From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Gallus gallus alpha-3 type IX collagen mRNA, complete cds.
Date: 24 Jul 92 10:05:39 GMT
Distribution: bionet
Checksum: 02644     7

LOCUS       CHK3ACOL     2416 bp ss-mRNA            VRT       24-JUL-1992
DEFINITION  Gallus gallus alpha-3 type IX collagen mRNA, complete cds.
ACCESSION   M83179
KEYWORDS    alpha-3 type IX collagen.
SOURCE      Gallus gallus (library: day 3,4,5 chicken embryonic limb cDNA in
            SWAJ4 vector) embryo cDNA to mRNA.
  ORGANISM  Gallus gallus
            Eukaryota; Animalia; Chordata; Vertebrata; Aves; Neornithes;
            Neognathae; Galliformes; Phasianidae.
REFERENCE   1  (bases 1 to 2416)
  AUTHORS   Har-El,R., Sharma,Y.D., Aguilera,A., Ueyama,N., Wu,J.-J.,
            Eyre,D.R., Juricic,L., Chandrasekaran,S., Li,M., Nah,H.-D.,
            Upholt,W.B. and Tanzer,M.L.
  TITLE     Cloning and developmental expression of the alpha-3 chain of
            chicken type IX collagen
  JOURNAL   J. Biol. Chem. 267, 10070-10076 (1992)
  STANDARD  full automatic
FEATURES             Location/Qualifiers
     mRNA            1..2416
                     /note="clones pRLT-1 and pCCOL9A3a-e"
                     /product="alpha-3 type IX collagen"
     5'UTR           1..22
                     /note="clones pRLT-1 and pCCOL9A3a-e"
     sig_peptide     23..85
                     /note="clones pRLT-1 and pCCOL9A3a-e"
                     /codon_start=1
     CDS             23..2050
                     /note="clones pRLT-1 and pCCOL9A3a-e"
                     /product="alpha-3 type IX collagen"
                     /codon_start=1
                     /translation="MTVFPTLGLLFLCQLLATTSAQRVGPQGPPGPRGPPGPSGKDGI
                     DGEPGPSGLPGPPGPKGAPGKPGAAGEAGLPGLPGVDGLTGTDGPPGPNGPPGDRGAL
                     GPAGPPGPAGKGLPGPPGPPGPSGLPGGNGFRGPPGPSGLPGFPGPPGPPGPPGLAGI
                     IPEGGGDLQCPALCPPGPPGPPGMPGFKGHTGHKGGPGEIGKEGEKGSPGPPGPPGIP
                     GSVGLQGPRGLRGLPGPMGPAGDRGDIGFRGPPGIPGPPGRAGDQGNKGPQGFRGPKG
                     DTGRPGPKGNPGARGLIGEPGIPGKDGRDGAPGLDGEKGDAARMGVPGEKGPNGLPGL
                     PGRAGIKGSKGEPGSPGEMGEAGPSGEPGIPGDVGIPGDRGLPGPRGATGPVGLPGPI
                     GAPGVRGFQGPKGSSGEPGLPGPTGIRGESGDRGPAGVIGAKGSQGIAGADGLPGDKG
                     ELGPFGPPGQKGEPGKRGELGPKGAQGPNGTAGAPGIPGHPGPMGHQGEQGVPGITGK
                     PGPPGKEASEQHIRELCGEMINDQIAQLAANLRKPLSPGMTGRPGPAGPPGPPGATGS
                     VGHPGARGPPGYRGPTGELGDPGPRGDTGEKGDKGPAGQGIDGPDGDQGPQGLPGVPG
                     ISKNGRDGAQGEPGLPGDPGTPGAVGAQGTPGICDTSACMGAVGASTSKKS"
     mat_peptide     86..2047
                     /note="clones pRLT-1 and pCCOL9A3a-e"
                     /product="alpha-3 type IX collagen"
                     /codon_start=1
     variation       1003
                     /note="'in clone CCOL9A3a'"
                     /note="replace 'A' in variation"
     variation       1018
                     /note="'in clones RLT1 and CCOL9A3b'"
                     /note="replace 'T' in variation"
     variation       1080
                     /note="'in clone CCOL9A3a'"
                     /note="replace 'G' in variation"
     variation       1120
                     /note="'in clone CCOL9A3c'"
                     /note="replace 'T' in variation"
     variation       1178
                     /note="'in clone CCOL9A3c'"
                     /note="replace 'C' in variation"
     variation       1665
                     /note="'in clone CCOL9A3b'"
                     /note="replace 'G' in variation"
     3'UTR           2051..2416
                     /note="clones pRLT-1 and pCCOL9A3a-e"
BASE COUNT      587 a    621 c    732 g    476 t
ORIGIN
        1 ggagagacag agcctgggca cgatgactgt attccccact cttgggctac tcttcctttg
       61 tcagctatta gccacaacat cagctcagag agtaggacca caaggccctc ctggaccacg
      121 aggaccccct ggaccatctg gcaaggacgg catagatggt gagccgggcc cttctggttt
      181 gccaggccca ccaggaccaa agggtgcacc aggaaagcct ggagcagctg gtgaagctgg
      241 gctgcctggc cttcctggag tagacggttt aacaggaact gatggccctc ctggcccaaa
      301 tgggcctcca ggagaccgtg gtgcattggg acctgctggg ccacctggac cagctggtaa
      361 aggactacca ggacccccag ggcctccagg acccagtgga cttccaggtg gaaatggatt
      421 tcggggtcct cctgggcctt ctggtctgcc aggattccca gggcctcctg gaccacccgg
      481 acctcccggt ctcgcaggca tcattcccga aggcggtggg gacctccagt gcccagctct
      541 gtgcccacca ggtcctcctg gtcctccagg aatgccaggc ttcaagggac acactggtca
      601 caaaggagga cctggtgaaa taggcaaaga aggagagaag ggcagccctg gccctccggg
      661 tcctccaggc atccctggca gcgttggcct gcagggccca agaggactaa gaggtctccc
      721 tggtccaatg ggtccagctg gtgacagagg tgacatcggt ttcagagggc cgcctggaat
      781 cccaggacct ccggggagag ctggagacca aggaaacaaa ggacctcaag gattcagagg
      841 gcccaaaggc gatactggta gacccggacc aaaaggaaac ccaggggctc gtgggctcat
      901 aggagaacct ggcatacctg gcaaggatgg acgggatgga gctcctggac tcgatggtga
      961 gaagggtgat gcagctcgga tgggtgttcc tggagagaag gggccaaacg gacttcccgg
     1021 actgcctgga agagcaggga ttaaaggctc taaaggtgaa ccaggcagtc ctggagagat
     1081 gggagaggcg ggtccctctg gagagccagg tatccccggc gatgtcggta ttcctggtga
     1141 tagaggtctg ccgggaccca gaggagcaac tggtcccgtt ggtctcccag gccccattgg
     1201 agctcccggt gtccgaggct tccagggtcc caaaggttcc agtggggaac ctggccttcc
     1261 tggtccgact ggaattcgtg gagagtctgg tgacaggggt cctgctggtg ttattggtgc
     1321 caaaggtagc cagggcattg ctggagcaga cggtctccca ggtgacaaag gagaactggg
     1381 tccctttggt cctcctggcc aaaaaggaga gccaggaaaa agaggagaac tgggtccaaa
     1441 aggtgctcaa ggacccaatg ggacagctgg agctccaggg atcccaggac acccagggcc
     1501 catgggccat cagggggagc agggcgttcc tggcatcaca ggcaaaccgg ggcctcctgg
     1561 caaagaggcc agcgagcaac atataagaga actctgtggg gaaatgataa acgatcaaat
     1621 tgcacagtta gctgctaatc taagaaagcc cttatctcct gggatgacgg ggcgccctgg
     1681 tcctgctggt ccaccgggtc ctccaggagc gacgggaagc gttggacatc ctggtgctcg
     1741 tggtccaccc ggatacagag ggccaacagg agagcttggt gatcctggtc ccagaggtga
     1801 cactggtgaa aagggagata aaggaccggc tggacaagga attgatggac ctgatggtga
     1861 tcaaggacct caaggacttc ctggtgtacc tggaattagt aaaaatggtc gggatggtgc
     1921 tcagggtgaa cccggtcttc caggggatcc cggtactcct ggtgctgttg gggctcaggg
     1981 aactccaggc atatgtgaca catcagcttg catgggagct gtcggagcat cgacttccaa
     2041 aaagtcataa aacagtacaa gaagtggaga agtgactgaa tatttaaata aacagtgcat
     2101 tgtaagaaaa cagacaatct tcctagtgat aaatggacag atgttccttc tattataagt
     2161 ggagactttg acacaataat tcagttctat gaaaaagaaa gcatcagatg aaaaccataa
     2221 ctaaagatgc tttatgagca ttttttcctc ctcccccaat tattttccag aatttttact
     2281 gctaaatcac ctcaccttcc ctgcctcccc gtgtcgaaga gacctgcaag aggaagtgtt
     2341 cctttttacc atcatctccc aggctgtact agcgcagctt tttgtataaa tgtttgatcc
     2401 tttgtcaatt gaattc
//