BACKGROUND
feline calicivirus  is a rna virus that occurs worldwide in domestic cats and exotic felids  <cit> .
fcv infections are commonly associated with oral ulcerations and salivation  <cit> .
other clinical syndromes that have been attributed to fcv infection include chronic stomatitis  <cit>  and a limping syndrome .
some years ago, highly virulent systemic fcv infections associated with fatal disease have been reported in several countries, initially in north america  <cit>  and subsequently in europe .
outbreaks of severe fcv infections associated with edema and skin ulcerations have also been described in cats in switzerland .
fcv has also been assigned to the upper respiratory tract disease  complex  .
in addition to fcv, at least four other pathogens have been shown to be associated with this syndrome, including feline herpesvirus type  <dig> , mycoplasma felis, chlamydophila felis and bordetella bronchiseptica .
cats with urtd are commonly presented to veterinary practitioners and show symptoms such as lethargy, pyrexia, anorexia, sneezing, nasal discharge, ocular discharge, conjunctivitis and keratitis  <cit> .
conventional, nested and real-time reverse-transcriptase quantitative polymerase chain reaction  assays have been developed to amplify fcv-specific rna from clinical specimens .
the high genetic variability of fcv can hamper the diagnostic sensitivity of fcv-specific molecular assays  <cit> .
virus isolation has been advocated as an alternative diagnostic tool, but this method is not routinely available  <cit> .
virus isolation is less sensitive to genomic variation, but the method might fail due to virus inactivation during transport, thus resulting in reduced diagnostic sensitivity  <cit> .
fcv vaccines have been shown to be efficacious in protecting cats from the development of severe disease; however, they do not induce sterilizing immunity  <cit> .
moreover, most commercially available vaccines have been based on only a few fcv strains  for many decades.
therefore, the protective potential of fcv vaccines against different circulating fcv isolates has been controversially discussed in recent years .
efforts are made for the identification of new vaccine strains with broader cross-reactivity, the development of bi- or polyvalent vaccines and the inclusion of local fcv isolates .
along these lines, a vaccine containing two novel fcv strains has become commercially available in switzerland   <cit> .
despite the introduction of fcv vaccines several decades ago, cats with fcv-related symptoms are still commonly presented in veterinary practices.
a presumptive clinical diagnosis relies on the presence of fcv-related symptoms  <cit> .
however, clinical signs induced by fcv and other urtd-associated pathogens can overlap and co-infections are common .
molecular assays to detect urtd-associated pathogens in clinical specimens might aid the diagnosis.
because asymptomatic carriers have been reported, results of molecular assays must be interpreted together with clinical presentation.
the aims of this study were to investigate the frequency of fcv in cats suspected fcv infected by veterinary practitioners and in clinically healthy cats in switzerland, and to address potential risk and protective factors for infection in both groups of cats, such as signalment, housing conditions, vaccination, and co-infection with urtd-associated pathogens.
furthermore, the association between a number of different clinical symptoms and fcv infection was assessed.
methods
cats
a total of  <dig> clinically diseased cats with symptoms compatible with fcv infection  and  <dig> clinically healthy cats were enrolled.
the study was part of a large fcv project with the goal to obtain a collection of fcv isolates from symptomatic and asymptomatic cats in switzerland for genetic and serological studies.
both populations were sampled by veterinary surgeons in switzerland between september  <dig> and april  <dig>  the goal was to include samples originating from  <dig> randomly selected veterinary practices in  <dig> different geographic regions  of switzerland .
only one cat per owner  was included.
the veterinarians obtained informed consent from the cat owners.
all samples were taken as part of a diagnostic workup or for routine testing of felv/fiv in healthy cats and all results were provided to the veterinarians and the cat owners; no ethical approval was necessary for this study in compliance with swiss regulations  <cit> .
veterinary practices that were not able to collect a sufficient number of samples within the given time frame  were supported by a second or third veterinary practice within the same canton.
this resulted in the participation of  <dig> veterinary practices in  <dig> cantons and the enrollment of  <dig> cats originating from  <dig> out of  <dig> cantons in switzerland .fig.
<dig> map of switzerland depicting the origin of the  <dig> cats enrolled in the study.
the numbers listed give the number of cats per canton: a fcv-suspect/healthy cats; b fcv-positive/all cats.
basel-landschaft and basel-stadt are listed as a single canton.
maps were produced using qgis  <cit>
the participating veterinarians were provided with a list of the following fcv-related clinical signs: sneezing, nasal and/or ocular discharge, conjunctivitis, caudal stomatitis, chronic stomatitis and/or gingivitis, lingual and/or oral ulceration, pneumonia, shifting lameness, or a combination of fever, cutaneous edema and dermal ulceration of the face and/or limbs.
the clinical signs were selected based on the guidelines on feline calicivirus infection by the european advisory board on cat diseases  and a recent publication  <cit> .
the written instructions contained illustrations on how to recognize fcv-associated clinical signs, as described above, and how to collect and ship the samples.
inclusion criteria for clinically healthy cats were the absence of any clinical signs based on anamnesis and clinical examination of the participating veterinarian.
cats that had been vaccinated against fcv, fhv- <dig> or c. felis within 21 days prior to the sample collection or that were younger than eight weeks were excluded.
to record demographic data for each enrolled animal, the veterinarians filled out a questionnaire during the cat’s visit at the clinic.
to avoid interviewer bias, the participating veterinarians received written instructions on how to fill in the questionnaire.
a similar questionnaire has been used in earlier studies  <cit> .
the questionnaire was comprised of different sections on geographic data , demographic data , husbandry data , data on vaccine history according to the clinical record and vaccination card , date of the last felv vaccination), retrovirus status  test results and date of testing), data on medical history  and results of the clinical examination.
sample collection and analysis
an oropharyngeal cytobrush, as well as a nasal and a conjunctival cotton swab were collected from each cat.
sample collection material was provided by the investigators.
conjunctival swabs were collected prior to any diagnostic treatment, such as fluorescein application.
each cytobrush and swab was placed in a sterile safe-lock eppendorf tube containing 300 μl of sterile viral transport medium.
the medium consisted of 200 ml bi-distilled sterile water, 4 ml hepes-buffer 1 m , 25 ml dulbecco’s mem 10x , 25 ml heat inactivated fetal calf serum , 3 ml  <dig> × antibiotic-antimycotic  and 4 ml sodium hydrogen bicarbonate  <dig>  %  at a ph of  <dig> that was adjusted using 1 m sodium hydroxide .
samples were stored at 4 °c prior to shipping to the laboratory by priority mail.
all samples were processed within 96 h after collection.
sample processing and total nucleic acid  extraction
upon arrival, the cytobrushes and swabs were incubated at 40 °c for 10 min.
the cytobrushes and swabs were then turned upside down and centrifuged for 1 min at  <dig> × g. the samples from each patient  were pooled and subsequently divided as follows: two aliquots of 200 μl were used for tna extractions and 400 μl were used for virus isolation.
tna extraction was performed using 200 μl of sample or cell culture supernatant with the magna pure lc  using the magna pure lc total nucleic acid isolation kit  following the manufacturer’s instructions.
in each batch of extraction, a negative control that consisted of 200 μl of pbs was used to monitor for cross-contamination.
tna was stored at -20 °c until qpcr analysis.
virus isolation
for virus isolation, 400 μl of each sample were filtered , incubated on 80 % confluent crandell-rees feline kidney cells in 24-well plates  and cultured using rpmi  <dig> medium  supplemented with 10 % heat inactivated fetal calf serum , 2 mm l-glutamin  and 1x antibiotic-antimycotic .
for each sample culture, a negative medium-only control was run in parallel.
the samples were incubated on cells for two hours before 300 μl of complete medium were added.
the cells were fed daily and evaluated for the presence of a cytopathic effect.
as soon as a cytopathic effect became visible or after a maximum of seven days, the supernatants were collected for tna extraction and for storage at −80 °c until further use.
if the tna extraction could not be performed on the day of collection, 300 μl lysis buffer  were added to the 200 μl of supernatant and the mixture was stored at −20 °c as recommended by the manufacturer.
tna was extracted from the cell culture supernatants after a maximum of 72 h of storage.
real-time qpcr and rt-qpcr assays
all real-time qpcr assays in the current study were run with 5 μl tna in an end volume of 25 μl.
positive and negative controls were run with each rt-qpcr and qpcr assay.
all oligonucleotides were synthetized by microsynth ag , and all qpcr assays were run on an abi 7500fast real-time pcr system .
for quantitative analyses, ct values were used.
for fcv, two previously described fcv real-time taqman rt-qpcr assays were used  <cit> .
the assays were optimized prior to the start of the experiment.
the fcv rt-qpcr s <dig>  <cit>  reaction contained  <dig> x one step rt-qpcr mastermix low rox ,  <dig> nm forward primer,  <dig> nm reverse primer,  <dig> nm probe, 5 μl nuclease-free water  and  <dig>  μl euroscript .
the temperature profile was 30 min at 48 °c, followed by 10 min at 95 °c and 45 cycles of 15 s at 95 °c, followed by 1 min at 60 °c.
the fcv rt-qpcr s <dig>  <cit>  reaction contained  <dig>  μl superscript iii/rt platinum taq mix ,  <dig> nm forward primer,  <dig> nm reverse primer,  <dig> nm probe,  <dig>  μl  <dig> x rox dye,  <dig>  μl  <dig> u/μl rrnasin® rnase inhibitor  or rnasin® plus rnase inhibitor  and  <dig>  μl nuclease-free water .
the temperature profile was 30 min at 50 °c, followed by 2 min at 95 °c and 45 cycles of 20 s at 95 °c, followed by 45 s at 60 °c.
each sample  was analyzed with both rt-qpcr assays .
all cats that tested positive in at least one of the four rt-qpcr runs were categorized as fcv-positive .
tna from swab/cytobrush from each cat was also tested for fhv- <dig>  <cit> , c. felis  <cit> , b. bronchiseptica  <cit>  and m. felis  <cit>  by qpcr using previously described methods.
moreover, the samples were also tested for felv  <cit>  and fiv viral rna  <cit>  by rt-qpcr because both infections can lead to increased susceptibility to other infections and can be associated with inflammatory oral disease.
three samples from fcv-suspect cats could not be analyzed for b. bronchiseptica, m. felis, felv and fiv because of a lack of material.
statistical analysis
statistical analysis was performed utilizing the freely available software program r version  <dig> .
<dig>  <cit> .
separately for the fcv-suspect and clinically healthy cats, descriptive statistics with frequencies for male and female cats, medians with 95 % confidence interval  for age and proportions of the dichotomous variables with 95 % ci based on the binomial distribution are presented.
regression models were applied to assess if the predictors  were significantly associated with the outcome fcv infection.
univariable regressions, with the outcome fcv were performed and odds ratios with 95 % wald confidence intervals are shown.
due to the presence of missing values which reduced the number of complete cases  for fcv-suspect animals to  <dig> and for clinically healthy animals to  <dig>  missing values were imputed with the package missforest  <cit> , separately for the fcv-suspect and clinically healthy cats.
imputation was done iteratively based on a random forest approach.
utilizing the imputed data sets, multivariable logistic regressions were performed with the package mass  <cit> .
models were built following two different approaches.
first, all variables with a p-value <  <dig> in univariable regression were considered in different models, including interaction terms.
model selection was based on aic  with lower values of at least  <dig> considered indicative of a better model fit.
in case of between model differences smaller than  <dig>  the most parsimonious model was chosen.
second, a stepwise regression approach in both directions was applied including all variables, irrespective of their p-values in the univariate approach and interaction terms.
diagnostic plots were assessed for the robustness of the final models.
results are presented as odds ratios and 95 % wald confidence intervals.
fcv loads in swab/cytobrush samples were compared between two groups using the mann–whitney u-test  and the graph-pad prism version  <dig>  .
maps were produced using qgis geographic information system   <cit> .
canton boundaries were provided by the swiss federal office of topography.
RESULTS
summary statistics for all variables used in the statistical analysis for fcv-suspect and healthy cats are presented in table  <dig>  this includes the pcr results for urtd-associated pathogens.
fcv infection was detected in 45 %  of the fcv-suspect cats and in 8 %  of the healthy cats.
among the  <dig> fcv-suspect and  <dig> healthy cats, 40 %  and 14 %  respectively, were co-infected with any of the tested urtd-associated pathogens.
in summary, among the co-infected fcv-suspect cats, 77 % were positive for two, 21 % for three and 3 % for four pathogens.
among the co-infected healthy cats, 93 % were positive for two and 7 % for three pathogens.
for details see additional file  <dig>  in 26 %  of the fcv-suspect cats, none of the tested urtd-associated pathogens were detected.
five cats  tested positive either for felv or for fiv.
because of the low prevalence, fiv and felv infections were not considered in the statistical analysis.
approximately two thirds of the cats lived in a group with other cats ; details of the numbers of cats per group and the frequency of fcv infection are shown in additional file  <dig>  the majority of the fcv-suspect  and healthy cats  were vaccinated; of these 92 % of the fcv-suspect  and the healthy cats  had received a primary immunization defined as a minimum of two vaccinations two to six weeks apart with the same vaccine strain .
in both groups of cats, the vaccine strain most frequently used for primary immunization was fcv f <dig>  followed by fcv g1/ <dig> .
because of the small number of cats vaccinated with a vaccine strain other than f <dig>  vaccine strain was not considered in the statistical analysis.table  <dig> characteristics of the  <dig> fcv-suspect and the  <dig> healthy cats.
the cats originated from  <dig> different cantons in switzerland
breedbc
contact with dog with kennel coughc
primary immunizationd
fcv positivee
m. felis positivee
fhv- <dig> positivee
c. felis positivee
b. bronchiseptica positivee
aci = confidence interval.
bonly breeds with > <dig> cats in the study are listed.
cdue to low numbers, these variables were not considered in the statistical analysis.
dprimary immunization was defined as two subsequent vaccinations within  <dig> to 6 weeks with the same vaccine strain.
epositive by real-time qpcr/rt-qpcr
based on univariable regression models, in fcv-suspect cats intact reproductive status, living in a group of at least four cats, co-infection with m. felis and both vaccination and primary immunization were found to be significantly associated with fcv infection .
the former three predictors were found to be risk factors by approximately doubling the chance of a fcv infection .
being vaccinated at all or having received a primary immunization were found to be protective factors by reducing the chance of a fcv infection by approximately 50 %.
in contrast, amongst the clinically healthy cats, the vaccination predictors were not significantly associated with fcv infection .
similarly to the fcv-suspect cats, intact reproductive status and living in a group of at least four cats were found to be risk factors, albeit with higher odds ratios and considerably larger confidence intervals than in the fcv-suspect cats.
details on missing values, univariable regressions with complete case and imputed data sets are presented in additional file  <dig>  whereas p-values obtained with the original data and the imputed data are similar, p-values from complete case analyses differ slightly.table  <dig> results of the univariable approach for the  <dig> fcv-suspect and the  <dig> healthy cats
<dig>
<dig>
<dig>
<dig>
<dig>
<dig>
<dig>
<dig>
<dig>
<dig>
<dig>
<dig>
< <dig>
<dig>
<dig>
<dig>
<dig>
<dig>
<dig>
<dig>
primary immunizationb
<dig>
<dig>
<dig>
<dig>
m. felis positived
<dig>
<dig>
<dig>
<dig>
fhv- <dig> positived
c. felis positived
b. bronchiseptica positived
parameters significantly associated with fcv infection are shown in bold.
odds ratios and confidence intervals are given for p <  <dig>
aci = confidence interval .
bprimary immunization was defined as two subsequent vaccinations within  <dig> to 6 weeks with the same vaccine strain.
cnot applicable.
dpositive by real-time qpcr/rt-qpcr
based on multivariable regression models, in fcv-suspect animals only intact reproductive status, living in a group of at least four cats and co-infection with m. felis remained in the final model with all odds ratios being reduced by at least 10 % compared to the univariable results .
based on the stepwise regression with all predictors, outdoor access was additionally found to be a risk factor for fcv infection .
none of the variables describing vaccination were found to be significant in the multivariable models.
regarding the clinically healthy cats, intact reproductive status and living in a group of at least four cats remained in the final model with higher odds ratios and larger confidence intervals than in the fcv-suspect cats.
stepwise regression was not possible for this group of cats due to lack of convergence.table  <dig> results from multivariable regressions for the  <dig> fcv-suspect and the  <dig> healthy cats
parametera
m. felis positivec
only parameters significantly associated with fcv infection are shown
abased on the stepwise regression with all predictors, additionally outdoor access was found to be a risk factor for fcv infection.
bci = confidence interval.
cpositive by real-time qpcr
the clinical signs in the  <dig> cats chosen by the veterinary practitioners because of fcv-related symptoms are shown in table  <dig>  in approximately half of the fcv-suspect cats, gingivitis or classical signs of urtd, such as nasal discharge, ocular discharge, conjunctivitis and sneezing were present.
approximately one third of the cats exhibited stomatitis or caudal stomatitis, about 10 % demonstrated oral or lingual ulceration and only a few were found with swollen joints, lameness, skin ulcerations or cutaneous edema.
gingivitis, stomatitis, caudal stomatitis, salivation and oral and lingual ulcerations were significantly associated with fcv infection .
in contrast, nasal and ocular discharge and sneezing were significantly less common in the fcv pcr-positive than in the fcv pcr-negative cats.
when the fcv load in the sample material was compared between fcv-positive diseased and fcv-positive healthy cats, the fcv loads were higher in the diseased cats, although statistical significance was not reached .table  <dig> association of clinical signs with fcv infection in the  <dig> fcv-suspect cats
<dig>
<dig>
<dig>
<dig>
<dig>
<dig>
<dig>
<dig>
<dig>
<dig>
<dig>
<dig>
<dig>
<dig>
<dig>
<dig>
<dig>
<dig>
<dig>
<dig>
<dig>
<dig>
<dig>
<dig>
<dig>
<dig>
<dig>
significant associations are shown in bold
aci = confidence interval
fig.
<dig> comparison of fcv loads in the swab/cytobrush samples from fcv-suspect cats and the healthy cats.
loads are given as ct values from the real-time rt-qpcr s <dig> assay and are depicted as boxplots.
a low ct value corresponds to a high load.
of note, the measurements are semi-quantitative because of the collection procedure
discussion
the present study investigated fcv infection in  <dig> diseased cats judged suspicious for fcv infection by private veterinarians and in  <dig> clinically healthy cats, all sampled in different regions of switzerland.
fcv infection was detected in 45 %  of the cats with fcv-related symptoms.
this relatively low percentage of pcr-positive symptomatic cats is in agreement with the prevalence of fcv infection in cats in uk with respiratory disease   <cit>  and in cats in germany with chronic gingivostomatitis   <cit> .
in the present study, cats were judged as fcv-suspect by the veterinary practitioners based on written instructions that listed fcv-related symptoms as described in the literature  <cit> .
interestingly, cats suffering from gingivitis and urtd-related symptoms were most commonly selected by the veterinarians.
however, only gingivitis, stomatitis, caudal stomatitis, salivation and oral and lingual ulcerations were significantly associated with fcv infection but not the classical signs of urtd, such as sneezing, nasal and ocular discharge.
in contrast, sneezing, nasal and ocular discharge were significantly less common in the fcv-positive cats when compared to the fcv-negative cats.
this finding contrasts earlier studies where fcv infection was significantly associated with feline respiratory tract disease  <cit> .
however, in accordance with our results, bannasch and co-workers found that among the five pathogens associated with urtd examined , the most important contributors to urtd were fhv- <dig>  mycoplasma species and c. felis  <cit> .
acute fcv is known to induce vesicular disease, which typically manifests as oral and lingual ulcerations  <cit> .
ocular and nasal discharge is only rarely reported after experimental fcv infection  <cit> .
chronic fcv infection has been strongly associated with the presence of gingivostomatitis  <cit> , although the exact pathogenesis of this disease is still unknown.
our data suggest that for a clinical diagnosis of fcv infection, the fcv-related symptoms should be reconsidered and more stringently defined and the diagnosis confirmed by molecular testing.
it needs to be noted that the relatively low detection rate of fcv in the fcv-suspect cats could also be attributed to a limited diagnostic sensitivity of the applied diagnostic assays.
in the current study, the criterion of being fcv-positive was based on the presence of at least one positive out of four real-time rt-qpcr runs .
this approach was chosen to maximize diagnostic sensitivity.
however, the remarkably high genetic variability of fcv  <cit>  increases the likelihood of potential mismatches in the primer or probe binding sites, thus leading to the possibility of failed real-time pcr amplification.
interestingly, 26 % of the fcv-suspect cats tested negative for all urtd-associated pathogens.
cats with a non-infectious etiology for urtd  could account for some of these cases.
cats with non-infectious urtd are clinically indistinguishable from cats with urtd caused by infectious agents.
additionally, the detection of the urtd-associated pathogens could have failed due to sample degradation during the transport from the veterinary practices to the laboratory  <cit> .
to avoid or minimize this effect, the samples in the present study were analyzed within 96 h of collection.
finally, the diagnostic sensitivity of the pcr assays could have been hampered by genetic alterations of the pathogens within the target sequence of the applied pcr assays.
however, in contrast to rna viruses such as fcv, a high genetic variability is not necessarily expected for fhv- <dig>  c. felis, m. felis and b. bronchiseptica.
approximately 8–9 % of the healthy cats in the present study tested pcr-positive for fhv- <dig> and fcv.
this proportion is lower for fcv than reported in earlier studies in the uk   <cit>  and in germany   <cit> .
as previously reported  <cit> , it is important to remember that some cats, although clinically healthy, are shedders of infectious pathogens related to urtd.
in the present study, risk factor analysis was performed with univariable and multivariable regression models.
the latter were performed with imputed data sets due to missing data.
the selected multivariable regression approach offers, in contrast to univariable approaches, the possibility to adjust for confounding.
inevitably however, it remains possible that not all relevant confounders were recorded.
missing values leading subsequently to different sample sizes of models with different variables, preclude the possibility to compare the model fit: thus data sets with imputed variables for the missing values were generated.
although resulting p-values obtained with the original and the imputed data sets were similar in univariable analysis, any imputation may potentially include bias.
two model-building approaches were performed for the fcv-suspect cats  to assure robustness of the final models.
although found to be significant protective factors in univariable models, statistical association for vaccination status and primary immunization vanished in multivariable analysis.
one reason might be that the predictors “vaccination status” and “primary immunization” with the categories “yes” and “no”  comprised a number of different vaccines, vaccinations schemes and time elapsed since vaccination, thus, potentially being too heterogeneous to actually show a statistical association.
in addition, fcv vaccines do not induce sterilizing immunity, although they have been shown to reduce the severity of clinical signs  <cit> .
therefore, vaccine protection cannot be solely judged by the pcr status of a cat.
furthermore, a cross-sectional study is rather limited in assessing causal relationships, especially since in a cross-sectional approach only prevalence can be estimated whereas incidence would be more relevant.
an intact reproductive status, living in a group with at least four cats and co-infection with m. felis were found to be risk factors for fcv infection.
all of these three factors approximately doubled the chance of finding a fcv infection.
a number of interaction terms, including interaction between groups of at least four cats and m. felis infection or between vaccination and intact reproductive status, were tested for potential association but none was found to be statistically significant.
an association of fcv with intact reproductive status has been reported in an earlier study  <cit> .
although no clear explanation can be given for this association, possible reasons postulated earlier include hormonal effects, which might alter the replication and the persistence of the virus, and more social or aggressive interactions between the intact animals  <cit> .
the association of fcv infection with housing in large groups of cats was reported in previous studies  <cit> .
cats kept in large groups are exposed to a higher infectious pressure compared with cats living in smaller groups.
the high plasticity of the fcv genome and positive selection by the immune system support genomic mutations and lead to a progressive evolution of fcv variants in cat groups with cyclic reinfection of previously immune cats  <cit> .
in addition, strict quarantine measures and excellent hygiene can be more challenging to guarantee in large groups of cats, thereby favoring fcv infections  <cit> .
breeders and other cat owners should be educated about the benefits of housing cats in small groups.
a reduced group size does not only reduce the risk of infection related to urtd in cats but also the risk of other feline infections and the development of feline infectious peritonitis  <cit> .
no clear explanation can be given for the association of fcv infection with m. felis co-infection.
possible reasons could be a similar transmission route, pathogenesis or similar risk factors for infection.
fcv and fhv- <dig> infection have often been reported to occur concurrently, and cats co-infected with fcv and fhv- <dig> had a high risk of developing urtd  <cit> .
however, no association between fcv infection and co-infections with the other tested pathogens fhv- <dig>  c. felis and b. bronchiseptica were found in the present study.
the different housing categories including private home, farm, breeder, feral cat and cattery were recorded in this study, but since the vast majority of cats was kept in private homes, it was not possible to disentangle the effect of different housing categories.
the variable breed was dichotomized into pedigree and non-pedigree cats for statistical analysis because the number of cats per breed was small.
the absence of a statistical association does therefore not preclude any potential association between specific breeds and fcv infection.
for example out of  <dig> fcv-suspect maine coons,  <dig> were found to be fcv-infected and suffer from gingivostomatitis.
it is known that purebreds, such as the maine coons, are predisposed to develop early or severe periodontal disease  <cit> , but no association with fcv infection has been described thus far.
it should be noted however that  <dig> of the fcv-positive main coons were housed in groups .
in the present study, 76 % and 80 % of the fcv-suspect and healthy cats, respectively, were vaccinated against fcv and fhv- <dig> .
this vaccination rate seems higher than the rate estimated for switzerland in  <dig> according to the number of sold vaccine doses   <cit> .
thus, according to our numbers, the proportion of vaccinated cats would be sufficiently high to provide some protection for the population  within the sampled population as opposed to protection of the vaccinated host only  <cit> .
however, the present study is based on preselected populations of cats and some of the cats had not received a proper primary immunization or were lacking the necessary booster vaccinations, leaving some doubts about the actual level of protection.
CONCLUSIONS
the present study assessed fcv infection in cats judged fcv-suspect by veterinary practitioners and in clinically healthy cats in switzerland.
fcv infection was detected in less than half of the fcv-suspect cats.
within this group of cats, infection was significantly associated with gingivitis, stomatitis, caudal stomatitis, oral and lingual ulcerations, but not with classical signs of urtd, such as sneezing, nasal and ocular discharge.
these results suggest that the fcv-related symptoms should be critically reassessed and probably more stringently defined.
fcv infection was also detected in some healthy cats; this observation underlines the importance of asymptomatic shedders in fcv epidemiology.
housing in large groups of cats was among the risk factors for fcv infection.
thus, if problems with fcv are encountered in multi-cat environments, reduction of group size in addition to the generally recommended vaccination and quarantine measures for incoming and sick cats are advocated.
additional files
additional file 1:
number of cats pcr-positive for urtd-associated pathogens and co-infections thereof.
the  <dig> fcv-suspect and  <dig> healthy cats originated from  <dig> different cantons in switzerland.
additional file 2:
frequency of fcv-positive and fcv-negative cats according to number of cats housed per group.
a)  <dig> fcv-suspect cats; b)  <dig> healthy cats.
fcv-pos./neg.
= fcv-positive/negative in fcv real-time rt-pcr.
number of cats = 1: single cats.
the numbers in the bars represent the absolute numbers of cats in the respective category.
additional file 3:
details on missing values, univariable regressions with complete case and imputed data sets.
abbreviations
b. bronchisepticabordetella bronchiseptica
c. felischlamydophila felis
ciconfidence interval
fcvfeline calicivirus
felvfeline leukemia virus
fhv-1feline herpesvirus-1
fivfeline immunodeficiency virus
m. felismycoplasma felis
qpcrquantitative polymerase chain reaction
rt-qpcrreverse-transcriptase qpcr
tnatotal nucleic acid
urtdupper respiratory tract disease
alice berger and barbara willi contributed equally to this work.
competing interests
the authors declare that they have no competing interests.
authors’ contributions
hl and rhl conceived the study.
bw, fsb and rhl participated in the design and coordination of the study.
ab carried out the sample and data collection and part of the laboratory work.
bw and fsb were responsible for clinical aspects of the study.
mlm was responsible for all laboratory aspects.
rhl, sh, ad and ab performed the statistical analysis.
bw, rhl and ab drafted the manuscript.
mlm, fsb, sh and hl edited the manuscript.
all authors read and approved the final manuscript.

 feline calicivirus is a rna virus that occurs worldwide in domestic cats and exotic felids. fcv infections are commonly associated with oral ulcerations and salivation. other clinical syndromes that have been attributed to fcv infection include chronic stomatitis and a limping syndrome. some years ago, highly virulent systemic fcv infections associated with fatal disease have been reported in several countries, initially in north america and subsequently in europe. outbreaks of severe fcv infections associated with edema and skin ulcerations have also been described in cats in switzerland. fcv has also been assigned to the upper respiratory tract disease complex. in addition to fcv, at least four other pathogens have been shown to be associated with this syndrome, including feline herpesvirus type, mycoplasma felis, chlamydophila felis and bordetella bronchiseptica. cats with urtd are commonly presented to veterinary practitioners and show symptoms such as lethargy, pyrexia, anorexia, sneezing, nasal discharge, ocular discharge, conjunctivitis and keratitis. conventional, nested and real-time reverse-transcriptase quantitative polymerase chain reaction assays have been developed to amplify fcv-specific rna from clinical specimens. the high genetic variability of fcv can hamper the diagnostic sensitivity of fcv-specific molecular assays. virus isolation has been advocated as an alternative diagnostic tool, but this method is not routinely available. virus isolation is less sensitive to genomic variation, but the method might fail due to virus inactivation during transport, thus resulting in reduced diagnostic sensitivity. fcv vaccines have been shown to be efficacious in protecting cats from the development of severe disease; however, they do not induce sterilizing immunity. moreover, most commercially available vaccines have been based on only a few fcv strains for many decades. therefore, the protective potential of fcv vaccines against different circulating fcv isolates has been controversially discussed in recent years. efforts are made for the identification of new vaccine strains with broader cross-reactivity, the development of bi- or polyvalent vaccines and the inclusion of local fcv isolates. along these lines, a vaccine containing two novel fcv strains has become commercially available in switzerland. despite the introduction of fcv vaccines several decades ago, cats with fcv-related symptoms are still commonly presented in veterinary practices. a presumptive clinical diagnosis relies on the presence of fcv-related symptoms. however, clinical signs induced by fcv and other urtd-associated pathogens can overlap and co-infections are common. molecular assays to detect urtd-associated pathogens in clinical specimens might aid the diagnosis. because asymptomatic carriers have been reported, results of molecular assays must be interpreted together with clinical presentation. the aims of this study were to investigate the frequency of fcv in cats suspected fcv infected by veterinary practitioners and in clinically healthy cats in switzerland, and to address potential risk and protective factors for infection in both groups of cats, such as signalment, housing conditions, vaccination, and co-infection with urtd-associated pathogens. furthermore, the association between a number of different clinical symptoms and fcv infection was assessed. methods cats a total of clinically diseased cats with symptoms compatible with fcv infection and clinically healthy cats were enrolled. the study was part of a large fcv project with the goal to obtain a collection of fcv isolates from symptomatic and asymptomatic cats in switzerland for genetic and serological studies. both populations were sampled by veterinary surgeons in switzerland between september and april the goal was to include samples originating from randomly selected veterinary practices in different geographic regions of switzerland. only one cat per owner was included. the veterinarians obtained informed consent from the cat owners. all samples were taken as part of a diagnostic workup or for routine testing of felv/fiv in healthy cats and all results were provided to the veterinarians and the cat owners; no ethical approval was necessary for this study in compliance with swiss regulations. veterinary practices that were not able to collect a sufficient number of samples within the given time frame were supported by a second or third veterinary practice within the same canton. this resulted in the participation of veterinary practices in cantons and the enrollment of cats originating from out of cantons in switzerland.fig. map of switzerland depicting the origin of the cats enrolled in the study. the numbers listed give the number of cats per canton: a fcv-suspect/healthy cats; b fcv-positive/all cats. basel-landschaft and basel-stadt are listed as a single canton. maps were produced using qgis the participating veterinarians were provided with a list of the following fcv-related clinical signs: sneezing, nasal and/or ocular discharge, conjunctivitis, caudal stomatitis, chronic stomatitis and/or gingivitis, lingual and/or oral ulceration, pneumonia, shifting lameness, or a combination of fever, cutaneous edema and dermal ulceration of the face and/or limbs. the clinical signs were selected based on the guidelines on feline calicivirus infection by the european advisory board on cat diseases and a recent publication. the written instructions contained illustrations on how to recognize fcv-associated clinical signs, as described above, and how to collect and ship the samples. inclusion criteria for clinically healthy cats were the absence of any clinical signs based on anamnesis and clinical examination of the participating veterinarian. cats that had been vaccinated against fcv, fhv- or c. felis within 21 days prior to the sample collection or that were younger than eight weeks were excluded. to record demographic data for each enrolled animal, the veterinarians filled out a questionnaire during the cat’s visit at the clinic. to avoid interviewer bias, the participating veterinarians received written instructions on how to fill in the questionnaire. a similar questionnaire has been used in earlier studies. the questionnaire was comprised of different sections on geographic data, demographic data, husbandry data, data on vaccine history according to the clinical record and vaccination card, date of the last felv vaccination), retrovirus status test results and date of testing), data on medical history and results of the clinical examination. sample collection and analysis an oropharyngeal cytobrush, as well as a nasal and a conjunctival cotton swab were collected from each cat. sample collection material was provided by the investigators. conjunctival swabs were collected prior to any diagnostic treatment, such as fluorescein application. each cytobrush and swab was placed in a sterile safe-lock eppendorf tube containing 300 μl of sterile viral transport medium. the medium consisted of 200 ml bi-distilled sterile water, 4 ml hepes-buffer 1 m, 25 ml dulbecco’s mem 10x, 25 ml heat inactivated fetal calf serum, 3 ml × antibiotic-antimycotic and 4 ml sodium hydrogen bicarbonate  % at a ph of that was adjusted using 1 m sodium hydroxide. samples were stored at 4 °c prior to shipping to the laboratory by priority mail. all samples were processed within 96 h after collection. sample processing and total nucleic acid extraction upon arrival, the cytobrushes and swabs were incubated at 40 °c for 10 min. the cytobrushes and swabs were then turned upside down and centrifuged for 1 min at × g. the samples from each patient were pooled and subsequently divided as follows: two aliquots of 200 μl were used for tna extractions and 400 μl were used for virus isolation. tna extraction was performed using 200 μl of sample or cell culture supernatant with the magna pure lc using the magna pure lc total nucleic acid isolation kit following the manufacturer’s instructions. in each batch of extraction, a negative control that consisted of 200 μl of pbs was used to monitor for cross-contamination. tna was stored at -20 °c until qpcr analysis. virus isolation for virus isolation, 400 μl of each sample were filtered, incubated on 80 % confluent crandell-rees feline kidney cells in 24-well plates and cultured using rpmi medium supplemented with 10 % heat inactivated fetal calf serum, 2 mm l-glutamin and 1x antibiotic-antimycotic. for each sample culture, a negative medium-only control was run in parallel. the samples were incubated on cells for two hours before 300 μl of complete medium were added. the cells were fed daily and evaluated for the presence of a cytopathic effect. as soon as a cytopathic effect became visible or after a maximum of seven days, the supernatants were collected for tna extraction and for storage at −80 °c until further use. if the tna extraction could not be performed on the day of collection, 300 μl lysis buffer were added to the 200 μl of supernatant and the mixture was stored at −20 °c as recommended by the manufacturer. tna was extracted from the cell culture supernatants after a maximum of 72 h of storage. real-time qpcr and rt-qpcr assays all real-time qpcr assays in the current study were run with 5 μl tna in an end volume of 25 μl. positive and negative controls were run with each rt-qpcr and qpcr assay. all oligonucleotides were synthetized by microsynth ag, and all qpcr assays were run on an abi 7500fast real-time pcr system. for quantitative analyses, ct values were used. for fcv, two previously described fcv real-time taqman rt-qpcr assays were used. the assays were optimized prior to the start of the experiment. the fcv rt-qpcr s reaction contained x one step rt-qpcr mastermix low rox, nm forward primer, nm reverse primer, nm probe, 5 μl nuclease-free water and  μl euroscript. the temperature profile was 30 min at 48 °c, followed by 10 min at 95 °c and 45 cycles of 15 s at 95 °c, followed by 1 min at 60 °c. the fcv rt-qpcr s reaction contained  μl superscript iii/rt platinum taq mix, nm forward primer, nm reverse primer, nm probe,  μl x rox dye,  μl u/μl rrnasin® rnase inhibitor or rnasin® plus rnase inhibitor and  μl nuclease-free water. the temperature profile was 30 min at 50 °c, followed by 2 min at 95 °c and 45 cycles of 20 s at 95 °c, followed by 45 s at 60 °c. each sample was analyzed with both rt-qpcr assays. all cats that tested positive in at least one of the four rt-qpcr runs were categorized as fcv-positive. tna from swab/cytobrush from each cat was also tested for fhv-, c. felis, b. bronchiseptica and m. felis by qpcr using previously described methods. moreover, the samples were also tested for felv and fiv viral rna by rt-qpcr because both infections can lead to increased susceptibility to other infections and can be associated with inflammatory oral disease. three samples from fcv-suspect cats could not be analyzed for b. bronchiseptica, m. felis, felv and fiv because of a lack of material. statistical analysis statistical analysis was performed utilizing the freely available software program r version.. separately for the fcv-suspect and clinically healthy cats, descriptive statistics with frequencies for male and female cats, medians with 95 % confidence interval for age and proportions of the dichotomous variables with 95 % ci based on the binomial distribution are presented. regression models were applied to assess if the predictors were significantly associated with the outcome fcv infection. univariable regressions, with the outcome fcv were performed and odds ratios with 95 % wald confidence intervals are shown. due to the presence of missing values which reduced the number of complete cases for fcv-suspect animals to and for clinically healthy animals to missing values were imputed with the package missforest, separately for the fcv-suspect and clinically healthy cats. imputation was done iteratively based on a random forest approach. utilizing the imputed data sets, multivariable logistic regressions were performed with the package mass. models were built following two different approaches. first, all variables with a p-value <  in univariable regression were considered in different models, including interaction terms. model selection was based on aic with lower values of at least considered indicative of a better model fit. in case of between model differences smaller than the most parsimonious model was chosen. second, a stepwise regression approach in both directions was applied including all variables, irrespective of their p-values in the univariate approach and interaction terms. diagnostic plots were assessed for the robustness of the final models. results are presented as odds ratios and 95 % wald confidence intervals. fcv loads in swab/cytobrush samples were compared between two groups using the mann–whitney u-test and the graph-pad prism version. maps were produced using qgis geographic information system. canton boundaries were provided by the swiss federal office of topography.  summary statistics for all variables used in the statistical analysis for fcv-suspect and healthy cats are presented in table  this includes the pcr results for urtd-associated pathogens. fcv infection was detected in 45 % of the fcv-suspect cats and in 8 % of the healthy cats. among the fcv-suspect and healthy cats, 40 % and 14 % respectively, were co-infected with any of the tested urtd-associated pathogens. in summary, among the co-infected fcv-suspect cats, 77 % were positive for two, 21 % for three and 3 % for four pathogens. among the co-infected healthy cats, 93 % were positive for two and 7 % for three pathogens. for details see additional file in 26 % of the fcv-suspect cats, none of the tested urtd-associated pathogens were detected. five cats tested positive either for felv or for fiv. because of the low prevalence, fiv and felv infections were not considered in the statistical analysis. approximately two thirds of the cats lived in a group with other cats; details of the numbers of cats per group and the frequency of fcv infection are shown in additional file the majority of the fcv-suspect and healthy cats were vaccinated; of these 92 % of the fcv-suspect and the healthy cats had received a primary immunization defined as a minimum of two vaccinations two to six weeks apart with the same vaccine strain. in both groups of cats, the vaccine strain most frequently used for primary immunization was fcv f followed by fcv g1/. because of the small number of cats vaccinated with a vaccine strain other than f vaccine strain was not considered in the statistical analysis.table characteristics of the fcv-suspect and the healthy cats. the cats originated from different cantons in switzerland breedbc contact with dog with kennel coughc primary immunizationd fcv positivee m. felis positivee fhv- positivee c. felis positivee b. bronchiseptica positivee aci = confidence interval. bonly breeds with > cats in the study are listed. cdue to low numbers, these variables were not considered in the statistical analysis. dprimary immunization was defined as two subsequent vaccinations within to 6 weeks with the same vaccine strain. epositive by real-time qpcr/rt-qpcr based on univariable regression models, in fcv-suspect cats intact reproductive status, living in a group of at least four cats, co-infection with m. felis and both vaccination and primary immunization were found to be significantly associated with fcv infection. the former three predictors were found to be risk factors by approximately doubling the chance of a fcv infection. being vaccinated at all or having received a primary immunization were found to be protective factors by reducing the chance of a fcv infection by approximately 50 %. in contrast, amongst the clinically healthy cats, the vaccination predictors were not significantly associated with fcv infection. similarly to the fcv-suspect cats, intact reproductive status and living in a group of at least four cats were found to be risk factors, albeit with higher odds ratios and considerably larger confidence intervals than in the fcv-suspect cats. details on missing values, univariable regressions with complete case and imputed data sets are presented in additional file whereas p-values obtained with the original data and the imputed data are similar, p-values from complete case analyses differ slightly.table results of the univariable approach for the fcv-suspect and the healthy cats < primary immunizationb m. felis positived fhv- positived c. felis positived b. bronchiseptica positived parameters significantly associated with fcv infection are shown in bold. odds ratios and confidence intervals are given for p <  aci = confidence interval. bprimary immunization was defined as two subsequent vaccinations within to 6 weeks with the same vaccine strain. cnot applicable. dpositive by real-time qpcr/rt-qpcr based on multivariable regression models, in fcv-suspect animals only intact reproductive status, living in a group of at least four cats and co-infection with m. felis remained in the final model with all odds ratios being reduced by at least 10 % compared to the univariable results. based on the stepwise regression with all predictors, outdoor access was additionally found to be a risk factor for fcv infection. none of the variables describing vaccination were found to be significant in the multivariable models. regarding the clinically healthy cats, intact reproductive status and living in a group of at least four cats remained in the final model with higher odds ratios and larger confidence intervals than in the fcv-suspect cats. stepwise regression was not possible for this group of cats due to lack of convergence.table results from multivariable regressions for the fcv-suspect and the healthy cats parametera m. felis positivec only parameters significantly associated with fcv infection are shown abased on the stepwise regression with all predictors, additionally outdoor access was found to be a risk factor for fcv infection. bci = confidence interval. cpositive by real-time qpcr the clinical signs in the cats chosen by the veterinary practitioners because of fcv-related symptoms are shown in table  in approximately half of the fcv-suspect cats, gingivitis or classical signs of urtd, such as nasal discharge, ocular discharge, conjunctivitis and sneezing were present. approximately one third of the cats exhibited stomatitis or caudal stomatitis, about 10 % demonstrated oral or lingual ulceration and only a few were found with swollen joints, lameness, skin ulcerations or cutaneous edema. gingivitis, stomatitis, caudal stomatitis, salivation and oral and lingual ulcerations were significantly associated with fcv infection. in contrast, nasal and ocular discharge and sneezing were significantly less common in the fcv pcr-positive than in the fcv pcr-negative cats. when the fcv load in the sample material was compared between fcv-positive diseased and fcv-positive healthy cats, the fcv loads were higher in the diseased cats, although statistical significance was not reached.table association of clinical signs with fcv infection in the fcv-suspect cats significant associations are shown in bold aci = confidence interval fig. comparison of fcv loads in the swab/cytobrush samples from fcv-suspect cats and the healthy cats. loads are given as ct values from the real-time rt-qpcr s assay and are depicted as boxplots. a low ct value corresponds to a high load. of note, the measurements are semi-quantitative because of the collection procedure discussion the present study investigated fcv infection in diseased cats judged suspicious for fcv infection by private veterinarians and in clinically healthy cats, all sampled in different regions of switzerland. fcv infection was detected in 45 % of the cats with fcv-related symptoms. this relatively low percentage of pcr-positive symptomatic cats is in agreement with the prevalence of fcv infection in cats in uk with respiratory disease and in cats in germany with chronic gingivostomatitis. in the present study, cats were judged as fcv-suspect by the veterinary practitioners based on written instructions that listed fcv-related symptoms as described in the literature. interestingly, cats suffering from gingivitis and urtd-related symptoms were most commonly selected by the veterinarians. however, only gingivitis, stomatitis, caudal stomatitis, salivation and oral and lingual ulcerations were significantly associated with fcv infection but not the classical signs of urtd, such as sneezing, nasal and ocular discharge. in contrast, sneezing, nasal and ocular discharge were significantly less common in the fcv-positive cats when compared to the fcv-negative cats. this finding contrasts earlier studies where fcv infection was significantly associated with feline respiratory tract disease. however, in accordance with our results, bannasch and co-workers found that among the five pathogens associated with urtd examined, the most important contributors to urtd were fhv- mycoplasma species and c. felis. acute fcv is known to induce vesicular disease, which typically manifests as oral and lingual ulcerations. ocular and nasal discharge is only rarely reported after experimental fcv infection. chronic fcv infection has been strongly associated with the presence of gingivostomatitis, although the exact pathogenesis of this disease is still unknown. our data suggest that for a clinical diagnosis of fcv infection, the fcv-related symptoms should be reconsidered and more stringently defined and the diagnosis confirmed by molecular testing. it needs to be noted that the relatively low detection rate of fcv in the fcv-suspect cats could also be attributed to a limited diagnostic sensitivity of the applied diagnostic assays. in the current study, the criterion of being fcv-positive was based on the presence of at least one positive out of four real-time rt-qpcr runs. this approach was chosen to maximize diagnostic sensitivity. however, the remarkably high genetic variability of fcv increases the likelihood of potential mismatches in the primer or probe binding sites, thus leading to the possibility of failed real-time pcr amplification. interestingly, 26 % of the fcv-suspect cats tested negative for all urtd-associated pathogens. cats with a non-infectious etiology for urtd could account for some of these cases. cats with non-infectious urtd are clinically indistinguishable from cats with urtd caused by infectious agents. additionally, the detection of the urtd-associated pathogens could have failed due to sample degradation during the transport from the veterinary practices to the laboratory. to avoid or minimize this effect, the samples in the present study were analyzed within 96 h of collection. finally, the diagnostic sensitivity of the pcr assays could have been hampered by genetic alterations of the pathogens within the target sequence of the applied pcr assays. however, in contrast to rna viruses such as fcv, a high genetic variability is not necessarily expected for fhv- c. felis, m. felis and b. bronchiseptica. approximately 8–9 % of the healthy cats in the present study tested pcr-positive for fhv- and fcv. this proportion is lower for fcv than reported in earlier studies in the uk and in germany. as previously reported, it is important to remember that some cats, although clinically healthy, are shedders of infectious pathogens related to urtd. in the present study, risk factor analysis was performed with univariable and multivariable regression models. the latter were performed with imputed data sets due to missing data. the selected multivariable regression approach offers, in contrast to univariable approaches, the possibility to adjust for confounding. inevitably however, it remains possible that not all relevant confounders were recorded. missing values leading subsequently to different sample sizes of models with different variables, preclude the possibility to compare the model fit: thus data sets with imputed variables for the missing values were generated. although resulting p-values obtained with the original and the imputed data sets were similar in univariable analysis, any imputation may potentially include bias. two model-building approaches were performed for the fcv-suspect cats to assure robustness of the final models. although found to be significant protective factors in univariable models, statistical association for vaccination status and primary immunization vanished in multivariable analysis. one reason might be that the predictors “vaccination status” and “primary immunization” with the categories “yes” and “no” comprised a number of different vaccines, vaccinations schemes and time elapsed since vaccination, thus, potentially being too heterogeneous to actually show a statistical association. in addition, fcv vaccines do not induce sterilizing immunity, although they have been shown to reduce the severity of clinical signs. therefore, vaccine protection cannot be solely judged by the pcr status of a cat. furthermore, a cross-sectional study is rather limited in assessing causal relationships, especially since in a cross-sectional approach only prevalence can be estimated whereas incidence would be more relevant. an intact reproductive status, living in a group with at least four cats and co-infection with m. felis were found to be risk factors for fcv infection. all of these three factors approximately doubled the chance of finding a fcv infection. a number of interaction terms, including interaction between groups of at least four cats and m. felis infection or between vaccination and intact reproductive status, were tested for potential association but none was found to be statistically significant. an association of fcv with intact reproductive status has been reported in an earlier study. although no clear explanation can be given for this association, possible reasons postulated earlier include hormonal effects, which might alter the replication and the persistence of the virus, and more social or aggressive interactions between the intact animals. the association of fcv infection with housing in large groups of cats was reported in previous studies. cats kept in large groups are exposed to a higher infectious pressure compared with cats living in smaller groups. the high plasticity of the fcv genome and positive selection by the immune system support genomic mutations and lead to a progressive evolution of fcv variants in cat groups with cyclic reinfection of previously immune cats. in addition, strict quarantine measures and excellent hygiene can be more challenging to guarantee in large groups of cats, thereby favoring fcv infections. breeders and other cat owners should be educated about the benefits of housing cats in small groups. a reduced group size does not only reduce the risk of infection related to urtd in cats but also the risk of other feline infections and the development of feline infectious peritonitis. no clear explanation can be given for the association of fcv infection with m. felis co-infection. possible reasons could be a similar transmission route, pathogenesis or similar risk factors for infection. fcv and fhv- infection have often been reported to occur concurrently, and cats co-infected with fcv and fhv- had a high risk of developing urtd. however, no association between fcv infection and co-infections with the other tested pathogens fhv- c. felis and b. bronchiseptica were found in the present study. the different housing categories including private home, farm, breeder, feral cat and cattery were recorded in this study, but since the vast majority of cats was kept in private homes, it was not possible to disentangle the effect of different housing categories. the variable breed was dichotomized into pedigree and non-pedigree cats for statistical analysis because the number of cats per breed was small. the absence of a statistical association does therefore not preclude any potential association between specific breeds and fcv infection. for example out of fcv-suspect maine coons, were found to be fcv-infected and suffer from gingivostomatitis. it is known that purebreds, such as the maine coons, are predisposed to develop early or severe periodontal disease, but no association with fcv infection has been described thus far. it should be noted however that of the fcv-positive main coons were housed in groups. in the present study, 76 % and 80 % of the fcv-suspect and healthy cats, respectively, were vaccinated against fcv and fhv-. this vaccination rate seems higher than the rate estimated for switzerland in according to the number of sold vaccine doses. thus, according to our numbers, the proportion of vaccinated cats would be sufficiently high to provide some protection for the population within the sampled population as opposed to protection of the vaccinated host only. however, the present study is based on preselected populations of cats and some of the cats had not received a proper primary immunization or were lacking the necessary booster vaccinations, leaving some doubts about the actual level of protection.  the present study assessed fcv infection in cats judged fcv-suspect by veterinary practitioners and in clinically healthy cats in switzerland. fcv infection was detected in less than half of the fcv-suspect cats. within this group of cats, infection was significantly associated with gingivitis, stomatitis, caudal stomatitis, oral and lingual ulcerations, but not with classical signs of urtd, such as sneezing, nasal and ocular discharge. these results suggest that the fcv-related symptoms should be critically reassessed and probably more stringently defined. fcv infection was also detected in some healthy cats; this observation underlines the importance of asymptomatic shedders in fcv epidemiology. housing in large groups of cats was among the risk factors for fcv infection. thus, if problems with fcv are encountered in multi-cat environments, reduction of group size in addition to the generally recommended vaccination and quarantine measures for incoming and sick cats are advocated. additional files additional file 1: number of cats pcr-positive for urtd-associated pathogens and co-infections thereof. the fcv-suspect and healthy cats originated from different cantons in switzerland. additional file 2: frequency of fcv-positive and fcv-negative cats according to number of cats housed per group. a) fcv-suspect cats; b) healthy cats. fcv-pos./neg. = fcv-positive/negative in fcv real-time rt-pcr. number of cats = 1: single cats. the numbers in the bars represent the absolute numbers of cats in the respective category. additional file 3: details on missing values, univariable regressions with complete case and imputed data sets. abbreviations b. bronchisepticabordetella bronchiseptica c. felischlamydophila felis ciconfidence interval fcvfeline calicivirus felvfeline leukemia virus fhv-1feline herpesvirus-1 fivfeline immunodeficiency virus m. felismycoplasma felis qpcrquantitative polymerase chain reaction rt-qpcrreverse-transcriptase qpcr tnatotal nucleic acid urtdupper respiratory tract disease alice berger and barbara willi contributed equally to this work. competing interests the authors declare that they have no competing interests. authors’ contributions hl and rhl conceived the study. bw, fsb and rhl participated in the design and coordination of the study. ab carried out the sample and data collection and part of the laboratory work. bw and fsb were responsible for clinical aspects of the study. mlm was responsible for all laboratory aspects. rhl, sh, ad and ab performed the statistical analysis. bw, rhl and ab drafted the manuscript. mlm, fsb, sh and hl edited the manuscript. all authors read and approved the final manuscript. 
to reduce fcv-related problems in multi-cat environments, reduction of group size in addition to the generally recommended vaccination are advocated. additionally, healthy cats can shed fcv. the aims of this study were 1) to investigate the frequency of fcv in cats with fcv-related symptoms and in healthy cats in switzerland, 2) to assess risk and protective factors for infection, such as signalment, housing conditions, vaccination, and co-infection with urtd-associated pathogens, and 3) to address the association between clinical symptoms and fcv infection. oropharyngeal, nasal and conjunctival swabs were collected in veterinary practices from fcv-suspect and healthy cats originating from cantons of switzerland. in healthy cats, intact reproductive status and group housing were found to be associated with fcv infection. fcv infection was present in some healthy cats, underlining the importance of asymptomatic carriers in fcv epidemiology. within the two populations, the observed pcr prevalences were: fcv 45 %/8 %, fhv- 20 %/9 %, c. felis 8 %/1 %, b. bronchiseptica 4 %/2 %, m. felis 47 %/31 % and any co-infections thereof 40 %/14 %. oral ulcerations, salivation, gingivitis and stomatitis, but not classical signs of urtd were significantly associated with fcv infection. the samples were tested for fcv using virus isolation and reverse-transcription real-time quantitative polymerase chain reaction and for feline herpesvirus-, mycoplasma felis, chlamydophila felis, bordetella bronchiseptica using real-time qpcr. cats with feline calicivirus -related symptoms are commonly presented to veterinary practitioners. feline calicivirusfeline herpesvirus-1mycoplasma felischlamydophila felisrisk factorsvaccinationupper respiratory tract diseasegingivostomatitisoral ulcerationsmultivariable analysisissue-copyright-statement© the author 2015 based on multivariable regression models amongst fcv-suspect cats, co-infection with m. felis, group housing and intact reproductive status were found to be risk factors for fcv infection. based on an univariable approach, fcv-suspect cats were found to be significantly less often fcv-positive when vaccinated. fcv was detected in less than half of the cats that were judged fcv-suspect by veterinary practitioners. upper respiratory tract disease, oral ulcerations, gingivostomatitis, limping syndrome and virulent systemic disease. for a clinical diagnosis, fcv-related symptoms should be revisited.
 cats with feline calicivirus -related symptoms are commonly presented to veterinary practitioners. various clinical manifestations have been attributed to fcv, i.e. upper respiratory tract disease, oral ulcerations, gingivostomatitis, limping syndrome and virulent systemic disease. additionally, healthy cats can shed fcv. the aims of this study were 1) to investigate the frequency of fcv in cats with fcv-related symptoms and in healthy cats in switzerland, 2) to assess risk and protective factors for infection, such as signalment, housing conditions, vaccination, and co-infection with urtd-associated pathogens, and 3) to address the association between clinical symptoms and fcv infection.  oropharyngeal, nasal and conjunctival swabs were collected in veterinary practices from fcv-suspect and healthy cats originating from cantons of switzerland. the samples were tested for fcv using virus isolation and reverse-transcription real-time quantitative polymerase chain reaction and for feline herpesvirus-, mycoplasma felis, chlamydophila felis, bordetella bronchiseptica using real-time qpcr. within the two populations, the observed pcr prevalences were: fcv 45 %/8 %, fhv- 20 %/9 %, c. felis 8 %/1 %, b. bronchiseptica 4 %/2 %, m. felis 47 %/31 % and any co-infections thereof 40 %/14 %. based on multivariable regression models amongst fcv-suspect cats, co-infection with m. felis, group housing and intact reproductive status were found to be risk factors for fcv infection. in healthy cats, intact reproductive status and group housing were found to be associated with fcv infection. based on an univariable approach, fcv-suspect cats were found to be significantly less often fcv-positive when vaccinated. oral ulcerations, salivation, gingivitis and stomatitis, but not classical signs of urtd were significantly associated with fcv infection.  fcv was detected in less than half of the cats that were judged fcv-suspect by veterinary practitioners. for a clinical diagnosis, fcv-related symptoms should be revisited. fcv infection was present in some healthy cats, underlining the importance of asymptomatic carriers in fcv epidemiology. to reduce fcv-related problems in multi-cat environments, reduction of group size in addition to the generally recommended vaccination are advocated. electronic supplementary material the online version of this article contains supplementary material, which is available to authorized users. keywords feline calicivirusfeline herpesvirus-1mycoplasma felischlamydophila felisrisk factorsvaccinationupper respiratory tract diseasegingivostomatitisoral ulcerationsmultivariable analysisissue-copyright-statement© the author 2015 