HDTenEightyP/NetNews huggingface dataset:
From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Human immunodeficiency virus type 1 (Uganda 3117d/1990), partial
Date: 15 Sep 92 10:04:09 GMT
Distribution: bionet
Checksum: 00474     2

LOCUS       HIV3117D      243 bp ss-RNA             VRL       15-SEP-1992
DEFINITION  Human immunodeficiency virus type 1 (Uganda 3117d/1990), partial
            env cds, V3 loop.
ACCESSION   M98957
KEYWORDS    .
SOURCE      Human immunodeficiency virus type 1 (individual_isolate Uganda
            3117d/1990) - - - RNA.
  ORGANISM  Human immunodeficiency virus type 1
            Viridae; ss-RNA enveloped viruses; Positive strand RNA virus;
            Retroviridae; Lentivirinae.
REFERENCE   1  (bases 1 to 243)
  AUTHORS   Albert,J., Franzen,L., Jansson,M., Scarlatti,G., Kataaha,P.K.,
            Katabira,E., Mubiro,F., Rydker,M., Rossi,P., Pettersson,U. and
            Wigzell,H.
  TITLE     Ugandan HIV-1 V3 loop sequences closely related to the
            U.S./European consensus
  JOURNAL   Unpublished (1992)
  STANDARD  full automatic
FEATURES             Location/Qualifiers
     CDS             <1..>243
                     /product="envelope protein"
                     /gene="env"
                     /codon_start=2
                     /translation="NGSLAEEEIMIRSENITNNAKNILVQFNETVQINCTRPNNNTRK
                     SVRIGPGQTFYATGDIIGNIRQAHCNISGAKWNKTL"
BASE COUNT      111 a     38 c     43 g     51 t
ORIGIN
        1 aaatggcagt ctagcagaag aagagataat gattagatct gagaatatca caaacaatgc
       61 caaaaacata ctagtacaat ttaacgagac tgtacaaatt aattgtacca gacctaacaa
      121 caatacaaga aaaagtgtac gtataggacc aggacaaaca ttctatgcaa caggtgacat
      181 aatagggaat ataagacaag cacattgtaa cattagtgga gcaaaatgga ataaaacttt
      241 aca
//
From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Human DNA sequence, exon.
Date: 11 Sep 92 10:04:27 GMT
Distribution: bionet
Checksum: 08498     1

LOCUS       HUMEX         250 bp ds-DNA             PRI       11-SEP-1992
DEFINITION  Human DNA sequence, exon.
ACCESSION   M80300
KEYWORDS    .
SOURCE      Homo sapiens DNA.
  ORGANISM  Homo sapiens
            Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
            Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
REFERENCE   1  (bases 1 to 250)
  AUTHORS   Dekker,J.W., Croft,L. and Easteal,S.
  TITLE     Nucleotide sequence of a novel HLA-DPB1 allele
  JOURNAL   Immunogenetics 36, 341-343 (1992)
  STANDARD  full staff_entry
FEATURES             Location/Qualifiers
     exon            1..250
BASE COUNT       60 a     58 c     94 g     38 t
ORIGIN
        1 agaattacgt gtaccagtta cggcaggaat gctacgcgtt taatgggaca cagcgcttcc
       61 tggagagata catctacaac cgggaggagc tcgtgcgctt cgacagcgac gtgggggagt
      121 tccgggcggt gacggagctg gggcggcctg aggcggagta ctggaacagc cagaaggaca
      181 tcctggagga ggagcgggca gtgccggaca ggatgtgcag acacaactac gagctggacg
      241 aggccgtgac
//
From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Equine herpesvirus type 1 TK gene for thymidine kinase
Date: 11 Sep 92 10:04:03 GMT
Distribution: bionet
Checksum: 30377     3

LOCUS       HSE1TK       1059 bp ds-DNA             VRL       11-SEP-1992
DEFINITION  Equine herpesvirus type 1 TK gene for thymidine kinase
ACCESSION   X67961
KEYWORDS    thymidine kinase; tk gene.
SOURCE      Equine herpesvirus type 1 DNA.
  ORGANISM  Equine herpesvirus type 1
            Viridae; ds-DNA enveloped viruses; Herpesviridae;
            Alphaherpesvirinae.
REFERENCE   1  (bases 1 to 1059)
  AUTHORS   Corrochano,L.M., Madueno,F., Field,H.J. and De la Fuente,R.
  TITLE     DNA sequence analysis of thymidine kinase defective mutants of
            equine herpesvirus-1 (EHV-1)
  JOURNAL   Unpublished (1992)
  STANDARD  full automatic
COMMENT     *source: strain=Ab4;
            From EMBL    entry EH1TK;  dated 26-AUG-1992.
FEATURES             Location/Qualifiers
     CDS             1..1059
                     /product="thymidine kinase"
                     /gene="TK"
                     /codon_start=1
                     /translation="MAARVPSGEARRSASGAPVRRQVTIVRIYLDGVYGIGKSTTGRV
                     MASAASGGSPTLYFPEPMAYWRTLFEADVISGIYDTQNRKQQGDLAADDAASITAHYQ
                     SRFTTPYLILHDHTFGLFGGDSLQRGTRPDLTVVFDRHPVASAVCFPAARYLIGDMSM
                     CALIAMVATLPREPQGGNIVVTTLNVDEHVRRLRTRARIGEQIDMKLIATLRNVYSML
                     ANTSNFLRSGRVWRDGWGELPLSCETYKHRATQMDAFQERESPELSDTLFAMFKTPEL
                     LDDRGVILEVHAWALDALMLKLRNLSVFCADLSGTPRQCAATVESLIPLMSSTLSDSE
                     SASSLERAARTFNAEMGV"
BASE COUNT      224 a    306 c    308 g    221 t
ORIGIN
        1 atggcggctc gcgtaccttc cggggaagct cgacggagcg ccagcggggc gccggtcagg
       61 cggcaagtaa caatagttag aatttacctc gatggggtct acggcatcgg caagagcacg
      121 actggacgag ttatggcatc ggctgcgagt ggaggaagtc caactctata ctttcctgag
      181 cctatggcgt actggcggac tctctttgaa gcggacgtaa ttagtggtat ttacgacacc
      241 cagaaccgga aacagcaggg agatttggcg gctgatgacg cggcgtcaat aacggcgcac
      301 taccagagcc gctttaccac gccctacctt atcctacacg atcacacatt tgggttgttt
      361 gggggtgaca gcctacagcg tgggacaaga ccagacctaa ccgtcgtttt tgaccgccac
      421 ccagtcgcct ctgccgtgtg ctttcccgcc gctcgctacc tcatcggaga catgtccatg
      481 tgcgcgctga ttgccatggt tgccacccta cccagggaac cgcaaggcgg aaacatcgtg
      541 gttaccaccc tcaatgtgga cgagcacgtg cgaagactgc gcacccgcgc cagaatcggg
      601 gaacagattg acatgaagct aatcgccaca ctgcgaaacg tgtactctat gctcgctaat
      661 actagcaact ttttgcgctc cgggagagta tggcgcgacg gctgggggga gttgcccctt
      721 tcgtgcgaga cctataaaca tcgcgcaacg cagatggacg ccttccagga gcgcgaatct
      781 cctgagctga gcgacacgtt gtttgccatg tttaagactc ccgagctgct agacgatcgt
      841 ggagtgatat tggaagttca cgcctgggcg cttgacgcgc tgatgctaaa gctgcgcaac
      901 ctgagtgttt tttgcgctga tctgagcggg actccgcgcc agtgtgctgc aaccgtggag
      961 tctctaatac ccctcatgag cagcaccctc tccgattcgg agtcggcctc ctccctggag
     1021 cgggccgcgc gcaccttcaa cgccgagatg ggcgtctga
//
From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: C. elegans cDNA clone cm13a5; 5' end, single read
Date: 10 Sep 92 10:16:07 GMT
Distribution: bionet
Checksum: 44946     2

LOCUS       CEL13A5       267 bp ds-DNA             INV       10-SEP-1992
DEFINITION  C. elegans cDNA clone cm13a5; 5' end, single read
ACCESSION   Z14402
KEYWORDS    expressed sequence tag.
SOURCE      Caenorhabditis elegans DNA.
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
            Rhabditina; Rhabditoidea; Rhabditidae.
REFERENCE   1  (bases 1 to 267)
  AUTHORS   Waterston,R., Martin,C., Craxton,M., Huynh,C., Coulson,A.,
            Hillier,L., Durbin,R.K., Green,P., Shownkeen,R., Halloran,N.,
            Hawkins,T., Wilson,R., Berks,M., Du,Z., Thomas,K., Thierry-Mieg,J.
            and Sulston,J.
  TITLE     A survey of expressed genes in Caenorhabditis elegans
  JOURNAL   Nature Genet. 1, 114-123 (1992)
  STANDARD  full automatic
COMMENT     *source: stage=varied; *source: tissue=whole animal; *source:
            clone_library=Chris Martin sorted cDNA library; *source: sex=
            Hermaphrodite;
            Submitted (16-AUG-1992) to the EMBL Data Library by: Nematode
            Sequencing Project, MRC Laboratory of Molecular Biology, Cambridge
            CB2 2QH, England and Department of Genetics, Washington University,
            St. Louis, MO 63110, USA. E-mail: jes@mrc-lmba.cambridge.ac.uk or
            rw@nematode.wustl.edu
            From EMBL    entry CE13A5;  dated 20-AUG-1992.
BASE COUNT       60 a     79 c     59 g     60 t      9 others
ORIGIN
        1 agatgaccaa actaggcgca cagcccggcg ttcacgggag nnnggacgtt gagaaggagt
       61 ctatcaagat cgatccaaaa gtnttcacag tcctccagcc cacagtgatc ccaatgccgg
      121 ctccaccaat gaagcctgct ccatcgccag cnttccaggc gatgagagca tgcntccatt
      181 gcatgntctt tgccacgtgt cttttgctgg tgacactcat cggtttctac ttcctcgncg
      241 ctactcctga tctnttcaag aaaaccg
//
From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: C. elegans cDNA clone cm3a9; 5' end, single read
Date: 10 Sep 92 10:26:10 GMT
Distribution: bionet
Checksum: 59002     2

LOCUS       CEL3A9        372 bp ds-DNA             INV       10-SEP-1992
DEFINITION  C. elegans cDNA clone cm3a9; 5' end, single read
ACCESSION   Z14754
KEYWORDS    expressed sequence tag.
SOURCE      Caenorhabditis elegans DNA.
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
            Rhabditina; Rhabditoidea; Rhabditidae.
REFERENCE   1  (bases 1 to 372)
  AUTHORS   Waterston,R., Martin,C., Craxton,M., Huynh,C., Coulson,A.,
            Hillier,L., Durbin,R.K., Green,P., Shownkeen,R., Halloran,N.,
            Hawkins,T., Wilson,R., Berks,M., Du,Z., Thomas,K., Thierry-Mieg,J.
            and Sulston,J.
  TITLE     A survey of expressed genes in Caenorhabditis elegans
  JOURNAL   Nature Genet. 1, 114-123 (1992)
  STANDARD  full automatic
COMMENT     *source: stage=varied; *source: tissue=whole animal; *source:
            clone_library=Chris Martin sorted cDNA library; *source: sex=
            Hermaphrodite;
            Submitted (16-AUG-1992) to the EMBL Data Library by: Nematode
            Sequencing Project, MRC Laboratory of Molecular Biology, Cambridge
            CB2 2QH, England and Department of Genetics, Washington University,
            St. Louis, MO 63110, USA. E-mail: jes@mrc-lmba.cambridge.ac.uk or
            rw@nematode.wustl.edu
            From EMBL    entry CE3A9;  dated 20-AUG-1992.
BASE COUNT      133 a     68 c     81 g     80 t     10 others
ORIGIN
        1 atgaagatga agaaagagaa cgtgttcgna ttatggttaa tccaaatcca ccaaaaagag
       61 gaacaaaaag tcttcgagat catcatgaag caacagcagc aacaatggaa atgattgtag
      121 atgcatctat attaganttg gctgaaccaa gtcgtcattt aaaacaagga tatccaccta
      181 tttctaaaag anaaaatact ggaaaaagag ctgaaaactt ggattggatt attgatgctg
      241 ttgctaaggg cgtagacgta agcnaanngg gcccccatca tcgtaaaang ccaacactgc
      301 acaaatgtga gtactgtggc cgagtggnca agtatccgag caagattcgt gctcacatgn
      361 ganctcacac cg
//
From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Chimpanzee alphoid repetitive sequence, monomers 1 and 2, clone
Date: 12 Sep 92 10:02:11 GMT
Distribution: bionet
Checksum: 04935     2

LOCUS       CHPRSABW      340 bp ds-DNA             PRI       12-SEP-1992
DEFINITION  Chimpanzee alphoid repetitive sequence, monomers 1 and 2, clone
            C-alpha-RI(680), 23-91 I.
ACCESSION   L01751
KEYWORDS    alphoid repetitive sequence.
SOURCE      Pan troglodytes DNA.
  ORGANISM  Pan troglodytes
            Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
            Eutheria; Primates; Haplorhini; Catarrhini; Pongidae.
REFERENCE   1  (bases 1 to 340)
  AUTHORS   Joergensen,A.L., Laursen,H.B., Jones,C. and Bak,A.L.
  TITLE     Evolutionarily different alphoid repeat DNA on homologous
            chromosomes in human and chimpanzee
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 89, 3310-3314 (1992)
  STANDARD  full staff_entry
FEATURES             Location/Qualifiers
     repeat_region   1..340
                     /rpt_family="alphoid repeat"
                     /note="monomer 1= 1-171; monomer 2= 172-340"
BASE COUNT       97 a     58 c     67 g    118 t
ORIGIN
        1 aattctcagt aacttctttg tgttgtgtgt attcaactca cagatttgaa cctttcctta
       61 cacactgcag gcttgaaact ctctttttct ggaatttgga atttgagatt tcaagcgatt
      121 tgaggccaat attagaaaag gaaatatctt cgtatagaaa ctagacagaa tcattctcag
      181 aaactacttt gtgatgtgtg cattcagctc acagagttta acctttctgt tcatagagca
      241 gtttggaaac actctgtttg taaagtctgc aagtggatat ttggacctct ttgaggactt
      301 cgttggaaac gggatttctt tatataatgc tagacagaag
//
From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Rabbit (clone a2NLM7-IgM) IG rearranged H-chain V-D-J regions
Date: 15 Sep 92 10:05:21 GMT
Distribution: bionet
Checksum: 59961     2

LOCUS       RABIGHV07A    360 bp ss-mRNA            MAM       15-SEP-1992
DEFINITION  Rabbit (clone a2NLM7-IgM) IG rearranged H-chain V-D-J regions
            (IGHVDJ) mRNA, partial cds.
ACCESSION   M99535
KEYWORDS    diversity region; immunoglobulin heavy chain; joining region;
            processed gene; variable region.
SOURCE      Oryctolagus cuniculus (individual_isolate HH324 5, strain R1)
            (library: PCR with C-mu primer) 2 wk. old spleen cDNA to mRNA.
  ORGANISM  Oryctolagus cuniculus
            Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
            Eutheria; Lagomorpha; Leporidae.
REFERENCE   1  (bases 1 to 360)
  AUTHORS   Chen,H.-T., Alexander,C.B., Young-Cooper,G.O. and Mage,R.G.
  TITLE     VH gene expression and regulation in the mutant ALICIA rabbit:
            Rescue of VHa2 allotype expression
  JOURNAL   Unpublished (1992)
  STANDARD  full automatic
FEATURES             Location/Qualifiers
     CDS             <1..>360
                     /product="immunoglobulin heavy chain VDJ region"
                     /gene="IGHVDJ"
                     /codon_start=1
                     /translation="QSVKESEGGLFKPTDTLTLTCTVSGFSLSSNAISWVRQAPGNGL
                     EWIGAIGSSGSAYYASWAKSRSTITRNTNLNTVTLKMTSLTPADTATYFCARDINSYG
                     YAYATDIWGPGTLVTVSS"
BASE COUNT       91 a    101 c     97 g     71 t
ORIGIN
        1 cagtcggtga aggagtccga gggaggtctc ttcaagccaa cggataccct gacactcacc
       61 tgcacagtct ctggattctc cctcagtagc aatgcaataa gctgggtccg ccaggctcca
      121 gggaacgggc tggaatggat cggagccatt ggtagtagtg gtagcgcata ctacgcgagc
      181 tgggccaaaa gccgatccac catcaccaga aacaccaacc tgaacacggt gactctgaaa
      241 atgaccagtc tgacaccggc ggacacggcc acctatttct gtgcgagaga tataaatagt
      301 tatggttatg cttatgctac ggacatctgg ggcccaggga ccctggtcac cgtctcctca
//
From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: C. elegans cDNA clone cm13b2; 5' end, single read
Date: 10 Sep 92 10:16:22 GMT
Distribution: bionet
Checksum: 39101     2

LOCUS       CEL13B2       342 bp ds-DNA             INV       10-SEP-1992
DEFINITION  C. elegans cDNA clone cm13b2; 5' end, single read
ACCESSION   Z14410
KEYWORDS    expressed sequence tag.
SOURCE      Caenorhabditis elegans DNA.
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
            Rhabditina; Rhabditoidea; Rhabditidae.
REFERENCE   1  (bases 1 to 342)
  AUTHORS   Waterston,R., Martin,C., Craxton,M., Huynh,C., Coulson,A.,
            Hillier,L., Durbin,R.K., Green,P., Shownkeen,R., Halloran,N.,
            Hawkins,T., Wilson,R., Berks,M., Du,Z., Thomas,K., Thierry-Mieg,J.
            and Sulston,J.
  TITLE     A survey of expressed genes in Caenorhabditis elegans
  JOURNAL   Nature Genet. 1, 114-123 (1992)
  STANDARD  full automatic
COMMENT     *source: stage=varied; *source: tissue=whole animal; *source:
            clone_library=Chris Martin sorted cDNA library; *source: sex=
            Hermaphrodite;
            Submitted (16-AUG-1992) to the EMBL Data Library by: Nematode
            Sequencing Project, MRC Laboratory of Molecular Biology, Cambridge
            CB2 2QH, England and Department of Genetics, Washington University,
            St. Louis, MO 63110, USA. E-mail: jes@mrc-lmba.cambridge.ac.uk or
            rw@nematode.wustl.edu
            From EMBL    entry CE13B2;  dated 20-AUG-1992.
BASE COUNT       94 a     77 c     68 g     95 t      8 others
ORIGIN
        1 cccaaancga gcaaatctca tgaaagcnct tgtnctcatc ggagcagccg ccaacgatca
       61 ggagcttcaa gagaacatgt tcaaattgat tttngtcccg ctatccgaga gatttgtgtc
      121 agcttgtgat caaccaacga gaacagacat tgattcgcaa attgtcgatt atttgcagtg
      181 ttttgatgga gtggcaaaag ctagtcagag ccactcggct cctgtnctct tcaaatttnt
      241 ctacgcaatc atcgacaaat gcnttggcct aatgcnttcc cgtaatcaaa atgagttggt
      301 ggtttcgaat attcttcaat tgattctcga cgtcactaca aa
//
From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: C. elegans cDNA clone cm2f9; 5' end, single read
Date: 10 Sep 92 10:25:19 GMT
Distribution: bionet
Checksum: 52315     3

LOCUS       CEL2F9        395 bp ds-DNA             INV       10-SEP-1992
DEFINITION  C. elegans cDNA clone cm2f9; 5' end, single read
ACCESSION   Z14722
KEYWORDS    expressed sequence tag.
SOURCE      Caenorhabditis elegans DNA.
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditida;
            Rhabditina; Rhabditoidea; Rhabditidae.
REFERENCE   1  (bases 1 to 395)
  AUTHORS   Waterston,R., Martin,C., Craxton,M., Huynh,C., Coulson,A.,
            Hillier,L., Durbin,R.K., Green,P., Shownkeen,R., Halloran,N.,
            Hawkins,T., Wilson,R., Berks,M., Du,Z., Thomas,K., Thierry-Mieg,J.
            and Sulston,J.
  TITLE     A survey of expressed genes in Caenorhabditis elegans
  JOURNAL   Nature Genet. 1, 114-123 (1992)
  STANDARD  full automatic
COMMENT     *source: stage=varied; *source: tissue=whole animal; *source:
            clone_library=Chris Martin sorted cDNA library; *source: sex=
            Hermaphrodite;
            Submitted (16-AUG-1992) to the EMBL Data Library by: Nematode
            Sequencing Project, MRC Laboratory of Molecular Biology, Cambridge
            CB2 2QH, England and Department of Genetics, Washington University,
            St. Louis, MO 63110, USA. E-mail: jes@mrc-lmba.cambridge.ac.uk or
            rw@nematode.wustl.edu
            From EMBL    entry CE2F9;  dated 20-AUG-1992.
FEATURES             Location/Qualifiers
     misc_feature    1..10
                     /note="trans-spliced leader SL1"
BASE COUNT      125 a     97 c     99 g     69 t      5 others
ORIGIN
        1 caagtntgan atctcccgcc atgagtnagg aaatcaaaca ggaagtaaag gaggaggctc
       61 cagaaacaac gactgaagcc aagaccgnag aggctgctcc tgtcgcagaa gtagttgcag
      121 aagttgttac caacggagat aagccggctg aaaatggaaa gaccgaggag ccaagcaaat
      181 acgccgagac cgagaactac aagaagctta tcgggcttaa aatgaagcca gccctcgccg
      241 acgtcgtgtg cgaaatctac gagtccggac ttctcggccc agaggatctc gatgatcgtg
      301 cagtcgacat catcaactcg gtgaacctcg atcaggnaaa attcatcttt accgaaatca
      361 agaactctga actcttcgga gttgccacca aatcg
//
From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Homo sapiens PCR primer binding region and tandem repeat sequence.
Date: 5 Sep 92 10:01:52 GMT
Distribution: bionet
Checksum: 06885     2

LOCUS       HUMRPT33A     344 bp ds-DNA             PRI       05-SEP-1992
DEFINITION  Homo sapiens PCR primer binding region and tandem repeat sequence.
ACCESSION   L01008
KEYWORDS    PCR primer; tandem repeat.
SOURCE      Homo sapiens Blood DNA.
  ORGANISM  Homo sapiens
            Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria;
            Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
REFERENCE   1  (bases 1 to 344)
  AUTHORS   Weber,J.L. and May,P.E.
  TITLE     Abundant class of Human DNA polymorphisms which can be typed using
            the polymerase chain reaction
  JOURNAL   Am. J. Hum. Genet. 44, 388-396 (1989)
  STANDARD  full automatic
COMMENT     Only one strand sequenced.
FEATURES             Location/Qualifiers
     primer_bind     161..180
                     /standard_name="PCR primer"
                     /evidence=EXPERIMENTAL
     repeat_region   203..242
                     /rpt_family="(CA)n"
                     /rpt_type=tandem
                     /evidence=EXPERIMENTAL
                     /citation=[1]
     primer_bind     complement(263..282)
                     /standard_name="PCR primer"
                     /evidence=EXPERIMENTAL
BASE COUNT      131 a     67 c     45 g    101 t
ORIGIN
        1 gatcagtaaa tgtaatggaa ttatgatgat tttattgggg aatatgattt tctttttctc
       61 aagatgttat tattcatact tgagaattac attagttcaa ataattattg gagtctccaa
      121 agaaagcact atgtaactct tacaaatacc ttcccaaggt gtcaaaaaga gttatgcttg
      181 acaaaaatcc tcaaaatgaa gaacacacac acacacacac acacacacac acacacacac
      241 actccttcct aagccacaca catgggctta tggaattaaa cactcaacac tagacttttt
      301 tttttaaggt atataatcag caataagtac ataaaatgat gatc
//
From: GenBank-Updates@genbank.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: N.meningitidis porA gene encoding class I outer membrane protein
Date: 10 Sep 92 10:34:39 GMT
Distribution: bionet
Checksum: 03407     3

LOCUS       NGOMC105V1    144 bp ds-DNA             BCT       10-SEP-1992
DEFINITION  N.meningitidis porA gene encoding class I outer membrane protein
            variable region 1 (partial)
ACCESSION   Z14275
KEYWORDS    outer membrane protein; outer membrane protein I; porA gene.
SOURCE      Neisseria meningitidis DNA.
  ORGANISM  Neisseria meningitidis
            Prokaryotae; Gracilicutes; Scotobacteria; Neisseriaceae.
REFERENCE   1  (sites)
  AUTHORS   Barlow,A.K., Heckels,J.E. and Clarke,I.N.
  TITLE     The class 1 outer membrane protein of neisseria meningitidis: gene
            sequence, structural and immunological similarities to gonococcal
            porins
  JOURNAL   Mol. Microbiol. 3, 131-139 (1989)
  STANDARD  full staff_review
REFERENCE   2  (sites)
  AUTHORS   McGuinnes,B., Barlow,A.K., Clarke,I.N., Farley,J.E., Poolman,J.T.
            and Heckels,J.E.
  TITLE     Comparative sequence analysis of the class 1 protein gene (porA)
            from three strains of Neisseria meningitidis: synthetic peptides
            define the epitopes responsible for serosubtype specificity
  JOURNAL   J. Exp. Med. 171, 1871-1882 (1990)
  STANDARD  full staff_review
REFERENCE   3  (bases 1 to 144)
  AUTHORS   McGuinness,B.T.
  JOURNAL   Unpublished (1992)
  STANDARD  full staff_review
REFERENCE   4  (sites)
  AUTHORS   McGuinness,B.T., Lambden,P.R. and Heckels,J.E.
  TITLE     Class 1 outer membrane protein of Neisseria meningitidis: Epitope
            analysis of the antigenic diversity between strains, implications
            for subtype definition and molecular epidemiology.
  JOURNAL   Unpublished (1992)
  STANDARD  full staff_review
COMMENT     *source: strain=MC105;
            From EMBL    entry NMMC105V1;  dated 17-AUG-1992.
FEATURES             Location/Qualifiers
     CDS             <1..>144
                     /function="Fragment encodes as yetundefined subtype
                     specificity"
                     /note="Entire sequence(produced by direct sequencing of
                     PCR amplifiedmaterial) represents an internal fragment of
                     theporA gene containing one of the variable regions(VR1)
                     encoding subtype epitopes."
                     /product="Class 1outer membrane protein variable region 1"
                     /gene="porA"
                     /label=VR1
                     /codon_start=1
                     /translation="AGVEGNNIQLQLTEPPSKGQTAIKVTKAKSRIRTKINDFGSFIG
                     FKGS"
                     /citation=[3]
                     /citation=[1]
BASE COUNT       47 a     36 c     36 g     25 t
ORIGIN
        1 gccggcgtgg aaggcaacaa cattcagctg caattgaccg aaccaccctc aaaaggtcag
       61 acggcaataa aagttactaa ggccaaaagc cgcatcagga cgaaaatcaa cgatttcggc
      121 tcgtttatcg gctttaaggg gagc
//