From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: D.pseudoobscura rh1 opsin gene
Date: 21 Jul 92 10:04:10 GMT
Distribution: bionet
Checksum: 38193     6

LOCUS       DRORH1OP     2466 bp ds-DNA             INV       21-JUL-1992
DEFINITION  D.pseudoobscura rh1 opsin gene
ACCESSION   X65877
KEYWORDS    opsin gene; rh1 opsin; visual pigment.
SOURCE      Drosophila pseudoobscura DNA.
  ORGANISM  Drosophila pseudoobscura
            Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
            Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
            Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
REFERENCE   1  (bases 1 to 2466)
  AUTHORS   Carulli,J.P. and Hartl,D.L.
  TITLE     Variable rates of evolution among Drosophila opsin genes
  JOURNAL   Genetics (1992) In press
  STANDARD  full automatic
COMMENT     *source: strain=Apple Hill; *source: clone_library=EMBL4 (from
            Stephen W. Schaeffer); *source: chromosome=2; *source: sub_clone=
            dprh1.2;
            See also X65877-81
            From EMBL    entry DPRH1OP;  dated 12-JUN-1992.
FEATURES             Location/Qualifiers
     mRNA            join(1..474,532..1095,1472..1619,1690..1967,2028..2466)
                     /gene="rh1 opsin"
     CDS             join(467..474,532..1095,1472..1619,1690..1967,2028..2154)
                     /gene="rh1 opsin"
                     /codon_start=1
                     /translation="MDSFAAVATQLGPQFAAPSNGSVVDKVTPDMAHLISPYWDQFPA
                     MDPIWAKILTAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMIT
                     NTPMMGINLYFETWVLGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAGRP
                     MTIPLALGKIAYICFMSTIWCCLAPVFGWSRYVPEGNLTSCGIDYLERDWNPRSYLIF
                     YSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKMNVKSLRSSEDADKSAEGKLA
                     KVALVTISLWFMAWTPYLVINCMGLFKFEGLTPLNTIWGACFAKSAACYNPIVYGISH
                     PKYRLALKEKCPCCVFGKVDDGKSSEAQSQATTSEAESKA"
     exon            1..474
                     /number=1
     prim_transcript 1..2466
                     /gene="rh1 opsin"
     intron          475..531
                     /number=1
     exon            532..1095
                     /number=2
     intron          1096..1471
                     /number=2
     exon            1472..1619
                     /number=3
     intron          1620..1689
                     /number=3
     exon            1690..1967
                     /number=4
     intron          1968..2027
                     /number=4
     exon            2028..2466
                     /number=5
BASE COUNT      726 a    561 c    540 g    639 t
ORIGIN
        1 gggcacaatg tcaaagagac gagcccgata catcccataa tcgagaggtg gtcgaaagaa
       61 gcctctgaaa tgtctaacga ttgacattgg cccattgcaa tgggctatta tgattataag
      121 cgaaaagctg tctgcacttt tgtagcatgt acgtatgtat atatttttag gtgcactggc
      181 gtcttggcta attgaatttg aaccctacca gagggggttc ttttaagaat ctgcaaggaa
      241 aactataaaa gccccagagc caccagcgga cgttgcaggt ttcgaacgac caatcgccgc
      301 gaatagtccg ctccagtgaa atattcaaaa taaatttagg gaatccttta atgtaaaaag
      361 tttttgaaat atatctaacc gaatttgcaa gctttttatg tagaaagagt gagatttata
      421 ggcgggatat agtgacacac aaataactgg gaaaaataaa atcacaatgg ataggtagga
      481 agatctacat actcgtagat gatgggatga cctataccta ttttgttgca gctttgcagc
      541 agtagccaca caattggggc cgcaattcgc agccccttcg aatggttcgg tggtggataa
      601 ggttaccccc gacatggcac atctaatcag cccatactgg gatcagttcc ccgccatgga
      661 ccccatctgg gccaagatcc ttacggccta tatgattatt attggaatga tttcctggtg
      721 tggaaatggc gtggtgatct acatctttgc caccacaaag tcactgcgta ctcctgcaaa
      781 cctcctggtc atcaacctgg ccatttccga ctttggcatc atgatcacca acacgcccat
      841 gatgggcatc aatctgtact ttgagacctg ggtcctcgga cccatgatgt gcgacatcta
      901 cgcgggtctg ggctctgcct ttggctgcag ctccatctgg tccatgtgca tgatctccct
      961 ggatcgctac caggtcatcg tcaagggcat ggctggacga ccgatgacca ttccactggc
     1021 attgggcaag attgcctaca tctgcttcat gtcgaccatt tggtgctgcc tggcccccgt
     1081 cttcggctgg agcaggtaag aaggattctt tgtattttaa ggggtttctg gaatggaaaa
     1141 gcaggggact tttcctccat agagagggag acagttgtct ctcaaacgat ggtcaacaca
     1201 ggcagaaatg taaagcaacc gaggagaggt gctgcctacg cgagacactt gtatccaaag
     1261 acgatttaaa agtgttttga agcggaaaaa gctgtgttgc agctatggaa actgtctgct
     1321 agtgaaagaa tcgctcaagt ataggctgtt ctaagagaga attttagtgg tgaaaatact
     1381 caacaatcag aaagctgtgt ctttgaagta cctctacgca tattatagct aaaatatatt
     1441 ttagtaaaat cttgtttatc catttctcaa ggtatgtgcc ggagggtaac ttgacatcgt
     1501 gtggtattga ctacttggaa cgcgactgga atccacgctc gtacctgatc ttctactcga
     1561 tctttgtcta ctatattccg ctcttcctca tctgctactc ctattggttc atcattgctg
     1621 taagaacaga cacagacaga cccctatatc acttagtata tcctctatga taactgttat
     1681 tttgtttagg ccgtttccgc tcacgagaag gccatgaggg agcaggccaa gaagatgaat
     1741 gtcaagtccc tgcgctcctc cgaggatgcc gacaagagtg ctgagggcaa gcttgccaaa
     1801 gtggctctgg tcaccatctc cctgtggttc atggcgtgga ctccatactt ggtgatcaac
     1861 tgcatgggac tgttcaaatt tgagggtcta actccactaa ataccatctg gggtgcctgc
     1921 tttgccaagt cggcggcctg ctacaatccc attgtctatg gcattaggtg ggtctatatc
     1981 tcatacgatt tcgtctatga tctctgatcc tatctcctgt tttatagcca tcctaagtat
     2041 cgcctggctt tgaaggagaa gtgcccttgc tgtgtctttg gcaaggtcga tgatggcaaa
     2101 tcgagcgaag cccaatcgca ggcaaccacc agcgaggccg aatccaaggc ataaaaagga
     2161 aaaacaagat acatttctct tataacaaca gaacaaagca acacatctta caacagcaac
     2221 aacaacaaca agaacaacaa gaacagcaac aacaacaaga acaacagcaa cagaacgaaa
     2281 cgatttcgaa tactaacaac atcaaccaaa aaatagaaca acacctctat ggaaaaatgt
     2341 gtaaatttcc tcatttacaa atttcttgcc tccaatatct aaaagcaaca aatctttatc
     2401 taaaaaacac ttctgcaatg tcactaaaga cgaaacaaac aaaaaagggc ttaaacaaaa
     2461 aaaaat
//