From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Rabbit SINE (C37 and C38) complete repeat unit and LINE (L10c6)
Date: 22 Jul 92 10:03:36 GMT
Distribution: bionet
Checksum: 64161     5

LOCUS       RABLINE1E    2263 bp ds-DNA             MAM       22-JUL-1992
DEFINITION  Rabbit SINE (C37 and C38) complete repeat unit and LINE (L10c6)
            repeat unit, 5'end.
ACCESSION   M93325
KEYWORDS    LINE1 (L10c6) repetitive sequence; SINE repetitive sequence.
SOURCE      Oryctolagus cuniculus (strain New Zealand white) liver DNA.
  ORGANISM  Oryctolagus cuniculus
            Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
            Eutheria; Lagomorpha; Leporidae.
REFERENCE   1  (bases 1 to 2263)
  AUTHORS   Ayres,J.A., Pasqualone,D.M., Cabell,C.H., Miller,W. and
            Hardison,R.C.
  TITLE     The 5' end of LINE1 repeats in rabbit DNA define subfamilies and
            reveal a short sequence conserved in rabbits and humans
  JOURNAL   Unpublished (1992)
  STANDARD  full staff_review
FEATURES             Location/Qualifiers
     repeat_unit     364..697
                     /rpt_family="SINE"
                     /rpt_type=dispersed
                     /standard_name="C37"
                     /evidence=EXPERIMENTAL
                     /citation=[1]
     repeat_unit     837..1184
                     /rpt_family="SINE"
                     /rpt_type=dispersed
                     /standard_name="c38"
                     /evidence=EXPERIMENTAL
                     /citation=[1]
     repeat_unit     1348..>2263
                     /rpt_family="LINE1"
                     /rpt_type=dispersed
                     /standard_name="L1Oc6"
                     /evidence=EXPERIMENTAL
                     /citation=[1]
     misc_feature    1790..2263
                     /note="ORF contains mutations indicative of the L10c6
                     repeat being inactive."
                     /note="ORF 1"
                     /note="putative"
BASE COUNT      744 a    482 c    497 g    540 t
ORIGIN
        1 gaattctaag gttgcattta ggtaaatgag aaatcaccta ctatggttga gtcaatatat
       61 atttttaggt tagtttgtaa cagaagatag cattgtctta actcatatat atcatgctat
      121 tcctctggag aaattctttc actcattgag tagcacactc taggtaatct tagaatgaca
      181 cattaacatc cttgtatcta aatgtgactt gttctacagt ctcattctac ttaatccttg
      241 actcaaccac ccatggctaa agaaaccata tcctatactt caagcaaaat gaattacatg
      301 aaaataccag aaaaaaaata cattcatgct cacatgcatg ctattttttc atattagaat
      361 acatttttgg gccagtgctg tggtgtagta ggccaggcct ctgcctgcag aagtggcatc
      421 ccatattggt gccagttcaa gtcccagctg ctcctcttct gacccagttc cctgctgatg
      481 gcctgagaaa gagtgtaaga tggcctaagt gcttgggcac ctgcacccac gtgggagatc
      541 tggaaaaagc tcctggctcc tggctttgga tgggcccagc tctgaccatt gcagccattt
      601 ggaggaatga cctagcagat gggagacctt ctctgtctca ccctctctct gtctgtaact
      661 ctacctctca acaaaataaa taatatcttt aaaaaagata cattctcttt ctcctgtctc
      721 ataacagaaa tattttatca ttcatggagc aattcacatt gtaatcctaa tacattttat
      781 ctgatatagc ctctcatttc cactcctata acacattctt aaaaatatgc atcatagggc
      841 cggcgctgcg gctcactagg ctaatcctcg tagcggcgcc ggcacaccag attctagtcc
      901 ggtcggggtg ccggattctg tcccggttgc ccctcttcca gggccagctc tctgctgtgg
      961 ccagggagtg cagtggagga tggtccaggt gcttgggccc ctgcacccca tgggagacca
     1021 ggaaaagcac ctggctcctg gctcctgcca tcggatcagc gcggtcgcgc ggccgcagcg
     1081 ccgccggccg cggcggccag tggagggtga accaacggca aaggaagacc tttctctctg
     1141 tctctcactg tccactctgc cggtcaaaaa aataaaaaaa aaatatgcat cataacatta
     1201 actgtatttc taaattaaga agtagtttag ctgtctgtat gtttattttc aaacatggat
     1261 tgctattttt accttgaaga acaagatcgc ttcttgttca tccttataat ctcccaacaa
     1321 ataatccaga ctcttaaata aagtaggcac ttggagtcct ccaagatggc agaatagggg
     1381 gaaggaggag gagggggagg gggaggggga gggggaggag gaaggaggaa ggaggaagag
     1441 gaggaggagg aaggagggaa ggagggaggg agggaggatt taccacgcca aacctgggtg
     1501 tgtcaccttt ggcacaccct taaccctgaa gaactgaaca gagatctggc catacccatc
     1561 acaagcctct aaagatccac caaaagcaga cagcccaatt aatctagagt catagtataa
     1621 gaagaaaagc caccacagcg aggaaaaaaa gaagaaacca aagaatatct ccacaacacc
     1681 aagcaacaaa tgcagaaacc gaggaaacaa gaacaaggaa gacatcatga cactcccaaa
     1741 tgaacatgac actccaattc aagattatga agatgatgag atagaagaaa tgcaagatca
     1801 ggatttcaaa agatttatga taagaacatt tagaagttct caacaacaaa ttcttaaact
     1861 acagaaatcc ttactggaca ggatagaaaa tctctcgcgt gaaaatgaaa tcttaaggag
     1921 gaatcaagat gaaatgaagg aatctagtag aactgaaatt gtgatattga agagaaatca
     1981 aaatgaaatg aagaattcga attcaaaaga tcaaaggaca aacgcattag agacccttaa
     2041 aaacagaatc agtgaagcag aagagagaat atcagactta gaagacagag aacagaaagt
     2101 atacagtcaa accaaaatat tgttggaatc taaggatact attaaaacca acattcggtc
     2161 taggagttct gaacgcagag aggagaagat agacagttca atggagcact acgagaactc
     2221 agttgagaga ataacgatct atcgaagcta tgacctatac atc
//