From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Zebrafish retinoic acid receptor gamma-2 (RAR-gamma) mRNA, partial
Date: 22 Dec 92 22:57:58 GMT
Distribution: bionet
Checksum: 40081 4

LOCUS       ZEFRARGII    1101 bp ss-mRNA            VRT       30-NOV-1992
DEFINITION  Zebrafish retinoic acid receptor gamma-2 (RAR-gamma) mRNA, partial
            cds.
ACCESSION   L03400
KEYWORDS    retinoic acid receptor-gamma;
            retinoic acid receptor-gamma-2-isoform.
SOURCE      Brachydanio rerio gastrula (6 hours post fertilization) embryo cDNA
            to mRNA.
  ORGANISM  Brachydanio rerio
            Eukaryota; Animalia; Chordata; Vertebrata; Osteichthyes;
            Actinopterygii; Cypriniformes; Cyprinoidei; Cyprinidae.
REFERENCE   1  (bases 1 to 1101)
  AUTHORS   Stachel,S.E. and Kushner,P.
  TITLE     The molecular characterization of three zebrafish retinoic acid
            receptor genes suggests the retinoic acid pathway functions in
            embryonic hindbrain development
  JOURNAL   Unpublished (1993)
  STANDARD  full automatic
REFERENCE   2  (bases 1 to 1101)
  AUTHORS   Stachel,S.E.
  TITLE     Retinoic acid reprograms RAR expression and shows anteroposterior
            specification occurs in the pre-gastrula zebrafish
  JOURNAL   Unpublished (1993)
  STANDARD  full automatic
FEATURES             Location/Qualifiers
     primer_bind     replace(1..16,"")
                     /note="'region corresponds to 5' PCR primer'"
     misc_feature    1..144
                     /label=A-domain
                     /note="'type 2 isoform'"
     misc_feature    229..426
                     /function="'DNA binding'"
                     /label=C-domain
     misc_feature    567..1101
                     /function="'ligand binding'"
                     /label=E-domain
                     /note="'truncated sequence'"
     primer_bind     replace(1081..1101,"")
                     /note="'region corresponds to 3' PCR primer'"
     CDS             1..1101
                     /gene="RAR gamma"
                     /citation=[1]
                     /partial
                     /product="retinoic acid receptor gamma-2"
                     /codon_start=1
                     /translation="MFDCMEALGMGPRQLYDVTDRGACMLRKASPFYAGLDPFAWTGT
                     ASVRSVETQSTSSEEMVPSSPSPPPPPRVYKPCFVCQDKSSGYHYGVSSCEGCKGFFR
                     RSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKDVKD
                     EVIPPESYELSGELEELVNKVSKAHQETFPSLCQLGKYTTNSSSDHRIQLDLGLWDKF
                     SELSTKCIIKIVEFAKALPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDTMTF
                     SDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEE
                     PERVDRLQEPLLEALKIYARRRRPNKPHMFPKI"
BASE COUNT      267 a    312 c    284 g    238 t
ORIGIN      
        1 atgttcgact gcatggaagc tctgggcatg ggtccccgcc aactgtacga tgtcaccgac
       61 cggggagcat gcatgcttcg gaaggcgagt cctttctatg ctggactgga cccttttgct
      121 tggaccggga cagccagcgt acgctcggtg gagactcaga gcaccagttc ggaggagatg
      181 gtgcccagtt ccccttcccc gccacctcca ccgcgtgttt acaaaccctg cttcgtctgc
      241 caggacaagt cttctgggta ccactatggt gtcagttctt gcgagggctg caagggtttc
      301 ttccgtcgca gtattcagaa gaacatggtg tacacctgcc accgtgacaa gaactgccag
      361 atcaacaagg tcacgcgcaa ccgttgccag tactgccggc tgcagaagtg cttcgaggtt
      421 ggcatgtcca aggaagctgt gcgcaacgat cgaaataaga agaagaaaga cgtgaaggat
      481 gaggtcattc cgccagagag ctatgagctg agtggggaac tggaggagct ggtcaacaaa
      541 gtgagcaaag cacatcaaga gaccttccct tcactctgcc agctgggaaa atacaccaca
      601 aactccagct cggaccacag gattcagcta gacctgggcc tatgggacaa attcagtgag
      661 ctttccacca agtgcatcat taaaattgtg gagtttgcca aagccctccc aggcttcacc
      721 accctcacca tcgcagatca aatcaccctt ctcaaatctg cctgcttgga cattctaatg
      781 ctgcgaatct gtacacgata cacaccggag caggacacaa tgaccttttc ggatggacta
      841 accctcaacc ggactcagat gcataatgca ggtttcggac cgctcactga cctggtgttt
      901 gccttcgctg gtcagcttct gcctcttgag atggatgata cggagactgg cctccttagt
      961 gccatctgcc tcatatgtgg agaccgaatg gatcttgagg agccagagcg tgtcgatcgt
     1021 ctgcaggagc ccttgctgga agctctgaag atttatgcac gacgccgccg ccccaacaaa
     1081 ccccacatgt tccccaaaat c
//