Before revision:   A topological analysis of the posterior samples is performed to produce energy landscape charts, which give a high level description of the potential energy surface for the protein folding simulations.
After revision:  We demonstrate the method by conducting folding simulations on a number of small proteins which are commonly used for testing protein folding procedures: protein G, the SH3 domain of Src tyrosine kinase and chymotrypsin inhibitor 2. A topological analysis of the posterior samples is performed to produce energy landscape charts, which give a high level description of the potential energy surface for the protein folding simulations.