From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Escherichia coli recombinase (fimB) gene, 5' end.
Date: 31 Dec 92 01:34:22 GMT
Distribution: bionet
Checksum: 53203 4

LOCUS       ECOFIMBPR    1359 bp ds-DNA             BCT       17-DEC-1992
DEFINITION  Escherichia coli recombinase (fimB) gene, 5' end.
ACCESSION   L07756
KEYWORDS    fimB gene; promoter; recombinase.
SOURCE      Escherichia coli (strain J96) DNA.
  ORGANISM  Escherichia coli
            Prokaryotae; Gram-negative facultatively anaerobic rods;
            Enterobacteriaceae.
REFERENCE   1  (bases 1 to 1359)
  AUTHORS   Schwan,W.R., Seifert,H.S. and Duncan,J.L.
  TITLE     Analysis of the fimB promoter region involved in type 1 pilus phase
            variation
  JOURNAL   Unpublished (1993)
  STANDARD  full automatic
FEATURES             Location/Qualifiers
     mRNA            one-of(859..1359,860..1359)
                     /gene="fimB"
                     /partial
                     /note="from promoter 2; putative"
     mRNA            one-of(1000..1359,1001..1359)
                     /gene="fimB"
                     /evidence="EXPERIMENTAL"
                     /partial
                     /note="from promoter 1"
     mRNA            (208.232)..>1359
                     /gene="fimB"
                     /evidence="EXPERIMENTAL"
                     /note="from promoter 3"
     repeat_unit     275..282
                     /rpt_type=direct
                     /evidence="EXPERIMENTAL"
                     /label=repeat1
     repeat_unit     357..363
                     /rpt_type=direct
                     /evidence="EXPERIMENTAL"
                     /label=repeat2
     repeat_unit     497..504
                     /rpt_type=direct
                     /evidence="EXPERIMENTAL"
                     /label=repeat1
     repeat_unit     594..600
                     /rpt_type=direct
                     /evidence="EXPERIMENTAL"
                     /label=repeat2
     CDS             1149..>1359
                     /gene="fimB"
                     /note="putative"
                     /product="recombinase"
                     /codon_start=1
                     /translation="MKNKADNKKRNFVTHSEIESLLKAANTGPHAGRNYCLTLLCFIH
                     GFRASEICRLRISDIDLKAKCIYIHR"
BASE COUNT      395 a    266 c    316 g    382 t
ORIGIN      
        1 gacgctctcc cttatgcgac tcctgcatta ggaagcagcc cagtagtagg ttgaggccgt
       61 tgagcaccgc cgccgcaagg aatggtgcat gcaaggagat ggcgccaaca gtcccccggc
      121 cacgggcctg ccaccatacc cacgccgaaa caagcgctca tgagcccgaa gtggcgagcc
      181 cgatcttccc catcggtgat gtcggcgata taggcgccag caaccgcacc tgtggcgccg
      241 gtgatgccgg ccacgatgcg tccgcgtaga ggatcttagt ttaactattg ttttataaat
      301 aatttgttag agtctaaaca aggggagctt tgcaagctaa ctcagtgagc ttggtgaaaa
      361 tcagtgttta cccgccatca ggctgagcat aattctcatc atgaaatatg tttcctgttt
      421 gtggcttgta actggtcacc ttctgaagcc gatctggaga ggcttgtgga tgttggtgtt
      481 tcaggatgat gtttcactta gtttgtttgc cgtatcgccc ggcgaatggc tgtgattgag
      541 gaaggtttaa gtcgtagtga ccaaagctat atttaccaac gaatgtagat gaaaaaatca
      601 tctcgtgcgt tcccccatat ctccaggata aaaaggaatg taacaatctc atgcgtaagc
      661 tgacgaatca gcaggaataa tcgctaggga cctaagaatt agcatgataa tagccactaa
      721 gaaattactg cgctccatga aatagccatt ttgtggcaaa tggagttgac taataatgtc
      781 atatgtgaga cggctagttg aacgaatatt aaattttgct gaatttttta tgttgatttt
      841 acttgttaca gaacatatca catgatatat agataagatt agttgcatta atgatgaggg
      901 ttattattag attcgtatcc gattgataaa tatataaagg tacatagcat gcaagagcat
      961 ggcgtttgta tggcaacgtt ataataatta acagttgcta ctccatttaa gttcactcag
     1021 aagaactggt ccacttacgt tagttattaa gcaaacgttc gcttttataa acataatcag
     1081 gataaaaatg ttggattatt gctaacccag cacagctagt gcgcgtctgt aattataagg
     1141 gaaaaacgat gaagaataag gctgataaca aaaaaaggaa cttcgtgacc catagtgaaa
     1201 tcgaatcact ccttaaagca gcaaataccg ggcctcatgc aggacgtaat tattgtctga
     1261 ctttgctttg ttttattcat ggtttccggg cgagtgaaat ttgtcgattg aggatttcgg
     1321 atattgatct taaggcaaag tgtatatata tccatcgat
//