From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Saccharomyces cerevisiae TY3-2 complete sequence: TYA3-2, 3' end;
Date: 10 Apr 92 10:15:07 GMT
Distribution: bionet
Checksum: 00972    11

LOCUS       YSCTY32A     5530 bp ds-DNA             PLN       10-APR-1992
DEFINITION  Saccharomyces cerevisiae TY3-2 complete sequence: TYA3-2, 3' end;
            TYB3-2, 3' end; ORF3, 3' end; and tRNA-Ile gene.
ACCESSION   M23367
KEYWORDS    retrotransposon; transposable element Ty3-2.
SOURCE      Saccharomyces cerevisiae DNA.
  ORGANISM  Saccharomyces cerevisiae
            Eukaryota; Fungi; Eumycota; Hemiascomycetes; Endomycetales;
            Saccharomycetaceae.
REFERENCE   1  (bases 1 to 5530)
  AUTHORS   Hansen,L.J., Chalker,D.L. and Sandmeyer,S.B.
  TITLE     Ty3, a yeast retrotransponson associated with tRNA genes, has
            homology to animal retroviruses
  JOURNAL   Mol. Cell. Biol. 8, 5245-5256 (1988)
  STANDARD  simple staff_entry
FEATURES             Location/Qualifiers
     CDS             365..1288
                     /note="encodes a protein with a motif found in the nucleic
                     acid-binding protein of retroviruses"
                     /note="ORF1 TYA3-2"
                     /codon_start=1
                     /translation="LFKRTIEKPNLATPHPSMSFMDQIPGGGNYPKLPVECLPNFPIQ
                     PSLTFRGRNDSHKLKNFISEIMLNMSMISWPNDASRIVYCRRHLLNPAAQWANDFVQE
                     QGILEITFDTFIQGLYQHFYKPPDINKIFNAITQLSEAKLGIERLNQRFRKIWDRMPP
                     DFMTEKAAIMTYTRLLTKETYNIVRMHKPETLKDAMEEAYQTTALTERFFPGFELDAD
                     GDTIIGATTHLQEEYDSDYDSEDNLTQNRYVHTVRTRRSYNKPMSNHRNRRNNNASRE
                     ECIKNRLCFYCKKEGHRLNECRARKASSNRS"
                     /partial
     CDS             1248..4913
                     /note="has homology to retroviral pol genes"
                     /note="ORF2 TYB3-2"
                     /codon_start=1
                     /translation="TNVEHVRRVLTDLELESKDQQTLFIKTLPIVHYIAIPEMDNTAE
                     KTIKIQNTKVKTLFDSGSPTSFIRRDIVELLKYEIYETPPLRFRGFVATKSAVTSEAV
                     TIDLKINDLQITLAAYILDNMDYQLLIGNPILRRYPKILHTVLNTRESPDSLKPKTYR
                     SETVNNVRTYSAGNRGNPRNIKLSFAPTILEATDPKSAGNRGNPRNTKLSLAPTILEA
                     TDPKSAANRGDSRTKTLSLATTTPAAIDPLTTLDNPGSTQSTFAQFPIPEEASILEED
                     GKYSNVVSTIQSVEPNATDHSNKDTFCTLPVWLQQKYREIIRNDLPPRPADINNIPVK
                     HDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKD
                     GTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDR
                     YKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDLRFVNVYLDDILIFSESPEE
                     HWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPT
                     PKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQLFICDKSQWTEKQDKAIEKLKAALCN
                     SPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAG
                     ELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPARRVQRWLDDLATYDFT
                     LEYLAGPKNVVADAISRAIYTITPETSRPIDTESWKSYYKSDPLCSAVLIHMKELTQH
                     NVTPEDMSAFRSYQKKLELSETFRKNYSLEDEMIYYQDRLVVPIKQQNAVMRLYHDHT
                     LFGGHFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIA
                     EGRWLDISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYI
                     FSYHGFPRTITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRL
                     LRAYVSTNIQNWHVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTPAIKSDDEVNAR
                     SFTAVELAKHLKALTIQTKEQLEHAQIEMETNNNQRRKPLLLNIGDHVLVHRDAYFKK
                     GAYMKVQQIYVGPFRVVKKINDNAYELDLNSHKKKHRVINVQFLKSLYTVQTRTQRIN
                     QSAPLRELREHTKLLHS"
                     /partial
     CDS             4805..5137
                     /note="ORF3"
                     /codon_start=1
                     /translation="CTIPEKFVYRPDAYPKNKPISSTERIKRAHEVTALIGIDTTHKT
                     YLCHMQDVDPTLSVEYSEAEFCQIPERTRRSILANFRQLYETQDNPEREEDVVSQNEI
                     CQYDNTSP"
                     /partial
     tRNA            5446..5519
                     /product="transfer RNA-Ile"
                     /gene="tRNA-Ile"
BASE COUNT     1946 a   1329 c    929 g   1326 t
ORIGIN
        1 tgttgtatct caaaatgaga tatgtcagta tgacaatacg tcaccctgaa cgttcataaa
       61 acacatatga aacaacctta taacaaaacg aacaacatga gacaaaaccc gaccttccct
      121 agctgaacta cccaaagtat aaatgcctga acaattagtt tagatccgag attccgcgct
      181 tccaccactt agtatgattc atattttata taatatataa gataagtaac attccgtgaa
      241 ttaatctgat aaactgtttt gacaactggt tacttcccta agactgttta tattaggatt
      301 gtcaagacac tccggtatta ctcgagcccg taatacaaca cctggtagcg ttaaaggtta
      361 ctaattgttc aaacgaacca tcgaaaagcc gaacctagct acaccacacc ccagtatgag
      421 ctttatggat caaatcccag gaggaggaaa ttatccaaaa ctcccagtag aatgccttcc
      481 taacttcccg atccaaccat ctttgacctt cagaggtaga aatgactcgc ataaactgaa
      541 aaactttatc tccgaaataa tgctaaacat gtctatgata tcttggccga atgatgccag
      601 tcgtattgtg tactgcagaa gacatttatt aaaccccgct gctcagtggg ctaatgattt
      661 tgtacaagaa caaggtatac ttgaaataac attcgacaca ttcatacaag gattatatca
      721 acatttctat aagccaccag atatcaataa aatctttaat gcaatcacgc aactttccga
      781 agctaaactt ggtattgagc gtctcaacca acgattcaga aagatttggg acagaatgcc
      841 accagacttc atgaccgaaa aagctgccat aatgacatat actaggctat tgacaaagga
      901 aacctataat attgtcagaa tgcacaaacc agagacatta aaagacgcca tggaagaggc
      961 ttaccagaca accgcactaa ctgaaagatt cttcccagga ttcgaacttg atgctgatgg
     1021 agacactatc atcggtgcca caacccactt acaagaagaa tacgactctg actatgattc
     1081 agaagataat ctgacccaga atagatacgt ccacaccgta aggacaagaa gatcttacaa
     1141 taaaccaatg tcaaatcatc gaaacaggag aaataacaac gcatccagag aagaatgtat
     1201 aaaaaatcgg ctatgcttct attgtaagaa agagggacat cgcctgaacg aatgtagagc
     1261 acgtaaggcg agttctaacc gatcttgaac tcgaatcaaa agaccaacaa actcttttta
     1321 tcaaaacctt accaattgta cactatatcg ccatccccga gatggacaat accgccgaaa
     1381 aaaccataaa aatacaaaac acgaaagtaa aaaccctgtt tgacagtgga tcacccacgt
     1441 catttatccg aagagatatt gtagaacttc tcaaatacga aatctacgag acccctccac
     1501 tccgttttag aggattcgta gccaccaaat ccgccgttac atccgaagca gtcaccattg
     1561 acctcaaaat caatgacctg cagataactt tagccgcgta catactggat aacatggact
     1621 accaattgtt aattggaaat ccaatcttac gccgctaccc gaaaatcctg cacacagtac
     1681 tgaataccag agagagcccc gactccttaa agcccaagac ttatcgctcc gaaaccgtta
     1741 ataacgttag aacctactcc gctggtaatc gtggtaaccc cagaaacata aaactgtctt
     1801 ttgcccccac cattctcgaa gcaactgacc cgaaatccgc tggtaatcgt ggtaacccca
     1861 gaaacacaaa actgtctctt gcccccacca ttctcgaagc aactgacccg aaatccgctg
     1921 ctaatcgtgg tgactccaga accaaaaccc tgtctcttgc aaccactact cctgcagcaa
     1981 ttgacccgct tacgaccctt gataacccag gtagtactca aagtacattt gcgcaattcc
     2041 cgatacctga agaagcgagc atcctagaag aggatggaaa atactccaac gttgtctcaa
     2101 ccattcagag tgtagaacct aatgctactg atcacagcaa taaggacacc ttttgcactt
     2161 tgccagtttg gttacaacag aagtatagag agatcatacg taatgatctc ccaccaagac
     2221 ctgccgacat taacaacatc cccgtaaaac atgatattga aattaaacct ggcgcaagac
     2281 tacctcgact acagccatac catgttacag aaaagaatga acaagaaatc aacaaaatag
     2341 ttcaaaaact gctcgataac aagttcattg ttccctcaaa gtcgccctgc agctcccctg
     2401 tagtcctcgt cccgaagaaa gacggtacct tccgactctg cgtcgattac cgcaccctga
     2461 acaaagctac catctccgac ccattcccat tacccagaat cgacaaccta ttgagccgta
     2521 ttggaaatgc ccagatattt accacgctag atttgcatag tggttaccac cagatcccga
     2581 tggaacccaa agaccgctac aaaaccgcct ttgtcacccc atccggtaag tatgaatata
     2641 ccgtcatgcc atttggctta gtcaatgcac ctagtacatt cgcaagatac atggctgata
     2701 catttagaga cctgagattc gtcaatgttt accttgatga tatattaatc ttctccgaat
     2761 ctccagaaga acattggaaa catttagaca cggtactaga aagattaaag aacgagaacc
     2821 tcattgttaa gaagaaaaaa tgtaaatttg catctgaaga aactgagttt ttaggctata
     2881 gtattggaat ccagaaaata gctccactac agcacaaatg tgcagcaatc cgagactttc
     2941 cgacgcctaa aacagtaaaa caagcacaga gatttttagg aatgattaat tactacagac
     3001 gattcattcc gaattgctcc aagattgcac agccaatcca actgtttatt tgtgacaaaa
     3061 gtcaatggac agaaaaacaa gacaaggcaa ttgagaaact aaaagccgcc ttgtgtaact
     3121 cccccgtcct agtaccattc aacaacaaag caaactaccg acttacaaca gacgcctcaa
     3181 aagacggcat tggtgctgtt ctagaagaag tcgacaacaa gaacaaactt gttggtgtcg
     3241 tcggttactt ctctaaatcc ttagagagtg cccagaaaaa ctatcctgct ggcgaattag
     3301 aactacttgg aattatcaaa gcactccacc acttccgata tatgcttcac ggaaagcatt
     3361 tcacgttaag aacagaccac attagtttgt tatcattaca aaacaagaac gaacccgcac
     3421 gacgcgtgca acgctggtta gatgacctag ccacatatga cttcacctta gaatacttag
     3481 ctggacccaa gaacgttgtc gcagatgcca tatcccgtgc catatatact ataacccccg
     3541 aaacatcccg acctatcgac acagaaagct ggaaatctta ctacaaatca gacccattat
     3601 gtagtgctgt cttaattcat atgaaagaat tgacacaaca caacgtcaca cctgaagata
     3661 tgtcagcctt ccgtagttac cagaagaaac tcgaactatc agagaccttc cgaaagaatt
     3721 attccctaga agacgaaatg atctattacc aagaccgact agtagtacca ataaaacaac
     3781 agaacgcagt tatgagactg tatcatgacc ataccttatt tggaggacat ttcggtgtaa
     3841 cagtgaccct tgcgaaaatc agcccaattt actattggcc gaaactacaa cattcgatca
     3901 tacagtacat caggacctgc gtacaatgtc aactaataaa atcacaccgt ccacgcttac
     3961 atggactatt gcaaccactc cccatagcag aaggaagatg gcttgatata tcaatggatt
     4021 ttgtgacagg attaccccca acatcaaata acttgaatat gatcctcgtc gtagttgatc
     4081 gtttctcgaa acgcgctcac ttcatagcta caaggaaaac tttagacgca acacaactaa
     4141 tagatttact ctttcgatac attttttcat atcatggttt tcccaggaca ataaccagtg
     4201 atagagatgt ccgtatgacc gccgacaaat accaagaact cacgaaaaga ctaggaataa
     4261 aatcgacaat gtcttccgcg aaccaccccc aaacagatgg acaatccgaa cgaacgatac
     4321 agacattaaa caggttacta agagcctatg tttcaaccaa tattcagaat tggcatgtat
     4381 atttaccaca aatcgaattt gtttacaact ctacacctac tagaacactt ggaaaatcac
     4441 catttgaaat tgatttagga tatttaccga atacccctgc tattaagtca gatgacgaag
     4501 tcaacgcaag aagttttact gccgtagaac ttgccaaaca cctcaaagcc cttaccatcc
     4561 aaacgaagga acagctagaa cacgctcaaa tcgaaatgga aactaataac aatcaaagac
     4621 gtaaaccctt attgttaaac ataggagatc acgtattagt gcatagagat gcatacttca
     4681 agaaaggtgc ttatatgaaa gtacaacaaa tatacgtcgg accatttcga gttgttaaga
     4741 aaataaacga taacgcctac gaactagatt taaactctca caagaaaaag cacagagtta
     4801 ttaatgtaca attcctgaaa agtttgtata ccgtccagac gcgtacccaa agaataaacc
     4861 aatcagctcc actgagagaa ttaagagagc acacgaagtt actgcactca taggaataga
     4921 tactacacac aaaacttact tatgtcacat gcaagacgta gacccaacac tttcagtaga
     4981 atactcagaa gctgaatttt gccaaattcc cgaaagaaca cgaagatcaa tattagccaa
     5041 ctttagacaa ctctacgaaa cacaagacaa ccctgagaga gaggaagatg ttgtatctca
     5101 aaatgagata tgtcagtatg acaatacgtc accctgaacg ttcataaaac acatatgaaa
     5161 caaccttata acaaaacgaa caacatgaga caaaacccga ccttccctag ctgaactacc
     5221 caaagtataa atgcctgaac aattagttta gatccgagat tccgcgcttc caccacttag
     5281 tatgattcat attttatata atatataaga taagtaacat tccgtgaatt aatctgataa
     5341 actgttttga caactggtta cttccctaag actgtttata ttaggattgt caagacactc
     5401 cggtattact cgagcccgta atacaacaga acatatgaaa tatgtggtct cttggcccag
     5461 ttgcttaagg caccgtgcta ataacgcggg gatcagcggt tcgatcccgc tagagaccat
     5521 atttttttgt
//