From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: fimY=fimA expression regulation, fimZ=fimA expression regulation
Date: 27 Jan 93 05:59:08 GMT
Distribution: bionet
Checksum: 11487 5

LOCUS       S119123      2000 bp    DNA             BCT       19-JAN-1993
DEFINITION  fimY=fimA expression regulation, fimZ=fimA expression regulation
            [Salmonella typhimurium, Genomic, 2000 nt]
ACCESSION   S49798 M90677
KEYWORDS    .
SOURCE      Salmonella typhimurium
  ORGANISM  Salmonella typhimurium
            Unclassified.
REFERENCE   1  (bases 1 to 2000)
  AUTHORS   Swenson,D.L. and Clegg,S.
  TITLE     Identification of ancillary fim genes affecting fimA expression in
            Salmonella typhimurium.
  JOURNAL   J. Bacteriol. 174, 7697-7704 (1992)
  STANDARD  full automatic
COMMENT     This entry [NCBI gibbsq 119123] was created by the journal scanning
            component of NCBI/GenBank at the National Library of Medicine.
            This sequence comes from Fig. 4.
FEATURES             Location/Qualifiers
     CDS             23..745
                     /note="Description: fimA expression regulation;  For the
                     protein sequence (NCBI gibbsq 119124):  Method: conceptual
                     translation supplied by author.  This sequence comes from
                     Fig. 4."
                     /gene="fimY"
                     /codon_start=1
                     /translation="MRSVPRRERHRRLRNAKDCACRYHSPTPQIFDRLELLNQQLNYA
                     LPVGIISQAIITTDNYLGYSLSHYLFSGKRTAAFRSLDDISLWIEKGSLRQLIVDMEA
                     LPVSCIEALNQLRALSWQQSDIQIYLLVSDKTSAITQFIRMAGRFFVLSRRQNLASVR
                     EALLSASKPRLSESFSRTDWLMIETLAQGASLKEIARQQSVPYHRVVYRLKQLITLLN
                     LPHRQSFLRLIQQLNVTFHDIF"
     CDS             1349..1981
                     /note="Description: fimA expression regulation;  For the
                     protein sequence (NCBI gibbsq 119125):  Method: conceptual
                     translation supplied by author.  This sequence comes from
                     Fig. 4."
                     /gene="fimZ"
                     /codon_start=1
                     /translation="MKPASVIIMDEHPIVRMSIEVLLGKNSNIQVVLKTDDSRTAIEY
                     LRTYPVDLVILDIELPGTDGFTLLKRIKSIQEHTRILFLSSKSEAFYAGRAIRAGANG
                     FVSKRKDLNDIYNAVKMILSGYSFFPSETLNFISNTRTPKGGHHDMPLSNREVTVLRY
                     LANGMSNKEIAEQLLLSNKTISAHKANIFSKLGLHSIVELIDYAKSHELL"
BASE COUNT      589 a    456 c    358 g    597 t
ORIGIN      
        1 ttagagcaat ggaaaaagca ggatgcgcag cgtaccacgc agggaaagac accgccgttt
       61 aagaaatgct aaagactgcg cctgccgtta tcactctcca acgccgcaga tatttgatcg
      121 ccttgagtta ctgaaccaac agctcaatta tgccttgccg gttggtatca tttctcaggc
      181 aataattaca actgacaact acctcggcta ttcattgagt cactacttat tttccggaaa
      241 acgtaccgca gcattccgct cattagatga catttctttg tggattgaaa aggggtcgct
      301 cagacaactg attgtagata tggaggcgct acctgtctcc tgtattgagg cgcttaacca
      361 gctacgcgcg ctcagttggc aacaaagcga tatccagatt tacctgctgg tatcagataa
      421 aacctccgct ataacacagt ttatccgtat ggctgggcgt ttttttgtcc tgtcgcgacg
      481 acaaaatctg gcctcagtac gcgaagcctt gttatcagcc tccaaacctc gcttatcgga
      541 aagctttagc cgtactgact ggttgatgat tgaaacttta gcgcaaggcg cctctttaaa
      601 agaaatagca cgtcagcaaa gcgtacctta tcatcgtgta gtttaccggc ttaaacaact
      661 tatcaccctc cttaaccttc cccacaggca aagctttctt cggctgatcc agcagctaaa
      721 cgttactttc cacgacattt tttaacgaag taacgttttg gtgaataaga ttttttaaga
      781 aattacttat tttcacttcc attaaatgta aatatttcac ataaaattaa tatttacaac
      841 tcgtcctggt aagcgataaa aatttttttc ttacatcgtc ccctgttcct cctcgttttt
      901 cgaggtctcc agcgtcaaca tctttctgtt attacataac aaatactaaa caattagtct
      961 ttcatattat ttttatactt aaaaacaaca gtttaaacta ctcaatgtca actctaaaga
     1021 aaatagctcc accacgaaca aattttctat aacgtcacag aatatcctac ccgctatcca
     1081 taattcgcat ttcgcaagac ttttccgaga aatcagacca ggtataatcc atattgtttt
     1141 tacttaatca gaaatttctt ttttgttggt gcgaaatgga tattccacat atttattact
     1201 cttacgcaaa atagccagtc aacagggagg tctcattctt tattattgct ccactgtgtg
     1261 gtgtgtagat ctggctattt cacaatcttt aaggtgtctg acgcttatta taaaacgaag
     1321 gacgcataac agtctgaggc atacaacaat gaaacctgca tctgttatca ttatggacga
     1381 acaccctatt gtaagaatgt cgatcgaagt tttactcggt aaaaatagca atattcaggt
     1441 tgtcctgaaa acggatgata gccgaacagc gatagagtat ctgcgcactt atcctgttga
     1501 ccttgtcatt ctggatattg aattaccggg caccgacggc tttaccttac ttaaacgaat
     1561 caaatctatc caggaacata cccggatact ttttttatcg tcgaaatcag aggcttttta
     1621 tgccggaaga gcaataagag cgggcgcaaa cggatttgta agtaaacgca aagacctcaa
     1681 tgatatttat aatgcggtaa aaatgatttt atccggctat tcttttttcc catctgagac
     1741 gcttaatttc atcagtaata cccgtacccc caaaggcggg caccatgata tgccactatc
     1801 taaccgcgaa gttaccgtgc tgcgctatct ggccaatgga atgtctaaca aagaaattgc
     1861 cgagcaactt ttattgagta acaagactat cagcgcgcat aaggccaata tattttctaa
     1921 acttggcctt cactctatcg ttgagcttat cgattacgcc aaatcacacg aattattgta
     1981 aatgtactcc cggcgaatta
//