From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Influenza C/Ann Arbor/1/50, nonstructural protein (NS) RNA (seg 7),
Date: 28 Dec 92 21:42:58 GMT
Distribution: bionet
Checksum: 52125 4

LOCUS       FLCNSAA50     934 bp ss-RNA             VRL       02-DEC-1992
DEFINITION  Influenza C/Ann Arbor/1/50, nonstructural protein (NS) RNA (seg 7),
            complete cds.
ACCESSION   D00029 N00029
KEYWORDS    NS.
SOURCE      Influenza virus type C (individual_isolate C/Ann Arbor/1/50) RNA.
  ORGANISM  Influenza virus type C
            Viridae; ss-RNA enveloped viruses; Negative strand RNA viruses;
            Orthomyxoviridae.
REFERENCE   1  (bases 1 to 934)
  AUTHORS   Palese,P., Fitch,W.M., Nakada,S. and Buonagurio,D.A.
  TITLE     Epidemiology of influenza C virus in man: Multiple evolutionary
            lineages and low rate of change
  JOURNAL   Virology 153, 12-21 (1986)
  STANDARD  full automatic
COMMENT     The nucleotide sequences of nonstructural protein (NS) genes of
            human influenza C viruses isolated between 1947 and 1983 were
            determined and compared. In [1], the first 40 nucleotides at the 5'
            end of the plus sense cDNA could not be determinded by direct RNA
            sequencing using the dideoxy chain termination method. The position
            of the initiation codon for NS1 and NS2 proteins is indicated
            putatively by comparing with the sequence of the previously
            reported C/CAL/78 virus NS gene.
FEATURES             Location/Qualifiers
     exon            <27..213
                     /note="NS2 peptide"
     intron          214..526
                     /note="NS2 intron"
     exon            527..>705
                     /note="NS2 peptide"
     CDS             join(27..213,527..705)
                     /note="NS2 peptide"
                     /codon_start=1
                     /translation="XXXXXVKSTNLMAFVATKMLERQEDLDTCTEMQVEKMKTSTKAR
                     LKTESSFAPRTWEDAIKDEILRRSVDTSSLDKWPELKQELENVSDALKADSLWLPMKS
                     LSLYSKVSNQEPSSIPIGK"
     CDS             27..887
                     /note="NS1 peptide"
                     /codon_start=1
                     /translation="XXXXXVKSTNLMAFVATKMLERQEDLDTCTEMQVEKMKTSTKAR
                     LKTESSFAPRTWEDAIKDGELLFNGTILQAESPTMTPASVEMKGKKFPIDFAPSNIAP
                     IGQNPIYLSPCIPNFDGNVWEATMYHHRGATLTKTMNCNCFQRTIWCHPNPSRMRLSY
                     AFVLYCRNTKKICGYLIARQVAGIETGIRKCFRCIKSGFVMATDEISLTILQSIKSGA
                     QLDPYWEMKHQILTRLKLICSRLEKLDLNLSKAVLGIQNSEDLILIIYNRDVCKTTIL
                     MIKSLCNSLI"
BASE COUNT      314 a    164 c    169 g    247 t     40 others
ORIGIN      3'end of viral RNA
        1 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn agtcaaatca acaaatttaa
       61 tggcatttgt agccacaaaa atgttagaga gacaagaaga tttagacaca tgcactgaaa
      121 tgcaagtaga aaaaatgaaa acgtcaacaa aagctaggtt gaaaacagaa tcttcttttg
      181 cacctagaac atgggaagat gcaataaaag atggtgagct tctattcaac gggacgattc
      241 tgcaagcaga gtctcctaca atgacgccag cgtccgtaga aatgaagggg aagaaatttc
      301 ctattgattt tgctccaagc aacatagcac caattgggca aaatccaata tatttgtcac
      361 catgtattcc taactttgat ggaaacgtct gggaagcaac gatgtatcat catcgtggag
      421 caactttgac aaagacaatg aattgcaact gttttcaaag aacaatttgg tgccatccaa
      481 atccttcacg tatgagattg agctatgcat ttgttttgta ttgcagaaat actaagaaga
      541 tctgtggata cctcatcgct agacaagtgg ccggaattga aacaggaatt agaaaatgtt
      601 tcagatgcat taaaagcgga ttcgttatgg ctaccgatga aatctctctc actatactcc
      661 aaagtatcaa atcaggagcc cagctcgatc cctattggga aatgaaacac cagatattga
      721 caagactgaa gcttatatgc tctcgcttag agaagctgga ccttaacctg agcaaagcag
      781 tcttaggaat ccaaaattct gaagatctta ttttgatcat atataacaga gatgtttgta
      841 aaaccactat attaatgata aaatctttgt gtaattcact tatataattg ttttaagttg
      901 ttattccaaa gttaaaaatc cccttgctcc tgct
//