HDTenEightyP/NetNews huggingface dataset:
From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: orf1 [Methanosarcina thermophila, TM-1, Genomic, 423 nt]
Date: 5 Nov 92 23:03:08 GMT
Distribution: bionet
Checksum: 58504 2

LOCUS       S110325       423 bp    DNA             NLM       22-OCT-1992
DEFINITION  orf1 [Methanosarcina thermophila, TM-1, Genomic, 423 nt]
ACCESSION   S41759 M83188
KEYWORDS    .
SOURCE      Methanosarcina thermophila TM-1
  ORGANISM  Methanosarcina thermophila
            Unclassified.
REFERENCE   1  (bases 1 to 423)
  AUTHORS   Clements,A.P. and Ferry,J.G.
  TITLE     Cloning, nucleotide sequence, and transcriptional analyses of the
            gene encoding a ferredoxin from Methanosarcina thermophila.
  JOURNAL   J. Bacteriol. 174, 5244-5250 (1992)
  STANDARD  full automatic
COMMENT     This entry incorporates information provided by the National
            Library of Medicine's GenInfo Backbone as NCBI gibbsq 110325.
            This sequence comes from Fig. 3b.  The authors begin their
            numbering at -154.  Zero is not present in the numbering.
FEATURES             Location/Qualifiers
     CDS             155..331
                     /note="Description: orf1;  For the protein sequence (NCBI
                     gibbsq 110326):  This sequence comes from Fig. 3b."
                     /product="2[4Fe-4S] bacterial-type ferredoxin"
                     /codon_start=1
                     /translation="MVAKVNVDLCTGCGSCVDECPAAAISLNDDGIATVDESECLDCG
                     SCEDACPNNAITIE"
BASE COUNT      122 a     84 c     85 g    132 t
ORIGIN      
        1 gtacctattc agcttatcct ttatctcttt ttttctttgt ttcaaaggag aaaagcgata
       61 gctttttatt aagttcgtgt atcctattag gcaacctaat ttatattttc aaatatataa
      121 agatctctta ctaaaaagat caggagtgaa aaacatggta gcaaaagtta atgtcgacct
      181 ctgtactggc tgtggaagct gtgtagacga atgccctgcc gctgcaattt ccctcaacga
      241 tgatggtatt gcaacagtag atgaaagtga atgccttgat tgcggctcat gcgaggacgc
      301 ctgccccaac aatgcaatca caattgagta acgtttttta agtacgattt aagcgcgtct
      361 ttaaaaaaga tctgagaagc ggagtgttcc tgctccgcct cgaaggtttc tcatccagaa
      421 ttc
//
From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Human myosin light chain 3 non-muscle (MLC3nm) mRNA, complete cds.
Date: 6 Nov 92 18:07:29 GMT
Distribution: bionet
Checksum: 35000 3

LOCUS       HUMMLC3NM     706 bp ss-mRNA            PRI       28-OCT-1992
DEFINITION  Human myosin light chain 3 non-muscle (MLC3nm) mRNA, complete cds.
ACCESSION   M31212
KEYWORDS    alkali myosin light chain; contractile protein;
            non-muscle myosin light chain 3; structural protein.
SOURCE      Human adult transformed fibroblast, cDNA to mRNA, clone MLC3nm.
  ORGANISM  Homo sapiens
            Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
            Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
REFERENCE   1  (bases 1 to 706)
  AUTHORS   Hailstones,D.L. and Gunning,P.W.
  TITLE     Characterization of human myosin light chains 1sa and 3nm:
            Implications for isoform evolution and function
  JOURNAL   Mol. Cell. Biol. 10, 1095-1104 (1990)
  STANDARD  full automatic
COMMENT     Draft entry and computer-readable sequence for [1] kindly submitted
            by D.L.Hailstones, 11-JAN-1990.
               The smooth muscle myosin light chain 3 is generated by an
            alternative splicing event.  Its amino acid boundaries are from bp
            41 to 467 and 514 to 542.
FEATURES             Location/Qualifiers
     mRNA            1..706
                     /note="MLC3nm mRNA"
     CDS             41..496
                     /gene="MYL3"
                     /product="myosin light chain 3"
                     /codon_start=1
                     /translation="MCDFTEDQTAEFKEAFQLFDRTGDGKILYSQCGDVMRALGQNPT
                     DAEVLKVLGNPKSDEMNVKVLDFEHFLPMLQTVAKNKDQGTYEDYVEGLRVFDKEGNG
                     TVMGAEIRHVLVTLGEKMTEEEVEMLVAGHEDSNGCINYEAFVRHILSG"
BASE COUNT      165 a    163 c    213 g    165 t
ORIGIN      
        1 attactgcag gaaaaggtcc cggagagctg agcagtcaag atgtgtgact tcaccgaaga
       61 ccagaccgca gagttcaagg aggccttcca gctgtttgac cgaacaggtg atggcaagat
      121 cctgtacagc cagtgtgggg atgtgatgag ggccctgggc cagaacccta ccgacgccga
      181 ggtgctcaag gtcctgggga accccaagag tgatgagatg aatgtgaagg tgctggactt
      241 tgagcacttt ctgcccatgc tgcagacagt ggccaagaac aaggaccagg gcacctatga
      301 ggattatgtc gaaggacttc gggtgtttga caaggaagga aatggcaccg tcatgggtgc
      361 tgaaatccgg catgttcttg tcacactggg tgagaagatg acagaggaag aagtagagat
      421 gctggtggca gggcatgagg acagcaatgg ttgtatcaac tatgaagcgt ttgtgaggca
      481 tatcctgtcg gggtgacggg cccgatgggg cggagctcgt ccgcatggtg ctgaatggct
      541 gaggaccttc ccagtctccc cagagtccgt gcctttccct gtgtgaattt tgtatctagc
      601 ctaaagtttc cctaggcttt cttgtctcag caactttccc atcttgtctc tcttggatga
      661 tgtttgccgt cagcattcac caaaataaac ttgctctctg ggcctc
//
From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Streptomyces goshikiensis 23S rRNA gene insertion sequence.
Date: 6 Nov 92 18:35:49 GMT
Distribution: bionet
Checksum: 57143 2

LOCUS       STM23RRNAC    107 bp ds-DNA             BCT       02-NOV-1992
DEFINITION  Streptomyces goshikiensis 23S rRNA gene insertion sequence.
ACCESSION   M85136
KEYWORDS    23S ribosomal RNA; insertion.
SOURCE      Streptomyces goshikiensis (library: ATCC 23914) DNA.
  ORGANISM  Streptomyces goshikiensis
            Prokaryotae; Firmicutes; Streptomycetaceae.
REFERENCE   1  (bases 1 to 107)
  AUTHORS   Roller,C., Ludwig,W. and Schleifer,K.H.
  TITLE     Gram-positive bacteria with a high DNA G+C content are
            characterized by a common insertion within their 23S rRNA genes
  JOURNAL   J. Gen. Microbiol. 138, 1167-1175 (1992)
  STANDARD  full automatic
FEATURES             Location/Qualifiers
     rRNA            1..107
                     /standard_name="23S rRNA insertion"
                     /note="this span absent in E. coli; located between
                     helices 54 and 55"
                     /product="23S ribosomal RNA"
BASE COUNT       28 a     25 c     34 g     20 t
ORIGIN      
        1 cgcccaatat cgaatcaggc gatgctaagt ccgtgaagcc gttccggacc cttcggggaa
       61 tggaaagtgg tggagccgac gaaccagact tgtagtaggt aagcgat
//
From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Human MHC HLA-DQ-alpha-1 gene (DR7,DB1), 5' flanking region.
Date: 5 Nov 92 23:10:07 GMT
Distribution: bionet
Checksum: 41857 3

LOCUS       HUMMHDQAWD    698 bp ds-DNA             PRI       20-OCT-1992
DEFINITION  Human MHC HLA-DQ-alpha-1 gene (DR7,DB1), 5' flanking region.
ACCESSION   M97457
KEYWORDS    Alu repeat; cell surface glycoprotein; class II gene;
            integral membrane protein; major histocompatibility complex;
            promoter region.
SOURCE      Homo sapiens DNA.
  ORGANISM  Homo sapiens
            Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
            Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
REFERENCE   1  (bases 1 to 698)
  AUTHORS   Morzycka-Wroblewska,E., Harwood,J., Smith,J.R. and Kagnoff,M.F.
  TITLE     Structure and evolution of the promoter regions of the DQA genes
  JOURNAL   Immunogenetics (1992) In press
  STANDARD  full automatic
FEATURES             Location/Qualifiers
     repeat_unit     42..357
                     /rpt_family="Alu"
                     /rpt_type=dispersed
                     /gene="HLA-DQA1"
                     /note="putative"
                     /citation=[1]
     misc_signal     531..544
                     /standard_name="X box"
                     /gene="HLA-DQA1"
                     /note="putative"
                     /citation=[1]
     misc_feature    564..573
                     /standard_name="Y box"
                     /gene="HLA-DQA1"
                     /note="putative"
                     /citation=[1]
     CDS             688..>698
                     /note="putative"
                     /citation=[1]
                     /gene="HLA-DQA1"
                     /product="MHC cell surface glycoprotein"
                     /codon_start=1
                     /translation="MIL"
BASE COUNT      200 a    170 c    173 g    155 t
ORIGIN      
        1 acctcatcta tccatgaggc tgctcagaaa tgcccacccc tggccaggcg cggtggctca
       61 tgcctgtaat ccaagcactt tgggaggctg aggcaggcag atcacgaggt caggagttca
      121 agaccagcgt ggccaacata gtgaaactct gtctctacta aaaatacaga aattagccgg
      181 gcatggtggc agcagcctgc agtcccagct acttgggagg gtgaggcagg agaatcgctt
      241 gaacccggga ggcaaaggtt gcagtgagcc gagaccttgc cattgtacct cagcctgggt
      301 gacagagtga gactacgtct caaaaataaa gaaaaagaaa agaaaagaaa aaaaaagaaa
      361 aattcccatc ccttttgcga ctggcagaca tgcacacacc agagaagatt ccaatttagt
      421 gtcctccctc tcttcataga acaattcctc aagtccactc tgagtagagg ctggatcaca
      481 acaaggggat tgccctgtct ccttccaggg ctcttaatag aaactcttca actagtaact
      541 gagatgtcac catggggatt tttctaattg gccaaaacct gacctggcag ggtttggttt
      601 gggtgtcttc agatttcctt gtcttgaggt cctcacaata gctctacagc tcagaacagc
      661 aactgctgag gctgccttgg gaagaagatg atcctaaa
//
From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Oxytricha trifallax JRB510 micronuclear transposon TBE1-tri mixture
Date: 6 Nov 92 18:33:06 GMT
Distribution: bionet
Checksum: 28604 2

LOCUS       OFACJTBEF      60 bp ds-DNA             INV       02-NOV-1992
DEFINITION  Oxytricha trifallax JRB510 micronuclear transposon TBE1-tri mixture
            of flanking sequence DNA.
ACCESSION   L02850
KEYWORDS    target duplication; transposon; transposon TBE1.
SOURCE      Oxytricha trifallax DNA.
  ORGANISM  Oxytricha trifallax
            Eukaryota; Animalia; Protozoa; Ciliophora; Polyhymenophora;
            Spirotricha; Hypotrichida; Sporadotrichina; Oxytrichidae.
REFERENCE   1  (bases 1 to 60)
  AUTHORS   Williams,K., Doak,T.G. and Herrick,G.
  TITLE     Precise excision of Oxytricha trifallax telomere-bearing elements
            as circles closed by a copy of the flanking target duplication
  JOURNAL   Unpublished (1992)
  STANDARD  full automatic
FEATURES             Location/Qualifiers
     repeat_region   <1..48
                     /rpt_type=other
                     /note="Mixture of 9 and 10-adjacent end inverted terminal
                     repeats of TBE1-tri elements"
     misc_feature    49..>60
                     /note="Mixture of TBE1-tri flanking sequences"
BASE COUNT       15 a      7 c      9 g     17 t     12 others
ORIGIN      
        1 tacaaatcaa ngcacttata aacctcatta aggggttttg gggttttnar tsvhmywkmw
//
From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: kit ligand=growth factor {alternatively spliced} [human, tumor cell
Date: 6 Nov 92 18:08:40 GMT
Distribution: bionet
Checksum: 60272 2

LOCUS       S110871       162 bp    mRNA            NLM       28-OCT-1992
DEFINITION  kit ligand=growth factor {alternatively spliced} [human, tumor cell
            lines, mRNA Partial, 162 nt]
ACCESSION   S42571
KEYWORDS    .
SOURCE      human tumor cell lines
  ORGANISM  Unclassified.
            Unclassified.
REFERENCE   1  (bases 1 to 162)
  AUTHORS   Toyota,M., Hinoda,Y., Itoh,F., Tsujisaki,M., Imai,K. and Yachi,A.
  TITLE     Expression of two types of kit ligand mRNAs in human tumor cells.
  JOURNAL   International Journal of Hematology 55, 301-304 (1992)
  STANDARD  full automatic
COMMENT     This entry incorporates information provided by the National
            Library of Medicine's GenInfo Backbone as NCBI gibbsq 110871.
            This sequence comes from Fig. 2.  The authors begin their numbering
            at 682.
FEATURES             Location/Qualifiers
     CDS             1..162
                     /partial
                     /note="mismatch(8[R->G]).  KL;  growth factor;  For the
                     protein sequence (NCBI gibbsq 110872):  This sequence
                     comes from Fig. 2.  The authors begin their numbering at
                     142.
                     Author-given protein sequence is in conflict with the
                     conceptual translation"
                     /product="kit ligand"
                     /codon_start=1
                     /translation="STLSPEKRKAKNPPGDSSLHWAAMALPALFSLIIGFAFGALYWK
                     KRQPSLTRAV"
BASE COUNT       45 a     38 c     38 g     41 t
ORIGIN      
        1 tcaacattaa gtcctgagaa agggaaggcc aaaaatcccc ctggagactc cagcctacac
       61 tgggcagcca tggcattgcc agcattgttt tctcttataa ttggctttgc ttttggagcc
      121 ttatactgga agaagagaca gccaagtctt acaagggcag tt
//
From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Parvovirus (donor P2) partial ORF.
Date: 6 Nov 92 18:34:20 GMT
Distribution: bionet
Checksum: 37928 2

LOCUS       PVBORFH       170 bp ds-DNA             VRL       02-NOV-1992
DEFINITION  Parvovirus (donor P2) partial ORF.
ACCESSION   L05206
KEYWORDS    .
SOURCE      Parvovirus B19 DNA.
  ORGANISM  Parvovirus B19
            Viridae; ss-DNA nonenveloped viruses; Parvoviridae; Parvovirus.
REFERENCE   1  (sites)
  AUTHORS   Shade,R.O., Blundell,M.C., Cotmore,S.F., Tattersall,P. and
            Astell,C.R.
  TITLE     Nucleotide sequence and genome organization of human parvovirus B19
            isolated from the serum of a child during aplastic crisis
  JOURNAL   J. Virol. 58, 921-936 (1986)
  STANDARD  full automatic
REFERENCE   2  (bases 1 to 170)
  AUTHORS   McOmish,F., Yap,P.L., Jordan,A., Hart,H., Cohen,B.J. and
            Simmonds,P.
  TITLE     Detection of parvovirus B19 in blood donations: A model system for
            screening by polymerase chain reaction
  JOURNAL   J. Clin. Microbiol. (1992) In press
  STANDARD  full automatic
COMMENT     Nucleotide  1 of reference [2] corresponds to nucleotide 1415 of
            reference [1].
FEATURES             Location/Qualifiers
     CDS             <1..>170
                     /note="ORF"
                     /codon_start=3
                     /translation="GPPSTGKTNLAMAIAKSVPVYGMVNWNNENFPFNDVAGKSLVVW
                     DEGIIKSTIVEA"
BASE COUNT       56 a     24 c     44 g     46 t
ORIGIN      
        1 atgggccgcc aagtacagga aaaacaaact tggcaatggc cattgctaaa agtgttccag
       61 tatatggcat ggttaactgg aataatgaga actttccatt taatgatgta gcagggaaaa
      121 gcttggtggt ctgggatgaa ggtattatta agtctacaat tgtagaagct
//
From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Human cytochrome P-450(SCC), cholesterol desmolase, 1st exon and
Date: 6 Nov 92 18:07:36 GMT
Distribution: bionet
Checksum: 14197 3

LOCUS       HUMP45SC1    1011 bp ds-DNA             PRI       28-OCT-1992
DEFINITION  Human cytochrome P-450(SCC), cholesterol desmolase, 1st exon and
            flanking region.
ACCESSION   D00161 X05367
KEYWORDS    cholesterol desmolase; cytochrome; cytochrome P-450;
            cytochrome P-450(SCC); cytochrome P-450-scc.
SEGMENT     1 of 2
SOURCE      Human placenta genomic DNA, clone lambda-hSCCE2-33-2.
  ORGANISM  Homo sapiens
            Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
            Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
REFERENCE   1  (bases 1 to 1011)
  AUTHORS   Morohashi,K., Sogawa,K., Omura,T. and Fujii-Kuriyama,Y.
  TITLE     Gene Structure of Human Cytochrome P-450(SCC), Cholesterol
            Desmolase
  JOURNAL   J. Biochem. 101, 879-887 (1987)
  STANDARD  full automatic
COMMENT     A CATT sequence and a TATAAT sequence, which are possibly a 'CAT'
            box, and a 'TATA' box, respectively, are present 129 and 91 bp
            upstream from the initiation codon.  The mature form of human
            P-450(SCC) has only one cystein residue, which was located in the
            center of the HR2 region.  corresponds to DDBJ (rel3.0) entry
            <HUMP45SC1>(D00161) dated 28-MAR-1988.
FEATURES             Location/Qualifiers
     exon            <677..945
                     /number=1
                     /note="P-450(SCC) peptide"
                     /gene="CYP11A"
     intron          946..>1010
                     /note="P-450 intron A"
BASE COUNT      245 a    258 c    293 g    215 t
ORIGIN      PvuII site.
        1 ctgtactgaa ttacagcccc aaatctgggt caactgggga gagacgacga ggattagggt
       61 tccaaggtga aactgtgcca ttgcgctcca gcctgggcaa caagaatgaa actctcttaa
      121 aataaaataa aataaaataa aataaaatag cctaaggatg catttctcag aacttatccc
      181 tgttgttcaa tgatgtgtgt ctatacagtg gggccataac taagacgtat gttgcccaag
      241 ctggcaagat agctctgacc ttctcttggg cccctcattt cccccaaaca caggttgtct
      301 gcagtcttga ccaatggctg ccagggcatg gactccgctg caggggccag tgggaggccc
      361 cagctcaggc aaaagcacag gcagatattt caggagtctg ctagggctgg cactgagggc
      421 agagacagag gggtctccct gtcctttgga gaacctcacg ctgcagaaat tccagactga
      481 accttgatac cgagtagggg aggagctgtc tgcgggtttg agcctgcagc aggaggaagg
      541 acgtgaacat tttatcagct tctggtatgg ccttgagctg gtagttataa tcttggccct
      601 ggtggcccag ggctacagtc atcctagcag tccccgctga agtggagcag gtacagtcac
      661 agctgtgggg acagcaatgc tggccaaggg tcttccccca cgctcagtcc tggtcaaagg
      721 ctgccagacc tttctgagtg cccccaggga ggggctgggg cgtctcaggg tgcccactgg
      781 cgagggagct ggcatctcca cccgcagtcc tcgccccttc aatgagatcc cctctcctgg
      841 tgacaatggc tggctaaacc tgtaccattt ctggagggag acgggcacac acaaagtcca
      901 ccttcaccat gtccagaatt tccagaagta tggcccgatt tacaggtaag cctggcagag
      961 ggtgggagcc gaaggacagg gaggaggagg ggactgggta gccctgctgt a
//
From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Schistosoma bovis 5.8S ribosomal RNA gene, and 28S ribosomal RNA,
Date: 6 Nov 92 18:35:00 GMT
Distribution: bionet
Checksum: 24206 2

LOCUS       SCMRNA        397 bp ds-DNA             INV       02-NOV-1992
DEFINITION  Schistosoma bovis 5.8S ribosomal RNA gene, and 28S ribosomal RNA,
            3' end and internal transcribed spacer.
ACCESSION   L03657
KEYWORDS    28S ribosomal RNA; 5.8S ribosomal RNA.
SOURCE      Schistosoma bovis (individual_isolate Niger, strain bo-NIG-1) DNA;
            and Unclassified. adult DNA.
  ORGANISM  Schistosoma bovis
            Eukaryota; Animalia; Eumetazoa; Platyhelminthes; Trematoda;
            Digenea; Strigeidida; Strigeata; Schistosomatoidea;
            Schistosomatidae.
REFERENCE   1  (bases 1 to 397)
  AUTHORS   Despres,L., Imbert-Establet,D., Combes,C. and Bonhomme,F.
  TITLE     Molecular evidence linking hominid evolution to recent radiation of
            schistosomes (Platyhelminthes, Trematoda)
  JOURNAL   Unpublished (1992)
  STANDARD  full automatic
FEATURES             Location/Qualifiers
     rRNA            complement(<1..77)
                     /product="5.8S ribosomal RNA"
                     /gene="5.8S rRNA"
     misc_RNA        complement(77..392)
                     /note="internal transcribed spacer"
     rRNA            complement(392..>397)
                     /product="28S ribosomal RNA"
                     /gene="28S rRNA"
BASE COUNT       78 a     95 c    111 g    113 t
ORIGIN      
        1 actgctttga acatcgacat cttgaacgca tattgcggct acgggatatc ctgtggccac
       61 gctgtccgag ggtcggcttt tcatctatca cggcgcacat tgagtcgtgg attgggcgag
      121 tgctgccggc gtgtataccc gcatatcaac gcgggttgct ggtcaaaggc tccgtcctaa
      181 tagtcgccac agcctagtcc ggtctagatg acttgattga gatgctgcgg tgggttgtgc
      241 tcgagtcgtg gcttaatgac attatacacg ctcgggaaga atcgcaccta tcgtacgcta
      301 cgttggtcac ttgatcttgt ctctatggtt cggtctatgg tttgtaccga tggtgtgtgt
      361 aatacgcacg aattgtataa ttgaccctga cctcgga
//
From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Human immunodeficiency virus type 1 (10135.b.13) RNA.
Date: 5 Nov 92 23:06:07 GMT
Distribution: bionet
Checksum: 64520 1

LOCUS       HIV135B13X     56 bp ss-RNA             VRL       22-SEP-1992
DEFINITION  Human immunodeficiency virus type 1 (10135.b.13) RNA.
ACCESSION   L03478
KEYWORDS    .
SOURCE      Human immunodeficiency virus type 1 RNA.
  ORGANISM  Human immunodeficiency virus type 1
            Viridae; ss-RNA enveloped viruses; Positive strand RNA virus;
            Retroviridae; Lentivirinae.
REFERENCE   1  (bases 1 to 56)
  AUTHORS   McNearney,T., Hornickova,Z., Markham,R., Birdwell,A., Arens,M.,
            Saah,A. and Ratner,L.
  TITLE     Relationship of human immunodeficiency virus type 1 sequence
            heterogeneity to stage of disease
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. (1992) In press
  STANDARD  full automatic
BASE COUNT       22 a      7 c     12 g     15 t
ORIGIN      
        1 ctgttaaatg gcagtctagc agaagaagaa gtagtaatta gatctgaaaa tttcac
//
From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Cellulomonas gelida 23S rRNA gene insertion sequence.
Date: 6 Nov 92 18:26:47 GMT
Distribution: bionet
Checksum: 21418 2

LOCUS       CFI23RRNAE    115 bp ds-DNA             BCT       02-NOV-1992
DEFINITION  Cellulomonas gelida 23S rRNA gene insertion sequence.
ACCESSION   M85105
KEYWORDS    23S ribosomal RNA; insertion.
SOURCE      Cellulomonas gelida (library: DSM 20110) DNA.
  ORGANISM  Cellulomonas gelida
            Prokaryotae; Firmicutes; Irregular asporogenous rods.
REFERENCE   1  (bases 1 to 115)
  AUTHORS   Roller,C., Ludwig,W. and Schleifer,K.H.
  TITLE     Gram-positive bacteria with a high DNA G+C content are
            characterized by a common insertion within their 23S rRNA genes
  JOURNAL   J. Gen. Microbiol. 138, 1167-1175 (1992)
  STANDARD  full automatic
FEATURES             Location/Qualifiers
     rRNA            1..115
                     /standard_name="23S rRNA insertion"
                     /note="this span absent in E. coli; located between
                     helices 54 and 55"
                     /product="23S ribosomal RNA"
BASE COUNT       25 a     40 c     35 g     15 t
ORIGIN      
        1 cgcccatacc gagcccggtg atgctaaccg tccgaaccga tgcaccgtgg ccttcgggcc
       61 gcaccgccac cggggagcac gggacccgaa ccggtagtag gtaagcgtat taaca
//
From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Eubacterium sp. (clone OSVS-5) 16S ribosomal RNA, partial sequence.
Date: 6 Nov 92 18:28:13 GMT
Distribution: bionet
Checksum: 30830 3

LOCUS       EUBRRDK       125 bp ss-rRNA            RNA       02-NOV-1992
DEFINITION  Eubacterium sp. (clone OSVS-5) 16S ribosomal RNA, partial sequence.
ACCESSION   L05930 L04712
KEYWORDS    16S ribosomal RNA.
SOURCE      Eubacterium sp. (strain Octopus Spring:OS Type N) (library: Octopus
            Spring V-Short) cDNA to rRNA.
  ORGANISM  Eubacterium sp.
            Prokaryotae; Eubacteria.
REFERENCE   1  (bases 1 to 125)
  AUTHORS   Ward,D.M., Bateson,M.M., Weller,R. and Ruff-Roberts,A.L.
  TITLE     Ribosomal RNA analysis of microorganisms as they occur in nature
  JOURNAL   Adv. Microb. Ecol. 12, 219-286 (1992)
  STANDARD  full automatic
REFERENCE   2  (sites)
  AUTHORS   Ward,D.M., Kopczynski,E.D., Heimbuch,B.K., Bateson,M.M. and
            Weller,R.
  TITLE     Uncultivated cyanobacteria, Chloroflexus-like and Spirochete-like
            inhabitants of a hot spring microbial mat
  JOURNAL   Appl. Environ. Microbiol. (1992) In press
  STANDARD  full automatic
COMMENT     L04712 originally linked into paper.  Sequence contained approx.
            30% ambiguous bases, the majority of which spanned 126 to 214. This
            portion of the sequence was deleted, the remainder being broken up
            into two segments, L05930 and L05931.
FEATURES             Location/Qualifiers
     rRNA            <1..>125
                     /note="aligns with Escherichia coli 16S rRNA from base
                     pair 937 to 1062"
                     /citation=[2]
                     /citation=[1]
     unsure          replace(56..58,"ta")
                     /note="base may or may not be present"
                     /citation=[2]
                     /citation=[1]
     unsure          replace(106..108,"ga")
                     /note="base may or may not be present"
                     /citation=[2]
                     /citation=[1]
BASE COUNT       32 a     29 c     39 g     24 t      1 others
ORIGIN      
        1 aagcggtgga tgatgtggtt taattcgatg caacgcgaaa aaccttacct acccttgaca
       61 tgccaggaac cctgcagaga tgtgggggyg ctcgcaagag agcctggaca caggtgctgc
      121 atggc
//