DevLan/vispubs huggingface dataset:
Extending the Nested Model for User-Centric XAI: A Design Study on GNN-based Drug Repurposing
Authors: Qianwen Wang, Kexin Huang, Payal Chandak, Marinka Zitnik, Nils Gehlenborg
Published at Vis, 2022

Whether AI explanations can help users achieve specific tasks efficiently (i.e., usable explanations) is significantly influenced by their visual presentation. While many techniques exist to generate explanations, it remains unclear how to select and visually present AI explanations based on the characteristics of domain users. This paper aims to understand this question through a multidisciplinary design study for a specific problem: explaining graph neural network (GNN) predictions to domain experts in drug repurposing, i.e., reuse of existing drugs for new diseases. Building on the nested design model of visualization, we incorporate XAI design considerations from a literature review and from our collaborators' feedback into the design process. Specifically, we discuss XAI-related design considerations for usable visual explanations at each design layer: target user, usage context, domain explanation, and XAI goal at the domain layer; format, granularity, and operation of explanations at the abstraction layer; encodings and interactions at the visualization layer; and XAI and rendering algorithm at the algorithm layer. We present how the extended nested model motivates and informs the design of DrugExplorer, an XAI tool for drug repurposing. Based on our domain characterization, DrugExplorer provides path-based explanations and presents them both as individual paths and meta-paths for two key XAI operations, why and what else. DrugExplorer offers a novel visualization design called MetaMatrix with a set of interactions to help domain users organize and compare explanation paths at different levels of granularity to generate domain-meaningful insights. We demonstrate the effectiveness of the selected visual presentation and DrugExplorer as a whole via a usage scenario, a user study, and expert interviews. From these evaluations, we derive insightful observations and reflections that can inform the design of XAI visualizations for other scientific applications.
Fiber Uncertainty Visualization for Bivariate Data With Parametric and Nonparametric Noise Models
Authors: Tushar M. Athawale, Christopher R. Johnson 0001, Sudhanshu Sane, David Pugmire
Published at Vis, 2022

Visualization and analysis of multivariate data and their uncertainty are top research challenges in data visualization. Constructing fiber surfaces is a popular technique for multivariate data visualization that generalizes the idea of level-set visualization for univariate data to multivariate data. In this paper, we present a statistical framework to quantify positional probabilities of fibers extracted from uncertain bivariate fields. Specifically, we extend the state-of-the-art Gaussian models of uncertainty for bivariate data to other parametric distributions (e.g., uniform and Epanechnikov) and more general nonparametric probability distributions (e.g., histograms and kernel density estimation) and derive corresponding spatial probabilities of fibers. In our proposed framework, we leverage Green's theorem for closed-form computation of fiber probabilities when bivariate data are assumed to have independent parametric and nonparametric noise. Additionally, we present a nonparametric approach combined with numerical integration to study the positional probability of fibers when bivariate data are assumed to have correlated noise. For uncertainty analysis, we visualize the derived probability volumes for fibers via volume rendering and extracting level sets based on probability thresholds. We present the utility of our proposed techniques via experiments on synthetic and simulation datasets.
FlowNL: Asking the Flow Data in Natural Languages
Authors: Jieying Huang, Yang Xi, Junnan Hu, Jun Tao 0002
Published at Vis, 2022

Flow visualization is essentially a tool to answer domain experts' questions about flow fields using rendered images. Static flow visualization approaches require domain experts to raise their questions to visualization experts, who develop specific techniques to extract and visualize the flow structures of interest. Interactive visualization approaches allow domain experts to ask the system directly through the visual analytic interface, which provides flexibility to support various tasks. However, in practice, the visual analytic interface may require extra learning effort, which often discourages domain experts and limits its usage in real-world scenarios. In this paper, we propose FlowNL, a novel interactive system with a natural language interface. FlowNL allows users to manipulate the flow visualization system using plain English, which greatly reduces the learning effort. We develop a natural language parser to interpret user intention and translate textual input into a declarative language. We design the declarative language as an intermediate layer between the natural language and the programming language specifically for flow visualization. The declarative language provides selection and composition rules to derive relatively complicated flow structures from primitive objects that encode various kinds of information about scalar fields, flow patterns, regions of interest, connectivities, etc. We demonstrate the effectiveness of FlowNL using multiple usage scenarios and an empirical evaluation.
FoVolNet: Fast Volume Rendering using Foveated Deep Neural Networks
Authors: David Bauer, Qi Wu 0015, Kwan-Liu Ma
Published at Vis, 2022

Volume data is found in many important scientific and engineering applications. Rendering this data for visualization at high quality and interactive rates for demanding applications such as virtual reality is still not easily achievable even using professional-grade hardware. We introduce FoVolNet—a method to significantly increase the performance of volume data visualization. We develop a cost-effective foveated rendering pipeline that sparsely samples a volume around a focal point and reconstructs the full-frame using a deep neural network. Foveated rendering is a technique that prioritizes rendering computations around the user's focal point. This approach leverages properties of the human visual system, thereby saving computational resources when rendering data in the periphery of the user's field of vision. Our reconstruction network combines direct and kernel prediction methods to produce fast, stable, and perceptually convincing output. With a slim design and the use of quantization, our method outperforms state-of-the-art neural reconstruction techniques in both end-to-end frame times and visual quality. We conduct extensive evaluations of the system's rendering performance, inference speed, and perceptual properties, and we provide comparisons to competing neural image reconstruction techniques. Our test results show that FoVolNet consistently achieves significant time saving over conventional rendering while preserving perceptual quality.
GenoREC: A Recommendation System for Interactive Genomics Data Visualization
Authors: Aditeya Pandey, Sehi L'Yi, Qianwen Wang, Michelle Borkin, Nils Gehlenborg
Published at Vis, 2022

Interpretation of genomics data is critically reliant on the application of a wide range of visualization tools. A large number of visualization techniques for genomics data and different analysis tasks pose a significant challenge for analysts: which visualization technique is most likely to help them generate insights into their data? Since genomics analysts typically have limited training in data visualization, their choices are often based on trial and error or guided by technical details, such as data formats that a specific tool can load. This approach prevents them from making effective visualization choices for the many combinations of data types and analysis questions they encounter in their work. Visualization recommendation systems assist non-experts in creating data visualization by recommending appropriate visualizations based on the data and task characteristics. However, existing visualization recommendation systems are not designed to handle domain-specific problems. To address these challenges, we designed GenoREC, a novel visualization recommendation system for genomics. GenoREC enables genomics analysts to select effective visualizations based on a description of their data and analysis tasks. Here, we present the recommendation model that uses a knowledge-based method for choosing appropriate visualizations and a web application that enables analysts to input their requirements, explore recommended visualizations, and export them for their usage. Furthermore, we present the results of two user studies demonstrating that GenoREC recommends visualizations that are both accepted by domain experts and suited to address the given genomics analysis problem. All supplemental materials are available at https://osf.io/y73pt/.
Geo-Storylines: Integrating Maps into Storyline Visualizations
Authors: Golina Hulstein, Vanessa Peña Araya, Anastasia Bezerianos
Published at Vis, 2022

Storyline visualizations are a powerful way to compactly visualize how the relationships between people evolve over time. Real-world relationships often also involve space, for example the cities that two political rivals visited together or alone over the years. By default, Storyline visualizations only show implicitly geospatial co-occurrence between people (drawn as lines), by bringing their lines together. Even the few designs that do explicitly show geographic locations only do so in abstract ways (e.g., annotations) and do not communicate geospatial information, such as the direction or extent of their political campains. We introduce Geo-Storylines, a collection of visualisation designs that integrate geospatial context into Storyline visualizations, using different strategies for compositing time and space. Our contribution is twofold. First, we present the results of a sketching workshop with 11 participants, that we used to derive a design space for integrating maps into Storylines. Second, by analyzing the strengths and weaknesses of the potential designs of the design space in terms of legibility and ability to scale to multiple relationships, we extract the three most promising: Time Glyphs, Coordinated Views, and Map Glyphs. We compare these three techniques first in a controlled study with 18 participants, under five different geospatial tasks and two maps of different complexity. We additionally collected informal feedback about their usefulness from domain experts in data journalism. Our results indicate that, as expected, detailed performance depends on the task. Nevertheless, Coordinated Views remain a highly effective and preferred technique across the board.
GRay: Ray Casting for Visualization and Interactive Data Exploration of Gaussian Mixture Models
Authors: Kai Lawonn, Monique Meuschke, Pepe Eulzer, Matthias Mitterreiter, Joachim Giesen, Tobias Günther
Published at Vis, 2022

The Gaussian mixture model (GMM) describes the distribution of random variables from several different populations. GMMs have widespread applications in probability theory, statistics, machine learning for unsupervised cluster analysis and topic modeling, as well as in deep learning pipelines. So far, few efforts have been made to explore the underlying point distribution in combination with the GMMs, in particular when the data becomes high-dimensional and when the GMMs are composed of many Gaussians. We present an analysis tool comprising various GPU-based visualization techniques to explore such complex GMMs. To facilitate the exploration of high-dimensional data, we provide a novel navigation system to analyze the underlying data. Instead of projecting the data to 2D, we utilize interactive 3D views to better support users in understanding the spatial arrangements of the Gaussian distributions. The interactive system is composed of two parts: (1) raycasting-based views that visualize cluster memberships, spatial arrangements, and support the discovery of new modes. (2) overview visualizations that enable the comparison of Gaussians with each other, as well as small multiples of different choices of basis vectors. Users are supported in their exploration with customization tools and smooth camera navigations. Our tool was developed and assessed by five domain experts, and its usefulness was evaluated with 23 participants. To demonstrate the effectiveness, we identify interesting features in several data sets.
HetVis: A Visual Analysis Approach for Identifying Data Heterogeneity in Horizontal Federated Learning
Authors: Xumeng Wang, Wei Chen 0001, Jiazhi Xia, Zhen Wen, Rongchen Zhu, Tobias Schreck
Published at Vis, 2022

Horizontal federated learning (HFL) enables distributed clients to train a shared model and keep their data privacy. In training high-quality HFL models, the data heterogeneity among clients is one of the major concerns. However, due to the security issue and the complexity of deep learning models, it is challenging to investigate data heterogeneity across different clients. To address this issue, based on a requirement analysis we developed a visual analytics tool, HetVis, for participating clients to explore data heterogeneity. We identify data heterogeneity through comparing prediction behaviors of the global federated model and the stand-alone model trained with local data. Then, a context-aware clustering of the inconsistent records is done, to provide a summary of data heterogeneity. Combining with the proposed comparison techniques, we develop a novel set of visualizations to identify heterogeneity issues in HFL. We designed three case studies to introduce how HetVis can assist client analysts in understanding different types of heterogeneity issues. Expert reviews and a comparative study demonstrate the effectiveness of HetVis.
HiTailor: Interactive Transformation and Visualization for Hierarchical Tabular Data
Authors: Guozheng Li 0002, Runfei Li, Zicheng Wang, Chi Harold Liu, Min Lu 0002, Guoren Wang
Published at Vis, 2022

Tabular visualization techniques integrate visual representations with tabular data to avoid additional cognitive load caused by splitting users' attention. However, most of the existing studies focus on simple flat tables instead of hierarchical tables, whose complex structure limits the expressiveness of visualization results and affects users' efficiency in visualization construction. We present HiTailor, a technique for presenting and exploring hierarchical tables. HiTailor constructs an abstract model, which defines row/column headings as biclustering and hierarchical structures. Based on our abstract model, we identify three pairs of operators, Swap/Transpose, ToStacked/ToLinear, Fold/Unfold, for transformations of hierarchical tables to support users' comprehensive explorations. After transformation, users can specify a cell or block of interest in hierarchical tables as a TableUnit for visualization, and HiTailor recommends other related TableUnits according to the abstract model using different mechanisms. We demonstrate the usability of the HiTailor system through a comparative study and a case study with domain experts, showing that HiTailor can present and explore hierarchical tables from different viewpoints. HiTailor is available at https://github.com/bitvis2021/HiTailor.
How Do Viewers Synthesize Conflicting Information from Data Visualizations?
Authors: Prateek Mantri, Hariharan Subramonyam, Audrey L. Michal, Cindy Xiong
Published at Vis, 2022

Scientific knowledge develops through cumulative discoveries that build on, contradict, contextualize, or correct prior findings. Scientists and journalists often communicate these incremental findings to lay people through visualizations and text (e.g., the positive and negative effects of caffeine intake). Consequently, readers need to integrate diverse and contrasting evidence from multiple sources to form opinions or make decisions. However, the underlying mechanism for synthesizing information from multiple visualizations remains under-explored. To address this knowledge gap, we conducted a series of four experiments ($\mathrm{N}=1166$) in which participants synthesized empirical evidence from a pair of line charts presented sequentially. In Experiment 1, we administered a baseline condition with charts depicting no specific context where participants held no strong belief. To test for the generalizability, we introduced real-world scenarios to our visualizations in Experiment 2 and added accompanying text descriptions similar to online news articles or blog posts in Experiment 3. In all three experiments, we varied the relative direction and magnitude of line slopes within the chart pairs. We found that participants tended to weigh the positive slope more when the two charts depicted relationships in the opposite direction (e.g., one positive slope and one negative slope). Participants tended to weigh the less steep slope more when the two charts depicted relationships in the same direction (e.g., both positive). Through these experiments, we characterize participants' synthesis behaviors depending on the relationship between the information they viewed, contribute to theories describing underlying cognitive mechanisms in information synthesis, and describe design implications for data storytelling.
IDLat: An Importance-Driven Latent Generation Method for Scientific Data
Authors: Jingyi Shen, Haoyu Li, Jiayi Xu 0001, Ayan Biswas, Han-Wei Shen
Published at Vis, 2022

Deep learning based latent representations have been widely used for numerous scientific visualization applications such as isosurface similarity analysis, volume rendering, flow field synthesis, and data reduction, just to name a few. However, existing latent representations are mostly generated from raw data in an unsupervised manner, which makes it difficult to incorporate domain interest to control the size of the latent representations and the quality of the reconstructed data. In this paper, we present a novel importance-driven latent representation to facilitate domain-interest-guided scientific data visualization and analysis. We utilize spatial importance maps to represent various scientific interests and take them as the input to a feature transformation network to guide latent generation. We further reduced the latent size by a lossless entropy encoding algorithm trained together with the autoencoder, improving the storage and memory efficiency. We qualitatively and quantitatively evaluate the effectiveness and efficiency of latent representations generated by our method with data from multiple scientific visualization applications.
In Defence of Visual Analytics Systems: Replies to Critics
Authors: Aoyu Wu, Dazhen Deng, Furui Cheng, Yingcai Wu, Shixia Liu, Huamin Qu
Published at Vis, 2022

The last decade has witnessed many visual analytics (VA) systems that make successful applications to wide-ranging domains like urban analytics and explainable AI. However, their research rigor and contributions have been extensively challenged within the visualization community. We come in defence of VA systems by contributing two interview studies for gathering critics and responses to those criticisms. First, we interview 24 researchers to collect criticisms the review comments on their VA work. Through an iterative coding and refinement process, the interview feedback is summarized into a list of 36 common criticisms. Second, we interview 17 researchers to validate our list and collect their responses, thereby discussing implications for defending and improving the scientific values and rigor of VA systems. We highlight that the presented knowledge is deep, extensive, but also imperfect, provocative, and controversial, and thus recommend reading with an inclusive and critical eye. We hope our work can provide thoughts and foundations for conducting VA research and spark discussions to promote the research field forward more rigorously and vibrantly.
Incorporation of Human Knowledge into Data Embeddings to Improve Pattern Significance and Interpretability
Authors: Jie Li 0006, Chun-qi Zhou
Published at Vis, 2022

Embedding is a common technique for analyzing multi-dimensional data. However, the embedding projection cannot always form significant and interpretable visual structures that foreshadow underlying data patterns. We propose an approach that incorporates human knowledge into data embeddings to improve pattern significance and interpretability. The core idea is (1) externalizing tacit human knowledge as explicit sample labels and (2) adding a classification loss in the embedding network to encode samples' classes. The approach pulls samples of the same class with similar data features closer in the projection, leading to more compact (significant) and class-consistent (interpretable) visual structures. We give an embedding network with a customized classification loss to implement the idea and integrate the network into a visualization system to form a workflow that supports flexible class creation and pattern exploration. Patterns found on open datasets in case studies, subjects' performance in a user study, and quantitative experiment results illustrate the general usability and effectiveness of the approach.
Interactive and Visual Prompt Engineering for Ad-hoc Task Adaptation with Large Language Models
Authors: Hendrik Strobelt, Albert Webson, Victor Sanh, Benjamin Hoover, Johanna Beyer, Hanspeter Pfister, Alexander M. Rush
Published at Vis, 2022

State-of-the-art neural language models can now be used to solve ad-hoc language tasks through zero-shot prompting without the need for supervised training. This approach has gained popularity in recent years, and researchers have demonstrated prompts that achieve strong accuracy on specific NLP tasks. However, finding a prompt for new tasks requires experimentation. Different prompt templates with different wording choices lead to significant accuracy differences. PromptIDE allows users to experiment with prompt variations, visualize prompt performance, and iteratively optimize prompts. We developed a workflow that allows users to first focus on model feedback using small data before moving on to a large data regime that allows empirical grounding of promising prompts using quantitative measures of the task. The tool then allows easy deployment of the newly created ad-hoc models. We demonstrate the utility of PromptIDE (demo: http://prompt.vizhub.ai) and our workflow using several real-world use cases.