From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Cauliflower mosaic virus movement protein gene, aphid transmission
Date: 31 Jul 92 10:01:45 GMT
Distribution: bionet
Checksum: 29350    15

LOCUS       MCACOMGEN    8033 bp ds-DNA             VRL       31-JUL-1992
DEFINITION  Cauliflower mosaic virus movement protein gene, aphid transmission
            protein gene, DNA binding protein gene, capsid protein gene,
            reverse transcriptase gene, inclusion body matrix protein gene,
            complete cds.
ACCESSION   M90543
KEYWORDS    DNA binding protein; aphid transmission protein; capsid protein;
            inclusion body matrix protein; movement protein;
            reverse transcriptase.
SOURCE      Cauliflower mosaic virus (individual_isolate CMV-1) DNA.
  ORGANISM  Cauliflower mosaic virus
            Viridae; ds-DNA nonenveloped viruses; Caulimovirus.
REFERENCE   1  (bases 1 to 8033)
  AUTHORS   Melcher,U.K. and Chenault,K.D.
  TITLE     Fonts for the display of nucleotide and amino acid sequences:
            application to cauliflower mosaic virus
  JOURNAL   Unpublished (1993)
  STANDARD  full automatic
FEATURES             Location/Qualifiers
     CDS             364..1347
                     /product="movement protein"
                     /codon_start=1
                     /translation="MDLYPEENTQSEQSHNSENNMQIFKSENSDGFSSDLMISNDQLK
                     NISKTQLTLEKEKIFKMPNVLSQVMKKAFSRKNEILYCVSTKELSVDIHDATGKVYLP
                     LITKEEITKRLSSLKPEVRKTMSMVHLGAVKILLKAQFRNGIDTPIKIALIDDRINSR
                     KDCLLGAAKGNLAYGKFMFTVYPKFGISLNTQRVNQTLSLIHDFENKNLMNKGDKVMT
                     ITYIVGYALTNSHHSIDYQSNATIELEDVFQEIGNVQQSDFCTIQNDECNWAIDIAQN
                     KALLGPKTKSQIGNSLQIGNSASSSNTENELARVSQNIDLLKNKLKEICGE"
     CDS             1349..1828
                     /product="aphid transmission protein"
                     /codon_start=1
                     /translation="MSITGQPHVYKKDTIIRLKPLSLNSNNRSYVFSSSKGNIQNIIN
                     HLNNLNEIVGRSLLGIWKINSYFGLSKDPSESKSKNPSVFNTAKTIFKSGGVDYSSQL
                     KEIKSLLEAQNTRIKNLEKAIQSLDNKIEPEPLTKKEVKELKESINSIKEGLKNIIG"
     CDS             1830..2219
                     /product="DNA binding protein"
                     /codon_start=1
                     /translation="MANLNQIQKEVSEVRSVQKSMKADIKAILELLGSQNPTKESLEA
                     VAAKIVNDLTKLINDCPCNKEILEALGNQPKEQLIEQPKEKGKGLNLGKYSYPNYGVG
                     NEELGSSGNPKALTWPFKAPAGWPNQF"
     CDS             2201..3670
                     /product="capsid protein"
                     /codon_start=1
                     /translation="MAESILDRTINRFWYNLGEDCLSESQFDLMIRLMEESLDGDQII
                     DLTSLPSDNLQVEPVMTTTDDSISEEESEFLLAIGETSEDESDSGEEPEFEQVRMDRT
                     GGTEIPKEEDGEPSRYNERKRKTTEGRYFPTQPKTIPGQKQTSMGMLNIDCQTNRRTL
                     IDDWAAEIGLIVKTNREDYLDPETILLLMEHKTSGIPKELIRNTRWNRTTGDIIEQVI
                     DAMYTMFLGLNYSDNKVAEKIDEQEKAKIRMTKLQLCDICYLEEFTCDYEKNMYKTEL
                     ADFPGYINQYLSKIPIIGEKALTRFRHEANGTSIYSLGFAAKIVKEELSKICDLSKKQ
                     KKLKKFNKKCCSIGEASAEYGCKKTSTKKYHKKRYKKKYKVYKPYKKKKKFRSGKYFK
                     PKEKKGSKQKYCPKGKKDCRCWICNIEGHYANECPNRQSSEKAHILQQAEKLGLQPIE
                     EPYEGVQEVFILEYKEEEEETSTEESDDESSTSEDSDSD"
     CDS             3630..5672
                     /product="reverse transcriptase"
                     /codon_start=1
                     /translation="MMNHLLLKTQTQTEQVMNVTNPNSIYIKGRLYFKGYKKIELHCF
                     VDTGASLCIASKFVIPEEHWVNAERPIMVKIADGSSITISKVCKDIDLIIAGEIFKIP
                     TVYQQESGIDFIIGNNFCQLYEPFIQFTDRVIFAKNKSYPVHIANVTRAVRVGTEGFL
                     ESMKKRSKTQQPEPVNISTNKIENPLEEIAILSEGRRLSEEKLFITQQRMQKIEELLE
                     KVCSENPLDPNKTKQWMKASIKLSDPNKAIKVKPMKYSPMDREEFDKQIKELLDLKVI
                     KPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGK
                     KIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAF
                     RVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLG
                     LEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAK
                     LKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIK
                     INEGINTELICRYASGSFKAAERNYHSNDKETLAVINTIKKFSIYLTPAHFLTRTDNT
                     HFKSFVNLNYKGDSKLGRNIRWQAWLNHYSFDVEHIKGTDNHFVDFLSREFNKVNS"
     CDS             5776..7338
                     /product="inclusion body matrix protein"
                     /codon_start=1
                     /translation="MENIEKLIMQEKILMLELDLVRAKISLARANGSSQQGDLPLHRE
                     TPVKEEAVHSALATFTPTQVKAIPEQTAPGKESTNPLMVSILPKDMNPVQTGIRLTVP
                     GDFLRPHQGIPIPQKSELSSTVAPLRAESGIQHPHINYYVVYNGPHAGIYDDWGCTKA
                     ATNGVPGVAHKKFATITEARAAADAYTTSQQTDRLNFIPKGEAQLKPKSFAKALTSPP
                     KQKAHWLTLGTKRPSGDPGPKEISFAPEITMDDFLYLYELGRKFDGEGDDTMFTTDNE
                     KISLFNFRKNADPQMVREAYAAGLIKTIYPSNNLQEIKYLPKKVKDAVKRFRTNCIKN
                     TEKDIFLKFRSTIPVWTIQGLLHKPRQVIEIGVSKKVVPTESKAMESKIQIEALTELA
                     VKTGEQFIQSLLRLNDKKKIFVNMVEHDTLVYSKNIKDTVSEDQRAIETFQQRVISGN
                     LLGFHCPAICHFIERTVEKEGGSYKCHHCDKGKAIVQNASADSGPKDGSPPTRSIVEK
                     GDVPTTSSKQVD"
BASE COUNT     2925 a   1658 c   1572 g   1878 t
ORIGIN
        1 ggtatcagag ccatgaatcg gtttaagacc aaaattcaag agggtaaaac ctcatcaaaa
       61 tacgaaagag ttcttaactc taaagataaa agatctttca agatcgaaca tagttccctc
      121 acaccggtga ccgacaggtt taccaccgta aggtttcaga acaacatcga aagcgtttac
      181 gccaacttcg actctcagct caagtcgtcg tacgatggta gatctaaaaa gatcaagaat
      241 ctaagcctta aaaatcttag atgctacgaa gccttcctca ggaagtacct tctggaacaa
      301 taaatctctc tgagaatagt actctattga gtatccacag ataaaataat tttctgtgtt
      361 gagatggatt tgtatccaga agaaaatacc caaagcgagc aatcgcataa ttctgaaaat
      421 aatatgcaaa tatttaaatc agaaaattcg gatggattct cctccgatct aatgatctca
      481 aacgatcaat taaaaaatat ctctaaaacc caattaactt tggaaaaaga aaagatattt
      541 aaaatgccta acgttttatc tcaagttatg aaaaaagcgt ttagcaggaa aaacgagatt
      601 ctctactgcg tctcgacaaa agaattatca gtggacattc acgatgccac aggtaaggta
      661 tatcttcctt taatcactaa ggaggagata actaaaagac tttccagctt aaaacctgaa
      721 gtcagaaaga ccatgtccat ggttcatctt ggagcggtca aaatattgct taaagctcaa
      781 tttcgaaatg ggattgatac cccaatcaaa attgctttaa tcgatgatag aatcaattct
      841 agaaaagatt gccttctcgg tgcagccaaa ggtaatctag catacggtaa gtttatgttt
      901 actgtatacc ccaagtttgg aataagcctt aatacccaaa gagttaacca aaccttaagc
      961 cttattcatg attttgagaa taaaaatctt atgaataaag gtgataaagt tatgaccata
     1021 acctatatcg taggatatgc attaactaat agtcatcata gcatagatta tcaatcgaat
     1081 gctacaattg aactagaaga cgtatttcaa gaaattggaa atgtccagca atctgatttt
     1141 tgtacaatac aaaatgacga atgcaattgg gccattgata tagcccaaaa caaagcctta
     1201 ttaggtccta aaaccaaatc ccaaattggt aatagtcttc aaataggaaa cagtgcttca
     1261 tcctctaata ctgaaaatga attagctagg gtaagccaga acatagatct tttaaagaat
     1321 aaattaaaag aaatctgtgg agaataaaat gagcattacg ggtcaaccgc atgtttataa
     1381 aaaagatact attattagac taaaaccatt gtctcttaat agtaataata gaagttatgt
     1441 ttttagttcc tcaaaaggga acattcaaaa tataattaat catcttaaca acctcaatga
     1501 gattgtagga agaagcttac tcggaatatg gaagatcaac tcatacttcg gcttaagcaa
     1561 agacccctcg gagtccaaat caaaaaaccc gtcagttttt aatactgcaa aaaccatttt
     1621 taagagtggg ggggttgatt actcgagcca attaaaggaa ataaaatctc ttttagaagc
     1681 tcaaaacact agaattaaaa atctagaaaa agcaattcaa tccttagata ataagattga
     1741 accagagccc ttaactaaaa aagaagttaa agagctaaaa gaatcgatta actcgatcaa
     1801 agaaggatta aagaatatta ttggctgaaa tggctaatct taatcaaatc caaaaagaag
     1861 tctctgaagt ccgcagtgtc caaaaatcca tgaaagcgga tataaaagct atcttagaat
     1921 tgctaggatc ccaaaatcct actaaagaaa gcttagaagc cgttgcagcg aaaatcgtta
     1981 atgacttaac caagctcatc aatgattgtc cttgtaacaa agagatatta gaagccttag
     2041 gaaatcagcc taaagagcaa ctaatagaac aacctaaaga aaaaggtaaa ggccttaatc
     2101 taggaaaata ttcttacccc aattacggcg taggaaatga agaattagga tcctctggaa
     2161 accctaaagc tttaacttgg cccttcaaag ctccagcagg atggccgaat caattttaga
     2221 caggaccatt aaccggttct ggtataatct gggagaagat tgtctctcag aaagtcaatt
     2281 cgatcttatg ataaggttaa tggaagagtc ccttgacggg gaccaaatta ttgatctaac
     2341 ctctctacct agtgataact tgcaggtcga accagttatg acaactaccg acgactcgat
     2401 ctcggaagaa gaatcagaat tccttctagc aataggagaa acatctgaag acgaaagcga
     2461 ttcaggagaa gaacctgaat tcgaacaagt tcgaatggat cgaacaggag gaacggagat
     2521 tcccaaagaa gaagatggtg aaccatctag atacaatgag agaaagagaa agaccacgga
     2581 aggccggtac tttccaactc aaccaaagac cattccagga caaaagcaaa cgtctatggg
     2641 aatgctcaac attgactgcc aaaccaatcg aagaacctta atcgatgatt gggcagcaga
     2701 aatcggactg atagtcaaga ccaacagaga agactatctt gatccagaaa caatactact
     2761 cttgatggaa cacaaaacat caggaatacc gaaggagtta atccgaaata caagatggaa
     2821 ccgcactacc ggagatatca tagaacaggt gatcgatgcg atgtacacca tgttcttagg
     2881 acttaactac tccgacaaca aggttgctga aaagatagac gagcaagaga aggccaagat
     2941 cagaatgacc aagctccagc tctgcgacat ctgctacctt gaagaattta catgtgatta
     3001 cgaaaagaac atgtacaaga cggaactggc ggatttccca ggatacatca accagtacct
     3061 gtcaaaaatc cccatcatag gagaaaaagc gctaacacgc tttaggcatg aagctaacgg
     3121 aaccagcatc tacagcttag gtttcgcggc gaagatagta aaagaagaac tatctaaaat
     3181 ctgcgactta tccaagaagc agaagaagtt gaagaaattc aacaagaagt gttgcagcat
     3241 cggagaagct tcagcagaat atggatgtaa gaagacatct accaagaagt atcacaagaa
     3301 gcgatacaag aaaaaatata aggtctataa accttataag aagaagaaga aattccgatc
     3361 aggaaaatac ttcaagccca aagaaaagaa gggctcaaag caaaagtatt gcccaaaagg
     3421 caagaaagat tgcagatgtt ggatctgcaa tatcgaaggc cattacgcca acgaatgtcc
     3481 taatcgacaa agctcggaga aggctcacat ccttcaacaa gcagaaaagt tgggcctcca
     3541 gcccattgaa gaaccctatg aaggagttca agaagtattc atcttagaat acaaagaaga
     3601 ggaagaagaa acctctacag aagaaagcga tgatgaatca tctacttctg aagactcaga
     3661 ctcagactga gcaggtgatg aacgtcacca atcccaattc gatctacatc aagggcagac
     3721 tctacttcaa aggatacaag aagatagagc ttcactgttt tgtagatacg ggagcaagct
     3781 tatgcatagc atccaagttc gtcataccag aagaacattg ggttaatgca gaaagaccaa
     3841 taatggtcaa aatagcagat ggaagctcaa tcaccatcag caaagtctgc aaagacatag
     3901 acttgatcat agccggcgag atattcaaaa ttcccaccgt ctatcagcaa gaaagtggca
     3961 tcgatttcat aatcggcaac aacttttgtc agctgtatga accattcata cagtttacag
     4021 atagagttat cttcgcaaag aacaagtcct atcctgttca tattgcgaac gtaacaagag
     4081 cagtgcgagt aggcaccgaa ggatttcttg aatcaatgaa gaaacgttca aagactcaac
     4141 aaccggagcc agtgaacatt tctacaaaca agatagaaaa tccacttgaa gaaattgcta
     4201 ttctttcaga ggggaggagg ttatcagaag aaaaactctt catcactcaa caaagaatgc
     4261 aaaaaatcga agaactactt gagaaagtat gttcagaaaa tccattagat cctaacaaga
     4321 ctaagcaatg gatgaaagct tcaatcaagc ttagcgaccc aaacaaagct atcaaggtta
     4381 aacccatgaa gtatagccca atggatcgtg aagaatttga caagcaaatc aaagagttac
     4441 tggaccttaa agtcattaag cccagtaaaa gccctcacat ggcaccagcc ttcttggtca
     4501 acaacgaagc cgagaagcga agaggaaaga aacgtatggt agtcaactac aaagctatga
     4561 acaaagccac cgtaggagac gcatacaatc ttcccaacaa agacgagtta cttacactca
     4621 ttcgaggaaa gaagatcttc tcttccttcg actgtaagtc cggattctgg caagttctac
     4681 ttgatcaaga atcaagacct ctaacggcgt tcacatgccc acaaggtcac tacgaatgga
     4741 atgtggtccc tttcggccta aagcaggcac catccatatt ccagagacac atggacgaag
     4801 catttcgtgt gttcagaaag ttctgttgcg tttatgtcga tgacattctc gtattcagta
     4861 acaacgaaga agatcaccta cttcatgtag caatgatctt acaaaagtgt aatcaacatg
     4921 gaattatcct ttccaagaag aaagcgcaac tcttcaagaa gaagataaac ttccttggtc
     4981 tagaaataga tgaaggaaca cacaagcctc aaggacatat cttggaacat atcaacaaat
     5041 tcccagatac ccttgaagac aagaagcaac ttcagagatt cttaggcatc ctaacatatg
     5101 cctctgatta tattccgaag ctagctcaaa tcagaaagcc tctgcaagcc aagcttaaag
     5161 agaatgttcc atggaaatgg acaaaagagg acaccctcta catgcaaaag gtgaagaaaa
     5221 atctgcaagg atttcctcca ctacatcatc ccttaccaga ggagaagctg atcatcgaga
     5281 ccgacgcatc agatgactac tggggaggta tgttaaaagc tatcaaaatt aacgaaggta
     5341 ttaatactga gttaatttgc agatacgcat ctggaagctt taaagctgca gaaaggaatt
     5401 accacagcaa tgacaaagag acactggcgg taataaatac tataaagaaa ttcagtatct
     5461 atctaactcc tgctcatttc ctgaccagaa cagataatac tcatttcaag agttttgtta
     5521 accttaatta caaaggtgat tcaaaacttg gaagaaacat cagatggcaa gcatggctta
     5581 accactattc atttgatgtt gaacatatta aaggaaccga caaccacttt gtggacttcc
     5641 tttcaagaga attcaataag gttaattcct agttgaaatc cgaagataag attcccacac
     5701 acttgtggct gatatcaaaa ggctactgcc tatataaaca catctctgga gactgagaaa
     5761 atcagacctc caagcatgga gaacatagaa aaactcatca tgcaagagaa aatactaatg
     5821 ctagagctcg atctagtaag agcaaaaata agcttagcaa gagctaacgg ctcttcgcaa
     5881 caaggagacc tccctctcca ccgtgaaaca ccggtaaaag aagaagcagt tcattctgca
     5941 ctggccactt ttacgccaac tcaagtaaag gctattccag agcaaacggc tcctggtaaa
     6001 gaatcaacaa atccgttgat ggttagtatc ttgccaaaag atatgaaccc agttcaaact
     6061 gggataaggc ttacagtgcc aggggacttt ttacgtcctc atcagggaat tccaatccca
     6121 caaaaatctg agcttagcag cacagttgct cctctcagag cagaatcggg tattcaacac
     6181 cctcatatca actactacgt tgtgtataac ggtccacacg ccggtatata tgatgactgg
     6241 ggttgtacaa aggcggcaac aaacggcgtt cccggagttg cacacaagaa gtttgccact
     6301 attacagagg caagagcagc agctgacgcg tacacaacaa gtcagcaaac agacaggttg
     6361 aacttcatcc ccaaaggaga agcccaactc aagcccaaga gctttgcgaa ggccttaacc
     6421 agcccaccaa agcaaaaagc ccactggctc acgctaggaa ccaaaaggcc cagcggtgat
     6481 ccaggcccaa aagagatctc ctttgccccg gagatcacaa tggacgattt cctctatctt
     6541 tacgaacttg ggaggaagtt cgacggagaa ggtgacgata ccatgttcac cactgataat
     6601 gagaagatta gcctcttcaa tttcagaaag aatgctgacc cacagatggt tagagaggcc
     6661 tacgcagcag gtctcatcaa gacgatctac ccgagtaata atctccagga gatcaaatac
     6721 cttcccaaga aggttaaaga tgcagtcaaa agattcagga ctaactgcat caagaacaca
     6781 gagaaagata tatttctcaa gttcagaagt actattccag tatggacgat tcaaggcttg
     6841 cttcataaac caaggcaagt aatagaaatt ggagtctcta agaaagtagt tcctactgaa
     6901 tcaaaggcca tggagtcaaa aattcagatc gaggctctaa cagaactcgc cgtgaagact
     6961 ggcgaacagt tcatacagag tcttttacga ctcaatgaca agaagaaaat cttcgtcaac
     7021 atggtggagc acgacactct cgtctactcc aagaatatca aagatacagt ctcagaagac
     7081 caaagggcta ttgagacttt tcaacaaagg gtaatatcgg gaaacctcct cggattccat
     7141 tgcccagcta tctgtcactt catcgaaagg acagtagaga aggaaggtgg ctcctacaaa
     7201 tgccatcatt gcgataaagg aaaggctatc gttcaaaatg cctctgccga cagtggtccc
     7261 aaagatggat ccccacccac gaggagcatc gtggaaaaag gagacgttcc aaccacgtct
     7321 tcaaagcaag tggattgatc tcacatctcc actgacgtaa gggatgacgc acaatcccac
     7381 tatccttcgc aagacccttc ctctatataa ggaagttcat ttcatttgga gaggacacgc
     7441 tgaaatcacc agtctctctc tacaaatcta tctctctcta ttttctccgt aataatgtgt
     7501 gagtagttcc cagataaggg aattagggtt cttatagggt ttcgctcatg tgttgagcat
     7561 ataagaaacc cttagtatgt atttgtattt gtaaaatact tctatcaata aaatttctaa
     7621 ttcctaaaac caaaatccag tactaaaatc cagatctcct aaagtcccta tagatctttg
     7681 tcgtgaatat aaaccagaca tgagacgact aaacctggag cccagacgcc gttcgaagct
     7741 agaagtaccg cttaggcagg aggccgttag ggaaaagatg ctaaggcagg gttggttacg
     7801 ttgactcccc tgtaggtttg gtttaaatat gatgaagtgg acggaaggaa ggaggaagac
     7861 atggaaggat aaggttgcag gccctgtgca aggtaagaag atggaaattt gatagaggta
     7921 cattactata cctatactat aagctgaggg aatcgttgtt tttaccctat atcatctaat
     7981 aaccccttat cgatttaaag aaataatccg cataagcccc caaacaaaaa att
//