Before revision:  However, this will require a system for going from EM images to 3D volume meshes which can be used in finite element simulations . Methods: In this paper, we develop an end-to-end pipeline for this task by adapting and extending computer graphics mesh processing and smoothing algorithms.
After revision:  However, this will require a system for going from EM images to 3D volume meshes , which can then form the basis of computer simulations of such processes using numerical techniques such as the Finite Element Method (FEM). In this paper, we develop an end-to-end pipeline for this task by adapting and extending computer graphics mesh processing and smoothing algorithms.