From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Papaya mosaic virus genome, complete sequence.
Date: 5 Jan 93 06:48:30 GMT
Distribution: bionet
Checksum: 55184 15

LOCUS       PMPRNA       6656 bp ss-RNA             VRL       05-JAN-1993
DEFINITION  Papaya mosaic virus genome, complete sequence.
ACCESSION   D13957 D00580
KEYWORDS    capsid protein.
SOURCE      Papaya mosaic virus, cDNA to viral RNA, clones FP7, H3, T21, CP21,
            and TP11.
  ORGANISM  Papaya mosaic potexvirus
            Viridae; ss-RNA nonenveloped viruses; Rod-shaped ss-RNA viruses;
            Potexvirus.
REFERENCE   1  (bases 1 to 6656)
  AUTHORS   Sit,T.L., Abouhaidar,M.G. and Holy,S.
  TITLE     The nucleotide sequence of the 5' end of papaya mosaic virus RNA:
            Site of in virtro assembly initiation
  JOURNAL   Virology 153, 289-296 (1986)
  STANDARD  full automatic
REFERENCE   2  (sites)
  AUTHORS   Abouhaidar,M.G.
  TITLE     Nucleotide sequence of the capsid protein gene and 3' non-coding
            region of papaya mosaic virus RNA
  JOURNAL   J. Gen. Virol. 69, 219-226 (1988)
  STANDARD  full automatic
REFERENCE   3  (sites)
  AUTHORS   Sit,T.L., Abouhaidar,M.G. and Holy,S.
  TITLE     Nucleotide sequence of papaya mosaic virus RNA
  JOURNAL   J. Gen. Virol. 70, 2325-2331 (1989)
  STANDARD  full automatic
FEATURES             Location/Qualifiers
     variation       45
                     /citation=[1]
                     /note="replace(45,'n')"
     variation       55
                     /citation=[1]
                     /note="replace(55,'t')"
     variation       76
                     /citation=[1]
                     /note="replace(76,'t')"
     variation       138
                     /citation=[1]
                     /note="replace(138,'g')"
     variation       5799
                     /citation=[2]
                     /note="replace(5799,'g')"
     variation       5809
                     /citation=[2]
                     /note="replace(5809,'c')"
     variation       5920
                     /citation=[2]
                     /note="replace(5920,'c')"
     variation       5948
                     /citation=[2]
                     /note="replace(5948,'a')"
     variation       5984..5985
                     /citation=[2]
                     /note="replace(5984..5985,'ct')"
     variation       6056
                     /citation=[2]
                     /note="replace(6056,'c')"
     variation       6080
                     /citation=[2]
                     /note="replace(6080,'t')"
     variation       6115..6119
                     /citation=[2]
                     /note="replace(6115..6119,'')"
     CDS             100..4743
                     /product="ORF1 (176K protein)"
                     /codon_start=1
                     /translation="MANLRSVFEQLNDVSLRAVIQEEAYRDIKLTIKETKTYNPYAHP
                     VAVADSLEKLGIETNPFAVKAHTHAAAKTIELDMYKIVSFYLPKENPTTFMFMKRSKL
                     QYFRRGPQQKDVFLNAHIEPKDVARYDVDTLFDKNVTPQITTNTAFMGDTLHFLPLTA
                     IERIFKSSPKLQTLYATMVLPPEALHRLHSLHPGIYELEFHQEHFIYKPGGHAGAAYI
                     HKYEQLEWIKVGRFKWADEKGLTHMVTSQILETKGANHLFIFQRGRFLTPELRCFSTE
                     TKYVTMPPIFLPKQFNARLPIKKTTAQQLFLYVKSVKNVTERDIWAKMRQLLKTSELQ
                     DYNPREVTLLVNYFLLIARLRSETCFDNVLSGGMFKKLFKPFIAWWEIQKHKIFGNEE
                     FEQLMEALEWVDVTLTYPTKTFDNRGWVVKLEARRGYEWFADEMHKPKGPELNLEEKK
                     TDPDAASYEKYLKALSLLQKEPEVMEAKEAEATDEPQRPEVKEEQAEASTSGRAEEIQ
                     EDPATKKGKEEPNPNRDLLCPCGLHLKIKNAEFPELPVLDHPDHLTGRKAWFFSKDGK
                     PYSYTGGSHASRGWPNWLEKILAAIEIKEPLPEFNQCLVQQFKLQAAIPFHRDDEPCY
                     PKGHQVLTINHSGECLTQIACQKGKASITMGFGDYYLSPVGFQESHKHAVSNTTGGRV
                     SLTFRCTVQQNKFNDDGSMEALDNLPWKAWIPKLQNLGFQGRQLQYDPNGALISPIEE
                     IRSMPKCKPEGVPEVVYKTLDGLARAPTPYSPNPIRARAYTSDVKNCRIGALLRQQGK
                     EWGCRFDALVEAGKRELAISVIHGAGGSGKSQALQTLIKDNPELDITVVLPTNELRLD
                     WLRKLPKAPQEKFKTFEKALLAPPTPIVIFDDYGKLPAGYVEAFCLYFSTVQLIILTG
                     DCKQSVHHESNENATTSSIEPLVKEASELCRYYINATHRNKKDLANKLGVYSEKTGLT
                     EVTHGTTPIPGLHMLVPSLYKKQAFSEMGHKVSTYAGCQGITAPKIQILLTEETSLCS
                     REVLYTALSRAVHSIHFVNASPNNQAFWKKLECTPYLKAFLSTLREEVAQPIEEKKAE
                     PTPVEPPRTHIAKEDAMVEYENVIEKMPEKHEREIFSEKHGHSNCVQTEDPFIQMFSH
                     QQAKDDTLLWATIEARLVISNPKANWQEYLEKRPVGEVLFESYKRAMHLPKMPIPFEE
                     DLWNSSMHEVQKTYLSKPENMIKNGMARQSPDYDPNVISLFLKSQWVKKMEKLGAIKI
                     KPGQTIASFHQATVMLFGTMARYMRRMREVFQPAHIRINCEMTPEDLSSWAAGEGGHW
                     KFKGPSLANDFTAFDQSQDGAMLQFEILKARHHSIPEDILDAYLTIKTNSKIFLGTLA
                     IMRLTGEGPTFDANTECNIAFTHTKFNIPEGTAQLYAGDDSAIDGLPALRPSFKMIEQ
                     KLTLRSKPQVALQQKGDWAEFCGFRITPKGLIKDPKKLHASWMLEKKKGNVKNVLRSY
                     ELDLALAYQHKDSLHELLSEEELKYHYETVRSIVKSGGGGVLNTYISKDESLY"
     CDS             4727..5428
                     /product="ORF2 (26K protein)"
                     /codon_start=1
                     /translation="MNHFINLLVAEGFVRTNEPLTDQLVVHSVAGSGKSTLIRKFLEE
                     QPLARAYTHCRADPPNLEGRFIQPFKGPCPDHFNILDEYCKEPISAKFQVLIADPLQY
                     RTQHLRPHYVNHKSHRLGPETCKLLSSLGIKVESHRRDRDVVTLSGIFGSPILGQAIA
                     LDRSASDLLRAHGIQALCPIESIGQEYPVVTVVSSEPLRNVRFKDQVYIALSRHTEQL
                     HVLSPEFPHTTSRPQ"
     CDS             5382..5717
                     /product="ORF3 (12K protein)"
                     /codon_start=1
                     /translation="MSSHQNFLTPPPDHSKAILAVAVGVGLAIVLHFSLSYKLPSPGD
                     NIHSLPFGGTYRDGTKSIIYNSPHRGPGQSGALPIITVFAIIECTLHVLRKRDNPVRP
                     QHSDCPNCS"
     CDS             5653..5859
                     /product="ORF4 (7K protein)"
                     /codon_start=1
                     /translation="MFSGKEITLFALSTLIALIVLNYMSATPNPVCLIELTGHSAVLR
                     GNNCESLTSGVIEALSAHLHGLRN"
     CDS             5889..6536
                     /product="ORF5 (capsid protein)"
                     /codon_start=1
                     /translation="MSKSSMSTPNIAFPAITQEQMSSIKVDPTSNLLPSQEQLKSVST
                     LMVAAKVPAASVTTVALELVNFCYDNGSSAYTTVTGPSSIPEISLAQLASIVKASGTS
                     LRKFCRYFAPIIWNLRTDKMAPANWEASGYKPSAKFAAFDFFDGVENPAAMQPPSGLI
                     RSPTQEERIANATNKQVHLFQAAAQDNNFTSNSAFITKGQISGSTPTIQFLPPPE"
BASE COUNT     2009 a   1677 c   1513 g   1457 t
ORIGIN      5' end of viral RNA.
        1 gaaaagaaac acaaagcaaa gcaaagcaaa gcaactcaaa taaaccatat ttggccaagg
       61 cacttggtaa tcaaacgggc acaaccctag attaacgata tggcaaattt gaggagtgtt
      121 ttcgaacagt tgaacgacgt ctcactccgg gctgttattc aagaagaggc ctacagagac
      181 attaagctca ctattaagga aactaaaacc tacaatcctt atgcacatcc agtagcagta
      241 gcggatagtt tagaaaaatt aggaatagaa actaacccct ttgccgtcaa ggcgcatacg
      301 catgccgcgg caaagacaat agaattagat atgtacaaaa tagtttcttt ctacctccca
      361 aaggagaacc ccaccacctt tatgttcatg aagaggagca agttgcaata ttttagaaga
      421 ggcccacagc aaaaagatgt gttcctcaat gctcacatag aacccaaaga cgtggctagg
      481 tatgacgtgg acaccctttt tgacaagaac gtgaccccac agattaccac aaacacagcc
      541 tttatggggg ataccctcca ttttcttcca ctaacagcga ttgaaaggat ctttaaatcc
      601 tcccccaaac ttcaaaccct ctacgccact atggtactcc caccggaggc cctgcataga
      661 ctgcattctc tgcaccctgg tatatatgaa ttagaatttc accaagaaca tttcatctac
      721 aaaccagggg gtcatgctgg ggcagcgtac atccacaaat acgagcaact cgagtggatt
      781 aaagtgggaa ggtttaagtg ggcggacgag aaggggctca cccacatggt gacctcacag
      841 attttggaaa ctaaaggtgc caaccacctc ttcattttcc agagagggag gtttctgact
      901 ccagaattga ggtgtttcag cactgagaca aaatatgtca ccatgcctcc catcttcctc
      961 cccaagcagt ttaatgcccg gttgccaatt aagaaaacca ccgcccaaca attgtttctc
     1021 tacgtaaaat cagtgaaaaa tgtaacagag agggacatct gggcaaagat gagacagttg
     1081 ctcaagactt cggagctaca agattacaat ccaagagagg tgactctgct ggtgaactat
     1141 tttctcttga ttgccagatt aaggtcggaa acgtgttttg acaacgtcct cagcggggga
     1201 atgttcaaga aactcttcaa acccttcatc gcatggtggg agatccaaaa acacaaaatt
     1261 ttcggaaatg aggagtttga acagttgatg gaagctctgg agtgggtgga tgtaacactg
     1321 acctacccaa caaaaacttt tgacaatcgg ggttgggtgg ttaagctgga agcgaggagg
     1381 ggttacgagt ggttcgctga tgagatgcac aagccgaagg gtccagaact aaacttggag
     1441 gagaagaaaa cggatccgga cgccgcatcc tacgaaaaat acttgaaagc cctgagcctt
     1501 ttacagaaag aaccggaggt catggaagcc aaagaagcag aggcaacaga tgaaccccaa
     1561 aggcccgaag ttaaggaaga gcaggcagag gcttccacga gtgggagggc tgaagaaatt
     1621 caagaggatc cggcaaccaa gaaagggaag gaggagccga accccaatcg ggacctgctc
     1681 tgcccatgcg gactacatct aaagatcaaa aatgccgaat ttcctgaact tccggtactc
     1741 gatcatccag atcatctcac cggaagaaaa gcatggttct tctcaaagga tggaaagcca
     1801 tactcctaca caggaggctc acatgcatct cgaggctggc caaattggct ggagaaaatt
     1861 ttagccgcaa tagaaatcaa agagccactg ccggaattca accaatgctt agtccagcag
     1921 tttaaactcc aagcggccat cccattccac cgagatgatg aaccgtgtta tccaaagggt
     1981 caccaggttc tcaccatcaa ccactcaggg gaatgcctca cccaaatagc ttgccaaaaa
     2041 ggaaaggcaa gtataactat gggattcggt gactactact tgagcccagt gggattccaa
     2101 gagtcccaca agcatgcggt aagcaacacc acagggggaa gggtgtctct gactttcaga
     2161 tgcacagtcc agcaaaataa atttaatgat gatggaagta tggaagccct tgataacctt
     2221 ccttggaaag cgtggatccc gaaactgcaa aatttaggat tccaaggaag gcagcttcag
     2281 tatgatccta atggagcact gatcagcccc attgaggaaa ttcgaagcat gcccaagtgc
     2341 aagcctgaag gggttccaga agtagtttac aagacgctgg acggactagc ccgtgcgcca
     2401 actccatatt ctccaaaccc tatccgagct agagcataca cctcagatgt caaaaactgc
     2461 agaattgggg ccctgctaag gcaacaaggt aaggagtggg gatgcaggtt tgacgcattg
     2521 gtagaagctg gcaagagaga gttggccatc tccgtaattc acggagcggg aggaagcggg
     2581 aagtcacaag cattgcagac cctgattaag gacaacccag agcttgatat cacggtggtc
     2641 ctcccaacca atgaactcag gctggattgg cttcggaagt taccaaaagc cccgcaggaa
     2701 aagttcaaaa ccttcgaaaa ggcattgtta gctcccccca ccccaatagt catcttcgat
     2761 gattatggca aactaccggc aggctacgtg gaagccttct gcttgtactt ctccactgta
     2821 caactgatca tcctaaccgg agattgcaaa cagagtgtgc accatgaaag taatgagaat
     2881 gccacaacaa gctcaataga acccctggtt aaagaagcct cagagctttg caggtattac
     2941 atcaatgcca cacacagaaa taagaaagat ctggccaaca aactgggagt ttactcagag
     3001 aaaaccgggt tgaccgaagt gacccatggc accaccccga tccccgggct tcacatgcta
     3061 gtgccctcgc tttacaaaaa gcaagccttt tcagagatgg gacataaggt gtccacctac
     3121 gcgggctgtc aggggatcac cgctccaaaa atccaaatct tgctaacaga ggaaacctct
     3181 ctctgctcca gagaggtcct gtacactgca ctatcgaggg ccgtacattc aatccatttt
     3241 gtaaacgcga gcccaaacaa tcaggctttt tggaaaaaac tggagtgcac tccatacctc
     3301 aaggctttcc tgtcaacttt gagagaagaa gtggcacagc ctattgaaga gaagaaagct
     3361 gaacccactc cagtagagcc cccacgaaca cacattgcaa aggaagatgc aatggtggaa
     3421 tatgaaaacg tcatcgagaa aatgcctgaa aagcatgaaa gggaaatttt ctcagaaaaa
     3481 cacgggcaca gcaactgtgt tcaaaccgaa gaccccttca ttcagatgtt ttctcaccaa
     3541 caggcaaaag atgacaccct actttgggct accattgaag ccagattggt catctccaac
     3601 ccaaaggcca attggcaaga gtaccttgaa aagaggccag tgggagaagt gctgtttgaa
     3661 tcatacaagc gggccatgca cttgccaaag atgcccattc cctttgagga ggatctttgg
     3721 aactcgagca tgcatgaggt gcaaaagacc tacttgtcca agcctgaaaa catgatcaag
     3781 aatggaatgg ccaggcagag ccccgactat gacccaaatg tgatctccct gttcctgaag
     3841 tctcagtggg tgaagaaaat ggaaaaatta ggggcaataa agatcaaacc cggtcaaacc
     3901 atagcctctt ttcatcaagc cactgtaatg ctctttggaa ctatggcaag atacatgagg
     3961 agaatgcggg aagtcttcca acctgcccac atcaggatta actgtgagat gaccccggaa
     4021 gacctgagct cttgggcggc tggagaaggg ggacactgga agtttaaagg cccttcactt
     4081 gccaatgact tcacagcatt tgaccagtca caagatggtg ctatgctaca gtttgaaatt
     4141 cttaaagcta ggcaccactc catcccagag gacattttgg acgcgtacct cacgataaaa
     4201 actaactcaa agatattcct gggaacattg gcaataatga gattgaccgg tgaggggccc
     4261 actttcgacg caaacactga atgcaatatc gccttcacac acactaaatt caacattcca
     4321 gaaggcacag cacaattgta tgcaggggat gactcagcaa tcgatggttt gcctgcacta
     4381 agaccaagct ttaagatgat cgaacaaaag ctcaccttga ggtccaaacc ccaggtagcc
     4441 cttcaacaaa aaggagactg ggcagagttc tgtggcttcc gaatcacccc aaaagggctg
     4501 atcaaggacc ccaagaaact ccatgcctct tggatgctag aaaagaagaa ggggaatgtt
     4561 aaaaacgtat tgagatcata cgagcttgat ttggcgttag cataccaaca caaggatagc
     4621 ctgcacgaac tactttccga ggaggagctc aagtaccact acgagacggt tcgttccata
     4681 gttaagtcag gaggaggtgg agttttgaat acttacatct ccaaggatga atcactttat
     4741 taaccttctc gtagctgagg gatttgtcag gactaacgaa cccctcactg accaacttgt
     4801 agtccattcg gtagccggaa gtggaaagtc aaccctcatt aggaaatttc tggaggagca
     4861 accccttgca agagcataca cgcactgcag ggccgaccca cccaatctcg aggggaggtt
     4921 cattcagccg ttcaagggac cgtgtccaga tcatttcaac atactggacg aatactgcaa
     4981 ggagccaatc tcggccaagt tccaagtcct catagccgac ccgcttcaat acaggactca
     5041 acatctgcga cctcactacg tcaatcataa atcccacagg ttgggacctg agacttgcaa
     5101 actactgtcc agccttggaa tcaaggtcga aagtcataga agagaccgtg acgtggtgac
     5161 cctgagtggt atcttcggtt caccaatcct aggccaggct attgcgctag acaggtctgc
     5221 cagtgacctg ctaagagctc acggaatcca ggccctctgc cccatcgaat caattggcca
     5281 ggaataccca gtggtgacag tagtttcttc ggagcccttg agaaacgtga ggttcaagga
     5341 tcaagtgtac atagccctat ccagacacac tgaacagctc catgtcctct caccagaatt
     5401 tcctcacacc acctcccgac cacagtaagg ctatcttagc tgtagcagta ggagtaggtt
     5461 tagctatagt tctgcatttt tctctctctt ataagttgcc ctcaccaggt gataacattc
     5521 acagtcttcc ttttggaggc acgtacaggg acggaactaa atccattatt tacaactctc
     5581 cccacagagg accgggacag tcaggcgccc tgccaatcat tacggtgttt gccatcatcg
     5641 agtgtaccct ccatgttctc aggaaaagag ataaccctgt tcgccctcag cactctgatt
     5701 gccctaattg ttcttaacta catgtcagcg actcccaatc cggtgtgtct gattgaactc
     5761 acaggacata gtgctgttct aagaggaaat aactgtgaaa gcttaacatc aggtgttata
     5821 gaggccctat ccgcccacct acacgggctt aggaactagc ttcattcgaa attcaaaatt
     5881 ctgttttaat gtctaagtca agtatgtcca cacccaacat agccttcccc gccatcaccc
     5941 aggaacagat gagctcgatt aaggtcgatc caacgtccaa tcttctgccc tcccaagagc
     6001 agttaaagtc agtgtccacc ctcatggtag ctgctaaggt tccagcagcc agtgttacaa
     6061 ctgtggcatt ggagttggtc aacttctgct atgacaatgg gtccagcgcg tacaccacag
     6121 tgactggccc atcatcaata ccggagatat cactggcaca attggctagt attgtcaaag
     6181 cttccggcac ttcccttaga aaattctgcc ggtacttcgc gccaataatc tggaatctga
     6241 ggacggacaa aatggctcct gccaattggg aggcttcagg atacaagcca agcgccaaat
     6301 ttgccgcgtt cgacttcttc gacggggtgg agaatccggc ggccatgcaa cccccttcgg
     6361 gactaatcag gtcgccgacc caggaagagc ggattgccaa tgctaccaac aaacaggtgc
     6421 atctcttcca agccgcggca caggacaaca actttaccag caactccgcc ttcatcacca
     6481 aaggccaaat ttctgggtca accccaacca tccaattcct tccacccccc gaataaacac
     6541 acttgaccca gcccgttgtt tagcactatt tgttggggct attgagtttt caaaatgtgc
     6601 ttttgctata gtagacgaaa cttactacct agtttggttt tgcaaatttc ctttcc
//