From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Cucumber mosaic virus (M-CMV) RNA 3, complete genome.
Date: 21 Jul 92 10:06:47 GMT
Distribution: bionet
Checksum: 46821     6

LOCUS       MCVCP3A2     2215 bp ss-RNA             VRL       21-JUL-1992
DEFINITION  Cucumber mosaic virus (M-CMV) RNA 3, complete genome.
ACCESSION   D10539
KEYWORDS    3a protein; RNA encapsidation; capsid protein.
SOURCE      Cucumber mosaic virus (strain M) cDNA to genomic RNA.
  ORGANISM  Cucumber mosaic virus
            Viridae; ss-RNA nonenveloped viruses; Isometric ss-RNA viruses;
            Cucumovirus.
REFERENCE   1  (bases 1 to 2215)
  AUTHORS   Owen,J.E., Shintaku,M., Aeschleman,P., Tahar,S. and Palukaitis,P.
  TITLE     Nucleotide sequence and evolutionary relationships of cucumber
            mosaic virus (CMV) strains: CMV RNA 3
  JOURNAL   J. Gen. Virol. 71, 2243-2249 (1990)
  STANDARD  full staff_review
COMMENT     Submitted (20-Feb-1992) to DDBJ by:
            Michael Shintaku
            Department of Molecular Virology
            The Samuel Roberts Noble Foundation
            P O Box 2180
            Ardmore, Oklahoma 73402
            U.S.A.
            Phone:  405-223-5810
            Email:  MSHINTAKU@AARDVARK.UCS.UOKNOR.EDU
            Fax:    052-783-0719
FEATURES             Location/Qualifiers
     CDS             121..960
                     /product="3a protein"
                     /gene="3a"
                     /evidence=EXPERIMENTAL
                     /codon_start=1
                     /translation="MAFQGTSRTLTQQSSAATSDDLQKILFSPEAIKKMATECDLGRH
                     HWMRADNAISVRPLVPEVTHGRIASFFKSGYDVGELCSKGYMSVPQVLCAVTRTVSTD
                     AEGSLRIYLADLGDKELSPIDGQCVSLHNHDLPALVSFQPTYDCPMETVGNRKRCFAV
                     VIERHGYIGYTGTTASVCSNWQARFSSKNNNYTHIAAGKTLVLPFNRLAEQTKPSAVA
                     RLLKSQLNNIESSQYLLTNVKINQNARSESEDLNVESPPAAIGRFSASRSEAFRPQVV
                     NGL"
     misc_feature    959..1256
                     /note="M-CMV RNA3 intercistronic region"
                     /evidence=EXPERIMENTAL
     CDS             1257..1913
                     /function="CMV RNA encapsidation"
                     /note="coat protein or capsid protein gene"
                     /product="capsid protein"
                     /gene="CP"
                     /evidence=EXPERIMENTAL
                     /codon_start=1
                     /translation="MDKSESTSAGRNRRRRPRRGSRSASSSADANFRVLSQQLSRLNK
                     TLAAGRPTINHPTFVGSERCRPGYTFTSITLRPPKIDRGSYYGKRLLLPDSVTEYDKK
                     LVSRVQIRVNPLPKFDSTVWVTVRKVLASSDLSVAAISAMFADGASPVLVYQYAASGV
                     QTNNKLLCDLSAMRADIGDMRKYAILVYSKDDALETDELVLHVDIEHQRIPTSRVLPV
                     "
BASE COUNT      520 a    515 c    526 g    654 t
ORIGIN
        1 gtaatcttac cactgtgtgt gtgcgtgtgt gtgtgtcgag tcgtgttgtc cgcacatttg
       61 agtcgtgctg tccgcacata ttttatcttt atgtgtacag tgtgttagat ttcccgaggc
      121 atggctttcc aaggtaccag taggacttta actcaacagt cctcagcggc tacgtctgac
      181 gatcttcaaa agatattatt tagccctgaa gccattaaga aaatggctac tgagtgtgac
      241 ctaggccggc atcattggat gcgcgctgat aatgctattt cagtccggcc cctcgttccc
      301 gaagtaaccc acggtcgtat tgcttccttc tttaagtctg gatatgatgt tggtgaatta
      361 tgctcaaaag gatacatgag tgtccctcaa gtgttatgtg ctgttactcg aacagtttcc
      421 actgatgctg aagggtcttt gagaatttac ttagctgatc taggcgacaa ggagttatct
      481 cccatagatg ggcaatgcgt ttcgttacat aaccatgatc ttcccgcttt ggtgtctttc
      541 caaccgacgt atgattgtcc tatggaaaca gttgggaatc gtaagcggtg ttttgctgtc
      601 gttatcgaaa gacatggtta cattgggtat accggtacca cagctagcgt gtgtagtaat
      661 tggcaagcaa ggttttcatc taagaataac aactacactc atatcgcagc tgggaagact
      721 ctagtactgc ctttcaacag attagctgag caaacaaaac cgtcagctgt tgctcgcctg
      781 ttgaagtcgc aattgaacaa cattgaatct tcgcaatatt tgttaacgaa cgtgaagatt
      841 aatcaaaatg cgcgcagtga gtccgaggat ttaaatgttg agagccctcc cgccgcaatc
      901 gggagatttt ccgcgtcccg ctccgaagcc ttcagaccgc aggtggttaa cggtctttag
      961 cactttggtg cgtattagta tataagtatt tgtgagtctg tacataatac tatatctata
     1021 gtgtcctgtg tgagttgata cagtagacat ctgtgacgcg atgccgtgtt gagaaggaac
     1081 acatctggtt ttagtaagcc tacatcatag ttttgaggtt caattcctct tactccctgt
     1141 tgagcccctt actttctcat ggatgcttct ccgcgagatt gcgttattgt ctactgacta
     1201 tatagagagt gtgtgtgctg tgttttctct tttgtgtcgt agaattgagt cgagtcatgg
     1261 ataaatctga atcaaccagt gctggtcgta accgtcgacg tcgtccgcgt cgtggttccc
     1321 gctccgcctc ctcctccgcg gatgctaact ttagagtctt gtcgcagcag ctttcgcgac
     1381 ttaataagac gttggcagct ggtcgtccaa ctattaacca cccaaccttt gtagggagtg
     1441 aacgctgtag acctgggtac acgttcacat ctattaccct aaggccacca aaaatagacc
     1501 gtgggtctta ttacggtaaa aggttgttac tacctgattc agtcacggaa tatgataaga
     1561 agcttgtttc gcgcgttcaa attcgagtta atcctttgcc gaaatttgat tctaccgtgt
     1621 gggtgacagt ccgtaaagtt cttgcctcct cggacttatc cgttgccgcc atctctgcta
     1681 tgttcgcgga cggagcctca ccggtactgg tttatcaata tgccgcatct ggagtccaaa
     1741 ccaacaataa attgttgtgt gatctttcgg cgatgcgcgc tgatataggt gacatgagaa
     1801 agtacgccat cctcgtgtat tcaaaagacg atgcgctcga gacggatgag ctagtacttc
     1861 atgttgacat cgagcaccaa cgcattccca catctagagt gctcccagtc tgattccgtg
     1921 ttccagaatc ctccctccga tctctgtggc gggagctgag ttggcagttc tgctataaac
     1981 tgtctgaagt cactaaacgt tttttacggt gaacgggttg tccatccagc ttacggctaa
     2041 aatggtcagt cgtggagaaa tccacgccag cagatttaca aatctctgag gcgcctttga
     2101 aaccatctcc taggtttctt cggaaggact tcggtccgtg tacctctagc acaacgtgct
     2161 agtttcaggg tacgggtgcc cccccacttt cgtgggggcc tccaaaagga gacca
//