From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: major inner capsid protein [human rotavirus, group C/Belem, Genomic
Date: 6 Jan 93 07:10:43 GMT
Distribution: bionet
Checksum: 04899 4

LOCUS       S113507      1353 bp    RNA             VRL       04-DEC-1992
DEFINITION  major inner capsid protein [human rotavirus, group C/Belem, Genomic
            RNA, 1353 nt]
ACCESSION   S44818 M94155
KEYWORDS    .
SOURCE      human rotavirus group C/Belem
  ORGANISM  Unclassified.
            Unclassified.
REFERENCE   1  (bases 1 to 1353)
  AUTHORS   Cooke,S.J., Clarke,I.N., Freitas,R.B., Gabbay,Y.B. and Lambden,P.R.
  TITLE     The correct sequence of the porcine group C/Cowden rotavirus major
            inner capsid protein shows close homology with human isolates from
            Brazil and the U.K.
  JOURNAL   Virology 190, 531-537 (1992)
  STANDARD  full automatic
COMMENT     This entry [NCBI gibbsq 113507] was created by the journal scanning
            component of NCBI/GenBank at the National Library of Medicine.
            This sequence comes from Fig. 3.
FEATURES             Location/Qualifiers
     CDS             23..1210
                     /note="VP6;  For the protein sequence (NCBI gibbsq
                     113508):  Method: conceptual translation supplied by
                     author.  This sequence comes from Fig. 3."
                     /product="major inner capsid protein"
                     /codon_start=1
                     /translation="MDVLFSIAKTVSDLKKKVVVGTIYTNVEDVVQQTNELIRTLNGN
                     IFHTGGIGTQPQKEWNFQLPQLGTTLLNLDDNYVQSTRGIIDFLSSFIEAVCDDEIVR
                     EASRNGMQPQSPALILLSSSKFKTINFNNSSQSIKNWNAQSRRENPVYEYKNPMLFEY
                     KNSYILQRANPQFGSVMGLRYYTTSNTCQIAAFDSTLAENAPNNTQRFVYNGRLKRPI
                     SNVLMKIEAGAPNISNPTILPDPNNQTTWLFNPVQLMNGTFTIEFYNNGQLIDMVRNM
                     GIVTVRTFDSYRITIDMIRPAAMTQYVQRIFPQGGPYHFQATYMLTLSILDATTESVL
                     CDSHSVEYSIVANVRRDSAMPAGTVFQPGFPWEHTLSNYTVAQEDNLERLLLIASVKR
                     MVM"
BASE COUNT      477 a    220 c    232 g    424 t
ORIGIN      
        1 ggctttaaaa atctcattca caatggatgt acttttttct atagcgaaaa ctgtgtcaga
       61 tcttaaaaag aaggttgtag ttggaacaat ttatactaat gtagaagatg ttgtacaaca
      121 gacgaatgaa ttaattagaa ctttgaatgg aaacattttt catactggtg gcattggaac
      181 acagcctcag aaagagtgga attttcaact gccacaattg ggtacaactt tattaaattt
      241 ggatgataat tatgttcaat caactagagg tataatcgat tttttatcat cttttataga
      301 agccgtatgt gatgacgaaa ttgttagaga agcttcaaga aatggtatgc aacctcaatc
      361 accagctctt atattattat cttcatcaaa atttaaaaca attaatttta ataatagttc
      421 tcaatctatc aaaaattgga atgctcaatc aagacgtgag aatcctgtat atgagtataa
      481 aaatccaatg ttatttgaat ataaaaattc ttatatttta caacgcgcaa atccacaatt
      541 tggaagcgtc atgggtttaa gatattatac aacaagtaat acttgtcaaa ttgcagcatt
      601 tgattccacc ctagctgaaa atgcaccaaa caatacacag cgcttcgttt ataatggtag
      661 actaaaaaga cccatatcaa atgttttaat gaaaatagaa gctggtgctc caaatataag
      721 taacccaact attttacctg atcctaataa tcaaacaact tggcttttta atccggtaca
      781 attaatgaat ggaacattta ccattgaatt ctataataat ggtcaactaa ttgatatggt
      841 tcgaaatatg ggaatagtta ctgtaagaac ttttgattct tacagaataa caattgacat
      901 gattagacca gctgctatga ctcaatacgt tcaacgaatt tttccacaag gtggacctta
      961 tcattttcag gctacatata tgttaacatt aagcatatta gatgctacca cagagtccgt
     1021 tctatgtgat tctcactcag ttgaatattc aatagtagca aacgttagaa gagattcagc
     1081 gatgccagct ggaactgttt ttcaaccagg atttccatgg gaacacacat tatccaatta
     1141 cactgttgct caagaagata atttagagag attattgtta atcgcatctg tgaagagaat
     1201 ggtaatgtag ataagctaga agactaaaca tcttctatgc ggcctacata ccatgtagca
     1261 tgaatcacga ctgggtttag tctatgcttg cataggggca aatatgcatg atatggatga
     1321 tccccagaag gatgaaatgt gaactatgtg gct
//