From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: B.pertussis fhaD, fhaA and fhaE genes
Date: 25 Jul 92 10:02:45 GMT
Distribution: bionet
Checksum: 05755    11

LOCUS       BPEACCG      5441 bp ds-DNA             BCT       25-JUL-1992
DEFINITION  B.pertussis fhaD, fhaA and fhaE genes
ACCESSION   X66729
KEYWORDS    accessory genes.
SOURCE      Bordetella pertussis DNA.
  ORGANISM  Bordetella pertussis
            Prokaryotae; Gracilicutes; Scotobacteria; Aerobic rods and cocci;
            Alcaligenaceae.
REFERENCE   1  (bases 1 to 5441)
  AUTHORS   Locht,C., Geoffroy,M. and Renauld,G.
  TITLE     Common accessory genes for the Bordetella pertussis filamentous
            hemagglutinin and fimbriae share sequence similarites with the PAP
            C and PAP D gene families
  JOURNAL   Unpublished (1992)
  STANDARD  full automatic
COMMENT     *source: strain=Tohama I;
            From EMBL    entry BPACCG;  dated 26-JUN-1992.
FEATURES             Location/Qualifiers
     misc_feature    52
                     /note="start of transcription"
                     /evidence=EXPERIMENTAL
     misc_feature    194
                     /note="start of transcription"
                     /evidence=EXPERIMENTAL
     CDS             758..1492
                     /product="filamentous hemagglutinin"
                     /gene="FhaD"
                     /codon_start=1
                     /translation="MARWRRRLGVAALGAAMLASLAPAARASLVITGTRVIYNAGSPE
                     TTVKMSNEGQAPALMQAWIDDGNAEAKPDEVQVPFFLTPPLARVDPGKGQTLRIFFNG
                     YPDGKTLPSDRESVFWLNVLEVPPKATPEEGHGVLQLTIRSRLKLFYRPKGLSGNPLT
                     AAADLTFKRKPNGVLEVHNPTPYYVNLQKLEVGENGAHGSKTPWMLAPLSSDELRLKG
                     TGAKSVQYWAIDDFGGVTPYQAAIAD"
     CDS             1555..4176
                     /product="filamentous hemagglutinin"
                     /gene="FhaA"
                     /codon_start=1
                     /translation="MKQIPLILAMSLAFAAAAKGESAPDMQAAVNFDSAMLWGGANGA
                     DLSRFNYSNALRPGNYIVDIYANNYPLIRQQVRFVAAQTSGQGLKTAPAVACFTYGQL
                     EAMQVRLRALDPALVADLKSSGRCEVLGKLFPDSRESFDFGENRLEVSIPQAYTINRF
                     RRDISPDEWDSGITAFRLGYQYNYADYIGGLRAGRRLDLNLYSGFNFKGWYLRNSSTL
                     GWGQGRFTRRSQRTSLQTDIPSWRARLVFGDVFSSGEYFAPYSMRGMLVGSDTAMLPY
                     SERLYRPTIRGVARTRANVKVYQAGVLVFQDAVPPGPFAIDDYSPASYGGDLRVVVTE
                     ANGAVQTFTVPYASAVRLILPGQTQWSFSAGRYRNYRNDGQDRPWVTQLTGRHGVADG
                     VNLYGGLLIAQAYQAGLAGLSWNTPWGAMAADATLSRSQLSTTGNANGSSLRFSYSKT
                     LSGTNTAIRLATLRYSSSGFWNFADAVNAGPVETNGRNGRFGLYSLLGRERPRGDFSV
                     TLSQPLGGYGSLYVSALRRTYWGSSRVDQQTQLGYSTQVGRVGVNLDVSRTENRRSTE
                     HQVMLNLSIPLYGATSSGVVTGSLARTGSAPVQQSVNYSGMSGERDQYTYGLGVQRAG
                     TSAQYALNGSWSGTYGEVSGQLTHGRSYSQYQINGSGGLVAHAGGVTFGQYQAGTIGL
                     IQAEAAAGAKVVNTRNAAVDRSGYGLVSLTPYSLNEVELSPQDLPLDVQLESTVEQVI
                     PRAAAVVALRFPTRHDVAAMLVAEPGSEGALVFGTEVRDGAGKVVGVAGQGASALVRG
                     VSASGTLEVTRADGSICRATYDLKSAGQAVHGLPRIALACAPQGGGERGARAAGQAVA
                     QPSAISISGKDHEPDIR"
     CDS             4157..5287
                     /product="filamentous hemagglutinin"
                     /gene="FhaE"
                     /codon_start=1
                     /translation="MSQIFADRRAAVPARVISFCGAALAVWAGLAVQPAMAVDPPVDC
                     GRALGLHFWSSASLISDQTPDGTLIGKPVVGRSLLSKSCKVPDDIKEDLSDNHDGEPV
                     DIVLELGSNYKIRPQSYGHPGIVVDLPFGSTEETGIAIYIDFGSSPMQKVGERQWLYP
                     QKGEVLFDVLTINGDNAEVRYQAIKVGPLKRPRKLVLSQFPNLFTYKWVFMRGTSQER
                     VLAQGTIDTDVATSTIDLKTCRYTSQTVSLPIIQRSALTGVGTTLGMTDFQMPFWCYG
                     WPKVSVYMSATKTQTGVDGVALPATGQAAGMASGVGVQLINGKTQQPVKLGLQGKIAL
                     PEAQQTESATFSLPMKAQYYQTSTSTSAGKLSVTYAVTLNYD"
BASE COUNT      935 a   1723 c   1860 g    923 t
ORIGIN
        1 tcgcggcctg ccgcggctcg gcgcatgggg attcgcaggg ttctcatgcg ccggccaatg
       61 ccggatagcg gtgcaattgc cgaccatttc gcgcaccgcg ctcaaggacg tagggtcgac
      121 ggcaggcggg acagtttttg acgtgaaact gaccgagtgt ccgcaggcat tgaatggtca
      181 gcaagtggga ttgttcttcg aatctggtgg cacggttgac tatacgtcgg gaaacctgtt
      241 tgcgtatcgg gccgatagtc agggcgtcga acaggtaccg cagacgaaag ccgacaacgt
      301 gcaagccaat ctggatggtt ccgctattca tttgggccgc aacaagggtg cgcaggctgc
      361 tcagacgttt ctggtatcgc agacggctgg gtcgtcgacg tacggggcga ccctgcgcta
      421 tctggcatgc tacatccgtt cgggcgctgg ttccattgtt gcggggaatc tccgcagtca
      481 ggtggggttc tccgtgatgt atccgtagcc cgtgaaagag gggtcaccca ctgcgggggg
      541 ccccggtacg ggatggtcgg cttgtcacga gattcttgtt ttccatttct ttcttttcac
      601 tcggtcgcag cgccggcttg atgcatgcaa agcatcgata gctacgaacg gccgcgattc
      661 ttgaatcatg aatacatacg cttgtgacgg ggcgctcgcg cagagccggc cccagggatg
      721 gtttacgcct gcatttacgg taaagcggca aggcggcatg gcgcgctggc gccggcggct
      781 gggcgtcgcg gcgctgggcg ccgccatgct ggcgagcctg gcgccggccg cccgggccag
      841 cctcgtcatc acgggtacgc gcgtgatcta caacgcgggc tcgcccgaga ccacggtgaa
      901 gatgagcaac gaggggcagg cccccgcgct gatgcaggca tggatcgatg acggcaatgc
      961 cgaggcgaag ccggacgaag tccaggtgcc gttcttcctg acgcctccgc tggcgcgggt
     1021 ggacccgggc aaggggcaga ccttgcgcat tttcttcaat ggctacccgg atggcaagac
     1081 gctgccgtcc gaccgcgaat cggtcttctg gctgaacgtt ctcgaagtgc cgcccaaggc
     1141 gacgcccgag gaaggccacg gggtcctgca gctgaccatc cgctcgcgcc tgaagctgtt
     1201 ctatcggccc aagggcctgt ccggcaaccc gctgacggcc gccgccgacc tgaccttcaa
     1261 gcgcaagccc aacggcgtgc tggaggtgca caacccgacg ccgtactacg tgaacctgca
     1321 aaaactggag gtgggcgaga acggcgcgca cggcagcaag acgccgtgga tgctggcgcc
     1381 gctttcctcg gacgagctgc gcctgaaagg gacgggggcc aagtcggtgc agtactgggc
     1441 catcgacgac ttcggcggcg tgacgccata tcaggcggcc atagcggact gacaagacgg
     1501 gggcaccggg actggcgcgc gtcatgggga cgttgccgaa accgacgctg aatcatgaaa
     1561 cagataccac tgattctcgc gatgagcctt gccttcgccg ccgcggcgaa gggcgaatcc
     1621 gcgccggata tgcaggcggc ggtcaacttc gactcggcca tgctgtgggg cggcgccaat
     1681 ggcgcggatc tgagccgatt caactacagc aacgcgctgc ggccgggcaa ctacatcgtc
     1741 gacatttacg ccaacaacta tccgctgatc cggcagcagg ttcgattcgt cgcggcgcag
     1801 acgtccgggc agggcttgaa gacggcgccg gcggtggcgt gtttcaccta tggccagctg
     1861 gaagcgatgc aggtccggct gcgcgcgctc gatccggcct tggtcgccga cctcaaatcc
     1921 agcgggcgct gcgaggtgct gggcaagctg ttcccggata gccgcgagtc gttcgatttc
     1981 ggcgagaacc gcctggaagt cagcattccg caagcctata cgatcaaccg cttccggcgc
     2041 gacatctcgc ccgatgagtg ggatagcggc attactgcgt tccgcctggg ataccagtac
     2101 aactatgccg attacatcgg cggcttgcgc gcggggcggc ggctggacct gaacctctac
     2161 agcgggttca atttcaaggg ctggtacctg cgcaacagct cgacgctggg atggggccag
     2221 ggccgcttca cgcgccgcag ccagcgcacc agcctgcaga cggatatccc gtcctggcgg
     2281 gcgcgcctgg tgttcggcga cgtgttctcc agcggcgagt acttcgcgcc gtactcgatg
     2341 cgcggcatgc tggtcggcag cgataccgcc atgctgccgt actcggagcg cctgtaccgg
     2401 ccgaccatac gcggcgttgc gcgcactcgg gccaacgtca aggtgtatca ggccggcgtg
     2461 ctggttttcc aggacgccgt gcctcccggg ccgttcgcga tcgacgatta cagtccggcc
     2521 tcgtatggcg gcgacctgcg ggtggtggtg accgaggcga atggcgcggt ccagacgttc
     2581 accgtgccgt acgccagcgc ggtgcgcctg atcctgccgg gccagacgca gtggtcgttc
     2641 agcgccgggc gctatcgcaa ctatcgcaac gatgggcagg accgtccctg ggtgacccag
     2701 ctgacgggcc gccatggcgt ggccgacggc gtcaacctgt acggcggcct gctgatcgcc
     2761 caggcgtacc aggccggcct ggccggcctg agctggaaca cgccctgggg ggcaatggcg
     2821 gcggacgcca cgctgtcgcg cagccagctg tccaccaccg gcaatgccaa cgggtcgagc
     2881 ctgcggttct cctacagcaa gaccttgtcc ggcaccaaca cggcgatccg gctggctacg
     2941 ctgcgctact cgtcgagcgg gttctggaat ttcgccgatg cggtcaatgc cggcccggtc
     3001 gagacgaacg ggcgcaacgg gcggttcgga ctctattcgc tgctgggccg cgagcggccg
     3061 cgcggcgatt tcagcgtcac gctgagccaa ccgctgggtg gatacggcag cctgtacgtg
     3121 tcggcgctgc ggcggaccta ctggggttcg tcgcgggtcg accagcagac ccagctgggc
     3181 tattcgaccc aggtcggccg cgtaggcgtg aacctggatg tctcgcgtac ggagaatcgt
     3241 cgcagcaccg agcatcaggt catgctgaat ctgtccattc cgctttatgg cgcgacctcc
     3301 agcggcgtgg tgacgggatc gctggcgcgt accggctcgg cgcccgtaca gcaaagcgtc
     3361 aactacagcg gcatgtcggg cgagcgcgat cagtacacct atggcctggg cgtgcagcgc
     3421 gccggcacga gcgcgcagta cgcgttgaac ggctcctggt caggcacgta cggggaggta
     3481 agcggacagc tcacccatgg gcgcagctac agccagtacc agatcaacgg cagcggcggc
     3541 ttggtggcgc acgcgggcgg cgtgaccttc ggccagtacc aggcgggcac catcggcctg
     3601 atccaggccg aggcggcggc aggcgcaaag gtcgtcaata cgcgcaacgc cgccgtggac
     3661 cgcagcggct atgggctggt gtcgctgacg ccgtattccc tcaacgaggt cgaactgtct
     3721 ccgcaggacc tgcccctaga cgttcagctg gagtccacgg tggagcaagt catcccgcgg
     3781 gcggccgccg tcgtggcgct gcgctttccg acgcgccatg acgtcgccgc catgctggtt
     3841 gccgaacccg gcagcgaagg cgcgctggta ttcggcaccg aagtgcgcga cggcgccggc
     3901 aaggtggtgg gcgtggccgg ccagggcgca agcgcgctgg tcagaggcgt gtcggcatcg
     3961 ggcacgctgg aggtgacgcg cgcagacggt tcgatatgcc gcgccacgta cgacttgaaa
     4021 tcggccgggc aagccgtgca tggcctgccg cgcattgcgc tggcgtgcgc gccgcaaggc
     4081 ggcggcgaac gtggtgcgcg ggcggcgggc caggccgtgg cgcagccatc agctatctcc
     4141 atttcgggta aagatcatga gccagatatt cgctgaccgc cgggccgccg tgcccgcgcg
     4201 cgtaatttcc ttctgcgggg ccgcgcttgc cgtctgggca ggcctggccg tgcagcccgc
     4261 catggccgtc gatccgccgg tggactgcgg ccgggcgcta ggcttgcatt tctggtcgag
     4321 cgcctcgctc atctccgacc agacacccga tgggacgctg atcggcaagc ccgtggtcgg
     4381 gcggtccctg ctgtccaaga gctgcaaggt gccggacgac atcaaggaag acctcagcga
     4441 caaccatgac ggcgaaccgg tcgacatcgt gctggaactg ggcagtaact acaagatccg
     4501 gccgcagtcc tatggccatc cgggcatcgt ggtcgacttg ccgttcggct ccacggagga
     4561 gaccggcatc gccatctata tcgatttcgg cagttcgccg atgcagaagg tcggcgaacg
     4621 gcagtggctg tatccccaga aaggcgaagt gcttttcgac gtgctcacca tcaacggcga
     4681 caacgcggag gttcgctatc aggcgatcaa ggtcgggcca ctcaagcggc cgcgcaagct
     4741 ggtgctgtcg cagtttccga acctgttcac ctacaagtgg gttttcatgc gcgggaccag
     4801 ccaggagcgc gtgctggcgc aggggaccat cgacaccgac gtcgccacca gcaccatcga
     4861 cctgaaaacc tgccgctata cctcgcagac ggtcagcctg cccatcatcc agcgttccgc
     4921 gttgaccggc gtcggtacga ccctggggat gaccgatttc cagatgccgt tctggtgcta
     4981 tggctggcca aaggtatcgg tgtacatgag cgcgacgaag acgcagaccg gcgtagacgg
     5041 cgtggcgttg ccggcgaccg gccaggcggc cggcatggcc agcggcgtag gcgtccagtt
     5101 gatcaacggc aagacgcagc agccggtcaa gctgggcctg cagggcaaga tcgccttgcc
     5161 cgaggcgcag cagactgagt cggcgacgtt ctcgctgccc atgaaggcgc agtactacca
     5221 gacctccact tcaacctcgg cgggcaagct gtccgtcacc tacgccgtga ccttgaacta
     5281 tgactgacgc aacgaaccgt ttccggccgg gcctggttgg tcgggcgctg gtccgggcag
     5341 gcctgctgtt cgccgtggcc gcctgtgcgc aggcgcagct gctgccgggc gcgcgcgacc
     5401 tcaaccgtat cgacgatcgc cagcgcaagg agcagctgca g
//