From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Rhesus macaque polyoma virus minor structural protein VP2 (5'end)
Date: 31 Dec 92 01:40:52 GMT
Distribution: bionet
Checksum: 16011 5

LOCUS       SV4STA3      1121 bp ds-DNA             VRL       17-DEC-1992
DEFINITION  Rhesus macaque polyoma virus minor structural protein VP2 (5'end)
            small t antigen (5' end) and agnoprotein (complete cds) genes.
ACCESSION   M99357
KEYWORDS    agnoprotein; enhancer; minor structural protein VP2;
            small t-antigen.
SOURCE      Rhesus macaque polyomavirus (strain Kid246) DNA.
  ORGANISM  Rhesus macaque polyomavirus
            Viridae; ds-DNA nonenveloped viruses; Papovaviridae;
            Polyomaviruses.
REFERENCE   1  (sites)
  AUTHORS   van Heuverswyn,H. and Fiers,W.
  TITLE     Nucleotide sequence of the Hind-C fragment of Simian Virus 40 DNA:
            comparison of the 5'-untranslated region of wild-type virus and of
            some deletion mutants
  JOURNAL   Eur. J. Biochem. 100, 51-60 (1979)
  STANDARD  full automatic
REFERENCE   2  (bases 1 to 1121)
  AUTHORS   Ilyinskii,P.O., Daniel,M.D., Horvath,C. and Desrosiers,R.C.
  TITLE     Genetic analysis of simian virus 40 from brains and kidneys of
            macaque monkeys
  JOURNAL   J. Virol. 66, 6353-6360 (1992)
  STANDARD  full automatic
FEATURES             Location/Qualifiers
     enhancer        complement(439..510)
                     /note="72-bp repeat"
     variation       replace(complement(510^511),
                     "ggtgtggaaagtccccaggctccccagcaggcagaagtatgcaaagcatgcatctca
                     attagtcagcaacca")
                     /citation=[1]
                     /partial
                     /note="2nd 72bp repeat (exists in SV40 strain 776,
                     nucleotides 179-250)"
     variation       replace(991,"t")
                     /citation=[1]
                     /note="nucleotide 732 in SV40 strain 776"
     variation       replace(1028,"g")
                     /citation=[1]
                     /note="nucleotide 768 in SV40 strain 776"
     CDS             complement(1..252)
                     /partial
                     /note="partial"
                     /product="small t antigen"
                     /codon_start=1
                     /translation="MDKVLNREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPD
                     KGGDEEKMKKMNTLYKKMEDGVKYAHQPDFGGFWDATEVF"
     CDS             595..783
                     /product="agnoprotein"
                     /codon_start=1
                     /translation="MVLRRLSRQASVKVRRSWTESKKTAQRLFVFVLELLLQFCEGED
                     TVDGKRKKPERLTEKPES"
     CDS             822..1121
                     /partial
                     /note="partial"
                     /product="minor structural protein VP2"
                     /codon_start=1
                     /translation="MGAALTLLGDLIATVSEAAAATGFSVAEIAAGEAAAAIEVQLAS
                     VATVEGLTTSEAIAAIGLTPQAYAVISGAPAAIAGFAALLQTVTGVSAVAQVGYRF"
BASE COUNT      268 a    255 c    265 g    333 t
ORIGIN      
        1 aaatacctca gttgcatccc agaagcctcc aaagtcaggt tgatgagcat attttactcc
       61 atcttccatt ttcttgtaca gagtattcat tttcttcatt ttttcttcat ctcctccttt
      121 atcaggatga aactccttgc atttttttaa atatgccttt ctcatcagag gaatattccc
      181 ccaggcactc ctttcaagac ctagaaggtc cattagctgc aaagattcct ctctgtttaa
      241 aactttatcc atctttgcaa agctttttgc aaaagcctag gcctccaaaa aagcctcctc
      301 actacttctg gaatagctca gaggccgagg cggcctcggc ctctgcataa ataaaaaaaa
      361 ttagtcagcc atggggcgga gaatgggcgg aactgggcgg agttaggggc gggatgggcg
      421 gagttagggg cgggactatg gttgctgact aattgagatg catgctttgc atacttctgc
      481 ctgctgggga gcctggggac tttccacacc ctaactgaca cacattccac agctggttct
      541 ttccgcctca gaaggtacct aaccaagttc ctctttcaga ggttatttca ggccatggtg
      601 ctgcgccggc tgtcacgcca ggcctccgtt aaggttcgta ggtcatggac tgaaagtaaa
      661 aaaacagctc aacgcctttt tgtgtttgtt ttagagcttt tgctgcaatt ttgtgaaggg
      721 gaagatactg ttgacgggaa acgcaaaaaa ccagaaaggt taactgaaaa accagaaagt
      781 taactggtaa gtttagtctt tttgtctttt atttcaggtc catgggtgct gctttaacac
      841 tgttggggga cctaattgct actgtgtctg aagctgctgc tgctactgga ttttcagtag
      901 ctgaaattgc tgctggagag gccgctgctg caattgaagt gcaacttgca tctgttgcta
      961 ctgttgaagg cctaacaacc tctgaggcaa tagctgctat aggcctcact ccacaggcct
     1021 atgctgtcat atctggggct cctgctgcta tagctggatt tgcagcttta ctgcaaactg
     1081 tgactggtgt gagcgctgtt gctcaagtgg ggtatagatt t
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