From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Rice tungro bacilliform virus whole genome.
Date: 12 Sep 92 10:03:34 GMT
Distribution: bionet
Checksum: 01524    16

LOCUS       RTUWG        8002 bp ds-DNA   Circular  VRL       12-SEP-1992
DEFINITION  Rice tungro bacilliform virus whole genome.
ACCESSION   D10774 D01028 D01149 D10236
KEYWORDS    .
SOURCE      Rice tungro bacilliform virus DNA.
  ORGANISM  Rice tungro virus
            Viridae; ss-RNA nonenveloped viruses; Leviviridae.
REFERENCE   1  (bases 1 to 8002)
  AUTHORS   Kano,H., Koizumi,M., Noda,H., Hibino,H., Ishikawa,K., Omura,T.,
            Cabauatan,P.Q. and Koganezawa,H.
  TITLE     Nucleotide sequence of capsid protein gene of rice tungro
            bacilliform virus
  JOURNAL   Arch. Virol. 124, 157-163 (1992)
  STANDARD  full staff_review
COMMENT     Submitted (03-SEP-1991) to DDBJ by:
            Toshihiro Omura
            National Agriculture Research Center
            Ttukuba, Ibaraki 305
            Japan
            Phone:  0298-38-8932
            Fax:    0298-38-8929
FEATURES             Location/Qualifiers
     tRNA            1..19
                     /product="tRNA-Met"
     CDS             69..668
                     /partial
                     /product="24K polypeptide"
                     /codon_start=1
                     /translation="VPKRDLISQNIESRYEKLEFLDLAVWGKEKKQKYLLSTDNISFY
                     CYFDTSKTSESERKHTFHSDNKQLNSIVDLIIKHSEKTKNIKEELEKYSQFLDKILDL
                     KPTKKQVEKLLENQNLISKNFDYIKEQNTQLEKSLRKTVKLEDSINTLLVEIQQARPK
                     EVELRTLKIAEQNSKAIEKFEQEIKDLRGILEYLKHQAT"
                     /partial
     CDS             665..997
                     /product="12K polypeptide"
                     /codon_start=1
                     /translation="MSADYPTFKEALEKFKNLESDTAGKDKFNWVFTLENIKSAADVN
                     LASKGLVQLYALQEIDKKINNLTTQVSKLPTTSGSSSAGAIVPAGSNTQGQYKAPPKK
                     GIKRKYPA"
     CDS             994..6021
                     /product="194K polypeptide"
                     /codon_start=1
                     /translation="MNIRPFTGTSRTITQDSTSESNIKKGKNSTKRELIEEVDVNQEV
                     ENFDWKKLSGIKPNKLYEKNWQEKVKLKQQSIVSAYKEEAISVTHNAYTTTLFPQEVI
                     KNVKNQGKLYYHIGMMAIGVKGLHRRKIGTKVMIMFYDDSFGKAREASIGSIEMDMNA
                     GCGVFYSCPDFAKYIKDLSHLKIGIQTLGYENYEGKNLSVAIKTIGRLTTNIQSKYKI
                     NVKDIVEQISSQGIIMVAPMEIDSSHLDGNEWDLSKFLNHENTSRVPTKALIYQNLQG
                     GESLRFSNYKQTRMHDPTENNSDEDEDLKILGEQLNIKMARFYTMQTPEEELREVIQQ
                     LEREKQAMIAKLEAKMKESSKMAIVEDNFNPNNEYLEDTYSEYEDLEFEKLGLTGWED
                     LDQDSIETEEITEWENPNQVLHREIRAYKSVSEQIEDIFGELLKEHGNYDMALKNLEE
                     KYDLDKIEKAKSIEEIAKSSTSSEIRPTKRPKEEQTAYEDDMRDDWKRKELTVNPIEA
                     SKDRNFERIGSTYKKNFYPSRSEILNLDNVPPQFYYDQLVTWEGIVKNEWEARKKDGM
                     DMWSWMDGRITGLVLYLVQDWISKNQAAYNDIKSRGDRPENFVKMVKDRFLIEDPTDE
                     RRTALQRLAQRELEALNCEDPTKIQPFMAEYLKKASEAKKGFDVVYVERLFDRLPEAV
                     GKVVKADFVKDGNSYEAGIGIAVSYISTWMRAKCIKETEAKTQKKASLAFCRSIYTIG
                     DYKKRKILKRVTNYNKNRRKNYVRRPSIKKKCRCYICQDENHLANRCPRRYTNQARAS
                     LIDGLDEDIVSIASDDEDIENFLEIIELDEFIAHSSQEHEHTWEIGGKKDKVCEICSY
                     FTDYNKTVSCKTCETQYCKTCSDQLALEVTEVKKPTKEETMISDLKLNVKNLEFRVTI
                     LEHKVEMQNLQDKFETMQIRNKSEITEIPTTSLAMRANESNYIKTSINKTAGCYVETK
                     ISFNNENRIITALIDSGSTHNIICPTLIPASWINTTHREIIMFAVDNSKYNLNQELID
                     DIKLQFQEVDETFGIKYKLGQTYVAPQPTKTFIIGHRFLTNENGSVTIHKDYITIQKT
                     TGIYPTARHELKSEFARKHGGRPPLFSNIPEIYNKIPQLHSYQPQPILGYKNEIGNQS
                     LLTMVKELEALGFIGDDITKNRTTWVCDFKIINPDINITCATIPYTPADKEVFEKQIK
                     ELLDNKLIKKADPTCRHRTAAFIVRNHSEEVAQKPRIVYNYKRLNDNMHTDPFNIPHK
                     ISMINLIQKANIFSKFDLKAGFHHMKLKDDFKDWTTFTCSEGLYTWNVCPFGIANAPC
                     AFQRFMQESFGDLKFALLYIDDILIASNNEKEHIEHLKIFFNRVKEVGCVLSKKKSKM
                     FLKEVEYLGVEIKEGKISLQPHIVNKIKKFDKNKLNTLKGLQAYLGLLNYARGYIKDL
                     SKLVGPLYKKTGKNGQRIFNKEDWNIIFKIEREVSKIKPLERPKETDYIIIETDASEE
                     GWGAVLVCKPDKYSGKDTEKIAGYASGNFGEKKTWTSLDYEIEAINEALNKFQIYLDK
                     DFTIRTDCEAIVKGIKTEDYKKRSKTRWIKLRDNLLKDGYKPTFEHIKGNKNFLPNFL
                     SREGDFILKYLQNPDSTESYSIDSSESIPLYIDSKESHSIESDDSIPLYRDKLLPLVE
                     RLKEKSA"
     CAAT_signal     1950..1955
     CAAT_signal     2612..2617
     TATA_signal     3859..3865
     TATA_signal     4237..4243
     CDS             6042..7211
                     /product="46K polypeptide"
                     /codon_start=1
                     /translation="MNIEYPYSIHIIDKNKVPIYDQGNLFHTEKSARLSHVSRGLLDH
                     LFTFSSDNTERVRKLHILADYLYLLESERESYKNEWISLNDQVSLLQKQNSELRARIA
                     TNKEIIEGLREPVKKPIYTTQDKERLRVFFCEERSMEYIYYHIKRLAQQSYYSHLNKL
                     QKDCEPFRGVYMSFLTNVKFLVLCEAGYWTVPDIETNTTESLLSLSQKKGEDLLQKGV
                     VIFNELEGGYQLSPRFIGDLYAHGFIKQINFTTKVPEGLPPIIAEKLQDYKFPGSNTV
                     LIEREIPRWNFNEMKRETQMRTNLYIFKNYRCFYGYSPLRPYEPITPEEFGFDYYSWD
                     NMVDEDEGEIVYISKYTKIIKVTKEHAWAWPEHDGDTMSCTTSIEDEWIHRMDNA"
     enhancer        6278..6284
     CAAT_signal     7151..7156
     TATA_signal     7373..7379
     polyA_signal    7598..7603
     enhancer        7881..7887
BASE COUNT     3271 a   1244 c   1440 g   2047 t
ORIGIN
        1 tggtatcaga gcgatgttcg aactttaagg gaaaaataga atacaatcta gtcaaactaa
       61 ttacataagt tccgaagagg gatcttattt ctcaaaatat tgagtcacgt tacgaaaaac
      121 ttgaattctt agacttagca gtctggggaa aagagaaaaa acaaaaatat ttactatcta
      181 ccgataatat tagcttttat tgttactttg atactagtaa aactagtgaa tcagaaagaa
      241 agcatacctt tcattctgat aataagcaac tcaatagtat tgtagacctt attattaagc
      301 attctgaaaa aaccaaaaat attaaggaag aattagaaaa atatagtcag ttcctagata
      361 agattttaga tctaaagcct actaaaaaac aagtcgaaaa actattagaa aatcaaaact
      421 taattagcaa gaactttgat tatatcaaag aacaaaacac tcaactagaa aaatccctaa
      481 gaaaaacagt taagttagaa gactccatta atactctatt agtagaaata caacaagcta
      541 gacctaagga agtagaatta agaactctta agatagcaga acaaaactct aaagcaatag
      601 aaaaatttga gcaagaaatt aaggatctaa gaggaatctt agaatacctt aagcatcaag
      661 ctacatgagc gctgattatc caactttcaa ggaagccctt gaaaagttta aaaacctaga
      721 atcagataca gccggaaaag ataagtttaa ttgggtattt actctagaaa atataaagtc
      781 agctgcggac gtaaatttag catctaaggg tttagtacaa ctttatgctt tacaagaaat
      841 tgataaaaag attaataatc ttacaaccca agttagtaag ttacctacaa ctagtggaag
      901 tagttcagca ggagctatag tacctgcagg tagtaacacc caaggtcagt acaaagcacc
      961 acctaagaaa ggaattaaga gaaaatatcc agcatgaata ttagaccatt tactggtact
     1021 tctagaacta taacccaaga ttcaacctct gaatctaata taaaaaaggg aaaaaactca
     1081 acaaaaagag aattaataga agaagtagat gttaatcaag aagtagaaaa ctttgattgg
     1141 aaaaaactat caggaattaa acctaataaa ctatatgaga aaaattggca agaaaaagtt
     1201 aagttaaaac aacaatctat agtttcagca tataaagaag aagctattag tgtaactcat
     1261 aatgcatata ctactacttt atttccacaa gaagtaatta aaaatgttaa gaatcaggga
     1321 aaactttatt atcatatagg catgatggcc ataggagtta aaggacttca tagaagaaaa
     1381 ataggaacta aagtcatgat aatgttttat gatgatagtt tcggtaaagc tagggaagct
     1441 agcattggat cgatagaaat ggatatgaac gccggttgtg gagtgttcta ctcctgccct
     1501 gactttgcaa aatatattaa agatttatca caccttaaga tagggataca aaccctagga
     1561 tatgaaaatt atgaaggaaa aaacctttcg gtagcaatca aaactatagg aagattgacc
     1621 accaatatac agtcaaaata taagataaat gtgaaagata ttgtagaaca gatatcatca
     1681 caaggaatca ttatggtagc acccatggaa atagattcat cacacctaga tgggaatgaa
     1741 tgggatctta gtaaattctt aaaccatgaa aacacaagta gagtcccaac caaagcccta
     1801 atatatcaga atctacaagg aggagaatcc ttaagatttt caaattataa gcaaactaga
     1861 atgcatgatc ctactgaaaa caattcagat gaagatgaag atttaaaaat cttaggagaa
     1921 caactaaata ttaaaatggc aagattttac acaatgcaaa ccccagaaga agaattacga
     1981 gaagtaattc aacaattaga aagagaaaaa caagccatga tagcaaaact agaagctaaa
     2041 atgaaagagt catctaaaat ggcaatagta gaagataatt tcaatccaaa taacgaatat
     2101 ctagaagata catattctga atatgaagat ctagaattcg agaaattagg attaactgga
     2161 tgggaagact tagatcagga ttccatagaa accgaagaaa taactgaatg ggaaaatcct
     2221 aatcaagtac ttcatagaga aattagagca tataaatcag tatctgaaca aatagaagat
     2281 atatttggag aactattaaa agaacacgga aactatgata tggcccttaa aaacctagaa
     2341 gaaaaatacg acttagataa aatagaaaag gccaaatcta tagaagaaat agctaaatca
     2401 tctacatcat cagaaattag gccaaccaaa agacctaaag aagaacaaac agcctatgaa
     2461 gatgatatga gagatgattg gaaaagaaaa gaattaacag taaatcctat agaagcctca
     2521 aaagatagaa attttgaaag aataggaagt acatataaga aaaactttta ccctagtaga
     2581 agtgaaatat taaacttaga taacgttccc ccacaatttt actatgacca gctagtaacc
     2641 tgggaaggaa tagttaaaaa tgaatgggaa gcacgtaaga aagatgggat ggatatgtgg
     2701 tcttggatgg atggtagaat aacaggatta gtgttatatt tagtccaaga ttggatatct
     2761 aaaaatcagg cagcctataa tgatataaaa tctagaggtg atagacctga aaacttcgta
     2821 aaaatggtaa aagataggtt cttaatagaa gatcctacag atgaaagaag aacagcatta
     2881 caaaggttag cacaaagaga attagaagcc ttaaactgcg aagatcctac taaaattcaa
     2941 ccatttatgg ctgaatatct taagaaagca tcagaagcca aaaaaggatt tgatgtagtt
     3001 tatgtagaaa gactctttga tagactacca gaagcagtag gaaaggtagt aaaagcggac
     3061 tttgtcaaag acggtaattc ctatgaagca ggaataggaa tagcagtttc atatatatct
     3121 acatggatga gagcaaaatg cattaaggaa acagaagcta aaactcaaaa gaaagcatcc
     3181 ttagcattct gtagatccat atatactata ggagattata agaaacgaaa aatcctaaaa
     3241 agagttacaa actataataa aaataggaga aaaaactatg tcagaagacc tagcattaag
     3301 aaaaaatgca gatgttatat ctgtcaagat gaaaaccacc tagctaatag atgtcctaga
     3361 agatatacta atcaggctag agcaagtcta atagatggat tagacgaaga tatagtatct
     3421 atagcatcag atgacgagga tattgaaaat ttccttgaaa taatagaact tgatgaattt
     3481 atagcacatt ctagtcaaga acatgaacat acatgggaaa tcggaggaaa gaaagataag
     3541 gtatgtgaaa tttgcagtta ttttacggat tataataaaa ctgttagctg caaaacctgt
     3601 gaaacccaat actgcaaaac atgttctgat caactagcac tagaagtaac agaagtcaaa
     3661 aaacctacaa aagaagaaac aatgataagc gacctaaaat taaatgttaa aaatctagaa
     3721 tttagagtca ccattctaga acataaggta gaaatgcaga atcttcaaga taaattcgaa
     3781 actatgcaaa ttagaaataa atcagaaata acagaaatac caacaacctc attagctatg
     3841 agagcaaatg aatcaaatta tataaaaaca tcaattaata aaactgcagg atgttatgta
     3901 gaaacaaaaa tttcatttaa caatgaaaac agaatcataa cagccctaat agactcagga
     3961 tcaacacata atataatatg tccaacattg ataccagcat catggattaa tactacacat
     4021 agagaaatta taatgtttgc tgtagataat agcaaatata atctgaatca agaattaata
     4081 gatgatatca aattacaatt ccaagaagtt gatgaaactt ttggaataaa atataaatta
     4141 ggacaaacct atgtagcacc tcagccaaca aaaacattta taataggaca cagattcctt
     4201 acaaatgaaa atggtagtgt tacaatccat aaagattata taactataca aaaaactaca
     4261 ggaatatacc caacagccag acacgaactt aaatcagagt ttgcgcgaaa gcatggtgga
     4321 cgcccgccat tattttcaaa cattcctgaa atctataaca aaattcctca gttgcattca
     4381 tatcagcctc aaccaatatt aggatataag aatgaaatag gaaatcaaag tttactcact
     4441 atggtgaaag aattagaagc acttggattc ataggagatg acattactaa aaacagaaca
     4501 acgtgggtat gtgacttcaa aatcataaac ccagatatta atataacttg tgcaacaatt
     4561 ccatacacac cagcagataa agaagtattt gaaaaacaaa ttaaagaact actagataat
     4621 aagttaatca agaaagctga tccaacatgc aggcatagaa cagcagcatt tatagtaaga
     4681 aaccattctg aagaagtagc tcagaaacct cgaatagtct ataactataa acgtttgaat
     4741 gataatatgc atacagatcc ttttaatatt cctcataaga tttcaatgat taatctaata
     4801 cagaaagcta atatattttc taagtttgat ttaaaagcag gatttcatca tatgaaatta
     4861 aaagatgatt tcaaagattg gactactttt acatgctcag aaggattata tacttggaac
     4921 gtctgtccat ttggtatagc taacgcccct tgtgcatttc aaagatttat gcaggaatcc
     4981 tttggagatt taaagtttgc attattatat atagatgaca tacttattgc atctaataac
     5041 gaaaaagagc atatagaaca tcttaagatt ttctttaata gagtaaaaga agtaggatgt
     5101 gttcttagta agaaaaaatc aaaaatgttt cttaaagaag tagaatatct tggagtagaa
     5161 attaaagaag gaaagattag tcttcagccg catatagtta ataagatcaa aaaatttgat
     5221 aaaaataaac tcaacaccct aaagggacta caagcatatc tagggttact caattatgcc
     5281 agaggataca tcaaagacct atcaaagcta gtaggaccac tttataaaaa gacaggaaaa
     5341 aatgggcaaa gaatctttaa caaagaagat tggaatatca tctttaagat agaaagagag
     5401 gtatcaaaga taaagccttt agaaagacct aaagaaaccg actacatcat tatagagaca
     5461 gatgcgtcag aagaaggctg gggagcagtc ttagtctgta agccagataa atatagtggc
     5521 aaggacactg agaaaatagc agggtatgca tcaggaaact ttggagagaa gaaaacctgg
     5581 actagtttag attatgaaat agaagctata aatgaagccc taaacaagtt ccagatatac
     5641 ttagacaaag attttacaat cagaactgat tgtgaagcaa tagtgaaagg gataaaaaca
     5701 gaagattata aaaagagatc aaaaaccaga tggattaagt taagagataa cctcttaaaa
     5761 gatggataca agcctacctt tgagcatatc aagggaaaca aaaacttttt accaaacttc
     5821 ttatcccgtg agggagattt tattttaaaa tatcttcaaa accccgattc tacggaatca
     5881 tattctatag attcgtcaga atcaattcca ctatatatcg attcaaaaga atcacattct
     5941 atagagtctg atgactcaat tccactatac agggacaagc ttcttcctct agtcgaaagg
     6001 ctaaaggaaa agagtgccta actaaggtcg gaggcatcac catgaatata gagtacccgt
     6061 actcaatcca cataatagac aagaacaagg ttccgatcta cgatcaagga aatctcttcc
     6121 acactgagaa gtctgcaaga ctttcacatg tgtccagagg tttgctggat catctcttta
     6181 ctttttcgtc tgataatact gagcgagtta ggaagctcca catattagcc gattatcttt
     6241 acctattaga aagtgagaga gagtcatata aaaatgagtg gattagcttg aatgatcaag
     6301 ttagtcttct acaaaaacaa aatagtgagt tgagagctag gatagccacc aacaaagaaa
     6361 taatagaggg actgagagag ccagttaaaa agccaatata cacaacccag gataaagaga
     6421 ggctccgtgt tttcttttgc gaagaaagaa gcatggaata tatatattat catataaaaa
     6481 ggctagctca gcagagctat tattcccacc taaataaatt acagaaggat tgtgaaccct
     6541 ttcgaggggt ctacatgtct ttcttaacta atgttaaatt cctagtatta tgtgaagctg
     6601 gatactggac tgtaccagat atagaaacta atactacaga gtctttatta agtctatccc
     6661 agaagaaagg agaagatctt ctacaaaagg gagtagtaat atttaatgag cttgaaggag
     6721 gatatcagct ttctccaaga ttcattggag acctttatgc tcatggtttt attaaacaaa
     6781 taaacttcac aaccaaggtt cctgaagggc taccgccaat catagcggaa aaacttcaag
     6841 actataagtt tcccggatca aataccgtct taatagaacg agagattcct cgctggaact
     6901 tcaatgaaat gaaaagagaa acacagatga ggaccaactt atatatcttc aagaattatc
     6961 gctgtttcta tggctattca ccattaaggc catacgaacc tataactcct gaagaatttg
     7021 ggtttgatta ctacagttgg gataatatgg ttgatgaaga cgaaggagaa attgtataca
     7081 tctccaagta tactaagatt atcaaagtca ctaaagagca tgcatgggct tggccagaac
     7141 atgatggaga cacaatgtcc tgcaccacat caatagaaga tgaatggatc catcgtatgg
     7201 acaatgctta aagaagcttt atctaaagca actttaagta cgaatcaata aagaaggacc
     7261 agaagatata aagcgggaac atcttcacat gctaccacat ggctagcatc tttactttag
     7321 catctctatt attgtaagag tgtgtaatga ccagtgtgcc cctggactcc agtatataag
     7381 gagcaccaga gtattgtaat agatcatcga tcaagcaagc gagagctcaa acttctaaga
     7441 gagcaagaga ggagcttatc ctctcaaccc ctcttcaaga agcaaaggcg atcaatggct
     7501 caggtcagtg agtagtcgtc tttaaggttc ctctaggaac ctctgtgtaa tatgtttgta
     7561 cttatgattg tatttctcaa aacctatccg ctgcatgaat aaagctctta tatttatcct
     7621 acacccttgt gataaaacat gaagtcatac tcgttctaag attaagtgtt ctaaaaaata
     7681 cttcgaagca ttgaaaaggg ggctaaaggg ggaaaaagta ccgtcaggcc gtgttatggc
     7741 aagggaagaa gtaccatgaa taccctatag atgttagaag gaagataaga actaagtatc
     7801 ttatgaacaa tgggtagctg atttctgatt atcattaaca agtaccgtta taatccataa
     7861 gctttgaaag atctgctagt gtggatacca aaaggctgtc gtggttcgcc cagtcgacgg
     7921 atgaggtcat aaacgaagca ctagtaggta actaagaggc ttagggatga gcaacgagaa
     7981 aagttagggg ggtgcctaga aa
//