DeepNLP/ICML-2024-Accepted-Papers huggingface dataset:
Quasi-Monte Carlo Features for Kernel Approximation
Authors: Zhen Huang, Jiajin Sun, Yian Huang

Random features (Rahimi & Recht, 2007), based on Monte Carlo (MC) method, is one of the most popular approximation techniques to accelerate kernel methods. We show for a class of kernels, including Gaussian kernels, quasi-Monte Carlo (QMC) methods can be used in place of MC to improve the approximation error from $O_P(1/\sqrt{M})$ to $O(1/M)$ (up to logarithmic factors), for estimating both the kernel function itself and the associated integral operator, where $M$ is the number of features being used. Furthermore, we demonstrate the advantage of QMC features in the case of kernel ridge regression, where theoretically, fewer random features suffice to guarantee the same convergence rate of the excess risk. In practice, the QMC kernel approximation approach is easily implementable and shows superior performance, as supported by the empirical evidence provided in the paper.
Position: TrustLLM: Trustworthiness in Large Language Models
Authors: Yue Huang, Lichao Sun, Haoran Wang, Siyuan Wu, Qihui Zhang, Yuan Li, Chujie Gao, Yixin Huang, Wenhan Lyu, Yixuan Zhang, Xiner Li, Hanchi Sun, Zhengliang Liu, Yixin Liu, Yijue Wang, Zhikun Zhang, Bertie Vidgen, Bhavya Kailkhura, Caiming Xiong, Chaowei Xiao, Chunyuan Li, Eric P. Xing, Furong Huang, Hao Liu, Heng Ji, Hongyi Wang, Huan Zhang, Huaxiu Yao, Manolis Kellis, Marinka Zitnik, Meng Jiang, Mohit Bansal, James Zou, Jian Pei, Jian Liu, Jianfeng Gao, Jiawei Han, Jieyu Zhao, Jiliang Tang, Jindong Wang, Joaquin Vanschoren, John Mitchell, Kai Shu, Kaidi Xu, Kai-Wei Chang, Lifang He, Lifu Huang, Michael Backes, Neil Zhenqiang Gong, Philip S. Yu, Pin-Yu Chen, Quanquan Gu, Ran Xu, Rex Ying, Shuiwang Ji, Suman Jana, Tianlong Chen, Tianming Liu, Tianyi Zhou, William Yang Wang, Xiang Li, Xiangliang Zhang, Xiao Wang, Xing Xie, Xun Chen, Xuyu Wang, Yan Liu, Yanfang Ye, Yinzhi Cao, Yong Chen, Yue Zhao

Large language models (LLMs) have gained considerable attention for their excellent natural language processing capabilities. Nonetheless, these LLMs present many challenges, particularly in the realm of trustworthiness. This paper introduces TrustLLM, a comprehensive study of trustworthiness in LLMs, including principles for different dimensions of trustworthiness, established benchmark, evaluation, and analysis of trustworthiness for mainstream LLMs, and discussion of open challenges and future directions. Specifically, we first propose a set of principles for trustworthy LLMs that span eight different dimensions. Based on these principles, we further establish a benchmark across six dimensions including truthfulness, safety, fairness, robustness, privacy, and machine ethics. We then present a study evaluating 16 mainstream LLMs in TrustLLM, consisting of over 30 datasets. Our findings firstly show that in general trustworthiness and capability (i.e., functional effectiveness) are positively related. Secondly, our observations reveal that proprietary LLMs generally outperform most open-source counterparts in terms of trustworthiness, raising concerns about the potential risks of widely accessible open-source LLMs. However, a few open-source LLMs come very close to proprietary ones, suggesting that open-source models can achieve high levels of trustworthiness without additional mechanisms like moderator, offering valuable insights for developers in this field. Thirdly, it is important to note that some LLMs may be overly calibrated towards exhibiting trustworthiness, to the extent that they compromise their utility by mistakenly treating benign prompts as harmful and consequently not responding. Besides these observations, we’ve uncovered key insights into the multifaceted trustworthiness in LLMs. We emphasize the importance of ensuring transparency not only in the models themselves but also in the technologies that underpin trustworthiness. We advocate that the establishment of an AI alliance between industry, academia, the open-source community to foster collaboration is imperative to advance the trustworthiness of LLMs.
MLAgentBench: Evaluating Language Agents on Machine Learning Experimentation
Authors: Qian Huang, Jian Vora, Percy Liang, Jure Leskovec

A central aspect of machine learning research is experimentation, the process of designing and running experiments, analyzing the results, and iterating towards some positive outcome (e.g., improving accuracy). Could agents driven by powerful language models perform machine learning experimentation effectively? To answer this question, we introduce MLAgentBench, a suite of 13 tasks ranging from improving model performance on CIFAR-10 to recent research problems like BabyLM. For each task, an agent can perform actions like reading/writing files, executing code, and inspecting outputs. We then construct an agent that can perform ML experimentation based on ReAct framework. We benchmark agents based on Claude v1.0, Claude v2.1, Claude v3 Opus, GPT-4, GPT-4-turbo, Gemini-Pro, and Mixtral and find that a Claude v3 Opus agent is the best in terms of success rate. It can build compelling ML models over many tasks in MLAgentBench with 37.5% average success rate. Our agents also display highly interpretable plans and actions. However, the success rates vary considerably; they span from 100% on well-established older datasets to as low as 0% on recent Kaggle challenges created potentially after the underlying LM was trained. Finally, we identify several key challenges for LM-based agents such as long-term planning and reducing hallucination.
How Universal Polynomial Bases Enhance Spectral Graph Neural Networks: Heterophily, Over-smoothing, and Over-squashing
Authors: Keke Huang, Yu Guang Wang, Ming Li, Pietro Lio

Spectral Graph Neural Networks (GNNs), alternatively known as graph filters, have gained increasing prevalence for heterophily graphs. Optimal graph filters rely on Laplacian eigendecomposition for Fourier transform. In an attempt to avert prohibitive computations, numerous polynomial filters have been proposed. However, polynomials in the majority of these filters are predefined and remain fixed across different graphs, failing to accommodate the varying degrees of heterophily. Addressing this gap, we demystify the intrinsic correlation between the spectral property of desired polynomial bases and the heterophily degrees via thorough theoretical analyses. Subsequently, we develop a novel adaptive heterophily basis wherein the basis vectors mutually form angles reflecting the heterophily degree of the graph. We integrate this heterophily basis with the homophily basis to construct a universal polynomial basis UniBasis, which devises a polynomial filter based graph neural network – UniFilter. It optimizes the convolution and propagation in GNN, thus effectively limiting over-smoothing and alleviating over-squashing. Our extensive experiments, conducted on datasets with a diverse range of heterophily, support the superiority of UniBasis in the universality but also its proficiency in graph explanation.
Conformal Prediction for Deep Classifier via Label Ranking
Authors: Jianguo Huang, Huajun Xi, Linjun Zhang, Huaxiu Yao, Yue Qiu, Hongxin Wei

Conformal prediction is a statistical framework that generates prediction sets containing ground-truth labels with a desired coverage guarantee. The predicted probabilities produced by machine learning models are generally miscalibrated, leading to large prediction sets in conformal prediction. To address this issue, we propose a novel algorithm named $\textit{Sorted Adaptive Prediction Sets}$ (SAPS), which discards all the probability values except for the maximum softmax probability. The key idea behind SAPS is to minimize the dependence of the non-conformity score on the probability values while retaining the uncertainty information. In this manner, SAPS can produce compact prediction sets and communicate instance-wise uncertainty. Extensive experiments validate that SAPS not only lessens the prediction sets but also broadly enhances the conditional coverage rate of prediction sets.
Interaction-based Retrieval-augmented Diffusion Models for Protein-specific 3D Molecule Generation
Authors: Zhilin Huang, Ling Yang, Xiangxin Zhou, Chujun Qin, Yijie Yu, Xiawu Zheng, Zikun Zhou, Wentao Zhang, Yu Wang, Wenming Yang

Generating ligand molecules that bind to specific protein targets via generative models holds substantial promise for advancing structure-based drug design. Existing methods generate molecules from scratch without reference or template ligands, which poses challenges in model optimization and may yield suboptimal outcomes. To address this problem, we propose an innovative interaction-based retrieval-augmented diffusion model named IRDiff to facilitate target-aware molecule generation. IRDiff leverages a curated set of ligand references, i.e., those with desired properties such as high binding affinity, to steer the diffusion model towards synthesizing ligands that satisfy design criteria. Specifically, we utilize a protein-molecule interaction network (PMINet), which is pretrained with binding affinity signals to: (i) retrieve target-aware ligand molecules with high binding affinity to serve as references, and (ii) incorporate essential protein-ligand binding structures for steering molecular diffusion generation with two effective augmentation mechanisms, i.e., retrieval augmentation and self augmentation. Empirical studies on CrossDocked2020 dataset show IRDiff can generate molecules with more realistic 3D structures and achieve state-of-the-art binding affinities towards the protein targets, while maintaining proper molecular properties. The codes and models are available at https://github.com/YangLing0818/IRDiff
Enhancing Size Generalization in Graph Neural Networks through Disentangled Representation Learning
Authors: Zheng Huang, Qihui Yang, Dawei Zhou, Yujun Yan

Although most graph neural networks (GNNs) can operate on graphs of any size, their classification performance often declines on graphs larger than those encountered during training. Existing methods insufficiently address the removal of size information from graph representations, resulting in sub-optimal performance and reliance on backbone models. In response, we propose DISGEN, a novel and model-agnostic framework designed to disentangle size factors from graph representations. DISGEN employs size- and task-invariant augmentations and introduces a decoupling loss that minimizes shared information in hidden representations, with theoretical guarantees for its effectiveness. Our empirical results show that DISGEN outperforms the state-of-the-art models by up to 6% on real-world datasets, underscoring its effectiveness in enhancing the size generalizability of GNNs. Our codes are available at: https://github.com/GraphmindDartmouth/DISGEN.
Triadic-OCD: Asynchronous Online Change Detection with Provable Robustness, Optimality, and Convergence
Authors: Yancheng Huang, Kai Yang, Zelin Zhu, Leian Chen

The primary goal of online change detection (OCD) is to promptly identify changes in the data stream. OCD problem find a wide variety of applications in diverse areas, e.g., security detection in smart grids and intrusion detection in communication networks. Prior research usually assumes precise knowledge of the system parameters. Nevertheless, this presumption often proves unattainable in practical scenarios due to factors such as estimation errors, system updates, etc. This paper aims to take the first attempt to develop a triadic-OCD framework with certifiable robustness, provable optimality, and guaranteed convergence. In addition, the proposed triadic-OCD algorithm can be realized in a fully asynchronous distributed manner, easing the necessity of transmitting the data to a single server. This asynchronous mechanism could also mitigate the straggler issue that faced by traditional synchronous algorithm. Moreover, the non-asymptotic convergence property of Triadic-OCD is theoretically analyzed, and its iteration complexity to achieve an $\epsilon$-optimal point is derived. Extensive experiments have been conducted to elucidate the effectiveness of the proposed method.
An Embodied Generalist Agent in 3D World
Authors: Jiangyong Huang, Silong Yong, Xiaojian Ma, Xiongkun Linghu, Puhao Li, Yan Wang, Qing Li, Song-Chun Zhu, Baoxiong Jia, Siyuan Huang

Leveraging massive knowledge from large language models (LLMs), recent machine learning models show notable successes in general-purpose task solving in diverse domains such as computer vision and robotics. However, several significant challenges remain: (i) most of these models rely on 2D images yet exhibit a limited capacity for 3D input; (ii) these models rarely explore the tasks inherently defined in 3D world, e.g., 3D grounding, embodied reasoning and acting. We argue these limitations significantly hinder current models from performing real-world tasks and approaching general intelligence. To this end, we introduce LEO, an embodied multi-modal generalist agent that excels in perceiving, grounding, reasoning, planning, and acting in the 3D world. LEO is trained with a unified task interface, model architecture, and objective in two stages: (i) 3D vision-language (VL) alignment and (ii) 3D vision-language-action (VLA) instruction tuning. We collect large-scale datasets comprising diverse object-level and scene-level tasks, which require considerable understanding of and interaction with the 3D world. Moreover, we meticulously design an LLM-assisted pipeline to produce high-quality 3D VL data. Through extensive experiments, we demonstrate LEO’s remarkable proficiency across a wide spectrum of tasks, including 3D captioning, question answering, embodied reasoning, navigation and manipulation. Our ablative studies and scaling analyses further provide valuable insights for developing future embodied generalist agents. Code and data are available on project page.
InterLUDE: Interactions between Labeled and Unlabeled Data to Enhance Semi-Supervised Learning
Authors: Zhe Huang, Xiaowei Yu, Dajiang Zhu, Michael C Hughes

Semi-supervised learning (SSL) seeks to enhance task performance by training on both labeled and unlabeled data. Mainstream SSL image classification methods mostly optimize a loss that additively combines a supervised classification objective with a regularization term derived solely from unlabeled data. This formulation often neglects the potential for interaction between labeled and unlabeled images. In this paper, we introduce InterLUDE, a new approach to enhance SSL made of two parts that each benefit from labeled-unlabeled interaction. The first part, embedding fusion, interpolates between labeled and unlabeled embeddings to improve representation learning. The second part is a new loss, grounded in the principle of consistency regularization, that aims to minimize discrepancies in the model’s predictions between labeled versus unlabeled inputs. Experiments on standard closed-set SSL benchmarks and a medical SSL task with an uncurated unlabeled set show clear benefits to our approach. On the STL-10 dataset with only 40 labels, InterLUDE achieves 3.2% error rate, while the best previous method reports 6.3%.
Re-Dock: Towards Flexible and Realistic Molecular Docking with Diffusion Bridge
Authors: Yufei Huang, Odin Zhang, Lirong Wu, Cheng Tan, Haitao Lin, Zhangyang Gao, Siyuan Li, Stan Z. Li

Accurate prediction of protein-ligand binding structures, a task known as molecular docking is crucial for drug design but remains challenging. While deep learning has shown promise, existing methods often depend on holo-protein structures (docked, and not accessible in realistic tasks) or neglect pocket sidechain conformations, leading to limited practical utility and unrealistic conformation predictions. To fill these gaps, we introduce an under-explored task, named flexible docking to predict poses of ligand and pocket sidechains simultaneously and introduce Re-Dock, a novel diffusion bridge generative model extended to geometric manifolds. Specifically, we propose energy-to-geometry mapping inspired by the Newton-Euler equation to co-model the binding energy and conformations for reflecting the energy-constrained docking generative process. Comprehensive experiments on designed benchmark datasets including apo-dock and cross-dock demonstrate our model’s superior effectiveness and efficiency over current methods.
Faster Adaptive Decentralized Learning Algorithms
Authors: Feihu Huang, Jianyu Zhao

Decentralized learning recently has received increasing attention in machine learning due to its advantages in implementation simplicity and system robustness, data privacy. Meanwhile, the adaptive gradient methods show superior performances in many machine learning tasks such as training neural networks. Although some works focus on studying decentralized optimization algorithms with adaptive learning rates, these adaptive decentralized algorithms still suffer from high sample complexity. To fill these gaps, we propose a class of faster adaptive decentralized algorithms (i.e., AdaMDOS and AdaMDOF) for distributed nonconvex stochastic and finite-sum optimization, respectively. Moreover, we provide a solid convergence analysis framework for our methods. In particular, we prove that our AdaMDOS obtains a near-optimal sample complexity of $\tilde{O}(\epsilon^{-3})$ for finding an $\epsilon$-stationary solution of nonconvex stochastic optimization. Meanwhile, our AdaMDOF obtains a near-optimal sample complexity of $O(\sqrt{n}\epsilon^{-2})$ for finding an $\epsilon$-stationary solution of for nonconvex finite-sum optimization, where $n$ denotes the sample size. To the best of our knowledge, our AdaMDOF algorithm is the first adaptive decentralized algorithm for nonconvex finite-sum optimization. Some experimental results demonstrate efficiency of our algorithms.
Adversarially Robust Deep Multi-View Clustering: A Novel Attack and Defense Framework
Authors: Haonan Huang, Guoxu Zhou, Yanghang Zheng, Yuning Qiu, Andong Wang, Qibin Zhao

Deep Multi-view Clustering (DMVC) stands out as a widely adopted technique aiming at enhanced clustering performance by leveraging diverse data sources. However, the critical issue of vulnerability to adversarial attacks is unexplored due to the lack of well-defined attack objectives. To fill this crucial gap, this paper is the first work to investigate the possibility of adversarial attacks on DMVC models. Specifically, we introduce an adversarial attack with Generative Adversarial Networks (GANs) with the aim to maximally change the complementarity and consistency of multiple views, thus leading to wrong clustering. Building upon this adversarial context, in the realm of defense, we propose a novel Adversarially Robust Deep Multi-View Clustering by leveraging adversarial training. Based on the analysis from an information-theoretic perspective, we design an Attack Mitigator that provides a foundation to guarantee the adversarial robustness of our DMVC models. Experiments conducted on multi-view datasets confirmed that our attack framework effectively reduces the clustering performance of the target model. Furthermore, our proposed adversarially robust method is also demonstrated to be an effective defense against such attacks. This work is a pioneer in exploring adversarial threats and advancing both theoretical understanding and practical strategies for robust multi-view clustering. Code is available at https://github.com/libertyhhn/AR-DMVC.
Faster Sampling via Stochastic Gradient Proximal Sampler
Authors: Xunpeng Huang, Difan Zou, Hanze Dong, Yian Ma, Tong Zhang

Stochastic gradients have been widely integrated into Langevin-based methods to improve their scalability and efficiency in solving large-scale sampling problems. However, the proximal sampler, which exhibits much faster convergence than Langevin-based algorithms in the deterministic setting (Lee et al., 2021), has yet to be explored in its stochastic variants. In this paper, we study the Stochastic Proximal Samplers (SPS) for sampling from non-log-concave distributions. We first establish a general framework for implementing stochastic proximal samplers and establish the convergence theory accordingly. We show that the convergence to the target distribution can be guaranteed as long as the second moment of the algorithm trajectory is bounded and restricted Gaussian oracles can be well approximated. We then provide two implementable variants based on Stochastic gradient Langevin dynamics (SGLD) and Metropolis-adjusted Langevin algorithm (MALA), giving rise to SPS-SGLD and SPS-MALA. We further show that SPS-SGLD and SPS-MALA can achieve $\epsilon$-sampling error in total variation (TV) distance within $\tilde{\mathcal{O}}(d\epsilon^{-2})$ and $\tilde{\mathcal{O}}(d^{1/2}\epsilon^{-2})$ gradient complexities, which outperform the best-known result by at least an $\tilde{\mathcal{O}}(d^{1/3})$ factor. This enhancement in performance is corroborated by our empirical studies on synthetic data with various dimensions, demonstrating the efficiency of our proposed algorithm.
Position: Open-Endedness is Essential for Artificial Superhuman Intelligence
Authors: Edward Hughes, Michael D Dennis, Jack Parker-Holder, Feryal Behbahani, Aditi Mavalankar, Yuge Shi, Tom Schaul, Tim Rocktäschel

In recent years there has been a tremendous surge in the general capabilities of AI systems, mainly fuelled by training foundation models on internet-scale data. Nevertheless, the creation of open-ended, ever self-improving AI remains elusive. In this position paper, we argue that the ingredients are now in place to achieve open-endedness in AI systems with respect to a human observer. Furthermore, we claim that such open-endedness is an essential property of any artificial superhuman intelligence (ASI). We begin by providing a concrete formal definition of open-endedness through the lens of novelty and learnability. We then illustrate a path towards ASI via open-ended systems built on top of foundation models, capable of making novel, human-relevant discoveries. We conclude by examining the safety implications of generally-capable open-ended AI. We expect that open-ended foundation models will prove to be an increasingly fertile and safety-critical area of research in the near future.
Position: The Platonic Representation Hypothesis
Authors: Minyoung Huh, Brian Cheung, Tongzhou Wang, Phillip Isola

We argue that representations in AI models, particularly deep networks, are converging. First, we survey many examples of convergence in the literature: over time and across multiple domains, the ways by which different neural networks represent data are becoming more aligned. Next, we demonstrate convergence across data modalities: as vision models and language models get larger, they measure distance between datapoints in a more and more alike way. We hypothesize that this convergence is driving toward a shared statistical model of reality, akin to Plato’s concept of an ideal reality. We term such a representation the platonic representation and discuss several possible selective pressures toward it. Finally, we discuss the implications of these trends, their limitations, and counterexamples to our analysis.