DevLan/vispubs huggingface dataset:
Visual Steering and Verification of Mass Spectrometry Data Factorization in Air Quality Research
Authors: Daniel Engel, Klaus Greff, Christoph Garth, Keith Bein, Anthony S. Wexler, Bernd Hamann, Hans Hagen
Published at SciVis, 2012

The study of aerosol composition for air quality research involves the analysis of high-dimensional single particle mass spectrometry data. We describe, apply, and evaluate a novel interactive visual framework for dimensionality reduction of such data. Our framework is based on non-negative matrix factorization with specifically defined regularization terms that aid in resolving mass spectrum ambiguity. Thereby, visualization assumes a key role in providing insight into and allowing to actively control a heretofore elusive data processing step, and thus enabling rapid analysis meaningful to domain scientists. In extending existing black box schemes, we explore design choices for visualizing, interacting with, and steering the factorization process to produce physically meaningful results. A domain-expert evaluation of our system performed by the air quality research experts involved in this effort has shown that our method and prototype admits the finding of unambiguous and physically correct lower-dimensional basis transformations of mass spectrometry data at significantly increased speed and a higher degree of ease.
Visualization of Astronomical Nebulae via Distributed Multi-GPU Compressed Sensing Tomography
Authors: Stephan Wenger, Marco Ament, Stefan Guthe, Dirk A. Lorenz, Andreas M. Tillmann, Daniel Weiskopf, Marcus A. Magnor
Published at SciVis, 2012

The 3D visualization of astronomical nebulae is a challenging problem since only a single 2D projection is observable from our fixed vantage point on Earth. We attempt to generate plausible and realistic looking volumetric visualizations via a tomographic approach that exploits the spherical or axial symmetry prevalent in some relevant types of nebulae. Different types of symmetry can be implemented by using different randomized distributions of virtual cameras. Our approach is based on an iterative compressed sensing reconstruction algorithm that we extend with support for position-dependent volumetric regularization and linear equality constraints. We present a distributed multi-GPU implementation that is capable of reconstructing high-resolution datasets from arbitrary projections. Its robustness and scalability are demonstrated for astronomical imagery from the Hubble Space Telescope. The resulting volumetric data is visualized using direct volume rendering. Compared to previous approaches, our method preserves a much higher amount of detail and visual variety in the 3D visualization, especially for objects with only approximate symmetry.
Visualization of Electrostatic Dipoles in Molecular Dynamics of Metal Oxides
Authors: Sebastian Grottel, Philipp Beck, Christoph Müller 0001, Guido Reina, Johannes Roth, Hans-Rainer Trebin, Thomas Ertl
Published at SciVis, 2012

Metal oxides are important for many technical applications. For example alumina (aluminum oxide) is the most commonly-used ceramic in microelectronic devices thanks to its excellent properties. Experimental studies of these materials are increasingly supplemented with computer simulations. Molecular dynamics (MD) simulations can reproduce the material behavior very well and are now reaching time scales relevant for interesting processes like crack propagation. In this work we focus on the visualization of induced electric dipole moments on oxygen atoms in crack propagation simulations. The straightforward visualization using glyphs for the individual atoms, simple shapes like spheres or arrows, is insufficient for providing information about the data set as a whole. As our contribution we show for the first time that fractional anisotropy values computed from the local neighborhood of individual atoms of MD simulation data depict important information about relevant properties of the field of induced electric dipole moments. Iso surfaces in the field of fractional anisotropy as well as adjustments of the glyph representation allow the user to identify regions of correlated orientation. We present novel and relevant findings for the application domain resulting from these visualizations, like the influence of mechanical forces on the electrostatic properties.
Visualization of Flow Behavior in Earth Mantle Convection
Authors: Simon Schröder, John A. Peterson, Harald Obermaier, Louise H. Kellogg, Kenneth I. Joy, Hans Hagen
Published at SciVis, 2012

A fundamental characteristic of fluid flow is that it causes mixing: introduce a dye into a flow, and it will disperse. Mixing can be used as a method to visualize and characterize flow. Because mixing is a process that occurs over time, it is a 4D problem that presents a challenge for computation, visualization, and analysis. Motivated by a mixing problem in geophysics, we introduce a combination of methods to analyze, transform, and finally visualize mixing in simulations of convection in a self-gravitating 3D spherical shell representing convection in the Earth's mantle. Geophysicists use tools such as the finite element model CitcomS to simulate convection, and introduce massless, passive tracers to model mixing. The output of geophysical flow simulation is hard to analyze for domain experts because of overall data size and complexity. In addition, information overload and occlusion are problems when visualizing a whole-earth model. To address the large size of the data, we rearrange the simulation data using intelligent indexing for fast file access and efficient caching. To address information overload and interpret mixing, we compute tracer concentration statistics, which are used to characterize mixing in mantle convection models. Our visualization uses a specially tailored version of Direct Volume Rendering. The most important adjustment is the use of constant opacity. Because of this special area of application, i. e. the rendering of a spherical shell, many computations for volume rendering can be optimized. These optimizations are essential to a smooth animation of the time-dependent simulation data. Our results show how our system can be used to quickly assess the simulation output and test hypotheses regarding Earth's mantle convection. The integrated processing pipeline helps geoscientists to focus on their main task of analyzing mantle homogenization.
Visualization of Temporal Similarity in field Data
Authors: Steffen Frey, Filip Sadlo, Thomas Ertl
Published at SciVis, 2012

This paper presents a visualization approach for detecting and exploring similarity in the temporal variation of field data. We provide an interactive technique for extracting correlations from similarity matrices which capture temporal similarity of univariate functions. We make use of the concept to extract periodic and quasiperiodic behavior at single (spatial) points as well as similarity between different locations within a field and also between different data sets. The obtained correlations are utilized for visual exploration of both temporal and spatial relationships in terms of temporal similarity. Our entire pipeline offers visual interaction and inspection, allowing for the flexibility that in particular time-dependent data analysis techniques require. We demonstrate the utility and versatility of our approach by applying our implementation to data from both simulation and measurement.
Visualizing Nuclear Scission through a Multifield Extension of Topological Analysis
Authors: David J. Duke, Hamish A. Carr, Aaron Knoll, Nicolas Schunck, Hai Ah Nam, Andrzej Staszczak
Published at SciVis, 2012

In nuclear science, density functional theory (DFT) is a powerful tool to model the complex interactions within the atomic nucleus, and is the primary theoretical approach used by physicists seeking a better understanding of fission. However DFT simulations result in complex multivariate datasets in which it is difficult to locate the crucial `scission' point at which one nucleus fragments into two, and to identify the precursors to scission. The Joint Contour Net (JCN) has recently been proposed as a new data structure for the topological analysis of multivariate scalar fields, analogous to the contour tree for univariate fields. This paper reports the analysis of DFT simulations using the JCN, the first application of the JCN technique to real data. It makes three contributions to visualization: (i) a set of practical methods for visualizing the JCN, (ii) new insight into the detection of nuclear scission, and (iii) an analysis of aesthetic criteria to drive further work on representing the JCN.
WYSIWYP: What You See Is What You Pick
Authors: Alexander Wiebel, Frans Vos, David Foerster, Hans-Christian Hege
Published at SciVis, 2012

Scientists, engineers and physicians are used to analyze 3D data with slice-based visualizations. Radiologists for example are trained to read slices of medical imaging data. Despite the numerous examples of sophisticated 3D rendering techniques, domain experts, who still prefer slice-based visualization do not consider these to be very useful. Since 3D renderings have the advantage of providing an overview at a glance, while 2D depictions better serve detailed analyses, it is of general interest to better combine these methods. Recently there have been attempts to bridge this gap between 2D and 3D renderings. These attempts include specialized techniques for volume picking in medical imaging data that result in repositioning slices. In this paper, we present a new volume picking technique called WYSIWYP (“what you see is what you pick”) that, in contrast to previous work, does not require pre-segmented data or metadata and thus is more generally applicable. The positions picked by our method are solely based on the data itself, the transfer function, and the way the volumetric rendering is perceived by the user. To demonstrate the utility of the proposed method, we apply it to automated positioning of slices in volumetric scalar fields from various application areas. Finally, we present results of a user study in which 3D locations selected by users are compared to those resulting from WYSIWYP. The user study confirms our claim that the resulting positions correlate well with those perceived by the user.
A User Study on Curved Edges in Graph Visualization
Authors: Kai Xu 0003, Chris Rooney, Peter J. Passmore, Dong-Han Ham, Phong Hai Nguyen
Published at InfoVis, 2012

Recently there has been increasing research interest in displaying graphs with curved edges to produce more readable visualizations. While there are several automatic techniques, little has been done to evaluate their effectiveness empirically. In this paper we present two experiments studying the impact of edge curvature on graph readability. The goal is to understand the advantages and disadvantages of using curved edges for common graph tasks compared to straight line segments, which are the conventional choice for showing edges in node-link diagrams. We included several edge variations: straight edges, edges with different curvature levels, and mixed straight and curved edges. During the experiments, participants were asked to complete network tasks including determination of connectivity, shortest path, node degree, and common neighbors. We also asked the participants to provide subjective ratings of the aesthetics of different edge types. The results show significant performance differences between the straight and curved edges and clear distinctions between variations of curved edges.
Adaptive Composite Map Projections
Authors: Bernhard Jenny
Published at InfoVis, 2012

All major web mapping services use the web Mercator projection. This is a poor choice for maps of the entire globe or areas of the size of continents or larger countries because the Mercator projection shows medium and higher latitudes with extreme areal distortion and provides an erroneous impression of distances and relative areas. The web Mercator projection is also not able to show the entire globe, as polar latitudes cannot be mapped. When selecting an alternative projection for information visualization, rivaling factors have to be taken into account, such as map scale, the geographic area shown, the map's height-to-width ratio, and the type of cartographic visualization. It is impossible for a single map projection to meet the requirements for all these factors. The proposed composite map projection combines several projections that are recommended in cartographic literature and seamlessly morphs map space as the user changes map scale or the geographic region displayed. The composite projection adapts the map's geometry to scale, to the map's height-to-width ratio, and to the central latitude of the displayed area by replacing projections and adjusting their parameters. The composite projection shows the entire globe including poles; it portrays continents or larger countries with less distortion (optionally without areal distortion); and it can morph to the web Mercator projection for maps showing small regions.
Algorithms for Labeling Focus Regions
Authors: Martin Fink 0001, Jan-Henrik Haunert, André Schulz 0001, Joachim Spoerhase, Alexander Wolff 0001
Published at InfoVis, 2012

In this paper, we investigate the problem of labeling point sites in focus regions of maps or diagrams. This problem occurs, for example, when the user of a mapping service wants to see the names of restaurants or other POIs in a crowded downtown area but keep the overview over a larger area. Our approach is to place the labels at the boundary of the focus region and connect each site with its label by a linear connection, which is called a leader. In this way, we move labels from the focus region to the less valuable context region surrounding it. In order to make the leader layout well readable, we present algorithms that rule out crossings between leaders and optimize other characteristics such as total leader length and distance between labels. This yields a new variant of the boundary labeling problem, which has been studied in the literature. Other than in traditional boundary labeling, where leaders are usually schematized polylines, we focus on leaders that are either straight-line segments or Bezier curves. Further, we present algorithms that, given the sites, find a position of the focus region that optimizes the above characteristics. We also consider a variant of the problem where we have more sites than space for labels. In this situation, we assume that the sites are prioritized by the user. Alternatively, we take a new facility-location perspective which yields a clustering of the sites. We label one representative of each cluster. If the user wishes, we apply our approach to the sites within a cluster, giving details on demand.
An Empirical Model of Slope Ratio Comparisons
Authors: Justin Talbot, John Gerth, Pat Hanrahan
Published at InfoVis, 2012

Comparing slopes is a fundamental graph reading task and the aspect ratio chosen for a plot influences how easy these comparisons are to make. According to Banking to 45°, a classic design guideline first proposed and studied by Cleveland et al., aspect ratios that center slopes around 45° minimize errors in visual judgments of slope ratios. This paper revisits this earlier work. Through exploratory pilot studies that expand Cleveland et al.'s experimental design, we develop an empirical model of slope ratio estimation that fits more extreme slope ratio judgments and two common slope ratio estimation strategies. We then run two experiments to validate our model. In the first, we show that our model fits more generally than the one proposed by Cleveland et al. and we find that, in general, slope ratio errors are not minimized around 45°. In the second experiment, we explore a novel hypothesis raised by our model: that visible baselines can substantially mitigate errors made in slope judgments. We conclude with an application of our model to aspect ratio selection.
An Empirical Study on Using Visual Embellishments in Visualization
Authors: Rita Borgo, Alfie Abdul-Rahman, Farhan Mohamed, Phil W. Grant, Irene Reppa, Luciano Floridi, Min Chen 0001
Published at InfoVis, 2012

In written and spoken communications, figures of speech (e.g., metaphors and synecdoche) are often used as an aid to help convey abstract or less tangible concepts. However, the benefits of using rhetorical illustrations or embellishments in visualization have so far been inconclusive. In this work, we report an empirical study to evaluate hypotheses that visual embellishments may aid memorization, visual search and concept comprehension. One major departure from related experiments in the literature is that we make use of a dual-task methodology in our experiment. This design offers an abstraction of typical situations where viewers do not have their full attention focused on visualization (e.g., in meetings and lectures). The secondary task introduces “divided attention”, and makes the effects of visual embellishments more observable. In addition, it also serves as additional masking in memory-based trials. The results of this study show that visual embellishments can help participants better remember the information depicted in visualization. On the other hand, visual embellishments can have a negative impact on the speed of visual search. The results show a complex pattern as to the benefits of visual embellishments in helping participants grasp key concepts from visualization.
Assessing the Effect of Visualizations on Bayesian Reasoning through Crowdsourcing
Authors: Luana Micallef, Pierre Dragicevic, Jean-Daniel Fekete
Published at InfoVis, 2012

People have difficulty understanding statistical information and are unaware of their wrong judgments, particularly in Bayesian reasoning. Psychology studies suggest that the way Bayesian problems are represented can impact comprehension, but few visual designs have been evaluated and only populations with a specific background have been involved. In this study, a textual and six visual representations for three classic problems were compared using a diverse subject pool through crowdsourcing. Visualizations included area-proportional Euler diagrams, glyph representations, and hybrid diagrams combining both. Our study failed to replicate previous findings in that subjects' accuracy was remarkably lower and visualizations exhibited no measurable benefit. A second experiment confirmed that simply adding a visualization to a textual Bayesian problem is of little help, even when the text refers to the visualization, but suggests that visualizations are more effective when the text is given without numerical values. We discuss our findings and the need for more such experiments to be carried out on heterogeneous populations of non-experts.
Beyond Mouse and Keyboard: Expanding Design Considerations for Information Visualization Interactions
Authors: Bongshin Lee, Petra Isenberg, Nathalie Henry Riche, Sheelagh Carpendale
Published at InfoVis, 2012

The importance of interaction to Information Visualization (InfoVis) and, in particular, of the interplay between interactivity and cognition is widely recognized [12, 15, 32, 55, 70]. This interplay, combined with the demands from increasingly large and complex datasets, is driving the increased significance of interaction in InfoVis. In parallel, there have been rapid advances in many facets of interaction technologies. However, InfoVis interactions have yet to take full advantage of these new possibilities in interaction technologies, as they largely still employ the traditional desktop, mouse, and keyboard setup of WIMP (Windows, Icons, Menus, and a Pointer) interfaces. In this paper, we reflect more broadly about the role of more “natural” interactions for InfoVis and provide opportunities for future research. We discuss and relate general HCI interaction models to existing InfoVis interaction classifications by looking at interactions from a novel angle, taking into account the entire spectrum of interactions. Our discussion of InfoVis-specific interaction design considerations helps us identify a series of underexplored attributes of interaction that can lead to new, more “natural,” interaction techniques for InfoVis.
Capturing the Design Space of Sequential Space-filling Layouts
Authors: Thomas Baudel, Bertjan Broeksema
Published at InfoVis, 2012

We characterize the design space of the algorithms that sequentially tile a rectangular area with smaller, fixed-surface, rectangles. This space consist of five independent dimensions: Order, Size, Score, Recurse and Phrase. Each of these dimensions describe a particular aspect of such layout tasks. This class of layouts is interesting, because, beyond encompassing simple grids, tables and trees, it also includes all kinds of treemaps involving the placement of rectangles. For instance, Slice and dice, Squarified, Strip and Pivot layouts are various points in this five dimensional space. Many classic statistics visualizations, such as 100% stacked bar charts, mosaic plots and dimensional stacking, are also instances of this class. A few new and potentially interesting points in this space are introduced, such as spiral treemaps and variations on the strip layout. The core algorithm is implemented as a JavaScript prototype that can be used as a layout component in a variety of InfoViz toolkits.
Comparing Clusterings Using Bertin's Idea
Authors: Alexander Pilhofer, Alexander Gribov, Antony Unwin
Published at InfoVis, 2012

Classifying a set of objects into clusters can be done in numerous ways, producing different results. They can be visually compared using contingency tables [27], mosaicplots [13], fluctuation diagrams [15], tableplots [20] , (modified) parallel coordinates plots [28], Parallel Sets plots [18] or circos diagrams [19]. Unfortunately the interpretability of all these graphical displays decreases rapidly with the numbers of categories and clusterings. In his famous book A Semiology of Graphics [5] Bertin writes “the discovery of an ordered concept appears as the ultimate point in logical simplification since it permits reducing to a single instant the assimilation of series which previously required many instants of study”. Or in more everyday language, if you use good orderings you can see results immediately that with other orderings might take a lot of effort. This is also related to the idea of effect ordering [12], that data should be organised to reflect the effect you want to observe. This paper presents an efficient algorithm based on Bertin's idea and concepts related to Kendall's t [17], which finds informative joint orders for two or more nominal classification variables. We also show how these orderings improve the various displays and how groups of corresponding categories can be detected using a top-down partitioning algorithm. Different clusterings based on data on the environmental performance of cars sold in Germany are used for illustration. All presented methods are available in the R package extracat which is used to compute the optimized orderings for the example dataset.