From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Caenorhabditis elegans transposable element Tc4, complete cds.
Date: 28 Aug 92 10:00:30 GMT
Distribution: bionet
Checksum: 02662     9

LOCUS       CELTC4X      3483 bp ds-DNA             INV       28-AUG-1992
DEFINITION  Caenorhabditis elegans transposable element Tc4, complete cds.
ACCESSION   L00665
KEYWORDS    transposable element.
SOURCE      Caenorhabditis elegans (strain Bristol x Bergerac) (library: NJ294)
            DNA.
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
            Rhabditina; Rhabditoidea; Rhabditidae.
REFERENCE   1  (bases 1 to 3483)
  AUTHORS   Li,W. and Shaw,J.E.
  TITLE     A variant Tc4 transposable element in C. elegans could encode a
            novel protein
  JOURNAL   Unpublished (1992)
  STANDARD  full staff_review
FEATURES             Location/Qualifiers
     repeat_unit     order(618..775,844..1001)
                     /rpt_type=INVERTED
                     /note="position 618 to 775 repeated as an inverted repeat
                     at position 844 to 1001"
                     /evidence=EXPERIMENTAL
                     /citation=[1]
     repeat_unit     order(1..139,3345..3483)
                     /rpt_type=INVERTED
                     /note="position 1 to 139 repeated as an inverted repeat at
                     position 3345 to 3483"
                     /evidence=EXPERIMENTAL
                     /citation=[1]
     CDS             join(1175..1387,1435..1720,1764..1902,1961..2582,
                     2626..2979)
                     /note="putative"
                     /codon_start=1
                     /translation="MSFDIGNVMFALHRHFPNPLPSNPSISRHEQKVADHLASIIKES
                     YYGDTSVEESEYLVQEEYGDWEPEVFEPYDCVLPDQDDVLFGEKAVSREELDKAITFY
                     RSGKIGSRPITTMHHSYRWIRTDAHMNKLRKYEKDKKAFQESVRVRLAQLTQRLYEEV
                     KEKLDNGVNLHDSDLMAMALEINTREMKLQKQNEMKLQKASQSWITRWKQSHRIVSRR
                     VTKFVTRKCLINKDAIKKNADDFVKNARTEISNYHPSMVFNCDQTGIQKELYPARSLA
                     FMGEKTVERLAQSKSSLTHSFTFLPMIFLDGSMGPKAFMVIAEPKGQFPPSRPIPNCP
                     NLEVRAGYKTHIMTKQLMCDFFESCVFIPSVPKKLYIMLDSWPAFKDHTTIKNLVPNG
                     HDVVIRNIPEHTTGMIQPLDVYWNAPWKSLIKKFTAYALRTQTDYVIAQRNNAICMVS
                     VLYHQISAEHFRPFLQHCWKKAGYVGAANTSSTPFLTPAQYCIDHGDTVICYHTGCNH
                     LGFIRCARCKMFVCFNHFVVSKQHLCSSP"
                     /citation=[1]
     exon            922..1387
                     /number=1
                     /product="hypothetical"
                     /evidence=EXPERIMENTAL
                     /citation=[1]
                     /partial
     5'UTR           922..1174
                     /evidence=EXPERIMENTAL
                     /citation=[1]
                     /partial
     intron          1388..1434
                     /number=1
                     /evidence=EXPERIMENTAL
                     /citation=[1]
     exon            1435..1720
                     /number=2
                     /evidence=EXPERIMENTAL
                     /citation=[1]
     intron          1721..1763
                     /number=2
                     /evidence=EXPERIMENTAL
                     /citation=[1]
     exon            1764..1902
                     /number=3
                     /note="sequence of cDNA clone has alternate sequence in
                     thisexon:position 1837 to 1859 replaced by CTTC."
                     /evidence=EXPERIMENTAL
                     /citation=[1]
     intron          1903..1960
                     /number=3
                     /evidence=EXPERIMENTAL
                     /citation=[1]
     exon            1961..2582
                     /number=4
                     /evidence=EXPERIMENTAL
                     /citation=[1]
     intron          2583..2625
                     /number=4
                     /evidence=EXPERIMENTAL
                     /citation=[1]
     exon            2626..3003
                     /number=5
                     /evidence=EXPERIMENTAL
                     /citation=[1]
     3'UTR           2980..3003
     polyA_signal    2986..2991
                     /note="putative"
     polyA_site      3002..3003
BASE COUNT     1065 a    620 c    685 g   1113 t
ORIGIN
        1 ctagggaatg accagaataa atggagcgat attcaaaaaa aatatattgt atcggaaagc
       61 tggcattctc tactataaga atatgactga aatttttgcc cgttcgggct ggaaatctga
      121 aatttttacg tctgaaattc tacactgaaa tcagtgcatt tcctatggtt aacagtggat
      181 ttttgtctct ggcgccaaca gaagtctcac cacaatggtg gaagggcgaa aacatcggtt
      241 cggtggtcga gtggtgaacg cgttcgcctc ttgagcagaa gtttgtgggt tcggttccca
      301 tacatggttt aacttttggc cttttttata caaaattttc agaacgggaa acaagtattt
      361 agaacatttt tttgagggtt ttacataatt tttttgcttt ttaattgaac cataattacc
      421 ctggaaactt ttcagaaatt ttaatttttt tcgaaaattg tcactttttt ctccaccaaa
      481 cccatgagaa aatttgatcg aaaaattttt ttttgaaatt tttttaaaaa tgcatgaaat
      541 attttagagt gtcacaaata acctattttt cattattttc aatgaccgaa tcattgattc
      601 tgatgcctta tcaagacgtt ttaccaaatc gatattggca aaacatcttg tttttgaggc
      661 tccatatctc tgcaggaaaa aatcgcacta aaaagtgatc aactagaaac ttgttaaaca
      721 caatgtgatc taaaacattt cagttgaaca cttttttgta aaaaatttcg ttgccgagtt
      781 ggaaccaatt gatttgagct tcattatttt tgaatattct aaatagttaa agatctatat
      841 cttggcaacg aaatttttta caaaaaagtg ttcaactgaa aagtttcaga ttacattgtg
      901 tttaacaagt tttcagttaa tcacttttta gtgcgatttt ttcctgcaga gatatggagc
      961 ctcaaaaaca agatgttttg ccaatatcga tttggtaaaa ctttatttta attttttttt
     1021 ttcatattat tgtttttata ttgggtcaaa acgtatttgc tctgctaaat agttagctgg
     1081 cgctaatttt taattttatt attttcgtat tttgataaat ttcactgaaa ttgtcacttt
     1141 aatagtttac attctattgg ttttctttta ttcaatgtct tttgatatcg gaaacgtgat
     1201 gtttgccttg catcgtcatt ttcccaatcc cctcccatca aatccctcga tttcgagaca
     1261 tgagcagaag gtggcagatc atttggcaag cattataaag gaatcttatt atggagatac
     1321 cagtgtggaa gaatccgaat atttggttca agaagaatat ggcgattggg agccagaagt
     1381 ttttgaggta tgttggtttc gacactatta attgtcattt aaaaaacctt tcagccgtat
     1441 gactgtgtgt tgccggatca agatgatgta ttgttcggtg agaaagctgt atcaagggaa
     1501 gagttggata aagcgatcac cttctaccgt agcggaaaaa ttggaagtag gccgataacg
     1561 actatgcacc atagttatcg ctggatacga accgatgctc atatgaacaa actgcgcaag
     1621 tacgagaaag ataaaaaagc gttccaagaa agcgtgcggg ttcgtttggc acagcttaca
     1681 caacggcttt atgaggaggt caaggagaaa cttgataatg gtaacgaaca ttaatataac
     1741 aagttttaat ataaatattt caggagtcaa tttgcatgat tctgatttga tggctatggc
     1801 actggaaatc aacacccgcg aaatgaagtt gcaaaaacaa aacgaaatga agttgcaaaa
     1861 agcgtcacaa tcctggataa cccgatggaa gcaaagccac aggtatgtaa taaattgcgg
     1921 agtatgttag atatatatat atatatatat ataatttcag aatcgtgagt cggagagtca
     1981 ccaagtttgt cacacggaag tgcctgatca ataaagacgc tatcaaaaaa aacgcggatg
     2041 attttgtcaa gaatgccaga acagagatct ccaactatca cccgtcgatg gtcttcaatt
     2101 gtgaccaaac cggaattcaa aaggagctgt atccagcccg gtctttagct tttatgggcg
     2161 aaaaaacagt cgagaggttg gcgcaatcga aatcgtcgct gacccactcg tttacgtttc
     2221 tcccgatgat tttcctcgat ggctcaatgg gacccaaggc gtttatggta atcgctgaac
     2281 caaaaggcca gtttcctccg tctcgtccaa ttccaaactg cccaaatttg gaagtgcggg
     2341 ctggatacaa gacacacatc atgacgaagc aattgatgtg cgattttttc gaaagttgtg
     2401 tcttcattcc gtctgtaccg aaaaaactgt acatcatgct ggacagttgg ccagcgttca
     2461 aggaccatac aacgatcaag aacttggttc ccaatggtca tgatgtcgtc attcgcaaca
     2521 ttccagagca cacaactgga atgatccaac cgttggatgt ctattggaat gcgccatgga
     2581 aggtatgaat ttaaatcttt ataacttttt gatagtattt tccagagctt gatcaagaag
     2641 ttcacagcat atgcccttcg aacccagacg gattacgtca tcgcacagag gaacaacgca
     2701 atttgcatgg tatctgtgtt gtatcaccag atctcggcag agcacttccg accgttttta
     2761 cagcattgtt ggaagaaagc tggatacgtg ggtgctgcga atacttcatc aacaccattt
     2821 ttgactccag ctcaatattg cattgatcat ggtgacacag tgatttgcta tcacactgga
     2881 tgtaaccatc tcggattcat ccgatgcgca agatgcaaga tgtttgtttg ttttaatcat
     2941 tttgttgtgt caaaacaaca tctttgttca tctccttgaa taattaataa attcatgatt
     3001 gcattacatt caagtttcgc tatgaataaa attgtttata tgaggggatc catggttgta
     3061 gtggtccatg gttaagttta aattttaggg gaaaagatgt tgaatgaatc attatggtgt
     3121 tggtcgacac attgatcatg ctgatatcga tcagaaaaat taaaatttgg gcttttatat
     3181 agtttcgaaa aaacacgttt aaatttttga aaaactttac gttagggtgg aattgaaccc
     3241 cagagtccca ccatgcttgt catccactct atccactcgg ccatctcgct gttgcaggca
     3301 gtactaattg gggatggtga taagtaaagc acgtcaaaac gaataatttc agacgtaaaa
     3361 atttcagatt tccagcccga acgggcaaaa atttcagtca tattcttata gtagagaatg
     3421 tcagctttcc gatacaatat tttttttttg aatatcgctc catttattct ggtcattccc
     3481 tag
//