region.
ACCESSION   M90926
KEYWORDS    .
SOURCE      Human immunodeficiency virus type 1 (HIV-1), M13 clone DA07 of DNA
            ID 5244.
  ORGANISM  Human immunodeficiency virus type 1
            Viridae; ss-RNA enveloped viruses; Positive strand RNA virus;
            Retroviridae; Lentivirinae.
REFERENCE   1  (bases 1 to 327)
  AUTHORS   Ou,C.Y., Ciesielski,C.A., Myers,G., Bandea,C.I., Luo,C.C.,
            Korber,B.T., Mullins,J.I., Schochetman,G., Berkelman,R.L.,
            Economou,A.N., Witte,J.J., Furman,L.J., Satten,G.A., Curran,J.W.
            and Jaffe,H.W.
  TITLE     Molecular Epidemiology of HIV Transmission in a Dental Practice
  JOURNAL   Science (1992) In press
  STANDARD  full automatic
COMMENT     Kindly submitted in computer readable form by the CDC (Centers for
            Disease Control), Atlanta, GA.
            The sequence in this entry is one of 6 clone sequences over the V3
            region obtained by the CDC from this Florida control sample.
            Please note that for this set of sequences, clone numbers from the
            V3 region do not correspond with similar numbers from the V4C3V5
            region.
FEATURES             Location/Qualifiers
     CDS             <1..>327
                     /note="env polyprotein (AA at 1)"
                     /codon_start=1
                     /translation="LAEKEVVIRSENFTDNTKTIIIQLNTSVTINCTRPGNNTRKSIT
                     MGPGKVFYAGEIIGDIRQAHCNLSRTAWNDTLKQIVGKLQEQFGNKTIVFNHSSGGDP
                     EIVMHSF"
BASE COUNT      141 a     48 c     62 g     76 t
ORIGIN      near the C2-V3 boundary
        1 ctagcagaaa aagaggtagt aattagatct gaaaatttca cggacaatac taaaaccata
       61 ataatacagc taaatacatc tgtaacaatt aattgtacaa gaccgggcaa caatacaaga
      121 aaaagtataa ctatgggacc ggggaaagta ttttatgcag gagaaataat aggagatata
      181 agacaagcac attgtaacct tagtagaaca gcatggaatg acactttaaa acagatagtt
      241 ggaaaattac aagaacaatt tgggaataaa acaatagtct ttaatcactc ctcaggaggg
      301 gacccagaaa ttgtaatgca cagtttt
//