From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: S. parasanguis fimA, ORF3, and ORF5 genes, complete cds and ORF1,
Date: 29 Dec 92 20:58:52 GMT
Distribution: bionet
Checksum: 23032 8

LOCUS       STRSTRA      3612 bp ds-DNA             BCT       11-DEC-1992
DEFINITION  S. parasanguis fimA, ORF3, and ORF5 genes, complete cds and ORF1,
            3' end.
ACCESSION   M26130
KEYWORDS    fimA gene; fimbrial protein; structural protein.
SOURCE      Streptococcus parasanguis (strain FW213) DNA.
  ORGANISM  Streptococcus parasanguis
            Prokaryotae; Firmicutes; Firmibacteria; Gram-positive cocci;
            Streptococcaceae.
REFERENCE   1  (bases 1 to 3612)
  AUTHORS   Fenno,J.C., LeBlanc,D.J. and Fives-Taylor,P.M.
  TITLE     Nucleotide sequence analysis of a type 1 fimbrial gene of
            Streptococcus sanguis FW213
  JOURNAL   Infect. Immun. 57, 3527-3533 (1989)
  STANDARD  full automatic
COMMENT     [1] reports bases 1162-2780.
               Computer readable copy of sequence [U. of Vermont, Burlington,
            VT 05405] kindly submitted by J.C.Fenno, 18-JUL-1989.
FEATURES             Location/Qualifiers
     CDS             <1..632
                     /standard_name="ORF5"
                     /note="putative"
                     /codon_start=3
                     /translation="ILGPNGAGKSTLIKAMLGLLPHSGRVQLDQKDLSQVLQRVAYVE
                     QKSAIDFHFPITVRECVSLGLYPHLSIFKRKSKEDLKKVENALKLVNLLDLADRQIGQ
                     LSGGQFQRVLIARCLVQEADVIFLDEPFAGIDSVSEDIIMQTLQTLKQEGKTILIVHH
                     DLSKVPAYFDKVLLLHRKLIAFGKTEETFTKENLHAAYGHELFIGGGVG"
     CDS             629..1471
                     /standard_name="ORF1"
                     /citation=[1]
                     /note="putative"
                     /codon_start=1
                     /translation="MITEFIDGLQQFHFLQNALITAIAIGIVAGAVGCFIILRGMSLM
                     GDAISHAVLPGVALSFILGINFFIGAIVFGLLASILITYIKSNSIIKSDTAIGITFSS
                     FLALGVILIGVAKSSTDLFHILFGNILAVQDQDMWMTIGVGVTVLLVICLLFRPLLLT
                     SFDPVLAQSMGVRVKIYHYLLMVLLTLVSVTAMQSVGTILIVAMLITPAATAYLYANS
                     LWSMMLLSSSLGALASILGLFIGYSLNIAVGSCIVLTSAVFFLISFFIAPKQRKNKHA
                     LSSH"
     CDS             1483..2412
                     /gene="fimA"
                     /evidence="EXPERIMENTAL"
                     /citation=[1]
                     /codon_start=1
                     /translation="MKKIASVLALFVALLFGLLACSKGSSSGASGKLKVVTTNSILAD
                     ITKNIAGDKIELHSIVPVGKDPHEYEPLPEDVKKTSQADLIFYNGINLETGGNAWFTK
                     LVKNANKVENKDYFAVSEGVDVIYLEGQNQAGKEDPHAWLNLENGILYAKNIAKQLIA
                     KDPKNKDFYEKNLAAYTEKLSKLDQKAKQAFKNIPEDKKMIVTSEGCFKYFSKAYGVP
                     SAYIWEINTEEEGTPEQIKTLVEKLRQTKVPALFVESSVDERPMKTVAKDTNIPIYAK
                     IFTDSIAKEGEKGDSYYSMMKWNLDKIAEGLSQ"
     CDS             2490..2984
                     /standard_name="ORF3"
                     /evidence="EXPERIMENTAL"
                     /note="codes for 20 kD protein"
                     /codon_start=1
                     /translation="MATFLGNPVTFTGSQLQVGEIAHDFSLITPALEKKSLADFAGKK
                     KVLSIIPSIDTGICSMQTRHFNKTLSDLEDTVVLTVSVDLPFAQGKWCAAEGLDNAIM
                     LSDYYDHSFGKAYGLLINEWHLLARAVLVLDADNKITYVEYLDNINSEPNYDAAIEAV
                     KVLG"
BASE COUNT      996 a    905 c    758 g    953 t
ORIGIN      
        1 gaattcttgg gcccaacgga gctgggaaat caaccctgat caaggccatg ctgggacttc
       61 ttcctcattc aggaagggtc cagcttgatc aaaaagatct cagccaagtt cttcaacgag
      121 tggcctacgt cgaacagaaa tccgctattg atttccactt ccccatcacg gtgcgggagt
      181 gtgtctcact gggtctctat ccccatcttt ctatcttcaa gcgaaaaagc aaagaggacc
      241 tcaaaaaagt ggaaaatgcc ttgaaacttg tcaatcttct tgatctagca gatcgccaga
      301 ttggtcagct ttcgggaggg caattccaac gggtgctgat tgcccgttgc ctggtccaag
      361 aagcggatgt catctttttg gatgagccct tcgcagggat tgactctgtc agcgaagaca
      421 tcatcatgca gaccctccag accttgaaac aagaaggcaa gaccatcctg attgtccatc
      481 acgacctcag caaggtccca gcttattttg acaaggtcct cctccttcac cgcaagctga
      541 tcgcttttgg gaaaacagag gaaaccttta ccaaggagaa tctgcatgca gcctatgggc
      601 atgaactctt tataggaggt ggcgtcggat gattacagaa tttatcgatg gattacagca
      661 attccacttc ttacagaatg ccctgatcac agccattgcc atcggtattg tcgctggagc
      721 tgtcggatgc ttcattattt tgcgaggcat gtctctcatg ggagatgcca tctcgcacgc
      781 agtccttcca ggggtggccc tgtcctttat ccttggcatc aatttcttta ttggcgccat
      841 tgtctttgga cttctagctt ccatccttat cacctatatc aagagcaact ccatcatcaa
      901 gagcgacaca gcgataggga ttaccttttc ttctttcctc gccttaggag tcatcctgat
      961 tggagtcgca aaaagttcca ccgacctctt ccacatcctc tttgggaata tcttggccgt
     1021 gcaagaccag gatatgtgga tgaccatcgg tgtcggggta accgtattac tggtgatttg
     1081 cctgctcttt cgacccttac tgctcacatc ttttgatccc gttttggctc aatccatggg
     1141 cgtccgggtc aagatctatc actacctgct catggtgctc ttgaccttgg tttctgtcac
     1201 tgctatgcag agtgttggga ccattctcat cgtcgccatg ctcatcacac ccgctgcgac
     1261 ggcctatctc tatgccaaca gcctctggtc catgatgctt ttgtcctcta gcttaggtgc
     1321 tcttgcatcc attctaggac tctttattgg ctatagctta aacatcgccg ttgggtcttg
     1381 tattgtcctc acttctgccg tcttctttct catcagcttt tttatcgctc ctaagcagag
     1441 aaagaacaag cacgctcttt catctcatta aaggagaaac acatgaaaaa aatcgcttct
     1501 gtcctcgccc tctttgtggc actcttattc ggtcttctag cctgtagcaa ggggtcttct
     1561 tctggagctt ctggtaaatt gaaagtggtc accaccaatt cgatccttgc agatatcacc
     1621 aaaaatattg ctggggataa gatcgagctc cacagtatcg ttcccgtcgg caaagatccc
     1681 cacgaatacg aaccgctacc agaagatgtc aaaaaaactt cacaagcaga cctgatcttc
     1741 tacaacggga tcaaccttga aactggtggc aatgcttggt tcactaaatt ggtcaaaaat
     1801 gccaataaag tagaaaacaa ggactatttc gcagtgagcg agggagtcga cgtcatctac
     1861 ctagaaggcc aaaaccaagc gggaaaagaa gacccacacg cttggctcaa tctcgaaaac
     1921 gggatcctct acgctaaaaa cattgccaaa caattgatcg ccaaagatcc gaaaaacaag
     1981 gacttctacg aaaaaaatct agcagcctac actgaaaaac tcagcaagct agaccaaaaa
     2041 gccaaacaag cattcaagaa tatcccagaa gacaagaaga tgatcgtaac cagcgaaggt
     2101 tgcttcaagt acttctccaa agcctatggc gtcccatctg cctatatctg ggaaatcaat
     2161 accgaagaag aagggacacc cgaacaaatc aaaacactgg tagagaaatt gcgtcaaacc
     2221 aaggtgccgg ccctctttgt tgaatccagc gttgatgagc gtcccatgaa aactgtagct
     2281 aaagatacca atattccgat ctatgcaaag atcttcactg attccattgc caaagaagga
     2341 gaaaagggcg atagctacta cagcatgatg aagtggaact tagacaagat cgcagaagga
     2401 ttgagtcagt aacccttcag atttctaaac aaatcagtgg cccctcctcc ggtattgagg
     2461 tacaataaaa acaaaaaagg agtcttttta tggcaacatt tttaggaaac cctgttacct
     2521 ttaccggatc tcaacttcaa gtaggggaaa ttgcccatga tttttcattg atcactccag
     2581 ctctggagaa gaaatcttta gctgattttg ctggcaagaa aaaagtcctc agcatcatcc
     2641 catccatcga cacagggatc tgttcgatgc aaacacgtca cttcaacaag accttatcgg
     2701 acttggaaga cactgtcgtc ttgacggtct ctgtcgacct tccttttgct caaggtaaat
     2761 ggtgcgctgc tgaaggactc gacaatgcca tcatgctctc agactactac gaccattcct
     2821 tcggaaaagc ctacggcctc ttgatcaatg aatggcactt gcttgcgcgc gctgtcttgg
     2881 tcttagatgc agataacaag atcacttacg ttgaatacct agacaacatc aacagcgaac
     2941 caaattacga cgctgcaatc gaagccgtca aagtacttgg ataaacgaaa aaagaggtct
     3001 gcgacctctt ttctatatct acaaaatctg ttcagaacct ttccttaagt gagtacggac
     3061 gtcagcgaac ttctaggaag ttccatgact tagcaagata caaagggtgt tcgcggataa
     3121 agtcaaaata ggaagtttga cacagaatct tttgattcta ggaaaactta tctttttgaa
     3181 acgatccgca gcccgtgttc aattagtttt gaacctaacg tttcaaaact cccgagtact
     3241 tgaaacaaca atgtttcaag cacttttctc acagcggaaa ggctcatcac ctgatagatc
     3301 agctctaaga acttaactgt tttaacttct tttaagaatc tcttaggcta ttttatgtaa
     3361 aataacagtt ctttcgttgc tataaaatcc gatggagccc attctggagg aggacccgcc
     3421 agcgtaagcg agggatgcct ctgaggaaac ttcgcacgcg tcttgctact tgttgcttgt
     3481 agctctggcc tccttgtgca aagactcctt ttcgactcca gtatccctcg ataccgcggt
     3541 cattcttcgg agctagatag cgaacacctt gctgatagag gacctgcttg cgaaaggctg
     3601 ggtcccaagc tt
//