From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Pneumonia virus of mice mRNA for major nucleocapsid protein and
Date: 12 Sep 92 10:03:14 GMT
Distribution: bionet
Checksum: 34564     7

LOCUS       PNV1CBNP     2306 bp ss-mRNA            VRL       12-SEP-1992
DEFINITION  Pneumonia virus of mice mRNA for major nucleocapsid protein and
            nonstructural protein, complete cds.
ACCESSION   D10331 D01100
KEYWORDS    1B protein; 1C protein; N protein; nonstructural protein;
            nucleocapsid protein.
SOURCE      Pneumonia virus of mice (strain 15) cDNA to mRNA , clones 6.19 and
            6.42.
  ORGANISM  Pneumonia virus of mice
            Viridae; ss-RNA enveloped viruses; Negative strand RNA viruses;
            Paramyxoviridae; Pneumovirus.
REFERENCE   1  (bases 1 to 2306)
  AUTHORS   Barr,J., Chambers,P., Pringle,C.R. and Easton,A.J.
  TITLE     Sequence of the major nucleocapsid protein gene of pneumonia virus
            of mice: sequence comparisons suggest structural homology between
            nucleocapsid proteins of pneumoviruses, paramyxoviruses,
            rhabdoviruses and filoviruses
  JOURNAL   J. Gen. Virol. 72, 677-685 (1991)
  STANDARD  full staff_review
REFERENCE   2  (bases 1 to 2306)
  AUTHORS   Chambers,P., Pringle,C.R. and Easton,A.J.
  TITLE     Genes 1 and 2 of pneumonia virus of mice encode proteins which have
            little homology with the 1C and 1B proteins of human respiratory
            syncytial virus
  JOURNAL   J. Gen. Virol. 72, 2545-2549 (1991)
  STANDARD  full staff_review
COMMENT     Data kindly submitted in computer readable form by:
            Andrew J Easton
            Department of Biological Sciences
            University of Warwick
            Coventry CV4 7AL
            U.K.
            Phone:  0203-523525
            Fax:    0203-523701
FEATURES             Location/Qualifiers
     misc_RNA        <1..410
                     /note="gene1"
                     /evidence=EXPERIMENTAL
     CDS             39..380
                     /note="1C protein (of human respiratory syncytial virus)
                     homologue"
                     /product="nonstructural protein"
                     /gene="gene1"
                     /codon_start=1
                     /translation="MGCNVMMELDYGGRAAWLAFHITNFDRSDLETILRGARVCNTWQ
                     DQRLSVYLVGRDCNLLRPFVQAAKFIHNTRRGQTLTHWFTKNIVFSSTGQETEPPIDP
                     TCELLVELISG"
     misc_feature    411..418
                     /note="intergenic region"
                     /evidence=EXPERIMENTAL
     stem_loop       419..430
     misc_RNA        419..989
                     /note="gene2"
     stem_loop       420..437
     CDS             432..902
                     /note="1B protein (of human respiratory syncytial virus)
                     homologue"
                     /product="nonstructural protein"
                     /gene="gene2"
                     /codon_start=1
                     /translation="MSTAMNKFTQTISKPATILNISDSEESGDEAGVGKVSRTTQSSE
                     RWLDLLIEKFQPSLQNITRYINWNFIRICNDRLKKEKMGYIEAKQYVEDMAWMVIASE
                     ADSIEWKCIRRQEKVTGVKYPKFFFVQHKEDWIECTGCIPYPGHDLIYDEDDDD"
     stem_loop       433..450
     misc_feature    990..992
                     /note="intergenic region"
                     /evidence=EXPERIMENTAL
     misc_RNA        993..2213
                     /note="gene3"
     CDS             1025..2206
                     /product="major N protein"
                     /gene="gene3"
                     /codon_start=1
                     /translation="MSLDRLKLNDVSNKDSLLSNCKYSVTRSTGDVTSVSGHAMQKAL
                     ARTLGMFLLTAFNRCEEVAEIGLQYAMSLLGRDDSIKILREAGYNVKCVDTQLKDFTI
                     KLQGKEYKIQVLDIVGIDAANLADLEIQARGVVAKELKTGARLPDNRRHDAPDCGVIV
                     LCIAALVVSKLAAGDRGGLDAVERRALNVLKAEKARYPNMEVKQIAESFYDLFERKPY
                     YIDVFITFGLAQSSVRGGSKVEGLFSGLFMNAYGAGQVMLRWGLLAKSVKNIMLGHAS
                     VQAEMEQVVEVYEYAQKQGGEAGFYHIRNNPKASLLSLTNCPNFTSVVLGNAAGLGII
                     GSYKGAPRNRELFDAAKDYAERLKDNNVINYSALNLTAEERELISQQLNIVDDTPDDD
                     I"
BASE COUNT      726 a    435 c    583 g    562 t
ORIGIN
        1 aggacaagtg aagattgcta gtcccaaaga ccagaatcat gggctgtaat gtgatgatgg
       61 agcttgatta tggtggacga gctgcatggc tggcattcca cataaccaac tttgataggt
      121 cagatttgga aactatccta agaggtgcta gggtgtgcaa tacatggcaa gatcagagac
      181 tctccgtgta ccttgtggga agggattgca atttgttaag accatttgtg caagctgcca
      241 aatttatcca taatactagg agaggccaaa cattaacaca ttggttcaca aaaaatatcg
      301 tgtttagttc tacagggcaa gagacagagc ctcccattga ccccacatgt gagctgttgg
      361 tagagctgat cagtggttaa gatgacagca cattatgtag ttaattaaaa caaagggtag
      421 gacaagtcct aatgtccaca gctatgaaca agttcactca gaccatctct aaacctgcca
      481 ctatcttgaa tatttcagac agtgaagagt cgggcgatga ggcaggggtg ggcaaggtgt
      541 cccgtaccac acagagctca gagaggtggc ttgatttgct cattgaaaag ttccagccga
      601 gcctacaaaa catcactaga tacatcaact ggaacttcat caggatctgc aatgataggc
      661 ttaaaaaaga aaaaatgggg tacattgagg ccaagcaata tgtggaagac atggcttgga
      721 tggtgatagc atctgaggca gacagcattg agtggaagtg cataaggagg caggagaaag
      781 tgactggggt gaaataccca aagttcttct ttgtacaaca caaagaggac tggattgagt
      841 gcacaggatg cattccgtac ccaggccatg acttgatcta tgatgaggat gatgatgact
      901 gagctgactc agatcactcc aaccagcaga gagatccacc acctatagca agtgatgtag
      961 tatttagtct atgattagtt atagaaaaac attaggataa atacacatcc taggccgggc
     1021 caaaatgtct ctagacagat tgaagctcaa tgatgtctca aacaaggata gcctgctgtc
     1081 caactgcaaa tacagtgtta ccagatccac aggcgatgta accagtgtgt ctggtcatgc
     1141 tatgcagaaa gcccttgcaa ggacactcgg catgttctta cttactgcct tcaaccgttg
     1201 cgaagaagtg gcagaaatag ggctccaata tgccatgtcc ttgctaggca gagatgatag
     1261 catcaagata ttaagagaag ccggctacaa tgtaaaatgt gtggacacac agctcaagga
     1321 ctttacaatc aaattacaag gaaaggaata caaaatacaa gtcctagata tagtgggaat
     1381 agatgcagcc aatttagctg atctagagat acaagccaga ggagtggtag caaaagaact
     1441 caaaacagga gccaggctac ctgacaatcg gaggcatgat gcaccagatt gtggtgtgat
     1501 agttctctgt attgcagcat tagttgtttc caaattagct gcaggggaca ggggaggact
     1561 tgatgctgtg gaaagaaggg ctttaaatgt gctgaaagcc gagaaagcca ggtaccccaa
     1621 catggaggtc aagcagatag ctgaaagttt ttatgatctg tttgaaagga agccttatta
     1681 cattgatgtc ttcatcactt ttggcctggc ccagtctagt gtcagaggag gcagcaaagt
     1741 tgaggggctg ttttcaggtc tcttcatgaa tgcatacggg gcaggacaag ttatgctgag
     1801 gtggggttta ctggcaaaat ctgtcaagaa catcatgcta ggccatgcta gtgtacaagc
     1861 tgagatggaa caggtggttg aggtttacga atatgctcag aagcaaggag gggaggcagg
     1921 attctatcac atcagaaata atccaaaagc ttcacttctc tctttgacca attgtcctaa
     1981 tttcaccagt gttgtgcttg gcaatgctgc aggtttaggc atcatagggt catataaggg
     2041 tgctcctagg aatagagaac tctttgatgc tgccaaagat tatgcagaaa gattaaagga
     2101 caacaatgta attaactaca gtgcattaaa cttgactgca gaagaaagag agctgatcag
     2161 ccagcagctg aacattgttg atgacactcc tgatgatgat atttaattaa aaaggtctct
     2221 tcatgaatgc atacggggca ggacaagtta tgctgaggtg gggtttactg gcaaaatctg
     2281 tcaagaacat catgctaggc catgct
//