DevLan/vispubs huggingface dataset:
VAET: A Visual Analytics Approach for E-Transactions Time-Series
Authors: Cong Xie, Wei Chen 0001, Xinxin Huang, Yueqi Hu, Scott Barlowe, Jing Yang 0001
Published at VAST, 2014

Previous studies on E-transaction time-series have mainly focused on finding temporal trends of transaction behavior. Interesting transactions that are time-stamped and situation-relevant may easily be obscured in a large amount of information. This paper proposes a visual analytics system, Visual Analysis of E-transaction Time-Series (VAET), that allows the analysts to interactively explore large transaction datasets for insights about time-varying transactions. With a set of analyst-determined training samples, VAET automatically estimates the saliency of each transaction in a large time-series using a probabilistic decision tree learner. It provides an effective time-of-saliency (TOS) map where the analysts can explore a large number of transactions at different time granularities. Interesting transactions are further encoded with KnotLines, a compact visual representation that captures both the temporal variations and the contextual connection of transactions. The analysts can thus explore, select, and investigate knotlines of interest. A case study and user study with a real E-transactions dataset (26 million records) demonstrate the effectiveness of VAET.
VarifocalReader -- In-Depth Visual Analysis of Large Text Documents
Authors: Steffen Koch 0001, Markus John, Michael Wörner 0001, Andreas Müller 0012, Thomas Ertl
Published at VAST, 2014

Interactive visualization provides valuable support for exploring, analyzing, and understanding textual documents. Certain tasks, however, require that insights derived from visual abstractions are verified by a human expert perusing the source text. So far, this problem is typically solved by offering overview-detail techniques, which present different views with different levels of abstractions. This often leads to problems with visual continuity. Focus-context techniques, on the other hand, succeed in accentuating interesting subsections of large text documents but are normally not suited for integrating visual abstractions. With VarifocalReader we present a technique that helps to solve some of these approaches' problems by combining characteristics from both. In particular, our method simplifies working with large and potentially complex text documents by simultaneously offering abstract representations of varying detail, based on the inherent structure of the document, and access to the text itself. In addition, VarifocalReader supports intra-document exploration through advanced navigation concepts and facilitates visual analysis tasks. The approach enables users to apply machine learning techniques and search mechanisms as well as to assess and adapt these techniques. This helps to extract entities, concepts and other artifacts from texts. In combination with the automatic generation of intermediate text levels through topic segmentation for thematic orientation, users can test hypotheses or develop interesting new research questions. To illustrate the advantages of our approach, we provide usage examples from literature studies.
VASA: Interactive Computational Steering of Large Asynchronous Simulation Pipelines for Societal Infrastructure
Authors: Sungahn Ko, Jieqiong Zhao, Jing Xia, Shehzad Afzal, Derek Xiaoyu Wang, Greg Abram, Niklas Elmqvist, Len Kne, David Van Riper, Kelly P. Gaither, Shaun Kennedy, William J. Tolone, William Ribarsky, David S. Ebert
Published at VAST, 2014

We present VASA, a visual analytics platform consisting of a desktop application, a component model, and a suite of distributed simulation components for modeling the impact of societal threats such as weather, food contamination, and traffic on critical infrastructure such as supply chains, road networks, and power grids. Each component encapsulates a high-fidelity simulation model that together form an asynchronous simulation pipeline: a system of systems of individual simulations with a common data and parameter exchange format. At the heart of VASA is the Workbench, a visual analytics application providing three distinct features: (1) low-fidelity approximations of the distributed simulation components using local simulation proxies to enable analysts to interactively configure a simulation run; (2) computational steering mechanisms to manage the execution of individual simulation components; and (3) spatiotemporal and interactive methods to explore the combined results of a simulation run. We showcase the utility of the platform using examples involving supply chains during a hurricane as well as food contamination in a fast food restaurant chain.
Vismate: Interactive Visual Analysis of Station-Based Observation Data on Climate Changes
Authors: Jie Li 0006, Kang Zhang 0001, Zhaopeng Meng
Published at VAST, 2014

We present a new approach to visualizing the climate data of multi-dimensional, time-series, and geo-related characteristics. Our approach integrates three new highly interrelated visualization techniques, and uses the same input data types as in the traditional model-based analysis methods. As the main visualization view, Global Radial Map is used to identify the overall state of climate changes and provide users with a compact and intuitive view for analyzing spatial and temporal patterns at the same time. Other two visualization techniques, providing complementary views, are specialized in analysing time trend and detecting abnormal cases, which are two important analysis tasks in any climate change study. Case studies and expert reviews have been conducted, through which the effectiveness and scalability of the proposed approach has been confirmed.
Visual Abstraction and Exploration of Multi-class Scatterplots
Authors: Haidong Chen, Wei Chen 0001, Honghui Mei, Zhiqi Liu, Kun Zhou, Weifeng Chen 0002, Wentao Gu, Kwan-Liu Ma
Published at VAST, 2014

Scatterplots are widely used to visualize scatter dataset for exploring outliers, clusters, local trends, and correlations. Depicting multi-class scattered points within a single scatterplot view, however, may suffer from heavy overdraw, making it inefficient for data analysis. This paper presents a new visual abstraction scheme that employs a hierarchical multi-class sampling technique to show a feature-preserving simplification. To enhance the density contrast, the colors of multiple classes are optimized by taking the multi-class point distributions into account. We design a visual exploration system that supports visual inspection and quantitative analysis from different perspectives. We have applied our system to several challenging datasets, and the results demonstrate the efficiency of our approach.
Visual Analysis of Patterns in Multiple Amino Acid Mutation Graphs
Authors: Olav Lenz, Frank Keul, Sebastian Bremm, Kay Hamacher, Tatiana von Landesberger
Published at VAST, 2014

Proteins are essential parts in all living organisms. They consist of sequences of amino acids. An interaction with reactive agent can stimulate a mutation at a specific position in the sequence. This mutation may set off a chain reaction, which effects other amino acids in the protein. Chain reactions need to be analyzed, as they may invoke unwanted side effects in drug treatment. A mutation chain is represented by a directed acyclic graph, where amino acids are connected by their mutation dependencies. As each amino acid may mutate individually, many mutation graphs exist. To determine important impacts of mutations, experts need to analyze and compare common patterns in these mutations graphs. Experts, however, lack suitable tools for this purpose. We present a new system for the search and the exploration of frequent patterns (i.e., motifs) in mutation graphs. We present a fast pattern search algorithm specifically developed for finding biologically relevant patterns in many mutation graphs (i.e., many labeled acyclic directed graphs). Our visualization system allows an interactive exploration and comparison of the found patterns. It enables locating the found patterns in the mutation graphs and in the 3D protein structures. In this way, potentially interesting patterns can be discovered. These patterns serve as starting point for a further biological analysis. In cooperation with biologists, we use our approach for analyzing a real world data set based on multiple HIV protease sequences.
Visual Analysis of Public Utility Service Problems in a Metropolis
Authors: Jiawan Zhang, E. Yanli, Jing Ma, Yahui Zhao, Binghan Xu, Liting Sun, Jinyan Chen, Xiaoru Yuan
Published at VAST, 2014

Issues about city utility services reported by citizens can provide unprecedented insights into the various aspects of such services. Analysis of these issues can improve living quality through evidence-based decision making. However, these issues are complex, because of the involvement of spatial and temporal components, in addition to having multi-dimensional and multivariate natures. Consequently, exploring utility service problems and creating visual representations are difficult. To analyze these issues, we propose a visual analytics process based on the main tasks of utility service management. We also propose an aggregate method that transforms numerous issues into legible events and provide visualizations for events. In addition, we provide a set of tools and interaction techniques to explore such issues. Our approach enables administrators to make more informed decisions.
Visual Analytics for Comparison of Ocean Model Output with Reference Data: Detecting and Analyzing Geophysical Processes Using Clustering Ensembles
Authors: Patrick Köthur, Mike Sips, Henryk Dobslaw, Doris Dransch
Published at VAST, 2014

Researchers assess the quality of an ocean model by comparing its output to that of a previous model version or to observations. One objective of the comparison is to detect and to analyze differences and similarities between both data sets regarding geophysical processes, such as particular ocean currents. This task involves the analysis of thousands or hundreds of thousands of geographically referenced temporal profiles in the data. To cope with the amount of data, modelers combine aggregation of temporal profiles to single statistical values with visual comparison. Although this strategy is based on experience and a well-grounded body of expert knowledge, our discussions with domain experts have shown that it has two limitations: (1) using a single statistical measure results in a rather limited scope of the comparison and in significant loss of information, and (2) the decisions modelers have to make in the process may lead to important aspects being overlooked.
Visual Analytics for Complex Engineering Systems: Hybrid Visual Steering of Simulation Ensembles
Authors: Kresimir Matkovic, Denis Gracanin, Rainer Splechtna, Mario Jelovic, Benedikt Stehno, Helwig Hauser, Werner Purgathofer
Published at VAST, 2014

In this paper we propose a novel approach to hybrid visual steering of simulation ensembles. A simulation ensemble is a collection of simulation runs of the same simulation model using different sets of control parameters. Complex engineering systems have very large parameter spaces so a naïve sampling can result in prohibitively large simulation ensembles. Interactive steering of simulation ensembles provides the means to select relevant points in a multi-dimensional parameter space (design of experiment). Interactive steering efficiently reduces the number of simulation runs needed by coupling simulation and visualization and allowing a user to request new simulations on the fly. As system complexity grows, a pure interactive solution is not always sufficient. The new approach of hybrid steering combines interactive visual steering with automatic optimization. Hybrid steering allows a domain expert to interactively (in a visualization) select data points in an iterative manner, approximate the values in a continuous region of the simulation space (by regression) and automatically find the “best” points in this continuous region based on the specified constraints and objectives (by optimization). We argue that with the full spectrum of optimization options, the steering process can be improved substantially. We describe an integrated system consisting of a simulation, a visualization, and an optimization component. We also describe typical tasks and propose an interactive analysis workflow for complex engineering systems. We demonstrate our approach on a case study from automotive industry, the optimization of a hydraulic circuit in a high pressure common rail Diesel injection system.
Visual Exploration of Sparse Traffic Trajectory Data
Authors: Zuchao Wang, Tangzhi Ye, Min Lu 0002, Xiaoru Yuan, Huamin Qu, Jacky Yuan, Qianliang Wu
Published at VAST, 2014

In this paper, we present a visual analysis system to explore sparse traffic trajectory data recorded by transportation cells. Such data contains the movements of nearly all moving vehicles on the major roads of a city. Therefore it is very suitable for macro-traffic analysis. However, the vehicle movements are recorded only when they pass through the cells. The exact tracks between two consecutive cells are unknown. To deal with such uncertainties, we first design a local animation, showing the vehicle movements only in the vicinity of cells. Besides, we ignore the micro-behaviors of individual vehicles, and focus on the macro-traffic patterns. We apply existing trajectory aggregation techniques to the dataset, studying cell status pattern and inter-cell flow pattern. Beyond that, we propose to study the correlation between these two patterns with dynamic graph visualization techniques. It allows us to check how traffic congestion on one cell is correlated with traffic flows on neighbouring links, and with route selection in its neighbourhood. Case studies show the effectiveness of our system.
Visual Methods for Analyzing Probabilistic Classification Data
Authors: Bilal Alsallakh, Allan Hanbury, Helwig Hauser, Silvia Miksch, Andreas Rauber
Published at VAST, 2014

Multi-class classifiers often compute scores for the classification samples describing probabilities to belong to different classes. In order to improve the performance of such classifiers, machine learning experts need to analyze classification results for a large number of labeled samples to find possible reasons for incorrect classification. Confusion matrices are widely used for this purpose. However, they provide no information about classification scores and features computed for the samples. We propose a set of integrated visual methods for analyzing the performance of probabilistic classifiers. Our methods provide insight into different aspects of the classification results for a large number of samples. One visualization emphasizes at which probabilities these samples were classified and how these probabilities correlate with classification error in terms of false positives and false negatives. Another view emphasizes the features of these samples and ranks them by their separation power between selected true and false classifications. We demonstrate the insight gained using our technique in a benchmarking classification dataset, and show how it enables improving classification performance by interactively defining and evaluating post-classification rules.
Visual Reconciliation of Alternative Similarity Spaces in Climate Modeling
Authors: Jorge Poco, Aritra Dasgupta, Yaxing Wei, William W. Hargrove, Christopher R. Schwalm, Deborah N. Huntzinger, Robert B. Cook, Enrico Bertini, Cláudio T. Silva
Published at VAST, 2014

Visual data analysis often requires grouping of data objects based on their similarity. In many application domains researchers use algorithms and techniques like clustering and multidimensional scaling to extract groupings from data. While extracting these groups using a single similarity criteria is relatively straightforward, comparing alternative criteria poses additional challenges. In this paper we define visual reconciliation as the problem of reconciling multiple alternative similarity spaces through visualization and interaction. We derive this problem from our work on model comparison in climate science where climate modelers are faced with the challenge of making sense of alternative ways to describe their models: one through the output they generate, another through the large set of properties that describe them. Ideally, they want to understand whether groups of models with similar spatio-temporal behaviors share similar sets of criteria or, conversely, whether similar criteria lead to similar behaviors. We propose a visual analytics solution based on linked views, that addresses this problem by allowing the user to dynamically create, modify and observe the interaction among groupings, thereby making the potential explanations apparent. We present case studies that demonstrate the usefulness of our technique in the area of climate science.
Visualizing Mobility of Public Transportation System
Authors: Wei Zeng 0004, Chi-Wing Fu, Stefan Müller Arisona, Alexander Erath, Huamin Qu
Published at VAST, 2014

Public transportation systems (PTSs) play an important role in modern cities, providing shared/massive transportation services that are essential for the general public. However, due to their increasing complexity, designing effective methods to visualize and explore PTS is highly challenging. Most existing techniques employ network visualization methods and focus on showing the network topology across stops while ignoring various mobility-related factors such as riding time, transfer time, waiting time, and round-the-clock patterns. This work aims to visualize and explore passenger mobility in a PTS with a family of analytical tasks based on inputs from transportation researchers. After exploring different design alternatives, we come up with an integrated solution with three visualization modules: isochrone map view for geographical information, isotime flow map view for effective temporal information comparison and manipulation, and OD-pair journey view for detailed visual analysis of mobility factors along routes between specific origin-destination pairs. The isotime flow map linearizes a flow map into a parallel isoline representation, maximizing the visualization of mobility information along the horizontal time axis while presenting clear and smooth pathways from origin to destinations. Moreover, we devise several interactive visual query methods for users to easily explore the dynamics of PTS mobility over space and time. Lastly, we also construct a PTS mobility model from millions of real passenger trajectories, and evaluate our visualization techniques with assorted case studies with the transportation researchers.
Weaving a Carpet from Log Entries: A Network Security Visualization Built with Co-Creation
Authors: Johannes Landstorfer, Ivo Herrmann, Jan-Erik Stange, Marian Dörk, Reto Wettach
Published at VAST, 2014

We created a pixel map for multivariate data based on an analysis of the needs of network security engineers. Parameters of a log record are shown as pixels and these pixels are stacked to represent a record. This allows a broad view of a data set on one screen while staying very close to the raw data and to expose common and rare patterns of user behavior through the visualization itself (the "Carpet"). Visualizations that immediately point to areas of suspicious activity without requiring extensive filtering, help network engineers investigating unknown computer security incidents. Most of them, however, have limited knowledge of advanced visualization techniques, while many designers and data scientists are unfamiliar with computer security topics. To bridge this gap, we developed visualizations together with engineers, following a co-creative process. We will show how we explored the scope of the engineers' tasks and how we jointly developed ideas and designs. Our expert evaluation indicates that this visualization helps to scan large parts of log files quickly and to define areas of interest for closer inspection.
YMCA - Your Mesh Comparison Application
Authors: Johanna Schmidt, Reinhold Preiner, Thomas Auzinger, Michael Wimmer 0001, M. Eduard Gröller, Stefan Bruckner
Published at VAST, 2014

Polygonal meshes can be created in several different ways. In this paper we focus on the reconstruction of meshes from point clouds, which are sets of points in 3D. Several algorithms that tackle this task already exist, but they have different benefits and drawbacks, which leads to a large number of possible reconstruction results (i.e., meshes). The evaluation of those techniques requires extensive comparisons between different meshes which is up to now done by either placing images of rendered meshes side-by-side, or by encoding differences by heat maps. A major drawback of both approaches is that they do not scale well with the number of meshes. This paper introduces a new comparative visual analysis technique for 3D meshes which enables the simultaneous comparison of several meshes and allows for the interactive exploration of their differences. Our approach gives an overview of the differences of the input meshes in a 2D view. By selecting certain areas of interest, the user can switch to a 3D representation and explore the spatial differences in detail. To inspect local variations, we provide a magic lens tool in 3D. The location and size of the lens provide further information on the variations of the reconstructions in the selected area. With our comparative visualization approach, differences between several mesh reconstruction algorithms can be easily localized and inspected.
A Robust Parity Test for Extracting Parallel Vectors in 3D
Authors: Tao Ju, Minxin Cheng, Xu Wang, Ye Duan
Published at SciVis, 2014

Parallel vectors (PV), the loci where two vector fields are parallel, are commonly used to represent curvilinear features in 3D for data visualization. Methods for extracting PV usually operate on a 3D grid and start with detecting seed points on a cell face. We propose, to the best of our knowledge, the first provably correct test that determines the parity of the number of PV points on a cell face. The test only needs to sample along the face boundary and works for any choice of the two vector fields. A discretization of the test is described, validated, and compared with existing tests that are also based on boundary sampling. The test can guide PV-extraction algorithms to ensure closed curves wherever the input fields are continuous, which we exemplify in extracting ridges and valleys of scalar functions.
ADR - Anatomy-Driven Reformation
Authors: Jan Kretschmer, Grzegorz Soza, Christian Tietjen, Michael Sühling, Bernhard Preim, Marc Stamminger
Published at SciVis, 2014

Dedicated visualization methods are among the most important tools of modern computer-aided medical applications. Reformation methods such as Multiplanar Reformation or Curved Planar Reformation have evolved as useful tools that facilitate diagnostic and therapeutic work. In this paper, we present a novel approach that can be seen as a generalization of Multiplanar Reformation to curved surfaces. The main concept is to generate reformatted medical volumes driven by the individual anatomical geometry of a specific patient. This process generates flat views of anatomical structures that facilitate many tasks such as diagnosis, navigation and annotation. Our reformation framework is based on a non-linear as-rigid-as-possible volumetric deformation scheme that uses generic triangular surface meshes as input. To manage inevitable distortions during reformation, we introduce importance maps which allow controlling the error distribution and improving the overall visual quality in areas of elevated interest. Our method seamlessly integrates with well-established concepts such as the slice-based inspection of medical datasets and we believe it can improve the overall efficiency of many medical workflows. To demonstrate this, we additionally present an integrated visualization system and discuss several use cases that substantiate its benefits.