From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Caenorhabditis elegans repeat regions and transposon insertion site
Date: 28 Aug 92 10:00:28 GMT
Distribution: bionet
Checksum: 59444     6

LOCUS       CELREPS02    1404 bp ds-DNA             INV       28-AUG-1992
DEFINITION  Caenorhabditis elegans repeat regions and transposon insertion site
            DNA sequence.
ACCESSION   L00588
KEYWORDS    insertion site; repeat units; satellite-related repeat;
            transposon Tc2.
SOURCE      Caenorhabditis elegans (library: RW7406) DNA.
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
            Rhabditina; Rhabditoidea; Rhabditidae.
REFERENCE   1  (sites)
  AUTHORS   Bazzicalupo,P., Ciaramella,M. and La Volpe,A.
  TITLE     Structure, evolution and properties of a novel repetitive DNA
            family in Caenorhabditis elegans
  JOURNAL   Nucleic Acids Res. 16, 8213-8231 (1988)
  STANDARD  full staff_review
REFERENCE   2  (bases 1 to 1404)
  AUTHORS   Ruvolo,V.R., La Volpe,A., Naclerio,G., Coulson,A. and Levitt,A.M.
  TITLE     Tandem repeats and SINE-like elements associated with insertion
            sites of the Tc2 transposon of C. elegans
  JOURNAL   Unpublished (1992)
  STANDARD  full staff_review
REFERENCE   3  (bases 1 to 1404)
  AUTHORS   Naclerio,G., Cangiano,G., Coulson,A., Levitt,A.M., Ruvolo,V.R. and
            LaVolpe,A.
  TITLE     Molecular evolution of clusters of satellite-like DNA sequences in
            Caenorhabditis elegans
  JOURNAL   J. Mol. Biol. (1992) In press
  STANDARD  full staff_review
FEATURES             Location/Qualifiers
     repeat_unit     310..350
                     /rpt_family="RcA1"
                     /rpt_type=dispersed
                     /note="partial"
                     /note="putative"
                     /citation=[2]
                     /citation=[3]
     misc_feature    408..409
                     /note="transposon Tc2-1 insertion site"
                     /note="putative"
                     /citation=[2]
     repeat_region   409..777
                     /rpt_family="Rc123"
                     /rpt_type=tandem
                     /rpt_unit=(409..531)
                     /note="contains 3 copies of Rc123"
                     /note="putative"
     repeat_region   441..495
                     /rpt_type=tandem
                     /rpt_unit=441..451
     repeat_region   564..618
                     /rpt_type=tandem
                     /rpt_unit=564..574
     repeat_region   687..741
                     /rpt_type=tandem
                     /rpt_unit=687..697
     repeat_region   778..917
                     /rpt_family="RcC9"
                     /rpt_type=tandem
                     /rpt_unit=(778..817)
                     /note="RcC9 contains heat shock consensus sequence
                     xGAAxxTTCx; can be grouped in units of 10 or 40; resembles
                     satellite repeats"
                     /note="putative"
                     /citation=[2]
                     /citation=[3]
                     /citation=[1]
     repeat_region   918..1137
                     /rpt_family="RcD1"
                     /rpt_type=tandem
                     /rpt_unit=(929..943)
                     /note="contains 14 copies of RcD1; resembles satellite
                     repeats"
                     /note="putative"
                     /citation=[2]
                     /citation=[3]
     repeat_region   1138..1404
                     /rpt_family="Rc35"
                     /rpt_type=tandem
                     /note="contains 7 copies of Rc35; resembles satellite
                     repeats"
                     /note="putative"
                     /citation=[2]
                     /citation=[3]
BASE COUNT      428 a    201 c    341 g    434 t
ORIGIN
        1 aggccttcat cgtagtttta atgtgaatgt gttagtctta ctttccttct cggaaaaagt
       61 taagaaagat aataataata acagaatctg aaaatatcaa caaaaaagaa ttaattatta
      121 ttattattta ttatggcctc cttctgatat ttttatttta acgtggatct cttatagcct
      181 aaacggcata tatcggcccc cgcccatcgc gcacacaaaa cagaggaacg cgcggaactc
      241 gcaaaatgtc gcacatgttg cagcatagtc tctgcacaca gcatacagta gttatggtat
      301 tgttatcaca aaacatcatt acctatatat aaaaaatagt gtccgtttgt taacaagtga
      361 cgtcatagct tacacaggca aggcgttttc ggctgttaaa gggatattag tttggggtta
      421 gtagggggat atggtcgggg tactgtagta gtactgtagg agtactgtag gagtacggta
      481 ggattactgt agttttggaa aaattgagtt tttgcctttt gaagagatat aggtttggag
      541 ttattagtgg gatatggtcg gggtactgta gtagtgctgt aggagtactg taggagtacg
      601 gtaggattac tgtagtttag gaaaaattaa gtttttgcct tttgaagaga tataggtttg
      661 gagttattag tgggatatgg tcggggtact gtagtagtac tgtaggagta ctgtaggagt
      721 actataggat tactgtagtt tgggaaaaat tgactttccg tctttggaag ggaaattgga
      781 aacttcggga aaattctgaa atgttccaga accttctggg aatttctgga aaattctaga
      841 atgttccaga accttctgaa aattcgaaaa aattctggat tgttctagaa ccttatggaa
      901 aatttaaaaa aatgttgctg cgagatcttc gtggcgagac ccatcgtggc gagacccgtc
      961 gtggcgagac ccgtcgtggc gagacccatc gtggtgagac ccatcgtggt gagacccatc
     1021 gaggtgagac ccatcgtggt gagacccatc gtggtgagac ccatcgtggt gagacctatc
     1081 gtggtgagac ccatcgtggt gagacccatc gtggtgagac ccaccgtggt aagacccaaa
     1141 attttggcgg gaaatttaaa ttttctgtga aaaatatttt ggcgggaaat ttaaattttc
     1201 tgaaaaaaat attttggagg gaaatttaaa ttttctgaaa aaaacatttt ggaggaaaat
     1261 ttaaattttc tgagaaaaat attttggcgg gaaatttaaa ttttctgtga aaaatatttt
     1321 ggcgggtaat ttaaattttc tgaggaaaaa attttggagg gaaatttaaa ttttctaaaa
     1381 attctaaaat tctggaaatc taga
//