GenAI4ELab/papercli-papers huggingface dataset:
Can Transformers Smell Like Humans?
Authors: Farzaneh Taleb; Miguel Vasco; Antonio H. Ribeiro; Mårten Björkman; Danica Kragic
Venue: NeurIPS 2024 (NeurIPS 2024 spotlight)

Abstract: The human brain encodes stimuli from the environment into representations that form a sensory perception of the world. Despite recent advances in understanding visual and auditory perception, olfactory perception remains an under-explored topic in the machine learning community due to the lack of large-scale datasets annotated with labels of human olfactory perception. In this work, we ask the question of whether pre-trained transformer models of chemical structures encode representations that are aligned with human olfactory perception, i.e., can transformers smell like humans? We demonstrate that representations encoded from transformers pre-trained on general chemical structures are highly aligned with human olfactory perception.  We use multiple datasets and different types of perceptual representations to show that the representations encoded by transformer models are able to predict: (i) labels associated with odorants‌‌ provided by experts; (ii) continuous ratings provided by human participants with respect to pre-defined descriptors; and (iii) similarity ratings between odorants provided by human participants. Finally, we evaluate the extent to which this alignment is associated with physicochemical features of odorants known to be relevant for olfactory decoding.
Geodesic Optimization for Predictive Shift Adaptation on EEG data
Authors: Apolline Mellot; Antoine Collas; Sylvain Chevallier; Alexandre Gramfort; Denis Alexander Engemann
Venue: NeurIPS 2024 (NeurIPS 2024 spotlight)

Abstract: Electroencephalography (EEG) data is often collected from diverse contexts involving different populations and EEG devices. This variability can induce distribution shifts in the data $X$ and in the biomedical variables of interest $y$, thus limiting the application of supervised machine learning (ML) algorithms. While domain adaptation (DA) methods have been developed to mitigate the impact of these shifts, such methods struggle when distribution shifts occur simultaneously in $X$ and $y$. As state-of-the-art ML models for EEG represent the data by spatial covariance matrices, which lie on the Riemannian manifold of Symmetric Positive Definite (SPD) matrices, it is appealing to study DA techniques operating on the SPD manifold. This paper proposes a novel method termed Geodesic Optimization for Predictive Shift Adaptation (GOPSA) to address test-time multi-source DA for situations in which source domains have distinct $y$ distributions. GOPSA exploits the geodesic structure of the Riemannian manifold to jointly learn a domain-specific re-centering operator representing site-specific intercepts and the regression model. We performed empirical benchmarks on the cross-site generalization of age-prediction models with resting-state EEG data from a large multi-national dataset (HarMNqEEG), which included $14$ recording sites and more than $1500$ human participants. Compared to state-of-the-art methods, our results showed that GOPSA achieved significantly higher performance on three regression metrics ($R^2$, MAE, and Spearman's $\rho$) for several source-target site combinations, highlighting its effectiveness in tackling multi-source DA with predictive shifts in EEG data analysis. Our method has the potential to combine the advantages of mixed-effects modeling with machine learning for biomedical applications of EEG, such as multicenter clinical trials.
Mixture of Tokens: Continuous MoE through Cross-Example Aggregation
Authors: Szymon Antoniak; Michał Krutul; Maciej Pióro; Jakub Krajewski; Jan Ludziejewski; Kamil Ciebiera; Krystian Król; Tomasz Odrzygóźdź; Marek Cygan; Sebastian Jaszczur
Venue: NeurIPS 2024 (NeurIPS 2024 poster)

Abstract: Mixture of Experts (MoE) models based on Transformer architecture are pushing the boundaries of language and vision tasks. The allure of these models lies in their ability to substantially increase the parameter count without a corresponding increase in FLOPs. Most widely adopted MoE models are discontinuous with respect to their parameters - often referred to as *sparse*. At the same time, existing continuous MoE designs either lag behind their sparse counterparts or are incompatible with autoregressive decoding. Motivated by the observation that the adaptation of fully continuous methods has been an overarching trend in Deep Learning, we develop Mixture of Tokens (MoT), a simple, continuous architecture that is capable of scaling the number of parameters similarly to sparse MoE models. Unlike conventional methods, MoT assigns mixtures of tokens from different examples to each expert. This architecture is fully compatible with autoregressive training and generation. Our best models not only achieve a 3x increase in training speed over dense Transformer models in language pretraining but also match the performance of state-of-the-art MoE architectures. Additionally, a close connection between MoT and MoE is demonstrated through a novel technique we call *transition tuning*.
ClavaDDPM: Multi-relational Data Synthesis with Cluster-guided Diffusion Models
Authors: Wei Pang; Masoumeh Shafieinejad; Lucy Liu; Stephanie Hazlewood; Xi He
Venue: NeurIPS 2024 (NeurIPS 2024 poster)

Abstract: Recent research in tabular data synthesis has focused on single tables, whereas real-world applications often involve complex data with tens or hundreds of interconnected tables. Previous approaches to synthesizing multi-relational (multi-table) data fall short in two key aspects: scalability for larger datasets and capturing long-range dependencies, such as correlations between attributes spread across different tables. Inspired by the success of diffusion models in tabular data modeling, we introduce 
 \textbf{C}luster \textbf{La}tent \textbf{Va}riable guided \textbf{D}enoising \textbf{D}iffusion \textbf{P}robabilistic \textbf{M}odels (ClavaDDPM). This novel approach leverages clustering labels as intermediaries to model relationships between tables, specifically focusing on foreign key constraints. ClavaDDPM leverages the robust generation capabilities of diffusion models while incorporating efficient algorithms to propagate the learned latent variables across tables. This enables ClavaDDPM to capture long-range dependencies effectively. 
 Extensive evaluations on multi-table datasets of varying sizes show that ClavaDDPM significantly outperforms existing methods for these long-range dependencies while remaining competitive on utility metrics for single-table data.
Data Augmentation with Diffusion for Open-Set Semi-Supervised Learning
Authors: Seonghyun Ban; Heesan Kong; Kee-Eung Kim
Venue: NeurIPS 2024 (NeurIPS 2024 poster)

Abstract: Semi-supervised learning (SSL) seeks to utilize unlabeled data to overcome the limited amount of labeled data and improve model performance. However, many SSL methods typically struggle in real-world scenarios, particularly when there is a large number of irrelevant instances in the unlabeled data that do not belong to any class in the labeled data. Previous approaches often downweight instances from irrelevant classes to mitigate the negative impact of class distribution mismatch on model training. However, by discarding irrelevant instances, they may result in the loss of valuable information such as invariance, regularity, and diversity within the data. In this paper, we propose a data-centric generative augmentation approach that leverages a diffusion model to enrich labeled data using both labeled and unlabeled samples. A key challenge is extracting the diversity inherent in the unlabeled data while mitigating the generation of samples irrelevant to the labeled data. To tackle this issue, we combine diffusion model training with a discriminator that identifies and reduces the impact of irrelevant instances. We also demonstrate that such a trained diffusion model can even convert an irrelevant instance into a relevant one, yielding highly effective synthetic data for training. Through a comprehensive suite of experiments, we show that our data augmentation approach significantly enhances the performance of SSL methods, especially in the presence of class distribution mismatch.
Learning Versatile Skills with Curriculum Masking
Authors: Yao Tang; Zhihui Xie; Zichuan Lin; Deheng Ye; Shuai Li
Venue: NeurIPS 2024 (NeurIPS 2024 poster)

Abstract: Masked prediction has emerged as a promising pretraining paradigm in offline reinforcement learning (RL) due to its versatile masking schemes, enabling flexible inference across various downstream tasks with a unified model. Despite the versatility of masked prediction, it remains unclear how to balance the learning of skills at different levels of complexity. To address this, we propose CurrMask, a curriculum masking pretraining paradigm for sequential decision making. Motivated by how humans learn by organizing knowledge in a curriculum, CurrMask adjusts its masking scheme during pretraining for learning versatile skills.  Through extensive experiments, we show that CurrMask exhibits superior zero-shot performance on skill prompting tasks, goal-conditioned planning tasks, and competitive finetuning performance on offline RL tasks. Additionally, our analysis of training dynamics reveals that CurrMask gradually acquires skills of varying complexity by dynamically adjusting its masking scheme.
Learning from Offline Foundation Features with Tensor Augmentations
Authors: Emir Konuk; Christos Matsoukas; Moein Sorkhei; Phitchapha Lertsiravarameth; Kevin Smith
Venue: NeurIPS 2024 (NeurIPS 2024 poster)

Abstract: We introduce Learning from Offline Foundation Features with Tensor Augmentations (LOFF-TA), an efficient training scheme designed to harness the capabilities of foundation models in limited resource settings where their direct development is not feasible. LOFF-TA involves training a compact classifier on cached feature embeddings  from a frozen foundation model, resulting in up to  $37\times$ faster training and up to $26\times$ reduced GPU memory usage. Because the embeddings of augmented images would be too numerous to store, yet the augmentation process is essential for training, we propose to apply tensor augmentations to the cached embeddings of the original non-augmented images. LOFF-TA makes it possible to leverage the power of foundation models, regardless of their size, in settings with limited computational capacity. Moreover, LOFF-TA can be used to apply foundation models to high-resolution images without increasing compute.    In certain scenarios, we find that training with LOFF-TA yields better results than directly fine-tuning the foundation model.
3D Structure Prediction of Atomic Systems with Flow-based Direct Preference Optimization
Authors: Rui Jiao; Xiangzhe Kong; Wenbing Huang; Yang Liu
Venue: NeurIPS 2024 (NeurIPS 2024 poster)

Abstract: Predicting high-fidelity 3D structures of atomic systems is a fundamental yet challenging problem in scientific domains. While recent work demonstrates the advantage of generative models in this realm, the exploration of different probability paths are still insufficient, and hallucinations during sampling are persistently occurring. To address these pitfalls, we introduce FlowDPO, a novel framework that explores various probability paths with flow matching models and further suppresses hallucinations using Direct Preference Optimization (DPO) for structure generation. Our approach begins with a pre-trained flow matching model to generate multiple candidate structures for each training sample. These structures are then evaluated and ranked based on their distance to the ground truth, resulting in an automatic preference dataset. Using this dataset, we apply DPO to optimize the original model, improving its performance in generating structures closely aligned with the desired reference distribution. As confirmed by our theoretical analysis, such paradigm and objective function are compatible with arbitrary Gaussian paths, exhibiting favorable universality. Extensive experimental results on antibodies and crystals demonstrate substantial benefits of our FlowDPO, highlighting its potential to advance the field of 3D structure prediction with generative models.
A Simple Remedy for Dataset Bias via Self-Influence: A Mislabeled Sample Perspective
Authors: Yeonsung Jung; Jaeyun Song; June Yong Yang; Jin-Hwa Kim; Sung-Yub Kim; Eunho Yang
Venue: NeurIPS 2024 (NeurIPS 2024 poster)

Abstract: Learning generalized models from biased data is an important undertaking toward fairness in deep learning. To address this issue, recent studies attempt to identify and leverage bias-conflicting samples free from spurious correlations without prior knowledge of bias or an unbiased set. However, spurious correlation remains an ongoing challenge, primarily due to the difficulty in correctly detecting these samples. In this paper, inspired by the similarities between mislabeled samples and bias-conflicting samples, we approach this challenge from a novel perspective of mislabeled sample detection. Specifically, we delve into Influence Function, one of the standard methods for mislabeled sample detection, for identifying bias-conflicting samples and propose a simple yet effective remedy for biased models by leveraging them. Through comprehensive analysis and experiments on diverse datasets, we demonstrate that our new perspective can boost the precision of detection and rectify biased models effectively. Furthermore, our approach is complementary to existing methods, showing performance improvement even when applied to models that have already undergone recent debiasing techniques.
Blind Image Restoration via Fast Diffusion Inversion
Authors: Hamadi Chihaoui; Abdelhak Lemkhenter; Paolo Favaro
Venue: NeurIPS 2024 (NeurIPS 2024 poster)

Abstract: Image Restoration (IR) methods based on a pre-trained diffusion model have demonstrated state-of-the-art performance. However, they have two fundamental limitations: 1) they often assume that the degradation operator is completely known and 2) they alter the diffusion sampling process, which may result in restored images that do not lie onto the data manifold. To address these issues, we propose Blind Image Restoration via fast Diffusion inversion (BIRD) a blind IR method that jointly optimizes for the degradation model parameters and the restored image. To ensure that the restored images lie onto the data manifold, we propose a novel sampling technique on a pre-trained diffusion model. A key idea in our method is not to modify the reverse sampling, i.e., not to alter all the intermediate latents, once an initial noise is sampled. This is ultimately equivalent to casting the IR task as an optimization problem in the space of the input noise. Moreover, to mitigate the computational cost associated with inverting a fully unrolled diffusion model, we leverage the inherent capability of these models to skip ahead in the forward diffusion process using large time steps. We experimentally validate BIRD on several image restoration tasks and show that it achieves state of the art performance.
Diffusion-DICE: In-Sample Diffusion Guidance for Offline Reinforcement Learning
Authors: Liyuan Mao; Haoran Xu; Xianyuan Zhan; Weinan Zhang; Amy Zhang
Venue: NeurIPS 2024 (NeurIPS 2024 poster)

Abstract: One important property of DIstribution Correction Estimation (DICE) methods is that the solution is the optimal stationary distribution ratio between the optimized and data collection policy. In this work, we show that DICE-based methods can be viewed as a transformation from the behavior distribution to the optimal policy distribution. Based on this, we propose a novel approach, Diffusion-DICE, that directly performs this transformation using diffusion models. We find that the optimal policy's score function can be decomposed into two terms: the behavior policy's score function and the gradient of a guidance term which depends on the optimal distribution ratio. The first term can be obtained from a diffusion model trained on the dataset and we propose an in-sample learning objective to learn the second term. Due to the multi-modality contained in the optimal policy distribution, the transformation in Diffusion-DICE may guide towards those local-optimal modes. We thus generate a few candidate actions and carefully select from them to achieve global-optimum. Different from all other diffusion-based offline RL methods, the \textit{guide-then-select} paradigm in Diffusion-DICE only uses in-sample actions for training and brings minimal error exploitation in the value function. We use a didatic toycase example to show how previous diffusion-based methods fail to generate optimal actions due to leveraging these errors and how Diffusion-DICE successfully avoid that. We then conduct extensive experiments on benchmark datasets to show the strong performance of Diffusion-DICE.
Regression under demographic parity constraints via unlabeled post-processing
Authors: Gayane Taturyan; Evgenii Chzhen; Mohamed Hebiri
Venue: NeurIPS 2024 (NeurIPS 2024 poster)

Abstract: We address the problem of performing regression while ensuring demographic parity, even without access to sensitive attributes during inference. We present a general-purpose post-processing algorithm that, using accurate estimates of the regression function and a sensitive attribute predictor, generates predictions that meet the demographic parity constraint. Our method involves discretization and stochastic minimization of a smooth convex function. It is suitable for online post-processing and multi-class classification tasks only involving unlabeled data for the post-processing. Unlike prior methods, our approach is fully theory-driven. We require precise control over the gradient norm of the convex function, and thus, we rely on more advanced techniques than standard stochastic gradient descent. Our algorithm is backed by finite-sample analysis and post-processing bounds, with experimental results validating our theoretical findings.
Con4m: Context-aware Consistency Learning Framework for Segmented Time Series Classification
Authors: Junru Chen; Tianyu Cao; Jing Xu; Jiahe Li; Zhilong Chen; Tao Xiao; Yang Yang
Venue: NeurIPS 2024 (NeurIPS 2024 poster)

Abstract: Time Series Classification (TSC) encompasses two settings: classifying entire sequences or classifying segmented subsequences. The raw time series for segmented TSC usually contain Multiple classes with Varying Duration of each class (MVD). Therefore, the characteristics of MVD pose unique challenges for segmented TSC, yet have been largely overlooked by existing works. Specifically, there exists a natural temporal dependency between consecutive instances (segments) to be classified within MVD. However, mainstream TSC models rely on the assumption of independent and identically distributed (i.i.d.), focusing on independently modeling each segment. Additionally, annotators with varying expertise may provide inconsistent boundary labels, leading to unstable performance of noise-free TSC models. To address these challenges, we first formally demonstrate that valuable contextual information enhances the discriminative power of classification instances. Leveraging the contextual priors of MVD at both the data and label levels, we propose a novel consistency learning framework Con4m, which effectively utilizes contextual information more conducive to discriminating consecutive segments in segmented TSC tasks, while harmonizing inconsistent boundary labels for training. Extensive experiments across multiple datasets validate the effectiveness of Con4m in handling segmented TSC tasks on MVD. The source code is available at https://github.com/MrNobodyCali/Con4m.
Improving Viewpoint-Independent Object-Centric Representations through Active Viewpoint Selection
Authors: Yinxuan Huang; Chengmin Gao; Bin Li; Xiangyang Xue
Venue: NeurIPS 2024 (NeurIPS 2024 poster)

Abstract: Given the complexities inherent in visual scenes, such as object occlusion, a comprehensive understanding often requires observation from multiple viewpoints. Existing multi-viewpoint object-centric learning methods typically employ random or sequential viewpoint selection strategies. While applicable across various scenes, these strategies may not always be ideal, as certain scenes could benefit more from specific viewpoints. To address this limitation, we propose a novel active viewpoint selection strategy. This strategy predicts images from unknown viewpoints based on information from observation images for each scene. It then compares the object-centric representations extracted from both viewpoints and selects the unknown viewpoint with the largest disparity, indicating the greatest gain in information, as the next observation viewpoint. Through experiments on various datasets, we demonstrate the effectiveness of our active viewpoint selection strategy, significantly enhancing segmentation and reconstruction performance compared to random viewpoint selection. Moreover, our method can accurately predict images from unknown viewpoints.
Constructing Semantics-Aware Adversarial Examples with a Probabilistic Perspective
Authors: Andi Zhang; Mingtian Zhang; Damon Wischik
Venue: NeurIPS 2024 (NeurIPS 2024 poster)

Abstract: We propose a probabilistic perspective on adversarial examples, allowing us to embed subjective understanding of semantics as a distribution into the process of generating adversarial examples, in a principled manner. Despite significant pixel-level modifications compared to traditional adversarial attacks, our method preserves the overall semantics of the image, making the changes difficult for humans to detect. This extensive pixel-level modification enhances our method's ability to deceive classifiers designed to defend against adversarial attacks. Our empirical findings indicate that the proposed methods achieve higher success rates in circumventing adversarial defense mechanisms, while remaining difficult for human observers to detect.
Inversion-based Latent Bayesian Optimization
Authors: Jaewon Chu; Jinyoung Park; Seunghun Lee; Hyunwoo J. Kim
Venue: NeurIPS 2024 (NeurIPS 2024 poster)

Abstract: Latent Bayesian optimization (LBO) approaches have successfully adopted Bayesian optimization over a continuous latent space by employing an encoder-decoder architecture to address the challenge of optimization in a high dimensional or discrete input space. LBO learns a surrogate model to approximate the black-box objective function in the latent space. However, we observed that most LBO methods suffer from the `misalignment problem', which is induced by the reconstruction error of the encoder-decoder architecture. It hinders learning an accurate surrogate model and generating high-quality solutions. In addition, several trust region-based LBO methods select the anchor, the center of the trust region, based solely on the objective function value without considering the trust region's potential to enhance the optimization process. To address these issues, we propose $\textbf{Inv}$ersion-based Latent $\textbf{B}$ayesian $\textbf{O}$ptimization (InvBO), a plug-and-play module for LBO. InvBO consists of two components: an inversion method and a potential-aware trust region anchor selection. The inversion method searches the latent code that completely reconstructs the given target data. The potential-aware trust region anchor selection considers the potential capability of the trust region for better local optimization. Experimental results demonstrate the effectiveness of InvBO on nine real-world benchmarks, such as molecule design and arithmetic expression fitting tasks. Code is available at https://github.com/mlvlab/InvBO.