From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: TYA4=gag homolog, TYB4=retroviral polyprotein homolog
Date: 29 Dec 92 20:58:36 GMT
Distribution: bionet
Checksum: 22035 14

LOCUS       S115607      7654 bp    DNA             NLM       11-DEC-1992
DEFINITION  TYA4=gag homolog, TYB4=retroviral polyprotein homolog
            {retrotransposon Ty4} [Saccharomyces cerevisiae, Genomic, 7654 nt]
ACCESSION   S46865 X67284
KEYWORDS    .
SOURCE      Saccharomyces cerevisiae
  ORGANISM  Saccharomyces cerevisiae
            Unclassified.
REFERENCE   1  (bases 1 to 7654)
  AUTHORS   Janetzky,B. and Lehle,L.
  TITLE     Ty4, a new retrotransposon from Saccharomyces cerevisiae, flanked
            by tau-elements.
  JOURNAL   J. Biol. Chem. 267, 19798-19805 (1992)
  STANDARD  full automatic
COMMENT     This entry [NCBI gibbsq 115607] was created by the journal scanning
            component of NCBI/GenBank at the National Library of Medicine.
            This sequence comes from Fig. 2.
FEATURES             Location/Qualifiers
     CDS             632..1876
                     /note="Description: gag homolog;  For the protein sequence
                     (NCBI gibbsq 115608):  Method: conceptual translation
                     supplied by author.  This sequence comes from Fig. 2."
                     /gene="TYA4"
                     /codon_start=1
                     /translation="MATPVRGETRNVIDDNISARIQSKVKTNDTVRQTPSSLRKVSIK
                     DEQVRQYQRNLNRFKTILNGLKAEEEKLSEADDIQMLAEKLLKLGETIDKVENRIVDL
                     VEKIQLLETNENNNILHEHIDATGTYYLFDTLTSTNKRFYPKDCVFDYRTNNVENIPI
                     LLNNFKKFIKKYQFDDVFENDIIEIDPRENEILCKIIKEGLGESLDIMNTNTTDIFRI
                     IDGLKKQNIEVCMVEMSELEPGEKVLVDTTCRNSALLMNKLQKLVLMEKWIFSKCCQD
                     CPNLKDYLQEAIMGTLHESLRNSVKQRLYNIPHDVGIDHEEFLINTVIETVIDLSPIA
                     DDQIENSCMYCKSVFHCSINCKKKPNRELRPDSTNFSKTYYLQGAQRQQPLKSSAKRT
                     KVLEQDTKKVEQSVQQQKTGNY"
     CDS             1647..6044
                     /note="Author states that position of start codon is
                     tentative.  Description: retroviral polyprotein homolog;
                     For the protein sequence (NCBI gibbsq 115609):  Method:
                     conceptual translation supplied by author.  This sequence
                     comes from Fig. 2."
                     /gene="TYB4"
                     /codon_start=1
                     /translation="KIAACIANLFSIAQLTAKRNQIGNLGLTRPISQKPIIYKVHRDN
                     NHLSPVQNEQKSWNKTQKRSNKVYNSKKLVIIDTGSGVNITNDKTLLHNYEDSNRSTR
                     FFGIGKNSSVSLKGYGYIKIKNGHNNTDNKCLLTYYVPEEESTIISCYDLAKKTKMVL
                     SRKYTRLGNKIIKIKTKIVNGVIHVKMNELIERPSDDSKINAIKPTSSPGFKLNKRSI
                     TLEDAHKRMGHTGIQQIENSIKHNHYEESLDLIKEPNEFWCQTCKISKATKRNHYTGS
                     MNNHSTDHEPGSSWCMDIFGPVSSSNADTKRYMLIMVDNNTRYCMTSTHFNKNAETIL
                     AQVRKNIQYVEAQFDRKVREINSDRGTEFTNDQIEEYFISKGIHHILTSTQDHAANGR
                     AERYIRTIITDATTLLRQSNLRVKFWEYAVTSATNIRNYLEHKSTGKLPLKAISRQPV
                     TVRLMSFLPFGEKGIIWNHNHKKLKPSGLPSIILCKDPNSYGYKFFIPSKNKIVTSDN
                     YTIPNYTMDGRVRNTQNINKSHQFSSDNDDEEDQIETVTNLCEALENYEDDNKPITRL
                     EDLFTEEELSQIDSNSKYPSPSNNLEGDLDYVFSDVEESGDYDVESELSTTNNSISTD
                     KNKILSNKDFNSELASTEISISGIDKKGLINTSHIDEDKYDEKVHRIPSIIQEKLVGR
                     KNTIKINDENKISDRIRSKNIGSILNTGLSRCVDITDESITNKDESMHNAKPELIQEQ
                     LKKTNHETSFPKEGSIGTNVKFRNTNNEISLKTGDTSLPIKTLESINNHHSNDYSTNK
                     VEKFEKENHHPPPIEDIVDMSDQTDMESNCQDGNNLKELKVTDKNVPTDNGTNVSPRL
                     EQNIEASGSPVQTVNKSAFLNKEFSSLNMKRKRKRHDKNNSLTSYELERDKKRSKKNR
                     VKLIPDNMETVSAPKIRAIYYNEAISKNPDLKEKHEYKQAYHKELQNLKDMKVFDVDV
                     KYSRSEIPDNLIVPTNTIFTKKRNGIYKARIVCRGDTQSPDTYSVITTESLNHNHIKI
                     FLMIANNRNMFMKTLDINHAFLYAKLEEEIYIPHPHDRRCVVKLNKALYGLKQSPKEW
                     NDHLRQYLNGIGLKDNSYTPGLYQTEDKNLMIAVYVDDCVIAASNEQRLDEFINKLKS
                     NFELKITGTLIDDVLDTDILGMDLVYNKRLGTIDLTLKSFINRMDKKYNEELKKIRKS
                     SIPHMSTYKIDPKKDVLQMSEEEFRQGVLKLQQLLGELNYVRHKCRYDIEFAVKKVAR
                     LVNYPHERVFYMIYKIIQYLVRYKDIGIHYDRDCNKDKKVIAITDASVGSEYDAQSRI
                     GVILWYGMNIFNVYSNKSTNRCVSSTEAELHAIYEGYADSETLKVTLKELGEGDNNDI
                     VMITDSKPAIQGLNRSYQQPKEKFTWIKTEIIKEKIKEKSIKLLKITGKGNIADLLTK
                     PVSASDFKRFIQVLKNKITSQDILASTDY"
BASE COUNT     2992 a   1212 c   1317 g   2133 t
ORIGIN      
        1 attattgtcg ttgagaacaa aaagaaattg gacgagtccg gaatcgaacc ggagacctct
       61 cccatgcata agggagcgcg ctaccgacta cgccacacgc cctaatatta ttgatattgt
      121 tgtttatcaa agtgagatac gtcagtatga caatacgtca tcctaaaagt tcataaaaca
      181 catatgaaac aacttcataa cagaacgaac atgttggaat aaaaatccac tatcgtctat
      241 caactaatag ttatattatc atgttggaac gagagtaatt aatagtgaca tgagttgcta
      301 tggtaacaat ctaatgctta catcgtatat taatgtacaa ctcgtatacg tttaagtgtg
      361 attgcgccta ttgcagaagg aatgttaaac gagaagctca gacaatactg aagctgtgtt
      421 aaagacctat tagttgaaca tgttatggta ggtacatata tgaggaatat gagtcgtcac
      481 atcaatgtat agtaactacc ggaatcacta ttatattggt cataattaat atgaccaatc
      541 ggcgtgtgtt ttatatacct ctcttattta gtataagaag atcagtactc acttcttcat
      601 taatactaat ttttaacctc taattatcaa catggcgacc ccagtgaggg gtgaaacaag
      661 aaatgttatt gacgacaaca tttctgcgcg gattcaatcg aaagtcaaaa caaatgatac
      721 tgtcagacag acgccatcat cattaagaaa agtttctatt aaagatgaac aggtgagaca
      781 atatcaaaga aacttaaata ggtttaaaac catactaaat ggtttaaagg cagaagagga
      841 aaaactttct gaggctgatg atattcagat gctagctgaa aaattattaa aactcggaga
      901 aaccattgac aaggttgaga ataggattgt ggatctagtt gaaaagatac aattattgga
      961 aacaaacgag aacaataata tattacatga acatatagat gctacaggga cttactattt
     1021 attcgatacg ttaacttcaa ccaacaaaag attctaccct aaggattgtg tttttgatta
     1081 taggactaat aatgtcgaga acattcctat tctcttaaac aattttaaaa aattcatcaa
     1141 gaaatatcaa tttgatgatg tctttgaaaa tgatatcata gaaatcgatc ctcgtgaaaa
     1201 tgaaatcttg tgcaagataa tcaaagaagg actcggtgaa agtttagata tcatgaacac
     1261 aaatacaact gacattttta ggataatcga tggtttaaaa aaacaaaata tagaagtttg
     1321 catggtagag atgtcagaat tagagcctgg ggaaaaggtt ttggttgata caacatgtag
     1381 aaattccgca ttgttaatga ataaacttca aaagttggta ctaatggaaa aatggatttt
     1441 ttctaaatgc tgccaagatt gtcctaatct aaaggattac ctacaagaag ctatcatggg
     1501 aaccttacat gaatccttaa gaaattctgt gaaacaacgt ttgtacaaca ttccacatga
     1561 cgtaggaatt gatcacgaag aatttctaat caatactgtt attgaaacag taattgattt
     1621 gagcccaatt gcagacgatc aaatagaaaa tagctgcatg tattgcaaat ctgttttcca
     1681 ttgctcaatt aactgcaaaa agaaaccaaa tagggaactt aggcctgact cgaccaattt
     1741 ctcaaaaacc tattatctac aaggtgcaca gagacaacaa ccacttaagt ccagtgcaaa
     1801 acgaacaaaa gtcttggaac aagacacaaa aaaggtcgaa caaagtgtac aacagcaaaa
     1861 aactggtaat tattgatacc ggttccggag taaacattac caatgacaaa accttactgc
     1921 ataattacga agacagtaat cgcagtacac gattttttgg tattgggaaa aacagttcag
     1981 tgtctcttaa agggtatggc tatataaaaa tcaagaatgg tcacaacaat actgacaata
     2041 agtgtctatt aacttactat gtaccggaag aagaatccac tataatcagc tgttatgact
     2101 tagccaagaa aaccaaaatg gttttaagtc gaaaatatac cagattggga aacaaaatca
     2161 taaaaattaa aaccaagata gttaatggtg tcattcacgt aaaaatgaac gagttaattg
     2221 aacgtccttc cgatgattca aaaataaatg caataaaacc tacttcttct cctggattta
     2281 aactaaataa aaggtctatt accttggaag atgctcataa aagaatgggc catacaggaa
     2341 ttcaacaaat tgaaaattcc ataaaacata atcattatga agaatccctt gacttaatca
     2401 aagaaccaaa tgaattttgg tgtcaaacct gtaaaatctc taaagccacg aaaagaaatc
     2461 attataccgg gtctatgaat aatcatagta ctgatcatga accaggctca tcatggtgca
     2521 tggatatatt tggccctgta tcaagttcaa acgcggacac taaaaggtac atgcttatta
     2581 tggtggataa caacacgaga tattgcatga cctccacaca cttcaataag aatgctgaaa
     2641 ctattttagc tcaagttaga aagaatattc agtacgtgga agcacaattt gacaggaaag
     2701 tcagagaaat taattcagac agaggtactg aattcacaaa tgatcagata gaagaatatt
     2761 ttatttcaaa aggaatacat cacatactta cttctacaca agatcatgct gctaacggaa
     2821 gagcagaaag atacataaga acaataataa ctgatgcaac aacactccta agacaaagta
     2881 acttaagagt aaaattttgg gaatacgcag taacttctgc taccaatata agaaattacc
     2941 tggaacacaa aagtacaggt aaactaccat tgaaggcaat ctcacgtcaa cctgtgacag
     3001 tgagattaat gtcattctta ccatttggcg aaaaaggaat aatttggaat cataatcaca
     3061 aaaaattgaa accatctgga cttccttcta taattctatg caaagatcca aatagttatg
     3121 gatacaaatt ctttatacca tccaaaaata aaattgtcac atctgataat tatacaattc
     3181 ccaactatac aatggacggt agagtaagaa atactcagaa tattaacaag agtcatcaat
     3241 tcagttcaga taatgatgat gaagaagatc aaatcgaaac ggtcacaaac ttatgtgaag
     3301 ctttggaaaa ctacgaagat gataataaac caattactcg cctggaagat ttgttcacag
     3361 aggaagagtt atctcaaata gactcaaact caaaataccc atctcctagt aataacctag
     3421 aaggggactt ggattacgta ttttctgatg ttgaggaatc tggagattat gacgttgaat
     3481 ctgaactttc aacgacaaat aattcaatct caactgataa aaacaaaatt ttgtcaaaca
     3541 aggattttaa ttcagaactt gcatcgactg aaatatccat cagtggaatc gataagaaag
     3601 gattaataaa tacaagtcat attgatgaag ataagtatga tgaaaaagtc cacagaattc
     3661 catcgattat acaagagaaa ctggtaggaa ggaaaaatac tattaaaatc aatgacgaaa
     3721 acaaaatctc cgacagaatt cgtagtaaaa acattgggag tattttaaac actggactca
     3781 gtagatgtgt agatatcacc gatgaatcta ttactaacaa agatgagtca atgcacaacg
     3841 caaaacccga actaattcag gagcagttaa aaaaaacaaa tcatgaaact tcgtttccta
     3901 aagaagggag cattggaaca aatgtaaaat tccgaaatac aaacaatgag atttctttaa
     3961 aaacaggcga tacgagttta ccaataaaaa ctttagaaag cattaacaat caccatagta
     4021 atgattattc cacaaacaaa gttgaaaagt ttgagaagga aaatcatcat ccgcccccga
     4081 ttgaggacat tgtggatatg agtgatcaaa ctgatatgga atcaaactgt caggatggta
     4141 ataacttaaa agaattaaaa gtcaccgata aaaatgtacc aactgacaat ggaacaaatg
     4201 tgtcaccaag gttggaacaa aatattgaag catctggatc accagtacaa acagttaata
     4261 aaagtgcctt cttaaacaaa gaattcagtt ctttgaacat gaaaagaaaa cggaaaagac
     4321 acgataaaaa caatagtcta acaagctatg aattagaaag agataagaag cgttcaaaaa
     4381 agaatcgagt gaaattaatt ccagataata tggaaacagt ttcagcacca aaaattcgag
     4441 ccatatatta taatgaagct atttcaaaaa atcctgacct caaagaaaaa catgaataca
     4501 aacaggcata tcataaagaa ttacagaatt taaaagatat gaaggtattt gatgtcgatg
     4561 tgaagtacag tagatcagaa atccctgata atttaatagt acccaccaac acgatattca
     4621 caaagaaaag aaatgggatt tataaggcta ggatagtctg cagaggtgat actcagtcac
     4681 cagacactta cagtgtaata actacagaat ctttaaatca caatcatatt aagatattct
     4741 taatgattgc aaacaacaga aatatgttta tgaagaccct ggatatcaat catgcattcc
     4801 tatatgctaa attggaagaa gaaatataca tcccacatcc gcatgatagg agatgtgtag
     4861 tcaagctaaa taaggcgtta tatggtctaa aacagagtcc taaagaatgg aatgatcatc
     4921 taagacaata cttgaatgga attggactga aagataactc ttatactccg ggattatacc
     4981 aaaccgagga taaaaatcta atgattgcag tctatgttga tgactgcgta attgcggcaa
     5041 gcaatgaaca gagattggat gaattcataa acaaattgaa aagtaatttt gaactgaaaa
     5101 ttacaggaac attaatagac gatgtactcg atacagatat attaggaatg gatctagtat
     5161 acaacaaaag acttggtact atcgatttaa cattaaaatc attcataaat agaatggata
     5221 aaaaatacaa cgaggaattg aaaaagatta gaaaaagttc aattccgcat atgtcaactt
     5281 ataaaataga tcctaagaaa gacgtactgc aaatgtcaga agaagagttt agacaaggtg
     5341 ttctaaagct acaacaatta ctaggtgaac taaactatgt cagacacaaa tgcagatacg
     5401 acattgaatt tgctgttaag aaagtggcta gactagtaaa ttacccacat gaaagagtct
     5461 tttatatgat ttacaaaata atccagtact tggttaggta taaagatatt ggaatacact
     5521 atgaccgaga ctgtaataaa gacaaaaagg ttattgctat aactgatgca tcagttggat
     5581 cagaatatga tgctcaatca aggattggag ttatattatg gtacggtatg aatattttta
     5641 atgtttattc taacaagagc acaaacagat gtgtatcatc aacagaagca gagcttcatg
     5701 ccatttatga aggctatgca gactcagaaa cgttgaaggt aacattaaag gagctaggag
     5761 aaggagacaa taatgacatt gtcatgatca ctgactcaaa gccagccatt caaggattaa
     5821 atcgcagcta tcaacaacca aaagagaaat tcacttggat aaaaactgaa ataataaaag
     5881 aaaaaattaa agagaagagt ataaaactgt taaaaattac cggcaaaggt aatattgctg
     5941 atttactaac aaaaccagta tcagcatctg attttaaaag atttatacaa gtattaaaaa
     6001 ataaaataac atcacaggat attttggcct caacagacta ttgataatta attaatgaag
     6061 ttctaaacac acaatgaata tctgttgaag tacaataata tatctttaag ggagcatgtt
     6121 ggaacgagag taattaatag tgacatgagt tgctatggta acaatctaat gcttacatcg
     6181 tatattaatg tacaactcgt atacgtttaa gtgtgattgc gcctattgca gaaggaatgt
     6241 taaacgagaa gctcagacaa tactgaagct gtgttaaaga cctattagtt gaacatgtta
     6301 tggtaggtac atatatgagg aatatgagtc gtcacatcaa tgtatagtaa ctaccggaat
     6361 cactattata ttggtcataa ttaatatgac caatcggcgt gtgttttata tacctctctt
     6421 atttagtata agaagatcag tactcacttc ttcattaata ctaattttta acctctaatt
     6481 atcaacatat caatatatta ttgaagattg ggtgaatttt gagataattg ttgggattcc
     6541 atttttaata aggcaataat attaggtatg tagatatact agaagttctc ctccaggatt
     6601 taggaatcca taaaaggaaa tctgcaattc tacacaattc tataaatatt attatcatca
     6661 ttttatatgt taatattcat tgatcctatt acattatcaa tccttgcgtt tcagcttcca
     6721 ctaatttaga tgactatttc tcatcatttg cgtcatcttc taacaccgta tatgataata
     6781 tactagtaac gtaaatacta gttagtagat gatagttgat ttttattcca acaattatca
     6841 tatacggtgt taagatgatg acataagtta tgagaagctg tcatcgaagg ttagaggaag
     6901 ctgaagtgca ggattgataa tgtaatagga taatgaacat ataaacggaa tgaggataat
     6961 cgtaatatta gtatgtagaa atatagattc cattttgagg attcctatat cctcgaggag
     7021 aacttctagt atattctgta tacctaatat tataccctct atcaacaaca ggattccaac
     7081 aattatttca aaatccaccc atatctcaga tttcacatca gtattgatta aaatattaat
     7141 tgctaccagt tctaataaat ctaatgttta catcatatag taatatatct tttgagaaat
     7201 gtgactggcg ttatacagaa accgaattac acgtttaaat actaattata aattatcctg
     7261 ataagtgtat ctttatttcc gtacagcaca accgatagag gagatgttta aagtgtttaa
     7321 gctcacttta tagggtgaaa cacattttga cgaccgtaaa aggtcatttg atttggtatt
     7381 gaggtcgaga aaatattttc aaatagtgaa ggatacatta aacacgctca caaaacaaca
     7441 taaaaatccg tgatagttta atggtcagaa tggggcttgt cgcgtgccag atcggggttc
     7501 aattccccgt cgcggagatt ttttttggcc cttgatgact gttctggtac aatttccacc
     7561 ttgaatgagg gtataagata ccgatgatat atattcagac tatttctacg acacagaaaa
     7621 acaatcgacc aagccgtcct tgaacatgct gcag
//