From: GenBank-Updates@net.bio.net
Newsgroups: bionet.molbio.genbank.updates
Subject: Rice dwarf virus segment 1, RNA-dependent RNA polymerase
Date: 3 Jan 93 22:19:00 GMT
Distribution: bionet
Checksum: 02138 10

LOCUS       RDVSEG1H     4423 bp ss-mRNA            VRL       23-DEC-1992
DEFINITION  Rice dwarf virus segment 1, RNA-dependent RNA polymerase
ACCESSION   D10222
KEYWORDS    RNA-dependent RNA polymerase.
SOURCE      Rice dwarf virus (individual_isolate H) (library: RD) cDNA to mRNA,
            clone p1RDU.
  ORGANISM  Rice dwarf virus
            Viridae; ds-RNA nonenveloped viruses; Reoviridae.
REFERENCE   1  (bases 1 to 4423)
  AUTHORS   Suzuki,N.
  JOURNAL   Unpublished (1992)
  STANDARD  full automatic
REFERENCE   2  (sites)
  AUTHORS   Suzuki,N., Tanimura,M., Watanabe,Y., Kusano,T., Kitagawa,Y.,
            Suda,N., Kudo,H., Uyeda,I. and Shikata,E.
  TITLE     Molecular analysis of rice dwarf phytoreovirus segment S1:
            interviral homology of the putative RNA-dependent RNA polymerase
            between plant- and animal-infecting reoviruses
  JOURNAL   Virology 190, 240-247 (1992)
  STANDARD  full automatic
COMMENT     Submitted (06-Jan-1992) to DDBJ by: Nobuhiro Suzuki Biotechnology
            Institute Akita Prefectural College of Agriculture Ohgata,
            Minami-akita-gun Akita 010-04 Japan Phone:  0185-45-2026 x403 Fax:
              0185-45-2678

               [2]  sites.
FEATURES             Location/Qualifiers
     misc_feature    1..6
                     /note="consensus sequence"
     misc_feature    33..39
                     /note="consensus eukaryotic initiator context"
     misc_feature    4420..4423
                     /note="consensus sequence"
     CDS             36..4370
                     /product="RNA-dependent RNA polymerase"
                     /codon_start=1
                     /translation="MDLARSDIVPHLLCLFQEIIQANIQKVSEAYDLELKIMNILTLW
                     RNGSDNLISDNDDYMKKGLFFSRSNDPLALQARYAQMYDDLFKLNNYEVPDDVVRRHD
                     TKILDIILKESSVPFWYDISDDEAHESMLPEFRLQDIHEFRLNLKRVAVAPDESEEIQ
                     MDESQSDKRRRKKRMEKSRPVWLSGSENDRRIELNDSLKPSQKFETKLSSYLLNRLMN
                     EMNPHYVGHPLPALFVTLIMLKAYSIKNKFFSYGIRYMELVCNEIGGPDLNTRTFPVL
                     FGRDGSFVGTRVYSHYPIKLRMILNDLTYLLTYSDLHKFQEFELDVSDEVLLHMLHSP
                     NDGRQLKKAVTRLNLYYGLKFNPKTTDCGVVNGMDFTHKHPITKTADFTSPVLPMTNS
                     FNKAEICYGHSSKILNRAVFTDTVRGYIREDLKSVADLDLPKLHEHVSKLVDTRVNYT
                     IIYDLMFLRVMLNLGGYSRSNQITDFRKTIDEITKMNEDFLSGADPEKNIDTLNAWMA
                     PTMEDCGYRLTKSILFGKFRKAKYPSDLEAKSNIDYYVTARSAGIGNLRISIETDKRK
                     YKVRTTSKSAFVNAMGSGILDVNPVSNEPMMLTDYLLTQTPETRANLEAAIDSGSISD
                     SELMRILGQNSIGSRSTTAWRPVRPIYINVLQAHLAQAFIIGPHINATVNQHESQPTS
                     LWFTGDDLGVGFATLYQNGTADIIAPAIEASSTGKALSVLADCTSWDQTFLTATIIPY
                     YNGIKRALLEYQQADMRNFYMIDSSRTGVPGMRLSEIVDWFNSFQTKRIFNASYLKER
                     HSFVVKYMWSGRLDTFFMNSVQNALITRRIAEEVSLKVSNTGLSWFQVAGDDAIMVYD
                     GSSISTTEQVTRVNEITVRNYEESNHIINPQKTVISHISGEYAKIYYYAGMHFRDPSI
                     QLHESEKDSGASDVTESLRGFGQVIYEYNKRAIGTLRVNALYGRLIAGLAYSVNVRRY
                     DASKRTYANMKYYPPPTSVIAPAAFKGGLGLSFTGLSLNEVLFIKMHLHEAVSQGLHV
                     ISMISFEANEVVSNSLSAYYLKDQKDLLRDMKLGKHLEKVKGISFKSSDLAFSGSDFS
                     QGLNLKRESIDKVKLEVSRKSIRDLRSSGISVPSTHAYENLPYASLHQSFKSLKVDRD
                     TSKFTNERLLVSLLEYKSDIPRVSVTSQYPVYDLINISKVDELNVRSGGPVRFISTPI
                     EGKLLEENIGTRQGVQFKNRGYGGSQEVLHFIRSNGLVITEQALIDLIIKSGVLLMIN
                     PQRGLIDLFQSLSGDTASSMHLANFFMAEKPHWEDNAISLTIAGSLLENCDSRIENVK
                     NFVSVLATGMQRDLQRMFYYVGFVYYAQRLIWSGGHSSKIFVSIDEDKFADFLRGSKP
                     ITRRRKAMAGTKREPINLSANFSYEISEPDREISEYDPLVLCHPLSMPFFGNWQEKYS
                     VMQSDEQM"
BASE COUNT     1314 a    858 c   1000 g   1251 t
ORIGIN      Segment 1.
        1 ggcaaatgat cggctgtgcc tggacttcat tcgtcatgga tcttgcgagg tcggatatcg
       61 ttccgcattt gctatgcctc ttccaagaga taatccaagc caacatccaa aaagtatctg
      121 aggcgtacga tttggagttg aaaataatga acattttgac gttgtggcga aacggatccg
      181 acaatctgat ttcagacaac gatgattaca tgaagaaggg attattcttc agtcggagta
      241 atgatccctt agctttgcag gctcgttatg ctcaaatgta tgatgatctg tttaagctga
      301 acaactatga agtgccagat gatgttgtgc gtaggcatga caccaagatt ttggacataa
      361 tattaaaaga gtcttccgtg ccattttggt atgacatatc ggatgacgaa gctcatgaat
      421 caatgctgcc tgaattcaga ctgcaagaca ttcatgagtt cagattgaat ttgaagcgcg
      481 tagctgtagc acctgacgag tctgaagaga ttcagatgga tgaaagtcag agtgataagc
      541 ggcgtcgcaa gaagaggatg gagaagagtc gccctgtgtg gctgtcggga tcggaaaacg
      601 ataggcgcat agaactaaac gactctttga aacctagtca aaaatttgaa actaagttat
      661 cgtcttatct attaaataga ttgatgaatg agatgaatcc tcattatgtt ggacatccgt
      721 taccagcatt atttgttaca ctcataatgc taaaggctta ttctattaag aacaagttct
      781 tttcgtatgg tataagatac atggagctcg tgtgtaatga gatcggcggt ccggatctca
      841 atacccgaac gttcccagtt ttatttggac gtgacggttc attcgtgggc acacgagtat
      901 actcgcacta tccaataaaa ctacgtatga tactgaacga cttaacttat ttattaacct
      961 actcagacct tcataagttc caagagttcg agctagatgt aagcgatgaa gttttacttc
     1021 atatgttgca cagcccgaat gatggaaggc aacttaagaa ggcggtgaca aggttaaatc
     1081 tctattatgg attgaagttc aacccgaaga ccactgactg cggtgtggtt aatggaatgg
     1141 atttcacgca caaacaccca atcactaaga ctgctgattt cacgtctcca gttttaccca
     1201 tgactaattc tttcaataag gctgaaatat gttatgggca tagtagtaaa attttgaata
     1261 gggctgtgtt tactgacact gtccgtggct acattcgtga ggatcttaag agtgtggccg
     1321 acttagattt gccaaaacta catgagcatg tttcaaaatt ggtggatacg cgtgttaatt
     1381 acacaattat ctatgatctc atgtttctac gagtcatgtt gaaccttggt ggttattcga
     1441 ggtccaatca aatcactgac tttaggaaga ctattgatga gatcacaaaa atgaatgagg
     1501 atttcttatc tggggcggat ccagaaaaga atattgacac attgaatgct tggatggcac
     1561 ctacaatgga ggattgtggt tatcgactta ctaaatctat cttgtttggt aaatttagga
     1621 aagccaaata cccatctgat ttggaggcta agtccaatat tgattattac gtgactgcca
     1681 gatcggctgg gattggcaac ctacgtatat caatagaaac agataaaaga aagtacaaag
     1741 tacggactac gtcgaagtcc gcctttgtta acgccatggg ttctggaata ctagacgtta
     1801 atcccgtcag taatgaacct atgatgttaa ctgattactt gttaacgcaa actcccgaaa
     1861 cgcgagcaaa cttagaggcg gctatagata gcggatctat atccgactct gagttaatgc
     1921 gcatactagg gcagaacagc atcggctcac gttctaccac agcttggaga ccggtacgac
     1981 cgatttacat aaatgtgttg caagcacatt tggcgcaggc cttcatcatc gggcctcaca
     2041 taaatgcaac tgtcaatcag catgaatccc aacctacatc tctttggttc actggggatg
     2101 atttgggggt tggttttgct acactgtatc aaaacggaac cgcggatata atcgctccag
     2161 ctatcgaagc gtcctctact ggtaaagcgc tcagtgttct cgctgactgc acatcctggg
     2221 atcagacgtt tctaacagcg acgattattc cgtactacaa tggaataaaa agagctttgc
     2281 tagaatatca acaagcggat atgcgcaact tctatatgat agatagtagc agaactggcg
     2341 tgccagggat gagactgtct gaaatagtag attggtttaa cagttttcaa accaagcgga
     2401 tattcaatgc ctcctatttg aaagaaaggc attcatttgt ggttaaatat atgtggtcgg
     2461 gacgactgga cactttcttt atgaattctg ttcagaatgc attgatcacg aggagaatag
     2521 ctgaagaagt atccttgaag gtgtcaaaca ctggtttatc ctggtttcag gttgctggcg
     2581 atgacgcaat catggtatac gatggatcat caatctccac aactgagcaa gtgaccagag
     2641 ttaatgaaat cacagttcgt aattatgagg agtcaaatca cataattaat ccgcaaaaaa
     2701 cagtgatttc acatatttct ggtgaatatg ctaaaatata ttattatgca ggaatgcatt
     2761 ttcgtgatcc ctcaattcag ctgcatgaat ccgaaaagga ttctggagca agtgacgtca
     2821 ccgagtcctt acgggggttt ggtcaggtca tatatgaata taacaaaaga gcgattggta
     2881 ccctacgcgt gaacgcttta tatggcaggc taatagccgg gctggcgtat agtgtgaacg
     2941 tccgcaggta tgacgcttca aaaagaacat atgcgaatat gaaatattat ccgccaccaa
     3001 cctcagtaat tgctccagcc gcatttaagg gaggattggg attgtcattt actgggttat
     3061 cgttgaatga ggtgctattt attaaaatgc atctccacga ggcggtatct cagggtcttc
     3121 acgtgatttc aatgatttca tttgaagcca acgaagtcgt ttcaaactct ctgtccgcgt
     3181 attatcttaa ggaccagaaa gatttactgc gtgacatgaa gttaggcaag catcttgaaa
     3241 aagtcaaagg tatatccttt aagtcctctg atttagcctt ttcgggtagt gatttctcgc
     3301 aagggctgaa cctaaagagg gaatctattg ataaagtgaa gctcgaagtg tctcgtaaat
     3361 ctatccgtga tttgcgctct tcgggtatta gtgtgccatc aacgcacgca tatgaaaatt
     3421 tgccatatgc atcattgcat cagtctttca aaagtctaaa agtggataga gacacttcga
     3481 aatttacgaa tgaacggtta ctggtttcac tcctcgagta taaatcagac attccgagag
     3541 taagtgtcac ctcgcagtat ccagtttatg acttgatcaa catctcaaaa gttgatgagt
     3601 taaatgtcag atccggtgga ccagtcaggt tcatctctac cccaatagaa ggcaagctat
     3661 tggaagaaaa tattggtacc cgtcaaggag ttcagtttaa aaatcgaggg tacggaggat
     3721 ctcaagaagt attacacttc ataagatcca acggcttggt gataactgaa caagctctga
     3781 ttgacttaat catcaagtca ggagtactgc taatgataaa tccacaacgt gggttgatcg
     3841 acctttttca gtctctttct ggagataccg cttcatctat gcatctagcg aacttcttca
     3901 tggctgaaaa accgcactgg gaagataatg ccatatctct caccattgcg gggtcgttgc
     3961 ttgagaactg cgatagtaga attgagaacg taaagaactt tgttagcgtc cttgctactg
     4021 gcatgcaaag ggacctacaa agaatgttct attacgtcgg atttgtctac tatgcacaga
     4081 gacttatatg gtctggtggc cactccagta aaatattcgt ctctattgat gaggataagt
     4141 tcgctgactt ccttagagga tctaaaccaa tcactcggag gaggaaagcc atggctggaa
     4201 ctaagcgtga accgatcaat ttaagcgcta atttcagtta tgaaatatct gaaccggata
     4261 gggagattag tgagtacgac ccgctagtct tatgtcatcc cctatcaatg ccattttttg
     4321 gtaattggca ggagaaatac tctgtgatgc agagcgacga gcaaatgtga ttgatccgcc
     4381 aggctatccg ttgggatagg ttaatcagcc gatcatatat gat
//