Before revision:  To facilitate this development there is a need for new computational tools to cross-register multi-modal data sets containing MRI volumes as well as multiple histological series , and to register the combined data set to a common reference atlas. We present a fully automatic pipeline for same-subject-MRI guided reconstruction of image volumes from a series of histological sections of different modalities, followed by diffeomorphic mapping to a reference atlas.
After revision:  To facilitate this development there is a need for new computational tools to cross-register multi-modal data sets containing MRI volumes as well as multiple histological series that can help address individual variations in brain architecture. Here we present a computational approach for same-subject multimodal MRI guided reconstruction of image volumes from a series of histological sections of different modalities, followed by diffeomorphic mapping to a reference atlas.