From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Tobacco yellow dwarf virus gene, complete cds.
Date: 7 Apr 92 10:06:51 GMT
Distribution: bionet
Checksum: 18420     7

LOCUS       TYDMONOCOT   2580 bp ss-DNA             VRL       07-APR-1992
DEFINITION  Tobacco yellow dwarf virus gene, complete cds.
ACCESSION   M81103
KEYWORDS    coat protein; polymerase.
SOURCE      Tobacco yellow dwarf virus DNA.
  ORGANISM  Tobacco yellow dwarf virus
            Viridae; ss-DNA nonenveloped viruses; Geminiviridae.
REFERENCE   1  (bases 1 to 2580)
  AUTHORS   Morris,B.A., Richardson,K.A., Haley,A., Zhan,X. and Thomas,J.E.
  TITLE     The nucleotide sequence of the infectious cloned DNA component of
            tobacco yellow dwarf virus reveals features of geminiviruses
            infecting monocotyledonous plants
  JOURNAL   Virology 187, 633-642 (1992)
  STANDARD  full staff_entry
FEATURES             Location/Qualifiers
     misc_feature    1..268
                     /note="large intergenic region"
     stem_loop       121..151
     TATA_signal     235..241
     CDS             269..577
                     /gene="V1"
                     /codon_start=1
                     /translation="MYPAKYQVVPSGINYSDTPVGTFEQYQPQKAGESSEHFFSKVVV
                     ALIVILFAVGIVYLAYTLFLKDLILLLKAKKQKTTTEIGFGNTPLRRPGEGNPNGGPV
                     "
     CDS             561..1325
                     /product="coat protein"
                     /gene="V2"
                     /codon_start=1
                     /translation="MAGRYKGLVYSRKRGRYGKTYQALGVKSQRELEQLVNQPGRPVS
                     NRRPALQVAEYLWTTNKTGMTFSPGGSTFLITNFPQGANENCRHTNRTITYKMAVKTW
                     VALDGSMFSRVSKFPIYFWLVYDKNPGESNPSPSAIFDSLYQDQPGTWTVTRNVCHRF
                     VVKKTWSCMLESNGVDPNAKQGSSYYGPGPCYQWRHVTKFFKRLGVSTEWKNSSTGDV
                     ADIKEGALYLVCAPGGGATVRVGGRFRMYFKSVGNQ"
     polyA_signal    1321..1326
     misc_feature    1323..1483
                     /note="small intergenic region"
     polyA_signal    1387..1392
     CDS             complement(1481..1921)
                     /gene="C2"
                     /codon_start=1
                     /translation="LSLDGRHIQEPRRAGTRIPSLYICGPSRTGKTTWARSLGRHNYW
                     NGTIDFTVYDDHATYNVIDDIPFKFVPLWKQLIGCQSDFTVNPKYGKKKKIKGGVPCI
                     ILCNDDEDWLKNMSPAQIEYFEANCITHFMYAAETFFAPESSSH"
                     /partial
     exon            complement(1484..1894)
                     /number=2
     CDS             complement(1693..2580)
                     /gene="C1"
                     /codon_start=1
                     /translation="MPSAPQKTKSFRLQTKYVFLTYPRCSSSAENLRDFLWDKLSRFA
                     IFFIAIATELHQDGTPHLHCLIQLDKRSNIRDPSFFDLEGNHPNIQPAKNSEQVLEYI
                     SKDGNVITKGEFKKHRVSPSKSDERWRTIIQTATSKEEYLDMIKDEFPHEWATKLQWL
                     EYSANKLFPPQPEIYQATFTEEDLQCHEDLQLWRDQHLYHVSVDAYRLVHNVTLVEAH
                     SDLVWMDDISRNLEGLEPGSPPSTSADQVVPERQHGPEASEGTITGMGPSTSLSMMTT
                     RPTTSSTTSPSNSSHSGSN"
     intron          complement(1895..1980)
                     /number=1
     exon            complement(1981..2580)
                     /number=1
BASE COUNT      685 a    497 c    623 g    775 t
ORIGIN
        1 attaaggctc aagtaccgta cgatgaaact ctattcttaa ctagtgagtg agccagtgag
       61 ccaggtttat gtggcattta tattggtagg tggaccgtta ggatcttgac gcgtggggca
      121 cactcacgga ttttaatatt acccgtgagt gctctcttgg ccccacgcga gccctttagg
      181 gcgagcgaaa gtgcgccgta gtttccttta gtggttcatg agtcattata gtgctatata
      241 aagatgatgt gacatcccaa agttgaaaat gtatcccgcc aaataccaag tggtcccatc
      301 tggtataaat tactcagata cccctgttgg tacttttgag caatatcagc cgcagaaagc
      361 gggtgagtca tcggagcact tcttttcgaa agttgttgtt gctttgattg ttatcctttt
      421 tgctgtaggt atcgtatact tagcgtatac gttattcttg aaggatttga tccttctttt
      481 gaaagcaaag aagcagaaga cgacaactga gatagggttt ggtaataccc ctctcagaag
      541 acctggtgaa ggaaacccta atggcgggcc ggtataaggg tttggtttat tcccggaaaa
      601 ggggacgtta tggcaagacc tatcaggctc ttggcgtgaa atcacaaaga gaattggagc
      661 agctagttaa ccaaccaggc cgtcctgttt ctaacaggcg tcctgctcta caggtcgcag
      721 agtatctgtg gacgacgaat aaaacaggaa tgacgttttc tcctggtggg tctactttcc
      781 tcatcactaa tttccctcaa ggggcgaacg agaactgtag gcacaccaac cggacaatta
      841 cctacaagat ggctgtgaag acgtgggttg ctttggatgg ctcgatgttc tctagggttt
      901 caaaattccc aatctatttc tggttggtgt atgataaaaa ccctggcgag agtaatccat
      961 cgccttccgc tatttttgat agtctatatc aagatcagcc tgggacttgg actgtgactc
     1021 gtaatgtatg tcacaggttt gtcgttaaaa aaacctggtc atgtatgttg gagtctaatg
     1081 gagttgaccc taatgctaaa caagggtctt cttactatgg tcctgggcct tgttatcagt
     1141 ggaggcatgt tactaagttt tttaaacgtt taggggttag cacagagtgg aagaattctt
     1201 ccactggtga tgttgctgat attaaggaag gagcactata ccttgtatgt gctcctggtg
     1261 gtggtgctac tgtaagagtt ggcggtagat tccgcatgta tttcaaatca gttggcaatc
     1321 aataaaaatg tcgttatttt gatttcatat taatgagctt cagtgtagag aaattcaaat
     1381 cttattaata aaaacccgga atacaaaaac acacgaaaac gaaaaaaaga caccttacaa
     1441 tcattacaca ctatataccc tcctatgagg agaggcacgt tcagtgactc gacgattcag
     1501 gagcaaaaaa tgtttccgcc gcatacataa aatgcgtaat acaattggct tcaaagtatt
     1561 caatctgagc gggagacata ttcttcagcc agtcttcatc gtcgttacat agtataatac
     1621 atggcactcc tccctttatt ttcttctttt ttccatactt agggttgaca gtaaaatcag
     1681 actggcaacc tattaattgc ttccagagtg ggacgaattt gaaggggatg tcgtcgatga
     1741 cgttgtaggt cgcgtggtca tcatagacag tgaagtcgat ggtcccattc cagtaattgt
     1801 gccttccgag gcttctggcc catgttgtct ttccggtacg acttggtccg cagatgtaga
     1861 gggaggggat cctggttcca gcccttctag gttcctggat atgtcgtcca tccaaactaa
     1921 gtcagagtgt gcttcaacaa gtgtgacgtt atgaactaga cggtaagcat ctacacttac
     1981 gtggtataga tgctggtctc tccataactg cagatcttca tgacattgga gatcttcctc
     2041 agtgaatgtg gcctggtaga tttcaggttg tggtggaaat agtttatttg cagagtattc
     2101 caaccactgt aattttgttg cccattcatg aggaaattca tcctttatca tgtccagata
     2161 ttcctcttta gaagtcgcag tctggataat agttcgccat cgctcatcag atttggaagg
     2221 ggagactctg tgtttcttga actctccttt ggtgatgacg tttccgtctt tggagatgta
     2281 ttcaagaact tgttcagagt ttttagctgg ttggatattt ggatggtttc cttcaagatc
     2341 aaaaaaagaa gggtcacgta tattgcttct tttgtcaagc tgtataaggc agtgaagatg
     2401 gggagtacca tcctggtgga gttcagtagc aatagcgata aagaaaatag caaaacgtga
     2461 aagtttatcc cagaggaaat ctctgagatt ttctgcacta gagctgcagc gtggataagt
     2521 aaggaagaca tatttggttt ggagtctgaa ggatttggtt ttctgggggg ctgaaggcat
//