PKG: Exclude data test files.
State: closed

```
$ ls -lh dist
total 86552
-rw-r--r--  1 taugspurger  staff    10M Feb  4 14:12 pandas-0.23.0.dev0+218.g3f3b4e0bc-cp36-cp36m-macosx_10_12_x86_64.whl
-rw-r--r--  1 taugspurger  staff    12M Feb  4 14:12 pandas-0.23.0.dev0+218.g3f3b4e0bc.tar.gz
-rw-r--r--  1 taugspurger  staff   7.8M Feb  4 12:18 pandas-0.23.0.dev0+219.g4d77cd8e6-cp36-cp36m-macosx_10_12_x86_64.whl
-rw-r--r--  1 taugspurger  staff   9.5M Feb  4 14:11 pandas-0.23.0.dev0+219.g4d77cd8e6.tar.gz
```

Source: 12M -> 9.5M
Binary: 10M -> 7.8M

Need to do a bit more testing to make sure I didn't break anything.

And need to think about how to test this going forward to ensure we don't write tests that aren't skipped if a data file isn't present.

Closes https://github.com/pandas-dev/pandas/issues/19320
Closes https://github.com/pandas-dev/pandas/issues/21436

Labels:
name: Testing
description: pandas testing functions or related to the test suite
name: Build
description: Library building on various platforms

Comments:
> And need to think about how to test this going forward to ensure we don't write tests that aren't skipped if a data file isn't present.

And likewise we should also make sure to by accident not write tests that are skipped due to an error in the path? (maybe a grep for "Data files not included in pandas distribution." in the travis log could help for that?)
Yes, that’s a good idea. Initially I wrote a decorator to explicitly mark tests using too much data to avoid that issue, but there were too many.

________________________________
From: Joris Van den Bossche <notifications@github.com>
Sent: Sunday, February 4, 2018 3:17:47 PM
To: pandas-dev/pandas
Cc: Tom Augspurger; Author
Subject: Re: [pandas-dev/pandas] [WIP]PKG: Exclude data test files. (#19535)


And need to think about how to test this going forward to ensure we don't write tests that aren't skipped if a data file isn't present.

And likewise we should also make sure to by accident not write tests that are skipped due to an error in the path? (maybe a grep for "Data files not included in pandas distribution." in the travis log could help for that?)

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# [Codecov](https://codecov.io/gh/pandas-dev/pandas/pull/19535?src=pr&el=h1) Report
> :exclamation: No coverage uploaded for pull request base (`master@95427d5`). [Click here to learn what that means](https://docs.codecov.io/docs/error-reference#section-missing-base-commit).
> The diff coverage is `n/a`.

[![Impacted file tree graph](https://codecov.io/gh/pandas-dev/pandas/pull/19535/graphs/tree.svg?height=150&width=650&token=eZ4WkYLtcO&src=pr)](https://codecov.io/gh/pandas-dev/pandas/pull/19535?src=pr&el=tree)

```diff
@@            Coverage Diff            @@
##             master   #19535   +/-   ##
=========================================
  Coverage          ?    91.9%           
=========================================
  Files             ?      153           
  Lines             ?    49544           
  Branches          ?        0           
=========================================
  Hits              ?    45532           
  Misses            ?     4012           
  Partials          ?        0
```

| Flag | Coverage Δ | |
|---|---|---|
| #multiple | `90.3% <ø> (?)` | |
| #single | `41.77% <ø> (?)` | |

| [Impacted Files](https://codecov.io/gh/pandas-dev/pandas/pull/19535?src=pr&el=tree) | Coverage Δ | |
|---|---|---|
| [pandas/util/testing.py](https://codecov.io/gh/pandas-dev/pandas/pull/19535/diff?src=pr&el=tree#diff-cGFuZGFzL3V0aWwvdGVzdGluZy5weQ==) | `84.98% <ø> (ø)` | |
| [pandas/util/\_test\_decorators.py](https://codecov.io/gh/pandas-dev/pandas/pull/19535/diff?src=pr&el=tree#diff-cGFuZGFzL3V0aWwvX3Rlc3RfZGVjb3JhdG9ycy5weQ==) | `92.5% <ø> (ø)` | |

------

[Continue to review full report at Codecov](https://codecov.io/gh/pandas-dev/pandas/pull/19535?src=pr&el=continue).
> **Legend** - [Click here to learn more](https://docs.codecov.io/docs/codecov-delta)
> `Δ = absolute <relative> (impact)`, `ø = not affected`, `? = missing data`
> Powered by [Codecov](https://codecov.io/gh/pandas-dev/pandas/pull/19535?src=pr&el=footer). Last update [95427d5...dbe0c57](https://codecov.io/gh/pandas-dev/pandas/pull/19535?src=pr&el=lastupdated). Read the [comment docs](https://docs.codecov.io/docs/pull-request-comments).

Hello @TomAugspurger! Thanks for updating the PR.

































































 - In the file [`test_foo.py`](https://github.com/pandas-dev/pandas/blob/b5b70c77b182cb27da617c1609db235c6fe8ea0f/test_foo.py), following are the PEP8 issues :

> [Line 3:15](https://github.com/pandas-dev/pandas/blob/b5b70c77b182cb27da617c1609db235c6fe8ea0f/test_foo.py#L3): [W291](https://duckduckgo.com/?q=pep8%20W291) trailing whitespace
> [Line 9:20](https://github.com/pandas-dev/pandas/blob/b5b70c77b182cb27da617c1609db235c6fe8ea0f/test_foo.py#L9): [W291](https://duckduckgo.com/?q=pep8%20W291) trailing whitespace



##### Comment last updated on June 21, 2018 at 14:14 Hours UTC
Seems like I have some work to do on the sql tests.
I have some local failures on master for postgres. Will split to a new issue.

- TestPostgreSQLAlchemy.test_datetime_with_timezone
- TestPostgreSQLAlchemyConn.test_datetime_with_timezone

Checking timings:

master

```
================================================================= slowest 10 test durations =================================================================
0.29s setup    pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy::test_aread_sql
0.23s setup    pandas/tests/io/test_sql.py::TestMySQLAlchemyConn::test_read_procedure
0.22s call     pandas/tests/io/test_sql.py::TestMySQLAlchemy::test_dtype
0.18s setup    pandas/tests/io/test_sql.py::TestMySQLAlchemy::test_aread_sql
0.17s call     pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy::test_schema_support
0.17s setup    pandas/tests/io/test_sql.py::TestMySQLAlchemy::test_read_sql_parameter
0.17s setup    pandas/tests/io/test_sql.py::TestMySQLAlchemyConn::test_to_sql
0.17s setup    pandas/tests/io/test_sql.py::TestMySQLAlchemyConn::test_transactions
0.17s setup    pandas/tests/io/test_sql.py::TestMySQLAlchemyConn::test_default_type_conversion
0.17s setup    pandas/tests/io/test_sql.py::TestMySQLAlchemyConn::test_insert_multivalues

===================================================== 2 failed, 350 passed, 19 skipped in 34.96 seconds =====================================================
```

On my branch things look about the same:

```
===================================================== 2 failed, 350 passed, 19 skipped in 32.88 seconds =====================================================
```

I think with some more work we could speed these up by sharing connections between tests, but that's for a separate issue.
List of files excluded

<details>

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```

</details>

Does anyone know if `MANIFEST.in`, and  `PKG-INFO` are supposed to differ? Looks like I excluded `pandas/conftest.py`, probably want to include that...

edit: nevermind, that diff includes changes, not just added / missing files. Those files are still present.

Some dist sizes:

```
Just sdist, no compiled files


total 22736
-rw-r--r--  1 taugspurger  staff   6.2M Mar 27 13:08 pandas-0.23.0.dev0+690.g766a4800b.tar.gz
-rw-r--r--  1 taugspurger  staff   3.6M Mar 27 13:08 pandas-0.23.0.dev0+713.g762a2d14d.tar.gz

With compiled C files

total 47136
-rw-r--r--  1 taugspurger  staff    12M Mar 27 13:10 pandas-0.23.0.dev0+690.g766a4800b.tar.gz
-rw-r--r--  1 taugspurger  staff   9.9M Mar 27 13:10 pandas-0.23.0.dev0+713.g762a2d14d.tar.gz
```


Hopefully fixed the last failures in the latest commit. On Python2 there was some issue with the `tm.capture_stdout` decorator interfering with pytest's fixture injection. I removed the decorator, and didn't see anything leaking to stdout, even with the `-s` flag.
Updated. Hopefully things still pass.

Do people have thoughts on what release this should target?
23.2 is ok for me (or even 23.1) if u haven’t cut yet
That slightly changes the meaning :)

On Wed, Jun 20, 2018 at 10:55 AM, Joris Van den Bossche <
notifications@github.com> wrote:

> *@jorisvandenbossche* commented on this pull request.
> ------------------------------
>
> In doc/source/whatsnew/v0.23.2.txt
> <https://github.com/pandas-dev/pandas/pull/19535#discussion_r196837494>:
>
> > @@ -37,6 +37,11 @@ Documentation Changes
>  -
>  -
>
> +Build Changes
> +-------------
> +
> +- The source and binary distributions no longer include test files, resulting in smaller download sizes. Tests relying on these files will be skipped when using ``pandas.test()``. (:issue:`19320`)
>
> test files -> "test data files" or "data files for testing"
>
> —
> You are receiving this because you were mentioned.
> Reply to this email directly, view it on GitHub
> <https://github.com/pandas-dev/pandas/pull/19535#pullrequestreview-130465979>,
> or mute the thread
> <https://github.com/notifications/unsubscribe-auth/ABQHInYwadTa-r5CTvUgr2OirWJuCimaks5t-nB8gaJpZM4R4tLh>
> .
>

> That slightly changes the meaning :)

But in the correct sense?

From reading the current whatsnew, I understood that you removed all test `.py` files, so could not run any test (which of course contradicts with the rest of the sentence, but still ..)
Right, the old way sounding like everything was being removed.

I'll push an update once appveyor finishes.

On Wed, Jun 20, 2018 at 11:02 AM, Joris Van den Bossche <
notifications@github.com> wrote:

> That slightly changes the meaning :)
>
> But in the correct sense?
>
> From reading the current whatsnew, I understood that you removed all test
> .py files, so could not run any test (which of course contradicts with
> the rest of the sentence, but still ..)
>
> —
> You are receiving this because you were mentioned.
> Reply to this email directly, view it on GitHub
> <https://github.com/pandas-dev/pandas/pull/19535#issuecomment-398804157>,
> or mute the thread
> <https://github.com/notifications/unsubscribe-auth/ABQHIhVtPjWliqcKG-rbYGqxFOY-kG8Lks5t-nICgaJpZM4R4tLh>
> .
>

lgtm otherwise. merge when ready.
Fixed a merge conflict.