GenAI4ELab/papercli-papers huggingface dataset:
GenderAlign: An Alignment Dataset for Mitigating Gender Bias in Large Language Models
Authors: Tao Zhang; Ziqian Zeng; Yuxiang Xiao; Huiping Zhuang; Cen Chen; James Foulds; Shimei Pan
Venue: ACL 2025 (Proceedings of the 63rd Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers))

Abstract: Large Language Models (LLMs) are prone to generating content that exhibits gender biases, raising significant ethical concerns. Alignment, the process of fine-tuning LLMs to better align with desired behaviors, is recognized as an effective approach to mitigate gender biases. Although proprietary LLMs have made significant strides in mitigating gender bias, their alignment datasets are not publicly available. The commonly used and publicly available alignment dataset, HH-RLHF, still exhibits gender bias to some extent. There is a lack of publicly available alignment datasets specifically designed to address gender bias. Hence, we developed a new dataset named GenderAlign, aiming at mitigating a comprehensive set of gender biases in LLMs. This dataset comprises 8k single-turn dialogues, each paired with a “chosen” and a “rejected” response. Compared to the “rejected” responses, the “chosen” responses demonstrate lower levels of gender bias and higher quality. Furthermore, we categorized the gender biases in the “rejected” responses of GenderAlign into 4 principal categories. The experimental results show the effectiveness of GenderAlign in reducing gender bias in LLMs.
Large Language and Protein Assistant for Protein-Protein Interactions Prediction
Authors: Peng Zhou; Pengsen Ma; Jianmin Wang; Xibao Cai; Haitao Huang; Wei Liu; Longyue Wang; Lai Hou Tim; Xiangxiang Zeng
Venue: ACL 2025 (Proceedings of the 63rd Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers))

Abstract: Predicting the types and affinities of protein-protein interactions (PPIs) is crucial for understanding biological processes and developing novel therapeutic approaches. While encoding proteins themselves is essential, PPI networks can also provide rich prior knowledge for these predictive tasks. However, existing methods oversimplify the problem of PPI prediction in a semi-supervised manner when utilizing PPI networks, limiting their practical application. Furthermore, how to effectively use the rich prior knowledge of PPI networks for novel proteins not present in the network remains an unexplored issue. Additionally, due to inflexible architectures, most of existing methods cannot handle complexes containing an flexible number of proteins. To overcome these limitations, we introduce LLaPA (Large Language and Protein Assistant), a multimodal large language model that integrates proteins and PPI networks. LLaPA offers a more rational approach to utilizing PPI networks for PPI prediction and can fully exploit the information of PPI networks for unseen proteins. Through natural language instructions, LLaPA can accept flexible number of protein sequences and has the potential to perform various protein tasks. Experiments show that LLaPA achieves state-of-the-art performance in multi-label PPI (mPPI) type prediction and is capable of predicting the binding affinity between multiple interacting proteins based on sequence data.
An Empirical Study of Many-to-Many Summarization with Large Language Models
Authors: Jiaan Wang; Fandong Meng; Zengkui Sun; Yunlong Liang; Yuxuan Cao; Jiarong Xu; Haoxiang Shi; Jie Zhou
Venue: ACL 2025 (Proceedings of the 63rd Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers))

Abstract: Many-to-many summarization (M2MS) aims to process documents in any language and generate the corresponding summaries also in any language. Recently, large language models (LLMs) have shown strong multi-lingual abilities, giving them the potential to perform M2MS in real applications. This work presents a systematic empirical study on LLMs’ M2MS ability. Specifically, we first reorganize M2MS data based on eight previous domain-specific datasets. The reorganized data contains 47.8K samples spanning five domains and six languages, which could be used to train and evaluate LLMs. Then, we benchmark 18 LLMs in a zero-shot manner and an instruction-tuning manner. Fine-tuned traditional models (e.g., mBART) are also conducted for comparisons. Our experiments reveal that, zero-shot LLMs achieve competitive results with fine-tuned traditional models. After instruct-tuning, open-source LLMs can significantly improve their M2MS ability, and outperform zero-shot LLMs (including GPT-4) in terms of automatic evaluations. In addition, we demonstrate this task-specific improvement does not sacrifice the LLMs’ general task-solving abilities. However, as revealed by our human evaluation, LLMs still face the factuality issue, and the instruction tuning might intensify the issue. Thus, how to control factual errors becomes the key when building LLM summarizers in real applications, and is worthy to be noted in future research.
Locate-and-Focus: Enhancing Terminology Translation in Speech Language Models
Authors: Suhang Wu; Jialong Tang; Chengyi Yang; Pei Zhang; Baosong Yang; Junhui Li; Junfeng Yao; Min Zhang; Jinsong Su
Venue: ACL 2025 (Proceedings of the 63rd Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers))

Abstract: Direct speech translation (ST) has garnered increasing attention nowadays, yet the accurate translation of terminology within utterances remains a great challenge. In this regard, current studies mainly concentrate on leveraging various translation knowledge into ST models. However, these methods often struggle with interference from irrelevant noise and can not fully utilize the translation knowledge. To address these issues, in this paper, we propose a novel Locate-and-Focus method for terminology translation. It first effectively locates the speech clips containing terminologies within the utterance to construct translation knowledge, minimizing irrelevant information for the ST model. Subsequently, it associates the translation knowledge with the utterance and hypothesis from both audio and textual modalities, allowing the ST model to better focus on translation knowledge during translation. Experimental results across various datasets demonstrate that our method effectively locates terminologies within utterances and enhances the success rate of terminology translation, while maintaining robust general translation performance.
GuideBench: Benchmarking Domain-Oriented Guideline Following for LLM Agents
Authors: Lingxiao Diao; Xinyue Xu; Wanxuan Sun; Cheng Yang; Zhuosheng Zhang
Venue: ACL 2025 (Proceedings of the 63rd Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers))

Abstract: Large language models (LLMs) have been widely deployed as autonomous agents capable of following user instructions and making decisions in real-world applications. Previous studies have made notable progress in benchmarking the instruction following capabilities of LLMs in general domains, with a primary focus on their inherent commonsense knowledge. Recently, LLMs have been increasingly deployed as domain-oriented agents, which rely on domain-oriented guidelines that may conflict with their commonsense knowledge. These guidelines exhibit two key characteristics: they consist of a wide range of domain-oriented rules and are subject to frequent updates. Despite these challenges, the absence of comprehensive benchmarks for evaluating the domain-oriented guideline following capabilities of LLMs presents a significant obstacle to their effective assessment and further development. In this paper, we introduce GuideBench, a comprehensive benchmark designed to evaluate guideline following performance of LLMs. GuideBench evaluates LLMs on three critical aspects: (i) adherence to diverse rules, (ii) robustness to rule updates, and (iii) alignment with human preferences. Experimental results on a range of LLMs indicate substantial opportunities for improving their ability to follow domain-oriented guidelines. Data and code are available at Anonymous.
TC–RAG: Turing–Complete RAG’s Case study on Medical LLM Systems
Authors: Xinke Jiang; Yue Fang; Rihong Qiu; Haoyu Zhang; Yongxin Xu; Hao Chen; Wentao Zhang; Ruizhe Zhang; Yuchen Fang; Xinyu Ma; Xu Chu; Junfeng Zhao; Yasha Wang
Venue: ACL 2025 (Proceedings of the 63rd Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers))

Abstract: In the pursuit of enhancing domain-specific Large Language Models (LLMs), Retrieval-Augmented Generation (RAG) emerges as a promising solution to mitigate issues such as hallucinations, outdated knowledge, and limited expertise in highly specialized queries. However, existing approaches to RAG fall short by neglecting system state variables, which are crucial for ensuring adaptive control, retrieval halting, and system convergence. In this paper, we introduce the Turing-Complete-RAG (TC-RAG) through rigorous proof, a novel framework that addresses these challenges by incorporating a Turing Complete System to manage state variables, thereby enabling more efficient and accurate knowledge retrieval. By leveraging a memory stack system with adaptive retrieval, reasoning, and planning capabilities, TC-RAG not only ensures the controlled halting of retrieval processes but also mitigates the accumulation of erroneous knowledge via Push and Pop actions. In the case study of the medical and general domain, our extensive experiments on seven real-world healthcare and general-domain datasets demonstrate the superiority of TC-RAG over existing methods in accuracy by over 7.20%. Our code, datasets and RAG resources have been available at https://github.com/Artessay/TC-RAG.
SoRFT: Issue Resolving with Subtask-oriented Reinforced Fine-Tuning
Authors: Zexiong Ma; Chao Peng; Pengfei Gao; Xiangxin Meng; Yanzhen Zou; Bing Xie
Venue: ACL 2025 (Proceedings of the 63rd Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers))

Abstract: Mainstream issue-resolving frameworks predominantly rely on commercial models, leading to high costs and privacy concerns. Existing training approaches for issue resolving struggle with poor generalization and fail to fully leverage open-source development resources. We propose **S**ubtask-**o**riented **R**einforced **F**ine-**T**uning (**SoRFT**), a novel training approach to enhance the issue resolving capability of LLMs. We decomposes issue resolving into structured subtasks: file localization, function localization, line localization, and code edit generation. SoRFT consists of two training stages: (1) **rejection-sampled supervised fine-tuning**, Chain of Thought (CoT) data is filtered using ground-truth before fine-tuning the LLM, and (2) **rule-based reinforcement learning**, which leverages PPO with ground-truth based rewards. We evaluate the SoRFT-trained model on SWE-Bench Verified and SWE-Bench Lite, achieving state-of-the-art (SOTA) performance among open-source models (e.g., resolve 21.4% issues on SWE-Bench Verified with SoRFT-Qwen-7B). The experimental results demonstrate that SoRFT significantly enhances issue-resolving performance, improves model generalization, and provides a cost-efficient alternative to commercial models.
MiniLongBench: The Low-cost Long Context Understanding Benchmark for Large Language Models
Authors: Zhongzhan Huang; Guoming Ling; Shanshan Zhong; Hefeng Wu; Liang Lin
Venue: ACL 2025 (Proceedings of the 63rd Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers))

Abstract: Long Context Understanding (LCU) is a critical area for exploration in current large language models (LLMs). However, due to the inherently lengthy nature of long-text data, existing LCU benchmarks for LLMs often result in prohibitively high evaluation costs, like testing time and inference expenses. Through extensive experimentation, we discover that existing LCU benchmarks exhibit significant redundancy, which means the inefficiency in evaluation. In this paper, we propose a concise data compression method tailored for long-text data with sparse information characteristics. By pruning the well-known LCU benchmark LongBench, we create MiniLongBench. This benchmark includes only 237 test samples across six major task categories and 21 distinct tasks. Through empirical analysis of over 60 LLMs, MiniLongBench achieves an average evaluation cost reduced to only 4.5% of the original while maintaining an average rank correlation coefficient of 0.97 with LongBench results. Therefore, our MiniLongBench, as a low-cost benchmark, holds great potential to substantially drive future research into the LCU capabilities of LLMs.
Divide-Then-Align: Honest Alignment based on the Knowledge Boundary of RAG
Authors: Xin Sun; Jianan Xie; Zhongqi Chen; Qiang Liu; Shu Wu; Yuehe Chen; Bowen Song; Zilei Wang; Weiqiang Wang; Liang Wang
Venue: ACL 2025 (Proceedings of the 63rd Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers))

Abstract: Large language models (LLMs) augmented with retrieval systems have significantly advanced natural language processing tasks by integrating external knowledge sources, enabling more accurate and contextually rich responses. To improve the robustness of such systems against noisy retrievals, Retrieval-Augmented Fine-Tuning (RAFT) has emerged as a widely adopted method. However, RAFT conditions models to generate answers even in the absence of reliable knowledge. This behavior undermines their reliability in high-stakes domains, where acknowledging uncertainty is critical. To address this issue, we propose Divide-Then-Align (DTA), a post-training approach designed to endow RAG systems with the ability to respond with “I don’t know” when the query is out of the knowledge boundary of both the retrieved passages and the model’s internal knowledge. DTA divides data samples into four knowledge quadrants and constructs tailored preference data for each quadrant, resulting in a curated dataset for Direct Preference Optimization (DPO). Experimental results on three benchmark datasets demonstrate that effectively balances accuracy with appropriate abstention, enhancing the reliability and trustworthiness of retrieval-augmented systems.
PwnGPT: Automatic Exploit Generation Based on Large Language Models
Authors: Wanzong Peng; Lin Ye; Xuetao Du; Hongli Zhang; Dongyang Zhan; Yunting Zhang; Yicheng Guo; Chen Zhang
Venue: ACL 2025 (Proceedings of the 63rd Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers))

Abstract: Automatic exploit generation (AEG) refers to the automatic discovery and exploitation of vulnerabilities against unknown targets. Traditional AEG often targets a single type of vulnerability and still relies on templates built from expert experience. To achieve intelligent exploit generation, we establish a comprehensive benchmark using Binary Exploitation (pwn) challenges in Capture the Flag (CTF) competitions and investigate the capabilities of Large Language Models (LLMs) in AEG based on the benchmark. To improve the performance of AEG, we propose PwnGPT, an LLM-based automatic exploit generation framework that automatically solves pwn challenges. The structural design of PwnGPT is divided into three main components: analysis, generation, and verification modules. With the help of a modular approach and structured problem inputs, PwnGPT can solve challenges that LLMs cannot directly solve. We evaluate PwnGPT on our benchmark and analyze the outputs of each module. Experimental results show that our framework is highly autonomous and capable of addressing various challenges. Compared to direct input LLMs, PwnGPT increases the completion rate of exploit on our benchmark from 26.3% to 57.9% with the OpenAI o1-preview model and from 21.1% to 36.8% with the GPT-4o model.
VMLU Benchmarks: A comprehensive benchmark toolkit for Vietnamese LLMs
Authors: Cuc Thi Bui; Nguyen Truong Son; Truong Van Trang; Lam Viet Phung; Pham Nhut Huy; Hoang Anh Le; Quoc Huu Van; Phong Nguyen-Thuan Do; Van Le Tran Truc; Duc Thanh Chau; Le-Minh Nguyen
Venue: ACL 2025 (Proceedings of the 63rd Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers))

Abstract: The evolution of Large Language Models (LLMs) has underscored the necessity for benchmarks designed for various languages and cultural contexts. To address this need for Vietnamese, we present the first Vietnamese Multitask Language Understanding (VMLU) Benchmarks. The VMLU benchmarks consist of four datasets that assess different capabilities of LLMs, including general knowledge, reading comprehension, reasoning, and conversational skills. This paper also provides an insightful overview of the current state of some dominant LLMs, such as Llama-3, Qwen2.5, and GPT-4, highlighting their performances and limitations when measured against these benchmarks. Furthermore, we provide insights into how prompt design can influence VMLU’s evaluation outcomes, as well as suggest that open-source LLMs can serve as effective, cost-efficient evaluators within the Vietnamese context. By offering a comprehensive and accessible benchmarking framework, the VMLU Benchmarks aim to foster the development and fine-tuning of Vietnamese LLMs, thereby establishing a foundation for their practical applications in language-specific domains.
Scaling up the State Size of RNN LLMs for Long-Context Scenarios
Authors: Kai Liu; Jianfei Gao; Kai Chen
Venue: ACL 2025 (Proceedings of the 63rd Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers))

Abstract: The Transformer architecture has become the standard LLM architecture due to its powerful self-attention mechanism. However, it suffers from quadratic computational complexity and linear memory complexity. RNN-based LLMs have been proposed as alternatives. Yet, RNN models struggle in long-context scenarios, making it challenging to replace self-attention with RNNs. We identify the state size as a critical bottleneck, which is significantly smaller than that of Transformers with a basic context length of 2k. However, simply increasing the state size significantly raises the number of parameters and lowers training efficiency. In this paper, we propose an efficient scaling method to scale the state size of RNN models to match the 2k context length of Transformers, with small parameters overhead. Experimental results demonstrate that scaling the state size significantly enhances long-context understanding. Retrieval performance scales almost linearly with state size, with a 454M model featuring an expanded state achieving performance comparable to a 1.47B model on FDA, a recall-intensive task. These findings highlight state scaling as a promising approach for advancing RNN-based LLMs.
Unifying Continuous and Discrete Text Diffusion with Non-simultaneous Diffusion Processes
Authors: Bocheng Li; Zhujin Gao; Linli Xu
Venue: ACL 2025 (Proceedings of the 63rd Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers))

Abstract: Diffusion models have emerged as a promising approach for text generation, with recent works falling into two main categories: discrete and continuous diffusion models. Discrete diffusion models apply token corruption independently using categorical distributions, allowing for different diffusion progress across tokens but lacking fine-grained control. Continuous diffusion models map tokens to continuous spaces and apply fine-grained noise, but the diffusion progress is uniform across tokens, limiting their ability to capture semantic nuances. To address these limitations, we propose Non-simultaneous Continuous Diffusion Models (NeoDiff), a novel diffusion model that integrates the strengths of both discrete and continuous approaches. NeoDiff introduces a Poisson diffusion process for the forward process, enabling a flexible and fine-grained noising paradigm, and employs a time predictor for the reverse process to adaptively modulate the denoising progress based on token semantics. Furthermore, NeoDiff utilizes an optimized schedule for inference to ensure more precise noise control and improved performance. Our approach unifies the theories of discrete and continuous diffusion models, offering a more principled and effective framework for text generation. Experimental results on several text generation tasks demonstrate NeoDiff’s superior performance compared to baselines of non-autoregressive continuous and discrete diffusion models, iterative-based methods and autoregressive diffusion-based methods. These results highlight NeoDiff’s potential as a powerful tool for generating high-quality text and advancing the field of diffusion-based text generation.
A Strategic Coordination Framework of Small LMs Matches Large LMs in Data Synthesis
Authors: Xin Gao; Qizhi Pei; Zinan Tang; Yu Li; Honglin Lin; Jiang Wu; Lijun Wu; Conghui He
Venue: ACL 2025 (Proceedings of the 63rd Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers))

Abstract: While data synthesis and distillation are promising strategies to enhance small language models, current approaches heavily rely on Large Language Models (LLMs), which suffer from high computational costs, environmental inefficiency, and potential biases inherited from monolithic architectures. In contrast, smaller LMs are more accessible and sustainable, but their individual capabilities often fall short in generating high-quality, diverse, and reliable data. Inspired by collaborative human processes (e.g., peer review), we propose a multiple small LMs involved framework, GRA, that aggregates specialized roles across small LMs to iterative refinement and quality control typically achieved by a single large LM. In this collaborative framework, multiple small LMs assume distinct roles—Generator, Reviewer, and Adjudicator—to simulate a peer-review-inspired data synthesis pipeline. The Generator proposes initial data samples, the Reviewer critiques their quality and diversity, and the Adjudicator resolves conflicts to finalize the output. By decomposing the synthesis process into specialized sub-tasks, collaborative small LMs can achieve data-level parity with distillation from large LMs. Through experiments across multiple benchmarks, we demonstrate that GRA-produced data matches or exceeds the quality of single large LM outputs, e.g., Qwen-2.5-72B-Instruct. Our results challenge the necessity of monolithic large models for high-quality data synthesis, advocating instead for strategic coordination of smaller agents.
Defining and Evaluating Visual Language Models’ Basic Spatial Abilities: A Perspective from Psychometrics
Authors: Wenrui Xu; Dalin Lyu; Weihang Wang; Jie Feng; Chen Gao; Yong Li
Venue: ACL 2025 (Proceedings of the 63rd Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers))

Abstract: The Theory of Multiple Intelligences underscores the hierarchical nature of cognitive capabilities. To advance Spatial Artificial Intelligence, we pioneer a psychometric framework defining five Basic Spatial Abilities (BSAs) in Visual Language Models (VLMs): Spatial Perception, Spatial Relation, Spatial Orientation, Mental Rotation, and Spatial Visualization. Benchmarking 13 mainstream VLMs through nine validated psychometric experiments reveals significant gaps versus humans, with three key findings: 1) VLMs mirror human hierarchies (strongest in 2D orientation, weakest in 3D rotation) with independent BSAs; 2) Many smaller models surpass larger counterparts, with Qwen leading and InternVL2 lagging; 3) Interventions like CoT and few-shot training show limits from architectural constraints, while ToT demonstrates the most effective enhancement. Identified barriers include weak geometry encoding and missing dynamic simulation. By linking Psychometrics to VLMs, we provide a comprehensive BSA evaluation benchmark, a methodological perspective for embodied AI development, and a cognitive science-informed roadmap for achieving human-like spatial intelligence.