From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Cucumber mosaic virus (CMV) satellite RNA, complete sequence.
Date: 9 Apr 92 10:04:02 GMT
Distribution: bionet
Checksum: 63923     5

LOCUS       MCVYSAT1      369 bp ss-RNA             VRL       09-APR-1992
DEFINITION  Cucumber mosaic virus (CMV) satellite RNA, complete sequence.
ACCESSION   D00542
KEYWORDS    .
SOURCE      Cucumber mosaic virus (strain Y), cDNA to satellite RNA.
  ORGANISM  Cucumber mosaic virus
            Viridae; ss-RNA nonenveloped viruses; Isometric ss-RNA viruses;
            Cucumovirus.
REFERENCE   1  (bases 1 to 369)
  AUTHORS   Hidaka,S., Ishikawa,K., Takanami,Y., Kubo,S. and Miura,K.
  TITLE     Complete nucleotide sequence of RNA 5 from cucumber mosaic virus
            (strain Y)
  JOURNAL   FEBS Lett. 174, 38-42 (1984)
  STANDARD  full staff_review
REFERENCE   2  (bases 85 to 349)
  AUTHORS   Kaper,J.M., Duriat,A.S. and Tousignant,M.E.
  TITLE     The 368-nucleotide satellite of cucumber mosaic virus strain Y from
            Japan does not cause lethal necrosis in tomato
  JOURNAL   J. Gen. Virol. 67, 2241-2246 (1986)
  STANDARD  full staff_review
REFERENCE   3  (sites)
  AUTHORS   Masuta,C., Kuwata,S. and Takanami,Y.
  TITLE     Effect of extra 5' non-viral bases on the infectivity of
            transcripts from a cDNA clone of satellite RNA (strain Y) of
            Cucumber mosaic virus
  JOURNAL   J. Biochem. 104, 841-846 (1988)
  STANDARD  full staff_review
REFERENCE   4  (bases 1 to 369)
  AUTHORS   Devic,M., Jaegle,M. and Baulcombe,D.
  TITLE     Symptom production on tobacco and tomato is determined by two
            distinct domains of the satellite RNA of cucumber mosaic virus
            (strain Y)
  JOURNAL   J. Gen. Virol. 70, 2765-2774 (1989)
  STANDARD  full staff_review
REFERENCE   5  (bases 1 to 369)
  AUTHORS   Masuta,C. and Takanami,Y.
  TITLE     Determination of sequence and structural requirements for
            pathogenicity of a cucumber mosaic virus satellite RNA (Y-satRNA)
  JOURNAL   Plant Cell 1, 1165-1173 (1989)
  STANDARD  full staff_review
COMMENT     These data kindly submitted in computer readable form by:
            Martine J. Devic
            The Sainsbury laboratory
            John Innes Institute
            Colney lane
            Norwich NR4 7 UH
            U.K.
            Phone: (0603) 52571
            Telex: 975122(JIINOR G)
            Fax:   (0603)56844
            To localize the active domains of the Y satellite RNA, recombinant
            RNA molecules were prepared in [4].  The determinant for symptom
            production on tabacco lies in the region between nucleotides 1 and
            219.  The domain for necrotic symptoms on tomato resides on the 3'
            half of the molecule beyond nucleotide 219.  The cDNA clone was
            short of the full length by 6 nucleotides at the 5' end.   The
            missing Y satellite RNA sequence was known in [1].
            [3]  sites.
FEATURES             Location/Qualifiers
     old_sequence    161
                     /note="replace(161, 'c')"
                     /citation=[2]
                     /citation=[4]
                     /citation=[5]
                     /citation=[3]
                     /citation=[1]
     old_sequence    167
                     /note="replace(167, 'c')"
                     /citation=[2]
                     /citation=[4]
                     /citation=[5]
                     /citation=[3]
                     /citation=[1]
     old_sequence    173
                     /note="replace(173, 'c')"
                     /citation=[2]
                     /citation=[4]
                     /citation=[5]
                     /citation=[3]
                     /citation=[1]
     old_sequence    234
                     /note="replace(234, '')"
                     /citation=[2]
                     /citation=[4]
                     /citation=[5]
                     /citation=[3]
                     /citation=[1]
BASE COUNT       73 a     84 c    110 g    102 t
ORIGIN      5' end of the satellite RNA.
        1 gttttgtttg atggagaatt gcgtagaggg gttatatctg cgtgaggatc catcactcgg
       61 cggtgtggga tacctccctg ctaaggcggg ttgagagtgt atctcggact ggaggcggga
      121 tgtctgcggg tgttccgtct gctgcccacg atggtgggag tcacccaagg ggtgactttt
      181 tcagctctgc atttctcatt tgagcccccg ctcagtttgc tagcaaaacc cggcacatgg
      241 ttcgccgtta ctatggattt cgaaagaaac actctgttag gtggtatcgt ggatgacgca
      301 cgcagggaga agctaaggct tatgctatgc tgatctccgt gaatgtctat acattcctct
      361 acaggaccc
//