From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Human papillomavirus type 41
Date: 5 Jan 93 06:48:32 GMT
Distribution: bionet
Checksum: 15971 16

LOCUS       PPHP41CG     7614 bp ds-DNA             VRL       04-JAN-1993
DEFINITION  Human papillomavirus type 41
ACCESSION   X56147
KEYWORDS    papillomavirus.
SOURCE      Human papillomavirus type 41 DNA.
  ORGANISM  Human papillomavirus type 41
            Viridae; ds-DNA nonenveloped viruses; Papovaviridae.
REFERENCE   1  (bases 1 to 7614)
  AUTHORS   De Villiers,E.M., Hirsch-Behnam,A. and Hirt,L.
  TITLE     Nucleotide sequence of human papillomavirus (HPV) type 41: an
            unusual HPV type without a typical E2 binding site consensus
            sequence
  JOURNAL   Virus Res. 18, 179-190 (1990)
  STANDARD  full automatic
COMMENT     *source: tissue=facial wart; *source: is_proviral=N;
               From EMBL    entry PAP41CG;  dated 14-JUN-1991.
FEATURES             Location/Qualifiers
     CDS             <3341..3646
                     /gene="ORF E4"
                     /codon_start=1
                     /translation="LLPTAPPRGREPQRYYDRRGRDDAETRKRGSRSPQPLSEDEELT
                     DADPPRRPNAGPRRRLFLEETEDRLTSLLESLTKDIESDIEHFERKLRVLLQQKDTI"
     CDS             102..572
                     /gene="ORF E6"
                     /note="frame starts at 3"
                     /codon_start=1
                     /translation="MASTSGVGSVGPASCCETQKPHTIRELCLAQQITYPCIQLCCHY
                     CYKILSVLDIYAFDQSCLYLSWGEGGPTGICSQCTRVLARLEFTARHEVSCAASRLPH
                     FIGQSLSDLEVRCVRCLALLQSVEKDYILREDLSVHRIGGIWRGTCVRCMVGLY"
     CDS             644..988
                     /gene="ORF E7"
                     /note="frame starts at 518"
                     /codon_start=1
                     /translation="MRGNSVDLQEIVLVQQGEVPENAAVHSGEHSDDEGESEEEEREQ
                     VQQVPTPRRTLYLVESQCPFCQAIIRFVCVASNTGIRNLQALLVNSHLDLACHACVEQ
                     NGVQGLRHRQWQ"
     CDS             951..2795
                     /gene="ORF E1"
                     /note="frame starts at 877"
                     /codon_start=1
                     /translation="MASRVSDTGNGNENKENEGTVASDHSEARCSYILFEAECSDGGD
                     DEESMEDSLVEDLVDDASVHQGNSLSLFHAQTVEEYEGEIQSLKRKFILSPLHRDVAE
                     LSPRLAGVSLEENRGKKARKSLFHDDSGIDSSAVEVSQLSSTPSAPGPDIRLPKPSDI
                     DLEPLFQSRQRCTHMYSKFKAVYGVSFTDITRPFKSDKTTSQHWVVAAYYLAFDSEIS
                     AMEVLLRQQCQFLYIDNNDGIILFFLEYNVQKSRTTVYNWFTANFHYNENRMLANPPR
                     TRNMPAALFFYHRFMGTGGIKHGAMPEIIVNQCVVSNQQTDTFELSRMVQWALDNDLQ
                     DEHMLALEYALLAESDGNARAFLKQNNQPMIVKNCSIMVRHYKTALVAKMSISQYVNK
                     RCLDHGEADENSWRGIVHFLRYQGQEFLPFMCKMHNFLHHRPKKSTLVLCGPSDTGKS
                     YFANGLNKFLDGHVLSFVSNGSHFWLSPLRGARCCLIDDATLTFWRYADQNMRALLDG
                     YEISIDAKHRNPMQTRAPPLIITTNEDIMRLDEFKYLQTRTMYVYFNKPFPLKGNGQP
                     LYYIDGYTWNSFFRKFWRHLNLKDPEDESDGETPGTIRLYTRADTDTI"
     CDS             979..1212
                     /gene="ORF X"
                     /note="frame starts at 922"
                     /codon_start=1
                     /translation="MAMKTKRMKVQWHLIILRRVVAIYYLRLNVAMAGTMRKVWRIAW
                     WKTLWMMLLCIREIPCRCFMPKLSRNTRERSRA"
     CDS             2728..3891
                     /gene="ORF E2"
                     /note="frame starts at 2716"
                     /codon_start=1
                     /translation="MSQMERLLERLDYIQEQILTLYEKDSVDLEDHIRLWNLLRRENA
                     IWYVLRQEGHARVGGRAVPAMTVSEANAKFAIEMQIKLESLKASPYAAEGWSLQETTK
                     ERYLAEPSRTFKKLGQPVTLMFDNDPENLTEVVLWKWVYYITPTDEWYKARGGIDDTG
                     IYYIDHESVKMYYVRFDMEAENFSETGTVTYRLGSALVNVPEPVTVTDSSSTRERTPK
                     VLRPQGSRRRRNEETGEPVAPAPKRRRGAYGRRSSPKAQRRTAASPVSRGNGGSSDFT
                     SGESDEGHRVRHRALRKKTAGVAPAEGHYLVGAKGPVNSLRCLRYKWKNKYSGDIMYL
                     GTTFTWTESDGTERCGSGRFFCAFSNETKREKFLKSVKIPKNIGLFRAHAEKL"
     CDS             2832..3050
                     /gene="ORF Y"
                     /note="frame starts at 2811"
                     /codon_start=1
                     /translation="MESAKEGKCNLVCTQTGRTRKGRRQSGAGNDGIGSQCQIRNRNA
                     DKARITKGQSLCGRGLVIARNHQGTVLG"
     CDS             3806..4042
                     /gene="ORF E5"
                     /note="frame starts at 3722"
                     /codon_start=1
                     /translation="MKQKEKSSSNLSRFLKTLGCFAHTQKSCDLCIIKQCLLGKGLNA
                     LILNNCIRHAKQRGAIVHPMLLNAMSKLHLLIVY"
     CDS             3910..5574
                     /gene="ORF L2"
                     /note="frame starts at 3907"
                     /codon_start=1
                     /translation="MLARQRVKRANPEQLYKTCKATGGDCPPDVIKRYEQTTPADSIL
                     KYGSVGVFFGGLGIGTGRGGGGTVLGAGAVGGRPSISSGAIGPRDILPIESGGPSLAE
                     EIPLLPMAPRVPRPTDPFRPSVLEEPFIIRPPERPNILHEQRFPTDAAPFDNGNTEIT
                     TIPSQYDVSGGGVDIQIIELPSVNDPGPSVVTRTQYNNPTFEVEVSTDISGETSSTDN
                     IIVGAESGGTSVGDNAELIPLLDISRGDTIDTTILAPGEEETAFVTSTPERVPIQERL
                     PIRPYGRQYQQVRVTDPEFLDSAAVLVSLENPVFDADITLTFEDDLQQALRSDTDLRD
                     VRRLSRPYYQRRTTGLRVSRLGQRRGTISTRSGVQVGSAAHFFQDISPIGQAIEPIDA
                     IELDVLGEQSGEGTIVRGDPTPSIEQDIGLTALGDNIENELQEIDLLTADGEEDQEGR
                     DLQLVFSTGNDEVVDIMTIPIRAGGDDRPSVFIFSDDGTHIVYPTSTTATTPLVPAQP
                     SDVPYIVVDLYSGSMDYDIHPSLLRRKRKKRKRVYFSDGRVASRPK"
     CDS             5336..7087
                     /gene="ORF L1"
                     /note="frame starts at 5312"
                     /codon_start=1
                     /translation="MTGLQYLFLAMMALTLSILLAQQPPPHSCLHSPAMCPTLLLTCI
                     VEVWIMIYILACCAGNVKNANVFIFQMAVWLPGPNRFYLPPQPIQRTLNTEEYVRRTS
                     TFLHAATDRLLTVGHPFYNITNADGKEVVPKVSSNQFRAFRVRFPNPNTFAFCDKSLF
                     NPDKERLVWGIRGIEVSRGQPLGIGVTGNPFFNKFDDAENPYNGINKNNITDQGSDSR
                     LSIAFDPKQTQLLIVGAKPAKGEYWDVAATCENPPLTKADDKCPALELKSSYIEDADM
                     SDIGLGNLNFSTLQRNKSDAPLDIVDSICKYPDYLQMIEELYGDHMFFYVRREALYAR
                     HIMQHAGKMDAEQFPTSLYIDSSVEGEKLNSLQRTDRYFMTPSGSLVATEQQLFNRPF
                     WLQRSQGHNNGILWHNEAFVTLVDTTRGTNFTISVPEGDASSYNNSKFFEFLRHTEEF
                     QLAFILQLCKVDLTPENLAYIHTMDPSIIEDWHLAVTSPPNSVLEDHYRYILSIATKC
                     PSKDADDTSTDPYKDLKFWEVDLRDRMTEQLDQTPLGRKFLFQTGITQSSSNKRVSTQ
                     STALTTYRRPTKRRRKA"
     CDS             5652..5882
                     /gene="ORF Z"
                     /note="frame starts at 5631"
                     /codon_start=1
                     /translation="MLPLTVCLLLDIHFTILLMRMAKRWSLKFPLISSGPSVSVSQIP
                     IPLHFVISPFLTLTRSVWSGVFVGLRFLGDSP"
BASE COUNT     2101 a   1665 c   1908 g   1940 t
ORIGIN      
        1 acaatcataa tcatcgccct ttcgtgttat ttcttgtaac gaattcgtta caaaacacac
       61 acacagtata taagatagag gaacggattg gtacaccaca gatggcatca acaagcggtg
      121 tgggatccgt cgggcctgca agctgttgcg agacgcagaa gccacatacc atacgggagt
      181 tgtgtttggc gcagcagata acttatccat gcatacagct ctgctgccat tattgctata
      241 agatccttag cgtattggat atttacgctt tcgaccagag ctgtctgtac ttatcctggg
      301 gagaaggggg gccaacgggt atttgttctc agtgtactag agtgcttgca aggctggagt
      361 tcactgcacg gcacgaagtg tcttgtgcag ccagccgtct gccgcacttt ataggacaga
      421 gcctcagcga ccttgaggtg aggtgtgtga ggtgcctagc tcttctacaa tctgtggaaa
      481 aggattacat attgcgggaa gacttgtctg tgcatagaat tggcgggatc tggaggggaa
      541 cttgtgttcg atgtatggta ggactgtatt agctgtgaga ctaatatact gtttgctgta
      601 ttgtattgct gtaatcgtgc gtaaattgct ataccctgta ataatgagag ggaatagtgt
      661 tgacctgcaa gaaattgtgc ttgttcagca gggggaggta cctgagaatg ctgcagtgca
      721 ttcaggggag cattctgatg atgagggtga gagcgaggag gaggagcggg aacaggtgca
      781 gcaagtcccc acacccagga gaacattata cctggtagag agtcagtgtc cattttgcca
      841 ggctatcata cgatttgtat gcgtagcaag caacactggg atacggaatc tacaggcact
      901 cctggtcaac agtcaccttg acctcgcttg tcacgcctgt gtcgagcaga atggcgtcca
      961 gggtctcaga caccggcaat ggcaatgaaa acaaagagaa tgaaggtaca gtggcatctg
     1021 atcattctga ggcgcgttgt agctatatat tatttgaggc tgaatgtagc gatggcgggg
     1081 acgatgagga aagtatggag gatagcttgg tggaagacct tgtggatgat gcttctgtgc
     1141 atcagggaaa ttccttgtcg ctgtttcatg cccaaactgt cgaggaatac gagggagaga
     1201 tccagagcct aaaacgaaag tttatcctga gtcccttgca tagggatgtg gcagaactaa
     1261 gcccgcgtct ggcgggtgtt tccctggaag aaaaccgtgg gaaaaaggct cgcaaatctc
     1321 tgttccacga tgacagtggc atagacagca gcgcagtgga agtctcccag ctatctagta
     1381 cgccatcagc tccagggcca gacatccggc tgcctaaacc ctcagatata gatctagagc
     1441 cactgttcca aagccgccag cgctgtacgc atatgtatag caaatttaaa gctgtgtacg
     1501 gggttagctt tacagatata accaggccat tcaaaagcga caaaacaaca tcacagcatt
     1561 gggttgtggc cgcctactat ttagcttttg atagtgagat aagtgctatg gaggttttgc
     1621 tgcgacaaca atgccaattt ttatacattg acaacaatga tggcattata ctgttcttcc
     1681 tggaatacaa cgtgcagaaa tctaggacta cagtgtacaa ttggttcaca gccaatttcc
     1741 attataatga aaatagaatg ctagctaatc cgccaaggac acgaaacatg cctgctgctt
     1801 tattcttcta tcatagattt atgggtacag ggggtataaa acatggcgca atgccagaaa
     1861 taattgtaaa ccagtgcgtg gtgtctaatc agcagacaga cacctttgaa ttatcacgta
     1921 tggtacagtg ggcactggac aacgatctgc aagatgaaca tatgttagct ttagagtatg
     1981 ctttgcttgc tgaaagtgat ggcaatgcgc gggctttttt aaagcagaat aatcagccaa
     2041 tgatagtgaa gaattgtagc ataatggtta gacactacaa gacagcgctg gtcgcaaaaa
     2101 tgtctatttc acagtatgtg aataagcggt gtctggacca tggggaagct gatgaaaaca
     2161 gctggcgggg aattgtgcat tttctgaggt atcaaggtca ggaattcctg cccttcatgt
     2221 gtaaaatgca caatttccta caccatagac caaagaaatc aacacttgta ttatgtggac
     2281 cgtcggacac aggcaaatca tattttgcca atggtcttaa caaatttttg gatggacacg
     2341 tgctgagctt tgtcagcaat gggtcacatt tttggttatc accattacgt ggggcacggt
     2401 gctgtctaat agacgatgcg accctcacgt tttggaggta cgcggaccaa aacatgaggg
     2461 cactgctaga tggatatgag atttccattg atgcaaaaca cagaaaccca atgcaaacta
     2521 gagcaccacc attaataata accacaaatg aggacattat gcgattagat gaattcaaat
     2581 atctgcaaac cagaacaatg tatgtgtact ttaacaagcc atttcctctt aaaggaaatg
     2641 ggcaaccgtt atattacatt gatggttata catggaactc tttttttagg aaattttggc
     2701 gtcacctaaa tctaaaagac cctgaggatg agtcagatgg agagactcct ggaacgatta
     2761 gactatatac aagagcagat actgacacta tatgagaaag atagtgttga cctagaggat
     2821 catataaggc tatggaatct gctaaggagg gaaaatgcaa tctggtatgt actcagacag
     2881 gaaggacacg caagggtcgg cggcagagcg gtgccggcaa tgacggtatc ggaagccaat
     2941 gccaaattcg caatagaaat gcagataaag ctagaatcac taaaggccag tccctatgcg
     3001 gccgagggct ggtcattgca agaaaccacc aaggaacggt acttggctga accgtctcgg
     3061 acatttaaga aattagggca gccagttacc ctaatgtttg acaatgatcc cgaaaacctt
     3121 acagaagttg tattgtggaa atgggtttat tatattacac caacagatga atggtataaa
     3181 gctagaggtg gcattgatga cactggtata tactacattg accacgagtc tgttaaaatg
     3241 tactatgtga gatttgacat ggaagcggag aactttagcg agacaggcac tgtcacctac
     3301 cggctaggca gcgccctggt aaatgtacct gaacctgtaa ctgttaccga cagctcctcc
     3361 acgagggaga gaaccccaaa ggtactacga ccgcaggggt cgagacgacg cagaaacgag
     3421 gaaacggggg agccggtcgc cccagcccct aagcgaagac gaggagctta cggacgcaga
     3481 tcctccccga aggcccaacg caggaccgcg gcgtcgcctg tttctagagg aaacggagga
     3541 tcgtctgact tcacttctgg agagtctgac gaaggacatc gagtcagaca tagagcactt
     3601 cgaaagaaaa ctgcgggtgt tgctccagca gaaggacact atctagttgg cgccaaaggt
     3661 ccagtgaata gcctgcggtg cttaaggtac aaatggaaaa acaagtatag cggtgacata
     3721 atgtatctgg ggactacttt cacatggacg gagtctgacg ggacagaacg gtgtgggtcg
     3781 gggcgctttt tttgtgcttt ctctaatgaa acaaaaagag aaaagttcct caaatctgtc
     3841 aagattccta aaaacattgg gctgtttcgc gcacacgcag aaaagctgtg acctgtgtat
     3901 cattaaacaa tgcttgctag gcaaagggtt aaacgcgcta atcctgaaca actgtataag
     3961 acatgcaaag caacgggggg cgattgtcca cccgatgtta ttaaacgcta tgagcaaact
     4021 acacctgctg atagtatatt aaagtatggg agtgtagggg ttttctttgg cggtctgggc
     4081 attggcacag gacgtggtgg cggtggcaca gtgcttgggg ctggggcagt tgggggacgc
     4141 ccgtccatat ccagtggtgc aattggtccc cgggatattt tgccaattga atcagggggg
     4201 ccttcactgg cagaggaaat acctctgctt cccatggcac cccgtgtgcc aaggcctaca
     4261 gatccctttc ggccgtcagt gctggaagag ccttttatta taaggcctcc tgaacgccca
     4321 aacattttgc atgagcagcg tttccctaca gacgctgcac catttgacaa tggcaacaca
     4381 gaaatcacaa ccattcctag ccaatatgat gttagtgggg gaggggttga cattcagata
     4441 attgaactcc ctagtgtgaa tgaccccggt ccctcggttg ttacccgcac acaatacaac
     4501 aatccaacgt ttgaggtgga ggtgtccact gacattagtg gagaaacctc atcaacggac
     4561 aacattattg taggagctga aagcggtggc acatccgtag gtgacaatgc tgaactgata
     4621 cctttgctag atatatcccg gggggacaca attgacacaa caatacttgc ccctggcgag
     4681 gaggagactg cctttgtgac cagcactcct gaacgtgtgc ctatacagga gcgattacct
     4741 attaggccct atggcagaca gtatcagcaa gtgcgagtta ccgaccctga atttttagac
     4801 agcgctgcag tacttgtctc tttagagaat ccagtgtttg atgcagacat tactctcacg
     4861 tttgaggatg atctgcagca ggcactacgt agtgacacag acctgcggga cgtgcgtcgc
     4921 ctcagtagac cttattacca gaggcgcact actggccttc gtgttagtcg cctggggcaa
     4981 cgtcggggta ctatatccac gcgctctggt gttcaggtag gctccgctgc tcattttttc
     5041 caggacatta gtccaatcgg ccaggctatt gagccaattg atgcaattga actagatgta
     5101 ctgggtgagc aatccggtga ggggactatt gtgagaggag accctacgcc ttctattgag
     5161 caagacatag gactaaccgc tttgggggac aacattgaaa atgaattgca ggaaatagat
     5221 ttattaactg cggatggtga agaagaccag gagggcagag acctgcagtt ggtattttcc
     5281 actggcaatg atgaggtggt tgatattatg actataccta tacgtgcagg cggggatgac
     5341 aggccttcag tatttatttt tagcgatgat ggcactcaca ttgtctatcc tactagcaca
     5401 acagccacca ccccactcgt gcctgcacag cccagcgatg tgccctacat tgttgttgac
     5461 ttgtatagtg gaagtatgga ttatgatata catcctagcc tgttgcgcag gaaacgtaaa
     5521 aaacgcaaac gtgtttattt ttcagatggc cgtgtggctt ccaggcccaa atagatttta
     5581 cttaccccct caacctatac aacggacatt gaacacagag gaatacgtga gacgcaccag
     5641 tactttcctc catgctgcca ctgaccgttt gcttactgtt ggacatccat tttacaatat
     5701 tactaatgcg gatggcaaag aggtggtccc taaagtttcc tctaatcagt tcagggcctt
     5761 ccgtgtccgt ttcccaaatc ccaatacctt tgcattttgt gataagtccc tttttaaccc
     5821 tgacaaggag cgtctggtct ggggtattcg tgggattgag gtttctaggg gacagccctt
     5881 aggtattggt gtaacaggga accctttttt taataagttt gatgatgctg aaaatcccta
     5941 caatggtata aacaaaaata acattactga ccaaggttca gactcaaggt tgagcattgc
     6001 atttgaccct aagcaaacac agctgctgat agtaggtgct aaacctgcaa agggtgagta
     6061 ctgggacgtt gctgcaacat gtgaaaaccc tccactgacc aaagcagatg acaaatgtcc
     6121 tgctctagag cttaagtcct catacattga ggatgcagac atgagtgaca taggcctggg
     6181 aaacttgaat ttttctacac tgcagagaaa caaatccgat gccccattag atattgtgga
     6241 ttctatctgc aaatatcctg actacctgca aatgatagaa gaactatatg gagaccacat
     6301 gtttttctat gtgcggcgtg aagctctgta tgctaggcat ataatgcaac acgcgggcaa
     6361 gatggatgct gagcaatttc ccacttctct gtacatagac tcctctgtag aaggtgagaa
     6421 attaaattcc ttgcagcgca ctgataggta tttcatgaca cccagcggct ccctggtagc
     6481 tactgagcag cagctgttta acaggccctt ttggctgcag agatcccagg gccataacaa
     6541 tggcatactg tggcacaacg aggcctttgt aacattggtt gacactacca ggggaactaa
     6601 ctttaccatc agtgttcctg agggggatgc ttcttcatat aacaattcta agttttttga
     6661 gtttttaagg cacaccgagg agtttcagct tgcctttatt ctacagctgt gtaaggtaga
     6721 ccttacccct gagaatttgg cttacataca cacaatggat ccatccatta ttgaagactg
     6781 gcatttagct gtcacttcac ctcccaattc tgtactggag gatcattata ggtacatact
     6841 gtccattgca actaaatgtc cctctaagga tgcagatgat acctccactg acccatacaa
     6901 agatcttaag ttttgggagg ttgatctacg ggatcgtatg acagagcaat tggaccagac
     6961 tccccttggc aggaagtttt tgtttcaaac tggtatcact cagtcatcat caaataagcg
     7021 ggtgtccacg cagtctactg cccttactac ctacaggcgg cctactaagc gccgccggaa
     7081 ggcttaaacg aattgctggt attgtggtgc ggtgtcctcg acggtccatg tgtcatctta
     7141 taatcacttg gtcagtccag ggtacaccac tccattatct atttacttcg catgtatttc
     7201 tctgttatgt tcctgtatgg gttatgaatg tgttaataaa atatgttggt aacgctgtgc
     7261 acgggtttgt tcacgttcat gtctcatgat ttggcacccc tgtattcccg ccgccgcccg
     7321 ggggatcgca gatataatcc ccaaacccaa agcgttccaa cattggcaaa cgtctctggc
     7381 cccgatacaa ctgaaacggt ctgtcttgcc aatagcccca tctggcgggg attcaactga
     7441 aacggtgtgt actgccaagt aacatttttg ttattggaac gcctccggtg ctggcggaag
     7501 cgcaaggatt taggcgcgaa gacagtttta ttgccaaaac cttttggttg ctgccaatag
     7561 caggcgtggt ctcaacgaat tcgttgcggc aataggtatg taccatggtt atga
//