From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: C.trachomatis (Da/TW-448) omp1 gene for major outer membrane
Date: 21 Dec 92 20:10:21 GMT
Distribution: bionet
Checksum: 21630 4

LOCUS       CHTOMP1C     1325 bp ds-DNA             BCT       17-NOV-1992
DEFINITION  C.trachomatis (Da/TW-448) omp1 gene for major outer membrane
            protein
ACCESSION   X62921
KEYWORDS    antigenic epitope bearing;
            elementary body structural rigidity maintainance;
            major outer membrane protein; omp1 gene; porin;
            transmembrane protein.
SOURCE      Chlamydia trachomatis DNA.
  ORGANISM  Chlamydia trachomatis
            Prokaryotae; Eubacteria; Chlamydiales; Chlamydiaceae.
REFERENCE   1  (bases 1 to 1325)
  AUTHORS   Sayada,C., Denamur,E. and Elion,J.
  TITLE     Complete sequence of the major outer membrane protein-encoding gene
            of Chlamydia trachomatis serovar Da*
  JOURNAL   Gene 120, 129-130 (1992)
  STANDARD  full automatic
COMMENT     *source: strain=ssp. SEROVAR D, strain: Da/TW-448;
               From EMBL    entry CTOMP1C;  dated 10-NOV-1992.
FEATURES             Location/Qualifiers
     RBS             107..112
     sig_peptide     117..182
     mat_peptide     183..1295
                     /product="major outer membraneprotein (MOMP)"
                     /gene="omp1"
     misc_feature    372..431
                     /note="variable domain I"
     misc_feature    597..659
                     /note="variable domain II"
     misc_feature    849..890
                     /note="variable domain III"
     misc_feature    1041..1130
                     /note="variable domain IV"
     CDS             117..1298
                     /gene="omp1"
                     /product="major outer membraneprotein (MOMP)"
                     /codon_start=1
                     /translation="MKKLLKSVLVFAALSSASSLQALPVGNPAEPSLMIDGILWEGFG
                     GDPCDPCTTWCDAISMRMGYYGDFVFDRVLETDVNKEFHMGAKPTTDTGNSAAPSTLT
                     ARENPAYGRHMQDAEMFTNAACMALNIWDRFDVFCTLGATSGYLKGNSASFNLVGLFG
                     DNENQKTVKAESVPNMSFDQSVVELYTDTTFAWSVGARAALWECGCATLGASFQYAQS
                     KPKVEELNVLCNAAEFTINKPKGYVGKEFPLDLTAGTDAATGTKDASIDYHEWQASLA
                     LSYRLNMFTPYIGVKWSRASFDADTIRIAQPKSATAIFDTTTLNPTIAGAGDVKTGTE
                     GQLGDTMQIVSLQLNKMKSRKSCGIAVGTTIVDADKYAVTVETRLIDERAAHVNAQFR
                     F"
BASE COUNT      383 a    263 c    303 g    376 t
ORIGIN      
        1 ttcctcaggc cattaattgc tacaggacat cttgtctggc tttaactagg acgcagtgcc
       61 gccagaaaaa gatagcgagc acaaagagag ctaattatac aatcttagag gtaagaatga
      121 aaaaactctt gaaatcggta ttagtatttg ccgctttgag ttctgcttcc tccttgcaag
      181 ctctgcctgt ggggaatcct gctgaaccaa gccttatgat cgacggaatt ctgtgggaag
      241 gtttcggtgg agatccttgc gatccttgca ccacttggtg tgacgctatc agcatgcgta
      301 tgggttacta tggagacttt gttttcgacc gtgttttgga aacagatgtg aataaagaat
      361 tccacatggg tgccaagcct acaactgata caggcaatag tgcagctcca tccactctta
      421 cagcaagaga gaatcctgct tacggccgac atatgcagga tgctgagatg tttacaaatg
      481 ccgcttgcat ggcattgaat atttgggatc gttttgatgt attctgtaca ttaggagcca
      541 ccagtggata tcttaaagga aactctgctt ctttcaattt agttggattg tttggagata
      601 atgaaaatca aaaaacggtc aaagcggagt ctgtaccaaa tatgagcttt gatcaatctg
      661 ttgttgagtt gtatacagat actacttttg cgtggagcgt cggcgctcgc gcagctttgt
      721 gggaatgtgg atgtgcaact ttaggagctt cattccaata tgctcaatct aaacctaaag
      781 tagaagaatt aaacgttctc tgcaatgcag cagagtttac tattaataaa cctaaagggt
      841 atgtaggtaa ggagtttcct cttgatctta cagcaggaac agatgctgcg acaggaacta
      901 aggatgcctc tattgattac catgaatggc aagcaagttt agctctctct tacagactga
      961 atatgttcac tccctacatt ggagttaaat ggtctcgagc aagctttgat gccgatacga
     1021 ttcgtatagc ccagccaaaa tcagctacag ctatctttga tactaccacg cttaacccaa
     1081 ctattgctgg agctggcgat gtgaaaactg gcacagaggg tcagctcgga gacacaatgc
     1141 aaatcgtttc cttgcaattg aacaagatga aatctagaaa atcttgcggt attgcagtag
     1201 gaacaactat tgtggatgca gacaaatacg cagttacagt tgagactcgc ttgatcgatg
     1261 agagagcagc tcacgtaaat gcacaattcc gcttctaata attgtataat tatattagga
     1321 tcttt
//