From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Rhesus macaque polyoma virus agnoprotein (complete cds) and minor
Date: 31 Dec 92 01:40:34 GMT
Distribution: bionet
Checksum: 31296 4

LOCUS       SV4AGP3       578 bp ds-DNA             VRL       17-DEC-1992
DEFINITION  Rhesus macaque polyoma virus agnoprotein (complete cds) and minor
            structural protein VP2 (5' end) genes.
ACCESSION   M99363
KEYWORDS    agnoprotein; enhancer; minor structural protein VP2.
SOURCE      Rhesus macaque polyomavirus (strain EK) (library: ATCC VR-820) DNA.
  ORGANISM  Rhesus macaque polyomavirus
            Viridae; ds-DNA nonenveloped viruses; Papovaviridae;
            Polyomaviruses.
REFERENCE   1  (sites)
  AUTHORS   van Heuverswyn,H. and Fiers,W.
  TITLE     Nucleotide sequence of the Hind-C fragment of Simian Virus 40 DNA:
            comparison of the 5'-untranslated region of wild-type virus and of
            some deletion mutants
  JOURNAL   Eur. J. Biochem. 100, 51-60 (1979)
  STANDARD  full automatic
REFERENCE   2  (bases 1 to 578)
  AUTHORS   Ilyinskii,P.O., Daniel,M.D., Horvath,C. and Desrosiers,R.C.
  TITLE     Genetic analysis of simian virus 40 from brains and kidneys of
            macaque monkeys
  JOURNAL   J. Virol. 66, 6353-6360 (1992)
  STANDARD  full automatic
FEATURES             Location/Qualifiers
     enhancer        109..146
                     /citation=[1]
                     /note="Incomplete 72bp repeat. Corresponds to 107-144 of
                     SV40 strain 776"
     variation       replace(146..149,"tt")
                     /citation=[1]
                     /note="absent in SV40 776"
     misc_feature    149..160
                     /citation=[1]
                     /note="corresponds to nucleotides 252-263 of SV40 strain
                     776"
     repeat_unit     164..202
                     /citation=[1]
                     /note="Identical to nucleotides 203-241 of this SV40
                     clone. Corresponds to nucleotides 231-269 of SV40 clone
                     776"
     repeat_unit     203..241
                     /citation=[1]
                     /note="Identical to nucleotides 164-202 of this SV40
                     clone. Corresponds tonucleotides 231-269 of SV40 strain
                     776"
     variation       replace(complement(506),"t")
                     /citation=[1]
                     /note="nucleotide 535 in SV40 strain 776"
     variation       replace(510,"c")
                     /citation=[1]
                     /note="nucleotide 538 in SV40 strain 776"
     CDS             307..495
                     /product="agnoprotein"
                     /codon_start=1
                     /translation="MVLRRLSRQASVKVRRSWTESKKTAQRLFVFVLELLLQFCEGED
                     TVDGKRKKPERLTEKPES"
     CDS             534..578
                     /partial
                     /note="partial"
                     /product="minor structural protein VP2"
                     /codon_start=1
                     /translation="MGAALTLLGDLIATV"
BASE COUNT      146 a    125 c    155 g    152 t
ORIGIN      
        1 cggcctcggc ctctgcataa ataaaaaaaa ttagtcagcc atggggcgga gaatgggcgg
       61 aactgggcgg agttaggggc gggatgggcg gagttagggg cgggactatg gttgctgact
      121 aattgagatg catgctttgc atacttggta actgacacac ggagcctggg gactttccac
      181 accctaactg acacacattc cagcctgggg actttccaca ccctaactga cacacattcc
      241 acagctggtt ctttccgcct cagaaggtac ctaaccaagt tcctctttca gaggttattt
      301 caggccatgg tgctgcgccg gctgtcacgc caggcctccg ttaaggttcg taggtcatgg
      361 actgaaagta aaaaaacagc tcaacgcctt tttgtgtttg ttttagagct tttgctgcaa
      421 ttttgtgaag gggaagatac tgttgacggg aaacgcaaaa aaccagaaag gttaactgaa
      481 aaaccagaaa gttaactggt aagttgagta tttttgtctt ttatttcagg tccatgggtg
      541 ctgctttaac actgttgggg gacctaattg ctactgtg
//