From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: C. elegans gene for glyceraldehyde-3-phosphate dehydrogenase
Date: 15 Sep 92 10:02:30 GMT
Distribution: bionet
Checksum: 17840     7

LOCUS       CELGAPDH     2142 bp ds-DNA             INV       15-SEP-1992
DEFINITION  C. elegans gene for glyceraldehyde-3-phosphate dehydrogenase
            (E.C.1.2.1.12).
ACCESSION   X04818
KEYWORDS    dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase;
            unidentified reading frame.
SOURCE      nematode (Caenorhabditis elegans).
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
            Rhabditina; Rhabditoidea; Rhabditidae.
REFERENCE   1  (bases 1 to 2142)
  AUTHORS   Hecht,R.M.
  JOURNAL   Unpublished (1987) Submitted to the EMBL data library.
  STANDARD  simple automatic
REFERENCE   2  (bases 1 to 2142)
  AUTHORS   Yarbrough,P.O., Hayden,M.A., Dunn,L.A., Vermersch,P.S., Klass,M.R.
            and Hecht,R.M.
  TITLE     The glyceraldehyde-3-phosphate dehydrogenase gene family in the
            nematode, Caenorhabditis elegans: isolation and characterization of
            one of the genes
  JOURNAL   Biochim. Biophys. Acta 908, 21-33 (1987)
  STANDARD  simple automatic
COMMENT
            [2]  enum. -383 to 1760, no zero.
            [1]  enum. 1 to 2142.
            The original publication of this sequence in Biochim. Biophys. Acta
            908, 21-33 (1987) contained the following error:  base pairs
            1737-1741 were erroneously printed as tggtt instead of the correct
            tgtt.
FEATURES             Location/Qualifiers
     exon            <384..906
                     /number=1
                     /note="glyceraldehyde-3-phosphate dehydrogenase (AA 1-174)
                     (906 is 1st base in codon)"
     CDS             join(384..906,959..1391,1440..1509)
                     /note="glyceraldehyde-3-phosphate dehydrogenase (AA 1-174)
                     (906 is 1st base in codon)"
                     /codon_start=1
                     /translation="MSKANVGINGFGRIGRLVLRAAVEKDTVQVVAVNDPFITIDYMV
                     YLFKYDSTHGQFKGTVTYDGDFLIVQKDGKSSHKIKVFNSKDPAAIAWGSVKADFVVE
                     STGVFTTKEKASAHLQGGAKKVIISAPSADAPMYVVGVNHEKYDASNDHVVSNASCTT
                     NCLAPLAKVINDNFGIIEGLMTTVHAVTATQKTVDGPSGKLWRDGRGAGQNIIPASTG
                     AAKAVGKVIPELNGKLTGMAFRVPTPDVSVVDLTVRLEKPASMDDIKKVVKAAADGPM
                     KGILAYTEDQVVSTDFVSDPHSSIFDAGACISLNPNFVKLVSWYDNEYGYSNRVVDLI
                     GYIATRG"
     CDS             join(1986..2053,2101..>2142)
                     /note="unidentified reading frame (AA 1-23) (2053 is 2nd
                     base in codon)"
                     /codon_start=1
                     /translation="MNRVLARFCSSIPSCSQRFTEEELQAIIELNEDPRNS"
                     /partial
     intron          907..958
                     /number=1
     exon            959..1391
                     /number=2
                     /note="glyceraldehyde-3-phosphate dehydrogenase (AA
                     175-319) (959 is 2nd base in codon) (1391 is 2nd base in
                     codon)"
     intron          1392..1439
                     /number=2
     exon            1440..>1721
                     /number=3
                     /note="glyceraldehyde-3-phosphate dehydrogenase (AA
                     320-341) (1440 is 3rd base in codon)"
     polyA_signal    1717..1721
     CAAT_signal     1866..1870
     TATA_signal     1940..1944
     exon            (1945.1986)..2053
                     /number=1
     intron          2054..2100
                     /number=1
     exon            2101..>2142
                     /number=2
                     /note="unidentified reading frame (AA 24-37) (2101 is 3rd
                     base in codon) (2143 is 2nd base in codon)"
     exon            2101..>2142
                     /note="unidentified reading frame (AA 24-37) (2101 is 3rd
                     base in codon) (2143 is 2nd base in codon)"
BASE COUNT      573 a    464 c    424 g    681 t
ORIGIN
        1 ttcatttttg aagaaaatta attgattttt tcaccgtaat gtttcaattt taaagggatg
       61 accaaaatca aacacctcag gtctcgcgac gaatttgaca aatatttttt gcgctttgct
      121 ggcgcgcgcg agcggcaatt tttcaattat tccaatcgcc cgcgcaagtt tctgctgttt
      181 ttcaccaatc tggatttctt tctcatcatt tattctcatt taagtttcga tgcggttgat
      241 tttatttcac tgttgatttt gcttttcttt cttttcttta atctgaattt tcgccatttt
      301 tattcagatt tgttccttct taactattgc ttcttgtgaa tcttccgtca aaatttcatt
      361 caagttttct tacagactca aaaatgtcga aggccaacgt cggaatcaac ggtttcggaa
      421 gaatcggacg tctcgtgctc cgcgcggctg tcgaaaagga cacggttcaa gtggtcgccg
      481 tcaacgatcc gtttatcaca atcgactaca tggtctacct tttcaagtat gactcgaccc
      541 acggtcaatt caaaggaact gttacctacg atggagactt tctgattgtc cagaaagatg
      601 gcaaatcatc gcacaagatc aaggtcttca acagcaagga tccagctgcc atcgcatggg
      661 gatcagtcaa agccgatttc gttgtcgagt ctactggagt tttcacgaca aaggaaaagg
      721 cttctgctca tcttcaagga ggagccaaga aggtcatcat ctctgctcca tctgctgatg
      781 ctccaatgta cgtggttgga gtaaaccatg agaagtacga cgcttcgaat gatcacgttg
      841 tttctaacgc atcgtgcacc accaactgtc tggcaccact ggcgaaggtt atcaatgata
      901 acttcggtat gatcatcatc aaatcaattt gtttttttct aatttatttt attttcaggt
      961 atcatcgaag gactcatgac gacagtgcac gctgtaaccg caacccagaa gacagtggat
     1021 ggaccatccg gaaagctgtg gagagatgga cgcggtgctg gacaaaacat cattccagct
     1081 tccactggag ccgccaaggc tgtgggaaaa gtcattccgg agctgaacgg aaaactcact
     1141 ggaatggctt tccgtgtccc tacaccagat gtttccgtcg ttgatctgac cgttcgcctc
     1201 gagaagccag cttcgatgga cgacatcaag aaggtagtca aggccgctgc cgatggacca
     1261 atgaagggaa tcctcgccta cactgaagat caagttgtgt cgactgattt cgtgtccgac
     1321 cctcactcgt ccattttcga tgctggagca tgcatttcgc tcaacccgaa cttcgtcaag
     1381 ctcgtctctt ggtaaccact gaatgtttaa aaaatctatt ctaaatttat tctttgcagg
     1441 tacgacaatg aatatggata ctcgaaccgt gttgtcgacc tcatcggata catcgccacc
     1501 cgtggataat tctatcagga tcttttatgt acaatccatg tatttcatag ccatttttta
     1561 ttacagtcat cattgaatga acctattttt ctggtgaaat ctagtacttt tgtcatgatt
     1621 tcagaaaaga gcttgaagtg acctctaaag tcaatgtcta ttgaaattta attgaaaagg
     1681 tacggaggcg gaagccatac tttccgtact tcacatataa aaaatgatgt ctgtggtgtt
     1741 ggtgagatta gaaataggtc tactagaata caaactacaa ttttcctacc aaccaaaagt
     1801 gcggaagaga aaaacttcgg ccgtgtagtc ctctcggagt ttttcctttt cctgcctttt
     1861 gtatacaaat ttgtatgtat ttgcttcgat tttgtttctt gtttactatt ttatcaactt
     1921 tttcaagcat tatatttttt ataattttta aaagcatttc cagaattggc gattttcata
     1981 tcttcatgaa tcgagtactc gcacgttttt gctcttcgat tccttcttgc tctcaacggt
     2041 ttacggaaga agagtaagtt tttaaaagtt tttgaaaccc acgaagcaat actttttcag
     2101 gttacaagca ataatcgaac tgaacgaaga tccgaggaat tc
//