From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Barley mild mosaic virus RNA 1, polyprotein precursor, partial
Date: 3 Jan 93 22:11:40 GMT
Distribution: bionet
Checksum: 16707 8

LOCUS       BMMNA1       3464 bp ss-RNA             VRL       23-DEC-1992
DEFINITION  Barley mild mosaic virus RNA 1, polyprotein precursor, partial
            sequence.
ACCESSION   D10947
KEYWORDS    capsid protein; polymerase; polyprotein; proteinase.
SOURCE      Barley mild mosaic virus (strain Na1) cDNA to genomic RNA, clones
            Na1SK2 and Na1SK15.
  ORGANISM  Barley mild mosaic virus
            Viridae; ss-RNA nonenveloped viruses; Rod-shaped ss-RNA viruses.
REFERENCE   1  (bases 1 to 3464)
  AUTHORS   Kashiwazaki,S., Nomura,K., Kuroda,H., Ito,K. and Hibino,H.
  TITLE     Sequence analysis of the 3'-terminal halves of RNA 1 of two strains
            of barley mild mosaic virus
  JOURNAL   J. Gen. Virol. 73, 2173-2181 (1992)
  STANDARD  full automatic
COMMENT     Submitted (15-Apr-1992) to DDBJ by: Satoshi Kashiwazaki Virology
            Department Scottish Crop Research Institute Invergowrie, Dundee DD2
            5DA U.K. Phone:  382-562731 x2125 Email:  mail@scri.sari.ac.uk Fax:
               382-562426.
FEATURES             Location/Qualifiers
     polyA_signal    3379..3383
     CDS             <1..3126
                     /product="viral polyprotein precursor"
                     /codon_start=1
                     /translation="HDPETIAKLGGEVGFRMNRYDLRQVGATRYINPKAQTSAATLEG
                     MTMKPMSAFTIDSAKMVGFIKTAKDTLNCILYGDWIIAPAHIQQGEGDITFIFQHTQF
                     TTTTERLASYGIRQFKGLDLVVIRRPQQIRAVKKDMRASILDTPTEVQMLYLSTKGGK
                     YQVSTSAVCFPHYNNRWGHVISTAEGMCGCIVFNPTTNHIVGIHVSYNDTRRRNEFQA
                     FTSDVLTTINAPGHEIPFSPWVFDWKFCGYTTKPRNMQSAPSTLERLNINATGFGFKL
                     NAQGIKPAMLRSTETFSREFPNTQFKLIGEVKKGLIDKHTITGENPYFLEFLNTFKPY
                     QWVQAFMDEYAPSILAYDAYFKDLKKYDRPPHASVFCEDTLTKAKHKMIKILEEAGMG
                     RTLVRTTEQVLLDMAWTTSGGPLYHGKKIDIVQHLSDDELVQFSEACQQALITGTLDG
                     VWNGSLKAELRSSQKILERKTRVFTAAPITSLIAMKYYVDDFNKQFYKTHLKAPHTVG
                     INKFNRGWQNLYEKLNKPGWTHGSGDGSRFDSSIDGFLFDVIKDIRKHFMDAEHHKQL
                     DTIYEEIVNTKICLANGLVIQKNCGNNSGQPSTVVDNTLALMTSFLYAYARLTGDDTF
                     ELMDENFVFVCNGDDNKFAMSPSFMVKFGCDFSPFLSELGLTYEFDEATEDICENPYM
                     SLTMVRTSFGIGFSLSIERIVAILQWSRAGGVLHAYLSGIAALFESFNTPKLFNLVHT
                     YLLWLVTEHEEELFSMMELKDMFMPLPTKEQIALLHYVGTEPIMEETYLQSGKDDPDP
                     IVPPVSDTDLTNMAAAPPDNRRSRAVVPRGTSDWNLPEPKMRMLGFKSKINIETLADV
                     PEGYMNTFASVATETQRRKWEEATRGDFGITDNEKWEKLLIAACIYFADNGTSPNFDE
                     ELTMEVNGGLNSIKEYPVRPFVVRAKKISTLRRIFRCYSIETKLMFVKLRRVPQWAIK
                     HGCLDEIVFDFMIPDQFTSRTALETLKQTKLAAIGVGTSNSLLTSEQTNMRTTETRRR
                     NDYDGHEALLR"
BASE COUNT      981 a    932 c    756 g    795 t
ORIGIN      
        1 cacgatcctg agactatcgc caaacttgga ggcgaagttg gtttcaggat gaacaggtat
       61 gatctacgcc aagttggtgc cacacgatac atcaacccaa aagcacaaac atccgcagca
      121 acgcttgaag gcatgaccat gaaaccaatg agtgctttca ccattgacag cgcgaagatg
      181 gtcggtttta ttaaaactgc aaaagacaca ctcaactgca ttctatatgg cgactggatc
      241 atagctcccg cacacataca gcagggcgaa ggggacataa cattcatctt ccagcacaca
      301 cagtttacaa ctaccaccga gcgtttagca agctacggga ttcgacagtt caaaggcctt
      361 gaccttgttg tcattcgacg cccccagcag atacgcgcag ttaagaagga catgcgcgcc
      421 agcattcttg acacacccac tgaagtgcaa atgctctacc tatcaaccaa aggcggcaag
      481 tatcaagtgt ccacgtctgc tgtgtgtttc ccacactata acaaccgatg gggacacgtc
      541 atttcaacag ccgaaggcat gtgcggctgc attgttttca accccaccac aaaccacatt
      601 gttgggattc acgtctccta caatgacacg cgcagaagaa acgagtttca agcttttaca
      661 agtgacgttc taacaacaat caacgcacca ggacacgaaa tacccttcag tccatgggtt
      721 tttgactgga agttttgcgg gtacacaacg aaaccacgga acatgcaaag tgcaccaagc
      781 acgcttgaac gactcaacat caacgccaca ggttttggtt tcaaactcaa tgcacagggg
      841 atcaaacctg ccatgcttcg ctccacagaa acattctcca gggagttccc gaacacacag
      901 ttcaagctca tcggagaagt gaagaaggga ctcattgata aacacacgat cacaggagag
      961 aacccctatt tccttgaatt cctcaacaca ttcaaaccat accaatgggt acaagctttc
     1021 atggacgagt acgcaccctc catccttgcc tacgacgcgt acttcaagga cttgaagaag
     1081 tacgataggc cgccacacgc aagtgtgttc tgtgaggaca cattgaccaa agccaaacac
     1141 aaaatgatta agattctcga agaggcaggt atgggcagaa ccctagtacg aaccaccgag
     1201 caagtcttac ttgacatggc ctggaccacc tctggtggac ccttgtacca tggcaagaag
     1261 attgacattg tacaacactt atctgatgat gagcttgtgc aattcagtga agcctgccaa
     1321 caggctctca tcactggaac gctagatgga gtctggaacg gatcactcaa agccgagctc
     1381 cgctcttcgc agaagatcct cgagcggaaa actcgtgtct tcactgctgc ccccataaca
     1441 agtctaattg cgatgaaata ctacgtggac gatttcaaca aacaattcta caagactcat
     1501 ctcaaagcac cacatacagt tggtatcaac aagtttaacc gcggatggca gaatctctat
     1561 gagaagctca acaaacctgg atggacgcat gggagtgggg atggctccag gtttgatagc
     1621 tcgattgatg gattcctctt cgatgtcatc aaagacatcc gaaagcactt catggatgca
     1681 gaacaccaca agcagcttga cacaatctat gaagaaattg ttaacacgaa gatatgttta
     1741 gcaaatggtc tagtcatcca aaagaattgt ggaaacaata gcggacagcc gagcactgtc
     1801 gtcgacaaca cactcgcact catgacttct tttctttatg catacgcccg actcactgga
     1861 gatgacacct ttgaactcat ggacgaaaac ttcgttttcg tctgcaacgg cgacgacaac
     1921 aagttcgcca tgtcacccag cttcatggtg aagttcgggt gcgatttctc cccattcctt
     1981 tctgagctag ggctaaccta cgagttcgac gaagccaccg aagacatctg tgaaaacccc
     2041 tacatgtcct tgaccatggt tcgcacctcg ttcgggatcg gcttctctct ctccatcgaa
     2101 cgcatcgttg caatcctgca atggagccgt gctggtggag tcctgcatgc ctatctctct
     2161 ggcattgctg ctcttttcga gtccttcaac acacccaaac tcttcaacct cgtgcacaca
     2221 tacctcctct ggctagtcac ggagcatgag gaggaacttt tttcgatgat ggaactcaag
     2281 gatatgttca tgcctctgcc cactaaggaa cagatagcct tgttgcacta cgtaggcact
     2341 gaacccatca tggaggaaac atatctgcaa tcaggaaaag atgatccaga tcccattgtt
     2401 cctccagttt ctgacactga tctcacaaac atggctgcag caccacccga caacagaagg
     2461 tcgcgcgccg tcgtcccccg tgggaccagt gactggaatt tgcctgaacc caagatgcga
     2521 atgctaggtt tcaagtccaa aatcaacata gaaacgctcg ccgatgtccc cgaagggtat
     2581 atgaatacct ttgcgtccgt tgcaactgaa acgcaacgta ggaaatggga agaggccacg
     2641 cgtggtgatt ttggcatcac cgacaacgag aagtgggaaa agctgctcat tgctgcctgc
     2701 atatatttcg cagacaatgg cacttcacca aacttcgatg aggagctcac tatggaagtc
     2761 aatggcggtc tcaactccat caaagagtat cccgtccgcc cttttgttgt cagggccaaa
     2821 aagatctcca cactgcgcag gatctttcgc tgttactcca ttgagacgaa actaatgttc
     2881 gtgaagctga ggcgcgtacc acaatgggct ataaagcacg ggtgccttga tgaaatcgtc
     2941 ttcgatttca tgatcccaga ccagttcact tccagaactg cactcgaaac actgaagcag
     3001 accaagcttg ctgccattgg tgttggcaca agcaattctc tcctcacctc cgaacagacg
     3061 aacatgagaa ccactgaaac ccgaaggcgc aacgactacg acggtcacga ggcgcttctc
     3121 cggtaggtat ctcacacagt tccatttcct tttcagcaat gcatttaaac acgcttccaa
     3181 ttacatcaag cgtcaagagt tgttcccgct tgcagttaat ccttatgggg tggcactttg
     3241 tgttatgcaa tggacagttc aatgacgcaa tcaaccatca ttggttggtg acaacgcagc
     3301 atgttctttc ttttcacatc aagcgacctg cacatcgccc gcttacagct aatcctacct
     3361 gaggatggca ctctgtgtta tgtaatggaa tgtgcaatct cgcaaccaac cgtcattggt
     3421 tgatggtgcg gccaaaaccc gcactcctgt ataccggaaa ggtt
//