From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Orgyia pseudotsugata polyhedrosis virus HindIII M region.
Date: 5 Jan 93 06:48:26 GMT
Distribution: bionet
Checksum: 58331 11

LOCUS       NPOHIM       4200 bp ds-DNA             VRL       05-JAN-1993
DEFINITION  Orgyia pseudotsugata polyhedrosis virus HindIII M region.
ACCESSION   D13929 D00508
KEYWORDS    .
SOURCE      Orgyia pseudotsugata polyhedrosis virus DNA.
  ORGANISM  Orgyia pseudotsugata nuclear polyhedrosis virus
            Viridae; ds-DNA enveloped viruses; Baculoviridae; Baculovirus;
            Nuclear polyhedrosis viruses.
REFERENCE   1  (bases 1 to 4200)
  AUTHORS   Gombart,A.F., Blissard,G.W. and Rohrmann,G.F.
  TITLE     Characterization of the genomic organization of the HindIII M
            region of the multicapsid nuclear polyhedrosis virus of Orgyia
            pseudotsugata reveals major differences among baculoviruses
  JOURNAL   J. Gen. Virol. 70, 1815-1828 (1989)
  STANDARD  full automatic
FEATURES             Location/Qualifiers
     promoter        34..38
                     /note="putataive promoter element"
     promoter        622..626
                     /note="putative promoter element"
     misc_feature    624..625
                     /note="mRNA start site"
     misc_feature    753
                     /note="mRNA start site"
     misc_feature    772
                     /note="mRNA start site"
     misc_feature    874..875
                     /note="mRNA start site"
     misc_feature    948..949
                     /note="mRNA start site"
     promoter        949..953
                     /note="putative promoter element"
     misc_feature    953
                     /note="mRNA start site"
     misc_feature    957..958
                     /note="mRNA start site"
     misc_feature    1593
                     /note="mRNA start site"
     misc_feature    1614
                     /note="mRNA start site"
     misc_feature    1792..1793
                     /note="mRNA start site"
     promoter        1853..1857
                     /note="putative promoter element"
     misc_feature    1854..1855
                     /note="mRNA start site"
     promoter        2406..2410
                     /note="putataive promoter element"
     misc_feature    2583..2584
                     /note="mRNA start site"
     polyA_signal    3842..3847
     misc_feature    3900..3903
                     /note="mRNA termination site"
     CDS             51..628
                     /product="ORF1"
                     /codon_start=1
                     /translation="MANADSLDARAFSYAPDASFEVIIITNAPNDHDGYLELNAAARL
                     LAPFQKNISALWTSAAPSHKLVRNNKNYLHVFGLFKYLQNYNFNAKPHPPEYYTVKSV
                     ICDLIAGAQGKTFDPLCEIKTQLCAIQESLNEAIVTLNSHATAEPAPGAPCDARELVE
                     TLHSEYSQKLTFATDTILDNVKSIKDLVCLNK"
     CDS             641..952
                     /product="ORF2"
                     /codon_start=1
                     /translation="MNFWAAFSACLVGYLVYSGRLNGELQEIKSILIIAYEAADKRYR
                     GVIDEIESLKTDTFMMLSNLQNNTIRTWDAVAKNGKKIANLDERVNGLLAKHAVPALV
                     R"
     CDS             995..1888
                     /note="ORF3"
                     /product="ORF3"
                     /codon_start=1
                     /translation="MTPNNNVMFDDASVMWIDADYIYQNSKMPLSTFQQLLFSIPSKH
                     RKMINDIGNPACNPPSCSFPPSNSTVKYMVDIYGAAVLALRCPSLFSDQLLTTFTANN
                     YLSYCNRQRPCPQPPCPQPPFDCAQTQILDALEKLARQSDLVVNSLNQISLNQSNQFL
                     ELSNTLNTVRAQNAQILAALETTKDAILTRLNALVDDIKAALPDQSAQLQELADKLLD
                     AINSVAQTLRGEMNNTNSILTNLASSITNINSTLNNLLAAIEGIGGDGGGLGDADRQA
                     LNEVLSLVTEIRNILMGTARK"
     CDS             1890..2576
                     /product="ORF4"
                     /codon_start=1
                     /translation="MPRDTKPYSRPANAPRPGVKTERSNQFKAASTKYGKRVNDANKE
                     TRPVAFVDIKLNHRATPEMEQRMQAVYARQKPSIFNKSAVAEFIKNRTFVVAFAHPTY
                     TIQFNKIPTVDQLRVYCSNINKDLLFKDKNQQMRNALPNAASFRVQINDEPLFKVQTV
                     VYDKESAQLVLTIRFLPRQTMELLPMKKCVVYLNILSNASVDWAVPADLLRAFAKLAL
                     APPIPAPQNV"
     CDS             2591..3865
                     /product="ORF5"
                     /codon_start=1
                     /translation="MHAPLTAEQRDVYDKYKFATYARSVALTRAQLDQWRDNKVIVPE
                     PVSRAETLRVEAATRGQSKNALWNLLRLDRSTASRSSGGVALRSSALAFGNAQENRLK
                     LANGELFERLGRLAAERAGCPVAETVLDCGMFISAFGLHSASPDAYFAMADGSCVPVE
                     IKCPFNYRDTTVDQMRLELGKANRKYRVKHTALLVNKAGPAQFEVVKTHDHYRQMQRQ
                     MYVMRNAPVCFYVVRFKHNLVALAVPRDDDFCRKEAAAEGAAFVAFATENAGRVQFKR
                     GDRRRASFAQNAADHGYNAAQVDALVRRGLYLSYGQLRCGHCDAFALDGPRAFELAMA
                     RPHEQCDGLALQEHEFDNVAFLDFTKRYTSLVDKRCDDARALRVDGFYVDDAGAVKTF
                     CCGVHGSNASRRHLPTCSYYLAMGVNKIQNNM"
     CDS             4085..>4200
                     /product="P26"
                     /codon_start=1
                     /translation="MYIKMEVEFDEDTGALQIGGQEVFVMVFEPGQEVFDKS"
BASE COUNT     1006 a   1218 c   1160 g    816 t
ORIGIN      3 upstream of HincII site.
        1 gttaacaaaa cttaatactt tctccgccct aatgtaagac ggacattgac atggcgaacg
       61 ccgattcgct cgacgcccgc gcgttcagtt acgcccccga cgccagcttt gaagtgatta
      121 taatcacaaa cgcgcccaac gaccacgacg ggtatctgga gctgaacgcc gcggcacgct
      181 tgttggcgcc gtttcaaaaa aacatatccg ccctatggac aagcgcggcg ccgtcgcaca
      241 agcttgttag aaacaacaaa aactatctgc acgtttttgg gctgtttaaa tatttgcaaa
      301 actacaattt caacgctaaa ccgcacccgc ccgaatacta cactgtgaaa tcggtaattt
      361 gcgaccttat agcgggcgcg cagggcaaaa cgtttgaccc gctgtgtgag atcaagacgc
      421 aactgtgcgc cattcaagaa agcctgaacg aggcaatagt gacgttgaac agccacgcga
      481 ccgccgagcc cgcgcccggt gcgccttgcg acgcgcgcga gttggtcgaa acgctgcatt
      541 cggaatacag ccaaaagctg acgtttgcta ccgacaccat tctggacaac gtgaaaagca
      601 tcaaggacct ggtgtgcctc aataagtgaa aattttagcc atgaattttt gggcggcttt
      661 tagcgcgtgc ttggtggggt acctggtcta ctcgggccgc ttgaacggcg aactgcagga
      721 gatcaaatct attctaataa tagcgtacga ggcggcggac aagcgttaca ggggcgtgat
      781 cgacgaaatt gagtcgctca aaacggacac gtttatgatg ttgtcgaact tgcaaaacaa
      841 cacaattcgc acgtgggacg ccgttgcgaa aaacggcaaa aaaattgcca atttggacga
      901 gcgcgtcaac gggctgctgg ccaagcacgc ggtgcccgcg ctcgtgagat aagttattat
      961 caaaactttg gctgcagcta caatatcaca caatatgacg cccaacaaca acgtaatgtt
     1021 cgacgacgcg tcggtgatgt ggatcgacgc cgactacatc taccaaaact ccaaaatgcc
     1081 gctgtccacg ttccaacagc tgctcttctc cattccgtcc aagcatcgca aaatgatcaa
     1141 cgacatcggc aacccggcgt gcaacccgcc gtcgtgctcc tttccgccca gcaacagcac
     1201 ggtcaagtac atggtggaca tttacggcgc ggcggtgctg gcgctgcgct gcccgtcgct
     1261 gttctccgac cagctgctaa ccacgtttac tgctaacaac tacttgagct actgcaaccg
     1321 ccaacggccg tgcccgcagc cgccgtgccc gcagccgccc ttcgactgcg cgcaaaccca
     1381 aatcctggac gcgttggaaa aactggcgcg ccagagcgac ctggtcgtga acagcctcaa
     1441 ccagatctca ctgaaccaat ccaaccagtt tttggaactg tccaacacgc tgaacacggt
     1501 gcgcgcccaa aacgcgcaga tcttggcggc gctggaaacc accaaagacg caatcttgac
     1561 gcgcctcaac gcgttggtgg acgacattaa agcggcgctg cccgaccaat ccgcccaact
     1621 gcaagaattg gccgacaagc tgctggacgc aatcaactcg gtcgcgcaaa cgcttcgcgg
     1681 cgaaatgaac aacaccaatt cgattctaac caatttggcg tccagcatca ccaacatcaa
     1741 cagcacgttg aacaacttgc tggccgccat tgagggtata ggcggcgacg gcggcggtct
     1801 tggcgacgca gataggcaag cgctaaacga ggtgctcagc ctggtcaccg aaataagaaa
     1861 cattttgatg ggcaccgctc gcaagtagca tgcccagaga cacgaaaccg tacagccggc
     1921 cggccaacgc gccgcgcccg ggcgttaaaa ccgagcgctc aaaccagttt aaagcggcgt
     1981 caaccaaata cggcaaacgc gtcaacgacg cgaacaagga aacgcgcccc gtggcgttcg
     2041 tggacatcaa gctcaaccac cgcgccacgc ccgaaatgga gcaacggatg caggccgtgt
     2101 acgcgcggca aaagccgtcc atattcaaca aatccgccgt agcagagttc attaaaaatc
     2161 gcacgtttgt ggtggcgttt gcgcacccca cgtacacgat acagtttaac aaaattccca
     2221 ccgtcgacca gctgcgtgtc tattgttcca acattaacaa ggacttgttg ttcaaagata
     2281 aaaaccaaca aatgcgaaac gcgctgccca acgcggcgtc atttcgcgtg caaattaacg
     2341 acgagccgct gtttaaggtg caaaccgtcg tgtacgacaa agaatccgcc caattggtgt
     2401 tgacgataag gtttttgccc agacaaacaa tggagctgct gccgatgaaa aagtgcgttg
     2461 tatatctgaa catattgtcg aacgcgtctg tggattgggc agtgccggcg gatttgctgc
     2521 gcgcgtttgc caagctggcg ctggcgccgc ccatccccgc gccgcagaac gtttaacgcc
     2581 ccgcttagcc atgcacgcgc cgctcaccgc ggagcagcgc gacgtgtacg acaagtacaa
     2641 gtttgccacg tacgcgcggt cggtggcgtt gacgcgcgcg cagctcgacc agtggcgcga
     2701 caacaaggtt atcgttccgg aacccgtgtc gcgcgcagag acgctgcgcg tggaggccgc
     2761 cacgcgcggc cagagcaaga acgcgctgtg gaacctgctg cggctggacc gcagcaccgc
     2821 gtcgcgctcg tcgggcggcg tcgcactgcg ctcgtccgcg ctggcgtttg gcaacgcgca
     2881 agagaaccgg ctaaagttgg ccaacggaga gctgttcgaa cggctgggcc ggctggccgc
     2941 ggagcgcgcg ggctgccccg tcgccgagac ggtgctggac tgcggcatgt ttattagcgc
     3001 gtttgggctg cactcggcgt cgcccgacgc ctatttcgct atggccgacg gctcgtgcgt
     3061 gcccgtggag atcaagtgcc cgttcaacta ccgcgacacc acggtggacc aaatgcgctt
     3121 ggagctgggt aaggccaacc gcaagtaccg cgtcaagcac acggcgctgc tcgtcaacaa
     3181 ggcgggcccc gcgcaatttg aggtggtcaa gacgcacgac cactatcggc aaatgcaacg
     3241 gcagatgtac gtgatgcgca acgcgcccgt gtgtttttac gtggtgcggt ttaaacacaa
     3301 cctggtggcg ctggccgtgc cgcgcgacga cgatttttgc cgaaaagaag cggccgcgga
     3361 gggcgccgcg ttcgtggctt tcgcaacgga gaacgcgggg cgcgtgcagt ttaagcgcgg
     3421 cgaccgccgc cgcgcgtctt ttgcccaaaa cgccgccgac cacggataca acgccgcgca
     3481 ggtggacgcg ctggtgcgcc gcggactgta tttgtcgtac gggcagttgc gctgcgggca
     3541 ttgcgacgcg tttgcgctgg acggcccgcg ggcgtttgag ctggccatgg cgcgcccaca
     3601 cgaacaatgc gacgggctgg cgctgcagga gcacgagttc gacaatgttg cgtttctcga
     3661 tttcaccaaa cgctacacca gtttggtcga caagcgctgc gacgacgccc gcgcactgcg
     3721 cgtcgacggc ttctacgtgg acgacgccgg cgccgtgaaa accttttgtt gcggcgtgca
     3781 cggcagcaat gcgtcacggc gccaccttcc cacgtgttcg tattatttag caatgggtgt
     3841 aaataaaata caaaataata tgtgatttat ttattggtaa taattaaaaa ctgtttgcac
     3901 aaacttgatt tttatttcgg caagaaccat tcgtccatgt atttgtttga cacgttcgtt
     3961 ttgcattcaa ccggtttgca cgcgtcgctg ttttgcgcgc acgcaatcac acatatttgt
     4021 cacatcgcta tttaaaagga aacgcggtcg caaaagctca aacgttattt gaaaccggcg
     4081 cgcaatgtac ataaagatgg aggttgaatt tgacgaagac acgggcgccc ttcaaatcgg
     4141 cggacaagag gtgtttgtaa tggtgttcga gcccggtcaa gaggtttttg acaaaagctt
//