From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Aedes aegypti LINE retrotransposon Juan-A including DNA binding
Date: 6 Nov 92 18:07:53 GMT
Distribution: bionet
Checksum: 01878 10

LOCUS       MQSTRANSP    4709 bp ss-mRNA            INV       28-OCT-1992
DEFINITION  Aedes aegypti LINE retrotransposon Juan-A including DNA binding
            protein and reverse transcriptase-like protein mRNA, complete
            coding regions.
ACCESSION   M95171
KEYWORDS    DNA binding protein; LINE repetitive sequence; retroposon;
            retrotransposable element; retrotransposon; reverse transcriptase.
SOURCE      Aedes aegypti (strain Pacific) (library: Lambda EMBL 3) cDNA to
            mRNA.
  ORGANISM  Aedes aegypti
            Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
            Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicoidea;
            Culicidae.
REFERENCE   1  (bases 1 to 4709)
  AUTHORS   Mouches,C., Bensaadi,N. and Salvado,J.C.
  TITLE     Characterization of a LINE retroposon dispersed in the genome of
            three non sibling Aedes mosquito species
  JOURNAL   Gene (1992) In press
  STANDARD  full automatic
FEATURES             Location/Qualifiers
     transposon      <342..>4709
                     /standard_name="Juan-A retroposon"
                     /note="LINE retrotransposon"
     polyA_signal    4704..4709
     polyA_site      4709
     CDS             <1842..4490
                     /product="reverse transcriptase-like protein"
                     /codon_start=1
                     /translation="FKYFKLNARSLNGKEDELFNFLTVNNVHIAVITETYLKPGSKLK
                     RDPNFFVYRNDRLDGACGGVAIIIHRRIKHQLFSSFETKVFETLGVSVETQFGKYTFI
                     AAYLPFQCSGQQVNLLQTDLRKLTRNKSKFFVIGDFNAKHRSWNNSQSNSNGRILFDE
                     CSSGYFSIQYPDSPTCFSSSRNPSTIDLVLTDSSHLCSQLITHADFDSDHVPVTFQIS
                     QEAILNPISSTFNYLRADWNIYKTYVDSNLDVNISLETKLDIDNALETLTNSIVEARS
                     IAIPKCEVKFESVIIDDDLKLLIRLKNVRRRQFQATRDPAMKIIWQDLQKEIKKRFAQ
                     LRNKNFENKISQLDPGSKPFWKLSKILKKPQKPIPALKEENKLLLTNCEKAQKLAMQF
                     ESAHNFNLGLTSPIENQVTQEFENILNQENVFENAWETYLEEVRTIIKKFKNMKAPGD
                     DGIFYILIKKLPESSLSFLVDIFNKCFQLAYFPDKWKNAKVVPILKPDKNPAEASSYR
                     PISLLSSISKLFEKVILNRMMAHINENSIFANEQFGFRHGHSTTHQLLRVTNLTRANK
                     SEGYSTGLALLDIEKAFDSVWHEGLIVKLKNFNFPTYIVRIIQSYLSNRTLQVNYQNS
                     RSERLPVRAGVPQGSILGPILYNIFTSDLPELPQGCQKSLFADDTGLSAKGRSLRVIC
                     SRLQKSLDIFSSYLQKWEISPNASKTQLIIFPHKPKALYLKPSSRHVVTMRGVPINWS
                     DEVKYLGLMLDKNLTFKNHIEGIQAKCNKYIKCLYPLINRKSKLCLKNKLLIFKQIFR
                     PAMLYAVPIWTSCCNTRKKALQRIQNKILKMILRLPPWYSTNELHRISMLKHWNKCQI
                     QSLIISGKNRYNLLLPRLMRYMFRLS"
     CDS             342..1838
                     /product="DNA binding protein"
                     /codon_start=1
                     /translation="MVSTTNKRKGESLNSLLPSKKVGFKTVTTRGKNGRKDVSPECEL
                     SSKGEMNNCIEMSNQFDALDKFSEHQIEAASSSGSLIQVRKQRVPPIVVSCSEFGGFR
                     QEILNSIRGIKVSFQIAKKGDCRVLPETLKDRELLLKHLEEKKHNFFTYDDKTERLFK
                     VVLKGLSSDYKSPEEIKNGIIDLLGFSPVQVIIMKKRTQSGIVRKGLSQEFYLVHFNK
                     KELNNIKALEKAKLLFDVRVTWEHFQKPGGNYQNPTQCRRCQKWGHGTKNCRMDAKCM
                     ICGGSSHTKDVCPVKEDTTKFICCNCGANHKSNFWNCPSRKKVIEARARQMKDNIRYD
                     NGRFRNLPGRVSNNAHFSVNDRLIMNHTHQEDHNHAHSQTNFIPSGSRSNLSTSNVST
                     HGKSFADIVAGNSNSSPVRSMGTHSTCFKSNGKNPTATGNSASSSAENSNGKSHDMSA
                     SDFNFLTEQLNLMIDAMFKATTMTEAVQVGVKFTNQIVIGLRFSNGSK"
BASE COUNT     1544 a    884 c    823 g   1458 t
ORIGIN      
        1 ccagtgcgca tcgtaccttc gtgctgtgcg tacacgaatt ctctctgctc ttggaagttt
       61 tcttaaaaac tacctaaagc aataaaacag tacttttcag tgctacaaaa acagtacttt
      121 tcagtgctaa aattaaaaac ggtacttttc agtgctacta aaacagtact tttcagtact
      181 attttttcta ctattgatcc ctttacgatc cttgtttgga cccgtgcctt cgatttttcg
      241 ttggacccgt tggcgaaagc tagcggtggt aatccttctt ggacaccgtc ttgggaaaaa
      301 acctttcgaa ggtcacgtct tctttcgttt attaattaaa catggtatca acaactaaca
      361 aaaggaaggg tgaatctctg aattcactac ttccttccaa aaaagtgggt tttaaaactg
      421 tcactacacg tggcaagaat ggaagaaagg acgtttctcc ggaatgcgaa ctttcttcca
      481 agggtgaaat gaataattgt atcgaaatga gcaatcagtt cgatgctcta gacaaatttt
      541 ccgaacacca aatcgaagca gcctctagct caggctcttt gattcaagtg aggaagcaaa
      601 gagtgccgcc tatcgtggtc agttgttccg aatttggggg atttaggcag gagatcttaa
      661 actccattag gggaatcaag gtttccttcc aaatcgcaaa gaaaggagac tgtcgcgttt
      721 tgccggaaac tcttaaagat cgtgagcttc ttctcaaaca tcttgaagag aagaagcaca
      781 atttttttac ttatgacgac aaaactgaac gtttgttcaa agttgtcttg aaaggtctct
      841 caagtgacta taaatcacct gaagagatca aaaatggaat aattgattta cttggatttt
      901 ccccagtcca agtaatcatt atgaaaaaga gaacccaatc tggcattgtt cggaaagggc
      961 tttctcaaga attttattta gttcacttta acaaaaaaga actaaataat attaaagctt
     1021 tagaaaaagc aaaacttttg tttgatgtcc gtgtgacatg ggaacatttc cagaaacctg
     1081 gaggaaatta ccagaacccc actcagtgcc gtcggtgcca aaagtggggt catggtacaa
     1141 aaaattgtcg catggatgct aaatgcatga tttgcggagg ttcttctcac accaaagacg
     1201 tctgtccagt gaaggaagat accaccaaat tcatatgttg taattgcggg gctaaccata
     1261 agtccaattt ttggaattgt ccttcacgca aaaaagtcat tgaggctcgt gccaggcaga
     1321 tgaaagataa tatccgttac gataacggtc gtttccggaa tttgcctggt agagtatcga
     1381 acaatgctca tttttcagtt aacgatcgct tgatcatgaa tcatacccat caggaagatc
     1441 ataatcatgc tcattcacaa actaatttta ttccgtcggg tagccgttcg aatctttcta
     1501 cttcgaatgt atctacccac ggtaaatcct ttgccgatat cgtagcagga aattcgaact
     1561 cctcccctgt tcgatccatg ggtacccatt ctacttgttt caaatcaaat ggaaaaaacc
     1621 ctaccgccac aggtaactcc gcttcttcgt ctgccgaaaa ttccaatggg aaatcacatg
     1681 acatgtctgc ctctgatttt aattttctaa ctgaacaatt gaatctaatg attgatgcaa
     1741 tgttcaaagc caccactatg actgaagcag tccaagtagg tgtaaaattt acaaatcaaa
     1801 ttgttattgg attacgtttt tctaatggat ccaaataata atttaaatat tttaaattga
     1861 atgctcgttc tctgaatggt aaagaggacg agctgtttaa ttttcttacg gttaataacg
     1921 tgcatatagc agttattacc gaaacgtatt taaaacctgg atctaaactc aaaagagatc
     1981 ctaacttttt tgtttatcgt aatgatcgac ttgatggggc atgtggggga gttgcaatca
     2041 tcattcatag gcgtataaaa catcaactgt tttcatcatt tgaaactaaa gtttttgaaa
     2101 ctttaggtgt ttctgttgaa acacagtttg gtaaatatac tttcatagct gcctatttgc
     2161 cttttcaatg ctctgggcag caagttaatt tgctccaaac tgacttgcgt aaattgactc
     2221 gcaataagtc aaaatttttt gtcattggtg actttaatgc caaacatcgg tcatggaata
     2281 attctcaaag taattccaac ggcagaattt tatttgatga gtgctcttca ggatatttct
     2341 caattcaata ccctgatagc cccacatgtt tttcctcttc tagaaatcca tctacgattg
     2401 atttggtctt aaccgactct agtcatcttt gtagccaact gattactcat gctgattttg
     2461 attctgatca tgtccctgtt acatttcaaa tatcccaaga agcgattctc aatcctatca
     2521 gctccacttt caattattta cgagccgact ggaatatata taaaacgtat gttgactcca
     2581 atcttgatgt taacatttct ttagaaacta aacttgatat tgacaatgct cttgaaactt
     2641 taacaaattc cattgttgaa gcccggagca ttgcaattcc aaaatgtgaa gtaaaatttg
     2701 aatccgtgat tatagacgat gatcttaaac tcttgatccg tcttaaaaac gtgaggagaa
     2761 ggcaatttca agccactcgc gatcctgcta tgaaaattat atggcaggat ttgcagaaag
     2821 aaatcaagaa acgttttgct caattaagaa acaaaaattt tgaaaataaa atttctcaat
     2881 tggaccctgg ctctaagccc ttttggaaat tatcgaaaat cttgaaaaaa cctcagaagc
     2941 caataccggc attgaaagag gaaaacaaat tattactaac taattgcgaa aaagctcaaa
     3001 aacttgctat gcagtttgaa agtgcgcaca attttaattt aggacttact agtccaattg
     3061 aaaatcaagt tactcaggag ttcgaaaata ttctaaatca agagaacgtt ttcgaaaatg
     3121 cctgggagac ctatttggaa gaagtgagaa ctattattaa aaaattcaaa aacatgaaag
     3181 ctcctggcga tgatggaatt ttctacatcc tcatcaagaa acttccagaa agtagcttat
     3241 catttttagt tgatatattt aacaaatgtt ttcaattagc atattttcct gacaaatgga
     3301 aaaatgctaa ggttgttcca attttaaaac cagacaaaaa tcctgcagaa gcttctagct
     3361 atcgtccaat cagtttgctt tcctccatca gtaaactttt tgaaaaggtt attttgaaca
     3421 gaatgatggc ccacatcaac gaaaattcaa tttttgccaa tgaacagttc ggattccgcc
     3481 atggacattc gaccactcat caacttttac gtgtaacaaa tttgacccgt gccaacaaat
     3541 ctgaaggcta ttctactggt cttgctcttc tagacataga aaaagcattc gacagtgttt
     3601 ggcatgaagg tttgattgta aaattaaaaa acttcaattt tccaacatac attgttagaa
     3661 taattcaaag ttatctgtca aatcgtacac ttcaggttaa ttatcagaac tccagatctg
     3721 aaagacttcc tgtaagagct ggtgttcctc aaggcagcat tttgggacca atattataca
     3781 atattttcac atctgactta cctgagttac ctcagggatg tcaaaaatct ttgtttgcgg
     3841 atgacacagg cctctccgcc aaaggacgaa gcctgcgtgt catctgtagt cgattgcaaa
     3901 aaagtttgga tattttttct tcatacttgc aaaaatggga gatttctcct aatgcttcca
     3961 aaactcaact aataatattc ccacataaac caaaagctct ttatttgaaa ccttcaagta
     4021 gacatgttgt cacgatgaga ggggttccaa taaattggtc agatgaagtt aagtatctag
     4081 ggctcatgct agataagaat ttaactttca aaaatcacat tgagggcatt caagccaaat
     4141 gtaataaata tataaaatgt ctttatcccc ttattaatag aaaatcaaaa ctttgtctta
     4201 agaacaagct gttgatattc aaacaaattt tcaggccagc catgttgtat gctgtaccaa
     4261 tatggactag ctgttgtaat accaggaaga aagctctgca gagaattcaa aataaaattt
     4321 tgaaaatgat tctgaggctt cctccctggt atagtaccaa tgagttacat agaatatcaa
     4381 tgttgaaaca ttggaacaaa tgtcaaatac aatcattaat aatttcaggc aaaaatcgtt
     4441 acaatcttct attgccacga ttaatgcgtt atatgtttag gttaagttag gttaagtata
     4501 ttaaaaacgt tttttttctc ttataagcag gtgaaatcaa ctcacctgta aaaaaactga
     4561 actgctacgg caaatgaaat gtaatatgtt gttaacaaaa tgttaattta atcttaaatt
     4621 tgttttacca aattaggatg atagtgttgt caaataacac agaacaccta gatataagaa
     4681 atgaatgtaa tgttttttaa agaaataaa
//