From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Rhesus macaque polyoma virus agnoprotein (complete cds) minor
Date: 31 Dec 92 01:40:50 GMT
Distribution: bionet
Checksum: 08488 5

LOCUS       SV4STA2      1125 bp ds-DNA             VRL       17-DEC-1992
DEFINITION  Rhesus macaque polyoma virus agnoprotein (complete cds) minor
            structural protein VP2 (5' end) and small t antigen (5' end) genes.
ACCESSION   M99352
KEYWORDS    agnoprotein; enhancer; minor structural protein VP2;
            small t-antigen.
SOURCE      Rhesus macaque polyomavirus (strain Br91) DNA.
  ORGANISM  Rhesus macaque polyomavirus
            Viridae; ds-DNA nonenveloped viruses; Papovaviridae;
            Polyomaviruses.
REFERENCE   1  (sites)
  AUTHORS   van Heuverswyn,H. and Fiers,W.
  TITLE     Nucleotide sequence of the Hind-C fragment of Simian Virus 40 DNA:
            comparison of the 5'-untranslated region of wild-type virus and of
            some deletion mutants
  JOURNAL   Eur. J. Biochem. 100, 51-60 (1979)
  STANDARD  full automatic
REFERENCE   2  (bases 1 to 1125)
  AUTHORS   Ilyinskii,P.O., Daniel,M.D., Horvath,C. and Desrosiers,R.C.
  TITLE     Genetic analysis of simian virus 40 from brains and kidneys of
            macaque monkeys
  JOURNAL   J. Virol. 66, 6353-6360 (1992)
  STANDARD  full automatic
FEATURES             Location/Qualifiers
     variation       replace(30,"c")
                     /citation=[1]
                     /note="nucleotide 4959 in SV40 strain 776"
     variation       replace(109,"a")
                     /citation=[1]
                     /note="nucleotide 5038 in SV40 strain 776"
     enhancer        complement(421..492)
                     /note="72-bp repeat"
     variation       replace(complement(492^493),
                     "ggtgtggaaagtccccaggctccccagcaggcagaagtatgcaaagcatgcatctca
                     attagtcagcaacca")
                     /citation=[1]
                     /partial
                     /note="2nd 72bp repeat (exists in SV40 strain 776,
                     nucleotides 179-250)"
     variation       replace(658,"c")
                     /citation=[1]
                     /note="nucleotide 416 in SV40 strain 776"
     variation       replace(954,"c")
                     /citation=[1]
                     /note="nucleotide 712 in SV40 strain 776"
     variation       replace(974,"t")
                     /citation=[1]
                     /note="nucleotide 732 in SV40 strain 776"
     variation       replace(1010,"g")
                     /citation=[1]
                     /note="nucleotide 768 in SV40 strain 776"
     CDS             complement(1..234)
                     /partial
                     /note="partial"
                     /product="small t antigen"
                     /codon_start=1
                     /translation="MDKVLNREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPD
                     KGGDEEKMKKMNTLYKKMEDGVKYAHQPDFGGFW"
     CDS             577..765
                     /product="agnoprotein"
                     /codon_start=1
                     /translation="MVLRRLSRQASVKVRRSWTESKKTAQRFFVFVLELLLQFCEGED
                     TVDGKRKKPERLTEKPES"
     CDS             804..1125
                     /partial
                     /note="partial"
                     /product="minor structural protein VP2"
                     /codon_start=1
                     /translation="MGAALTLLGDLIATVSEAAAATGFSVAEIAAGEAAAAIEVQLAS
                     VATVEGLTTSEAIAAIGLTPQAYAVISGAPAAIAGFAALLQTVTGVSAVAQVGYRFFS
                     DWDHK"
BASE COUNT      268 a    251 c    270 g    336 t
ORIGIN      
        1 ccagaagcct ccaaagtcag gttgatgagc atattttact ccatcttcca ttttcttgta
       61 cagagtattc attttcttca ttttttcttc atctcctcct ttatcagggt gaaactcctt
      121 gcattttttt aaatatgcct ttctcatcag aggaatattc ccccaggcac tcctttcaag
      181 acctagaagg tccattagct gcaaagattc ctctctgttt aaaactttat ccatctttgc
      241 aaagcttttt gcaaaagcct aggcctccaa aaaagcctcc tcactacttc tggaatagct
      301 cagaggccga ggcggcctcg gcctctgcat aaataaaaaa aattagtcag ccatggggcg
      361 gagaatgggc ggaactgggc ggagttaggg gcgggatggg cggagttagg ggcgggacta
      421 tggttgctga ctaattgaga tgcatgcttt gcatacttct gcctgctggg gagcctgggg
      481 actttccaca ccctaactga cacacattcc acagctggtt ctttccgcct cagaaggtac
      541 ctaaccaagt tcctctttca gaggttattt caggccatgg tgctgcgccg gctgtcacgc
      601 caggcctccg ttaaggttcg taggtcatgg actgaaagta aaaaaacagc tcaacgcttt
      661 tttgtgtttg ttttagagct tttgctgcaa ttttgtgaag gggaagatac tgttgacggg
      721 aaacgcaaaa aaccagaaag gttaactgaa aaaccagaaa gttaactggt aagtttagtc
      781 tttttgtctt ttatttcagg tccatgggtg ctgctttaac actgttgggg gacctaattg
      841 ctactgtgtc tgaagctgct gctgctactg gattttcagt agctgaaatt gctgctggag
      901 aggccgctgc tgcaattgaa gtgcaacttg catctgttgc tactgttgaa ggcttaacaa
      961 cctctgaggc aatagctgct ataggcctca ctccacaggc ctatgctgtc atatctgggg
     1021 ctcctgctgc tatagctgga tttgcagctt tactgcaaac tgtgactggt gtgagcgctg
     1081 ttgctcaagt ggggtataga ttttttagtg actgggatca caaag
//