From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: R.capsulatus petP, petR, and fbcF genes
Date: 24 Jul 92 10:09:47 GMT
Distribution: bionet
Checksum: 24962     5

LOCUS       RCAPETPR     1672 bp ds-DNA             BCT       24-JUL-1992
DEFINITION  R.capsulatus petP, petR, and fbcF genes
ACCESSION   Z12113
KEYWORDS    Rieske FeS subunit of bc1 complex; fbcF gene; petP gene; petR gene.
SOURCE      Rhodobacter capsulatus DNA.
  ORGANISM  Rhodobacter capsulatus
            Prokaryotae; Gracilicutes; Anoxyphotobacteria;
            Purple nonsulfur bacteria.
REFERENCE   1  (bases 1 to 1672)
  AUTHORS   Daldal,F.
  JOURNAL   Unpublished (1992)
  STANDARD  full automatic
REFERENCE   2  (bases 1 to 1656)
  AUTHORS   Tokito,M.K. and Daldal,F.
  TITLE     petR, located upstream of the fbcFBC operon encoding the cytochrome
            bc1 complex, is homologous to bacterial response regulators and
            necessary for photosynthetic and respiratory growth of Rhodobacter
            capsulatus
  JOURNAL   Mol. Microbiol. (1992) In press
  STANDARD  full automatic
COMMENT     *source: strain=MT1131; *source: is_macronuclear=N; *source:
            is_proviral=N; *source: is_germline=N;
            From EMBL    entry RCPETPR;  dated 18-MAY-1992.
FEATURES             Location/Qualifiers
     RBS             189..193
     CDS             199..699
                     /standard_name="petP"
                     /note="part ofthe petPR operon in front of fbc operon"
                     /product="protein of unknown function"
                     /gene="petP"
                     /codon_start=1
                     /translation="MADTGAPGGETLLFLTDEQLRKGIEAMFFAYRGFTADPDRILDQ
                     HDYGRAHHRAIHFINREPGLTVTTLISVLGVTKQSLNRVLRTLIDDGLVESRVGRRDK
                     RERHLHLTEKGAVLERELSEAQRVRMPAAYRAAGPQAVAGFRQVLEAMMDPAMRRHYQ
                     MLKDAE"
     RBS             676..680
     CDS             (696.699)..1409
                     /standard_name="petR"
                     /product="protein of unknownfunction"
                     /gene="petR"
                     /codon_start=1
                     /translation="MSASPPHLLIVDDDERIRGLLQKFLIRNGFLVTAGRDAAHARRL
                     LSGLEFNLIVLDVMMPGEDGLSLTRDLRTKMATPILLLTARGETRERIEGLEAGADDY
                     LPKPFEPKELLLRINAILRRVPEAVTAGPKYLSLGPLRYDLDRGELSQGDQPVRLTAT
                     EAALMRIFAAHAGEVIGRTELIEELGRDRSASAEEAAGDRAVDVQITRLRRKIEPDPR
                     EPRYLQTVRGLGYMLAPD"
     stem_loop       1457..1466
     protein_bind    1569..1583
                     /bound_moiety="a possible regulator"
     CDS             1604..>1672
                     /product="Rieske FeS subunit of bc1 complex"
                     /gene="fbcF"
                     /codon_start=1
                     /translation="MSHAEDNAGTRRDFLYHATAATG"
BASE COUNT      305 a    531 c    546 g    290 t
ORIGIN
        1 ttcccgtcca tccagatctt gccgtcacga tcgtcgtaag ccccggccat cacgccctcc
       61 ttggctgctt cgttttcaca agttgcgcca tctaggtccg tctcggacat aatattgcgc
      121 aaaatctgcg cttcggtaac aattgattct tggaaagtca acaaggctga cataaagtcg
      181 cgcaaaagcg aggatcacat ggccgatacc ggagcccccg ggggcgaaac gctcctgttt
      241 ctgaccgacg aacagctgcg caagggcatc gaggcgatgt tctttgccta tcgcggcttc
      301 accgccgatc cggaccggat cctggatcag cacgattatg gccgggcgca tcaccgcgcc
      361 atccacttca tcaaccgcga gccggggctg acggtgacga cgctgatctc ggtgctgggg
      421 gtgacgaagc aaagcctgaa ccgggtcctg cgcacgctca ttgacgatgg tctggtcgaa
      481 agccgcgtcg ggcggcgcga caagcgcgag cggcatctgc acctgaccga aaagggcgcg
      541 gtgctggaac gcgaattgtc cgaggcgcaa cgggtgcgga tgcccgccgc ctatcgcgcg
      601 gcggggccgc aggcggtggc gggcttccgg caggtgctgg aggcgatgat ggatccggcg
      661 atgcggcgcc attaccagat gctgaaggat gccgaatgat gtcggcctcg cccccgcatc
      721 ttctgatcgt cgatgacgac gaacggattc gtggtcttct gcagaagttc ctgatccgca
      781 acggctttct ggtcacggcc gggcgggatg cggcgcatgc ccgccgcctg ctctcggggc
      841 tcgaattcaa cctgatcgtg cttgacgtga tgatgccggg cgaggacggg ctgtcgctca
      901 cccgcgatct gcgcacgaag atggcgacgc cgatcctgct tctgaccgcg cgcggcgaaa
      961 cccgcgagcg gatcgagggg ctcgaggccg gggccgatga ctacctgccc aaaccgttcg
     1021 agccgaagga acttctgctg cgcatcaacg cgatcttgcg gcgcgtgccc gaggcggtga
     1081 cggcggggcc gaaatatctg tcgcttggtc cgctgcgcta tgatctcgac cgcggcgagc
     1141 tgagccaggg cgatcagccg gtgcgactca ccgcgaccga ggccgcgctg atgcgaatct
     1201 tcgccgccca tgcgggcgag gtgatcgggc gcaccgagct gatcgaggag ctgggccggg
     1261 accgttccgc cagcgccgag gaggccgcgg gcgaccgcgc cgtcgatgtg cagatcaccc
     1321 gtctgcgccg caagatcgag cccgacccgc gcgaaccgcg ctacctgcag acggtgcgcg
     1381 gacttggcta catgcttgca cccgattgag gcctgcaagc gcctgcccca gcgacaaaaa
     1441 agcgcgaatc gggccgagcc gcggcttttc gcctcaccct cttgtgaatg tatgctggac
     1501 tgcgggtttc ccggacgcta aacgggcact gtccggccgc attctgtgtg gcccgcaaag
     1561 gcgcatcgac ttgaatttca agttcgggga agggagaaga cacgtgtccc acgcagaaga
     1621 caacgcaggc actcggaggg atttcctcta tcatgccacc gccgccaccg gg
//