From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Mouse full-length intracisternal A-particle encoding gag and pol
Date: 22 Jul 92 10:03:19 GMT
Distribution: bionet
Checksum: 49469    12

LOCUS       MUSFLIAP     7096 bp ds-DNA             ROD       22-JUL-1992
DEFINITION  Mouse full-length intracisternal A-particle encoding gag and pol
            proteins, complete cds.
ACCESSION   M17551 K01572 K01573
KEYWORDS    gag protein; intracisternal A particle; long terminal repeat;
            pol protein; pseudogene.
SOURCE      Mouse (strain BALB/c) embryo DNA, clone MIA14.
  ORGANISM  Mus musculus
            Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
            Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
REFERENCE   1  (sites)
  AUTHORS   Kuff,E.L., Feenstra,A., Lueders,K., Smit,L., Hawley,R., Hozumi,N.
            and Shulman,M.
  TITLE     Intracisternal A-particle genes as movable elements in the mouse
            genome
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 80, 1992-1996 (1983)
  STANDARD  full staff_review
REFERENCE   2  (sites)
  AUTHORS   Mietz,J.A., Grossman,Z., Lueders,K.K. and Kuff,E.L.
  TITLE     Nucleotide sequence of a complete mouse intracisternal A-particle
            genome: Relationship to known aspects of particle assembly and
            function
  JOURNAL   J. Virol. 61, 3020-3029 (1987)
  STANDARD  full staff_review
COMMENT     Draft entry and computer readable copy of sequence [1] kindly
            provided by Mietz,J.A. 30-JUN-1988.
            [1] shows that IAP long terminal repeats exist in two rearranged
            nonfunctional Ig kappa light chain genes.
FEATURES             Location/Qualifiers
     LTR             1..337
                     /note="5' long terminal repeat"
     CDS             594..3077
                     /product="gag protein"
                     /codon_start=1
                     /translation="MFGLEFFLVLEALLFLFTCYQVVKAGRILDEIQDKLSEVKRGER
                     VGTKRKYGTQNKYTGLSKGLEPEEKLRLGRNTWREIRRKRGKREKKKDQLAEVSRKRS
                     LCSSLDGLGEPALSSSEADEEFSSEETDWEEEAAHYEKKGYQPGKVLANQLRKPKAAG
                     EGQFADWPQGSRLQGPPYAESPPCVVRQPCAERQCAKRQCADSFIPREEQRKIQQAFP
                     VFEGAEGGRVHAPVEYLQIKELAESVRKYGTNANFTLVQLDRLAGMALTPADWQTVVK
                     AALPMMGKYMEWRALWHETAQAQARANAAALTPEQRDWTFDLLTGQGAYSADQTNYHW
                     GAYAQISSTAIRRWKGLSRAGETTGQLTKVVQGPQESFSDFVARMTEAAERIFGESEQ
                     AAPLIEQLIYEQATKECRAAIAPRKNKGLQDWLRVCRELGGPLTNAGLAAAILQSQNR
                     SMSRNDQRTCFNCGKPGHFKKDCRAPDKQGGTLTLCSKCGKGYHRADQCRSVRDIKGR
                     VLPPPDSQSAYVPKNGSSGPRSQGLKDMGTGLSGPRKQSERRPRKTHKVDLRAASDFL
                     LMPQMSIQPVPVEPIPSLPLGTMGLILGRGSASTLQGLVVHPELWIVNIPQKYQVLCS
                     SPKGVFSISKGDRIPQLLLLLPDNTREKSAGPEIKKMGSSGNDSAYLVVSLNDRPKLR
                     LKINGKEFEGILDTGADKSIISTHWWPKAWPTTESSHSLQGLGYQSCPTISSVALTWE
                     SSEGQQGKFIPYVLPLPVNLWGRDIMQHLGLILSNENAPSGGYSAKAKNIMAKMGYKE
                     GKGLGHQEQGRIEPISPNGNQDRQGLGFP"
     CDS             3041..5645
                     /pseudo
                     /gene="pseudo-pol"
                     /codon_start=1
     LTR             6759..7096
                     /note="3' long terminal repeat"
BASE COUNT     1989 a   1587 c   1675 g   1845 t
ORIGIN
        1 tgttgggagc cgcgcccaca ttcgccgtta caagatggcg ctgacagctg tgttctaagt
       61 ggtaaacaaa taatctgcgc atatgccgag ggtggttctc tactccatgt gctctgcctt
      121 ccccgtgacg tcaactcggc cgatgggctg cagccaatca gggagtgaca cgtcctaggc
      181 gaaatataac tctcctaaaa aagggacggg gtttcgtttt ctctctctct tgcttcttac
      241 actcttgctc ctgaagatgt aagcaataaa gttttgccgc agaagattct ggtctgtggt
      301 gttcttcctg gccgggcgtg agaacgcgtc taataacaat tggtgaccga attccgggac
      361 gagaaaaaac tcgggactgg cgcaaggaag atccctcatt ccagaaccag aactgcgggt
      421 cgcggtaata aaggttcccg taaagcagac tgttaagaag gattcaactg tatgaattca
      481 gaacttttca gctggggaac gagagtacca gtgagtacag ctttacgagg taagtctgat
      541 cttgaacttt ctaaggaaat tcaagacagt ctatcagaag taaagtggag aaaatgtttg
      601 gccttgaatt ttttctagtg ttagaagccc ttttgttcct tttcacatgt tatcaagtgg
      661 ttaaggcagg gcggattcta gatgaaattc aggacaagct atcagaagta aagcggggag
      721 agagagtagg aacaaagagg aaatatggta cacaaaataa gtatacaggc ctttccaagg
      781 gtcttgaacc cgaggaaaag ttaaggttag gtaggaatac ctggagagag attagaagaa
      841 aaagaggaaa aagggaaaag aagaaagatc aattagcgga ggtctctagg aaaaggagcc
      901 tgtgctcatc gctggatggg ctcggggagc cagctcttag tagctctgaa gcagatgaag
      961 aattctcctc tgaagaaaca gactgggagg aagaagcagc tcattatgag aaaaaagggt
     1021 accagccagg taaagtgcta gctaatcagt taaggaagcc aaaagcggct ggcgaaggcc
     1081 agtttgctga ttggcctcag ggcagtcggc ttcaaggtcc gccctatgcg gagtccccgc
     1141 cctgcgtagt gcgtcagccc tgcgcagaga ggcagtgcgc aaagaggcag tgcgcagact
     1201 cattcattcc cagagaggaa caaaggaaaa tacaacaggc atttccggtc tttgaaggag
     1261 ccgagggtgg gcgtgtccac gctccggtag aatacttaca aattaaagag cttgccgagt
     1321 cggtccgtaa atacggaacc aatgctaatt ttaccttggt gcagttagac aggctcgccg
     1381 gcatggcact aactcctgct gactggcaaa cggttgtaaa agccgctctc cctatgatgg
     1441 gcaaatatat ggaatggaga gctctttggc atgaaactgc acaagcgcag gcccgagcaa
     1501 acgcagctgc tttgactcca gagcagagag attggacttt tgacttgtta acgggtcagg
     1561 gagcttattc tgctgatcaa acaaactacc attggggagc ttatgcccag atttcttcca
     1621 cggctattag gcgctggaag ggcctctccc gagcaggtga aaccactggt caattaacaa
     1681 aagttgtcca gggacctcag gaatccttct cagattttgt ggccagaatg acagaggcag
     1741 cagagcgtat ttttggagag tcagagcaag ctgcgcctct catagaacag ctaatctatg
     1801 agcaagccac aaaggagtgc cgagcggcca tagccccaag aaagaacaaa ggcttacaag
     1861 actggctcag ggtctgtcga gagcttgggg gacctctcac caatgcaggc ttagcggccg
     1921 ccatcctcca atctcagaac cgctccatga gcagaaatga tcagaggaca tgttttaatt
     1981 gcggaaagcc tgggcatttt aagaaagatt gcagagctcc agataaacag ggagggactc
     2041 tcactctttg ctctaagtgt ggcaagggtt atcatagagc tgaccagtgt cgctctgtga
     2101 gggatataaa gggcagagtc cttcccccac ctgatagtca atcagcttat gtgccaaaaa
     2161 acgggtcatc gggccctcgg tcccagggcc tcaaagatat gggaaccggt ttgtcaggac
     2221 ccaggaagca gtcagagagg cgacccagga agacccacaa ggtggacctg cgtgccgcct
     2281 ccgacttcct attaatgcct caaatgagta ttcagccggt gccagtggag cctataccat
     2341 ccttgcccct gggaaccatg ggccttattc tcggccgggg ttcagcttct accttgcagg
     2401 gcttagtagt ccaccctgag ttatggattg tcaacattcc ccagaaatac caggtcctgt
     2461 gctcaagccc taagggcgtt ttttctatta gtaaaggaga taggatacct cagctgctgc
     2521 tgctcctccc tgataatacc agggagaaat ctgcaggacc tgagataaag aaaatgggct
     2581 cctcaggaaa tgattctgcc tatttggttg tatctttaaa tgatagacct aagctccgcc
     2641 ttaagatcaa cggaaaagag tttgaaggca tccttgatac cggagcagat aaaagtataa
     2701 tttctacaca ttggtggccc aaagcatggc ccaccacaga gtcatctcat tcattacagg
     2761 gcctaggata tcaatcatgt cccactataa gctccgttgc cttgacgtgg gaatcctctg
     2821 aaggacagca agggaaattc ataccttatg tgctcccact cccggttaac ctctggggaa
     2881 gggatattat gcagcatttg ggccttattt tgtccaatga aaacgcccca tcgggagggt
     2941 attcagctaa agcaaaaaat atcatggcaa agatgggtta taaagaagga aaagggttag
     3001 gacatcaaga acagggaagg atagagccca tctcacctaa tggaaaccaa gacagacagg
     3061 gtctgggttt tccttagcgg ccattggggc agcacgaccc ataccatgga aaacagggga
     3121 cccagtgtgg gttcctcaat ggcacctatc ctctgaaaaa ctagaagctg tgattcaact
     3181 ggtagaggaa caattaaaat taggccatat tgacccttct acctcacctt ggaatactcc
     3241 aatttttgta attaagaaaa agtcaggaaa gtggagactg ctccatgacc tcagacccat
     3301 taatgagcaa atgaacttat ttggcccagt acagaggggt ctccctgtac tttccgcctt
     3361 accacgtggc tggaatttaa ttattataga tattaaagat tgtttctttt ctataccttt
     3421 gtgtccaaga gataggccca gatttgcctt taccatcccc tctattaact cagatgaacc
     3481 tgataacagg tatcaatgga aggtcttacc acagggaatg tccaatagtc ctacaatgtg
     3541 ccaactttat gtgcaagaag ctcttttgcc agtgagggaa caattcccct ctttaatttt
     3601 gctcctttac atggatgaca tcctcctgtg ccataaagaa ctcaccatgc tacaaaaggc
     3661 atatcctttt ctacttaaaa ctttaagtca gtggggtcta cagatagcca cagaaaaggt
     3721 ccaaatttct gatacaggac aattcttggg ctctgtggtg tccccagata agattgtgcc
     3781 ccaaaaggta gagataagaa gagatcacct ccatacctta aataattttc aaaagctgtt
     3841 gggagatatt aattggctca gacctttttt aaagattcct tccgctgagt taaggccttt
     3901 gttttggtat ttagaaggag atcctcatat ctcctcccct aggactctta ctctagctgc
     3961 taaccaggcc ttacaaaaag tggaaaaggc cttacagaat gcacaattac aagctattga
     4021 ggattcgcaa cctttcagtt tgtgtgtctt taagacagca caattgccaa ccgcagtttt
     4081 gtggcagaat gggccattgt tgtggatcca tccaaacgta tccccagcta aaataataga
     4141 ttggtatcct gatgcaattg cacagcttgc ccttaaaggt ctaaaagcag caatcaccca
     4201 ctttgggcga agtccatatc ttttaattgt accttatacc gctgcacagg ttcaaacctt
     4261 ggcagccaca tctaatgatt gggcagtttt agttacctcc ttttcaggaa aaatagataa
     4321 ccattatcca aaacatccaa tcttacagtt tgcccaaaat caatctgttg tgtttccaca
     4381 aataacagta agaaacccac ttaaaaatgg gattgtggta tatactgatg gatcaaaaac
     4441 tggcataggt gcctatgtgg ctaatggtaa agtggtatcc aaacaatata atgaaaattc
     4501 acctcgaatg gtagaatgtt tagtggtctt agaagtttta aaaacctttt tagaacccct
     4561 taatattgtg tcagattcct gttatgtggt taatgcagta aatcttttag aaggtggctg
     4621 gagtgattaa gccttccagt agagttgcca atatttttca gcaaatacaa ttagttttgt
     4681 tatctagatc tcctgtttat attactcatg ttagagccca ttcaggccta cctacctcgg
     4741 ccccatggct ctcgggaaat gatttggcag ataaggccac ctaaagtggt ggctgctccc
     4801 tatcatcccc ggtagaggct gcccaagaaa ttttcataac aacttttcat gtgacggctg
     4861 aacattaccg cagtcgaaac tccttgacaa gaaaagaagc ccgtgacatt gttactcaat
     4921 gtcaaagctg ctgtgagttc ttgccagttc ctcatgtggg aattaaccca cgcggtattc
     4981 gacctctaca ggtctggcaa atggatgtta cacatgtttc ttcctttgga aaacttcaat
     5041 atctccatgt gtccattgac acatgttctg gcatcatgtt tgcttctccg ttaaccggag
     5101 aaaaagcctc acatgtgatt caacattgtc ttgaggcatg gagtgcttgg ggaaaaccca
     5161 gactccttaa gactgataat ggaccagctt atacatctca aaaatttcag cagttctgcc
     5221 gtcagatgga cgtgacccac ctgactggac ttccatacaa ccctcaagga cagggtattg
     5281 ttgagcgtgc gcatcgcacc ctcaaaacct atcttataaa acagaagagg gaattggaag
     5341 agattttacc ccagcaccaa gagagtcttt ctatggcact ctttacactc aattttttaa
     5401 atattgatgt tcatggccat actgcggctg aacgtcaatg ttcagagcca gataggccca
     5461 atgagatggt taaatggaaa aatgtccttc ataataaatg gtatggcccg gatcctattt
     5521 tgataagatc caggggagcg gtctgtgttt tccacagaat gaagacaacc cattttggat
     5581 accagaaaga ctcacccgaa aaatccagac tgaccaaggg aatacctgat gtccctcgtc
     5641 tttggtgatg tccagggcgt tcaataataa aaagagagcc agcgttcggg ggactaatgt
     5701 cgacatttcc actcccaatg acggtgatgt ataatgctca agtattctct tgctttttta
     5761 tcactaacta ggaactgggt ttagccttaa ttcagacagc cttggctctg tctggacagg
     5821 tccagacgac tgacaccatt aacactttgt cagcctcagt gactacagtc atagatgaac
     5881 aggcctcagc taatgtcaag atacagagag gtctcatgct ggttaatcaa ctcaatagat
     5941 cttgtccaga tacaactaga tgtattatga caaataactc agctggggtg taaacaaaag
     6001 tttccgagat tgtgtgttac ttccattcag tatgttaaat ttactagggc agctaatttg
     6061 tcaaaaagtc tttttcagta tatgttacag aattggatgg ctgaatttga accagatcct
     6121 tcgggaattg agacttcagg tcaactccac gcgcttggac ctgtccctga ccaaaggatt
     6181 acccaattgg atctcctcga gcattttctt tctttaaaaa atgggtggga ttaatattat
     6241 ttggagatac actttgctgt ggattagtgt tgcttctttg attggtctgt aagcttaagg
     6301 cccaaactag gagagacaag gtggttattg cccaggtgct tgcaggacta gaacatggag
     6361 cttcccctga tatatctatg cttaggcaat aggtcgctgg ccactcagct cttatatccc
     6421 atgaggctag tctcattgca cgggatagag gtgagtgtgc ttcagcagcc cgagagagtt
     6481 gcacggctaa gcactgcaat ggaaaggctc tgcggcatat atgagcctat tctagggaga
     6541 catgtcatct ttcatgaagg ttcagtgttc ctagttgccc ttccccaggc aaaacgacac
     6601 ggagcaggtc agggttggct ctgggtaaaa gcctgtgagc ctcaagagct aatcctgtac
     6661 atggctcctt tgacctacac actggggatt tgacctctat ctccactctc attaatatgg
     6721 gtgggcctat ttgctcttat taaaaggaaa gggggagatg ttgggagccg cgcccacatt
     6781 cgccgttaca agatggcgct gacagctgtg ttctaagtgg taaacaaata atctgcgcat
     6841 atgccgaggg tggttctcta ctccatgtgc tctgccttcc ccgtgacgtc aactcggccg
     6901 atgggctgca gccaatcagg gagtgacacg tcctaggcga aatataactc tcctaaaaaa
     6961 gggacggggt ttcgttttct ctctctcttg cttcttacac tcttgctcct gaagatgtaa
     7021 gcaataaagt tttgccgcag aagattctgg tctgtggtgt tcttcctggc cgggcgtgag
     7081 aacgcgtcta ataaca
//