I agree. The norm is Greece is to refer to "Greeks" in Turkey, while we speak about "Muslims" in Thrace, which is obvious double standards. Not all of them are Turks, since Pomaks are NOT Turks, but some of them, I don't know how many, are. The official position of the Greek state, that this is only a religious minority has to be mentioned as well though, for completeness.  

 Having said all that, there is a very basic difference between Greeks in Turkey and Turks in Greece. After the pogroms of 1955 and the general ethnic cleansing policies of the Kemalist state, there are perhaps 1000 Greeks or less left in Turkey, most of them in Istanbul. The Greeks did NOT ethnic cleanse the Turks. Turks are perhaps a hundred times more and they occupy a large portion of two prefectures (Rhodopi and Xanthi). Greece, contrary to acquis communautaire and because of strict adherence to the Lausanne treaty, still lets the mufti perform lots of administrative and judicial duties. This, along with continuous propaganda from the Turkish state (the books in minority schools come directly from Turkey!), has made the minority a time-bomb inside Greece, waiting to explode.