BACKGROUND
pseudomonas aeruginosa is an important opportunistic human pathogen.
it is known for its ability to inhabit diverse habitats ranging from soil to immunocompromised individuals  <cit> .
in these environments, it can adopt either a planktonic or a surface-associated biofilm lifestyle.
biofilms, structured surface-associated microbial communities, are of considerable interest as they constitute an important survival strategy in infections  <cit> .
p. aeruginosa forms different types of biofilms depending on the environment.
in static liquid culture it forms pellicles at the air-liquid interface, under flow it can form solid surface-associated  biofilms and on solid agar medium it forms colonies  <cit> .
colonial growth is an easy and commonly used assay to study development of multicellular structures like biofilms  <cit> .
biofilms are encased in a matrix composed of exopolysaccharide , but also extracellular dna , proteins, rna and ions  <cit> .
there are two main eps in non-mucoid p. aeruginosa, pel  and psl    <cit> .
pel is glucose rich whereas psl is galactose and mannose rich  <cit> .
p. aeruginosa strain pa <dig> only contains pel while strains pao <dig> and zk <dig> contain both pel and psl  <cit> .
all of these strains are clinical isolates that differ in their aggregative behavior.
while strains pa <dig> and pao <dig> are the most commonly used laboratory strains, strain zk <dig> with its autoaggregative phenotype is believed to be the most representative among clinical strains  <cit> .
quorum sensing  is a cell density-dependent mechanism of bacterial communication that coordinates other group behaviors.
p. aeruginosa has two complete acyl-homoserine lactone -based qs systems, las and rhl  <cit> .
they consist of the transcriptional regulators lasr and rhlr and the signal synthases, lasi and rhli, respectively.
lasi and rhli catalyze the synthesis of n-3-oxododecanoyl-homoserine lactone  and n-butryl-homoserine lactone , which bind and activate their cognate transcriptional regulators lasr and rhlr, respectively.
both systems are arranged in a hierarchical manner with the las system controlling the rhl system  <cit> .
a third qs system in p. aeruginosa, pqs, is based on alkyl quinolones   <cit> .
this system connects both the las and rhl qs systems.
it includes the transcriptional regulator pqsr , which positively regulates the expression of the pqsa-e operon.
pqsa-d enzymes are involved in the synthesis of 4-hydroxyalkyl quinolines   <cit> .
this class of compounds is converted to  <dig>   <dig> dihydroxyquinolines  by a monoxygenase encoded by the pqsh gene  <cit> .
the most prominent series a congeners are 4-hydroxy-2-heptyl quinoline  and 4-hydroxy-2-nonyl quinoline , and the most prominent series b congener is  <dig> -dihydroxy-2-heptyl quinoline , due to their established roles as cell-cell signaling molecules.
hhq/hnq and pqs bind pqsr with low and high affinity, respectively, and are capable of activating the protein  <cit> .
lasr positively regulates aq production by upregulating pqsr  <cit>  and pqsh  <cit>  transcription, although under certain culture conditions, aq can also be produced in the absence of a functional las system  <cit> .
the rhl system, in turn, represses pqsr and pqsa-e expression  <cit> .
the aq biosynthetic enzymes enable p. aeruginosa to produce more than  <dig> distinct aq molecules  <cit> .
together, the three qs systems, las, rhl, and pqs, regulate > 5% of the p. aeruginosa genome  <cit> .
several studies have investigated the contribution of each qs system to biofilm formation.
a functional las system is required for formation of highly structured ssa biofilm communities in p. aeruginosa pao <dig>  <cit> .
the las system influences biofilm matrix formation and activation of pel eps  <cit> .
in another study, the las system was shown to indirectly inhibit pel expression through weak activation of the tyrosine phosphatase tpba  <cit> .
the rhl qs system contributes to maintenance of biofilm architecture through production of rhamnolipid surfactants  <cit> .
the pqs system in turn is implicated in autolysis  <cit>  and maintaining biofilm integrity as a consequence of edna release  <cit> .
in addition, the contribution of qs to biofilm formation is modulated by environmental factors such as nutritional cues  <cit> .
taken together, the role of qs in biofilm formation is multifactorial.
our recent work suggested yet another connection between qs and eps production.
we showed by chromatin immunoprecipitation-microarray analysis  and electrophoretic mobility shift assay that lasr binds to the putative promoter region of the psl eps operon  <cit>  .
this finding led us to investigate in more detail how lasr mutation affects eps production and colony biofilm formation.
a lasr mutant of p. aeruginosa strain zk <dig> exhibited a pronounced wrinkled colony morphology at 37°c suggesting a possible link between las qs and psl expression.
however, we found that the wrinkled phenotype is pel rather than psl-dependent.
subsequent suppressor mutagenesis in the lasr mutant background implicated the involvement of the pqs pathway.
phenotypic analysis and quantitation of aq levels by thin-layer chromatography  of several qs mutants revealed that a series a congener, likely other than hhq or hnq, modulates the structural organization of a colony.
this study broadens the functional significance of aq production by p. aeruginosa.
our recent work suggested yet another connection between qs and eps production.
we showed by chromatin immunoprecipitation-microarray analysis  and electrophoretic mobility shift assay that lasr binds to the putative promoter region of the psl eps operon  <cit>  .
this finding led us to investigate in more detail how lasr mutation affects eps production and colony biofilm formation.
a lasr mutant of p. aeruginosa strain zk <dig> exhibited a pronounced wrinkled colony morphology at 37°c suggesting a possible link between las qs and psl expression.
however, we found that the wrinkled phenotype is pel rather than psl-dependent.
subsequent suppressor mutagenesis in the lasr mutant background implicated the involvement of the pqs pathway.
phenotypic analysis and quantitation of aq levels by thin-layer chromatography  of several qs mutants revealed that a series a congener, likely other than hhq or hnq modulates the structural organization of a colony.
this study broadens the functional significance of aq production by p. aeruginosa.
methods
bacterial strains and growth conditions
strains and plasmids are listed in table  <dig>  we used three strains of p. aeruginosa in this study, namely the widely used clinical isolates pao <dig> and pa <dig>  and the more recent clinical isolate zk <dig>   <cit> .
bacterial cultures were grown at 22°c and 37°c as specified.
lennox broth   <cit>  or tryptone broth  <cit>  were used for routine culturing.
tryptic soy broth  was used for flow-cell biofilm assays.
where appropriate, antibiotics were added to the growth media as follows: tetracycline and gentamicin,  <dig> μg/ml for p. aeruginosa and  <dig> μg/ml for escherichia coli; carbenicillin,  <dig> μg/ml for p. aeruginosa; ampicillin,  <dig> μg/ml for e. coli.
strain or
plasmid
strain and plasmid constructions
deletion mutants were constructed using the strategy of hoang et al.
<cit> .
zk lasr and lasi mutants were generated by introducing the previously constructed allelic exchange plasmids pex <dig> Δlasr and pex <dig> Δlasi, respectively  <cit> , into the parent strain and selecting on lb agar containing nalidixic acid  and tetracycline.
double cross-over recombinants were further selected on lb plates supplemented with 5% sucrose  <cit> .
the pqsh and tbpa in-frame deletions were constructed using soe-pcr  <cit> .
the respective primers are listed in additional file 1: table s <dig>  the deletion constructs obtained from soe-pcr were digested with the appropriate restriction enzymes  and ligated into equally digested pex <dig>  <cit> .
the resulting constructs pex <dig> Δpqsh and pex <dig> Δtpba were transformed into e. coli sm <dig>  mating with p. aeruginosa zk and appropriate selection as discussed above yielded pqsh and tpba deletion mutants.
the pela lasr and psld lasr double mutants were constructed by generating an in-frame lasr deletion  in pela and psld mutant backgrounds, respectively.
a lasr pqsh double mutant was constructed by pqsh deletion in a lasr mutant background.
proper construction of deletion mutants was confirmed by pcr amplification of chromosomal dna.
the plasmid prg <dig> was constructed by amplifying a  <dig>  kb region containing the pqsa-d genes using appropriate primers  and cloning between the psti and hindiii restriction sites of the pucp <dig> vector  <cit> .
colony biofilm assay
bacterial cultures were grown overnight in lb at 37°c.
the overnight culture was diluted to an optical density  of  <dig>  in tryptone broth and  <dig> μl of the diluted culture was spotted onto congo red plates  <cit> .
the congo red medium contained tryptone , granulated agar , congo red , and coomassie brilliant blue r  <dig> .
the plates were wrapped with aluminum foil and incubated at 37°c for 3- <dig> days.
for bacterial strains containing plasmid plg <dig> or prg <dig>  carbenicillin was added to the medium.
chemical supplementation
3oc12-hsl was added to congo red plates buffered with  <dig> μm 3- propanesulfonic acid  at a final concentration of  <dig> μm.
pyocyanin was added to congo red plates at a final concentration of  <dig> μm.
hhq  and hnq  were added to mops-buffered congo red plates at a final concentration of  <dig> μm or directly to the bacterial inoculum at final concentrations of  <dig>   <dig> and  <dig> μm.
the respective solvents ethyl acetate, dimethyl sulfoxide , and methanol were used as controls.
pel'-lacz-reporter construction and β-galactosidase measurements
a  <dig> bp promoter region of the pel operon was amplified from the zk strain using the primers listed in additional file 1: table s <dig> and cloned upstream of the lacz gene in the integration vector mini-ctx-lacz  <cit> .
the resulting plasmid prg <dig> was then inserted into the chromosome of the wild-type and the lasr mutant as described  <cit> .
as a control, the mini-ctx-lacz parent vector was also integrated into the genome.
the colonies of the zk wild-type and the lasr mutant grown on congo red plates at 37°c were used to measure β-galactosidase levels.
a colony was cut out on the 3rd, 4th, and the 5th day and suspended in  <dig> ml of  <dig> mm phosphate buffer, ph  <dig> , in a  <dig> ml conical tube.
cells were lysed by sonication.
the total protein was estimated by bradford assay  <cit> .
the sonicated sample was centrifuged at 4°c for  <dig> min.
the resulting supernatant was used to measure β-galactosidase activity as described previously  <cit> .
pellicle biofilm assay
cultures were inoculated in tryptone broth at an od <dig> of  <dig>  and incubated at 22°c and 37°c without shaking  <cit> .
after  <dig>   <dig> and  <dig> h, pellicle formation was observed at the air-liquid interface.
microtiter plate biofilm assay
biofilm formation in a microtiter format was assayed as described  <cit> .
overnight cultures of the wild-type and the lasr mutant grown in lb broth at 37°c were diluted 1: <dig> in tryptone broth.
one hundred and fifty μl of the diluted culture was added to 96-well polystyrene microtiter plates  and incubated at 22°c and 37°c without shaking for  <dig> and  <dig> h. microtiter plates were rinsed in running hot water.
adherent cells were then stained with 1% crystal violet for  <dig> min.
the microtiter plate was again rinsed in running hot water.
ethanol was added to each dry well and the samples were allowed to stand for  <dig> min.
absorbance was measured at  <dig> nm.
flow-cell biofilm assay
biofilms were grown at 37°c in flow chambers.
the system was assembled as described  <cit> .
the cultures for inoculation were prepared from mid-exponential phase  tsb cultures grown at 37°c.
the cultures were diluted to an od <dig> of  <dig>  in 1: <dig> diluted tsb medium and injected into the flow cell.
flow was initiated after  <dig> h. the diluted tsb was supplied at a flow rate of  <dig> μl/min using a peristaltic pump .
images were taken when biofilms had matured  with an inverted zeiss lsm zeta  <dig> confocal laser scanning microscope  using a 63x oil immersion lens.
the manufacturer's software and adobe photoshop were used for image processing.
suppressor mutagenesis
for transposon mutagenesis, biparental matings were set up between the e. coli donor  and the p. aeruginosa recipient strain  as described  <cit> .
the suicide plasmid plm <dig> carries a minitn <dig> transposon.
the transposon insertion mutants were selected on lb agar plates containing gentamicin  and nalidixic acid .
colonies were picked manually and patched onto rectangular lb plates containing gentamicin  in a 96-well format.
plates were incubated at 37°c for one day and then replica-plated onto rectangular congo red plates using a 96-well-pin replicator.
the zk wild-type and the lasr mutant were included as controls.
these plates were incubated for 3-  <dig> days at 37°c.
candidate revertants exhibiting a smooth colony morphology identical to the wild-type were streaked for isolated colonies and subjected to a second screen.
this screen involved performing the original colony biofilm assay as described earlier.
mutants which again showed a smooth phenotype were considered to be true revertants.
mapping of transposon insertions
genomic dna was isolated from the selected transposon mutants  and was digested with ncoi.
the transposon does not contain an ncoi restriction site and has an r6k origin of replication.
the digested dna was self-ligated with t <dig> dna ligase  and electroporated into chemically competent e. coli s17-1/λpir  <cit> .
plasmid dna was isolated from gentamicin-resistant colonies and was sequenced using the tn <dig> specific primer tnprl17- <dig>  <cit> .
transposon insertions were mapped by comparing sequences to a pseudomonas protein database using blastx.
overexpression of pqsa-e
the appropriate strains were transformed with plasmid plg <dig>  <cit>  and prg <dig> carrying the pqsa-e operon and pqsa-d operon under the control of native and constitutive promoters, respectively, or with pucp <dig>  <cit> , the parent vector from which plg <dig> and prg <dig> were derived.
thin-layer chromatography
samples for tlc analysis were prepared from 3- <dig> day-old colonies.
two colonies of each strain grown on the same plate were cut out from the agar with minimum possible agar contamination.
one colony was used for total protein estimation and the other for aq extraction.
total protein was estimated by bradford assay  <cit>  as described earlier for β-galactosidase measurements.
for aq extraction, a colony was harvested and suspended in  <dig> ml methanol, homogenized with a tissue tearor, and allowed to stand for  <dig> min.
the suspension was centrifuged for  <dig> min at  <dig> r.p.m.
at 4°c.
the supernatant was filtered through a  <dig>  μm syringe filter and the filtrate was collected in glass vials prewashed with acetone.
the samples were then air-dried, reconstituted in  <dig> μl of methanol and transferred to  <dig> ml glass vials.
they were again air-dried and finally reconstituted in  <dig> μl of methanol.
tlc plates were prepared and samples were run as described  <cit> .
five μl of the sample ,  <dig> μl of the standards-pqs , and hhq  were used.
aq levels were estimated in the wild-type and the lasr mutant by densitometric analysis of relative spot intensities using imagequant tl software  from two independent experiments.
RESULTS
a zk lasr mutant forms wrinkly colonies
we investigated the effect of a lasr mutation on colony morphology as an indicator of matrix production  <cit> .
a wrinkled colony phenotype is generally associated with increased eps production and biofilm formation.
our agar medium also contained congo-red, which may stain colonies overproducing eps  <cit> , but is not always a reliable indicator, especially at 37°c  <cit> .
we therefore focused on colony wrinkling .
we grew the wild-type and lasr mutants of three p. aeruginosa strains, namely widely used strains pao <dig> and pa <dig>  and the autoaggregative strain zk <dig>  <cit> , on agar plates for  <dig> days at 37°c and at 22°c.
growth conditions are identical to those previously used to investigate eps-dependent colony morphology  <cit> .
we did not observe any significant differences in rugosity between the pao <dig> wild-type and lasr mutant strains at either temperature .
however, the colonies of the wild-type and the lasr mutant of strains pa <dig> and zk showed striking differences.
a pa <dig> lasr mutant formed a flat, smooth colony as compared to the wrinkled wild-type phenotype at 22°c .
on the contrary, a zk lasr mutant formed a distinctive wrinkled colony at 37°c while the wild-type formed a smooth colony .
at room temperature, the morphological difference between the wild-type and the zk lasr mutant was not as pronounced.
a positive regulatory link between las qs, pel transcription and colony morphology has already been described in strain pa <dig>  which only carries pel eps  <cit> .
the apparently reverse relationship between las qs and colony morphology at 37°c in strain zk, which harbors both pel and psl, was intriguing to us and is the focus of this study.
to confirm that the observed phenotype is generally dependent on a non-functional las system, we also constructed a zk lasi in-frame deletion mutant.
a zk lasi mutant showed a well defined wrinkled colony like the lasr mutant at 37°c .
supplementation of the lasi mutation with exogenous 3oc12-hsl signal virtually restored the smooth wild-type phenotype .
this confirms that the las system is responsible for the wrinkled colony phenotype.
we used the zk lasr mutant for further study.
genetic analysis indicates involvement of pel rather than psl
we performed mutational analysis to investigate whether pel or psl eps might cause wrinkling of the lasr mutant.
we constructed pela lasr and psld lasr double mutants and compared their colony morphology to that of the lasr mutant and the wild-type parent.
a pela lasr double mutant showed a nearly smooth colony phenotype while the psld lasr mutant showed a wrinkled phenotype like the lasr mutant .
we evaluated the contribution of pel alone by comparing the colony morphology of a pela mutant to the wild-type.
the pela colony phenotype was indistinguishable to that of the wild-type.
the partial loss of wrinkles in a pela lasr double mutant therefore indicates inhibition of pel by lasr.
to determine whether inhibition is at the transcriptional level, we measured pela transcription in the wild-type and the lasr mutant using a pela'-lacz transcriptional fusion inserted at a neutral chromosomal site.
we harvested colonies after  <dig>   <dig> and  <dig> days, because a zk lasr mutant begins to show wrinkling at day  <dig>  we found no difference in pela transcription in the wild-type and the lasr mutant .
this indicates that pel regulation is at the posttranscriptional level.
we attempted to investigate this possibility by quantifying eps; however, we were unable to perform an eps composition and linkage analysis because of insufficient amounts of purified eps extracted from colonies required for such analysis.
investigation of other factors associated with pel and the wrinkled colony phenotype
we investigated the role of phenazines and of the tyrosine phosphatase tpba in the observed wrinkled phenotype of a zk lasr mutant as both modulate structural organization of p. aeruginosa pa <dig> colony biofilms  <cit> .
we examined the relationship between phenazine deficiency and the wrinkled phenotype through addition of pyocyanin to the agar medium.
pyocyanin supplementation did not result in loss of wrinkles in the lasr mutant .
inhibition of tpba in strain pa <dig> has been shown to enhance pel expression at 37°c, resulting in a wrinkled colony phenotype  <cit> .
we therefore constructed a tpba mutant in the zk background and examined colony morphology.
the tpba mutant remained as smooth as the wild-type .
these results indicate neither pyocyanin nor tpba are responsible for the wrinkled phenotype of the zk lasr mutant.
hydrated lasr mutant biofilms do not show altered architecture
the involvement of pel in the wrinkled colony morphology of the zk lasr mutant suggested that it might exhibit generally altered biofilm architecture.
we investigated pellicle formation of standing cultures as well as biofilm formation in microtiter plates and flow-cells.
flow-cell biofilms of the wild-type and the lasr mutant after  <dig> days of growth are shown in figure  <dig>  neither assay revealed any differences between the two strains.
this is consistent with recent results by colvin et al., who also found no defect in attachment or biofilm development for a pel mutant of strain pao <dig>  <cit> .
there is a difference in the degree of hydration in the three biofilm assays we employed.
submerged flow-cell biofilms are fully saturated and hydrated, pellicles and microtiter plate biofilms that form at the air-liquid interface are somewhat less hydrated, whereas colonies on agar are the least hydrated  <cit> .
it is possible that the observed phenotype only manifests under conditions of low hydration.
suppressor mutagenesis implicates the pqs pathway
transposon mutagenesis was performed in the zk lasr mutant background to identify the regulatory link between the las qs system and colony morphology.
around  <dig>  mutants were screened for reversion to a smooth phenotype.
we identified  <dig> mutants, and mapped transposon insertions in  <dig> .
we found  <dig> transposon insertions in the pqsa-d genes of the aq biosynthesis operon and one insertion in the gene encoding the transcriptional regulator pqsr that activates pqsa-e expression .
given the large fraction of hits , the role of the pqs operon was apparent even without mapping the remaining transposon mutants.
we did not identify any insertions in pqsh, which promotes the conversion of series a  to series b  congeners nor in pqse, which encodes a putative global regulator  <cit> .
surprisingly, we also did not identify a transposon insertion in the pel operon, although our data in figure  <dig> show that the lasr pel mutant forms a smooth colony.
we found that this mutant displayed very slight wrinkling under the conditions employed for the high throughput screen, in which our primary focus was on the identification of the most obvious smooth revertants.
the wrinkly phenotype of the lasr pqsa::tn suppressor mutant could be restored by introducing plasmid plg <dig>  <cit> , which expresses the pqsa-e operon from its native promoter .
this verifies that the products of this operon are indeed responsible for the wrinkled phenotype of the lasr pqsa:tn mutant.
to investigate whether pqsa-d dependent wrinkling of the lasr mutant is through pqsr, we introduced plasmid prg <dig> into the lasr pqsr:tn mutant.
this plasmid constitutively expresses the pqsa-d operon from a lac promoter.
the lasr pqsr:tn mutant colony was as wrinkly as that of the lasr mutant indicating that this phenotype is independent of pqsr .
a series a aq congener causes the wrinkled phenotype
the previous finding that lasr mutants overproduce series a congeners  <cit>  and the fact that we did not find any insertion in the pqsh gene indicate that series a congeners rather than series b congeners are responsible for the wrinkled phenotype.
we therefore examined this notion further by correlating colony morphology and aq production, as measured by tlc, in a number of mutant strains.
tlc allowed us to distinguish between high-abundance series a and b congeners.
this assay was developed and has been optimized to detect pqs and hhq, owing to their important roles in cell-cell signaling.
compounds within each series, especially c <dig> and c <dig> congeners, are not well separated, and low-abundance compounds may not be detectable  <cit> .
we included the wild-type, the lasr mutant, and the lasr pqsa::tn suppressor mutant in this analysis.
in addition, we constructed a pqsh single mutant and a lasr pqsh double mutant in the zk background.
if a series a congener caused wrinkling, then a lasr pqsh mutant should still be wrinkly, and a pqsh mutant would also be wrinkly if a series a congener accumulates.
indeed, the degree of wrinkling generally correlated well with the amount of series a congener produced, in the order lasr-pqsa::tn < wt <pqsh <lasr and lasr pqsh .
the wrinkly lasr mutant and the lasr pqsh double mutant produce the most, while the smooth wild-type produces considerably less .
the fact that the wrinkly lasr pqsh mutant does not produce series b congeners implies a role for a series a congener.
it is not clear why the pqsh single mutant does not overproduce series a congeners as previously shown for strain pa <dig>  <cit> .
it is possible that pqsa-e expression is reduced because indirect inhibition by the las system via the rhl system and the lack of the strong inducer pqs have a larger effect in the zk background.
regardless, the partially wrinkly phenotype of the pqsh mutant indicates that in addition to absolute abundance, the ratio of series a to b congeners may also be important.
densitometric analysis of wild-type and lasr mutant tlc spot intensities indeed shows that the series a to series b ratio is reciprocal in the two strains .
two series a compounds, the pqs precursor hhq and hnq, have been shown to be overproduced in a lasr mutant  <cit> .
to examine whether one of these compounds is responsible for the wrinkly morphology of the lasr mutant, we added them to the lasr pqsa suppressor mutant.
exogenous addition to the agar medium or directly to the bacterial inoculum did not result in any change in colony morphology .
it is possible that diffusible aq compounds are unable to enter cells in sufficient quantity, or that another less well-characterized series a congener is responsible for the observed phenotype.
because exogenous complementation with diffusible aq has been successful in the past  <cit> , we favor the latter.
CONCLUSIONS
in this study, we investigated the effect of las qs on biofilm formation and structure using a colony biofilm approach.
this work was motivated by our recent global position analysis of lasr, which showed that this regulator directly binds to the psl polysaccharide promoter  <cit>  .
while we were unable to demonstrate the significance of this finding in the present study, we established a novel connection between las qs and the other major p. aeruginosa eps, pel.
in particular, we provide genetic evidence suggesting that the lasri system represses pel.
we do not have any other independent evidence of this regulatory link as eps composition analysis was unsuccessful.
las qs also only affected colonial morphology and did not affect biofilm formation in other relevant assays, including microtiter plate, pellicle, and flow-cell.
it is conceivable that water availability  is responsible for the conditionality of the observed phenotype.
it has previously been shown that lasri induces pel expression in strain pa <dig> at room temperature but not at 37°c  <cit> .
this regulation is probably indirect and mediated via an unknown transcriptional regulator.
our finding that lasri can also repress pel expression in strain zk at 37°c, a temperature relevant to infection, raises the intriguing possibility that qs may trigger dissolution of clinical biofilms.
this would be analogous to other bacterial pathogens like vibrio cholerae  <cit>  and staphylococcus aureus  <cit> .
results with the particular strain chosen, zk <dig>  are significant, because the autoaggregative behavior of this strain under some environmental conditions appears most representative among clinical and environmental isolates of p. aeruginosa  <cit> .
the observed differences in the colony phenotype of different pseudomonas strains  might be attributed to the presence or absence of a particular eps locus or regulatory variability in strains with identical eps loci.
our second major finding is that las qs mediates colony morphology via aq signaling.
phenotypic analysis along with aq signal quantitation by tlc suggested that a series a congener is involved.
pqsa-d produce at least  <dig> different compounds within this series  <cit> .
of these, hhq and hnq have been shown to accumulate in a pao <dig> lasr mutant  <cit> .
other prominent aqs,  <dig> -dihydroxyquinoline  and 2-heptyl-4-hydroxyquinoline n-oxide , that require some of the enzymes encoded by pqsa-d, but are not pqsh substrates, show reduced levels in a lasr mutant compared with the wild-type  <cit> .
our chemical supplementation experiments indicate that neither hhq nor hnq modulate wrinkling.
this implies that one of the other less-well characterized series a congeners have a role in this process, further expanding the various cellular functions of aqs in p. aeruginosa.
a detailed investigation utilizing liquid chromatography/mass spectrometry along with chemical synthesis would be able to identify the compound in question.
pqse, a putative regulator encoded by the pqsa-e operon whose precise function is not known, is unlikely to have a role in aq-mediated colony wrinkling, because pqsa-d expression in a lasr pqsr mutant that does not express pqse was sufficient to induce wrinkling .
interestingly, in burkholderia pseudomallei the lack rather than the overproduction of the series a congener hhq results in a wrinkly colony phenotype  <cit> .
in addition, aq signal overproduction has previously been shown to induce autolysis in p. aeruginosa populations, forming plaques that result in characteristic translucent zones in colonies  <cit> , different from those we observed.
autolysis appears to be mediated by pqs rather than a series a congener  <cit> .
taken together, our data can be rationalized as follows: in the wild-type, both series a and series b congeners are produced as lasr activates pqsr and pqsh.
in the lasr mutant, series a congeners accumulate and the series a to series b ratio increases because of  reduced pqsh expression and  presumably lasr-independent expression of pqsr  <cit>  resulting in continued activation of pqsa-e. in this case, one or more series a congeners activate pel production postranscriptionally in a pqsr-independent fashion, manifesting in a wrinkled phenotype.
colony morphology would be affected by a combination of pel-dependent and independent mechanisms, as lasr-mediated wrinkling was only partially pel-dependent .
the particular aq compound could alter colony morphology by binding to a novel receptor protein or through membrane interactions.
while both pqs and hhq have been shown to associate with outer membrane lps, only pqs induces vesicle formation  <cit> .
such distinct interactions might have direct macroscopic effects on colony morphology, but might also alter the periplasmic environment in a way that affects the signaling status of receptor proteins in the cytoplasmic membrane.
posttranscriptional regulation of pel could be mediated via a transmembrane signaling pathway that involves the lads/rets/gacs/gaca two-component system, the rna-binding protein rsma and the small rna rsmz  <cit> .
pel translation has been shown to be repressed by the rna-binding protein rsma  <cit> .
authors' contributions
ms and rg designed and rg performed the experiments.
rg and ms analyzed and interpreted the results.
rg drafted the manuscript and ms critically revised it.
all authors read and approved the final manuscript.
supplementary material
additional file 1
table s <dig>  oligonucleotides for deletion, overexpression, and reporter fusion constructs.
click here for file
additional file 2
table s <dig>  list of insertion mutants with the location of the transposon insertion.
click here for file
acknowledgements
we thank roberto kolter for providing p. aeruginosa strain zk <dig> and pel, psl mutants, and we thank colin manoil for providing plasmid plg <dig>  we acknowledge steve diggle, paul williams and marvin whiteley for their kind gift of pqs, hnq and hhq signals, respectively.
we also thank matt parsek and kelly colvin for their suggestions.
this work was supported by nih grant ai <dig> and by start-up funds from oregon state university .

 pseudomonas aeruginosa is an important opportunistic human pathogen. it is known for its ability to inhabit diverse habitats ranging from soil to immunocompromised individuals. in these environments, it can adopt either a planktonic or a surface-associated biofilm lifestyle. biofilms, structured surface-associated microbial communities, are of considerable interest as they constitute an important survival strategy in infections. p. aeruginosa forms different types of biofilms depending on the environment. in static liquid culture it forms pellicles at the air-liquid interface, under flow it can form solid surface-associated biofilms and on solid agar medium it forms colonies. colonial growth is an easy and commonly used assay to study development of multicellular structures like biofilms. biofilms are encased in a matrix composed of exopolysaccharide, but also extracellular dna, proteins, rna and ions. there are two main eps in non-mucoid p. aeruginosa, pel and psl. pel is glucose rich whereas psl is galactose and mannose rich. p. aeruginosa strain pa only contains pel while strains pao and zk contain both pel and psl. all of these strains are clinical isolates that differ in their aggregative behavior. while strains pa and pao are the most commonly used laboratory strains, strain zk with its autoaggregative phenotype is believed to be the most representative among clinical strains. quorum sensing is a cell density-dependent mechanism of bacterial communication that coordinates other group behaviors. p. aeruginosa has two complete acyl-homoserine lactone -based qs systems, las and rhl. they consist of the transcriptional regulators lasr and rhlr and the signal synthases, lasi and rhli, respectively. lasi and rhli catalyze the synthesis of n-3-oxododecanoyl-homoserine lactone and n-butryl-homoserine lactone, which bind and activate their cognate transcriptional regulators lasr and rhlr, respectively. both systems are arranged in a hierarchical manner with the las system controlling the rhl system. a third qs system in p. aeruginosa, pqs, is based on alkyl quinolones. this system connects both the las and rhl qs systems. it includes the transcriptional regulator pqsr, which positively regulates the expression of the pqsa-e operon. pqsa-d enzymes are involved in the synthesis of 4-hydroxyalkyl quinolines. this class of compounds is converted to dihydroxyquinolines by a monoxygenase encoded by the pqsh gene. the most prominent series a congeners are 4-hydroxy-2-heptyl quinoline and 4-hydroxy-2-nonyl quinoline, and the most prominent series b congener is -dihydroxy-2-heptyl quinoline, due to their established roles as cell-cell signaling molecules. hhq/hnq and pqs bind pqsr with low and high affinity, respectively, and are capable of activating the protein. lasr positively regulates aq production by upregulating pqsr and pqsh transcription, although under certain culture conditions, aq can also be produced in the absence of a functional las system. the rhl system, in turn, represses pqsr and pqsa-e expression. the aq biosynthetic enzymes enable p. aeruginosa to produce more than distinct aq molecules. together, the three qs systems, las, rhl, and pqs, regulate > 5% of the p. aeruginosa genome. several studies have investigated the contribution of each qs system to biofilm formation. a functional las system is required for formation of highly structured ssa biofilm communities in p. aeruginosa pao. the las system influences biofilm matrix formation and activation of pel eps. in another study, the las system was shown to indirectly inhibit pel expression through weak activation of the tyrosine phosphatase tpba. the rhl qs system contributes to maintenance of biofilm architecture through production of rhamnolipid surfactants. the pqs system in turn is implicated in autolysis and maintaining biofilm integrity as a consequence of edna release. in addition, the contribution of qs to biofilm formation is modulated by environmental factors such as nutritional cues. taken together, the role of qs in biofilm formation is multifactorial. our recent work suggested yet another connection between qs and eps production. we showed by chromatin immunoprecipitation-microarray analysis and electrophoretic mobility shift assay that lasr binds to the putative promoter region of the psl eps operon. this finding led us to investigate in more detail how lasr mutation affects eps production and colony biofilm formation. a lasr mutant of p. aeruginosa strain zk exhibited a pronounced wrinkled colony morphology at 37°c suggesting a possible link between las qs and psl expression. however, we found that the wrinkled phenotype is pel rather than psl-dependent. subsequent suppressor mutagenesis in the lasr mutant background implicated the involvement of the pqs pathway. phenotypic analysis and quantitation of aq levels by thin-layer chromatography of several qs mutants revealed that a series a congener, likely other than hhq or hnq, modulates the structural organization of a colony. this study broadens the functional significance of aq production by p. aeruginosa. our recent work suggested yet another connection between qs and eps production. we showed by chromatin immunoprecipitation-microarray analysis and electrophoretic mobility shift assay that lasr binds to the putative promoter region of the psl eps operon. this finding led us to investigate in more detail how lasr mutation affects eps production and colony biofilm formation. a lasr mutant of p. aeruginosa strain zk exhibited a pronounced wrinkled colony morphology at 37°c suggesting a possible link between las qs and psl expression. however, we found that the wrinkled phenotype is pel rather than psl-dependent. subsequent suppressor mutagenesis in the lasr mutant background implicated the involvement of the pqs pathway. phenotypic analysis and quantitation of aq levels by thin-layer chromatography of several qs mutants revealed that a series a congener, likely other than hhq or hnq modulates the structural organization of a colony. this study broadens the functional significance of aq production by p. aeruginosa. methods bacterial strains and growth conditions strains and plasmids are listed in table we used three strains of p. aeruginosa in this study, namely the widely used clinical isolates pao and pa and the more recent clinical isolate zk. bacterial cultures were grown at 22°c and 37°c as specified. lennox broth or tryptone broth were used for routine culturing. tryptic soy broth was used for flow-cell biofilm assays. where appropriate, antibiotics were added to the growth media as follows: tetracycline and gentamicin, μg/ml for p. aeruginosa and μg/ml for escherichia coli; carbenicillin, μg/ml for p. aeruginosa; ampicillin, μg/ml for e. coli. strain or plasmid strain and plasmid constructions deletion mutants were constructed using the strategy of hoang et al.. zk lasr and lasi mutants were generated by introducing the previously constructed allelic exchange plasmids pex Δlasr and pex Δlasi, respectively, into the parent strain and selecting on lb agar containing nalidixic acid and tetracycline. double cross-over recombinants were further selected on lb plates supplemented with 5% sucrose. the pqsh and tbpa in-frame deletions were constructed using soe-pcr. the respective primers are listed in additional file 1: table s the deletion constructs obtained from soe-pcr were digested with the appropriate restriction enzymes and ligated into equally digested pex. the resulting constructs pex Δpqsh and pex Δtpba were transformed into e. coli sm mating with p. aeruginosa zk and appropriate selection as discussed above yielded pqsh and tpba deletion mutants. the pela lasr and psld lasr double mutants were constructed by generating an in-frame lasr deletion in pela and psld mutant backgrounds, respectively. a lasr pqsh double mutant was constructed by pqsh deletion in a lasr mutant background. proper construction of deletion mutants was confirmed by pcr amplification of chromosomal dna. the plasmid prg was constructed by amplifying a kb region containing the pqsa-d genes using appropriate primers and cloning between the psti and hindiii restriction sites of the pucp vector. colony biofilm assay bacterial cultures were grown overnight in lb at 37°c. the overnight culture was diluted to an optical density of in tryptone broth and μl of the diluted culture was spotted onto congo red plates. the congo red medium contained tryptone, granulated agar, congo red, and coomassie brilliant blue r. the plates were wrapped with aluminum foil and incubated at 37°c for 3- days. for bacterial strains containing plasmid plg or prg carbenicillin was added to the medium. chemical supplementation 3oc12-hsl was added to congo red plates buffered with μm 3- propanesulfonic acid at a final concentration of μm. pyocyanin was added to congo red plates at a final concentration of μm. hhq and hnq were added to mops-buffered congo red plates at a final concentration of μm or directly to the bacterial inoculum at final concentrations of and μm. the respective solvents ethyl acetate, dimethyl sulfoxide, and methanol were used as controls. pel'-lacz-reporter construction and β-galactosidase measurements a bp promoter region of the pel operon was amplified from the zk strain using the primers listed in additional file 1: table s and cloned upstream of the lacz gene in the integration vector mini-ctx-lacz. the resulting plasmid prg was then inserted into the chromosome of the wild-type and the lasr mutant as described. as a control, the mini-ctx-lacz parent vector was also integrated into the genome. the colonies of the zk wild-type and the lasr mutant grown on congo red plates at 37°c were used to measure β-galactosidase levels. a colony was cut out on the 3rd, 4th, and the 5th day and suspended in ml of mm phosphate buffer, ph, in a ml conical tube. cells were lysed by sonication. the total protein was estimated by bradford assay. the sonicated sample was centrifuged at 4°c for min. the resulting supernatant was used to measure β-galactosidase activity as described previously. pellicle biofilm assay cultures were inoculated in tryptone broth at an od of and incubated at 22°c and 37°c without shaking. after and h, pellicle formation was observed at the air-liquid interface. microtiter plate biofilm assay biofilm formation in a microtiter format was assayed as described. overnight cultures of the wild-type and the lasr mutant grown in lb broth at 37°c were diluted 1: in tryptone broth. one hundred and fifty μl of the diluted culture was added to 96-well polystyrene microtiter plates and incubated at 22°c and 37°c without shaking for and h. microtiter plates were rinsed in running hot water. adherent cells were then stained with 1% crystal violet for min. the microtiter plate was again rinsed in running hot water. ethanol was added to each dry well and the samples were allowed to stand for min. absorbance was measured at nm. flow-cell biofilm assay biofilms were grown at 37°c in flow chambers. the system was assembled as described. the cultures for inoculation were prepared from mid-exponential phase tsb cultures grown at 37°c. the cultures were diluted to an od of in 1: diluted tsb medium and injected into the flow cell. flow was initiated after h. the diluted tsb was supplied at a flow rate of μl/min using a peristaltic pump. images were taken when biofilms had matured with an inverted zeiss lsm zeta confocal laser scanning microscope using a 63x oil immersion lens. the manufacturer's software and adobe photoshop were used for image processing. suppressor mutagenesis for transposon mutagenesis, biparental matings were set up between the e. coli donor and the p. aeruginosa recipient strain as described. the suicide plasmid plm carries a minitn transposon. the transposon insertion mutants were selected on lb agar plates containing gentamicin and nalidixic acid. colonies were picked manually and patched onto rectangular lb plates containing gentamicin in a 96-well format. plates were incubated at 37°c for one day and then replica-plated onto rectangular congo red plates using a 96-well-pin replicator. the zk wild-type and the lasr mutant were included as controls. these plates were incubated for 3- days at 37°c. candidate revertants exhibiting a smooth colony morphology identical to the wild-type were streaked for isolated colonies and subjected to a second screen. this screen involved performing the original colony biofilm assay as described earlier. mutants which again showed a smooth phenotype were considered to be true revertants. mapping of transposon insertions genomic dna was isolated from the selected transposon mutants and was digested with ncoi. the transposon does not contain an ncoi restriction site and has an r6k origin of replication. the digested dna was self-ligated with t dna ligase and electroporated into chemically competent e. coli s17-1/λpir. plasmid dna was isolated from gentamicin-resistant colonies and was sequenced using the tn specific primer tnprl17-. transposon insertions were mapped by comparing sequences to a pseudomonas protein database using blastx. overexpression of pqsa-e the appropriate strains were transformed with plasmid plg and prg carrying the pqsa-e operon and pqsa-d operon under the control of native and constitutive promoters, respectively, or with pucp, the parent vector from which plg and prg were derived. thin-layer chromatography samples for tlc analysis were prepared from 3- day-old colonies. two colonies of each strain grown on the same plate were cut out from the agar with minimum possible agar contamination. one colony was used for total protein estimation and the other for aq extraction. total protein was estimated by bradford assay as described earlier for β-galactosidase measurements. for aq extraction, a colony was harvested and suspended in ml methanol, homogenized with a tissue tearor, and allowed to stand for min. the suspension was centrifuged for min at r.p.m. at 4°c. the supernatant was filtered through a μm syringe filter and the filtrate was collected in glass vials prewashed with acetone. the samples were then air-dried, reconstituted in μl of methanol and transferred to ml glass vials. they were again air-dried and finally reconstituted in μl of methanol. tlc plates were prepared and samples were run as described. five μl of the sample, μl of the standards-pqs, and hhq were used. aq levels were estimated in the wild-type and the lasr mutant by densitometric analysis of relative spot intensities using imagequant tl software from two independent experiments.  a zk lasr mutant forms wrinkly colonies we investigated the effect of a lasr mutation on colony morphology as an indicator of matrix production. a wrinkled colony phenotype is generally associated with increased eps production and biofilm formation. our agar medium also contained congo-red, which may stain colonies overproducing eps, but is not always a reliable indicator, especially at 37°c. we therefore focused on colony wrinkling. we grew the wild-type and lasr mutants of three p. aeruginosa strains, namely widely used strains pao and pa and the autoaggregative strain zk, on agar plates for days at 37°c and at 22°c. growth conditions are identical to those previously used to investigate eps-dependent colony morphology. we did not observe any significant differences in rugosity between the pao wild-type and lasr mutant strains at either temperature. however, the colonies of the wild-type and the lasr mutant of strains pa and zk showed striking differences. a pa lasr mutant formed a flat, smooth colony as compared to the wrinkled wild-type phenotype at 22°c. on the contrary, a zk lasr mutant formed a distinctive wrinkled colony at 37°c while the wild-type formed a smooth colony. at room temperature, the morphological difference between the wild-type and the zk lasr mutant was not as pronounced. a positive regulatory link between las qs, pel transcription and colony morphology has already been described in strain pa which only carries pel eps. the apparently reverse relationship between las qs and colony morphology at 37°c in strain zk, which harbors both pel and psl, was intriguing to us and is the focus of this study. to confirm that the observed phenotype is generally dependent on a non-functional las system, we also constructed a zk lasi in-frame deletion mutant. a zk lasi mutant showed a well defined wrinkled colony like the lasr mutant at 37°c. supplementation of the lasi mutation with exogenous 3oc12-hsl signal virtually restored the smooth wild-type phenotype. this confirms that the las system is responsible for the wrinkled colony phenotype. we used the zk lasr mutant for further study. genetic analysis indicates involvement of pel rather than psl we performed mutational analysis to investigate whether pel or psl eps might cause wrinkling of the lasr mutant. we constructed pela lasr and psld lasr double mutants and compared their colony morphology to that of the lasr mutant and the wild-type parent. a pela lasr double mutant showed a nearly smooth colony phenotype while the psld lasr mutant showed a wrinkled phenotype like the lasr mutant. we evaluated the contribution of pel alone by comparing the colony morphology of a pela mutant to the wild-type. the pela colony phenotype was indistinguishable to that of the wild-type. the partial loss of wrinkles in a pela lasr double mutant therefore indicates inhibition of pel by lasr. to determine whether inhibition is at the transcriptional level, we measured pela transcription in the wild-type and the lasr mutant using a pela'-lacz transcriptional fusion inserted at a neutral chromosomal site. we harvested colonies after and days, because a zk lasr mutant begins to show wrinkling at day we found no difference in pela transcription in the wild-type and the lasr mutant. this indicates that pel regulation is at the posttranscriptional level. we attempted to investigate this possibility by quantifying eps; however, we were unable to perform an eps composition and linkage analysis because of insufficient amounts of purified eps extracted from colonies required for such analysis. investigation of other factors associated with pel and the wrinkled colony phenotype we investigated the role of phenazines and of the tyrosine phosphatase tpba in the observed wrinkled phenotype of a zk lasr mutant as both modulate structural organization of p. aeruginosa pa colony biofilms. we examined the relationship between phenazine deficiency and the wrinkled phenotype through addition of pyocyanin to the agar medium. pyocyanin supplementation did not result in loss of wrinkles in the lasr mutant. inhibition of tpba in strain pa has been shown to enhance pel expression at 37°c, resulting in a wrinkled colony phenotype. we therefore constructed a tpba mutant in the zk background and examined colony morphology. the tpba mutant remained as smooth as the wild-type. these results indicate neither pyocyanin nor tpba are responsible for the wrinkled phenotype of the zk lasr mutant. hydrated lasr mutant biofilms do not show altered architecture the involvement of pel in the wrinkled colony morphology of the zk lasr mutant suggested that it might exhibit generally altered biofilm architecture. we investigated pellicle formation of standing cultures as well as biofilm formation in microtiter plates and flow-cells. flow-cell biofilms of the wild-type and the lasr mutant after days of growth are shown in figure neither assay revealed any differences between the two strains. this is consistent with recent results by colvin et al., who also found no defect in attachment or biofilm development for a pel mutant of strain pao. there is a difference in the degree of hydration in the three biofilm assays we employed. submerged flow-cell biofilms are fully saturated and hydrated, pellicles and microtiter plate biofilms that form at the air-liquid interface are somewhat less hydrated, whereas colonies on agar are the least hydrated. it is possible that the observed phenotype only manifests under conditions of low hydration. suppressor mutagenesis implicates the pqs pathway transposon mutagenesis was performed in the zk lasr mutant background to identify the regulatory link between the las qs system and colony morphology. around mutants were screened for reversion to a smooth phenotype. we identified mutants, and mapped transposon insertions in. we found transposon insertions in the pqsa-d genes of the aq biosynthesis operon and one insertion in the gene encoding the transcriptional regulator pqsr that activates pqsa-e expression. given the large fraction of hits, the role of the pqs operon was apparent even without mapping the remaining transposon mutants. we did not identify any insertions in pqsh, which promotes the conversion of series a to series b congeners nor in pqse, which encodes a putative global regulator. surprisingly, we also did not identify a transposon insertion in the pel operon, although our data in figure show that the lasr pel mutant forms a smooth colony. we found that this mutant displayed very slight wrinkling under the conditions employed for the high throughput screen, in which our primary focus was on the identification of the most obvious smooth revertants. the wrinkly phenotype of the lasr pqsa::tn suppressor mutant could be restored by introducing plasmid plg, which expresses the pqsa-e operon from its native promoter. this verifies that the products of this operon are indeed responsible for the wrinkled phenotype of the lasr pqsa:tn mutant. to investigate whether pqsa-d dependent wrinkling of the lasr mutant is through pqsr, we introduced plasmid prg into the lasr pqsr:tn mutant. this plasmid constitutively expresses the pqsa-d operon from a lac promoter. the lasr pqsr:tn mutant colony was as wrinkly as that of the lasr mutant indicating that this phenotype is independent of pqsr. a series a aq congener causes the wrinkled phenotype the previous finding that lasr mutants overproduce series a congeners and the fact that we did not find any insertion in the pqsh gene indicate that series a congeners rather than series b congeners are responsible for the wrinkled phenotype. we therefore examined this notion further by correlating colony morphology and aq production, as measured by tlc, in a number of mutant strains. tlc allowed us to distinguish between high-abundance series a and b congeners. this assay was developed and has been optimized to detect pqs and hhq, owing to their important roles in cell-cell signaling. compounds within each series, especially c and c congeners, are not well separated, and low-abundance compounds may not be detectable. we included the wild-type, the lasr mutant, and the lasr pqsa::tn suppressor mutant in this analysis. in addition, we constructed a pqsh single mutant and a lasr pqsh double mutant in the zk background. if a series a congener caused wrinkling, then a lasr pqsh mutant should still be wrinkly, and a pqsh mutant would also be wrinkly if a series a congener accumulates. indeed, the degree of wrinkling generally correlated well with the amount of series a congener produced, in the order lasr-pqsa::tn < wt <pqsh <lasr and lasr pqsh. the wrinkly lasr mutant and the lasr pqsh double mutant produce the most, while the smooth wild-type produces considerably less. the fact that the wrinkly lasr pqsh mutant does not produce series b congeners implies a role for a series a congener. it is not clear why the pqsh single mutant does not overproduce series a congeners as previously shown for strain pa. it is possible that pqsa-e expression is reduced because indirect inhibition by the las system via the rhl system and the lack of the strong inducer pqs have a larger effect in the zk background. regardless, the partially wrinkly phenotype of the pqsh mutant indicates that in addition to absolute abundance, the ratio of series a to b congeners may also be important. densitometric analysis of wild-type and lasr mutant tlc spot intensities indeed shows that the series a to series b ratio is reciprocal in the two strains. two series a compounds, the pqs precursor hhq and hnq, have been shown to be overproduced in a lasr mutant. to examine whether one of these compounds is responsible for the wrinkly morphology of the lasr mutant, we added them to the lasr pqsa suppressor mutant. exogenous addition to the agar medium or directly to the bacterial inoculum did not result in any change in colony morphology. it is possible that diffusible aq compounds are unable to enter cells in sufficient quantity, or that another less well-characterized series a congener is responsible for the observed phenotype. because exogenous complementation with diffusible aq has been successful in the past, we favor the latter.  in this study, we investigated the effect of las qs on biofilm formation and structure using a colony biofilm approach. this work was motivated by our recent global position analysis of lasr, which showed that this regulator directly binds to the psl polysaccharide promoter. while we were unable to demonstrate the significance of this finding in the present study, we established a novel connection between las qs and the other major p. aeruginosa eps, pel. in particular, we provide genetic evidence suggesting that the lasri system represses pel. we do not have any other independent evidence of this regulatory link as eps composition analysis was unsuccessful. las qs also only affected colonial morphology and did not affect biofilm formation in other relevant assays, including microtiter plate, pellicle, and flow-cell. it is conceivable that water availability is responsible for the conditionality of the observed phenotype. it has previously been shown that lasri induces pel expression in strain pa at room temperature but not at 37°c. this regulation is probably indirect and mediated via an unknown transcriptional regulator. our finding that lasri can also repress pel expression in strain zk at 37°c, a temperature relevant to infection, raises the intriguing possibility that qs may trigger dissolution of clinical biofilms. this would be analogous to other bacterial pathogens like vibrio cholerae and staphylococcus aureus. results with the particular strain chosen, zk are significant, because the autoaggregative behavior of this strain under some environmental conditions appears most representative among clinical and environmental isolates of p. aeruginosa. the observed differences in the colony phenotype of different pseudomonas strains might be attributed to the presence or absence of a particular eps locus or regulatory variability in strains with identical eps loci. our second major finding is that las qs mediates colony morphology via aq signaling. phenotypic analysis along with aq signal quantitation by tlc suggested that a series a congener is involved. pqsa-d produce at least different compounds within this series. of these, hhq and hnq have been shown to accumulate in a pao lasr mutant. other prominent aqs, -dihydroxyquinoline and 2-heptyl-4-hydroxyquinoline n-oxide, that require some of the enzymes encoded by pqsa-d, but are not pqsh substrates, show reduced levels in a lasr mutant compared with the wild-type. our chemical supplementation experiments indicate that neither hhq nor hnq modulate wrinkling. this implies that one of the other less-well characterized series a congeners have a role in this process, further expanding the various cellular functions of aqs in p. aeruginosa. a detailed investigation utilizing liquid chromatography/mass spectrometry along with chemical synthesis would be able to identify the compound in question. pqse, a putative regulator encoded by the pqsa-e operon whose precise function is not known, is unlikely to have a role in aq-mediated colony wrinkling, because pqsa-d expression in a lasr pqsr mutant that does not express pqse was sufficient to induce wrinkling. interestingly, in burkholderia pseudomallei the lack rather than the overproduction of the series a congener hhq results in a wrinkly colony phenotype. in addition, aq signal overproduction has previously been shown to induce autolysis in p. aeruginosa populations, forming plaques that result in characteristic translucent zones in colonies, different from those we observed. autolysis appears to be mediated by pqs rather than a series a congener. taken together, our data can be rationalized as follows: in the wild-type, both series a and series b congeners are produced as lasr activates pqsr and pqsh. in the lasr mutant, series a congeners accumulate and the series a to series b ratio increases because of reduced pqsh expression and presumably lasr-independent expression of pqsr resulting in continued activation of pqsa-e. in this case, one or more series a congeners activate pel production postranscriptionally in a pqsr-independent fashion, manifesting in a wrinkled phenotype. colony morphology would be affected by a combination of pel-dependent and independent mechanisms, as lasr-mediated wrinkling was only partially pel-dependent. the particular aq compound could alter colony morphology by binding to a novel receptor protein or through membrane interactions. while both pqs and hhq have been shown to associate with outer membrane lps, only pqs induces vesicle formation. such distinct interactions might have direct macroscopic effects on colony morphology, but might also alter the periplasmic environment in a way that affects the signaling status of receptor proteins in the cytoplasmic membrane. posttranscriptional regulation of pel could be mediated via a transmembrane signaling pathway that involves the lads/rets/gacs/gaca two-component system, the rna-binding protein rsma and the small rna rsmz. pel translation has been shown to be repressed by the rna-binding protein rsma. authors' contributions ms and rg designed and rg performed the experiments. rg and ms analyzed and interpreted the results. rg drafted the manuscript and ms critically revised it. all authors read and approved the final manuscript. supplementary material additional file 1 table s oligonucleotides for deletion, overexpression, and reporter fusion constructs. click here for file additional file 2 table s list of insertion mutants with the location of the transposon insertion. click here for file acknowledgements we thank roberto kolter for providing p. aeruginosa strain zk and pel, psl mutants, and we thank colin manoil for providing plasmid plg we acknowledge steve diggle, paul williams and marvin whiteley for their kind gift of pqs, hnq and hhq signals, respectively. we also thank matt parsek and kelly colvin for their suggestions. this work was supported by nih grant ai and by start-up funds from oregon state university.
a lasr mutant exhibited wrinkled colony morphology at 37°c in contrast to the smooth colony morphology of the wild-type. mutational analysis indicated that wrinkling of the lasr mutant is dependent on pel, encoding a biofilm matrix exopolysaccharide. the effect of qs on biofilm formation is influenced by various genetic and environmental factors. here, we used a colony biofilm assay to study the effect of the central acyl-hsl qs regulator, lasr, on biofilm formation and structure in the representative clinical p. aeruginosa isolate zk taken together, these results indicate that the las qs system represses pel and modulates colony morphology through a 4-hydroxyalkyl quinoline in a pqsr-independent manner, ascribing a novel function to an aq other than pqs in p. aeruginosa. acyl-homoserine lactone and alkyl quinolone based quorum-sensing systems are important for pseudomonas aeruginosa virulence and biofilm formation. most importantly, the lasr pqsh double mutant displayed wrinkly morphology without producing any -dihydroxyalkyl quinolines. measurement of aq in the wild-type, the lasr pqsa::tn suppressor mutant as well as the defined lasr, pqsh, and lasr pqsh mutants showed a correlation between 4-hydroxyalkyl quinoline levels and the degree of colony wrinkling. suppressor mutagenesis and complementation analysis implicated the aq signaling pathway as the link between las qs and colony morphology. constitutive expression of pqsa-d genes in a lasr pqsr::tnmutant showed that colony wrinkling does not require the aq receptor pqsr.
 acyl-homoserine lactone and alkyl quinolone based quorum-sensing systems are important for pseudomonas aeruginosa virulence and biofilm formation. the effect of qs on biofilm formation is influenced by various genetic and environmental factors. here, we used a colony biofilm assay to study the effect of the central acyl-hsl qs regulator, lasr, on biofilm formation and structure in the representative clinical p. aeruginosa isolate zk  a lasr mutant exhibited wrinkled colony morphology at 37°c in contrast to the smooth colony morphology of the wild-type. mutational analysis indicated that wrinkling of the lasr mutant is dependent on pel, encoding a biofilm matrix exopolysaccharide. suppressor mutagenesis and complementation analysis implicated the aq signaling pathway as the link between las qs and colony morphology. in this pathway, genes pqsa-d are involved in the synthesis of 4-hydroxyalkyl quinolines, which are converted to -dihydroxyalkyl quinolines by the product of the lasr-dependent pqsh gene. measurement of aq in the wild-type, the lasr pqsa::tn suppressor mutant as well as the defined lasr, pqsh, and lasr pqsh mutants showed a correlation between 4-hydroxyalkyl quinoline levels and the degree of colony wrinkling. most importantly, the lasr pqsh double mutant displayed wrinkly morphology without producing any -dihydroxyalkyl quinolines. constitutive expression of pqsa-d genes in a lasr pqsr::tnmutant showed that colony wrinkling does not require the aq receptor pqsr.  taken together, these results indicate that the las qs system represses pel and modulates colony morphology through a 4-hydroxyalkyl quinoline in a pqsr-independent manner, ascribing a novel function to an aq other than pqs in p. aeruginosa. quorum sensingpseudomonas aeruginosacolonyalkylquinoloneacyl-homoserine lactoneexopolysaccharidebiofilm 