From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Feline calicivirus, complete genome.
Date: 29 Dec 92 19:57:17 GMT
Distribution: bionet
Checksum: 08264 15

LOCUS       FCLCOMGEN    7690 bp ss-RNA             VRL       10-DEC-1992
DEFINITION  Feline calicivirus, complete genome.
ACCESSION   M86379
KEYWORDS    capsid precursor protein; complete genome; nonstructural protein.
SOURCE      Feline calicivirus cDNA to genomic RNA.
  ORGANISM  Feline calicivirus
            Viridae; ss-RNA nonenveloped viruses; Caliciviridae.
REFERENCE   1  (sites)
  AUTHORS   Carter,M.J., Milton,I.D., Turner,P.C., Meanger,J., Bennett,M.F. and
            Gaskell,R.M.
  TITLE     Identification and sequence determination of the capsid protein
            gene of feline calicivirus
  JOURNAL   Arch. Virol. (1992) In press
  STANDARD  full automatic
REFERENCE   2  (bases 1 to 7690)
  AUTHORS   Carter,M.J., Milton,I.D., Meanger,J., Turner,P.C., Bennett,M.F. and
            Gaskell,R.M.
  TITLE     The complete genome sequence of a feline calicivirus
  JOURNAL   Virology 190, 443-448 (1992)
  STANDARD  full automatic
COMMENT     Reference Arch. Virol. (1992) refers to basepair 3310 to basepair
            7690 of the genome. See Ac. # Z11536 for more features.
FEATURES             Location/Qualifiers
     CDS             20..5311
                     /function="2C like protein, protease, and RNA polymerase"
                     /standard_name="ORF 1"
                     /citation=[1]
                     /citation=[2]
                     /note="putative"
                     /product="non-structural protein"
                     /codon_start=1
                     /translation="MSQTLSFVLKTHSVRKDFVHSVKLTLARRRDLQYIYNKLSRTIR
                     AEACPSCASYDVCPNCTSGDVPDDGSSTMSIPSWEDVTKSSTYSLLLSEDTSDELCPE
                     DLVNVAAHIRKALSTQSHPANAEMCKEQLTFLLVMAEAMLPQRSRASIPLHQQHTAAR
                     LEWREKFFSKPLDFLLERVGVSKDILQTTAIWKIILEKACYCKSYGEQWFTAAKQKLR
                     EMKNFESDTLKPLIGGFIDGLRFLTVDNPNPMGFLPKLIGLVKPLNLAMIIDNHENTI
                     SGWIITLTAIMELYNITECTIDIITSVITAFYDKIGKATKFYSCVKALFTGFRSEDVA
                     NSFWYMAAAILCYLITGLIPNNGRFSKIKACLAGATTLVSGIVATQKLAAMFATWNSE
                     SIVNELSARTVALSELNNPTTTSDTDSVERLLELAKILHEEIKIHTLNPIMQSYNPIL
                     RNLMSTLDGVITSCNKRKAIARKRQVPVCYILTGPPGCGKTTAAQALAKKLSDQEPSV
                     INLDVDHHDTYTGNEVCIIDEFDSSDKVDYANFVIGMVNSAPMVLNCDMLENKGKLFT
                     SKYIIMTSNSETPVKPSSKRAGAFYRRVTIIDVTNPFVESHKRARPGTSVPRSCYKKN
                     FSHLSLAKRGAECWCKEYVLDPKGLQHQSMKAPPPTFLNIDSLAQTMKQDFLLKNMAF
                     EAEDGCAEHRYGFVCQQEEVETVRRLLNAVRARMNATFTVCVGPETSHSIGCTAHVLT
                     PNETFNGKKFVVSRCNEASLSALEGNCVKSALGVCMSDKDLTHLCHFIKGKIVNDSVR
                     LDELPANQHVVTVNSVFDLAWAVRRHLTLAGQFQAIRAAYDVLTVPDKIPAMLRHWMD
                     ETSFSDDHVVTQFVTPGGIVILESCGGARIWALGRNVIRAGGVTATPTGGCVRLMGLS
                     APTMPWSEIFRELFSLLGRIWSSVKVSALVLTALGMYASRFRPKSEAKGKTKLKIGTY
                     RGRGVALTDDEYDEWREHNASRKLDLSVEDFLMLRHRAALGADDNDAVKFRSWWNSRT
                     KMANDYEDVTVIGKGGVKHEKIRTNTLKAVDRGYDVSFAEESGPGTKFHKNAIGSVTD
                     VCGEHKGYCIHMGHGVYASVAHVVKGDSFFLGERIFDLKTNGEFCCFRSTKILPSAAP
                     FFSGKPTRDPWGSPVATEWKPKMYTTTSGKILGCFATTSTETHPGDCGLPYIDDNGRV
                     TGLHTGSGGPKTPSAKLVVPYVHIDMKTKSVTAQKYDVTKPDISYKGLICKQLDEIRI
                     IPKGTRLHVSPAHTEDYQECSHQPASLGSGDPRCPKSLTAIVVDSLKPYCENVEGPPH
                     DVLHRVQKMLIDHLSGFVPMNISSETSMLSAFHKLNHDTSCGPYLGGRKKDHMANGEP
                     DKQLLDLLSAKWKLATQGIALPHEYTIGLKDELRPVEKVSEGKRRMIWGCDVGVATVC
                     AAAFKGVSDAITANHQYGPIQVGINMDSPSVEALFQRIKSAAKVFAVDYSKWDSTQSP
                     RVSAASIDILRYFSDRSPIVDSASNTLKSPPVAIFNGVAVKVSSGLPSGMPLTSVINS
                     LNHCLYVGCAILQSLEAKAIPVTWNLFSTFDIMTYGDDGVYMFPIMYASISDQIFGNL
                     SSYGLKPTRVDKSVGAIEPIDPDSVVFLKRTITRTPQGIRGLLDRSSIIRQFYYIKGE
                     NSDDWKSPPKHIDPTSRGQQLWNACLYASQHGLEFFNKVYRLAERAVEYEELHFEPPT
                     YASALDHYNSQFNGVEARSDQIDSSGMTALHCDVFEV"
     CDS             5314..7329
                     /function="structural protein"
                     /standard_name="(ORF2) cpP76"
                     /evidence="EXPERIMENTAL"
                     /citation=[1]
                     /product="capsid precursor protein"
                     /codon_start=1
                     /translation="MCSTCANVLKYYDWDPHFKLVINPNNFLSVGFCSNPLMCCYPEL
                     LPEFGTVWDCDRSPLEIYLESILGDDEWASTFDAVDPVVPPMHWGAAGKIFQPHPGVL
                     MHHLIGKVAAGWDPDLPLIRLEADDGSITAPEQGTMVGGVIAEPSAQMSTAADMATGK
                     SVDSEWEAFFSFHTSVNWSTSETQGKILFKQSLGPLLNPYLEHLAKLYVAWSGSIEVR
                     FSISGSGVFGGKLAAIVVPPGVDPVQSTSMLQYPHVLFDARQVEPVIFCLPDLRSTLY
                     HLMSDTDTTSLVIMVYNDLINPYANDANSSGCIVTVETKPGPDFKFHLLKPPGSMLTH
                     GSIPSDLIPKTSSLWIGNRYWSDITDFVIRPFVFQANRHFDFNQETAGWSTPRFRPIS
                     VTITEQNGAKLGIGVATDYIVPGIPDGWPDTTIPGELIPAGDYAITNGTGNDITTATG
                     YDTADIIKNNTNFRGMYICGSLQRAWGDKKISNTAFITTATLDGDNNNKINPCNTIDQ
                     SKIVVFQDNHVGKKAQTSDDTLALLGYTGIGEQAIGSDRDRVVRISTLPETGARGGNH
                     PIFYKNSIKLGYVIRSIDVFNSQILHTSRQLSLNHYLLPPDSFAVYRIIDSNGSWFDI
                     GIDSDGFSFVGVSGFGKLEFPLSASYMGIQLAKIRLASNIRSPMTKL"
BASE COUNT     2057 a   1798 c   1750 g   2085 t
ORIGIN      
        1 gtaaaagaaa tttgagacaa tgtctcaaac tctgagcttc gtgcttaaaa ctcacagtgt
       61 ccgaaaggac tttgtgcact ctgtcaagtt aacacttgca cggaggcgcg atcttcagta
      121 tatttataac aagctctcac gcactatacg tgctgaggct tgcccttctt gtgctagtta
      181 cgacgtatgt cctaactgca cctctggtga cgtcccggat gacgggtctt cgacaatgtc
      241 gattccatca tgggaggatg tcacaaagtc ttcaacctac tctctcctgc tctctgagga
      301 cacctccgac gagttatgcc ctgaggactt ggttaatgtg gctgctcata tccgtaaggc
      361 gctatccact cagtcccacc cggctaatgc tgaaatgtgc aaagaacagc tcactttctt
      421 attagtcatg gctgaggcga tgctgcccca acgatcccga gcgtcaatcc cactgcacca
      481 acaacacacg gctgcacggt tggaatggag ggagaaattc ttctctaaac ctcttgactt
      541 tctccttgaa agagttggtg tgtcaaaaga tattctccaa actactgcga tttggaaaat
      601 tatcttggaa aaagcatgct attgtaaatc ctatggagag cagtggttca ctgctgccaa
      661 acaaaagtta agggaaatga aaaactttga gagtgatacg ctaaaacctc ttattggtgg
      721 atttatagat ggtctacggt tcttgaccgt ggacaaccca aacccgatgg gtttcctccc
      781 aaaactcata gggcttgtaa aacccctgaa tttggcgatg attattgata atcatgaaaa
      841 cacaatatct ggctggatca tcacattaac cgcaataatg gagctataca acatcaccga
      901 atgcaccata gatattataa catcagtcat tacggctttc tatgataaaa ttggcaaggc
      961 aaccaaattt tacagttgtg ttaaggcgct gttcactgga tttagatctg aggacgtagc
     1021 gaattccttt tggtacatgg cagcagcgat tctatgttac ctgatcactg ggttaatccc
     1081 aaacaacggc agattttcaa agataaaagc ttgcctggcc ggagcgacaa ctcttgtatc
     1141 aggtatagtt gccacacaaa agctagctgc aatgttcgca acatggaact ctgagtccat
     1201 tgttaatgag ttgtcagcaa gaactgttgc cctatcagag ctaaacaatc caacaacaac
     1261 gtctgacacg gattcggtag aacgactgct agaattggct aagatcttgc atgaggagat
     1321 caagattcat actctaaacc ccatcatgca atcatacaat ccaatcttga gaaatttaat
     1381 gtcaaccttg gacggtgtta taacatcatg caacaagagg aaagctattg ctcggaagag
     1441 acaggtgcca gtttgttaca tattaactgg cccacctgga tgtgggaaaa caaccgcagc
     1501 tcaagcatta gctaagaaat tgtctgatca agagccgtcg gtaattaacc ttgatgttga
     1561 tcatcatgac acatatactg gaaatgaggt atgtatcatt gatgagtttg attcgtctga
     1621 caaggtagac tatgcaaatt ttgtgattgg gatggtaaac tctgctccta tggtgttaaa
     1681 ttgtgacatg cttgagaaca agggaaagct cttcacctca aagtatataa ttatgacttc
     1741 caactctgaa actccagtga aaccctcttc caagcgcgca ggtgcattct accgaagggt
     1801 tactatcatc gatgtaacta acccttttgt ggagtcgcac aagcgtgcaa ggcctgggac
     1861 gtctgttcct cgtagctgct ataagaaaaa cttctcccat ctctcacttg ctaaacgagg
     1921 ggccgagtgc tggtgcaagg aatacgttct tgaccctaag gggcttcaac accaaagcat
     1981 gaaggctccc cctcctacct ttcttaacat tgactcttta gctcagacga tgaagcaaga
     2041 cttcttgctc aagaacatgg cttttgaggc tgaagatggg tgcgcagaac atcgatatgg
     2101 gtttgtgtgt caacaggaag aggttgaaac tgttcgcagg ctcctcaacg cggttagggc
     2161 aaggatgaat gctaccttca ctgtgtgtgt tggacccgag acctcgcact cgattggttg
     2221 cactgcgcac gtgttaactc ccaatgagac ctttaatgga aagaagtttg ttgtgtcacg
     2281 atgtaacgaa gcatcacttt ctgcccttga aggtaactgt gtaaagtcag ctttgggcgt
     2341 gtgtatgtca gataaggatc tcactcattt atgccacttc attaaaggga aaattgtcaa
     2401 tgacagtgtt aggttggatg aactacccgc caatcagcat gtggtaaccg ttaattcggt
     2461 gtttgatttg gcctgggctg ttcgtcgtca tctcacactg gcagggcagt ttcaagctat
     2521 cagagccgca tatgatgtgc ttactgtccc cgacaagatc cctgcaatgt tgcgtcactg
     2581 gatggatgag acctcctttt ctgatgacca cgttgtaaca caatttgtaa cacctggtgg
     2641 catagtcatc ctggagtctt gcggtggtgc acgcatctgg gctttaggtc gcaacgtgat
     2701 ccgagcagga ggtgtcaccg caaccccaac cggaggatgt gttaggttaa tgggattatc
     2761 tgcgccaacc atgccatggt ccgagatctt tcgtgagctc ttctctctct taggtagaat
     2821 ttggtcatct gtcaaagtat cagccctagt actaactgct cttggaatgt acgcatctag
     2881 atttagacca aaatcggaag caaaaggaaa aaccaaattg aagattggga catacagggg
     2941 tcgcggtgta gcgctgactg atgacgagta cgatgagtgg cgcgaacaca acgcctccag
     3001 aaaattggat ttgtcagtgg aggatttctt aatgttgcgc catcgtgccg ctctaggagc
     3061 cgacgacaat gatgcagtaa aattccggtc gtggtggaac tccagaacca aaatggccaa
     3121 tgattatgag gatgtcaccg taattggcaa aggtggcgtc aaacatgaaa agatcagaac
     3181 caatacccta aaagctgtgg atcgtggtta tgacgtcagc tttgctgagg aatcaggacc
     3241 aggcaccaag ttccacaaga atgcaattgg atctgtcaca gatgtttgtg gggagcacaa
     3301 aggctattgc atccacatgg gccacggtgt ttacgcatcc gtagctcacg tggtgaaagg
     3361 ggattcattt ttcttgggtg aaaggatttt tgatcttaag actaatggtg aattttgctg
     3421 ctttcgcagc acgaaaattc tacctagtgc tgcacctttc ttttctggga agcccactcg
     3481 tgatccgtgg ggatcccccg tggcaactga gtggaagcct aaaatgtaca caacaacctc
     3541 tggaaagatt ctggggtgct ttgcaacaac ttcaactgaa actcacccgg gagactgtgg
     3601 cctcccatat attgatgaca acgggagggt gaccggcctc cacactggct ctgggggacc
     3661 caaaacccca agtgccaagt tggtggtgcc atatgtgcat attgacatga agactaaatc
     3721 cgtcactgct caaaagtatg acgtaacaaa gcctgatata agttacaaag gcttaatttg
     3781 taagcaattg gatgagatta ggattatacc aaaaggcaca cgtctccatg tctccccagc
     3841 ccacactgag gattatcaag aatgctcaca ccaacccgca tcacttggaa gcggggatcc
     3901 ccgctgtcca aaatctctca ctgctatagt tgttgattct ctaaaaccat actgtgagaa
     3961 cgttgagggt cctccacatg atgttttgca cagagttcaa aagatgctta tcgaccacct
     4021 ttcaggcttt gtccctatga acatttcctc ggaaacctct atgctctcag ctttccacaa
     4081 actcaatcat gatacttcct gtggaccata cttgggtggc agaaagaaag atcacatggc
     4141 taacggtgag ccggacaagc agttattgga tctcctgtct gcaaaatgga aattggcaac
     4201 ccaaggcata gcactaccac atgagtacac aattgggcta aaggacgagt taaggcccgt
     4261 ggagaaggtt agtgaaggga agagaaggat gatttggggt tgtgatgttg gcgtcgctac
     4321 tgtctgtgca gctgcgttca agggtgttag cgatgccatc acagcaaacc accagtacgg
     4381 gcctatacag gttggtatca acatggatag ccccagcgtc gaagcgctgt tccaaaggat
     4441 caaaagcgcg gccaaggtat ttgcggtcga ttattccaaa tgggattcga cccaatcgcc
     4501 tcgtgtcagt gcagcttcaa ttgacatcct tcgttacttt tccgatcgct ctccaattgt
     4561 tgactcagcc tctaacacac tgaagagccc tcctgttgca atctttaatg gtgttgctgt
     4621 aaaagtgtcc tctggcttac catctggaat gcctcttacc tcagtaatca attcccttaa
     4681 tcattgtctg tatgttgggt gtgccattct tcaatcccta gaagctaagg ccattcccgt
     4741 cacttggaac cttttctcaa cttttgatat catgacttac ggggatgatg gtgtctacat
     4801 gtttcctatt atgtatgcaa gtattagtga ccaaattttt ggaaatcttt cttcctatgg
     4861 cctgaaacca actcgggttg acaagtccgt tggagcaatt gagcctattg atcctgactc
     4921 tgttgttttc ttgaagagaa caatcacaag gacacctcag gggataaggg gtttacttga
     4981 tcgcagctct ataataagac aattctatta tattaaaggt gagaactccg atgactggaa
     5041 gagcccccca aaacatattg acccaacatc tcgagggcaa cagctttgga atgcctgtct
     5101 gtacgctagc caacatggct tggagttttt caacaaggtt tacaggctgg ccgagagggc
     5161 tgttgaatat gaagagctgc actttgaacc cccaacatat gcttcggctt tggatcatta
     5221 caacagccag ttcaatggcg tggaggcgcg gtctgaccag atcgactcga gtggcatgac
     5281 cgccctacac tgtgatgtgt tcgaagtttg agcatgtgct caacctgcgc taacgtgctt
     5341 aaatattatg attgggaccc ccatttcaaa ttggtaatca accccaacaa cttcctctct
     5401 gttggctttt gtagtaaccc tttaatgtgt tgctacccag aactccttcc ggaatttgga
     5461 actgtttggg attgcgatcg gtcaccactt gaaatttacc tagaatcaat acttggtgat
     5521 gatgaatggg catccacttt tgacgctgtt gacccagtcg ttcccccaat gcactggggt
     5581 gctgctggaa aaattttcca gccacacccc ggtgttctca tgcaccatct cattggtaag
     5641 gttgctgcag gttgggaccc cgatctgcct ctaattcgac tcgaggcgga tgacgggtca
     5701 atcacagcac ccgagcaagg aacaatggtt ggcggcgtca tcgctgaacc cagcgcccag
     5761 atgtcaacag ctgctgatat ggccaccggg aaaagcgttg attctgagtg ggaggcattc
     5821 ttctcctttc acaccagcgt caattggagt acatctgaaa cccaaggaaa gattctcttc
     5881 aaacaatcct taggcccttt gctcaaccca tatctagaac accttgctaa gctatatgtt
     5941 gcgtggtctg ggtcgattga ggttaggttc tctatctctg gctctggtgt ctttggtggg
     6001 aagctcgcag ctattgttgt acctcctggg gttgatccag tgcagagtac ttcgatgcta
     6061 caataccccc atgttttgtt tgatgctcgt caggtggaac cagttatctt ctgtcttcct
     6121 gatctaagaa gcaccctgta ccaccttatg tctgacactg acactacatc cttggtcatt
     6181 atggtgtaca atgatctcat caatccctat gccaatgatg ccaactcttc tgggtgtatt
     6241 gtcactgtcg agacaaaacc tggccctgac ttcaagtttc acctccttaa gccacccgga
     6301 tctatgctaa cccatggctc tatcccttct gatttaattc ccaaaacatc ttcgctctgg
     6361 atcggtaacc gctactggtc agacataact gattttgtga ttcggccgtt tgtcttccaa
     6421 gcaaatcgtc attttgactt taatcaagag accgcagggt ggagcacacc acggtttcgg
     6481 cctatatctg ttaccattac tgaacagaac ggagcaaaat tgggcattgg ggtggcaaca
     6541 gattacatag tgcctggaat ccctgatggc tggcctgaca ccacaattcc tggggagttg
     6601 ataccagctg gtgattacgc aatcaccaat ggtactggca atgacatcac cacggctaca
     6661 ggatatgaca ctgctgatat aattaagaac aataccaact ttaggggcat gtacatatgt
     6721 ggttcgctcc agcgtgcctg gggtgataag aaaatttcca acactgcctt tatcaccact
     6781 gccaccctag atggtgacaa caacaacaag atcaatccct gtaataccat agaccagtca
     6841 aagatcgtcg tgtttcaaga caaccatgtt ggaaagaaag cgcaaacctc agacgataca
     6901 ttggccctgc ttggttacac tggcattggt gagcaggcca tcgggtctga tagggaccgg
     6961 gttgtgcgca tcagcactct ccctgaaact ggtgctcgag gcggtaacca cccaattttc
     7021 tacaagaact ccattaaatt gggatatgta attaggtcta ttgatgtctt taattcacaa
     7081 atcttgcaca cttccagaca gttatcgcta aatcattacc tactcccacc tgattctttt
     7141 gccgtctata gaataattga ctcaaatggc tcgtggtttg atattggaat tgatagtgat
     7201 gggttctctt ttgttggtgt ttctggcttt ggtaaattag aatttcccct ttctgcctcc
     7261 tacatgggaa tacaattggc aaagatccgg cttgcctcta acattaggag tcccatgact
     7321 aagttatgaa ttcaatatta ggcctgattg atactgttac taacactatt ggtaaagctc
     7381 agcagattga attggacaaa gctgcacttg gtcaacagcg tgaattggct ctccagcgca
     7441 ttggcttgga ccgccaagcc ttaaacaacc aagttgagca gtttaacaaa attcttgagc
     7501 aaagggtaca aggcccaatc caatccgttc gccttgcgcg cgcggctgga tttagggttg
     7561 acccttactc atacacaaac caaaactttt atgacgatca attaaatgca attagactat
     7621 catataaaaa tttgtttaaa atttgatcat atatcccttt gggctgccgc acctgcgcct
     7681 aaccccaggg
//