From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: flaA=flagellin [Helicobacter pylori, NCTC11637, Genomic, 1800 nt]
Date: 27 Jan 93 05:55:24 GMT
Distribution: bionet
Checksum: 54124 5

LOCUS       S117723      1800 bp    DNA             BCT       12-JAN-1993
DEFINITION  flaA=flagellin [Helicobacter pylori, NCTC11637, Genomic, 1800 nt]
ACCESSION   S48355 X60746
KEYWORDS    .
SOURCE      Helicobacter pylori NCTC11637
  ORGANISM  Helicobacter pylori
            Unclassified.
REFERENCE   1  (bases 1 to 1800)
  AUTHORS   Leying,H., Suerbaum,S., Geis,G. and Haas,R.
  TITLE     Cloning and genetic characterization of a Helicobacter pylori
            flagellin gene.
  JOURNAL   Mol. Microbiol. 6, 2863-2874 (1992)
  STANDARD  full automatic
COMMENT     This entry [NCBI gibbsq 117723] was created by the journal scanning
            component of NCBI/GenBank at the National Library of Medicine.
            This sequence comes from Fig. 3.
FEATURES             Location/Qualifiers
     CDS             139..1671
                     /note="mismatch(19[A->E]).  For the protein sequence (NCBI
                     gibbsq 117725):  Method: conceptual translation with
                     partial peptide sequencing.  This sequence comes from Fig.
                     3.
                     Author-given protein sequence is in conflict with the
                     conceptual translation"
                     /gene="flaA"
                     /product="flagellin"
                     /codon_start=1
                     /translation="MAFQVNTNINAMNAHVQSALTQNALKTSLERLSSGLRINKAADD
                     ASGMTVADSLRSQASSLGQAIANTNDGMGIIQVADKAMDEQLKILDTVKVKATQAAQD
                     GQTTESRKAIQSDIVRLIQGLDNIGNTTTYNGQALLSGQFTNKEFQVGAYSNQSIKAS
                     IGSTTSDKIGQVRIATGALITASGDISLTFKQVDGVNDVTLESVKVSSSAGTGIGVLA
                     EVINKNSNRTGVKAYASVITTSDVAVQSGSLSNLTLNGIHLGNIADIKKNDSDGRLVA
                     AINAVTSETGVEAYTDQKGRLNLRSIDGRGIEIKTDSVSNGPSALTMVNGGQDLTKGS
                     TNYGRLSLTRLDAKSINVVSASDSQHLGFTAIGFGESQVAETTVNLRDVTGNFNANVK
                     SASGANYNAVIASGNQSLGSGVTTLRGAMVVIDIAESAMKMLDKVRSDLGSVQNQMIS
                     TVNNISITQVNVKAAESQIRDVDFAEESANFNKNNILAQSGSYAMSQANTVQQNILRL
                     LT"
BASE COUNT      533 a    328 c    428 g    511 t
ORIGIN      
        1 tttattatag cccattttca tgctctttta aattttgctt ttaaagtaaa gccctttaaa
       61 atttcaaact ttaaccgata atagttccaa ccaaaagcaa ggatgccttt gggtttttta
      121 taacaaggag ttacaacaat ggcttttcag gtcaatacaa atatcaatgc gatgaatgcg
      181 catgtgcaat ccgaactcac tcaaaatgcg cttaaaactt cattggagag attgagttca
      241 ggtttaagga ttaataaagc ggctgatgac gcatcaggca tgacggtggc ggattctttg
      301 cgttcacaag cgagcagttt gggtcaagcg attgccaaca cgaatgacgg catggggatt
      361 atccaggttg cggataaggc tatggatgag cagttaaaaa tcttagacac cgttaaggtt
      421 aaagcgactc aagcggctca agatgggcaa actacggaat ctcgtaaagc gattcaatct
      481 gacatcgttc gtttgattca aggtttagac aatatcggta atacgactac ttataacggg
      541 caagcgttat tgtctggtca attcactaac aaagaattcc aagtaggggc ttattctaac
      601 caaagtatta aggcttctat cggctctacc acttccgata aaatcggtca ggttcgtatc
      661 gctacaggcg cgttaatcac ggcttctggg gatattagct tgacttttaa acaagtggat
      721 ggtgtgaatg atgtaacttt agagagcgta aaagtctcta gttcagcagg cacagggatt
      781 ggcgtgttag cagaagtgat caacaaaaat tctaaccgaa caggggttaa agcttatgcg
      841 agcgttatca ccacgagcga tgtggcggtc cagtcaggaa gtttgagtaa tttaacctta
      901 aatgggatcc atttgggcaa tatcgcagat attaagaaaa atgactcaga cggaaggtta
      961 gtcgcagcga tcaatgcggt tacttcagaa accggtgtgg aagcttatac ggatcaaaaa
     1021 gggcgcttga atttgcgcag tatagatggt cgtgggattg aaatcaaaac cgacagcgtc
     1081 agtaatgggc ctagtgcttt aacgatggtc aatggcggtc aggatttaac aaaaggctct
     1141 actaactacg gaaggctttc tctcacacga ttagacgcta agagcatcaa tgtagtttca
     1201 gcttctgact cacagcattt aggtttcaca gcgattggtt ttggggaatc tcaagtggca
     1261 gaaaccacgg tgaatttgcg cgatgttacc gggaatttta acgctaatgt caaatcagcc
     1321 agtggcgcga actataacgc cgtcatcgct agtggcaatc aaagcttggg atctggggtt
     1381 acaaccttaa gaggcgcgat ggtggtgatt gatattgccg agtctgcgat gaaaatgttg
     1441 gataaagtcc gctctgattt aggttctgtg caaaatcaaa tgattagcac cgtgaataac
     1501 atcagcatca ctcaagtgaa tgttaaagcg gctgaatctc aaatcaggga tgtggatttt
     1561 gctgaagaga gcgcgaattt caataaaaac aacattttgg cgcaatcagg cagctatgcg
     1621 atgagtcaag ccaacaccgt tcaacaaaat atcttaaggc ttttaactta gttttgagaa
     1681 aggtgtttgt atggggctaa cgctttaagc gttggctttt cgctttaatt tttacttctt
     1741 ttttaataaa atactctttt tgattccttt ttatcatagg cggttattgt gttgggtagt
//