BACKGROUND
streptococcus agalactiae, or group b streptococcus infection, emerged in the 1970s as the leading cause of infectious disease in infants, and remains one of the leading causes of neonatal sepsis and pneumonia, sometimes leading to meningitis  <cit> .
vertical transmission to the infant during birth accounts for 75 % of gbs colonisation of neonates  <cit> , leading to either early onset  or late onset gbs disease .
early onset gbs infection often presents by the twelfth hour of life and up to 89 % of cases are diagnosed in the first day of life  <cit> .
as a result of significant improvements in diagnosis and disease prevention, the rate of gbs infections, both early and late onset, has significantly reduced, and the mortality rate in neonates has dropped from 50 % to between  <dig> and 6 %, though for infected preterm infants it can be significantly higher  <cit> .
gbs infection in neonates, particularly if it leads to meningitis, can have significant consequences that can lead to lifelong disabling conditions, including vision impairment, hearing loss and intellectual disabilities  <cit> .
the genital tracts of approximately 25 % of pregnant women are colonised with gbs  <cit> .
this colonisation usually does not become pathogenic to the woman and only becomes problematic in the perinatal setting.
early onset gbs infection can be transmitted to the neonate during birth as it travels through the birth canal of a colonised woman and can subsequently cause infection in the neonate  <cit> .
in some cases it can also be transmitted by ascending infection to the foetus if there is premature rupture of the membranes, puerperal endometritis or if the woman develops chorioamnionitis  <cit> , though, these conditions are relatively rare.
it is interesting to note that gbs was a leading cause of fatal puerperal sepsis prior to the introduction of penicillin  <cit> .
less is known about the transmission and pathogenesis of gbs in late onset disease.
in one study, 64 % of infants with late onset disease were born to gbs positive mothers and the other 36 % are thought to be made up of cases of environmentally acquired gbs  <cit> .
intrapartum chemoprophylaxis seems to have little effect on late onset disease attack rates.
there are two main schools of thought on the prevention of invasive early onset gbs infection.
some organisations, for example, the royal college of obstetricians and gynaecologists  recommends risk-based screening of pregnant women, while others, including the centres for disease control and prevention  recommend universal screening of pregnant women.
the rcog do not recommend routine screening for the identification of gbs, which is incidentally found when testing for other infections such as urinary tract infection, or when testing a vaginal swab from a woman with suspected vaginitis  <cit> .
the current cdc guidelines for gbs screening recommend that pregnant women have both rectal and lower vaginal swabs screened using culture or nucleic acid testing.
typical turnaround times for the current gold standard method for gbs detection involving culture from swabs, are between  <dig> and 72 h depending on the method employed in the laboratory where the testing is to be done and additional time may be required for antimicrobial susceptibility testing.
the cdc, in their  <dig> gbs report, state that a rapid molecular test to determine gbs colonisation status would be beneficial in the perinatal setting, for women with an unknown gbs colonisation status, to reduce the likelihood of invasive gbs infection of the neonate, providing the assay is sufficiently sensitive and specific  <cit> .
recombinase polymerase amplification , a rapid, highly sensitive and specific in vitro isothermal nucleic acid amplification technology, offers an ideal approach to gbs screening in near-patient settings.
rpa-based tests could be used both at the cdc recommended  <dig> to 37 week gestation screen as well as for screening women who are in labour with an unknown gbs status .
rpa utilises a number of enzymes, including recombinases and strand-displacing dna polymerases, to perform dna or rna amplification  <cit> .
rpa results are generated very rapidly, typically in under 15 min, and often in under  <dig>  and rpa is able to detect even very few copies of dna  <cit> .
a recently reported rpa assay for gbs had a limit of detection of  <dig> genome copies, with positive results available within 8 min from the start of the reaction  <cit> .
rpa has many features which makes it more attractive than pcr-amplification based tests and ideal for point-of-care nad testing, such as are required to screen pregnant women for gbs colonisation.
it does not require thermal cycling, with an optimum temperature range of 35–40 °c, thus negating the need for complex instrumentation.
as a result of the extremely rapid cycling times, results are available much more rapidly than achieved with pcr.
the objective of this study was to develop and optimise an rpa-based nucleic acid diagnostic test for gbs that can be performed in a wide variety of near-patient clinical settings, including labour and delivery wards.
the rpa test developed in this study targets the camp factor cfb gene, which is specific to gbs, and is therefore, ideal for development of a gbs-specific assay.
the analytical performance of the gbs rpa test was optimised and the assay was evaluated using clinical samples, and compared to a previously developed gbs real-time pcr assay  <cit> .
the results from these tests were correlated with the results of microbiological analyses of the samples.
methods
rpa reactions
each rpa reaction contained 2 μl of dna in a final reaction volume of 50 μl.
master mix was prepared by adding  <dig>  μl primer/probe mix  in rehydration buffer,  <dig>  μl pcr grade h2o, 4 μl magnesium acetate , 2 μl template dna per reaction at the required concentration.
for specificity testing this concentration was 1 ×  <dig> genome copies of dna from each isolate per reaction.
for limit of detection experiments defined copy numbers ranging from  <dig> to  <dig>  were tested.
the kit used in this study was the custom exo kit from twistdx.
all reagents were provided by twistdx.
all rpa experiments were performed at 40 °c on the twista® instrument  device using a reaction time of 20 min.
incubations included a manual mixing step  at 4 min incubation.
for negative or no template controls  these reactions were prepared as normal substituting the target dna with an equal volume of molecular grade water.table  <dig> rpa primer and probe sequences
real time pcr reactions
a previously developed real time pcr assay for detection of gbs  <cit>  was used to benchmark the rpa assay.
the final reaction  contained 2 μl lc faststart dna master hybprobe  5 mm mgcl <dig>  500nm forward primer, 500nm reverse primer, 200nm each of a fluorescently labelled hybridisation probe pair , 10 μl pcr grade water and 2 μl dna, at the required concentration.
for specificity testing this concentration was 1 ×  <dig> genome copies of dna from each isolate.
for limit of detection experiments defined copy numbers ranging from  <dig> to  <dig>  were tested.
thermocycling conditions consisted of 95 °c for  <dig> mins, and 50 cycles of 95 °c for 10 s 50 °c for 15 s and 72 °c for 10 s. reactions were carried out on the lightcycler® carousel-based system .
organisms used for inclusivity and exclusivity testing
s. agalactiae isolates used to confirm the inclusivity of the assay are listed in table  <dig>  organisms used to confirm exclusivity of the assay are listed in tables  <dig> and  <dig>  dna was extracted manually from cultures using the qiagen blood and tissue kit.
dna was quantified using the qubit analyser .
1 ×  <dig> genome copies of dna from each isolate were tested per reaction.
dilutions of the target dna for limit of detection studies were prepared in molecular grade water.table  <dig> organisms tested to confirm the inclusivity of the rpa assay
s. agalactiae
s. agalactiae
s. agalactiae
s. agalactiae
s. agalactiae
s. agalactiae
s. agalactiae
s. agalactiae
s. agalactiae
s. agalactiae
s. agalactiae
s. agalactiae
s. agalactiae
s. agalactiae
s. agalactiae
s. agalactiae
s. agalactiae
bccm belgian coordinated collections of microorganisms
atcc american tissue culture collection
streptococcus anginosus
streptococcus dysgalactiae subsp.
equisimilis
streptococcus gordonii
streptococcus intermedius
streptococcus mitis
streptococcus mutans
streptococcus oralis
streptococcus parasanguinis
streptococcus pneumoniae
streptococcus pneumoniae
streptococcus pyogenes
streptococcus salivarius
dsmz german collection of microorganisms and cell culture
limit of detection of the assay
the limit of detection of the assay was determined by preparing known concentrations of gbs  dna and testing in the rpa assay.
eight replicates of concentrations equivalent to  <dig>   <dig>   <dig>   <dig> ,  <dig> ,  <dig> ,  <dig>  and  <dig>  genome copies in a 2 μl volume were tested in three independent experiments.
testing of clinical samples
one hundred and twenty four vaginal swab samples which had been stored at −20 °c in lysis buffer from the bd genohm™ lysis kit  were tested.
this crude lysate was originally prepared by re-suspending swabs in 1 ml of sample buffer.
of this, 400 μl was transferred into a lysis tube and lysed by mechanical disruption with silica beads according to the manufacturer’s instructions.
from this crude lysate 2 μl was added directly to either the rpa reaction or the real-time pcr reaction.
RESULTS
analytical specificity of the rpa-gbs assay
the inclusivity of the assay was determined by testing a panel of gbs isolates.
all isolates were tested in triplicate.
table  <dig> shows the results obtained, while representative rpa amplification curve graphs are shown in fig.
<dig>  all gbs strains tested were detected.
a positive signal  is detected automatically by the twista software.
the specificity of the assay was further challenged by testing a panel of closely related streptococcus species.
no cross-reaction was observed .
finally a panel of organisms associated with the site of infection were tested in duplicate.
no cross-reactivity was observed .fig.
<dig> rpa amplification curves obtained from a panel of gbs isolates tested with the rpa gbs assay.
all isolates, listed in table  <dig>  were tested in triplicate.
a shows amplification curves obtained for isolates bccm  <dig>   <dig>  and bccm <dig>  b shows amplification curves obtained for isolates bccm  <dig>   <dig>  and bccm <dig>
fig.
<dig> rpa results obtained when a streptococcus genus exclusivity panel, listed in table  <dig>  was tested in the rpa gbs assay.
a, b and c show amplification curves for only for the positive control gbs  <dig>  demonstrating specificity of the assay for gbs
limit of detection
the limit of detection  of the rpa and real-time pcr assays was determined by testing eight replicates of each of the following concentrations,  <dig>   <dig>   <dig>   <dig> ,  <dig> ,  <dig> ,  <dig>  and  <dig>  genome copies of gbs bccm <dig> in three independent runs.
table  <dig> shows the hit rate analysis for the combined data from three independent experiments.
the lod of the rpa gbs assay was shown to be between  <dig>  and  <dig>  genome equivalents, while the lod of the real-time pcr gbs assay was shown to be in the range of  <dig>  and  <dig>  genome copies, indicating that the analytical sensitivity of both assays is comparable.
clinical performance evaluation
one hundred and twenty four samples were tested in the rpa-gbs assay.
for comparison the same sample set was also tested in the real-time pcr assay.
all samples had previously been cultured for gbs.
figure  <dig> shows representative rpa amplification curves obtained for some of the clinical samples tested.
eighty five samples were positive when tested by rpa and  <dig> samples were negative .
the same result was obtained when the samples were re-tested using real-time pcr .
the results were in full agreement with the pre-determined culture status of the samples.fig.
<dig> representative rpa amplification curves obtained for eight of the  <dig> clinical samples tested in the rpa gbs assay
discussion
the aim of this study was to demonstrate the application of rpa, a rapid amplification technology and its utility for detection of gbs in clinical samples.
the current gold standard for determination of gbs status involves swab culture for 48 h in selective media  <cit> .
the rpa assay described in this study can be completed in 10–15 min post sample processing and offers a viable alternative for rapid near patient testing.
the gene target used for development of the rpa-gbs assay was the cfb gene.
this gene is present in all gbs isolates  <cit>  and considering the sequence homegeniety among isolates is a good target for development of an inclusive molecular test.
following an extensive in-silico analysis of cfb gene sequences primers and probes for the rpa-gbs assay were designed according the criteria required for rpa amplification .
an extensive performance evaluation of the assay was carried out with respect to analytical specificity and sensitivity.
the inclusivity of the assay was determined by testing  <dig> gbs isolates, all of which were detected.
the exclusivity of the assay was determined by testing a panel of  <dig> organisms from the streptococcus genus.
none of these related organisms gave a signal in the assay.
the exclusivity of the assay was further challenged by testing a panel of  <dig> unrelated organisms commonly found in the gastrointestinal and genital tracts.
none of these organisms produced a signal, demonstrating the specificity of the rpa-gbs assay.
the limit of detection  of the assay was determined by testing replicates of varying concentrations of gbs dna.
this was done over three independent experiments.
hit rate analysis showed the limit of detection to be between six and  <dig> genome copies.
the performance of the rpa assay was compared to a previously published real-time pcr  <cit> .
the limit of detection of the real-time pcr assay was comparable to that of the rpa assay, with both achieving a limit of detection below  <dig>  genome copies., the performance of both assays when applied to clinical samples was identical.
some clinical samples which presumably had low cell counts also gave late onset times  in rpa assays and cp values in pcr assays  but were none the less detected, indicating that the limit of detection is in the acceptable range for application to clinical samples.
from the results presented here, the potential of rpa as a technology for use in a point of care  or near patient setting is clear.
furthermore, the rpa reagents can be lyophilised and because the reaction is isothermal, instrumentation requirements are relatively straightforward.
the reaction time is within the 10–15 min range, which offers the significant advantage of fast turnaround time compared to many other amplification technologies.
these characteristics of rpa technology mean that it would be ideally suited for the development of poc assays.
detection of gbs during labour is one application particularly suited to a point of care setting.
results are often required rapidly and the current gold standard culture method takes 48 h to turn around meaning that it is cannot be used in a labour ward setting.
even in relation to other standard molecular tests such as real-time pcr the results obtained with rpa are very promising.
in order to further optimise the rpa assay described here for full clinical validation, some additional development work would be required including optimisation of an appropriate sample preparation method, compatible with the rpa reaction, and the addition of either a process control or internal amplification control  to the assay as a target.
iacs used in rpa assays have been previously reported  <cit> .
CONCLUSIONS
we report here the evaluation of a specific, sensitive and rapid rpa assay for gbs detection in clinical samples.
the newly developed assay is specific for the target of interest and has a limit of detection between six and  <dig> genome copies.
the assay was compared to a previously published real-time pcr assay for gbs.
when applied to testing of clinical samples the performance of the rpa assay was identical to the real-time pcr assay with the added advantage that the assay time was reduced significantly to between  <dig> and 15 min.
the newly described rpa assay could potentially be utilised in a near-patient testing setting, allowing rapid clinical decisions to be made on the necessity to administer appropriate antibiotic treatment.
additional files
additional file 1: non-streptococcal species found at the site of infection used in rpa assay exclusivity testing.
additional file 2: clinical sample analysis results.
abbreviations
cpthe cp  value is the cycle at which fluorescence achieves a defined threshold.
it corresponds to the cycle at which a statistically significant increase in fluorescence is first detected
gbsgroup b streptococcus
pcrpolymerase chain reaction
rparecombinase polymerase amplification

 streptococcus agalactiae, or group b streptococcus infection, emerged in the 1970s as the leading cause of infectious disease in infants, and remains one of the leading causes of neonatal sepsis and pneumonia, sometimes leading to meningitis. vertical transmission to the infant during birth accounts for 75 % of gbs colonisation of neonates, leading to either early onset or late onset gbs disease. early onset gbs infection often presents by the twelfth hour of life and up to 89 % of cases are diagnosed in the first day of life. as a result of significant improvements in diagnosis and disease prevention, the rate of gbs infections, both early and late onset, has significantly reduced, and the mortality rate in neonates has dropped from 50 % to between and 6 %, though for infected preterm infants it can be significantly higher. gbs infection in neonates, particularly if it leads to meningitis, can have significant consequences that can lead to lifelong disabling conditions, including vision impairment, hearing loss and intellectual disabilities. the genital tracts of approximately 25 % of pregnant women are colonised with gbs. this colonisation usually does not become pathogenic to the woman and only becomes problematic in the perinatal setting. early onset gbs infection can be transmitted to the neonate during birth as it travels through the birth canal of a colonised woman and can subsequently cause infection in the neonate. in some cases it can also be transmitted by ascending infection to the foetus if there is premature rupture of the membranes, puerperal endometritis or if the woman develops chorioamnionitis, though, these conditions are relatively rare. it is interesting to note that gbs was a leading cause of fatal puerperal sepsis prior to the introduction of penicillin. less is known about the transmission and pathogenesis of gbs in late onset disease. in one study, 64 % of infants with late onset disease were born to gbs positive mothers and the other 36 % are thought to be made up of cases of environmentally acquired gbs. intrapartum chemoprophylaxis seems to have little effect on late onset disease attack rates. there are two main schools of thought on the prevention of invasive early onset gbs infection. some organisations, for example, the royal college of obstetricians and gynaecologists recommends risk-based screening of pregnant women, while others, including the centres for disease control and prevention recommend universal screening of pregnant women. the rcog do not recommend routine screening for the identification of gbs, which is incidentally found when testing for other infections such as urinary tract infection, or when testing a vaginal swab from a woman with suspected vaginitis. the current cdc guidelines for gbs screening recommend that pregnant women have both rectal and lower vaginal swabs screened using culture or nucleic acid testing. typical turnaround times for the current gold standard method for gbs detection involving culture from swabs, are between and 72 h depending on the method employed in the laboratory where the testing is to be done and additional time may be required for antimicrobial susceptibility testing. the cdc, in their gbs report, state that a rapid molecular test to determine gbs colonisation status would be beneficial in the perinatal setting, for women with an unknown gbs colonisation status, to reduce the likelihood of invasive gbs infection of the neonate, providing the assay is sufficiently sensitive and specific. recombinase polymerase amplification, a rapid, highly sensitive and specific in vitro isothermal nucleic acid amplification technology, offers an ideal approach to gbs screening in near-patient settings. rpa-based tests could be used both at the cdc recommended to 37 week gestation screen as well as for screening women who are in labour with an unknown gbs status. rpa utilises a number of enzymes, including recombinases and strand-displacing dna polymerases, to perform dna or rna amplification. rpa results are generated very rapidly, typically in under 15 min, and often in under and rpa is able to detect even very few copies of dna. a recently reported rpa assay for gbs had a limit of detection of genome copies, with positive results available within 8 min from the start of the reaction. rpa has many features which makes it more attractive than pcr-amplification based tests and ideal for point-of-care nad testing, such as are required to screen pregnant women for gbs colonisation. it does not require thermal cycling, with an optimum temperature range of 35–40 °c, thus negating the need for complex instrumentation. as a result of the extremely rapid cycling times, results are available much more rapidly than achieved with pcr. the objective of this study was to develop and optimise an rpa-based nucleic acid diagnostic test for gbs that can be performed in a wide variety of near-patient clinical settings, including labour and delivery wards. the rpa test developed in this study targets the camp factor cfb gene, which is specific to gbs, and is therefore, ideal for development of a gbs-specific assay. the analytical performance of the gbs rpa test was optimised and the assay was evaluated using clinical samples, and compared to a previously developed gbs real-time pcr assay. the results from these tests were correlated with the results of microbiological analyses of the samples. methods rpa reactions each rpa reaction contained 2 μl of dna in a final reaction volume of 50 μl. master mix was prepared by adding  μl primer/probe mix in rehydration buffer,  μl pcr grade h2o, 4 μl magnesium acetate, 2 μl template dna per reaction at the required concentration. for specificity testing this concentration was 1 ×  genome copies of dna from each isolate per reaction. for limit of detection experiments defined copy numbers ranging from to were tested. the kit used in this study was the custom exo kit from twistdx. all reagents were provided by twistdx. all rpa experiments were performed at 40 °c on the twista® instrument device using a reaction time of 20 min. incubations included a manual mixing step at 4 min incubation. for negative or no template controls these reactions were prepared as normal substituting the target dna with an equal volume of molecular grade water.table rpa primer and probe sequences real time pcr reactions a previously developed real time pcr assay for detection of gbs was used to benchmark the rpa assay. the final reaction contained 2 μl lc faststart dna master hybprobe 5 mm mgcl 500nm forward primer, 500nm reverse primer, 200nm each of a fluorescently labelled hybridisation probe pair, 10 μl pcr grade water and 2 μl dna, at the required concentration. for specificity testing this concentration was 1 ×  genome copies of dna from each isolate. for limit of detection experiments defined copy numbers ranging from to were tested. thermocycling conditions consisted of 95 °c for mins, and 50 cycles of 95 °c for 10 s 50 °c for 15 s and 72 °c for 10 s. reactions were carried out on the lightcycler® carousel-based system. organisms used for inclusivity and exclusivity testing s. agalactiae isolates used to confirm the inclusivity of the assay are listed in table  organisms used to confirm exclusivity of the assay are listed in tables  and dna was extracted manually from cultures using the qiagen blood and tissue kit. dna was quantified using the qubit analyser. 1 ×  genome copies of dna from each isolate were tested per reaction. dilutions of the target dna for limit of detection studies were prepared in molecular grade water.table organisms tested to confirm the inclusivity of the rpa assay s. agalactiae s. agalactiae s. agalactiae s. agalactiae s. agalactiae s. agalactiae s. agalactiae s. agalactiae s. agalactiae s. agalactiae s. agalactiae s. agalactiae s. agalactiae s. agalactiae s. agalactiae s. agalactiae s. agalactiae bccm belgian coordinated collections of microorganisms atcc american tissue culture collection streptococcus anginosus streptococcus dysgalactiae subsp. equisimilis streptococcus gordonii streptococcus intermedius streptococcus mitis streptococcus mutans streptococcus oralis streptococcus parasanguinis streptococcus pneumoniae streptococcus pneumoniae streptococcus pyogenes streptococcus salivarius dsmz german collection of microorganisms and cell culture limit of detection of the assay the limit of detection of the assay was determined by preparing known concentrations of gbs dna and testing in the rpa assay. eight replicates of concentrations equivalent to,,, and genome copies in a 2 μl volume were tested in three independent experiments. testing of clinical samples one hundred and twenty four vaginal swab samples which had been stored at −20 °c in lysis buffer from the bd genohm™ lysis kit were tested. this crude lysate was originally prepared by re-suspending swabs in 1 ml of sample buffer. of this, 400 μl was transferred into a lysis tube and lysed by mechanical disruption with silica beads according to the manufacturer’s instructions. from this crude lysate 2 μl was added directly to either the rpa reaction or the real-time pcr reaction.  analytical specificity of the rpa-gbs assay the inclusivity of the assay was determined by testing a panel of gbs isolates. all isolates were tested in triplicate. table  shows the results obtained, while representative rpa amplification curve graphs are shown in fig.  all gbs strains tested were detected. a positive signal is detected automatically by the twista software. the specificity of the assay was further challenged by testing a panel of closely related streptococcus species. no cross-reaction was observed. finally a panel of organisms associated with the site of infection were tested in duplicate. no cross-reactivity was observed.fig. rpa amplification curves obtained from a panel of gbs isolates tested with the rpa gbs assay. all isolates, listed in table  were tested in triplicate. a shows amplification curves obtained for isolates bccm and bccm b shows amplification curves obtained for isolates bccm and bccm fig. rpa results obtained when a streptococcus genus exclusivity panel, listed in table  was tested in the rpa gbs assay. a, b and c show amplification curves for only for the positive control gbs demonstrating specificity of the assay for gbs limit of detection the limit of detection of the rpa and real-time pcr assays was determined by testing eight replicates of each of the following concentrations,,,, and genome copies of gbs bccm in three independent runs. table  shows the hit rate analysis for the combined data from three independent experiments. the lod of the rpa gbs assay was shown to be between and genome equivalents, while the lod of the real-time pcr gbs assay was shown to be in the range of and genome copies, indicating that the analytical sensitivity of both assays is comparable. clinical performance evaluation one hundred and twenty four samples were tested in the rpa-gbs assay. for comparison the same sample set was also tested in the real-time pcr assay. all samples had previously been cultured for gbs. figure  shows representative rpa amplification curves obtained for some of the clinical samples tested. eighty five samples were positive when tested by rpa and samples were negative. the same result was obtained when the samples were re-tested using real-time pcr. the results were in full agreement with the pre-determined culture status of the samples.fig. representative rpa amplification curves obtained for eight of the clinical samples tested in the rpa gbs assay discussion the aim of this study was to demonstrate the application of rpa, a rapid amplification technology and its utility for detection of gbs in clinical samples. the current gold standard for determination of gbs status involves swab culture for 48 h in selective media. the rpa assay described in this study can be completed in 10–15 min post sample processing and offers a viable alternative for rapid near patient testing. the gene target used for development of the rpa-gbs assay was the cfb gene. this gene is present in all gbs isolates and considering the sequence homegeniety among isolates is a good target for development of an inclusive molecular test. following an extensive in-silico analysis of cfb gene sequences primers and probes for the rpa-gbs assay were designed according the criteria required for rpa amplification. an extensive performance evaluation of the assay was carried out with respect to analytical specificity and sensitivity. the inclusivity of the assay was determined by testing gbs isolates, all of which were detected. the exclusivity of the assay was determined by testing a panel of organisms from the streptococcus genus. none of these related organisms gave a signal in the assay. the exclusivity of the assay was further challenged by testing a panel of unrelated organisms commonly found in the gastrointestinal and genital tracts. none of these organisms produced a signal, demonstrating the specificity of the rpa-gbs assay. the limit of detection of the assay was determined by testing replicates of varying concentrations of gbs dna. this was done over three independent experiments. hit rate analysis showed the limit of detection to be between six and genome copies. the performance of the rpa assay was compared to a previously published real-time pcr. the limit of detection of the real-time pcr assay was comparable to that of the rpa assay, with both achieving a limit of detection below genome copies., the performance of both assays when applied to clinical samples was identical. some clinical samples which presumably had low cell counts also gave late onset times in rpa assays and cp values in pcr assays but were none the less detected, indicating that the limit of detection is in the acceptable range for application to clinical samples. from the results presented here, the potential of rpa as a technology for use in a point of care or near patient setting is clear. furthermore, the rpa reagents can be lyophilised and because the reaction is isothermal, instrumentation requirements are relatively straightforward. the reaction time is within the 10–15 min range, which offers the significant advantage of fast turnaround time compared to many other amplification technologies. these characteristics of rpa technology mean that it would be ideally suited for the development of poc assays. detection of gbs during labour is one application particularly suited to a point of care setting. results are often required rapidly and the current gold standard culture method takes 48 h to turn around meaning that it is cannot be used in a labour ward setting. even in relation to other standard molecular tests such as real-time pcr the results obtained with rpa are very promising. in order to further optimise the rpa assay described here for full clinical validation, some additional development work would be required including optimisation of an appropriate sample preparation method, compatible with the rpa reaction, and the addition of either a process control or internal amplification control to the assay as a target. iacs used in rpa assays have been previously reported.  we report here the evaluation of a specific, sensitive and rapid rpa assay for gbs detection in clinical samples. the newly developed assay is specific for the target of interest and has a limit of detection between six and genome copies. the assay was compared to a previously published real-time pcr assay for gbs. when applied to testing of clinical samples the performance of the rpa assay was identical to the real-time pcr assay with the added advantage that the assay time was reduced significantly to between and 15 min. the newly described rpa assay could potentially be utilised in a near-patient testing setting, allowing rapid clinical decisions to be made on the necessity to administer appropriate antibiotic treatment. additional files additional file 1: non-streptococcal species found at the site of infection used in rpa assay exclusivity testing. additional file 2: clinical sample analysis results. abbreviations cpthe cp value is the cycle at which fluorescence achieves a defined threshold. it corresponds to the cycle at which a statistically significant increase in fluorescence is first detected gbsgroup b streptococcus pcrpolymerase chain reaction rparecombinase polymerase amplification 
in this study, a recombinase polymerase amplification assay was developed and performance evaluated for the detection of group b streptococcus in vaginal swabs. the limit of detection was determined and the clinical performance was evaluated by testing vaginal swabs from women with both gbs positive and negative status. the analytical performance of the assay was evaluated by testing a panel of gbs reference strains and clinical isolates, and non-gbs organisms. the performance of the assay for testing of clinical samples is within the acceptable range. however, there is an on-going requirement for a near-patient diagnostic test for gbs that can be carried out at the time of delivery, ideally in the labour ward setting, particularly for women of unknown gbs colonisation status at the time of delivery. the limit of detection of the assay was shown to be between six and genome copies and was comparable to that of a real-time pcr assay, both achieving a limit of detection below genome copies. the performance of both assays when applied to clinical samples was identical.
 despite the implementation of prevention guidelines, group b streptococcal infection remains a leading cause of sepsis, pneumonia, and meningitis, resulting in significant neonatal morbidity and mortality. preventive approaches that identify women at risk of transmitting gbs have reduced the incidence of neonatal gbs disease, and dramatically decreased the associated mortality rates. however, there is an on-going requirement for a near-patient diagnostic test for gbs that can be carried out at the time of delivery, ideally in the labour ward setting, particularly for women of unknown gbs colonisation status at the time of delivery. methods in this study, a recombinase polymerase amplification assay was developed and performance evaluated for the detection of group b streptococcus in vaginal swabs. the assay uses the camp factor gene of gbs as the target gene. the analytical performance of the assay was evaluated by testing a panel of gbs reference strains and clinical isolates, and non-gbs organisms. the limit of detection was determined and the clinical performance was evaluated by testing vaginal swabs from women with both gbs positive and negative status.  based on specificity testing carried out the assay was shown to be specific for the target of interest. the limit of detection of the assay was shown to be between six and genome copies and was comparable to that of a real-time pcr assay, both achieving a limit of detection below genome copies. the performance of both assays when applied to clinical samples was identical.  a specific, sensitive rpa assay for gbs was developed. the performance of the assay for testing of clinical samples is within the acceptable range. electronic supplementary material the online version of this article contains supplementary material, which is available to authorized users. keywords group b streptococcusgbsneonatal infectionrecombinase polymerase amplificationpoint-of-carenear-patient testsspecificitylimit of detectionlabourneonatesissue-copyright-statement© the author 2016 