Before revision:  For the current publication we processed only the three largest datasets: yeast, human and fruitfly. ppiTrim maps interactants to NCBI Gene IDs, deflates possibly spoke-expanded complexes and reconciles annotation labels between different source databases. Our results indicate that ppiTrim is able to significantly reduce the complexity of interaction datasets. URL: ftp://ftp.ncbi.nlm.nih.gov/pub/qmbpmn/ppiTrim/
After revision:  For the current publication we processed only the three largest datasets: yeast, human and fruitfly. While ppiTrim can resolve most apparent conflicts between different labelings, we also discovered some unresolvable disagreements mostly resulting from different annotation policies among repositories. URL: URL