Before revision:   The topology of the protein molecule emerges as a major determinant of the shape of the energy landscape . The algorithm was tested with protein G. The tertiary structure of the protein was predicted to a reasonably high level of accuracy. The best conformation found had an RMSD of 3.12A from the native structure. Two other proteins, chymotrypsin inhibitor 2 and Src tyrosine kinase SH3 domain, were also tested, with the best conformations found having RMSD 4.75A and 5.33A from their respective native structures .
After revision:  The topology of the protein molecule emerges as a major determinant of the shape of the energy landscape .