Question: What four evaluation tasks are defined to determine what influences proximity?
Evidence: The goal here being to assess if D2V could effectively replace the related-document function on PubMed, five different document similarity evaluations were designed as seen on figure FIGREF9. These tasks were designed to cover every similarities, from the most general (the context) to the character-level similarity.
Methods ::: Evaluation ::: String length
To assess whether a similar length could lead to convergence of two documents, the size of the query document $D_{x}$ has been compared with the top-close document $C_{x}$ for 10,000 document randomly selected from the TeS after some pre-processing steps (stopwords and spaces were removed from both documents).
Methods ::: Evaluation ::: Words co-occurrences
A matrix of words co-occurrence was constructed on the total corpus from PubMed. Briefly, each document was lowered and tokenized. A matrix was filled with the number of times that two words co-occur in a single document. Then, for 5,000 documents $D_{x}$ from the TeS, all models were queried for the top-close document $C_{x}$. All possible combinations between all words $WD_{x} \in D_{x}$ and all words $WC_{x} \in C_{x}$ (excluding stopwords) were extracted, 500 couples were randomly selected and the number of times each of them was co-occurring was extracted from the matrix. The average value of this list was calculated, reflecting the proximity between D and C regarding their words content. This score was also calculated between each $D_{x}$ and the top-close document $C_{x}$ returned by the pmra algorithm.
Methods ::: Evaluation ::: Stems co-occurrences
The evaluation task explained above was also applied on 10,000 stemmed texts (using the Gensim’s PorterStemmer to only keep word’s roots). The influence of the conjugation form or other suffixes can be assessed.
Methods ::: Evaluation ::: MeSH similarity
It is possible to compare the ability of both pmra and D2V to bring closer articles which were indexed with common labels. To do so, 5,000 documents $D_{x}$ randomly selected from the TeS were sent to both pmra and D2V architectures, and the top-five closer articles $C_{x}$ were extracted. The following rules were then applied to each MeSH found associated with $D_{x}$ for each document $C_{x_i}$ : add 1 to the score if this MeSH term is found in both $D_{x}$ and $C_{x_i}$, add 3 if this MeSH is defined as major topic and add 1 for each qualifier in common between $D_{x}$ and Cxi regarding this particular MeSH term. Then, the mean of these five scores was calculated for both pmra and D2V.
The goal here being to assess if D2V could effectively replace the related-document function on PubMed, five different document similarity evaluations were designed as seen on figure FIGREF9. 
Methods ::: Evaluation ::: String length
To assess whether a similar length could lead to convergence of two documents, the size of the query document $D_{x}$ has been compared with the top-close document $C_{x}$ for 10,000 document randomly selected from the TeS after some pre-processing steps (stopwords and spaces were removed from both documents).
Methods ::: Evaluation ::: Words co-occurrences
A matrix of words co-occurrence was constructed on the total corpus from PubMed. Briefly, each document was lowered and tokenized. A matrix was filled with the number of times that two words co-occur in a single document. Then, for 5,000 documents $D_{x}$ from the TeS, all models were queried for the top-close document $C_{x}$. All possible combinations between all words $WD_{x} \in D_{x}$ and all words $WC_{x} \in C_{x}$ (excluding stopwords) were extracted, 500 couples were randomly selected and the number of times each of them was co-occurring was extracted from the matrix. The average value of this list was calculated, reflecting the proximity between D and C regarding their words content. This score was also calculated between each $D_{x}$ and the top-close document $C_{x}$ returned by the pmra algorithm.
Methods ::: Evaluation ::: Stems co-occurrences
The evaluation task explained above was also applied on 10,000 stemmed texts (using the Gensim’s PorterStemmer to only keep word’s roots). The influence of the conjugation form or other suffixes can be assessed.
Methods ::: Evaluation ::: MeSH similarity
It is possible to compare the ability of both pmra and D2V to bring closer articles which were indexed with common labels. To do so, 5,000 documents $D_{x}$ randomly selected from the TeS were sent to both pmra and D2V architectures, and the top-five closer articles $C_{x}$ were extracted. The following rules were then applied to each MeSH found associated with $D_{x}$ for each document $C_{x_i}$ : add 1 to the score if this MeSH term is found in both $D_{x}$ and $C_{x_i}$, add 3 if this MeSH is defined as major topic and add 1 for each qualifier in common between $D_{x}$ and Cxi regarding this particular MeSH term. Then, the mean of these five scores was calculated for both pmra and D2V.
Answer: The answers are shown as follows:
* String length
* Words co-occurrences
* Stems co-occurrences
* MeSH similarity