From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Anopheles gambiae RT1 retroposon.
Date: 31 Dec 92 01:46:11 GMT
Distribution: bionet
Checksum: 04952 15

LOCUS       MSQRT1RET    8071 bp ds-DNA             INV       18-DEC-1992
DEFINITION  Anopheles gambiae RT1 retroposon.
ACCESSION   M93690
KEYWORDS    nucleic acid binding protein; retroposon; reverse transcriptase.
SOURCE      Anopheles gambiae DNA.
  ORGANISM  Anopheles gambiae
            Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
            Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicoidea;
            Culicidae; Anophelelinae.
REFERENCE   1  (bases 1 to 8071)
  AUTHORS   Besansky,N.J., Paskewitz,S.M., Mills-Hamm,D.M. and Collins,F.H.
  TITLE     Distinct families of site-specific retroposons occupy identical
            positions in the rRNA genes of Anopheles gambiae
  JOURNAL   Mol. Cell. Biol. 12, 5102-5110 (1992)
  STANDARD  full automatic
FEATURES             Location/Qualifiers
     repeat_unit     1..17
                     /rpt_type=flanking
                     /note="putative"
     5'UTR           18..2445
     repeat_region   214..1962
                     /function="unknown"
                     /rpt_type=tandem
                     /rpt_unit=1..500
                     /note="putative"
     3'UTR           7751..8054
     polyA_signal    8020..8025
     CDS             2445..4286
                     /partial
                     /note="putative;  ORF1; has homology with nucleic acid
                     binding motif; putative cds"
                     /codon_start=1
                     /translation="CVGLPTNPQVGARNVETNMSGLGGDAHPQGSSGRVLRPRARSVS
                     LNRVDALKVSDSTPVEPPPTAGIVYLSDDEEEELNCTILAGPSGLAVPPMGKVPLVVL
                     DKLPSQSQQREEMTVPATSTPKAGKCSSAEPSLSEMNESLKLLAMQVAQLSKELSLCR
                     KELQESLMKNAALERELETYRMGARSVIELQQQAAAAPMMTAQGAHSSRNRRGRQGPQ
                     QQEQRQQQQQHQQREQQQQQQQQQQQQQQQQQQQQRNQQREWQQQQQQQQHQQREQQQ
                     QQRVQQQNQQHQRQQQQQQQQRQQQQQQEQQELWTTVVRRRQNTQQQQQSNQPQQQQQ
                     QTGRYQPPQMRQQLQQQQQQRQPQRYVVAGSSQQQQQQHQQQQQKRKRPKPELIEISP
                     GQNETFESVSLKIRKAVDDNGTHKELKDFIIMGRRTDKALLRLTLARSANATLILQQI
                     RTIIGEAGTCRHVTEMAALVVNDIDPLAKEEELTALLENKIEGGAGIVSTSIRTMPDG
                     TQRARVRLPAKAAKALDGTKLRLGFCISRVKMAPPTPKEHLRCYRCLEHGHNARDCRS
                     PVDRQNVCIRCGQEGHKAGTCMEEIRCGKCDGPHVIGDRTCDRSATQ"
     CDS             4112..7750
                     /partial
                     /note="putative;  has homology with reverse transcriptase;
                     ORF2"
                     /codon_start=1
                     /translation="ARPQRPRLSVTCRPTKCLHPLRTGRSQGWYMHGRNTLRQMRWPP
                     CYRGPDMRSVGHPMTQLKVLQVNLGGGRIAQDLVLQTARQMEVDVLVLSHTYRPPENN
                     PRWAVDASKKVAVVATGRYPLQGQWSSDVPGLIAAKVGGITFLSCYAPPSLSREGFAE
                     FVEAIELEAQSHPQVVVAGDFNAWHEEWGSRRSNERGEVLLEASQQLGLLLMNRGNVA
                     TFVGNGVATASVVDVTFASSSIAQPSTWLVRNTDTRSDHRYITYSVGPASADQQRNQG
                     QSRQRGQRERFQHAGTRFKTKQFSKENFLATLHGEGFREKAVNHQGMISAMISACEKT
                     MQRMTSSFPDPHRDVYWWTPLIALLRQNCEQTRDRMQQTSDLQNRSLAAAQYRTAKAE
                     LDRAIRASKKAAFQELIDAAEENVFGAGYLVVLSRLRGGRAPPETERARLESIVTELF
                     PQHPPFNWPSISSEEEQEQPADQQTPWTQVTIPELRLIASTMPNKKAPGLDGIPNAAV
                     KAAILAYTDVFQALYQSCLETATFPAPWKRQRLVLLPKPGKPPGSNGSYRPLCMLDAL
                     GKVLEKLILNRLHNHLEDPAAVRLSDRQHGFRRGRSTIGAIRTVIEAGQSAMRFRRTN
                     GRDNRFLLVVSMDVKNAFNTASWQAIATALQMKGVPAGLQRIVRSYFENRELVFETSD
                     GPVTRSITAGVPQGSILGPTLWNTMYDGVLDVALPQDCEMVAYADDLVLLIPGIDVNA
                     VKAAAEEAVASVSHWMAQHHLQIAPEKTECVLISSTKNPTQVTIRVGDVEVTSSRTMR
                     YLGVTLHDHLSWLPHVREVTTRARKIADAVTRLLRNHSGPKTSKARLLASVAESVIRY
                     AAPIWHGEVTKRECRRLLERVQRVSARRVARTFRTVRYETATLLAGLTPICLLIEEDA
                     RVFERVNDPGRSITKAAIRLEERQRTITMWQSQWDAEADTSRYTRWTHRIIRDISAWQ
                     GRRHGEMTFHLAQVLSGHGFFREYLAINGFTESPDCRSCAGVPENAHHAIFECPRFAR
                     VRMEYFGELGPNPVTPDSLQDFLMGSQDNWSSFCEAARRITTTLQRDWDTEREQRAAS
                     NREEAEIQQQLQREEDERRTEERRQLHNEANRAYRQRNRRSQPTPPAPPPTPREAARL
                     EDGRRRVARWRERQRMIRNGGIQMLRALFGHDAWSSESDDEPDDVERGGLDAAQQAAA
                     AEAERAAR"
BASE COUNT     2183 a   2005 c   2218 g   1665 t
ORIGIN      
        1 aagccagtta tccctgtagt gtcaaacgtg aggtcgtact gtaccgacac gttgtgtttg
       61 ggctccgaaa aaaggactta aaaacagtgc aaaatcgtcg ttaatcgact ttaatagtgt
      121 gaaaaacgtg ctcagggcac ctgatttacc ctttaagagc gttatcaagt gtttttaagg
      181 cgaaaattca acaaaaatcg tgcatttgtg tttgttgcct atgaaccccc caccatgtgt
      241 ttgtgtgaca tggtgtaaaa gcagaaaatc gaaaaaagtg cccaaaaagt gccagaattg
      301 cacgatttta gtgtaaacag tgcatctgag cacgaaaaaa ggtgttaaga agtgatccgc
      361 gcatgaaaaa accacaaaat tgtgaaaaaa aagttttgcg tcatccagcc catactgggc
      421 caagtaatcg ccggatctgt gttttcagcg atataatttg cccagattct cgccgggtgt
      481 ggtttttaag gccatcgggt ggccaaagaa cgttcatcca gtgaaaaccg atcgaaaatc
      541 ggccgtttgt gaccgaaaaa aagtgaaata atatttaata ttattcggtg aacaaattta
      601 cgaaaattcg gttccaggtg aaattgggtg aaattgggtg ggttgactgt acggcccctg
      661 atggcccctg agttaaggtg ccgttacacg agtaaccata gtttaggtga ccatcgacgt
      721 gcggaaaatt tttgtgacat cggcctattg cgaatgctca ccgtgtgttt gtgtgacgtg
      781 gtgcaaaaga agaaattcga aaaaagtgcc caaaatgtgc ctgagttgca ctattttagt
      841 gtaaacagtg catctgagca cgaaaaaagg tgttaagaag tgatccgcgc atgaaaaaaa
      901 ccacaaaatt gtgaaaatag ttttgcgtca tccagcccat actgggccaa gtaatcgccg
      961 gatctctgtt tgcagggata taatttgccc agattctcgc cgggtgtggt ttttaaggcc
     1021 atcgggtggc caaagaacgt tcatccagtg aaaaccgatc gaaaatcggc cgtttgtgac
     1081 cgaaaaaaag tgaaataata tttaatatta ttcggtgaac aaatttacga aaattcggtt
     1141 ccaggtgaaa ttgggtgggt tgactgtacg gcccctgacg gcccctgagt taggcatcgg
     1201 ttgtcaaacg gcctgacagc tcggacggac cgatcgttaa ggtgccgtta cacgagtaac
     1261 catagtttag gtgaccatcg acgggcggaa aatgtttgtg acatcggcct attgcgaatg
     1321 ctcaccgtgt gtttgtgtga cgtggtgcta aagaagaaat tcgaaaagtg cccaaaatgt
     1381 gcctgagttg cactatttta gtgtaaacag tgcatctgag cacgaaaaaa ggtgtaaaga
     1441 agtgatccgc gcatgaaaaa accacaaaat tgtgaaaaaa gttttgcggt catccagccc
     1501 atactgggcc aaggtttcgc cggatctctg ttttcagcga tataatttgc ccagattctc
     1561 gccgggtgcg gtttttaagg ccagcgggtg gccaaagaac gttcatccag tgaaaaccga
     1621 tcgaaaatcg cccgttctgt gaccgaaaaa agtgaaataa tatttaatat tattcgggga
     1681 acaaatttat gaaaattcgg ttccgggtga aattgggtgg gttgactgta cggcccctga
     1741 cggaccgatt gttaaggtgc cgtcacacga gtaaccatag tttaggtgac catcgacgtg
     1801 cagaaaattt ttgttttttt ttgtgacatc tgccaattgc gaatactcac cgtgtgcttg
     1861 tgcgacgtgg tgcaaaaaca gaaattcgaa aaaagtgccc aaaatgtgcc tgagttgcac
     1921 tattttagtg taaacagtgt atctgagcac gaaaaaaggt gtgacatcag tttgacagct
     1981 aagcagagga atttcaaagt ggcataactt cggcacccgc caagctatcc cgacgggaaa
     2041 gtgttgcctg tggaagcggt atcgaaatct ttcagggcag ggtgaaatat ttcactttgg
     2101 aaatatttca cattttgaat tttttttttt tttttttttt tttttttttt tttttttttt
     2161 tttttttttt ttttttcttc tcttcaaaaa aaaaccatct tccatgtgcg cgggcgtcag
     2221 gcagagtgcg tcgggctgcc atcaaaccct caagtaggtg cgcgtttgtg aaagcggccc
     2281 tgaaatcttt cagggagggt gaaatatttc acttttgaaa tatttcaaaa tttgaaattt
     2341 ttcaacattt caaaaatccg ttctccatcg gttttcttga cgaacctaaa accgggggtc
     2401 ggtttctgac gcctcgttgg cgagagtgcg ggcgttaggc atagtgcgtc gggctgccaa
     2461 caaaccctca agtaggtgcg cgcaacgttg aaaccaacat gtcggggctg ggcggtgatg
     2521 cccatcccca agggagctcg ggacgagtac ttcgcccgag ggctcgatcg gtgtccctca
     2581 accgggtcga cgcattaaaa gtgtctgact caacaccggt ggagccacca cccaccgcag
     2641 gcatcgtcta cttgagtgat gatgaagaag aagaattgaa ctgcacgatc ctcgcgggcc
     2701 cgtcgggatt agcagttcca ccaatgggga aggtgccatt ggtagtgctg gacaagttgc
     2761 ccagccagag tcaacagcgc gaggagatga cggtaccggc cacctcaaca ccaaaggctg
     2821 gtaagtgttc ttctgctgaa ccatctctct cagagatgaa cgagagcttg aagctcctgg
     2881 ccatgcaggt tgctcagctc tcaaaggagc ttagcctctg ccgtaaggag ctccaggaaa
     2941 gtttgatgaa aaatgcggcg cttgaacggg agctcgaaac gtacaggatg ggcgcccgtt
     3001 cggtcatcga gctgcagcag caagcagcag cagccccaat gatgacagcc cagggagccc
     3061 acagctctcg caaccgtcgc ggtcgccaag gaccacagca gcaggagcag cggcagcagc
     3121 agcaacagca tcagcagcgg gaacagcagc agcagcagca gcagcagcag cagcagcagc
     3181 agcagcaaca acaacagcag cagcggaacc agcagcgtga atggcagcag cagcagcagc
     3241 agcagcagca tcaacagcga gaacagcagc agcagcaacg ggtgcagcaa cagaatcagc
     3301 agcaccaacg tcagcagcag cagcagcagc agcagcggca acagcaacag cagcaggagc
     3361 agcaagaatt atggacgacg gtagtgcgcc gccgtcaaaa tacacagcag cagcagcagt
     3421 ctaaccaacc gcagcaacaa caacagcaga ctgggcggta tcagccgccg caaatgaggc
     3481 agcagctaca gcagcaacag cagcaacgac agccacagcg atatgtggtc gcaggctcgt
     3541 cgcaacagca gcagcagcag catcaacagc agcagcagaa gcgtaagcgt cctaagcccg
     3601 aactgataga gatctctcct ggtcagaacg agactttcga gagcgtctcc ttgaaaatcc
     3661 gtaaagccgt tgacgataat ggcacacata aggagttaaa ggatttcatc atcatgggcc
     3721 ggcgcacaga taaggcgttg ctacgactga cgcttgctag atccgcaaac gcgaccttaa
     3781 ttctccagca gatccgaacg atcatcggcg aggctggaac ttgtcgacac gtgacggaaa
     3841 tggcggcctt ggtagtaaac gacatcgacc ccctagccaa ggaggaagag cttacagctc
     3901 tccttgaaaa caagatcgag ggtggggcag gcatcgtctc aacgagcatt aggacaatgc
     3961 cggatggcac ccagcgggca cgcgtccgtc tgccagccaa ggccgccaaa gcgctggatg
     4021 gtacgaagct tcgcttgggc ttctgcattt ccagagtgaa gatggctcct ccaacaccca
     4081 aagagcatct tcgctgctac cgatgccttg agcacggcca caacgcccgc gattgtcggt
     4141 cacctgtaga ccgacaaaat gtttgcatcc gttgcggaca ggaaggtcac aaggctggta
     4201 catgcatgga agaaatacgc tgcggcaaat gcgatggccc ccatgttatc ggggaccgga
     4261 catgcgatcg gtcggccacc caatgacgca gctaaaagtc ctccaagtga acctgggtgg
     4321 aggcaggatc gcccaagatc tggtcctgca aaccgcccga caaatggaag tggacgtgct
     4381 ggttctttcc cacacgtatc gaccacccga gaacaaccca agatgggcag ttgatgcctc
     4441 caaaaaggtg gcagtcgtgg ccacaggacg ataccctcta caaggacaat ggagcagtga
     4501 tgttccaggc cttatagctg ccaaggtggg tggcatcacc ttcctaagct gctacgcgcc
     4561 acccagcctg tcgcgggaag gatttgcgga attcgttgaa gcaattgaat tggaagccca
     4621 atcccaccct caggtagtag ttgccggaga ctttaacgct tggcatgagg agtggggaag
     4681 ccgacgcagc aatgagcgtg gggaagtact gctcgaggcg tcccagcaat tgggcctgct
     4741 gctgatgaat cgagggaatg tggcaacctt tgttggaaac ggtgtggcga ctgccagcgt
     4801 tgtcgacgtg accttcgcca gctcgtccat agctcagccg agcacttggt tggtaagaaa
     4861 cacggacacg cgatctgacc ataggtatat cacctattcg gtaggcccag cgtcagcaga
     4921 ccagcagcgt aaccaaggac agtcacgtca acggggccag cgagagcgtt ttcaacatgc
     4981 aggcacgcga tttaagacga aacagttctc gaaagagaat ttcctggcca cgctacatgg
     5041 cgagggattc cgagagaagg cagtcaatca ccagggaatg atctcggcaa tgatatcggc
     5101 ctgcgagaaa accatgcaaa ggatgacgtc gtctttcccc gaccctcatc gggacgttta
     5161 ctggtggacg ccactgattg ctctgcttag gcaaaactgc gagcagacga gagatcgcat
     5221 gcagcagaca agtgatctcc agaaccgaag tctggctgca gcccaatacc gaacagctaa
     5281 agctgagctg gatagagcta tacgtgccag caaaaaggcc gccttccagg aattgatcga
     5341 tgctgcggag gaaaacgttt tcggagccgg gtacttagta gtcctctccc gtcttcgcgg
     5401 tggaagggcc ccacccgaga cggagagagc gaggcttgaa agcatcgtta cagagctttt
     5461 cccgcaacat ccgcccttca actggcccag catcagttcc gaggaagaac aggaacagcc
     5521 tgcagaccag cagactccat ggacccaagt cacgatcccg gaactccgtc tgatagctag
     5581 caccatgccg aacaaaaaag cgccgggcct tgacggaatt ccgaacgccg ctgtcaaggc
     5641 tgcaatcctt gcgtacacgg acgttttcca ggcgttgtac caaagctgtc tggaaacggc
     5701 tacatttcca gcaccatgga aacgacagcg gttggtactg ctccccaagc cggggaaacc
     5761 accgggtagc aacgggtcat accgaccttt gtgcatgctg gatgccttag ggaaagtgct
     5821 ggagaagctc attctaaaca gacttcacaa ccacctggaa gatcctgctg cggtgaggct
     5881 gtcagacagg cagcatggct tccggagggg gcgatctaca attggcgcca ttcgaacagt
     5941 gatcgaggct ggtcagagcg cgatgagatt ccgccgcacg aacgggcggg ataacaggtt
     6001 cctgctggtc gtgtcaatgg atgtcaagaa tgccttcaat acggcaagct ggcaggccat
     6061 cgccactgca ctgcagatga aaggagtacc tgctggtctg caaagaatcg tgaggagcta
     6121 cttcgagaac cgagagttgg tcttcgagac atccgacggc ccagtaactc ggtccatcac
     6181 ggctggtgtt ccacagggtt cgattcttgg ccccaccctg tggaacacca tgtacgatgg
     6241 agttctggac gtcgcccttc cgcaggactg cgagatggtg gcgtatgctg acgacttggt
     6301 gctgctgatt ccgggcatcg acgtaaatgc agtgaaggct gcagccgagg aggcggtcgc
     6361 cagtgtctct cactggatgg ctcaacatca tctccagatt gcgccggaaa agacggagtg
     6421 cgtgcttatc tccagcacga agaaccctac gcaggtcacc ataagagtag gggacgtgga
     6481 ggtgacatct tcccgcacga tgcgttacct tggggtgacc cttcacgatc acctatcgtg
     6541 gctgccccat gtccgagagg taaccactcg ggcaaggaag atagcagatg ccgttacccg
     6601 cctcttgcgc aaccacagtg gaccaaagac cagcaaagcg cgactgttgg cctcggtcgc
     6661 agagtcggtc atccgatatg ctgcgcccat ctggcatggc gaggtgacga agagagagtg
     6721 tcgtcgactt ttggagaggg ttcagcgagt ctcagcacgg agggtggcac gcaccttccg
     6781 taccgtaagg tatgagaccg ccaccctcct cgccgggctg acccccatct gtctcttgat
     6841 agaggaggat gcgcgagtgt tcgagcgtgt taatgatccg ggtcggtcga taacgaaggc
     6901 agccatccgg ttggaggaga ggcagcgcac catcacgatg tggcagagcc aatgggacgc
     6961 cgaggccgac acctccagat acacccggtg gacgcatcgg ataatccgcg acatcagcgc
     7021 ttggcaaggc cggagacacg gggagatgac cttccacttg gcccaggtgc tctctggaca
     7081 tgggttcttc agagagtacc tggccatcaa cggctttacg gaatcccctg actgtcgcag
     7141 ctgtgcgggt gttccggaaa atgcccatca cgccatcttc gaatgcccca ggtttgctcg
     7201 agtgaggatg gagtactttg gtgaactggg gccgaatccg gtcacgccgg acagtcttca
     7261 ggacttcctt atgggcagcc aagacaactg gagcagcttc tgtgaggcgg cacgtcgaat
     7321 aacaacaacg ctgcagcgtg actgggacac ggaacgagaa cagcgggctg cttccaatcg
     7381 tgaggaagct gaaatacaac agcagctaca gcgagaggaa gacgaacgcc gcactgaaga
     7441 acggcggcag ctccacaatg aggcaaatcg tgcctaccgc cagcgcaata ggagaagtca
     7501 acctactcca ccagctccac caccaacacc cagggaggcc gctcgcctcg aagatgggcg
     7561 acggagagtg gcccgctggc gggaaagaca acgaatgatt cggaacggtg gaatccaaat
     7621 gctacgagcg ctgttcggcc atgatgcctg gtcgagcgaa agtgacgatg aacccgatga
     7681 cgtcgagcga ggcggacttg atgctgccca gcaggcagca gcagccgaag ccgaaagagc
     7741 ggcacgctaa agctaacttt agtaaaaaga acaacgaaag tgtaaaaaaa aaaaagagaa
     7801 aggtgcttcg gtacagatat agggctcccc ttaagggaat gaattcagag gaacagtttg
     7861 gaaaatagaa tttcaactta aattaaacgg aaaggtgcga acgcacggct aaaaagttag
     7921 gctccctatg agcatcacgt ccacccttaa atcccttcgc agggcataag gggcggatta
     7981 tgagagggct gggttttctt ttcgatgtaa catacgatca ataaaaatcc actcgatata
     8041 aaaaaaaaaa aaaaaagcca gttatccctg t
//