From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Caenorhabditis elegans collagen gene.
Date: 31 Dec 92 01:43:40 GMT
Distribution: bionet
Checksum: 39395 5

LOCUS       CELCOL       2232 bp ds-DNA             INV       18-DEC-1992
DEFINITION  Caenorhabditis elegans collagen gene.
ACCESSION   M80650
KEYWORDS    collagen.
SOURCE      Caenorhabditis elegans (strain N2) DNA.
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
            Rhabditina; Rhabditoidea; Rhabditidae.
REFERENCE   1  (sites)
  AUTHORS   Cox,G.N., Fields,C.A., Kramer,J.M., Rosenzweig,B. and Hirsh,D.
  TITLE     sequence comparisons of developmentally regulated collagen genes of
            caenorhabditis elegans
  JOURNAL   Gene 76, 331-344 (1989)
  STANDARD  full automatic
REFERENCE   2  (bases 1 to 2232)
  AUTHORS   Bird,D.M.
  TITLE     Sequence comparison of the Caenorhabditis elegans dpy-13 and col-34
            genes, and their deduced collagen products
  JOURNAL   Gene 120, 261-266 (1992)
  STANDARD  full automatic
FEATURES             Location/Qualifiers
     repeat_region   381..393
     TATA_signal     533..539
                     /gene="alpha-collagen"
     intron          666..719
                     /number=1
                     /gene="alpha-collagen"
     exon            720..1362
                     /number=2
                     /gene="alpha-collagen"
                     /label=exon2
     intron          1363..1410
                     /number=2
                     /gene="alpha-collagen"
     polyA_signal    1603..1608
                     /gene="alpha-collagen"
     CDS             join(585..665,720..1362,1411..1583)
                     /gene="alpha-collagen"
                     /product="alpha-collagen"
                     /codon_start=1
                     /translation="MDLETRIKAYRFVAYSAVAFSVVAVISVCVTLPMVYNYVHHVKR
                     TMHNEITFCKGSAKDIWNEVHALKSLPNSNRTARQAYNDAAVTGGGAQSGSCESCCLP
                     GPPGPAGTPGKPGRPGKPGAPGLPGNPGRPPQQPCEPITPPPWKPCPQGPPGPPGPPG
                     PPGDSGEPGSPGLPGQDAAPGEPGPKGPKGPPGAPGAPEHQESQECPRGEPLIPGEPG
                     PPGEAGPQGPPGSPGQPGADGSPGQPGPKGPNGPDGQPGADGNPGAPGPAGPPGSPGE
                     RGICPKYCAIDGGVFFEDGTRR"
BASE COUNT      639 a    551 c    534 g    508 t
ORIGIN      
        1 gctgctcaat tctgaaccta cgagtcttgc tgtcttccag gcccaactgg accagcggga
       61 acgccggagc gacttcctgg caaaacctcg ttcataacga cctccagaat cacaaggaga
      121 tcgagccaag accactagca tcatcagaag ctccaggaga acctgcaaca ccagaagatt
      181 ctgattctgg agagccaaga tcacaagaca tgtaaagtac atccgttaca tcatctttat
      241 ttcaattggc ttcccgcagt agaatcgacg aaacttcaaa taacgtcgcc gataatctat
      301 accgcttccc atggatttat gataatcaaa caagaagggg aacctgtctc tggtaagaag
      361 catccgagaa gtacaatctc atctttctct aatcaccacc gcagttttct ccggcttaaa
      421 ttgcccaatt ccaatgcctc atctcattga atatacaact gtcgtcggag gggggagcga
      481 cagcaacgaa gaaagtttcg aagcaagtgg gcgggaggcg tgtagtaggt actataaata
      541 ggcgagacga cagaacactt cacaccaaac caccactgca tacaatggat ttggagacac
      601 gcatcaaggc gtatcgtttc gttgcctact cggcagtcgc tttttcggtg gttgccgtga
      661 tttcggtgag ttttttcttg aatttttcaa aaaatttccc taaatcccca tggttctagg
      721 tatgtgtgac cctaccaatg gtctacaact acgtgcacca tgtcaagaga accatgcaca
      781 acgagatcac attctgcaag ggttccgcca aggacatttg gaatgaagtt catgctttga
      841 aatctcttcc aaacagcaac cgtaccgccc gtcaagctta caatgatgcc gccgttaccg
      901 gaggtggtgc tcagtccgga tcctgcgagt cttgctgtct tccaggacca ccaggtccag
      961 ctggaacgcc tggaaagcct ggacgcccag gtaagcctgg agcaccggga cttcctggaa
     1021 acccgggacg cccaccacag cagccatgcg agccgattac cccaccacca tggaagccgt
     1081 gcccacaagg accaccagga ccaccaggac cacctgggcc accaggagat tctggagagc
     1141 caggatcacc aggacttccg ggacaagacg ctgcaccagg agagccggga ccaaagggac
     1201 caaagggacc acctggagct ccaggagcac ctgaacacca ggagagccag gagtgcccga
     1261 gaggcgaacc actcatccca ggagagccag gaccaccagg agaggccgga ccgcaaggac
     1321 caccaggatc cccaggacaa ccaggagccg acggatcacc aggtaagaaa agatgttata
     1381 ggtgacctat ttttaaaact tgtctttcag gacaacccgg accaaaggga ccaaatggac
     1441 cagatggtca gccaggagcc gatggaaacc ctggagcacc aggaccagcc ggaccaccag
     1501 gatccccagg agagcgtgga atctgtccaa aatactgtgc tatcgacgga ggagtcttct
     1561 tcgaagacgg aactcgtcgt taaaaagtgt tttgtgtcta aaaataaact tattcattag
     1621 caaaaactct tctataactt acaactggga tcgttcaggt ctaaaaattt cgctgttaaa
     1681 gcccagagtc tatagctttt aagctctgaa agctaaaaat ccaataatgt ccagctaaac
     1741 agattcactt aagcttcttc tctcctgacc aaaaagtatg cctctttgga atttcaagtg
     1801 ttttctaaaa gcactccctt gcctgccatc aaaagcccga tttggacatt tatacggaga
     1861 cggtgtcatc atccgtcttg cgtcgaaacc ggattgctgc gcaattattc cgggtatgaa
     1921 actagcaagg gagaaagttt gagaggagag aagaacgaaa aaaaagacgc gattgatgtt
     1981 gaatgtgaac ttggtgacag attattgcat gaacttggta gtttgtacgg ttgttgagtg
     2041 gttggggggg gggggggggt aagaaaaatt gcctagtttc tgtaattttt atgtaccagg
     2101 gatgctagaa ggttcttctt ggatgtttga ataaaattag ttgctttatt agtcgactag
     2161 tcgtaatttt atgatttttt gaaacttttc caaaacttac accggctttg caggctctgt
     2221 aaaagtttac tg
//