From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Simian varicella virus tegument protein gene, complete cds;
Date: 22 Dec 92 22:57:25 GMT
Distribution: bionet
Checksum: 58491 12

LOCUS       SVVUS        5925 bp ds-DNA             VRL       30-NOV-1992
DEFINITION  Simian varicella virus tegument protein gene, complete cds;
            serine/threonine protein kinase genes, complete cds; membrane
            glycoprotein genes, complete cds's.
ACCESSION   L07067
KEYWORDS    membrane glycoprotein; serine/threonine protein kinase;
            tegument protein.
SOURCE      Simian varicella virus kidney DNA.
  ORGANISM  Simian varicella virus
            Viridae; ds-DNA enveloped viruses; Herpesviridae;
            Deltaherpesvirinae.
REFERENCE   1  (bases 1 to 5925)
  AUTHORS   Fletcher,T.M.III. and Gray,W.L.
  TITLE     DNA sequence and genetic organization of the unique short (Us)
            region of the simian varicella virus genome
  JOURNAL   Unpublished (1993)
  STANDARD  full automatic
FEATURES             Location/Qualifiers
     repeat_region   1..512
                     /rpt_type=inverted
                     /standard_name="IRs"
                     /citation=[1]
                     /note="internal repeat sequence; putative"
     misc_feature    513..5416
                     /standard_name="US"
                     /citation=[1]
                     /note="SVV unique short sequence; putative"
     repeat_region   5417..5925
                     /standard_name="TRs"
                     /citation=[1]
                     /note="inverted; terminal repeat sequence; putative"
     CDS             complement(550..783)
                     /standard_name="SVUS1 ORF"
                     /citation=[1]
                     /note="homolog of HSV-1 US9 and VZV US1; putative"
                     /product="tegument protein"
                     /codon_start=1
                     /translation="MADKSDSEAVALLMEAIVTTPDTNSEPQYQSQHRDLQECYYSDS
                     DNEKATEFLRRIGKHQHKKKNSVKKRVTFLVYF"
     CDS             1223..2260
                     /standard_name="SVUS2 ORF"
                     /citation=[1]
                     /note="putative"
                     /product="serine/threonine protein kinase"
                     /codon_start=1
                     /translation="MNYDDDCLYEDKHMDTDIYDMLADEDTSDVDNTLAVCATARAGI
                     EKAGFSVLETFTPGAEGFTFACIENKTRENVVIKAGQRGGTVTEAHILRNINHPVIIR
                     LMGTFTYNSFTCLVLPRYKTDLYCYLSDRRRIAICDMLSIERSVLRAIQYLHENRIIH
                     RDVKAENIFINHPGDVCLGDFGAACYPVDITQNKYYGWAGTIATNAPELLARDPYGPA
                     VDIWSAGIVLFEMATCHDSLFEKDGLDGDCDSDRQIKLIIRRTGVHPSEFPIDAQATL
                     DEIYRTCQKTSRKPGTRPTWTNLYELPLELEYLICKMLAFDAHKRPSAKALLDFAAFY
                     DIPDPYPNPTN"
     CDS             2491..3552
                     /standard_name="SVUS3"
                     /citation=[1]
                     /note="homolog of HSV-1 gI and VZV gpIV (ORF 67);
                     putative"
                     /product="membrane glycoprotein"
                     /codon_start=1
                     /translation="MLLWYTTASIMRYLMVFMLFGIQCAAAIIYRGNYISLYVNSSAT
                     SIFLKGNNNDASIRGRFLFIGDQFPVTNTYNVTVELLHVNQTTLCLQPLYRVMYGECP
                     RIRTGAIIACRVKRSWHYENATQLTDPNVEIIFKMNNTKVEDAGIYLLVVQLDYTSLF
                     DIFFVSLNVYPKQDTSNEDVNYFPPVYSPSHILNTFKICHKFPVHNGMEQSILQHIVT
                     SDVDTETENLSWQKDDLGSTQKPRKNFNPDVKVNVTHETRKTLMESSADVFMIAVPIT
                     ASLLVILAIIIVVTVGIYRRRSSEKRKIYRPKRTKEQASTEKRERSESDVLLEAAVAR
                     LETIQEENPPHSVINPFTK"
     CDS             3772..5586
                     /standard_name="SVUS4"
                     /citation=[1]
                     /note="homolog of HSV-1 gE and VZV GPI (ORF68); putative"
                     /product="membrane glycoprotein"
                     /codon_start=1
                     /translation="MRMTVVKHVMLTLICGTLSWGVQINTLAYASAIKSEDGFDMDED
                     GVYGDDIQDYINAAYTHERPFIQDKSKHKMETYTQSLLHTDLETDSQISRERGNYINA
                     QELGDGNNEHVDLVNRTMTKNVLMKHGHRNFMDASILYKSVHGITHLHAHQRPTEVSV
                     AENQQLLLKVHIPQENEHTYTERWSFLPAAPCKLTPPSIQQVCIKHGACIHDVVVDVD
                     CIAESMEHTLVEIGYVVHASKAVHPTWTVVNITEDFANYGFDTPDVKPGVLKFEHMNA
                     HHAGVYIWNLQGTHGENMYVTFLVKLNNSIENHIDLPAVTPKPKGAEFHTWHYHSHVF
                     SVGETFSLPMHLQYKIHDTPFDLLLEWLYVPINPTCQPMRLYSACVYHETVPSCLSPE
                     NPECTFASPHIARRVANTVYQNCEHVNYTADCLAVSHVEPGSGLEIQNGGSALLFVNA
                     AESMSGLYVFIIHFNGHVETVAYTVVSTIENFVNAIEEHGFPPEIHNVPSPSSPNVTA
                     NNDVISETNTFPFKTYAGITGGFAVLALVCLALALVCTKRKFGHRSYWSDKAAYGQST
                     YYAGVPVDDFEDDTEVEVDEGAECGGSGYTVYIDKRTR"
BASE COUNT     1775 a   1202 c   1232 g   1716 t
ORIGIN      
        1 gatcccccga cgcacgcaga actcagtgat aggcttgttt taatgtccta ctggtgttgt
       61 ttagggcatg ccggaacgag actttacgat cagccgcccg ataagttgtg tatacgcgcg
      121 ttcgtgtata atcgtcgggg cggtatatgc catagactgt ttgacgcgta cctcggatgt
      181 ggagtatatc cggaaagtgg acgagaccgc aacataaaac acgatgaatg gccacgtcta
      241 gaatgttaat gtgatgaggg ggtgggatgt aatgggggtg taataaagca cacgcaaaag
      301 gcagttgtac ggtgaatgct tccgttttat tttaacgcga cattatcggg ttctcttatc
      361 aatgtaaacc gtgtatccag acccgccgca ctccgcgcct tcgtctacct caacttcggt
      421 gtcgtcctca aaatcgtcca ccggtacgcc cgcgtaatac gtgctctgtc cgtacgctgc
      481 tttatcggac cagtagcttc gatgtccaaa ctccacaaaa aaatgacagt gttgtaatac
      541 ttaatacacc taaaagtaaa ccaaaaatgt aacacgcttt tttacggagt tttttttttt
      601 gtgttggtgt tttcctattc gacgtaaaaa ttcggtagct ttctcattat cactgtcgct
      661 atagtaacat tcttgcaaat ccctatgttg ggattgatat tgaggttcag agttggtgtc
      721 aggggttgtt actatggctt ccattaacaa cgctacggcc tcactatcgc ttttatctgc
      781 cataatacaa acggtacaga atagtttact ccttgtaata ccgcagctac aacgtacaca
      841 tagagcggtt atatgtatac cttttccacg tgacattgag tacgtcatgt gatattttcc
      901 attccactta atttccacgc ctttttatta catcatgtga agttctacat accagtgatt
      961 tccacgcctt tttgtttatt tacgccttcc gcattctaaa taagtggtgt tttataaatc
     1021 ccctgcttca ttggttttaa tcactattac tatacattca cgtttatgta cacaccttat
     1081 gctttgtagg cgtggtatca tgtctaccat atgtgctctt actagtttaa gcgaccaagg
     1141 caaggtgcat ggcaacgcct ctcatgttcc aaatatgcta cagcggcaac aatttgtgtg
     1201 tgattcaaca ttcgtatcta acatgaacta tgacgatgac tgtttatacg aagacaaaca
     1261 tatggataca gatatatacg atatgcttgc ggatgaagac acctcggatg ttgataacac
     1321 gttagcggta tgtgccactg ccagagccgg gattgagaaa gcaggatttt cggtactgga
     1381 aacatttact ccaggagcgg aaggtttcac ttttgcatgt atagaaaata aaacacgtga
     1441 aaacgtggta ataaaagcag gacagagagg tggcactgtt acggaagctc acattctacg
     1501 aaacattaac cacccggtaa tcatacgctt aatgggcact tttacataca acagttttac
     1561 atgtttggta ctgccacgat acaaaaccga tttgtattgt tacctgtctg atagacggcg
     1621 tatagcaatt tgtgatatgc tgtccattga acgctccgtt ctgcgtgcaa ttcagtatct
     1681 tcatgaaaat cgaataatac atcgagatgt taaggcagaa aacatattta taaatcatcc
     1741 aggtgatgtc tgcttaggag attttggcgc agcctgctat cccgttgata ttacacagaa
     1801 caaatattac ggatgggcag gtacaattgc tactaacgca ccggaacttc ttgcaaggga
     1861 tccatacggc ccggccgtcg atatttggag cgcaggaata gtattatttg aaatggcaac
     1921 atgtcacgat tcgttgtttg aaaaagatgg acttgatggg gattgtgata gtgacagaca
     1981 aataaaactt attattagga ggactggagt tcatcccagt gaatttccta tagatgcgca
     2041 agcaacctta gacgaaatat ataggacatg ccagaaaacg tctcgtaaac ccggaacccg
     2101 accgacatgg acaaatttgt atgaacttcc tttggagtta gagtatttaa tttgtaaaat
     2161 gttggcattt gacgcacata aacgcccatc ggccaaagcg ctactcgatt tcgctgcttt
     2221 ttatgatata ccggacccat atcccaaccc aactaattag cctataacgc ttatcactga
     2281 atataccgta acacgtctaa ttaaaatata aatgggaaat tactaaggtc tatgtaaacc
     2341 tattgttaga taggaaccaa taaaaaattg attattcagt cacgcccagt taaattgaag
     2401 ataaaacaga agcccggttg ttaactataa cagtagcgct tcaagctgtc ccctcccctg
     2461 gattttgttt tgttctgccg tctcacgtaa atgctgctct ggtacacaac agcatctata
     2521 atgaggtatt taatggtgtt tatgttattt ggtatacagt gcgccgcggc aattatttat
     2581 agggggaact atataagctt gtatgttaat agtagcgcga cttccatatt tctaaagggg
     2641 aataacaatg atgcatctat ccgaggacgt tttttattta ttggtgacca gttccccgta
     2701 acaaatactt acaatgtaac cgttgaactt ttacatgtta accaaaccac gttgtgttta
     2761 caacccttat accgtgttat gtatggtgaa tgtccacgta ttcgcactgg tgcaattatt
     2821 gcatgtcgtg ttaaacgatc atggcattat gaaaatgcaa cacagttaac tgacccaaat
     2881 gtagaaatta tatttaaaat gaataataca aaagtggaag acgctggaat atatttgctt
     2941 gttgttcaac tggactatac ctcactgttt gacatttttt ttgtctcatt aaatgtatat
     3001 ccaaagcaag atactagtaa tgaagacgtt aattactttc cgcctgtata ttctccgagt
     3061 catattttaa acactttcaa aatctgccat aaatttccag tacataatgg tatggaacag
     3121 tctatcttgc agcacattgt tacgtctgat gtggatacag aaacggaaaa tttaagttgg
     3181 cagaaagatg atttgggttc aacacaaaaa ccgagaaaaa actttaaccc cgatgtcaaa
     3241 gtaaacgtta cgcacgaaac aagaaaaact cttatggaat catccgcaga tgtatttatg
     3301 attgctgttc ctataacagc atcattgctt gttattctag ctataattat tgttgttacc
     3361 gttggtatat atagaagacg tagttcagag aagcggaaaa tttatcgtcc caaacgtact
     3421 aaagaacaag catctactga aaaacgggaa cgatctgagt cggacgttct gctagaggct
     3481 gcggttgcgc gcttagaaac tattcaagag gaaaaccctc cacattcagt aataaatcct
     3541 ttcacaaaat aatcttattg ccagtctttt tattctgtac tataatcgtc accgtctata
     3601 atctgacttc tgattgagtg atttatacac gcccacatgt gaatgggcgt gtatttttgt
     3661 aaagccttaa agcctgcact gtgaaattac aaacagtttg tagtgtttca ccccaggcgt
     3721 agaaaacgta taaaaccacg ggctatttac aaaccgccta aacggcaata tatgagaatg
     3781 accgtggtaa aacatgtaat gttaacgtta atctgcggaa cactatcatg gggtgtacag
     3841 ataaatacct tagcatatgc atcagctata aaaagcgaag atgggtttga tatggacgaa
     3901 gacggtgtat atggcgatga tatacaggat tatataaacg cggcatatac acatgaaagg
     3961 ccttttatac aagataaatc aaaacataaa atggaaacat acacacaatc gttacttcat
     4021 acggatttgg aaacggatag tcaaatttcg cgtgaacgag gaaattatat aaacgcgcaa
     4081 gaattgggag atggaaacaa tgaacacgtt gatttggtaa accgcacgat gacaaaaaac
     4141 gtattaatga aacacggaca tcgaaatttt atggatgctt ctatattata taaatcagtc
     4201 catggaatta cccatttaca tgcgcaccaa agacctactg aagtttctgt tgcagaaaac
     4261 cagcagttac ttttaaaagt acatattcca caggaaaacg aacatacgta taccgaacga
     4321 tggagctttc tccctgcagc accctgcaag ttaacccctc catcaataca acaggtgtgt
     4381 ataaaacatg gagcttgtat tcacgatgtt gttgttgatg ttgattgtat tgcagagagt
     4441 atggagcaca cactggtgga aattggatat gttgtgcatg cgagtaaagc tgtacatcca
     4501 acgtggactg ttgtaaacat aactgaagat tttgctaact atggctttga caccccagat
     4561 gtcaaacccg gtgtgttaaa atttgaacat atgaacgctc atcacgcagg ggtgtatatt
     4621 tggaatttac aaggaacaca cggcgagaat atgtacgtaa cgtttttagt gaaactgaat
     4681 aatagtatag aaaatcacat agatttaccg gctgtaacac ctaaaccaaa gggcgcagag
     4741 tttcatacgt ggcattacca ttctcatgta ttttctgtgg gtgagacctt cagcttacca
     4801 atgcacttac aatataaaat ccatgacacg ccgtttgact tattgttgga gtggttatat
     4861 gttccgatta atccaacatg tcagcctatg cggttatact ctgcgtgtgt atatcatgaa
     4921 actgttccct cgtgtttgtc ccccgaaaat ccggaatgta cgtttgcttc tccacatatc
     4981 gcaagaaggg ttgccaatac cgtttatcaa aactgtgagc atgtaaatta cacggcggat
     5041 tgtttagcgg tatcacatgt ggaaccgggt tccggattgg agattcaaaa tggtgggtca
     5101 gcattattat ttgttaacgc cgcggagagc atgtctggct tatacgtgtt tattattcac
     5161 tttaacggtc acgtagaaac cgtggcctat actgtggtat ctactataga aaacttcgtc
     5221 aatgcaatag aggaacatgg tttccctcca gaaatacata atgtaccgtc tccatcatcg
     5281 cccaatgtta cggcaaataa tgatgttatt agtgaaacca acacctttcc gtttaaaaca
     5341 tatgcgggta taacaggggg gtttgcagtg cttgcgttgg tatgtttggc gcttgcattg
     5401 gtttgtacta aaagaaagtt tggacatcga agctactggt ccgataaagc agcgtacgga
     5461 cagagcacgt attacgcggg cgtaccggtg gacgattttg aggacgacac cgaagttgag
     5521 gtagacgaag gcgcggagtg cggcgggtct ggatacacgg tttacattga taagagaacc
     5581 cgataatgtc gcgttaaaat aaaacggaag cattcaccgt acaactgcct tttgcgtgtg
     5641 ctttattaca cccccattac atcccacccc ctcatcacat taacattcta gacgtggcca
     5701 ttcatcgtgt tttatgttgc ggtctcgtcc actttccgga tatactccac atccgaggta
     5761 cgcgtcaaac agtctatggc atataccgcc ccgacgatta tacacgaacg cgcgtataca
     5821 caacttatcg ggcggctgat cgtaaagtct cgttccggca tgccctaaac aacaccagta
     5881 ggacattaaa acaagcctat cactgagttc tgcgtgcgtc ggggg
//