From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Paracoccus denitrificans DNA repair protein (uvrA) gene, 3' end,
Date: 1 Sep 92 10:03:15 GMT
Distribution: bionet
Checksum: 33175     9

LOCUS       PDENQOUVR    3738 bp ds-DNA             BCT       01-SEP-1992
DEFINITION  Paracoccus denitrificans DNA repair protein (uvrA) gene, 3' end,
            and NADH dehydrogenase (NQO4, NQO5, NQO6, NQO7) genes, complete
            cds.
ACCESSION   M93015
KEYWORDS    DNA repair protein; NADH dehydrogenase; NQO4 gene; NQO5 gene;
            NQO6 gene; NQO7 gene; excision nuclease; ndhK gene; uvrA gene.
SOURCE      Paracoccus denitrificans DNA.
  ORGANISM  Paracoccus denitrificans
            Prokaryotae; Gracilicutes; Scotobacteria; Neisseriaceae.
REFERENCE   1  (bases 1 to 3738)
  AUTHORS   Xu,X., Matsuno-Yagi,A. and Yagi,T.
  TITLE     Gene cluster of the energy-transducing NADH-quinone oxidoreductas
            of Paracoccus denitrificans: Characterization of four structural
            gene products
  JOURNAL   Biochemistry 31, 6925-6932 (1992)
  STANDARD  full staff_review
FEATURES             Location/Qualifiers
     CDS             1..333
                     /function="ATPase and DNA binding protein"
                     /product="DNA repair protein"
                     /gene="uvrA"
                     /note="putative"
                     /codon_start=1
                     /translation="KLSKELSRRATGKTLYILDEPTTGLHFEDVRKLLEVLHSLVDQG
                     NTVVVIEHNLDVIKTADWIIDIGPEGGDGGGAIVATGTPEQVAEVPESHTGRYLAPML
                     DAARSAAE"
                     /citation=[1]
                     /partial
     CDS             880..1245
                     /EC_number="1.6.5.3"
                     /standard_name="nd3 subunit of Paracoccus NDH-1"
                     /product="NADH dehydrogenase"
                     /gene="NQO7"
                     /note="putative"
                     /codon_start=1
                     /translation="MEYLLQEYLPILVFLGMASALAIVLILAAAVIAVRNPDPEKVSA
                     YECGFNAFDDARMKFDVRFYLVSILFIIFDLEVAFLFPWAVSFASLSDVAFWGLMVFL
                     AVLTVGFAYEWKKGALEWA"
                     /citation=[1]
     CDS             1245..1766
                     /EC_number="1.6.5.3"
                     /standard_name="ndhK subunit of Paracoccus NDH-1"
                     /product="NADH dehydrogenase"
                     /gene="NQO6"
                     /note="putative"
                     /codon_start=1
                     /translation="MTGLNTAGADRDLATAELNRELQDKGFLLTTTEDIINWARNGSL
                     HWMTFGLACCAVEMMQTSMPRYDLERFGTAPRASPRQSDLMIVAGTLTNKMAPALRKV
                     YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIL
                     QLQRRASGAPARW"
                     /citation=[1]
     CDS             1775..2398
                     /EC_number="1.6.5.3"
                     /standard_name="25k subunit of Paracoccus NDH-1"
                     /product="NADH dehydrogenase"
                     /gene="NQO5"
                     /evidence=EXPERIMENTAL
                     /codon_start=1
                     /translation="MSEALSDEALLELAEHIAVRRENDVISTQAVGELTVNATLSGVI
                     GLIEFLRNDPNCRFSTLIDITAVDNPARPARFDVVYHLLSMYQNQRIRVKVQVREDEL
                     VPSLIGVFPGANWYEREVFDLFGILFSGHSDLRRILTDYGFRGHPLRKDFPTTGYVEV
                     RWSDIEKRVVYEPVNLVQEYRQFDFLSPWEGAKYVLPGDEKAPEAKK"
                     /citation=[1]
     CDS             2452..3690
                     /EC_number="1.6.5.3"
                     /standard_name="48k subunit of Paracoccus NDH-1"
                     /product="NADH dehydrogenase"
                     /gene="NQO4"
                     /evidence=EXPERIMENTAL
                     /codon_start=1
                     /translation="MDGDIRKNSLDDGSMDALTGEQSIRNFNINFGPQHPAAHGLLRM
                     VLELDGEIVERADPHIGLLHRGTEKLMESRTYLQNLPYLDRLDYVAPMNQEHAWCLAI
                     ERLTGTVIPRRASLIRVLYSEIGRILNHLMGVTTGAMDVGALTPPLWGFEAREELMIF
                     YERACGARLHAAYFRPGGVHQDLPPDLLDDIEEWCERFPKLVDDLDTLLTENRIFKQR
                     LVDIGIVTEADALDWGYTGVMVRGSGLAWDLRRSQPYECYDEFDFQIPVGRNGDCYDR
                     YLCRMAEMRESCKIMQQAVQKLRAEPAGDVLARGKLTPPRRAEMKRDMESLIHHFKLY
                     TEGFKVPAGEVYAAVEGPKGEFGVYLVADGTNKPWRAKLRAPGFAHLQSIDWMSRGHM
                     LADVPAIIATLDIVFGEVDR"
                     /citation=[1]
BASE COUNT      635 a   1209 c   1220 g    674 t
ORIGIN
        1 aagctttcca aggaactgtc gcgccgcgcc accggcaaga cgctgtatat cctggacgaa
       61 ccgacgaccg ggctgcattt cgaggatgtg cgcaagctgt tggaagtgct gcattccctg
      121 gtcgaccagg gcaacacggt cgtggtgatc gaacataacc tggacgtcat caagaccgcc
      181 gactggatca tcgacatcgg ccccgagggg ggcgacggcg gcggcgccat cgtcgccacc
      241 ggcacgcccg aacaggtggc cgaggtgccg gaaagccata ccggccgcta tctggcgccc
      301 atgctcgacg cggcgcgcag cgctgcggaa tgagcacgat cgcctggcag cgggtcgagg
      361 gcgccgggct ggcgcttggc gggcttgccg tggccgctct ggcggcgccg ggctggggcg
      421 ctgcgatctg gctggcgatc ctgcttgcgc ccgacctgac gatggctggc tatctggccg
      481 gcccgcgcat cggtgcggca ttttacaacc tgggccatct ctatgcgccg gctttcctgc
      541 tgacggtgct gggcgtggcg ctgggatcga ccgcgctgat gcccccccgc gggctttggc
      601 tggcgcatgt cggctttgac cggatgctgg gttacgggct gaaatcgccc tcgggctttc
      661 gcgacacgca tctgggtcga atcggccggg aagccgagta aaataccttg agaatcccgt
      721 gccgtgacct gcggttttct cgtgtcgcag cggctgcaaa gccggtctga cgcggggtgg
      781 caccgttgac catatccgcg accggggata aacggacctt agccaaaccc atcgcggggc
      841 gccagtcggg ttcctgcgag cgaaagggag cccaacccag tggaatacct gctgcaagaa
      901 tacctgccga tcctggtttt tctgggaatg gcctcggcgc ttgccatcgt gctgattctg
      961 gccgccgcgg tcatcgccgt acgcaacccg gacccggaaa aggtcagcgc ctatgaatgc
     1021 ggcttcaacg ccttcgacga cgcgcggatg aagttcgacg tgcgcttcta tctggtgtcg
     1081 atcctgttca tcatcttcga cctcgaagtc gctttcctgt tcccctgggc ggtcagcttt
     1141 gccagcctgt cggacgtggc cttctgggga ctgatggtgt tcctggccgt tctgaccgtg
     1201 ggctttgcct atgaatggaa gaagggggcg ctggaatggg cgtgatgacc ggcctgaaca
     1261 ccgcaggcgc cgaccgtgac ctcgccacgg ccgagctgaa ccgagagttg caggacaagg
     1321 gcttcctgct gaccacgacc gaggacatca tcaactgggc gcgcaacggt tcgctgcact
     1381 ggatgacctt cggcctggcc tgctgcgcgg tcgagatgat gcagacctcg atgccgcgct
     1441 atgacctgga acgcttcggg accgcgccgc gcgcctcgcc gcggcagtcg gacctgatga
     1501 tcgtcgcggg cacgctgacc aacaagatgg ccccggcgct gcgcaaggtc tatgaccaga
     1561 tgcccgagcc gcgctatgtc atctcgatgg gcagctgcgc caatggcggc ggctactatc
     1621 attattccta ttcggtggtg cgcggctgcg accgcatcgt gccggtggac atctatgtcc
     1681 cgggctgccc gccgaccgcc gaggcgctgc tctacggcat cctgcaactt cagcgccgag
     1741 catccggcgc accggcacgc tggtgaggtg agccatgtcc gaagccctct ctgacgaagc
     1801 cctgctggaa ctggccgagc atatcgccgt ccgccgcgag aacgacgtga tctcgaccca
     1861 ggctgtcggc gagctgacgg tcaatgccac gctgtcgggc gtgatcggcc tgatcgaatt
     1921 cctgcgcaac gatccgaact gccgcttttc cacgctgatc gacattaccg ccgtggacaa
     1981 cccggcacgg cctgcgcgtt tcgacgtggt ctatcacctg ctgtcgatgt atcaaaacca
     2041 gcgcatccgg gttaaggtcc aggtgcgcga ggacgagctg gttcccagcc tgatcggcgt
     2101 attccccggc gccaactggt atgagcgcga ggtcttcgac ctgttcggca tcctgttctc
     2161 gggccattcg gacctgcgcc gcatcctgac cgattacggt ttccgcggcc acccgctgcg
     2221 caaggatttc ccgaccacag gctatgtcga ggtgcgctgg agcgacatcg agaagcgcgt
     2281 ggtctacgag ccggtgaacc tggttcagga ataccgccag ttcgacttcc tgtccccctg
     2341 ggagggcgcg aaatacgtgc ttccgggcga cgagaaggcg ccggaggcga agaagtgacc
     2401 gcagccgcgc agcacgggct gtgcgtcccg catcggattt gagggctgac catggacggc
     2461 gacatccgca agaacagctt agacgacggc tcgatggacg ccctgaccgg cgagcagagc
     2521 attcgcaact tcaacatcaa cttcggcccg cagcacccgg ccgcccatgg gctgctgcgc
     2581 atggtgctgg agctggacgg cgagatcgtc gagcgcgccg atccgcatat cggcctgctg
     2641 caccgcggca ccgagaagct gatggaaagc cgcacctatc tgcagaacct gccctatctg
     2701 gaccggctgg actatgtggc gccgatgaac caggaacatg cctggtgcct ggccatcgag
     2761 cggttgaccg gcacggtgat cccgcgccgc gccagcctga tccgggtgct ctattccgag
     2821 atcggccgca tcctgaacca cctgatgggc gtcaccacgg gcgccatgga cgtgggcgcg
     2881 ctgaccccgc cgctctgggg gttcgaagcg cgcgaagaac tgatgatctt ttacgagcgc
     2941 gcttgcgggg cgcggctgca tgccgcctat ttccgcccgg gcggggtgca tcaggacctg
     3001 ccgcccgacc tcctggacga catcgaggaa tggtgcgagc gcttcccgaa gctggtcgac
     3061 gacctcgaca cgctcctgac ggaaaaccgc atcttcaagc agcgcctggt cgatatcggc
     3121 atcgtgaccg aggccgacgc gctggactgg ggctataccg gcgtgatggt gcgcggctcg
     3181 ggcctggcct gggacctgcg ccgttcgcag ccctatgaat gctatgacga attcgacttc
     3241 cagatcccgg tgggcaggaa cggcgactgc tacgaccgct atctgtgccg catggccgag
     3301 atgcgcgaat cctgcaagat catgcagcag gcggtgcaga agctgcgcgc cgagccggcg
     3361 ggcgacgtgc tggcccgcgg caagctgacc ccgcccaggc gcgccgagat gaagcgcgac
     3421 atggaaagcc tgatccacca cttcaagctt tacaccgaag gcttcaaggt tccggcgggc
     3481 gaggtctatg ccgccgtcga gggccccaag ggcgagttcg gcgtctatct ggtcgccgac
     3541 ggcaccaaca agccctggcg tgccaagctg cgggcgccgg gttttgcgca tctccagtcg
     3601 atcgactgga tgtcgcgcgg ccacatgctg gccgacgttc cggcgatcat cgccacgctc
     3661 gacatcgttt tcggagaggt tgaccgctga tgctgcgccg tctgtccccc atccagccgg
     3721 actccttcga gttcacgc
//