From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Bovine immunodeficiency-like virus proviral gag and vif polyprotein
Date: 5 Nov 92 23:05:20 GMT
Distribution: bionet
Checksum: 47134 16

LOCUS       BIMGVPP      8388 bp ss-RNA             VRL       14-OCT-1992
DEFINITION  Bovine immunodeficiency-like virus proviral gag and vif polyprotein
            genes, complete cds and rev-responsive element.
ACCESSION   L04974
KEYWORDS    gag polyprotein; rev-response element; vif polyprotein.
SOURCE      Bovine immunodeficiency-like virus (individual_isolate R-29)
            (library: lambda GEMII) RNA.
  ORGANISM  Bovine immunodeficiency-like virus
            Viridae; ss-RNA enveloped viruses; Positive strand RNA virus;
            Retroviridae; Lentivirinae.
REFERENCE   1  (bases 1 to 8388)
  AUTHORS   Nadin-Davis,S.A., Chang,S.C., Roth,J.A. and Carpenter,S.
  TITLE     Isolation and characterization of cDNAs encoding rev and tat of
            bovine immunodeficiency-like virus
  JOURNAL   Unpublished (1993)
  STANDARD  full automatic
FEATURES             Location/Qualifiers
     LTR             1..109
                     /note="1..109 = R region; 110..203 = U5 region"
                     /note="putative"
                     /citation=[1]
     terminator      129..132
     primer_bind     206..222
                     /standard_name="tRNA primer binding site"
                     /note="putative"
                     /citation=[1]
     protein_bind    6914..7225
                     /function="rev protein binds to the mRNA allowing for
                     structural protein expression"
                     /bound_moiety="rev protein"
                     /standard_name="rev-responsive element"
                     /note="putative"
                     /citation=[1]
     misc_signal     7878..7893
                     /function="initiation of plus strand DNA synthesis"
                     /standard_name="polypurine tract"
                     /note="putative"
                     /citation=[1]
     LTR             7896..8388
                     /note="7896..8279 = U3 region; 8280..8388 = R region"
                     /note="putative"
                     /citation=[1]
     enhancer        7933..7943
                     /standard_name="NF-kappaB consensus sequence"
                     /note="putative"
                     /citation=[1]
     enhancer        7987..7996
                     /standard_name="NF-kappaB enhancer sequence"
                     /note="putative"
                     /citation=[1]
     enhancer        8008..8014
                     /standard_name="core enhancer sequence"
                     /note="putative"
                     /citation=[1]
     enhancer        8105..8112
                     /standard_name="core enhancer sequence"
                     /note="putative"
                     /citation=[1]
     enhancer        8148..8155
                     /standard_name="core enhancer sequence"
                     /note="putative"
                     /citation=[1]
     CAAT_signal     8175..8178
     protein_bind    8202..8210
                     /bound_moiety="Sp1 factor"
                     /note="putative"
                     /citation=[1]
     protein_bind    8212..8221
                     /bound_moiety="Sp1 factor"
                     /note="putative"
                     /citation=[1]
     protein_bind    8233..8242
                     /bound_moiety="Sp1 factor"
                     /note="putative"
                     /citation=[1]
     TATA_signal     8253..8259
                     /note="putative"
     polyA_signal    8366..8371
     CDS             314..1744
                     /note="putative"
                     /citation=[1]
                     /gene="gag"
                     /product="gag polyprotein"
                     /codon_start=1
                     /translation="MKRRELEKKLRKVRVTLQQDKYYTIGNLQWAIRMINLMGIKCVC
                     DEECSAAEVALIITQFSALDLEDSPIKGKEEVAIKNTLKVFWSLLAGYKPESTETALG
                     YWEAFTYREREARTEKEGEIKSIYPSLTQNTQNKKQTSNQTNTQSLPAITTQDGTPRF
                     DPDLMKQLKIWSDATERNGIDLHAVNILGVITANLVQEEIKLLLNSTPKWRLDVQLIE
                     SKVREKENAHRTWKQHHPEAPKTDEIIGKGLSSAEQATLISVECRETFRQWVLQAAME
                     VAQAKHATPGPINIHQGPKEPYTDFINRLVAALEGMAAPETTKEYLLQHLSIDHANED
                     CQSILRPLGPNTPMEKKLEACRVVGSQKSKMQFLVAAMKEMGIQSPIPAVLPHTPEAY
                     ASQTSGPEDGRRCYGCGKTGHLKKNCKQQKCYHCGKPGHQARNCRSKNGKCSSAPYGQ
                     RSQPQNNFHQSNMSSVTPSAPPLILD"
     CDS             4599..5195
                     /note="putative"
                     /citation=[1]
                     /gene="vif"
                     /product="vif polyprotein"
                     /codon_start=1
                     /translation="MERTLQSVVGRRRGSSNRGRGKNSLISTPSYALHPPPRFRYPRW
                     EFVRQTEYSMTACVRKGKLVLTYQYAIWKRVWTIKTGFTDPSLFMTPAGTHTTEEIGH
                     LDLFWLRYCSCPHEMPPWLDFLRGALNLRISCRRALQASVLTSTPRHSLQRLAALQLC
                     TNACLCWYPLGRINDTTPLWLNFSSGKEPTIQQLSGHP"
     CDS             4727..4891
                     /note="ORF W"
                     /citation=[1]
                     /product="putative"
                     /codon_start=1
                     /translation="MGVREADRIQHDRVRKKREISPYLPVRDLEKSLDDKNRIYRSKS
                     VYDPSWNTHH"
     CDS             5087..5329
                     /note="ORF Y"
                     /citation=[1]
                     /product="putative"
                     /codon_start=1
                     /translation="MSLLVPVRTHQRHHPVVVELFVWEGTNDPTTEWPPLTRRNIHRL
                     WQYARTLGGDDNVATAQRKLWRKANWLAFLEHVQRT"
BASE COUNT     2710 a   1777 c   1967 g   1934 t
ORIGIN      
        1 ttcagctcgt gtagctcatt agctccgagc tccccaacct acagcctgag aggcactggc
       61 tcggttgggt agccagcctt tcgggtaata aaggcttggg cattcggcat ctacccgtgc
      121 ctcctgtctt gtcttactcg agcgaaccca caactccgtc ctgctgagct cacagctcgc
      181 ggggcggtga agaacaccca acagatggcg cccaacgtgg ggctcgagta agagagactc
      241 ggctcgagta aaagaaaacc cagctcgaac gagaagactc cggacaggtg agtagttgcg
      301 agttttcccc gggatgaaga gaagagagtt agaaaagaag cttcgtaagg ttagggtgac
      361 actccaacag gataaatatt atactatagg gaatcttcaa tgggccatta gaatgataaa
      421 tctaatgggg atcaaatgtg tgtgtgacga ggagtgctcg gcagcagagg tagcccttat
      481 cataacccaa ttttcagctt tagacttaga agattctcct atcaaaggta aggaggaagt
      541 ggccataaaa aatactctga aggttttctg gtccctgctg gcggggtaca aaccagagag
      601 tacagaaacg gccctaggat attgggaggc ctttacatat agagaaaggg aggccagaac
      661 tgaaaaggaa ggcgaaatta agagtattta cccttcccta acacagaaca cacagaataa
      721 gaagcagaca tcgaatcaaa caaacactca atcattacca gctatcacta ctcaagatgg
      781 tactcctagg tttgatcctg acctcatgaa gcagcttaag atctggtcag acgccactga
      841 aagaaatgga attgaccttc atgcagtgaa tatattaggg gtcattacag caaacctagt
      901 acaggaagaa attaaactcc tcttgaatag tacacccaag tggagattag atgtacaact
      961 tatagaatca aaagtaagag agaaagaaaa tgcccacaga acatggaaac agcatcatcc
     1021 agaagcccca aaaacagatg aaatcatcgg taaggggctt agttctgctg aacaagccac
     1081 cctgatctca gtagaatgca gagaaacttt cagacaatgg gtgctgcagg cagctatgga
     1141 ggtggcacag gcaaaacatg ctaccccagg tcccatcaac attcatcagg gacccaagga
     1201 gccgtacaca gactttataa atagattagt ggcagccctt gaaggtatgg cggctccaga
     1261 aaccacaaaa gaatacttac tccaacatct atctattgat catgccaatg aagactgcca
     1321 gtctattcta agacctttgg gacccaacac cccaatggag aaaaaattag aagcatgtag
     1381 ggtagtggga tctcaaaaat caaagatgca atttttggta gcagctatga aagaaatggg
     1441 gatccaatca ccaattccag cagtcttgcc tcacacacca gaagcatatg cctcccaaac
     1501 ctcagggccc gaggatggta ggagatgtta cggatgtgga aagacaggac atttgaagaa
     1561 gaattgtaaa cagcaaaaat gctaccattg tggcaaacct ggccaccaag caagaaactg
     1621 caggtcaaaa aacgggaagt gctcctctgc cccttatggg cagaggagcc aaccacagaa
     1681 caattttcac cagagcaaca tgagttctgt gaccccatct gcaccccctc ttatattaga
     1741 ttagacaaac agccttttat aaagatgttc atagggggaa gatgggtaaa agggttagta
     1801 gacattggag cagatgaggt agtgcttaag aacatacatt gggataggat aaaagggtat
     1861 ccagggacac caattaaaca aattggggta aatgaagtaa atgtagccaa aaggaagacc
     1921 cacgtagagt ggagatttaa ggataaaact gggataattg atgtcttgtt ctcagatact
     1981 cctgtaaacc tttttgggag atctcttcta cgtagcatag tgacttgctt caccctactt
     2041 gttcacacag aaaaaatcga acccctaccc gtcaaggtaa ggggaccagg gcctaaggta
     2101 ccccagtggc ccttgacaaa agaaaagtat caggctctta aggaaattgt gaaagatctt
     2161 ttagcagaag gaaaaatttc cgaagctgct tgggataacc catataatac cccagttttt
     2221 gttataaaga aaaagggaac ggaaagatgg aggatgctaa tggattttaa ggaattaaat
     2281 aagataacag tcaaaggaca agaattctct acaggcttac cttaccctcc aggaattaag
     2341 gaatgtgaac acttaactgc aatagatata aaagatgcct actttactat ccctttacat
     2401 gaggacttta gaccctttac agccttctct gtagtccctg taaatcgaga aggacctata
     2461 gagaggttcc agtggaatgt tctaccacaa ggatgggtat gtagccctgc catttatcag
     2521 actaccaccc agaagattat agaaaacatt aaaaagagtc acccagatgt catgttgtat
     2581 caatatatgg atgatttgtt aattgggtct aatagggatg atcataaaca aatagtgcag
     2641 gaaatcaggg ataagttagg atcatatggt ttcaagactc cagatgaaaa ggtccaggaa
     2701 gagagagtga aatggatcgg ttttgagctt acacccaaga aatggcgttt tcagcccagg
     2761 caactaaaga taaaaaaccc actcacagta aatgaattac agcaattagt aggtaattgt
     2821 gtttgggtac agccagaagt aaaaatccct ctacacccct taaccgatct actgagggat
     2881 aagaccaatc tccaagaaaa gatacaacta acaccagaag ccatcaagtg tgtagaagaa
     2941 ttcaatctaa aactaaaaga tccagaatgg aaagatagaa taagagaagg agcagaatta
     3001 gtcataaaaa tacagatggt tcctcggggc atagtatttg atctgttgca agatggaaat
     3061 cccatatggg gaggagtaaa aggactaaat tatgatcatt caaacaaaat aaaaaagata
     3121 cttagaacta tgaatgaact gaacagaaca gtggtaatta tgacaggaag agaagctagt
     3181 ttcctgcttc ctgggtcttc tgaagattgg gaagcggcac tccagaagga ggaaagtcta
     3241 acacaaatat tcccagtaaa gttttatagg cactcctgca gatggacctc catatgtggg
     3301 cctgtaagag aaaatctaac cacctactat actgacggag ggaagaaagg gaaaacagct
     3361 gcagcagtat attggtgtga aggaaggact aagtcaaagg tatttccagg aaccaatcaa
     3421 caggcgaaat tgaaggccat atgcatggct ctcttggatg gaccaccaaa aatgaatatc
     3481 ataacagata gtagatacgc ctatgaggga atgagagaag aaccagaaac gtgggccagg
     3541 gaaggaatct ggctggagat tgccaagata ttgcccttta agcagtacgt gggggtcgga
     3601 tgggtgcctg cacataaagg gataggagga aatacagagg cagatgaagg agttaagaaa
     3661 gccttagaac agatggcccc gtgtagccct cctgaggcca ttctattaaa accaggagaa
     3721 aaacaaaatc tggagacagg gatctacatg caggggctta gaccacaaag cttcctccca
     3781 agagcagact taccagtagc catcacagga accatggtag attcagagct acagctacag
     3841 ctacttaaca taggaactga gcaaataaga atccaaaaag atgaggtctt catgacctgt
     3901 ttcctagaaa atatcccctc agccactgaa gatcatgaga gatggcatac ctcaccagac
     3961 attttggtta ggcagttcca tctcccgagg agaatagcta aagagatagt agccagatgc
     4021 caagaatgta aaagaacaac cactagccca gtcagaggaa caaaccccag aggtcgattc
     4081 ttatggcaga tggacaatac tcactgaaat aaaacaatta tttgggtagc agtagagaca
     4141 aattcaggat tagtggaagc tcaggtgatc cctgaagaaa cagcactaca agtagctctc
     4201 tgcattttac agctaatcca gagatataca gttcttcact tacatagtga caacgggccg
     4261 tgctttactg cacacaggat agaaaatcta tgtaagtatc tggggatcac aaaaactacg
     4321 ggaataccct acaacccaca atcccaggga gttgtagaaa gagcccacag agatctaaaa
     4381 gacagattgg cagcttatca gggagattgt gaaaccgtag aagcagccct tagcctcgca
     4441 ttagtttctt taaataaaaa aagaggggga atagggggcc atacaccata tgaaatatac
     4501 ctagaatcag aacataccaa ataccaagac caactagaac aacaattttc aaaacaaaaa
     4561 attgaaaagt ggtgttacgt aaggaacaga agaaaggaat ggaaaggacc ctacaaagtg
     4621 ttgtgggacg gagacggggc agcagtaata gaggaagagg gaaaaacagc cttatatcca
     4681 caccgtcata tgcgcttcat ccccccccca gattcagata tccaagatgg gagttcgtga
     4741 ggcagacaga atacagcatg accgcgtgcg taagaaaagg gaaattagtc cttacttacc
     4801 agtacgcgat ctggaaaaga gtctggacga taaaaacagg atttacagat ccaagtctgt
     4861 ttatgacccc agctggaaca cacaccactg aagaaatagg tcacttagat ctcttttggc
     4921 ttaggtactg ttcatgtccg catgagatgc ccccgtggct agacttcctt agaggcgccc
     4981 tcaatctacg catttcctgt cgacgcgctc ttcaagcgtc agtgttgact agcaccccta
     5041 gacactccct ccaacgctta gctgcacttc agctgtgcac taacgcatgt ctctgttggt
     5101 acccgttagg acgcatcaac gacaccaccc cgttgtggtt gaacttttcg tctgggaagg
     5161 aaccaacgat ccaacaactg agtggccacc cctaactcgt cgtaacattc atagattgtg
     5221 gcaatatgcc cggaccttgg gtggcgatga taatgttgcc acagcccaaa gaaagctttg
     5281 gaggaaagcc aattggctgg cttttctgga acatgtgcaa aggacctagg cgggactgtc
     5341 cacattgttg ttgtcccata tgtagttggc attgtcagct ttgctttttg cagaaaaatc
     5401 taagaatcaa ctatggatca ggacctagac gcggaacgcg gggaaagggg aggaggatcc
     5461 ggagaactgc ttcaggagaa gatcaacgaa gggaggctga cagccagaga agctttacaa
     5521 acatggatca ataacggtga gatccaccct tgggtcctgg caggaatgct gtccatggga
     5581 gtaggaatgc tactaggagt atattgtcag ttaccagaca cactgatttg gatactaatg
     5641 tttcaattat gcctttattg gggtttgggt gaaacatcta gagaattaga caaggatagt
     5701 tgacagtggg tcagaagtgt atttataata gcaatattgg gaattctcac tatggcagga
     5761 actgctttgg ccgacgacga tcaaagtact ttaatcccca atatcacaaa aataataatt
     5821 gtcttgagac gcagcaactc ggaggatata ttggcagcca gagataccat aaattggtgg
     5881 ctctcagcta atcaggaaat acctccaaag tttgctttcc caataatatt aatatcttcc
     5941 cctctagcag gcataatagg atattatgtc acggaaaggc acttagagat cttcaaaaag
     6001 ggatgtcaaa tttgtgggag cctgagcctc atgtggggaa tgcttttgga agaaattggc
     6061 aggcgactcg cacgtaggga atggagtgtt agtagagtag tggttatcct cttaatcagc
     6121 ttcagttggg gaatgtatgt caatagggta aatgcctcag ggtcacatgt ggccatggtc
     6181 accagccctc cagggtaccg catagtgaat gataccagcc aggcaccttg gtattgcttc
     6241 tcctcggcac caatcccaac gtgtagttcc tctcagtggg gagacaaata ttttgaggag
     6301 aaaataaacg agacactggt caaacaggtg tatgaacagg ccgcgaaaca ctcgagagcc
     6361 acgtggattg aacctgatct attggaggaa gcagtctatg agctagctct gttatcagct
     6421 aatgatagtc gtcaggtggt ggtagaaaat ggtacagaca tatgtagttc acagaactcg
     6481 agcacaaaca aaggccaccc aatgacgctt ctaaagttga gaaggcaggt gtcagaaact
     6541 tggataggga attcctccct ccagttttgt gtccagtggc catatgtctt ggtaggtctt
     6601 aataatagtg atagtaatat tagctttaat tcgggaaatt ggatagcaac caattgtatg
     6661 cacccaatta cactaaataa aagtgcacaa gatctaggaa aaaattttcc gagactaaca
     6721 tttcttgacg gacaactgtc ccagttgaag aacacactgt gcggacataa cacaaactgt
     6781 ttgaaatttg gaaacaagtc cctcagtaca aattccctaa tactatgcca agacaacccc
     6841 atcggcaacg acacctttta tagcctaagt cattccttct caaaacaggc ctctgcccgg
     6901 tggattcttg taaaggtccc cagctatggg tttgtggtag taaatgacac agatacacca
     6961 ccatccctcc gcatccgaaa gcctcgagca gtcggactag caatattcct gcttgtgctg
     7021 gctatcatgg ccatcacatc ctccttggtg gcagctacaa cgctcgtgaa ccagcacacg
     7081 acggctaagg ttgtggagag ggttgtgcaa aatgtgtcat atattgctca aacccaggac
     7141 caattcaccc acctgttcag aaatatacac aacagattaa atgtcctaca ccatagagtt
     7201 tcatacctgg agtatgtaga ggaaatcaga caaaaacaag tattctttgg ttgcaaacct
     7261 catggaaggt attgccactt tgactttgga ccagaggaag ttggatggaa caatagttgg
     7321 aatagcaaaa cttggaatga tctacaagat gagtatgata agatagaaga aaagatatta
     7381 aaaattcgag tagactggct caatagctcc ctgagtgaca cacaggacac ctttggcctg
     7441 gagacctcta tttttgacca tttagtgcaa ttgtttgatt ggacttcttg gaaagactgg
     7501 ataaaaatca ttatagtaat cattgtactt tggcttctga taaagattct cctaggtatg
     7561 ttaagaagct gcgccaaggt cagccagaat taccaacatc tcccgacgga ggaggaggac
     7621 ggggacacag agccagaaag ctccccggcg agaggagacc cggcttctgg aagtctctac
     7681 gagaattggt tgaacaaaat aggagaaagc aagaacgacg cctatcgggt ctggacagaa
     7741 gaatacaaca gcttgaagat cttgttcgcc acatgtcgct gggatctcct gatccctcaa
     7801 ctccttcagc ttccgttctt tctgttaacc ctcctgctca aactcctttg ggacatcttc
     7861 cgccacgctc ctattttaaa cttaaaaggg tggactgtgg ggcagggtgg gacctcagga
     7921 caacagcagc ccccggactt cccatatgtg aattggactg gatccaggga acaaaataac
     7981 ccagaagggg gattagactc tggggcttgg tatgaaggcc tgagaggttc tcagtagatt
     8041 gtaagtcttc ggcgagactg catgtctgca cgtagacagg aaatgattat cttctcagct
     8101 gattgtggtt aggccgatta ctggaaacta gacaacctga ttcattagtg gttaagatta
     8161 tgcataactg ctcgcaatga tgtagctgct tacgcttgct tactccgccc tgaaacgcct
     8221 accttaacac gcaacacgcc cacctgtaag agtatataaa ccatatcttc actctgtact
     8281 tcagctcgtg tagctcatta gctccgagct ccccaaccta cagcctgaga ggcactggct
     8341 cggttgggta gccagccttt cgggtaataa aggcttgggc attcggca
//