DevLan/vispubs huggingface dataset:
The Mixture Graph-A Data Structure for Compressing, Rendering, and Querying Segmentation Histograms
Authors: Khaled A. Al-Thelaya, Marco Agus, Jens Schneider 0002
Published at SciVis, 2020

In this paper, we present a novel data structure, called the Mixture Graph. This data structure allows us to compress, render, and query segmentation histograms. Such histograms arise when building a mipmap of a volume containing segmentation IDs. Each voxel in the histogram mipmap contains a convex combination (mixture) of segmentation IDs. Each mixture represents the distribution of IDs in the respective voxel's children. Our method factorizes these mixtures into a series of linear interpolations between exactly two segmentation IDs. The result is represented as a directed acyclic graph (DAG) whose nodes are topologically ordered. Pruning replicate nodes in the tree followed by compression allows us to store the resulting data structure efficiently. During rendering, transfer functions are propagated from sources (leafs) through the DAG to allow for efficient, pre-filtered rendering at interactive frame rates. Assembly of histogram contributions across the footprint of a given volume allows us to efficiently query partial histograms, achieving up to 178 x speed-up over naive parallelized range queries. Additionally, we apply the Mixture Graph to compute correctly pre-filtered volume lighting and to interactively explore segments based on shape, geometry, and orientation using multi-dimensional transfer functions.
TopoMap: A 0-dimensional Homology Preserving Projection of High-Dimensional Data
Authors: Harish Doraiswamy, Julien Tierny, Paulo J. S. Silva, Luis Gustavo Nonato, Cláudio T. Silva
Published at SciVis, 2020

Multidimensional Projection is a fundamental tool for high-dimensional data analytics and visualization. With very few exceptions, projection techniques are designed to map data from a high-dimensional space to a visual space so as to preserve some dissimilarity (similarity) measure, such as the Euclidean distance for example. In fact, although adopting distinct mathematical formulations designed to favor different aspects of the data, most multidimensional projection methods strive to preserve dissimilarity measures that encapsulate geometric properties such as distances or the proximity relation between data objects. However, geometric relations are not the only interesting property to be preserved in a projection. For instance, the analysis of particular structures such as clusters and outliers could be more reliably performed if the mapping process gives some guarantee as to topological invariants such as connected components and loops. This paper introduces TopoMap, a novel projection technique which provides topological guarantees during the mapping process. In particular, the proposed method performs the mapping from a high-dimensional space to a visual space, while preserving the 0-dimensional persistence diagram of the Rips filtration of the high-dimensional data, ensuring that the filtrations generate the same connected components when applied to the original as well as projected data. The presented case studies show that the topological guarantee provided by TopoMap not only brings confidence to the visual analytic process but also can be used to assist in the assessment of other projection methods.
Uncertainty in Continuous Scatterplots, Continuous Parallel Coordinates, and Fibers
Authors: Boyan Zheng, Filip Sadlo
Published at SciVis, 2020

In this paper, we introduce uncertainty to continuous scatterplots and continuous parallel coordinates. We derive respective models, validate them with sampling-based brute-force schemes, and present acceleration strategies for their computation. At the same time, we show that our approach lends itself as well for introducing uncertainty into the definition of fibers in bivariate data. Finally, we demonstrate the properties and the utility of our approach using specifically designed synthetic cases and simulated data.
Uncertainty-Oriented Ensemble Data Visualization and Exploration using Variable Spatial Spreading
Authors: Mingdong Zhang, Li Chen, Quan Li, Xiaoru Yuan, Junhai Yong
Published at SciVis, 2020

As an important method of handling potential uncertainties in numerical simulations, ensemble simulation has been widely applied in many disciplines. Visualization is a promising and powerful ensemble simulation analysis method. However, conventional visualization methods mainly aim at data simplification and highlighting important information based on domain expertise instead of providing a flexible data exploration and intervention mechanism. Trial-and-error procedures have to be repeatedly conducted by such approaches. To resolve this issue, we propose a new perspective of ensemble data analysis using the attribute variable dimension as the primary analysis dimension. Particularly, we propose a variable uncertainty calculation method based on variable spatial spreading. Based on this method, we design an interactive ensemble analysis framework that provides a flexible interactive exploration of the ensemble data. Particularly, the proposed spreading curve view, the region stability heat map view, and the temporal analysis view, together with the commonly used 2D map view, jointly support uncertainty distribution perception, region selection, and temporal analysis, as well as other analysis requirements. We verify our approach by analyzing a real-world ensemble simulation dataset. Feedback collected from domain experts confirms the efficacy of our framework.
V2V: A Deep Learning Approach to Variable-to-Variable Selection and Translation for Multivariate Time-Varying Data
Authors: Jun Han 0010, Hao Zheng 0006, Yunhao Xing, Danny Ziyi Chen, Chaoli Wang 0001
Published at SciVis, 2020

We present V2V, a novel deep learning framework, as a general-purpose solution to the variable-to-variable (V2V) selection and translation problem for multivariate time-varying data (MTVD) analysis and visualization. V2V leverages a representation learning algorithm to identify transferable variables and utilizes Kullback-Leibler divergence to determine the source and target variables. It then uses a generative adversarial network (GAN) to learn the mapping from the source variable to the target variable via the adversarial, volumetric, and feature losses. V2V takes the pairs of time steps of the source and target variable as input for training, Once trained, it can infer unseen time steps of the target variable given the corresponding time steps of the source variable. Several multivariate time-varying data sets of different characteristics are used to demonstrate the effectiveness of V2V, both quantitatively and qualitatively. We compare V2V against histogram matching and two other deep learning solutions (Pix2Pix and CycleGAN).
VC-Net: Deep Volume-Composition Networks for Segmentation and Visualization of Highly Sparse and Noisy Image Data
Authors: Yifan Wang, Guoli Yan, Haikuan Zhu, Sagar Buch, Ying Wang 0060, E. Mark Haacke, Jing Hua 0001, Zichun Zhong
Published at SciVis, 2020

The fundamental motivation of the proposed work is to present a new visualization-guided computing paradigm to combine direct 3D volume processing and volume rendered clues for effective 3D exploration. For example, extracting and visualizing microstructures in-vivo have been a long-standing challenging problem. However, due to the high sparseness and noisiness in cerebrovasculature data as well as highly complex geometry and topology variations of micro vessels, it is still extremely challenging to extract the complete 3D vessel structure and visualize it in 3D with high fidelity. In this paper, we present an end-to-end deep learning method, VC-Net, for robust extraction of 3D microvascular structure through embedding the image composition, generated by maximum intensity projection (MIP), into the 3D volumetric image learning process to enhance the overall performance. The core novelty is to automatically leverage the volume visualization technique (e.g., MIP - a volume rendering scheme for 3D volume images) to enhance the 3D data exploration at the deep learning level. The MIP embedding features can enhance the local vessel signal (through canceling out the noise) and adapt to the geometric variability and scalability of vessels, which is of great importance in microvascular tracking. A multi-stream convolutional neural network (CNN) framework is proposed to effectively learn the 3D volume and 2D MIP feature vectors, respectively, and then explore their inter-dependencies in a joint volume-composition embedding space by unprojecting the 2D feature vectors into the 3D volume embedding space. It is noted that the proposed framework can better capture the small/micro vessels and improve the vessel connectivity. To our knowledge, this is the first time that a deep learning framework is proposed to construct a joint convolutional embedding space, where the computed vessel probabilities from volume rendering based 2D projection and 3D volume can be explored and integrated synergistically. Experimental results are evaluated and compared with the traditional 3D vessel segmentation methods and the state-of-the-art in deep learning, by using extensive public and real patient (micro- )cerebrovascular image datasets. The application of this accurate segmentation and visualization of sparse and complicated 3D microvascular structure facilitated by our method demonstrates the potential in a powerful MR arteriogram and venogram diagnosis of vascular disease.
Visual Analysis of Large Multivariate Scattered Data using Clustering and Probabilistic Summaries
Authors: Tobias Rapp, Christoph Peters 0002, Carsten Dachsbacher
Published at SciVis, 2020

Rapidly growing data sizes of scientific simulations pose significant challenges for interactive visualization and analysis techniques. In this work, we propose a compact probabilistic representation to interactively visualize large scattered datasets. In contrast to previous approaches that represent blocks of volumetric data using probability distributions, we model clusters of arbitrarily structured multivariate data. In detail, we discuss how to efficiently represent and store a high-dimensional distribution for each cluster. We observe that it suffices to consider low-dimensional marginal distributions for two or three data dimensions at a time to employ common visual analysis techniques. Based on this observation, we represent high-dimensional distributions by combinations of low-dimensional Gaussian mixture models. We discuss the application of common interactive visual analysis techniques to this representation. In particular, we investigate several frequency-based views, such as density plots in 1D and 2D, density-based parallel coordinates, and a time histogram. We visualize the uncertainty introduced by the representation, discuss a level-of-detail mechanism, and explicitly visualize outliers. Furthermore, we propose a spatial visualization by splatting anisotropic 3D Gaussians for which we derive a closed-form solution. Lastly, we describe the application of brushing and linking to this clustered representation. Our evaluation on several large, real-world datasets demonstrates the scaling of our approach.
Visualization of Human Spine Biomechanics for Spinal Surgery
Authors: Pepe Eulzer, Sabine Bauer 0001, Francis Kilian, Kai Lawonn
Published at SciVis, 2020

We propose a visualization application, designed for the exploration of human spine simulation data. Our goal is to support research in biomechanical spine simulation and advance efforts to implement simulation-backed analysis in surgical applications. Biomechanical simulation is a state-of-the-art technique for analyzing load distributions of spinal structures. Through the inclusion of patient-specific data, such simulations may facilitate personalized treatment and customized surgical interventions. Difficulties in spine modelling and simulation can be partly attributed to poor result representation, which may also be a hindrance when introducing such techniques into a clinical environment. Comparisons of measurements across multiple similar anatomical structures and the integration of temporal data make commonly available diagrams and charts insufficient for an intuitive and systematic display of results. Therefore, we facilitate methods such as multiple coordinated views, abstraction and focus and context to display simulation outcomes in a dedicated tool. $\mathrm{By}$ linking the result data with patient-specific anatomy, we make relevant parameters tangible for clinicians. Furthermore, we introduce new concepts to show the directions of impact force vectors, which were not accessible before. We integrated our toolset into a spine segmentation and simulation pipeline and evaluated our methods with both surgeons and biomechanical researchers. When comparing our methods against standard representations that are currently in use, we found increases in accuracy and speed in data exploration tasks. $\mathrm{in}$ a qualitative review, domain experts deemed the tool highly useful when dealing with simulation result data, which typically combines time-dependent patient movement and the resulting force distributions on spinal structures.
A Bayesian cognition approach for belief updating of correlation judgement through uncertainty visualizations
Authors: Alireza Karduni, Douglas Markant, Ryan Wesslen, Wenwen Dou
Published at InfoVis, 2020

Understanding correlation judgement is important to designing effective visualizations of bivariate data. Prior work on correlation perception has not considered how factors including prior beliefs and uncertainty representation impact such judgements. The present work focuses on the impact of uncertainty communication when judging bivariate visualizations. Specifically, we model how users update their beliefs about variable relationships after seeing a scatterplot with and without uncertainty representation. To model and evaluate the belief updating, we present three studies. Study 1 focuses on a proposed “Line + Cone” visual elicitation method for capturing users' beliefs in an accurate and intuitive fashion. The findings reveal that our proposed method of belief solicitation reduces complexity and accurately captures the users' uncertainty about a range of bivariate relationships. Study 2 leverages the “Line + Cone” elicitation method to measure belief updating on the relationship between different sets of variables when seeing correlation visualization with and without uncertainty representation. We compare changes in users beliefs to the predictions of Bayesian cognitive models which provide normative benchmarks for how users should update their prior beliefs about a relationship in light of observed data. The findings from Study 2 revealed that one of the visualization conditions with uncertainty communication led to users being slightly more confident about their judgement compared to visualization without uncertainty information. Study 3 builds on findings from Study 2 and explores differences in belief update when the bivariate visualization is congruent or incongruent with users' prior belief. Our results highlight the effects of incorporating uncertainty representation, and the potential of measuring belief updating on correlation judgement with Bayesian cognitive models.
A Design Space of Vision Science Methods for Visualization Research
Authors: Madison A. Elliott, Christine Nothelfer, Cindy Xiong, Danielle Albers Szafir
Published at InfoVis, 2020

A growing number of efforts aim to understand what people see when using a visualization. These efforts provide scientific grounding to complement design intuitions, leading to more effective visualization practice. However, published visualization research currently reflects a limited set of available methods for understanding how people process visualized data. Alternative methods from vision science offer a rich suite of tools for understanding visualizations, but no curated collection of these methods exists in either perception or visualization research. We introduce a design space of experimental methods for empirically investigating the perceptual processes involved with viewing data visualizations to ultimately inform visualization design guidelines. This paper provides a shared lexicon for facilitating experimental visualization research. We discuss popular experimental paradigms, adjustment types, response types, and dependent measures used in vision science research, rooting each in visualization examples. We then discuss the advantages and limitations of each technique. Researchers can use this design space to create innovative studies and progress scientific understanding of design choices and evaluations in visualization. We highlight a history of collaborative success between visualization and vision science research and advocate for a deeper relationship between the two fields that can elaborate on and extend the methodological design space for understanding visualization and vision.
A Generic Framework and Library for Exploration of Small Multiples through Interactive Piling
Authors: Fritz Lekschas, Xinyi Zhou 0005, Wei Chen 0001, Nils Gehlenborg, Benjamin Bach, Hanspeter Pfister
Published at InfoVis, 2020

Small multiples are miniature representations of visual information used generically across many domains. Handling large numbers of small multiples imposes challenges on many analytic tasks like inspection, comparison, navigation, or annotation. To address these challenges, we developed a framework and implemented a library called PILlNG.JS for designing interactive piling interfaces. Based on the piling metaphor, such interfaces afford flexible organization, exploration, and comparison of large numbers of small multiples by interactively aggregating visual objects into piles. Based on a systematic analysis of previous work, we present a structured design space to guide the design of visual piling interfaces. To enable designers to efficiently build their own visual piling interfaces, PILlNG.JS provides a declarative interface to avoid having to write low-level code and implements common aspects of the design space. An accompanying GUI additionally supports the dynamic configuration of the piling interface. We demonstrate the expressiveness of PILlNG.JS with examples from machine learning, immunofluorescence microscopy, genomics, and public health.
A Simple Pipeline for Coherent Grid Maps
Authors: Wouter Meulemans, Max Sondag, Bettina Speckmann
Published at InfoVis, 2020

Grid maps are spatial arrangements of simple tiles (often squares or hexagons), each of which represents a spatial element. They are an established, effective way to show complex data per spatial element, using visual encodings within each tile ranging from simple coloring to nested small-multiples visualizations. An effective grid map is coherent with the underlying geographic space: the tiles maintain the contiguity, neighborhoods and identifiability of the corresponding spatial elements, while the grid map as a whole maintains the global shape of the input. Of particular importance are salient local features of the global shape which need to be represented by tiles assigned to the appropriate spatial elements. State-of-the-art techniques can adequately deal only with simple cases, such as close-to-uniform spatial distributions or global shapes that have few characteristic features. We introduce a simple fully-automated 3-step pipeline for computing coherent grid maps. Each step is a well-studied problem: shape decomposition based on salient features, tile-based Mosaic Cartograms, and point-set matching. Our pipeline is a seamless composition of existing techniques for these problems and results in high-quality grid maps. We provide an implementation, demonstrate the efficacy of our approach on various complex datasets, and compare it to the state-of-the-art.
A Structured Review of Data Management Technology for Interactive Visualization and Analysis
Authors: Leilani Battle, Carlos Scheidegger
Published at InfoVis, 2020

In the last two decades, interactive visualization and analysis have become a central tool in data-driven decision making. Concurrently to the contributions in data visualization, research in data management has produced technology that directly benefits interactive analysis. Here, we contribute a systematic review of 30 years of work in this adjacent field, and highlight techniques and principles we believe to be underappreciated in visualization work. We structure our review along two axes. First, we use task taxonomies from the visualization literature to structure the space of interactions in usual systems. Second, we created a categorization of data management work that strikes a balance between specificity and generality. Concretely, we contribute a characterization of 131 research papers along these two axes. We find that five notions in data management venues fit interactive visualization systems well: materialized views, approximate query processing, user modeling and query prediction, muiti-query optimization, lineage techniques, and indexing techniques. In addition, we find a preponderance of work in materialized views and approximate query processing, most targeting a limited subset of the interaction tasks in the taxonomy we used. This suggests natural avenues of future research both in visualization and data management. Our categorization both changes how we visualization researchers design and build our systems, and highlights where future work is necessary.
A Survey of Text Alignment Visualization
Authors: Tariq Yousef, Stefan Jänicke
Published at InfoVis, 2020

Text alignment is one of the fundamental techniques text-related domains like natural language processing, computational linguistics, and digital humanities. It compares two or more texts with each other aiming to find similar textual patterns, or to estimate in general how different or similar the texts are. Visualizing alignment results is an essential task, because it helps researchers getting a comprehensive overview of individual findings and the overall pattern structure. Different approaches have been developed to visualize and help making sense of these patterns depending on text size, alignment methods, and, most importantly, the underlying research tasks demanding for alignment. On the basis of those tasks, we reviewed existing text alignment visualization approaches, and discuss their advantages and drawbacks. We finally derive design implications and shed light on related future challenges.