From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: major inner capsid protein [porcine rotavirus, group C/Cowden,
Date: 6 Jan 93 07:10:39 GMT
Distribution: bionet
Checksum: 19009 4

LOCUS       S113505      1352 bp    RNA             VRL       04-DEC-1992
DEFINITION  major inner capsid protein [porcine rotavirus, group C/Cowden,
            Genomic RNA, 1352 nt]
ACCESSION   S44813 M94157
KEYWORDS    .
SOURCE      porcine rotavirus group C/Cowden
  ORGANISM  Unclassified.
            Unclassified.
REFERENCE   1  (bases 1 to 1352)
  AUTHORS   Cooke,S.J., Clarke,I.N., Freitas,R.B., Gabbay,Y.B. and Lambden,P.R.
  TITLE     The correct sequence of the porcine group C/Cowden rotavirus major
            inner capsid protein shows close homology with human isolates from
            Brazil and the U.K.
  JOURNAL   Virology 190, 531-537 (1992)
  STANDARD  full automatic
COMMENT     This entry [NCBI gibbsq 113505] was created by the journal scanning
            component of NCBI/GenBank at the National Library of Medicine.
            This sequence comes from Fig. 2.
FEATURES             Location/Qualifiers
     CDS             22..1209
                     /note="VP6;  For the protein sequence (NCBI gibbsq
                     113506):  Method: conceptual translation supplied by
                     author.  This sequence comes from Fig. 2."
                     /product="major inner capsid protein"
                     /codon_start=1
                     /translation="MDVLFSIAKTVSDLKKKVVVGTIYTNVEDIIQQTNELIRTLNGN
                     TFHTGGIGTQPQKEWNFQLPQLGTTLLNLDDNYVQATRSVIDYLASFIEAVCDDEIVR
                     EASRNGMQPQSPTLIALASSKFKTINFNNSSQSIKNWSAQSRRENPVYEYKNPMVFEY
                     RNSYILQRANPQYGNVMGLRYYTASNTCQLAAFDSTLAENAPNNTQRFIYNGRLKRPI
                     SNVLMKIEAGAPNINNLTILPDPTNQTTWLYNPDQLMNGTFTIEFYNNGQLVDMVRNM
                     GVVTVRTFDSYRITIDMIRPAAMTQYVQRLFPQGGPYPYQAAYMLTLSILDATTESVL
                     CDSHSVDYSIVANVRRDSAMPAGTVFQPGFPWEQTLSNYTVAQEDNLERLLLVASVKR
                     MVM"
BASE COUNT      451 a    246 c    255 g    400 t
ORIGIN      
        1 gcatttaaaa tctcattcac aatggatgtg cttttttcca ttgcgaaaac tgtttcagat
       61 ctcaaaaaga aagttgtagt tggtacaatt tataccaatg tggaagatat cattcaacag
      121 acaaatgaat tgattagaac cttaaatggc aatacatttc atactggtgg aattggaaca
      181 cagcctcaaa aagagtggaa ctttcaactt cctcaactgg gtacaactct gttaaattta
      241 gatgataatt atgtccaggc aactagaagt gtgattgatt atttagcatc atttatagaa
      301 gctgtatgtg atgatgaaat agttagagag gcttcaagaa atggaatgca acctcagtct
      361 ccaactctta tagcacttgc atcatcaaaa tttaagacta ttaattttaa taacagttct
      421 caatctatta agaattggag tgctcagtca aggcgtgaga atccagttta tgaatataaa
      481 aatcctatgg tctttgaata tagaaattca tatattcttc aacgtgctaa tccacaatat
      541 ggaaacgtca tgggattgag gtattataca gctagtaata catgtcaact tgcagctttt
      601 gactcaacac tcgctgaaaa tgcaccaaat aatactcaac gttttattta caatggaaga
      661 cttaagagac caatttctaa tgttttaatg aaaattgaag ctggtgctcc aaatattaat
      721 aatttgacaa tcttacctga cccaacaaat cagacgacat ggttatataa cccagatcag
      781 ctgatgaatg gaacattcac cattgaattt tataataacg gtcagctagt tgacatggtc
      841 aggaacatgg gagtggtcac cgttagaaca tttgattctt acagaattac tattgatatg
      901 ataagaccag cggctatgac tcaatatgtc cagagacttt tcccacaagg cggaccatat
      961 ccctaccaag ctgcatatat gctgacttta agtatactcg atgctactac agaatcagta
     1021 ctatgtgatt cacattcagt tgactactca attgttgcta acgttagaag agactcagca
     1081 atgccagctg gaacagtatt tcagccaggt tttccatggg aacaaactct atccaactac
     1141 actgttgctc aagaggataa tctagaaaga cttctacttg ttgcatccgt gaagagaatg
     1201 gtgatgtaga taagctagag atctaaccaa tctctatgtg gactactcac catgtagcat
     1261 gattcacgaa tgggtttagt ccatgcttgc gtaggggcaa atgcgcatga cgtggatgat
     1321 ccccaggagg atgaaatgtg aactatgtgg ct
//