From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Streptomyces aureofaciens principal sigma- like factor (hrdB) gene,
Date: 28 Jan 93 05:48:52 GMT
Distribution: bionet
Checksum: 51210 5

LOCUS       STMHRDB      2332 bp ds-DNA             BCT       27-JAN-1993
DEFINITION  Streptomyces aureofaciens principal sigma- like factor (hrdB) gene,
            complete cds.
ACCESSION   M90411
KEYWORDS    principal sigma-like factor; rpoD homologue.
SOURCE      Streptomyces aureofaciens (strain CCM 3239) DNA.
  ORGANISM  Streptomyces aureofaciens
            Prokaryotae; Firmicutes; Streptomycetaceae.
REFERENCE   1  (bases 1 to 2332)
  AUTHORS   Kormanec,J., Farkasovsky,M. and Potuckova,L.
  TITLE     Four genes in Streptomyces aureofaciens containing a domain
            characteristic of principal sigma factors
  JOURNAL   Gene 122, 63-70 (1992)
  STANDARD  full automatic
FEATURES             Location/Qualifiers
     repeat_unit     13..41
                     /rpt_type=INVERTED
                     /gene="hrdB"
     RBS             325..331
                     /gene="hrdB"
     repeat_unit     1950..1986
                     /rpt_type=INVERTED
                     /gene="hrdB"
     CDS             337..1914
                     /gene="hrdB"
                     /product="principal sigma-like factor"
                     /codon_start=1
                     /translation="MSASTSRTLPPEIADSESVMALIERGKAEGQIAGDDVRRAFEAD
                     QIPATQWKNVLRSLNQILEEEGVTLMVSAAESPRRTPRKSVAAKSPAKRTATKTVAAK
                     TAAPPAAAGIVADTGTGTAEPDITDALAEEPVAEPAAKKTAARKTAAKKAAPAKKTAA
                     KKTAAKKTAAKKDADEDGEETADEGPDAPKAEAEEEEEGGENKGFVISDDEDDAPAQQ
                     VVVAGATADPVKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAEDKLANSDKLAPKLKR
                     ELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDY
                     TKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPT
                     PEELAKELDMTPEKVIEVQKYGREPISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSF
                     TLLQEQLHSVLDTLSEREAGVVSMRFGLTDGQPKTLDEIGKVYGVTRERIRQIESKTM
                     SKLRHPSRSQVLRDYLD"
BASE COUNT      406 a    813 c    833 g    280 t
ORIGIN      
        1 ggtgcaccac cggtcgccgg gcccgtttcg ggtccggcga ctccggcgtg cggggccttc
       61 ccgggcctgc cggaagcagg cgtacgaccg tgggacgggc acggacggga acccgatgtg
      121 attcgggcca cgaagattgg gcgtaacgct ccgcgacgtc acgcgatgac gtaagaggtg
      181 atggccgacg gagggaagac agcagccctt gggggtgctg tgcagctccc cggcccctgc
      241 ccgcgccccc ggcccatccc cagtcggtgg tcgtcggctc cggtccagca ccaggccggg
      301 gtcggaagcc gttcccatcg ttccgagagg ttgttcgtgt cggccagcac atcccgtacg
      361 ctcccgccgg agatcgccga ttccgagtct gtgatggcgc tcatcgagcg gggcaaggcc
      421 gaggggcaga tcgccggcga tgacgtgcgt cgggccttcg aggctgacca gattcctgcg
      481 acccagtgga agaatgttct gcgcagcctc aaccagatcc ttgaggaaga gggtgtgaca
      541 ctgatggtca gtgccgcgga gtcgcccagg cgcacccccc gcaagagcgt cgcggcgaag
      601 agccccgcca agcggacggc gaccaagacc gtcgcggcga agacggcggc ccctccggcc
      661 gcggccggaa tcgtcgcgga caccgggacc gggacggcgg agccggacat caccgacgcc
      721 ctggccgagg agcccgtggc cgagcccgcc gcgaagaaga ccgcagcccg gaagacggcc
      781 gcgaagaagg ccgctcccgc caagaagacc gcggcgaaga agacggccgc gaagaagacc
      841 gcggccaaga aggacgcgga cgaggacggc gaggagaccg cggacgaggg ccccgacgcc
      901 ccgaaggccg aggccgagga ggaagaggag ggcggggaga acaagggctt cgtcatctcg
      961 gacgacgagg acgacgcccc cgcccagcag gtcgtcgtgg ccggcgccac cgccgacccc
     1021 gtcaaggact acctcaagca gatcggcaag gtcccgctgc tcaacgccga gcaggaggtc
     1081 gagctcgcca agcgcatcga ggcgggcctg ttcgccgagg acaagctggc caactccgac
     1141 aagctggcgc ccaagctcaa gcgcgagctg gagatcatcg ccgaggacgg ccgccgcgcc
     1201 aagaaccacc tgctggaggc caacctccgt ctcgtggtct ccctggccaa gcgctacacc
     1261 ggccgcggca tgctcttcct ggacctgatc caggagggca acctgggcct gattcgcgcg
     1321 gtggagaagt tcgactacac caagggctac aagttctcca cgtacgcgac ctggtggatc
     1381 cggcaggcga tcacccgcgc catggccgac caggcccgca ccatccgcat tccggtgcac
     1441 atggtcgaag tgatcaacaa gctcgcccgc gtgcagcgcc agatgctcca ggacctcggc
     1501 cgcgagccca ccccggagga gctggccaag gaactcgaca tgacccccga gaaggtcatc
     1561 gaggtccaga agtacggccg cgagccgatc tccctgcaca cccccctcgg cgaggacggc
     1621 gacagcgagt tcggtgacct gatcgaggac tccgaggcgg tcgtcccggc cgacgccgtg
     1681 agcttcacgc tgctgcagga gcagctgcac tcggtcctcg acacgctgag cgagcgcgag
     1741 gccggggtgg tctcgatgcg gttcggcctc accgacggcc agcccaagac cctcgacgag
     1801 atcggcaagg tctacggggt cacccgcgag cgcatccgcc agatcgagtc caagaccatg
     1861 tcgaagttgc gccacccgtc ccggtcccag gtcctgcgcg actacctgga ctgaccgacg
     1921 gaacggccga agggtccggt gccgccggtc cgggcccggc acgggtgcgc cccgggccgg
     1981 gaccggggcg gacggcgacc gggtcctgag cggatcccga gcggccccgt accggatctc
     2041 caccggccgg ggcgcggggg cgcgcgacgg tggccgcgcg ggtgcgcccg gccaccgggc
     2101 gacccactct gggtggagtc atgcacactc agagtcagga ggcctcatgc gtcgttcctt
     2161 cgcccgtgct ctggcgggct cgctgaccct ggtggcggga gcggccgtgc tgccgctggc
     2221 ccaggccccc ggggtggccg cgaacagcgt ggtcataggc gggaagccgg tcaacgtggc
     2281 cgacagcccg tgggtcgtgg ccctcgccag tcgtgaccgg tccgggggta cc
//