Before revision:  When using CLEAR transcripts vs. using all available transcripts, downstream analyses reveal more shared DEGs , improved Principal Component Analysis separation of cell type, and increased similarity between results across different input RNA amounts.
After revision:  When using CLEAR transcripts vs. using all available transcripts, downstream analyses reveal more shared DEGs , improved Principal Component Analysis (PCA) separation, and yielded more DEGs between cell types. As proof-of-principle,