BACKGROUND
clostridium  perfringens is the primary cause of a range of diseases in animals and humans  <cit> .
most important are gas gangrene, which occurs mainly after contamination of wounds with cells or spores  <cit> , and enteric diseases that either solely affect the gut or in addition induce generalized symptoms, e.g.
pulpy kidney disease in ruminants  <cit> .
it is classified into five types, a to e, depending on the production of four major toxins   <cit> .
distinct types of these are associated with certain diseases.
in addition, clinical importance is attributed to the beta- <dig> and the enterotoxin, two of up to  <dig> potentially occurring minor toxins  <cit> .
the alpha toxin is the major pathogenicity factor in gas gangrene.
the coding gene  is chromosomally-located, highly-conserved, and therefore present in all c. perfringens strains  <cit> .
the second major toxin that is coded by cpb is the beta toxin.
it is involved in necrotic enteritis in several species, including cattle, and enterotoxaemia like lamb dysentery  <cit> .
the third major toxin, the epsilon toxin coded by etx, is important for enterotoxaemia in sheep, goats, and less frequently in cattle  <cit> .
type e that produces the iota toxin, which consists of two components coded by iap and ibp, was previously associated with enterotoxaemia in calves as well as in lambs and rabbits  <cit> .
the role of the beta- <dig> toxin in intestinal diseases in different animal species is still not entirely clear  <cit> .
until now, it has been demonstrated to be a key factor for enteritis in piglets  <cit> .
the reported frequencies for cattle and the conclusions drawn from different studies concerning its role, especially in enteric disease cases, differ widely  <cit> .
it is coded by the plasmid-borne cpb <dig> that occurs in two variants   <cit> .
the most important minor toxin for human intestinal diseases is the enterotoxin.
this toxin is coded by cpe that can be located on the chromosome or on a plasmid.
it causes food poisoning, antibiotic-associated diarrhea, and sporadic diarrhea  <cit> .
in animals it was previously suspected of being associated with enteritis in several species, but its importance still remains unclear  <cit> .
c. perfringens was also suspected of being involved in the development of additional diseases, including an enterotoxaemia in calves as well as an acute necro-hemorrhagic enteritis in adult cattle  <cit> .
till now studies on the diversity of c. perfringens types in mature dairy cattle testing for the coding genes of all above mentioned toxins are rare.
thus, within this study c. perfringens isolates, cultured from samples collected from a large number of dairy farms, were characterized by testing with a multiplex pcr for the four major toxin genes  as well as the presence of the cpb <dig>  and cpe.
methods
sample collection
fecal samples  from the rectum and rumen content  were collected from each of ten lactating cows from  <dig> dairy farms in germany within a study examining the occurrence of clostridium species in dairy herds.
the study population was previously described by seyboldt et al.
<cit> .
feces and rumen content were transferred into  <dig> and 50 ml screw cap tubes, respectively.
the texture was documented for each fecal sample.
additionally,  <dig> feed samples were collected .
all samples were immediately cooled at < 8 °c.
culture conditions
anaerobic cultivation of clostridium isolates was performed at the institute for microbiology, department of infectious diseases, university of veterinary medicine hannover.
fecal and ruminal fluid samples were directly spread on schaedler agar plates  supplemented with 10 mg/l vit k <dig>  and 5 % bovine blood , and incubated at 37 °c for 48 h under anaerobic conditions.
25 g of each feed sample were transferred into 225 ml peptone water  and suspended for 20 min in a shaking water bath at room temperature.
afterwards, 1 ml was transferred into liver-bouillon .
additionally,  <dig> - <dig>  g of each feces and ruminal fluid was transferred into 8 ml liver-bouillon.
spores were selected by heating the bouillon at 80 °c for 10 min in a water bath, followed by incubation at 37 °c for 48 h. afterwards, one loopfull was spread by dilution-streaking on reinforced clostridial agar  with 12 mg/l kanamycin , 75 mg/l neomycin  and 10 % bovine blood, as well as on schaedler agar plates.
these plates were then incubated anaerobically at 37 °c for 48 h. colonies suspected of being clostridium species were transferred to pure cultures.
simultaneously, all isolates were tested for growth under aerobic conditions.
only gram-positive or -intermediate isolates showing no growth under aerobic conditions were transferred as pure cultures on columbia agar plates containing sheep blood  to the institute of food quality and food safety, university of veterinary medicine hannover for further investigation.
dna isolation and amplification of 16s rrna gene
colonies from pure cultures were transferred into 180 μl of lysis buffer , and incubated for 30 min at 37 °c.
dna was isolated with the dneasy blood and tissue kit  according to the manufacturer’s instructions for gram-positive bacteria.
elution was carried out with 100 μl of elution buffer.
all primers applied in this study were added to the reaction mixture at a concentration of  <dig> pmol/μl.
pcr reaction mixtures for amplification of the 16s rrna gene consisted of 15 μl mastermix , 1 μl primer 16suni-l , 1 μl primer 16suni-r,  <dig>  μl mgcl <dig> ,  <dig>  μl nuclease free water, and 5 μl sample dna.
the thermocycling program started with an initial denaturation at 94 °c for 3 min, followed by 35 cycles at 94 °c for 30 s, 55 °c for 30 s and 72 °c for 45 s. amplification products  were loaded onto a  <dig>  % agarose gel , and electrophoresis was performed for 45 min at  <dig> volt/cm.
the remaining 25 μl of amplification product were used for sequencing in both directions  with sequencing primers 533 f and 907r .
all sequences were aligned against two gene databases, ncbi-blast  using the megablast tool; http://blast.ncbi.nlm.nih.gov/blast.cgi?program=blastn&page_type=blastsearch&link_loc=blasthome) and sepsitest™-blast .table  <dig> oligonucleotide primer for 16s rrna gene amplification and sequencing
16s rrna gene amplification primera
16s rrna gene sequencing primerb
akuhnert p, capaul se, nicolet j, frey j. phylogenetic positions of clostridium chauvoei and clostridium septicum based on 16s rrna gene sequences.
int j syst bacteriol.
1996;46:1174-1176
bpetti ca.
detection and identification of microorganisms by gene amplification and sequencing.
clin infect dis.
2007;44:1108–1114
cindicating the position of each primer relative to the 16s rrna gene sequence of e. coli j01859
toxin-genotyping
all isolates identified as c. perfringens were further genotyped using two multiplex pcr assays with primers developed and validated by baums et al.
<cit> .
each 25-μl reaction mixture for detection of the four major toxin genes contained  <dig>  μl of mastermix ;  <dig>  μl of nuclease-free water;  <dig>  μl of each primer cpa5l, cpa5r, cpil, cpir, etxl, etxr; 1 μl of each primer cpb1l, cpb1r; 2 μl mgcl <dig> ; and 5 μl dna.
pcr assays for detection of the two minor toxin genes cpe and cpb <dig> were carried out with mixtures containing  <dig>  μl of mastermix ,  <dig>  μl of nuclease-free water, 1 μl of primer cpel, 1 μl primer cper,  <dig>  μl primer cpb2l,  <dig>  μl primer cpb2r, 2 μl mgcl <dig>  and 5 μl dna.
the amplification program of both assays started with an initial denaturation at 95 °c for 2 min, followed by 35 cycles of 20 s at 94 °c, 20 s at 55 °c and 30 s at 72 °c.
for positive controls, in-house collection strains were used .
isolates that were negative for all toxin genes were additionally tested with another primer set for the presence of the cpa gene   <cit> .
reaction mixtures contained  <dig>  μl mastermix , each  <dig>  μl of forward and reverse primer,  <dig>  μl mgcl <dig> ,  <dig>  μl nuclease-free water, and 5 μl of sample dna.
amplification was carried out after denaturation for 5 min at 94 °c; with 35 cycles comprising 94 °c for 30 s, 55 °c for 30 s and 72 °c for 30 s; and a final elongation at 72 °c for 10 min.
as the cpb <dig> primers used in the duplex assay only target the consensus variant of the gene, all isolates were additionally tested with the pcr assay developed by jost et al.
<cit> , to target both allelic variants, consensus  and atypical .
reaction mixtures contained of  <dig>  μl mastermix ,  <dig>  μl of each primer ,  <dig>  μl mgcl <dig> ,  <dig>  μl nuclease-free water, and  <dig>  μl of sample dna.
amplification was carried out after denaturation for 5 min at 94 °c; with 35 cycles comprising 94 °c for 30 s, 55 °c for 1 min and 72 °c for 1 min; and a final elongation at 72 °c for 10 min.
the positive control for the consensus gene was the above mentioned type a strain .
a field isolate of the in-house collection  served as positive control for the atypical cpb <dig> variant.
separation of pcr products was performed for all typing assays on  <dig>  % agarose gels.table  <dig> oligonucleotide primers for c. perfringens toxin gene detection
multiplex pcr a
cpa
cpb
iap
etx
duplex pcr a
cpe
cpb2
singleplex pcr for cpa detectionb
cpa
pcr for cpb <dig> variantsc
cpb2aty
cpb2con
abaums cg, schotte u, amtsberg g, goethe r. diagnostic multiplex pcr for toxin genotyping of clostridium perfringens isolates.
vet microbiol.
2004;100:11–16
bschlapp t, blaha i, bauerfeind r, wieler lh, schoepe h, weiss r, baljer g. synthesis and evaluation of a nonradioactive gene probe for the detection of clostridium-perfringens alpha-toxin.
mol cell probe.
1995;9:101–109
cjost bh, billington sj, trinh ht, bueschel dm, songer jg.
atypical cpb <dig> genes, encoding beta2-toxin in clostridium perfringens isolates of nonporcine origin.
infect immun.
2005;73:652–6
RESULTS
in total,  <dig> isolates of c. perfringens were cultured from samples from  <dig> farms.
of these,  <dig> originated from feces  and  <dig> from ruminal fluid .
the  <dig> feed isolates were obtained from one potato pulp, one pressed pulp silage, and all others from grass silages cut at different times during the year and stored for variable periods, ranging from  <dig> up to 72 weeks.
with the pcr developed by baums et al.
<cit> ,  <dig>  of the c. perfringens isolates were negative for all six toxin genes, also with repetition.
additional testing with the primers developed by schlapp et al.
<cit>  lead to a cpa positive result for all these  <dig> isolates.
a positive result for the consensus cpb <dig> gene was obtained with the duplex pcr for  <dig> of the  <dig> isolates  <cit> .
in contrast, with the pcr that was additionally applied to target both allelic variants  <cit> ,  <dig> isolates  and  <dig> isolates were positive for the consensus and the atypical cpb <dig> gene, respectively.
solely positive for one major toxin gene  and therefore assigned to type a of c. perfringens were  <dig> isolates.
two isolates were assigned to type d .
additionally, the consensus and atypical variants of the cpb <dig> gene were present in  <dig>  and  <dig>  of all isolates from feces, and  <dig>  and  <dig>  of all obtained from rumen content, respectively.
of the type a isolates,  <dig>  were positive for cpe.
none carried cpb or iap.
table  <dig> shows the occurring types in individual samples.
this study was not carried out to determine differences between cows with diarrhea and those without.
however, after clinical examination when fecal samples were collected, diarrhea was observed in some  animals.
this was considered as potential sign of acute enteric disorder.
according to the sampling scheme feces were collected and investigated also from these cows.
to exclude study bias toxin typing results of fecal isolates from these animals are given separately in table  <dig>  no considerable differences were observed between typing results for fecal samples from cows showing diarrhea and those without.
nevertheless, the number of investigated isolates from animals with diarrhea was too small to draw conclusions on differences.table  <dig> genotypes of c. perfringens present in feces, rumen content and feed
n =
n =
n =
n =
n =
n =
n =
n =
n =
n =
n =
type a = cpa
+; type aβ2c = cpa
+ + cpb2con
+; type aβ2a = cpa
+ + cpb2aty
+; type ae = cpa
+ + cpe
+; type d = cpa
+ + etx
+; type dβ2c = cpa
+ + etx
+ + cpb2con
+
isolation of more than one genotype from single samples is indicated by listing each genotype separated by a “+”
discussion
studies on the occurring types of c. perfringens in mature dairy cattle including all toxin genes investigated within this study are rare.
for the presence of the cpb <dig> and the cpe gene broad differences were reported for cattle .
therefore,  <dig> c. perfringens isolates from dairy cattle were toxin genotyped to gain further insight into the presence of its different types on dairy farms.
mainly c. perfringens type a was detected.
this is the most frequently isolated type in samples of human, animal or environmental origin  <cit> .
only two isolates  of all were designated to be c. perfringens type d , which is known to cause enterotoxaemia in small ruminants.
additionally, reports exist which assume that it plays a role in disease in calves  <cit> .
both investigated type d positive cows showed no signs of acute disorders, similar to those described for disease in small ruminants affected by type d. within this study, none of the investigated isolates carried genes for the beta or the iota toxin found in types b, c and/or e. though, for example, iota toxin gene positive c. perfringens  were previously detected in healthy calves as well as in those suffering from diarrhea  <cit> .
the beta- <dig> toxin is known to be associated with enteritis in piglets and a causative role of it in enteric disease of calves was assumed  <cit> .
of all isolates cultured in this study,  <dig>  and  <dig>  obtained from feces and rumen content harbored the cpb <dig> gene, respectively.
a similar rate  was found by lebrun et al.
who investigated isolates obtained from  <dig> healthy calves  <cit> .
a screening conducted in north america for cpb <dig> in field isolates obtained from clinical laboratories detected the gene in  <dig>  % of all isolates from cattle   <cit> .
within that study a much higher rate of  <dig>  % in isolates from calves suffering from enteric disease was found.
this was mainly due to the high detection rate in type e isolates .
a previous study conducted in belgium, detected this gene in around 30 % of all isolates that were obtained equally from around 60 % of all healthy and diarrheic calves  <cit> .
gurjar et al.
investigated feces of cows from seven dairy farms and found the toxin gene in 68 % of all c. perfringens positive fecal samples  <cit> .
within the present study we distinguished between both allelic variants of cpb <dig>  the so called atypical cpb <dig> was detected as well in feces as in rumen content about twice as often as the consensus variant.
previous studies found that in porcine isolates the consensus variant occurs more frequently  <cit> .
in contrast, in isolates of non-porcine origin the atypical variant is more common, whereby variations exist between different animal species  <cit> .
until now mainly small numbers of isolates obtained from cattle have been investigated discriminating between the two allelic variants of this gene.
jost et al.
tested  <dig> isolates from cattle and found the atypical cpb <dig> in seven of ten type a, both type c and  <dig> of  <dig> type e strains  <cit> .
kircanski et al.
tested bovine isolates and found the consensus and the atypical variant in  <dig> and  <dig> of  <dig> isolates, respectively  <cit> .
the study from lebrun et al.
focusing on calves suffering from diarrhea detected in these solely the consensus variant  <cit> .
also, in isolates obtained from eight healthy calves the consensus variant  was detected more frequently than the atypical allele .
one larger study was carried out on  <dig> bovine c. perfringens isolates from healthy cattle and animals suffering from acute enteric disease  <cit> .
deviating from the present study, schlegel et al.
found in 13 % of all isolates the atypical variant, but in none the consensus cpb <dig>  despite the varying detection frequencies, our results and those of previous studies demonstrate that both allelic variants occur frequently in cattle, whereby the atypical cpb <dig> seems to dominate.
human enteric diseases, due to c. perfringens, are mainly caused by strains producing the enterotoxin  <cit> .
these food poisoning strains are among those pathogens most frequently associated with foodborne illnesses  <cit> .
cpe was only detected in five  of all investigated isolates in the present study indicating that dairy cows are no primary source for these food poisoning strains.
kukier et al.
reported similar findings of  <dig>  % cpe positive isolates from bovine fecal samples  <cit> .
a higher rate was reported by gurjar et al.
<cit> , who found the enterotoxin gene in  <dig>  % of all pcr positive fecal samples from dairy cows in pennsylvania, usa.
miwa et al.
even reported a rate of 26 % cpe positive feces of healthy slaughter cattle in japan using nested pcr  <cit> .
most studies on the epidemiology of enterotoxigenic c. perfringens in farm animals did not recover isolates, and therefore lindstroem et al.
presumed that maybe unspecific amplification lead to the finding of high rates  <cit> .
in contrast, within the present study only cultured isolates confirmed to be c. perfringens were tested for the presence of cpe.
differences between studies may also display the reported divergence in detection of c. perfringens toxin types in sample material of different geographical locations, as suggested for cpb <dig> positive isolates  <cit> .
c. perfringens was found not only ubiquitous in feces but also in rumen content of cows within this study.
this is to the authors knowledge the first investigation, that toxinotyped such a large number of c. perfringens isolates  obtained from rumen content of cows.
from this matrix only type a was cultured.
a few isolates were tested positive for cpe and a larger amount for consensus or atypical cpb <dig>
due to the culture conditions, not specifically selective for c. perfringens, isolates were obtained from fewer samples than it could have been expected with a more selective method.
nonetheless, most previous studies tested field isolates  or isolates from calves.
in contrast, this study examined a large number of isolates obtained from mature dairy cattle.
diarrhea was considered within this study as a sign of acute enteric disease.
thus, typing results of fecal samples of these animals are presented separately , although the study was not carried out to determine differences between cows with diarrhea and those without.
no considerable differences were detected between fecal samples of animals showing diarrhea and those without.
with the pcr developed and validated by baums et al.
<cit> ,  <dig>  of all c. perfringens, that had previously been identified on the basis of 16s rrna gene sequencing, gave negative results for the cpa gene.
as it is known to be chromosomally coded and highly conserved, all c. perfringens isolates are expected to carry this gene  <cit> .
therefore, an additional pcr was applied using previously published primers to test the negative isolates for the presence of the cpa gene.
with the primers developed by schlapp et al.
<cit>  all isolates that were negative with the first primer set gave positive results.
also other authors found small numbers of presumed cpa negative isolates of animal origin  <cit> .
when tested with another pcr, these isolates of those previous studies may also give positive results.
a possible reason for these negative pcr outcomes may be nucleotide variations in the primer binding region  <cit> .
c. perfringens confirmation is often done by detection of the cpa gene.
considering that around  <dig>  % of the investigated isolates gave false negative results using one pcr assay, this point needs attention.
the primer set for cpb <dig> detection used in the duplex assay  <cit>  only detects the consensus variant of the cpb <dig> gene.
thus, we additionally applied a pcr that distinguishes between the consensus and the atypical variant.
we found differing results between the two primer sets targeting the consensus variant of the cpb <dig> gene published by baums et al.
<cit>  and jost et al.
<cit> .
with the primers used in the duplex assay  <dig> isolates were tested positive for the consensus cpb <dig>  whereas with the more recent primer set described by jost et al.
<dig> isolates  gave a positive result.
a previous study investigated the genetic diversity of cpb <dig> genes and found for the consensus variant sequence similarities between  <dig>  and 100 %  <cit> .
thus, apart from the genetically low relatedness between the consensus and the atypical variant also within the consensus allele nucleotide variations exist.
this could explain the differing results obtained with both assays.
CONCLUSIONS
the diversity of c. perfringens types was low as mainly type a was cultivated.
of all isolates from feces and rumen content  <dig>  and  <dig>  harbored one variant of the cpb <dig> gene, respectively.
the atypical allele occurred about twice as often as the consensus variant.
the enterotoxin gene was present in only  <dig>  % of all isolates.
thus, the present study indicates that dairy cows are no primary source for potentially human pathogenic enterotoxin gene positive strains.

 clostridium perfringens is the primary cause of a range of diseases in animals and humans. most important are gas gangrene, which occurs mainly after contamination of wounds with cells or spores, and enteric diseases that either solely affect the gut or in addition induce generalized symptoms, e.g. pulpy kidney disease in ruminants. it is classified into five types, a to e, depending on the production of four major toxins. distinct types of these are associated with certain diseases. in addition, clinical importance is attributed to the beta- and the enterotoxin, two of up to potentially occurring minor toxins. the alpha toxin is the major pathogenicity factor in gas gangrene. the coding gene is chromosomally-located, highly-conserved, and therefore present in all c. perfringens strains. the second major toxin that is coded by cpb is the beta toxin. it is involved in necrotic enteritis in several species, including cattle, and enterotoxaemia like lamb dysentery. the third major toxin, the epsilon toxin coded by etx, is important for enterotoxaemia in sheep, goats, and less frequently in cattle. type e that produces the iota toxin, which consists of two components coded by iap and ibp, was previously associated with enterotoxaemia in calves as well as in lambs and rabbits. the role of the beta- toxin in intestinal diseases in different animal species is still not entirely clear. until now, it has been demonstrated to be a key factor for enteritis in piglets. the reported frequencies for cattle and the conclusions drawn from different studies concerning its role, especially in enteric disease cases, differ widely. it is coded by the plasmid-borne cpb that occurs in two variants. the most important minor toxin for human intestinal diseases is the enterotoxin. this toxin is coded by cpe that can be located on the chromosome or on a plasmid. it causes food poisoning, antibiotic-associated diarrhea, and sporadic diarrhea. in animals it was previously suspected of being associated with enteritis in several species, but its importance still remains unclear. c. perfringens was also suspected of being involved in the development of additional diseases, including an enterotoxaemia in calves as well as an acute necro-hemorrhagic enteritis in adult cattle. till now studies on the diversity of c. perfringens types in mature dairy cattle testing for the coding genes of all above mentioned toxins are rare. thus, within this study c. perfringens isolates, cultured from samples collected from a large number of dairy farms, were characterized by testing with a multiplex pcr for the four major toxin genes as well as the presence of the cpb and cpe. methods sample collection fecal samples from the rectum and rumen content were collected from each of ten lactating cows from dairy farms in germany within a study examining the occurrence of clostridium species in dairy herds. the study population was previously described by seyboldt et al.. feces and rumen content were transferred into and 50 ml screw cap tubes, respectively. the texture was documented for each fecal sample. additionally, feed samples were collected. all samples were immediately cooled at < 8 °c. culture conditions anaerobic cultivation of clostridium isolates was performed at the institute for microbiology, department of infectious diseases, university of veterinary medicine hannover. fecal and ruminal fluid samples were directly spread on schaedler agar plates supplemented with 10 mg/l vit k and 5 % bovine blood, and incubated at 37 °c for 48 h under anaerobic conditions. 25 g of each feed sample were transferred into 225 ml peptone water and suspended for 20 min in a shaking water bath at room temperature. afterwards, 1 ml was transferred into liver-bouillon. additionally, -  g of each feces and ruminal fluid was transferred into 8 ml liver-bouillon. spores were selected by heating the bouillon at 80 °c for 10 min in a water bath, followed by incubation at 37 °c for 48 h. afterwards, one loopfull was spread by dilution-streaking on reinforced clostridial agar with 12 mg/l kanamycin, 75 mg/l neomycin and 10 % bovine blood, as well as on schaedler agar plates. these plates were then incubated anaerobically at 37 °c for 48 h. colonies suspected of being clostridium species were transferred to pure cultures. simultaneously, all isolates were tested for growth under aerobic conditions. only gram-positive or -intermediate isolates showing no growth under aerobic conditions were transferred as pure cultures on columbia agar plates containing sheep blood to the institute of food quality and food safety, university of veterinary medicine hannover for further investigation. dna isolation and amplification of 16s rrna gene colonies from pure cultures were transferred into 180 μl of lysis buffer, and incubated for 30 min at 37 °c. dna was isolated with the dneasy blood and tissue kit according to the manufacturer’s instructions for gram-positive bacteria. elution was carried out with 100 μl of elution buffer. all primers applied in this study were added to the reaction mixture at a concentration of pmol/μl. pcr reaction mixtures for amplification of the 16s rrna gene consisted of 15 μl mastermix, 1 μl primer 16suni-l, 1 μl primer 16suni-r,  μl mgcl,  μl nuclease free water, and 5 μl sample dna. the thermocycling program started with an initial denaturation at 94 °c for 3 min, followed by 35 cycles at 94 °c for 30 s, 55 °c for 30 s and 72 °c for 45 s. amplification products were loaded onto a  % agarose gel, and electrophoresis was performed for 45 min at volt/cm. the remaining 25 μl of amplification product were used for sequencing in both directions with sequencing primers 533 f and 907r. all sequences were aligned against two gene databases, ncbi-blast using the megablast tool; http://blast.ncbi.nlm.nih.gov/blast.cgi?program=blastn&page_type=blastsearch&link_loc=blasthome) and sepsitest™-blast.table oligonucleotide primer for 16s rrna gene amplification and sequencing 16s rrna gene amplification primera 16s rrna gene sequencing primerb akuhnert p, capaul se, nicolet j, frey j. phylogenetic positions of clostridium chauvoei and clostridium septicum based on 16s rrna gene sequences. int j syst bacteriol. 1996;46:1174-1176 bpetti ca. detection and identification of microorganisms by gene amplification and sequencing. clin infect dis. 2007;44:1108–1114 cindicating the position of each primer relative to the 16s rrna gene sequence of e. coli j01859 toxin-genotyping all isolates identified as c. perfringens were further genotyped using two multiplex pcr assays with primers developed and validated by baums et al.. each 25-μl reaction mixture for detection of the four major toxin genes contained  μl of mastermix;  μl of nuclease-free water;  μl of each primer cpa5l, cpa5r, cpil, cpir, etxl, etxr; 1 μl of each primer cpb1l, cpb1r; 2 μl mgcl; and 5 μl dna. pcr assays for detection of the two minor toxin genes cpe and cpb were carried out with mixtures containing  μl of mastermix,  μl of nuclease-free water, 1 μl of primer cpel, 1 μl primer cper,  μl primer cpb2l,  μl primer cpb2r, 2 μl mgcl and 5 μl dna. the amplification program of both assays started with an initial denaturation at 95 °c for 2 min, followed by 35 cycles of 20 s at 94 °c, 20 s at 55 °c and 30 s at 72 °c. for positive controls, in-house collection strains were used. isolates that were negative for all toxin genes were additionally tested with another primer set for the presence of the cpa gene. reaction mixtures contained  μl mastermix, each  μl of forward and reverse primer,  μl mgcl,  μl nuclease-free water, and 5 μl of sample dna. amplification was carried out after denaturation for 5 min at 94 °c; with 35 cycles comprising 94 °c for 30 s, 55 °c for 30 s and 72 °c for 30 s; and a final elongation at 72 °c for 10 min. as the cpb primers used in the duplex assay only target the consensus variant of the gene, all isolates were additionally tested with the pcr assay developed by jost et al., to target both allelic variants, consensus and atypical. reaction mixtures contained of  μl mastermix,  μl of each primer,  μl mgcl,  μl nuclease-free water, and  μl of sample dna. amplification was carried out after denaturation for 5 min at 94 °c; with 35 cycles comprising 94 °c for 30 s, 55 °c for 1 min and 72 °c for 1 min; and a final elongation at 72 °c for 10 min. the positive control for the consensus gene was the above mentioned type a strain. a field isolate of the in-house collection served as positive control for the atypical cpb variant. separation of pcr products was performed for all typing assays on  % agarose gels.table oligonucleotide primers for c. perfringens toxin gene detection multiplex pcr a cpa cpb iap etx duplex pcr a cpe cpb2 singleplex pcr for cpa detectionb cpa pcr for cpb variantsc cpb2aty cpb2con abaums cg, schotte u, amtsberg g, goethe r. diagnostic multiplex pcr for toxin genotyping of clostridium perfringens isolates. vet microbiol. 2004;100:11–16 bschlapp t, blaha i, bauerfeind r, wieler lh, schoepe h, weiss r, baljer g. synthesis and evaluation of a nonradioactive gene probe for the detection of clostridium-perfringens alpha-toxin. mol cell probe. 1995;9:101–109 cjost bh, billington sj, trinh ht, bueschel dm, songer jg. atypical cpb genes, encoding beta2-toxin in clostridium perfringens isolates of nonporcine origin. infect immun. 2005;73:652–6  in total, isolates of c. perfringens were cultured from samples from farms. of these, originated from feces and from ruminal fluid. the feed isolates were obtained from one potato pulp, one pressed pulp silage, and all others from grass silages cut at different times during the year and stored for variable periods, ranging from up to 72 weeks. with the pcr developed by baums et al., of the c. perfringens isolates were negative for all six toxin genes, also with repetition. additional testing with the primers developed by schlapp et al. lead to a cpa positive result for all these isolates. a positive result for the consensus cpb gene was obtained with the duplex pcr for of the isolates. in contrast, with the pcr that was additionally applied to target both allelic variants, isolates and isolates were positive for the consensus and the atypical cpb gene, respectively. solely positive for one major toxin gene and therefore assigned to type a of c. perfringens were isolates. two isolates were assigned to type d. additionally, the consensus and atypical variants of the cpb gene were present in and of all isolates from feces, and and of all obtained from rumen content, respectively. of the type a isolates, were positive for cpe. none carried cpb or iap. table  shows the occurring types in individual samples. this study was not carried out to determine differences between cows with diarrhea and those without. however, after clinical examination when fecal samples were collected, diarrhea was observed in some animals. this was considered as potential sign of acute enteric disorder. according to the sampling scheme feces were collected and investigated also from these cows. to exclude study bias toxin typing results of fecal isolates from these animals are given separately in table  no considerable differences were observed between typing results for fecal samples from cows showing diarrhea and those without. nevertheless, the number of investigated isolates from animals with diarrhea was too small to draw conclusions on differences.table genotypes of c. perfringens present in feces, rumen content and feed n =  n =  n =  n =  n =  n =  n =  n =  n =  n =  n =  type a = cpa +; type aβ2c = cpa + + cpb2con +; type aβ2a = cpa + + cpb2aty +; type ae = cpa + + cpe +; type d = cpa + + etx +; type dβ2c = cpa + + etx + + cpb2con + isolation of more than one genotype from single samples is indicated by listing each genotype separated by a “+” discussion studies on the occurring types of c. perfringens in mature dairy cattle including all toxin genes investigated within this study are rare. for the presence of the cpb and the cpe gene broad differences were reported for cattle. therefore, c. perfringens isolates from dairy cattle were toxin genotyped to gain further insight into the presence of its different types on dairy farms. mainly c. perfringens type a was detected. this is the most frequently isolated type in samples of human, animal or environmental origin. only two isolates of all were designated to be c. perfringens type d, which is known to cause enterotoxaemia in small ruminants. additionally, reports exist which assume that it plays a role in disease in calves. both investigated type d positive cows showed no signs of acute disorders, similar to those described for disease in small ruminants affected by type d. within this study, none of the investigated isolates carried genes for the beta or the iota toxin found in types b, c and/or e. though, for example, iota toxin gene positive c. perfringens were previously detected in healthy calves as well as in those suffering from diarrhea. the beta- toxin is known to be associated with enteritis in piglets and a causative role of it in enteric disease of calves was assumed. of all isolates cultured in this study, and obtained from feces and rumen content harbored the cpb gene, respectively. a similar rate was found by lebrun et al. who investigated isolates obtained from healthy calves. a screening conducted in north america for cpb in field isolates obtained from clinical laboratories detected the gene in  % of all isolates from cattle. within that study a much higher rate of  % in isolates from calves suffering from enteric disease was found. this was mainly due to the high detection rate in type e isolates. a previous study conducted in belgium, detected this gene in around 30 % of all isolates that were obtained equally from around 60 % of all healthy and diarrheic calves. gurjar et al. investigated feces of cows from seven dairy farms and found the toxin gene in 68 % of all c. perfringens positive fecal samples. within the present study we distinguished between both allelic variants of cpb the so called atypical cpb was detected as well in feces as in rumen content about twice as often as the consensus variant. previous studies found that in porcine isolates the consensus variant occurs more frequently. in contrast, in isolates of non-porcine origin the atypical variant is more common, whereby variations exist between different animal species. until now mainly small numbers of isolates obtained from cattle have been investigated discriminating between the two allelic variants of this gene. jost et al. tested isolates from cattle and found the atypical cpb in seven of ten type a, both type c and of type e strains. kircanski et al. tested bovine isolates and found the consensus and the atypical variant in and of isolates, respectively. the study from lebrun et al. focusing on calves suffering from diarrhea detected in these solely the consensus variant. also, in isolates obtained from eight healthy calves the consensus variant was detected more frequently than the atypical allele. one larger study was carried out on bovine c. perfringens isolates from healthy cattle and animals suffering from acute enteric disease. deviating from the present study, schlegel et al. found in 13 % of all isolates the atypical variant, but in none the consensus cpb despite the varying detection frequencies, our results and those of previous studies demonstrate that both allelic variants occur frequently in cattle, whereby the atypical cpb seems to dominate. human enteric diseases, due to c. perfringens, are mainly caused by strains producing the enterotoxin. these food poisoning strains are among those pathogens most frequently associated with foodborne illnesses. cpe was only detected in five of all investigated isolates in the present study indicating that dairy cows are no primary source for these food poisoning strains. kukier et al. reported similar findings of  % cpe positive isolates from bovine fecal samples. a higher rate was reported by gurjar et al., who found the enterotoxin gene in  % of all pcr positive fecal samples from dairy cows in pennsylvania, usa. miwa et al. even reported a rate of 26 % cpe positive feces of healthy slaughter cattle in japan using nested pcr. most studies on the epidemiology of enterotoxigenic c. perfringens in farm animals did not recover isolates, and therefore lindstroem et al. presumed that maybe unspecific amplification lead to the finding of high rates. in contrast, within the present study only cultured isolates confirmed to be c. perfringens were tested for the presence of cpe. differences between studies may also display the reported divergence in detection of c. perfringens toxin types in sample material of different geographical locations, as suggested for cpb positive isolates. c. perfringens was found not only ubiquitous in feces but also in rumen content of cows within this study. this is to the authors knowledge the first investigation, that toxinotyped such a large number of c. perfringens isolates obtained from rumen content of cows. from this matrix only type a was cultured. a few isolates were tested positive for cpe and a larger amount for consensus or atypical cpb due to the culture conditions, not specifically selective for c. perfringens, isolates were obtained from fewer samples than it could have been expected with a more selective method. nonetheless, most previous studies tested field isolates or isolates from calves. in contrast, this study examined a large number of isolates obtained from mature dairy cattle. diarrhea was considered within this study as a sign of acute enteric disease. thus, typing results of fecal samples of these animals are presented separately, although the study was not carried out to determine differences between cows with diarrhea and those without. no considerable differences were detected between fecal samples of animals showing diarrhea and those without. with the pcr developed and validated by baums et al., of all c. perfringens, that had previously been identified on the basis of 16s rrna gene sequencing, gave negative results for the cpa gene. as it is known to be chromosomally coded and highly conserved, all c. perfringens isolates are expected to carry this gene. therefore, an additional pcr was applied using previously published primers to test the negative isolates for the presence of the cpa gene. with the primers developed by schlapp et al. all isolates that were negative with the first primer set gave positive results. also other authors found small numbers of presumed cpa negative isolates of animal origin. when tested with another pcr, these isolates of those previous studies may also give positive results. a possible reason for these negative pcr outcomes may be nucleotide variations in the primer binding region. c. perfringens confirmation is often done by detection of the cpa gene. considering that around  % of the investigated isolates gave false negative results using one pcr assay, this point needs attention. the primer set for cpb detection used in the duplex assay only detects the consensus variant of the cpb gene. thus, we additionally applied a pcr that distinguishes between the consensus and the atypical variant. we found differing results between the two primer sets targeting the consensus variant of the cpb gene published by baums et al. and jost et al.. with the primers used in the duplex assay isolates were tested positive for the consensus cpb whereas with the more recent primer set described by jost et al. isolates gave a positive result. a previous study investigated the genetic diversity of cpb genes and found for the consensus variant sequence similarities between and 100 %. thus, apart from the genetically low relatedness between the consensus and the atypical variant also within the consensus allele nucleotide variations exist. this could explain the differing results obtained with both assays.  the diversity of c. perfringens types was low as mainly type a was cultivated. of all isolates from feces and rumen content and harbored one variant of the cpb gene, respectively. the atypical allele occurred about twice as often as the consensus variant. the enterotoxin gene was present in only  % of all isolates. thus, the present study indicates that dairy cows are no primary source for potentially human pathogenic enterotoxin gene positive strains. 
to gain more insight into the occurrence of its different toxin-genotypes in dairy herds, including those toxin genes previously associated with diseases in cattle or humans, isolates cultivated from feces, rumen content and feed collected from dairy farms were characterized by pcr. those from rumen content and feed were all assigned to type a. the consensus and atypical variants of the cpb gene were detected in and of all isolates from feces, and and of all isolates from rumen content, respectively. c. perfringensdairy farmscattletoxin-genotyperumen contenthttp://dx.doi.org/ /501100005908bundesministerium für ernährung und landwirtschaft2810hs0052810hs036seyboldt christian abdulmawjood amir issue-copyright-statement© the author 2016 both allelic variants of cpb occurred frequently in animals without signs of acute enteric disease, whereby the atypical variant dominated. therefore, the present study indicates that dairy cows are no primary source for potentially human pathogenic enterotoxin gene positive strains. five of all type a isolates were positive for the cpe gene.
 clostridium perfringens is the causative agent of several diseases in animals and humans, including histotoxic and enteric infections. to gain more insight into the occurrence of its different toxin-genotypes in dairy herds, including those toxin genes previously associated with diseases in cattle or humans, isolates cultivated from feces, rumen content and feed collected from dairy farms were characterized by pcr.  isolates from feces were assigned to type a and d. those from rumen content and feed were all assigned to type a. the consensus and atypical variants of the cpb gene were detected in and of all isolates from feces, and and of all isolates from rumen content, respectively.  both allelic variants of cpb occurred frequently in animals without signs of acute enteric disease, whereby the atypical variant dominated. five of all type a isolates were positive for the cpe gene. therefore, the present study indicates that dairy cows are no primary source for potentially human pathogenic enterotoxin gene positive strains. keywords c. perfringensdairy farmscattletoxin-genotyperumen contenthttp://dx.doi.org/ /501100005908bundesministerium für ernährung und landwirtschaft2810hs0052810hs036seyboldt christian abdulmawjood amir issue-copyright-statement© the author 2016 