From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: potassium channel protein A homolog...orf H3R [Shope fibroma virus
Date: 27 Jan 93 05:55:34 GMT
Distribution: bionet
Checksum: 00131 10

LOCUS       S117791      3985 bp    DNA             VRL       26-JAN-1993
DEFINITION  potassium channel protein A homolog...orf H3R  [Shope fibroma virus
            SFV, rabbits, Genomic, 5 genes, 3985 nt]
ACCESSION   S48098
KEYWORDS    .
SOURCE      Shope fibroma virus SFV rabbits
  ORGANISM  Unclassified.
            Unclassified.
REFERENCE   1  (bases 1 to 3985)
  AUTHORS   Massung,R.F., McFadden,G. and Moyer,R.W.
  TITLE     Nucleotide sequence analysis of a unique near-terminal region of
            the tumorigenic poxvirus, Shope fibroma virus.
  JOURNAL   J. Gen. Virol. 73 ( Pt 11), 2903-2911 (1992)
  STANDARD  full automatic
COMMENT     This entry [NCBI gibbsq 117791] was created by the journal scanning
            component of NCBI/GenBank at the National Library of Medicine.
            This sequence comes from Fig. 2.
FEATURES             Location/Qualifiers
     CDS             3..368
                     /partial
                     /note="Description: potassium channel protein A homolog;
                     For the protein sequence (NCBI gibbsq 117792):  Method:
                     conceptual translation supplied by author.  This sequence
                     comes from Fig. 2."
                     /codon_start=1
                     /translation="IPEVPKCVRRVHGDSLNIFTFVEYRSSEDLDNEDAVNEKLADTN
                     THPDDTIVDHQTHFFMVIAILCIILFIFTLSVILLFCSCTSSNILHYNKLHYNKLIYN
                     LQCTTKIRSSVTFDGGEAI"
     CDS             314..637
                     /note="Description: virulence-related protein N1L homolog;
                      For the protein sequence (NCBI gibbsq 117794):  Method:
                     conceptual translation supplied by author.  This sequence
                     comes from Fig. 2."
                     /codon_start=1
                     /translation="MYDEDTVKRYIRWRGGDLDIPYEDVFETYMEFDILAKKKFGECD
                     YDFIKPMKLTLTDGPRLGKLLTNEHMTPEEAIGLCGYSPRSHTFPLRHQLDVLFTELF
                     SVMKL"
     CDS             696..1559
                     /note="Description: protein kinase homolog;  For the
                     protein sequence (NCBI gibbsq 117795):  Method: conceptual
                     translation supplied by author.  This sequence comes from
                     Fig. 2."
                     /codon_start=1
                     /translation="MSSYSIKRVNPHLIDKYTFTLIKESDQCFIHKGVFNNTLVVIRT
                     FKKFHKGCKAILELTENEIHNVKSVDRFNLLKVYGFFVDVIDDLPRVSIILEYCTKGY
                     LREVLSKERDLQFKTRLDMALDCCTGLVNVYKYTKKPYEHLSSVNFLVDEDYTTKILC
                     HGLEKTLSVPPFKNINMLAYRPRRILLDIFSKYTEKDDVYSLGVVLWEIFTGCVPFDH
                     ATSTDIYDAVVNKNNELKIDTKCPRYIKNIVDRCTSHQEDIRPTVHEVLHKISIYRCI
                     MQADELMETDV"
     CDS             1627..3648
                     /note="Description: orf H3R;  erythrocyte ankyrin homolog;
                      For the protein sequence (NCBI gibbsq 117796):  Method:
                     conceptual translation supplied by author.  This sequence
                     comes from Fig. 2."
                     /codon_start=1
                     /translation="MDHVSSYIILTKSKRINVFSIRSALKQGHSPFLMNLPNYKRQVV
                     EDYLRKRYVKADVLKTILDSGIRLSKKAVTDTMSTYLLNDDVKYNAKNVMRVLDVLFA
                     HGARINKSGYNNHPLLCLITNKKLAQLTILEYFVQRRMNLDVKDVYGHNLLHLYLKSP
                     YPKLSIIKLLLDHGVDINAKTRMHRHTPLHIYLMNSHMDKKVVEFLLRNGADINYGNY
                     ETPLGTLFSHCSSFKLIKSITTKLLEYGADINFPAASGHSAMMSYLINNPDATVHPEY
                     VSYMVDCGANINQLTYRGHTPLLVYITMGLFIESDAITCMIDHGADPLVTVHGNSSLH
                     YYMRRYMLCKSVLDILLSTGVDINGINEKFHTPLHTYVDKNSKGVAPSIIQYMIDRGV
                     STARLSTTIFTESILETFLRRNRQYLNTTIEVVDYLLTVYPLNEPDEYGFTPLLSAVY
                     AVNLNFFNHFVKLGADINVVSMFGDTCVTLAVATNHVYFVTAVLQHKPSEQTIRRTLE
                     YFADKELVTNKQYKLIGKCITYAFTLNPVMYKEFSYISVDFKHIVEMCEEDILSMKRD
                     VLDKVTVYDLVFNKTGTIPVKYLRDYRVTRYVNSAIYGDRVKTIIHNSVERSKQIRNI
                     LIALEVYCRDTLWLTLPVEIRTIVVEKLPLCDVHTLAENLTVFKREKLI"
     CDS             3650..3985
                     /partial
                     /note="Description: orf H4R;  erythrocyte ankyrin homolog;
                      For the protein sequence (NCBI gibbsq 117797):  Method:
                     conceptual translation supplied by author.  This sequence
                     comes from Fig. 2."
                     /codon_start=1
                     /translation="MAIMASLHRYISFTDSVYINSINFLLRSGFDVNSTYKGNSIITL
                     YLKRPDVKIKVVKFLIDNGCDVNHKGYIETPLCAILKNRAITPSKTKKLVTLLLKAGA
                     DINLKSVNGS"
BASE COUNT     1311 a    783 c    801 g   1090 t
ORIGIN      
        1 ggatccccga ggttcctaag tgtgtccgtc gcgtccatgg cgactcgctt aatatattca
       61 ccttcgtaga atatagatct tcggaagatc tagacaacga agacgcagta aacgagaaac
      121 tggctgacac gaatactcac cctgacgaca ccatcgtcga tcaccagaca cacttcttta
      181 tggtgatcgc tattctatgt attatcttgt ttatatttac attaagtgtg atattattgt
      241 tttgttcgtg tactagttca aatattttac attacaataa attgcattac aataagttga
      301 tatataattt acaatgtacg acgaagatac ggtcaagcgt tacattcgat ggaggggagg
      361 cgatctagac ataccctacg aggacgtctt cgagacgtac atggagttcg acatattggc
      421 taagaagaag tttggagagt gtgattacga ctttataaaa cctatgaaac ttacgttgac
      481 agacggaccc agactaggta aactactaac gaacgaacac atgacacccg aggaagcgat
      541 cggattatgt ggatactcgc cgagaagtca cacattccca ttacgacatc aattggacgt
      601 cttattcacc gaattgttta gtgtgatgaa actataaact ataaactata aactataaac
      661 aataaaacat aaattaaatg atttaactac gaaccatgtc gtcgtattct attaagcgag
      721 tgaaccctca cctaatagat aaatatacgt tcactttgat caaggaatcc gatcagtgtt
      781 tcatacacaa aggggtgttc aacaacaccc ttgtcgtcat tcgcacgttt aaaaagttcc
      841 acaaaggatg taaagcgata ttagaattaa cggagaatga gatccataac gtaaaaagcg
      901 tcgataggtt taatctgttg aaagtatatg ggttcttcgt cgacgtcata gacgacttac
      961 ccagagtgtc catcattcta gaatactgta ccaaaggtta cttgagagag gtattgtcta
     1021 aagaacgaga cctacagttt aaaacgagac tagacatggc gctggactgt tgcaccggtt
     1081 tagttaacgt gtataaatac acgaagaaac catacgaaca cctgtccagc gttaactttt
     1141 tagtggacga ggattatacg acgaagatac tctgtcacgg attagagaag acgttatcag
     1201 ttcccccgtt taaaaacatt aacatgcttg catatcgtcc tcgccgtatt ttgttagata
     1261 tctttagtaa atacactgag aaagacgatg tatatagttt aggtgtcgta ttatgggaaa
     1321 tattcacagg atgtgttcct ttcgatcacg caacgtctac ggacatttat gacgccgtag
     1381 tgaataagaa taacgaatta aaaatagaca ccaaatgccc cagatatatc aagaacatcg
     1441 tcgaccggtg tacgtcgcat caggaggata tacgtcctac tgtacacgag gtattacaca
     1501 agatatcaat atatagatgt atcatgcagg cggatgagtt aatggaaacg gacgtgtaaa
     1561 gaacaatttt tatacatata acttcataaa cttaaataaa agaactatac ttgtaagtgt
     1621 atcactatgg atcatgtaag ttcttacatt atattaacaa agtcaaaacg catcaatgtg
     1681 ttctctatac gttccgcgtt aaaacagggg catagtccct ttctgatgaa tttaccaaac
     1741 tataaacgtc aggtggtgga ggattatctg cgtaaacggt acgtcaaagc cgacgtgtta
     1801 aaaacgatat tggactcagg aattcggcta tctaagaaag cggtaacgga taccatgtcc
     1861 acgtatctat taaacgacga tgtaaagtat aacgccaaaa acgttatgcg tgtattggat
     1921 gtgttgtttg cacacggggc gaggatcaat aaatcggggt ataacaacca cccgttactg
     1981 tgtcttatta cgaataaaaa actggcacag ttaaccatat tagagtattt cgtacaacgt
     2041 cgtatgaatc ttgacgttaa agacgtatat ggacacaatc tgctacatct gtatctgaaa
     2101 tctccttatc ccaagctgag tatcattaaa ctattattag accacggagt agatattaac
     2161 gcaaaaacga gaatgcatcg gcatacgccc cttcacatct acctgatgaa ttcgcacatg
     2221 gataaaaagg ttgtggagtt tctactacgt aacggtgcgg atataaacta tggtaattat
     2281 gagaccccgc tggggacgtt gttctcccac tgttcctcgt ttaaactgat caagagcata
     2341 acgactaaat tgttggagta tggagcggat ataaattttc cagcggcaag cggacacagt
     2401 gccatgatgt cttatcttat taataatccg gatgctacag tgcatcccga atatgtatcg
     2461 tatatggtag actgtggtgc gaacatcaac caacttacgt atagggggca taccccttta
     2521 ctcgtataca taacaatggg gttatttatc gaatccgacg cgatcacatg catgatagat
     2581 cacggagcag atcctctcgt taccgtacac ggaaatagca gtttacatta ctacatgaga
     2641 cggtacatgc tatgtaaaag cgtactcgac atcttgttgt cgacgggtgt agacatcaat
     2701 ggaataaacg aaaagtttca tacacctctg catacgtatg tagacaaaaa ctccaaggga
     2761 gtagcaccgt ctattataca atatatgatc gatcgaggtg tatctactgc tagattatcc
     2821 actacgattt ttaccgaatc tatactggag acgtttttaa gacggaatag acagtatctc
     2881 aacacgacta tagaagtagt cgattaccta ctaaccgtgt accccctcaa tgaaccagac
     2941 gagtacggat ttaccccact tctatccgcg gtgtacgcag tcaatctcaa cttctttaat
     3001 catttcgtta aactaggagc ggacataaac gtcgtatcca tgttcggaga tacgtgtgtt
     3061 acactagccg tggcgacgaa tcacgtatac ttcgtaaccg ccgtattaca acataaaccc
     3121 tcagagcaaa cgatacgtcg gactctagaa tatttcgcgg ataaagaact cgttacgaac
     3181 aaacaatata aactgatagg aaaatgtatt acgtatgcgt ttactctcaa tcccgtcatg
     3241 tacaaagagt tcagttacat atcagtcgat tttaaacaca tcgtcgagat gtgcgaagaa
     3301 gatatcctat ccatgaaacg cgacgtgttg gataaggtta ccgtgtacga cttggtgttt
     3361 aacaagacag gtacgatacc cgttaaatac ttacgagatt acagggttac acgatacgta
     3421 aactccgcta tttacggaga ccgagttaaa acgatcatac acaattcagt agaacgaagt
     3481 aaacagatac gtaacatttt aatcgcgtta gaagtatatt gcagggatac attatggtta
     3541 actcttcccg tggagatacg aacgatagtc gtagaaaaac taccattgtg tgatgtacat
     3601 acgttggcgg agaatttgac cgtattcaaa cgtgaaaaac taatataata tggcaatcat
     3661 ggcctcgtta catagataca ttagtttcac cgacagtgta tatataaact ctattaactt
     3721 tctactacga tcgggattcg atgtgaatag cacgtataag gggaatagta tcattactct
     3781 ctatttgaaa cgaccagatg taaagataaa agtcgtgaaa ttcttaatag acaacggatg
     3841 tgacgtcaat cacaaagggt atatagagac cccgttatgt gctattttga agaacagagc
     3901 cattacgccc agtaagacta aaaaactagt aacactattg ttgaaggcgg gagccgacat
     3961 aaatctaaaa tcggtcaatg gatcc
//