From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: chuR=chondroitin sulfate and heparin utilization regulatory gene
Date: 27 Jan 93 05:56:06 GMT
Distribution: bionet
Checksum: 63497 5

LOCUS       S118015      1800 bp    DNA             BCT       21-JAN-1993
DEFINITION  chuR=chondroitin sulfate and heparin utilization regulatory gene
            [Bacteroides thetaiotaomicron, Genomic, 1800 nt]
ACCESSION   S48585 L00678
KEYWORDS    .
SOURCE      Bacteroides thetaiotaomicron
  ORGANISM  Bacteroides thetaiotaomicron
            Unclassified.
REFERENCE   1  (bases 1 to 1800)
  AUTHORS   Cheng,Q., Hwa,V. and Salyers,A.A.
  TITLE     A locus that contributes to colonization of the intestinal tract by
            Bacteroides thetaiotaomicron contains a single regulatory gene
            (chuR) that links two polysaccharide utilization pathways.
  JOURNAL   J. Bacteriol. 174, 7185-7193 (1992)
  STANDARD  full automatic
COMMENT     This entry [NCBI gibbsq 118015] was created by the journal scanning
            component of NCBI/GenBank at the National Library of Medicine.
            This sequence comes from Fig. 4.
FEATURES             Location/Qualifiers
     CDS             365..1570
                     /note="Description: chondroitin sulfate and heparin
                     utilization regulatory gene;  For the protein sequence
                     (NCBI gibbsq 118016):  Method: conceptual translation
                     supplied by author.  This sequence comes from Fig. 4."
                     /gene="chuR"
                     /product="ChuR"
                     /codon_start=1
                     /translation="MKATTYAPFAKPLYVMVKPVGAVCNLACEYCYYLEKANLYKENP
                     KHVMSDELLEKFIDEYINSQTMPQVLFTWHGGETLMRPLSFYKKAMELQKKYARGRTI
                     DNCIQTNGTLLTDEWCEFFRENNWLVGVSIDGPQEFHDEYRKNKMGKPSFVKVMQGIN
                     LLKKHGVEWNAMAVVNDFNAEYPLDFYNFFKEIDCHYIQFAPIVERIVSHQDGRHLAS
                     LAEGKEGALADFSVSPEQWGNFLCTIFDEWVKEDVGKFFIQIFDSTLANWMGEQPGVC
                     TMAKHCGHAGVMEFNGDVYSCDHFVFPEYKLGNIYSQTLVEMMHSERQHNFGTMKYQS
                     LPTQCKECDFLFACNGECPKNRFSRTADGEPGLNYLCKGYYQYFQHVAPYMDFMKKEL
                     MNQQAPATS"
     CDS             1751..1798
                     /partial
                     /note="Description: orf2 3' of chuR;  For the protein
                     sequence (NCBI gibbsq 118017):  Method: conceptual
                     translation supplied by author.  This sequence comes from
                     Fig. 4."
                     /codon_start=1
                     /translation="MMKKKGLKLEAQDLYN"
BASE COUNT      579 a    352 c    369 g    500 t
ORIGIN      
        1 atcgattttc cctttcattg aaaatgatcc atgcactact tcagccgagt ccagttttgt
       61 ccattctcca tccctcaaag tcttcagata taacattttt ccatccagac catttactga
      121 agatgttcct tctatcttat acttatgagt acacgaagct agaaagggaa gcaaaagcac
      181 aaaaggcaaa atcttattca cgttcattgt ttcattaaat tctgggtaca aaggtacaac
      241 tgattcggac ttaaaagaaa cattttatca atatttaaaa cttgtaagac tcttttcttt
      301 aataatcctt ataaacagag gtgggagatc atttttttca tttagtttat ctaaatttgc
      361 agtcatgaaa gcaacaactt atgcaccttt tgccaaaccg ctttatgtca tggtaaagcc
      421 cgtgggagcc gtatgcaacc tcgcatgcga atactgctat tatttggaaa aggcgaatct
      481 atacaaagaa aacccgaaac atgtaatgag cgatgagcta ctggaaaagt ttatcgacga
      541 gtatatcaac tctcaaacca tgcctcaagt gctttttacc tggcacggtg gagaaacgct
      601 gatgcgtccg ctttcttttt ataaaaaggc gatggagctg caaaagaaat acgcccgcgg
      661 acgtacgatt gacaattgta tccagacgaa tggaaccttg cttacagacg aatggtgcga
      721 gttcttccgt gaaaacaact ggctggtagg ggtttccatt gatggcccgc aagagtttca
      781 tgacgaatat cgcaaaaata agatgggcaa accttctttc gtcaaagtga tgcaagggat
      841 caatctcctg aaaaaacatg gagtagaatg gaacgctatg gctgttgtga acgatttcaa
      901 tgccgaatat ccattagact tttataattt cttcaaagaa atagattgcc attatattca
      961 gttcgctccg attgttgaac gcattgtttc acatcaggac ggtcgtcatc ttgcctctct
     1021 ggcagaaggt aaagaagggg cattggctga tttttccgta agtccggaac aatggggtaa
     1081 ctttctctgt acaatttttg atgaatgggt aaaagaagat gtgggcaaat tcttcataca
     1141 gatattcgat tccacattgg ctaactggat gggcgagcaa ccgggcgtat gtacaatggc
     1201 gaagcattgc ggacatgccg gcgttatgga attcaacgga gacgtatact cttgtgacca
     1261 cttcgtattc ccggaatata aattgggaaa tatctatagc caaactttgg tggaaatgat
     1321 gcatagtgaa cgacagcata acttcggaac aatgaaatac caatcactcc caacccaatg
     1381 caaggagtgc gactttctat ttgcctgcaa cggagaatgt ccaaagaacc gcttcagtcg
     1441 gacagcggac ggcgaacccg gtctgaacta tctgtgcaaa ggatattacc aatactttca
     1501 gcatgtagct ccctatatgg atttcatgaa aaaagaatta atgaatcaac aggctcctgc
     1561 aacatcatga aagcactaaa agacggaagt ttaaaaatag aatattaaca tcataattta
     1621 taattgttat cataaagtaa tgaacagact aagactttat ttattagcgc tgacagcgct
     1681 gctggtatgt acgtaaaagc ggacgaaggt atgtggttat tgcaactaat gcaacagcaa
     1741 cattcatagt atgatgaaga aaaaaggatt aaaactggaa gcccaggatt tatataatcc
//