HDTenEightyP/NetNews huggingface dataset:
From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: C. elegans cDNA clone cm19f8; 5' end, single read
Date: 10 Sep 92 10:24:16 GMT
Distribution: bionet
Checksum: 35309     2

LOCUS       CEL19F8       270 bp ds-DNA             INV       10-SEP-1992
DEFINITION  C. elegans cDNA clone cm19f8; 5' end, single read
ACCESSION   Z14685
KEYWORDS    expressed sequence tag.
SOURCE      Caenorhabditis elegans DNA.
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
            Rhabditina; Rhabditoidea; Rhabditidae.
REFERENCE   1  (bases 1 to 270)
  AUTHORS   Waterston,R., Martin,C., Craxton,M., Huynh,C., Coulson,A.,
            Hillier,L., Durbin,R.K., Green,P., Shownkeen,R., Halloran,N.,
            Hawkins,T., Wilson,R., Berks,M., Du,Z., Thomas,K., Thierry-Mieg,J.
            and Sulston,J.
  TITLE     A survey of expressed genes in Caenorhabditis elegans
  JOURNAL   Nature Genet. 1, 114-123 (1992)
  STANDARD  full automatic
COMMENT     *source: stage=varied; *source: tissue=whole animal; *source:
            clone_library=Chris Martin sorted cDNA library; *source: sex=
            Hermaphrodite;
            Submitted (16-AUG-1992) to the EMBL Data Library by: Nematode
            Sequencing Project, MRC Laboratory of Molecular Biology, Cambridge
            CB2 2QH, England and Department of Genetics, Washington University,
            St. Louis, MO 63110, USA. E-mail: jes@mrc-lmba.cambridge.ac.uk or
            rw@nematode.wustl.edu
            From EMBL    entry CE19F8;  dated 20-AUG-1992.
BASE COUNT       80 a     53 c     58 g     63 t     16 others
ORIGIN
        1 ccaaatcggt agtnntcttc aacgacgtgg aagnnnnngn ctcanagctt gaccagtatg
       61 agtgcttccn tcagttgtct gctcaaatta tgaccaagag acggatacaa cttttacacn
      121 gtcaacacca ccaaagaaca tcgcttgagg aagcangaag aagttgaaaa gggagaggac
      181 actattcacg tgtacaagga tggttacaag atcgagtaca atggtgttcg tnatccagna
      241 acttttnttt catngctgat ggatatccca
//
From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: C. elegans cDNA clone cm2f8 encoding C. elegans paramyosin (SP:
Date: 10 Sep 92 10:25:17 GMT
Distribution: bionet
Checksum: 65418     3

LOCUS       CEL2F8        433 bp ds-DNA             INV       10-SEP-1992
DEFINITION  C. elegans cDNA clone cm2f8 encoding C. elegans paramyosin (SP:
            MYSP$CAEEL); 5' end, single read
ACCESSION   Z14721
KEYWORDS    expressed sequence tag.
SOURCE      Caenorhabditis elegans DNA.
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
            Rhabditina; Rhabditoidea; Rhabditidae.
REFERENCE   1  (bases 1 to 433)
  AUTHORS   Waterston,R., Martin,C., Craxton,M., Huynh,C., Coulson,A.,
            Hillier,L., Durbin,R.K., Green,P., Shownkeen,R., Halloran,N.,
            Hawkins,T., Wilson,R., Berks,M., Du,Z., Thomas,K., Thierry-Mieg,J.
            and Sulston,J.
  TITLE     A survey of expressed genes in Caenorhabditis elegans
  JOURNAL   Nature Genet. 1, 114-123 (1992)
  STANDARD  full automatic
COMMENT     *source: stage=varied; *source: tissue=whole animal; *source:
            clone_library=Chris Martin sorted cDNA library; *source: sex=
            Hermaphrodite;
            Submitted (16-AUG-1992) to the EMBL Data Library by: Nematode
            Sequencing Project, MRC Laboratory of Molecular Biology, Cambridge
            CB2 2QH, England and Department of Genetics, Washington University,
            St. Louis, MO 63110, USA. E-mail: jes@mrc-lmba.cambridge.ac.uk or
            rw@nematode.wustl.edu
            From EMBL    entry CE2F8;  dated 20-AUG-1992.
BASE COUNT      142 a    103 c    108 g     77 t      3 others
ORIGIN
        1 acaacttcat gaggaacaag aacactcgat gaaaatcgat gccttgagaa agtntcttga
       61 ggagcaagtc aagcaactcc aagttcaaat tcaagaagct gaggctgccg ctcttctcgg
      121 aggaaagaga gtcatcgcca agttggagac cagaatccgt gatcttnaga ccgctcttga
      181 tgaggaaacc agaagacaca aggagaccca gaatgccttg agaaagaagg atcgccgcat
      241 caaggaggtt caacaactcg ttgatgaaga gcacaagaac ttcgttatgg ctcaagacac
      301 cgctgatcgt nttaccgaga agctcaacat ccagaagaga caacttgctg agtccgagtc
      361 cgtaacaatg caaaacctcc agagagtccg cagataccaa cacgagctcg aggatgctga
      421 gggccgtgcc gat
//
From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: C. elegans cDNA clone cm9a1 encoding propionyl-CoA carboxylase beta
Date: 10 Sep 92 10:29:57 GMT
Distribution: bionet
Checksum: 28452     2

LOCUS       CEL9A1        365 bp ds-DNA             INV       10-SEP-1992
DEFINITION  C. elegans cDNA clone cm9a1 encoding propionyl-CoA carboxylase beta
            chain homologous peptide; 5' end, single read
ACCESSION   Z14893
KEYWORDS    expressed sequence tag.
SOURCE      Caenorhabditis elegans DNA.
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
            Rhabditina; Rhabditoidea; Rhabditidae.
REFERENCE   1  (bases 1 to 365)
  AUTHORS   Waterston,R., Martin,C., Craxton,M., Huynh,C., Coulson,A.,
            Hillier,L., Durbin,R.K., Green,P., Shownkeen,R., Halloran,N.,
            Hawkins,T., Wilson,R., Berks,M., Du,Z., Thomas,K., Thierry-Mieg,J.
            and Sulston,J.
  TITLE     A survey of expressed genes in Caenorhabditis elegans
  JOURNAL   Nature Genet. 1, 114-123 (1992)
  STANDARD  full automatic
COMMENT     *source: stage=varied; *source: tissue=whole animal; *source:
            clone_library=Chris Martin sorted cDNA library; *source: sex=
            Hermaphrodite;
            Submitted (16-AUG-1992) to the EMBL Data Library by: Nematode
            Sequencing Project, MRC Laboratory of Molecular Biology, Cambridge
            CB2 2QH, England and Department of Genetics, Washington University,
            St. Louis, MO 63110, USA. E-mail: jes@mrc-lmba.cambridge.ac.uk or
            rw@nematode.wustl.edu
            From EMBL    entry CE9A1;  dated 20-AUG-1992.
BASE COUNT       94 a     86 c     89 g     84 t     12 others
ORIGIN
        1 gtntganagc tttnggtatg ttgtcccgat ttgcccgtca actggcgctg ccagtnttca
       61 acggagttct tcatccaact cgagccacca gttcgatcgc ncataccatc aaggttgccc
      121 ataagatcga tgagaccaga gagaaagcnc ttctcggagg tggaaagaag cgcgtcgacg
      181 ctcaacatgc tcgcngaaag ctaacagctc gcnaacgnat tgatcttctt ttggatagaa
      241 acaccttcag ggagtatgac atgtttnccg agcacacctg naacgacttc ggtatgcaga
      301 aagagaaata tcctggagat tcggttgtna ctggacgtgg agaaatcaac ggacgtaccg
      361 tcttt
//
From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: C. elegans cDNA clone cm5e5; 5' end, single read
Date: 10 Sep 92 10:27:47 GMT
Distribution: bionet
Checksum: 11170     2

LOCUS       CEL5E5        325 bp ds-DNA             INV       10-SEP-1992
DEFINITION  C. elegans cDNA clone cm5e5; 5' end, single read
ACCESSION   Z14809
KEYWORDS    expressed sequence tag.
SOURCE      Caenorhabditis elegans DNA.
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
            Rhabditina; Rhabditoidea; Rhabditidae.
REFERENCE   1  (bases 1 to 325)
  AUTHORS   Waterston,R., Martin,C., Craxton,M., Huynh,C., Coulson,A.,
            Hillier,L., Durbin,R.K., Green,P., Shownkeen,R., Halloran,N.,
            Hawkins,T., Wilson,R., Berks,M., Du,Z., Thomas,K., Thierry-Mieg,J.
            and Sulston,J.
  TITLE     A survey of expressed genes in Caenorhabditis elegans
  JOURNAL   Nature Genet. 1, 114-123 (1992)
  STANDARD  full automatic
COMMENT     *source: stage=varied; *source: tissue=whole animal; *source:
            clone_library=Chris Martin sorted cDNA library; *source: sex=
            Hermaphrodite;
            Submitted (16-AUG-1992) to the EMBL Data Library by: Nematode
            Sequencing Project, MRC Laboratory of Molecular Biology, Cambridge
            CB2 2QH, England and Department of Genetics, Washington University,
            St. Louis, MO 63110, USA. E-mail: jes@mrc-lmba.cambridge.ac.uk or
            rw@nematode.wustl.edu
            From EMBL    entry CE5E5;  dated 20-AUG-1992.
FEATURES             Location/Qualifiers
     misc_feature    1..8
                     /note="trans-spliced leader SL1"
BASE COUNT       97 a     75 c     64 g     79 t     10 others
ORIGIN
        1 agtttgagga tgaccgatcc ggatcgtctc aaccaaattc tacaagatca accatacatt
       61 gaagggttcg tgcaaccatc ggccgccgat ttctctgcga gagcttcgat aacagaaaaa
      121 gaattganag ggcgagagca tttggnacgc tggtttcagc atttatcatc ttttganatg
      181 actgctgaaa ctnatgtccg atcaacggag aacctacccc aacanatcct cgntttcctt
      241 caagaatcga atganttcaa ctcanttcaa ctcgcccagc aatngaatct cgntcatcag
      301 aaagtgattg gagcaatcaa aagtt
//
From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: C. elegans cDNA clone cm13h5; 5' end, single read
Date: 10 Sep 92 10:18:18 GMT
Distribution: bionet
Checksum: 29111     2

LOCUS       CEL13H5       336 bp ds-DNA             INV       10-SEP-1992
DEFINITION  C. elegans cDNA clone cm13h5; 5' end, single read
ACCESSION   Z14479
KEYWORDS    expressed sequence tag.
SOURCE      Caenorhabditis elegans DNA.
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
            Rhabditina; Rhabditoidea; Rhabditidae.
REFERENCE   1  (bases 1 to 336)
  AUTHORS   Waterston,R., Martin,C., Craxton,M., Huynh,C., Coulson,A.,
            Hillier,L., Durbin,R.K., Green,P., Shownkeen,R., Halloran,N.,
            Hawkins,T., Wilson,R., Berks,M., Du,Z., Thomas,K., Thierry-Mieg,J.
            and Sulston,J.
  TITLE     A survey of expressed genes in Caenorhabditis elegans
  JOURNAL   Nature Genet. 1, 114-123 (1992)
  STANDARD  full automatic
COMMENT     *source: stage=varied; *source: tissue=whole animal; *source:
            clone_library=Chris Martin sorted cDNA library; *source: sex=
            Hermaphrodite;
            Submitted (16-AUG-1992) to the EMBL Data Library by: Nematode
            Sequencing Project, MRC Laboratory of Molecular Biology, Cambridge
            CB2 2QH, England and Department of Genetics, Washington University,
            St. Louis, MO 63110, USA. E-mail: jes@mrc-lmba.cambridge.ac.uk or
            rw@nematode.wustl.edu
            From EMBL    entry CE13H5;  dated 20-AUG-1992.
BASE COUNT      103 a     72 c     75 g     74 t     12 others
ORIGIN
        1 cgaaaacntg attaaaccaa ccggatctga catgataatc gcccggaaaa agctgcaact
       61 acagagatta tggnggcaaa gaggatgccg ngtggctacg tatatttncc tggnagtttt
      121 agttttattt ggatttgtct acaatagcaa gggaaatagc atgtnatcna tcaaatcgga
      181 cagtgccgct caacaatttg atgatttaga cgatctcaca aataaggagc tccccggtgg
      241 tcctgatcct aatacaatct tccgtggctc agaactagga nactacgngc caanagagcc
      301 gganatccca tcaaatcagc ccggngagca cggaaa
//
From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: B. circulans gene for small cytoplasmic RNA.
Date: 15 Sep 92 10:02:16 GMT
Distribution: bionet
Checksum: 21599     2

LOCUS       BACCISCR      272 bp ds-DNA             BCT       15-SEP-1992
DEFINITION  B. circulans gene for small cytoplasmic RNA.
ACCESSION   D11419
KEYWORDS    scRNA; small cytoplasmic RNA.
SOURCE      Bacillus circulans (strain ATCC 4513) DNA.
  ORGANISM  Bacillus circulans
            Prokaryotae; Firmicutes; Endospore-forming rods and cocci;
            Bacillaceae.
REFERENCE   1  (bases 1 to 272)
  AUTHORS   Nakamura,K., Honda,K., Nishiguchi,M. and Yamane,K.
  JOURNAL   Unpublished (1992)
  STANDARD  full staff_review
COMMENT     These data kindly submitted in computer readable form by:
            Kouji Nakamura
            Institute of Biological Sciences
            University of Tsukuba
            Tsukuba-shi, Ibaraki 305
            Japan
            Phone:  0298-53-6419
            Fax:    0298-53-6006
FEATURES             Location/Qualifiers
     scRNA           1..272
                     /product="small cytoplasmic RNA"
                     /gene="scr"
BASE COUNT       58 a     65 c     85 g     64 t
ORIGIN
        1 tttgccgtgc taagcggggg aggtagcggt gccctgtact cgcaatccgc tctagcgagg
       61 ctgaattcct ttctgaggct ggtatcctgt agggtctgcc ttaagtaagt ggtgttgacg
      121 tccgggtcct gcgcaatggg aatccatgaa ccatgtcagg tccggaagga agcagcatta
      181 agtggacacc cccatgtgcc gcagggttac ctggactgag ctaactactt aagtaacgct
      241 tatgggtgcc agtcgacaga aggtgcacgg ta
//
From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Human immunodeficiency virus type 1 (Uganda 3110e/1990), partial
Date: 15 Sep 92 10:03:53 GMT
Distribution: bionet
Checksum: 00592     2

LOCUS       HIV3110E      284 bp ss-RNA             VRL       15-SEP-1992
DEFINITION  Human immunodeficiency virus type 1 (Uganda 3110e/1990), partial
            env cds, V3 loop.
ACCESSION   M98937
KEYWORDS    .
SOURCE      Human immunodeficiency virus type 1 (individual_isolate Uganda
            3110e/1990) - - - RNA.
  ORGANISM  Human immunodeficiency virus type 1
            Viridae; ss-RNA enveloped viruses; Positive strand RNA virus;
            Retroviridae; Lentivirinae.
REFERENCE   1  (bases 1 to 284)
  AUTHORS   Albert,J., Franzen,L., Jansson,M., Scarlatti,G., Kataaha,P.K.,
            Katabira,E., Mubiro,F., Rydker,M., Rossi,P., Pettersson,U. and
            Wigzell,H.
  TITLE     Ugandan HIV-1 V3 loop sequences closely related to the
            U.S./European consensus
  JOURNAL   Unpublished (1992)
  STANDARD  full automatic
FEATURES             Location/Qualifiers
     CDS             <1..>284
                     /product="envelope protein"
                     /gene="env"
                     /codon_start=1
                     /translation="NRSLAEEEIIIRSENLTNNAKIIIVQLNESVPINCTRPYNNTRQ
                     GTHIGPGRAYWTTNIIGDIRQAHCNISRARWNKTLQQVAKKLGDLLNKTT"
BASE COUNT      127 a     47 c     50 g     60 t
ORIGIN
        1 aatcggagtc tagcagaaga agagataata attagatctg aaaatctcac aaataatgct
       61 aaaatcataa tagtacagct taatgagtct gtaccaatta attgcacaag gccctacaac
      121 aatacaagac aaggtacaca tataggacca gggcgagcat actggacaac aaatataata
      181 ggagatataa gacaagcaca ttgtaacatt agtagagcaa gatggaataa aactttacaa
      241 caggtagcta aaaaattagg agaccttctt aacaagacaa caat
//
From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Human immunodeficiency virus type 1 (TAN10-1) V3 neutralizing
Date: 5 Sep 92 10:00:39 GMT
Distribution: bionet
Checksum: 41500     2

LOCUS       HIVTAN101X    272 bp ss-RNA             VRL       05-SEP-1992
DEFINITION  Human immunodeficiency virus type 1 (TAN10-1) V3 neutralizing
            domain.
ACCESSION   L01301
KEYWORDS    envelope protein; neutralizing domain; variable region.
SOURCE      Human immunodeficiency virus type 1 RNA.
  ORGANISM  Human immunodeficiency virus type 1
            Viridae; ss-RNA enveloped viruses; Positive strand RNA virus;
            Retroviridae; Lentivirinae.
REFERENCE   1  (bases 1 to 272)
  AUTHORS   Zwart,G., Wolfs,T.F., Bookelman,R., Hartman,S., Bakker,M.,
            Boucher,C.A., Kuiken,C. and Goudsmit,J.
  TITLE     Greater diversity of the V3 neutralization domain of HIV-1 in
            Tanzania than in the Netherlands; serological and genetic analysis
  JOURNAL   Unpublished (1992)
  STANDARD  full staff_entry
FEATURES             Location/Qualifiers
     misc_feature    1..272
                     /note="V3 neutralization domain"
                     /note="putative"
BASE COUNT      120 a     44 c     47 g     61 t
ORIGIN
        1 acatagtaat tagatctgaa aatctgacaa acaatgtcaa aacaataata gtacagctta
       61 aggaacatgt agtaattgag tgtataagac ccaacaataa tacaagagaa agtgtaagga
      121 taggaccagg acaaacattc tatgcaacag gagccataat aggagatata aggcaagcac
      181 attgtaacat tacatattga gataacactt tacgaaaggt agttcagaaa ttagcacagc
      241 acttccctaa taaaacaata aaatttgcac cg
//
From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Human immunodeficiency virus type 1 (Uganda 3120c/1990), partial
Date: 15 Sep 92 10:04:25 GMT
Distribution: bionet
Checksum: 12874     2

LOCUS       HIV3120C      277 bp ss-RNA             VRL       15-SEP-1992
DEFINITION  Human immunodeficiency virus type 1 (Uganda 3120c/1990), partial
            env cds, V3 loop.
ACCESSION   M98969
KEYWORDS    .
SOURCE      Human immunodeficiency virus type 1 (individual_isolate Uganda
            3120c/1990) - - - RNA.
  ORGANISM  Human immunodeficiency virus type 1
            Viridae; ss-RNA enveloped viruses; Positive strand RNA virus;
            Retroviridae; Lentivirinae.
REFERENCE   1  (bases 1 to 277)
  AUTHORS   Albert,J., Franzen,L., Jansson,M., Scarlatti,G., Kataaha,P.K.,
            Katabira,E., Mubiro,F., Rydker,M., Rossi,P., Pettersson,U. and
            Wigzell,H.
  TITLE     Ugandan HIV-1 V3 loop sequences closely related to the
            U.S./European consensus
  JOURNAL   Unpublished (1992)
  STANDARD  full automatic
FEATURES             Location/Qualifiers
     CDS             <1..>277
                     /product="envelope protein"
                     /gene="env"
                     /codon_start=2
                     /translation="NGSLAEEEIIIRSENLTDNAKIIIVQLNESVAINCTRPYNNTRK
                     STRMGPGQALFTIDIIGNIRQAYCNINRVGWNKTLQQVAEKLKDLFNT"
BASE COUNT      120 a     45 c     49 g     63 t
ORIGIN
        1 caatggcagt ctagcagaag aagagataat aattagatct gaaaatctca cagataatgc
       61 taaaatcata atagtacagc ttaatgagtc tgtagcaatt aattgcacaa ggccctacaa
      121 caatacaaga aagagtacac gcatgggacc agggcaagca ctctttacaa tagacataat
      181 aggaaatata agacaagcat attgtaacat taatagagta ggatggaata aaactttaca
      241 acaggtagct gaaaaattaa aagacctttt taacacc
//
From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: C. elegans cDNA clone cm15c2; 5' end, single read
Date: 10 Sep 92 10:19:03 GMT
Distribution: bionet
Checksum: 35705     2

LOCUS       CEL15C2       262 bp ds-DNA             INV       10-SEP-1992
DEFINITION  C. elegans cDNA clone cm15c2; 5' end, single read
ACCESSION   Z14508
KEYWORDS    expressed sequence tag.
SOURCE      Caenorhabditis elegans DNA.
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
            Rhabditina; Rhabditoidea; Rhabditidae.
REFERENCE   1  (bases 1 to 262)
  AUTHORS   Waterston,R., Martin,C., Craxton,M., Huynh,C., Coulson,A.,
            Hillier,L., Durbin,R.K., Green,P., Shownkeen,R., Halloran,N.,
            Hawkins,T., Wilson,R., Berks,M., Du,Z., Thomas,K., Thierry-Mieg,J.
            and Sulston,J.
  TITLE     A survey of expressed genes in Caenorhabditis elegans
  JOURNAL   Nature Genet. 1, 114-123 (1992)
  STANDARD  full automatic
COMMENT     *source: stage=varied; *source: tissue=whole animal; *source:
            clone_library=Chris Martin sorted cDNA library; *source: sex=
            Hermaphrodite;
            Submitted (16-AUG-1992) to the EMBL Data Library by: Nematode
            Sequencing Project, MRC Laboratory of Molecular Biology, Cambridge
            CB2 2QH, England and Department of Genetics, Washington University,
            St. Louis, MO 63110, USA. E-mail: jes@mrc-lmba.cambridge.ac.uk or
            rw@nematode.wustl.edu
            From EMBL    entry CE15C2;  dated 20-AUG-1992.
BASE COUNT       75 a     80 c     47 g     56 t      4 others
ORIGIN
        1 agaagtcact gcctgctgct gtaacaacgc ggacaactgc aacctcaagg atccaaatgt
       61 gaaaccagga ccagcagttc ttccagattt cccaactgct tgctaccagg gactccttgt
      121 caacaaccaa acatacggtg ctccattgac tcttcaaggn tgttacggag actgtgcatc
      181 tatcaccatc tctaccacca tccagaacca gaatcacacc gnaactttgt tgacatgcgn
      241 cccaacaact gtctgncaac ag
//
From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: N.meningitidis porA gene encoding class I outer membrane protein
Date: 10 Sep 92 10:35:12 GMT
Distribution: bionet
Checksum: 43411     3

LOCUS       NGOMC86V2     147 bp ds-DNA             BCT       10-SEP-1992
DEFINITION  N.meningitidis porA gene encoding class I outer membrane protein
            variable region 2 (partial)
ACCESSION   Z14294
KEYWORDS    outer membrane protein; outer membrane protein I; porA gene.
SOURCE      Neisseria meningitidis DNA.
  ORGANISM  Neisseria meningitidis
            Prokaryotae; Gracilicutes; Scotobacteria; Neisseriaceae.
REFERENCE   1  (sites)
  AUTHORS   Barlow,A.K., Heckels,J.E. and Clarke,I.N.
  TITLE     The class 1 outer membrane protein of neisseria meningitidis: gene
            sequence, structural and immunological similarities to gonococcal
            porins
  JOURNAL   Mol. Microbiol. 3, 131-139 (1989)
  STANDARD  full staff_review
REFERENCE   2  (sites)
  AUTHORS   McGuinnes,B., Barlow,A.K., Clarke,I.N., Farley,J.E., Poolman,J.T.
            and Heckels,J.E.
  TITLE     Comparative sequence analysis of the class 1 protein gene (porA)
            from three strains of Neisseria meningitidis: synthetic peptides
            define the epitopes responsible for serosubtype specificity
  JOURNAL   J. Exp. Med. 171, 1871-1882 (1990)
  STANDARD  full staff_review
REFERENCE   3  (bases 1 to 147)
  AUTHORS   McGuinness,B.T.
  JOURNAL   Unpublished (1992)
  STANDARD  full staff_review
REFERENCE   4  (sites)
  AUTHORS   McGuinness,B.T., Lambden,P.R. and Heckels,J.E.
  TITLE     Class 1 outer membrane protein of Neisseria meningitidis: Epitope
            analysis of the antigenic diversity between strains, implications
            for subtype definition and molecular epidemiology.
  JOURNAL   Unpublished (1992)
  STANDARD  full staff_review
COMMENT     *source: strain=MC86;
            From EMBL    entry NMMC86V2;  dated 17-AUG-1992.
FEATURES             Location/Qualifiers
     CDS             <1..>147
                     /function="Fragment encodes P1.16subtype specificity"
                     /note="Entire sequence (produced bydirect sequencing of
                     PCR amplified material)represents an internal fragment of
                     the porA genecontaining one of the variable regions
                     (VR2)encoding the P1.16 epitope."
                     /product="Class 1 outermembrane protein variable region 2"
                     /gene="porA"
                     /label=VR2
                     /codon_start=1
                     /translation="QFVPAQNSKSAYTPAYYTKDTNNNLTLVPAVVGKPGSDVYYAGL
                     NYKNG"
                     /citation=[3]
                     /citation=[1]
BASE COUNT       41 a     37 c     30 g     39 t
ORIGIN
        1 caattcgttc cggctcaaaa cagcaagtcc gcctatacac cggcttatta tactaaggat
       61 acaaacaata atcttactct cgttccggct gttgtcggca agcccggatc ggatgtgtat
      121 tatgccggtc tgaattacaa aaatggc
//