From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Human immunodeficiency virus type 1, isolate AL-1; tat, rev env
Date: 29 Sep 92 10:05:26 GMT
Distribution: bionet
Checksum: 06975     7

LOCUS       HIVALA1      2907 bp ss-RNA             VRL       29-SEP-1992
DEFINITION  Human immunodeficiency virus type 1, isolate AL-1; tat, rev env
            coding sequences; infectious molecular clone.
ACCESSION   M38430
KEYWORDS    .
SOURCE      Human immunodeficiency virus type 1, isolate AL-1. Infectious
            molecular clone (subcloned into pNL4-3).
  ORGANISM  Human immunodeficiency virus type 1
            Viridae; ss-RNA enveloped viruses; Positive strand RNA virus;
            Retroviridae; Lentivirinae.
REFERENCE   1  (bases 1 to 2907)
  AUTHORS   Buckler-White,A. and Theodore,T.
  JOURNAL   Unpublished (1988)
  STANDARD  full staff_entry
COMMENT
            Computer-readable copy of sequence kindly provided by C.Buckler,
            NIAID, Bethesda, MD., 10-NOV-1988. Virus isolated by co-cultivation
            from a male patient with frank AIDS (January 1985, Birmingham). For
            further details, contact Dr. Malcolm Martin, LMM, NIAID, NIH.
FEATURES             Location/Qualifiers
     exon            <1..20
                     /number=2
                     /gene="tat"
     exon            <1..20
                     /number=2
                     /gene="rev"
     CDS             200..2749
                     /product="env polyprotein"
                     /gene="env"
                     /codon_start=1
                     /translation="MRVKGIRRNYQRLWRWGIMLLGILMICSATEKLWVTVYYGVPVW
                     KEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEIVLENVTENFNMWKNNMVEQ
                     MHEDIISLWDQSLKPCVKLTPLCVTLHCIDYLNATNTTSSNGTKMERGEIKNCSFNIT
                     TSIRDKMQKESALFHKLDVVPIDNNNTSYILISCNTSVITQACPKVSFQPIPIHYCAP
                     AGFAILKCKDKKFNGKGTCKNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSDNFT
                     DNAKTIIVQLNESVEINCTRPNIYRKGRIHIGPGRAFHTTRQIIENIRQAHCNISRAK
                     WEDTLKQIVEKLREQFKNKTIVFNQSSGGDPEIVTHSFNCGGEFFYCNSTQLFNSTWN
                     STEGPKGSNNTEENITLPCRIKQIVNMWQEVGKAMYAPPIEGQIRCSSNITGLLLTRD
                     GGNSSNNTEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGL
                     GALFLGFLGAAGSTMGARSMTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGI
                     KQLQARVLAVERYLRDQQLLEIWGCSGKLICTTTVPWNASWSNKSLNQIWDNMTWMEW
                     EREIDNYTSLIYTLIEESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKIFIMIV
                     GGLVGLRIVFSVLSIVNRVRQGYSPLSFQTRLPARREPDRPEGIEEEGGERDRDRSGR
                     LVDGLLALIWVDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWEVLKYWWNLLQYWSQ
                     ELKNSAVSLLNATAIAVAEGTDRVIEVLQRAFRAILHIPRRIRQGFERALL"
     exon            2333..2423
                     /number=3
                     /gene="tat"
     exon            2333..2607
                     /number=3
                     /gene="rev"
     CDS             2751..2907
                     /gene="nef"
                     /codon_start=1
                     /translation="MGGKWSKRSGGGWPAVRERMRQAEPAADGVGAASRDLEKHGAIT
                     SSNTAANN"
                     /partial
BASE COUNT     1034 a    485 c    696 g    692 t
ORIGIN      In the first coding exon for tat and rev.
        1 caagcttctc tatcaaagca gtaagtagtg catgtaatac aatctttaga aatattagca
       61 atagtagcat tagtagtagc aataataata gcaatagttg tgtggtccat agtactcata
      121 gaatatagga aaatattaag acaaaggaaa atagacaggt taattgatag aataagagaa
      181 agagcagaag acagtggcaa tgagagtgaa ggggatcagg aggaattatc agcgcttgtg
      241 gagatggggc atcatgctcc ttgggatatt gatgatctgt agtgctacag aaaaattgtg
      301 ggtcacagtc tattatgggg tacctgtgtg gaaagaagca accaccactc tattttgtgc
      361 atcagatgct aaagcatatg atacagaggt acataatgtt tgggccacac atgcctgtgt
      421 acccacagac cccaacccac aagaaatagt attggaaaat gtgacagaaa attttaacat
      481 gtggaaaaat aacatggtag aacagatgca tgaggatata atcagtttat gggatcaaag
      541 cctaaagcca tgtgtaaaat taaccccact ctgtgttact ttacattgca ttgattattt
      601 gaatgctact aataccacta gtagtaacgg gacaaagatg gagagaggag aaataaaaaa
      661 ctgctctttc aatatcacca caagcataag agataagatg cagaaagaat ctgcgctttt
      721 tcataaactt gatgtagtac caatagataa taataatacc agctatatat tgataagttg
      781 taacacctca gtcattacac aggcctgtcc aaaggtatcc tttcagccaa ttcccataca
      841 ttattgtgcc ccggctggtt ttgcgattct aaagtgtaaa gataagaagt tcaatggaaa
      901 aggaacatgt aaaaacgtca gcacagtaca atgtacacat ggaattagac cagtagtatc
      961 aactcaactg ctgttaaatg gcagtctagc agaagaagag gtagtaatta gatctgacaa
     1021 tttcacggac aatgctaaaa ccataatagt acagctgaac gaatctgtag aaattaattg
     1081 tacaagaccc aacatctata gaaaaggaag gatacatata ggaccaggga gagcatttca
     1141 tacaacaaga caaataatag aaaatataag acaagcacat tgtaacatta gtagagcaaa
     1201 atgggaggac actttaaaac agatagttga aaaattaaga gaacaattta agaataaaac
     1261 aatagtcttt aatcaatcct caggggggga cccagaaatt gtaacacaca gttttaattg
     1321 tggaggggaa tttttctact gtaattcaac acaactattt aatagtactt ggaatagtac
     1381 tgaagggcct aaagggtcaa ataacactga agaaaatatc acactcccat gcagaataaa
     1441 acaaattgta aacatgtggc aggaagtagg aaaagcaatg tatgcccctc ccatcgaagg
     1501 acaaattaga tgctcatcaa atattacagg gctgctatta acaagagatg gtggtaatag
     1561 cagcaacaac accgagatct tcagacctgg aggaggagat atgagggaca attggagaag
     1621 tgaattatat aaatataaag tagtaaaaat tgaaccatta ggagtagcac ccaccagggc
     1681 aaagagaaga gtggtgcaga gagaaaaaag agcagtggga ctaggagctt tgttccttgg
     1741 gttcttggga gcagcaggaa gcactatggg cgcacggtca atgacgctga cggtacaggc
     1801 cagacaatta ttgtctggta tagtgcaaca gcagaacaat ttgctgaggg ctattgaggc
     1861 gcaacagcat ctgttgcaac tcacagtctg gggcatcaag cagctccagg caagagtcct
     1921 ggctgtggaa agatacctaa gggatcaaca gctcctggag atttggggtt gctctggaaa
     1981 actcatttgc accactactg tgccttggaa tgctagttgg agtaataaat ctctgaatca
     2041 gatttgggat aacatgacct ggatggagtg ggaaagagaa attgacaatt acacaagctt
     2101 aatatacacc ttaattgagg aatcgcaaaa ccaacaagaa aagaatgaac aagaattatt
     2161 ggaattagat aaatgggcaa gtttgtggaa ttggtttaat ataacaaact ggctgtggta
     2221 tataaaaata ttcataatga tagtaggggg cttggtaggt ttaagaatag ttttttctgt
     2281 actttctata gtgaatagag ttaggcaggg atactcacca ttatcgtttc agacccgcct
     2341 cccagccagg agggaacccg acaggcccga aggaatcgaa gaagaaggtg gagagagaga
     2401 cagagacaga tccggtcgat tagtggatgg attattagca cttatctggg tcgacctgag
     2461 gagcctgtgc cttttcagct accaccgctt gagagactta ctcttgattg taacgaggat
     2521 tgtggaactt ctgggacgca gggggtggga agtcctcaaa tactggtgga atctcctgca
     2581 gtattggagt caggaactaa agaatagtgc tgttagcttg ctcaacgcca cagccatagc
     2641 agtagctgag gggacagata gggttataga agtattacag agagctttta gagctatcct
     2701 tcacatacct agaagaataa gacagggctt cgaaagggct ttgctataaa atgggtggca
     2761 aatggtcaaa acgtagtggg ggaggatggc ctgctgtaag ggaaagaatg agacaagctg
     2821 agccagcagc agatggggtg ggagcagcat ctcgagacct agaaaaacat ggagcaatca
     2881 caagtagcaa tacagcagct aacaatg
//