Before revision: We develop a network-based algorithm to predict and verify indirect regulatory interactions in a large-scale genetic regulatory network. Indirect regulations are important as they constitute the majority of experimental data. Our approach is based on the network topology and can be easily incorporated using a matrix formalism.
After revision: We develop a network-based algorithm to predict and verify indirect interactions in gene and protein regulatory networks. It is based on the network topology and can be easily incorporated using a matrix formalism.