From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: San Miguel sea lion virus RNA-dependent RNA polymerase gene, 3' end
Date: 24 Jul 92 10:10:04 GMT
Distribution: bionet
Checksum: 33928     6

LOCUS       SMS1POLCAP   2745 bp ss-RNA             VRL       24-JUL-1992
DEFINITION  San Miguel sea lion virus RNA-dependent RNA polymerase gene, 3' end
            and capsid protein gene, complete cds.
ACCESSION   M87481
KEYWORDS    RNA dependent RNA polymerase; capsid protein.
SOURCE      San Miguel sea lion virus (serotype 1) cDNA to genomic RNA.
  ORGANISM  San Miguel sea lion virus
            Viridae; ss-RNA nonenveloped viruses; Caliciviridae.
REFERENCE   1  (bases 1 to 2745)
  AUTHORS   Neill,J.D.
  TITLE     Nucleotide sequence of the capsid protein gene of two serotypes of
            San Miguel sea lion virus: Identification of amino acid sequences
            among calicivirus capsid proteins
  JOURNAL   Virus Res. 24, 221-222 (1992)
  STANDARD  full automatic
FEATURES             Location/Qualifiers
     CDS             1..120
                     /product="RNA-dependent RNA polymerase"
                     /codon_start=1
                     /translation="EFHQAVQAYNGYFNGTEDQPSQIALASGGTGFGGEVFEN"
                     /partial
     CDS             126..2234
                     /product="capsid protein"
                     /gene="capsid protein precursor gene"
                     /codon_start=1
                     /translation="MATTHTLLSFDDLEFLLHKKDLTDLYGERCGTLNLVINPYDLFL
                     PDDLDDDWCDDPFNCCFSDVYTSIGTEYSYIDPPDLIYEEHCATNGHWPDGTPCEPIL
                     PPFVIEGTHHYYATKPGEAVSGILSKLGSAWDPDLQSTVDTKPDFVFRAESDGPGGAD
                     IVTEEQGTVVQQQPVPAQSALTTLAAASTGKTVDCEWTTFFSYHTAVNWSTTEAQGKI
                     LFSRALSPELNPYLRHISSLYSTWSGGIDVRFTVSGSGVFGGKLAALIVPPGIEPVES
                     PTMLQYPHVLFDARQTEPVIFTIPDIRKTLYHSMDDTDTTRLVIMVYNELINPYEQSE
                     PKSSCSITVETRPSSDFTFSLLKPPGSLLKHGSIPSDLIPRNSRHWMGNRWWSTIDGF
                     VVQPRVFQSNRHFDFDSTTTGWSTPYYIPIEVTLEKLDRGGQYFKVTDTEKSLVPGLP
                     DGWPDTTIPTAMTASNGNYDYTVAEYRITNNGTHFKGFYIMGNLTTKVKGSDNLGETQ
                     QTSRTLFASVGNYKDQNTINPTHKITSNSLVVYDANNVSAATAKTTTWHSTMSHLGYV
                     LVDESPVGSDSTKVVRIATLPEAFTNGGNFPVFFTNKIQIGHFDRAHTKCFNSQVLMT
                     SQKLAENHYTLPPDSLLVYRITDAASSWFDLGINHDGFSYVGISTIPELDFPLTFNLH
                     GVQLAKVKLASKVKTSKTTI"
     CDS             2231..2563
                     /function="unknown"
                     /note="ORF"
                     /codon_start=1
                     /translation="MNYANFGLELFKSIADAAYEGKRVELAGKTLALKNRALDTERDY
                     NYARLAFEKQRFETNADLRVNGDLYRMQALRAAGYRLNPFSNGHQIYADEAAAANLHS
                     YYGFYKTD"
     3'UTR           2564..2745
BASE COUNT      738 a    695 c    592 g    720 t
ORIGIN
        1 gaattccatc aagccgttca ggcttacaac gggtatttta atggtaccga agaccagcca
       61 agccagatcg cgttagcgag tggtggaact gggttcggtg gtgaggtgtt tgagaattag
      121 ccactatggc tactactcac acgcttctgt cgtttgacga cctcgaattt ctcttacaca
      181 agaaagacct aaccgatctc tacggagaga ggtgtggcac actcaatttg gtcatcaacc
      241 cttacgacct ctttcttcca gatgatttag atgatgattg gtgtgatgat cctttcaatt
      301 gctgtttctc tgatgtctat acttctatag gtaccgaata cagttatatt gatcctcctg
      361 acctcatcta tgaagagcac tgtgcaacaa acggccattg gccggatgga actccttgcg
      421 agcccattct tcctccgttt gtcattgagg gcacccatca ctactacgcc acaaaacctg
      481 gcgaggcggt gagcgggata ctctctaagc tcggatctgc ctgggatcct gaccttcagt
      541 ccacagtaga cacgaagccg gacttcgtgt ttagggcaga atcggacggt cctggtggag
      601 ctgacatagt gactgaggaa caaggcactg tcgttcaaca acaaccagtg ccagcacaat
      661 ctgctctgac aacccttgcg gcggcgtcaa ctggtaaaac ggtcgactgc gagtggacaa
      721 ccttcttctc gtaccacacc gctgtgaatt ggtcaacaac tgaggctcaa gggaagattc
      781 tcttctcccg agctctgagc cctgagctga atccctatct taggcacatc tcatctcttt
      841 actctacctg gtctggcggg attgatgtga ggttcactgt gtctggatct ggtgtcttcg
      901 gcggtaagct ggccgcgtta atagtacccc ctggtattga accggtggaa tcacccacca
      961 tgcttcaata tccacacgta ctatttgacg ctcgtcagac tgagccggtg attttcacca
     1021 tcccggacat acggaagaca ctctaccact caatggatga caccgacaca acaagacttg
     1081 ttatcatggt ttacaacgag ctcataaacc cttatgagca atctgaaccc aagtcaagct
     1141 gttccatcac cgttgagact aggccctcat ctgacttcac attttcccta ctcaaacccc
     1201 caggttccct gttgaaacac ggttcaatcc catctgatct gatcccaaga aactcgcggc
     1261 actggatggg aaatcgttgg tggtcaacca tcgacggttt cgttgttcag ccccgcgtgt
     1321 tccaatcaaa taggcacttt gactttgact ccacaacaac tggttggtca accccctatt
     1381 acatcccaat tgaagtgaca cttgaaaagc ttgaccgggg tggtcagtac ttcaaagtga
     1441 ctgacactga aaagtcattg gtacccggac tacctgacgg ttggccggac acaacaattc
     1501 ccacagcaat gactgcgtca aacgggaact acgactatac tgtcgctgaa tacaggatca
     1561 ccaacaatgg aacccacttc aaagggttct acatcatggg gaacctcaca accaaggtca
     1621 aaggaagtga caacctgggt gaaactcagc aaacgtcgag aactctgttt gcttctgttg
     1681 ggaattataa agatcaaaac accatcaacc caacgcacaa aatcacatcc aattccctgg
     1741 ttgtttatga tgccaacaat gtgtctgcag caacagccaa aactacgacg tggcactcaa
     1801 ccatgtcgca tttgggctac gtcctcgttg acgaaagccc agttggtagt gactcaacaa
     1861 aggttgtcag aatagcaacc cttcctgagg ctttcacaaa tggtggtaac tttcctgtgt
     1921 tcttcacaaa caaaatccaa attggtcact ttgatagggc acacacaaaa tgtttcaaca
     1981 gccaagttct aatgacatcc cagaagttgg cggagaacca ctacacccta ccccctgact
     2041 ccttgctggt ctataggatt actgacgcag catcgtcgtg gtttgatctt ggtatcaatc
     2101 acgatgggtt cagctacgtt ggtatttcca ccatccctga acttgacttt cctcttacct
     2161 tcaaccttca tggagtgcag ctagcaaagg ttaagctagc gtccaaggtc aaaaccagta
     2221 agaccacaat atgaattatg caaattttgg attagaatta ttcaaatcaa ttgctgatgc
     2281 cgcttacgaa ggtaagcgcg ttgaattggc tggaaaaacc ctggcactga agaatcgcgc
     2341 tctcgacaca gagagagatt acaattatgc cagacttgca tttgaaaagc aaagattcga
     2401 aaccaatgca gacctgcgcg tgaatggaga tctgtaccgg atgcaagcgc tgcgcgctgc
     2461 agggtatagg ttgaacccat tctccaacgg tcaccaaatt tacgcggacg aagctgccgc
     2521 tgcaaatctg cactcttact atggcttcta caaaacggac tagttccaat ctgcttaaca
     2581 acttctctat cctttagtaa atagcttact tccttttatt agttaatagt tattttagtt
     2641 taagtgtttt taaattttca cctctgtact aatcaactaa ttaatgggat aattggtctt
     2701 agtattttag actgtagtat agtttggttg gtagattgca ttagg
//