From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Chicken anemia virus replicative form DNA, complete genome.
Date: 9 Apr 92 10:02:31 GMT
Distribution: bionet
Checksum: 51784     6

LOCUS       CAE26P4      2298 bp ss-DNA   Circular  VRL       09-APR-1992
DEFINITION  Chicken anemia virus replicative form DNA, complete genome.
ACCESSION   D10068 D01218
KEYWORDS    .
SOURCE      Chicken anemia virus (26P4 isolate) DNA, isolated from chicken
            liver, propagated in MDCC-MSB1 cells, clone pCA3.
  ORGANISM  Chicken anemia virus
            Viridae; ss-DNA viruses.
REFERENCE   1  (bases 1 to 2298)
  AUTHORS   Claessens,J.A., Schrier,C.C., Mockett,A., Jagt,E.H. and
            Sondermeijer,P.J.
  TITLE     Molecular cloning and sequence analysis of the genome of chicken
            anaemia agent
  JOURNAL   J. Gen. Virol. 72, 2003-2006 (1991)
  STANDARD  full staff_review
COMMENT     Data kindly submitted in computer readable form by:
            Takehiro Kusakabe
            Department of Zoology
            Faculty of Science, Kyoto University
            Oiwake-cho, Kitashirakawa
            Sakyo-ku, Kyoto 606
            Japan
            Phone:  075-753-4081
            Fax:    075-751-6149
FEATURES             Location/Qualifiers
     CDS             join(2102..2298,1..454)
                     /product="ORF3"
                     /codon_start=1
                     /translation="MHGNGGQPAAGGSESALSREGQPGPSGAAQGQVISNERSPRRYS
                     TRTINGVQATNKFTAVGNPSLQRDPDWYRWNYNHSIAVWLRECSRSHAKICNCGQFRK
                     HWFQECAGLEDRSTQASLEEAILRPLRVQGKRAKRKLDYHYSQPTPNRKKVYKTVRWQ
                     DELADREADFTPSEEDGGTTSSDFDGDINFDIGGDSGIVDELLGRPFTTPAPVRIV"
     CDS             277..1626
                     /product="ORF1"
                     /codon_start=1
                     /translation="MARRARRPRGRFYAFRRGRWHHLKRLRRRYKFRHRRRQRYRRRA
                     FRKAFHNPRPGTYSVRLPNPQSTMTIRFQGVIFLTEGLILPKNSTAGGYADHMYGARV
                     AKISVNLKEFLLASMNLTYVSKIGGPIAGELIADGSKSQAAENWPNCWLPLDNNMPSA
                     TPSAWWRWALMMMQPTDSCRFFNHPKQMTLQDMGRMFGGWHLFRHIETRFQLLATKNE
                     GSFSPVASLLSQGEYLTRRDDVKYSSDHQNRWRKGGQPMTGGIAYATGKMRPDEQQYP
                     AMPPDPPIITTTTAQGTQVRCMNSTQAWWSWDTYMSFATLTALGAQWSFPPGQRSVSR
                     RSFNHHKARGAGDPKGQRWHTLVPLGTETITDSYMSAPASELDTNFFTLYVAQGTNKS
                     QQYKFGTATYALKEPVMKSDAWAVVRVQSVWQLGNRQRPYPWDVNWANSTMYWETQP"
     variation       1058
                     /note="replace(1058,'c')"
     variation       1586
                     /note="replace(1586,'g')"
     stem_loop       1627..1825
                     /note="hairpin-region"
     polyA_signal    1711..1716
     CDS             1800..2201
                     /product="ORF2"
                     /codon_start=1
                     /translation="MDESRDFARDSSKAGGRRPPGGPPPTSGACTGGYVIRTGGYVTK
                     RRYRTGGYVTRTGGYVTANQKLPRCESDVSKMGGASLSIYCAHIPVGSRYTQGGPGGC
                     TGTADNRPLGAVNRRLAERGNLGPAEPRRGK"
     repeat_region   1888..1980
                     /rpt_type=direct
                     /rpt_unit=1888..1905
                     /rpt_unit=1909..1926
                     /rpt_unit=1942..1959
                     /rpt_unit=1963..1980
BASE COUNT      587 a    658 c    640 g    413 t
ORIGIN
        1 gagagatccg gattggtatc gctggaatta caatcactct atcgctgtgt ggctgcgcga
       61 atgctcgcgc tcccacgcta agatctgcaa ctgcggacag ttcagaaagc actggtttca
      121 agaatgcgcc ggacttgagg accgatcaac ccaagcctcc ctcgaagaag cgatcctgcg
      181 acccctccga gtacagggta agcgagctaa aagaaaactt gattaccact actcccagcc
      241 gaccccgaac cgcaagaagg tgtataagac tgtaagatgg caagacgagc tcgcagaccg
      301 agaggccgat tttacgcctt cagaagagga cggtggcacc acctcaagcg acttcgacgg
      361 agatataaat ttcgacatcg gaggagacag cggtatcgta gacgagcttt taggaaggcc
      421 tttcacaacc cccgccccgg tacgtatagt gtgaggctgc cgaaccccca atctactatg
      481 actatccgat tccaaggagt catctttctc acggaaggac tcattctgcc taaaaacagc
      541 acagcggggg gctatgcaga ccacatgtac ggggcgagag tcgccaagat ctctgtaaac
      601 ctgaaagagt tcctgctagc gtcaatgaac ctgacatacg tgagcaaaat cggaggaccc
      661 atcgccggtg agttgattgc ggacgggtct aaatcacaag ccgcggagaa ttggcctaat
      721 tgctggctgc cgctagataa taacatgccc tccgcgacac catcggcatg gtggagatgg
      781 gccttaatga tgatgcagcc cacggactct tgccggttct ttaatcaccc taagcagatg
      841 accctgcaag acatgggtcg catgtttggg ggctggcacc tgttccgaca cattgaaacc
      901 cgctttcagc tccttgccac taagaatgag ggatccttca gccccgtggc gagtcttctc
      961 tcccagggag agtaccttac gcgtcgggac gatgttaagt acagcagcga tcaccagaac
     1021 cggtggcgaa aaggcggaca accgatgacg gggggtattg cttatgcgac cgggaaaatg
     1081 agacccgacg agcaacagta ccctgctatg cccccagacc ccccgatcat caccactact
     1141 acagcccaag gcacgcaagt ccgctgcatg aatagcacgc aagcttggtg gtcatgggac
     1201 acatatatga gctttgcaac actcacagca ctcggtgcac aatggtcttt tcctccaggg
     1261 caacgttcag tttctagacg gtccttcaac caccacaagg cgagaggagc cggggacccc
     1321 aaaggccaga gatggcacac gctggtgccc ctgggcacgg agaccatcac cgacagctac
     1381 atgagtgcac ccgcatcaga gctggacact aatttcttta cgctttacgt agcgcaaggc
     1441 acaaataagt cgcagcagta caagttcggc acagctacat acgcgctaaa ggagccggta
     1501 atgaaaagcg atgcatgggc agtggtacgc gtccagtcgg tctggcagct gggtaacagg
     1561 cagaggccat acccatggga cgtcaactgg gccaacagca ccatgtactg ggagacgcag
     1621 ccctgaaaag gggggggggc taaagccccc cccccttgaa cccccccctg ggggggattc
     1681 ccccccagcc ccccccttta aatagcactc aataaacgca gcaaatggct taatcgcaca
     1741 atcgcattcc gagtggttac tattccatca ccattctagc ctgtacacag aaagtcaaga
     1801 tggacgaatc gcgagacttc gctcgcgatt cgtcgaaggc ggggggccgg aggccccccg
     1861 gtggcccccc tccaacgagt ggagcatgta caggggggta cgtcatccgt acaggggggt
     1921 acgtcacaaa gaggcgttac cgtacagggg ggtacgtcac gcgtacaggg gggtacgtca
     1981 cagccaatca gaagctgcca cgttgcgaaa gtgacgtttc gaaaatgggc ggcgcgagcc
     2041 tctctatata ttgcgcgcac ataccggtcg gcagtaggta tacgcaaggc ggtccgggtg
     2101 gatgcacggg aacggcggac aaccggccgc tgggggcagt gaatcggcgc ttagccgaga
     2161 ggggcaacct gggcccagcg gagccgcgca ggggcaagta atttcaaatg aacgctctcc
     2221 aagaagatac tccacccgga ccatcaacgg tgttcaggcc accaacaagt tcacggccgt
     2281 tggaaacccc tcactgca
//