From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: coat protein, RNA-dependent RNA polymerase [Leishmania RNA virus 1
Date: 3 Jan 93 22:20:18 GMT
Distribution: bionet
Checksum: 42701 11

LOCUS       S113969      5284 bp    RNA             UNA       24-NOV-1992
DEFINITION  coat protein, RNA-dependent RNA polymerase [Leishmania RNA virus 1
            LRV1, Genomic RNA Complete, 3 genes, 5284 nt]
ACCESSION   S44969 M92355
KEYWORDS    .
SOURCE      Leishmania RNA virus 1 LRV1
  ORGANISM  Unclassified.
            Unclassified.
REFERENCE   1  (bases 1 to 5284)
  AUTHORS   Stuart,K.D., Weeks,R., Guilbride,L. and Myler,P.J.
  TITLE     Molecular organization of Leishmania RNA virus 1.
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 89, 8596-8600 (1992)
  STANDARD  full automatic
COMMENT     This entry [NCBI gibbsq 113969] was created by the journal scanning
            component of NCBI/GenBank at the National Library of Medicine.
            This sequence comes from Fig. 2.
FEATURES             Location/Qualifiers
     CDS             3..233
                     /note="Description: orf1;  For the protein sequence (NCBI
                     gibbsq 113972):  Method: conceptual translation supplied
                     by author.  This sequence comes from Fig. 2."
                     /codon_start=1
                     /translation="NSNEMPMSLDSLAVGMVALLVDYYSKALRASLNSTGIDRRWGDQ
                     WPSTVELTGRGVIEWESPTFCICSSSRSTAIV"
     CDS             298..2673
                     /note="For the protein sequence (NCBI gibbsq 113978):
                     Method: conceptual translation supplied by author.  This
                     sequence comes from Fig. 2."
                     /product="coat protein"
                     /codon_start=1
                     /translation="LRSVSRIRNVSKFLVTIDQQLHPTTTANISSILNPRIPREHTLS
                     IQFLDRMSDTPNSDKVACGRKPMFCEIIKLANRKRLILDTTGERVYDARINYCSTADA
                     TVQADCHIYWRLKLRRTDAVFEEYTGQGYALDTASYPQQYADIIRGYYSKHVSSALAA
                     NTQHFVNVLAMLRHAGACIAHYCMTGKIDFDILSKKKHKNKEVVTLSSADSLSFLPHS
                     ALYLPSALRASDPEIFNVLYLLGCACDASIAMDNIANTSGAAKYAMPHYNPLQLSHAL
                     HVTIFYMLGLMDSCGYGEDAVLALTAGLHSVTTVIAHSDEGAITRDALRELSYTQPYG
                     TMPVPIAGYFQHINVLFTTQPAWDQFAGIWDYVILATAALVHLSDPGMTVNDVTYPTT
                     LTTKVASVDGRNSDIAAQMMHSATRFCDIYIENLCLFWGVVANPDGNASQALLHAFNV
                     VACGTEPNRHLEMNVMAPWYWVESSALFSDYSQFRSPISSAGYGPQSIYGARLVLAAT
                     NSLEFTGEAGDYSAYRFEWTTMRHNPLFNILNKRVGDGLANVDFRLRPFNEWLLEGQP
                     SRRSCDAVGHGTPTATCNHKTPNRNTVDEFIWGSTSCDLFHPAELTSYTAVCVRFRNY
                     LSEADGDVRVLNTPTREVIEGNVVTRCDGIRCLDSNKRIQHVPEVARRYCMMARYLQA
                     RTFGALTIGDDIIRGFDKVDKVVKMHKSNNRLGQMPLIDVTGLCQPMIETSTARASMT
                     TRIDPNRLAAATARIELPLAPRCTSSLIPSSDAVPEPEPHVGEPGNGSGCA"
     CDS             2600..5236
                     /note="RDRP;  For the protein sequence (NCBI gibbsq
                     113984):  Method: conceptual translation supplied by
                     author.  This sequence comes from Fig. 2."
                     /product="RNA-dependent RNA polymerase"
                     /codon_start=1
                     /translation="FRHPMQCPNQNHMLVNRAMVVAALDSFEDARRIISGVLDLSRLT
                     NTSVKGQHTNDTNYFSRYSNFFSQMPAIILNQLKCCIKAQVDDAVKMVLQKAKKVEVS
                     KPVEKMLTFTTLNTYLGYPESTGCVMEYTEEQSGPIAAKLLITLLSSTLNAMVRPKSD
                     PNISQNKIPRHYYQLKVHVGAQKKVNLTAIEVIRGCQHECSVVYCEFVRYSAYFAGLY
                     DDQVAAILLYAVAAHNVQGFGARFCVLWALMCVRIAGFADDINIYIKHRGMSGLLPQL
                     VEMKCLLGRGVNEIDVETEARRRLDVGSLSMQRLDENELRAAVRLIYSEELRRPVTYP
                     LICDFWSSRWLWAANGSHSRALEHAHPELATRKEGQAYRKAVMEQWQHNPMDRWDGTV
                     YVTPSAKLEHGKTRLLLACDTLSYMWFEYALRPVERIWENSNVILDPGSMGNCGIATR
                     INGWRNGMPGQSFFAVDYDDFNSQHTLMSQKIVFEELFHHIGYNASWVKTLVDSFDSM
                     ELWIKGKCAGIMAGTLMSGHRATSFINSVLNRAYIICAGGHVPTSMHVGDDILMSCTL
                     GHADNLIANLNRKGVRLNASKQVFSKTSGEFLRVAHREHTSHGYLARVISSAVSGNWV
                     SDHTLNQQEALMNAIVCCRGILNRSLPGEKNPVVRVISRSVSKRTKIEEKTIRLLLSG
                     RACLKGGVVYGEQTNYIQVYRINCRVERSEEKLPPYRHATEDYLNNHLADIEVMAVRQ
                     YGSDIADIMAQASWKKSMSTEGAEDVSRLSLQRDKTLPCLHCITEKETSLLPVRYGLF
                     SSYPILMMLKDRIPIKEALKLAVTIGYRPQPNSDLELDLWGESNNSCAIEGVLPYNEA
                     TSLAQKLPCGGVVIQVIHNVYV"
BASE COUNT     1466 a   1113 c   1341 g   1364 t
ORIGIN      
        1 tgaattcaaa cgagatgcct atgagtttgg attcgctagc tgttgggatg gtagcgttac
       61 ttgtggacta ctacagtaaa gcattaaggg ctagccttaa ctccactgga attgatagaa
      121 ggtggggaga tcagtggcct tcaacggttg aactgactgg acggggggta atcgagtggg
      181 agtcccccac attctgcatt tgcagttcct cacgatccac agcgatcgtc tgattgtacc
      241 caggttactg ccgcgagcgt aagggagtgt tttggcagac acagtctaag acgctgacta
      301 cggtcggtgt caaggatccg aaacgtaagc aagtttcttg ttactattga tcaacagcta
      361 catcctacaa caacagcaaa catatcgtcc atcctcaacc caagaattcc acgtgaacat
      421 accctgagta tacaattctt ggacaggatg tctgatacac caaactctga taaagtcgcg
      481 tgtggaagga agcccatgtt ctgcgagatt ataaaactcg cgaacaggaa gcggttgatt
      541 ttggatacaa ctggtgagcg agtgtacgac gcccgtataa attactgctc aacggcagat
      601 gcgaccgttc aagccgattg ccatatatac tggcgcttga agctgcgacg cactgatgcc
      661 gtttttgaag aatatactgg tcagggctac gcgctcgaca ctgcttcata cccccaacag
      721 tatgctgata tcatcagggg gtattacagt aagcatgtgt caagtgcact agctgccaac
      781 acccaacact ttgtgaacgt tttggctatg ttacgtcatg ctggcgcttg tattgcgcat
      841 tattgcatga cagggaaaat tgattttgac atcttaagca aaaagaaaca taagaataaa
      901 gaagttgtga cactaagcag tgctgacagt ttgagttttt tgcctcactc ggctctatat
      961 ctgccttcag cgttacgtgc aagcgatcca gaaatattta atgttttgta cctgcttggt
     1021 tgtgcttgtg atgcaagcat agcaatggac aacattgcga acacgagtgg ggcagctaaa
     1081 tatgcgatgc ctcattataa cccactgcaa ctatctcacg ctctacatgt aaccatattc
     1141 tatatgctgg gcttgatgga cagttgcggg tatggggaag atgcagtcct ggctttaacg
     1201 gccggcctgc attctgtcac aacggtgata gcacacagtg atgaaggagc tataactcgt
     1261 gatgctttaa gagagctctc atacacacag ccttatggca caatgccggt gccgattgca
     1321 ggttactttc agcacataaa tgtgctgttt acaacacagc ctgcttggga tcaatttgca
     1381 gggatttggg attatgtcat cttggcaact gctgcattgg ttcatctttc tgatcctgga
     1441 atgacagtga atgacgtcac atatccgact acactcacta caaaagttgc atcagtagat
     1501 ggccgtaaca gtgacatagc agcacagatg atgcacagtg ccacacggtt ctgtgatata
     1561 tacattgaga acttatgtct cttttggggt gtggtcgcga acccagacgg gaatgcgagc
     1621 caagctttac tgcacgcatt caatgtggtt gcttgtggca cagagccaaa caggcatctt
     1681 gaaatgaatg tgatggcgcc atggtattgg gttgagagtt cagcactatt cagcgactac
     1741 tcccaatttc gatcaccaat ctcctcagcg ggatatgggc cgcaaagcat ctacggtgca
     1801 cgtttggtgc ttgctgccac caattctttg gaattcacgg gggaagcagg cgattactca
     1861 gcataccgtt ttgagtggac gacaatgcgg cacaacccac tatttaacat tctcaataaa
     1921 cgcgtcggtg atggccttgc taatgtggat ttcaggctgc gaccgtttaa tgagtggttg
     1981 ctagaaggcc aaccgagccg tcgaagctgt gatgctgttg gccacggcac acctacggct
     2041 acatgtaacc acaagactcc gaaccgtaac acagtggacg agtttatttg gggcagcact
     2101 tcctgtgacc tctttcatcc agctgaacta acttcataca ccgccgtgtg tgttaggttc
     2161 aggaattatt tgtctgaagc cgacggtgat gtacgcgtac taaacacacc cactagggag
     2221 gttattgagg ggaatgttgt tacaaggtgt gacggcatac gctgcttgga cagcaacaag
     2281 cgcatacaac atgttcctga ggtcgccaga cgttattgca tgatggcaag gtatttgcaa
     2341 gcgcgtacct ttggagcgtt aactataggt gacgacataa tacgtggatt tgataaggtc
     2401 gataaggttg tgaaaatgca taagagcaat aatagattag gtcaaatgcc cttaatagat
     2461 gtaactggat tgtgtcagcc aatgattgaa acgagtactg ctcgtgcttc gatgactact
     2521 cgcattgatc caaacagact tgctgcagcc acagctcgta tagaactacc actagcacct
     2581 cgttgcacgt cctccctgat tccgtcatcc gatgcagtgc ccgaaccaga accacatgtt
     2641 ggtgaaccgg gcaatggtag tggctgcgct tgatagtttt gaggacgcga gacgcattat
     2701 tagtggggtt ctggatctat ctaggctgac taacacatct gttaaagggc aacatactaa
     2761 cgatactaac tattttagta ggtacagtaa cttcttctcc caaatgccag cgattattct
     2821 aaatcaactt aaatgctgca taaaggctca agttgatgac gccgtcaaaa tggttttaca
     2881 gaaggcaaaa aaggtagaag ttagcaaacc ggtggagaaa atgctcacat tcactactct
     2941 gaacacctat ctaggttatc cagaatctac ggggtgtgtt atggagtata ctgaggagca
     3001 atcagggccg atcgcagcta agcttctcat aacattgctt tcttcaacac tgaatgcaat
     3061 ggtccggcct aaaagtgacc caaatataag ccagaacaag ataccgcgtc actactacca
     3121 gcttaaggtc catgtcggcg cccaaaagaa agtcaatctg acggcgatag aggtgatacg
     3181 gggctgtcaa catgagtgta gtgtggtcta ttgtgaattt gtgcggtata gcgcgtattt
     3241 cgcaggctta tatgacgatc aggtggccgc catcctatta tatgcggtgg cggcacataa
     3301 cgtgcaagga tttggtgcgc ggttttgtgt gttgtgggct ttaatgtgtg ttcggatagc
     3361 tggcttcgct gatgacatca acatatacat aaagcataga gggatgtctg gcttgctacc
     3421 gcagttggtt gagatgaagt gtttgctggg gcgtggtgtc aatgagatcg atgttgagac
     3481 tgaagcaaga agaaggctag atgtcggcag tctaagcatg cagaggctcg acgagaatga
     3541 attgcgtgct gccgtccgac tgatctattc agaagaattg cgacggccgg tgacatatcc
     3601 cctaatttgt gatttttggt cttctcgttg gctgtgggct gcaaatgggt cacattcacg
     3661 agcattagaa catgcccatc ctgaacttgc aacaaggaaa gaaggacaag catacagaaa
     3721 agccgtgatg gaacagtggc agcacaaccc aatggaccgt tgggatggga cagtgtatgt
     3781 aactcctagc gcgaagcttg aacacgggaa gacgaggctg ttactcgcgt gtgatacgtt
     3841 atcatacatg tggttcgaat atgcgctacg accggtggaa aggatttggg agaatagtaa
     3901 tgttatcctg gatccaggaa gcatgggcaa ttgtgggata gctactagga ttaatggatg
     3961 gcggaatggt atgcctgggc aaagcttttt tgcagtcgac tatgacgatt tcaactcaca
     4021 acacaccctg atgtctcaaa aaatagtgtt tgaggagttg tttcatcaca tcgggtacaa
     4081 tgcatcctgg gttaaaactt tagtagactc ttttgatagc atggaattgt ggataaaagg
     4141 caagtgtgct ggcattatgg ctggaactct gatgagcggc catagggcta cgagctttat
     4201 aaactctgtg ctcaacaggg catacattat atgtgcggga gggcatgtgc cgacatcgat
     4261 gcacgtaggt gacgacatac tgatgtcttg cacgttaggc cacgctgata acttgatagc
     4321 taatctcaac aggaagggag tcaggttaaa tgccagcaaa caagtcttca gcaagacgag
     4381 tggtgagttt ttacgtgtgg cacaccgtga gcacacaagt catggttact tagcccgtgt
     4441 tatcagcagt gctgtatctg gcaattgggt cagtgaccac actctcaatc agcaggaggc
     4501 attgatgaat gccatagtgt gttgtcgtgg cattctcaac aggagcctac ctggtgagaa
     4561 gaacccagta gttagggtaa tatcgaggag tgtgagtaag agaaccaaga tagaagaaaa
     4621 aacaattaga ttattactaa gcggaagagc atgtcttaaa ggtggcgttg tatatggaga
     4681 gcagacaaat tacattcaag tctataggat caactgccga gtagagagat ctgaagagaa
     4741 actacctcca tataggcacg cgactgagga ctacctaaac aatcatttgg cagatattga
     4801 agtaatggca gtaaggcaat atggatcgga catcgctgat atcatggccc aggcaagctg
     4861 gaagaaatcc atgagtactg agggtgccga agatgtatcc cgcctatcac tgcaacgcga
     4921 caaaactctg ccttgcttgc attgtattac agaaaaagaa acctctctat tgccagttcg
     4981 ttacgggtta ttctctagtt atccaatcct catgatgctg aaggatagaa tacccataaa
     5041 agaagctctc aagcttgcgg tgacgatcgg ctatcgacct caaccaaaca gtgatctgga
     5101 gcttgatttg tggggtgaga gcaataattc gtgtgctatt gaaggagtgc ttccttacaa
     5161 tgaagctacg tcattagcac aaaaacttcc ttgtggtggt gtcgttatac aggtaataca
     5221 taacgtatac gtatagtgac taactacttg gaatatggca gaaagtgtca taaatcatca
     5281 tcat
//