GenAI4ELab/papercli-papers huggingface dataset:
PandaPose: 3D Human Pose Lifting from a Single Image via Propagating 2D Pose Prior to 3D Anchor Space
Authors: Jinghong Zheng; Changlong Jiang; Yang Xiao; Jiaqi Li; Haohong Kuang; Hang Xu; Ran Wang; Zhiguo Cao; Min Du; Joey Tianyi Zhou
Venue: NeurIPS 2025 (NeurIPS 2025 poster)

Abstract: 3D human pose lifting from a single RGB image is a challenging task in 3D vision. Existing methods typically establish a direct joint-to-joint mapping from 2D to 3D poses based on 2D features. This formulation suffers from two fundamental limitations: inevitable error propagation from input predicted 2D pose to 3D predictions and inherent difficulties in handling self-occlusion cases. 
In this paper, we propose PandaPose, a 3D human pose lifting approach via propagating 2D pose prior to 3D anchor space as the unified intermediate representation. Specifically, our 3D anchor space comprises: 
(1) Joint-wise 3D anchors in the canonical coordinate system, providing accurate and robust priors to mitigate 2D pose estimation inaccuracies. 
(2) Depth-aware joint-wise feature lifting that hierarchically integrates depth information to resolve self-occlusion ambiguities. 
(3) The anchor-feature interaction decoder that incorporates 3D anchors with lifted features to generate unified anchor queries encapsulating joint-wise 3D anchor set, visual cues and geometric depth information.
The anchor queries are further employed to facilitate anchor-to-joint ensemble prediction.
Experiments on three well-established benchmarks (i.e., Human3.6M, MPI-INF-3DHP and 3DPW) demonstrate the superiority of our proposition.
The substantial reduction in error by 14.7% compared to SOTA methods
on the challenging conditions of Human3.6M and qualitative comparisons further showcase the effectiveness and robustness of our approach.
Practical and Effective Code Watermarking for Large Language Models
Authors: Zhimeng Guo; Minhao Cheng
Venue: NeurIPS 2025 (NeurIPS 2025 poster)

Abstract: The rapid advancement of Large Language Models (LLMs) in code generation has raised significant attribution and intellectual property concerns. Code watermarking offers a potential solution but faces unique challenges due to programming languages' strict syntactic constraints and semantic requirements.
To address these challenges, we introduce ACW (AST-guided Code Watermarking), a novel adaptive framework that leverages Abstract Syntax Tree (AST) analysis during training to learn watermark embedding strategies. Our framework identifies substitutable code components and strategically biases token selections to embed watermarks. We also propose a novel sampling scheme that distributes tokens between green/red lists according to semantic context, ensuring statistical distinguishability while preserving code functionality. Extensive experiments demonstrate that ACW achieves a significant improvement in watermark detection accuracy compared to existing methods, with negligible impact on code functionality. This adaptive framework offers a promising solution for effective and practical code watermarking in the age of LLMs. Our code is available at: https://github.com/TimeLovercc/code-watermark.
DualMPNN: Harnessing Structural Alignments for High-Recovery Inverse Protein Folding
Authors: Xuhui Liao; Qiyu Wang; Zhiqiang Liang; Liwei Xiao; Junjie Chen
Venue: NeurIPS 2025 (NeurIPS 2025 poster)

Abstract: Inverse protein folding addresses the challenge of designing amino acid sequences that fold into a predetermined tertiary structure, bridging geometric and evolutionary constraints to advance protein engineering.  Inspired by the pivotal role of multiple sequence alignments (MSAs) in structure prediction models like AlphaFold, we hypothesize that structural alignments can provide an informative prior for inverse folding. In this study, we introduce DualMPNN, a dual-stream message passing neural network that leverages structurally homologous templates to guide amino acid sequence design of predefined query structures. DualMPNN processes the query and template proteins via two interactive branches, coupled through alignment-aware cross-stream attention mechanisms that enable exchange of geometric and co-evolutionary signals. Comprehensive evaluations across on CATH 4.2, TS50 and T500 benchmarks demonstrate DualMPNN achieves state-of-the-art recovery rates of 65.51\%, 70.99\%, and 70.37\%, significantly outperforming base model ProteinMPNN by 15.64\%, 16.56\%, 12.29\%, respectively. Further template quality analysis and structural foldability assessment underscore the value of structural alignment priors for protein design.
Role Bias in Diffusion Models: Diagnosing and Mitigating through Intermediate Decomposition
Authors: Sina Malakouti; Adriana Kovashka
Venue: NeurIPS 2025 (NeurIPS 2025 poster)

Abstract: Text-to-image (T2I) diffusion models exhibit impressive photorealistic image generation capabilities, yet they struggle in compositional image generation. In this work, we introduce RoleBench, a benchmark focused on evaluating compositional generalization in action-based relations (e.g., "mouse chasing cat"). We show that state-of-the-art T2I models and compositional generation methods consistently default to frequent reversed relations (i.e., "cat chasing mouse"), a phenomenon we call role collapse. Related works attribute this to the model’s architectural limitation or underrepresentation in the data. Our key insight reveals that while models fail on rare compositions when their inversions are common, they can successfully generate similar intermediate compositions (e.g., "mouse chasing boy"), suggesting that this limitation is also due to the presence of frequent counterparts rather than just the absence of rare compositions. Motivated by this, we hypothesize that directional decomposition can gradually mitigate role collapse. We test this via ReBind, a lightweight framework that teaches role bindings using carefully selected active/passive intermediate compositions. Experiments suggest that intermediate compositions through simple fine-tuning can significantly reduce role collapse, with humans preferring ReBind more than 78% compared to state-of-the-art methods. Our findings highlight the role of distributional asymmetries in compositional failures and offer a simple, effective path for improving generalization.
One Stone with Two Birds: A Null-Text-Null Frequency-Aware Diffusion Models for Text-Guided Image Inpainting
Authors: Haipeng Liu; Yang Wang; Meng Wang
Venue: NeurIPS 2025 (NeurIPS 2025 poster)

Abstract: Text-guided image inpainting aims at reconstructing the masked regions as per text prompts, where the longstanding challenges lie in the preservation for unmasked regions, while achieving the semantics consistency between unmasked and inpainted masked regions. Previous arts failed to address both of them, always with either of them to be remedied. Such facts, as we observed, stem from the entanglement of the hybrid (e.g., mid-and-low) frequency bands that encode varied image properties, which exhibit different robustness to text prompts during the denoising process. In this paper, we propose a null-text-null frequency-aware diffusion models, dubbed NTN-Diff, for text-guided image inpainting, by decomposing the semantics consistency across masked and unmasked regions into the consistencies as per each frequency band, while preserving the unmasked regions, to circumvent two challenges in a row. Based on the diffusion process, we further divide the denoising process into early (high-level noise) and late (low-level noise) stages, where the mid-and-low frequency bands are disentangled during the denoising process. As observed, the stable mid-frequency band is progressively denoised to be semantically aligned during text-guided denoising process, which, meanwhile, serves as the guidance to the null-text denoising process to denoise low-frequency band for the masked regions, followed by a subsequent text-guided denoising process at late stage, to achieve the semantics consistency for mid-and-low frequency bands across masked and unmasked regions, while preserve the unmasked regions. Extensive experiments validate the superiority of NTN-Diff over the state-of-the-art diffusion models to text-guided diffusion models. Our code can be accessed from https://github.com/htyjers/NTN-Diff.
Ground-Compose-Reinforce: Grounding Language in Agentic Behaviours using Limited Data
Authors: Andrew C Li; Toryn Q. Klassen; Andrew Wang; Parand A. Alamdari; Sheila A. McIlraith
Venue: NeurIPS 2025 (NeurIPS 2025 poster)

Abstract: Grounding language in perception and action is a key challenge when building situated agents that can interact with humans, or other agents, via language. In the past, addressing this challenge has required manually designing the language grounding or curating massive datasets that associate language with the environment. We propose Ground-Compose-Reinforce, an end-to-end, neurosymbolic framework for training RL agents directly from high-level task specifications—without manually designed reward functions or other domain-specific oracles, and without massive datasets. These task specifications take the form of Reward Machines, automata-based representations that capture high-level task structure and are in some cases autoformalizable from natural language. Critically, we show that Reward Machines can be grounded using limited data by exploiting compositionality. Experiments in a custom Meta-World domain with only 350 labelled pretraining trajectories show that our framework faithfully elicits complex behaviours from high-level specifications—including behaviours that never appear in pretraining—while non-compositional approaches fail.
Repurposing Marigold for Zero-Shot Metric Depth Estimation via Defocus Blur Cues
Authors: Chinmay Talegaonkar; Nikhil Gandudi Suresh; Zachary Novack; Yash Belhe; Priyanka Nagasamudra; Nicholas Antipa
Venue: NeurIPS 2025 (NeurIPS 2025 spotlight)

Abstract: Recent monocular metric depth estimation (MMDE) methods have made notable progress towards zero-shot generalization. However, they still exhibit a significant performance drop on out-of-distribution datasets. We address this limitation by injecting defocus blur cues at inference time into Marigold, a \textit{pre-trained} diffusion model for zero-shot, scale-invariant monocular depth estimation (MDE). Our method effectively turns Marigold into a metric depth predictor in a training-free manner. To incorporate defocus cues, we capture two images with a small and a large aperture from the same viewpoint. To recover metric depth, we then optimize the metric depth scaling parameters and the noise latents of Marigold at inference time using gradients from a loss function based on the defocus-blur image formation model. We compare our method against existing state-of-the-art zero-shot MMDE methods on a self-collected real dataset, showing quantitative and qualitative improvements.
Self-Generated In-Context Examples Improve LLM Agents for Sequential Decision-Making Tasks
Authors: Vishnu Sarukkai; Zhiqiang Xie; Kayvon Fatahalian
Venue: NeurIPS 2025 (NeurIPS 2025 poster)

Abstract: Improving Large Language Model (LLM) agents for sequential decision-making tasks typically requires extensive task-specific knowledge engineering—custom prompts, curated examples, and specialized observation/action spaces. We investigate a different approach where agents automatically improve by learning from their own successful experiences without human intervention. Our method constructs and refines a database of self-generated trajectories that serve as in-context examples for future tasks. Even naive accumulation of successful trajectories yields substantial performance gains across three diverse benchmarks: ALFWorld (73\% to 89\%), Wordcraft (55\% to 64\%), and InterCode-SQL (75\% to 79\%). These improvements exceed those achieved by upgrading from gpt-4o-mini to gpt-4o and match the performance of allowing multiple attempts per task. We further enhance this approach with two innovations: database-level curation using population-based training to propagate high-performing example collections, and exemplar-level curation that selectively retains trajectories based on their empirical utility as in-context examples. With these enhancements, our method achieves 93\% success on ALFWorld—surpassing approaches that use more powerful LLMs and hand-crafted components. Our trajectory bootstrapping technique demonstrates that agents can autonomously improve through experience, offering a scalable alternative to labor-intensive knowledge engineering.
RESAnything: Attribute Prompting for Arbitrary Referring Segmentation
Authors: Ruiqi Wang; Hao Zhang
Venue: NeurIPS 2025 (NeurIPS 2025 poster)

Abstract: We present an open-vocabulary and zero-shot method for arbitrary referring expression segmentation (RES), targeting input expressions that are more general than what prior works were designed to handle. Specifically, our inputs encompass both object- and part-level labels as well as implicit references pointing to properties or qualities of object/part function, design, style, material, etc. Our model, coined RESAnything, leverages Chain-of-Thoughts (CoT) reasoning, where the key idea is attribute prompting. We generate detailed descriptions of object/part attributes including shape, color, and location for potential segment proposals through systematic prompting of a large language model (LLM), where the proposals are produced by a foundational image segmentation model. Our approach encourages deep reasoning about object or part attributes related to function, style, design, etc., enabling the system to handle implicit queries without any part annotations for training or fine-tuning. As the first zero-shot and LLM-based RES method, RESAnything achieves clearly superior performance among zero-shot methods on traditional RES benchmarks and significantly outperforms existing methods on challenging scenarios involving implicit queries and complex part-level relations. Finally, we contribute a new benchmark dataset to offer ~3K carefully curated RES instances to assess part-level, arbitrary RES solutions.
D-VST: Diffusion Transformer for Pathology-Correct Tone-Controllable Cross-Dye Virtual Staining of Whole Slide Images
Authors: Shurong Yang; Dong Wei; Yihuang Hu; Qiong Peng; Hong Liu; Yawen Huang; Xian Wu; Yefeng Zheng; Liansheng Wang
Venue: NeurIPS 2025 (NeurIPS 2025 poster)

Abstract: Diffusion-based virtual staining methods of histopathology images have demonstrated outstanding potential for stain normalization and cross-dye staining (e.g., hematoxylin-eosin to immunohistochemistry). However, achieving pathology-correct cross-dye virtual staining with versatile tone controls poses significant challenges due to the difficulty of decoupling the given pathology and tone conditions. This issue would cause non-pathologic regions to be mistakenly stained like pathologic ones, and vice versa, which we term “pathology leakage.” To address this issue, we propose diffusion virtual staining Transformer (D-VST), a new framework with versatile tone control for cross-dye virtual staining. Specifically, we introduce a pathology encoder in conjunction with a tone encoder, combined with a two-stage curriculum learning scheme that decouples pathology and tone conditions, to enable tone control while eliminating pathology leakage. Further, to extend our method for billion-pixel whole slide image (WSI) staining, we introduce a novel frequency-aware adaptive patch sampling strategy for high-quality yet efficient inference of ultra-high resolution images in a zero-shot manner. Integrating these two innovative components facilitates a pathology-correct, tone-controllable, cross-dye WSI virtual staining process. Extensive experiments on three virtual staining tasks that involve translating between four different dyes demonstrate the superiority of our approach in generating high-quality and pathologically accurate images compared to existing methods based on generative adversarial networks and diffusion models. Our code and trained models will be released.
MVSMamba: Multi-View Stereo with State Space Model
Authors: Jianfei Jiang; Qiankun Liu; Hongyuan Liu; Haochen Yu; Liyong Wang; Jiansheng Chen; Huimin Ma
Venue: NeurIPS 2025 (NeurIPS 2025 poster)

Abstract: Robust feature representations are essential for learning-based Multi-View Stereo (MVS), which relies on accurate feature matching. Recent MVS methods leverage Transformers to capture long-range dependencies based on local features extracted by conventional feature pyramid networks. However, the quadratic complexity of Transformer-based MVS methods poses challenges to balance performance and efficiency. Motivated by the global modeling capability and linear complexity of the Mamba architecture, we propose MVSMamba, the first Mamba-based MVS network. MVSMamba enables efficient global feature aggregation with minimal computational overhead. To fully exploit Mamba's potential in MVS, we propose a Dynamic Mamba module (DM-module) based on a novel reference-centered dynamic scanning strategy, which enables: (1)  Efficient intra- and inter-view feature interaction from the reference to source views, (2) Omnidirectional multi-view feature representations, and (3) Multi-scale global feature aggregation. Extensive experimental results demonstrate MVSMamba outperforms state-of-the-art MVS methods on the DTU dataset and the Tanks-and-Temples benchmark with both superior performance and efficiency. The source code is available at https://github.com/JianfeiJ/MVSMamba.
Permissioned LLMs: Enforcing Access Control in Large Language Models
Authors: Bargav Jayaraman; Virendra Marathe; Hamid Mozaffari; William F. Shen; Krishnaram Kenthapadi
Venue: NeurIPS 2025 (NeurIPS 2025 poster)

Abstract: In enterprise settings, organizational data is segregated, siloed and carefully protected by elaborate access control frameworks. These access control structures can completely break down if an LLM fine-tuned on the siloed data serves requests, for downstream tasks, from individuals with disparate access privileges. We propose Permissioned LLMs (PermLLM), a new class of LLMs that superimpose the organizational data access control structures on query responses they generate. We formalize abstractions underpinning the means to determine whether access control enforcement happens correctly over LLM query responses. Our formalism introduces the notion of a relevant response that can be used to prove whether a PermLLM mechanism has been implemented correctly. We also introduce a novel
metric, called access advantage, to empirically evaluate the efficacy of a PermLLM mechanism. We introduce three novel PermLLM mechanisms that build on Parameter Efficient Fine-Tuning to achieve the desired access control. We furthermore present two instantiations of access advantage–(i) Domain Distinguishability Index (DDI) based on Membership Inference Attacks, and (ii) Utility Gap Index (UGI)
based on LLM utility evaluation. We demonstrate the efficacy of our PermLLM mechanisms through extensive experiments on five public datasets (GPQA, RCV1, SimpleQA, WMDP, and PubMedQA), in addition to evaluating the validity of DDI and UGI metrics themselves for quantifying access control in LLMs.
From Pose to Muscle: Multimodal Learning for Piano Hand Muscle Electromyography
Authors: RUOFAN LIU; YICHEN PENG; Takanori Oku; Chen-Chieh Liao; Erwin Wu; Shinichi Furuya; Hideki Koike
Venue: NeurIPS 2025 (NeurIPS 2025 poster)

Abstract: Muscle coordination is fundamental when humans interact with the world. Reliable estimation of hand muscle engagement can serve as a source of internal feedback, supporting the development of embodied intelligence and the acquisition of dexterous skills. However, contemporary electromyography (EMG) sensing techniques either require prohibitively expensive devices or are constrained to gross motor movements, which inherently involve large muscles. On the other hand, EMGs exhibit dependency on individual anatomical variability and task-specific contexts, resulting in limited generalization. In this work, we preliminarily investigate the latent pose-EMG correspondence using a general EMG gesture dataset. We further introduce a multimodal dataset, PianoKPM Dataset, and a hand muscle estimation framework, PianoKPM Net, to facilitate high-fidelity EMG inference. Subsequently, our approach is compared against reproducible competitive baselines. The generalization and adaptation across unseen users and tasks are evaluated by quantifying the training set scale and the included data amount.
PARTONOMY: Large Multimodal Models with Part-Level Visual Understanding
Authors: Ansel Blume; Jeonghwan Kim; Hyeonjeong Ha; Elen Chatikyan; Xiaomeng Jin; Khanh Duy Nguyen; Nanyun Peng; Kai-Wei Chang; Derek Hoiem; Heng Ji
Venue: NeurIPS 2025 (NeurIPS 2025 spotlight)

Abstract: Real-world objects are composed of distinctive, object-specific parts. Identifying these parts is key to performing fine-grained, compositional reasoning—yet, large multimodal models (LMMs) struggle to perform this seemingly straightforward task. In this work, we introduce PARTONOMY, an LMM benchmark designed for pixel-level part grounding. We construct PARTONOMY from existing part datasets and our own rigorously annotated set of images, encompassing 862 parts and 5346
objects for evaluation. Unlike existing datasets that simply ask models to identify generic parts, PARTONOMY utilizes highly technical concepts and challenges models to compare objects’ parts, consider part-whole relationships, and justify textual predictions with visual segmentations. Our experiments demonstrate significant limitations in state-of-the-art LMMs (e.g., LISA-13B achieves only 5.9% gIoU), highlighting a critical gap in their part grounding abilities. We note that existing segmentation-enabled LMMs (segmenting LMMs) have two key architectural shortcomings: they use special [SEG] tokens not seen during pretraining which induce distribution shift, and they discard predicted segmentations instead of using past predictions to guide future ones. To address these deficiencies, we train several part-centric LMMs and propose PLUM, a novel segmenting LMM that utilizes span tagging instead of segmentation tokens and that conditions on prior predictions in a feedback loop. We find that pretrained PLUM dominates existing segmenting LMMs on reasoning segmentation, VQA, and visual hallucination benchmarks. In addition, PLUM finetuned on our proposed Explanatory Part Segmentation task is competitive with segmenting LMMs trained on significantly more segmentation data. Our work opens up new avenues towards enabling fine-grained, grounded visual understanding in LMMs.
Stochastic Gradients under Nuisances
Authors: Facheng Yu; Ronak Mehta; Alex Luedtke; Zaid Harchaoui
Venue: NeurIPS 2025 (NeurIPS 2025 poster)

Abstract: Stochastic gradient optimization is the dominant learning paradigm for a variety of scenarios, from classical supervised learning to modern self-supervised learning. We consider stochastic gradient algorithms for learning problems whose objectives rely on unknown nuisance parameters, and establish non-asymptotic convergence guarantees. Our results show that, while the presence of a nuisance can alter the optimum and upset the optimization trajectory, the classical stochastic gradient algorithm may still converge under appropriate conditions, such as Neyman orthogonality. Moreover, even when Neyman orthogonality is not satisfied, we also show that an algorithm variant with approximately orthogonalized updates (with an approximately orthogonalized gradient oracle) may achieve similar convergence rates. Examples from orthogonal statistical learning/double machine learning and causal inference are discussed.