From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Rhesus macaque polyoma virus major structural protein VP1 (3' end)
Date: 31 Dec 92 01:40:59 GMT
Distribution: bionet
Checksum: 57839 5

LOCUS       SV4VP1B       840 bp ds-DNA             VRL       17-DEC-1992
DEFINITION  Rhesus macaque polyoma virus major structural protein VP1 (3' end)
            and large T antigen (3` end) genes.
ACCESSION   M99358
KEYWORDS    large T antigen; major structural protein VP1.
SOURCE      Rhesus macaque polyomavirus (strain Kid246) DNA.
  ORGANISM  Rhesus macaque polyomavirus
            Viridae; ds-DNA nonenveloped viruses; Papovaviridae;
            Polyomaviruses.
REFERENCE   1  (sites)
  AUTHORS   van Heuverswyn,H. and Fiers,W.
  TITLE     Nucleotide sequence of the Hind-C fragment of Simian Virus 40 DNA:
            comparison of the 5'-untranslated region of wild-type virus and of
            some deletion mutants
  JOURNAL   Eur. J. Biochem. 100, 51-60 (1979)
  STANDARD  full automatic
REFERENCE   2  (bases 1 to 840)
  AUTHORS   Ilyinskii,P.O., Daniel,M.D., Horvath,C. and Desrosiers,R.C.
  TITLE     Genetic analysis of simian virus 40 from brains and kidneys of
            macaque monkeys
  JOURNAL   J. Virol. 66, 6353-6360 (1992)
  STANDARD  full automatic
FEATURES             Location/Qualifiers
     variation       replace(11,"t")
                     /citation=[1]
                     /note="nucleotide 2239 in SV40 strain 776"
     variation       replace(440^441,"aac")
                     /citation=[1]
                     /partial
                     /note="nucleotides 2669-2671 in SV40 strain 776"
     variation       replace(526,"g")
                     /citation=[1]
                     /note="nucleotide 2757 in SV40 strain 776"
     mutation        replace(532^533,"tgatta")
                     /citation=[1]
                     /partial
                     /note="nucleotides 2764-2769 in SV40 strain 776"
     mutation        replace(544..554,"ag")
                     /citation=[1]
                     /note="absent in SV40 strain 776"
     mutation        replace(564,"a")
                     /citation=[1]
                     /note="nucleotide 2792 in SV40 strain 776"
     variation       replace(589,"g")
                     /citation=[1]
                     /note="nucleotide 2817 in SV40 strain 776"
     variation       replace(690,"c")
                     /citation=[1]
                     /note="nucleotide 2918 in SV40 strain 776"
     variation       replace(697,"g")
                     /citation=[1]
                     /note="nucleotide 2925 in SV40 strain 776"
     variation       replace(722,"a")
                     /citation=[1]
                     /note="nucleotide 2950 in SV40 strain 776"
     variation       replace(791,"t")
                     /citation=[1]
                     /note="nucleotide 3019 in SV40 strain 776"
     CDS             1..365
                     /partial
                     /note="partial"
                     /product="major structural protein VP1"
                     /codon_start=3
                     /translation="TVLLDEQGVGPLCKADSLYVSAVDICGLFTNTSGTQQWKGLPRY
                     FKITLRKRSVKNPYPISFLLSDLINRRTQRVDGQPMIGMSSQVEEVRVYEDTEELPGD
                     PDMIRYIDEFGQTTTRMQ"
     CDS             complement(460..840)
                     /partial
                     /note="partial"
                     /product="large T antigen"
                     /codon_start=1
                     /translation="PVAEFAQSIQSRIVEWIERLDKEFSLSVYQKMKFNVAMGTGVLD
                     WLRNSDNDDEDSQENADKNEDGGEKNMEDSGHETGIDSQSQGSFQAPQPSQSSQSVHD
                     QPYHICRGFTCFKKPPTPPPEPET"
BASE COUNT      233 a    173 c    178 g    256 t
ORIGIN      
        1 ccacagtgct gcttgatgag cagggtgttg ggcccttgtg caaagctgac agcttgtatg
       61 tttctgctgt tgacatttgt gggctgttta ccaacacttc tggaacacag cagtggaagg
      121 gacttcccag atattttaaa attaccctta gaaagcggtc tgtgaaaaac ccctacccaa
      181 tttccttttt gttaagtgac ctaattaaca ggaggacaca gagggtggat gggcagccta
      241 tgattggaat gtcctctcaa gtagaggagg ttagggttta tgaggacaca gaggagcttc
      301 ctggggatcc agacatgata agatacattg atgagtttgg acaaaccaca actagaatgc
      361 agtgaaaaaa atgctttatt tgtgaaattt gtgatgctat tgctttattt gtaaccatta
      421 taagctgcaa taaacaagtt aacaacaatt gcattcattt tatgtttcag gttcaggggg
      481 aggtgtggga ggttttttaa agcaagtaaa acctctacaa atgtgatatg gctgatcatg
      541 aacagactgt gaggactgtg agggctgagg ggcctgaaat gagccttgag actgtgaatc
      601 aatgcctgtt tcatgccctg agtcttccat gttcttctcc ccaccatctt catttttatc
      661 agcattttcc tggctgtctt catcatcatt atcactattt cttagccaat ctaaaactcc
      721 agttcccata gccacattaa acttcatttt ttgatacact gacaaactaa actctttgtc
      781 caatctctct atccactcca caattctgct ctgaatactt tgagcaaact cagccacagg
//