From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Simian immunodeficiency virus (clone B670S9) envelope glycoprotein
Date: 12 Sep 92 10:03:45 GMT
Distribution: bionet
Checksum: 26731     8

LOCUS       SIVENV       3595 bp ds-DNA             VRL       12-SEP-1992
DEFINITION  Simian immunodeficiency virus (clone B670S9) envelope glycoprotein
            (env) and Nef protein (nef) genes, complete CDS and partial LTR.
ACCESSION   M90048
KEYWORDS    env gene; envelope glycoprotein; external protein;
            long terminal repeat (LTR); nef gene; transmembrane protein.
SOURCE      Simian immunodeficiency virus (individual_isolate delta B670)
            (library: B670SL) lymph node DNA.
  ORGANISM  Simian immunodeficiency virus
            Viridae; ss-RNA enveloped viruses; Positive strand RNA virus;
            Retroviridae; Lentivirinae.
REFERENCE   1  (bases 1 to 3595)
  AUTHORS   Mullins,J.I., Murphey-Corb,M. and Contag,C.H.
  TITLE     Envelope sequence of Simian immunodeficiency virus from sooty
            mangabey delta B670
  JOURNAL   Unpublished (1992)
  STANDARD  full automatic
FEATURES             Location/Qualifiers
     CDS             1..2652
                     /standard_name="Env protein"
                     /note="external and transmembrane proteins"
                     /product="envelope glycoprotein"
                     /gene="env"
                     /codon_start=1
                     /translation="MGCLGNQLLIALLLLSASGIYCVQYVTVFYGIPAWRNATVPLFC
                     ATKNRDTWGTTQCLPDNGDYSELAINVTERFDAWNNTVTEQAIEDVWNLFETSIKPCV
                     KLTPLCITMRCNKTETDKWGLTGNVPTTTVPTATPSKETANVVNETSSCVKNNNCTGL
                     EPEPMVSCKFNMTGLKRDKQKEYNETWYSTDLICEQNTNESESKCYMNHCNTSIIQES
                     CDKHYWDTIRFRYCAPPGYALLRCNDTNYSGFAPNCSKVVVSSCTRMMETQASTWFGF
                     NGTRAENRTYIYWHGRSNRTIISLNKFYNLTIRCRRPGNKTVIPVTIMSGLVFHSQPI
                     NERPNQAWCWFEGSWKKAIQEVKETIVKHPRYTGTNDAERINLTAPRGGDPEVTFMWT
                     NCRGEFLYCKMNWFLNWVEDRNINGSIWKLQDKREQRKRNYVPCHIRQIINTWHKVGK
                     NVYLPPREGDLTCNSTVTSLIANIDWIDGNQTNITMSAEVAELYRLELGDYKLVEITP
                     IGLAPTNVRRYTTTGASRNKRGVFVLGFLGFLATAGSAMGAASLTLSAQSRTLLAGIV
                     QQQQQLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAQLNSWGCAFRQVCHTT
                     VPWPNDTLVPDWNNMTWQEWERKVDSLEANITQMLEEAQVQQEKNMYELQKLNSWDIF
                     GNWFDLTSWIRYIQYGVLIVLGVVGLRIVIYVVQMLARLRQGYRPVFSSPPAYVQQIP
                     IHKGQEPPTREGEEGDGGDRGGSRSWPWQIEYIHFLIRQLIRLLTWLFSNCRTCLLRI
                     YQILQPVFQRLFSILQRIREVVRTEISYLQYGCRWFQEAVQAGWRAAGETLASAWGDL
                     WETLGRVGRWVLAIPRRIRQGLELALL"
     CDS             2486..3277
                     /standard_name="Nef protein"
                     /gene="nef"
                     /codon_start=1
                     /translation="MGAAGSKKRSKQDGGLRERLLQARGETYGRLWEGLEDGYLQSRG
                     GLDKDWNLHSSEGQGYSEGQFMNTPWRNPATEREKLKYRQQNMDDVDDNDDELVGAPV
                     HPRVPLRAMSYKLAIDMSHFIKEKGGLEGIYYDNREHRILDIYLEKEEGIIPDWPNYT
                     PGPGERYPMFFGWLWKLVPVDVSNEAQEDETHCLVQPAQTSQWEDPWGEALVWKFDPQ
                     LAYRYEAFIKYPEEFGSKSGLSEEEVKRRLTARGLSKMADKKETS"
     LTR             3510..>3595
                     /gene="nef"
BASE COUNT     1141 a    662 c    908 g    884 t
ORIGIN
        1 atgggatgtc ttgggaatca gctgcttatc gcgctcttgc tattaagtgc ttcagggatt
       61 tattgtgttc aatatgtaac agtattctat ggtataccag catggaggaa tgcgacagtt
      121 cccctcttct gtgcaaccaa gaatagggat acttggggaa caactcagtg cttgccagat
      181 aatggtgatt attcagaatt ggccataaat gttacagaaa gatttgatgc ctggaacaat
      241 acagtcacag aacaggcaat agaggatgta tggaatctct ttgagacctc tataaaaccc
      301 tgtgtaaaat tgaccccctt gtgcattacc atgagatgca ataagacaga aacagacaaa
      361 tgggggttaa cagggaatgt accaacaaca acagtaccaa cagcaacacc atcaaaagaa
      421 acagcaaatg ttgtaaatga aactagttct tgtgtaaaaa acaataattg tacaggctta
      481 gagccggaac caatggtaag ctgtaaattt aacatgacag ggttaaaaag ggacaaacag
      541 aaagaatata atgaaacatg gtattcaaca gatttaatat gtgaacaaaa tactaatgaa
      601 agtgaaagta aatgttacat gaatcattgt aacaccagta ttattcaaga atcctgtgac
      661 aagcattatt gggatactat tagatttaga tattgtgcac cgccaggtta tgctttgctt
      721 aggtgtaacg atacaaatta ttcaggcttt gctcctaact gttctaaggt agtggtttct
      781 tcatgcacaa gaatgatgga gacacaagcc tctacttggt ttggtttcaa tggtactagg
      841 gcagaaaata gaacatacat ttattggcat ggtagaagta ataggaccat aattagctta
      901 aataagtttt ataatctaac aataagatgt agaaggccag ggaataagac agtcatacca
      961 gtcaccatta tgtcagggtt ggtcttccat tcgcaaccca taaatgagag acccaatcag
     1021 gcctggtgct ggtttgaggg aagttggaag aaggccatcc aggaagtgaa ggaaaccatt
     1081 gtcaaacatc ccagatatac tggaactaat gatgctgaga gaattaattt gacagctcca
     1141 agaggaggag atccagaagt tacctttatg tggacgaatt gtagaggaga gtttctctat
     1201 tgcaaaatga attggttcct taattgggtg gaggatagaa acataaatgg tagtatatgg
     1261 aagctacaag acaagagaga gcaacggaag agaaattatg tgccatgtca tattagacag
     1321 ataatcaaca catggcacaa agtaggcaaa aatgtgtatt tgcctcctag ggaaggagac
     1381 ctgacatgta attccactgt aactagcctc atagcaaata tagactggat tgatggcaac
     1441 cagactaaca ttaccatgag tgcagaagtg gcagaactgt atagattgga gttgggagat
     1501 tataaattag tagagatcac tccaattggc ttggccccca caaatgtaag aaggtacacc
     1561 acaactggtg cctcaagaaa taagagaggg gtctttgtgc tagggttctt gggttttctc
     1621 gcaacagcag gttctgcaat gggcgcggcg tcgctgacgc tgtccgctca gtcccggact
     1681 ttgttggctg ggatagtgca gcaacagcaa cagctgttgg atgtggtcaa gagacaacaa
     1741 gaattgttgc gattgaccgt ctggggaact aagaacctcc agactagagt cactgctatc
     1801 gagaagtacc tgaaggatca ggcgcagcta aattcatggg gatgtgcttt taggcaggtc
     1861 tgccacacta ctgtaccatg gccaaatgat acattggtgc ctgattggaa caacatgact
     1921 tggcaagagt gggagagaaa ggttgactcc ctagaggcaa atataactca aatgttggaa
     1981 gaagcacaag ttcagcagga aaagaatatg tatgaattgc aaaaattaaa tagctgggat
     2041 atttttggca attggtttga ccttacttct tggataagat atatacaata tggtgtgctt
     2101 atagttctag gagtagtagg gttaagaata gtgatatatg tagtacagat gttagctagg
     2161 ttaagacaag gttataggcc agtgttctct tcccctcccg cttatgttca gcagatccct
     2221 atccacaagg gccaggaacc gccaaccaga gaaggagaag aaggagacgg tggagacaga
     2281 ggtggcagca gatcttggcc ttggcagata gaatatattc atttcctgat ccgccagttg
     2341 attcgcctct tgacttggct attcagcaac tgcaggacct gtctcttgag aatataccag
     2401 atcctccaac cagtgttcca gagactcttc tcgatactac agagaatccg agaagttgtc
     2461 aggactgaga tatcctacct gcaatatggg tgccgctggt tccaagaagc ggtccaagca
     2521 ggatggaggg ctgcgggaga gactcttgca agcgcgtggg gagacttatg ggagactctg
     2581 ggaagggttg gaagatgggt acttgcaatc ccgaggagga ttagacaagg attggaactt
     2641 gcactcctct gaaggacagg gatacagtga gggacaattc atgaataccc catggagaaa
     2701 tccagctaca gagagagaaa agctaaaata tagacaacaa aacatggatg atgtagatga
     2761 taatgatgat gagctagtag gagcaccagt acacccaagg gtgccattaa gagccatgtc
     2821 atacaaattg gcgatagaca tgtctcattt tataaaagaa aaggggggac tggaagggat
     2881 ttattatgat aatagggaac atagaatctt agatatatac ttagaaaagg aagaaggcat
     2941 catcccagat tggccaaatt acacaccagg accaggagag agatacccaa tgttctttgg
     3001 ctggttatgg aaattagtcc cagtagatgt ctcaaatgaa gctcaggaag acgagacaca
     3061 ctgcttggtg caaccagctc agacatccca gtgggaagat ccctggggag aggctctggt
     3121 atggaagttt gatccacaac tagcctacag atatgaggct tttattaaat acccagaaga
     3181 gtttggtagt aagtcgggct tgtcagagga agaggtaaag agaaggctaa ccgcaagagg
     3241 cctttccaaa atggctgaca agaaggaaac aagctgagac agcagggact ttccacaaag
     3301 gggatgttat ggggaggtac tggggaggag ctggttggaa cgcccactta ttttctgtat
     3361 aaatacgact gcatttcgct ctgtattcag tcgctctgcg gagaggctgg cagattgagc
     3421 cctgggaggt tctctccagc actagcaggt agagcctggg tgttccctgc tagactctca
     3481 ccagcacttg gccggtgctg ggcagagtgg ctccacgctt gcttgcttaa agacctcttc
     3541 aataaagctg ccaattagaa gtaagctagt gtgtgttccc atctctccta gtcgc
//