From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: R.catesbeiana mitochondrial D-loop region DNA.
Date: 13 Aug 92 10:00:23 GMT
Distribution: bionet
Checksum: 00150     8

LOCUS       FRGMTDR      3435 bp ds-DNA             ORG       13-AUG-1992
DEFINITION  R.catesbeiana mitochondrial D-loop region DNA.
ACCESSION   M57480 D00198
KEYWORDS    12S ribosomal RNA; D-loop region; cytochrome b; replication origin;
            transfer RNA-Leu; transfer RNA-Phe; transfer RNA-Pro;
            transfer RNA-Thr.
SOURCE      R.catesbeiana mitochondrial DNA.
  ORGANISM  Mitochondrion Rana catesbeiana
            Eukaryota; Animalia; Chordata; Vertebrata; Amphibia; Lissamphibia;
            Anura; Neobatrachia; Ranoidea; Ranidae.
REFERENCE   1  (bases 1 to 3435)
  AUTHORS   Yoneyama,Y.
  TITLE     The nucleotide sequences of the heavy and light strand replication
            origins of the Rana catesbeiana mitochondrial genome
  JOURNAL   J. Nippon Med. Sch. 54, 429-440 (1987)
  STANDARD  simple staff_review
REFERENCE   2  (bases 1 to 3435)
  AUTHORS   Yoneyama,Y.
  TITLE     The nucleotide sequences of the heavy and light strand replication
            origins of the Rana catesbeiana mitochondrial genome
  JOURNAL   Nippon Ika Daigaku Zasshi 54, 429-440 (1987)
  STANDARD  simple staff_review
COMMENT     There is TAS (termination associated sequence) in the D-loop region
            (see [2]).
            corresponds to DDBJ (rel3.0) entry <FRGMTHORI>(D00198) dated
            09-MAY-1988.
FEATURES             Location/Qualifiers
     CDS             <1..345
                     /product="cytochrome b"
                     /codon_start=1
                     /translation="PHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILFLMPIIHT
                     SKLRSLMFRPIAKIFFWTLIANTAILTWIGGQPVEDPFIIIGQITSGLYFLIFVLLIP
                     TLGLLENKLLKV"
     repeat_region   381..620
                     /rpt_type=tandem
     rep_origin      1610..1673
                     /note="H-strand replication origin region (putative)"
                     /note="putative"
     repeat_unit     1743..1814
     misc_feature    1780..1807
                     /note="conserved sequence block 1"
     repeat_unit     1817..1886
                     /rpt_type=tandem
     misc_feature    1853..1880
                     /note="conserved sequence block 1"
     misc_feature    1979..1996
                     /note="conserved sequence block 2"
     misc_feature    2101..2119
                     /note="conserved sequence block 3"
     repeat_region   2215..2313
                     /rpt_type=tandem
     tRNA            2533..2604
                     /anticodon=(pos:2565..2567,aa:Leu)
                     /product="transfer RNA-Leu"
     tRNA            2607..2677
                     /anticodon=(pos:2638..2640,aa:Thr)
                     /product="transfer RNA-Thr"
     tRNA            complement(2677..2745)
                     /anticodon=(pos:2713..2715,aa:Pro)
                     /product="transfer RNA-Pro"
     tRNA            2747..2816
                     /anticodon=(pos:2779..2781,aa:Phe)
                     /product="transfer RNA-Phe"
     rRNA            2816..>3435
                     /product="12S ribosomal RNA"
BASE COUNT     1080 a    789 c    457 g   1109 t
ORIGIN      908 bp upstream of HindIII site.
        1 cctcacatta aaccagagtg gtacttccta tttgcttacg ccattctccg ctccatccct
       61 aataaactag gcggcgttct cgccctattg ttctcgatct taatcctctt cctaatgcct
      121 atcatccaca cctccaagct ccgttcactc atattccgcc caattgctaa aatcttcttc
      181 tgaaccctaa ttgctaacac agctattctt acatgaatcg ggggacaacc agtagaagac
      241 ccttttatta tcatcggcca gatcacctca ggactatact tcttaatttt tgttcttctt
      301 atcccaacat taggcctttt ggaaaacaag cttcttaaag tctaataaag cataaattta
      361 cattacctca tacttaatat tatactatta cttatgtata atcatcatct attataatat
      421 tatactatta cttatgtata atcatcatct attataatat tatactatta cttatgtata
      481 atcatcatct attataatat tatactatta cttatgtata atcatcatct attataatat
      541 tatactatta cttatgtata atcatcatct attataatat tatactatta cttatgtata
      601 atcatcatct attataatat tatactatat aactccatta catattactt atgtataatc
      661 accattcact atagtattta aaacagatat taagtgggcc atcccaatct ttagaattaa
      721 cagttatgta caacaacatt tacctataac aaccattaat agataccccc acattataag
      781 aatataaacc ttcataagat tatgtacatc ttacaattat aatttaaaaa tacacgtaac
      841 atcaatatta cattataata tgtttaatat ccatattatg tataataaac attaaattat
      901 ttacaacaag cttatcatgc ccaataaaca agtgacaaat ataacacatt aataacctga
      961 ccattaaata atttccacaa catctgcttg caaaagccca tatcatgtat actagattgg
     1021 accttccctt gctaaaccta atgcagatct cattcctaag tgagtccaac tggatcttcc
     1081 aaattactca attcctccaa caaaaatgta atgctccccc tctaaactta ttaatttaac
     1141 acctttaagg ttacatcaca catttacccc tttactgaat gcttcattca tatcatcaag
     1201 gtaagacctt cccttgcata agacccctca gacccttata actatcttcc ttaatccact
     1261 accatggaca atcttatact aaacataaac tgattaattg cataataaat tacctatacc
     1321 ataaataagc cagtcctcaa cactgtaaaa tcacacatga cgcccataca tcagccctat
     1381 cgtacccccg tcaaccagcc atggttcggg cctagggagc tggttaacct tccaatggac
     1441 ctcgattgta gagtaacagt tcttgccctt tagaaggtaa ctgacggatg tgaatctatg
     1501 gacttatctc gcataatcgg gtccaaaatg cattttaaaa ggtaaccctc ctatgcgtta
     1561 aatacctgta tacaagctca ggccacttaa tgacagctag aactactggt agtttttttt
     1621 ggggtccttt catcagctac tcccagtggg ctcactccta aacaaccggg ttggactaac
     1681 ggtgcaggtt ggcaaccact catagtggac tcacggctaa acaataagac cccactatca
     1741 gtccaggtta cacgcatcag cattgtccct tgtatgacac attttaatta atgttaaaat
     1801 gacataaatg tttaatcctg gtagcatgca ttaacatgtc acttgtatga tgcattttaa
     1861 ttaatgttag attgacataa tgcttgatca tcatacctct atatcccccc ccttttcact
     1921 ttccaccttt cttacacccc ccccagcgat ttttagcgtt tttgcaaatt tttcgcgtta
     1981 cccccccctt tcccccccca caacgatttt ccgatagttt gccttaaaac cccccccgag
     2041 attaaggttt atgggaataa ttgctgtagg cctcgccctc cccacacaga gtatctgtaa
     2101 tgccttaacc ccaaggatta cagaacccta ccatgggcct ccccgcaata aacaagtcat
     2161 atgaaagttt tacttgctaa aatgctcaat aaagtctttg cctataaatg caaatttgtt
     2221 tatattttgt ttatattttg tttatatttt gtttatattt tgtttatatt ttgtttatat
     2281 tttgtttata ttttgtttat attttgttta tattatatgt atgtaatgtt ttgttatatt
     2341 atttaattgg cttcatgtgc acataatata ttatattcat acctatgtaa tattaaatta
     2401 gtcttattat tatatttatg cttatacttc atatctacag tataagaact aaacttaaag
     2461 tattcttata tatgaagtat atacttatat actagaatcc cctacataag tcatatacat
     2521 gaaaaattgt ccgcttttaa aggaaaagag ccctccactg gtcttaggcg ccagcatctc
     2581 ttggtgcaag tccaagtaaa agctatgcct tgatagctta aactaaagca ccggtcttgt
     2641 aagccggaga ctgtagccta acccctactc aaggcttcag gataaaagga ctttaacctt
     2701 taccaccggt ccccaaaacc ggcattctac ctaaactata tcctgtactc ttatagctta
     2761 atattaaagt atagcgctga aaacgctaag atgaacccta aaaagttcta ggggtacaaa
     2821 ggtttggtcc tagccttatt atcaactgtt tctcaactta cacatgcaag tatcagcaca
     2881 cccgtgagaa cgccctttaa atcttaccca gataaaggag ctggtatcag gcacaaaccc
     2941 tccgcccaca acacctagtc tcaccacacc ctcaagggta atcagcagtg attaattttg
     3001 cgtatgagcg tcagcttgac tcagttagag aaaagagggc cggctaaccc ggtgccagcc
     3061 gccgcggcta caccgtgggg ctcgagttga tagtcatcgg cgttaagcgt gattaaagtt
     3121 attacaaatt aaggttaaat taatacttag tagttttatg cttgttatta agaaatccac
     3181 aaacgaaagt taccctaatt attatgcttg aatacacgac agctaggaaa acaaactggg
     3241 attagatacc ccactatgcc tagccgtaaa caattaattt acaccaataa gcgccaggga
     3301 attacgagca atgcttaaaa cccaaaggat ttgacggtgt cccaccccac tagaggagcc
     3361 tgttctataa tcgatgatcc ccgatatacc cgaccatttc tcgcttatca gtctgtatac
     3421 ctccgtcgaa agctt
//