From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: tabA=diaminopimelate decarboxylase homolog [Pseudomonas syringae,
Date: 29 Dec 92 01:20:48 GMT
Distribution: bionet
Checksum: 25725 9

LOCUS       S112703      2927 bp    DNA             NLM       07-DEC-1992
DEFINITION  tabA=diaminopimelate decarboxylase homolog  [Pseudomonas syringae,
            pv. tabaci, PTBR2.024, Genomic, 4 genes, 2927 nt]
ACCESSION   S43608 M88485
KEYWORDS    .
SOURCE      Pseudomonas syringae PTBR2.024 pv. tabaci
  ORGANISM  Pseudomonas syringae
            Unclassified.
REFERENCE   1  (bases 1 to 2927)
  AUTHORS   Engst,K. and Shaw,P.D.
  TITLE     Identification of a lysA-like gene required for tabtoxin
            biosynthesis and pathogenicity in Pseudomonas syringae pv. tabaci
            strain PTBR2.024.
  JOURNAL   Mol. Plant Microbe Interact. 5, 322-329 (1992)
  STANDARD  full automatic
COMMENT     This entry [NCBI gibbsq 112703] was created by the journal scanning
            component of NCBI/GenBank at the National Library of Medicine.
            This sequence comes from Fig. 4.
FEATURES             Location/Qualifiers
     CDS             1..411
                     /partial
                     /note="mismatches(104[Y->T],107[E->G],108[Q->N]).
                     Description: orf4 5' of tabA;  For the protein sequence
                     (NCBI gibbsq 112704):  Method: conceptual translation
                     supplied by author.  This sequence comes from Fig. 4.
                     Author-given protein sequence is in conflict with the
                     conceptual translation"
                     /codon_start=1
                     /translation="LEQVLEYYLGECLRYVNRGLGLFPDCDGMYLQLSYFVQLGALTL
                     QHGGDQPVKLLVDHGALLAGLRSLARVLADALLAGNPEAAVAFYQFYGPARLQPLQPL
                     VYALEQSPAQSIEYVQEPVRVPTDCDATCAQARL"
     CDS             428..1123
                     /note="mismatches(24[S->T],172[N->D]).  Description: orf1
                     5' of tabA;  For the protein sequence (NCBI gibbsq
                     112706):  Method: conceptual translation supplied by
                     author.  This sequence comes from Fig. 4.
                     Author-given protein sequence is in conflict with the
                     conceptual translation"
                     /codon_start=1
                     /translation="MNNSIQDLKQVEDYYGTTRRFGDSDATIYEIWEQGGAFNDSITP
                     STYSQEYRSHLGLKLKSLTEEGAIIFSIGCGNGFVEGDLVQAKRRVLAIDFNDEAVAL
                     SRKKGVDAYTADFFELEPGALAGVKSIYADGLLGHLFHPELELKPTFEKLKELNLESG
                     TTLVFSNDSPRNPEALFAAHDKVDGFWFISRDYLRDALTEAGFKIEESYYFPYTRPIS
                     GLRNRTLCVALVP"
     CDS             1158..2420
                     /note="GTG start codon; mismatch 96[L->I].  Description:
                     diaminopimelate decarboxylase homolog;  For the protein
                     sequence (NCBI gibbsq 112707):  Method: conceptual
                     translation supplied by author.  This sequence comes from
                     Fig. 4.
                     Author-given protein sequence differs from the conceptual
                     translation for reasons explained in citation.
                     Author-given protein sequence is in conflict with the
                     conceptual translation"
                     /gene="tabA"
                     /codon_start=1
                     /translation="MPISESFARRLFPLLDELTNTYPTPFHIYDERAIVQTHRNVAQA
                     FADSAFRQYFAVKALPTPAILSLLLKEGSGLDCSSPVELMLAERLGARGDDLVFTSNN
                     TSLSEYQMALQAGALVTFDDRSMLEQVIALPDIVAFRVSPHGVIARSSQMGNAQQSKF
                     GIPEAELVQSYREAWDRGARRFGIHGMMCANELSLEAAVQAGVQVIEVGARVAREAGI
                     ELEYINIGGGLGIPYRIDDQALDLTAYADALKRALKQAFPHNTPKLLMELGRYISGPH
                     GVLVSRVINRCSKGREIVGLDASMSALMRPGLYGAYHHLTLPFADQRPEGVFDVVGAL
                     CENFDKFAVDRLLPSPLIGDLALIHDTGAHGHAMGFTYNGRLRPAELMLTDDGDVVEI
                     RRAETFDDHTGPIQWQPVDVFNPTRCVK"
     CDS             2421..2927
                     /partial
                     /note="Description: orf3 3' of tabA;  delta
                     1-piperidine-2,6-dicarboxylate succinyl transferase
                     homolog;  For the protein sequence (NCBI gibbsq 112708):
                     Method: conceptual translation supplied by author.  This
                     sequence comes from Fig. 4."
                     /codon_start=1
                     /translation="MSNRALIEEAFERRTQLTTEELSALVPPIETGLAALERGELRAA
                     RAQEGQWVCDTFVKKLILLSFLTRENTVGETNPGRPKSYDKLPLKFEQWDDAAFRDAC
                     IRVVPGAVVRAGAYIAPGAVLMPCFINIGAYVGEGTMIDTWSTVGSCAQVGSRCHISG
                     GVGLGGVLE"
BASE COUNT      618 a    882 c    824 g    603 t
ORIGIN      
        1 ctcgagcagg tactcgaata ctacctgggt gagtgcttgc gttacgtaaa ccgggggctc
       61 gggcttttcc ccgattgcga cgggatgtac ttgcaattgt cttatttcgt ccagctagga
      121 gctctgactc tgcagcatgg aggtgatcaa cccgtaaaac tgctggtcga tcatggcgcc
      181 ttgctcgctg gcttgcgctc gctagcacga gttttagccg acgccctgct cgcgggcaat
      241 cctgaggctg ctgtcgcctt ctaccagttt tacggaccag cacggctgca gccgttgcag
      301 ccactggtca ctgcgctagg caactcgccc gcgcagtcca tcgaatacgt gcaagaacct
      361 gtacgtgtac caacggactg cgacgcaact tgcgcgcaag cccgcctcta aacaaggaga
      421 gacagagatg aacaattcga tacaggacct caaacaggtc gaagactact acggcaccac
      481 ccgccggttt ggcgatacgg atgccacgat atacgagatc tgggaacagg gtggagcgtt
      541 caacgactcc atcacgccat ccacctacag ccaagaatat cgctcgcatc tggggctcaa
      601 gctcaagtcc ctcacagagg aaggcgcgat aattttctcc attggctgcg gtaatggttt
      661 tgtcgagggc gatctggtgc aagccaaacg tcgcgtgctg gctatcgact tcaacgatga
      721 agcagttgcg ctgagccgga aaaaaggagt ggatgcgtac acagccgact tcttcgaact
      781 cgagcccggc gctctcgctg gcgtcaagtc gatctacgca gacggtttgc tcggccactt
      841 gttccaccca gagttagagc tcaagccaac tttcgaaaaa ctcaaggagc tgaatctaga
      901 atccggcaca accctagttt tctccaacga ctcgcctcgc gatccagagg ctctctttgc
      961 cgcccacgat aaagtcgacg gcttctggtt catatccaga gactacctgc gtgatgcgct
     1021 gactgaggct ggcttcaaga tcgaagagtc gtactacttc ccttacacac gcccgatcag
     1081 tggtctgcgt aatcgaaccc tttgcgtcgc actagtgccc tgagtcaatc acgcctgcgc
     1141 cgcgaggaga aaccgccgtg ccaatatccg aaagcttcgc ccgacgtttg ttccccctac
     1201 ttgatgagct gacgaataca tacccgacgc cctttcatat ttatgacgag cgcgccatcg
     1261 tccagactca tcgaaacgtg gcgcaagcct tcgccgacag cgcgtttcgt cagtacttcg
     1321 cggtcaaggc gctacccact ccggccatcc tgtccctgct gctcaaggag ggcagcgggc
     1381 tcgactgctc gtcgccggtc gaactgatgc ttgccgaacg actgggcgcg cggggtgacg
     1441 acattgtttt cacctccaac aacacgtctc tcagcgaata ccagatggcg ctgcaggcag
     1501 gcgccctagt tacgttcgac gaccgaagca tgcttgaaca agtgatagcc ttgccggata
     1561 tcgttgcctt tcgcgtgtcg ccccatggcg tcattgcccg gtcgtcacag atgggcaatg
     1621 cccagcaatc aaaattcggc attcccgagg ccgaactagt tcagagctat cgcgaggcat
     1681 gggatcgcgg tgcccgacgt tttggtatcc acggcatgat gtgcgccaac gagctgtcac
     1741 tggaggccgc cgtgcaggcc ggcgtgcaag tcatcgaggt cggggcgcga gtggcccgcg
     1801 aggcaggcat cgaactcgaa tacataaata tcggcggtgg cctaggcatt ccctaccgga
     1861 tcgacgacca ggctcttgat ctcacagcgt atgccgatgc gctgaaacgc gcgttgaaac
     1921 aagcattccc acacaacaca cccaagctgc tgatggagtt aggccgttac atcagcggcc
     1981 cgcacggggt gcttgtgtct cgggtcatca accgctgcag caaagggcgg gaaatcgtcg
     2041 gcctcgatgc atcgatgtcg gcgctcatgc gcccgggact gtatggcgcc taccaccacc
     2101 tgacgctgcc cttcgccgat caacgccccg aaggtgtgtt cgatgtagtc ggcgcactgt
     2161 gcgagaactt tgacaagttt gccgtggatc gcctgctgcc gagcccgcta atcggcgacc
     2221 tcgcattgat ccatgataca ggtgcccatg gtcatgccat ggggtttacc tacaatggcc
     2281 ggttgcgtcc ggcagaactg atgctgacag acgatggcga tgtcgttgaa atccgtcggg
     2341 ccgagacctt tgatgatcat accggcccga ttcaatggca acccgttgac gtcttcaacc
     2401 ccaccaggtg cgttaaataa atgagtaacc gtgcattgat tgaagaagcg ttcgagcggc
     2461 gtacgcagct gacgacggaa gaactgtcgg ctctggtgcc gccgatcgaa accggcctcg
     2521 cagctctgga gcgtggcgag ctccgcgcag cacgtgcgca ggaaggacag tgggtctgcg
     2581 ataccttcgt caagaagctg attctgctgt cctttctaac tcgcgaaaat accgtgggcg
     2641 aaaccaaccc cgggcggccg aaaagctacg acaaactacc cctaaaattc gaacaatggg
     2701 acgacgccgc gtttcgtgac gcttgcatcc gcgtggtccc cggcgccgtc gtccgggccg
     2761 gtgcgtacat cgccccgggc gccgtactga tgccgtgctt cattaacatt ggcgcgtacg
     2821 tcggcgaagg cacaatgatc gatacctggt cgacggtcgg ctcctgtgcc caagtcggct
     2881 cacgctgcca tatctccggt ggcgtgggct tgggcggcgt actcgag
//