From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Caenorhabditis elegans repeat units and transposon insertion site
Date: 28 Aug 92 10:00:29 GMT
Distribution: bionet
Checksum: 26459     4

LOCUS       CELREPS03     422 bp ds-DNA             INV       28-AUG-1992
DEFINITION  Caenorhabditis elegans repeat units and transposon insertion site
            DNA sequence.
ACCESSION   L00590
KEYWORDS    insertion site; repeat units; transposon Tc2.
SOURCE      Caenorhabditis elegans (strain Bergerac BO) DNA.
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
            Rhabditina; Rhabditoidea; Rhabditidae.
REFERENCE   1  (bases 1 to 422)
  AUTHORS   Ruvolo,V.R., La Volpe,A., Naclerio,G., Coulson,A. and Levitt,A.M.
  TITLE     Tandem repeats and SINE-like elements associated with insertion
            sites of the Tc2 transposon of C. elegans
  JOURNAL   Unpublished (1992)
  STANDARD  full staff_review
REFERENCE   2  (bases 1 to 422)
  AUTHORS   Naclerio,G., Cangiano,G., Coulson,A., Levitt,A.M., Ruvolo,V.R. and
            LaVolpe,A.
  TITLE     Molecular evolution of clusters of satellite-like DNA sequences in
            Caenorhabditis elegans
  JOURNAL   J. Mol. Biol. (1992) In press
  STANDARD  full automatic
FEATURES             Location/Qualifiers
     misc_feature    1..2
                     /note="transposon Tc2 insertion site; believed to be
                     duplicated during transposition"
                     /note="putative"
                     /citation=[1]
     repeat_region   56..131
                     /rpt_family="Rc123"
                     /rpt_type=dispersed
                     /note="portion of re-arranged Rc123 sequence (other
                     portion at bp 390-422)"
                     /note="putative"
                     /citation=[1]
                     /citation=[2]
                     /partial
     repeat_region   297..367
                     /rpt_family="RcA1"
                     /rpt_type=dispersed
                     /note="portions of re-arranged RcD1 (usually 83 bp) at bp
                     297-396 and bp 341-367"
                     /note="putative"
                     /citation=[1]
                     /citation=[2]
                     /partial
     repeat_region   390..422
                     /rpt_family="Rc123"
                     /rpt_type=dispersed
                     /note="portion of a re-arranged Rc123 sequence (other
                     portion at bp 56-131)"
                     /note="putative"
                     /citation=[1]
                     /citation=[2]
                     /partial
BASE COUNT      136 a     47 c     77 g    162 t
ORIGIN
        1 tattaacaat aaattattgt ttttcattag aaaatataga caattttttt gacggggtag
       61 gattactgta gttttcgaaa aattgaattt tttcccaaaa gtaagccggg gtactgtagt
      121 agtactgtag gattcttttt aatctttttt tggcatttaa aaacttggaa aaaatattta
      181 aatttctaaa gaaaattgcc tttttttcaa tttttcgata tcttaaaaac taaaatcgaa
      241 aaacttcggt ttttcgaaaa atatcccaaa tttttggtca tttttctaga aaatgtaaaa
      301 tcattactta tatataaaaa aatacatgtg ggatcttaca attgtagttt gtagtctgtg
      361 acgtcacact tgcaaggtgt ttccggctgt tgaagggatt gtgggttggg gttagtaggg
      421 gg
//