DevLan/vispubs huggingface dataset:
Flow Mapping and Multivariate Visualization of Large Spatial Interaction Data
Authors: Diansheng Guo
Published at InfoVis, 2009

Spatial interactions (or flows), such as population migration and disease spread, naturally form a weighted location-to-location network (graph). Such geographically embedded networks (graphs) are usually very large. For example, the county-to-county migration data in the U.S. has thousands of counties and about a million migration paths. Moreover, many variables are associated with each flow, such as the number of migrants for different age groups, income levels, and occupations. It is a challenging task to visualize such data and discover network structures, multivariate relations, and their geographic patterns simultaneously. This paper addresses these challenges by developing an integrated interactive visualization framework that consists three coupled components: (1) a spatially constrained graph partitioning method that can construct a hierarchy of geographical regions (communities), where there are more flows or connections within regions than across regions; (2) a multivariate clustering and visualization method to detect and present multivariate patterns in the aggregated region-to-region flows; and (3) a highly interactive flow mapping component to map both flow and multivariate patterns in the geographic space, at different hierarchical levels. The proposed approach can process relatively large data sets and effectively discover and visualize major flow structures and multivariate relations at the same time. User interactions are supported to facilitate the understanding of both an overview and detailed patterns.
FromDaDy: Spreading Aircraft Trajectories Across Views to Support Iterative Queries
Authors: Christophe Hurter, Benjamin Tissoires, Stéphane Conversy
Published at InfoVis, 2009

When displaying thousands of aircraft trajectories on a screen, the visualization is spoiled by a tangle of trails. The visual analysis is therefore difficult, especially if a specific class of trajectories in an erroneous dataset has to be studied. We designed FromDaDy, a trajectory visualization tool that tackles the difficulties of exploring the visualization of multiple trails. This multidimensional data exploration is based on scatterplots, brushing, pick and drop, juxtaposed views and rapid visual design. Users can organize the workspace composed of multiple juxtaposed views. They can define the visual configuration of the views by connecting data dimensions from the dataset to Bertin's visual variables. They can then brush trajectories, and with a pick and drop operation they can spread the brushed information across views. They can then repeat these interactions, until they extract a set of relevant data, thus formulating complex queries. Through two real-world scenarios, we show how FromDaDy supports iterative queries and the extraction of trajectories in a dataset that contains up to 5 million data.
GeneShelf: A Web-based Visual Interface for Large Gene Expression Time-Series Data Repositories
Authors: Bo Hyoung Kim, Bongshin Lee, Susan Knoblach, Eric P. Hoffman, Jinwook Seo
Published at InfoVis, 2009

A widespread use of high-throughput gene expression analysis techniques enabled the biomedical research community to share a huge body of gene expression datasets in many public databases on the web. However, current gene expression data repositories provide static representations of the data and support limited interactions. This hinders biologists from effectively exploring shared gene expression datasets. Responding to the growing need for better interfaces to improve the utility of the public datasets, we have designed and developed a new web-based visual interface entitled GeneShelf (http://bioinformatics.cnmcresearch.org/GeneShelf). It builds upon a zoomable grid display to represent two categorical dimensions. It also incorporates an augmented timeline with expandable time points that better shows multiple data values for the focused time point by embedding bar charts. We applied GeneShelf to one of the largest microarray datasets generated to study the progression and recovery process of injuries at the spinal cord of mice and rats. We present a case study and a preliminary qualitative user study with biologists to show the utility and usability of GeneShelf.
Harnessing the Information Ecosystem with Wiki-based Visualization Dashboards
Authors: Matt McKeon
Published at InfoVis, 2009

We describe the design and deployment of Dashiki, a public Website where users may collaboratively build visualization dashboards through a combination of a wiki-like syntax and interactive editors. Our goals are to extend existing research on social data analysis into presentation and organization of data from multiple sources, explore new metaphors for these activities, and participate more fully in the Web's information ecology by providing tighter integration with real-time data. To support these goals, our design includes novel and low-barrier mechanisms for editing and layout of dashboard pages and visualizations, connection to data sources, and coordinating interaction between visualizations. In addition to describing these technologies, we provide a preliminary report on the public launch of a prototype based on this design, including a description of the activities of our users derived from observation and interviews.
Interaction Techniques for Selecting and Manipulating Subgraphs in Network Visualizations
Authors: Michael J. McGuffin, Igor Jurisica
Published at InfoVis, 2009

We present a novel and extensible set of interaction techniques for manipulating visualizations of networks by selecting subgraphs and then applying various commands to modify their layout or graphical properties. Our techniques integrate traditional rectangle and lasso selection, and also support selecting a node's neighbourhood by dragging out its radius (in edges) using a novel kind of radial menu. Commands for translation, rotation, scaling, or modifying graphical properties (such as opacity) and layout patterns can be performed by using a hotbox (a transiently popped-up, semi-transparent set of widgets) that has been extended in novel ways to integrate specification of commands with 1D or 2D arguments. Our techniques require only one mouse button and one keyboard key, and are designed for fast, gestural, in-place interaction. We present the design and integration of these interaction techniques, and illustrate their use in interactive graph visualization. Our techniques are implemented in NAViGaTOR, a software package for visualizing and analyzing biological networks. An initial usability study is also reported.
Interactive Dimensionality Reduction Through User-defined Combinations of Quality Metrics
Authors: Sara Johansson 0001, Jimmy Johansson 0001
Published at InfoVis, 2009

Multivariate data sets including hundreds of variables are increasingly common in many application areas. Most multivariate visualization techniques are unable to display such data effectively, and a common approach is to employ dimensionality reduction prior to visualization. Most existing dimensionality reduction systems focus on preserving one or a few significant structures in data. For many analysis tasks, however, several types of structures can be of high significance and the importance of a certain structure compared to the importance of another is often task-dependent. This paper introduces a system for dimensionality reduction by combining user-defined quality metrics using weight functions to preserve as many important structures as possible. The system aims at effective visualization and exploration of structures within large multivariate data sets and provides enhancement of diverse structures by supplying a range of automatic variable orderings. Furthermore it enables a quality-guided reduction of variables through an interactive display facilitating investigation of trade-offs between loss of structure and the number of variables to keep. The generality and interactivity of the system is demonstrated through a case scenario.
Lark: Coordinating Co-located Collaboration with Information Visualization
Authors: Matthew Tobiasz, Petra Isenberg, Sheelagh Carpendale
Published at InfoVis, 2009

Large multi-touch displays are expanding the possibilities of multiple-coordinated views by allowing multiple people to interact with data in concert or independently. We present Lark, a system that facilitates the coordination of interactions with information visualizations on shared digital workspaces. We focus on supporting this coordination according to four main criteria: scoped interaction, temporal flexibility, spatial flexibility, and changing collaboration styles. These are achieved by integrating a representation of the information visualization pipeline into the shared workspace, thus explicitly indicating coordination points on data, representation, presentation, and view levels. This integrated meta-visualization supports both the awareness of how views are linked and the freedom to work in concert or independently. Lark incorporates these four main criteria into a coherent visualization collaboration interaction environment by providing direct visual and algorithmic support for the coordination of data analysis actions over shared large displays.
Mapping Text with Phrase Nets
Authors: Frank van Ham, Martin Wattenberg, Fernanda B. Viégas
Published at InfoVis, 2009

We present a new technique, the phrase net, for generating visual overviews of unstructured text. A phrase net displays a graph whose nodes are words and whose edges indicate that two words are linked by a user-specified relation. These relations may be defined either at the syntactic or lexical level; different relations often produce very different perspectives on the same text. Taken together, these perspectives often provide an illuminating visual overview of the key concepts and relations in a document or set of documents.
MizBee: A Multiscale Synteny Browser
Authors: Miriah D. Meyer, Tamara Munzner, Hanspeter Pfister
Published at InfoVis, 2009

In the field of comparative genomics, scientists seek to answer questions about evolution and genomic function by comparing the genomes of species to find regions of shared sequences. Conserve dsyntenic blocks are an important biological data abstraction for indicating regions of shared sequences. The goal of this work is to show multiple types of relationships at multiple scales in a way that is visually comprehensible in accordance with known perceptual principles. We present a task analysis for this domain where the fundamental questions asked by biologists can be understood by a characterization of relationships into the four types of proximity/location, size, orientation, and similarity/strength, and the four scales of genome, chromosome, block, and genomic feature. We also propose a new taxonomy of the design space for visually encoding conservation data. We present MizBee, a multiscale synteny browser with the unique property of providing interactive side-by-side views of the data across the range of scales supporting exploration of all of these relationship types. We conclude with case studies from two biologists who used MizBee to augment their previous automatic analysis work flow, providing anecdotal evidence about the efficacy of the system for the visualization of syntenic data, the analysis of conservation relationships, and the communication of scientific insights.
Participatory Visualization with Wordle
Authors: Fernanda B. Viégas, Martin Wattenberg, Jonathan Feinberg
Published at InfoVis, 2009

We discuss the design and usage of ldquoWordle,rdquo a Web-based tool for visualizing text. Wordle creates tag-cloud-like displays that give careful attention to typography, color, and composition. We describe the algorithms used to balance various aesthetic criteria and create the distinctive Wordle layouts. We then present the results of a study of Wordle usage, based both on spontaneous behaviour observed in the wild, and on a large-scale survey of Wordle users. The results suggest that Wordles have become a kind of medium of expression, and that a ldquoparticipatory culturerdquo has arisen around them.
Protovis: A Graphical Toolkit for Visualization
Authors: Michael Bostock, Jeffrey Heer
Published at InfoVis, 2009

Despite myriad tools for visualizing data, there remains a gap between the notational efficiency of high-level visualization systems and the expressiveness and accessibility of low-level graphical systems. Powerful visualization systems may be inflexible or impose abstractions foreign to visual thinking, while graphical systems such as rendering APIs and vector-based drawing programs are tedious for complex work. We argue that an easy-to-use graphical system tailored for visualization is needed. In response, we contribute Protovis, an extensible toolkit for constructing visualizations by composing simple graphical primitives. In Protovis, designers specify visualizations as a hierarchy of marks with visual properties defined as functions of data. This representation achieves a level of expressiveness comparable to low-level graphics systems, while improving efficiency - the effort required to specify a visualization - and accessibility - the effort required to learn and modify the representation. We substantiate this claim through a diverse collection of examples and comparative analysis with popular visualization tools.
ResultMaps: Visualization for Search Interfaces
Authors: Edward Clarkson, Krishna Desai, James D. Foley
Published at InfoVis, 2009

Hierarchical representations are common in digital repositories, yet are not always fully leveraged in their online search interfaces. This work describes ResultMaps, which use hierarchical treemap representations with query string-driven digital library search engines. We describe two lab experiments, which find that ResultsMap users yield significantly better results over a control condition on some subjective measures, and we find evidence that ResultMaps have ancillary benefits via increased understanding of some aspects of repository content. The ResultMap system and experiments contribute an understanding of the benefits-direct and indirect-of the ResultMap approach to repository search visualization.
Scattering Points in Parallel Coordinates
Authors: Xiaoru Yuan, Peihong Guo, He Xiao, Hong Zhou 0004, Huamin Qu
Published at InfoVis, 2009

In this paper, we present a novel parallel coordinates design integrated with points (scattering points in parallel coordinates, SPPC), by taking advantage of both parallel coordinates and scatterplots. Different from most multiple views visualization frameworks involving parallel coordinates where each visualization type occupies an individual window, we convert two selected neighboring coordinate axes into a scatterplot directly. Multidimensional scaling is adopted to allow converting multiple axes into a single subplot. The transition between two visual types is designed in a seamless way. In our work, a series of interaction tools has been developed. Uniform brushing functionality is implemented to allow the user to perform data selection on both points and parallel coordinate polylines without explicitly switching tools. A GPU accelerated dimensional incremental multidimensional scaling (DIMDS) has been developed to significantly improve the system performance. Our case study shows that our scheme is more efficient than traditional multi-view methods in performing visual analysis tasks.
SellTrend: Inter-Attribute Visual Analysis of Temporal Transaction Data
Authors: Zhicheng Liu, John T. Stasko, Timothy Sullivan
Published at InfoVis, 2009

We present a case study of our experience designing SellTrend, a visualization system for analyzing airline travel purchase requests. The relevant transaction data can be characterized as multi-variate temporal and categorical event sequences, and the chief problem addressed is how to help company analysts identify complex combinations of transaction attributes that contribute to failed purchase requests. SellTrend combines a diverse set of techniques ranging from time series visualization to faceted browsing and historical trend analysis in order to help analysts make sense of the data. We believe that the combination of views and interaction capabilities in SellTrend provides an innovative approach to this problem and to other similar types of multivariate, temporally driven transaction data analysis. Initial feedback from company analysts confirms the utility and benefits of the system.
Smooth Graphs for Visual Exploration of Higher-Order State Transitions
Authors: Jorik Blaas, Charl P. Botha, Edward Grundy, Mark W. Jones, Robert S. Laramee, Frits H. Post
Published at InfoVis, 2009

In this paper, we present a new visual way of exploring state sequences in large observational time-series. A key advantage of our method is that it can directly visualize higher-order state transitions. A standard first order state transition is a sequence of two states that are linked by a transition. A higher-order state transition is a sequence of three or more states where the sequence of participating states are linked together by consecutive first order state transitions. Our method extends the current state-graph exploration methods by employing a two dimensional graph, in which higher-order state transitions are visualized as curved lines. All transitions are bundled into thick splines, so that the thickness of an edge represents the frequency of instances. The bundling between two states takes into account the state transitions before and after the transition. This is done in such a way that it forms a continuous representation in which any subsequence of the timeseries is represented by a continuous smooth line. The edge bundles in these graphs can be explored interactively through our incremental selection algorithm. We demonstrate our method with an application in exploring labeled time-series data from a biological survey, where a clustering has assigned a single label to the data at each time-point. In these sequences, a large number of cyclic patterns occur, which in turn are linked to specific activities. We demonstrate how our method helps to find these cycles, and how the interactive selection process helps to find and investigate activities.
Spatiotemporal Analysis of Sensor Logs using Growth Ring Maps
Authors: Peter Bak, Florian Mansmann, Halldór Janetzko, Daniel A. Keim
Published at InfoVis, 2009

Spatiotemporal analysis of sensor logs is a challenging research field due to three facts: a) traditional two-dimensional maps do not support multiple events to occur at the same spatial location, b) three-dimensional solutions introduce ambiguity and are hard to navigate, and c) map distortions to solve the overlap problem are unfamiliar to most users. This paper introduces a novel approach to represent spatial data changing over time by plotting a number of non-overlapping pixels, close to the sensor positions in a map. Thereby, we encode the amount of time that a subject spent at a particular sensor to the number of plotted pixels. Color is used in a twofold manner; while distinct colors distinguish between sensor nodes in different regions, the colors' intensity is used as an indicator to the temporal property of the subjects' activity. The resulting visualization technique, called growth ring maps, enables users to find similarities and extract patterns of interest in spatiotemporal data by using humans' perceptual abilities. We demonstrate the newly introduced technique on a dataset that shows the behavior of healthy and Alzheimer transgenic, male and female mice. We motivate the new technique by showing that the temporal analysis based on hierarchical clustering and the spatial analysis based on transition matrices only reveal limited results. Results and findings are cross-validated using multidimensional scaling. While the focus of this paper is to apply our visualization for monitoring animal behavior, the technique is also applicable for analyzing data, such as packet tracing, geographic monitoring of sales development, or mobile phone capacity planning.
SpicyNodes: Radial Layout Authoring for the General Public
Authors: Michael Douma, Grzegorz Ligierko, Ovidiu Ancuta, Pavel Gritsai, Sean Liu
Published at InfoVis, 2009

Trees and graphs are relevant to many online tasks such as visualizing social networks, product catalogs, educational portals, digital libraries, the semantic web, concept maps and personalized information management. SpicyNodes is an information-visualization technology that builds upon existing research on radial tree layouts and graph structures. Users can browse a tree, clicking from node to node, as well as successively viewing a node, immediately related nodes and the path back to the ldquohomerdquo nodes. SpicyNodes' layout algorithms maintain balanced layouts using a hybrid mixture of a geometric layout (a succession of spanning radial trees) and force-directed layouts to minimize overlapping nodes, plus several other improvements over prior art. It provides XML-based API and GUI authoring tools. The goal of the SpicyNodes project is to implement familiar principles of radial maps and focus+context with an attractive and inviting look and feel in an open system that is accessible to virtually any Internet user.
Temporal Summaries: Supporting Temporal Categorical Searching, Aggregation and Comparison
Authors: Taowei David Wang, Catherine Plaisant, Ben Shneiderman, Neil Spring, David Roseman, Greg Marchand, Vikramjit Mukherjee, Mark S. Smith
Published at InfoVis, 2009

When analyzing thousands of event histories, analysts often want to see the events as an aggregate to detect insights and generate new hypotheses about the data. An analysis tool must emphasize both the prevalence and the temporal ordering of these events. Additionally, the analysis tool must also support flexible comparisons to allow analysts to gather visual evidence. In a previous work, we introduced align, rank, and filter (ARF) to accentuate temporal ordering. In this paper, we present temporal summaries, an interactive visualization technique that highlights the prevalence of event occurrences. Temporal summaries dynamically aggregate events in multiple granularities (year, month, week, day, hour, etc.) for the purpose of spotting trends over time and comparing several groups of records. They provide affordances for analysts to perform temporal range filters. We demonstrate the applicability of this approach in two extensive case studies with analysts who applied temporal summaries to search, filter, and look for patterns in electronic health records and academic records.