From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Garlic mosaic virus genes for RNA replicase and coat protein.
Date: 29 Dec 92 00:50:23 GMT
Distribution: bionet
Checksum: 48826 8

LOCUS       GCVRRCP      3459 bp ss-RNA             VRL       04-DEC-1992
DEFINITION  Garlic mosaic virus genes for RNA replicase and coat protein.
ACCESSION   D11161
KEYWORDS    RNA replicase; coat protein.
SOURCE      Garlic mosaic virus cDNA to genomic RNA.
  ORGANISM  Garlic mosaic virus
            Viridae; ss-RNA nonenveloped viruses; Carlaviridae.
REFERENCE   1  (bases 1 to 3459)
  AUTHORS   Sumi,S.
  JOURNAL   Unpublished (1992)
  STANDARD  full automatic
COMMENT     Submitted (19-May-1992) to DDBJ by: Shin-ichiro Sumi Institute for
            Biotechnolgy Research Wakunaga Pharmaceutical Co. 1624
            Shimokotachi, Koda-cho Takata-Gun, Hiroshima 729-64 Japan Phone:
            082645-2331 Email:  tmiyake@niguts.ddbj.nig.ac.jp Fax:
            082645-4351.
FEATURES             Location/Qualifiers
     CDS             <1..941
                     /product="RNA replicase"
                     /codon_start=3
                     /translation="ENHANRSCSDWLADVGLVFSKSQICTKWDNRFRSAKAAQTIVCF
                     QHSVLIRFAPYMRYIEKKVHEVLPKQYYIHSGKGLDELNQWVCDNKFVGFCTESDYEA
                     FDASQDQYIMAFEIALMEYLGLPRSLINDYKYIKTHLGCKMGALAIMRFSGEASTFLF
                     NTLANMLFTFLRYDLNGKESICFAGDDMCANRKLRVSLRHEDFLGKLKLKAKVAFTRR
                     PTFCGWNLTFFGIYKKPQLVFERMCIAKETNNLQNCIDNYAIEISFAYVKGEMAVCHM
                     DPEELDAFYNCVRVVVKSRHLLKSNVRELFKNEVET"
     CDS             972..1682
                     /product="ORF(II)"
                     /codon_start=1
                     /translation="MDVFCKVLIECGFHRLECTGNKCKVVLGVPGCGKSSCIRKLINL
                     DSRFIAATFGAPDPLNVTGRRIHSVGELAKIDCTGKFLLLDEFQQGGFEELKPFALFG
                     DVCQFFDSDRPCPIADWCKTLSHRVNKPTCDFLREFGFEITSSKEGTLVFGGLYEEEL
                     LGVVITYCSQVSNLLKAHQVDHFTLASCRGSEFPKVCLCLSDSIIQREDLAKFYVCAT
                     RSRGDLLILTPDASKPTT"
     CDS             1660..1992
                     /product="ORF(III)"
                     /codon_start=1
                     /translation="MPLSPPPDHTKTYFAGAIGVCVAICLYTLTRSTLPHVGDNIHSL
                     PHGGCYQDGTKRIIYNSPARNFPSSNLVSNLASPFCVLAIIIGLICLSEKFRPSSRTR
                     ISCNCNHS"
     CDS             1971..2165
                     /product="ORF(IV)"
                     /codon_start=1
                     /translation="MQLQPFIVLVTSLLVTLLFCYSFDNLRTERCTVIITGESVKLIG
                     CEFTKDFIDFAKQAKPFGSL"
     CDS             2190..3074
                     /product="coat protein"
                     /codon_start=1
                     /translation="MANEEEELSRMQNLPTRDPGTIPEQERSKAVNDVGVMDRENFEA
                     VLRRSEDRFNKLKEKCLSELSSVRVTNCGWESGRPKAQLADSLKGDASNIFTRPSMDA
                     LLVRNYAPESNNMATAEELAKISAKIQALGAPEECLAEVFWDICMYCTTAGSSPNVNP
                     KGTISVGGKVVTRDMVVAVIKEYSTLRQVCRCYAPVVWNYMLLNEQPPANWDSKGFTE
                     NTKYAAFDTFDAVTNKAAIQPLEGLIRAPTDSERIAFATHKKLALAKNSRYSNTSAEV
                     TGGFFGCFPKHNFRENRC"
     CDS             3035..3364
                     /product="ORF(VI)"
                     /codon_start=1
                     /translation="MFSKTQFQRESMLIKQRTYRRLLRAIFKLHTNKNCVDVIDIIVN
                     KIVCGRTGASKYARARRAKSIGRCPRCFRCAPGFYFTKNCDTKTCTPGISYNEKVKNF
                     IVDGVTM"
BASE COUNT      946 a    696 c    809 g   1008 t
ORIGIN      3' portion of GCV genome.
        1 tagagaatca cgcaaatcgg tcctgttcgg attggttagc tgacgtgggt ctagtttttt
       61 cgaaaagtca gatttgcacg aagtgggaca atcgctttcg gtctgcaaaa gcggcacaaa
      121 cgattgtttg ctttcagcac tcagtgctaa taaggtttgc tccctacatg cgctatattg
      181 aaaagaaagt gcacgaagtt ttgcccaaac agtattatat tcactctggc aaaggattgg
      241 atgagctgaa tcaatgggta tgcgataata aatttgtcgg tttttgtact gagtcggatt
      301 atgaagcttt cgatgcgtca caggatcaat acatcatggc tttcgagatc gctctgatgg
      361 aataccttgg cctgcccaga tcattgatca atgattataa gtatatcaag actcacttgg
      421 gttgtaagat gggagctctg gccattatga gattttccgg cgaagctagt accttcttat
      481 tcaacacttt ggctaatatg ctcttcacct ttttgcgata tgatttaaat ggaaaagaga
      541 gtatttgttt tgcaggggat gacatgtgcg ccaatcggaa attgcgcgtc agcttaaggc
      601 atgaggattt cttgggaaag cttaagttga aggcgaaggt tgcttttact agaaggccca
      661 ctttttgtgg ttggaatttg actttctttg gaatatacaa aaaacctcaa ttggtcttcg
      721 aaaggatgtg catagccaag gaaaccaaca acctacagaa ttgcatcgac aactacgcca
      781 tcgagataag ttttgcttat gtgaaaggcg agatggctgt ttgccacatg gaccctgaag
      841 agctcgatgc gttctacaat tgtgtgcgtg tagtagtgaa aagcaggcat cttttaaaat
      901 caaacgttcg tgagcttttc aagaacgaag ttgaaacttg agcttaggta ttagctatac
      961 tatcgatata tatggatgtg ttttgtaaag ttttaattga gtgtggtttt catagattag
     1021 aatgtactgg aaataagtgc aaagtcgtac ttggcgtgcc cggttgcggt aaaagtagtt
     1081 gcattcgtaa attgattaat ttagattcgc gtttcattgc tgccaccttc ggtgccccag
     1141 acccgctgaa cgttacggga cggaggattc actctgttgg cgaacttgct aagattgatt
     1201 gcacggggaa atttctttta cttgacgaat ttcagcaggg tggtttcgag gaactcaaac
     1261 cgtttgccct ctttggtgac gtgtgccaat ttttcgattc tgatagaccc tgccccattg
     1321 ctgactggtg taaaacattg agccaccgcg ttaataaacc cacttgtgat ttcttaaggg
     1381 aatttggttt tgagataact tccagtaagg agggtacttt ggttttcgga gggttgtacg
     1441 aagaggagtt gctaggtgtc gtaattactt actgttctca agtgtcaaat ttgctcaaag
     1501 ctcaccaggt cgaccacttc actctcgcaa gctgccgtgg ttccgagttc ccgaaagtgt
     1561 gtctctgttt gagtgattcc attatacaga gggaagatct agcgaaattt tacgtttgtg
     1621 ccacacgaag tcgtggggat ttgcttatcc taactccgga tgcctctaag cccaccacct
     1681 gatcatacca aaacttattt tgccggagcc ataggggttt gtgtagctat ctgtttgtac
     1741 actttgactc gctcaacttt gccgcacgtc ggggataaca ttcatagttt accgcacgga
     1801 ggttgctatc aggacggcac caaaaggata atttacaata gccccgccag gaatttcccc
     1861 agtagtaact tagtgtcaaa tcttgcttcg cccttctgtg tgcttgctat catcatcggt
     1921 ctaatttgtt tgagtgagaa gtttaggcca agttcgagaa cacgcatctc atgcaattgc
     1981 aaccattcat agttctcgtc actagtctcc tagttactct gctgttttgc tatagtttcg
     2041 acaatttgag aaccgaaagg tgcaccgtca tcatcactgg tgagtccgtc aagctcattg
     2101 gctgcgaatt cacaaaagat ttcatcgatt tcgcaaaaca agcgaaaccc tttggttcac
     2161 tttaggttaa cagcgctcta attgatatta tggctaacga agaagaagaa ctcagtagaa
     2221 tgcaaaacct gcctacccgc gatcccggaa ctatccccga gcaagaacgt agcaaggcag
     2281 ttaatgatgt tggcgtgatg gatcgtgaga attttgaagc tgtgttgcgg agaagtgaag
     2341 atagattcaa taagcttaag gagaaatgcc tgtcggaact atctagcgtg agagtgacca
     2401 attgcgggtg ggagtcaggg agacccaaag cacaattagc cgatagtctt aagggggatg
     2461 catccaacat tttcacacgc ccctcaatgg atgccttgct agtgaggaac tacgcgcctg
     2521 agagcaacaa tatggctacc gccgaagagt tagcgaaaat ttctgctaaa atacaggctc
     2581 tcggcgctcc tgaagaatgc ttggccgaag ttttctggga tatctgtatg tattgtacca
     2641 ctgcaggcag ttcgccaaat gtgaatccca aaggtactat ctcagtcggg ggtaaagtcg
     2701 tgactcgaga tatggttgtc gctgtgatca aggagtattc cacattacgt caagtctgtc
     2761 gttgctacgc accagtggtc tggaattaca tgctattaaa tgaacaacca ccagctaatt
     2821 gggattccaa aggatttact gagaacacta aatacgcggc tttcgatact tttgatgctg
     2881 tcacgaacaa ggctgcaatc caaccactcg agggccttat tagagccccg actgactcgg
     2941 aacgcatcgc ttttgcgacg cacaagaaat tagctctggc gaagaattca cgttattcca
     3001 acacttctgc tgaagttacc ggtggcttct tcggatgttt tccaaaacac aatttcagag
     3061 agaatcgatg ttgatcaagc aaaggactta ccgtagacta ttgcgtgcta tatttaagtt
     3121 gcatactaat aagaactgtg tggatgtgat agacatcatc gttaataaaa tagtgtgtgg
     3181 aagaactgga gcatctaaat atgctcgagc tcgtagagct aagagtattg gtaggtgccc
     3241 ccgctgcttc aggtgtgctc ctggttttta ttttactaaa aactgtgata ctaaaacttg
     3301 taccccaggc attagctata atgaaaaagt caagaacttt atagttgatg gtgtaacaat
     3361 gtgaaaccct actacagttc ttggcttgtt gcccataaaa cctaaataat gcatcaacgt
     3421 gggaacatat aaaataattt gtttttaaaa tattttcgc
//