From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Rotavirus sp. outer capsid protein (VP4) mRNA, complete cds.
Date: 29 Dec 92 19:51:21 GMT
Distribution: bionet
Checksum: 52280 6

LOCUS       RO1VP4A      2352 bp ss-mRNA            VRL       09-DEC-1992
DEFINITION  Rotavirus sp. outer capsid protein (VP4) mRNA, complete cds.
ACCESSION   L07657
KEYWORDS    outer capsid protein VP4.
SOURCE      Rotavirus sp. (strain I321) cDNA to mRNA.
  ORGANISM  Rotavirus sp.
            Viridae; ds-RNA nonenveloped viruses; Reoviridae; Rotavirus.
REFERENCE   1  (bases 1 to 2352)
  AUTHORS   Das,M., Dunn,S.J., Woode,G.N., Greenberg,H.B. and Rao,C.
  TITLE     Both surface proteins (VP4 and VP7) of an asymptomatic neonatal
            rotavirus strain (I321) have high levels of sequence identity with
            the homologous proteins of a serotype 10 bovine rotavirus
  JOURNAL   Unpublished (1993)
  STANDARD  full automatic
FEATURES             Location/Qualifiers
     misc_feature    1..15
                     /citation=[1]
                     /note="PCR-related features: primer and STS
                     GGCTATAAAATGGCT; putative"
     misc_feature    complement(2341..2352)
                     /citation=[1]
                     /note="PCR-related feature: Primer and STS GGTCACATCCTC;
                     putative"
     CDS             10..2328
                     /gene="VP4"
                     /citation=[1]
                     /product="outer capsid protein"
                     /codon_start=1
                     /translation="MASLIYRQLLYNSYSVDLSDEITNIGAEKKENVTVQLGEFAQSQ
                     YAPVSWGSGEILSGNVEEQALDGPYTPDSSNLPSNYWYLINPSNDGVVFSVTDNSTFW
                     MFTYLVLPNTAQTNVTVNVMNETVNISIDNPSSTYRFVDYFKTSSTQSYRQRNYLITE
                     HRLQAYKRDESGNISNYWGSSTYGDLRVGTYFNPVLNAVINLNADFYVIPDSQQEICT
                     EYIKGGLPAMQTTTYVTPISYAIRSQEIARPNEDIIISKASLWKEVQCNRDIVIRFVF
                     ANNIIKAGGLGYKWSEISYKANNYQYTYMRDGVEVVAHTTVSVNGVSVYNYNTGSLPT
                     DFTIRNYDVLKESSFVYVDYWDDSQAFRNMVYVRSLSAELNQVRCVGGNYSFALPVGS
                     WPVMQGGSVILTFDGVTLSTQFTDYVSLNSLRFRFRCAVSEPPFRVTGTRISNLYGLP
                     AANPMGDQQHYEASGRFSLISLVPSNDDYQTPIANSVTVRQDLERQLDEMRREFNELS
                     ANIALSQLIDLALLPLDMFSMFSGIRSTVEAAKTSPTSVMKKFRKSNLAKSVNSLTDA
                     ITDAAGSISRSSTLRSVSSAASVWTDISDIVDSTDDVVTATATAAAKKFRVKEFTTEF
                     SGVSFDDISAAVVKTKMNKLNAVDEEILPQIITEASEKFIPNRAYRLIDGEKVYEVTT
                     EGKYFAYLTETFEEVVFDAERFTELVTDSPVISAIIDFKTIKNLNDNYGVTREQALNM
                     LRSDPKVLRSFINQNNPIIKNRIEQLILQCRI"
BASE COUNT      796 a    359 c    526 g    671 t
ORIGIN      
        1 ggctataaaa tggcttctct aatatacaga cagctacttt ataactcata ttcagtagat
       61 ttatcagatg aaataactaa tataggtgca gaaaagaaag agaatgtgac tgtgcagctt
      121 ggtgaattcg ctcaaagtca atacgcacca gtttcatggg gatcaggaga gatattaagt
      181 ggaaatgttg aagaacaggc tttagatggg ccatatacac cagatagctc gaacttaccg
      241 tctaactatt ggtatttaat caatccatca aatgatggtg tggtgttctc agtaacggat
      301 aacagcacat tctggatgtt tacttattta gtcttaccaa atacagctca aactaatgtc
      361 acagtaaatg tgatgaatga gacagtgaat atatcaatag acaatccgag ctcgacatac
      421 aggtttgtgg attactttaa gactagttcc acgcaatcgt ataggcagag gaactatctg
      481 attactgaac atagattaca agcttacaaa agagatgaaa gtggaaatat atcaaattat
      541 tggggttcgt ctacatatgg tgatttgaga gttggaacgt attttaatcc ggtactcaat
      601 gcagtgatca acctaaatgc agatttctac gtcataccag attcacaaca agagatatgc
      661 acagaataca taaagggagg attgccggct atgcagacta caacttatgt gacaccaatt
      721 agttatgcta ttaggagtca agaaattgcg agaccgaatg aagacataat catatcaaag
      781 gcatcactgt ggaaagaggt tcaatgtaat agagacattg tgataagatt tgtgtttgca
      841 aataatataa tcaaagcagg tggacttggt tataaatggt cagagatatc atataaagct
      901 aataattacc aatatacata tatgagagat ggcgtggaag ttgttgctca tactactgtt
      961 tcagtgaacg gtgttagcgt gtataattat aacactggat cgttaccaac tgatttcacg
     1021 atacgaaatt atgatgtttt aaaagaaagt tcgttcgtat atgttgatta ttgggacgat
     1081 tcacaggctt tcagaaatat ggtatatgtg agatcgctga gtgcggaact aaatcaagtg
     1141 cggtgcgtag gaggtaatta ttcgttcgcg ttgcccgttg gctcatggcc ggtgatgcaa
     1201 ggagggagtg tgattctaac atttgatggt gtaacgttat caacgcaatt tactgactat
     1261 gtgtcgttga actcactaag gttcagattt agatgtgcag tgagcgaacc tccgtttagg
     1321 gttactggta ctagaatatc gaatttgtat ggccttccag ccgctaatcc aatgggagat
     1381 caacaacatt atgaggcatc aggtaggttt tcattgatat cgttagtgcc aagtaatgat
     1441 gactaccaga ctccaattgc aaattcagtc actgtaagac aggatctaga aagacaactg
     1501 gatgaaatga gaagagaatt caatgaacta tcagctaata tagctttgtc acagctaata
     1561 gatttagcat tattaccact tgatatgttt tcaatgttca gtggaatacg aagtaccgtt
     1621 gaagcagcaa aaacttcgcc gacatcagtg atgaagaaat ttagaaagtc gaatttggca
     1681 aaaagtgtta atagtttgac tgatgccata actgatgccg ctggttcaat ttctaggtca
     1741 tcaacactac gatcggtcag cagcgcggct tcagtatgga cggatataag tgacatagta
     1801 gattcaacag atgatgttgt gacagctaca gcaacagctg ctgcgaagaa gtttagagtt
     1861 aaagagttca caacggaatt tagtggtgtt agttttgatg atatatctgc tgcggttgta
     1921 aaaacgaaaa tgaacaaatt gaatgctgtg gatgaggaaa tactaccaca aataataact
     1981 gaggcatcgg agaagtttat accgaatcgt gcatatagat taatagatgg agagaaggta
     2041 tacgaggtta caacggaagg gaagtatttt gcttatctga cagaaacatt cgaagaagtg
     2101 gtttttgatg cagagagatt tactgaatta gttactgatt cgccagtaat atcagcaatt
     2161 atagacttta aaacgataaa gaatctaaat gataattatg gtgttacgag ggagcaagcg
     2221 ttgaatatgt tacgttcgga tccgaaagta ttaagaagct ttattaacca aaacaatcct
     2281 ataattaaaa acagaataga gcaactaata ttgcagtgta ggatatagag ctgtttgtat
     2341 gaggatgtga cc
//