From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Felis catus endogenous FeLV proviral polyprotein {protease (PRO),
Date: 28 Jan 93 05:46:11 GMT
Distribution: bionet
Checksum: 00924 7

LOCUS       CATFLVPOL    3639 bp ds-DNA             MAM       27-JAN-1993
DEFINITION  Felis catus endogenous FeLV proviral polyprotein {protease (PRO),
            reverse transcriptase (RT), integrase/endonuclease (INT)} (pol)
            pseudogene, 3' end.
ACCESSION   L06140
KEYWORDS    integrase/endonuclease; protease; pseudogene;
            reverse transcriptase.
SOURCE      Felis catus (library: lambda) placenta DNA.
  ORGANISM  Felis catus
            Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
            Eutheria; Carnivora; Feliforma; Felidae.
REFERENCE   1  (bases 1 to 3639)
  AUTHORS   Pandey,R., Ghosh,A.K., Kumar,D.V., Bachman,B.A., Shibata,D. and
            Roy-Burman,P.
  TITLE     Recombination between Feline Leukemia Virus subgroup B or C and
            endogenous env elements alters the in vitro biological activities
            of the viruses
  JOURNAL   J. Virol. 65, 6495-6508 (1991)
  STANDARD  full automatic
COMMENT     *clone = CFE-6.
FEATURES             Location/Qualifiers
     misc_feature    4..3639
                     /note="This feature applies to a gene which lacks a coding
                     region feature. "
                     /gene="pol"
     CDS             <4..3639
                     /pseudo
                     /product="polyprotein"
                     /gene="pol"
                     /codon_start=1
                     /note="putative"
     mat_peptide     4..381
                     /function="cleaves the GAG-POL polyprotein"
                     /product="protease"
                     /codon_start=1
                     /citation=[1]
                     /note="the endogenous sequence for the protease contains
                     four internal stop codons (pos. 16, 58, 64, 85) which make
                     it non-functional; putative"
     mat_peptide     382..2388
                     /function="viral replicase"
                     /product="reverse transcriptase"
                     /codon_start=1
                     /citation=[1]
                     /note="putative"
     mat_peptide     2389..3636
                     /function="integration of proviral DNA into the host
                     genome"
                     /product="integrase/endonuclease"
                     /codon_start=1
                     /citation=[1]
                     /note="putative"
BASE COUNT     1040 a   1007 c    833 g    759 t
ORIGIN      
        1 ctcaacctag aagattagga aggtcagggc caggaccccc cccccccgag cccaggataa
       61 ccctaaaagt gggggggcaa ccagtgaacc tttctggtgg atacgggagc ccagcactcg
      121 gtactgactc gaccagacgg acctctcagt gaccgctcag ccctggtgca aggagccaca
      181 ggaagcaaaa actaccgatg gaccaccgac aggagggtgc aactggcaac ccgtaaggtg
      241 actcattctt ttttatatgt acctgaatgt ccctacccgt tattagggag agacctatta
      301 accaaactca aggctcagat ccatttcacc ggggaaggag ctaatgttgt tggacccatg
      361 ggctcacccc tacaagtcct caccttgcaa ctagaagaag agtatcggct atttgagccg
      421 aaaagtgaac tgaaacaagg tatggacagt tggcttaaaa actttccccg ggcatgggca
      481 gaaacaggag gtatgggaat ggctcattgc caagccccca tcctcattca acttaaagct
      541 actgccaccc caatctccat tcggcagtac cccatgcccc atgaagctta ccaaggaatt
      601 aaaccccata taaggagaat gctggaccaa ggcatcctca agccctgccg gtccccatgg
      661 aatacacccc tattacctgt caaaaagcca ggaaccgggg attaccgacc agtgcaggac
      721 ttaagagaag taaataaaag ggtagaggac atccatccca ctgtgccaaa cccatacaac
      781 ctccttagca ccctcccacc ttctcaccct tggtacaccg tcctagatct aaaagatgct
      841 tttttctgct tgcgactaca ccctgagagc caattactct ttgcatttga atggaaagat
      901 ccagagatag ggctgtcagg gcaactgacc tggactcgcc ttccacaagg gttcaagaac
      961 agccccaccc tatttgacga ggccctacac tcagacctgg cagatttcag ggtgaggtat
     1021 ccagctttag tcctcctaca atatgtagat gacctcttgc tggctgcggc aaccaagacc
     1081 gaaagcctag aagggactaa ggcactcctt gagactttgg gcaataaggg ttaccgagcc
     1141 tctgcaaaga aggcccagat ttgcctgcag aaagtcacat acctagggta ctctttagag
     1201 gatggtcaaa gatggcttac caaagctcgg aaagaagcca ttctctccat ccctgtgcct
     1261 aaaaacccac ggcaagtgag agagttcctt ggacctgcag gctactgccg gctgtggatt
     1321 cccggttttg ccgagctcgc tgccccgcta tatcctctca ctcgaccagg aactctgttt
     1381 cagtggggag cagaacaaca attggccttc gaaaacatta aaaaagccct cttgagctcc
     1441 cctgccctgg ggttgccaga tatcaccaag ccctttaaat tatttattga tgagagctca
     1501 gggtttgcga agggggtgtt ggtccaaaaa ctgggaccct ggaaaagacc agttgcctac
     1561 ctatcaaaaa aactggatac agtggcatct ggatggcccc cttgtttacg catggttgca
     1621 gccatcgcca tcctagtcaa ggatgcaggg aagctaactc taggacagcc gctaactgtc
     1681 ctgacctccc acccagttga ggcacttgtc cgacagcctc caaataaatg gctctctaat
     1741 gctagaatga ctcattacca agctatgctc ctcgatgcag agcgagtcca tttcgggcca
     1801 acggtctccc ttaaccctgc caccttgctt cccctcccca acgagagaag ccaccacgac
     1861 tgcctccaga ttttagccga gacccatggc accagacccg acttaactga ccagccgtta
     1921 ccggatgcag acctgacctg gtacacggat ggtagcagct tcatccgtaa cggagagaga
     1981 aaagccggag ccgcggtaac aaccgaatct gaggtaatct gggctgcttc cctcccaccc
     2041 ggaacatcag cccagcgagc cgaactgatt gccctgaccc aggcactaaa gatggcaaaa
     2101 ggtaagaagc taactgtcta tacggacagc cgatacgcct ttgctacagc tcatgtacat
     2161 ggggaaatct acaggcggcg gggcctgcta acttcagaag gaaaagaaat taaaaataaa
     2221 aatgaaatcc tcgccctatt agaggcgtta ttcttaccca aaagactgag tatcatccat
     2281 tgcccgggac accaaaaagg tgatagtccc caggcgaaag gaaacagatt agccgatgat
     2341 acagcaaaga aagccgccac agagactcaa tcatcactaa ccatcttacc cacagaactt
     2401 atagagggtc ccaaaaggcc tccatgggaa tatgatgaca gtgatttaga ccttgtgcag
     2461 aaactcgaag ctcattatga gccgaaaaga ggtacctggg agtaccaagg aaaaactata
     2521 atgcctgaaa aatacgcaaa agagttgatt agccatctgc ataagttaac acacctcagt
     2581 gctagaaaaa tgaaaacttt actagaaagg gaagaaactg ggttttacct ccctaacaga
     2641 gacttacacc tccggcaagt aacagagagc tgccgggcat gtgctcaaat aaacgcaggg
     2701 aaaataaagt ttggacctga tgtgagagcc cgaggccacc ggcccggaat acattgggaa
     2761 gtagacttca ctgaaatcaa gccaggaatg tatggatata aatacctctt ggtgttcata
     2821 gacaccttct ctggctgggc cgaagcttac cccgccaaac atgaaacagc aaaagttgtt
     2881 gccaagaaac tcttagaaga gatttttcct cgttacggga tccctcaggt attgggttca
     2941 gataatggac ccgccttcat ctcccaggta agtcagtctg tggccaccct actggggatt
     3001 aattggaaat tacattgtgc ataccgaccc caaagttcag gtcaggtaga aagaatgaat
     3061 agatcaatta aggagacttt aactaaatta acgctagaaa ctggctctaa ggattgggtg
     3121 ctcctcctgc ccctggtttt ataccgggta cgtaacacgc caggtcccca cgggttaact
     3181 ccttttgaaa ttctgtacgg ggcacctcca cctatggctc acttctttga ttctgacatc
     3241 tctggtttcg ctacatcccc caccatgcag gcacatttac gcgccctgca gctggtccaa
     3301 gaagaaatcc agagacctct agcggcagcc taccgagaaa agctcgaaac cccggttgtg
     3361 cctcacccct tcaaaccagg agactccgtc tgggttcgga gacatcaaac caagaacctc
     3421 gagccacggt ggaagggacc acatatcgtc ctcctgacca cccccacggc cttaaaagta
     3481 gacggagttg ctgcttggat ccacgcctct catgtaaagg ctgcagggcc aaccaccgat
     3541 caggacccct cagacgaccc cagctcagac gatctatcaa gatggaaggt ccaacgcacc
     3601 caaaaccctc taaagataag actttctcgt gggacctaa
//