DevLan/vispubs huggingface dataset:
MSz: An Efficient Parallel Algorithm for Correcting Morse-Smale Segmentations in Error-Bounded Lossy Compressors
Authors: Yuxiao Li 0002, Xin Liang 0001, Bei Wang 0001, Yongfeng Qiu, Lin Yan 0003, Hanqi Guo 0001
Published at Vis, 2024

This research explores a novel paradigm for preserving topological segmentations in existing error-bounded lossy compressors. Today's lossy compressors rarely consider preserving topologies such as Morse-Smale complexes, and the discrepancies in topology between original and decompressed datasets could potentially result in erroneous interpretations or even incorrect scientific conclusions. In this paper, we focus on preserving Morse-Smale segmentations in 2D/3D piecewise linear scalar fields, targeting the precise reconstruction of minimum/maximum labels induced by the integral line of each vertex. The key is to derive a series of edits during compression time. These edits are applied to the decompressed data, leading to an accurate reconstruction of segmentations while keeping the error within the prescribed error bound. To this end, we develop a workflow to fix extrema and integral lines alternatively until convergence within finite iterations. We accelerate each workflow component with shared-memory/GPU parallelism to make the performance practical for coupling with compressors. We demonstrate use cases with fluid dynamics, ocean, and cosmology application datasets with a significant acceleration with an NVIDIA A100 GPU
Objective Lagrangian Vortex Cores and their Visual Representations
Authors: Tobias Günther, Holger Theisel
Published at Vis, 2024

The numerical extraction of vortex cores from time-dependent fluid flow attracted much attention over the past decades. A commonly agreed upon vortex definition remained elusive since a proper vortex core needs to satisfy two hard constraints: it must be objective and Lagrangian. Recent methods on objectivization met the first but not the second constraint, since there was no formal guarantee that the resulting vortex coreline is indeed a pathline of the fluid flow. In this paper, we propose the first vortex core definition that is both objective and Lagrangian. Our approach restricts observer motions to follow along pathlines, which reduces the degrees of freedoms: we only need to optimize for an observer rotation that makes the observed flow as steady as possible. This optimization succeeds along Lagrangian vortex corelines and will result in a non-zero time-partial everywhere else. By performing this optimization at each point of a spatial grid, we obtain a residual scalar field, which we call vortex deviation error. The local minima on the grid serve as seed points for a gradient descent optimization that delivers sub-voxel accurate corelines. The visualization of both 2D and 3D vortex cores is based on the separation of the movement of the vortex core and the swirling flow behavior around it. While the vortex core is represented by a pathline, the swirling motion around it is visualized by streamlines in the correct frame. We demonstrate the utility of the approach on several 2D and 3D time-dependent vector fields'
ParamsDrag: Interactive Parameter Space Exploration via Image-Space Dragging
Authors: Guan Li 0002, Yang Liu 0469, Guihua Shan, Shiyu Cheng, Weiqun Cao, Junpeng Wang 0001, Ko-Chih Wang
Published at Vis, 2024

Numerical simulation serves as a cornerstone in scientific modeling, yet the process of fine-tuning simulation parameters poses significant challenges. Conventionally, parameter adjustment relies on extensive numerical simulations, data analysis, and expert insights, resulting in substantial computational costs and low efficiency. The emergence of deep learning in recent years has provided promising avenues for more efficient exploration of parameter spaces. However, existing approaches often lack intuitive methods for precise parameter adjustment and optimization. To tackle these challenges, we introduce ParamsDrag, a model that facilitates parameter space exploration through direct interaction with visualizations. Inspired by DragGAN, our ParamsDrag model operates in three steps. First, the generative component of ParamsDrag generates visualizations based on the input simulation parameters. Second, by directly dragging structure-related features in the visualizations, users can intuitively understand the controlling effect of different parameters. Third, with the understanding from the earlier step, users can steer ParamsDrag to produce dynamic visual outcomes. Through experiments conducted on real-world simulations and comparisons with state-of-the-art deep learning-based approaches, we demonstrate the efficacy of our solution
ParetoTracker: Understanding Population Dynamics in Multi-objective Evolutionary Algorithms through Visual Analytics
Authors: Zherui Zhang, Fan Yang 0054, Ran Cheng 0004, Yuxin Ma 0001
Published at Vis, 2024

Multi-objective evolutionary algorithms (MOEAs) have emerged as powerful tools for solving complex optimization problems characterized by multiple, often conflicting, objectives. While advancements have been made in computational efficiency as well as diversity and convergence of solutions, a critical challenge persists: the internal evolutionary mechanisms are opaque to human users. Drawing upon the successes of explainable AI in explaining complex algorithms and models, we argue that the need to understand the underlying evolutionary operators and population dynamics within MOEAs aligns well with a visual analytics paradigm. This paper introduces ParetoTracker, a visual analytics framework designed to support the comprehension and inspection of population dynamics in the evolutionary processes of MOEAs. Informed by preliminary literature review and expert interviews, the framework establishes a multi-level analysis scheme, which caters to user engagement and exploration ranging from examining overall trends in performance metrics to conducting fine-grained inspections of evolutionary operations. In contrast to conventional practices that require manual plotting of solutions for each generation, ParetoTracker facilitates the examination of temporal trends and dynamics across consecutive generations in an integrated visual interface. The effectiveness of the framework is demonstrated through case studies and expert interviews focused on widely adopted benchmark optimization problems
Path-based Design Model for Constructing and Exploring Alternative Visualisations
Authors: James Jackson, Panagiotis D. Ritsos, Peter W. S. Butcher, Jonathan C. Roberts
Published at Vis, 2024

We present a path-based design model and system for designing and creating visualisations. Our model represents a systematic approach to constructing visual representations of data or concepts following a predefined sequence of steps. The initial step involves outlining the overall appearance of the visualisation by creating a skeleton structure, referred to as a flowpath. Subsequently, we specify objects, visual marks, properties, and appearance, storing them in a gene. Lastly, we map data onto the flowpath, ensuring suitable morphisms. Alternative designs are created by exchanging values in the gene. For example, designs that share similar traits, are created by making small incremental changes to the gene. Our design methodology fosters the generation of diverse creative concepts, space-filling visualisations, and traditional formats like bar charts, circular plots and pie charts. Through our implementation we showcase the model in action. As an example application, we integrate the output visualisations onto a smartwatch and visualisation dashboards. In this article we (1) introduce, define and explain the path model and discuss possibilities for its use, (2) present our implementation, results, and evaluation, and (3) demonstrate and evaluate an application of its use on a mobile watch.
PhenoFlow: A Human-LLM Driven Visual Analytics System for Exploring Large and Complex Stroke Datasets
Authors: Jaeyoung Kim, Sihyeon Lee, Hyeon Jeon, Keon-Joo Lee, Hee-Joon Bae, Bohyoung Kim, Jinwook Seo
Published at Vis, 2024

Acute stroke demands prompt diagnosis and treatment to achieve optimal patient outcomes. However, the intricate and irregular nature of clinical data associated with acute stroke, particularly blood pressure (BP) measurements, presents substantial obstacles to effective visual analytics and decision-making. Through a year-long collaboration with experienced neurologists, we developed PhenoFlow, a visual analytics system that leverages the collaboration between human and Large Language Models (LLMs) to analyze the extensive and complex data of acute ischemic stroke patients. PhenoFlow pioneers an innovative workflow, where the LLM serves as a data wrangler while neurologists explore and supervise the output using visualizations and natural language interactions. This approach enables neurologists to focus more on decision-making with reduced cognitive load. To protect sensitive patient information, PhenoFlow only utilizes metadata to make inferences and synthesize executable codes, without accessing raw patient data. This ensures that the results are both reproducible and interpretable while maintaining patient privacy. The system incorporates a slice-and-wrap design that employs temporal folding to create an overlaid circular visualization. Combined with a linear bar graph, this design aids in exploring meaningful patterns within irregularly measured BP data. Through case studies, PhenoFlow has demonstrated its capability to support iterative analysis of extensive clinical datasets, reducing cognitive load and enabling neurologists to make well-informed decisions. Grounded in long-term collaboration with domain experts, our research demonstrates the potential of utilizing LLMs to tackle current challenges in data-driven clinical decision-making for acute ischemic stroke patients
Practices and Strategies in Responsive Thematic Map Design: A Report from Design Workshops with Experts
Authors: Sarah Schöttler, Uta Hinrichs, Benjamin Bach
Published at Vis, 2024

This paper discusses challenges and design strategies in responsive design for thematic maps in information visualization. Thematic maps pose a number of unique challenges for responsiveness, such as inflexible aspect ratios that do not easily adapt to varying screen dimensions, or densely clustered visual elements in urban areas becoming illegible at smaller scales. However, design guidance on how to best address these issues is currently lacking. We conducted design sessions with eight professional designers and developers of web-based thematic maps for information visualization. Participants were asked to redesign a given map for various screen sizes and aspect ratios and to describe their reasoning for when and how they adapted the design. We report general observations of practitioners' motivations, decision-making processes, and personal design frameworks. We then derive seven challenges commonly encountered in responsive maps, and 17 strategies to address them, such as repositioning elements, segmenting the map, or using alternative visualizations. We compile these challenges and strategies into an illustrated cheat sheet targeted at anyone designing or learning to design responsive maps. The cheat sheet is available online: responsive-vis.github.io/map-cheat-sheet
Precise Embodied Data Selection with Haptic Feedback while Retaining Room-Scale Visualisation Context
Authors: Shaozhang Dai, Yi Li 0058, Barrett Ens, Lonni Besançon, Tim Dwyer
Published at Vis, 2024

Room-scale immersive data visualisations provide viewers a wide-scale overview of a large dataset, but to interact precisely with individual data points they typically have to navigate to change their point of view. In traditional screen-based visualisations, focus-and-context techniques allow visualisation users to keep a full dataset in view while making detailed selections. Such techniques have been studied extensively on desktop to allow precise selection within large data sets, but they have not been explored in immersive 3D modalities. In this paper we develop a novel immersive focus-and-context technique based on a "magic portal" metaphor adapted specifically for data visualisation scenarios. An extendable-hand interaction technique is used to place a portal close to the region of interest. The other end of the portal then opens comfortably within the user's physical reach such that they can reach through to precisely select individual data points. Through a controlled study with 12 participants, we find strong evidence that portals reduce overshoots in selection and overall hand trajectory length, reducing arm and shoulder fatigue compared to ranged interaction without the portal. The portals also enable us to use a robot arm to provide haptic feedback for data within the limited volume of the portal region. In a second study with another 12 participants we found that haptics provided a positive experience (qualitative feedback) but did not significantly reduce fatigue. We demonstrate applications for portal-based selection through two use-case scenarios.
PREVis: Perceived Readability Evaluation for Visualizations
Authors: Anne-Flore Cabouat, Tingying He, Petra Isenberg, Tobias Isenberg 0001
Published at Vis, 2024

We developed and validated an instrument to measure the perceived readability in data visualization: PREVis. Researchers and practitioners can easily use this instrument as part of their evaluations to compare the perceived readability of different visual data representations. Our instrument can complement results from controlled experiments on user task performance or provide additional data during in-depth qualitative work such as design iterations when developing a new technique. Although readability is recognized as an essential quality of data visualizations, so far there has not been a unified definition of the construct in the context of visual representations. As a result, researchers often lack guidance for determining how to ask people to rate their perceived readability of a visualization. To address this issue, we engaged in a rigorous process to develop the first validated instrument targeted at the subjective readability of visual data representations. Our final instrument consists of 11 items across 4 dimensions: understandability, layout clarity, readability of data values, and readability of data patterns. We provide the questionnaire as a document with implementation guidelines on osf.io/9cg8j. Beyond this instrument, we contribute a discussion of how researchers have previously assessed visualization readability, and an analysis of the factors underlying perceived readability in visual data representations
Promises and Pitfalls: Using Large Language Models to Generate Visualization Items
Authors: Yuan Cui, Lily W. Ge, Yiren Ding, Lane Harrison, Fumeng Yang, Matthew Kay 0001
Published at Vis, 2024

Visualization items—factual questions about visualizations that ask viewers to accomplish visualization tasks—are regularly used in the field of information visualization as educational and evaluative materials. For example, researchers of visualization literacy require large, diverse banks of items to conduct studies where the same skill is measured repeatedly on the same participants. Yet, generating a large number of high-quality, diverse items requires significant time and expertise. To address the critical need for a large number of diverse visualization items in education and research, this paper investigates the potential for large language models (LLMs) to automate the generation of multiple-choice visualization items. Through an iterative design process, we develop the VILA (Visualization Items Generated by Large LAnguage Models) pipeline, for efficiently generating visualization items that measure people's ability to accomplish visualization tasks. We use the VILA pipeline to generate 1,404 candidate items across 12 chart types and 13 visualization tasks. In collaboration with 11 visualization experts, we develop an evaluation rulebook which we then use to rate the quality of all candidate items. The result is the VILA bank of ∼1,100 items. From this evaluation, we also identify and classify current limitations of the VILA pipeline, and discuss the role of human oversight in ensuring quality. In addition, we demonstrate an application of our work by creating a visualization literacy test, VILA-VLAT, which measures people's ability to complete a diverse set of tasks on various types of visualizations; comparing it to the existing VLAT, VILA-VLAT shows moderate to high convergent validity (R = 0.70). Lastly, we discuss the application areas of the VILA pipeline and the VILA bank and provide practical recommendations for their use. All supplemental materials are available at https://osf.io/ysrhq/.
ProvenanceWidgets: A Library of UI Control Elements to Track and Dynamically Overlay Analytic Provenance
Authors: Arpit Narechania, Kaustubh Odak, Mennatallah El-Assady, Alex Endert
Published at Vis, 2024

We present ProvenanceWidgets, a Javascript library of UI control elements such as radio buttons, checkboxes, and dropdowns to track and dynamically overlay a user's analytic provenance. These in situ overlays not only save screen space but also minimize the amount of time and effort needed to access the same information from elsewhere in the UI. In this paper, we discuss how we design modular UI control elements to track how often and how recently a user interacts with them and design visual overlays showing an aggregated summary as well as a detailed temporal history. We demonstrate the capability of ProvenanceWidgets by recreating three prior widget libraries: (1) Scented Widgets, (2) Phosphor objects, and (3) Dynamic Query Widgets. We also evaluated its expressiveness and conducted case studies with visualization developers to evaluate its effectiveness. We fnd that ProvenanceWidgets enables developers to implement custom provenance-tracking applications effectively. ProvenanceWidgets is available as open-source software at https://github.com/ProvenanceWidgets to help application developers build custom provenance-based systems.
PUREsuggest: Citation-based Literature Search and Visual Exploration with Keyword-controlled Rankings
Authors: Fabian Beck 0001
Published at Vis, 2024

Citations allow quickly identifying related research. If multiple publications are selected as seeds, specifc suggestions for related literature can be made based on the number of incoming and outgoing citation links to this selection. Interactively adding recommended publications to the selection refnes the next suggestion and incrementally builds a relevant collection of publications. Following this approach, the paper presents a search and foraging approach, PUREsuggest, which combines citation-based suggestions with augmented visualizations of the citation network. The focus and novelty of the approach is, frst, the transparency of how the rankings are explained visually and, second, that the process can be steered through user-defned keywords, which refect topics of interests. The system can be used to build new literature collections, to update and assess existing ones, as well as to use the collected literature for identifying relevant experts in the feld. We evaluated the recommendation approach through simulated sessions and performed a user study investigating search strategies and usage patterns supported by the interface.
Quality Metrics and Reordering Strategies for Revealing Patterns in BioFabric Visualizations
Authors: Johannes Fuchs 0001, Alexander Frings, Maria-Viktoria Heinle, Daniel A. Keim, Sara Di Bartolomeo
Published at Vis, 2024

Visualizing relational data is crucial for understanding complex connections between entities in social networks, political affiliations, or biological interactions. Well-known representations like node-link diagrams and adjacency matrices offer valuable insights, but their effectiveness relies on the ability to identify patterns in the underlying topological structure. Reordering strategies and layout algorithms play a vital role in the visualization process since the arrangement of nodes, edges, or cells influences the visibility of these patterns. The BioFabric visualization combines elements of node-link diagrams and adjacency matrices, leveraging the strengths of both, the visual clarity of node-link diagrams and the tabular organization of adjacency matrices. A unique characteristic of BioFabric is the possibility to reorder nodes and edges separately. This raises the question of which combination of layout algorithms best reveals certain patterns. In this paper, we discuss patterns and anti-patterns in BioFabric, such as staircases or escalators, relate them to already established patterns, and propose metrics to evaluate their quality. Based on these quality metrics, we compared combinations of well-established reordering techniques applied to BioFabric with a well-known benchmark data set. Our experiments indicate that the edge order has a stronger influence on revealing patterns than the node layout. The results show that the best combination for revealing staircases is a barycentric node layout, together with an edge order based on node indices and length. Our research contributes a first building block for many promising future research directions, which we also share and discuss. A free copy of this paper and all supplemental materials are available at https://osf.io/9mt8r/?view_only = b70dfbe550e3404f83059afdc60184c6.
Quantifying Emotional Responses to Immutable Data Characteristics and Designer Choices in Data Visualizations
Authors: Carter Blair, Xiyao Wang, Charles Perin
Published at Vis, 2024

Emotion is an important factor to consider when designing visualizations as it can impact the amount of trust viewers place in a visualization, how well they can retrieve information and understand the underlying data, and how much they engage with or connect to a visualization. We conducted five crowdsourced experiments to quantify the effects of color, chart type, data trend, data variability and data density on emotion (measured through self-reported arousal and valence). Results from our experiments show that there are multiple design elements which influence the emotion induced by a visualization and, more surprisingly, that certain data characteristics influence the emotion of viewers even when the data has no meaning. In light of these findings, we offer guidelines on how to use color, scale, and chart type to counterbalance and emphasize the emotional impact of immutable data characteristics.
Rapid and Precise Topological Comparison with Merge Tree Neural Networks
Authors: Yu Qin, Brittany Terese Fasy, Carola Wenk, Brian Summa
Published at Vis, 2024

Merge trees are a valuable tool in the scientific visualization of scalar fields; however, current methods for merge tree comparisons are computationally expensive, primarily due to the exhaustive matching between tree nodes. To address this challenge, we introduce the Merge Tree Neural Network (MTNN), a learned neural network model designed for merge tree comparison. The MTNN enables rapid and high-quality similarity computation. We first demonstrate how to train graph neural networks, which emerged as effective encoders for graphs, in order to produce embeddings of merge trees in vector spaces for efficient similarity comparison. Next, we formulate the novel MTNN model that further improves the similarity comparisons by integrating the tree and node embeddings with a new topological attention mechanism. We demonstrate the effectiveness of our model on real-world data in different domains and examine our model's generalizability across various datasets. Our experimental analysis demonstrates our approach's superiority in accuracy and efficiency. In particular, we speed up the prior state-of-the-art by more than 100× on the benchmark datasets while maintaining an error rate below 0.1%.