EMBO/SourceData huggingface dataset:
Figure legend: "(E) Complexome profiles for the proteins found specifically enriched in ∆4-CYB UQCR10HA, according to the SILAC immunopurification experiments The represented values are the mean ± SEM of the two reciprocal labeling experiments."
NCBI gene IDs:
"HA: 
4-CYB: 4519
UQCR10: 29796"
Figure legend: "(F) SDS-PAGE, Western blot and immunodetection, with the indicated specific antibodies, of ∆4-CYB and WT cells expressing an HA-tagged version of CYC1 and of cells transduced with the lentiviral expression vector without any cDNA insert (Empty)."
NCBI gene IDs:
"HA: 
CYC1: 1537
4-CYB: 4519"
Figure legend: "(H) Scatter plot generated from the analysis of the logarithmic heavy (H) to light (L) ratios in the x-axis and the reverse in the y-axis, in the two reciprocal labeling SILAC experiments of anti-HA immunopurification of ∆4-CYB and WT cells expressing CYC1HA."
NCBI gene IDs:
"HA: 
CYC1: 1537
4-CYB: 4519"
Figure legend: "(B) Complexome profiles of the cI assembly factor NDUFAF2 in WT (blue) and ∆4-CYB (red) mitochondria The represented values are the mean ± SEM of the two reciprocal labeling experiments."
NCBI gene IDs:
"4-CYB: 4519"
Figure legend: "(D) Quantification of the area of the N-module peak corresponding to the molecular mass of the fully assembled cI: 1,172 kDa in ∆4-CYB samples and the respirasome (cI+cIII2+cIV) SCs in #4.1 WT samples (2,110 kDa). The plotted values are the mean mean ± SD (n=2). Unpaired Student's t-test ****p&lt;0.0001."
NCBI gene IDs:
"4-CYB: 4519"
Figure legend: "(E) 2D BNGE, Western blot and immunodetection analysis of WT and ∆4-CYB mitochondria from cells collected at the same times after doxycycline treatment to follow the incorporation kinetics of the indicated cI nuclear-encoded subunits, belonging to different structural modules. The blots shown were either exposed for 16 sec. (low exposures) or 160 sec. (high exposures) in order to visualize the qualitative signals in the ∆4-CYB samples."
NCBI gene IDs:
"4-CYB: 4519"
Figure legend: "(A) SDS-PAGE, Western blot and immunodetection of AOXHA expression in whole-cell lysates from WT and ∆4-CYB cells transduced with the AOXHA/pWPXLd-ires-HygroR lentiviral vector. The transduction and selection controls were the same cell lines transfected with an empty pWPXLd-ires-HygroR vector (EV)."
NCBI gene IDs:
"HA: 
AOX: 2874947
4-CYB: 4519"
Figure legend: "(B) Growth curves of the AOXHA expressing cell lines and their corresponding EV controls. Cell growth was monitored every six hours after substituting the medium in two replicate 24-well plates, one plate with medium without uridine (Uridine-), and the second plate with medium supplemented with 50 µg/ml uridine (Uridine+). The graphs show the average confluence ± SD at each time point (n=6 wells per cell line)."
NCBI gene IDs:
"HA: 
AOX: 2874947"
Figure legend: "(D) 1D BNGE, Western blot and immunodetection analyses of digitonin-solubilized mitochondria from WT and ∆4-CYB cybrids expressing AOXHA and their corresponding EV controls."
NCBI gene IDs:
"HA: 
AOX: 2874947
4-CYB: 4519"
Figure legend: "(F) Spectrophotometric kinetic measurements of cI activity in WT and ∆4-CYB AOXHA and EV samples, normalized by the percentage of citrate synthase (CS) activity. Results are expressed as mean ± SD (n=5 biological replicates). 2-way ANOVA with Tukey's multiple comparisons test **p=0.0077 (WT AOXHA vs. ∆4-CYB AOXHA); **p=0.0044 (∆4-CYB EV vs. ∆4-CYB AOXHA); ***p=0.0003; ****p&lt;0.0001."
NCBI gene IDs:
"HA: 
AOX: 2874947
4-CYB: 4519"
Figure legend: "(H) Respirometry analyses , in WT EV controls and AOXHA- expressing cells untreated or treated with 2.5 µM antimycin A for 7 days (+AA). Results are expressed as mean ± SD (n=4 biological replicates). 2-way ANOVA with Tukey's multiple comparisons test ****p&lt;0.0001."
NCBI gene IDs:
"AOX: 2874947"
Figure legend: "(I) 1D BNGE followed by cI-IGA (right) or Western blot and immunodetection of cIII2 subunit CYC1 (left) in digitonin-solubilized samples from WT EV controls and AOXHA- expressing cells untreated (-) or treated (+) with 2.5 µM antimycin A for 7 days."
NCBI gene IDs:
"HA: 
AOX: 2874947"
Figure legend: "(D) 1D BNGE, Western blot and immunodetection of two cIV subunits (MT-CO1 and COX7B) in samples from WT and ∆4-CYB cells solubilized with DDM and digitonin (Dig)."
NCBI gene IDs:
"4-CYB: 4519"
Figure legend: "(F) qPCR analysis of ATF3 induction following infection of HeLa cells with Listeria for 1-4 h. Values are means±s.e.m. n=3. Scale bars: 10 μm.Source data for this figure is available on the online supplementary information page."
NCBI gene IDs:
"ATF3: 467"
Figure legend: "(A) HeLa cells were infected with Listeria wild‐type (WT) or the LLO/PlcA/PlcB triple knockout (TKO) mutant strain for 0.5-4 h, and lysates were analysed by blotting using indicated antibodies."
NCBI gene IDs:
"LLO: 12552412
PlcA: 14021233
PlcB: 14020501"
Figure legend: "(B) qPCR analysis of ATF3 and IL‐8 induction following infection of HeLa cells with Listeria WT or TKO for 1-4 h. Values are means±s.e.m. n=3."
NCBI gene IDs:
"ATF3: 467
IL‐8: 3576"
Figure legend: "(A) qPCR analysis of ATF3 induction following infection of HeLa cells with WT, TKO, PlcA/B− or LLO− Listeria strains for 1-4 h. Values are means±s.e.m. n=3."
NCBI gene IDs:
"ATF3: 467
LLO: 12552412
PlcA: 14021233"
Figure legend: "(B) HeLa cells were infected with WT, PlcA/B− or LLO− Listeria strains for 0.5-4 h, and lysates were analysed by blotting using indicated antibodies."
NCBI gene IDs:
"LLO: 12552412
PlcA: 14021233"
Figure legend: "(C) HeLa cells left unstimulated (CTR) or infected with WT, PlcA/B− or LLO− Listeria strains for 1 h, analysed by IF using antibodies against mTOR and LAMP2. The arrow shows a Listeria vacuole positive for mTOR and LAMP2, and arrowheads indicate mTOR‐ and LAMP2‐positive late endosomes or lysosomes."
NCBI gene IDs:
"LLO: 12552412
PlcA: 14021233"
Figure legend: "(D, E) Percentage of cells infected with WT, PlcA/B− or LLO− Listeria strains displaying one or several LAMP2+ (D) or NDP52+ (E) Listeria vesicles. Values are means±s.e.m. n=3. **P0.01."
NCBI gene IDs:
"LLO: 12552412
PlcA: 14021233"
Figure legend: "(E) HeLa cells infected with Listeria WT, PlcA/B− or PlcA/B− ectopically expressing PlcA for 3 h, analysed by IF using an antibody against NDP52."
NCBI gene IDs:
"PlcA: 14021233"
Figure legend: "(F, G) Percentage of cells infected for 3 h with Listeria WT, PlcA/B− or PlcA/B− ectopically expressing PlcA displaying one or several NDP52+ granules (F) or bacteria entrapped in NDP52+ autophagosomes (G). Values are means±s.e.m. n=2. Scale bars: 5 μm."
NCBI gene IDs:
"PlcA: 14021233"
Figure legend: "(B) Murine embryonic fibroblasts (MEFs) from WT or ATG16L1‐deficient (ATG16L1 KO) mice infected with Listeria WT for 4 h were analysed by IF using an antibody against ubiquitinated proteins (Ubi)."
NCBI gene IDs:
"ATG16L1: 77040"
Figure legend: "(A) HeLa cells were transfected with GFP‐RFP‐LC3 and either were left uninfected (t=0) or were infected with Listeria WT or PlcA/B− for 1-4 h. GFP+ RFP+ and GFP− RFP+ puncta appear yellow and red, respectively. Percentage of cells infected with Listeria WT or PlcA/B− for 1-4 h displaying GFP− RFP+ red puncta were quantified. Values are means±s.e.m. n=3. **P0.01; ***P0.001."
NCBI gene IDs:
"PlcA: 14021233"
Figure legend: "(B) HeLa cells left unstimulated (CTR) or infected with Listeria WT or PlcA/B− for 4 h were lysed and PI3P levels measured by competitive ELISA."
NCBI gene IDs:
"PlcA: 14021233"
Figure legend: "(D) HeLa cells infected with Listeria PlcA/B− for 3 h, in the absence or presence of Wortmannin added during the last 10 min of infection, analysed by IF using antibodies against NDP52 and WIPI‐2. The arrow indicates an NDP52+ granule. Scale bars: 5 μm."
NCBI gene IDs:
"PlcA: 14021233"
Figure legend: "(A, B) HeLa cells infected for 4 h with Listeria WT expressing GFP (WT GFP), Listeria PlcA/B− expressing mCherry (PlcA/B− mCherry), or both Listeria strains at a 1:1 ratio, were analysed by IF using an antibody against NDP52 (A). (B) Quantification of the percentage of cells displaying NDP52+ PlcA/B− mCherry from the experiments described in (A), in cells infected with either PlcA/B− mCherry alone or WT GFP and PlcA/B−mCherry (co‐infection). Values are means±s.e.m. n=3. **P0.01."
NCBI gene IDs:
"PlcA: 14021233"
Figure legend: "(C) Murine embryonic fibroblasts (MEFs) from WT or ATG16L1‐deficient (ATG16L1 KO) mice infected for 4 h with WT GFP or Listeria PlcA/B− Listeria, either separately (Single) or in combination (Mix) were lysed and colony forming units (CFUs) determined on agar plates containing appropriate selection markers. Each point represents the value from individual independent experiments. **P0.01; *P0.05. Scale bars: 2.5 μm."
NCBI gene IDs:
"ATG16L1: 77040
PlcA: 14021233"
Figure legend: "G. Same as E but for the induced levels of either type I IFN (IFNβ1) or type III IFN (IFNλ)."
NCBI gene IDs:
"IFNβ1: 3456
type I IFN: 3456
type III IFN: 282616///282617
IFNλ: 101180976///282617///282616///282618"
Figure legend: "J-M. Percentage of stem cells (OLFM4) goblet cell (FGCBP), mature enterocytes (APOA4) and cells of the enterocyte lineage (FGCBP) from the total organoid cells population (black bar) in mock-treated organoids and after HAstV1 infection. The percentage of infected cells (red bars) and bystander cells (blue bars) within each cell type is shown. The data was obtained from multiplex in situ RNA hybridization in 2D organoids. n=10, mean ± SEM. Statistics show comparison of infected cells between mock-treated, 4h pi and 16h pi organoids. An Ordinary one-way ANOVA and Tukey's multiple comparisons test was used. n.s non significant, * p&lt;0.05, ** p&lt;0.01, *** p&lt;0.001."
NCBI gene IDs:
"APOA4: 337
FGCBP: 8857
OLFM4: 10562"
Figure legend: "A. One  image per condition was used to show the multiplex in situ RNA FISH. A representative region of the images was chosen and cropped in order to have a zoom-in of a specific area for better visualization. Shown are the enterocyte lineage marker FABP6 (green), HAstV1 infection (white), and CCL2 gene expression (red) of mock-treated and infected organoids. DAPI is in blue. White arrows show  co-localization of FABP6 and  CCL2 with HAstV1 signal. Scale bar 100µm."
NCBI gene IDs:
"CCL2: 6347
FABP6: 2172"
Figure legend: "K, Representative co-immunoprecipitation experiments in HEK293T cells that were transfected with GFP-USP42 or the indicated GFP-tagged control, together with the stated Wnt signalling component (N = 3 independent experiments). IgG heavy chain is indicated with an asterisk. Dvl1 functions as a positive control that binds both ZNRF3 and Axin1."
NCBI gene IDs:
"Axin1: 8312
Dvl1: 13542
USP42: 84132
ZNRF3: 84133"
Figure legend: "E,F, Co-immunoprecipitation experiments in HEK293T cells transfected with the constructs shown in (A). In (F) cells were co-transfected with DVL2 as indicated. Unspecific bands resulting from antibody cross-reaction are marked with asterisks. Representative blots of n ≥ 3 independent experiments are shown."
NCBI gene IDs:
"DVL2: 1856"
Figure legend: "E,F, qPCR analysis of USP42, LGR5 and AXIN2 expression levels in HCT116 cells. Data are displayed as mean ± SD and show n = 4 (E) or n = 3 (F) independent experiments."
NCBI gene IDs:
"AXIN2: 8313
LGR5: 8549
USP42: 84132"
Figure legend: "E-H, Immunofluorescence microscopy showing endogenous E-cadherin levels in wt and WLS (Evi) KO HCT116 cells upon transfection with siUSP42 (E), or electroporation with eSpCas9 empty plasmid (non-edited) or eSpCas9-USP42 gRNAs(G). Scale bar = 20 μm. In (F,G), quantification of the fluorescent signal (Alexa-488) in n ≥ 4 biological replicates with n ≥ 15 cells per replicate are shown."
NCBI gene IDs:
"Cas9: 
USP42: 84132
Evi: 79971
WLS: 79971"
Figure legend: "I-L, Spheroid formation experiments with HCT116 cells upon transfection with siUSP42 (I-K) or electroporation with eSpCas9 empty plasmid (non-edited) or eSpCas9-USP42 gRNAs (L). Scale bar = 500 μm. Where indicated, cells were treated with 5 μM IWP-2 or 20 μM LGK-974 (PORCN inhibitors). The median size was quantified for n ≥ 13 spheroids from a representative experiment repeated independently n ≥ 3 is shown."
NCBI gene IDs:
"Cas9: 
USP42: 84132"
Figure legend: "A, Representative images of mouse small intestinal organoids generated with empty (Non-edited) or USP42gRNA containing CRISPR-concatemers, and cultured for 3 days in matrigel with the indicated growth factors, or the Wnt secretion inhibitor IWP-2. EN, EGF and noggin. Note that knockout of Usp42 (Usp42 gRNAs) rendered the organoids insensitive to RSPO1 withdrawal. Scale bar = 1 mm."
NCBI gene IDs:
"USP42: 76800
Usp42: 76800"
Figure legend: "C, qPCR analysis of Lgr5 and Axin2 expression levels in first passage mouse intestinal organoids cultured in EN + 5% RSPO1."
NCBI gene IDs:
"Axin2: 12006
Lgr5: 14160"
Figure legend: "E) In vitro tumor T cell co-culture competition assay in IFNGR1-KO  D10 cells containing sgRNAs targeting TSC1, TSC2  or both. Statistics was done by Kruskal-Wallis test with Dunn's post hoc test. Error bars indicate SD of four biological replicates with different T cell  donors (n = 4). * P &lt; 0.05; ** P &lt; 0.01; *** P &lt; 0.001; **** P &lt; 0.0001."
NCBI gene IDs:
"IFNGR1: 3459
TSC1: 7248
TSC2: 7249"
Figure legend: "I) In vitro T cell co-culture competition assay of sgCtrl and sgTsc2-expressing lung cancer cell lines. Statistics was done by Mann-Whitney test. Error bars indicate SD of five biological replicates with different T cell  donors (n = 5). * P &lt; 0.05; ** P &lt; 0.01; *** P &lt; 0.001; **** P &lt; 0.0001."
NCBI gene IDs:
"Tsc2: 7249"
Figure legend: "B)  Tumor growth  upon adoptive cell transfer with Ctrl (n = 9) or MART-1 (n = 8) T cells. Data points represent average tumor volume, and error bars represent SEM."
NCBI gene IDs:
"MART-1: 2315"
Figure legend: "D) Quantification of the  in vivo competition assay (output) at end point by flow cytometry  analysis. Error bars indicate SD. Statistical analysis was performed by Mann-Whitney test. * P &lt; 0.05; ** P &lt; 0.01; *** P &lt; 0.001; **** P &lt; 0.0001. For this specific experiment, mice  that deceased before the analysis (n=1, Ctrl T cell  group), with failed ACT injection (n=1, MART-1 T cell  group) or were completely tumor-free after ACT (n=1, MART-1 T cell group) were excluded from the analysis."
NCBI gene IDs:
"MART-1: 2315"
Figure legend: "A)  Western blot  analysis of baseline mTOR  signaling in sgCtrl- or sgTsc2-expressing melanoma  and lung cancer  cell lines. Representative plot of 2-6 independent experiments. All blots  shown in this panel were run in parallel."
NCBI gene IDs:
"mTOR: 2475
Tsc2: 7249"
Figure legend: "E) Western blot  analysis of sgCtrl- or sgTSC2-expressing D10 melanoma  cells upon MART-1 T cell challenge for indicated time. Representative of three biological replicates with different T cell donors (n = 3)."
NCBI gene IDs:
"MART-1: 2315
TSC2: 7249"
Figure legend: "F) In vitro competition assay  of sgCtrl- and sgTsc2-expressing D10  cells co-cultured with MART-1 T cells  in the presence of necroptosis (Nec1-s, 20uM) or apoptosis inhibitors (Q-VD-Oph, 50uM), normalized to inhibitor plus Ctrl  T cell-treated groups, showing the net MART-1 T cell  effect. Statistical analysis was performed by one-way ANOVA with Holm-Sidak's multiple comparisons test. Error bars indicate SD of three biological replicates with different T cell  donors (n = 3). * P &lt; 0.05; ** P &lt; 0.01; *** P &lt; 0.001; **** P &lt; 0.0001."
NCBI gene IDs:
"MART-1: 2315
Tsc2: 7249"
Figure legend: "A) Cell viability analysis by CellTiter-Blue assay of sgCtrl- or sgTSC2-expressing D10 melanoma  and A549 lung cancer  cells treated with TRAIL   at indicated concentrations for three days. Statistical analysis was performed by two-tailed unpaired Student t test. For D10, error bars represent SD from three independent experiments (n = 3). For A549, error bars represent SD of pooled data from two independent experiments with three technical replicates each (n = 2). * P &lt; 0.05; ** P &lt; 0.01; *** P &lt; 0.001; **** P &lt; 0.0001."
NCBI gene IDs:
"TSC2: 7249"
Figure legend: "C) Flow cytometry analysis of TRAIL-R2  surface expression  level in multiple sgTSC2- expressing tumor cell lines compared to their sgCtrl-expressing controls. Statistical analysis was performed by two-way ANOVA with Sidak's multiple comparisons test. Error bars represent SD of three biological replicates (n = 3). * P &lt; 0.05; ** P &lt; 0.01; *** P &lt; 0.001; **** P &lt; 0.0001."
NCBI gene IDs:
"TSC2: 7249"
Figure legend: "D) In vitro competition assay  performed by mixing control and tumor cells with ablation for either TSC2, TRAIL receptors (TNFRSF10A  and TNFRSF10B), or both in a co-culture with MART-1 T cells. Statistical analysis was performed with a one-way ANOVA, followed by a Tukey post-hoc test. Error bars indicate SD of four biological replicates with different T cell donors. * P &lt; 0.05; ** P &lt; 0.01; *** P &lt; 0.001; **** P &lt; 0.0001."
NCBI gene IDs:
"MART-1: 2315
TNFRSF10A: 8797
TNFRSF10B: 8795
TSC2: 7249"
Figure legend: "C) TSC2  immune challenge signature expression  in cohorts of patients  after ICB treatment. Early during treatment (EDT), anti-PD-1 + anti-CTLA-4, and anti-PD-1 alone treatment cohorts. Statistical significance was calculated with Student t test for normally distributed data, or with Mann-Whitney test for non-normally distributed data. * P &lt; 0.05; ** P &lt; 0.01; *** P &lt; 0.001; **** P &lt; 0.0001. Partial response and complete response (PRCR) are defined as responder (R); stable disease (SD) and progressive disease (PD) are defined as non-responder (NR)."
NCBI gene IDs:
"TSC2: 7249"
Figure legend: "Representative flow cytometric analysis of BAL from Csf2ra-/- recipients 8 weeks after neonatal i.n. transfer of YS EMP from CD45.1+ E10.5 embryos, 8-week old un-transferred Csf2ra-/-, and WT (CD45.2) mice. Pre-gated viable CD45+ singlets."
NCBI gene IDs:
"Csf2ra: 12982"
Figure legend: "Numbers of EMP effectively transferred in neonates (white circle) and numbers of EMP-derived AM (red circles) in BAL and lung of adult Csf2ra-/- recipients 8 weeks after transfer (n = 5 mice)."
NCBI gene IDs:
"Csf2ra: 12982"
Figure legend: "Numbers of EMP-derived AM in the BAL (left) and lung (right) (C) in the BAL of adult Csf2ra-/- recipients 8 weeks after transfer (n = 5 mice). Age-matched Csf2ra-/- (KO) (n = 3 mice) and WT (n = 3 mice) were included as negative and positive controls."
NCBI gene IDs:
"Csf2ra: 12982"
Figure legend: "total protein in the BAL of adult Csf2ra-/- recipients 8 weeks after transfer (n = 5 mice). Age-matched Csf2ra-/- (KO) (n = 3 mice) and WT (n = 3 mice) were included as negative and positive controls."
NCBI gene IDs:
"Csf2ra: 12982"
Figure legend: "total eFluor780+ events (E) in the BAL of adult Csf2ra-/- recipients 8 weeks after transfer (n = 5 mice). Age-matched Csf2ra-/- (KO) (n = 3 mice) and WT (n = 3 mice) were included as negative and positive controls."
NCBI gene IDs:
"Csf2ra: 12982"
Figure legend: "Representative flow cytometric analysis (left) and percentage of donor-derived AM (right) in the BAL and lung from Csf2ra-/- recipients 8 weeks after neonatal transfer of 1:1:1 mixture with E17.5 fetal liver (FeLi) monocytes (Mo) (CD45.1+), E14.5 FeLi Mo (CD45.1+CD45.2+), and E10.5 YS EMP (CD45.2+) (F) or E17.5 fetal lung (FeLu) Mo (CD45.1+), E14.5 FeLu Mo (CD45.1+CD45.2+), and E10.5 YS EMP (CD45.2+) (G) (n = 3 mice)."
NCBI gene IDs:
"Csf2ra: 12982"
Figure legend: "Representative flow cytometric analysis (left) and percentage of donor-derived AM (right) in the BAL (top) and lung (bottom) from Csf2ra-/- recipients 10 weeks after neonatal transfer of 1:1 mixture with CD45.1+ E14.5 FeLi Mo and CD45.2+ E14.5 FeLi pMΦ (Group 1) or CD45.1+ E14.5 FeLi pMΦ and CD45.2+ FeLi Mo (Group 2) (n = 3 mice). The expansion fold of donor cells in Csf2ra-/- recipients 10 weeks after neonatal transfer of cells described above in A (n = 3 mice)."
NCBI gene IDs:
"Csf2ra: 12982"
Figure legend: "Representative flow cytometric analysis (left) and percentage of donor-derived AM (right) of BAL and lung from Csf2ra-/- recipients 8 weeks after neonatal transfer of 1:1:1 mixture with CD45.1+ E17.5 FeLi pMΦ, CD45.1+CD45.2+ E14.5 FeLi pMΦ, and CD45.2+ E10.5 YS pMΦ (n = 3 mice). Total numbers of donor-derived AM in the BAL and lung of adult Csf2ra-/- recipients 8 weeks after transfer of cells described above in C (n = 3 mice). Age-matched Csf2ra-/- (KO) (n = 3 mice) and WT (n = 3 mice) were included as negative and positive controls."
NCBI gene IDs:
"Csf2ra: 12982"
Figure legend: "Representative flow cytometric analysis (left) and percentage of donor-derived AM (right) of BAL and lung from Csf2ra-/- recipients 8 weeks after neonatal transfer of 1:1:1 mixture with CD45.1+ E17.5 FeLu pMΦ, CD45.1+CD45.2+ E14.5 FeLu pMΦ, and CD45.2+ E10.5 YS pMΦ (n = 3 mice). Total numbers of donor-derived AM in the BAL and lung of adult Csf2ra-/- recipients 8 weeks after transfer of cells described above in E (n = 3 mice). Age-matched Csf2ra-/- (KO) (n = 3 mice) and WT (n = 3 mice) were included as negative and positive controls."
NCBI gene IDs:
"Csf2ra: 12982"
Figure legend: "Representative flow cytometric analysis (left) and percentage of donor-derived AM (right) in the BAL and lung from Csf2ra-/- recipients 7 weeks after neonatal transfer of 1:1 mixture with CD45.1+ E14.5 FeLi Mo from WT embryos and CD45.2+ E14.5 FeLi pMΦ from Myb-/- (G) or Myb+/+ (H) embryos (n = 3 mice)."
NCBI gene IDs:
"Csf2ra: 12982
Myb: 17863"
Figure legend: "Representative flow cytometric analysis of BAL from Csf2ra-/- recipients 7 weeks after neonatal i.n. transfer of pMΦ or fetal Mo from CD45.1+ E14.5 fetal livers, 7-week old un-transferred Csf2ra-/-, WT (CD45.2) mice. Pre-gated viable CD45+ singlets."
NCBI gene IDs:
"Csf2ra: 12982"
Figure legend: "Numbers of donor-derived AM in the BAL (left) and lung (right) of adult Csf2ra-/- recipients 7 weeks (B) or 1 year (C) after neonatal transfer of cells described in A (n = 7 mice). Age-matched Csf2ra-/- (KO) (n = 5 mice) and WT (n = 4 mice) were included as negative and positive controls."
NCBI gene IDs:
"Csf2ra: 12982"
Figure legend: "Total protein in the BAL of adult Csf2ra-/- recipients 7 weeks after neonatal transfer of cells described in A (n = 7 mice). Age-matched Csf2ra-/- (KO) (n = 5 mice) and WT (n = 4 mice) were included as negative and positive controls."
NCBI gene IDs:
"Csf2ra: 12982"
Figure legend: "total eFluor780+ events in the BAL of adult Csf2ra-/- recipients 7 weeks after neonatal transfer of cells described in A (n = 7 mice). Age-matched Csf2ra-/- (KO) (n = 5 mice) and WT (n = 4 mice) were included as negative and positive controls."
NCBI gene IDs:
"Csf2ra: 12982"
Figure legend: "Total protein in the BAL of adult Csf2ra-/- recipients 1 year (F, G) after neonatal transfer of cells described in A (n = 7 mice). Age-matched Csf2ra-/- (KO) (n = 5 mice) and WT (n = 4 mice) were included as negative and positive controls."
NCBI gene IDs:
"Csf2ra: 12982"
Figure legend: "total eFluor780+ events in the BAL of adult Csf2ra-/- recipients 1 year (F, G) after neonatal transfer of cells described in A (n = 7 mice). Age-matched Csf2ra-/- (KO) (n = 5 mice) and WT (n = 4 mice) were included as negative and positive controls."
NCBI gene IDs:
"Csf2ra: 12982"
Figure legend: "Body weight measurement of influenza virus (20 pfu of PR8 strain)-infected Csf2ra-/- recipients 24 weeks after neonatal transfer of pMΦ or fetal Mo from E14.5 fetal livers (n = 7 mice from each transferred group), 24-week old un-transferred Csf2ra-/- (n = 5), and WT (n = 8)."
NCBI gene IDs:
"Csf2ra: 12982"
Figure legend: "temperature (B) measurement of influenza virus (20 pfu of PR8 strain)-infected Csf2ra-/- recipients 24 weeks after neonatal transfer of pMΦ or fetal Mo from E14.5 fetal livers (n = 7 mice from each transferred group), 24-week old un-transferred Csf2ra-/- (n = 5), and WT (n = 8)."
NCBI gene IDs:
"Csf2ra: 12982"
Figure legend: "Oxygen (O2) saturation in influenza-infected mice described in A, B 7 days post-infection (p.i.) (n = 5 mice from Csf2ra-/- group; n = 7 mice from each transferred group; n=8 from WT group)."
NCBI gene IDs:
"Csf2ra: 12982"