From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Rabbit (clones pBSL10c7g and pBSL10c7f) LINE1 (L1Oc7) repeat unit,
Date: 22 Jul 92 10:03:33 GMT
Distribution: bionet
Checksum: 52358     5

LOCUS       RABLINE1C    2136 bp ds-DNA             MAM       22-JUL-1992
DEFINITION  Rabbit (clones pBSL10c7g and pBSL10c7f) LINE1 (L1Oc7) repeat unit,
            5' end.
ACCESSION   M93323
KEYWORDS    LINE1 (L10c7) repetitive sequence.
SOURCE      Oryctolagus cuniculus (strain New Zealand white) (library: rabbit
            genomic DNA in lambda Charon 4A) liver DNA.
  ORGANISM  Oryctolagus cuniculus
            Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
            Eutheria; Lagomorpha; Leporidae.
REFERENCE   1  (bases 1 to 2136)
  AUTHORS   Ayres,J.A., Pasqualone,D.M., Cabell,C.H., Miller,W. and
            Hardison,R.C.
  TITLE     The 5' end of LINE1 repeats in rabbit DNA define subfamilies and
            reveal a short sequence conserved in rabbits and humans
  JOURNAL   Unpublished (1992)
  STANDARD  full staff_review
REFERENCE   2  (bases 1 to 2136)
  AUTHORS   Price,D.K.
  TITLE     Subfamilies defined by the 5' ends of long interspersed repetitive
            elements in rabbit DNA, and regulatory elements upstream of the
            rabbit epsilon-globin gene
  JOURNAL   Unpublished (1992)
  STANDARD  full staff_review
FEATURES             Location/Qualifiers
     repeat_unit     51..2136
                     /function="retrotransposon"
                     /rpt_family="LINE1"
                     /rpt_type=other
                     /standard_name="L1Oc7"
                     /note="putative"
                     /citation=[1]
                     /citation=[2]
     repeat_region   1071..2027
                     /note="ORF1 in L1Oc7. Contains frame-shift mutations, as
                     do most 'open' reading frames in L1 repeats, hence we
                     think it is nonfunctional."
                     /note="putative"
                     /citation=[1]
                     /citation=[2]
     misc_feature    2077..>2136
                     /function="like pol of retroviruses (reverse
                     transcriptase, etc.)"
                     /note="ORF2 5'end (total length ~1273 bp)"
                     /note="putative"
                     /citation=[1]
                     /citation=[2]
BASE COUNT      808 a    431 c    495 g    402 t
ORIGIN
        1 gagtcatctc atgctttcag gcagccgaga gctcgaaagg aagttgagca cgttttggcg
       61 cggacaagat ggccgaatag ggaggggtgg accgatagtc cgggaatatt tagtttaata
      121 aaaggggagt taccgtagct gcagaaagaa gaacccaaaa aaaagaattg caggggaaac
      181 ccttctggat ggagcagcct cagaacagag gacctactgg agacaaggtc cccaccgctc
      241 ccaagccaag tcacggaccg agtggatgaa ccccaggtct ggaggcctag gtgctccaag
      301 gggagtgcat gccacacgac aacagccggg attcttggga tgctctgtgc tctgagttta
      361 tcatcggtgc tggaagggga ggtgagctca ataacccgag acattggtgg gaaacggggg
      421 tagaatctag aggggggccg gaaagtgcag aaaactcact accggaaaga aggaaaaaaa
      481 aagcttcggg gtttctcttc cccctaacct tgcaaaggtt acaaggctgc aaggcttgaa
      541 gaattcccaa gagacaaaga gcaggcctcc tctctgcatt tgcatatcaa tgggggagag
      601 ctaaggaact gagtcactac aattcagtag cctaggcaac ccagtgggag tccagaggag
      661 ccaaagactg gaagctaaat accatcaatt ctgcacagcc ctgccctgcg gtgttaccta
      721 ccccctgaat aaataaaata aataaataaa taaaaagaga gagatttacc atgcataacc
      781 tgagggtgtc acctttgcac acccttaacc aggaagaacc aggcagagct tcaggccgca
      841 cccatctcaa gcctccaaag gcctcctcca acagcaggca ctccacttaa cacggacaca
      901 gtataaaata aaaaaaaaaa agaaaagaaa aaaaccacag tgacacaaga agaattaact
      961 atccgagtaa caaccagaat agagggagca agatcaacga tgacactatg atgcctccaa
     1021 ataagcaaaa caccccaagc caagagtatg aagatgatga gatagaagaa atgcaagata
     1081 cggatttcaa aaaatttatg ataagaacat ttagaagttt tcaaaagcaa atccttgaac
     1141 tacagaaatc cgtaatggac aagattgaaa atctctctcg tgaaaacgaa attttaagga
     1201 agagtcaaaa tgaaactcag aaactagtag aacaggaaag tgttatagtg aagagaaatc
     1261 aaaatgaaat gaagagctac atacatcaaa tgacaaacac attagaaagc cttaaaaaca
     1321 gaatgggtga agcagaagag agaatatcgg acttagaaga tagagcacag gaaaacatac
     1381 agtcaaacca aagaaaagaa gaggaaatta gaaacctaaa ccatattgtt gggaatctat
     1441 aggatactat taaaaaaaaa caacattcga gttctaggag ttcctgaagg catggagaga
     1501 gagaaaggat tggaaggcct ttttagtgag atactagcag agacactttc caggtttgga
     1561 gaaggacaga gatatcctag tacaggaagc tcatagaacc cctaataaac atgaccaaaa
     1621 gagatcctca ccacgacacg tggtaattaa acttaccaca gtgaaacata aagaaaagat
     1681 cctaaaatgt gcaagagaga aacgtcagat tactctcaga ggatctccaa tcagactcac
     1741 agcttcgaac ttctcatcag aaaccctaca agctaggagg gaatggcgag actagcacag
     1801 gtgcgtaaga gagaaaaaat tgccaggccc agaatttata tatcctgcca agctctcatt
     1861 tgtgaatgaa tgagtaataa agacctttca tagcaaacag aaattgaaag actttgtggc
     1921 cactcggtcc ggccctgcaa aagatactta aagatgtgct acactcagaa acacagaaac
     1981 acggccatca atatgaaaga agggaaagga agaacaccta ccagtaaaag agcgatggga
     2041 agctcaaagc atatactaca aaatatctct gggaaaatgg cagggcaaag tcactacgta
     2101 tcaatagtca cattgaagat taatggtctg aattcg
//