EMBO/SourceData huggingface dataset:
Figure legend: "Quantification of the Filipin III intensity at primary cilia from (A). Rapamycin-induced peroxisome targeting to the ciliary pocket restored the insufficiency of ciliary cholesterol in the Rab10−/−and KIFC3−/−hTERT-RPE1 cells, but not in ORP3−/−and EHD3−/− hTERT-RPE1 cells (*p&lt;0.05, **p&lt;0.01, ***p&lt;0.001: one-way ANOVA with Tukey's HSD, n=3: 35-40 cells per experiment). In the boxplot, medians, 25th/75th percentile and min/max were represented by the central lines, the box limits, and the whiskers/error bars, representatively."
NCBI gene IDs:
"EHD3: 30845
KIFC3: 3801
ORP3: 26031
Rab10: 10890"
Figure legend: "(A) PolyP accumulation in vivo. The polyP content of wild-type cells was set to 100%. Knockout of Vtc1, Vtc2, Vtc3 or Vtc4 impacts cellular polyP levels. Data show the mean±s.d (biological replicates n=3)."
NCBI gene IDs:
"Vtc1: 856803
Vtc2: 850544
Vtc3: 856088
Vtc4: 853441"
Figure legend: "Cellular polyP content of Vtc4p point mutants expressed under the control of their native promoters in the vtc4Δ background. Data show the mean±s.d (biological replicates n=3)."
NCBI gene IDs:
"vtc4: 853441
Vtc4: 853441"
Figure legend: "Cellular polyP content of VTC4 and VTC3 point mutants expressed under the control of their native promoters in the vtc4Δ and vtc3Δ(vtc2Δ) backgrounds, respectively. Data show the mean±s.d (biological replicates n=3)."
NCBI gene IDs:
"vtc2: 850544
VTC3: 856088
vtc3: 856088
VTC4: 853441
vtc4: 853441"
Figure legend: "Cellular polyP content of VTC4 point mutants expressed under the control of their native promoters in the vtc4Δ backgrounds. Data show the mean±s.d (biological replicates n=3)."
NCBI gene IDs:
"VTC4: 853441
vtc4: 853441"
Figure legend: "PolyP synthesis by isolated vacuoles carrying Vtc4(ΔSPX)/Vtc3/Vtc1 complex, Vtc4/Vtc3(ΔSPX)/Vtc1 complex or Vtc4/Vtc3/Vtc1 complex in the absence or presence of 1 μM 5-InsP7 or 1,5-InsP8 in vitro. The reaction system is detailed in Methods. Data show the mean±s.d (biological replicates n=3)."
NCBI gene IDs:
"Vtc1: 856803
Vtc3: 856088
Vtc4: 853441"
Figure legend: "PolyP synthesis by isolated vacuoles carrying Vtc4/Vtc3(R223E)/Vtc1 complex, Vtc4/Vtc3(R226E)/Vtc1 complex or Vtc4/Vtc3/Vtc1 complex in the absence or presence of 1 μM 5-InsP7 or 1,5-InsP8 in vitro. The reaction system is detailed in Methods. Data show the mean±s.d (biological replicates n=3)."
NCBI gene IDs:
"Vtc1: 856803
Vtc3: 856088
Vtc4: 853441"
Figure legend: "Cellular polyP content of VTC4, VTC3 and VTC1 point mutants expressed under the control of their native promoters in the vtc4Δ, vtc3Δ(vtc2Δ) and vtc1Δ backgrounds, respectively. Δ indicates that the entire subunit was knocked out. FL indicates full length, indicating that the subunit has not been modified in any way. Data show the mean±s.d (biological replicates n=3)."
NCBI gene IDs:
"VTC1: 856803
vtc1: 856803
vtc2: 850544
VTC3: 856088
vtc3: 856088
VTC4: 853441
vtc4: 853441"
Figure legend: "(F) NO donors increased EGFP-HDQ74 aggregates in a dose-dependent manner in EGFP-HDQ74-transfected Atg5+/+, but not in Atg5−/−, MEFs. Atg5−/− MEFs had more EGFP-HDQ74 aggregates than Atg5+/+ MEFs."
NCBI gene IDs:
"Atg5: 11793
HD: 15194"
Figure legend: "(D and E) Immunoprecipitation with anti-Flag M2 affinity agarose gel and immunoblotting with anti-Myc antibody shows that NO donors increased the interaction of Flag-Beclin 1 with WT Myc-Bcl-2 (D), but not with AAA Myc-Bcl-2 (E), in HeLa cells transfected with WT Myc-Bcl-2 (D) or AAA Myc-Bcl-2 (E) along with either empty Flag or Flag-Beclin 1. Asterisk denotes IgG band (E)."
NCBI gene IDs:
"Bcl-2: 596
Beclin 1: 8678"
Figure legend: "(F) Immunoprecipitation with anti-Flag M2 affinity agarose gel and immunoblotting with anti-Vps34 antibody shows that NO donors decreased Flag-Beclin 1-hVps34 interaction in HeLa cells transfected with hVps34 along with either empty Flag or Flag-Beclin 1."
NCBI gene IDs:
"Beclin 1: 8678"
Figure legend: "(G) Immunoprecipitation with anti-Flag M2 affinity agarose gel and immunoblotting with anti-Vps34 antibody shows that AAA Myc-Bcl-2 decreased Flag-Beclin 1-hVps34 interaction in the presence (right panel) or absence (left panel) of DETA NONOate in HeLa cells transfected with hVps34 along with either empty Flag or Flag-Beclin 1, and with pcDNA3.1 or AAA Myc-Bcl-2. Graphical data denote mean ± SEM."
NCBI gene IDs:
"Bcl-2: 596
Beclin 1: 8678"
Figure legend: "(A) Immunoblot analysis with anti-LC3 antibody shows that DETA NONOate reduced autophagosome synthesis in bafilomycin A1-treated WT Bcl-2 and AAA Bcl-2 MEFs."
NCBI gene IDs:
"Bcl-2: 596"
Figure legend: "(B and C) NO donors decreased EGFP-LC3 vesicles in EGFP-LC3-transfected WT Bcl-2 and AAA Bcl-2 MEFs (C). Images were acquired by a confocal microscope (B). WT Bcl-2 and AAA Bcl-2 MEFs were analyzed separately."
NCBI gene IDs:
"Bcl-2: 12043"
Figure legend: "(D) NO donors increased EGFP-HDQ74 aggregates in EGFP-HDQ74-transfected WT Bcl-2 and AAA Bcl-2 MEFs. WT Bcl-2 and AAA Bcl-2 MEFs were analyzed separately."
NCBI gene IDs:
"Bcl-2: 12043
HD: 15194"
Figure legend: "(E) Immunoblot analysis with anti-LC3 antibody shows that DETA NONOate reduced autophagosome synthesis in bafilomycin A1-treated WT Jnk, Jnk1−/−, and Jnk2−/− MEFs."
NCBI gene IDs:
"Jnk1: 26419
Jnk2: 26420"
Figure legend: "(H) Immunoblot analyses with anti-phospho-S6K and anti-phospho-S6 antibodies show that NO donors activated mTORC1 in WT Bcl-2 and AAA Bcl-2 MEFs."
NCBI gene IDs:
"Bcl-2: 12043"
Figure legend: "(A) Immunoblot analyses with anti-phospho-S6K and anti-phospho-S6 antibodies show that NO donors activated mTORC1 in Tsc2+/+ MEFs, but not in Tsc2−/−, MEFs."
NCBI gene IDs:
"Tsc2: 22084"
Figure legend: "(C) Immunoblot analyses with anti-phospho-S6K and anti-phospho-S6 antibodies show that NO donors activated mTORC1 in Ikkβ+/+ MEFs, but not in Ikkβ−/− MEFs."
NCBI gene IDs:
"Ikkβ: 16150"
Figure legend: "(D) Immunoblot analysis with anti-LC3 antibody shows that DETA NONOate reduced autophagosome synthesis in bafilomycin A1-treated Tsc2+/+ and Tsc2−/− MEFs."
NCBI gene IDs:
"Tsc2: 22084"
Figure legend: "(E) DETA NONOate decreased EGFP-LC3 vesicles in Tsc2+/+ and Tsc2−/−MEFs transfected with EGFP-LC3, along with either pcDNA3.1 or AAA Myc-Bcl-2. Although it further reduced EGFP-LC3 vesicles in Tsc2+/+MEFs expressing AAA Myc-Bcl-2 compared to mock-transfected Tsc2+/+MEFs, this effect was not seen in Tsc2−/−MEFs. Tsc2+/+ and Tsc2−/−MEFs were analyzed separately. Graphical data denote mean ± SEM."
NCBI gene IDs:
"Bcl-2: 12043
Tsc2: 22084"
Figure legend: "(A-D) Immunoblot analyses with anti-LC3, along with anti-nNOS, anti-iNOS, and anti-eNOS antibodies, show decreased LC3-II levels in stable HEK293 cell lines overexpressing nNOS (A and D), iNOS-GFP (B and D), or eNOS (C and D) compared to HEK293 control cells in the presence or absence of bafilomycin A1."
NCBI gene IDs:
"nNOS: 4842
iNOS: 4843
eNOS: 4846"
Figure legend: "(A-F) Immunoblot analyses with anti-nNOS, anti-iNOS, anti-eNOS, anti-phospho-JNK1, anti-phospho-Bcl-2, anti-phospho-S6K, and anti-phospho-S6 antibodies show that stable HEK293 cell lines overexpressing nNOS (A and D), iNOS-GFP (B and E), or eNOS (C and F) inhibited both the JNK1-Bcl-2 and mTORC1 pathways compared to the HEK293 control cells under basal (FM) (A-C) or starvation (HBSS) (D-F) conditions. Graphical data denote mean ± SEM."
NCBI gene IDs:
"nNOS: 4842
iNOS: 4843
eNOS: 4846"
Figure legend: "(D) L-NAME reduced EGFP-HDQ74 aggregates in EGFP-HDQ74-transfected Atg5+/+, but not in Atg5−/−, MEFs."
NCBI gene IDs:
"Atg5: 11793
HD: 15194"
Figure legend: "(E) Drosophila expressing mutant huntingtin exon 1 (Q120) shows a significant decrease in neurodegeneration (p &lt; 0.001, paired t test) upon L-NAME treatment compared to DMSO."
NCBI gene IDs:
"huntingtin: 43392"
Figure legend: "(F) Expression of an endogenous negative regulator of NOS activity (NOS4) significantly attenuates neurodegeneration (p &lt; 0.05, paired t test) in Drosophila expressing mutant huntingtin exon 1 (Q120)."
NCBI gene IDs:
"NOS4: 
huntingtin: 43392"
Figure legend: "(G-I) Images from the retina of transgenic HD zebrafish show mutant huntingtin aggregates (arrows) (G). Treatment with rapamycin or L-NAME reduced the number of aggregates (H). L-NAME did not reduce aggregates in the presence of NH4Cl, which increased aggregate count (I)."
NCBI gene IDs:
"huntingtin: 30214"
Figure legend: "Time lapse images of T6SS activity in tagged parental strain (VipA-mCherry2) and ∆tssA mutant background. The parental strain forms multiple dynamic structures per cell. ∆tssA mutant predominantly forms dynamic sheath spots (white arrow) and few WT-like sheath structures (blue arrow). Scale bars: 2 µm."
NCBI gene IDs:
"tssA: 2612844"
Figure legend: "H2-T6SS dynamics in tagged parental strain (∆retS TssB2-mCherry2, referred to as WT H2) and ΔtssA2PA strain. Blue arrow indicates extending and contracting T6SS sheath structures, white arrow points to dynamic sheath spots. The WT H2 strain harbors multiple dynamic sheath structures per cell, while the ΔtssA2PA strain displays very few dynamic spots or extended and contracting structures. Scale bars: 2 µm."
NCBI gene IDs:
"retS: 877881
tssA: 2612844"
Figure legend: "Fluorescence microscopy of T6SS dynamics in a double tagged strain (∆retS TssB2-mCherry2 TssA2PA-mNeonGreen). White arrow indicates full cycle of extending and contracting T6SS sheath. Scale bar: 1 µm."
NCBI gene IDs:
"retS: 877881"
Figure legend: "The ∆tagA mutant displays long and bent but still dynamic structures. Scale bar: 2 µm. Frames from time lapse movies showing sheath dynamics in the ∆tagA mutant. Sheath polymerization does not stop when the distal end reaches opposing membrane (white arrow). Continued polymerization causes the sheath to tilt and distal end to move towards the bacterial cell pole, ultimately effecting bending of the whole structure. C. Sheath detaches from its membrane anchor (orange arrow), keeps extending to maximum cell length and then contracts. Scale bars: 1 µm."
NCBI gene IDs:
"tagA: 2612830"
Figure legend: "H1-T6SS dynamics in tagged parental strain (∆retS TssB1-mCherry2, referred to as WT H1) and ΔtssA1PA strain. Blue arrow indicates extending and contracting T6SS sheath structures, white arrow points to dynamic sheath spots. Scale bars: 2 µm."
NCBI gene IDs:
"retS: 877881
tssA: 2612844"
Figure legend: "Fluorescence microscopy of T6SS dynamics in ∆retS TssB1-mCherry2 strain harboring pPSV35 plasmid with TssA1PA-mNeonGreen fusion. Scale bar: 2 µm."
NCBI gene IDs:
"retS: 877881"
Figure legend: "(B) Detection of  S-acylation  of BSKs in plant cells. 12 BSK proteins were fused with GFP  at their C terminus and expressed in Arabidopsis protoplasts  for 24 hours and the cells were collected for Biotin-switch assay. Cell lysates are shown as input, and the  S-acylated proteins enriched on the resin which is dependent on hydroxylamine  (NH2OH) are indicated as pulldown  samples. All images of anti-GFP immunoblots  are representative of three biological independent experiments."
NCBI gene IDs:
"GFP: "
Figure legend: "(D) Effect of  2-BP on subcellular localization  of BSK1  in  root cells of intact transgenic plants. Six-day-old seedlings of 35S:BSK1-GFP  were treated with 80 μM 2-BP for 2 h; DMSO  was supplemented in the control samples. Representative GFP  (green) and merged (with bright field) signals from three biologically independent experiments are shown. Bars, 10 µm."
NCBI gene IDs:
"GFP: 
BSK1: 829676"
Figure legend: "(A, B) Identification of  S-acylation sites on BSK1  and BSK3. The wild-type (WT) and indicated mutant versions of BSK1-GFP  (A) and BSK3-GFP  (B) were expressed in protoplasts  for biotin-switch assay. Images of anti-GFP immunoblots  are representative of three biological independent experiments."
NCBI gene IDs:
"GFP: 
BSK1: 829676
BSK3: 828025"
Figure legend: "(E, F) Effect of S-acylation site mutation on the localization  of BSK1  and BSK3  in intact root cells. Six-day-old seedlings  of the WT or S-acylation site mutant versions of 35S:BSK1-GFP  (E) and 35S:BSK3-GFP  (F) were subjected to localization  analysis using confocal microscopy. Representative GFP  (green) and merged (with bright field) signals in root cells  from three biologically independent experiments are shown. Bars, 10 µm."
NCBI gene IDs:
"GFP: 
BSK1: 829676
BSK3: 828025"
Figure legend: "(G, H) The effect of S-acylation site mutations on the localization  of BSK1  and BSK3  in a cell fractionation assay. The WT and mutant versions of BSK1-GFP  (G) and BSK3-GFP  (H) were expressed in protoplasts  and the total proteins (T) were divided into soluble  (S) and pellet  (P) fractions using ultra-centrifugation. Representative immunoblotting  data using an anti-GFP  antibody are shown."
NCBI gene IDs:
"GFP: 
BSK1: 829676
BSK3: 828025"
Figure legend: "(B) Co-IP  result for measuring the function of BSK1 S-acylation in its interaction  with BRI1. Free GFP  (negative control) or the WT/C3S version of BSK1-GFP  was co-expressed with BRI1-MYC  in plant cells for co-IP using an anti-GFP  resin. The proteins in the input and IP  samples were detected via immunoblots  with anti-MYC  or anti-GFP  antibodies."
NCBI gene IDs:
"GFP: 
MYC: 
BRI1: 830095
BSK1: 829676"
Figure legend: "(E, F) The effect of S-acylation on the function of BSK3   in BR responses. The WT or 3M (C5, 10, 11S) version of BSK3  driven by a native promoter was introduced into the bsk3-1 mutant to generate complementation lines. The phenotype of 8-day-old seedlings  with and without 100 nM of BL  treatment is shown in (E). Bars, 1 cm. Quantitative data of hypocotyl  and root  length under the control or BL  treatment condition are shown in (F). Data are means ± SD from 20 seedlings  in four independent experiments. Significance analysis using one-way ANOVA followed by Tukey's multiple comparison test is shown in different lower-case letters (P &lt; 0.05)."
NCBI gene IDs:
"BSK3: 828025
bsk3: 828025"
Figure legend: "(C) Detection of the regulation of BSK1 S-acylation mediated by SA. BSK1-GFP  was expressed in protoplasts  with 0-, 20-, 40-, or 60-min treatment with 100 µM of SA. Cells were collected for S-acylation  detection in a biotin-switch assay. Representative immunoblots  are shown in the top graph. Immunoblot  signals were quantified by ImageJ and the  S-acylation levels were calculated from relative signals ([pulldown+/input+] - [pulldown-/ input-]). The relative S-acylation level of the 0 min sample was set to 1. The data in the bottom graph are means ± SD from three biologically independent experiments. Significance analysis using one-way ANOVA followed by Tukey's multiple comparison test is shown in different lower-case letters (P &lt; 0.05)."
NCBI gene IDs:
"GFP: 
BSK1: 829676"
Figure legend: "(D, E) Effect of SA  on the physiological function of BSK1. The indicated seeds  were germinated on the MS medium with or without 40 µM of SA. The photographs were taken 8 days after germination. Representative images are shown in (D). Bars, 1 cm. Quantitative data of fresh weight  (per 10 seedlings) of different genotypes are shown in (E). Data are means ± SD from three biologically independent experiments. Significance analysis using one-way ANOVA followed by Tukey's multiple comparison test is shown in different lower-case letters (P &lt; 0.05)."
NCBI gene IDs:
"BSK1: 829676"
Figure legend: "(A) Identification of the de-S-acylation  enzyme of BSK1. BSK1-RFP  was co-overexpressed with 11 GFP-fused ABAPT members in protoplasts  respectively (free GFP  was used as a control). Cells with both RFP  and GFP  signals were used for analyzing the localization  of BSK1-RFP. The predominant localization  patterns of BSK1-RFP  are shown. The RFP  (magenta), GFP  (green), and the merged (with bright field in gray) signals are included in the top graph. Bars, 5 µm. The quantitative data of the percentages of cells with mislocalization of BSK1-GFP  (100 cells for each sample) are shown in the bottom graph. Data are means ± SD from three biologically independent experiments. Significance analysis using one-way ANOVA followed by Tukey's multiple comparison test is shown in different lower-case letters (P &lt; 0.05)."
NCBI gene IDs:
"RFP: 
GFP: 
BSK1: 829676"
Figure legend: "(B) Detection of the effect of ABAPT11  on the localization  of BSK members. 12 BSK-GFP  fusion proteins were co-overexpressed with RFP  (control) or ABAPT11-RFP in protoplasts. BSK-GFP localization  in cells with both RFP  and GFP  signals was recorded. Representative localization  patterns of BSK-GFP  with RFP  or ABAPT11-RFP  are shown in the top graph. Bars, 5 µm. Quantitative data of the percentages of cells with localization  changes of BSK-GFP  (100 cells for each sample) are shown in the bottom graph. Data are means ± SD from three biologically independent experiments. ****P &lt; 0.0001, ***P &lt; 0.001, *P &lt; 0.05, n.s. (no significance) P &gt; 0.05, Student's t-test (unpaired, two-tailed)."
NCBI gene IDs:
"RFP: 
GFP: 
ABAPT11: 832174"
Figure legend: "(B) Effect of ABAPT11  overexpression on the BSK1 membrane  association in a cell fractionation assay. BSK1-GFP  was expressed in protoplasts  with or without ABAPT11  overexpression. Total proteins (T) were separated into soluble  (S) and pellet  (P) fractions using ultra-centrifugation. A representative immunoblot  using an anti-GFP  antibody is shown. The percentages of BSK1-GFP  in the soluble fraction were calculated from relative immunoblotting  signals (S/[S+P]). Data are means ± SD from three biologically independent experiments. **P &lt; 0.01, Student's t-test (unpaired, two-tailed)."
NCBI gene IDs:
"GFP: 
BSK1: 829676
ABAPT11: 832174"
Figure legend: "(C, D) Effect of ABAPT11  overexpression on S-acylation of BSK1  and BSK3. The S-acylation level of BSK1-GFP  (C) and BSK3-GFP  (D) with or without ABAPT11  overexpression in protoplasts  was detected in a biotin-switch assay. Representative immunoblotting image is shown in the top graphs. Quantification of relative  S-acylation levels was included in the bottom graphs. Immunoblotting  signals were quantified by ImageJ and the S-acylation levels were calculated from relative signals ([pulldown+/input+] - [pulldown-/ input-]). The relative S-acylation  level of the control sample was set to 1. Data are means ± SD from three biologically independent experiments. **P &lt; 0.01, Student's t-test (unpaired, two-tailed)."
NCBI gene IDs:
"ABAPT11: 832174"
Figure legend: "(A, B) Expression of ABAPT11  during SA  treatment. (A) Seven-day-old wild-type (WT) seedlings  were treated with 100 µM SA  for 0, 10, 20, 30, 40, 50, and 60 min before collection for RNA preparation and RT-qPCR to detect the transcript level of ABAPT11. (B) Transcript levels of ABAPT11  in wild-type (WT) and npr1  mutant 7-day-old seedlings  with or without 100 µM SA  for 20 min. ACTIN2  was used as an internal control. Data are means ± SD from triplicated replications in an experiment; the pattern was consistent in three biologically independent experiments. Significance analysis using one-way ANOVA followed by Tukey's multiple comparison test is shown in different lower-case letters (P &lt; 0.05)."
NCBI gene IDs:
"ACTIN2: 821411
npr1: 842733
ABAPT11: 832174"
Figure legend: "(C) Accumulation of ABAPT11  proteins in the SA  response. Seven-day-old seedlings  expressing ABAPT11-YFP  under its own promoter were treated with 100 µM SA  for 0, 20, 40, and 60 min before collection for immunoblotting  with an anti-GFP  antibody. Coomassie blue staining of total proteins was used as the loading control. Quantitative relative protein levels (YFP  / loading) from three biologically independent experiments are shown in the bottom graph. Significance analysis using one-way ANOVA followed by Tukey's multiple comparison test is shown in different lower-case letters (P &lt; 0.05)."
NCBI gene IDs:
"YFP: 
ABAPT11: 832174"
Figure legend: "(D) The  S-acylation level of BSK1  in the ABAPT11  mutant during SA  treatment. BSK1-GFP  was expressed in WT or abapt11-1 mutant cells (with or without 100 µM SA  treatment for 40 min) for S-acylation  measurement in a biotin-switch assay. Representative immunoblots  are shown in the top graph. The immunoblotting  signals were quantified by ImageJ and the  S-acylation levels were calculated from relative signals ([pulldown+/input+] - [pulldown-/ input-]). The relative S-acylation level of the wild-type sample without SA  treatment was set to 1. Data are means ± SD from three biologically independent experiments. Significance analysis using one-way ANOVA followed by Tukey's multiple comparison test is shown in different lower-case letters (P &lt; 0.05)."
NCBI gene IDs:
"GFP: 
BSK1: 829676
ABAPT11: 832174
abapt11: 832174"
Figure legend: "(G, Confirmation of the SA-induced BSK1  translocation which is mediated by ABAPT11. BSK1-GFP  was expressed in WT or abapt11-1 mutant cells, with or without 100 µM SA  treatment for 40 min. Total proteins (T) were separated into soluble  (S) and pellet  (P) fractions using ultra-centrifugation. Representative immunoblots  using an anti-GFP  antibody are shown in (G)."
NCBI gene IDs:
"GFP: 
BSK1: 829676
abapt11: 832174
ABAPT11: 832174"
Figure legend: "(A, B) Effect of BL  and SA on hypocotyl  development in ABAPT11  mutants. Seeds  were germinated on regular medium (Control), medium containing 80 nM BL, medium containing 40 µM SA, or medium containing both 80 nM BL  and 40 µM SA. Hypocotyl  length was measured 8 days after germination. Representative images from four independent experiments are shown in (A). Quantitative data of hypocotyl  lengths are shown in (B). Data are means ± SD from 20 seedlings  in four independent experiments. Significance analysis using one-way ANOVA followed by Tukey's multiple comparison test is shown in different lower-case letters (P &lt; 0.05)."
NCBI gene IDs:
"ABAPT11: 832174"
Figure legend: "D) Effect of BL  and SA  on root  development of ABAPT11  mutants. Four days after germination, seedlings  of WT, abapt11-1, and abapt11-2 were transferred onto a regular medium (Control), medium containing 15 nM BL, medium containing 20 µM SA, or medium containing both 15 nM BL  and 20 µM SA. Quantitative data of root  elongation 5 days after transferring are shown in (D). Data are means ± SD from 20 seedlings  in four independent experiments. Significance analysis using one-way ANOVA followed by Tukey's multiple comparison test is shown in different lower-case letters (P &lt; 0.05)."
NCBI gene IDs:
"ABAPT11: 832174
abapt11: 832174"
Figure legend: "Neurosphere assays were performed using mouse E14.5 primary neural progenitors transduced with a retroviral vector expressing Ttyh1"
NCBI gene IDs:
"Ttyh1: 57776"
Figure legend: "XTT assays were performed using mouse E14.5 primary neural progenitors transduced with a retroviral vector expressing Ttyh1"
NCBI gene IDs:
"Ttyh1: 57776"
Figure legend: "Neurosphere assays were performed using mouse E14.5 primary neural progenitors transduced with a short hairpin RNA specific to Ttyh1 (shTtyh1)"
NCBI gene IDs:
"Ttyh1: 57776"
Figure legend: "XTT assays were performed using mouse E14.5 primary neural progenitors transduced with a short hairpin RNA specific to Ttyh1 (shTtyh1)"
NCBI gene IDs:
"Ttyh1: 57776"
Figure legend: "Ttyh1-expressing cells in E15.5 embryonic brains that were intraventricularly electroporated at E13.5 were immunostained using an anti-GFP primary (reporter gene) and Alexa Fluor 488-conjugated secondary antibodies. GFP immunofluorescence (green) was merged with DAPI-counterstained images (blue). VZ, ventricular zone; SVZ, subventricular zone; IZ, intermediate zone; CP, cortical plate. Scale bar: 100 μm. Quantification of (E)"
NCBI gene IDs:
"GFP: 
Ttyh1: 57776"
Figure legend: "Double-immunolabeling of E15.5 brain sections electroporated in utero with Ttyh1-expressing plasmid at E13.5 using anti-GFP (green) and Sox2 (red) antibodies, and Alexa Fluor 488- and 555-conjugated secondary antibodies. Scale bar: 50 μm."
NCBI gene IDs:
"Ttyh1: 57776"
Figure legend: "Double-immunolabeling of E15.5 brain sections electroporated in utero with Ttyh1-expressing plasmid at E13.5 using anti-GFP (green) and Sox2 (red) antibodies, and Alexa Fluor 488- and 555-conjugated secondary antibodies. Scale bar: 50 μm. Quantification of (G) (n = 3)."
NCBI gene IDs:
"Ttyh1: 57776"