1 ARCHAEA 671 seqs
1.1 EURYARCHAEOTA 482 seqs
1.1.1 METHANOCOCCALES 25 seqs
1.1.1.1 MC.JANNASCHII_GROUP 22 seqs
1.1.1.1.1225 OTU 1 seq
prokMSA_id:21 AB019743 clone pMC2A5
1.1.1.1.1236 OTU 1 seq
prokMSA_id:26 M59128 Methanococcus thermolithotrophicus str. SN-1 DSM 2095
1.1.1.1.19009 OTU 1 seq
prokMSA_id:48249 AB057722 Methanothermococcus okinawensis 
1.1.1.1.25940 OTU 2 seqs
prokMSA_id:1 L77117 Methanococcus jannaschii =
prokMSA_id:5 L77117 Methanococcus jannaschii =rrnB
1.1.1.1.31 OTU 1 seq
prokMSA_id:4 AB019749 clone pISA18
1.1.1.1.38508 OTU 3 seqs
prokMSA_id:69659 AF356632 clone G26_C49 
prokMSA_id:69745 AF356629 clone G26_C45 
prokMSA_id:73911 AF356628 clone G26_C5 
1.1.1.1.42101 OTU 3 seqs
prokMSA_id:15 AB019739 clone pMC2A10
prokMSA_id:56356 AF356635 clone G26_C56 
prokMSA_id:68328 AF356637 clone G26_C73 
1.1.1.1.42109 OTU 9 seqs
prokMSA_id:16 AF056938 Methanocaldococcus fervens str. AG86 DSM 4213
prokMSA_id:17 AF051404 Methanocaldococcus vulcanius str. M7
prokMSA_id:20 AF025822 Methanococcus infernus str. ME DSM 11812
prokMSA_id:68330 AF356636 clone G26_C63 
prokMSA_id:68331 AF356633 clone G26_C50 
prokMSA_id:68332 AF356630 clone G26_C46 
prokMSA_id:68333 AF356634 clone G26_C51 
prokMSA_id:70924 AF356638 clone G26_C82 
prokMSA_id:81740 AF547621 Methanocaldococcus indiensis 
1.1.1.1.9986 OTU 1 seq
prokMSA_id:73906 AB050210 SAGMA-F 
1.1.1.2 MC.MARIPALUDIS_GROUP 3 seqs
1.1.1.2.11005 OTU 1 seq
prokMSA_id:36765 AF306670 Methanococcus sp. P2F9701a 
1.1.1.2.28768 OTU 2 seqs
prokMSA_id:37 M36507 Methanococcus vannielii str. EY33
prokMSA_id:43 AF005049 Methanococcus maripaludis str. LL
1.1.2 METHANOBACTERIALES 69 seqs
1.1.2.1 MT.FERVIDUS_GROUP 7 seqs
1.1.2.1.1266 OTU 1 seq
prokMSA_id:46 M32222 Methanothermus fervidus
1.1.2.1.1268 OTU 1 seq
prokMSA_id:49 AF119139 unnamed organism
1.1.2.1.1281 OTU 1 seq
prokMSA_id:50 AJ133622 clone KTK 9A
1.1.2.1.1284 OTU 1 seq
prokMSA_id:51 AJ133623 clone KTK 18A
1.1.2.1.1286 OTU 1 seq
prokMSA_id:52 AJ133624 clone KTK 28A
1.1.2.1.1287 OTU 1 seq
prokMSA_id:54 AB019736 clone pMC2A24
1.1.2.1.19860 OTU 1 seq
prokMSA_id:18294 AJ347790 SA2 group euryarchaeote clone ST-12K24A
1.1.2.2 METHANOBACTERIUM_GROUP 62 seqs
1.1.2.2.1 MB.FORMICICUM_SUBGROUP 37 seqs
1.1.2.2.1.1288 OTU 1 seq
prokMSA_id:57 M59139 Methanosphaera stadtmanae str. MCB-3 DSM 3091
1.1.2.2.1.18673 OTU 1 seq
prokMSA_id:16893 AB050214 SAGMA-J 
1.1.2.2.1.18724 OTU 1 seq
prokMSA_id:33106 AJ347784 SA1 group euryarchaeote clone ST-12K10A
1.1.2.2.1.32139 OTU 4 seqs
prokMSA_id:17811 AJ347782 SA1 group euryarchaeote clone ST-12K11A
prokMSA_id:24075 AJ347779 SA1 group euryarchaeote clone ST-3K26A
prokMSA_id:32440 AJ347783 SA1 group euryarchaeote clone ST-12K28A
prokMSA_id:52466 AJ347780 SA1 group euryarchaeote clone ST-3K1A
1.1.2.2.1.3608 OTU 1 seq
prokMSA_id:41854 AJ347785 SA1 group euryarchaeote clone ST-3K54A
1.1.2.2.1.41054 OTU 18 seqs
prokMSA_id:115 AB017514 Methanobrevibacter sp. str. MB-9
prokMSA_id:133 X99044 Methanobacterium subterraneum str. A8p DSM 11074
prokMSA_id:134 AF028689 Methanobacterium formicicum str. FCam
prokMSA_id:136 X99045 Methanobacterium subterraneum str. C2BIS DSM 11075
prokMSA_id:139 U82322 Methanobrevibacter filiformis str. RFM-3 DSM 11501
prokMSA_id:150 U62533 Methanobrevibacter curvatus str. RFM-2 DSM 11111
prokMSA_id:179 Y18073 Methanobacterium sp. str. Bab-1
prokMSA_id:198 M36508 Methanobacterium formicicum DSM 1312
prokMSA_id:203 U81775 clone vadinDC06
prokMSA_id:21086 AB034188 rumen methanogen 15 
prokMSA_id:24205 AJ132639 methanogenic endosymbiont of Nyctotherus ovalis 
prokMSA_id:24414 AB065294 Methanobrevibacter arboriphilus 
prokMSA_id:38084 AB034183 rumen methanogen 956 
prokMSA_id:40123 AF028690 Methanobacterium sp. DSM 11106 complete 
prokMSA_id:44183 AF233586 Methanobacterium congolense 
prokMSA_id:77878 AJ459882 Methanobacteriaceae clone AEC 3 M71
prokMSA_id:77966 AJ459884 Methanobacteriaceae clone AEC 2 M46
prokMSA_id:78121 AJ459876 Methanobacteriaceae clone AMC 3 M14
1.1.2.2.1.41601 OTU 11 seqs
prokMSA_id:77 U55233 Methanobrevibacter smithii str. PS DSM 861
prokMSA_id:86 U55237 Methanobrevibacter sp. str. GS DSM 11979
prokMSA_id:114 AJ009959 Methanobrevibacter sp. str. NT7
prokMSA_id:122 U55234 Methanobrevibacter smithii str. ALI
prokMSA_id:123 U55235 Methanobrevibacter smithii str. B181 DSM 11975
prokMSA_id:125 U55238 Methanobrevibacter sp. str. HO DSM 11977
prokMSA_id:127 U55240 Methanobrevibacter sp. str. SH DSM 11976
prokMSA_id:128 U55241 Methanobrevibacter sp. str. RT
prokMSA_id:130 AJ009958 Methanobrevibacter sp. str. SM9
prokMSA_id:18599 AF276958 Methanobacterium curvum 
prokMSA_id:29783 AB034185 rumen methanogen M6 
1.1.2.2.2 MB.THERMOAUTOTROPHICUM_SUBGROUP 25 seqs
1.1.2.2.2.16823 OTU 1 seq
prokMSA_id:237 AF119128 unnamed organism
1.1.2.2.2.16850 OTU 1 seq
prokMSA_id:249 AB019754 clone pMC1A4
1.1.2.2.2.33311 OTU 21 seqs
prokMSA_id:216 X99048 Methanothermobacter thermophilus str. M VKM B-1786
prokMSA_id:219 X68716 Methanobacterium thermoautotrophicum str. CSM3
prokMSA_id:221 X68715 Methanobacterium thermoautotrophicum str. FF3
prokMSA_id:222 X68717 Methanobacterium thermoautotrophicum str. CB12 OCM 36
prokMSA_id:223 X15364 Methanobacterium thermoautotrophicum str. Marburg
prokMSA_id:225 X99047 Methanothermobacter thermoflex str. IDZ VKM B-1963
prokMSA_id:226 X68714 Methanobacterium thermoautotrophicum str. FF1
prokMSA_id:227 Z37156 Methanobacterium thermoautotrophicum str. ZH3 DSM 9446
prokMSA_id:233 AB020530 Methanobacterium thermoautotrophicum str. KHT-2
prokMSA_id:234 X68711 Methanobacterium thermoautotrophicum str. THF
prokMSA_id:235 X68719 Methanobacterium thermoautotrophicum str. HN4
prokMSA_id:236 X99046 Methanothermobacter defluvii str. ADZ VKM B-1962
prokMSA_id:238 AE000666 Methanobacterium thermoautotrophicum str. delta H
prokMSA_id:239 H. X68720 Methanobacterium thermoautotrophicum str. delta
prokMSA_id:241 X68712 Methanobacterium thermoautotrophicum str. Z-245 DSM 3720
prokMSA_id:242 AE000666 Methanobacterium thermoautotrophicum str. delta H
prokMSA_id:251 X68713 Methanobacterium thermoautotrophicum str. FTF
prokMSA_id:44111 AE000930 Methanobacterium thermoautotrophicum from bases 1592014 to 1
prokMSA_id:45830 AE000940 Methanobacterium thermoautotrophicum from bases 1709212 to 1
prokMSA_id:49751 NC_000916 Methanobacterium thermoautotrophicum str. Delta H complete g
prokMSA_id:81334 AB104858 Methanothermobacter wolfeii 
1.1.2.2.2.8354 OTU 1 seq
prokMSA_id:67146 AB084241 clone:LCB
1.1.2.2.2.8358 OTU 1 seq
prokMSA_id:67147 AB084240 clone:LCA
1.1.3 METHANOMICROBACTERIA_AND_RELATIVES 306 seqs
1.1.3.1 METHANOMICROBIALES 32 seqs
1.1.3.1.1 MCU.BOURGENSE_SUBGROUP 25 seqs
1.1.3.1.1.16873 OTU 1 seq
prokMSA_id:252 M59143 Methanoplanus limicola str. M3 DSM 2279
1.1.3.1.1.16903 OTU 1 seq
prokMSA_id:265 M59131 Methanogenium organophilum str. CV DSM 3596
1.1.3.1.1.16901 OTU 1 seq
prokMSA_id:260 U76631 Methanoplanus petrolearius SEBR 4847
1.1.3.1.1.20618 OTU 1 seq
prokMSA_id:62887 AB077222 Methanomicrobiales clone:KuA12
1.1.3.1.1.32108 OTU 2 seqs
prokMSA_id:257 M59142 Methanomicrobium mobile str. BP DSM 1539
prokMSA_id:50770 AB034182 rumen methanogen Hole9 
1.1.3.1.1.34586 OTU 7 seqs
prokMSA_id:298 AB008853 unnamed organism
prokMSA_id:299 AF033672 Methanocalculus halotolerans SEBR 4845
prokMSA_id:19259 AF347025 Methanocalculus sp. K1F9705b 
prokMSA_id:41198 AF321115 Methanocalculus sp. K1F9705c 
prokMSA_id:42125 AF172443 Methanocalculus taiwanense strain P2F9704a 
prokMSA_id:45899 AF411470 Methanocalculus halotolerans strain P2F9705 
prokMSA_id:74785 AY026256 Methanocalculus sp. O1F9702c 
1.1.3.1.1.35085 OTU 8 seqs
prokMSA_id:267 Y16382 Methanoculleus palmolei str. INSLUZ DSM 4273
prokMSA_id:294 M59134 Methanoculleus marisnigri str. JR1 ATCC 35101
prokMSA_id:295 AF028693 Methanoculleus marisnigri str. CoCam
prokMSA_id:304 M59129 Methanoculleus thermophilicus str. TCI DSM 3915
prokMSA_id:26720 AB038795 Methanoculleus chikugoensis strain:MG62
prokMSA_id:67141 AB084243 clone:LCD
prokMSA_id:69300 AB065298 Methanoculleus oldenburgensis 
prokMSA_id:70145 AF531178 Methanoculleus submarinus 
1.1.3.1.1.42172 OTU 4 seqs
prokMSA_id:269 AF050617 clone WCHD3-07
prokMSA_id:28545 AF424766 19-1 
prokMSA_id:37119 AF424773 57-1 
prokMSA_id:50440 AF423187 Toluene-degrading methanogenic consortium M1 
1.1.3.1.2 MF.TATIONIS_SUBGROUP 3 seqs
1.1.3.1.2.14549 OTU 1 seq
prokMSA_id:22804 AF262035 Methanofollis sp. N2F9704 
1.1.3.1.2.32090 OTU 2 seqs
prokMSA_id:328 Y16428 Methanofollis liminatans str. GKZPZ DSM 4140
prokMSA_id:329 Y16429 Methanofollis liminatans DSM 10196
1.1.3.1.3 MSP.HUNGATEI_SUBGROUP 2 seqs
1.1.3.1.3.32187 OTU 2 seqs
prokMSA_id:336 M60880 Methanospirillum hungatei str. JF1 DSM 864
prokMSA_id:343 AJ133792 Methanospirillum sp
1.1.3.1.4 MCR.PARVUM_SUBGROUP 2 seqs
1.1.3.1.4.32262 OTU 2 seqs
prokMSA_id:39974 AY057068 Methanocorpusculum parvum strain IF9601b 
prokMSA_id:71599 AF419634 C1_R002 
1.1.3.2 METHANOSARCINALES 64 seqs
1.1.3.2.1 METHANOSARCINA_AND_RELATIVES 40 seqs
1.1.3.2.1.11690 OTU 1 seq
prokMSA_id:36837 AB034189 rumen methanogen 2 
1.1.3.2.1.12644 OTU 1 seq
prokMSA_id:68322 AF356643 clone G72_C12 
1.1.3.2.1.12653 OTU 1 seq
prokMSA_id:68326 AF356639 clone G72_C1 
1.1.3.2.1.18238 OTU 1 seq
prokMSA_id:403 AJ012742 Methanosarcina semesii str. MD1
1.1.3.2.1.18287 OTU 1 seq
prokMSA_id:428 AB019737 clone pMC2A203
1.1.3.2.1.18288 OTU 1 seq
prokMSA_id:429 AB019738 clone pMC2A33
1.1.3.2.1.18410 OTU 1 seq
prokMSA_id:475 AJ238648 str. GS1-A
1.1.3.2.1.18983 OTU 1 seq
prokMSA_id:516 AJ238002 Methanomicrococcus blatticolus str. PA
1.1.3.2.1.32812 OTU 4 seqs
prokMSA_id:36504 AF354140 isolate Eel-36a2B9 
prokMSA_id:69820 AF354128 isolate Eel-36a2A4 
prokMSA_id:72991 AF354135 isolate SB-24a1H2 
prokMSA_id:73643 AF354138 isolate SB-24a1C12 
1.1.3.2.1.32919 OTU 2 seqs
prokMSA_id:69934 AF354130 isolate SB-24a1B11 
prokMSA_id:73952 AF354134 isolate SB-24a1F10 
1.1.3.2.1.34446 OTU 7 seqs
prokMSA_id:426 X65537 Methanococcoides burtonii DSM 6242
prokMSA_id:40857 AF354132 isolate SB-24a1C2 
prokMSA_id:44725 Y16946 Methanococcoides sp. strain NaT1
prokMSA_id:48567 AJ276437 Methanomethylovorans victoriae strain TM
prokMSA_id:62890 AB077216 Methanomethylovorans sp. clone:KuA6
prokMSA_id:66897 AJ312013 clone SHB-143
prokMSA_id:70903 AF354136 isolate Eel-36a2H11 
1.1.3.2.1.41973 OTU 17 seqs
prokMSA_id:373 AJ012095 Methanosarcina mazei str. C16 DSM 2053
prokMSA_id:374 AF028691 Methanosarcina mazei str. SarPi
prokMSA_id:380 U81776 clone vadinDA05
prokMSA_id:439 X69874 Methanosarcina mazei str. Go1
prokMSA_id:472 U89773 Methanosarcina siciliae str. C2J
prokMSA_id:476 AF020341 Methanosarcina FR str. FR
prokMSA_id:490 AJ012094 Methanosarcina barkeri str. MS DSM 800
prokMSA_id:491 AF028692 Methanosarcina barkeri str. Sar
prokMSA_id:498 U81777 clone vadinCA25
prokMSA_id:514 AJ002476 Methanosarcina barkeri str. CM1
prokMSA_id:18470 AF411467 Methanosarcina mazei strain O1M9704b 
prokMSA_id:18827 AF411469 Methanosarcina mazei strain O1M9701 
prokMSA_id:30939 AB065295 Methanosarcina mazei 
prokMSA_id:55681 NC_003552 Methanosarcina acetivorans str. C2A complete genome
prokMSA_id:67692 AE010754 Methanosarcina acetivorans str. C2A section 99 of 534 of the
prokMSA_id:67693 AE011184 Methanosarcina acetivorans str. C2A section 529 of 534 of th
prokMSA_id:67694 AE010833 Methanosarcina acetivorans str. C2A section 178 of 534 of th
1.1.3.2.1.7752 OTU 1 seq
prokMSA_id:73685 AF419643 C1_R046 
1.1.3.2.1.8319 OTU 1 seq
prokMSA_id:67139 AB084244 clone:LCE
1.1.3.2.2 METHANOSAETA 16 seqs
1.1.3.2.2.19004 OTU 1 seq
prokMSA_id:526 AF119123 unnamed organism
1.1.3.2.2.20619 OTU 1 seq
prokMSA_id:62889 AB077217 Methanosarcinales clone:KuA7
1.1.3.2.2.34305 OTU 11 seqs
prokMSA_id:532 AF050611 Methanosaeta WCHD3-03
prokMSA_id:538 AJ009508 clone SJC-11b
prokMSA_id:539 AJ009509 clone SJC-125a
prokMSA_id:19676 AF229774 TA01 
prokMSA_id:22948 AF423188 Toluene-degrading methanogenic consortium M2 
prokMSA_id:25452 AF424772 120A-4 
prokMSA_id:32447 AF424767 61-2 
prokMSA_id:49668 AF229777 TA04 
prokMSA_id:62894 AB077211 Methanosaeta sp. clone:KuA1
prokMSA_id:66894 AJ312015 clone SHB-23
prokMSA_id:67140 AB084242 clone:LCC
1.1.3.2.2.34559 OTU 2 seqs
prokMSA_id:533 AF050620 clone WCHD3-34
prokMSA_id:41595 AJ308972 euryarchaeote clone AS04-16
1.1.3.2.2.3778 OTU 1 seq
prokMSA_id:27475 AJ133791 Methanosaeta sp. Clone A1
1.1.3.2.99 VARIOUS 8 seqs
1.1.3.2.99.34101 OTU 8 seqs
prokMSA_id:41219 AF354142 isolate SB-17a1D3 
prokMSA_id:69806 AF419647 CS_R012 
prokMSA_id:70991 AF354129 isolate Eel-36a2A1 
prokMSA_id:71136 AF354131 isolate SB-24a1A12 
prokMSA_id:72394 AF354141 isolate SB-17a1B11 
prokMSA_id:73069 AF419635 C1_R004 
prokMSA_id:74281 AF354133 isolate Eel-36a2A5 
prokMSA_id:74364 AF419638 C1_R019 
1.1.3.4 HALOPHILIC_ARCHAEA 138 seqs
1.1.3.4.2 HF.VOLCANII_SUBGROUP 13 seqs
1.1.3.4.2.26582 OTU 2 seqs
prokMSA_id:609 AF002984 Halogeometricum borinquense str. PR 3 ATCC 700274
prokMSA_id:42829 AJ276863 Halophilic PalaeII strain PalaeII
1.1.3.4.2.30491 OTU 2 seqs
prokMSA_id:39318 X84331 Unknown PCR fragment of an archaeal microorganism
prokMSA_id:43013 X84084 Unknown organism 
1.1.3.4.2.32569 OTU 9 seqs
prokMSA_id:600 D11107 Haloferax mediterranei ATCC 33500
prokMSA_id:603 D14128 Haloferax denitrificans ATCC 35960
prokMSA_id:604 K00421 Haloferax volcanii str. DS-2 ATCC 29605
prokMSA_id:608 AF069950 Haloferax D1227 str. D1227
prokMSA_id:610 D13378 Haloferax gibbonsii ATCC 33959
prokMSA_id:25672 AB074566 Haloferax volcanii 
prokMSA_id:47309 AB037474 Haloferax alexandrinus complete 
prokMSA_id:71072 D14128 Haloferax denitrificans complete 
prokMSA_id:74464 D13378 Haloferax gibbonsii complete 
1.1.3.4.3 HR.SACCHAROVORUM_SUBGROUP 17 seqs
1.1.3.4.3.19732 OTU 1 seq
prokMSA_id:623 X53570 Halorubrum saccharovorum NCIMB 2081
1.1.3.4.3.41235 OTU 12 seqs
prokMSA_id:612 L00922 Halobacterium sp. str. Ch2 ACM 3911
prokMSA_id:613 D32081 Halobacterium AUS-1
prokMSA_id:615 D63572 Halorubrum distributum str. I-M JCM 9100
prokMSA_id:616 X82168 Halorubrum trapanicum NRC 34021
prokMSA_id:617 D32082 Halobacterium AUS-2
prokMSA_id:618 X82169 Halorubrum sodomense str. RD-26 ATCC 33755
prokMSA_id:622 D13379 Halorubrum sodomense str. RD-26 ATCC 33755
prokMSA_id:627 X82170 Halorubrum lacusprofundi ACAM 34
prokMSA_id:632 U17365 Halorubrum lacusprofundi JCM 8891
prokMSA_id:42756 S70839 Halobacterium=halophilic Ch2 Genomic 1469 nt
prokMSA_id:43177 AJ400624 Halophilic NaxosII strain NaxosII
prokMSA_id:71191 D13379 Halobacterium sodomense complete 
1.1.3.4.3.42269 OTU 4 seqs
prokMSA_id:625 U17364 Halorubrum saccharovorum JCM 8865
prokMSA_id:626 D87972 Halorubrum vacuolatum str. M24 JCM 9060
prokMSA_id:23129 AJ270251 Haloarchaeon str. 54R strain 54R
prokMSA_id:35867 AJ270246 Haloarchaeon str. MAlk006.3 strain MAlk006.3
1.1.3.4.4 HB.HALOBIUM_SUBGROUP 22 seqs
1.1.3.4.4.145 OTU 1 seq
prokMSA_id:49296 AJ347778 euryarchaeote clone ST-3K67A
1.1.3.4.4.40362 OTU 21 seqs
prokMSA_id:633 X03407 Halobacterium halobium str. R1
prokMSA_id:634 M11583 Halobacterium halobium str. R1
prokMSA_id:635 AF110768 Halobacterium 9R str. 9R
prokMSA_id:636 U68538 Halobacterium salinarum str. E12
prokMSA_id:637 M38280 Halobacterium halobium
prokMSA_id:640 D14127 Halobacterium sp. str. Y12
prokMSA_id:641 K02971 Halobacterium cutirubrum str. clone lambda-Hc4
prokMSA_id:23901 AB074565 Halobacterium sp. NCIMB 741 
prokMSA_id:32933 AE005128 Halobacterium sp. NRC-1 section 159 of 170 of the complete g
prokMSA_id:38000 AJ270239 Haloarchaeon str. BbpA.1 strain BbpA.1
prokMSA_id:40871 AB074301 Halobacterium sp. NCIMB 733 
prokMSA_id:44211 AJ270238 Haloarchaeon str. B1bra.5 strain B1bra.5
prokMSA_id:47635 AF355101 Halobacterium sp. JP-6 
prokMSA_id:48009 AE004437 Halobacterium sp. NRC-1 complete genome
prokMSA_id:50435 AB074299 Halobacterium salinarum 
prokMSA_id:54099 NC_002607 Halobacterium sp. NRC-1 complete genome
prokMSA_id:56380 AH000908 H.cutirubrum cluster and Ala-tRNA complete; 23S 5' end
prokMSA_id:63193 AJ496185 Halobacterium salinarum strain DSM 3754T
prokMSA_id:68649 AB081731 Halobacterium sp. JCM 9447 
prokMSA_id:70968 D14127 Halobacterium sp. complete 
prokMSA_id:81508 AJ548827 Halobacterium sp. A1 
1.1.3.4.5 NTM.PHARAONIS 1 seq
1.1.3.4.5.19802 OTU 1 seq
prokMSA_id:643 D87971 Natronomonas pharaonis str. Gabara JCM 8858
1.1.3.4.6 NTC.AMYLOLYTICUS_SUBGROUP 54 seqs
1.1.3.4.6.19805 OTU 1 seq
prokMSA_id:645 AB009624 Halobacterium sp. str. arg-4
1.1.3.4.6.19836 OTU 1 seq
prokMSA_id:651 AB012053 str. MSP12
1.1.3.4.6.2369 OTU 1 seq
prokMSA_id:33887 X92171 sp. Lake Magadi isolate 82M4
1.1.3.4.6.32228 OTU 6 seqs
prokMSA_id:649 AB012049 str. MSP1
prokMSA_id:650 AB012052 str. MSP11
prokMSA_id:653 AB012055 str. MSP16
prokMSA_id:654 AB012056 str. MSP17
prokMSA_id:655 AB012057 str. MSP22
prokMSA_id:656 AB012058 str. MSP23
1.1.3.4.6.35820 OTU 33 seqs
prokMSA_id:644 D14125 Halorubrum trapanicum NCIMB 767
prokMSA_id:646 AF115478 Natrinema thermotolerans str. PR 5
prokMSA_id:647 AF027738 Halorubrum trapanicum NCMB 784
prokMSA_id:657 Y14028 Natronorubrum bangense str. A33 AS 1.1984
prokMSA_id:665 AB004878 Haloterrigena turkmenica str. 4 VKM B-1734
prokMSA_id:666 D14126 str. L-11
prokMSA_id:670 D14124 str. B1T
prokMSA_id:671 AJ004806 Natronobacterium chahannaoensis str. C112
prokMSA_id:672 D88256 Natrialba ATCC 43988 str. SSL1 ATCC 43988
prokMSA_id:673 D14123 str. 172P1
prokMSA_id:674 Z28378 Natronococcus occultus ATCC 43101
prokMSA_id:21979 AB046875 Natrialba asiatica 
prokMSA_id:24766 AB023426 Natrinema versiforme 
prokMSA_id:28138 AB049461 Natrialba sp. Tunisia HMg-25 complete 
prokMSA_id:28549 AB046927 Natronorubrum sp. Tenzan-10 
prokMSA_id:30847 AF424771 38B-1 
prokMSA_id:32045 X92173 sp. Little Lake Magadi isolate 93lLM4
prokMSA_id:32775 AF424774 41-1 
prokMSA_id:32934 X92172 sp. Lake Magadi isolate 89M4
prokMSA_id:34918 D87970 Natronobacterium gregoryi 
prokMSA_id:36767 AB049462 Natrialba sp. Tunisia HMg-27 
prokMSA_id:37730 AF333759 Halobacteriaceae gen. sp. 56 
prokMSA_id:38317 AF251941 Natrialba aegyptiaca complete 
prokMSA_id:40112 AF478471 Halobacteriaceae gen. sp. H1 
prokMSA_id:43132 AF333760 Halobacteriaceae gen. sp. 135 
prokMSA_id:45943 AF367370 Natrinema sp. R-fish 
prokMSA_id:47016 AB046926 Natronorubrum sp. Wadi Natrun-19 
prokMSA_id:58987 AY055733 Haloterrigena thermotolerans 
prokMSA_id:72038 D14123 Natrialba asiatica 
prokMSA_id:72482 D14125 Halobacterium trapanicum complete 
prokMSA_id:73832 D14124 Natrialba asiatica 
prokMSA_id:74122 D14126 Halophilic archaeum complete 
prokMSA_id:81102 AY208972 Natrinema ajinwuensis 
1.1.3.4.6.359 OTU 1 seq
prokMSA_id:42055 X92175 sp. Lake Magadi isolate 86M4
1.1.3.4.6.40035 OTU 9 seqs
prokMSA_id:660 AB005656 Natronobacterium tibetense str. GA33
prokMSA_id:668 X72495 Natrialba magadii NCIMB 2190
prokMSA_id:669 AJ001376 Natronobacterium wudunaoensis str. Y21
prokMSA_id:675 D43628 Natronococcus amylolyticus str. Ah-36 JCM 9655
prokMSA_id:43283 X92174 sp. Lake Natron isolate 98NT4
prokMSA_id:51196 AF009601 Natronobacterium innermongoliae 
prokMSA_id:52324 AF251285 Natronococcus xinjiangense 
prokMSA_id:58361 AJ003193 Natronobacterium chagannuoerensis 
prokMSA_id:72475 AF262026 Natrialba hulunbeirensis AS1.1986 
1.1.3.4.6.6999 OTU 1 seq
prokMSA_id:36299 AB073366 Halobacterium cutirubrum NCIMB 763 rrnB operon
1.1.3.4.6.87 OTU 1 seq
prokMSA_id:18525 X92170 sp. Little Lake Magadi isolate 93dLM4
1.1.3.4.7 HC.MORRHUAE_SUBGROUP 14 seqs
1.1.3.4.7.24925 OTU 8 seqs
prokMSA_id:686 D11106 Halococcus morrhuae NRC 16008
prokMSA_id:687 X72588 Halococcus morrhuae
prokMSA_id:688 D63786 Halorubrum trapanicum JCM 8979
prokMSA_id:689 X00662 Halococcus morrhuae str. LD.3.1 C.B. van Niel ATCC 17082
prokMSA_id:17584 AB074302 Halobacterium sp. NCIMB 734 
prokMSA_id:27023 AB074304 Halobacterium sp. NCIMB 765 rrnB operon
prokMSA_id:38435 AB074303 Halobacterium sp. NCIMB 765 operon
prokMSA_id:39472 AJ420376 Halococcus dombrowskii strain H4
1.1.3.4.7.31604 OTU 4 seqs
prokMSA_id:678 AB004877 Halococcus salifodinae str. Blp DSM 8989
prokMSA_id:679 AJ238897 Halococcus salifodinae str. Br3
prokMSA_id:684 AJ131458 Halococcus salifodinae str. BG 2/2
prokMSA_id:685 AB004876 Halococcus saccharolyticus ATCC 49257
1.1.3.4.7.370 OTU 1 seq
prokMSA_id:17995 AB074300 Halobacterium sp. NCIMB 718 
1.1.3.4.7.5101 OTU 1 seq
prokMSA_id:73359 Z28387 Halococcus sp
1.1.3.4.8 HAR.VALLISMORTIS_SUBGROUP 17 seqs
1.1.3.4.8.15986 OTU 1 seq
prokMSA_id:39389 AB074564 Halobacterium sp. NCIMB 720 rrnB operon
1.1.3.4.8.17583 OTU 1 seq
prokMSA_id:47411 AF320480 Halosimplex carlsbadense C 
1.1.3.4.8.19946 OTU 1 seq
prokMSA_id:690 D50850 Haloarcula mukohataei
1.1.3.4.8.19947 OTU 1 seq
prokMSA_id:692 AB012059 str. MSP41
1.1.3.4.8.19952 OTU 1 seq
prokMSA_id:696 AF071880 Halobacter utahensis str. AX-2
1.1.3.4.8.32279 OTU 2 seqs
prokMSA_id:20446 AF320478 Halosimplex carlsbadense A 
prokMSA_id:21614 AF320479 Halosimplex carlsbadense B 
1.1.3.4.8.32599 OTU 10 seqs
prokMSA_id:695 AB010965 Haloarcula sp. str. 801030/1
prokMSA_id:698 D14130 Haloarcula sinaiiensis ATCC 33800
prokMSA_id:699 D14129 Haloarcula sinaiiensis ATCC 33800
prokMSA_id:702 AB000563 Haloarcula aidinensis str. B-2
prokMSA_id:703 D50849 Haloarcula argentinensis
prokMSA_id:704 AB010964 Haloarcula sp. str. 801030/1
prokMSA_id:18654 AB074563 Halobacterium sp. NCIMB 720 operon
prokMSA_id:23836 AB074562 Halobacterium sp. NCIMB 714 rrnB operon
prokMSA_id:27305 AB074561 Halobacterium sp. NCIMB 714 operon
prokMSA_id:73483 D14129 Haloarcula sinaiiensis complete 
1.1.3.5 THERMOPLASMALES_AND_RELATIVES 39 seqs
1.1.3.5.1 TPL.ACIDOPHILUM_SUBGROUP 39 seqs
1.1.3.5.1.10583 OTU 1 seq
prokMSA_id:22294 AF255608 Crenarchaeote SRI-298 
1.1.3.5.1.12542 OTU 1 seq
prokMSA_id:76154 AB062320 archaeal symbiont PA203 
1.1.3.5.1.18208 OTU 1 seq
prokMSA_id:32461 AF325184 clone A10 
1.1.3.5.1.18904 OTU 1 seq
prokMSA_id:63280 AF523936 clone ARCP1-21 
1.1.3.5.1.18907 OTU 1 seq
prokMSA_id:63282 AF523939 clone ARCP1-30 
1.1.3.5.1.20140 OTU 1 seq
prokMSA_id:71237 AF523941 clone ARCP1-60 
1.1.3.5.1.20572 OTU 1 seq
prokMSA_id:713 U78206 clone SB95-72
1.1.3.5.1.20574 OTU 1 seq
prokMSA_id:715 AJ133625 clone KTK 31A
1.1.3.5.1.20573 OTU 1 seq
prokMSA_id:714 AJ133621 clone KTK 4A
1.1.3.5.1.20570 OTU 1 seq
prokMSA_id:710 X84901 Picrophilus oshimae str. KAW2/2 DSM 9789
1.1.3.5.1.20606 OTU 1 seq
prokMSA_id:724 U81778 clone vadinCA11
1.1.3.5.1.28245 OTU 2 seqs
prokMSA_id:720 AJ224936 Ferromonas metallovorans str. Y
prokMSA_id:29649 AF232925 MS14 
1.1.3.5.1.31362 OTU 2 seqs
prokMSA_id:34273 AB034186 rumen M2 
prokMSA_id:52339 AB034184 rumen M7 
1.1.3.5.1.31843 OTU 4 seqs
prokMSA_id:712 AF050619 clone WCHD3-33
prokMSA_id:722 AF050616 clone WCHD3-02
prokMSA_id:45960 AF424770 33-1 
prokMSA_id:62881 AB077226 euryarchaeote clone:KuA16
1.1.3.5.1.33150 OTU 6 seqs
prokMSA_id:721 M38637 Thermoplasma acidophilum str. 122-1B2
prokMSA_id:27173 AF339746 Thermoplasma volcanium 
prokMSA_id:46145 NC_002689 Thermoplasma volcanium complete genome
prokMSA_id:47351 AJ299215 Thermoplasma volcanium strain GSS1
prokMSA_id:47977 NC_002578 Thermoplasma acidophilum complete genome
prokMSA_id:68998 AP000996 Thermoplasma volcanium genomic complete section 6/6
1.1.3.5.1.33751 OTU 2 seqs
prokMSA_id:719 AB019740 clone pSSMCA108
prokMSA_id:732 AB019742 clone pISA42
1.1.3.5.1.33939 OTU 2 seqs
prokMSA_id:723 U81773 clone vadinDC79
prokMSA_id:44971 AB034187 rumen M1 
1.1.3.5.1.3520 OTU 1 seq
prokMSA_id:65352 AF513710 Ferroplasma sp. MT17 
1.1.3.5.1.3585 OTU 1 seq
prokMSA_id:58151 AF544221 clone AS10 
1.1.3.5.1.3590 OTU 1 seq
prokMSA_id:58156 AF544219 clone AS1 
1.1.3.5.1.41026 OTU 2 seqs
prokMSA_id:58154 AF544224 clone ASL1 
prokMSA_id:63279 AF523940 clone ARCP1-28 
1.1.3.5.1.41914 OTU 2 seqs
prokMSA_id:56630 AF544223 clone AS4 
prokMSA_id:63281 AF523937 clone ARCP1-27 
1.1.3.5.1.42189 OTU 3 seqs
prokMSA_id:74993 AB062308 archaeal symbiont PA201 
prokMSA_id:76146 AB062311 archaeal symbiont PA204 
prokMSA_id:76707 AB062309 archaeal symbiont PA202 
1.1.3.6 ARCHAEOGLOBALES 33 seqs
1.1.3.6.18567 OTU 1 seq
prokMSA_id:39716 AF419656 AT_R040 
1.1.3.6.18780 OTU 1 seq
prokMSA_id:71091 AF354137 isolate Eel-36a2G10 
1.1.3.6.20671 OTU 1 seq
prokMSA_id:745 AB019744 clone pMC2A21
1.1.3.6.20702 OTU 1 seq
prokMSA_id:754 AB019735 clone pMC2A228
1.1.3.6.30007 OTU 3 seqs
prokMSA_id:743 X05567 Archaeoglobus fulgidus str. VC-16 DSM 4304
prokMSA_id:744 AE000782 Archaeoglobus fulgidus
prokMSA_id:755 Y00275 Archaeoglobus fulgidus str. VC-16
1.1.3.6.31831 OTU 2 seqs
prokMSA_id:72736 AF419632 GBa2r032 
prokMSA_id:72833 AF419631 GBa2r020 
1.1.3.6.35051 OTU 9 seqs
prokMSA_id:746 AB019758 clone pISA16
prokMSA_id:30999 AF419626 GBa2r045 
prokMSA_id:68319 AF356646 clone G72_C65 
prokMSA_id:68320 AF356644 clone G72_C59 
prokMSA_id:68325 AF356641 clone G72_C3 
prokMSA_id:70411 AF356640 clone G72_C2 
prokMSA_id:71148 AF419654 AT_R022 
prokMSA_id:71793 AF419625 GBa1r013 
prokMSA_id:72343 AF419624 GBa1r010 
1.1.3.6.40601 OTU 15 seqs
prokMSA_id:740 Y10011 Archaeoglobus veneficus str. SNP6 DSM 11195
prokMSA_id:750 AF068814 clone VC2.1 Arc2
prokMSA_id:751 AF068815 VC2.1 Arc4 complete 
prokMSA_id:752 AF068819 VC2.1 Arc8 complete 
prokMSA_id:753 AF068824 VC2.1 Arc36 complete 
prokMSA_id:32209 AF220166 Ferroglobus placidus 
prokMSA_id:33400 AF297529 Archaeoglobus profundus 
prokMSA_id:47919 AF322392 Archaeoglobus profundus 
prokMSA_id:53724 AJ299217 Ferroglobus placidus 23S and ITS1 strain AED II 12 DO
prokMSA_id:69844 Y10011 Archaeoglobus veneficus 23S and internal transcribed spacer 
prokMSA_id:71588 AJ299218 Archaeoglobus lithotrophicus TF2 23S and ITS1 strain TF2
prokMSA_id:71597 AJ299219 Archaeoglobus profundus 23S and ITS1 strain AV18
prokMSA_id:71722 AF418181 Archaeoglobus veneficus DSM 11195 
prokMSA_id:71750 AF419628 GBa1r015 
prokMSA_id:73240 AF220165 Hyperthermophile str. 234 
1.1.4 THERMOCOCCALES 77 seqs
1.1.4.2 TC.AGGREGANS 1 seq
1.1.4.2.20707 OTU 1 seq
prokMSA_id:757 Y08384 Thermococcus aggregans str. TY DSM 10597
1.1.4.3 PC.FURIOSUS_SUBGROUP 12 seqs
1.1.4.3.35162 OTU 10 seqs
prokMSA_id:758 Z54172 Pyrococcus sp
prokMSA_id:759 Z70246 Pyrococcus abyssi str. ST546
prokMSA_id:760 AJ225071 Pyrococcus abyssi str. ST549
prokMSA_id:761 L19921 Pyrococcus abyssi
prokMSA_id:762 AP000001 Pyrococcus horikoshii str. OT3
prokMSA_id:765 D87344 Pyrococcus horikoshii str. JA-1
prokMSA_id:766 U20163 Pyrococcus furiosus
prokMSA_id:767 AJ012642 Pyrococcus hellenicus str. P3BK17S6-3-a3
prokMSA_id:769 Z70247 Pyrococcus sp. str. AL585
prokMSA_id:70123 D87344 Pyrococcus horikoshii 
1.1.4.3.41661 OTU 2 seqs
prokMSA_id:763 D45214 Pyrococcus shinkaii str. OT3
prokMSA_id:73290 D45214 Pyrococcus horikoshii complete 
1.1.4.4 TC.CELER_SUBGROUP 64 seqs
1.1.4.4.14242 OTU 1 seq
prokMSA_id:38459 AJ291807 Thermococcus acidaminovorans strain DSM 11906
1.1.4.4.19826 OTU 1 seq
prokMSA_id:24840 AB050211 SAGMA-G 
1.1.4.4.20770 OTU 1 seq
prokMSA_id:771 AB019717 clone pMCA256
1.1.4.4.20773 OTU 1 seq
prokMSA_id:775 AB019751 clone pISA1
1.1.4.4.20772 OTU 1 seq
prokMSA_id:774 AB019747 clone pMC2A17
1.1.4.4.20771 OTU 1 seq
prokMSA_id:772 AB019719 clone pMC2A209
1.1.4.4.20809 OTU 1 seq
prokMSA_id:785 AB019745 clone pMC2A232
1.1.4.4.21410 OTU 1 seq
prokMSA_id:812 AF134982 Thermococcus waiotapuense str. WT1
1.1.4.4.30198 OTU 2 seqs
prokMSA_id:778 AB019714 clone pMC2A249
prokMSA_id:780 AB019716 clone pSSMCA1
1.1.4.4.38735 OTU 54 seqs
prokMSA_id:770 U82237 Thermococcus barophilus str. MP
prokMSA_id:777 Z70244 Thermococcus hydrothermalis str. AL662
prokMSA_id:784 M21529 Thermococcus celer str. VU 13 DSM 2476
prokMSA_id:786 Z75218 Thermococcus mexicalis str. GY 869
prokMSA_id:787 AB016298 Thermococcus sp. str. B1001
prokMSA_id:789 U76535 Thermococcus barossii
prokMSA_id:790 U76534 Thermococcus zilligii str. AN1
prokMSA_id:791 AJ012644 Thermococcus sp. strain P6 
prokMSA_id:792 AJ012643 Thermococcus aegeaicus str. P5BK17S6-3-b2
prokMSA_id:799 AF068813 VC2.1 Arc1 complete 
prokMSA_id:800 AF068816 VC2.1 Arc5 complete 
prokMSA_id:802 AF068821 VC2.1 Arc16 complete 
prokMSA_id:803 AF068823 VC2.1 Arc35 complete 
prokMSA_id:809 Z75233 Thermococcus profundus str. DT5432 DSM 9503
prokMSA_id:810 AF098975 Thermococcus waimanguensis str. Wai21.S1
prokMSA_id:811 AF017455 Thermococcus Rt3 str. Rt3
prokMSA_id:814 Z75240 Thermococcus stetteri str. K-3 DSM 5262
prokMSA_id:818 D38650 Pyrococcus sp. str. KOD1
prokMSA_id:819 Y08385 Thermococcus guaymasensis str. TYS JCM 10136
prokMSA_id:18391 AF479013 Thermococcus radiophilus 
prokMSA_id:19786 AB055127 Thermococcus waiotapuensis strain:JCM 10985
prokMSA_id:21914 AB055124 Thermococcus pacificus strain:JCM 10553
prokMSA_id:30578 AB055120 Thermococcus acidaminovorans strain:DSM 11906
prokMSA_id:30964 AB055123 Thermococcus gorgonarius strain:JCM 10552
prokMSA_id:31437 AJ291809 Thermococcus gorgonarius strain DSM 10395 
prokMSA_id:32059 AJ298871 Thermococcus peptonophilus strain DSM 10343
prokMSA_id:32192 AJ291810 Thermococcus peptonophilus strain DSM 10343 
prokMSA_id:33045 AB055126 Thermococcus siculi strain:DSM 12349
prokMSA_id:33569 E17110 Thermococcus sp. B-1001 
prokMSA_id:34206 AJ291811 Thermococcus pacificus strain DSM 10394 
prokMSA_id:34911 AB017920 Desulfurococcus sp. SY 
prokMSA_id:37193 AB055122 Thermococcus fumicolans strain:JCM 10128
prokMSA_id:41114 AJ298872 Thermococcus alcaliphilus strain DSM 10322
prokMSA_id:43730 AF479014 Thermococcus gammatolerans 
prokMSA_id:44360 AB055128 Thermococcus fumicolans strain:ST557
prokMSA_id:46577 AJ238992 Thermococcus sibiricus 
prokMSA_id:48271 AJ298870 Thermococcus siculi strain DSM 12349
prokMSA_id:48581 AJ291808 Thermococcus siculi strain DSM 12349 
prokMSA_id:48696 AB055121 Thermococcus alcaliphilus strain:DSM 10322
prokMSA_id:48762 AB055125 Thermococcus peptonophilus strain:JCM 9653
prokMSA_id:49071 sp E30964 of Thermococcus
prokMSA_id:54119 AY017171 Thermococcus sp. MZ2 ; internal transcribed spacer complete 
prokMSA_id:54189 AY017170 Thermococcus sp. MZ1 ; internal transcribed spacer complete 
prokMSA_id:54583 AY017180 Thermococcus sp. MZ12 ; internal transcribed spacer complete
prokMSA_id:54651 AY017174 Thermococcus sp. MZ5 ; internal transcribed spacer complete 
prokMSA_id:54665 AY017181 Thermococcus sp. MZ13 ; internal transcribed spacer complete
prokMSA_id:55014 AY017175 Thermococcus sp. MZ6 ; internal transcribed spacer complete 
prokMSA_id:58650 AJ419869 Thermococcus sp. MV1099 23S and ITS 1
prokMSA_id:58788 AY134472 Palaeococcus helgesonii ; -23S intergenic spacer complete ; 
prokMSA_id:68329 AF356631 clone G26_C48 
prokMSA_id:69804 AF419641 C1_R034 
prokMSA_id:71185 D38650 Thermococcus kodakaraensis genes 23S complete and sequences
prokMSA_id:73209 AF479012 Thermococcus marinus 
prokMSA_id:74471 AJ291812 Thermococcus alcaliphilus strain DSM 10322 
1.1.5 METHANOPYRALES 3 seqs
1.1.5.32195 OTU 3 seqs
prokMSA_id:822 M59932 Methanopyrus kandleri str. av19 DSM 6324
prokMSA_id:62897 AE010349 Methanopyrus kandleri AV19 section 48 of 157 of the complete
prokMSA_id:64372 NC_003551 Methanopyrus kandleri AV19 complete genome
1.1.99 VARIOUS 2 seqs
1.1.99.33606 OTU 2 seqs
prokMSA_id:26100 AB050209 SAGMA-E 
prokMSA_id:34194 AB050213 SAGMA-I 
1.2 CRENARCHAEOTA 189 seqs
1.2.1 THERMOPHILIC_CRENARCHAEOTA 98 seqs
1.2.1.2 ENVIRONMENTAL_CLONE_PJP33 1 seq
1.2.1.2.21442 OTU 1 seq
prokMSA_id:824 L25300 Mud Volcano area of Yellowstone NP "Black Pool" hot spring 
1.2.1.3 TMF.PENDENS_SUBGROUP 21 seqs
1.2.1.3.15699 OTU 1 seq
prokMSA_id:53714 AF325186 clone A14 
1.2.1.3.16119 OTU 1 seq
prokMSA_id:68897 AB050212 SAGMA-H 
1.2.1.3.21472 OTU 1 seq
prokMSA_id:830 AB019721 clone pMC2A308
1.2.1.3.21477 OTU 1 seq
prokMSA_id:838 U63341 clone pSL4
1.2.1.3.21478 OTU 1 seq
prokMSA_id:839 U63342 clone pSL50
1.2.1.3.21500 OTU 1 seq
prokMSA_id:849 AB007307 clone pUWA2
1.2.1.3.25808 OTU 5 seqs
prokMSA_id:34207 AF391990 thermal soil clone YNPFFA4 
prokMSA_id:36629 AF391992 thermal soil clone YNPFFA85 
prokMSA_id:37402 AF391989 thermal soil clone YNPFFA1 
prokMSA_id:41999 AF391991 thermal soil clone YNPFFA23 
prokMSA_id:45996 AF391993 thermal soil clone YNPFFA108 
1.2.1.3.2631 OTU 1 seq
prokMSA_id:73046 AF419633 GBa2r048 
1.2.1.3.30328 OTU 3 seqs
prokMSA_id:829 U81774 clone vadinDC69
prokMSA_id:835 U59986 clone pGrfC26
prokMSA_id:45742 AF424768 72-1 
1.2.1.3.32644 OTU 3 seqs
prokMSA_id:826 X14835 Thermofilum pendens str. Hvv3 DSM 2475
prokMSA_id:49927 AF255605 Thermofiliaceae str. SRI-370 
prokMSA_id:70948 AF176345 crenarchaeote pBA1 
1.2.1.3.42367 OTU 2 seqs
prokMSA_id:43667 AF424775 62-2 
prokMSA_id:56717 AY082455 crenarchaeote clone 44a-A1-4 
1.2.1.3.5813 OTU 1 seq
prokMSA_id:43314 AF325181 clone A1 
1.2.1.4 PYB.ISLANDICUM_SUBGROUP 10 seqs
1.2.1.4.13378 OTU 1 seq
prokMSA_id:23289 AB063645 Vulcanisaeta souniana strain:IC-059
1.2.1.4.21552 OTU 1 seq
prokMSA_id:872 M35966 Thermoproteus tenax
1.2.1.4.21555 OTU 1 seq
prokMSA_id:877 AB005296 Thermocladium modestius str. IC-125 JCM 10088
1.2.1.4.31582 OTU 7 seqs
prokMSA_id:868 L07511 Pyrobaculum islandicum str. geo3
prokMSA_id:870 X81886 Pyrobaculum neutrophilum str. NZ1
prokMSA_id:873 AB009618 Thermoproteus neutrophilus JCM 9278
prokMSA_id:26139 AF176346 crenarchaeote pBA2 
prokMSA_id:44220 AB029339 Pyrobaculum oguniense 
prokMSA_id:52477 AJ277125 Pyrobaculum sp. WIJ3 
prokMSA_id:78804 AB078332 Pyrobaculum calidifontis complete 
1.2.1.5 PYRODICTIALES 27 seqs
1.2.1.5.1 PYR.OCCULTUM_SUBGROUP 7 seqs
1.2.1.5.1.21557 OTU 1 seq
prokMSA_id:879 M21087 Pyrodictium occultum str. PL-19 DSM 2709
1.2.1.5.1.21573 OTU 1 seq
prokMSA_id:880 U63345 clone pSL123
1.2.1.5.1.21577 OTU 1 seq
prokMSA_id:888 AB019732 clone pISA9
1.2.1.5.1.28613 OTU 4 seqs
prokMSA_id:884 AB007304 clone pOWA19
prokMSA_id:885 AB007305 clone pOWA54
prokMSA_id:886 AB007306 clone pUWA43
prokMSA_id:70637 AF419639 C1_R025 
1.2.1.5.2 AP.PERNIX_SUBGROUP 7 seqs
1.2.1.5.2.21587 OTU 1 seq
prokMSA_id:894 D83259 Aeropyrum pernix str. K1
1.2.1.5.2.42546 OTU 6 seqs
prokMSA_id:909 AB008745 Aeropyrum pernix str. K1
prokMSA_id:911 AB007312 clone pOWA114
prokMSA_id:913 AB019552 Aeropyrum pernix genes ITS 23S and complete strain:OH2
prokMSA_id:53481 AB078016 Aeropyrum pernix genes 23S and ITS region complete strain:OH
prokMSA_id:54532 AB078015 Aeropyrum pernix genes 23S and ITS region complete strain:OH
prokMSA_id:73985 D83259 Aeropyrum pernix 
1.2.1.5.3 STH.MARINUS_SUBGROUP 7 seqs
1.2.1.5.3.10225 OTU 1 seq
prokMSA_id:66762 AJ318042 Ignicoccus sp. Kin4-I strain Kin4-I
1.2.1.5.3.139 OTU 1 seq
prokMSA_id:917 AF119137 unnamed organism
1.2.1.5.3.140 OTU 1 seq
prokMSA_id:919 U63340 clone pSL22
1.2.1.5.3.33271 OTU 2 seqs
prokMSA_id:921 X99562 Igneococcus islandicus str. Ko18
prokMSA_id:16514 AJ271794 Ignicoccus pacificus strain LPC33
1.2.1.5.3.33402 OTU 2 seqs
prokMSA_id:916 X99560 Staphylothermus marinus str. F1 DSM 3639
prokMSA_id:920 AJ012645 Staphylothermus achaiicus str. P8BK20S6-10-b1
1.2.1.5.4 DCO.MOBILIS_SUBGROUP 6 seqs
1.2.1.5.4.31159 OTU 3 seqs
prokMSA_id:929 X06188 Desulfurococcus mobilis DSM 2161
prokMSA_id:930 M36474 Desulfurococcus mobilis
prokMSA_id:936 X98064 Sulfophobococcus zilligii str. K1 DSM 11193
1.2.1.5.4.4215 OTU 1 seq
prokMSA_id:50397 AF325183 clone A9 
1.2.1.5.4.42567 OTU 2 seqs
prokMSA_id:932 X99561 unnamed organism
prokMSA_id:23984 AF411230 Desulfurococcus sp. SEA 
1.2.1.6 SULFOLOBUS_SUBGROUP_I 12 seqs
1.2.1.6.1 SUL.SOLFATARICUS_SUBGROUP 9 seqs
1.2.1.6.1.26285 OTU 9 seqs
prokMSA_id:938 X90483 Sulfolobus solfataricus str. Ron 12/III
prokMSA_id:940 M32504 Sulfolobus shibatae str. B12 DSM 5389
prokMSA_id:941 X90478 Sulfolobus solfataricus str. P1 DSM 1616
prokMSA_id:69935 AF425660 Sulfolobus sp. NGB23/00 
prokMSA_id:70345 AF425656 Sulfolobus sp. FF5/00 
prokMSA_id:71769 AF425657 Sulfolobus sp. MV2/99 
prokMSA_id:73229 AF425653 Sulfolobus sp. RC6/00 
prokMSA_id:74206 AF425654 Sulfolobus sp. NGB6/00 
prokMSA_id:74215 AF425652 Sulfolobus sp. AMP12/99 
1.2.1.6.2 SUL.METALLICUS_SUBGROUP 3 seqs
1.2.1.6.2.31203 OTU 3 seqs
prokMSA_id:945 U40813 Sulfolobus sp. str. LM
prokMSA_id:946 X90479 Sulfolobus metallicus DSM 6482
prokMSA_id:947 D85519 Sulfolobus metallicus DSM 6482
1.2.1.7 SULFOLOBUS_SUBGROUP_II 17 seqs
1.2.1.7.1 SUL.ACIDOCALDARIUS_SUBGROUP 6 seqs
1.2.1.7.1.33223 OTU 6 seqs
prokMSA_id:950 X90485 Sulfolobus "thuringiensis" str. Ron 12/I
prokMSA_id:951 D14876 Sulfolobus acidocaldarius str. 98-3 ATCC 33909
prokMSA_id:952 U05018 Sulfolobus acidocaldarius
prokMSA_id:953 X03235 Sulfolobus solfataricus str. P1 DSM 1616
prokMSA_id:18034 AF425662 Sulfolobus sp. MVSoil6/SC1 
prokMSA_id:71832 AF425661 Sulfolobus sp. MVSoil3/SC2 
1.2.1.7.2 SL.AZORICUS_SUBGROUP 3 seqs
1.2.1.7.2.31208 OTU 3 seqs
prokMSA_id:954 U38360 Sulfolobus sp. str. B6/2
prokMSA_id:955 D85520 Stygiolobus azoricus str. FC6 DSM 6296
prokMSA_id:956 X90480 Stygiolobus azoricus str. FC6 DSM 6296
1.2.1.7.3 SFR.OHWAKUENSIS_SUBGROUP 8 seqs
1.2.1.7.3.260 OTU 1 seq
prokMSA_id:963 AF169011 clone MS1
1.2.1.7.3.29003 OTU 4 seqs
prokMSA_id:958 D85507 Sulfurisphaera ohwakuensis str. TA-1 IFO 15161
prokMSA_id:964 AB010957 Sulfolobus yangmingensis str. YM
prokMSA_id:46167 NC_003106 Sulfolobus tokodaii complete genome
prokMSA_id:54912 AB022438 Sulfolobus sp. and 23S complete and 
1.2.1.7.3.31911 OTU 3 seqs
prokMSA_id:29928 AF391995 thermal soil clone YNPFFA30 
prokMSA_id:30893 AF391996 thermal soil clone YNPFFA52 
prokMSA_id:35548 AF391994 thermal soil clone YNPFFA2 
1.2.1.8 ACIDIANUS_SUBGROUP 10 seqs
1.2.1.8.2 ADI.BRIERLEYI_SUBGROUP 4 seqs
1.2.1.8.2.29625 OTU 4 seqs
prokMSA_id:973 U38359 Acidianus brierleyi
prokMSA_id:974 X90477 Acidianus brierleyi DSM 1651
prokMSA_id:975 D26489 Acidianus brierleyi IFO 15269
prokMSA_id:19329 AF226987 Acidianus tengchongensis 
1.2.1.8.3 MTS.SEDULA_SUBGROUP 6 seqs
1.2.1.8.3.31083 OTU 6 seqs
prokMSA_id:977 U38361 Metallosphaera sedula
prokMSA_id:978 D26491 Metallosphaera sedula IFO 15509
prokMSA_id:979 X90481 Metallosphaera sedula DSM 5348
prokMSA_id:980 X90482 Metallosphaera prunae str. Ron 12/II DSM 10039
prokMSA_id:981 AF167083 Metallosphaera J1 str. J1
prokMSA_id:41957 D85508 Metallosphaera sp. complete cds
1.2.2 NON-THERMOPHILIC_CRENARCHAEOTA 87 seqs
1.2.2.1 MARINE_CRENARCHAEOTA 85 seqs
1.2.2.1.4 ENVIRONMENTAL_CLONE_4B7_SUBGROUP 85 seqs
1.2.2.1.4.10722 OTU 1 seq
prokMSA_id:75293 AJ535118 crenarchaeote clone Gitt-GR-27
1.2.2.1.4.13823 OTU 1 seq
prokMSA_id:31165 AB050238 SAGMA-8 
1.2.2.1.4.14659 OTU 1 seq
prokMSA_id:16284 AF419642 C1_R043 
1.2.2.1.4.15238 OTU 1 seq
prokMSA_id:39230 AF361211 crenarchaeote clone SUBT-14 
1.2.2.1.4.2646 OTU 1 seq
prokMSA_id:1006 U63343 clone pSL12
1.2.2.1.4.2665 OTU 1 seq
prokMSA_id:1010 AF068822 VC2.1 Arc31 complete 
1.2.2.1.4.2679 OTU 1 seq
prokMSA_id:1019 AB019720 clone pMC2A36
1.2.2.1.4.2693 OTU 1 seq
prokMSA_id:1029 U51469 Cenarchaeum symbiosum
1.2.2.1.4.2741 OTU 1 seq
prokMSA_id:1050 AF119126 unnamed organism
1.2.2.1.4.30447 OTU 2 seqs
prokMSA_id:18486 AB050208 SAGMA-D 
prokMSA_id:30678 AB050229 SAGMA-X 
1.2.2.1.4.32436 OTU 2 seqs
prokMSA_id:46479 AB050241 SAGMA-11 
prokMSA_id:49412 AB050240 SAGMA-10 
1.2.2.1.4.32991 OTU 3 seqs
prokMSA_id:19543 AF420236 Crenarchaeote symbiont of Axinella damicornis 
prokMSA_id:31020 AF421159 Crenarchaeote symbiont of Axinella sp
prokMSA_id:36985 AF420237 Crenarchaeote symbiont of Axinella verrucosa 
1.2.2.1.4.3357 OTU 1 seq
prokMSA_id:1127 U71110 clone PM8
1.2.2.1.4.3359 OTU 1 seq
prokMSA_id:1128 U71111 clone PM23
1.2.2.1.4.3412 OTU 1 seq
prokMSA_id:1148 U62820 clone SCA11
1.2.2.1.4.35221 OTU 16 seqs
prokMSA_id:1139 U62811 clone SCA1145
prokMSA_id:1141 U62813 clone SCA1151
prokMSA_id:1144 U62816 clone SCA1166
prokMSA_id:1146 U62818 clone SCA1173
prokMSA_id:1147 U62819 clone SCA1175
prokMSA_id:24479 AF227644 crenarchaeote TRC23-38 
prokMSA_id:25116 AB050233 SAGMA-2 
prokMSA_id:32035 AB050221 SAGMA-P 
prokMSA_id:32329 AF227642 crenarchaeote TRC23-30 
prokMSA_id:39571 AF227643 crenarchaeote TRC23-31 
prokMSA_id:43271 AF227641 crenarchaeote TRC23-28 
prokMSA_id:47778 AB050228 SAGMA-W 
prokMSA_id:71074 AJ496176 crenarchaeote 34 kb genomic fragment
prokMSA_id:75056 AJ535120 crenarchaeote clone Gitt-GR-39
prokMSA_id:76092 AJ535123 crenarchaeote clone Gitt-GR-78
prokMSA_id:76611 AJ535119 crenarchaeote clone Gitt-GR-31
1.2.2.1.4.38714 OTU 2 seqs
prokMSA_id:69323 AF083071 Cenarchaeum symbiosum strain A hypothetical protein 01 compl
prokMSA_id:69639 AF083072 Cenarchaeum symbiosum strain B histone H1 binding protein hc
1.2.2.1.4.40566 OTU 14 seqs
prokMSA_id:1111 U59968 clone pGrfA4
prokMSA_id:1140 U62812 clone SCA1150
prokMSA_id:1142 U62814 clone SCA1154
prokMSA_id:1143 U62815 clone SCA1158
prokMSA_id:1145 U62817 clone SCA1170
prokMSA_id:26266 AF227637 crenarchaeote TRC132-7 
prokMSA_id:30247 AF227638 crenarchaeote TRC132-8 
prokMSA_id:41594 AF227640 crenarchaeote TRC23-10 
prokMSA_id:45484 AF227635 crenarchaeote TRC132-3 
prokMSA_id:46609 AF227639 crenarchaeote TRC132-9 
prokMSA_id:51909 AF227636 crenarchaeote TRC132-6 
prokMSA_id:74966 AJ535117 crenarchaeote clone Gitt-GR-5
prokMSA_id:75314 AJ535122 crenarchaeote clone Gitt-GR-74
prokMSA_id:76642 AJ535121 crenarchaeote clone Gitt-GR-47
1.2.2.1.4.42333 OTU 32 seqs
prokMSA_id:1005 U39635 clone 4B7
prokMSA_id:1051 AF119127 unnamed organism
prokMSA_id:1055 AF119136 unnamed organism
prokMSA_id:1056 AF119138 unnamed organism
prokMSA_id:1093 U78199 clone SB95-57
prokMSA_id:1099 AB019723 clone pMC2A1
prokMSA_id:1100 AB019724 clone pMC1A11
prokMSA_id:1101 AB019725 clone pMC1A103
prokMSA_id:1102 AB019726 clone pIVWA108
prokMSA_id:1105 AB019729 clone pIVWA11
prokMSA_id:1106 AB019730 clone pIVWA2
prokMSA_id:1107 AB019731 clone pIVWA3
prokMSA_id:1126 U71109 clone PM7
prokMSA_id:1129 U71112 clone C6
prokMSA_id:1130 U71113 clone C11
prokMSA_id:1131 U71114 clone C20
prokMSA_id:1132 U71115 clone C33
prokMSA_id:1133 U71116 clone C35
prokMSA_id:1134 U71117 clone C46
prokMSA_id:1135 U71118 clone C48
prokMSA_id:26361 AF393307 crenarchaeote 83A10 ; and glutamate semialdehyde aminotransf
prokMSA_id:28779 AJ347775 marine archaeal group 1 crenarchaeote clone ST-12K13A
prokMSA_id:28911 AJ347774 marine archaeal group 1 crenarchaeote clone ST-3K4A
prokMSA_id:33041 AF393305 crenarchaeote 19H08 
prokMSA_id:34469 AJ347777 marine archaeal group 1 crenarchaeote clone ST-12K2A
prokMSA_id:38520 AF393304 crenarchaeote 15G10 ; and glutamate semialdehyde aminotransf
prokMSA_id:39914 AB050232 SAGMA-1 
prokMSA_id:46043 U40238 crenarchaeote 4B7 40 kb genomic fragment
prokMSA_id:50335 AF393306 crenarchaeote 31B02 ; and glutamate semialdehyde aminotransf
prokMSA_id:70288 AF419646 CS_R008 
prokMSA_id:70553 AF393466 crenarchaeote 74A4 genomic 
prokMSA_id:73495 AF419636 C1_R010 
1.2.2.1.4.6651 OTU 1 seq
prokMSA_id:73503 AF389433 clone SRS62DAR03 
1.2.2.1.4.7509 OTU 1 seq
prokMSA_id:50748 AB050205 SAGMA-A 
1.2.2.2 ENVIRONMENTAL_CLONE_PJP89 2 seqs
1.2.2.2.18892 OTU 1 seq
prokMSA_id:63276 AF523942 clone ARCP1-35 
1.2.2.2.3480 OTU 1 seq
prokMSA_id:1171 L25305 Mud Volcano area of Yellowstone NP "Black Pool" hot spring 
1.2.3 ENVIRONMENTAL_CLONE_PJP27_SUBGROUP 4 seqs
1.2.3.30807 OTU 2 seqs
prokMSA_id:1173 L25303 Mud Volcano area of Yellowstone NP "Black Pool" hot spring 
prokMSA_id:49873 AF255604 Korarchaeota SRI-306 
1.2.3.30806 OTU 2 seqs
prokMSA_id:1172 L25852 Mud Volcano area of Yellowstone NP "Black Pool" hot spring 
prokMSA_id:51224 AF176347 korarchaeote pBA5 
2 BACTERIA 20144 seqs
2.1 THERMOPHILIC_OXYGEN_REDUCERS 71 seqs
2.1.10894 OTU 1 seq
prokMSA_id:67472 AB073128 Aquificales clone:YE3152
2.1.12494 OTU 1 seq
prokMSA_id:30394 AF188332 Persephonella marina 
2.1.20336 OTU 1 seq
prokMSA_id:63452 AF385630 Persephonella guaymasensis 
2.1.20386 OTU 1 seq
prokMSA_id:32720 AF402979 Aquificales clone 
2.1.20628 OTU 1 seq
prokMSA_id:79191 AJ431258 Coprothermobacter sp. Dex80-3 strain Dex80-3
2.1.30811 OTU 3 seqs
prokMSA_id:1176 D16296 Hydrogenobacter acidophilus str. 3H-1
prokMSA_id:26906 AF325179 clone B5 
prokMSA_id:43828 AJ320225 Hydrogenobaculum sp. NOR3L3B strain NOR3L3B
2.1.30883 OTU 6 seqs
prokMSA_id:1189 AF068782 VC2.1 bac39 complete 
prokMSA_id:1194 AF068791 VC2.1 Bac10 complete 
prokMSA_id:1195 AF068792 VC2.1 Bac11 complete 
prokMSA_id:1196 AF068801 VC2.1 Bac27 complete 
prokMSA_id:1197 AF068802 VC2.1 Bac28 complete 
prokMSA_id:1198 AF068807 VC2.1 Bac33 complete 
2.1.32082 OTU 8 seqs
prokMSA_id:1187 M83548 Aquifex pyrophilus str. Kol5a
prokMSA_id:30117 AF393377 Aquificales str. CIR3017HO90 
prokMSA_id:32822 AJ320223 Aquifex sp. Gri14L3B strain Gri14L3B
prokMSA_id:38306 AE000751 Aquifex aeolicus section 83 of 109 of the complete genome
prokMSA_id:39217 AJ309733 Aquifex aeolicus 
prokMSA_id:51070 NC_000918 Aquifex aeolicus complete genome
prokMSA_id:51605 AE000709 Aquifex aeolicus section 41 of 109 of the complete genome
prokMSA_id:53595 AE000657 Aquifex aeolicus complete genome
2.1.34614 OTU 23 seqs
prokMSA_id:1177 AF027098 clone OPB13
prokMSA_id:1182 AF018186 clone env.OPS 1
prokMSA_id:1183 AF018189 clone env.OPS 4
prokMSA_id:1184 AF018192 clone env.OPS 7
prokMSA_id:1186 AF018196 clone env.OPS 14
prokMSA_id:1188 AB005736 clone GANI 4
prokMSA_id:1191 AB005737 clone NAK 9
prokMSA_id:1192 AB005738 clone NAK 14
prokMSA_id:17781 AF445734 Aquificales clone SM2G01 
prokMSA_id:25727 AF445739 Aquificales clone SM2G07 
prokMSA_id:27456 AF445736 Aquificales clone SM2G04 
prokMSA_id:34570 AB071324 Aquificales str. HGM-K1 
prokMSA_id:38487 AF445658 Aquificales clone SM1B11 
prokMSA_id:39523 AF255597 Aquificales str. SRI-240 
prokMSA_id:42953 AF113542 Aquificales pBB 
prokMSA_id:49376 AF445697 Aquificales clone SM1G03 
prokMSA_id:56574 AB073130 Aquificales clone:YUM915
prokMSA_id:60550 AF507961 Aquificales YNP-SS1 
prokMSA_id:64268 AF453506 Aquificales clone pKB 
prokMSA_id:67474 AB073126 Aquificales clone:YE2921
prokMSA_id:67475 AB073123 Aquificales clone:YE111
prokMSA_id:67476 AB073124 Aquificales clone:YE12
prokMSA_id:70820 AB071325 Aquificales str. HGM-K3 
2.1.35287 OTU 18 seqs
prokMSA_id:1210 AB026268 Hydrogenobacter subterranea str. HGP1
prokMSA_id:1211 U05661 str. EM 17
prokMSA_id:16683 AJ320214 Hydrogenobacter sp. MV4L2B strain MV4L2B
prokMSA_id:18011 AJ320215 Hydrogenobacter sp. PA14 strain PA16
prokMSA_id:21804 AJ320219 Thermocrinis sp. P2L2B strain P2L2B
prokMSA_id:22567 AJ278895 Thermocrinis albus strain HI 11/12
prokMSA_id:23410 AF361217 Thermocrinis sp. clone SUBT-1 
prokMSA_id:33986 AJ320216 Hydrogenobacter sp. BB4L1B strain BB4L1B
prokMSA_id:36754 AJ320220 Thermocrinis sp. UZ23L3A strain UZ23L3A
prokMSA_id:38815 AF255599 Aquificales str. SRI-48 
prokMSA_id:39236 AY007593 Hydrogenobacter sp. IT-7242 
prokMSA_id:51871 AF301907 Aquificales pIce1 
prokMSA_id:52320 AJ320221 Thermocrinis sp. G3L1B strain G3L1B
prokMSA_id:60606 AF407692 clone R57 
prokMSA_id:60621 AF407675 clone Y04 
prokMSA_id:60624 AF407673 clone Sed01 
prokMSA_id:67859 AY082371 Bacillus sp. clone DGG36 
prokMSA_id:70459 AF453505 Aquificales clone pKA 
2.1.40866 OTU 3 seqs
prokMSA_id:1190 AB005735 clone GANI 3
prokMSA_id:67477 AB073127 Aquificales clone:YE31422
prokMSA_id:72765 AF453509 Aquificales clone pTthxG5 
2.1.41610 OTU 4 seqs
prokMSA_id:31233 AJ320218 Hydrogenobacter sp. GV8L3A strain GV8L3A
prokMSA_id:35025 AJ320213 Hydrogenobacter sp. PZ2AL1B strain PZ2AL1B
prokMSA_id:38669 AJ320222 Thermocrinis sp. H7L1B strain H7L1B
prokMSA_id:46163 AJ320217 Hydrogenobacter sp. UZ27L2A strain UZ27L2A
2.1.4221 OTU 1 seq
prokMSA_id:1215 AF018191 clone env.OPS 6
2.2 THERMOTOGALES 37 seqs
2.2.1 PETROTOGA_GROUP 4 seqs
2.2.1.34449 OTU 4 seqs
prokMSA_id:1216 Y15479 Petrotoga mobilis str. SJ95 DSM 10674
prokMSA_id:17828 AJ311702 Petrotoga siberica strain SL25T
prokMSA_id:51557 AJ311703 Petrotoga olearia strain SL24T
prokMSA_id:69492 AY125964 Petrotoga mexicana 
2.2.2 GEOTOGA_GROUP 7 seqs
2.2.2.153 OTU 1 seq
prokMSA_id:79381 AJ431249 Thermotogales str. Dex60-32 strain Dex60-32
2.2.2.30448 OTU 2 seqs
prokMSA_id:18489 AF326121 Thermotogales str. KA3 
prokMSA_id:74095 AJ300502 Thermotogales sp. AM1110 isolate AM1110
2.2.2.32015 OTU 2 seqs
prokMSA_id:1218 L10658 Geotoga petraea str. T5 ATCC 51226
prokMSA_id:1219 L10659 Geotoga subterranea str. CC-1 ATCC 51225
2.2.2.4255 OTU 1 seq
prokMSA_id:1220 AJ250439 str. MV1075
2.2.2.6100 OTU 1 seq
prokMSA_id:66261 AF509468 Geotoga aestuarianus strain T3B 
2.2.3 FERVIDOBACTERIUM_GROUP 5 seqs
2.2.3.18666 OTU 1 seq
prokMSA_id:71035 AY151268 Fervidobacterium sp. YNP 
2.2.3.32716 OTU 2 seqs
prokMSA_id:18702 AF434670 Fervidobacterium islandicum strain AW-1 
prokMSA_id:32030 AF255593 Thermotogales sp. SRI-251 
2.2.3.4256 OTU 1 seq
prokMSA_id:1223 AJ237665 Caldotoga fontana str. B4
2.2.3.4263 OTU 1 seq
prokMSA_id:1227 Z49117 Fervidobacterium gondwanense str. AB39 ACM 5017
2.2.4 THERMOSIPHO_GROUP 6 seqs
2.2.4.1719 OTU 1 seq
prokMSA_id:79590 AJ431248 Thermotogales str. BHI80-139 strain BHI80-139
2.2.4.30464 OTU 4 seqs
prokMSA_id:1231 AB024932 Thermosipho IHB1 str. IHB1
prokMSA_id:40837 AJ272022 Thermosipho sp. DSM 13256 
prokMSA_id:42520 AF231727 Thermosipho sp. TBA5 
prokMSA_id:50206 AJ272023 Thermosipho sp. DSM 6568 strain DSM 6568 RI19.B2
2.2.4.4285 OTU 1 seq
prokMSA_id:1230 Z70248 Thermosipho melanesiensis str. BI429 CIP 104789
2.2.5 THERMOTOGA_GROUP 5 seqs
2.2.5.17212 OTU 1 seq
prokMSA_id:38910 AB039769 Thermotoga thermarum 
2.2.5.33030 OTU 3 seqs
prokMSA_id:1233 U22664 Thermotoga subterranea str. SL1 DSM 9912
prokMSA_id:1234 X80790 Thermotoga elfii str. SERB 6459 DSM 9442
prokMSA_id:62474 AF355615 Thermotoga sp. TMO complete 
2.2.5.4290 OTU 1 seq
prokMSA_id:1235 U89768 Thermotoga hypogea SEBR 7054
2.2.6 TT.MARITIMA_GROUP 7 seqs
2.2.6.31550 OTU 6 seqs
prokMSA_id:24284 AJ401021 Thermotoga maritima strain FJSS3-B.1
prokMSA_id:32773 AJ401020 Thermotoga neapolitana strain LA10
prokMSA_id:41353 AB039768 Thermotoga neapolitana 
prokMSA_id:46327 AB027017 Thermotoga sp. RKU-10 isolate:RKU-10
prokMSA_id:48407 AB027016 Thermotoga sp. RKU-1 
prokMSA_id:70547 AJ401024 Thermotoga neapolitana strain LA4
2.2.6.4311 OTU 1 seq
prokMSA_id:1240 AF027045 clone OPB14
2.2.7 ENVIRONMENTAL_CLONE_OPB7_GROUP 3 seqs
2.2.7.32029 OTU 2 seqs
prokMSA_id:1243 AF027071 clone OPB7
prokMSA_id:35305 AF255594 Thermotogales sp. SRI-15 
2.2.7.4313 OTU 1 seq
prokMSA_id:1241 U05660 str. EM 3
2.3 CTM.PROTEOLYTICUS_GROUP 2 seqs
2.3.4332 OTU 1 seq
prokMSA_id:1249 Y08935 Coprothermobacter platensis str. 3R DSM 11748
2.3.4354 OTU 1 seq
prokMSA_id:1250 X69335 Coprothermobacter proteolyticus str. BT ATCC 35245
2.4 STRAIN.EM_19 2 seqs
2.4.30986 OTU 2 seqs
prokMSA_id:1251 U05662 str. EM 19
prokMSA_id:16693 AF352537 clone BH81 complete 
2.5 ENVIRONMENTAL_CLONE_OPB45_GROUP 12 seqs
2.5.12725 OTU 1 seq
prokMSA_id:52699 AF393376 Thermodesulfobacterium sp. CIR29812 
2.5.27951 OTU 3 seqs
prokMSA_id:1259 X96725 Thermodesulfobacterium hveragerdicum str. JSP
prokMSA_id:38674 AF418169 Thermodesulfobacterium commune DSM 2178 
prokMSA_id:70598 AF334601 Thermodesulfobacterium thermophilum strain DSM 1276 
2.5.322 OTU 1 seq
prokMSA_id:42031 AF332514 Thermodesulfobacterium hydrogeniphilum 
2.5.34483 OTU 6 seqs
prokMSA_id:1252 AF027096 clone OPB45
prokMSA_id:27454 AF411013 Geothermobacterium ferrireducens strain FW-1a 
prokMSA_id:39066 AF255596 Thermodesulfotobacterium sp. SRI-93 
prokMSA_id:43680 AF352533 Thermodesulfobacterium sp. clone BSpN50 complete 
prokMSA_id:67861 AY082369 Thermodesulfobacteriaceae clone DGG19 
prokMSA_id:72666 AF255595 Thermodesulfotobacterium sp. SRI-27 
2.5.4391 OTU 1 seq
prokMSA_id:1260 AJ001049 Desulfurobacterium thermolithotrophum str. BSA
2.7 GREEN_NON-SULFUR_BACTERIA_AND_RELATIVES 172 seqs
2.7.1 CHLOROFLEXUS_SUBDIVISION 47 seqs
2.7.1.1 CHLOROFLEXUS_ASSEMBLAGE 15 seqs
2.7.1.1.1391 OTU 1 seq
prokMSA_id:34391 AY063760 Eikelboom 1851 Ben52 
2.7.1.1.14325 OTU 1 seq
prokMSA_id:38489 AB079645 Green non-sulfur B1-5 
2.7.1.1.19468 OTU 1 seq
prokMSA_id:70526 X84565 clone SBR2022
2.7.1.1.2881 OTU 1 seq
prokMSA_id:72494 AJ308499 Chloroflexus aggregans strain DSM 9486
2.7.1.1.32936 OTU 4 seqs
prokMSA_id:56710 AF407685 clone R08 
prokMSA_id:60577 AF407724 clone B55 
prokMSA_id:60594 AF407705 clone G32 
prokMSA_id:71275 AJ308501 Chloroflexus aurantiacus strain DSM 637
2.7.1.1.3474 OTU 1 seq
prokMSA_id:28036 AJ308497 Halotolerant P4-I-0 strain P4-I-0 clone A
2.7.1.1.4406 OTU 1 seq
prokMSA_id:1266 AF039293 Herpetosiphon geysericola ATCC 23076
2.7.1.1.4465 OTU 1 seq
prokMSA_id:1282 M34115 Thermomicrobium roseum ATCC 27502
2.7.1.1.6126 OTU 1 seq
prokMSA_id:72831 AJ308498 Chloroflexus sp. 396-1 strain 396-1
2.7.1.1.6331 OTU 1 seq
prokMSA_id:65689 AF507694 soil clone S095 
2.7.1.1.8760 OTU 1 seq
prokMSA_id:28650 AF418964 clone HTH4 
2.7.1.1.9378 OTU 1 seq
prokMSA_id:20892 AJ420142 Sphaerobacter thermophilus strain DSM 20745T
2.7.1.2 ENVIRONMENTAL_CLONE_T78_GROUP 30 seqs
2.7.1.2.15225 OTU 1 seq
prokMSA_id:22922 AJ249103 SHA-21 
2.7.1.2.17983 OTU 1 seq
prokMSA_id:69766 AJ306745 clone SHA-31
2.7.1.2.18217 OTU 1 seq
prokMSA_id:62551 AJ504591 isolate P2CN44
2.7.1.2.29130 OTU 2 seqs
prokMSA_id:1287 AJ009453 clone SJA-15
prokMSA_id:52017 AJ249106 SHA-3 
2.7.1.2.30451 OTU 3 seqs
prokMSA_id:1299 Z94009 clone T78
prokMSA_id:1300 AF050570 clone WCHB1-57
prokMSA_id:48579 AF423184 Toluene-degrading methanogenic consortium Eub 4 
2.7.1.2.31071 OTU 2 seqs
prokMSA_id:1295 AF154100 clone GCA112
prokMSA_id:1296 AF154104 clone GCA004
2.7.1.2.32083 OTU 2 seqs
prokMSA_id:23428 AF234690 sludge H39 
prokMSA_id:36737 AF234734 sludge S41 
2.7.1.2.32361 OTU 5 seqs
prokMSA_id:1285 AF027036 clone OPB65
prokMSA_id:1297 AF018195 clone env.OPS 12
prokMSA_id:18359 AF445735 green nonsulfur clone SM2G02 
prokMSA_id:52019 AF445746 green nonsulfur clone SM2H10 
prokMSA_id:74684 AF445659 green nonsulfur clone SM1B12 
2.7.1.2.33958 OTU 7 seqs
prokMSA_id:22845 AF234759 sludge S16 
prokMSA_id:70551 AF423290 soil clone 746-2 
prokMSA_id:71187 AF423285 soil clone 666-2 
prokMSA_id:71675 X84472 clone SBR1029
prokMSA_id:72088 AF423278 soil clone 572-2 
prokMSA_id:72308 AF423295 soil clone 838-2 
prokMSA_id:73823 X84498 clone SBR1064
2.7.1.2.4512 OTU 1 seq
prokMSA_id:1298 AB015556 str. BD3-16
2.7.1.2.4554 OTU 1 seq
prokMSA_id:65481 AJ278167 SHD-71 
2.7.1.2.4553 OTU 1 seq
prokMSA_id:65480 AJ278168 SHD-58 
2.7.1.2.4556 OTU 1 seq
prokMSA_id:65482 AJ278166 SHD-197 
2.7.1.2.5702 OTU 1 seq
prokMSA_id:51154 AF316759 Crater Lake CL500-11 
2.7.1.2.6221 OTU 1 seq
prokMSA_id:72863 AJ441227 green non-sulfur clone P. palm C 37
2.7.1.3 ENVIRONMENTAL_CLONE_OPB92_GROUP 2 seqs
2.7.1.3.31066 OTU 2 seqs
prokMSA_id:1310 AF027030 clone OPB92
prokMSA_id:28223 AF445687 candidate division OP11 clone SM1E10 
2.7.2 DEINOCOCCUS-THERMUS_SUBDIVISION 125 seqs
2.7.2.1 THERMUS_GROUP 105 seqs
2.7.2.1.1 T.THERMOPHILUS_SUBGROUP 75 seqs
2.7.2.1.1.29832 OTU 3 seqs
prokMSA_id:45920 Y18416 Thermus oshimai strain SPS-17T
prokMSA_id:46453 AB054646 Thermus sp. T2 
prokMSA_id:60595 AF407704 clone G24 
2.7.2.1.1.40051 OTU 10 seqs
prokMSA_id:1316 L09659 Thermus thermophilus str. HB27
prokMSA_id:1326 X07998 Thermus thermophilus str. HB-8 ATCC 27634
prokMSA_id:1344 L09660 Thermus flavus str. AT-62
prokMSA_id:1349 M26923 Thermus thermophilus str. HB-8
prokMSA_id:1350 AF005751 Thermus H21.73.f
prokMSA_id:35173 AJ251938 Thermus thermophilus strain CS
prokMSA_id:37306 AJ251939 Thermus thermophilus strain X6
prokMSA_id:40690 AJ251940 Thermus thermophilus strain CT1
prokMSA_id:72262 AF005751 H21.73.f 
prokMSA_id:75730 AX557347 45 from Patent WO0246392
2.7.2.1.1.41491 OTU 58 seqs
prokMSA_id:1317 L10070 Thermus sp. str. YSPID A.1
prokMSA_id:1318 AF027019 clone OPB19
prokMSA_id:1319 AF027020 clone OPB31
prokMSA_id:1320 AF027021 clone OPB32
prokMSA_id:1324 AF018197 clone env.OPS 15
prokMSA_id:1333 AF032127 Thermus scotoductus str. SE-1 DSM 8553
prokMSA_id:1334 L09661 Thermus sp. str. NMX2 A.1
prokMSA_id:1335 AF020205 Thermus SA-01 str. SA-01
prokMSA_id:1345 L09663 Thermus aquaticus str. YT-1
prokMSA_id:1356 L37520 Thermus sp. str. ac-1
prokMSA_id:1357 L37522 Thermus sp. str. ac-7
prokMSA_id:1358 Z15061 Thermus sp. str. ViI7
prokMSA_id:16358 AY053486 AT425_EubC9 
prokMSA_id:17962 AF255591 Thermus sp. SRI-248 
prokMSA_id:18989 Y18415 Thermus antranikianus strain HN2-7
prokMSA_id:24092 AB071811 Thermus kawarayuensis 
prokMSA_id:25836 AF255590 Thermus sp. SRI-96 
prokMSA_id:26144 Y18410 Thermus scotoductus strain ITI-252T
prokMSA_id:27993 AF324062 Thermus sp. NTU-024 
prokMSA_id:29817 AF445644 Thermus/Deinococcus group clone SM1A01 
prokMSA_id:35343 Y18412 Thermus antranikianus strain HE-5
prokMSA_id:39025 Y18411 Thermus antranikianus strain HN3-7T
prokMSA_id:41572 AF331969 Thermus rehai 
prokMSA_id:43240 Y18414 Thermus antranikianus strain HN2-3
prokMSA_id:45737 AF257219 Thermus sp. IT-7254 
prokMSA_id:47392 Y18413 Thermus antranikianus strain HN3-10
prokMSA_id:47782 Y18408 Thermus igniterrae strain GE-2
prokMSA_id:53657 AF384168 Thermus sp. HR13 
prokMSA_id:55685 AF407738 Thermus sp. G70-06 
prokMSA_id:55806 AF407737 Thermus sp. G70-05 
prokMSA_id:60555 AF407747 Thermus sp. Y55-11 
prokMSA_id:60556 AF407748 Thermus sp. Y55-12 
prokMSA_id:60558 AF407745 Thermus sp. Y55-09 
prokMSA_id:60559 AF407744 Thermus sp. Y55-08 
prokMSA_id:60560 AF407743 Thermus sp. Y55-07 
prokMSA_id:60561 AF407742 Thermus sp. B70-05 
prokMSA_id:60562 AF407741 Thermus sp. B70-04 
prokMSA_id:60563 AF407740 Thermus sp. G70-08 
prokMSA_id:60564 AF407739 Thermus sp. G70-07 
prokMSA_id:60566 AF407735 Thermus sp. R70-06 
prokMSA_id:60568 AF407733 Thermus sp. Y70-06 
prokMSA_id:60569 AF407732 Thermus sp. Y70-05 
prokMSA_id:60604 AF407694 clone R75 
prokMSA_id:60605 AF407693 clone R58 
prokMSA_id:60613 AF407683 clone Y90 
prokMSA_id:60615 AF407681 clone Y71 
prokMSA_id:60620 AF407676 clone Y10 
prokMSA_id:60622 AF407674 clone Y03 
prokMSA_id:63588 AF521188 Thermus sp. RH-1514 
prokMSA_id:63589 AF521187 Thermus sp. RH-1214 
prokMSA_id:63592 AF521186 Thermus sp. RH-914 
prokMSA_id:67864 AY082365 Thermus sp. clone DFQ34 
prokMSA_id:67865 AY082364 Thermus sp. clone DFQ28 
prokMSA_id:67866 AY082366 Thermus sp. clone DFQ37 
prokMSA_id:67868 AY082363 Thermus sp. clone DFQ6 
prokMSA_id:67904 AY028380 Thermus sp. C4 
prokMSA_id:71171 AF448817 Thermus sp. YBJ-1 
prokMSA_id:81961 AY169426 Thermus scotoductus clone 1-71 
2.7.2.1.1.42236 OTU 2 seqs
prokMSA_id:1328 L10067 Thermus sp. str. Fiji 3A.1
prokMSA_id:1337 L09670 Thermus sp. str. HS A.1
2.7.2.1.1.5717 OTU 1 seq
prokMSA_id:81243 AY169420 Thermus scotoductus clone 1-43 
2.7.2.1.1.5857 OTU 1 seq
prokMSA_id:20463 AJ430586 Marinothermus profundus strain 506T
2.7.2.1.2 T.FILIFORMIS_SUBGROUP 9 seqs
2.7.2.1.2.32731 OTU 9 seqs
prokMSA_id:1360 L09667 Thermus filiformis
prokMSA_id:1383 L10068 Thermus sp. str. W28 A.1
prokMSA_id:1384 L09666 Thermus sp. str. Tok8 A.1
prokMSA_id:1385 L09665 Thermus sp. str. Tok20 A.1
prokMSA_id:1388 L10069 Thermus sp. str. Tok3 A.1
prokMSA_id:1392 L09669 Thermus sp. str. Rt4 1A
prokMSA_id:1393 L09668 Thermus sp. str. OK6 A.1
prokMSA_id:1394 L09671 Thermus sp. str. T351
prokMSA_id:38282 AF402971 Thermus sp. clone 
2.7.2.1.3 MEI.RUBER_SUBGROUP 21 seqs
2.7.2.1.3.31409 OTU 3 seqs
prokMSA_id:1405 X84211 Meiothermus silvanus str. V1-R2 DSM 9946
prokMSA_id:1406 Y13598 Meiothermus silvanus str. GY-8
prokMSA_id:1407 Y13599 Meiothermus silvanus str. GY-10
2.7.2.1.3.33671 OTU 17 seqs
prokMSA_id:1395 L37523 Thermus sp. str. ac-17
prokMSA_id:1396 Y13594 Meiothermus cerbereus str. GY-1 DSM 11376
prokMSA_id:1397 Y13595 Meiothermus cerbereus str. GY-5
prokMSA_id:1398 L37521 Thermus sp. str. ac-2
prokMSA_id:1400 L09672 Meiothermus ruber
prokMSA_id:1401 Y13596 Meiothermus ruber str. 16105
prokMSA_id:1402 Y13597 Meiothermus ruber str. 16106
prokMSA_id:1403 Z15059 Meiothermus ruber str. Loginova 21 ATCC 35948
prokMSA_id:17405 AF312766 Meiothermus rosaceus 
prokMSA_id:20802 AF418002 Meiothermus taiwanensis strain WR-220 
prokMSA_id:26209 AF418001 Meiothermus taiwanensis strain WR-30T 
prokMSA_id:56011 AF407749 Thermus sp. R55-10 
prokMSA_id:56267 AF407703 clone G21 
prokMSA_id:60587 AF407712 clone B01 
prokMSA_id:60593 AF407706 clone G34 
prokMSA_id:60612 AF407684 clone R03 
prokMSA_id:69769 AF407750 Meiothermus sp. R55-11 
2.7.2.1.3.5961 OTU 1 seq
prokMSA_id:1404 X84212 Meiothermus chliarophilus str. ALT-8 DSM 9957
2.7.2.2 DEINOCOCCUS_GROUP 20 seqs
2.7.2.2.17498 OTU 1 seq
prokMSA_id:62482 AF513964 Deinococci clone LA7-B27N 
2.7.2.2.31213 OTU 5 seqs
prokMSA_id:1411 Y13039 Deinococcus geothermalis str. AG-5a
prokMSA_id:1412 Y13040 Deinococcus geothermalis str. RSPS-2a
prokMSA_id:1413 Y13038 Deinococcus geothermalis str. AG-3a
prokMSA_id:1420 AJ000002 Deinococcus geothermalis str. E50053
prokMSA_id:1421 Y15444 Deinococcus geothermalis str. E50053
2.7.2.2.31216 OTU 3 seqs
prokMSA_id:1414 Y13041 Deinococcus murrayi str. ALT-1b
prokMSA_id:1415 Y13043 Deinococcus murrayi str. RSPS-7a
prokMSA_id:1416 Y13042 Deinococcus murrayi str. RSG-1.2
2.7.2.2.32249 OTU 3 seqs
prokMSA_id:1417 Y11332 Deinococcus radiodurans DSM 20539
prokMSA_id:25349 AF289089 Deinococcus radiodurans DC 
prokMSA_id:55007 NC_001263 Deinococcus radiodurans chromosome 1 complete 
2.7.2.2.33611 OTU 3 seqs
prokMSA_id:1422 Y11329 Deinococcus grandis DSM 3963
prokMSA_id:1424 AB022911 Deinococcus sp. str. MBIC3950
prokMSA_id:1426 D78365 Deinococcus sp. str. S34
2.7.2.2.3917 OTU 1 seq
prokMSA_id:81042 AJ549111 Deinococcus indica strain Wt/1aT
2.7.2.2.5973 OTU 1 seq
prokMSA_id:1408 Y11331 Deinococcus proteolyticus DSM 20540
2.7.2.2.6005 OTU 1 seq
prokMSA_id:1410 Y11333 Deinococcus radiophilus DSM 20551
2.7.2.2.6026 OTU 1 seq
prokMSA_id:1418 M21413 Deinococcus radiodurans ATCC 35073
2.7.2.2.6029 OTU 1 seq
prokMSA_id:1419 Y11334 Deinococcus radiopugnans ATCC 19172
2.8 ENVIRONMENTAL_CLONE_OPB80_GROUP 21 seqs
2.8.10761 OTU 1 seq
prokMSA_id:81869 AY214187 clone ZZ12AC2 
2.8.16739 OTU 1 seq
prokMSA_id:32254 AJ292686 WD294 clone WD294
2.8.18751 OTU 1 seq
prokMSA_id:63206 AF524022 clone FW68 
2.8.18910 OTU 1 seq
prokMSA_id:63289 AF523930 clone RCP2-64 
2.8.20166 OTU 1 seq
prokMSA_id:71249 X84482 SBR1039 
2.8.21085 OTU 1 seq
prokMSA_id:41280 AF254404 UASB_TL26 complete 
2.8.31239 OTU 2 seqs
prokMSA_id:1434 AF027089 clone OPB80
prokMSA_id:1436 AF027090 clone OPB90
2.8.31240 OTU 2 seqs
prokMSA_id:57713 AF418954 clone HTD12 
prokMSA_id:57714 AF418946 clone HTB7 
2.8.41447 OTU 5 seqs
prokMSA_id:58376 AF368189 candidate division OP10 clone SBRT162 
prokMSA_id:58377 AF368187 candidate division OP10 clone SBRT161 
prokMSA_id:58378 AF368186 candidate division OP10 clone SBRT152 
prokMSA_id:66823 AF368185 candidate division OP10 clone SBRA309 
prokMSA_id:66825 AF368184 candidate division OP10 clone SBRA136 
2.8.4201 OTU 1 seq
prokMSA_id:80475 AY192276 candidate division OP10 clone W1-4H 
2.8.6071 OTU 1 seq
prokMSA_id:1429 AF027092 clone OPB50
2.8.6094 OTU 1 seq
prokMSA_id:1431 AJ009501 clone SJA-171
2.8.6093 OTU 1 seq
prokMSA_id:1430 AJ009490 clone SJA-121
2.8.6095 OTU 1 seq
prokMSA_id:1432 AJ009504 clone SJA-176
2.8.6103 OTU 1 seq
prokMSA_id:1435 AJ009456 clone SJA-22
2.9 LEPTOSPIRILLUM-NITROSPIRA 89 seqs
2.9.1 NITROSPIRA_GROUP 32 seqs
2.9.1.1 NSP.MARINA_SUBGROUP 4 seqs
2.9.1.1.12022 OTU 1 seq
prokMSA_id:75438 AJ519405 Nitrospira sp. clone JG37-AG-131
2.9.1.1.4 OTU 1 seq
prokMSA_id:70898 AJ347039 clone TK24
2.9.1.1.6125 OTU 1 seq
prokMSA_id:1443 X82559 Nitrospira marina
2.9.1.1.6134 OTU 1 seq
prokMSA_id:1449 AB015550 Cytophaga sp. str. BD3-8
2.9.1.2 NSP.MOSCOVIENSIS_SUBGROUP 28 seqs
2.9.1.2.13390 OTU 1 seq
prokMSA_id:60596 AF407702 clone G19 
2.9.1.2.34155 OTU 15 seqs
prokMSA_id:1460 Y14636 Nitrospira sp
prokMSA_id:1461 Y14637 Nitrospira sp
prokMSA_id:1462 Y14638 Nitrospira sp
prokMSA_id:1463 Y14639 Nitrospira sp
prokMSA_id:1464 Y14640 Nitrospira sp
prokMSA_id:1465 Y14641 Nitrospira sp
prokMSA_id:1466 Y14642 Nitrospira sp
prokMSA_id:1467 Y14643 Nitrospira sp
prokMSA_id:1471 AJ224038 Nitrospira sp
prokMSA_id:1473 AJ224040 Nitrospira sp
prokMSA_id:1474 AJ224041 Nitrospira sp
prokMSA_id:1480 AF033558 clone A-11
prokMSA_id:1481 AF033559 clone A-4
prokMSA_id:1493 AF155154 Nitrospira cf. moscoviensis SBR2016 str. SBR2016
prokMSA_id:19768 AF314422 PHOS-HE34 
2.9.1.2.35079 OTU 10 seqs
prokMSA_id:1456 X82558 Nitrospira moscoviensis str. M-1 DSM 10035
prokMSA_id:1468 Y14644 Nitrospira sp
prokMSA_id:1472 AJ224039 Nitrospira sp
prokMSA_id:1475 AJ224042 Nitrospira sp
prokMSA_id:1490 AF035813 Nitrospira sp
prokMSA_id:1491 AF155152 Nitrospira cf. moscoviensis SBR1015 str. SBR1015
prokMSA_id:1492 AF155153 Nitrospira cf. moscoviensis SBR1024 str. SBR1024
prokMSA_id:1494 AF155155 Nitrospira cf. moscoviensis SBR2046 str. SBR2046
prokMSA_id:38830 AF293010 Green Bay ferromanganous micronodule MNC2 
prokMSA_id:46321 AF293011 Green Bay ferromanganous micronodule MNB2 
2.9.1.2.6330 OTU 1 seq
prokMSA_id:65688 AF507695 soil clone S0126 
2.9.1.2.9594 OTU 1 seq
prokMSA_id:52208 AF234723 sludge S47 
2.9.2 STR.SBR1108 1 seq
2.9.2.16140 OTU 1 seq
prokMSA_id:32174 AF269004 SBR1108 
2.9.3 LEPTOSPIRILLUM_GROUP 38 seqs
2.9.3.1 LPP.FERROOXIDANS_SUBGROUP 28 seqs
2.9.3.1.14480 OTU 1 seq
prokMSA_id:77042 AJ519639 actinobacterium clone Sh765B-AG-45
2.9.3.1.15772 OTU 1 seq
prokMSA_id:76626 AJ532725 clone JG34-KF-252
2.9.3.1.32425 OTU 11 seqs
prokMSA_id:1509 X86776 Leptospirillum ferrooxidans
prokMSA_id:1510 AF047641 clone TRA1-10
prokMSA_id:17118 AF356834 Leptospirillum ferrooxidans strain CF12 complete 
prokMSA_id:17578 AF356837 Leptospirillum ferrooxidans strain P3a complete 
prokMSA_id:24590 AF356835 Leptospirillum ferrooxidans strain Chil-Lf2 complete 
prokMSA_id:28578 AF356832 Leptospirillum ferrooxidans strain 49879 complete 
prokMSA_id:30465 AF356838 Leptospirillum ferrooxidans strain Parys complete 
prokMSA_id:39980 AF356839 Leptospirillum ferrooxidans strain Sy complete 
prokMSA_id:40142 AF376016 Leptospirillum sp. NOen1 
prokMSA_id:41859 AF356833 Leptospirillum ferrooxidans strain BCT2 complete 
prokMSA_id:58308 AF543510 clone BA39 
2.9.3.1.32759 OTU 14 seqs
prokMSA_id:1500 M79383 Leptospirillum sp. DSM 2391
prokMSA_id:1503 X72852 Leptospirillum ferrooxidans
prokMSA_id:1507 X86773 clone cOS7
prokMSA_id:28124 AF460981 Leptospirillum sp. K01 
prokMSA_id:29535 AF356830 Leptospirillum ferriphilum strain Fairview 
prokMSA_id:34533 AJ295685 Leptospirillum ferrooxidans strain TzT-B1-K3
prokMSA_id:38108 AJ237903 Leptospirillum sp. strain DSM 2391
prokMSA_id:38542 AJ295686 Leptospirillum ferrooxidans strain TzT-B1-K4
prokMSA_id:38928 AJ237902 Leptospirillum sp. isolate LA
prokMSA_id:39717 AF356829 Leptospirillum ferriphilum strain ATCC 49881 
prokMSA_id:43208 AF460983 Leptospirillum sp. K16 
prokMSA_id:45840 AF225449 BA24 
prokMSA_id:50647 AF356831 Leptospirillum ferriphilum strain Warwick 
prokMSA_id:56048 AF513709 Leptospirillum sp. MT6 
2.9.3.1.5288 OTU 1 seq
prokMSA_id:58311 AF543502 clone AW5 
2.9.3.99 VARIOUS 10 seqs
2.9.3.99.34889 OTU 8 seqs
prokMSA_id:1511 X86774 clone cOS62
prokMSA_id:54251 AF225448 BA29 
prokMSA_id:56204 AF543509 clone BA33 
prokMSA_id:58150 AF544226 clone ASL9 
prokMSA_id:58307 AF543511 clone BA41 
prokMSA_id:58314 AF543503 clone AW11 
prokMSA_id:58317 AF543501 clone AW4 
prokMSA_id:63295 AF523924 clone RCP1-70 
2.9.3.99.41947 OTU 2 seqs
prokMSA_id:58316 AF543500 clone AW1 
prokMSA_id:63293 AF523925 clone RCP2-12 
2.9.4 TDV.YELLOWSTONII_GROUP 18 seqs
2.9.4.11448 OTU 1 seq
prokMSA_id:51852 AF286037 Saltmarsh clone LCP-6 
2.9.4.12600 OTU 1 seq
prokMSA_id:75520 AJ534688 Nitrospirae clone S15A-MN131
2.9.4.15065 OTU 1 seq
prokMSA_id:77126 AJ534687 Nitrospirae clone S15A-MN30
2.9.4.158 OTU 1 seq
prokMSA_id:79386 AB100014 sequences clone: IndB4-27
2.9.4.18779 OTU 1 seq
prokMSA_id:63218 AF524008 clone FW114 
2.9.4.18799 OTU 1 seq
prokMSA_id:63224 AF524003 clone FW118 
2.9.4.18797 OTU 1 seq
prokMSA_id:63221 AF524005 clone FW19 
2.9.4.18796 OTU 1 seq
prokMSA_id:63220 AF524006 clone FW27 
2.9.4.18798 OTU 1 seq
prokMSA_id:63223 AF524004 clone FW5 
2.9.4.2064 OTU 1 seq
prokMSA_id:34433 AY050588 clone GOUTA19 
2.9.4.32981 OTU 5 seqs
prokMSA_id:1523 X96726 Thermodesulfovibrio islandicus str. R1ha3
prokMSA_id:1531 AB021303 Thermodesulfovibrio TGL-LS1 str. TGL-LS1
prokMSA_id:1532 AB021304 Thermodesulfovibrio TSL-P1 str. TSL-P1
prokMSA_id:23948 AF402981 Nitrospira sp. clone 
prokMSA_id:27466 AF255602 Nitrospira sp. SRI-237 
2.9.4.6914 OTU 1 seq
prokMSA_id:1526 AB015536 str. BD2-6
2.9.4.6920 OTU 1 seq
prokMSA_id:1528 L22045 clone OPI-2
2.9.4.6922 OTU 1 seq
prokMSA_id:1529 AF027001 clone OPB67A
2.10 PROSTHECOBACTER_GROUP 63 seqs
2.10.1 ENVIRONMENTAL_CLONE_WCHB1-41_SUBGROUP 17 seqs
2.10.1.1404 OTU 1 seq
prokMSA_id:63828 AF454309 Verrucomicrobia clone ML1228J-2 
2.10.1.14195 OTU 1 seq
prokMSA_id:39097 AJ401121 verrucomicrobium DEV055 clone DEV055
2.10.1.14990 OTU 1 seq
prokMSA_id:37973 AJ390453 soil PBS-III-20 
2.10.1.18971 OTU 1 seq
prokMSA_id:62665 AF507896 Verrucomicrobia clone ML635J-35 
2.10.1.26778 OTU 2 seqs
prokMSA_id:1542 U81755 clone vadinHB65
prokMSA_id:31745 AF275917 AA08 
2.10.1.2814 OTU 1 seq
prokMSA_id:71809 AY114317 Verrucomicrobia clone LD1-PA26 
2.10.1.42939 OTU 2 seqs
prokMSA_id:63783 AY114323 Verrucomicrobia clone LD1-PA37 
prokMSA_id:63784 AY114322 Verrucomicrobia clone LD1-PA34 
2.10.1.6956 OTU 1 seq
prokMSA_id:1538 AF001775 clone RFP12
2.10.1.6976 OTU 1 seq
prokMSA_id:1540 AF050560 clone WCHB1-41
2.10.1.6977 OTU 1 seq
prokMSA_id:1541 U81707 clone vadinBE97
2.10.1.6984 OTU 1 seq
prokMSA_id:1547 AJ241008 clone Sva0500
2.10.1.774 OTU 1 seq
prokMSA_id:63770 AY114336 Verrucomicrobia clone LD1-PB9 
2.10.1.782 OTU 1 seq
prokMSA_id:63774 AY114333 Verrucomicrobia clone LD1-PB2 
2.10.1.783 OTU 1 seq
prokMSA_id:63776 AY114330 Verrucomicrobia clone LD1-PB12 
2.10.1.821 OTU 1 seq
prokMSA_id:63790 AY114314 Verrucomicrobia clone LD1-PA20 
2.10.2 VER.SP_STR_VEGLC2_SUBGROUP 10 seqs
2.10.2.20517 OTU 1 seq
prokMSA_id:25549 AJ289985 FukuN111 
2.10.2.32284 OTU 8 seqs
prokMSA_id:1549 X99390 Verrucomicrobium sp. str. VeGlc2
prokMSA_id:1558 X99391 str. VeCb1
prokMSA_id:1559 X99392 str. VeSm13
prokMSA_id:1561 AJ229235 str. PB90-1
prokMSA_id:1562 AJ229239 str. PB90-3
prokMSA_id:1563 AJ229246 str. ACB90
prokMSA_id:47141 AJ229213 from anoxic bulk soil clone BSV65
prokMSA_id:52931 AJ229212 from anoxic bulk soil clone BSV64
2.10.2.7003 OTU 1 seq
prokMSA_id:1556 U81738 clone vadinHA64
2.10.3 ENVIRONMENTAL_CLONE_OPB35_SUBGROUP 8 seqs
2.10.3.10791 OTU 1 seq
prokMSA_id:81873 AY211073 Verrucomicrobia clone VC12 
2.10.3.11543 OTU 1 seq
prokMSA_id:21798 AJ401114 verrucomicrobium DEV059 clone DEV059
2.10.3.13998 OTU 1 seq
prokMSA_id:52814 AJ401132 verrucomicrobium DEV114 clone DEV114
2.10.3.15645 OTU 1 seq
prokMSA_id:17035 AF234711 sludge H2 
2.10.3.17513 OTU 1 seq
prokMSA_id:31747 AJ401115 verrucomicrobium DEV008 clone DEV008
2.10.3.18814 OTU 1 seq
prokMSA_id:63232 AF523995 clone FW4 
2.10.3.18813 OTU 1 seq
prokMSA_id:63231 AF523996 clone FW49 
2.10.3.7032 OTU 1 seq
prokMSA_id:1572 AF027005 clone OPB35
2.10.4 PRSB.DEJONGEII_SUBGROUP 12 seqs
2.10.4.15289 OTU 1 seq
prokMSA_id:22941 AJ290012 FukuS27 
2.10.4.17652 OTU 1 seq
prokMSA_id:47433 AF316731 Crater Lake CL500-85 
2.10.4.30429 OTU 2 seqs
prokMSA_id:23971 AF234714 sludge A38 
prokMSA_id:35008 AF234742 sludge A21 
2.10.4.32180 OTU 2 seqs
prokMSA_id:17307 AJ401106 verrucomicrobium DEV006 clone DEV006
prokMSA_id:19930 AJ401130 verrucomicrobium DEV179 clone DEV179
2.10.4.35359 OTU 3 seqs
prokMSA_id:1588 U60012 Prosthecobacter dejongeii str. FC1 ATCC 27091
prokMSA_id:1592 U60015 Prosthecobacter fusiformis str. FC4 DSM 8960
prokMSA_id:1593 U60013 Prosthecobacter vanneervenii str. FC2 ATCC 70019
2.10.4.7066 OTU 1 seq
prokMSA_id:1596 X90515 Verrucomicrobium spinosum str. 145 DSM 4136
2.10.4.7655 OTU 1 seq
prokMSA_id:1602 Z94005 clone T62
2.10.4.991 OTU 1 seq
prokMSA_id:55975 AJ441222 Verrucomicrobia clone P. palm C 85
2.10.5 ENVIRONMENTAL_CLONE_WCHD3-88 6 seqs
2.10.5.33242 OTU 2 seqs
prokMSA_id:45580 AJ289992 FukuN18 
prokMSA_id:73340 AJ289983 FukuN106 
2.10.5.41820 OTU 2 seqs
prokMSA_id:37483 AF217461 Candidatus Xiphinematobacter rivesi 
prokMSA_id:43374 AF217460 Candidatus Xiphinematobacter americani 
2.10.5.7656 OTU 1 seq
prokMSA_id:1603 AF050561 clone WCHD3-88
2.10.5.8677 OTU 1 seq
prokMSA_id:29275 AF217462 Candidatus Xiphinematobacter brevicolli 
2.10.6 ENVIRONMENTAL_CLONE_DA101_SUBGROUP 10 seqs
2.10.6.10464 OTU 1 seq
prokMSA_id:82424 AY218772 clone KD6-84 
2.10.6.17827 OTU 1 seq
prokMSA_id:46832 AJ244309 Riz6E2 
2.10.6.32157 OTU 2 seqs
prokMSA_id:48886 AJ401116 verrucomicrobium DEV035 clone DEV035
prokMSA_id:52421 AJ401108 verrucomicrobium DEV009 clone DEV009
2.10.6.3395 OTU 1 seq
prokMSA_id:28009 AJ401104 verrucomicrobium DEV003 clone DEV003
2.10.6.7660 OTU 1 seq
prokMSA_id:1605 AF013522 clone C019
2.10.6.7709 OTU 1 seq
prokMSA_id:1622 AF009974 clone LD19
2.10.6.7710 OTU 1 seq
prokMSA_id:1623 AF009975 clone LD29
2.10.6.7712 OTU 1 seq
prokMSA_id:1624 Y07576 clone DA101
2.10.6.7738 OTU 1 seq
prokMSA_id:1633 U51864 grassland soil sample approx. 15 mi. N of Pullman WA clone E
2.11 ANR.THERMOTERRENUM_GROUP 40 seqs
2.11.1029 OTU 1 seq
prokMSA_id:78862 AJ536890 clone JG30-KF-CM45
2.11.11675 OTU 1 seq
prokMSA_id:66918 AJ306782 clone SHA-1
2.11.12739 OTU 1 seq
prokMSA_id:68344 AF481216 Flexistipes sp. E3_33 E1 oral isolate 
2.11.14776 OTU 1 seq
prokMSA_id:38526 AB062836 clone:BCf7-04
2.11.18342 OTU 1 seq
prokMSA_id:78257 AB089065 low G+C Gram-positive clone:Rs-D89
2.11.19146 OTU 1 seq
prokMSA_id:78385 AB089066 low G+C Gram-positive clone:Rs-C88
2.11.28533 OTU 2 seqs
prokMSA_id:1653 AF027081 clone OPB46
prokMSA_id:1654 AF027082 clone OPB47
2.11.31904 OTU 2 seqs
prokMSA_id:18164 AF280829 tbr4-7 
prokMSA_id:71796 AF280820 tbr1-2 
2.11.32244 OTU 4 seqs
prokMSA_id:70882 AF234543 Dethiosulfovibrio russensis strain sr13 DSM 12577 
prokMSA_id:71455 AF234542 Dethiosulfovibrio marinus strain sr12 DSM 12538 
prokMSA_id:72749 AY005466 Dethiosulfovibrio acidaminovorans 
prokMSA_id:72998 AF234544 Dethiosulfovibrio russensis strain WS 100 DSM 12537 
2.11.32802 OTU 2 seqs
prokMSA_id:1634 U50711 Anaerobaculum thermoterrenum str. RWcit ACM 5076
prokMSA_id:42039 AJ243189 Anaerobaculum mobile strain NGA
2.11.34201 OTU 2 seqs
prokMSA_id:1637 U81706 clone vadinCA02
prokMSA_id:18399 AF280863 mle1-42 
2.11.34675 OTU 9 seqs
prokMSA_id:1642 AF125199 clone BH017
prokMSA_id:1643 AF125200 clone D084
prokMSA_id:1644 AF125201 clone D006
prokMSA_id:1645 AF125202 clone W028
prokMSA_id:1646 AF125203 clone W090
prokMSA_id:47490 AY005445 Flexistipes-like sp. oral clone BB062 
prokMSA_id:68345 AF481215 Firmicutes oral clone MCE3_120 E3 
prokMSA_id:68348 AF481214 Firmicutes oral clone MCE7_5 E2 
prokMSA_id:71329 AY005447 Flexistipes-like sp. oral clone BH007 
2.11.35097 OTU 3 seqs
prokMSA_id:1638 U81735 clone vadinHA73
prokMSA_id:50590 AF229792 TA19 
prokMSA_id:81956 AY217426 MTCE-T2 8D 
2.11.42703 OTU 2 seqs
prokMSA_id:30163 AY005444 Flexistipes-like sp. oral clone BA121 
prokMSA_id:49883 AF371930 clone p-4292-4Wa3 
2.11.5649 OTU 1 seq
prokMSA_id:19846 AB062819 clone:BCf4-02
2.11.6731 OTU 1 seq
prokMSA_id:66306 AJ420322 clone SHA-110
2.11.7493 OTU 1 seq
prokMSA_id:81485 AY217431 MTCE-T2 11H 
2.11.7742 OTU 1 seq
prokMSA_id:1636 U81658 clone vadinBB02
2.11.7768 OTU 1 seq
prokMSA_id:1641 AF129869 clone BB48
2.11.7779 OTU 1 seq
prokMSA_id:1649 AF069287 Aminobacterium colombiense str. ALA-1
2.11.7798 OTU 1 seq
prokMSA_id:1651 AF073521 Aminobacterium mobilis str. ILE-3
2.11.7810 OTU 1 seq
prokMSA_id:1659 AF027086 clone OPB72
2.12 ENVIRONMENTAL_CLONE_OPB2_GROUP 4 seqs
2.12.21982 OTU 1 seq
prokMSA_id:49231 AY050598 clone GOUTB15 
2.12.7830 OTU 1 seq
prokMSA_id:1663 AF027088 clone OPB2
2.12.7832 OTU 1 seq
prokMSA_id:1664 AB015551 str. BD3-9
2.12.7834 OTU 1 seq
prokMSA_id:1665 AB015559 str. BD4-9
2.13 NITROSPINA_SUBDIVISION 141 seqs
2.13.2 NITROSPINA_GROUP 7 seqs
2.13.2.28670 OTU 2 seqs
prokMSA_id:28642 AJ390446 soil PBS-II-35 
prokMSA_id:30315 AJ390441 soil PBS-II-5 
2.13.2.4647 OTU 1 seq
prokMSA_id:27569 AF355042 delta Arctic95C-6 
2.13.2.6534 OTU 1 seq
prokMSA_id:19976 AF355044 delta Arctic97A-12 
2.13.2.7856 OTU 1 seq
prokMSA_id:1673 L35504 Nitrospina gracilis str. Nb-211
2.13.2.7859 OTU 1 seq
prokMSA_id:1675 AB015560 str. BD4-10
2.13.2.807 OTU 1 seq
prokMSA_id:63788 AY114319 candidate division WS3 clone LD1-PA30 
2.13.3 ENVIRONMENTAL_CLONE_OS_K_GROUP 1 seq
2.13.3.1364 OTU 1 seq
prokMSA_id:63800 AY114311 candidate division WS3 clone LD1-PA13 
2.13.4 ENVIRONMENTAL_CLONE_OPB5_GROUP 34 seqs
2.13.4.10637 OTU 1 seq
prokMSA_id:52397 AF027097 Candidate division OP2 clone OPB25 complete 
2.13.4.12405 OTU 1 seq
prokMSA_id:36990 AF269003 SBR2095 
2.13.4.13383 OTU 1 seq
prokMSA_id:60591 AF407708 clone G58 
2.13.4.15245 OTU 1 seq
prokMSA_id:53679 AJ249097 SHA-89 
2.13.4.17701 OTU 1 seq
prokMSA_id:78190 AB089052 Termite group 1 clone:Rs-M73
2.13.4.18842 OTU 1 seq
prokMSA_id:33161 AF419671 a2b010 
2.13.4.20016 OTU 1 seq
prokMSA_id:77861 AB089049 Termite group 1 clone:Rs-D95
2.13.4.21141 OTU 1 seq
prokMSA_id:70747 AF419670 a2b031 
2.13.4.2702 OTU 1 seq
prokMSA_id:73076 AJ306781 clone SHA-124
2.13.4.28669 OTU 2 seqs
prokMSA_id:1680 AF027067 clone OPB5
prokMSA_id:1684 AF027068 clone OPB23
2.13.4.28688 OTU 2 seqs
prokMSA_id:1687 AF027060 clone OPB95
prokMSA_id:39529 AF402984 clone 
2.13.4.31761 OTU 12 seqs
prokMSA_id:1682 AJ250882 str. KOLL2a
prokMSA_id:19967 AF202659 Anoxic biofilm clone Pla1-14 
prokMSA_id:21761 AF202661 Anoxic biofilm clone Pla2-19 
prokMSA_id:29574 AF202655 Anoxic biofilm clone Pla1-47 
prokMSA_id:30943 AF202658 Anoxic biofilm clone Pla2-10 
prokMSA_id:32022 AF202660 Anoxic biofilm clone Pla1-1 
prokMSA_id:38720 AB054007 anoxic sludge KU2 
prokMSA_id:40152 AF202657 Anoxic biofilm clone Pla1-44 
prokMSA_id:40184 AF202656 Anoxic biofilm clone Pla1-48 
prokMSA_id:45461 AF202663 Anoxic biofilm clone Pla2-48 
prokMSA_id:48522 AF202662 Anoxic biofilm clone Pla2-22 
prokMSA_id:53683 AF375995 Candidatus Kuenenia stuttgartiensis complete ; internal tran
2.13.4.42776 OTU 2 seqs
prokMSA_id:77986 AB089051 Termite group 1 clone:Rs-H93
prokMSA_id:78103 AB089050 Termite group 1 clone:Rs-D43
2.13.4.4457 OTU 1 seq
prokMSA_id:28149 AB057453 planctomycete clone:KSU-1
2.13.4.6336 OTU 1 seq
prokMSA_id:34948 AJ133618 'KTK 36' 
2.13.4.7878 OTU 1 seq
prokMSA_id:1681 AJ224540 str. clone koll11
2.13.4.7883 OTU 1 seq
prokMSA_id:1683 AB015552 str. BD3-11
2.13.4.7890 OTU 1 seq
prokMSA_id:1688 AJ133617 clone KTK 32
2.13.4.8506 OTU 1 seq
prokMSA_id:1701 AB013270 str. NKB18
2.13.4.8508 OTU 1 seq
prokMSA_id:1703 AB004575 clone TG13
2.13.5 ENVIRONMENTAL_CLONE_RB25_GROUP 14 seqs
2.13.5.10016 OTU 1 seq
prokMSA_id:73910 AF385537 Holophaga sp. oral clone CA002 
2.13.5.14662 OTU 1 seq
prokMSA_id:76459 AJ532721 clone JG34-KF-153
2.13.5.15349 OTU 1 seq
prokMSA_id:75917 AJ519382 Holophaga sp. clone JG37-AG-81
2.13.5.18301 OTU 1 seq
prokMSA_id:78237 AJ535239 Holophaga sp. clone Hyd24-44
2.13.5.18823 OTU 1 seq
prokMSA_id:63239 AF523986 clone FW144 
2.13.5.29794 OTU 2 seqs
prokMSA_id:22777 AJ390482 soil PRR-12 
prokMSA_id:41683 AJ390460 soil PBS-III-32a 
2.13.5.39868 OTU 2 seqs
prokMSA_id:76461 AJ519669 clone GuBH2-AD-8
prokMSA_id:79044 AY177763 Gram-positive isolate 5G01 
2.13.5.5030 OTU 1 seq
prokMSA_id:73339 AF507712 soil clone S0134 
2.13.5.8195 OTU 1 seq
prokMSA_id:74326 AJ306763 clone SHA-71
2.13.5.8550 OTU 1 seq
prokMSA_id:1711 AB015586 str. BD7-11
2.13.5.8558 OTU 1 seq
prokMSA_id:1716 AB013269 str. NKB17
2.13.5.8559 OTU 1 seq
prokMSA_id:1717 AJ241004 clone Sva0515
2.13.6 ENVIRONMENTAL_CLONE_III1-8_GROUP 6 seqs
2.13.6.10389 OTU 1 seq
prokMSA_id:60180 AJ347029 clone TK29
2.13.6.14696 OTU 1 seq
prokMSA_id:76467 AJ519667 Holophaga sp. clone GuBH2-AG-47
2.13.6.17473 OTU 1 seq
prokMSA_id:78123 AJ535231 delta clone Hyd24-32
2.13.6.8561 OTU 1 seq
prokMSA_id:1718 Z95729 clone iii1-8
2.13.6.8587 OTU 1 seq
prokMSA_id:1720 AJ009479 clone SJA-88
2.13.6.8588 OTU 1 seq
prokMSA_id:1724 AJ240998 clone Sva0450
2.13.7 ENVIRONMENTAL_CLONE_32-20_GROUP 2 seqs
2.13.7.10616 OTU 1 seq
prokMSA_id:75259 AJ519397 actinobacterium clone JG37-AG-36
2.13.7.8597 OTU 1 seq
prokMSA_id:1728 Z95713 clone 32-20
2.13.8 HP.FOETIDA_GROUP 7 seqs
2.13.8.16486 OTU 1 seq
prokMSA_id:76766 AJ519665 Holophaga sp. clone GuBH2-AD-9
2.13.8.16832 OTU 1 seq
prokMSA_id:62398 AF529124 clone FTLM45 
2.13.8.16833 OTU 1 seq
prokMSA_id:62399 AF529120 delta clone FTLM205 
2.13.8.20613 OTU 1 seq
prokMSA_id:55664 AF529125 Acidobacterium group clone FTLM5 
2.13.8.8620 OTU 1 seq
prokMSA_id:1732 X77215 Holophaga foetida str. TMBS4 DSM 6591
2.13.8.8622 OTU 1 seq
prokMSA_id:1733 AJ009478 clone SJA-87
2.13.8.8629 OTU 1 seq
prokMSA_id:1736 U41563 "Geothrix fermentans"
2.13.9 ENVIRONMENTAL_CLONE_S027_GROUP 19 seqs
2.13.9.13602 OTU 1 seq
prokMSA_id:75650 AY154482 earthworm intestine clone wi14 
2.13.9.14146 OTU 1 seq
prokMSA_id:75727 AJ519393 Holophaga sp. clone JG37-AG-149
2.13.9.20145 OTU 1 seq
prokMSA_id:41153 AF312219 Pietermaritzburg Y14-5 
2.13.9.21460 OTU 1 seq
prokMSA_id:78633 AJ536874 Holophaga sp. clone JG30a-KF-86
2.13.9.31070 OTU 2 seqs
prokMSA_id:16412 Z95714 species clone 32-21
prokMSA_id:44004 AF245036 17F9 
2.13.9.33212 OTU 2 seqs
prokMSA_id:1745 Z95708 clone 11-24
prokMSA_id:36828 Z95723 species clone RB43
2.13.9.35439 OTU 6 seqs
prokMSA_id:1749 Z95709 clone 11-25
prokMSA_id:47841 AF234743 sludge H44 
prokMSA_id:51292 AF234751 sludge S6 
prokMSA_id:56714 AF368180 Acidobacterium group clone SBR1013 
prokMSA_id:66557 AY094624 clone SM1H07 
prokMSA_id:81698 AY211077 Acidobacteria clone VC47 
2.13.9.42638 OTU 2 seqs
prokMSA_id:1767 AF173824 clone LB3-92
prokMSA_id:1768 AF173822 clone LB3-30
2.13.9.8725 OTU 1 seq
prokMSA_id:1776 AF097766 clone 2951
2.13.9.8768 OTU 1 seq
prokMSA_id:1791 AF013554 clone S027
2.13.9.8777 OTU 1 seq
prokMSA_id:1797 AF013560 clone S111
2.13.11 ENVIRONMENTAL_CLONE_MB1228_GROUP 25 seqs
2.13.11.11874 OTU 1 seq
prokMSA_id:76022 AJ532723 clone JG34-KF-337
2.13.11.13963 OTU 1 seq
prokMSA_id:46235 AF423279 soil clone 576-2 
2.13.11.15184 OTU 1 seq
prokMSA_id:53652 AF323775 clone BA059 complete 
2.13.11.17267 OTU 1 seq
prokMSA_id:76897 AJ532722 clone JG34-KF-257
2.13.11.19648 OTU 1 seq
prokMSA_id:18226 Z95731 species clone iii3-7
2.13.11.2589 OTU 1 seq
prokMSA_id:80248 AY192282 candidate division SPAM clone P2-8G 
2.13.11.29250 OTU 2 seqs
prokMSA_id:17129 AF234695 sludge H3 
prokMSA_id:45334 AF234731 sludge A34 
2.13.11.41495 OTU 2 seqs
prokMSA_id:17667 Z95734 species clone mb2424
prokMSA_id:20725 AF423235 soil clone 192-2 
2.13.11.41688 OTU 3 seqs
prokMSA_id:1807 Y12597 clone DA008
prokMSA_id:75545 AJ534635 Acidobacterium group clone JG36-TzT-99
prokMSA_id:75999 AJ532719 clone JG34-KF-113
2.13.11.42029 OTU 2 seqs
prokMSA_id:1815 Z95733 clone mb1228
prokMSA_id:71241 AF280856 mle1-25 
2.13.11.42775 OTU 2 seqs
prokMSA_id:48016 Z95736 species clone mb2431
prokMSA_id:78582 AJ536875 Holophaga sp. clone JG30a-KF-145
2.13.11.5384 OTU 1 seq
prokMSA_id:35478 Z95737 species clone mb3429
2.13.11.8794 OTU 1 seq
prokMSA_id:28670 AF234701 sludge A22 
2.13.11.9395 OTU 1 seq
prokMSA_id:1808 Z95726 clone ii3-36
2.13.11.9396 OTU 1 seq
prokMSA_id:1809 AB009195 clone RFN4
2.13.11.9412 OTU 1 seq
prokMSA_id:1813 AF154085 clone BPC015
2.13.11.9413 OTU 1 seq
prokMSA_id:1814 AF154095 clone BPC066
2.13.11.9416 OTU 1 seq
prokMSA_id:1818 Z95719 clone RB27
2.13.11.9418 OTU 1 seq
prokMSA_id:1819 AF154083 clone BPC102
2.13.12 ENVIRONMENTAL_CLONE_RB40_GROUP 23 seqs
2.13.12.12482 OTU 1 seq
prokMSA_id:76114 AJ534631 clone JG36-TzT-10
2.13.12.12858 OTU 1 seq
prokMSA_id:75589 AJ519375 Holophaga sp. clone JG37-AG-56
2.13.12.14448 OTU 1 seq
prokMSA_id:77025 AJ519389 Holophaga sp. clone JG37-AG-117
2.13.12.14844 OTU 1 seq
prokMSA_id:52982 Z95725 species clone ii3-15
2.13.12.15324 OTU 1 seq
prokMSA_id:76566 AJ519367 Holophaga sp. clone JG37-AG-29
2.13.12.2520 OTU 1 seq
prokMSA_id:18847 Z95727 species clone ii3-7
2.13.12.42532 OTU 7 seqs
prokMSA_id:22391 Z95710 species clone 32-10
prokMSA_id:75514 AJ532717 clone JG34-KF-27
prokMSA_id:75652 AJ532720 clone JG34-KF-135
prokMSA_id:75679 AJ519368 Holophaga sp. clone JG37-AG-31
prokMSA_id:76119 AJ534636 Acidobacterium group clone JG36-TzT-200
prokMSA_id:76504 AJ534637 Acidobacterium group clone JG36-TzT-202
prokMSA_id:76925 AJ519666 Holophaga sp. clone GuBH2-AD-16
2.13.12.42867 OTU 2 seqs
prokMSA_id:75775 AJ519387 Holophaga sp. clone JG37-AG-112
prokMSA_id:77004 AJ519392 Holophaga sp. clone JG37-AG-145
2.13.12.4500 OTU 1 seq
prokMSA_id:65464 AY102321 clone a13114 
2.13.12.7786 OTU 1 seq
prokMSA_id:28512 AF234142 #0319-7F19 
2.13.12.8256 OTU 1 seq
prokMSA_id:51476 Z95735 species clone mb2430
2.13.12.8952 OTU 1 seq
prokMSA_id:75044 AJ519379 Holophaga sp. clone JG37-AG-73
2.13.12.9437 OTU 1 seq
prokMSA_id:1827 AF013527 clone C028
2.13.12.9439 OTU 1 seq
prokMSA_id:1828 AF013534 clone C112
2.13.12.9457 OTU 1 seq
prokMSA_id:1833 Y07586 clone DA023
2.13.12.9483 OTU 1 seq
prokMSA_id:1857 Z95721 clone RB40
2.13.99 VARIOUS 3 seqs
2.13.99.38927 OTU 3 seqs
prokMSA_id:23209 Z95724 species clone ii3-12
prokMSA_id:31800 Z95728 species clone iii1-15
prokMSA_id:76544 AJ519385 Holophaga sp. clone JG37-AG-99
2.14 FLS.SINUSARABICI_ASSEMBLAGE 14 seqs
2.14.16625 OTU 1 seq
prokMSA_id:70142 AB086060 Deferribacter desulfuricans 
2.14.31995 OTU 5 seqs
prokMSA_id:1867 AF059186 str. UNSW2.6liv
prokMSA_id:1868 AF059187 str. HRI1cae
prokMSA_id:1869 AF059188 str. HRI3liv
prokMSA_id:1872 AF157055 str. ASF 457
prokMSA_id:25453 AF371927 clone p-2881-6C5 
2.14.33880 OTU 2 seqs
prokMSA_id:1866 X95744 Geovibrio ferrireducens str. PAL-1
prokMSA_id:25709 AJ299402 Geovibrio agilis 
2.14.41766 OTU 2 seqs
prokMSA_id:57548 AJ515882 Deferribacter sp. JR strain JR
prokMSA_id:57551 AJ515881 Deferribacter sp. DR strain DR
2.14.5852 OTU 1 seq
prokMSA_id:43329 AF146526 Denitrovibrio acetophilus 
2.14.9501 OTU 1 seq
prokMSA_id:1865 AF068790 VC2.1 Bac9 complete 
2.14.9527 OTU 1 seq
prokMSA_id:1873 AF157057 str. Lincoln Park 3
2.14.9530 OTU 1 seq
prokMSA_id:1875 X81319 Chrysiogenes arsenatis str. BAL-1
2.15 FLEXIBACTER-CYTOPHAGA-BACTEROIDES 1166 seqs
2.15.1 BACTEROIDES_AND_CYTOPHAGA 845 seqs
2.15.1.2 BACTEROIDES_GROUP 489 seqs
2.15.1.2.1 RIK.MICROFUSUS_SUBGROUP 24 seqs
2.15.1.2.1.1091 OTU 1 seq
prokMSA_id:80087 AY188305 clone KD3-5 
2.15.1.2.1.11249 OTU 1 seq
prokMSA_id:52441 AF371923 clone p-2158-s959-3 
2.15.1.2.1.11369 OTU 1 seq
prokMSA_id:75351 AJ534683 bacteroidetes clone S15A-MN74
2.15.1.2.1.1645 OTU 1 seq
prokMSA_id:80101 AF449765 CFB group clone ML1218M-32 
2.15.1.2.1.16689 OTU 1 seq
prokMSA_id:38895 AF371919 clone p-2202-s959-3 
2.15.1.2.1.18294 OTU 1 seq
prokMSA_id:78232 AB088944 Bacteroidaceae clone:Rs-E62
2.15.1.2.1.19201 OTU 1 seq
prokMSA_id:77751 AB088921 CFB group clone:Rs-E47
2.15.1.2.1.19299 OTU 1 seq
prokMSA_id:77794 AB088945 Bacteroidaceae clone:Rs-F73
2.15.1.2.1.20876 OTU 1 seq
prokMSA_id:77967 AB088925 Bacteroidaceae clone:Rs-D38
2.15.1.2.1.28496 OTU 2 seqs
prokMSA_id:22459 AJ408963 clone HuCA7
prokMSA_id:74420 AF132279 adhufec73 
2.15.1.2.1.30084 OTU 2 seqs
prokMSA_id:1880 AF001701 clone RC9
prokMSA_id:1881 AF001735 clone RF2
2.15.1.2.1.32390 OTU 2 seqs
prokMSA_id:23709 AY005071 Porphyromonas-like sp. oral clone DA064 
prokMSA_id:55622 AF481207 Bacteroidales oral clone MCE7_120 E3 
2.15.1.2.1.4595 OTU 1 seq
prokMSA_id:28192 AJ249109 SHA-7 
2.15.1.2.1.5224 OTU 1 seq
prokMSA_id:66176 AJ488087 clone IIB-27
2.15.1.2.1.5310 OTU 1 seq
prokMSA_id:66194 AJ488069 clone IA-12
2.15.1.2.1.7171 OTU 1 seq
prokMSA_id:21213 AF371920 clone p-1628-c5 
2.15.1.2.1.9532 OTU 1 seq
prokMSA_id:1878 U81709 clone vadinHA21
2.15.1.2.1.9539 OTU 1 seq
prokMSA_id:1883 AF001760 clone RF28
2.15.1.2.1.9538 OTU 1 seq
prokMSA_id:1882 AF001747 clone RF15
2.15.1.2.1.9540 OTU 1 seq
prokMSA_id:1884 AF050544 clone WCHB1-29
2.15.1.2.1.9541 OTU 1 seq
prokMSA_id:1885 U81676 clone vadinBC27
2.15.1.2.4 CY.FERMENTANS_SUBGROUP 51 seqs
2.15.1.2.4.10129 OTU 1 seq
prokMSA_id:1900 AF050545 clone WCHB1-69
2.15.1.2.4.10131 OTU 1 seq
prokMSA_id:1906 U81712 clone vadinHA17
2.15.1.2.4.10130 OTU 1 seq
prokMSA_id:1901 AF154059 clone 1_60
2.15.1.2.4.10134 OTU 1 seq
prokMSA_id:1909 AJ007873 clone LD21
2.15.1.2.4.10165 OTU 1 seq
prokMSA_id:1914 AJ240979 Cytophaga Cytophaga Sva1038
2.15.1.2.4.10164 OTU 1 seq
prokMSA_id:1912 AB015532 Cytophaga sp. str. BD2-2
2.15.1.2.4.10163 OTU 1 seq
prokMSA_id:1911 AB015525 Cytophaga sp. str. BD1-16
2.15.1.2.4.10265 OTU 1 seq
prokMSA_id:59562 AY134906 Bacteroidetes sp. oral clone FX069 
2.15.1.2.4.10647 OTU 1 seq
prokMSA_id:75260 AJ534686 bacteroidetes clone S15A-MN128
2.15.1.2.4.11351 OTU 1 seq
prokMSA_id:52484 AJ249105 SHA-38 
2.15.1.2.4.1178 OTU 1 seq
prokMSA_id:42167 AF419690 C1_B008 
2.15.1.2.4.1319 OTU 1 seq
prokMSA_id:40910 AF323765 clone BA043 complete 
2.15.1.2.4.14326 OTU 1 seq
prokMSA_id:75791 AF550591 Bacteroidetes Ko710 
2.15.1.2.4.14808 OTU 1 seq
prokMSA_id:76499 AJ534685 bacteroidetes clone S15A-MN91
2.15.1.2.4.16414 OTU 1 seq
prokMSA_id:16567 AJ249101 SHA-25 
2.15.1.2.4.16752 OTU 1 seq
prokMSA_id:78000 AB088919 Bacteroidaceae clone:Rs-P82
2.15.1.2.4.16825 OTU 1 seq
prokMSA_id:62390 AF529128 Bacteroidetes clone FTLpost3 
2.15.1.2.4.17565 OTU 1 seq
prokMSA_id:61849 AF449260 CFB group clone R76-B58 
2.15.1.2.4.17608 OTU 1 seq
prokMSA_id:78165 AJ535256 Cytophagales clone Hyd-B2-1
2.15.1.2.4.18421 OTU 1 seq
prokMSA_id:77623 AJ535255 clone Hyd89-65
2.15.1.2.4.18832 OTU 1 seq
prokMSA_id:70461 AF132281 adhufec84 
2.15.1.2.4.1893 OTU 1 seq
prokMSA_id:80197 AY188304 clone KD3-17 
2.15.1.2.4.21220 OTU 1 seq
prokMSA_id:56341 AF507859 Bacteroidetes clone ML635J-40 
2.15.1.2.4.2177 OTU 1 seq
prokMSA_id:27268 AJ249107 SHA-54 
2.15.1.2.4.21935 OTU 1 seq
prokMSA_id:56432 AJ441240 CFB group clone P. palm A 10
2.15.1.2.4.21938 OTU 1 seq
prokMSA_id:70875 AF275923 AA39 
2.15.1.2.4.2295 OTU 1 seq
prokMSA_id:49501 AF351234 CFB group clone 8-1 
2.15.1.2.4.2789 OTU 1 seq
prokMSA_id:41715 AF254391 UASB_TL13 complete 
2.15.1.2.4.2979 OTU 1 seq
prokMSA_id:57462 AJ441218 CFB group clone P. palm C/A 221
2.15.1.2.4.2980 OTU 1 seq
prokMSA_id:57463 AJ441221 CFB group clone P. palm C/A 33
2.15.1.2.4.3011 OTU 1 seq
prokMSA_id:33956 AJ229182 from anoxic bulk soil clone BSV13
2.15.1.2.4.3146 OTU 1 seq
prokMSA_id:49689 AJ307947 mRNA clone sipK20
2.15.1.2.4.33783 OTU 2 seqs
prokMSA_id:21292 AF361199 Cytophagales clone 26 
prokMSA_id:40351 AF361198 Cytophagales clone 17 
2.15.1.2.4.4009 OTU 1 seq
prokMSA_id:81077 AY218604 clone KD3-136 
2.15.1.2.4.4024 OTU 1 seq
prokMSA_id:79883 AF449781 CFB group clone ML602M-17 
2.15.1.2.4.42627 OTU 4 seqs
prokMSA_id:62691 AF507868 Bacteroidetes clone ML602J-15 
prokMSA_id:63864 AF452594 CFB group clone ML110J-8 
prokMSA_id:63865 AF452592 CFB group clone ML110J-35 
prokMSA_id:79684 AF449771 CFB group clone ML310M-1 
2.15.1.2.4.4941 OTU 1 seq
prokMSA_id:81188 AY216439 clone KM67 
2.15.1.2.4.5194 OTU 1 seq
prokMSA_id:66165 AJ488099 clone IIIB-28
2.15.1.2.4.5198 OTU 1 seq
prokMSA_id:66167 AJ488097 clone IIIB-1
2.15.1.2.4.5279 OTU 1 seq
prokMSA_id:66189 AJ488076 clone IA-5
2.15.1.2.4.6924 OTU 1 seq
prokMSA_id:80791 AF449768 CFB group clone ML1228J-9 
2.15.1.2.4.7142 OTU 1 seq
prokMSA_id:27877 AJ290056 FukuN63 
2.15.1.2.4.7295 OTU 1 seq
prokMSA_id:74219 AF323778 clone BA008 complete 
2.15.1.2.4.7439 OTU 1 seq
prokMSA_id:67037 AJ306738 clone SHA-94
2.15.1.2.4.8018 OTU 1 seq
prokMSA_id:82140 AY167327 Bacteroidetes ANT9285 
2.15.1.2.4.8064 OTU 1 seq
prokMSA_id:81507 AY216441 clone KM93 
2.15.1.2.4.9548 OTU 1 seq
prokMSA_id:1895 AF121885 clone Phenol-4
2.15.1.2.5 ML.AGAROVORANS_SUBGROUP 2 seqs
2.15.1.2.5.10172 OTU 1 seq
prokMSA_id:1918 AF050543 clone WCHB1-32
2.15.1.2.5.10572 OTU 1 seq
prokMSA_id:81805 AY218577 clone KD2-16 
2.15.1.2.6 BAC.SPLANCHNICUS_SUBGROUP 2 seqs
2.15.1.2.6.10191 OTU 1 seq
prokMSA_id:1921 AF029039 clone SB-1
2.15.1.2.6.8522 OTU 1 seq
prokMSA_id:73753 AF132284 adhufec291 
2.15.1.2.7 PPM.MACACAE_SUBGROUP 122 seqs
2.15.1.2.7.10014 OTU 1 seq
prokMSA_id:44489 AJ400266 clone F5
2.15.1.2.7.10194 OTU 1 seq
prokMSA_id:1923 AF001749 clone RF17
2.15.1.2.7.10201 OTU 1 seq
prokMSA_id:1927 AB009226 clone RFN79
2.15.1.2.7.10266 OTU 1 seq
prokMSA_id:1954 AF001694 clone RC2
2.15.1.2.7.10263 OTU 1 seq
prokMSA_id:1952 X83954 Bacteroides merdae ATCC 43184
2.15.1.2.7.10261 OTU 1 seq
prokMSA_id:1950 X76260 Porphyromonas cansulci VPB 4875
2.15.1.2.7.10262 OTU 1 seq
prokMSA_id:1951 X76261 Porphyromonas canoris VPB 4882
2.15.1.2.7.10247 OTU 1 seq
prokMSA_id:1941 X76259 Porphyromonas cangingivalis VPB 4874
2.15.1.2.7.10287 OTU 1 seq
prokMSA_id:1960 AF153865 clone adhufec77.25
2.15.1.2.7.10268 OTU 1 seq
prokMSA_id:1955 AF001707 clone RC16
2.15.1.2.7.10271 OTU 1 seq
prokMSA_id:1957 AF001767 clone RF36
2.15.1.2.7.10275 OTU 1 seq
prokMSA_id:1959 AB009243 clone RFN96
2.15.1.2.7.10273 OTU 1 seq
prokMSA_id:1958 AB009231 clone RFN84
2.15.1.2.7.10291 OTU 1 seq
prokMSA_id:1963 AF129860 clone BB23
2.15.1.2.7.10312 OTU 1 seq
prokMSA_id:1975 U81722 clone vadinHA54
2.15.1.2.7.10294 OTU 1 seq
prokMSA_id:1966 U41355 str. CDC Group DF-3
2.15.1.2.7.10299 OTU 1 seq
prokMSA_id:1969 AB009197 clone RFN41
2.15.1.2.7.10314 OTU 1 seq
prokMSA_id:1976 U81730 clone vadinHA28
2.15.1.2.7.10803 OTU 1 seq
prokMSA_id:43915 AF385565 Bacteroides sp. oral clone BU045 
2.15.1.2.7.11159 OTU 1 seq
prokMSA_id:28974 AF371918 clone p-1862-c3 
2.15.1.2.7.11575 OTU 1 seq
prokMSA_id:44678 AB062769 Bacteroides sp. clone:BCf1-03
2.15.1.2.7.11798 OTU 1 seq
prokMSA_id:36893 AF275919 AA17 
2.15.1.2.7.12068 OTU 1 seq
prokMSA_id:51927 AY008308 Bacteroides cf. forsythus oral clone BU063 
2.15.1.2.7.13510 OTU 1 seq
prokMSA_id:38316 AB062835 clone:BCf7-02
2.15.1.2.7.16777 OTU 1 seq
prokMSA_id:31626 AB078842 Bacteroidales str. WB4 
2.15.1.2.7.17433 OTU 1 seq
prokMSA_id:25154 AJ318126 Bacteroidetes clone BIfciii40
2.15.1.2.7.17547 OTU 1 seq
prokMSA_id:78147 AB088931 Bacteroidaceae clone:Rs-D56
2.15.1.2.7.17571 OTU 1 seq
prokMSA_id:78150 AB088922 Bacteroidaceae clone:Rs-B92
2.15.1.2.7.17790 OTU 1 seq
prokMSA_id:16733 AF371912 clone p-184-o5 
2.15.1.2.7.17846 OTU 1 seq
prokMSA_id:77581 AB074602 CFB group clone:APe2_39
2.15.1.2.7.17879 OTU 1 seq
prokMSA_id:77598 AB088923 Bacteroidaceae clone:Rs-D66
2.15.1.2.7.17941 OTU 1 seq
prokMSA_id:46885 AY005072 Bacteroides-like sp. oral clone AU126 
2.15.1.2.7.18164 OTU 1 seq
prokMSA_id:63166 AB034799 Porphyromonas canis 
2.15.1.2.7.18434 OTU 1 seq
prokMSA_id:78288 AB088943 Bacteroidaceae clone:Rs-D29
2.15.1.2.7.18457 OTU 1 seq
prokMSA_id:78297 AB088937 Bacteroidaceae clone:Rs-E83
2.15.1.2.7.18954 OTU 1 seq
prokMSA_id:78300 AB088934 Bacteroidaceae clone:Rs-F63
2.15.1.2.7.19079 OTU 1 seq
prokMSA_id:55494 AJ488070 clone IA-16
2.15.1.2.7.19088 OTU 1 seq
prokMSA_id:77707 AB088927 Bacteroidaceae clone:Rs-N56
2.15.1.2.7.19243 OTU 1 seq
prokMSA_id:77773 AB088940 Bacteroidaceae clone:Rs-P41
2.15.1.2.7.20075 OTU 1 seq
prokMSA_id:77887 AB088918 Bacteroidaceae clone:Rs-M03
2.15.1.2.7.20213 OTU 1 seq
prokMSA_id:40523 AF371922 clone p-262-o5 
2.15.1.2.7.20334 OTU 1 seq
prokMSA_id:49015 AF371913 clone p-251-o5 
2.15.1.2.7.20800 OTU 1 seq
prokMSA_id:77928 AB088932 Bacteroidaceae clone:Rs-J02
2.15.1.2.7.21097 OTU 1 seq
prokMSA_id:41295 AJ295642 KF-Gitt2-47 
2.15.1.2.7.21342 OTU 1 seq
prokMSA_id:19082 AB062826 clone:BCf5-08
2.15.1.2.7.21702 OTU 1 seq
prokMSA_id:72093 AF371910 clone p-987-s962-5 
2.15.1.2.7.2479 OTU 1 seq
prokMSA_id:49573 AF349759 TCE5 
2.15.1.2.7.25168 OTU 2 seqs
prokMSA_id:1929 AF157056 Bacteroides ASF519 str. ASF 519
prokMSA_id:69900 AF357554 mpn-isolate group 6 
2.15.1.2.7.31316 OTU 3 seqs
prokMSA_id:1924 AB009193 clone RFN37
prokMSA_id:1925 AB009207 clone RFN50
prokMSA_id:1926 AB009209 clone RFN6
2.15.1.2.7.31349 OTU 3 seqs
prokMSA_id:1968 AB009171 clone RFN12
prokMSA_id:1970 AB009199 clone RFN43
prokMSA_id:1972 AB009233 clone RFN86
2.15.1.2.7.31627 OTU 12 seqs
prokMSA_id:1922 X73962 Bacteroides forsythus FDC 331
prokMSA_id:22635 AB053946 Bacteroides forsythus strain:Sai5
prokMSA_id:34893 AB053942 Bacteroides forsythus strain:KM3
prokMSA_id:36831 AB053938 Bacteroides forsythus strain:FJ1
prokMSA_id:38366 AB053941 Bacteroides forsythus strain:HG3
prokMSA_id:38992 AB053943 Bacteroides forsythus strain:Ko3
prokMSA_id:40709 AB053939 Bacteroides forsythus strain:G9
prokMSA_id:40924 AB053944 Bacteroides forsythus strain:KS16
prokMSA_id:46214 AB053945 Bacteroides forsythus strain:L7
prokMSA_id:46574 AB053947 Bacteroides forsythus strain:TR6
prokMSA_id:49167 AB053940 Bacteroides forsythus strain:HA3
prokMSA_id:51467 AB035460 Bacteroides forsythus strain:ATCC43037
2.15.1.2.7.31678 OTU 10 seqs
prokMSA_id:1962 X73964 Porphyromonas gingivalis DSM 20709
prokMSA_id:17881 AF287987 Porphyromonas gingivalis 
prokMSA_id:33300 AF414809 Porphyromonas gingivalis strain ATCC 33277 
prokMSA_id:33338 AB035457 Porphyromonas gingivalis strain:SUNY1021
prokMSA_id:42789 AF414818 Porphyromonas gingivalis strain 28-PGI 
prokMSA_id:42887 AF414811 Porphyromonas gingivalis strain 2-PGI 
prokMSA_id:44500 AF414814 Porphyromonas gingivalis strain 42-PGI 
prokMSA_id:46900 AB035458 Porphyromonas gingivalis strain:A7A1-28
prokMSA_id:49110 AB035456 Porphyromonas gingivalis strain:W83
prokMSA_id:53253 AB035459 Porphyromonas gingivalis strain:ATCC33277
2.15.1.2.7.31802 OTU 3 seqs
prokMSA_id:1938 U43697 str. PUS3.23
prokMSA_id:28004 AY005069 Porphyromonas sp. oral clone F016 
prokMSA_id:29149 AY005067 Porphyromonas sp. oral clone AJ002 
2.15.1.2.7.32116 OTU 3 seqs
prokMSA_id:1928 AB003389 Bacteroides sp. str. sp4
prokMSA_id:1973 AB003390 Bacteroides sp. str. sp14
prokMSA_id:66177 AJ488088 clone IIB-29
2.15.1.2.7.32131 OTU 2 seqs
prokMSA_id:1943 AB009214 clone RFN67
prokMSA_id:1971 AB009221 clone RFN73
2.15.1.2.7.32258 OTU 2 seqs
prokMSA_id:31170 AF371916 clone p-2177-s959-3 
prokMSA_id:35721 AF371917 clone p-816-a5 
2.15.1.2.7.32386 OTU 2 seqs
prokMSA_id:18314 AF366271 Porphyromonas sp. clone DS033 
prokMSA_id:72237 AY008310 Porphyromonas sp. oral clone CW034 
2.15.1.2.7.33167 OTU 2 seqs
prokMSA_id:1967 AF001748 clone RF16
prokMSA_id:56220 AF544208 Rumen YS3 
2.15.1.2.7.3819 OTU 1 seq
prokMSA_id:49714 AJ400263 clone S24-7
2.15.1.2.7.4039 OTU 1 seq
prokMSA_id:81083 AY169416 Bacteroides merdae 
2.15.1.2.7.4109 OTU 1 seq
prokMSA_id:50365 AF280841 mle1-2 
2.15.1.2.7.41606 OTU 6 seqs
prokMSA_id:32807 AF285873 Porphyromonas gulae strain chien 4.2 
prokMSA_id:35989 AF208290 Porphyromonas gulae 
prokMSA_id:39994 AF285872 Porphyromonas gulae strain ours 3.1 
prokMSA_id:42871 AF287986 Porphyromonas gulae 
prokMSA_id:47786 AF285874 Porphyromonas gulae strain B 243 
prokMSA_id:71638 AF285871 Porphyromonas gulae strain chat 3.1 
2.15.1.2.7.42148 OTU 6 seqs
prokMSA_id:28623 AF385560 Porphyromonas sp. oral clone BS045 
prokMSA_id:30493 AY008313 Porphyromonas sp. oral clone EP003 
prokMSA_id:30507 AF385561 Porphyromonas sp. oral clone BS077 
prokMSA_id:72284 AF385555 Porphyromonas sp. oral clone BR037 
prokMSA_id:72586 AF385516 Porphyromonas sp. oral clone DP023 
prokMSA_id:74406 AF393476 Porphyromonas sp. oral clone AW032 
2.15.1.2.7.42798 OTU 2 seqs
prokMSA_id:78037 AB088917 Bacteroidaceae clone:Rs-N74
prokMSA_id:78052 AB088935 Bacteroidaceae clone:Rs-M16
2.15.1.2.7.42841 OTU 4 seqs
prokMSA_id:81280 AY217435 MTCE-T2 5D 
prokMSA_id:81365 AY217434 MTCE-T2 11A 
prokMSA_id:81837 AY217437 MTCE-T2 9D 
prokMSA_id:82304 AY217409 BTCE-T2 1E 
2.15.1.2.7.42864 OTU 2 seqs
prokMSA_id:77941 AB088936 Bacteroidaceae clone:Rs-B48
prokMSA_id:78277 AB088926 Bacteroidaceae clone:Rs-M12
2.15.1.2.7.4490 OTU 1 seq
prokMSA_id:41939 AJ307946 mRNA clone sipK57
2.15.1.2.7.4737 OTU 1 seq
prokMSA_id:79914 AY193184 Bacteroidetes clone GalB60 
2.15.1.2.7.5870 OTU 1 seq
prokMSA_id:81298 AY217379 LTCE-T2A 1A 
2.15.1.2.7.7532 OTU 1 seq
prokMSA_id:81498 AB100456 Bacteroidaceae clone: Rs-003
2.15.1.2.7.8163 OTU 1 seq
prokMSA_id:82191 AB100460 Bacteroidaceae clone: Rs-106
2.15.1.2.7.8949 OTU 1 seq
prokMSA_id:81604 AB100459 Bacteroidaceae clone: Rs-096
2.15.1.2.7.9349 OTU 1 seq
prokMSA_id:74492 AJ318110 Bacteroidetes clone BIci17
2.15.1.2.7.9355 OTU 1 seq
prokMSA_id:74495 AF132275 adhufec55 
2.15.1.2.8 BAC.FRAGILIS_SUBGROUP 93 seqs
2.15.1.2.8.10083 OTU 1 seq
prokMSA_id:73937 AF371904 clone p-1273-a5 
2.15.1.2.8.10329 OTU 1 seq
prokMSA_id:1986 X83951 Bacteroides caccae ATCC 43185
2.15.1.2.8.10523 OTU 1 seq
prokMSA_id:52362 AJ289176 E1-K8 
2.15.1.2.8.11133 OTU 1 seq
prokMSA_id:28952 AF385513 Prevotella sp. oral clone DO039 
2.15.1.2.8.12581 OTU 1 seq
prokMSA_id:52643 AB050106 Bacteroides fragilis 
2.15.1.2.8.12799 OTU 1 seq
prokMSA_id:68356 AF481203 Bacteroidales oral clone MCE7_20 E1 
2.15.1.2.8.13595 OTU 1 seq
prokMSA_id:45562 AJ318147 clone BIhiii38
2.15.1.2.8.14193 OTU 1 seq
prokMSA_id:38438 AJ400234 clone F1
2.15.1.2.8.15664 OTU 1 seq
prokMSA_id:60914 AY126616 84634 
2.15.1.2.8.15908 OTU 1 seq
prokMSA_id:45921 AF371909 clone p-240-o5 
2.15.1.2.8.1601 OTU 1 seq
prokMSA_id:49461 AF371900 clone p-4305-4Wa3 
2.15.1.2.8.168 OTU 1 seq
prokMSA_id:48647 AF227834 str. 31285 
2.15.1.2.8.17405 OTU 1 seq
prokMSA_id:25137 AJ400264 clone L11-6
2.15.1.2.8.17450 OTU 1 seq
prokMSA_id:25165 AJ408982 clone HuCA34
2.15.1.2.8.17605 OTU 1 seq
prokMSA_id:77508 AF524856 26-4b2 
2.15.1.2.8.17678 OTU 1 seq
prokMSA_id:24578 AJ315484 isolate HuCC30
2.15.1.2.8.18250 OTU 1 seq
prokMSA_id:78217 AB088941 Bacteroidaceae clone:Rs-P01
2.15.1.2.8.19033 OTU 1 seq
prokMSA_id:78342 AB088939 Bacteroidaceae clone:Rs-F14
2.15.1.2.8.20760 OTU 1 seq
prokMSA_id:77917 AB088938 Bacteroidaceae clone:Rs-P65
2.15.1.2.8.20899 OTU 1 seq
prokMSA_id:77973 AB088946 Bacteroidaceae clone:Rs-M91
2.15.1.2.8.20998 OTU 1 seq
prokMSA_id:71331 AF132263 adhufec355 
2.15.1.2.8.21291 OTU 1 seq
prokMSA_id:32849 AB062815 clone:BCf3-07
2.15.1.2.8.27420 OTU 2 seqs
prokMSA_id:2035 L16485 Bacteroides eggerthii NCTC 11185
prokMSA_id:70488 AB050107 Bacteroides eggerthii 
2.15.1.2.8.2818 OTU 1 seq
prokMSA_id:72466 AJ416906 Bacteroides sp. 0103 800 strain 0103 800
2.15.1.2.8.30278 OTU 2 seqs
prokMSA_id:41973 AF371905 clone p-1018-a5 
prokMSA_id:52212 AF371906 clone p-1091-a5 
2.15.1.2.8.31069 OTU 2 seqs
prokMSA_id:28973 AF132240 adhufec153 
prokMSA_id:47157 AB050110 Bacteroides uniformis 
2.15.1.2.8.31376 OTU 6 seqs
prokMSA_id:1990 AB021156 Bacteroides acidofaciens
prokMSA_id:1991 AB021158 Bacteroides acidofaciens str. A1
prokMSA_id:1993 AB021160 Bacteroides acidofaciens str. A29
prokMSA_id:1995 AB021162 Bacteroides acidofaciens str. A32
prokMSA_id:1996 AB021163 Bacteroides acidofaciens str. A37
prokMSA_id:1997 AB021164 Bacteroides acidofaciens str. A40
2.15.1.2.8.31756 OTU 4 seqs
prokMSA_id:1983 AF139525 Bacteroides AR29 str. AR29
prokMSA_id:46476 AB050109 Bacteroides thetaiotaomicron 
prokMSA_id:71812 AF530346 clone cadhufec17h05sav 
prokMSA_id:72562 AF132251 adhufec23 
2.15.1.2.8.32230 OTU 21 seqs
prokMSA_id:2000 M11656 Bacteroides fragilis
prokMSA_id:2001 M61006 Bacteroides fragilis ATCC 25285
prokMSA_id:2003 X83935 Bacteroides fragilis ATCC 25285
prokMSA_id:2004 X83944 Bacteroides fragilis str. Bfr189
prokMSA_id:2005 X83945 Bacteroides fragilis str. Bfr901
prokMSA_id:2006 X83946 Bacteroides fragilis str. Bfr920
prokMSA_id:2007 X83947 Bacteroides fragilis str. KSB1486
prokMSA_id:2008 X83948 Bacteroides fragilis str. 2393
prokMSA_id:2009 X83949 Bacteroides fragilis str. 4117
prokMSA_id:2010 X83950 Bacteroides fragilis str. 4225
prokMSA_id:2011 X83936 Bacteroides fragilis str. AIP 638
prokMSA_id:2012 X83937 Bacteroides fragilis str. 790
prokMSA_id:2013 X83938 Bacteroides fragilis str. 2991
prokMSA_id:2014 X83939 Bacteroides fragilis str. 6791
prokMSA_id:2015 X83940 Bacteroides fragilis str. 12491
prokMSA_id:2016 X83941 Bacteroides fragilis str. TAL3636
prokMSA_id:2017 X83942 Bacteroides fragilis str. B119
prokMSA_id:2018 X83943 Bacteroides fragilis str. Bfr81
prokMSA_id:2019 AF133539 Bacteroides CIP103040 str. 040 CIP 103
prokMSA_id:51984 AJ408981 clone HuCA33
prokMSA_id:71002 AF357555 mpn-isolate group 7 
2.15.1.2.8.32231 OTU 2 seqs
prokMSA_id:33268 AJ408988 clone HuCB3
prokMSA_id:45060 AJ408965 clone HuCA9
2.15.1.2.8.3230 OTU 1 seq
prokMSA_id:18983 AJ400235 clone F2
2.15.1.2.8.32320 OTU 2 seqs
prokMSA_id:30861 AF319778 Bacteroides sp. 139 
prokMSA_id:46819 AF445205 Swine fecal FPC111 
2.15.1.2.8.32484 OTU 2 seqs
prokMSA_id:1988 X89217 Bacteroides sp. str. BV-1
prokMSA_id:50342 AJ409009 clone HuCA21
2.15.1.2.8.3369 OTU 1 seq
prokMSA_id:43091 AF132259 adhufec303 
2.15.1.2.8.3543 OTU 1 seq
prokMSA_id:28056 AF371908 clone p-194-o5 
2.15.1.2.8.3889 OTU 1 seq
prokMSA_id:26888 AF371907 clone p-218-o5 
2.15.1.2.8.39844 OTU 3 seqs
prokMSA_id:22971 AB050111 Bacteroides vulgatus 
prokMSA_id:28021 AF132256 adhufec27 
prokMSA_id:47165 AJ408990 clone HuCB6
2.15.1.2.8.42873 OTU 3 seqs
prokMSA_id:1992 AB021159 Bacteroides acidofaciens str. A24
prokMSA_id:1994 AB021161 Bacteroides acidofaciens str. A31
prokMSA_id:1998 AB021165 Bacteroides acidofaciens str. A43
2.15.1.2.8.5021 OTU 1 seq
prokMSA_id:73331 AF357553 mpn-isolate group 5 
2.15.1.2.8.5876 OTU 1 seq
prokMSA_id:2030 X83953 Bacteroides stercoris ATCC 43183
2.15.1.2.8.5882 OTU 1 seq
prokMSA_id:2036 AF001778 clone RFN2
2.15.1.2.8.5884 OTU 1 seq
prokMSA_id:2037 AB009202 clone RFN46
2.15.1.2.8.5901 OTU 1 seq
prokMSA_id:2044 AF018497 clone 12-129
2.15.1.2.8.5900 OTU 1 seq
prokMSA_id:2043 AF153869 clone adhufec26.25
2.15.1.2.8.5903 OTU 1 seq
prokMSA_id:2045 AB021157 Bacteroides acidofaciens
2.15.1.2.8.6524 OTU 1 seq
prokMSA_id:81335 AB100457 Bacteroidaceae clone: Rs-008
2.15.1.2.8.6594 OTU 1 seq
prokMSA_id:20534 AF371903 clone p-817-a5 
2.15.1.2.8.6699 OTU 1 seq
prokMSA_id:73517 AF385564 Prevotella sp. oral clone BU035 
2.15.1.2.8.7749 OTU 1 seq
prokMSA_id:73683 AY082449 Bacteroides sp. 253c 
2.15.1.2.8.7974 OTU 1 seq
prokMSA_id:52020 AJ408983 clone HuCA36
2.15.1.2.8.8013 OTU 1 seq
prokMSA_id:82138 AY217430 MTCE-T2 3G 
2.15.1.2.8.8203 OTU 1 seq
prokMSA_id:37022 AB050108 Bacteroides ovatus 
2.15.1.2.8.8337 OTU 1 seq
prokMSA_id:44276 AF132266 adhufec367 
2.15.1.2.8.8514 OTU 1 seq
prokMSA_id:73751 AY082451 Bacteroides sp. 265d 
2.15.1.2.8.8962 OTU 1 seq
prokMSA_id:22095 AB062847 clone:BCf9-17
2.15.1.2.9 PRV.TANNERAE_SUBGROUP 11 seqs
2.15.1.2.9.12612 OTU 1 seq
prokMSA_id:38227 AJ289170 E1-K15 
2.15.1.2.9.15137 OTU 1 seq
prokMSA_id:46419 AF371901 clone p-1939-s962-3 
2.15.1.2.9.32043 OTU 9 seqs
prokMSA_id:2046 AJ005634 Prevotella tannerae ATCC 51259
prokMSA_id:2047 U43699 str. PUS3.42
prokMSA_id:28563 AF183403 Prevotella tannerae strain 29-1 complete 
prokMSA_id:30384 AF183402 Prevotella tannerae strain 131-9-1 complete 
prokMSA_id:35980 AF183404 Prevotella tannerae strain 83-10-2 complete 
prokMSA_id:37055 AF183406 Prevotella tannerae strain 93-1-2 complete 
prokMSA_id:38368 AF183405 Prevotella tannerae strain 89-9-1 complete 
prokMSA_id:63115 AY093466 clone MB-A2-118 
prokMSA_id:72923 AJ289169 E1-K12 
2.15.1.2.10 PRV.BRYANTII_SUBGROUP 11 seqs
2.15.1.2.10.11152 OTU 1 seq
prokMSA_id:28970 AF371879 clone p-1849-c3 
2.15.1.2.10.15745 OTU 1 seq
prokMSA_id:47181 AF371883 clone p-1005-a5 
2.15.1.2.10.31405 OTU 2 seqs
prokMSA_id:2051 AF018460 clone 12-16
prokMSA_id:2052 AF018481 clone 12-102
2.15.1.2.10.3143 OTU 1 seq
prokMSA_id:49682 AF371886 clone p-219-o5 
2.15.1.2.10.32511 OTU 5 seqs
prokMSA_id:2049 AF001755 clone RF23
prokMSA_id:2050 AF018453 clone 12-4
prokMSA_id:23685 AB034106 rumen 5C3d-4 
prokMSA_id:39885 AB034107 rumen 3C3d-16 
prokMSA_id:52763 AB034105 rumen 5C3d-8 
2.15.1.2.10.3285 OTU 1 seq
prokMSA_id:42406 AF371884 clone p-185-o5 
2.15.1.2.11 PRV.RUMINICOLA_SUBGROUP 70 seqs
2.15.1.2.11.15943 OTU 1 seq
prokMSA_id:46597 AB034100 rumen 6C3d-16 
2.15.1.2.11.16707 OTU 1 seq
prokMSA_id:25004 AF371887 clone p-281-a3 
2.15.1.2.11.16871 OTU 1 seq
prokMSA_id:31669 AB034103 rumen 4C3d-5 
2.15.1.2.11.17273 OTU 1 seq
prokMSA_id:70217 AY028443 mpn-isolate group 2 
2.15.1.2.11.18131 OTU 1 seq
prokMSA_id:70362 AY005064 Prevotella sp. oral clone BI027 
2.15.1.2.11.18418 OTU 1 seq
prokMSA_id:17450 AB034104 rumen 4C3d-10 
2.15.1.2.11.19280 OTU 1 seq
prokMSA_id:69910 AF218619 Prevotella ruminicola strain TC2-28 
2.15.1.2.11.20564 OTU 1 seq
prokMSA_id:24907 AF371875 clone p-2190-s959-3 
2.15.1.2.11.21473 OTU 1 seq
prokMSA_id:48550 AF371876 clone p-819-a5 
2.15.1.2.11.24137 OTU 2 seqs
prokMSA_id:2127 AB009224 clone RFN76
prokMSA_id:2130 AB009239 clone RFN92
2.15.1.2.11.31223 OTU 5 seqs
prokMSA_id:2073 AB009184 clone RFN26
prokMSA_id:2076 AB009194 clone RFN38
prokMSA_id:2077 AB009206 clone RFN5
prokMSA_id:2082 AB009240 clone RFN93
prokMSA_id:2083 AB009241 clone RFN94
2.15.1.2.11.31605 OTU 2 seqs
prokMSA_id:2066 AF001731 clone RC29
prokMSA_id:2075 AB009192 clone RFN36
2.15.1.2.11.32099 OTU 3 seqs
prokMSA_id:2065 AF001729 clone RCP19
prokMSA_id:2096 AF018475 clone 12-66
prokMSA_id:18443 AB034101 rumen 3C3d-1 
2.15.1.2.11.34582 OTU 2 seqs
prokMSA_id:2116 AF001750 clone RF18
prokMSA_id:2123 AB009174 clone RFN15
2.15.1.2.11.34759 OTU 13 seqs
prokMSA_id:2064 AF001723 clone RC40
prokMSA_id:2071 AB004909 Prevotella ruminicola str. PF20-3
prokMSA_id:2078 AB009215 clone RFN68
prokMSA_id:2084 AB003384 Prevotella sp. str. sp24
prokMSA_id:2085 AB003385 Prevotella sp. str. sp34
prokMSA_id:2086 AB003386 Prevotella sp. str. sp28
prokMSA_id:2087 AB003387 Prevotella sp. str. sp158
prokMSA_id:2088 AB003388 Prevotella sp. str. sp20
prokMSA_id:2089 AB003401 Prevotella ruminicola str. T31
prokMSA_id:2090 AB003403 Prevotella ruminicola subsp. ruminicola
prokMSA_id:41037 AB034091 rumen 4C3d-18 
prokMSA_id:49294 AB034097 rumen 4C3d-1 
prokMSA_id:52673 AB034099 rumen 4C3d-15 
2.15.1.2.11.3592 OTU 1 seq
prokMSA_id:58157 AF544206 Rumen YS1 
2.15.1.2.11.42631 OTU 2 seqs
prokMSA_id:2067 AF001751 clone RF19
prokMSA_id:2070 AF001771 clone RF40
2.15.1.2.11.42635 OTU 2 seqs
prokMSA_id:2072 AB009180 clone RFN21
prokMSA_id:2079 AB009225 clone RFN78
2.15.1.2.11.543 OTU 1 seq
prokMSA_id:71561 AF371899 clone p-1864-s962-3 
2.15.1.2.11.5985 OTU 1 seq
prokMSA_id:2068 AF001757 clone RF25
2.15.1.2.11.5988 OTU 1 seq
prokMSA_id:2069 AF001768 clone RF37
2.15.1.2.11.6025 OTU 1 seq
prokMSA_id:2074 AB009187 clone RFN29
2.15.1.2.11.6061 OTU 1 seq
prokMSA_id:2080 AB009235 clone RFN89
2.15.1.2.11.6064 OTU 1 seq
prokMSA_id:2081 AB009237 clone RFN90
2.15.1.2.11.6106 OTU 1 seq
prokMSA_id:2093 AF018450 clone JW31
2.15.1.2.11.6108 OTU 1 seq
prokMSA_id:2095 AF018468 clone 12-50
2.15.1.2.11.6112 OTU 1 seq
prokMSA_id:2098 AF018496 clone 12-127
2.15.1.2.11.6113 OTU 1 seq
prokMSA_id:2099 AF018499 clone 12-132
2.15.1.2.11.6646 OTU 1 seq
prokMSA_id:2112 AF001703 clone RC11
2.15.1.2.11.6647 OTU 1 seq
prokMSA_id:2113 AF001705 clone RC14
2.15.1.2.11.6650 OTU 1 seq
prokMSA_id:2115 AF001714 clone RC24
2.15.1.2.11.6656 OTU 1 seq
prokMSA_id:2117 AF001752 clone RF20
2.15.1.2.11.6658 OTU 1 seq
prokMSA_id:2118 AF001759 clone RF27
2.15.1.2.11.6683 OTU 1 seq
prokMSA_id:2120 AF001773 clone RFP6
2.15.1.2.11.6684 OTU 1 seq
prokMSA_id:2121 AF001777 clone RFN1
2.15.1.2.11.6688 OTU 1 seq
prokMSA_id:2125 AB009196 clone RFN40
2.15.1.2.11.6691 OTU 1 seq
prokMSA_id:2126 AB009223 clone RFN75
2.15.1.2.11.6697 OTU 1 seq
prokMSA_id:2128 AB009236 clone RFN9
2.15.1.2.11.6698 OTU 1 seq
prokMSA_id:2129 AB009238 clone RFN91
2.15.1.2.11.6721 OTU 1 seq
prokMSA_id:2132 AF018440 clone JW7
2.15.1.2.11.6728 OTU 1 seq
prokMSA_id:2135 AF018446 clone JW17
2.15.1.2.11.6735 OTU 1 seq
prokMSA_id:2137 AF018458 clone 12-12
2.15.1.2.11.6760 OTU 1 seq
prokMSA_id:2140 AF018469 clone 12-51
2.15.1.2.11.6770 OTU 1 seq
prokMSA_id:2148 AF018498 clone 12-130
2.15.1.2.11.6869 OTU 1 seq
prokMSA_id:2170 AJ009933 Prevotella aff. ruminicola Tc2-24 str. Tc2-24
2.15.1.2.11.7570 OTU 1 seq
prokMSA_id:43544 AF371873 clone p-2181-s959-3 
2.15.1.2.11.9178 OTU 1 seq
prokMSA_id:43707 AB034102 rumen 6C3d-25 
2.15.1.2.12 PRV.BUCCAE_SUBGROUP 14 seqs
2.15.1.2.12.11800 OTU 1 seq
prokMSA_id:36896 AY005061 Prevotella sp. oral strain B31FD 
2.15.1.2.12.11974 OTU 1 seq
prokMSA_id:22466 AF371872 clone p-1297-a5 
2.15.1.2.12.12707 OTU 1 seq
prokMSA_id:68339 AF481227 Prevotella sp. E9_34 E2 oral isolate 
2.15.1.2.12.12824 OTU 1 seq
prokMSA_id:38278 AJ400267 clone F8
2.15.1.2.12.14178 OTU 1 seq
prokMSA_id:76393 AY158021 Prevotella sp. RS2 
2.15.1.2.12.15851 OTU 1 seq
prokMSA_id:46566 AF371878 clone p-863-a5 
2.15.1.2.12.25804 OTU 2 seqs
prokMSA_id:2176 X81876 Prevotella dentalis str. ES2645 DSM 3688
prokMSA_id:2177 X81877 Hallella seregens ATCC 51272
2.15.1.2.12.2972 OTU 1 seq
prokMSA_id:26715 AJ315483 isolate HuCC28
2.15.1.2.12.4194 OTU 1 seq
prokMSA_id:73255 AY005063 Prevotella sp. oral clone CY006 
2.15.1.2.12.6870 OTU 1 seq
prokMSA_id:2172 AF001708 clone RC17
2.15.1.2.12.6874 OTU 1 seq
prokMSA_id:2174 AB009191 clone RFN35
2.15.1.2.12.6912 OTU 1 seq
prokMSA_id:2181 AJ005635 Prevotella enoeca ATCC 51261
2.15.1.2.12.6992 OTU 1 seq
prokMSA_id:28413 AF371877 clone p-1310-a5 
2.15.1.2.13 PRV.NIGRESCENS_SUBGROUP 89 seqs
2.15.1.2.13.12462 OTU 1 seq
prokMSA_id:46017 AF371882 clone p-408-o3 
2.15.1.2.13.13820 OTU 1 seq
prokMSA_id:29968 AF432133 Prevotella sp. oral clone FM005 
2.15.1.2.13.141 OTU 1 seq
prokMSA_id:55854 AF481226 Prevotella sp. E7_34 E1 oral isolate 
2.15.1.2.13.14403 OTU 1 seq
prokMSA_id:31240 AF371881 clone p-2173-s959-3 
2.15.1.2.13.15319 OTU 1 seq
prokMSA_id:22951 AY005062 Prevotella sp. oral clone AU069 
2.15.1.2.13.15633 OTU 1 seq
prokMSA_id:47101 AF385519 Prevotella sp. oral clone DO022 
2.15.1.2.13.16044 OTU 1 seq
prokMSA_id:68838 AF371885 clone p-394-o3 
2.15.1.2.13.16251 OTU 1 seq
prokMSA_id:17164 AB078830 Bacteroidales str. KB10 
2.15.1.2.13.16358 OTU 1 seq
prokMSA_id:16549 AF371874 clone p-1031-a5 
2.15.1.2.13.18026 OTU 1 seq
prokMSA_id:33010 AF371880 clone p-2407-55G5 
2.15.1.2.13.18085 OTU 1 seq
prokMSA_id:63123 AY093462 clone MB-A2-107 
2.15.1.2.13.18669 OTU 1 seq
prokMSA_id:69843 AB081578 Bacteroidaceae str. A42 
2.15.1.2.13.19274 OTU 1 seq
prokMSA_id:71102 AY005053 Prevotella sp. oral clone AH005 
2.15.1.2.13.19643 OTU 1 seq
prokMSA_id:18221 AB034108 rumen 4C3d-6 
2.15.1.2.13.1996 OTU 1 seq
prokMSA_id:71701 AF357576 mpn-isolate group 3 
2.15.1.2.13.2017 OTU 1 seq
prokMSA_id:71710 AF371898 clone p-993-s962-5 
2.15.1.2.13.20338 OTU 1 seq
prokMSA_id:70671 AF385509 Prevotella sp. oral clone DO014 
2.15.1.2.13.20461 OTU 1 seq
prokMSA_id:26182 AB034044 rumen 5C0d-11 
2.15.1.2.13.25389 OTU 2 seqs
prokMSA_id:2200 AJ011683 Prevotella albensis str. M384 DSM 11370
prokMSA_id:2216 AF040719 Prevotella RZ str. RZ
2.15.1.2.13.25495 OTU 2 seqs
prokMSA_id:2208 AF018486 clone 12-109
prokMSA_id:36773 AB034149 rumen 4C28d-23 
2.15.1.2.13.26770 OTU 12 seqs
prokMSA_id:2197 X73965 Prevotella intermedia str. B422 S.Finegold ATCC 25611
prokMSA_id:17066 AF414828 Prevotella intermedia strain 15-PIN 
prokMSA_id:18327 AF414825 Prevotella intermedia strain 35-PIN 
prokMSA_id:25390 AF414829 Prevotella intermedia strain 16-PIN 
prokMSA_id:28131 AF414824 Prevotella intermedia strain 32-PIN 
prokMSA_id:45410 AF414827 Prevotella intermedia strain 10-PIN 
prokMSA_id:70556 AF414831 Prevotella intermedia strain 23-PIN 
prokMSA_id:70907 AF414822 Prevotella intermedia strain 5-PIN 
prokMSA_id:70996 AF414832 Prevotella intermedia strain 24-PIN 
prokMSA_id:72550 AF414823 Prevotella intermedia strain 6-PIN 
prokMSA_id:73101 AF414826 Prevotella intermedia strain 36-PIN 
prokMSA_id:74076 AF414830 Prevotella intermedia strain 22-PIN 
2.15.1.2.13.28652 OTU 2 seqs
prokMSA_id:29831 AB078827 Bacteroidales str. KB7 
prokMSA_id:30361 AB078832 Bacteroidales str. KB12 
2.15.1.2.13.30026 OTU 2 seqs
prokMSA_id:45491 AB078831 Bacteroidales str. KB11 
prokMSA_id:50178 AB078833 Bacteroidales str. KB13 
2.15.1.2.13.31975 OTU 2 seqs
prokMSA_id:2224 U43698 str. PUS3.3
prokMSA_id:45107 AY005056 Prevotella sp. oral clone F045 
2.15.1.2.13.32039 OTU 4 seqs
prokMSA_id:2191 AF018455 clone 12-7
prokMSA_id:2205 AF018478 clone 12-71
prokMSA_id:2207 AF018484 clone 12-106
prokMSA_id:2209 AF018489 clone 12-114
2.15.1.2.13.32821 OTU 9 seqs
prokMSA_id:2189 AF153867 clone adhufec61.25
prokMSA_id:2190 AF153866 clone adhufec41.25
prokMSA_id:29272 AF132282 adhufec94 
prokMSA_id:33062 AB050850 CA75 
prokMSA_id:36894 AF371891 clone p-1029-a5 
prokMSA_id:38507 AF371890 clone p-1980-s959-5 
prokMSA_id:42963 AF132272 adhufec43 
prokMSA_id:44821 AF371892 clone p-2517-18B5 
prokMSA_id:48738 AY028442 mpn-isolate group 1 
2.15.1.2.13.32926 OTU 2 seqs
prokMSA_id:39852 AF371897 clone p-3951-23G5 
prokMSA_id:45329 AF357552 mpn-isolate group 4 
2.15.1.2.13.33023 OTU 13 seqs
prokMSA_id:2198 X73963 Prevotella nigrescens str. Lambe 729-74 NCTC 9336
prokMSA_id:34082 AJ289187 E1-K11 
prokMSA_id:35662 AF414834 Prevotella nigrescens strain 7-PNIG 
prokMSA_id:52068 AF414838 Prevotella nigrescens strain 37-PNIG 
prokMSA_id:70423 AF414841 Prevotella nigrescens strain 17-PNIG 
prokMSA_id:70986 AF414839 Prevotella nigrescens strain 11-PNIG 
prokMSA_id:71190 AF414837 Prevotella nigrescens strain 31-PNIG 
prokMSA_id:71240 AF414836 Prevotella nigrescens strain 9-PNIG 
prokMSA_id:71569 AF414840 Prevotella nigrescens strain 13-PNIG 
prokMSA_id:72329 AF414835 Prevotella nigrescens strain 8-PNIG 
prokMSA_id:73458 AF414843 Prevotella nigrescens strain 20-PNIG 
prokMSA_id:73473 AF414833 Prevotella nigrescens strain ATCC 33563 
prokMSA_id:73933 AF414842 Prevotella nigrescens strain 18-PNIG 
2.15.1.2.13.34295 OTU 2 seqs
prokMSA_id:73666 AF218617 Prevotella ruminicola strain TC2-3 
prokMSA_id:73671 AF218618 Prevotella ruminicola strain 223/M2/7 
2.15.1.2.13.3493 OTU 1 seq
prokMSA_id:71907 AY134905 Prevotella sp. oral clone FX046 
2.15.1.2.13.3532 OTU 1 seq
prokMSA_id:71918 AF385554 Prevotella sp. oral clone BR014 
2.15.1.2.13.3589 OTU 1 seq
prokMSA_id:72590 AF385512 Prevotella sp. oral clone DO033 
2.15.1.2.13.375 OTU 1 seq
prokMSA_id:72142 AF132249 adhufec235 
2.15.1.2.13.4814 OTU 1 seq
prokMSA_id:51061 AJ289182 E1-K13 
2.15.1.2.13.4996 OTU 1 seq
prokMSA_id:73324 AF385515 Prevotella sp. oral clone DO045 
2.15.1.2.13.5035 OTU 1 seq
prokMSA_id:36031 AF371894 clone p-3779-23G3 
2.15.1.2.13.5145 OTU 1 seq
prokMSA_id:35402 AF385551 Prevotella sp. oral clone BE073 
2.15.1.2.13.5378 OTU 1 seq
prokMSA_id:72779 AF385511 Prevotella sp. oral clone DO027 
2.15.1.2.13.6926 OTU 1 seq
prokMSA_id:2188 L16473 Prevotella veroralis ATCC 33779
2.15.1.2.13.6954 OTU 1 seq
prokMSA_id:2193 L16483 Prevotella disiens ATCC 29426
2.15.1.2.13.7034 OTU 1 seq
prokMSA_id:72964 AY005054 Prevotella sp. oral clone AO036 
2.15.1.2.13.7420 OTU 1 seq
prokMSA_id:2201 AB009211 clone RFN64
2.15.1.2.13.7426 OTU 1 seq
prokMSA_id:2206 AF018483 clone 12-104
2.15.1.2.13.7547 OTU 1 seq
prokMSA_id:74280 AF366269 Prevotella sp. clone DG059 
2.15.1.2.13.843 OTU 1 seq
prokMSA_id:26496 AF371893 clone p-2443-18B5 
2.15.1.2.13.8518 OTU 1 seq
prokMSA_id:73752 AY005057 Prevotella sp. oral clone AA020 
2.15.1.2.13.9025 OTU 1 seq
prokMSA_id:74407 AY005065 Prevotella sp. oral clone DA058 
2.15.1.2.13.9221 OTU 1 seq
prokMSA_id:50936 AB078825 Bacteroidales str. KB1 
2.15.1.3 CYTOPHAGA_GROUP_I 331 seqs
2.15.1.3.2 MSC.AGGREGANS_SUBGROUP 3 seqs
2.15.1.3.2.6595 OTU 1 seq
prokMSA_id:80707 AF449770 CFB group clone ML310M-46 
2.15.1.3.2.7899 OTU 1 seq
prokMSA_id:58645 AB078042 Flexibacter aggregans subsp. catalaticus strain:IFO 15977
2.15.1.3.2.945 OTU 1 seq
prokMSA_id:49398 AF314421 PHOS-HE28 
2.15.1.3.3 BLT.SP_SUBGROUP 54 seqs
2.15.1.3.3.25911 OTU 3 seqs
prokMSA_id:24514 AF363715 Blattabacterium relictus 
prokMSA_id:36262 AF322473 Blattabacterium sp. Cryptocercus relictus 
prokMSA_id:43163 AF310163 Blattabacterium sp. Cryptocercus relictus 
2.15.1.3.3.26501 OTU 2 seqs
prokMSA_id:2233 X75625 Blattabacterium sp
prokMSA_id:2234 X75624 Blattabacterium sp
2.15.1.3.3.35377 OTU 42 seqs
prokMSA_id:2235 Z35664 Blattabacterium sp
prokMSA_id:16690 AF363711 Blattabacterium punctulatus 
prokMSA_id:16942 AF363693 Blattabacterium punctulatus 
prokMSA_id:18153 AF322465 Blattabacterium sp. Cryptocercus darwini isolate Cumberland 
prokMSA_id:18551 AF363705 Blattabacterium punctulatus 
prokMSA_id:18626 AF322467 Blattabacterium sp. Cryptocercus wrighti isolate Bear 
prokMSA_id:20670 AF322462 Blattabacterium sp. Cryptocercus darwini isolate Cheaha 
prokMSA_id:21143 AF363691 Blattabacterium punctulatus 
prokMSA_id:21150 AF363704 Blattabacterium punctulatus 
prokMSA_id:24181 AF363712 Blattabacterium punctulatus 
prokMSA_id:24849 AF310162 Blattabacterium sp. Cryptocercus clevelandi 
prokMSA_id:24910 AF363702 Blattabacterium punctulatus 
prokMSA_id:24997 AF363694 Blattabacterium punctulatus 
prokMSA_id:25301 AF322468 Blattabacterium sp. Cryptocercus wrighti isolate Little 
prokMSA_id:27730 AF322471 Blattabacterium sp. Cryptocercus punctulatus isolate Mountai
prokMSA_id:27731 AF322466 Blattabacterium sp. Cryptocercus wrighti isolate Asheville 
prokMSA_id:29432 AF363708 Blattabacterium punctulatus 
prokMSA_id:30774 AF322463 Blattabacterium sp. Cryptocercus darwini isolate DeSoto 
prokMSA_id:31782 AF363695 Blattabacterium punctulatus 
prokMSA_id:32119 AF363710 Blattabacterium punctulatus 
prokMSA_id:33549 AF322459 Blattabacterium sp. Cryptocercus garciai isolate Cherry 
prokMSA_id:33965 AF322470 Blattabacterium sp. Cryptocercus punctulatus isolate Mononga
prokMSA_id:35136 AF363701 Blattabacterium punctulatus 
prokMSA_id:35277 AF363713 Blattabacterium punctulatus 
prokMSA_id:35615 AF363700 Blattabacterium punctulatus 
prokMSA_id:37019 AF322469 Blattabacterium sp. Cryptocercus wrighti 
prokMSA_id:37689 AF363696 Blattabacterium punctulatus 
prokMSA_id:38143 AF322464 Blattabacterium sp. Cryptocercus darwini isolate Daniel 
prokMSA_id:39069 AF322461 Blattabacterium sp. Cryptocercus darwini isolate Buck 
prokMSA_id:40883 AF322472 Blattabacterium sp. Cryptocercus clevelandi 
prokMSA_id:40895 AF363707 Blattabacterium punctulatus 
prokMSA_id:42526 AF322458 Blattabacterium sp. Cryptocercus garciai isolate Vogel 
prokMSA_id:42631 AF363692 Blattabacterium punctulatus 
prokMSA_id:43084 AF322460 Blattabacterium sp. Cryptocercus garciai isolate Highway 
prokMSA_id:43690 AF363703 Blattabacterium punctulatus 
prokMSA_id:48742 AF363714 Blattabacterium clevelandi 
prokMSA_id:49951 AF363697 Blattabacterium punctulatus 
prokMSA_id:50133 AF363698 Blattabacterium punctulatus 
prokMSA_id:50389 AF363709 Blattabacterium punctulatus 
prokMSA_id:50894 AF363699 Blattabacterium punctulatus 
prokMSA_id:52027 AF310161 Blattabacterium sp. Cryptocercus punctulatus 
prokMSA_id:74844 AF363706 Blattabacterium punctulatus 
2.15.1.3.3.7546 OTU 1 seq
prokMSA_id:2236 X96730 Blattabacterium sp
2.15.1.3.3.7549 OTU 1 seq
prokMSA_id:2237 Z35665 endosymbiont of Mastotermes darwiniensis
2.15.1.3.3.7552 OTU 1 seq
prokMSA_id:2238 X75626 Blattabacterium sp
2.15.1.3.3.7556 OTU 1 seq
prokMSA_id:2239 Z35666 Blattabacterium sp
2.15.1.3.3.7579 OTU 1 seq
prokMSA_id:2241 AJ009687 Flavobacterium sp
2.15.1.3.3.7578 OTU 1 seq
prokMSA_id:2240 Y13889 unnamed organism
2.15.1.3.3.7584 OTU 1 seq
prokMSA_id:2243 X75622 Blattabacterium sp
2.15.1.3.4 EMB.BREVIS_SUBGROUP 12 seqs
2.15.1.3.4.10219 OTU 1 seq
prokMSA_id:43899 AJ318144 Bacteroidetes clone BIhii40
2.15.1.3.4.11134 OTU 1 seq
prokMSA_id:28957 AJ318191 Bacteroidetes clone BIui38
2.15.1.3.4.18599 OTU 1 seq
prokMSA_id:69811 AF521195 Brumimicrobium glaciale 
2.15.1.3.4.26631 OTU 7 seqs
prokMSA_id:2247 U87100 Ornithobacterium rhinotracheale str. D95-36425
prokMSA_id:2248 U87101 Ornithobacterium rhinotracheale LMG 9086
prokMSA_id:2249 U87102 Ornithobacterium rhinotracheale LMG 11553
prokMSA_id:2250 U87103 Ornithobacterium rhinotracheale LMG 15870
prokMSA_id:2251 U87104 Ornithobacterium rhinotracheale LMG 11554
prokMSA_id:2252 U87105 Ornithobacterium rhinotracheale LMG 14578
prokMSA_id:2253 U87106 Ornithobacterium rhinotracheale LMG 11551
2.15.1.3.4.5177 OTU 1 seq
prokMSA_id:73378 AF289153 Cytophagales clone PRD01a005B 
2.15.1.3.4.7625 OTU 1 seq
prokMSA_id:2255 AF087043 clone BA2
2.15.1.3.5 CSB.MENINGOSEPTICUM_SUBGROUP 10 seqs
2.15.1.3.5.12640 OTU 1 seq
prokMSA_id:45458 AF207079 Chryseobacterium meningosepticum GEO 
2.15.1.3.5.2323 OTU 1 seq
prokMSA_id:26642 AJ318119 clone BIfcii29
2.15.1.3.5.33925 OTU 7 seqs
prokMSA_id:24059 AF207070 Chryseobacterium meningosepticum PINT 
prokMSA_id:26365 AF207074 Chryseobacterium meningosepticum CIP 79.5 
prokMSA_id:35949 AF207072 Chryseobacterium meningosepticum CIP 6059 
prokMSA_id:36392 AF207071 Chryseobacterium meningosepticum CIP 6058 
prokMSA_id:38477 AF207078 Chryseobacterium meningosepticum AMA 
prokMSA_id:45371 AF207077 Chryseobacterium meningosepticum HO1J100 
prokMSA_id:59466 AB071953 Chryseobacterium mirecola 
2.15.1.3.5.7986 OTU 1 seq
prokMSA_id:27969 AF207075 Chryseobacterium meningosepticum CIP 6057 
2.15.1.3.6 CSB.BALUSTINUM_SUBGROUP 34 seqs
2.15.1.3.6.10202 OTU 1 seq
prokMSA_id:59536 AF538774 Enrichment culture LB-Q clone LB-Q 
2.15.1.3.6.11238 OTU 1 seq
prokMSA_id:75303 AY157745 Chryseobacterium sp. kr6 
2.15.1.3.6.1409 OTU 1 seq
prokMSA_id:19303 AJ271010 Chryseobacterium joosteii strain LMG 18212
2.15.1.3.6.15478 OTU 1 seq
prokMSA_id:45877 AB035150 Haloanella gallinarum complete 
2.15.1.3.6.15711 OTU 1 seq
prokMSA_id:17076 AY050493 Chryseobacterium indologenes SB1 
2.15.1.3.6.16393 OTU 1 seq
prokMSA_id:46641 AF344179 Flavobacterium sp. cpw707 
2.15.1.3.6.18616 OTU 1 seq
prokMSA_id:77694 AB074613 CFB group clone:APe2_9
2.15.1.3.6.18940 OTU 1 seq
prokMSA_id:32560 AF217562 Chryseobacterium sp. FR2 complete 
2.15.1.3.6.19637 OTU 1 seq
prokMSA_id:56180 AF532186 Trichloroacetic-acid-degrading TCAA1 
2.15.1.3.6.20382 OTU 1 seq
prokMSA_id:63469 AJ495802 Chryseobacterium sp. p20H 
2.15.1.3.6.21403 OTU 1 seq
prokMSA_id:32882 AB024308 Flavobacteriaceae str. 2 
2.15.1.3.6.21841 OTU 1 seq
prokMSA_id:63613 AY043370 Chryseobacterium sp. AU939 
2.15.1.3.6.2728 OTU 1 seq
prokMSA_id:72435 AF385544 Flavobacterium-like sp. oral clone AY017 
2.15.1.3.6.30238 OTU 2 seqs
prokMSA_id:19452 X85207 Unknown organism 1863 strain F006
prokMSA_id:21236 X85208 Unknown organism 1863 strain F006C
2.15.1.3.6.30969 OTU 2 seqs
prokMSA_id:27522 AF414115 Flavobacteriaceae NML no.97-0007 
prokMSA_id:31516 AF414116 Flavobacteriaceae NML no.99-0049 
2.15.1.3.6.33065 OTU 4 seqs
prokMSA_id:2261 U60101 Riemerella anatipestifer ATCC 11845
prokMSA_id:22221 AF118416 Riemerella anatipestifer strain 4005 
prokMSA_id:24404 AF118418 Riemerella anatipestifer strain 4280 
prokMSA_id:47818 U60104 Riemerella anatipestifer serotype 19 strain 30/90 
2.15.1.3.6.3477 OTU 1 seq
prokMSA_id:71901 AY008691 Bergeyella sp. oral clone AK152 
2.15.1.3.6.35007 OTU 2 seqs
prokMSA_id:60999 AF531766 Flavobacteriaceae 90B 
prokMSA_id:78016 AB074611 CFB group clone:APe4_42
2.15.1.3.6.41455 OTU 2 seqs
prokMSA_id:67365 AJ457206 Chryseobacterium sp. CPW406 
prokMSA_id:67485 AF493696 Flavobacteriaceae str. EP105 
2.15.1.3.6.42582 OTU 3 seqs
prokMSA_id:59359 AF502204 clone HP1B06 
prokMSA_id:59361 AF502203 clone HP1A43 
prokMSA_id:62966 AF527584 clone LPB28 
2.15.1.3.6.42804 OTU 2 seqs
prokMSA_id:75752 AJ519403 flavobacterium sp. clone JG37-AG-16
prokMSA_id:82260 BD175053 Slime control method in paper making step of neutral paper m
2.15.1.3.6.456 OTU 1 seq
prokMSA_id:71527 AJ309324 Chryseobacterium defluvium isolate B2
2.15.1.3.6.5577 OTU 1 seq
prokMSA_id:21005 AB039830 Chryseobacterium proteolyticum 
2.15.1.3.6.7669 OTU 1 seq
prokMSA_id:2269 AF181448 Riemerella columbina LMG 11607
2.15.1.3.9 MY.ODORATUS_SUBGROUP 2 seqs
2.15.1.3.9.27942 OTU 2 seqs
prokMSA_id:2285 AJ223455 str. SS2
prokMSA_id:2286 AJ223454 str. SS1
2.15.1.3.10 F.FLEVENSE_SUBGROUP 16 seqs
2.15.1.3.10.18363 OTU 1 seq
prokMSA_id:77602 AB074609 CFB group clone:APe4_4
2.15.1.3.10.20610 OTU 1 seq
prokMSA_id:55662 AF493652 Flavobacterium sp. EP134 
2.15.1.3.10.40296 OTU 6 seqs
prokMSA_id:67568 AF493667 Flavobacterium sp. EP360 
prokMSA_id:69817 AF493662 Flavobacterium sp. EP300 
prokMSA_id:70214 AF493644 Flavobacterium sp. EP241 
prokMSA_id:71583 AF493656 Flavobacterium sp. EP204 
prokMSA_id:71925 AF493635 Flavobacterium sp. EP030 
prokMSA_id:73277 AF493661 Flavobacterium sp. EP286 
2.15.1.3.10.40365 OTU 3 seqs
prokMSA_id:27830 AF366582 Acanthamoeba sp. KHLA1 
prokMSA_id:69855 AF493638 Flavobacterium sp. EP209 
prokMSA_id:69915 AF493658 Flavobacterium sp. EP217 
2.15.1.3.10.5552 OTU 1 seq
prokMSA_id:57760 AY154890 Flavobacterium sp. BR1 
2.15.1.3.10.6664 OTU 1 seq
prokMSA_id:73509 AF493664 Flavobacterium sp. EP333 
2.15.1.3.10.7755 OTU 1 seq
prokMSA_id:2299 AF090991 Flavobacterium psychrophilum ATCC 49418
2.15.1.3.10.8343 OTU 1 seq
prokMSA_id:2314 AF170749 str. QSSC9-3
2.15.1.3.10.9657 OTU 1 seq
prokMSA_id:75119 AY163576 Croceibacter atlanticus strain HTCC2559T 
2.15.1.3.11 FLX.MARITIMUS_SUBGROUP 41 seqs
2.15.1.3.11.12771 OTU 1 seq
prokMSA_id:45481 AB032505 Tenacibaculum amylolyticum strain:MBIC4355
2.15.1.3.11.13076 OTU 1 seq
prokMSA_id:61125 AF530136 Tenacibaculum sp. MGP-10 
2.15.1.3.11.14766 OTU 1 seq
prokMSA_id:22873 AF469612 Tenacibaculum cellulophagum strain D30 
2.15.1.3.11.17585 OTU 1 seq
prokMSA_id:61850 AF449259 CFB group clone R103-B20 
2.15.1.3.11.17999 OTU 1 seq
prokMSA_id:39685 AB039966 Marine gliding UWA-1 
2.15.1.3.11.18275 OTU 1 seq
prokMSA_id:78228 AJ535222 Cytophagales clone Hyd24-2-2
2.15.1.3.11.18564 OTU 1 seq
prokMSA_id:77676 AJ535225 Cytophagales clone Hyd24-41
2.15.1.3.11.24103 OTU 6 seqs
prokMSA_id:16735 AY006470 Flexibacter echinicida strain F11 
prokMSA_id:20667 AY006466 Flexibacter echinicida strain F2 
prokMSA_id:24882 AY006471 Flexibacter echinicida strain F12 
prokMSA_id:36219 AY006469 Flexibacter echinicida strain F9 
prokMSA_id:40106 AY006467 Flexibacter echinicida strain F4 
prokMSA_id:45622 AY006468 Flexibacter echinicida strain F8 
2.15.1.3.11.24781 OTU 4 seqs
prokMSA_id:22718 AB032504 Tenacibaculum mesophilum strain:MBIC4357
prokMSA_id:31105 AB032501 Tenacibaculum mesophilum strain:MBIC1140
prokMSA_id:44581 AB032502 Tenacibaculum mesophilum strain:MBIC1543
prokMSA_id:52498 AB032503 Tenacibaculum mesophilum strain:MBIC4356
2.15.1.3.11.35049 OTU 17 seqs
prokMSA_id:2352 U14586 Polaribacter franzmannii str. 301
prokMSA_id:2355 U85885 Polaribacter IC063 str. IC063
prokMSA_id:2356 U85884 Polaribacter IC066 str. IC066
prokMSA_id:2357 U73726 Polaribacter filamentus str. 215
prokMSA_id:44604 AJ400343 marine ZD0255 
prokMSA_id:61127 AF530135 Polaribacter sp. MGP-9 
prokMSA_id:67335 AF493674 Polaribacter sp. SW007 
prokMSA_id:70110 AF359539 Marine ATAM173a_2 
prokMSA_id:79136 AY189722 Bacteroidetes KMM 3938 
prokMSA_id:80368 AF468415 Arctic sea ice associated ARK10124 
prokMSA_id:80402 AY198117 Polaribacter sp. HLE 
prokMSA_id:80621 AF468413 Arctic sea ice ARK10105 
prokMSA_id:81099 AY167314 Polaribacter irgensii strain ANT9044 
prokMSA_id:81422 AY167325 Polaribacter irgensii strain ANT9243 
prokMSA_id:81705 AY165582 Antarctic sea ice clone ANTXI/4_14-12 
prokMSA_id:81910 AY165580 Antarctic sea ice clone ANTXI/4_14-37 
prokMSA_id:81957 AY167317 Polaribacter irgensii strain ANT9210 
2.15.1.3.11.41504 OTU 3 seqs
prokMSA_id:67328 AF493677 Tenacibaculum sp. SW258 
prokMSA_id:70449 AF493678 Tenacibaculum sp. SW274 
prokMSA_id:73960 AF530150 Tenacibaculum sp. MGP-74/AN6 
2.15.1.3.11.7874 OTU 1 seq
prokMSA_id:58630 AB078057 Tenacibaculum maritimum strain:IFO 15946
2.15.1.3.11.7897 OTU 1 seq
prokMSA_id:58642 AB078044 Flexibacter aurantiacus subsp. copepodarum strain:IFO 15978
2.15.1.3.11.8487 OTU 1 seq
prokMSA_id:2359 AB015261 Cytophaga sp. str. JTB143
2.15.1.3.11.8510 OTU 1 seq
prokMSA_id:2362 L10947 marine snow associated clone agg50
2.15.1.3.12 CAP.OCHRACEA_SUBGROUP 30 seqs
2.15.1.3.12.19500 OTU 1 seq
prokMSA_id:70542 AF366270 Capnocytophaga sp. clone DS022 
2.15.1.3.12.20221 OTU 1 seq
prokMSA_id:70616 AY005076 Capnocytophaga sp. oral clone BB167 
2.15.1.3.12.20274 OTU 1 seq
prokMSA_id:56208 AF543293 Capnocytophaga sp. ChDC OS43 
2.15.1.3.12.28970 OTU 2 seqs
prokMSA_id:2367 U42010 Capnocytophaga sp. str. S3
prokMSA_id:37716 AY005073 Capnocytophaga sp. oral strain S3 
2.15.1.3.12.33359 OTU 2 seqs
prokMSA_id:23229 AF385569 Capnocytophaga sp. oral clone BU084 
prokMSA_id:73111 AY134894 Capnocytophaga sp. oral clone BR085 
2.15.1.3.12.34556 OTU 2 seqs
prokMSA_id:2373 X67609 Capnocytophaga sputigena ATCC 33612
prokMSA_id:2374 AF133536 Capnocytophaga sputigena str. 897 CIP 100
2.15.1.3.12.34560 OTU 7 seqs
prokMSA_id:2363 U41350 Capnocytophaga ochracea ATCC 27872
prokMSA_id:26200 AY005078 Capnocytophaga sp. oral clone X066 
prokMSA_id:29194 AY005080 Capnocytophaga sp. oral clone X089 
prokMSA_id:39124 AY005079 Capnocytophaga sp. oral clone AA032 
prokMSA_id:56144 AF543298 Capnocytophaga ochracea strain ChDC OS48 
prokMSA_id:58284 AF543292 Capnocytophaga ochracea strain ChDC OS42 
prokMSA_id:59534 AF538853 Capnocytophaga sp. oral strain P4G_35 P4 
2.15.1.3.12.35213 OTU 3 seqs
prokMSA_id:2366 U41347 Capnocytophaga granulosa LMG 16022
prokMSA_id:2368 X97248 Capnocytophaga granulosa ATCC 51502
prokMSA_id:70530 AY005074 Capnocytophaga sp. oral clone AH015 
2.15.1.3.12.3669 OTU 1 seq
prokMSA_id:71957 AF385494 Capnocytophaga sp. oral clone DZ074 
2.15.1.3.12.4601 OTU 1 seq
prokMSA_id:58282 AF543295 Capnocytophaga gingivalis 
2.15.1.3.12.4605 OTU 1 seq
prokMSA_id:58285 AF543294 Capnocytophaga sp. ChDC OS44 
2.15.1.3.12.8516 OTU 1 seq
prokMSA_id:2365 X97245 Capnocytophaga cynodegmi ATCC 49044
2.15.1.3.12.8555 OTU 1 seq
prokMSA_id:2370 X67610 Capnocytophaga ochracea str. 25 ATCC 33596
2.15.1.3.12.8566 OTU 1 seq
prokMSA_id:2377 U41348 Capnocytophaga granulosa LMG 12119
2.15.1.3.12.8591 OTU 1 seq
prokMSA_id:2382 X67608 Capnocytophaga gingivalis ATCC 33624
2.15.1.3.12.8604 OTU 1 seq
prokMSA_id:2386 L14639 Capnocytophaga gingivalis ATCC 33624
2.15.1.3.12.8624 OTU 1 seq
prokMSA_id:2390 X97247 Capnocytophaga haemolytica ATCC 51501
2.15.1.3.12.8630 OTU 1 seq
prokMSA_id:2392 X97246 Capnocytophaga canimorsus str. CalHlthDept 2340-2-61 ATCC 35
2.15.1.3.12.9229 OTU 1 seq
prokMSA_id:73803 AY008312 Capnocytophaga sp. oral clone EL043 
2.15.1.3.13 CY.ULIGINOSA_SUBGROUP 40 seqs
2.15.1.3.13.11066 OTU 1 seq
prokMSA_id:36799 AY035869 Cellulophaga sp. ACEM20 
2.15.1.3.13.11921 OTU 1 seq
prokMSA_id:45309 AF359541 Marine ATAM173a_6 
2.15.1.3.13.13075 OTU 1 seq
prokMSA_id:61123 AF530137 Zobellia sp. MGP-14 
2.15.1.3.13.13942 OTU 1 seq
prokMSA_id:39004 AF052742 Arenibacter latericius KMM 426T 
2.15.1.3.13.15776 OTU 1 seq
prokMSA_id:76628 AF550590 Bacteroidetes Ko706 
2.15.1.3.13.17351 OTU 1 seq
prokMSA_id:70274 AF208293 Zobellia galactanovora 
2.15.1.3.13.18409 OTU 1 seq
prokMSA_id:61970 AJ244701 Flavobacterium sp. V4.MS.29 
2.15.1.3.13.18629 OTU 1 seq
prokMSA_id:69822 AB073564 Cytophaga sp. MBIC04693 
2.15.1.3.13.21758 OTU 1 seq
prokMSA_id:34151 AF143825 clone 4-Org1-38 
2.15.1.3.13.26403 OTU 6 seqs
prokMSA_id:79769 AF468244 clone ARKDMS-74 
prokMSA_id:80367 AF468265 clone ARKCH4-88 
prokMSA_id:80618 AF468408 Arctic sea ice ARK10044 
prokMSA_id:80944 AF468428 Arctic sea ice ARK10223 
prokMSA_id:81144 AY167316 Bacteroidetes ANT9105 
prokMSA_id:81534 AY165581 Antarctic sea ice clone ANTXI/4_14-81 
2.15.1.3.13.32063 OTU 5 seqs
prokMSA_id:2400 AJ005972 Cytophaga baltica str. NN015840 strain
prokMSA_id:45411 AF235118 Cytophaga sp. KT02ds20 
prokMSA_id:67189 AF497997 Cellulophaga sp. MM#3 
prokMSA_id:70798 AF493680 Cellulophaga sp. SW265 
prokMSA_id:71231 AF493681 Cellulophaga sp. SW285 
2.15.1.3.13.32210 OTU 6 seqs
prokMSA_id:2401 AJ005973 Cytophaga fucicola str. NN015860 strain
prokMSA_id:23812 AB032510 Cellulophaga lytica strain:IFO15986
prokMSA_id:25886 AB032511 Cellulophaga lytica strain:IFO16020
prokMSA_id:28162 AB032512 Cellulophaga lytica strain:IFO16021
prokMSA_id:29722 AB032509 Cellulophaga lytica strain:MBIC1544
prokMSA_id:34517 AB032513 Cellulophaga lytica strain:IFO16022
2.15.1.3.13.40872 OTU 2 seqs
prokMSA_id:2407 AF170754 str. QSSC9-14
prokMSA_id:39184 AY027806 Aequorivita crocea Y12-2T 
2.15.1.3.13.42213 OTU 4 seqs
prokMSA_id:23255 AY027802 Aequorivita ferruginea SW49T 
prokMSA_id:33316 AY027805 Aequorivita lipolytica Y10-2T 
prokMSA_id:40585 AY027804 Aequorivita ferruginea O9-2 
prokMSA_id:52249 AY027803 Aequorivita ferruginea G#5 
2.15.1.3.13.6481 OTU 1 seq
prokMSA_id:81311 AB080771 Arenibacter troitsensis 
2.15.1.3.13.7561 OTU 1 seq
prokMSA_id:80846 AF468420 Arctic sea ice associated ARK10141 
2.15.1.3.13.7900 OTU 1 seq
prokMSA_id:58646 AB078039 Flexibacter aggregans strain:IFO 15975
2.15.1.3.13.8438 OTU 1 seq
prokMSA_id:20776 AJ318193 Bacteroidetes clone BIvi22
2.15.1.3.13.8533 OTU 1 seq
prokMSA_id:80973 AF468422 Arctic sea ice associated ARK10146 
2.15.1.3.13.9184 OTU 1 seq
prokMSA_id:2403 U85886 ACAM 210
2.15.1.3.13.9190 OTU 1 seq
prokMSA_id:2406 AF170735 str. QSSC1-18
2.15.1.3.13.9900 OTU 1 seq
prokMSA_id:67321 AF493682 Flavobacteriaceae str. SW268 
2.15.1.3.14 PSF.TORQUIS_SUBGROUP 29 seqs
2.15.1.3.14.1441 OTU 1 seq
prokMSA_id:49407 AF427479 Cytophaga sp. 41-DBG2 
2.15.1.3.14.14420 OTU 1 seq
prokMSA_id:77007 AF550584 Bacteroidetes Ko310 
2.15.1.3.14.15305 OTU 1 seq
prokMSA_id:46475 AF235117 Cytophaga sp. KT0803 
2.15.1.3.14.18315 OTU 1 seq
prokMSA_id:24630 AB035556 marine strain:GY12
2.15.1.3.14.18412 OTU 1 seq
prokMSA_id:61974 AJ244698 Flavobacterium sp. V4.BS.09 marine isolate
2.15.1.3.14.18436 OTU 1 seq
prokMSA_id:61980 AJ244691 Flavobacterium sp. V4.BO.21 
2.15.1.3.14.21125 OTU 1 seq
prokMSA_id:70738 AF359551 Marine ALUS253_6 
2.15.1.3.14.32241 OTU 4 seqs
prokMSA_id:2427 AB017046 Cytophaga sp. str. J18-M01
prokMSA_id:2428 AB017047 Cytophaga sp. str. AA8-2
prokMSA_id:2429 AB017048 Cytophaga sp. str. AA8-3
prokMSA_id:79767 AY195836 Kordia algicida 
2.15.1.3.14.32380 OTU 2 seqs
prokMSA_id:2419 U85881 Psychroflexus torquis str. 651 ACAM 623
prokMSA_id:2421 AF001365 Psychroflexus torquis ACAM 627
2.15.1.3.14.34468 OTU 3 seqs
prokMSA_id:60400 AF513434 Psychroflexus sp. LA1 
prokMSA_id:62485 AF513959 Flavobacteriaceae clone LA1-B21N 
prokMSA_id:62486 AF513958 Flavobacteriaceae clone LAS-B39N 
2.15.1.3.14.41117 OTU 2 seqs
prokMSA_id:80980 AF468410 Arctic sea ice ARK10063 
prokMSA_id:81527 AY167320 Psychroflexus torquis strain ANT9268 
2.15.1.3.14.41362 OTU 3 seqs
prokMSA_id:75202 AF536384 Marine KMM 3910 
prokMSA_id:75852 AF536383 Marine KMM 3909 
prokMSA_id:76110 AF536386 Marine KMM 3937 
2.15.1.3.14.4308 OTU 1 seq
prokMSA_id:42542 AY028207 Marine BBFL7 
2.15.1.3.14.6206 OTU 1 seq
prokMSA_id:35551 AF300973 A16s 
2.15.1.3.14.6626 OTU 1 seq
prokMSA_id:74154 AF493688 Flavobacteriaceae str. SW256 
2.15.1.3.14.6657 OTU 1 seq
prokMSA_id:80722 AF468406 Arctic sea ice ARK10004 
2.15.1.3.14.9223 OTU 1 seq
prokMSA_id:2411 M92279 Flavobacterium salegens DSM 5424
2.15.1.3.14.9224 OTU 1 seq
prokMSA_id:2413 AF001373 str. IC148
2.15.1.3.14.970 OTU 1 seq
prokMSA_id:80029 AF468435 Arctic sea ice ARK9985 
2.15.1.3.14.9899 OTU 1 seq
prokMSA_id:67320 AF493683 Flavobacteriaceae str. SW058 
2.15.1.3.15 PSH.BURTONENSIS_SUBGROUP 40 seqs
2.15.1.3.15.11767 OTU 1 seq
prokMSA_id:36868 AF355051 Cytophagales Arctic97A-14 
2.15.1.3.15.13054 OTU 1 seq
prokMSA_id:61113 AF530147 Cf. Cytophaga sp. MGP-67 
2.15.1.3.15.13204 OTU 1 seq
prokMSA_id:61189 AY080916 clone UC1 
2.15.1.3.15.16699 OTU 1 seq
prokMSA_id:68987 AY033305 Cytophagales MB11E04 ; tRNA-Ile and tRNA-Ala genes complete 
2.15.1.3.15.1722 OTU 1 seq
prokMSA_id:79594 AF382130 clone ZA3907c 
2.15.1.3.15.18871 OTU 1 seq
prokMSA_id:56043 AF406541 CFB group clone AEGEAN_179 
2.15.1.3.15.20634 OTU 1 seq
prokMSA_id:18364 AF354618 Cytophagales Arctic97A-13 
2.15.1.3.15.21590 OTU 1 seq
prokMSA_id:17872 AJ400340 marine ZD0203 
2.15.1.3.15.2296 OTU 1 seq
prokMSA_id:49506 AB032514 Marine MBIC1357 strain:MBIC1357
2.15.1.3.15.2551 OTU 1 seq
prokMSA_id:80226 AF468303 clone ARKICE-115 
2.15.1.3.15.2921 OTU 1 seq
prokMSA_id:34569 AF354619 Cytophagales Arctic96AD-4 
2.15.1.3.15.29659 OTU 3 seqs
prokMSA_id:2443 U62914 Gelidibacter algens str. C8ST5 ACAM 536
prokMSA_id:2444 U62916 Gelidibacter algens str. A296 ACAM 551
prokMSA_id:17502 U62915 Gelidibacter algens ACAM 550 
2.15.1.3.15.29828 OTU 2 seqs
prokMSA_id:21203 AJ344134 Gelidibacter mesophilus strain 2SM28
prokMSA_id:25577 AJ344133 Gelidibacter mesophilus strain 2SM29T
2.15.1.3.15.3140 OTU 1 seq
prokMSA_id:79768 AY187688 Bacteroidetes KMM 3901 
2.15.1.3.15.31572 OTU 3 seqs
prokMSA_id:2438 U62913 Psychroserpens burtonensis ACAM 188
prokMSA_id:2445 U62911 Psychroserpens burtonensis ACAM 167
prokMSA_id:2446 U62912 Psychroserpens burtonensis ACAM 181
2.15.1.3.15.34211 OTU 4 seqs
prokMSA_id:22447 AF235111 Cytophaga sp. KT11ds2 
prokMSA_id:24934 AF203475 Cytophaga marinoflava 
prokMSA_id:61968 AJ244703 Flavobacterium sp. V4.MS.12 
prokMSA_id:82233 AY167315 Cytophaga marinoflava strain ANT9103 
2.15.1.3.15.4058 OTU 1 seq
prokMSA_id:73211 AF359540 Marine ATAM173a_3 
2.15.1.3.15.42085 OTU 2 seqs
prokMSA_id:80530 AF468430 Arctic sea ice ARK10267 
prokMSA_id:81008 AF468421 Arctic sea ice associated ARK10144 
2.15.1.3.15.42937 OTU 2 seqs
prokMSA_id:60625 AF406550 CFB group clone AEGEAN_129 
prokMSA_id:60635 AF406539 CFB group clone AEGEAN_136 
2.15.1.3.15.4888 OTU 1 seq
prokMSA_id:79974 AF468277 clone ARKIA-137 
2.15.1.3.15.5034 OTU 1 seq
prokMSA_id:80559 AF468243 clone ARKDMS-33 
2.15.1.3.15.5369 OTU 1 seq
prokMSA_id:72771 AF493689 Flavobacteriaceae str. SW269 
2.15.1.3.15.547 OTU 1 seq
prokMSA_id:71563 AF254113 Abyssal strain AII3 
2.15.1.3.15.6811 OTU 1 seq
prokMSA_id:80764 AF468407 Arctic sea ice associated ARK10007 
2.15.1.3.15.7727 OTU 1 seq
prokMSA_id:35713 AF286039 Saltmarsh clone LCP-72 
2.15.1.3.15.9133 OTU 1 seq
prokMSA_id:81654 AY218549 clone KD1-108 
2.15.1.3.15.9370 OTU 1 seq
prokMSA_id:2450 L10948 marine snow associated clone agg13
2.15.1.3.15.9391 OTU 1 seq
prokMSA_id:2462 AB017597 Flavobacterium 5N-3 str. 5N-3
2.15.1.3.15.9394 OTU 1 seq
prokMSA_id:2463 AB015545 Cytophaga sp. str. BD2-17
2.15.1.3.15.9873 OTU 1 seq
prokMSA_id:67313 AF493690 Flavobacteriaceae str. SW325 
2.15.1.3.16 ENVIRONMENTAL_CLONE_FL7_SUBGROUP 4 seqs
2.15.1.3.16.10519 OTU 1 seq
prokMSA_id:51701 AF354616 Cytophagales Arctic96B-24 
2.15.1.3.16.20945 OTU 1 seq
prokMSA_id:77994 AJ535223 Cytophagales clone Hyd24-17
2.15.1.3.16.21316 OTU 1 seq
prokMSA_id:26293 AF419681 CS_B009 
2.15.1.3.16.9401 OTU 1 seq
prokMSA_id:2469 L10937 clone FL7
2.15.1.3.99 VARIOUS 16 seqs
2.15.1.3.99.28005 OTU 4 seqs
prokMSA_id:55430 AB073572 Cytophaga sp. I-689 
prokMSA_id:66036 AB073571 Cytophaga sp. I-105 
prokMSA_id:66037 AB073570 Cytophaga sp. I-1147 
prokMSA_id:66039 AB073568 Cytophaga sp. I-601 
2.15.1.3.99.34534 OTU 2 seqs
prokMSA_id:67318 AF493685 Flavobacteriaceae str. SW152 
prokMSA_id:67319 AF493684 Flavobacteriaceae str. SW062 
2.15.1.3.99.37629 OTU 3 seqs
prokMSA_id:80388 AF468305 clone ARKICE-35 
prokMSA_id:81071 AY165589 Arctic sea ice clone ARKXV/1-43 
prokMSA_id:81822 AY165587 Arctic sea ice clone ARKXV/1-139 
2.15.1.3.99.38718 OTU 5 seqs
prokMSA_id:23725 AJ391201 Flavobacterium sp. AS-40 
prokMSA_id:46941 AF218782 Muricauda ruestringensis 
prokMSA_id:51895 AF386740 Flavobacterium sp. 7BT 
prokMSA_id:60401 AF513435 Flavobacteriaceae LA8 
prokMSA_id:70926 AB073562 Cytophaga sp. MBIC04684 
2.15.1.3.99.40775 OTU 2 seqs
prokMSA_id:66035 AB073573 Cytophaga sp. I-545 
prokMSA_id:66040 AB073567 Cytophaga sp. T-588 
2.15.1.4 CYTOPHAGA_GROUP_II 25 seqs
2.15.1.4.10348 OTU 1 seq
prokMSA_id:28868 AJ318122 clone BIfcii9
2.15.1.4.11975 OTU 1 seq
prokMSA_id:22467 AF419688 CS_B047 
2.15.1.4.13337 OTU 1 seq
prokMSA_id:52704 AF275921 AA26 
2.15.1.4.15640 OTU 1 seq
prokMSA_id:77203 AJ519404 flavobacterium sp. clone JG37-AG-150
2.15.1.4.18278 OTU 1 seq
prokMSA_id:78229 AJ535228 clone Hyd24-66
2.15.1.4.19028 OTU 1 seq
prokMSA_id:62698 AF507861 Bacteroidetes clone ML623J-20 
2.15.1.4.19027 OTU 1 seq
prokMSA_id:62694 AF507864 Bacteroidetes clone ML635J-44 
2.15.1.4.19029 OTU 1 seq
prokMSA_id:62699 AF507860 Bacteroidetes clone ML635J-1 
2.15.1.4.19129 OTU 1 seq
prokMSA_id:77721 AJ535258 Cytophagales clone Hyd89-72
2.15.1.4.19180 OTU 1 seq
prokMSA_id:16915 AF371924 clone p-2534-18B5 
2.15.1.4.21257 OTU 1 seq
prokMSA_id:79223 AB100010 sequences clone: IndB4-9
2.15.1.4.21439 OTU 1 seq
prokMSA_id:79287 AF382106 clone ZA2623c 
2.15.1.4.21970 OTU 1 seq
prokMSA_id:79316 AF382110 clone ZA2515c 
2.15.1.4.2684 OTU 1 seq
prokMSA_id:80284 AF468245 clone ARKDMS-428 
2.15.1.4.2981 OTU 1 seq
prokMSA_id:57464 AJ441217 CFB group clone P. palm C/A 20
2.15.1.4.4163 OTU 1 seq
prokMSA_id:80463 AY188307 clone KD3-67 
2.15.1.4.5055 OTU 1 seq
prokMSA_id:80562 AF468278 clone ARKIA-105 
2.15.1.4.5153 OTU 1 seq
prokMSA_id:42624 AJ296576 GR-WP33-68 clone GR-WP33-68
2.15.1.4.5798 OTU 1 seq
prokMSA_id:81270 AY216455 clone KM68 
2.15.1.4.7215 OTU 1 seq
prokMSA_id:82061 AY216445 clone KM02 
2.15.1.4.809 OTU 1 seq
prokMSA_id:79430 AB100009 sequences clone: IndB4-4
2.15.1.4.9392 OTU 1 seq
prokMSA_id:66632 AY094494 Cytophagaceae clone 1-13 
2.15.1.4.9422 OTU 1 seq
prokMSA_id:2477 AJ224942 str. Koll-22
2.15.1.4.9423 OTU 1 seq
prokMSA_id:2478 AB015264 Cytophaga sp. str. JTB250
2.15.1.4.9816 OTU 1 seq
prokMSA_id:45081 AJ347762 Bacteroidetes clone ST-12K19
2.15.2 SPHINGOBACTERIUM_GROUP 43 seqs
2.15.2.10223 OTU 1 seq
prokMSA_id:66760 AJ459411 Sphingobacterium spiritivorum strain DSM 2582
2.15.2.10968 OTU 1 seq
prokMSA_id:67493 AF493691 Sphingobacteriaceae str. EP211 
2.15.2.11439 OTU 1 seq
prokMSA_id:81939 AY218622 clone KD3-93 
2.15.2.12916 OTU 1 seq
prokMSA_id:68384 AF492000 Sphingobacterium sp. HC-6155 
2.15.2.13589 OTU 1 seq
prokMSA_id:22691 AJ438176 Sphingobacterium faecium strain DSM 11690T
2.15.2.13640 OTU 1 seq
prokMSA_id:37703 AJ296577 GR-Sh2-12 clone GR-Sh2-12
2.15.2.15019 OTU 1 seq
prokMSA_id:24148 AF388029 Flavobacterium sp. 36 
2.15.2.15308 OTU 1 seq
prokMSA_id:46477 AJ438175 Flavobacterium mizutaii strain DSM 11724T
2.15.2.15662 OTU 1 seq
prokMSA_id:31489 AJ295473 rape rhizosphere wr0012 
2.15.2.17025 OTU 1 seq
prokMSA_id:77459 AY167837 Sphingobacterium sp. SAFR-022 
2.15.2.18223 OTU 1 seq
prokMSA_id:78203 AB074637 CFB group clone:APe2_8
2.15.2.19130 OTU 1 seq
prokMSA_id:17550 AF336356 Wuba47 
2.15.2.19452 OTU 1 seq
prokMSA_id:40435 AF260710 Sphingobacterium sp. S3 
2.15.2.20337 OTU 1 seq
prokMSA_id:56235 AB078046 Flexibacter canadensis strain:IFO 15130
2.15.2.20946 OTU 1 seq
prokMSA_id:77995 AB098594 Sphingobacterium sp. TUT1026 
2.15.2.21943 OTU 1 seq
prokMSA_id:19131 AJ318181 Bacteroidetes clone BIsii5
2.15.2.2835 OTU 1 seq
prokMSA_id:42382 AJ438173 Pedobacter saltans strain DSM 12145T
2.15.2.28498 OTU 3 seqs
prokMSA_id:2484 AB020206 Sphingobacterium OM-E81 str. OM-E81
prokMSA_id:29206 AJ438174 Pedobacter piscium strain DSM 11725T
prokMSA_id:39088 AJ438170 Pedobacter cryoconitis strain DSM 14825T
2.15.2.29371 OTU 6 seqs
prokMSA_id:2481 M11657 Pedobacter heparinus str. HIM 762-3 ATCC 13125
prokMSA_id:28476 AY038610 clone GL184.1 
prokMSA_id:39221 AY038609 clone GL182.29 
prokMSA_id:40607 AJ438171 Pedobacter africanus strain DSM 12126T
prokMSA_id:52839 AJ438172 Pedobacter heparinus strain DSM 2366T
prokMSA_id:68958 AY038611 clone GL182.33 
2.15.2.30886 OTU 2 seqs
prokMSA_id:28059 AF233292 Tuber borchii symbiont b-Z43 
prokMSA_id:51029 AF233294 Tuber borchii symbiont b-10RA 
2.15.2.42697 OTU 2 seqs
prokMSA_id:79272 AB100738 Sphingobacterium multivorum 
prokMSA_id:79519 AB100739 Sphingobacterium multivorum 
2.15.2.4371 OTU 1 seq
prokMSA_id:65426 AF513095 clone 47 
2.15.2.5568 OTU 1 seq
prokMSA_id:19806 AF445665 CFB group clone SM1C08 
2.15.2.5671 OTU 1 seq
prokMSA_id:81220 AY218724 clone KD5-103 
2.15.2.6713 OTU 1 seq
prokMSA_id:43436 AJ318187 Bacteroidetes clone BIti35
2.15.2.7144 OTU 1 seq
prokMSA_id:82023 AY218561 clone KD1-39 
2.15.2.7440 OTU 1 seq
prokMSA_id:74255 AJ318176 clone BIsi7
2.15.2.746 OTU 1 seq
prokMSA_id:26452 AF255646 clone Ebpr7 
2.15.2.7651 OTU 1 seq
prokMSA_id:36348 AB076874 Sphingobacterium sp. clone:OS1L-21
2.15.2.9368 OTU 1 seq
prokMSA_id:50974 AJ295641 KF-Gitt2-34 
2.15.2.9442 OTU 1 seq
prokMSA_id:2485 AF170741 str. QSSC5-1
2.15.2.9443 OTU 1 seq
prokMSA_id:2486 AB022889 str. MBIC4147
2.15.2.9445 OTU 1 seq
prokMSA_id:2488 AF097805 clone 49511
2.15.2.9971 OTU 1 seq
prokMSA_id:43819 AJ318173 Bacteroidetes clone BIsi29
2.15.4 LEWINELLA_GROUP 101 seqs
2.15.4.2 FLX.SANCTI_SUBGROUP 75 seqs
2.15.4.2.10015 OTU 1 seq
prokMSA_id:2521 AF078775 Chitinophaga pinensis ACM 2034
2.15.4.2.10413 OTU 1 seq
prokMSA_id:82403 AY218571 clone KD2-128 
2.15.4.2.11435 OTU 1 seq
prokMSA_id:81937 AY218691 clone KD8-73 
2.15.4.2.13385 OTU 1 seq
prokMSA_id:52719 AJ289995 FukuN24 
2.15.4.2.13676 OTU 1 seq
prokMSA_id:68460 AF459795 Symbiont cf. Flavobacterium of Acromyrmex octospinosus 
2.15.4.2.16093 OTU 1 seq
prokMSA_id:68865 AJ318166 Bacteroidetes clone BIrii20
2.15.4.2.16650 OTU 1 seq
prokMSA_id:40073 AJ290042 FukuS59 
2.15.4.2.16755 OTU 1 seq
prokMSA_id:31613 AJ252615 Agricultural soil clone SC-I-12 
2.15.4.2.16928 OTU 1 seq
prokMSA_id:47339 AF255635 clone Ebpr1 
2.15.4.2.16924 OTU 1 seq
prokMSA_id:23809 AF255636 clone Ebpr3 
2.15.4.2.17559 OTU 1 seq
prokMSA_id:61843 AF529321 Bacteroidetes clone CLi112 
2.15.4.2.18097 OTU 1 seq
prokMSA_id:70346 AF361195 Cytophagales clone 09 
2.15.4.2.18978 OTU 1 seq
prokMSA_id:32581 AY056829 Dipareforma spartinacae 
2.15.4.2.19603 OTU 1 seq
prokMSA_id:55504 AY124340 CS57 
2.15.4.2.19722 OTU 1 seq
prokMSA_id:78422 AY177767 Flavobacterium sp. isolate OF70 
2.15.4.2.19968 OTU 1 seq
prokMSA_id:17675 AJ318153 clone BIjii2
2.15.4.2.21387 OTU 1 seq
prokMSA_id:62965 AF527580 clone LPB08 
2.15.4.2.21554 OTU 1 seq
prokMSA_id:47936 AF385548 Flavobacterium-like sp. oral clone AZ105 
2.15.4.2.2522 OTU 1 seq
prokMSA_id:20042 AF314430 PHOS-HE31 
2.15.4.2.2900 OTU 1 seq
prokMSA_id:71851 AF181568 Flexibacter cf. sancti 
2.15.4.2.31718 OTU 3 seqs
prokMSA_id:25133 AY038613 clone GL182.1 
prokMSA_id:29854 AY038612 clone GL182.3 
prokMSA_id:50765 AY053480 AT425_EubA6 
2.15.4.2.32246 OTU 3 seqs
prokMSA_id:22940 AJ289993 FukuN21 
prokMSA_id:50093 AJ289963 isolate AH47 
prokMSA_id:72978 AF361187 Flexibacter sp. CF 1 
2.15.4.2.32368 OTU 2 seqs
prokMSA_id:52540 AJ318106 clone BIai2
prokMSA_id:82069 AY218564 clone KD1-64 
2.15.4.2.33044 OTU 4 seqs
prokMSA_id:25213 AJ295507 rape rhizosphere wr0053 
prokMSA_id:25227 AJ295511 rape rhizosphere wr0060 
prokMSA_id:35540 AJ295472 rape rhizosphere wr0011 
prokMSA_id:37328 AJ295464 rape rhizosphere wr0003 
2.15.4.2.37699 OTU 5 seqs
prokMSA_id:81076 AY218677 clone KD8-102 
prokMSA_id:81521 AY218630 clone KD4-25 
prokMSA_id:81847 AY218770 clone KD6-82 
prokMSA_id:82060 AY218765 clone KD6-69 
prokMSA_id:82169 AY218673 clone KD9-68 
2.15.4.2.4036 OTU 1 seq
prokMSA_id:81081 AY218615 clone KD3-74 
2.15.4.2.4131 OTU 1 seq
prokMSA_id:50373 AJ290025 GKS2-106 
2.15.4.2.42238 OTU 2 seqs
prokMSA_id:58620 AB078067 Flexibacter sancti strain:IFO 16033
prokMSA_id:58622 AB078066 Flexibacter sancti strain:IFO 15057
2.15.4.2.42375 OTU 8 seqs
prokMSA_id:79291 AY188323 clone KD6-86 
prokMSA_id:81414 AY218602 clone KD3-117 
prokMSA_id:81668 AY218629 clone KD4-19 
prokMSA_id:81789 AY218746 clone KD6-102 
prokMSA_id:81804 AY218658 clone KD9-156 
prokMSA_id:81845 AY218618 clone KD3-81 
prokMSA_id:82204 AY218628 clone KD4-13 
prokMSA_id:82316 AY218661 clone KD9-169 
2.15.4.2.42812 OTU 7 seqs
prokMSA_id:81462 AY218692 clone KD8-75 
prokMSA_id:81785 AY218593 clone KD2-78 
prokMSA_id:81875 AY218751 clone KD6-125 
prokMSA_id:81927 AY218762 clone KD6-48 
prokMSA_id:82231 AY218681 clone KD8-115 
prokMSA_id:82277 AY218704 clone KD7-116 
prokMSA_id:82360 AY218753 clone KD6-136 
2.15.4.2.461 OTU 1 seq
prokMSA_id:27005 AJ290011 FukuN23 
2.15.4.2.4869 OTU 1 seq
prokMSA_id:81165 AY218619 clone KD3-83 
2.15.4.2.4873 OTU 1 seq
prokMSA_id:43204 AF255627 clone Ebpr2 
2.15.4.2.5464 OTU 1 seq
prokMSA_id:58374 AF368190 Haliscomenobacter sp. clone SBRT303 
2.15.4.2.5676 OTU 1 seq
prokMSA_id:81227 AY218611 clone KD3-58 
2.15.4.2.6092 OTU 1 seq
prokMSA_id:42738 AB076886 Flexibacter sp. clone:TSL-25
2.15.4.2.6117 OTU 1 seq
prokMSA_id:42740 AF423292 soil clone 760-2 
2.15.4.2.752 OTU 1 seq
prokMSA_id:26459 AJ318185 Bacteroidetes clone BIti15
2.15.4.2.7853 OTU 1 seq
prokMSA_id:58621 AB078068 Flexibacter sancti strain:IFO 16034
2.15.4.2.7888 OTU 1 seq
prokMSA_id:58639 AB078049 Flexibacter filiformis strain:IFO 15056
2.15.4.2.7999 OTU 1 seq
prokMSA_id:82129 AY218733 clone KD5-2 
2.15.4.2.8245 OTU 1 seq
prokMSA_id:37034 AJ318121 Bacteroidetes clone BIfcii37
2.15.4.2.8658 OTU 1 seq
prokMSA_id:59355 AF502210 clone HP1B19 
2.15.4.2.8659 OTU 1 seq
prokMSA_id:59356 AF502209 clone HP1A28 
2.15.4.2.8862 OTU 1 seq
prokMSA_id:82223 AY211071 Bacteroidetes clone VC5 
2.15.4.2.9837 OTU 1 seq
prokMSA_id:81734 AY218589 clone KD2-72 
2.15.4.2.9915 OTU 1 seq
prokMSA_id:81764 AY211072 Bacteroidetes clone VC10 
2.15.4.2.9939 OTU 1 seq
prokMSA_id:2508 L11886 str. NIH
2.15.4.2.9985 OTU 1 seq
prokMSA_id:2519 M58782 Flexibacter filiformis str. FX e 1 ATCC 29495
2.15.4.3 LEW.NIGRICANS_SUBGROUP 26 seqs
2.15.4.3.10061 OTU 1 seq
prokMSA_id:2538 AF087071 clone MK04
2.15.4.3.10073 OTU 1 seq
prokMSA_id:2540 AB015265 Cytophaga sp. str. JTB251
2.15.4.3.10074 OTU 1 seq
prokMSA_id:73931 AJ290034 GKS2-217 
2.15.4.3.10076 OTU 1 seq
prokMSA_id:2546 AF039294 Lewinella nigricans str. SS-2 ATCC 23147
2.15.4.3.10099 OTU 1 seq
prokMSA_id:2551 AF039295 Lewinella persica str. T-3 ATCC 23167
2.15.4.3.10104 OTU 1 seq
prokMSA_id:2555 L10944 marine snow associated clone agg32
2.15.4.3.10103 OTU 1 seq
prokMSA_id:2554 AJ007870 clone LD1
2.15.4.3.10098 OTU 1 seq
prokMSA_id:2550 AF039292 Lewinella cohaerens str. II-2 ATCC 23123
2.15.4.3.10133 OTU 1 seq
prokMSA_id:2563 AF087054 clone BS2
2.15.4.3.11962 OTU 1 seq
prokMSA_id:52545 AJ318154 Bacteroidetes clone BIjiii32
2.15.4.3.17363 OTU 1 seq
prokMSA_id:63062 AB088636 Saprospira grandis 
2.15.4.3.19489 OTU 1 seq
prokMSA_id:33230 AF445681 CFB group clone SM1E03 
2.15.4.3.21823 OTU 1 seq
prokMSA_id:70825 AB088635 Saprospira sp. SS98-5 
2.15.4.3.31256 OTU 3 seqs
prokMSA_id:2534 AF087087 clone MK09
prokMSA_id:2535 AF087081 clone MK24
prokMSA_id:2539 AF087067 clone MK11
2.15.4.3.31777 OTU 2 seqs
prokMSA_id:39161 AF255645 clone Ebpr18 
prokMSA_id:41847 AF255639 clone Ebpr17 
2.15.4.3.515 OTU 1 seq
prokMSA_id:27029 AF314423 PHOS-HE45 
2.15.4.3.5629 OTU 1 seq
prokMSA_id:19837 AJ318142 Bacteroidetes clone BIhii16
2.15.4.3.8006 OTU 1 seq
prokMSA_id:21302 AB058900 Saprospira sp. SS91-40 
2.15.4.3.8386 OTU 1 seq
prokMSA_id:44289 AY062176 Marine MSC1 
2.15.4.3.8578 OTU 1 seq
prokMSA_id:29244 AB058902 Saprospira sp. SS95-4 
2.15.4.3.8660 OTU 1 seq
prokMSA_id:59357 AF502208 clone HP1A94 
2.15.4.3.8663 OTU 1 seq
prokMSA_id:59358 AF502207 clone HP1A82 
2.15.4.3.8762 OTU 1 seq
prokMSA_id:35871 AF314431 PHOS-HE35 
2.15.5 PERSICOBACTER_GROUP 14 seqs
2.15.5.10143 OTU 1 seq
prokMSA_id:2569 AF039296 Flexithrix dorotheae ATCC 23163
2.15.5.10173 OTU 1 seq
prokMSA_id:2574 Y18835 Taxeobacter ocellatus str. Myx2105
2.15.5.10176 OTU 1 seq
prokMSA_id:2575 Y18838 Taxeobacter ocellatus str. Txo1
2.15.5.10181 OTU 1 seq
prokMSA_id:2577 AB015263 Cytophaga sp. str. JTB248
2.15.5.41293 OTU 3 seqs
prokMSA_id:79775 AF449785 CFB group clone ML615J-4 
prokMSA_id:80577 AF449778 CFB group clone ML513M-12 
prokMSA_id:80853 AF449783 CFB group clone ML615J-16 
2.15.5.4162 OTU 1 seq
prokMSA_id:66029 AB073595 Cytophaga sp. I-1787 
2.15.5.42226 OTU 4 seqs
prokMSA_id:55666 AB078040 Flexibacter aggregans strain:IFO 15976
prokMSA_id:58611 AB078077 Flexithrix dorotheae strain:IFO 15987
prokMSA_id:58644 AB078041 Flexibacter aggregans strain:IFO 15990
prokMSA_id:58649 AB078037 Flexibacter aggregans strain:IFO 15973
2.15.5.6321 OTU 1 seq
prokMSA_id:65682 AF507701 soil clone C0108 
2.15.5.7823 OTU 1 seq
prokMSA_id:58610 AB078078 Microscilla arenaria strain:IFO 15982
2.15.6 CY.AURANTIACA_GROUP 122 seqs
2.15.6.10041 OTU 1 seq
prokMSA_id:81798 AY218749 clone KD6-118 
2.15.6.10212 OTU 1 seq
prokMSA_id:2588 AB015528 Cytophaga sp. str. BD1-27
2.15.6.10227 OTU 1 seq
prokMSA_id:2595 AF137029 str. NS114
2.15.6.10230 OTU 1 seq
prokMSA_id:2596 AF137381 Runella NS12 str. NS12
2.15.6.10224 OTU 1 seq
prokMSA_id:2592 AJ011917 Flectobacillus sp. str. MWH38
2.15.6.10776 OTU 1 seq
prokMSA_id:2605 Y18837 Taxeobacter Txc1 str. Txc1
2.15.6.10773 OTU 1 seq
prokMSA_id:2604 Y18836 Taxeobacter gelupurpurascens str. Txg1
2.15.6.10813 OTU 1 seq
prokMSA_id:2617 X90702 IFAM 3359
2.15.6.1134 OTU 1 seq
prokMSA_id:42147 AF275712 Hailaer soda lake Z3 
2.15.6.11910 OTU 1 seq
prokMSA_id:60399 AF513436 Flexibacter group LA48 
2.15.6.12436 OTU 1 seq
prokMSA_id:53218 AJ290037 GKS2-70 
2.15.6.12432 OTU 1 seq
prokMSA_id:59894 AY133105 Bacteroidetes clone ccspost2184 
2.15.6.13890 OTU 1 seq
prokMSA_id:60633 AF406540 CFB group clone AEGEAN_150 
2.15.6.1453 OTU 1 seq
prokMSA_id:19323 AF245645 CFB groupbacterium NAC60-3 
2.15.6.16428 OTU 1 seq
prokMSA_id:76741 AY168735 clone HC-2 
2.15.6.1675 OTU 1 seq
prokMSA_id:25963 AF366581 Acanthamoeba sp. TUMSJ-321 
2.15.6.16869 OTU 1 seq
prokMSA_id:24449 AF408309 Hymenobacter group clone KL-37-1-8 
2.15.6.17077 OTU 1 seq
prokMSA_id:46730 AF361196 Cytophagales clone 13 
2.15.6.17192 OTU 1 seq
prokMSA_id:40101 AF445698 CFB group clone SM1G04 
2.15.6.17758 OTU 1 seq
prokMSA_id:77550 AY167829 Taxeobacter sp. SAFR-033 
2.15.6.17737 OTU 1 seq
prokMSA_id:24593 AJ431335 CFB group ikaite c9 isolate ikaite c9
2.15.6.18766 OTU 1 seq
prokMSA_id:40349 AF408276 Hymenobacter sp. clone KL-26-2-11 
2.15.6.20058 OTU 1 seq
prokMSA_id:47791 AF408300 Hymenobacter group clone KL-2-4-4 
2.15.6.20096 OTU 1 seq
prokMSA_id:71214 AJ244689 Cyclobacterium sp. V4.MS.32 
2.15.6.20955 OTU 1 seq
prokMSA_id:71316 AJ290035 GKS2-33 
2.15.6.21216 OTU 1 seq
prokMSA_id:19038 AF408273 Hymenobacter group clone KL-2-5-13 
2.15.6.21877 OTU 1 seq
prokMSA_id:19106 AB015937 Microscilla sp. Nano 1 complete 
2.15.6.2347 OTU 1 seq
prokMSA_id:33872 AF215634 Endosymbiont of Acanthamoeba sp. Hungarian isolate 
2.15.6.24910 OTU 2 seqs
prokMSA_id:2602 Y18833 Hymenobacter roseosalivarius str. AA718
prokMSA_id:2603 Y18834 Hymenobacter roseosalivarius str. AA688
2.15.6.25569 OTU 3 seqs
prokMSA_id:2585 AB001518 unnamed organism
prokMSA_id:27784 AF319783 Encarsia pergandiella asexual line endosymbiont 
prokMSA_id:38123 AF350221 Brevipalpus phoenicis endosymbiont 
2.15.6.28007 OTU 2 seqs
prokMSA_id:35716 AJ289964 isolate AH57 
prokMSA_id:77393 AJ535729 Arcocella aquatica strain NO-502T
2.15.6.28575 OTU 2 seqs
prokMSA_id:58612 AB078076 Flexibacter tractuosus strain:IFO 16482
prokMSA_id:58615 AB078073 Flexibacter tractuosus strain:IFO 16035
2.15.6.30260 OTU 5 seqs
prokMSA_id:79655 AF468338 clone ARKCRY-50 
prokMSA_id:80153 AF468337 clone ARKCRY-118 
prokMSA_id:80290 AF468332 clone ARKMP-14 
prokMSA_id:80558 AF468342 clone ARKCRY-39 
prokMSA_id:81016 AY198110 clone ARKCRY2 
2.15.6.30428 OTU 2 seqs
prokMSA_id:20292 AF408275 Hymenobacter sp. clone KL-2-4-9 
prokMSA_id:42223 AF408274 Hymenobacter sp. clone KL-2-4-2 
2.15.6.3081 OTU 1 seq
prokMSA_id:79737 AY193144 clone Bol18 
2.15.6.3192 OTU 1 seq
prokMSA_id:20151 AJ290033 GKS2-216 
2.15.6.32831 OTU 4 seqs
prokMSA_id:23691 AF408306 Hymenobacter group clone KL-94-1-15 
prokMSA_id:36577 AF408279 Taxeobacter sp. clone KL-59-7-7 
prokMSA_id:41126 AF408272 Taxeobacter sp. clone KL-2-5-12 
prokMSA_id:46108 AF408278 Taxeobacter sp. clone KL-2-4-3 
2.15.6.32843 OTU 3 seqs
prokMSA_id:2614 X90704 IFAM 2074
prokMSA_id:2615 X90701 IFAM 3211
prokMSA_id:2618 X90705 IFAM 3359
2.15.6.33968 OTU 3 seqs
prokMSA_id:67489 AF493693 Flectobacillus sp. EP293 
prokMSA_id:77370 AY065626 Flectobacillus speluncae strain GWF20B 
prokMSA_id:77560 AY065625 Flectobacillus speluncae strain GWF20C 
2.15.6.37228 OTU 37 seqs
prokMSA_id:17682 AF408281 Hymenobacter group clone KL-11-1-4 
prokMSA_id:18171 AF408317 Hymenobacter group clone KL-114-2-8 
prokMSA_id:18440 AF408285 Hymenobacter group clone KL-13-4-2 
prokMSA_id:18647 AF408320 Hymenobacter group clone KL-114-2-1 
prokMSA_id:18835 AF408321 Hymenobacter group clone KL-111-2-4 
prokMSA_id:19707 AF408318 Hymenobacter group clone KL-114-2-3 
prokMSA_id:21658 AF408307 Hymenobacter group clone KL-93-1-11 
prokMSA_id:22065 AF408301 Hymenobacter group clone KL-94-2-7 
prokMSA_id:23697 AF408293 Hymenobacter group clone KL-48-1-8 
prokMSA_id:24199 AF408288 Hymenobacter group clone KL-27-1-4 
prokMSA_id:24408 AF408315 Hymenobacter group clone KL-125-4-4 
prokMSA_id:26934 AF408319 Hymenobacter group clone KL-114-2-2 
prokMSA_id:27258 AF408322 Hymenobacter group clone KL-111-2-2 
prokMSA_id:28499 AF408283 Hymenobacter group clone KL-114-2-5 
prokMSA_id:29431 AF408310 Hymenobacter group clone KL-26-2-7 
prokMSA_id:29557 AF408289 Hymenobacter group clone KL-27-1-8 
prokMSA_id:29868 AF408292 Hymenobacter group clone KL-48-1-3 
prokMSA_id:36763 AF408286 Hymenobacter group clone KL-2-5-1 
prokMSA_id:37430 AF408314 Hymenobacter group clone KL-26-2-14 
prokMSA_id:38961 AF408313 Hymenobacter group clone KL-26-2-15 
prokMSA_id:39156 AF408297 Hymenobacter group clone KL-59-7-4 
prokMSA_id:39638 AF408303 Hymenobacter group clone KL-94-2-11 
prokMSA_id:39725 AF408287 Hymenobacter group clone KL-27-1-12 
prokMSA_id:39913 AF408302 Hymenobacter group clone KL-94-2-4 
prokMSA_id:39988 AF408304 Hymenobacter group clone KL-94-1-4 
prokMSA_id:40455 AF408284 Hymenobacter group clone KL-125-4-11 
prokMSA_id:41203 AF408295 Hymenobacter group clone KL-59-7-8 
prokMSA_id:42218 AF408291 Hymenobacter group clone KL-36-1-7 
prokMSA_id:42810 AF408294 Hymenobacter group clone KL-53-2-5 
prokMSA_id:42815 AF408282 Hymenobacter group clone KL-111-2-9 
prokMSA_id:45352 AF408311 Hymenobacter group clone KL-26-2-4 
prokMSA_id:47580 AF408299 Hymenobacter group clone KL-94-1-6 
prokMSA_id:49913 AF408305 Hymenobacter group clone KL-94-1-3 
prokMSA_id:50263 AF408298 Hymenobacter group clone KL-93-1-12 
prokMSA_id:52329 AF408290 Hymenobacter group clone KL-27-1-9 
prokMSA_id:52380 AF408296 Hymenobacter group clone KL-59-7-9 
prokMSA_id:71125 AF408316 Hymenobacter group clone KL-125-4-2 
2.15.6.4100 OTU 1 seq
prokMSA_id:80447 AF468340 clone ARKCRY-20 
2.15.6.4188 OTU 1 seq
prokMSA_id:66032 AB073591 Cytophaga sp. T-561 
2.15.6.42192 OTU 4 seqs
prokMSA_id:58607 AB078081 Microscilla sericea strain:IFO 15983
prokMSA_id:58616 AB078072 Flexibacter tractuosus strain:IFO 15989
prokMSA_id:58617 AB078071 Flexibacter tractuosus strain:IFO 15981
prokMSA_id:58619 AB078069 Flexibacter tractuosus strain:IFO 15979
2.15.6.42227 OTU 2 seqs
prokMSA_id:58613 AB078074 Flexibacter tractuosus strain:IFO 16037
prokMSA_id:58614 AB078075 Flexibacter tractuosus strain:IFO 16038
2.15.6.42260 OTU 3 seqs
prokMSA_id:58636 AB078052 Flexibacter flexilis strain:IFO 16026
prokMSA_id:58637 AB078051 Flexibacter flexilis strain:IFO 16025
prokMSA_id:58638 AB078050 Flexibacter flexilis strain:IFO 15060
2.15.6.42729 OTU 3 seqs
prokMSA_id:70352 AF408308 Hymenobacter group clone KL-93-1-10 
prokMSA_id:77448 AY167836 Taxeobacter sp. SAFR-023 
prokMSA_id:82222 AJ549285 Hymenobacter sp. NS/50 strain NS/50
2.15.6.42834 OTU 2 seqs
prokMSA_id:18798 AF289149 Cytophagales clone PRD01a001B 
prokMSA_id:28897 AF361200 Cytophagales clone 30 
2.15.6.4934 OTU 1 seq
prokMSA_id:80523 AF468433 Arctic sea ice ARK10280 
2.15.6.5635 OTU 1 seq
prokMSA_id:49920 AF314419 PHOS-HE21 
2.15.6.5745 OTU 1 seq
prokMSA_id:20428 AJ318145 clone BIhii45
2.15.6.5815 OTU 1 seq
prokMSA_id:43316 AF408277 Hymenobacter group clone KL-27-1-11 
2.15.6.5886 OTU 1 seq
prokMSA_id:74081 AY038797 CFB group clone TAF-A99 
2.15.6.6752 OTU 1 seq
prokMSA_id:36224 AF408270 Hymenobacter group clone KL-53-2-6 
2.15.6.720 OTU 1 seq
prokMSA_id:26447 AF445684 CFB group clone SM1E06 
2.15.6.7762 OTU 1 seq
prokMSA_id:29165 X85209 Unknown organism 0411
2.15.6.7805 OTU 1 seq
prokMSA_id:58608 AB078080 Microscilla marina strain:IFO 16560
2.15.6.7855 OTU 1 seq
prokMSA_id:58624 AB078065 Flexibacter ruber strain:IFO 16677
2.15.6.7880 OTU 1 seq
prokMSA_id:58635 AB078053 Flexibacter flexilis strain:IFO 16027
2.15.6.8654 OTU 1 seq
prokMSA_id:59352 AF502211 clone HP1A92 
2.15.6.8887 OTU 1 seq
prokMSA_id:82234 AJ549284 Hymenobacter sp. NS/2 strain NS/2
2.15.7 FLX.LITORALIS_GROUP 1 seq
2.15.7.7857 OTU 1 seq
prokMSA_id:58627 AB078061 Flexibacter roseolus strain:IFO 16030
2.15.8 TMN.LAPSUM_GROUP 7 seqs
2.15.8.10841 OTU 1 seq
prokMSA_id:2626 L11703 Thermonema lapsum ATCC 43542
2.15.8.26175 OTU 3 seqs
prokMSA_id:2628 Y08956 Thermonema rossianum str. NR-27T
prokMSA_id:2629 Y08957 Thermonema rossianum str. SC-1
prokMSA_id:2630 Y08958 Thermonema rossianum str. AG3-1
2.15.8.26195 OTU 2 seqs
prokMSA_id:2631 AF027008 clone OPB73
prokMSA_id:2632 AF018199 clone env.OPS 17
2.15.8.4495 OTU 1 seq
prokMSA_id:65462 AY102323 clone a13121 
2.15.11 RHODOTHERMUS_GROUP 27 seqs
2.15.11.10360 OTU 1 seq
prokMSA_id:60166 AJ347046 clone TK44
2.15.11.10860 OTU 1 seq
prokMSA_id:2635 X95071 Rhodothermus obamensis str. OKD7
2.15.11.10866 OTU 1 seq
prokMSA_id:2638 AF068794 VC2.1 Bac16 complete 
2.15.11.10868 OTU 1 seq
prokMSA_id:2639 AF173818 clone LB3-13
2.15.11.10890 OTU 1 seq
prokMSA_id:2645 AJ242998 clone EHB-2
2.15.11.10896 OTU 1 seq
prokMSA_id:2647 AF018187 clone env.OPS 2
2.15.11.10925 OTU 1 seq
prokMSA_id:2650 AB015587 Cytophaga sp. str. BD7-14
2.15.11.10901 OTU 1 seq
prokMSA_id:2649 AB015543 Cytophaga sp. str. BD2-15
2.15.11.13860 OTU 1 seq
prokMSA_id:60616 AF407680 clone Y63 
2.15.11.13862 OTU 1 seq
prokMSA_id:60618 AF407678 clone Y30 
2.15.11.26155 OTU 8 seqs
prokMSA_id:2636 X80994 Rhodothermus marinus
prokMSA_id:2637 X77140 Rhodothermus marinus
prokMSA_id:29905 AF217497 Rhodothermus marinus strain PRQ-55 
prokMSA_id:35404 AF217495 Rhodothermus marinus strain DSM 4253 
prokMSA_id:37111 AF217498 Rhodothermus marinus strain NR-29 
prokMSA_id:38912 AF217496 Rhodothermus marinus strain PRQ-34 
prokMSA_id:43102 AF217493 Rhodothermus obamensis strain JCM 9785T 
prokMSA_id:74734 AF217494 Rhodothermus marinus strain DSM 4252T 
2.15.11.26245 OTU 6 seqs
prokMSA_id:2642 AJ133744 clone EHB
prokMSA_id:2646 AJ242999 clone EHB-3
prokMSA_id:28419 AF323500 Salinibacter ruber strain M31 
prokMSA_id:37202 AF323502 Salinibacter ruber strain POLA 18 
prokMSA_id:43485 AF323503 Salinibacter ruber strain POLA 13 
prokMSA_id:51274 AF323499 Salinibacter ruber strain M1 
2.15.11.42210 OTU 3 seqs
prokMSA_id:62692 AF507870 Bacteroidetes clone ML602J-37 
prokMSA_id:80582 AF449784 CFB group clone ML615J-21 
prokMSA_id:80977 AF449782 CFB group clone ML602M-3 
2.15.12 ENVIRONMENTAL_CLONE_OPB56_GROUP 6 seqs
2.15.12.10928 OTU 1 seq
prokMSA_id:2651 AF027009 clone OPB56
2.15.12.11638 OTU 1 seq
prokMSA_id:66901 AJ306807 clone SHA-83
2.15.12.18899 OTU 1 seq
prokMSA_id:25315 AF234699 sludge A12b 
2.15.12.2942 OTU 1 seq
prokMSA_id:57444 AJ441242 CFB group clone P. palm A 12
2.15.12.5696 OTU 1 seq
prokMSA_id:49950 AF402977 CFB/Green sulfur group clone 
2.15.12.9258 OTU 1 seq
prokMSA_id:36507 AJ296575 GR-296.II.11 clone GR-296.II.11
2.16 GREEN_SULFUR_BACTERIA 40 seqs
2.16.1 ENVIRONMENTAL_CLONE_WCHB1-02_GROUP 3 seqs
2.16.1.10941 OTU 1 seq
prokMSA_id:2657 AF050593 clone WCHB1-02
2.16.1.10957 OTU 1 seq
prokMSA_id:2660 AF050594 clone WCHB1-03
2.16.1.18972 OTU 1 seq
prokMSA_id:62668 AF507893 low G+C Gram-positive clone ML635J-28 
2.16.2 ENVIRONMENTAL_CLONE_OPI-6_GROUP 2 seqs
2.16.2.41296 OTU 2 seqs
prokMSA_id:38651 AF445706 green sulfur clone SM2A03 
prokMSA_id:74839 AF445663 green sulfur clone SM1C06 
2.16.3 CHLOROBIUM_GROUP 35 seqs
2.16.3.10996 OTU 1 seq
prokMSA_id:2677 AJ009458 clone SJA-28
2.16.3.11012 OTU 1 seq
prokMSA_id:2680 AF170103 Chloroherpeton thalassium
2.16.3.11034 OTU 1 seq
prokMSA_id:2692 Y08102 Chlorobium limicola str. 6230
2.16.3.11353 OTU 1 seq
prokMSA_id:51829 AF314426 PHOS-HC15 
2.16.3.12119 OTU 1 seq
prokMSA_id:51942 AF445704 clone SM1H06 
2.16.3.13832 OTU 1 seq
prokMSA_id:30516 AF445657 clone SM1B09 
2.16.3.15054 OTU 1 seq
prokMSA_id:60815 AY118151 Chlorobi clone Cart-N2 
2.16.3.15053 OTU 1 seq
prokMSA_id:60814 AY118152 Chlorobi clone Cart-N3 
2.16.3.18245 OTU 1 seq
prokMSA_id:62569 AJ504563 isolate P2CN14
2.16.3.2233 OTU 1 seq
prokMSA_id:63922 AJ290831 Chlorobium phaeobacteroides strain DSM 1677
2.16.3.27016 OTU 8 seqs
prokMSA_id:2674 M62791 Chlorobium vibrioforme str. 6030 DSM 260
prokMSA_id:2675 Y07837 Prosthecochloris aestuarii str. SK 413 DSM 271
prokMSA_id:19433 AJ291827 Chlorobium vibrioforme strain CHP 3402
prokMSA_id:39385 AJ291826 Prosthecochloris aestuarii strain CHP 3401
prokMSA_id:40271 AJ291828 Pelodictyon phaeum strain CIB 2401
prokMSA_id:60379 AF513460 Chlorobiaceae LA53 
prokMSA_id:63916 AJ290835 Prosthecochloris aestuarii strain 2K
prokMSA_id:63920 AJ290833 Chlorobium phaeovibrioides strain DSM 1678
2.16.3.32122 OTU 5 seqs
prokMSA_id:19434 AF445653 green sulfur clone SM1B03 
prokMSA_id:28620 AF445652 green sulfur clone SM1B02 
prokMSA_id:34775 AF445662 green sulfur clone SM1C05 
prokMSA_id:39737 AF445732 green sulfur clone SM2F10 
prokMSA_id:48102 AF445651 green sulfur clone SM1B01 
2.16.3.33493 OTU 6 seqs
prokMSA_id:2670 Y08108 Pelodictyon phaeoclathratiforme str. BU-1
prokMSA_id:2673 Y08105 Chlorobium phaeovibrioides str. 2631
prokMSA_id:18641 Y18253 Chlorobium ferrooxidans 
prokMSA_id:63878 AJ290829 Chlorobium vibrioforme f. thiosulfatophilum strain DSM 265
prokMSA_id:63917 AJ290834 Chlorobium phaeovibrioides strain DSM 270
prokMSA_id:63925 AJ290828 Chlorobium vibrioforme strain DSM 261
2.16.3.40677 OTU 2 seqs
prokMSA_id:73247 AJ290824 Chlorobium limicola strain DSM246
prokMSA_id:73772 AJ290826 Chlorobium limicola f. thiosulfatophilum strain 1630
2.16.3.40991 OTU 2 seqs
prokMSA_id:69274 AB054671 Chlorobium limicola strain:M1
prokMSA_id:71554 AJ290830 Chlorobium vibrioforme f. thiosulfatophilum strain NCIB 8346
2.16.3.441 OTU 1 seq
prokMSA_id:64302 AE012793 Chlorobium tepidum TLS section 14 of 194 of the complete gen
2.16.3.699 OTU 1 seq
prokMSA_id:63746 AJ290825 Chlorobium limicola f. thiosulfatophilum strain 1430
2.18 ENVIRONMENTAL_CLONE_WCHB1-31_GROUP 74 seqs
2.18.10114 OTU 1 seq
prokMSA_id:73947 AY082460 Chloroflexi clone 44a-B1-15 
2.18.10372 OTU 1 seq
prokMSA_id:60170 AJ347042 clone TK32
2.18.1087 OTU 1 seq
prokMSA_id:72208 AF419695 C1_B034 
2.18.11385 OTU 1 seq
prokMSA_id:45276 AF229790 TA17 
2.18.11442 OTU 1 seq
prokMSA_id:44630 AB046413 Anaerobic filamentous UNI-1 
2.18.11551 OTU 1 seq
prokMSA_id:2707 AF050568 clone WCHB1-63
2.18.11607 OTU 1 seq
prokMSA_id:2723 AJ009475 clone SJA-68
2.18.11606 OTU 1 seq
prokMSA_id:2722 AF050566 clone WCHB1-62
2.18.11608 OTU 1 seq
prokMSA_id:2724 AJ009500 clone SJA-170
2.18.11617 OTU 1 seq
prokMSA_id:2729 AJ009487 clone SJA-116
2.18.11609 OTU 1 seq
prokMSA_id:2725 AF029049 clone SB-34
2.18.11612 OTU 1 seq
prokMSA_id:2727 AF173817 clone LB3-100
2.18.11643 OTU 1 seq
prokMSA_id:2736 AF050569 clone WCHB1-31
2.18.11653 OTU 1 seq
prokMSA_id:66909 AJ306796 clone SHD-190
2.18.11641 OTU 1 seq
prokMSA_id:66905 AJ306801 clone SHD-262
2.18.11670 OTU 1 seq
prokMSA_id:2744 AJ009468 clone SJA-58
2.18.11698 OTU 1 seq
prokMSA_id:2752 AF005749 clone H1.43.f
2.18.11749 OTU 1 seq
prokMSA_id:66944 AJ306749 clone SHA-147
2.18.11752 OTU 1 seq
prokMSA_id:66946 AJ306744 clone SHA-27
2.18.1248 OTU 1 seq
prokMSA_id:71617 X84576 clone SBR2037
2.18.14252 OTU 1 seq
prokMSA_id:75761 AJ534639 clone JG36-TzT-90
2.18.14897 OTU 1 seq
prokMSA_id:38560 AF419668 a1b002 
2.18.15394 OTU 1 seq
prokMSA_id:75928 AJ519644 Chlorobi clone Sh765B-AG-22
2.18.17293 OTU 1 seq
prokMSA_id:70228 AF419665 a2b046 
2.18.17974 OTU 1 seq
prokMSA_id:69761 AF419689 C1_B004 
2.18.18207 OTU 1 seq
prokMSA_id:25243 AF445692 green nonsulfur clone SM1F10 
2.18.18754 OTU 1 seq
prokMSA_id:63208 AF524018 clone FW24 
2.18.18861 OTU 1 seq
prokMSA_id:32511 AF254398 UASB_TL14 complete 
2.18.18945 OTU 1 seq
prokMSA_id:31908 AJ249112 SHA-300 
2.18.20135 OTU 1 seq
prokMSA_id:71233 AF419669 a2b029 
2.18.2221 OTU 1 seq
prokMSA_id:26613 AB067647 Anaerobic filamentous STL-6-O1 
2.18.2504 OTU 1 seq
prokMSA_id:19494 AF407193 clone GIF1 
2.18.26793 OTU 2 seqs
prokMSA_id:2710 AJ009480 clone SJA-101
prokMSA_id:38185 AF395429 Eub No. 13 
2.18.2931 OTU 1 seq
prokMSA_id:71875 AF507692 soil clone S0208 
2.18.2945 OTU 1 seq
prokMSA_id:71882 AF419699 C1_B046 
2.18.33228 OTU 2 seqs
prokMSA_id:2750 AF050571 clone WCHB1-50
prokMSA_id:2751 AJ009460 clone SJA-35
2.18.33782 OTU 3 seqs
prokMSA_id:2738 AJ009492 clone SJA-131
prokMSA_id:34771 AF323767 clone BA046 complete 
prokMSA_id:49666 AJ249111 SHA-53 
2.18.33790 OTU 2 seqs
prokMSA_id:66949 AJ306740 clone SHA-2
prokMSA_id:81161 AY214200 clone ZZ14AC19 
2.18.34896 OTU 9 seqs
prokMSA_id:2728 AF050564 clone WCHB1-43
prokMSA_id:2740 AF050562 clone WCHB1-05
prokMSA_id:2741 AF050563 clone WCHB1-80
prokMSA_id:2742 AF050565 clone WCHB1-44
prokMSA_id:20651 AJ249108 SHA-56 
prokMSA_id:47263 AJ249100 SHA-24 
prokMSA_id:56469 AJ278174 SHD-245 
prokMSA_id:77298 AF524858 K-4b6 
prokMSA_id:77570 AF524862 K-5b9 
2.18.35296 OTU 2 seqs
prokMSA_id:63984 AJ412677 clone 131
prokMSA_id:64880 AJ412671 clone 31
2.18.372 OTU 1 seq
prokMSA_id:72140 AF419666 a1b007 
2.18.400 OTU 1 seq
prokMSA_id:42071 AJ387901 C1-28 clone C1-28
2.18.40860 OTU 2 seqs
prokMSA_id:80378 AY193181 Chloroflexi clone O1aA21 
prokMSA_id:80786 AY193183 Chloroflexi clone O1aA19 
2.18.41412 OTU 3 seqs
prokMSA_id:67536 AF234710 sludge H1 
prokMSA_id:67538 AF234691 sludge H19 
prokMSA_id:67539 AF234682 sludge A11b 
2.18.4399 OTU 1 seq
prokMSA_id:65433 AF513086 clone 11 
2.18.4467 OTU 1 seq
prokMSA_id:65453 AY102332 clone a13139 
2.18.4537 OTU 1 seq
prokMSA_id:65478 AJ278171 SHD-238 
2.18.4536 OTU 1 seq
prokMSA_id:65477 AJ278172 SHD-43 
2.18.4539 OTU 1 seq
prokMSA_id:65479 AJ278169 SHD-235 
2.18.5535 OTU 1 seq
prokMSA_id:34880 AF423186 Toluene-degrading methanogenic consortium Eub 6 
2.18.6343 OTU 1 seq
prokMSA_id:65692 AF507691 soil clone S041 
2.18.7400 OTU 1 seq
prokMSA_id:67028 AJ306799 clone SHD-249
2.18.7444 OTU 1 seq
prokMSA_id:67038 AJ306741 clone SHA-8
2.18.8242 OTU 1 seq
prokMSA_id:81557 AY216458 clone KM87 
2.18.8881 OTU 1 seq
prokMSA_id:22061 AF234688 sludge H5 
2.18.8961 OTU 1 seq
prokMSA_id:21437 AJ249113 SHA-105 
2.18.9180 OTU 1 seq
prokMSA_id:51584 AF391972 Thermal soil YNP1 
2.20 PLANCTOMYCES_AND_RELATIVES 280 seqs
2.20.1 PIRELLULA_GROUP 67 seqs
2.20.1.1 PIRELLULA_SCHLESNER_ISOLATES 35 seqs
2.20.1.1.11743 OTU 1 seq
prokMSA_id:2770 X81944 Pirellula sp. str. Schlesner 384
2.20.1.1.11728 OTU 1 seq
prokMSA_id:66934 AJ306765 clone SHA-6
2.20.1.1.11730 OTU 1 seq
prokMSA_id:2767 X81939 Pirellula sp. str. Schlesner 140
2.20.1.1.11790 OTU 1 seq
prokMSA_id:2799 AF027058 clone OPB6
2.20.1.1.11781 OTU 1 seq
prokMSA_id:2787 X81941 Pirellula sp. str. Schlesner 158
2.20.1.1.11775 OTU 1 seq
prokMSA_id:2784 AJ231171 str. 337
2.20.1.1.11788 OTU 1 seq
prokMSA_id:2793 X81945 Pirellula sp. str. Schlesner 139
2.20.1.1.11789 OTU 1 seq
prokMSA_id:2794 U81656 clone vadinBA30
2.20.1.1.11753 OTU 1 seq
prokMSA_id:2777 AJ231169 str. 529
2.20.1.1.11777 OTU 1 seq
prokMSA_id:2785 AJ231172 str. 567
2.20.1.1.11755 OTU 1 seq
prokMSA_id:2778 AJ231170 str. 610
2.20.1.1.11768 OTU 1 seq
prokMSA_id:2780 AF029078 Pirellula Pirellula clone 6N14
2.20.1.1.12104 OTU 1 seq
prokMSA_id:52599 AJ290172 planctomycete clone DSP18
2.20.1.1.12224 OTU 1 seq
prokMSA_id:2801 X81942 Pirellula sp. str. Schlesner 302
2.20.1.1.12227 OTU 1 seq
prokMSA_id:2805 AJ231177 str. 449
2.20.1.1.12222 OTU 1 seq
prokMSA_id:2800 X81943 Pirellula sp. str. Schlesner 382
2.20.1.1.12981 OTU 1 seq
prokMSA_id:37686 AF314429 PHOS-HE25 
2.20.1.1.13521 OTU 1 seq
prokMSA_id:75622 AJ534691 planctomycetales clone S15A-MN16
2.20.1.1.1562 OTU 1 seq
prokMSA_id:18704 AJ290182 planctomycete clone DSP25
2.20.1.1.17469 OTU 1 seq
prokMSA_id:62477 AF513966 planctomycete clone LA4-B39N 
2.20.1.1.18110 OTU 1 seq
prokMSA_id:40268 AJ431347 planctomycete isolate ikaite un-c21
2.20.1.1.20357 OTU 1 seq
prokMSA_id:33376 AF234760 sludge A17 
2.20.1.1.21026 OTU 1 seq
prokMSA_id:71342 AY114326 planctomycete clone LD1-PA40 
2.20.1.1.21879 OTU 1 seq
prokMSA_id:40762 AF453520 Pirellula sp. 797 
2.20.1.1.28247 OTU 2 seqs
prokMSA_id:2783 X81940 Pirellula sp. str. Schlesner 516
prokMSA_id:2786 AJ231173 str. 543
2.20.1.1.28243 OTU 2 seqs
prokMSA_id:2771 X81938 Pirellula sp. str. Schlesner 1
prokMSA_id:2776 AJ231168 str. 608
2.20.1.1.34267 OTU 2 seqs
prokMSA_id:80219 AF468238 clone ARKCH2Br2-73 
prokMSA_id:80863 AF468237 clone ARKCH2Br2-98 
2.20.1.1.42349 OTU 2 seqs
prokMSA_id:32475 AJ290181 planctomycete clone DSP28
prokMSA_id:44344 AJ290179 planctomycete clone DSP33
2.20.1.1.6828 OTU 1 seq
prokMSA_id:43467 AJ290169 planctomycete clone DSP15
2.20.1.1.926 OTU 1 seq
prokMSA_id:25864 AJ290171 planctomycete clone DSP08
2.20.1.1.9380 OTU 1 seq
prokMSA_id:20894 AJ290184 planctomycete clone DSP26
2.20.1.2 PIR.STALEYI_SUBGROUP 29 seqs
2.20.1.2.11145 OTU 1 seq
prokMSA_id:30167 AJ390484 soil PRR-47 
2.20.1.2.11724 OTU 1 seq
prokMSA_id:66932 AJ306767 clone SHA-87
2.20.1.2.12251 OTU 1 seq
prokMSA_id:2811 AJ231181 str. 116
2.20.1.2.12262 OTU 1 seq
prokMSA_id:2818 X81947 Pirellula sp. str. Schlesner 678
2.20.1.2.12277 OTU 1 seq
prokMSA_id:2821 AJ231182 str. 292
2.20.1.2.12232 OTU 1 seq
prokMSA_id:2808 X62912 Pirellula marina DSM 3645
2.20.1.2.1277 OTU 1 seq
prokMSA_id:71634 AF453519 Pirellula sp. SW16 
2.20.1.2.1350 OTU 1 seq
prokMSA_id:71672 AF453518 Pirellula sp. Apfist 
2.20.1.2.18487 OTU 1 seq
prokMSA_id:46904 AJ390443 soil PBS-II-13 
2.20.1.2.18805 OTU 1 seq
prokMSA_id:63229 AF523997 clone FW123 
2.20.1.2.27561 OTU 5 seqs
prokMSA_id:2809 AJ231179 str. 611
prokMSA_id:2810 AJ231180 str. 391
prokMSA_id:2813 X86388 Pirellula sp. ACM 3181
prokMSA_id:2815 X86391 Pirellula sp. str. AGA/M12
prokMSA_id:2816 X86390 Pirellula sp. str. AGA/M41
2.20.1.2.27641 OTU 2 seqs
prokMSA_id:2826 M34126 Pirellula staleyi ATCC 27377
prokMSA_id:35238 AF399914 Pirellula staleyi strain ATCC 35122 
2.20.1.2.30201 OTU 3 seqs
prokMSA_id:38299 AJ390475 soil PRR-1B 
prokMSA_id:46511 AJ390478 soil PRR-7 
prokMSA_id:51628 AJ390483 soil PRR-14 
2.20.1.2.41749 OTU 2 seqs
prokMSA_id:2812 X86387 Pirellula sp. ACM 3180
prokMSA_id:2814 X86389 Pirellula sp. str. AGA/C41
2.20.1.2.42569 OTU 3 seqs
prokMSA_id:43734 AB062813 clone:BCf2-25
prokMSA_id:77713 AB089118 Planctomycetales clone:Rs-E96
prokMSA_id:78220 AB089117 Planctomycetales clone:Rs-A17
2.20.1.2.5549 OTU 1 seq
prokMSA_id:27673 AF234702 sludge A1 
2.20.1.2.7754 OTU 1 seq
prokMSA_id:73686 AF445727 Planctomycetales clone SM2F01 
2.20.1.2.8503 OTU 1 seq
prokMSA_id:50882 AF234735 sludge A8 
2.20.1.2.9551 OTU 1 seq
prokMSA_id:28765 AJ252628 Agricultural soil clone SC-I-28 
2.20.1.3 ENVIRONMENTAL_CLONE_AGG8_SUBGROUP 3 seqs
2.20.1.3.12291 OTU 1 seq
prokMSA_id:2830 L10942 marine snow associated clone agg8
2.20.1.3.27669 OTU 2 seqs
prokMSA_id:2833 AF029076 Pirellula Pirellula clone 5H12
prokMSA_id:2834 AF029077 Pirellula Pirellula clone 6O13
2.20.2 PLANCTOMYCES_GROUP 36 seqs
2.20.2.1 PLN.LIMNOPHILUS_SUBGROUP 16 seqs
2.20.2.1.10881 OTU 1 seq
prokMSA_id:29509 AJ290177 planctomycete clone DSP01
2.20.2.1.11331 OTU 1 seq
prokMSA_id:75344 AJ534692 planctomycetales clone S15A-MN17
2.20.2.1.11726 OTU 1 seq
prokMSA_id:66933 AJ306766 clone SHA-43
2.20.2.1.12217 OTU 1 seq
prokMSA_id:44762 AF445715 Planctomycetales clone SM2B12 
2.20.2.1.12312 OTU 1 seq
prokMSA_id:2840 AJ231189 Planctomyces 599 str. 599
2.20.2.1.12314 OTU 1 seq
prokMSA_id:2843 AJ241009 clone Sva0503
2.20.2.1.18037 OTU 1 seq
prokMSA_id:63103 AY093476 clone MB-C2-105 
2.20.2.1.18035 OTU 1 seq
prokMSA_id:63101 AY093482 clone MB-C2-147 
2.20.2.1.27671 OTU 2 seqs
prokMSA_id:2838 X81951 Planctomyces sp. str. Schlesner 638
prokMSA_id:2841 X81950 Planctomyces sp. str. Schlesner 642
2.20.2.1.28105 OTU 3 seqs
prokMSA_id:2845 X62911 Planctomyces limnophilus ATCC 43296
prokMSA_id:2846 AJ231187 Planctomyces 287 str. 287
prokMSA_id:2847 AJ231188 Planctomyces 282 str. 282
2.20.2.1.29925 OTU 2 seqs
prokMSA_id:40021 AJ401122 verrucomicrobium DEV036 clone DEV036
prokMSA_id:46265 AJ401120 verrucomicrobium DEV050 clone DEV050
2.20.2.1.9454 OTU 1 seq
prokMSA_id:36579 AJ290168 planctomycete clone DSP14
2.20.2.2 PLN.MARIS_SUBGROUP 20 seqs
2.20.2.2.12327 OTU 1 seq
prokMSA_id:2851 AJ231184 Planctomyces maris DSM 8797
2.20.2.2.12328 OTU 1 seq
prokMSA_id:2853 AF029079 Planctomyces Planctomyces clone 7F15
2.20.2.2.12320 OTU 1 seq
prokMSA_id:2849 X81952 Planctomyces sp. str. Schlesner 130
2.20.2.2.12335 OTU 1 seq
prokMSA_id:2859 AJ231186 Planctomyces 248 str. 248
2.20.2.2.12331 OTU 1 seq
prokMSA_id:2856 X81956 Planctomyces sp. str. Schlesner 668
2.20.2.2.12364 OTU 1 seq
prokMSA_id:2871 AB015527 Planctomyces sp. str. BD1-23
2.20.2.2.12349 OTU 1 seq
prokMSA_id:2861 X81955 Planctomyces sp. str. Schlesner 664
2.20.2.2.17468 OTU 1 seq
prokMSA_id:62476 AF513967 planctomycete clone LA4-B40N 
2.20.2.2.18510 OTU 1 seq
prokMSA_id:46917 AJ252614 Agricultural soil clone SC-I-11 
2.20.2.2.18900 OTU 1 seq
prokMSA_id:33193 AJ224943 mixed culture isolate Koll-18
2.20.2.2.21811 OTU 1 seq
prokMSA_id:34174 AJ307950 mRNA clone sipK18
2.20.2.2.28148 OTU 2 seqs
prokMSA_id:2857 AJ231190 Planctomyces brasiliensis DSM 5305
prokMSA_id:2860 X85249 Planctomyces sp. str. AGA/M18
2.20.2.2.28168 OTU 2 seqs
prokMSA_id:2862 X81953 Planctomyces sp. str. Schlesner 269
prokMSA_id:2863 AJ231185 Planctomyces 423 str. 423
2.20.2.2.3145 OTU 1 seq
prokMSA_id:50220 AJ290193 planctomycete clone DSP32
2.20.2.2.32196 OTU 2 seqs
prokMSA_id:36768 AF234752 sludge A24 
prokMSA_id:48540 AF234749 sludge H28 
2.20.2.2.5184 OTU 1 seq
prokMSA_id:42638 AJ290183 planctomycete clone DSP29
2.20.2.2.9628 OTU 1 seq
prokMSA_id:52232 AF316776 Crater Lake CL500-4 
2.20.3 ISOSPHAERA_GROUP 40 seqs
2.20.3.1 ISO.PALLIDA_SUBGROUP 17 seqs
2.20.3.1.11919 OTU 1 seq
prokMSA_id:53180 AF244750 Nostocoida limicola III strain Ben223 
2.20.3.1.12376 OTU 1 seq
prokMSA_id:2885 X81960 Isosphaera sp. str. Schlesner 657
2.20.3.1.12375 OTU 1 seq
prokMSA_id:2884 AJ231195 Isosphaera pallida DSM 9630
2.20.3.1.12368 OTU 1 seq
prokMSA_id:2879 X81958 Isosphaera sp. str. Schlesner 666
2.20.3.1.12366 OTU 1 seq
prokMSA_id:2878 AJ231192 str. 394
2.20.3.1.12365 OTU 1 seq
prokMSA_id:2877 X81959 Isosphaera sp. str. Schlesner 640
2.20.3.1.13311 OTU 1 seq
prokMSA_id:46130 AF234712 sludge A19 
2.20.3.1.14068 OTU 1 seq
prokMSA_id:45617 AF239692 Isosphaera-like str. C2-3 
2.20.3.1.1464 OTU 1 seq
prokMSA_id:33768 AF244751 Nostocoida limicola III strain Ben224 
2.20.3.1.16222 OTU 1 seq
prokMSA_id:24367 AJ292682 WD287 clone WD287
2.20.3.1.18804 OTU 1 seq
prokMSA_id:63228 AF523999 clone FW26 
2.20.3.1.24821 OTU 2 seqs
prokMSA_id:16557 AF244749 Nostocoida limicola III strain Ben222 
prokMSA_id:51778 AF244752 Nostocoida limicola III strain Ben225 
2.20.3.1.28207 OTU 2 seqs
prokMSA_id:2881 AJ231193 str. 563
prokMSA_id:31175 AF239699 Isosphaera-like str. CJuql1 
2.20.3.1.4072 OTU 1 seq
prokMSA_id:20269 AF244748 Nostocoida limicola III strain Ben220 
2.20.3.1.4933 OTU 1 seq
prokMSA_id:20352 AJ252623 Agricultural soil clone SC-I-20 
2.20.3.2 MOUNT_COOT-THA_ENVIRONMENTAL_CLONES_I 6 seqs
2.20.3.2.12378 OTU 1 seq
prokMSA_id:2887 X64376 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 
2.20.3.2.12379 OTU 1 seq
prokMSA_id:2888 X64377 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 
2.20.3.2.219 OTU 1 seq
prokMSA_id:17920 AF465657 planctomycete YNPRH54A 
2.20.3.2.2837 OTU 1 seq
prokMSA_id:42389 AF234727 sludge A12 
2.20.3.2.9288 OTU 1 seq
prokMSA_id:74478 AF234744 sludge A35 
2.20.3.2.9672 OTU 1 seq
prokMSA_id:22171 AF316775 Crater Lake CL500-52 
2.20.3.3 GMT.OBSCURIGLOBUS_SUBGROUP 17 seqs
2.20.3.3.11861 OTU 1 seq
prokMSA_id:22404 AF239693 Gemmata-like str. CJuql4 
2.20.3.3.12393 OTU 1 seq
prokMSA_id:2897 X81957 Gemmata obscuriglobus str. Schlesner 633
2.20.3.3.12394 OTU 1 seq
prokMSA_id:2899 AF121889 clone 2BP-58
2.20.3.3.13844 OTU 1 seq
prokMSA_id:60607 AF407691 clone R38 
2.20.3.3.13987 OTU 1 seq
prokMSA_id:22723 AF312220 Pietermaritzburg Y14-6 
2.20.3.3.14025 OTU 1 seq
prokMSA_id:23399 AF239696 Gemmata-like str. JW11-2f5 
2.20.3.3.15470 OTU 1 seq
prokMSA_id:75955 AY168744 clone HC-35 
2.20.3.3.18803 OTU 1 seq
prokMSA_id:63227 AF523998 clone FW101 
2.20.3.3.28230 OTU 3 seqs
prokMSA_id:2892 AJ231191 Gemmata obscuriglobus DSM 5831
prokMSA_id:2893 X85248 Gemmata obscuriglobus ACM 2246
prokMSA_id:2895 X56305 Gemmata obscuriglobus str. UQM 2246 ACM 2224
2.20.3.3.29548 OTU 3 seqs
prokMSA_id:38228 AJ290185 planctomycete clone DSP16
prokMSA_id:39203 AJ290178 planctomycete clone DSP31
prokMSA_id:46177 AJ290180 planctomycete clone DSP21
2.20.3.3.30523 OTU 3 seqs
prokMSA_id:41796 AF239697 Gemmata-like str. JW9-3f1 
prokMSA_id:42240 AF239698 Gemmata-like str. Soil9 
prokMSA_id:52302 AF239694 Gemmata-like str. JW3-8s0 
2.20.4 ENVIRONMENTAL_CLONE_AGG27 1 seq
2.20.4.12941 OTU 1 seq
prokMSA_id:2910 L10943 marine snow associated clone agg27
2.20.5 ENVIRONMENTAL_CLONE_A36O_GROUP 1 seq
2.20.5.18621 OTU 1 seq
prokMSA_id:39730 AF407207 clone GIF19 
2.20.6 CHLAMYDOPHILA_SUBDIVISION 134 seqs
2.20.6.1 ENVIRONMENTAL_CLONE_WCHB1-58_GROUP 1 seq
2.20.6.1.6051 OTU 1 seq
prokMSA_id:35504 AF316799 Crater Lake CL500-94 
2.20.6.2 CHLAMYDOPHILA_GROUP 133 seqs
2.20.6.2.2 SMK.NEGEVENSIS_SUBGROUP 33 seqs
2.20.6.2.2.12970 OTU 1 seq
prokMSA_id:2936 AF042496 Waddlia chondrophila str. WSU 86/1044
2.20.6.2.2.12965 OTU 1 seq
prokMSA_id:2932 AF083615 unnamed organism
2.20.6.2.2.12964 OTU 1 seq
prokMSA_id:2931 AF083614 unnamed organism
2.20.6.2.2.13746 OTU 1 seq
prokMSA_id:67842 AY082465 Chlamydiales clone 44a-B1-34 
2.20.6.2.2.14998 OTU 1 seq
prokMSA_id:31309 AF448722 Chlamydiales clone cvE6 complete 
2.20.6.2.2.15372 OTU 1 seq
prokMSA_id:39277 AF364561 Chlamydiales clone P-2 
2.20.6.2.2.15725 OTU 1 seq
prokMSA_id:23644 AF308693 corvenA4 
2.20.6.2.2.16087 OTU 1 seq
prokMSA_id:45999 AF364563 Chlamydiales clone P-3 
2.20.6.2.2.16182 OTU 1 seq
prokMSA_id:24341 AF177275 Neochlamydia hartmannellae 
2.20.6.2.2.16302 OTU 1 seq
prokMSA_id:17182 AF400484 Endosymbiont of Bemisia tabaci biotype Jatropha 
2.20.6.2.2.17551 OTU 1 seq
prokMSA_id:54620 AF346001 Waddlia chondrophila complete ; and 23S 
2.20.6.2.2.19423 OTU 1 seq
prokMSA_id:33207 AF448723 Chlamydiales clone cvE9 complete 
2.20.6.2.2.21993 OTU 12 seqs
prokMSA_id:22160 AF364577 Chlamydiales clone P-11 
prokMSA_id:24629 AF364562 Chlamydiales clone P-13 
prokMSA_id:25769 AF364571 Chlamydiales clone P-17 
prokMSA_id:26915 AF364573 Chlamydiales clone P-19 
prokMSA_id:30860 AF364567 Chlamydiales clone P-15 
prokMSA_id:31998 AF364574 Chlamydiales clone P-8 
prokMSA_id:33726 AF364566 Chlamydiales clone P-14 
prokMSA_id:34118 AF364576 Chlamydiales clone P-10 
prokMSA_id:40042 AF364570 Chlamydiales clone P-16 
prokMSA_id:43225 AF364560 Chlamydiales clone P-1 
prokMSA_id:43574 AF364572 Chlamydiales clone P-18 
prokMSA_id:50356 AF364578 Chlamydiales clone P-12 
2.20.6.2.2.30243 OTU 2 seqs
prokMSA_id:2920 Y07556 Parachlamydia acanthamoebae
prokMSA_id:49792 AF366365 Parachlamydia sp. Hall's coccus 
2.20.6.2.2.30246 OTU 2 seqs
prokMSA_id:2930 AF098330 unnamed organism
prokMSA_id:2933 AF083616 unnamed organism
2.20.6.2.2.30247 OTU 2 seqs
prokMSA_id:2934 Z. L27666 Simkania negevensis str
prokMSA_id:2935 Z. U68460 Simkania negevensis str
2.20.6.2.2.31669 OTU 3 seqs
prokMSA_id:18839 AF364569 Chlamydiales clone P-7 
prokMSA_id:38880 AF364564 Chlamydiales clone P-4 
prokMSA_id:44515 AF364575 Chlamydiales clone P-9 
2.20.6.2.3 CHLAMYDOPHILA_SUBGROUP 100 seqs
2.20.6.2.3.18272 OTU 1 seq
prokMSA_id:25273 AF364568 Chlamydiales clone P-6 
2.20.6.2.3.32720 OTU 3 seqs
prokMSA_id:3024 U73110 Chlamydia suis str. S45
prokMSA_id:3025 U68420 Chlamydia suis str. R22
prokMSA_id:72345 U73110 Chlamydia suis strain S45 complete ; and 23S 
2.20.6.2.3.32833 OTU 11 seqs
prokMSA_id:3027 D88317 Chlamydophila pecorum str. Bo/E58
prokMSA_id:3029 U73785 Chlamydophila pecorum str. Bo/E8
prokMSA_id:3030 D85714 Chlamydia pecorum str. Bo/Shizuoka
prokMSA_id:3031 D85715 Chlamydia pecorum str. Bo/Maeda
prokMSA_id:3032 D85716 Chlamydophila pecorum str. Ov/IPA ATCC VR629
prokMSA_id:3033 D85717 Chlamydia pecorum str. Koala II
prokMSA_id:3034 AB001774 Chlamydia pecorum str. Bo-1485
prokMSA_id:3035 AB001775 Chlamydia pecorum str. Bo-Maeda
prokMSA_id:3036 AB001776 Chlamydia pecorum str. Bo-Yokohama
prokMSA_id:3037 AB001777 Chlamydia pecorum str. SPV789
prokMSA_id:36991 E17343 Chlamydia pecorum Bo/Maeda 
2.20.6.2.3.33310 OTU 13 seqs
prokMSA_id:2954 M59178 Chlamydia trachomatis str. 434
prokMSA_id:2955 U68443 Chlamydia trachomatis str. L2/434/BU ATCC VR-902B
prokMSA_id:2956 D85722 Chlamydia trachomatis str. E/UW-5/Cx
prokMSA_id:3009 D89067 Chlamydia trachomatis str. HAR-13
prokMSA_id:3010 D88316 Chlamydia trachomatis str. A.SA-1.OT
prokMSA_id:3011 D85719 Chlamydia trachomatis str. B/TW-5/OT
prokMSA_id:3012 D85720 Chlamydia trachomatis str. C/TW-3/OT
prokMSA_id:3013 D85721 Chlamydia trachomatis str. D/TW-3/CX
prokMSA_id:3014 AE001345 Chlamydia trachomatis str. D/UW-3/CX
prokMSA_id:3015 AE001347 Chlamydia trachomatis str. D/UW-3/CX
prokMSA_id:49665 E17344 Chlamydia trachomatis A/Har-13T 
prokMSA_id:50790 NC_000117 Chlamydia trachomatis complete genome
prokMSA_id:52481 AE001273 Chlamydia trachomatis complete genome
2.20.6.2.3.33397 OTU 8 seqs
prokMSA_id:2945 U73784 Chlamydophila pneumoniae str. N16
prokMSA_id:2949 U73783 Chlamydophila pneumoniae str. P1Parola
prokMSA_id:2951 AF139200 Chlamydophila Chlamyophila cf. pneumoniae CPXT1 str. CPXT1
prokMSA_id:2952 U68426 Chlamydophila pneumoniae str. N16
prokMSA_id:3006 Z49873 Chlamydophila pneumoniae
prokMSA_id:3007 AE001668 Chlamydophila pneumoniae str. CWL029
prokMSA_id:3008 Z49874 Chlamydophila pneumoniae
prokMSA_id:49993 NC_000922 Chlamydophila pneumoniae CWL029 complete genome
2.20.6.2.3.34544 OTU 61 seqs
prokMSA_id:2937 D85701 Chlamydophila felis str. Fe/Pn-1 ATCC VR120
prokMSA_id:2938 D85702 Chlamydophila felis str. Fe/145
prokMSA_id:2939 D85703 Chlamydophila felis str. Fe/B166
prokMSA_id:2940 D85704 Chlamydophila felis str. Fe/C164
prokMSA_id:2941 D85705 Chlamydophila felis str. Fe/C454
prokMSA_id:2942 D85706 Chlamydophila felis str. Fe/Cello
prokMSA_id:2943 D85707 Chlamydophila felis str. Fe/C429
prokMSA_id:2944 AB001785 Chlamydophila felis str. Fe-145
prokMSA_id:2946 Z49872 Chlamydophila psittaci
prokMSA_id:2959 D85709 Chlamydophila abortus str. Ov/B577 ATCC VR-656
prokMSA_id:2960 D85710 Chlamydia psittaci str. Prk/Daruma
prokMSA_id:2961 AB001809 Chlamydia psittaci str. Prk46
prokMSA_id:2962 AB001810 Chlamydia psittaci str. Prk48
prokMSA_id:2963 AB001811 Chlamydia psittaci str. Prk49
prokMSA_id:2964 AB001778 Chlamydophila psittaci str. 6BC ATCC VR-125
prokMSA_id:2965 D85711 Chlamydia psittaci str. Hu/Borg ATCC VR601
prokMSA_id:2966 AB001779 Chlamydia psittaci str. Bud-1
prokMSA_id:2967 AB001780 Chlamydia psittaci str. Bud-11F from a budgerigar
prokMSA_id:2968 AB001781 Chlamydia psittaci str. Bud-16F from a budgerigar
prokMSA_id:2969 AB001782 Chlamydia psittaci str. Bud-5695 from a budgerigar
prokMSA_id:2970 AB001784 Chlamydia psittaci str. Cal-10 ATCC VR-122
prokMSA_id:2971 AB001786 Chlamydia psittaci str. GCP-1
prokMSA_id:2972 AB001787 Chlamydia psittaci str. Itoh
prokMSA_id:2973 AB001788 Chlamydia psittaci str. Izawa-1 from a budgerigar
prokMSA_id:2974 AB001789 Chlamydia psittaci str. Koala
prokMSA_id:2975 AB001790 Chlamydia psittaci str. Mizuno-1F from a budgerigar
prokMSA_id:2976 AB001791 Chlamydia psittaci str. Ohmiya
prokMSA_id:2977 AB001792 Chlamydia psittaci str. P1015 from a feral pigeon
prokMSA_id:2978 AB001793 Chlamydia psittaci str. P1041 from a feral pigeon
prokMSA_id:2979 AB001794 Chlamydia psittaci str. P1305 from a feral pigeon
prokMSA_id:2980 AB001795 Chlamydia psittaci str. P1307 from a feral pigeon
prokMSA_id:2981 AB001796 Chlamydia psittaci str. P1313 from a feral pigeon
prokMSA_id:2982 AB001797 Chlamydia psittaci str. P1315 from a feral pigeon
prokMSA_id:2983 AB001798 Chlamydia psittaci str. P1321 from a feral pigeon
prokMSA_id:2984 AB001799 Chlamydia psittaci str. P1605 from a feral pigeon
prokMSA_id:2985 AB001800 Chlamydia psittaci str. P1646 from a feral pigeon
prokMSA_id:2986 AB001801 Chlamydia psittaci str. P1888 from a feral pigeon
prokMSA_id:2987 AB001802 Chlamydia psittaci str. PgAu46
prokMSA_id:2988 AB001803 Chlamydophila psittaci PCM 131
prokMSA_id:2989 AB001804 Chlamydia psittaci PCM 27
prokMSA_id:2990 AB001805 Chlamydia psittaci PCM 30
prokMSA_id:2991 AB001806 Chlamydia psittaci PCM 44
prokMSA_id:2992 AB001807 Chlamydia psittaci PCM 55
prokMSA_id:2993 AB001808 Chlamydia psittaci PCM 9
prokMSA_id:2994 AB001812 Chlamydia psittaci str. Sugimoto-F from a cockatiel
prokMSA_id:2995 AB001813 Chlamydia psittaci str. Sugawara from a budgerigar
prokMSA_id:2996 AB001814 Chlamydia psittaci str. T3
prokMSA_id:2997 AB001815 Chlamydia psittaci str. T4
prokMSA_id:2998 AB001816 Chlamydia psittaci str. Tk-Cal
prokMSA_id:3001 Z49871 Chlamydophila psittaci
prokMSA_id:3002 D85708 Chlamydophila caviae str. Gp/Ic; GPIC ATCC VR813
prokMSA_id:3016 M13769 Chlamydophila psittaci str. 6BC ATCC VR-125
prokMSA_id:3017 D85712 Chlamydia psittaci str. Frt-Hu/Ca110
prokMSA_id:3018 D85713 Chlamydia psittaci str. Prt/GCP-1
prokMSA_id:3019 U68419 Chlamydophila psittaci str. turkey strain NJ1; Tk-NJ
prokMSA_id:3021 AB001783 Chlamydophila abortus str. B577 ATCC VR-656
prokMSA_id:3022 U76710 Chlamydophila abortus str. EBA
prokMSA_id:20912 E17342 Chlamydia psittaci Fe/Pn-1 
prokMSA_id:25134 E17341 Chlamydia psittaci Gp/Ic 
prokMSA_id:44021 E17339 Chlamydia psittaci Prt/GCP1 
prokMSA_id:70709 U68447 Chlamydophila psittaci strain 6BC and 23S operon complete 
2.20.6.2.3.40554 OTU 3 seqs
prokMSA_id:3041 D85718 Chlamydia muridarum str. MoPn/Wiess-Nigg
prokMSA_id:3042 U68437 Chlamydia muridarum str. SFPD
prokMSA_id:19114 E17345 Chlamydia trachomatis MoPn/Weiss-Nigg 
2.20.7 MOUNT_COOT-THA_ENVIRONMENTAL_CLONES_II 1 seq
2.20.7.4047 OTU 1 seq
prokMSA_id:43121 AJ401123 verrucomicrobium DEV031 clone DEV031
2.21 CYANOBACTERIA_AND_CHLOROPLASTS 889 seqs
2.21.1 CYANOBACTERIA 662 seqs
2.21.1.1 OSCILLATORIA_GROUP 119 seqs
2.21.1.1.11004 OTU 1 seq
prokMSA_id:36764 AF445719 cyanobacterium clone SM2C12 
2.21.1.1.11676 OTU 1 seq
prokMSA_id:74791 AF132933 Oscillatoria sancta 
2.21.1.1.12621 OTU 1 seq
prokMSA_id:75533 AY168749 clone HC-61 
2.21.1.1.19221 OTU 1 seq
prokMSA_id:77762 AB089123 clone:Rs-H34
2.21.1.1.19869 OTU 1 seq
prokMSA_id:47726 AB039015 Oscillatoria sancta 
2.21.1.1.21267 OTU 1 seq
prokMSA_id:62920 AF448081 Synechococcus sp. PCC 6312 
2.21.1.1.27915 OTU 66 seqs
prokMSA_id:3066 X84811 "Oscillatoria agardhii" str. CYA 18
prokMSA_id:3071 AJ132250 Planktothrix rubescens str. BC-Pla 9401
prokMSA_id:3072 AJ132251 Planktothrix rubescens str. BC-Pla 9303
prokMSA_id:16819 AJ133167 Oscillatoria sp. strain 49 
prokMSA_id:25778 AJ133169 Oscillatoria sp. strain CYA128/R 
prokMSA_id:33534 AJ133166 Oscillatoria sp. strain CYA126 
prokMSA_id:48691 AJ133165 Oscillatoria sp. strain 28 
prokMSA_id:55281 AB045943 Planktothrix agardhii strain: NIVA CYA 68
prokMSA_id:55938 AB045904 Planktothrix agardhii strain: C1-12
prokMSA_id:56079 AB045900 Planktothrix agardhii strain: CCAP 1459/21
prokMSA_id:58438 AB045959 Planktothrix rubescens strain: NIES 610
prokMSA_id:58441 AB045957 Planktothrix agardhii strain: NIES 595
prokMSA_id:58442 AB045956 Planktothrix agardhii strain: NIES 594
prokMSA_id:58443 AB045955 Planktothrix agardhii strain: NIES 205
prokMSA_id:58444 AB045954 Planktothrix agardhii strain: NIES 204
prokMSA_id:58446 AB045949 Planktothrix agardhii strain: NIVA CYA 91
prokMSA_id:58447 AB045948 Planktothrix rubescens strain: NIVA CYA 90
prokMSA_id:58448 AB045952 Planktothrix agardhii strain: NIVA CYA 9
prokMSA_id:58449 AB045947 Planktothrix agardhii strain: NIVA CYA 88/3
prokMSA_id:58450 AB045951 Planktothrix rubescens strain: NIVA CYA 98
prokMSA_id:58451 AB045950 Planktothrix rubescens strain: NIVA CYA 97/5
prokMSA_id:58452 AB045946 Planktothrix rubescens strain: NIVA CYA 87
prokMSA_id:58453 AB045945 Planktothrix rubescens strain: NIVA CYA 85
prokMSA_id:58454 AB045944 Planktothrix rubescens strain: NIVA CYA 73
prokMSA_id:58455 AB045940 Planktothrix agardhii strain: NIVA CYA 61/1
prokMSA_id:58456 AB045941 Planktothrix agardhii strain: NIVA CYA 64/6
prokMSA_id:58457 AB045939 Planktothrix agardhii strain: NIVA CYA 59
prokMSA_id:58458 AB045942 Planktothrix agardhii strain: NIVA CYA 65
prokMSA_id:58459 AB045937 Planktothrix rubescens strain: NIVA CYA 55
prokMSA_id:58460 AB045938 Planktothrix agardhii strain: NIVA CYA 56/3
prokMSA_id:58461 AB045935 Planktothrix agardhii strain: NIVA CYA 34
prokMSA_id:58462 AB045936 Planktothrix rubescens strain: NIVA CYA 35
prokMSA_id:58463 AB045934 Planktothrix rubescens strain: NIVA CYA 320
prokMSA_id:58464 AB045933 Planktothrix agardhii strain: NIVA CYA 313
prokMSA_id:58465 AB045932 Planktothrix agardhii strain: NIVA CYA 30
prokMSA_id:58466 AB045931 Planktothrix agardhii strain: NIVA CYA 29
prokMSA_id:58467 AB045930 Planktothrix agardhii strain: NIVA CYA 297
prokMSA_id:58468 AB045928 Planktothrix agardhii strain: NIVA CYA 229
prokMSA_id:58470 AB045927 Planktothrix agardhii strain: NIVA CYA 21
prokMSA_id:58471 AB045926 Planktothrix rubescens strain: NIVA CYA 1
prokMSA_id:58472 AB045925 Planktothrix rubescens strain: NIVA CYA 18
prokMSA_id:58473 AB045923 Planktothrix agardhii strain: NIVA CYA 15
prokMSA_id:58474 AB045924 Planktothrix agardhii strain: NIVA CYA 168
prokMSA_id:58476 AB045920 Planktothrix rubescens strain: NIVA CYA 13
prokMSA_id:58477 AB045921 Planktothrix rubescens strain: NIVA CYA 151
prokMSA_id:58478 AB045919 Planktothrix agardhii strain: NIVA CYA 137
prokMSA_id:58479 AB045918 Planktothrix agardhii strain: NIVA CYA 133
prokMSA_id:58480 AB045917 Planktothrix rubescens strain: NIVA CYA 129
prokMSA_id:58481 AB045916 Planktothrix rubescens strain: NIVA CYA 128
prokMSA_id:58482 AB045915 Planktothrix agardhii strain: NIVA CYA 127
prokMSA_id:58483 AB045913 Planktothrix agardhii strain: NIVA CYA 11
prokMSA_id:58484 AB045914 Planktothrix agardhii strain: NIVA CYA 126
prokMSA_id:58485 AB045912 Planktothrix agardhii strain: NIVA CYA 117/3
prokMSA_id:58486 AB045911 Planktothrix agardhii strain: NIVA CYA 116
prokMSA_id:58487 AB045910 Planktothrix agardhii strain: NIVA CYA 10
prokMSA_id:58488 AB045909 Planktothrix rubescens strain: NIVA CYA 108
prokMSA_id:58489 AB045908 Planktothrix agardhii strain: NIVA CYA 105
prokMSA_id:58492 AB045902 Planktothrix agardhii strain: CCAP 1459/23
prokMSA_id:58493 AB045901 Planktothrix rubescens strain: CCAP 1459/22
prokMSA_id:58494 AB045899 Planktothrix agardhii strain: CCAP 1459/16
prokMSA_id:58495 AB045903 Planktothrix agardhii strain: CCAP 1459/36
prokMSA_id:58496 AB045898 Planktothrix agardhii strain: CCAP 1459/15
prokMSA_id:58497 AB045896 Planktothrix agardhii starin:CCAP 1459/11A
prokMSA_id:72966 AJ133185 Oscillatoria sp. strain 2 
prokMSA_id:73793 AJ133168 Oscillatoria sp. strain CYA127 
prokMSA_id:80934 AB074507 Oscillatoria agardhii 
2.21.1.1.32143 OTU 6 seqs
prokMSA_id:3060 AF132772 Synechococcus ATCC700243 str. C1 ATCC 700243
prokMSA_id:3063 D83715 Synechococcus elongatus
prokMSA_id:40063 AF216942 Synechococcus PCC6716 
prokMSA_id:54965 AF216943 Synechococcus PCC6717 
prokMSA_id:55947 NC_004113 Thermosynechococcus elongatus BP-1 complete genome
prokMSA_id:61266 AP005376 Thermosynechococcus elongatus BP-1 complete genome section 8
2.21.1.1.33886 OTU 3 seqs
prokMSA_id:26990 AB039014 Oscillatoria acuminata 
prokMSA_id:49230 AF218375 Oscillatoria priestleyii 
prokMSA_id:51758 AJ431339 cyanobacterium isolate ikaite un-c15
2.21.1.1.3587 OTU 1 seq
prokMSA_id:58155 AF544207 Rumen YS2 
2.21.1.1.39018 OTU 10 seqs
prokMSA_id:3059 X70769 Arthrospira sp. PCC 8005
prokMSA_id:3062 X75044 Arthrospira sp. PCC 7345
prokMSA_id:3064 AJ000714 Lyngbya confervoides PCC 7419
prokMSA_id:35094 AF260510 Arthrospira fusiformis 
prokMSA_id:40937 AB039013 Lyngbya aestuarii 
prokMSA_id:69038 AF329392 Arthrospira sp. FACHB438 complete ; tRNA-Ile and tRNA-Ala ge
prokMSA_id:69039 AF329391 Arthrospira sp. FACHB439 complete ; tRNA-Ile and tRNA-Ala ge
prokMSA_id:70913 X70769 Arthrospira sp. strain PCC8005
prokMSA_id:71484 X75044 Arthrospira sp. genes tRNA-Ile tRNA-Ala 23S 
prokMSA_id:80667 AB074508 Spirulina platensis 
2.21.1.1.40543 OTU 7 seqs
prokMSA_id:3048 X70767 Trichodesmium sp. NIBB 1067
prokMSA_id:3050 AF091322 Trichodesmium hildebrandtii str. puff
prokMSA_id:3052 AF013030 Trichodesmium erythraeum
prokMSA_id:3053 AF013029 Trichodesmium tenue
prokMSA_id:3054 AF013028 Trichodesmium contortum
prokMSA_id:3055 AF013027 Trichodesmium thiebautii
prokMSA_id:59107 AF518770 Trichodesmium havanum str. F34-5 
2.21.1.1.41569 OTU 2 seqs
prokMSA_id:56026 AB045965 Planktothrix pseudagardhii strain: T19-6'-6
prokMSA_id:58432 AB045968 Planktothrix pseudagardhii strain: T1-8-4
2.21.1.1.42245 OTU 2 seqs
prokMSA_id:34024 AF284803 Microcoleus vaginatus PCC 9802 
prokMSA_id:80595 AB074509 Oscillatoria sp. PCC 7112 
2.21.1.1.42384 OTU 7 seqs
prokMSA_id:55562 AB045966 Planktothrix pseudagardhii strain: T19-6'-8
prokMSA_id:55697 AB045971 Planktothrix mougeotii strain: TR1-5
prokMSA_id:58430 AB045972 Planktothrix mougeotii strain: TR2-4
prokMSA_id:58431 AB045970 Planktothrix mougeotii strain: TK5-1
prokMSA_id:58433 AB045969 Planktothrix mougeotii strain: TK4-5
prokMSA_id:58475 AB045922 Planktothrix pseudagardhii strain: NIVA CYA 153
prokMSA_id:58490 AB045907 Planktothrix pseudagardhii strain: CW4-5
2.21.1.1.42454 OTU 4 seqs
prokMSA_id:56232 AB045967 Planktothricoides raciborskii strain: T1-6-2
prokMSA_id:58435 AB045964 Planktothricoides raciborskii strain: OR1-1
prokMSA_id:58439 AB045960 Planktothricoides raciborskii strain: NIES 207
prokMSA_id:58445 AB045953 Planktothricoides raciborskii strain: INBaOR
2.21.1.1.4734 OTU 1 seq
prokMSA_id:51024 AF218373 Phormidium subfuscum 
2.21.1.1.6268 OTU 1 seq
prokMSA_id:58440 AB045958 Planktothrix agardhii strain: NIES 596
2.21.1.1.6374 OTU 1 seq
prokMSA_id:58491 AB045906 Lyngbya hieronymusii var. hieronymusii strain: CN4-3
2.21.1.1.8964 OTU 1 seq
prokMSA_id:82269 AJ548503 Phormidium sp. ETS-05 isolate ETS-05
2.21.1.1.9267 OTU 1 seq
prokMSA_id:3082 X58359 "Oscillatoria williamsii" PCC 7105
2.21.1.2 NOSTOC_GROUP 199 seqs
2.21.1.2.15097 OTU 1 seq
prokMSA_id:60830 AF516734 Cylindrospermopsis raciborskii strain Brazil 2 
2.21.1.2.20313 OTU 1 seq
prokMSA_id:70663 AB045961 Oscillatoria princeps strain: NIVA CYA 150
2.21.1.2.21187 OTU 1 seq
prokMSA_id:70767 AF506242 Nostoc sp. 17 
2.21.1.2.27315 OTU 2 seqs
prokMSA_id:45088 AY034793 Hapalosiphon welwitschii 
prokMSA_id:80861 AB074505 Fischerella muscicola 
2.21.1.2.2874 OTU 1 seq
prokMSA_id:35188 AF218377 Lyngbya sp. UTCC296 
2.21.1.2.29653 OTU 3 seqs
prokMSA_id:3093 AF132779 "Calothrix desertica" PCC 7102
prokMSA_id:3097 X99213 "Calothrix D253"
prokMSA_id:33939 AJ133164 Calothrix sp. strain PCC7714 
2.21.1.2.32092 OTU 5 seqs
prokMSA_id:23035 AJ344558 Chroococcidiopsis cubana strain SAG 39.79
prokMSA_id:34564 AJ344553 Chroococcidiopsis sp. BB82.3 strain SAG 2024
prokMSA_id:41207 AB039005 Chroococcidiopsis thermalis 
prokMSA_id:72915 AJ344554 Chroococcidiopsis sp. BB84.1 strain SAG 2025
prokMSA_id:80235 AB074506 Chroococcidiopsis sp. PCC 7431 
2.21.1.2.37073 OTU 9 seqs
prokMSA_id:55937 AF506252 Nostoc sp. 'Nephroma parile cyanobiont 27' 
prokMSA_id:58838 AF506265 Nostoc sp. 'Nephroma resupinatum cyanobiont 40' 
prokMSA_id:58840 AF506264 Nostoc sp. 'Nephroma laevigatum cyanobiont 39' 
prokMSA_id:58845 AF506258 Nostoc sp. 'Nephroma helveticum cyanobiont 33' 
prokMSA_id:58852 AF506251 Nostoc sp. 'Nephroma parile cyanobiont 26' 
prokMSA_id:71529 AF506255 Nostoc sp. 'Parmeliella triptophylla cyanobiont 30' 
prokMSA_id:73348 AF506259 Nostoc sp. 'Lobaria cyanobiont 34' 
prokMSA_id:73487 AF506257 Nostoc sp. 'Nephroma parile cyanobiont 32' 
prokMSA_id:74222 AF506262 Nostoc sp. 'Nephroma helveticum cyanobiont 37' 
2.21.1.2.39635 OTU 4 seqs
prokMSA_id:43551 AJ293108 Anabaena planctonica strain 71
prokMSA_id:45965 AJ133160 Anabaena sp. strain A277 
prokMSA_id:56651 AF425995 Aphanizomenon sp. NH-5 
prokMSA_id:73220 AJ293110 Anabaena cf. cylindrica 133 strain 133
2.21.1.2.39842 OTU 8 seqs
prokMSA_id:56398 AF534685 Oscillatoria spongeliae isolate 516bg 
prokMSA_id:59100 AF534692 Oscillatoria spongeliae isolate 519bg 
prokMSA_id:59101 AF534690 Oscillatoria spongeliae isolate 523bg 
prokMSA_id:59104 AF534688 Oscillatoria spongeliae isolate 504bg 
prokMSA_id:59105 AF534686 Oscillatoria spongeliae isolate 511bg 
prokMSA_id:59106 AF534687 Oscillatoria spongeliae isolate 517bg 
prokMSA_id:59108 AF420446 Oscillatoria spongeliae 512bg 
prokMSA_id:59110 AF420445 Oscillatoria spongeliae 518bg 
2.21.1.2.41146 OTU 134 seqs
prokMSA_id:3091 AJ224447 Nodularia BCNOD9427 str. BCNOD9427
prokMSA_id:3092 X59559 Nostoc muscorum PCC 7120
prokMSA_id:3095 AB016520 "Anabaena variabilis" IAM M-3
prokMSA_id:3098 AF091150 "Anabaena cylindrica" str. NIES19 PCC 7122
prokMSA_id:3099 AF092504 Cylindrospermopsis raciborskii str. AWT205
prokMSA_id:3100 AJ006281 str. watersample from Lake Loosdrecht
prokMSA_id:3101 AF067818 Cylindrospermopsis raciborskii str. Solomon Dam Palm Island
prokMSA_id:3102 AF067819 Cylindrospermopsis raciborskii str. Solomon Dam Palm Island
prokMSA_id:19102 AF247578 Anabaena circinalis AWQC307C 
prokMSA_id:19178 AF247586 Anabaena circinalis AWT205B 
prokMSA_id:19362 AJ133181 Nodularia sp. strain PCC7804 
prokMSA_id:19855 AF247589 Anabaena circinalis AWQC131C 
prokMSA_id:20056 AF268019 Nodularia harveyana strain PCC7804 
prokMSA_id:20340 AY038034 Nodularia sp. PCC 9350 
prokMSA_id:20514 AF247581 Anabaena circinalis AWQC331C 
prokMSA_id:20681 AJ293123 Aphanizomenon flos-aquae var. Klebahnii strain 218
prokMSA_id:20684 AJ133152 Anabaena sp. strain 14 
prokMSA_id:20833 AJ293105 Anabaena solitaria strain 82
prokMSA_id:20887 AJ293124 Aphanizomenon gracile strain 219
prokMSA_id:21286 AJ293111 Anabaena compacta strain 189
prokMSA_id:21330 AJ293116 Anabaena spiroides strain PMC9403
prokMSA_id:21511 AF247577 Anabaena circinalis AWQC306A 
prokMSA_id:21891 AF247585 Anabaena circinalis AWT204A 
prokMSA_id:23120 AJ293131 Aphanizomenon flos-aquae strain NIES81
prokMSA_id:23731 AF247579 Anabaena circinalis AWQC310F 
prokMSA_id:23978 AF247573 Anabaena circinalis AWQC150A 
prokMSA_id:24012 AJ133161 Nostoc sp. strain 152 
prokMSA_id:24719 AF317628 Anabaena flos-aquae strain AWQC 264A 
prokMSA_id:24739 AF268021 Nodularia harveyana strain UTEX-B2093 
prokMSA_id:24903 AJ293103 Anabaena circinalis strain 123
prokMSA_id:24929 AF247584 Anabaena circinalis AWT001 
prokMSA_id:24971 AF268011 Nodularia spumigena strain NSOR12 
prokMSA_id:25149 AJ293107 Anabaena mendotae strain 57
prokMSA_id:28170 AF268013 Nodularia spumigena strain NSKR07 
prokMSA_id:28207 AJ293114 Anabaena cf. Lemmermannii 262 strain 262
prokMSA_id:28247 AF268020 Nodularia harveyana strain CDAC1983/300 
prokMSA_id:28360 AF317632 Aphanizomenon flos-aquae strain NIES81 
prokMSA_id:28828 AF247595 Anabaenopsis circularis NIES21 
prokMSA_id:29130 AF247593 Anabaena variabilis NIES23 
prokMSA_id:29506 AY038036 Cyanospira rippkae 
prokMSA_id:30002 AF247596 Anabaena flos-aquae NRC44-1 
prokMSA_id:30153 AF247575 Anabaena circinalis AWQC271C 
prokMSA_id:31078 AJ133151 Anabaena sp. strain 86 
prokMSA_id:31144 AY038035 Aphanizomenon flos-aquae 
prokMSA_id:31160 AJ293127 Aphanizomenon gracile strain PMC9402
prokMSA_id:32120 AJ293102 Anabaena flos-aquae strain 37
prokMSA_id:32123 AF268015 Nodularia spumigena strain NSGL02A10 
prokMSA_id:34133 AF268014 Nodularia spumigena strain NSOR10 
prokMSA_id:34506 AF268012 Nodularia spumigena strain NSBL05 
prokMSA_id:35407 AF247582 Anabaena circinalis AWQC332H 
prokMSA_id:35491 AF268009 Nodularia spumigena strain NSLA01 
prokMSA_id:35605 AJ133184 Nodularia sp. strain PCC73104/1 
prokMSA_id:36205 AF247591 Anabaena affinis NIES40 
prokMSA_id:36477 AF160256 Anabaena bergii 
prokMSA_id:37415 AJ293129 Aphanizomenon flos-aquae strain PMC9706
prokMSA_id:37515 AJ293106 Anabaena sp. 299 strain 299
prokMSA_id:37800 AF268006 Nodularia spumigena strain L575 
prokMSA_id:38208 AF247590 Anabaena flos-aquae AWQC112D 
prokMSA_id:39090 AF247587 Anabaena circinalis AWT02 
prokMSA_id:40148 AJ293122 Aphanizomenon flos-aquae var. Klebahnii strain 83
prokMSA_id:40662 AJ293115 Anabaena macrospora strain PMC9301
prokMSA_id:40671 AJ293112 Anabaena crassa strain 215
prokMSA_id:40783 AJ293109 Anabaena compacta strain 118
prokMSA_id:40979 AF268010 Nodularia spumigena strain NSOR04 
prokMSA_id:41035 AF247588 Anabaena circinalis NIES41 
prokMSA_id:41609 AY038032 Anabaena flos-aquae strain PCC 9302 
prokMSA_id:42144 AF247594 Anabaena solitaria NIES80 
prokMSA_id:42825 AF247576 Anabaena circinalis AWQC279B 
prokMSA_id:43633 AJ293117 Anabaena cf. Scheremetievi PMC9701 strain PMC9701
prokMSA_id:44376 AP003587 Nostoc sp. PCC 7120 complete genome section 7/19
prokMSA_id:44470 AF317629 Anabaena sp. PCC 7108 
prokMSA_id:44512 AF268007 Nodularia spumigena strain NSPH02 
prokMSA_id:45448 AF247583 Anabaena circinalis AWQC344B 
prokMSA_id:45521 AY038033 Anabaenopsis sp. PCC 9215 
prokMSA_id:46466 AB039002 Nodularia spumigena 
prokMSA_id:46727 AP003595 Nostoc sp. PCC 7120 complete genome section 15/19
prokMSA_id:46957 AF268022 Nodularia spumigena strain UTEX-B2092 
prokMSA_id:47987 AJ293120 Anabaena sp. IC-1 strain IC-1
prokMSA_id:48627 AF247572 Anabaena circinalis AWQC134C 
prokMSA_id:48640 AF247597 Anabaena flos-aquae NRC525-17 
prokMSA_id:49064 AF268024 Nodularia spumigena strain HKVV 
prokMSA_id:49853 AF247571 Anabaena circinalis AWQC118C 
prokMSA_id:50100 AJ133154 Aphanizomenon sp. strain PCC7905 
prokMSA_id:50849 AF247580 Anabaena circinalis AWQC323B 
prokMSA_id:50880 AF317631 Nostoc sp. PCC 7120 
prokMSA_id:51799 AF268023 Nodularia spumigena strain PCC73104 
prokMSA_id:52046 AF268005 Nodularia spumigena strain HEM 
prokMSA_id:52227 AP003598 Nostoc sp. PCC 7120 complete genome section 18/19
prokMSA_id:52583 AF247574 Anabaena circinalis AWQC173A 
prokMSA_id:52714 AJ133183 Nodularia sp. strain HKVV 
prokMSA_id:53088 AP003588 Nostoc sp. PCC 7120 complete genome section 8/19
prokMSA_id:53702 AJ293128 Aphanizomenon cf. flos-aquae PMC9501 strain PMC9501
prokMSA_id:53707 NC_003272 Nostoc sp. PCC 7120 complete genome
prokMSA_id:54292 AJ293113 Anabaena Lemmermannii strain 256
prokMSA_id:56040 AF516727 Cylindrospermopsis raciborskii strain Aqc 
prokMSA_id:60818 AF516746 Cylindrospermopsis raciborskii strain Florida I 
prokMSA_id:60819 AF516747 Anabaenopsis sp. 1A 
prokMSA_id:60823 AF516742 Cylindrospermopsis raciborskii strain Caia 
prokMSA_id:60824 AF516743 Cylindrospermopsis raciborskii strain Florida D 
prokMSA_id:60826 AF516741 Cylindrospermopsis raciborskii strain 4799 
prokMSA_id:60828 AF516736 Cylindrospermopsis raciborskii strain Germany 2 
prokMSA_id:60831 AF516735 Cylindrospermopsis raciborskii strain Germany 1 
prokMSA_id:60833 AF516732 Cylindrospermopsis raciborskii strain 05E 
prokMSA_id:60834 AF516731 Cylindrospermopsis raciborskii strain 23B 
prokMSA_id:60838 AF516729 Cylindrospermopsis raciborskii strain 24C 
prokMSA_id:60840 AF516728 Cylindrospermopsis raciborskii strain 09A 
prokMSA_id:60843 AF516724 Cylindrospermopsis raciborskii strain Goon 
prokMSA_id:65246 AJ488603 Anabaena azotica 
prokMSA_id:69813 AJ133156 Anabaena sp strain 90 
prokMSA_id:70323 AF268004 Nodularia spumigena strain BY1 
prokMSA_id:71028 AJ293104 Anabaena Lemmermannii strain 202A2
prokMSA_id:71065 AF516726 Cylindrospermopsis raciborskii strain Mk 
prokMSA_id:71066 AJ133177 Nodularia sp. strain BY1 
prokMSA_id:71116 AJ293121 Aphanizomenon sp. 326 strain 326
prokMSA_id:71521 AJ133178 Nodularia sp. strain GR8b 
prokMSA_id:71610 AJ133155 Aphanizomenon sp. strain TR183 
prokMSA_id:71803 AJ133180 Nodularia sp. strain NSOR-12 
prokMSA_id:72177 AJ133179 Nodularia sp. strain NSPI-05 
prokMSA_id:72636 AF516725 Cylindrospermopsis raciborskii strain LJ 
prokMSA_id:72893 AJ133182 Nodularia sp. strain UP16f 
prokMSA_id:72914 AJ133159 Anabaena sp. strain A202A1 
prokMSA_id:73017 AJ293126 Aphanizomenon flos-aquae strain PMC9401
prokMSA_id:73230 AF268008 Nodularia spumigena strain NSLA02A4 
prokMSA_id:73276 AJ133157 Anabaena sp. strain 66A 
prokMSA_id:74014 AF268017 Nodularia spumigena strain NSPH05A14 
prokMSA_id:74202 AJ133153 Aphanizomenon sp. strain 202 
prokMSA_id:74246 AJ293119 Anabaena cf. cylindrica PMC9705 strain PMC9705
prokMSA_id:74363 AJ293130 Aphanizomenon flos-aquae strain PMC9707
prokMSA_id:74386 AJ133158 Anabaena sp. strain CYA83/1 
prokMSA_id:79820 AB074502 Anabaena variabilis 
prokMSA_id:80820 AB074504 Calothrix brevissima 
prokMSA_id:81241 AY218831 Cylindrospermum sp. CENA33 
prokMSA_id:81799 AY218829 Anabaena flos-aquae UTCC 64 
prokMSA_id:82104 AY218828 Nostoc muscorum CENA61 
2.21.1.2.42081 OTU 11 seqs
prokMSA_id:3103 AF027655 Nostoc punctiforme PCC 73102
prokMSA_id:3105 AF062637 Nostoc GSV224 str. GSV224
prokMSA_id:3106 AF062638 Nostoc ATCC53789 ATCC 53789
prokMSA_id:3107 AF027653 Nostoc TDI#AR94 str. TDI#AR94
prokMSA_id:36941 AF317630 Nostoc sp. AWT 203 
prokMSA_id:56511 AF506240 Nostoc sp. 'Peltigera venosa cyanobiont 15' 
prokMSA_id:58853 AF506246 Nostoc sp. 'Muscicolous cyanobiont 21' 
prokMSA_id:58854 AF506247 Nostoc sp. 'Peltigera praetextata cyanobiont 22' 
prokMSA_id:58857 AF506244 Nostoc sp. 'Lobaria hallii cyanobiont 19' 
prokMSA_id:58858 AF506243 Nostoc sp. 'Peltigera pruinosa cyanobiont 18' 
prokMSA_id:58861 AF506239 Nostoc sp. 'Peltigera pruinosa cyanobiont 14' 
2.21.1.2.42615 OTU 3 seqs
prokMSA_id:34443 AJ245457 Aphanizomenon sp. 'BC-Aph 9601' 
prokMSA_id:50096 AF268018 Nodularia sphaerocarpa 
prokMSA_id:72921 AJ293125 Aphanizomenon cf. gracile 271 strain 271
2.21.1.2.42662 OTU 2 seqs
prokMSA_id:60570 AF407731 clone B95 
prokMSA_id:60602 AF407696 clone G01 
2.21.1.2.42881 OTU 2 seqs
prokMSA_id:3108 AF027654 Nostoc PCC9709 PCC 9709
prokMSA_id:74605 AJ133163 Cylindrospermum sp. strain PCC7417 
2.21.1.2.42923 OTU 3 seqs
prokMSA_id:60821 AF516744 Cylindrospermopsis raciborskii strain Florida G 
prokMSA_id:60822 AF516745 Cylindrospermopsis raciborskii strain Florida F 
prokMSA_id:60832 AF516733 Cylindrospermopsis raciborskii strain Brazil 1 
2.21.1.2.5 OTU 1 seq
prokMSA_id:32930 AF218374 Phormidium murrayii 
2.21.1.2.6257 OTU 1 seq
prokMSA_id:59099 AF534693 Oscillatoria spongeliae isolate 513bg 
2.21.1.2.7436 OTU 1 seq
prokMSA_id:80814 AY188306 clone KD3-62 
2.21.1.2.7500 OTU 1 seq
prokMSA_id:43523 AJ293118 Anabaena spiroides strain PMC9702
2.21.1.2.7553 OTU 1 seq
prokMSA_id:80843 AB074503 Nostoc linckia 
2.21.1.2.8145 OTU 1 seq
prokMSA_id:44224 AY069954 Scytonema sp. U-3-3 
2.21.1.2.9284 OTU 1 seq
prokMSA_id:3089 X68780 "Chlorogloeopsis" sp. str. HTF PCC 7518
2.21.1.2.9312 OTU 1 seq
prokMSA_id:3094 AB003167 Phormidium ambiguum str. M-71
2.21.1.2.9558 OTU 1 seq
prokMSA_id:58855 AF506245 Nostoc sp. 'Peltigera collina cyanobiont 20' 
2.21.1.3 GLOEOTHECE-GLOEOCAPSA_GROUP 180 seqs
2.21.1.3.10605 OTU 1 seq
prokMSA_id:3208 AF132783 Xenococcus PCC7305 PCC 7305
2.21.1.3.10602 OTU 1 seq
prokMSA_id:3206 X84812 "Oscillatoria corallinae" str. CJ1 SAG8.92
2.21.1.3.10681 OTU 1 seq
prokMSA_id:3232 AB003166 Spirulina subsalsa str. M-223
2.21.1.3.10706 OTU 1 seq
prokMSA_id:3240 X78680 Gloeothece membranacea
2.21.1.3.10680 OTU 1 seq
prokMSA_id:3231 AF132782 Cyanobacterium stanieri PCC 7202
2.21.1.3.10741 OTU 1 seq
prokMSA_id:3253 X63141 Prochloron didemni
2.21.1.3.10718 OTU 1 seq
prokMSA_id:3247 AJ000724 Halothece 'MPI 96P605' str. MPI 96P605
2.21.1.3.10738 OTU 1 seq
prokMSA_id:3250 X70770 Microcoleus sp. PCC 7420
2.21.1.3.15740 OTU 1 seq
prokMSA_id:17093 AB039000 Gloeocapsa PCC73106 
2.21.1.3.1603 OTU 1 seq
prokMSA_id:56680 AF329394 Spirulina subsalsa complete ; tRNA-Ile complete ; and 23S 
2.21.1.3.17281 OTU 1 seq
prokMSA_id:69683 AB058249 Cyanobacterium sp. MBIC10216 
2.21.1.3.18613 OTU 1 seq
prokMSA_id:16864 AY038527 cyanobacterium 
2.21.1.3.1927 OTU 1 seq
prokMSA_id:35028 AF296873 Cyanothece sp. PCC 8801 
2.21.1.3.20979 OTU 1 seq
prokMSA_id:71326 AJ344552 Chroococcidiopsis sp. BB79.2 SAG 2023
2.21.1.3.21150 OTU 1 seq
prokMSA_id:33445 AF218376 Oscillatoria sp. UTCC487 
2.21.1.3.21268 OTU 1 seq
prokMSA_id:62922 AF448075 Synechococcus sp. HOG 
2.21.1.3.21273 OTU 1 seq
prokMSA_id:62925 AF448073 Synechococcus sp. T71 
2.21.1.3.21270 OTU 1 seq
prokMSA_id:62924 AF448074 Synechococcus sp. UH7 
2.21.1.3.21269 OTU 1 seq
prokMSA_id:62923 AF448077 Synechococcus sp. PCC 8806 
2.21.1.3.24595 OTU 2 seqs
prokMSA_id:44601 AF445707 cyanobacterium clone SM2A06 
prokMSA_id:74772 AF445678 cyanobacterium clone SM1D12 
2.21.1.3.26803 OTU 3 seqs
prokMSA_id:39534 Y18789 Halospirulina sp.'MPI S3' 
prokMSA_id:71513 Y18791 Halospirulina tapeticola strain CCC Baja-95 Cl.2
prokMSA_id:72932 Y18790 Halospirulina sp.'CCC Baja-95 Cl.3' 
2.21.1.3.27403 OTU 2 seqs
prokMSA_id:3233 AF091109 Spirulina P7 str. P7
prokMSA_id:50782 Y18792 Spirulina sp. strain MPI S4 
2.21.1.3.27393 OTU 2 seqs
prokMSA_id:24455 AJ344557 Chroococcidiopsis sp. PCC 6712 strain PCC 6712
prokMSA_id:42907 AB039004 Chroococcidiopsis PCC6712 
2.21.1.3.29560 OTU 2 seqs
prokMSA_id:3157 AJ000715 Cyanothece sp. PCC 7424
prokMSA_id:48404 AF132932 Cyanothece sp. PCC 7424 
2.21.1.3.30646 OTU 2 seqs
prokMSA_id:3159 AF132773 Synechococcus ATCC700244 str. C9 ATCC 700244
prokMSA_id:47451 AF445654 cyanobacterium clone SM1B04 
2.21.1.3.31380 OTU 2 seqs
prokMSA_id:28876 AB039008 Stanieria cyanosphaera 
prokMSA_id:48280 AF132931 Stanieria cyanosphaera 
2.21.1.3.31438 OTU 2 seqs
prokMSA_id:3211 X75045 unnamed organism
prokMSA_id:3230 X75045 unnamed organism
2.21.1.3.31826 OTU 3 seqs
prokMSA_id:25314 AF445673 cyanobacterium clone SM1D04 
prokMSA_id:28685 AF445691 cyanobacterium clone SM1F09 
prokMSA_id:40359 AF445667 cyanobacterium clone SM1C10 
2.21.1.3.32079 OTU 4 seqs
prokMSA_id:21210 AY032934 Symploca sp. VP642c 
prokMSA_id:36962 AB039021 Symploca PCC8002 
prokMSA_id:52817 AY032933 Symploca sp. VP642b 
prokMSA_id:53953 AF306497 Symploca sp. VP377 
2.21.1.3.32342 OTU 15 seqs
prokMSA_id:3207 X78681 Pleurocapsa sp. PCC 7516
prokMSA_id:24335 AB039006 Pleurocapsa PCC7319 
prokMSA_id:24838 AJ344556 Chroococcidiopsis sp. CCMP1489 strain CCMP1489
prokMSA_id:42381 AJ344561 Myxosarcina sp. PCC 7312 strain PCC 7312
prokMSA_id:45178 AJ344562 Myxosarcina sp. PCC 7325 strain PCC 7325
prokMSA_id:45775 AJ344559 Dermocarpella incrassata strain SAG 29.84
prokMSA_id:46080 AB039009 Stanieria PCC7301 
prokMSA_id:46462 AJ344564 Pleurocapsa minor strain SAG 4.99
prokMSA_id:69285 AB058218 Dermocarpa sp. MBIC10056 
prokMSA_id:69707 AB058287 Dermocarpa sp. MBIC10768 
prokMSA_id:69734 AB058199 Dermocarpa sp. MBIC10001 
prokMSA_id:71088 AB058284 Dermocarpa sp. MBIC10765 
prokMSA_id:71478 AB058285 Dermocarpa sp. MBIC10766 
prokMSA_id:74148 AB058202 Dermocarpa sp. MBIC10004 
prokMSA_id:80822 AB074511 Pleurocapsa sp. PCC 7314 
2.21.1.3.32903 OTU 2 seqs
prokMSA_id:3158 AF132771 Cyanothece ATCC51142 ATCC 51142
prokMSA_id:27671 AF193247 Symbiont of Climacodium frauenfeldianum 
2.21.1.3.33454 OTU 3 seqs
prokMSA_id:22139 AY049752 Lyngbya sp. NIH309 
prokMSA_id:35119 AY049751 Lyngbya sp. VP417b 
prokMSA_id:46480 AY049750 Lyngbya sp. VP417a 
2.21.1.3.33590 OTU 7 seqs
prokMSA_id:3244 AJ000708 Cyanothece sp. PCC 7418
prokMSA_id:3245 AJ000709 str. MPI 95AH10
prokMSA_id:3246 AJ000710 str. MPI 95AH13
prokMSA_id:3248 AJ000712 str. MPI 96N303
prokMSA_id:3249 AJ000713 str. MPI 96N304
prokMSA_id:3252 AJ000711 Dactylococcopsis sp. PCC 8305
prokMSA_id:22842 AF296872 Cyanothece sp. PCC 7418 
2.21.1.3.33735 OTU 9 seqs
prokMSA_id:3115 D64000 Synechocystis sp. PCC 6803
prokMSA_id:3116 X94705 Merismopedia glauca str. B1448-1
prokMSA_id:3117 D90916 Synechocystis sp. PCC 6803
prokMSA_id:3120 AB001339 Synechocystis sp. PCC 6803
prokMSA_id:3243 AB001339 Synechocystis sp. PCC 6803
prokMSA_id:18569 AB041937 Synechocystis PCC6714 
prokMSA_id:27910 AB041936 Synechocystis PCC6702 
prokMSA_id:44249 AB041938 Synechocystis PCC6805 
prokMSA_id:82137 AY224195 Synechocystis sp. PCC 6803 
2.21.1.3.34154 OTU 8 seqs
prokMSA_id:3124 AB015059 Synechococcus sp. PCC 7003
prokMSA_id:3125 AB003164 "Oscillatoria rosea" str. M-220
prokMSA_id:3126 AB015060 Synechococcus sp. PCC 7117
prokMSA_id:3127 AB015061 Synechococcus sp. PCC 73109
prokMSA_id:17081 AJ000716 Synechococcus sp. strain PCC 7002
prokMSA_id:42888 D88289 Synechococcus sp
prokMSA_id:55776 AF448076 Synechococcus sp. PCC 8807 
prokMSA_id:71525 AF513475 Synechococcus sp. PH40 
2.21.1.3.39973 OTU 80 seqs
prokMSA_id:3112 U40337 Microcystis aeruginosa
prokMSA_id:3113 U40338 Microcystis aeruginosa
prokMSA_id:3114 D89031 Microcystis aeruginosa str. NIES87
prokMSA_id:3119 U40340 Microcystis aeruginosa
prokMSA_id:3121 U40333 Microcystis wesenbergii
prokMSA_id:3122 U40332 Microcystis viridis
prokMSA_id:3129 Z28700 Microcystis aeruginosa str. NIES89
prokMSA_id:3130 AB012328 Microcystis viridis str. TAC17
prokMSA_id:3131 AB012331 Microcystis viridis str. TAC78
prokMSA_id:3132 AB012332 Microcystis aeruginosa str. TAC71
prokMSA_id:3133 AB012334 Microcystis wesenbergii str. TAC38
prokMSA_id:3134 AB012336 Microcystis novacekii str. TAC20
prokMSA_id:3135 D89033 Microcystis viridis str. NIES102
prokMSA_id:3136 U03403 Microcystis aeruginosa str. NIES89
prokMSA_id:3161 Z28699 Microcystis aeruginosa PCC 7806
prokMSA_id:3162 U66194 Microcystis sp. str. KND9506
prokMSA_id:3163 AB012326 Microcystis sp. str. P.R.China
prokMSA_id:3164 AB012327 Microcystis sp. str. P.R.China
prokMSA_id:3165 AB012329 Microcystis sp. str. Thailand
prokMSA_id:3166 AB012330 Microcystis sp. str. Thailand
prokMSA_id:3167 AB012333 Microcystis aeruginosa str. TAC86
prokMSA_id:3168 AB012335 Microcystis wesenbergii str. TAC52
prokMSA_id:3169 AB012337 Microcystis novacekii str. TAC65
prokMSA_id:3170 AB012338 Microcystis ichthyoblabe str. TAC48
prokMSA_id:3177 AB012339 Microcystis ichthyoblabe
prokMSA_id:3191 U03402 Microcystis aeruginosa PCC 7806
prokMSA_id:3213 U40331 Microcystis sp. str. AWT139
prokMSA_id:3235 U40334 Microcystis wesenbergii
prokMSA_id:3236 D89032 Microcystis aeruginosa str. NIES98
prokMSA_id:3237 D89034 Microcystis wesenbergii str. NIES111
prokMSA_id:3241 U40339 Microcystis aeruginosa
prokMSA_id:16345 AF139316 Microcystis aeruginosa strain UWOCC C4 
prokMSA_id:16837 AF139312 Microcystis sp. 'UWOCC BauldE' strain UWOCC BauldE 
prokMSA_id:17617 AF139318 Microcystis aeruginosa strain UWOCC M4 
prokMSA_id:17755 AF139322 Microcystis aeruginosa strain UWOCC MR-B 
prokMSA_id:18186 AF139311 Microcystis sp. 'UWOCC Q' 
prokMSA_id:18594 AF139304 Microcystis aeruginosa strain UWOCC AubB1 
prokMSA_id:18622 AF139317 Microcystis aeruginosa strain UWOCC RID-1 
prokMSA_id:19980 AF139328 Microcystis flos-aquae strain UWOCC C2 
prokMSA_id:21664 AF139305 Microcystis aeruginosa strain UWOCC Bauld5A 
prokMSA_id:24627 AF139325 Microcystis aeruginosa strain UWOCC S-15-b 
prokMSA_id:25608 AB035550 Microcystis ichthyoblabe 
prokMSA_id:26154 AJ133175 Microcystis sp. strain 269 
prokMSA_id:26766 AF139303 Microcystis aeruginosa strain UWOCC AK-1 
prokMSA_id:27566 AF139309 Microcystis sp. 'UWOCC K' 
prokMSA_id:27606 AB035549 Microcystis aeruginosa 
prokMSA_id:27662 AF139314 Microcystis aeruginosa strain UWOCC P3 
prokMSA_id:28391 AB035553 Microcystis wesenbergii 
prokMSA_id:28651 AF139315 Microcystis aeruginosa strain UWOCC C1 
prokMSA_id:29068 AB035551 Microcystis novacekii 
prokMSA_id:29230 AF139326 Microcystis aeruginosa strain UWOCC E7 
prokMSA_id:29257 AF139323 Microcystis aeruginosa strain UWOCC MR-C 
prokMSA_id:34524 AF139319 Microcystis aeruginosa strain UWOCC C5 
prokMSA_id:35129 AF139329 Microcystis flos-aquae strain UWOCC C3 
prokMSA_id:35467 AF139301 Microcystis aeruginosa strain UWOCC 84/1 
prokMSA_id:37777 AJ133173 Microcystis sp. strain GL280641 
prokMSA_id:37828 AF139302 Microcystis aeruginosa strain UWOCC AKGV- 
prokMSA_id:38719 AF139310 Microcystis sp. 'UWOCC MSU28-1' 
prokMSA_id:39102 AF139294 Microcystis aeruginosa strain UWOCC 017 
prokMSA_id:39573 AF139300 Microcystis aeruginosa strain PCC 7820 
prokMSA_id:39760 AF139308 Microcystis sp. 'UWOCC F' strain UWOCC F 
prokMSA_id:40291 AF139327 Microcystis flos-aquae strain UWOCC N 
prokMSA_id:40536 AF139320 Microcystis aeruginosa strain UWOCC MR-A 
prokMSA_id:40548 AF139293 Microcystis aeruginosa strain UWOCC 006 
prokMSA_id:40647 AF139321 Microcystis aeruginosa strain UWOCC MR-B 
prokMSA_id:41065 AF139313 Microcystis aeruginosa strain UWOCC MSU28-2 
prokMSA_id:42696 AJ133174 Microcystis sp. strain NIES104 
prokMSA_id:43227 AJ133172 Microcystis sp. strain 199 
prokMSA_id:43518 AF139306 Microcystis sp. 'UWOCC BauldB' 
prokMSA_id:45553 AB035552 Microcystis viridis 
prokMSA_id:47759 AF139299 Microcystis aeruginosa strain PCC 7806 
prokMSA_id:48796 AF139295 Microcystis aeruginosa strain UWOCC 019 
prokMSA_id:49423 AF139297 Microcystis aeruginosa strain UWOCC 024 
prokMSA_id:49574 AF139307 Microcystis sp. 'UWOCC CBS' strain UWOCC CBS 
prokMSA_id:50935 AF139296 Microcystis aeruginosa strain UWOCC 023 
prokMSA_id:51805 AF139324 Microcystis aeruginosa strain UWOCC MR-D 
prokMSA_id:52503 AF139292 Microcystis aeruginosa strain UWOCC 001 
prokMSA_id:52726 AF139298 Microcystis aeruginosa strain UWOCC 026 
prokMSA_id:70007 AJ133170 Microcystis sp. strain 130 
prokMSA_id:71454 AJ133171 Microcystis sp. strain PCC7941 
2.21.1.3.42728 OTU 3 seqs
prokMSA_id:55668 AB067575 Gloeocapsa sp. KO38CU6 genes Ile-tRNA 23S and complete 
prokMSA_id:67713 AB067579 Gloeocapsa sp. KO30D1 genes Ile-tRNA 23S and complete 
prokMSA_id:67715 AB067578 Gloeocapsa sp. KO20B5 genes Ile-tRNA 23S and complete 
2.21.1.3.42760 OTU 4 seqs
prokMSA_id:67712 AB067581 Cyanothece sp. SKTU126 genes Ile-tRNA 23S and complete 
prokMSA_id:67714 AB067580 Gloeothece sp. KO68DGA genes Ile-tRNA 23S and complete 
prokMSA_id:67719 AB067577 Gloeothece sp. KO11DG genes r Ile-tRNA 23S and complete 
prokMSA_id:67720 AB067576 Gloeothece sp. SK40 genes Ile-tRNA 23S and complete 
2.21.1.3.43 OTU 1 seq
prokMSA_id:49254 AB039007 Pleurocapsa PCC7327 
2.21.1.3.4935 OTU 1 seq
prokMSA_id:80524 AB074510 Xenococcus sp. PCC 7307 
2.21.1.3.6805 OTU 1 seq
prokMSA_id:59109 AF420444 Oscillatoria spongeliae 520bg 
2.21.1.3.7010 OTU 1 seq
prokMSA_id:29085 AB039001 Synechocystis PCC6308 
2.21.1.3.7871 OTU 1 seq
prokMSA_id:35765 AJ344555 Chroococcidiopsis sp. BB96.1 strain SAG 2026
2.21.1.3.9977 OTU 1 seq
prokMSA_id:3171 AB012340 Microcystis aeruginosa str. TAC170
2.21.1.4 LEPTOLYNGBYA_GROUP 19 seqs
2.21.1.4.10812 OTU 1 seq
prokMSA_id:3271 AJ007375 str. WH12
2.21.1.4.10815 OTU 1 seq
prokMSA_id:3274 AF076159 unnamed organism
2.21.1.4.10774 OTU 1 seq
prokMSA_id:3260 AF076160 unnamed organism
2.21.1.4.10810 OTU 1 seq
prokMSA_id:3270 AJ007374 str. WH7B
2.21.1.4.12977 OTU 1 seq
prokMSA_id:29805 AF218371 Phormidium autumnale 
2.21.1.4.16671 OTU 1 seq
prokMSA_id:40082 AF216946 Synechococcus PCC7902 
2.21.1.4.18891 OTU 1 seq
prokMSA_id:70492 AB058225 LPP-group MBIC10087 
2.21.1.4.18960 OTU 1 seq
prokMSA_id:31912 AB039003 Fischerella muscicola 
2.21.1.4.24918 OTU 2 seqs
prokMSA_id:3261 AF076162 unnamed organism
prokMSA_id:3262 AF076163 unnamed organism
2.21.1.4.32787 OTU 6 seqs
prokMSA_id:3280 X84808 Leptolyngbya foveolarum str. Komarek 1964/112
prokMSA_id:3281 AF132793 "Plectonema boryanum" UTEX 485
prokMSA_id:3282 AB003163 "Oscillatoria" sp. str. M-117
prokMSA_id:3283 AB003169 Phormidium sp. str. M-99
prokMSA_id:39175 AF218372 Phormidium tenue 
prokMSA_id:43289 AF218368 Phormidium molle 
2.21.1.4.3746 OTU 1 seq
prokMSA_id:57549 AY163573 Acaryochloris marina strain MBIC 11017 
2.21.1.4.42473 OTU 2 seqs
prokMSA_id:69541 AB058209 LPP-group MBIC10012 
prokMSA_id:69689 AB058201 Phormidium sp. MBIC10003 
2.21.1.6 PHORMIDIUM_GROUP 11 seqs
2.21.1.6.10849 OTU 1 seq
prokMSA_id:3287 X62685 Phormidium minutum str. D5
2.21.1.6.13338 OTU 1 seq
prokMSA_id:52706 AB039011 Leptolyngbya PCC7375 
2.21.1.6.16505 OTU 1 seq
prokMSA_id:69558 AB058200 Phormidium sp. MBIC10002 
2.21.1.6.17197 OTU 1 seq
prokMSA_id:69650 AB058219 Phormidium sp. MBIC10070 
2.21.1.6.34148 OTU 3 seqs
prokMSA_id:3288 AB003168 "Oscillatoria neglecta" str. M-82
prokMSA_id:34894 AB039012 Leptolyngbya PCC7104 
prokMSA_id:38561 AJ133106 Oscillatoria sp
2.21.1.6.41091 OTU 2 seqs
prokMSA_id:3289 AF170757 str. QSSC5cya
prokMSA_id:3293 AF091110 "Plectonema F3" str. F3
2.21.1.6.6854 OTU 1 seq
prokMSA_id:73558 AB058267 LPP-group MBIC10597 
2.21.1.6.76 OTU 1 seq
prokMSA_id:56488 AB058224 LPP-group MBIC10086 
2.21.1.8 MICROCYSTIS_GROUP 11 seqs
2.21.1.8.11368 OTU 1 seq
prokMSA_id:3308 U40336 Microcystis holsatica
2.21.1.8.11366 OTU 1 seq
prokMSA_id:3307 U40335 Microcystis elabens
2.21.1.8.11361 OTU 1 seq
prokMSA_id:3304 AJ007864 clone LD7
2.21.1.8.20024 OTU 1 seq
prokMSA_id:17697 AF212922 Planktothrix sp. FP1 
2.21.1.8.24629 OTU 3 seqs
prokMSA_id:3301 AF132792 Prochlorothrix hollandica
prokMSA_id:3302 AJ007866 clone LD16
prokMSA_id:3306 AJ007907 Prochlorothrix hollandica
2.21.1.8.32064 OTU 4 seqs
prokMSA_id:3303 D88288 Synechococcus sp. PCC 7942
prokMSA_id:28050 AF132930 Synechococcus sp. PCC 7942 
prokMSA_id:50219 AF216949 Synechococcus PCC7943 
prokMSA_id:81974 AY224194 Synechococcus sp. BD-1 
2.21.1.9 PRC.MARINUS_GROUP 119 seqs
2.21.1.9.10355 OTU 1 seq
prokMSA_id:60158 AJ347056 clone TK09
2.21.1.9.11136 OTU 1 seq
prokMSA_id:30150 AF172715 Pavlova gyrans ; chloroplast chloroplast product
2.21.1.9.11453 OTU 1 seq
prokMSA_id:3333 D89036 Microcystis holsatica str. NIES43
2.21.1.9.38385 OTU 112 seqs
prokMSA_id:3315 M63814 Sargasso Sea clone SAR 139
prokMSA_id:3320 X52171 Sargasso Sea clone SAR 7
prokMSA_id:3328 AJ006282 str. watersample from Lake Loosdrecht
prokMSA_id:3338 AF001480 Synechococcus WH8101 str. WH8101
prokMSA_id:3339 AF081834 Synechococcus WH7803 str. WH7803
prokMSA_id:3343 AF098370 str. ACE
prokMSA_id:3344 AF098371 str. PENDANT
prokMSA_id:3347 AF053397 Prochlorococcus MIT9303 str. MIT9303
prokMSA_id:3348 AF053399 Prochlorococcus MIT9313 str. MIT9313
prokMSA_id:3350 X52169 Sargasso Sea clone SAR 6
prokMSA_id:3351 AF115268 Prochlorococcus MIT9201 str. MIT9201
prokMSA_id:3352 AF115269 Prochlorococcus MIT9202 str. MIT9202
prokMSA_id:3353 AF115270 Prochlorococcus MIT9211 str. MIT9211
prokMSA_id:3372 AF098373 str. P211
prokMSA_id:3373 AF098374 str. P212
prokMSA_id:3374 AB001724 Microcystis elabens str. NIES42
prokMSA_id:3375 AF180967 Prochlorococcus marinus PCC 9511
prokMSA_id:3376 AF053396 Prochlorococcus MIT9302 str. MIT9302
prokMSA_id:3377 AF053398 Prochlorococcus MIT9312 str. MIT9312
prokMSA_id:21853 AF311291 Synechococcus sp. WH 7803 
prokMSA_id:23065 AF245618 Synechococcus NAC1-5 
prokMSA_id:28802 AJ133176 Synechococcus sp. strain GL150636 
prokMSA_id:28869 AJ289785 Cyanobacterium 5X15 
prokMSA_id:29390 AF216951 Synechococcus sp. PS680 
prokMSA_id:33102 AF311218 Prochlorococcus marinus subsp. pastoris str. NATL1 
prokMSA_id:33530 AF311292 Synechococcus sp. WH 8018 
prokMSA_id:38616 AF216952 Synechococcus sp. PS715 
prokMSA_id:38890 AF311220 Prochlorococcus marinus str. TAK9803-2 
prokMSA_id:46334 AF216948 Synechococcus PCC7920 
prokMSA_id:49782 AF311217 Prochlorococcus marinus str. EQPAC1 
prokMSA_id:52928 AF317074 Synechococcus sp. BO8807 ; internal transcribed spacer 1 com
prokMSA_id:53000 AF330252 Synechococcus sp. BS4 ; internal transcribed spacer 1 comple
prokMSA_id:53206 AF330250 Synechococcus sp. LBB3 ; internal transcribed spacer 1 compl
prokMSA_id:53228 AF317072 Synechococcus sp. BO8806 ; internal transcribed spacer 1 com
prokMSA_id:53331 AF317076 Synechococcus rubescens ; internal transcribed spacer 1 comp
prokMSA_id:53495 AF330248 Synechococcus sp. LM94 ; internal transcribed spacer 1 compl
prokMSA_id:53650 AF330251 Synechococcus sp. BO0014 ; internal transcribed spacer 1 com
prokMSA_id:53923 AF317075 Synechococcus sp. BO9404 ; internal transcribed spacer 1 com
prokMSA_id:54219 AF317073 Synechococcus sp. BO8805 ; internal transcribed spacer 1 com
prokMSA_id:54464 AF330247 Synechococcus sp. LBP1 ; internal transcribed spacer 1 compl
prokMSA_id:54469 AF317078 Synechococcus sp. BO983115 ; internal transcribed spacer 1 c
prokMSA_id:54577 AF330253 Synechococcus sp. BS5 ; internal transcribed spacer 1 comple
prokMSA_id:54601 AF330249 Synechococcus sp. LBG2 ; internal transcribed spacer 1 compl
prokMSA_id:58392 AY033297 Synechococcus sp. MB11A04 ; tRNA-Ile and tRNA-Ala genes comp
prokMSA_id:58393 AY033308 Synechococcus sp. MB11E09 ; tRNA-Ile and tRNA-Ala genes comp
prokMSA_id:59293 AF539812 Synechococcus sp. WH 8012 
prokMSA_id:62928 AF448070 Synechococcus sp. PS845 
prokMSA_id:62929 AF448069 Synechococcus sp. PS840 
prokMSA_id:62930 AF448068 Synechococcus sp. PS838 
prokMSA_id:62931 AF448067 Synechococcus sp. TAGS 
prokMSA_id:62933 AF448065 Synechococcus sp. NAN 
prokMSA_id:62935 AF448063 Synechococcus sp. UBR 
prokMSA_id:62939 AF448060 Synechococcus sp. 1002 
prokMSA_id:62940 AF448062 Synechococcus sp. IR48 
prokMSA_id:68986 AY033307 Prochlorococcus sp. MB11E08 ; tRNA-Ile and tRNA-Ala genes co
prokMSA_id:69178 AB058265 Synechococcus sp. MBIC10459 
prokMSA_id:69200 AY151235 Synechococcus sp. MW28B3 complete 
prokMSA_id:69228 AB058250 Synechococcus sp. MBIC10224 
prokMSA_id:69485 AY151234 Synechococcus sp. MW26A5 complete 
prokMSA_id:69531 AY151245 Synechococcus sp. MW76B2 complete 
prokMSA_id:69544 AY151241 Synechococcus sp. MW73D5 complete 
prokMSA_id:69548 AY151247 Synechococcus sp. MW99B6 complete 
prokMSA_id:69574 AY151240 Synechococcus sp. MW72C6 complete 
prokMSA_id:69638 AY151249 Synechococcus sp. MW101C3 complete 
prokMSA_id:69725 AY151232 Synechococcus sp. MW15-2 complete 
prokMSA_id:69965 AY151242 Synechococcus sp. MW74D6 complete 
prokMSA_id:70279 AY151233 Synechococcus sp. MW25B5 complete 
prokMSA_id:70431 AF400152 Synechococcus sp. MLS1228cl3 
prokMSA_id:70534 AY151246 Synechococcus sp. MW77D1 complete 
prokMSA_id:70666 AY151239 Synechococcus sp. MW6B4 complete 
prokMSA_id:70678 AB058226 Synechococcus sp. MBIC10089 
prokMSA_id:71118 AY151248 Synechococcus sp. MW10#1 complete 
prokMSA_id:71256 AY151250 Synechococcus sp. MW73B4 complete 
prokMSA_id:71906 AB058264 Synechococcus sp. MBIC10456 
prokMSA_id:72087 AY151238 Synechococcus sp. MW4C3 complete 
prokMSA_id:72387 AY151236 Synechococcus sp. MW32B5 complete 
prokMSA_id:72834 AY151243 Synechococcus sp. MW6C6 complete 
prokMSA_id:73727 AB058205 Synechococcus sp. MBIC10007 
prokMSA_id:74342 AY151237 Synechococcus sp. MW33B4 complete 
prokMSA_id:74359 AY151251 Synechococcus sp. MW97C4 complete 
prokMSA_id:74397 AY151244 Synechococcus sp. MW74D3 complete 
prokMSA_id:79102 AF382117 clone ZA3242c 
prokMSA_id:79192 AF382140 clone ZA3833c 
prokMSA_id:79250 AY183115 Cyanobium sp. LB03 
prokMSA_id:79350 AF382136 clone ZA3703c 
prokMSA_id:79569 AF382128 clone ZA3803c 
prokMSA_id:81048 AY125366 Synechococcus sp. clone A715009 
prokMSA_id:81108 AY125373 Synechococcus sp. clone A315001 
prokMSA_id:81268 AY125377 Synechococcus sp. clone A315006 
prokMSA_id:81277 AY125372 Synechococcus sp. clone A715016 
prokMSA_id:81379 AY125360 Synechococcus sp. clone A715001 
prokMSA_id:81393 AY125375 Synechococcus sp. clone A315003 
prokMSA_id:81413 AY125371 Synechococcus sp. clone A715015 
prokMSA_id:81449 AY125362 Synechococcus sp. clone A715003 
prokMSA_id:81563 AY125378 Synechococcus sp. clone A315007 
prokMSA_id:81631 AY125364 Synechococcus sp. clone A715005 
prokMSA_id:81638 AY125385 Synechococcus sp. clone A315025 
prokMSA_id:81662 AY125383 Synechococcus sp. clone A315023 
prokMSA_id:81715 AY125363 Synechococcus sp. clone A715004 
prokMSA_id:81769 AY125369 Synechococcus sp. clone A715013 
prokMSA_id:81828 AY125374 Synechococcus sp. clone A315002 
prokMSA_id:81859 AY125365 Synechococcus sp. clone A715006 
prokMSA_id:81872 AY125368 Synechococcus sp. clone A715012 
prokMSA_id:81898 AY125380 Synechococcus sp. clone A315010 
prokMSA_id:82121 AY125367 Synechococcus sp. clone A715011 
prokMSA_id:82146 AY125376 Synechococcus sp. clone A315004 
prokMSA_id:82220 AY125370 Synechococcus sp. clone A715014 
prokMSA_id:82249 AY125381 Synechococcus sp. clone A315011 
prokMSA_id:82268 AY125361 Synechococcus sp. clone A715002 
prokMSA_id:82280 AY125379 Synechococcus sp. clone A315008 
prokMSA_id:82376 AY125382 Synechococcus sp. clone A315020 
prokMSA_id:82398 AY125386 Synechococcus sp. clone A315026 
2.21.1.9.41066 OTU 4 seqs
prokMSA_id:3345 AF098372 str. ABRAXAS
prokMSA_id:30769 AF311219 Prochlorococcus marinus subsp. pastoris str. NATL2 
prokMSA_id:68984 AY033310 Prochlorococcus sp. MB11F02 ; tRNA-Ile and tRNA-Ala genes co
prokMSA_id:79129 AF382121 clone ZA3421c 
2.21.1.99 VARIOUS 4 seqs
2.21.1.99.31334 OTU 2 seqs
prokMSA_id:58434 AB045963 Planktothricoides raciborskii strain: NSLA4
prokMSA_id:58436 AB045962 Planktothricoides raciborskii strain: NSLA3
2.21.1.99.33103 OTU 2 seqs
prokMSA_id:17732 AF474001 cyanobacterium LR-3L 
prokMSA_id:25443 AB039010 Geitlerinema PCC7105 
2.21.2 CHLOROPLASTS_AND_CYANELLES 223 seqs
2.21.2.1 PSEUDANABAENA_GROUP 18 seqs
2.21.2.1.17693 OTU 1 seq
prokMSA_id:16700 AB039016 Pseudanabaena PCC6802 
2.21.2.1.21251 OTU 1 seq
prokMSA_id:62918 AF448080 Synechococcus sp. PCC 7502 
2.21.2.1.27605 OTU 2 seqs
prokMSA_id:3382 AF091108 Pseudoanabaena biceps PCC 7367
prokMSA_id:28470 AB039018 Pseudanabaena PCC7367 
2.21.2.1.27572 OTU 4 seqs
prokMSA_id:3383 AF132774 Synechococcus ATCC700245 str. P1 ATCC 700245
prokMSA_id:3384 AF132775 Synechococcus ATCC700246 str. P2 ATCC 700246
prokMSA_id:37551 AF445693 cyanobacterium clone SM1F11 
prokMSA_id:42778 AF445722 cyanobacterium clone SM2D09 
2.21.2.1.27628 OTU 2 seqs
prokMSA_id:3386 AB003165 Phormidium mucicola str. M-221
prokMSA_id:30337 AB039019 Pseudanabaena PCC7403 
2.21.2.1.34545 OTU 4 seqs
prokMSA_id:3387 AJ007908 "Oscillatoria limnetica" str. MR1
prokMSA_id:33610 AB039020 Pseudanabaena PCC7408 
prokMSA_id:54033 AB039017 Pseudanabaena PCC6903 
prokMSA_id:54183 AF218370 Oscillatoria sp. UTCC393 
2.21.2.1.42155 OTU 3 seqs
prokMSA_id:81599 AF505960 Synechococcus sp. 37 NACy05-A 
prokMSA_id:82209 AF505962 cyanobacterium NACy05-A 
prokMSA_id:82458 AF505961 cyanobacterium NACy05-A 
2.21.2.1.6328 OTU 1 seq
prokMSA_id:58469 AB045929 Limnothrix redekei strain: NIVA CYA 227/1
2.21.2.2 CYANELLE_GROUP 5 seqs
2.21.2.2.11644 OTU 1 seq
prokMSA_id:3392 -- X82496 Glaucocystis nostochinearum str. SAG 45.88 blue green alga
2.21.2.2.11646 OTU 1 seq
prokMSA_id:3393 -- X82495 Gloeochaete wittrockiana str. SAG B 46.84 blue green alga
2.21.2.2.27643 OTU 3 seqs
prokMSA_id:3388 U30821 Cyanophora paradoxa colorless flagellate alga -- cyanelle
prokMSA_id:3390 U30821 Cyanophora paradoxa colorless flagellate alga -- cyanelle
prokMSA_id:53530 NC_001675 Cyanophora paradoxa cyanelle complete genome
2.21.2.3 OTHER_CHLOROPLASTS 90 seqs
2.21.2.3.1 SKELETONEMA_SUBGROUP 23 seqs
2.21.2.3.1.11082 OTU 1 seq
prokMSA_id:30128 U70721 eukaryote OM164 
2.21.2.3.1.12073 OTU 1 seq
prokMSA_id:3402 L10941 marine snow associated clone agg56
2.21.2.3.1.12180 OTU 1 seq
prokMSA_id:3447 M82860 Olisthodiscus luteus stramenopile -- chloroplast
2.21.2.3.1.12181 OTU 1 seq
prokMSA_id:3448 X14873 Pylaiella littoralis brown alga -- chloroplast
2.21.2.3.1.19481 OTU 1 seq
prokMSA_id:63316 AF523902 clone RCP2-13 
2.21.2.3.1.34054 OTU 18 seqs
prokMSA_id:3400 U32670 clone OM20
prokMSA_id:3401 L10940 marine snow associated clone agg46
prokMSA_id:3403 X82155 Skeletonema pseudocostatum str. CSIRO culture CS-76 centric
prokMSA_id:3438 AJ007876 clone LD27
prokMSA_id:3439 X82154 Skeletonema costatum str. UBS-18 Univ. of British Columbia c
prokMSA_id:18056 AF418977 diatom clone HTDD6 ; chloroplast chloroplast product
prokMSA_id:26067 AF418975 diatom clone HT2F1 ; chloroplast chloroplast product
prokMSA_id:30482 AF418976 diatom clone HTAA8 ; chloroplast chloroplast product
prokMSA_id:30625 AF418971 diatom clone HT2A3 ; chloroplast chloroplast product
prokMSA_id:38733 AF327029 bacillariophyte clone AWS98-19b ; chloroplast chloroplast pr
prokMSA_id:42337 AF418972 diatom clone HTB2 ; chloroplast chloroplast product
prokMSA_id:44942 AF418974 diatom clone HT2B7 ; chloroplast chloroplast product
prokMSA_id:48163 AF418973 diatom clone HT2A8 ; chloroplast chloroplast product
prokMSA_id:48825 NC_001713 Odontella sinensis chloroplast complete genome
prokMSA_id:63815 AF454328 plastid clone ML310M-8 
prokMSA_id:64737 AF514855 Haslea wawrikae ; chloroplast chloroplast product
prokMSA_id:69021 Z67753 Odontella sinensis complete chloroplast genome
prokMSA_id:77079 AY168751 diatom clone HC-8 ; chloroplast chloroplast product
2.21.2.3.2 EUGLENA_SUBGROUP 28 seqs
2.21.2.3.2.12202 OTU 1 seq
prokMSA_id:3452 X74006 Prototheca zopfii str. SAG 263-1a green alga -- chloroplast
2.21.2.3.2.12200 OTU 1 seq
prokMSA_id:3450 U21490 Chlorarachnion reptans CCMP 238 amoeboflagellate -- chloropl
2.21.2.3.2.12205 OTU 1 seq
prokMSA_id:3456 X70810 Euglena gracilis euglenophycean alga -- chloroplast
2.21.2.3.2.12203 OTU 1 seq
prokMSA_id:3454 -- X14386 Astasia longa str. CCAP 1204-17a colorless euglenophycean al
2.21.2.3.2.12826 OTU 1 seq
prokMSA_id:38279 AF289250 Phacus orbicularis ; chloroplast chloroplast product
2.21.2.3.2.15119 OTU 1 seq
prokMSA_id:16320 AF289244 Euglena stellata ; chloroplast chloroplast product
2.21.2.3.2.16893 OTU 1 seq
prokMSA_id:77406 AY070252 Euglena geniculata SAG 1224-4F ; chloroplast chloroplast pro
2.21.2.3.2.17169 OTU 1 seq
prokMSA_id:46777 U70717 eukaryote OM81 
2.21.2.3.2.17340 OTU 1 seq
prokMSA_id:40174 AF289253 Strombomonas costata ; chloroplast chloroplast product
2.21.2.3.2.18843 OTU 1 seq
prokMSA_id:33162 AF289242 Euglena polymorpha ; chloroplast chloroplast product
2.21.2.3.2.19920 OTU 1 seq
prokMSA_id:24874 AF289246 Euglena tristella ; chloroplast chloroplast product
2.21.2.3.2.21196 OTU 1 seq
prokMSA_id:40682 AF289238 Colacium vesiculosum ; chloroplast chloroplast product
2.21.2.3.2.26817 OTU 2 seqs
prokMSA_id:3449 U21492 Chlorarachnion sp. CCMP 242 amoeboflagellate -- chloroplast
prokMSA_id:72174 U21492 Chlorarachnion CCMP242 chloroplast chloroplast complete 
2.21.2.3.2.27421 OTU 2 seqs
prokMSA_id:3451 U21491 Chlorarachnion sp. CCMP 240 amoeboflagellate -- chloroplast
prokMSA_id:70779 U21491 Chlorarachnion CCMP240 chloroplast chloroplast complete 
2.21.2.3.2.27428 OTU 6 seqs
prokMSA_id:3457 V00159 Euglena gracilis euglenophycean alga -- chloroplast
prokMSA_id:3458 X12890 Euglena gracilis euglenophycean alga -- chloroplast
prokMSA_id:3459 X70810 Euglena gracilis euglenophycean alga -- chloroplast =
prokMSA_id:3460 X70810 Euglena gracilis euglenophycean alga -- chloroplast =rrnB
prokMSA_id:3461 X70810 Euglena gracilis euglenophycean alga -- chloroplast =rrnC
prokMSA_id:53039 NC_001603 Euglena gracilis chloroplast complete genome
2.21.2.3.2.2956 OTU 1 seq
prokMSA_id:26708 AF289254 Trachelomonas volvocina ; chloroplast chloroplast product
2.21.2.3.2.31029 OTU 2 seqs
prokMSA_id:39492 AF289241 Euglena geniculata ; chloroplast chloroplast product
prokMSA_id:77335 AY070251 Euglena myxocylindracea UTEX 1989 ; chloroplast chloroplast 
2.21.2.3.2.3638 OTU 1 seq
prokMSA_id:34641 AF289251 Phacus pleuronectes ; chloroplast chloroplast product
2.21.2.3.2.5677 OTU 1 seq
prokMSA_id:49945 AF445714 eukaryote clone SM2B11 ; plastid plastid product
2.21.2.3.2.9296 OTU 1 seq
prokMSA_id:44394 AF289158 rhodophyte PRD01a010B 
2.21.2.3.3 OCHROSPHAERA_SUBGROUP 8 seqs
2.21.2.3.3.18572 OTU 1 seq
prokMSA_id:47593 U70723 eukaryote OM270 
2.21.2.3.3.39803 OTU 7 seqs
prokMSA_id:3462 U32671 clone OM21
prokMSA_id:3465 X65101 Ochrosphaera sp. str. 181 haptophyte -- chloroplast
prokMSA_id:3466 X80390 Ochrosphaera neapolitana CCMP 593 haptophyte -- chloroplast
prokMSA_id:3467 X75518 Isochrysis sp. flagellate alga -- chloroplast
prokMSA_id:3468 X82156 Emiliania huxleyi str. Plymouth Marine Laborator PML 92D
prokMSA_id:48463 AF172719 Chrysochromulina polylepis ; chloroplast chloroplast product
prokMSA_id:72546 X99077 Ochrosphaera neapolitana plastid tRNAIle tRNAAla and 23S gen
2.21.2.3.4 PYRENOMONAS_SUBGROUP 16 seqs
2.21.2.3.4.12408 OTU 1 seq
prokMSA_id:29775 AF170713 Compsopogon coeruleus ; plastid plastid product
2.21.2.3.4.15930 OTU 1 seq
prokMSA_id:69457 AB073108 Chilomonas paramecium leucoplast 
2.21.2.3.4.34535 OTU 13 seqs
prokMSA_id:3470 X55015 Pyrenomonas salina cryptomonad -- chloroplast
prokMSA_id:3472 S73904 Cryptomonas phi str. F 2-flagellae cryptomonad -- chloroplas
prokMSA_id:25107 U70724 cryptomonad OM283 
prokMSA_id:51823 NC_000926 Guillardia theta chloroplast complete genome
prokMSA_id:56317 AB073109 Cryptomonas ovata plastid 
prokMSA_id:60252 AB073113 Proteomonas sulcata plastid 
prokMSA_id:60253 AB073112 Hemiselmis virescens plastid 
prokMSA_id:60255 AB073110 Chroomonas placoidea plastid 
prokMSA_id:69145 AB073111 Geminigera cryophila plastid 
prokMSA_id:69194 AB073114 Dinophysis acuminata plastid 
prokMSA_id:69410 AB073116 Dinophysis norvegica plastid 
prokMSA_id:69432 AF041468 Guillardia theta complete plastid genome
prokMSA_id:71043 AB073115 Dinophysis fortii plastid 
2.21.2.3.4.4618 OTU 1 seq
prokMSA_id:27542 AF170715 Flintiella sanguinaria ; plastid plastid product
2.21.2.3.5 PORPHYRA_SUBGROUP 6 seqs
2.21.2.3.5.12265 OTU 1 seq
prokMSA_id:3476 -- X81903 Glaucosphaera vacuolata str. SAG B 13.82 blue green alga
2.21.2.3.5.12260 OTU 1 seq
prokMSA_id:3473 X54299 Antithamnion sp. red alga -- chloroplast
2.21.2.3.5.12261 OTU 1 seq
prokMSA_id:3474 Z29521 Chondrus crispus red alga -- chloroplast
2.21.2.3.5.12264 OTU 1 seq
prokMSA_id:3475 Z18289 Palmaria palmata edible? red alga -- chloroplast
2.21.2.3.5.6578 OTU 1 seq
prokMSA_id:19992 AF170716 Bangia fuscopurpurea ; plastid plastid product
2.21.2.3.5.7816 OTU 1 seq
prokMSA_id:28521 AF170711 Chroothece richteriana ; plastid plastid product
2.21.2.3.6 CYANIDIUM_SUBGROUP 3 seqs
2.21.2.3.6.33736 OTU 3 seqs
prokMSA_id:3479 X52985 Cyanidium caldarium str. 14-1-1 red alga -- chloroplast
prokMSA_id:47684 AF356019 Rhodophyte NZ4 ; plastid plastid product
prokMSA_id:51285 AF170718 Cyanidium caldarium ; plastid plastid product
2.21.2.3.99 VARIOUS 6 seqs
2.21.2.3.99.31019 OTU 3 seqs
prokMSA_id:16609 AF170714 Stylonema alsidii ; plastid plastid product
prokMSA_id:47228 AF170712 Chroodactylon ramosum ; plastid plastid product
prokMSA_id:47632 AF170719 Rhodosorus marinus ; plastid plastid product
2.21.2.3.99.32081 OTU 3 seqs
prokMSA_id:52865 AF170717 Porphyra leucosticta ; plastid plastid product
prokMSA_id:53015 NC_000925 Porphyra purpurea chloroplast complete genome
prokMSA_id:69121 U38804 Porphyra purpurea chloroplast complete genome
2.21.2.4 GREEN_ALGAE_CHLOROPLASTS 27 seqs
2.21.2.4.12300 OTU 1 seq
prokMSA_id:3498 -- X15850 Chlamydomonas moewusii str. UTEX 97 mt+ green alga
2.21.2.4.12293 OTU 1 seq
prokMSA_id:3490 X76084 Nanochlorum eucaryotum green coccoidal alga -- chloroplast
2.21.2.4.12298 OTU 1 seq
prokMSA_id:3495 -- X65688 Chlorella protothecoides str. 211-7a green alga
2.21.2.4.12284 OTU 1 seq
prokMSA_id:3487 L39865 Chlamydomonas pallidostigmatica green alga -- chloroplast
2.21.2.4.17296 OTU 1 seq
prokMSA_id:38948 AF289252 Phacus skujai ; chloroplast chloroplast product
2.21.2.4.27644 OTU 2 seqs
prokMSA_id:3484 J01395 Chlamydomonas reinhardtii green alga -- chloroplast
prokMSA_id:79762 BK000554 TPA: Chlamydomonas reinhardtii chloroplast complete genome
2.21.2.4.27627 OTU 2 seqs
prokMSA_id:3481 X65099 Chlorella kessleri str. 211-11g green alga -- chloroplast
prokMSA_id:3488 D11346 Chlorella kessleri str. 211-11h green alga -- chloroplast
2.21.2.4.27672 OTU 2 seqs
prokMSA_id:3497 D11349 Chlorella saccharophila subsp. saccharophila str. 211-1d gre
prokMSA_id:71886 D11349 Chlorella saccharophila strain 211-1d chloroplast 
2.21.2.4.30093 OTU 2 seqs
prokMSA_id:32850 AJ222802 Prototheca wickerhamii 5.0 kb plastid fragment of genecluste
prokMSA_id:48130 AJ245645 Prototheca wickerhamii chloroplast genome
2.21.2.4.3095 OTU 1 seq
prokMSA_id:26799 U08345 Codium fragile chloroplast encoding chloroplast 
2.21.2.4.31456 OTU 2 seqs
prokMSA_id:31996 AF374190 Chlamydomonas dysosmos rrn16 ; chloroplast chloroplast produ
prokMSA_id:49287 AF394204 Chlamydomonas applanata ; chloroplast chloroplast product
2.21.2.4.31603 OTU 4 seqs
prokMSA_id:3482 X12742 Chlorella ellipsoidea str. IAM-C87 green alga -- chloroplast
prokMSA_id:3494 X65100 Chlorella mirabilis str. 748-I green alga -- chloroplast
prokMSA_id:3500 D11348 Chlorella saccharophila subsp. ellipsoidea str. 3.80 green a
prokMSA_id:70500 D11348 Chlorella saccharophila strain 3.80 chloroplast 
2.21.2.4.32183 OTU 6 seqs
prokMSA_id:3483 X65689 Chlorella sorokiniana str. 211-8k green alga -- chloroplast
prokMSA_id:3489 D11347 Chlorella vulgaris green alga -- chloroplast
prokMSA_id:3499 X16579 Chlorella vulgaris str. 211-11b green alga -- chloroplast
prokMSA_id:38828 AB001684 Chlorella vulgaris C-27 chloroplast complete 
prokMSA_id:49481 NC_001865 Chlorella vulgaris chloroplast complete genome
prokMSA_id:70155 D11347 Chlorella vulgaris strain 211-1e chloroplast 
2.21.2.4.6704 OTU 1 seq
prokMSA_id:20563 AF289245 Euglena tripteris ; chloroplast chloroplast product
2.21.2.5 CHAROPHYTA-EMBRYOPHYTA_CHLOROPLASTS 83 seqs
2.21.2.5.12866 OTU 1 seq
prokMSA_id:3540 X75519 Chara sp. stonewort green alga -- chloroplast
2.21.2.5.12843 OTU 1 seq
prokMSA_id:3538 X75522 Klebsormidium flaccidum charophyte alga -- chloroplast
2.21.2.5.12837 OTU 1 seq
prokMSA_id:3534 U24591 Selaginella apoda fern allies -- chloroplast
2.21.2.5.12839 OTU 1 seq
prokMSA_id:3536 U24596 Spirogyra maxima charophyte alga -- chloroplast
2.21.2.5.12878 OTU 1 seq
prokMSA_id:3546 X73670 Daucus carota carrot -- chloroplast
2.21.2.5.12869 OTU 1 seq
prokMSA_id:3542 X70938 Nicotiana plumbaginifolia str. wild curled-leaved tobacco;
2.21.2.5.16033 OTU 1 seq
prokMSA_id:45967 U67740 Bdallophyton americanum chloroplast 
2.21.2.5.20167 OTU 1 seq
prokMSA_id:39969 AF244551 Cycas revoluta ; chloroplast chloroplast product
2.21.2.5.2030 OTU 1 seq
prokMSA_id:35074 U67743 Cynomorium coccineum chloroplast 
2.21.2.5.21636 OTU 1 seq
prokMSA_id:72055 U67742 Mitrastema yamamotoi chloroplast 
2.21.2.5.25610 OTU 2 seqs
prokMSA_id:3530 U24584 Ephedra trifurca gymnosperm -- chloroplast
prokMSA_id:36243 AF244555 Gnetum leyboldii ; chloroplast chloroplast product
2.21.2.5.29638 OTU 2 seqs
prokMSA_id:3509 U24586 Juniperus virginiana gymnosperm -- chloroplast
prokMSA_id:19534 AF445656 eukaryote clone SM1B08 ; plastid plastid product
2.21.2.5.37587 OTU 63 seqs
prokMSA_id:3502 -- U12813 Nicotiana tabacum common tobacco; tobacco; American tobacco
prokMSA_id:3503 -- U12810 Nicotiana tabacum common tobacco; tobacco; American tobacco
prokMSA_id:3504 -- X51598 Pisum sativum str. cr. Progress No.9 pea; garden pea
prokMSA_id:3505 X15901 Oryza sativa str. cv. Nipponbare rice -- chloroplast
prokMSA_id:3506 U24580 Angiopteris evecta eusporangiate fern -- chloroplast
prokMSA_id:3510 X86563 Zea mays maize; corn; Indian corn -- chloroplast
prokMSA_id:3511 U24582 Cibotium glaucum Hawaiian tree fern -- chloroplast
prokMSA_id:3512 U24583 Doodia maxima leptosporangiate fern -- chloroplast
prokMSA_id:3514 -- V00165 Nicotiana tabacum common tobacco; tobacco; American tobacco
prokMSA_id:3516 -- D17510 Pinus thunbergiana Japanese black pine; green pine
prokMSA_id:3517 U24592 Sphagnum palustre bryophyte -- chloroplast
prokMSA_id:3519 -- U12811 Nicotiana tabacum common tobacco; tobacco; American tobacco
prokMSA_id:3521 U03555 Alnus incana hazel alder -- chloroplast
prokMSA_id:3523 -- U12812 Nicotiana tabacum common tobacco; tobacco; American tobacco
prokMSA_id:3524 X86563 Zea mays maize; corn; Indian corn -- chloroplast
prokMSA_id:3527 U24593 Equisetum arvense fern allies -- chloroplast
prokMSA_id:3529 M37430 Pisum sativum pea; garden pea -- chloroplast
prokMSA_id:3531 X04465 Marchantia polymorpha liverwort -- chloroplast
prokMSA_id:3532 M82900 Nicotiana plumbaginifolia str. wild curled-leaved tobacco;
prokMSA_id:3533 -- U12814 Nicotiana tabacum common tobacco; tobacco; American tobacco
prokMSA_id:3543 -- U12815 Nicotiana tabacum common tobacco; tobacco; American tobacco
prokMSA_id:3545 U24585 Isoetes melanopoda fern allies -- chloroplast
prokMSA_id:3548 Z00028 Zea mays maize; corn; Indian corn -- chloroplast
prokMSA_id:3549 U24589 Ophioglossum engelmannii eusporangiate fern -- chloroplast
prokMSA_id:3550 U24588 Lygodium japonicum leptosporangiate fern -- chloroplast
prokMSA_id:3551 Z00028 Zea mays maize; corn; Indian corn -- chloroplast
prokMSA_id:3552 L37580 Ricinis communis castor bean -- chloroplast
prokMSA_id:3553 -- U12809 Nicotiana tabacum common tobacco; tobacco; American tobacco
prokMSA_id:3554 -- U24594 Osmunda cinnamomea str. var. fokiensis cinnamon fern
prokMSA_id:18059 AF176637 Plastid transformation vector pMSK49 plastid targeting regio
prokMSA_id:33995 X55033 P.sativum chloroplast of the single operon
prokMSA_id:34845 AF244549 Adiantum pedatum ; chloroplast chloroplast product
prokMSA_id:40521 AF244563 Polytrichum commune ; chloroplast chloroplast product
prokMSA_id:41462 AF244561 Phaeoceros laevis ; chloroplast chloroplast product
prokMSA_id:42014 AF244550 Calypogeia muelleriana ; chloroplast chloroplast product
prokMSA_id:45714 NC_001666 Zea mays plastid complete genome
prokMSA_id:46050 NC_001319 Marchantia polymorpha chloroplast complete genome
prokMSA_id:46408 NC_002202 Spinacia oleracea plastid complete genome
prokMSA_id:46607 NC_001320 Oryza sativa japonica cultivar-group plastid complete genome
prokMSA_id:46790 Z00044 Nicotiana tabacum chloroplast genome 
prokMSA_id:48267 U76911 Carica papaya chloroplast chloroplast 
prokMSA_id:48948 AF244554 Ginkgo biloba ; chloroplast chloroplast product
prokMSA_id:51212 NC_001631 Pinus thunbergii chloroplast complete genome
prokMSA_id:52573 AF244560 Nymphaea tuberosa ; chloroplast chloroplast product
prokMSA_id:52836 AJ239003 Triticum aestivum L. chloroplast 
prokMSA_id:53001 AJ400848 Spinacia oleracea complete chloroplast genome
prokMSA_id:53024 NC_002693 Oenothera elata subsp. hookeri plastid complete genome
prokMSA_id:53526 AJ007728 Orobanche minor chloroplast trnVGAC trnIGAU pseudogene trnAU
prokMSA_id:53867 AP002983 Lotus japonicus chloroplast complete genome
prokMSA_id:54220 NC_001879 Nicotiana tabacum plastid complete genome
prokMSA_id:59839 NC_002762 Triticum aestivum chloroplast complete genome
prokMSA_id:59840 NC_002694 Lotus japonicus chloroplast complete genome
prokMSA_id:60254 AJ316582 Atropa belladonna complete chloroplast genome strain Ab5pkan
prokMSA_id:62969 AF526941 angiosperm clone T5-20 ; chloroplast chloroplast product
prokMSA_id:67563 AB042240 Triticum aestivum chloroplast complete genome
prokMSA_id:69031 Y18934 Solanum nigrum chloroplast tRNA-Ala tRNA-Ile tRNA-Val rps12 
prokMSA_id:69037 AJ271079 Oenothera elata subsp. hookeri chloroplast plastome I comple
prokMSA_id:69692 AP000423 Arabidopsis thaliana chloroplast genomic complete strain:Col
prokMSA_id:73572 NC_000932 Arabidopsis thaliana chloroplast complete genome
prokMSA_id:78765 AB087477 Anthoceros formosae chloroplast complete 
prokMSA_id:79024 AB086179 Anthoceros formosae chloroplast complete genome
prokMSA_id:79402 NC_004561 Atropa belladonna chloroplast complete genome
prokMSA_id:79471 NC_004543 Anthoceros formosae chloroplast complete genome
2.21.2.5.42701 OTU 4 seqs
prokMSA_id:3518 U24590 Psilotum nudum fern allies -- chloroplast
prokMSA_id:3525 U24595 Tmesipteris oblanceolata fern allies -- chloroplast
prokMSA_id:50506 NC_003386 Psilotum nudum chloroplast complete genome
prokMSA_id:74055 AP004638 Psilotum nudum chloroplast complete genome
2.21.2.5.625 OTU 1 seq
prokMSA_id:64370 AJ440719 Putative agent of rhinosporidiosis 
2.21.2.5.6899 OTU 1 seq
prokMSA_id:29047 U47845 Cytinus ruber chloroplast chloroplast 
2.21.4 GLOEOBACTER_GROUP 3 seqs
2.21.4.21318 OTU 1 seq
prokMSA_id:19077 AJ390438 soil PBS-II-1 
2.21.4.30206 OTU 2 seqs
prokMSA_id:3564 AF132790 Gloeobacter violaceus PCC 7421
prokMSA_id:3565 AF132791 Gloeobacter PCC8105 PCC 8105
2.21.5 ENVIRONMENTAL_CLONE_TM7_GROUP 1 seq
2.21.5.12173 OTU 1 seq
prokMSA_id:37526 AF268994 GC1 
2.25 FIBROBACTER_AND_ACIDOBACTERIUM 70 seqs
2.25.1 FIBROBACTER_SUBDIVISION 16 seqs
2.25.1.1 FIBROBACTER_GROUP 4 seqs
2.25.1.1.12957 OTU 1 seq
prokMSA_id:3581 L35548 Fibrobacter sp
2.25.1.1.12947 OTU 1 seq
prokMSA_id:3577 AF018454 clone 12-5
2.25.1.1.12968 OTU 1 seq
prokMSA_id:3591 L35547 Fibrobacter sp
2.25.1.1.20345 OTU 1 seq
prokMSA_id:63459 AJ496186 Fibrobacter succinogenes strain HM2
2.25.1.2 ENVIRONMENTAL_CLONE_OCS307_GROUP 12 seqs
2.25.1.2.13000 OTU 1 seq
prokMSA_id:29818 AF355046 delta Arctic95A-2 
2.25.1.2.12972 OTU 1 seq
prokMSA_id:3594 AF050596 clone WCHB1-15
2.25.1.2.13632 OTU 1 seq
prokMSA_id:3618 AF050595 clone WCHB1-06
2.25.1.2.13674 OTU 1 seq
prokMSA_id:3630 AF050597 clone WCHB1-01
2.25.1.2.13917 OTU 1 seq
prokMSA_id:23348 AF355043 delta Arctic95A-3 
2.25.1.2.16681 OTU 1 seq
prokMSA_id:68979 AY033318 MB13C05 ; tRNA-Ile and tRNA-Ala genes complete ; and 23S 
2.25.1.2.1677 OTU 1 seq
prokMSA_id:79575 AF382116 clone ZA3312c 
2.25.1.2.33605 OTU 3 seqs
prokMSA_id:3654 U34043 clone SAR 406
prokMSA_id:3657 U41450 clone OCS 307
prokMSA_id:60631 AF406544 Fibrobacter/Acidobacteria group clone AEGEAN_225 
2.25.1.2.764 OTU 1 seq
prokMSA_id:79412 AF382142 clone ZA3648c 
2.25.1.2.8738 OTU 1 seq
prokMSA_id:35861 AF355047 delta Arctic96B-7 
2.25.3 ACIDOBACTERIUM_SUBDIVISION 54 seqs
2.25.3.1 MOUNT_COOT-THA_ENVIRONMENTAL_CLONES_III 26 seqs
2.25.3.1.10005 OTU 1 seq
prokMSA_id:14398 AJ000985 DA040 
2.25.3.1.13313 OTU 1 seq
prokMSA_id:60572 AF407730 clone B90 
2.25.3.1.13345 OTU 1 seq
prokMSA_id:60585 AF407714 clone B11 
2.25.3.1.13397 OTU 1 seq
prokMSA_id:60599 AF407699 clone G10 
2.25.3.1.13737 OTU 1 seq
prokMSA_id:3667 AF013515 clone C002
2.25.3.1.13765 OTU 1 seq
prokMSA_id:3685 U81754 clone vadinHB76
2.25.3.1.13764 OTU 1 seq
prokMSA_id:3684 AF027004 clone OPB3
2.25.3.1.13749 OTU 1 seq
prokMSA_id:3677 AJ009495 clone SJA-149
2.25.3.1.13993 OTU 1 seq
prokMSA_id:76339 AJ519380 Holophaga sp. clone JG37-AG-74
2.25.3.1.14232 OTU 1 seq
prokMSA_id:75757 AJ519386 Holophaga sp. clone JG37-AG-109
2.25.3.1.15055 OTU 1 seq
prokMSA_id:60816 AY118153 Acidobacteria/Holophaga group clone Cart-N4 
2.25.3.1.15345 OTU 1 seq
prokMSA_id:76572 AJ519369 Holophaga sp. clone JG37-AG-39
2.25.3.1.16958 OTU 1 seq
prokMSA_id:16602 AJ292571 WD205 clone WD205
2.25.3.1.18821 OTU 1 seq
prokMSA_id:63237 AF523988 clone FW120 
2.25.3.1.18831 OTU 1 seq
prokMSA_id:63244 AF523980 clone FW14 
2.25.3.1.19155 OTU 1 seq
prokMSA_id:47645 AJ249099 SHA-18 
2.25.3.1.21436 OTU 1 seq
prokMSA_id:79283 AB099990 sequences clone: IheB3-42
2.25.3.1.30339 OTU 2 seqs
prokMSA_id:26745 AJ292582 WD254 clone WD254
prokMSA_id:31570 AJ292589 WD292 clone WD292
2.25.3.1.33788 OTU 2 seqs
prokMSA_id:58081 AF498753 Ellin371 
prokMSA_id:69911 AF498724 Ellin342 
2.25.3.1.41555 OTU 3 seqs
prokMSA_id:60581 AF407719 clone B27 
prokMSA_id:63235 AF523989 clone FW3 
prokMSA_id:63238 AF523987 clone FW112 
2.25.3.1.5108 OTU 1 seq
prokMSA_id:50491 AF465658 Acidobacterium group YNPRH5A 
2.25.3.1.976 OTU 1 seq
prokMSA_id:78832 AJ536863 Holophaga sp. clone JG30-KF-C5
2.25.3.2 ENVIRONMENTAL_RB_CLONES_GROUP 2 seqs
2.25.3.2.13779 OTU 1 seq
prokMSA_id:3696 AF130858 clone GFP1
2.25.3.2.13781 OTU 1 seq
prokMSA_id:3697 Z95720 clone RB30
2.25.3.6 ACBT.CAPSULATUM_GROUP 26 seqs
2.25.3.6.13546 OTU 1 seq
prokMSA_id:75632 AJ519388 Holophaga sp. clone JG37-AG-116
2.25.3.6.14304 OTU 1 seq
prokMSA_id:3730 X97098 clone TM2
2.25.3.6.15126 OTU 1 seq
prokMSA_id:16327 AF200698 Acidobacterium UA2 
2.25.3.6.17465 OTU 1 seq
prokMSA_id:61819 AF529350 Acidobacterium group clone CLs73 
2.25.3.6.18934 OTU 1 seq
prokMSA_id:56082 AF523895 clone RCP1-32 
2.25.3.6.21866 OTU 1 seq
prokMSA_id:56406 AF523979 clone FW92 
2.25.3.6.30501 OTU 2 seqs
prokMSA_id:31221 AF200699 Acidobacterium UA3 
prokMSA_id:61405 AY043842 Acidobacterium group clone SMS9.16WL 
2.25.3.6.33224 OTU 2 seqs
prokMSA_id:3704 D26171 Acidobacterium capsulatum str. 161
prokMSA_id:73903 D26171 Acidobacterium capsulatum Acidophilic chemoorganotrophic 
2.25.3.6.37525 OTU 2 seqs
prokMSA_id:46444 AJ295657 KF/GS-JG36-31 
prokMSA_id:77027 AJ519366 Holophaga sp. clone JG37-AG-13
2.25.3.6.39706 OTU 5 seqs
prokMSA_id:3735 AF047646 clone TRB82
prokMSA_id:39070 AJ292587 WD277 clone WD277
prokMSA_id:45591 AJ292578 WD228 clone WD228
prokMSA_id:58105 AF498719 Ellin337 
prokMSA_id:77776 AB089126 Acidobacteriaceae clone:Rs-M39
2.25.3.6.42035 OTU 2 seqs
prokMSA_id:42606 AJ292579 WD243 clone WD243
prokMSA_id:73733 AF498733 Ellin351 
2.25.3.6.42063 OTU 5 seqs
prokMSA_id:58126 AF498705 Ellin323 
prokMSA_id:74896 AJ534632 Acidobacterium group clone JG36-TzT-31
prokMSA_id:75133 AJ519365 Holophaga sp. clone JG37-AG-9
prokMSA_id:76986 AJ519371 Holophaga sp. clone JG37-AG-42
prokMSA_id:77412 AF524860 K-5b2 
2.25.3.6.42649 OTU 2 seqs
prokMSA_id:26225 AJ292588 WD281 clone WD281
prokMSA_id:72400 AF498727 Ellin345 
2.27 SPIROCHETES_AND_RELATIVES 512 seqs
2.27.1 BRACHYSPIRA_GROUP 54 seqs
2.27.1.33883 OTU 54 seqs
prokMSA_id:3750 U23033 Brachyspira hyodysenteriae str. PWS/A
prokMSA_id:3751 U14934 Brachyspira innocens str. AN 520:93 group II
prokMSA_id:3752 U23035 Brachyspira hyodysenteriae str. R1
prokMSA_id:3753 U14915 Brachyspira innocens str. AN 1023:90 group III
prokMSA_id:3754 U23029 Brachyspira hyodysenteriae str. 2818.5
prokMSA_id:3755 U14925 Brachyspira innocens str. AN 3706:90 group III
prokMSA_id:3756 U14931 Brachyspira hyodysenteriae str. AN 174:92
prokMSA_id:3758 U14919 Brachyspira innocens str. C 320 group III
prokMSA_id:3760 U14922 Brachyspira innocens str. C 109 group III
prokMSA_id:3761 U14927 Brachyspira innocens str. P 43 group IV
prokMSA_id:3762 M57741 Brachyspira hyodysenteriae str. B204 ATCC 31212
prokMSA_id:3763 U14928 Brachyspira innocens str. C 162 group IV
prokMSA_id:3768 U14930 Brachyspira hyodysenteriae str. B78
prokMSA_id:3770 U14920 Brachyspira innocens str. B256 group III
prokMSA_id:3771 U22838 Brachyspira innocens str. 155-20
prokMSA_id:3772 U14926 Brachyspira innocens str. C 555 group III
prokMSA_id:3776 U14921 Brachyspira innocens str. C 173 group III
prokMSA_id:3777 Z22781 Brachyspira aalborgi NCTC 11492
prokMSA_id:3779 U14916 Brachyspira innocens str. AN 26:93 group II
prokMSA_id:3781 U14918 Brachyspira innocens str. C 378 group III
prokMSA_id:3782 U14924 Brachyspira innocens str. AN 1004:90 group III
prokMSA_id:3783 U14933 Brachyspira innocens str. AN 983:90 group II
prokMSA_id:3784 U14935 Brachyspira innocens str. AN 167:90 group II
prokMSA_id:3785 U23036 Brachyspira hyodysenteriae str. NIV-1
prokMSA_id:3786 U14929 Brachyspira innocens str. AN 916:90 group IV
prokMSA_id:3788 U14932 Brachyspira hyodysenteriae str. B204
prokMSA_id:3789 AF172986 Brachyspira hyodysenteriae str. A4974
prokMSA_id:3791 U14923 Brachyspira innocens str. C 265 group III
prokMSA_id:3792 U14917 Brachyspira innocens str. C 301 group III
prokMSA_id:16876 AF228806 adhucomuHca09 
prokMSA_id:18811 AF228808 adhucomuHca25 
prokMSA_id:25199 AF228814 adhucomuHcc35 
prokMSA_id:25279 AF200693 Brachyspira aalborgi strain W1 
prokMSA_id:25827 AF228807 adhucomuHca20 
prokMSA_id:26030 AF228821 adhucomuTvb40 
prokMSA_id:27259 AF245121 Brachyspira sp. Cb104:95 
prokMSA_id:28079 AF245120 Brachyspira sp. A3077 
prokMSA_id:30878 AF228811 adhucomuHca76 
prokMSA_id:32489 AF228816 adhucomuHcc39 
prokMSA_id:32828 AF245122 Brachyspira sp. AN883:98 
prokMSA_id:37832 AF228810 adhucomuHca61 
prokMSA_id:37834 AF228812 adhucomuHcc07 
prokMSA_id:39956 AF228820 adhucomuTvb21 
prokMSA_id:42611 AF228818 adhucomuTva35 
prokMSA_id:43373 AF228819 adhucomuTvb03 
prokMSA_id:47721 AF228817 adhucomuTva17 
prokMSA_id:47728 AF228809 adhucomuHca41 
prokMSA_id:47881 AF228813 adhucomuHcc33 
prokMSA_id:49210 AF228822 adhucomuTvb72 
prokMSA_id:49836 AF245123 Brachyspira sp. AN2608:97 
prokMSA_id:72200 AF395882 Brachyspira aalborgi AL 
prokMSA_id:72651 AF395883 Brachyspira aalborgi JLL 
prokMSA_id:75479 AY155458 Brachyspira pilosicoli 
prokMSA_id:77935 AB079583 Brachyspira ibaraki strain:HIS24/11/99
2.27.2 BRV.ANDERSONII_GROUP 1 seq
2.27.2.14387 OTU 1 seq
prokMSA_id:3793 L31543 Brevinema andersonii str. FS47
2.27.3 SPIROCHAETA-TREPONEMA-BORRELIA_SUBDIVISION 418 seqs
2.27.3.1 SPI.HALOPHILA_GROUP 25 seqs
2.27.3.1.125 OTU 1 seq
prokMSA_id:79373 AJ431239 Cytophaga sp. BHI80-86 strain BHI80-86
2.27.3.1.14278 OTU 1 seq
prokMSA_id:37803 AF166259 Spironema culicis 
2.27.3.1.14388 OTU 1 seq
prokMSA_id:3799 M88722 Spirochaeta halophila str. RS1 ATCC 29478
2.27.3.1.14847 OTU 1 seq
prokMSA_id:3801 X97096 Spirochaeta sp. str. TM3
2.27.3.1.14854 OTU 1 seq
prokMSA_id:3806 AF104475 Spirochaeta Olavius loisae endosymbiont 4
2.27.3.1.14877 OTU 1 seq
prokMSA_id:3810 U80597 Spirochaeta smaragdinae SEBR 4228
2.27.3.1.14878 OTU 1 seq
prokMSA_id:3812 X62809 Spirochaeta thermophila DSM 6192
2.27.3.1.15364 OTU 1 seq
prokMSA_id:38610 AJ419823 Spirochaeta sp. clone za29
2.27.3.1.18423 OTU 1 seq
prokMSA_id:77624 AB088910 Treponema sp. clone:Rs-H09
2.27.3.1.18775 OTU 1 seq
prokMSA_id:63216 AF524010 clone FW20 
2.27.3.1.18777 OTU 1 seq
prokMSA_id:63217 AF524009 clone FW67 
2.27.3.1.19245 OTU 1 seq
prokMSA_id:77774 AB088897 Spirochaeta sp. clone:Rs-B68
2.27.3.1.19571 OTU 1 seq
prokMSA_id:62701 AF507855 Spirochaetaceae clone ML623J-23 
2.27.3.1.19622 OTU 1 seq
prokMSA_id:56171 AF454308 spirochete clone ML320J-13 
2.27.3.1.20389 OTU 1 seq
prokMSA_id:79117 AJ431240 Spirochaeta sp. BHI80-158 strain BHI80-158
2.27.3.1.20419 OTU 1 seq
prokMSA_id:79121 AJ431238 Cytophaga sp. BHI80-3 strain BHI80-3
2.27.3.1.30961 OTU 2 seqs
prokMSA_id:3804 X93927 Spirochaeta alkalica str. Z-7491 DSM 8900
prokMSA_id:38562 AF373921 Spirochaeta sp. ASpG1 
2.27.3.1.30958 OTU 2 seqs
prokMSA_id:3802 X93928 Spirochaeta africana str. Z-7692 DSM 8902
prokMSA_id:3807 X93926 Spirochaeta asiatica str. Z-7591 DSM 8901
2.27.3.1.32856 OTU 2 seqs
prokMSA_id:52112 AF357917 Spirochaeta sp. Grapes 
prokMSA_id:74347 AJ249227 DCE25 
2.27.3.1.42938 OTU 2 seqs
prokMSA_id:77700 AB088892 Treponema sp. clone:Rs-A16
prokMSA_id:77729 AB088873 Spirochaeta sp. clone:Rs-D16
2.27.3.1.5196 OTU 1 seq
prokMSA_id:66166 AJ488100 clone IIIB-9
2.27.3.2 TREPONEMA_GROUP 210 seqs
2.27.3.2.1 TRP.BRYANTII_SUBGROUP 7 seqs
2.27.3.2.1.14908 OTU 1 seq
prokMSA_id:3826 M71238 Treponema saccharophilum str. PB ATCC 43261
2.27.3.2.1.21671 OTU 1 seq
prokMSA_id:71422 AF357565 mpn-isolate group 17 
2.27.3.2.1.32168 OTU 4 seqs
prokMSA_id:3829 M57737 Treponema bryantii str. RUS-1 ATCC 33254
prokMSA_id:3830 AF001693 clone RC1
prokMSA_id:3831 AF001745 clone RF13
prokMSA_id:3833 AB009242 clone RFN95
2.27.3.2.1.7031 OTU 1 seq
prokMSA_id:42877 AF302940 Treponema pectinovorum OMZ831 
2.27.3.2.2 TRP.SOCRANSKII_SUBGROUP 55 seqs
2.27.3.2.2.14960 OTU 1 seq
prokMSA_id:3854 AF023044 Treponema V:19:D36 str. V:19:D36
2.27.3.2.2.14988 OTU 1 seq
prokMSA_id:3889 Y16568 Treponema brennaborense
2.27.3.2.2.14967 OTU 1 seq
prokMSA_id:3860 AF182837 Treponema 5:22:BH022 str. 5:22:BH022
2.27.3.2.2.14969 OTU 1 seq
prokMSA_id:3862 AF068335 Treponema Treponema clone RFS12
2.27.3.2.2.14991 OTU 1 seq
prokMSA_id:3892 X89049 str. sp40-12
2.27.3.2.2.16042 OTU 1 seq
prokMSA_id:68837 AF371928 clone p-2159-s959-3 
2.27.3.2.2.17431 OTU 1 seq
prokMSA_id:78106 AB088860 Treponema sp. clone:Rs-E01
2.27.3.2.2.17603 OTU 1 seq
prokMSA_id:78163 AB088859 Treponema sp. clone:Rs-A48
2.27.3.2.2.18270 OTU 1 seq
prokMSA_id:78226 AB088904 Treponema sp. clone:Rs-P12
2.27.3.2.2.19072 OTU 1 seq
prokMSA_id:78359 AB088884 Treponema sp. clone:Rs-J14
2.27.3.2.2.20097 OTU 1 seq
prokMSA_id:77899 AB088883 Treponema sp. clone:Rs-Q63
2.27.3.2.2.31763 OTU 4 seqs
prokMSA_id:17854 AF302939 Treponema parvum OMZ843 
prokMSA_id:30574 AF302938 Treponema parvum OMZ842 
prokMSA_id:36464 AF302937 Treponema parvum OMZ833 
prokMSA_id:49225 AF302941 Treponema parvum OMZ832 
2.27.3.2.2.32865 OTU 3 seqs
prokMSA_id:3852 Y09959 Treponema amylovorum
prokMSA_id:3855 AF023045 Treponema V:20:D62 str. V:20:D62
prokMSA_id:3856 AF023046 Treponema V:A:U7A str. V:A:U7A
2.27.3.2.2.33033 OTU 15 seqs
prokMSA_id:3838 AF033306 Treponema socranskii subsp. socranskii str. D56BRIII6 ATCC 3
prokMSA_id:3839 AB015887 Treponema socranskii subsp. socranskii str. 122C
prokMSA_id:3840 AB015888 Treponema socranskii subsp. socranskii str. 1166
prokMSA_id:3841 AB015889 Treponema socranskii subsp. socranskii str. 128B
prokMSA_id:3842 AB015890 Treponema socranskii subsp. socranskii str. 1267
prokMSA_id:3843 AB015891 Treponema socranskii subsp. buccale str. 351
prokMSA_id:3844 AB015892 Treponema socranskii subsp. buccale str. B418
prokMSA_id:3845 AB015893 Treponema socranskii subsp. buccale str. T10
prokMSA_id:3846 AF033303 Treponema Smibert-5 str. D120CR-1
prokMSA_id:3847 AF033308 Treponema socranskii subsp. '04' str. D11B-2
prokMSA_id:3848 AF056343 Treponema VI:G:G47 str. VI:G:G47
prokMSA_id:3849 AF056344 Treponema VI:F:C44 str. VI:F:C44
prokMSA_id:3850 AF033307 Treponema socranskii subsp. paredis ATCC 35535
prokMSA_id:3851 AF033305 Treponema socranskii subsp. buccale ATCC 35534
prokMSA_id:24210 AY005083 Treponema sp. 6:H:D15A-4 
2.27.3.2.2.33036 OTU 8 seqs
prokMSA_id:3861 X87140 Treponema maltophilum str. BR
prokMSA_id:3880 AF023038 Treponema IV:17B:C21 str. IV:17B:C21
prokMSA_id:3882 AF023040 Treponema IV:17C:GF6 str. IV:17C:GF6
prokMSA_id:3883 AF023041 Treponema IV:17D:D31 str. IV:17D:D31
prokMSA_id:3884 AF023042 Treponema IV:18:C9 str. IV:18:C9
prokMSA_id:3888 AF056342 Treponema IV:17E:D36 str. IV:17E:D36
prokMSA_id:38741 AJ131282 Treponema lecithinolyticum isolate PFB4G
prokMSA_id:63015 X87139 Treponema lecithinolytikum patient PFB4G
2.27.3.2.2.41344 OTU 4 seqs
prokMSA_id:26242 AB031998 Treponema clone RsDiSp12 
prokMSA_id:36987 AB032000 Treponema clone HsPySp16 
prokMSA_id:37517 AB031999 Treponema clone HsPySp15 
prokMSA_id:47422 AB031997 Treponema clone RsDiSp1 
2.27.3.2.2.41785 OTU 10 seqs
prokMSA_id:3876 AF068425 Treponema Treponema clone RFS105
prokMSA_id:3877 AF068429 Treponema Treponema clone RFS2
prokMSA_id:3878 AF068430 Treponema Treponema clone RFS66
prokMSA_id:3879 AF068432 Treponema Treponema clone RFS9
prokMSA_id:22641 AB032005 Treponema clone HsDiSp314 
prokMSA_id:29435 AB032003 Treponema clone HsPySp1 
prokMSA_id:30690 AB032001 Treponema clone RsDiSp3 
prokMSA_id:43411 AB032002 Treponema clone RsDiSp9 
prokMSA_id:46814 AB032004 Treponema clone HsPySp20 
prokMSA_id:77852 AB088858 Treponema sp. clone:Rs-G65
2.27.3.2.3 TRP.PALLIDUM_SUBGROUP 70 seqs
2.27.3.2.3.15489 OTU 1 seq
prokMSA_id:3916 L78125 unnamed organism
2.27.3.2.3.15494 OTU 1 seq
prokMSA_id:3918 AF056341 Treponema III:C:BA213 str. III:C:BA213
2.27.3.2.3.15458 OTU 1 seq
prokMSA_id:3906 AF023029 Treponema III:13:D94 str. III:13:D94
2.27.3.2.3.15519 OTU 1 seq
prokMSA_id:3927 Y08893 Treponema sp
2.27.3.2.3.15584 OTU 1 seq
prokMSA_id:3963 Y08894 Treponema sp
2.27.3.2.3.15563 OTU 1 seq
prokMSA_id:3949 L78126 str. 2-1498
2.27.3.2.3.16490 OTU 1 seq
prokMSA_id:46681 AF275918 AA14 
2.27.3.2.3.17054 OTU 1 seq
prokMSA_id:47380 AF426100 Treponema calligyrum 
2.27.3.2.3.30994 OTU 2 seqs
prokMSA_id:3964 M88726 Treponema pallidum str. Nichols
prokMSA_id:40086 AF426102 Treponema pallidum subsp. pertenue 
2.27.3.2.3.34274 OTU 30 seqs
prokMSA_id:3896 D85437 Treponema medium str. G7201
prokMSA_id:3929 AF033309 Treponema vincentii ATCC 35580
prokMSA_id:3930 AF033310 Treponema vincentii str. N9 ATCC 700013
prokMSA_id:3931 AF061347 Treponema I:Q:AT20 str. AT20
prokMSA_id:3932 AF061348 Treponema I:R:AF26 str. AF26
prokMSA_id:3933 AF061349 Treponema I:S:AT39 str. AT39
prokMSA_id:3934 AF061350 Treponema I:T:AT24 str. AT24
prokMSA_id:3935 AF061351 Treponema I:U:Y9 str. Y9
prokMSA_id:3938 AF023051 Treponema I:B:C7 str. I:B:C7
prokMSA_id:3939 AF023052 Treponema I:G:C1 str. I:G:C1
prokMSA_id:3940 AF023053 Treponema I:F:D13 str. I:F:D13
prokMSA_id:3941 AF023054 Treponema I:D:T31 str. I:D:T31
prokMSA_id:3942 AF023056 Treponema I:L:Y1 str. I:L:Y1
prokMSA_id:3943 AF023057 Treponema I:E:U17A str. I:E:U17A
prokMSA_id:3944 AF023059 Treponema I:J:T19 str. I:J:T19
prokMSA_id:3945 AF023060 Treponema I:K:T3 str. I:K:T3
prokMSA_id:3946 AF023062 Treponema I:M:G54 str. I:M:G54
prokMSA_id:3947 AF023063 Treponema I:N:D47 str. I:N:D47
prokMSA_id:3950 AF056337 Treponema I:8:G57 str. I:P:G57
prokMSA_id:3953 AF023055 Treponema I:G:T21 str. I:G:T21
prokMSA_id:3954 AJ010951 Treponema sp. str. ovine footrot
prokMSA_id:3955 AF182831 Treponema I:V:AU076 str. I:V:AU076
prokMSA_id:3956 AF182832 Treponema I:W:T040 str. I:W:T040
prokMSA_id:30723 AJ289172 E1-K2 
prokMSA_id:45933 AY005081 Treponema sp. 1:Z:AF068 oral clone AF068 
prokMSA_id:56392 AY119690 Treponema vincentii 
prokMSA_id:64386 AY119691 Treponema sp. UB1467 
prokMSA_id:71034 AY005082 Treponema sp. 1:AA:DW001 oral clone DW001 
prokMSA_id:71146 AJ289178 E1-K1 
prokMSA_id:72610 AF385499 Treponema sp. oral clone EW054 
2.27.3.2.3.34269 OTU 7 seqs
prokMSA_id:3905 AF023028 Treponema III:A:D24 str. III:A:D24
prokMSA_id:3917 AF056340 Treponema III:B:U8A str. III:B:U8A
prokMSA_id:3921 AF182833 Treponema III:F:AT004 str. III:F:AT004
prokMSA_id:3922 AF182836 Treponema 3:E:AT013 str. 3:E:AT013
prokMSA_id:3923 AF182838 Treponema 3:D:BQ032 str. 3:D:BQ032
prokMSA_id:3957 AF182835 Treponema 3:G:BB003 str. 3:G:BB003
prokMSA_id:59569 AY134898 Treponema sp. oral clone EX137 
2.27.3.2.3.35442 OTU 12 seqs
prokMSA_id:3898 AF139203 Treponema denticola ATCC 35405
prokMSA_id:3899 AF139204 Treponema denticola ATCC 35404
prokMSA_id:3907 AF023030 Treponema II:10:D12 str. II:10:D12
prokMSA_id:3908 AF023031 Treponema II:C:T1 str. II:C:T1
prokMSA_id:3909 AF023032 Treponema II:D:G93 str. II:D:G93
prokMSA_id:3911 AF023034 Treponema II:11:C3 str. II:11:C3
prokMSA_id:3912 AF023035 Treponema II:11:C57 str. II:11:C57
prokMSA_id:3913 AF023036 Treponema II:H:D11 str. II:H:D11
prokMSA_id:3914 AF023037 Treponema II:I:C53 str. II:I:C53
prokMSA_id:3915 D85438 Treponema denticola str. W ATCC 33520
prokMSA_id:36733 AF363634 Treponema sp. G179 complete 
prokMSA_id:64388 AY119692 Treponema denticola 
2.27.3.2.3.41305 OTU 2 seqs
prokMSA_id:3910 AF023033 Treponema II:11:U61 str. II:E:U61
prokMSA_id:3919 AF109070 str. 9-3143
2.27.3.2.3.41689 OTU 2 seqs
prokMSA_id:3951 AF056338 Treponema I:O:AF16 str. I:O:AF16
prokMSA_id:3952 AF056339 Treponema I:C:BA223 str. I:C:BA223
2.27.3.2.3.42725 OTU 6 seqs
prokMSA_id:57738 AF546878 Treponema sp. 2-1498 
prokMSA_id:57741 AF546877 Treponema sp. 9-3301 
prokMSA_id:57742 AF546876 Treponema sp. 5B 
prokMSA_id:57743 AF546873 Treponema sp. 1A 
prokMSA_id:57744 AF546874 Treponema sp. 3A 
prokMSA_id:57745 AF546875 Treponema sp. 4A 
2.27.3.2.3.9446 OTU 1 seq
prokMSA_id:73875 AF426101 Treponema refringens 
2.27.3.2.4 SPI.STENOSTREPTA_SUBGROUP 10 seqs
2.27.3.2.4.10053 OTU 1 seq
prokMSA_id:73922 AB084961 spirochete clone: NkS34
2.27.3.2.4.11924 OTU 1 seq
prokMSA_id:4004 AF068428 Treponema Treponema clone RFS84
2.27.3.2.4.11923 OTU 1 seq
prokMSA_id:4003 AF068422 Treponema Treponema clone RFS81
2.27.3.2.4.13011 OTU 1 seq
prokMSA_id:59907 AY133086 spirochete clone ccslm2126 
2.27.3.2.4.15587 OTU 1 seq
prokMSA_id:3966 AF050549 clone WCHB1-40
2.27.3.2.4.15588 OTU 1 seq
prokMSA_id:3967 AF050550 clone WCHB1-91
2.27.3.2.4.15589 OTU 1 seq
prokMSA_id:3968 AF050551 clone WCHB1-30
2.27.3.2.4.15596 OTU 1 seq
prokMSA_id:3984 AF068342 Treponema Treponema clone RFS6
2.27.3.2.4.16898 OTU 1 seq
prokMSA_id:78066 AB088895 Treponema sp. clone:Rs-A53
2.27.3.2.4.4724 OTU 1 seq
prokMSA_id:81100 AY214182 clone ZZ12C6 
2.27.3.2.5 SPI.SPMAST_SUBGROUP 5 seqs
2.27.3.2.5.11967 OTU 1 seq
prokMSA_id:4027 AF068418 Treponema Treponema clone RFS60
2.27.3.2.5.20856 OTU 1 seq
prokMSA_id:77955 AB088898 Treponema sp. clone:Rs-E91
2.27.3.2.5.29242 OTU 2 seqs
prokMSA_id:4015 X79548 Spirochaeta sp
prokMSA_id:4024 X89043 str. sp5-17
2.27.3.2.5.8954 OTU 1 seq
prokMSA_id:21434 AB062768 Treponema sp. clone:BCf1-01
2.27.3.2.6 STR.MPSP16_SUBGROUP 39 seqs
2.27.3.2.6.10058 OTU 1 seq
prokMSA_id:73924 AB084956 spirochete clone: NkS8
2.27.3.2.6.11986 OTU 1 seq
prokMSA_id:4038 X89044 str. sp5-18
2.27.3.2.6.12018 OTU 1 seq
prokMSA_id:4049 AF068345 Treponema Treponema clone CFS6
2.27.3.2.6.12016 OTU 1 seq
prokMSA_id:4047 AF068334 Treponema Treponema clone RFS11
2.27.3.2.6.12040 OTU 1 seq
prokMSA_id:4053 AF068423 Treponema Treponema clone RFS94
2.27.3.2.6.12130 OTU 1 seq
prokMSA_id:4082 X89052 str. mpsp16
2.27.3.2.6.12133 OTU 1 seq
prokMSA_id:4083 X89048 str. sp40-11
2.27.3.2.6.12127 OTU 1 seq
prokMSA_id:4080 X89047 str. sp40-8
2.27.3.2.6.12166 OTU 1 seq
prokMSA_id:4097 AF068415 Treponema Treponema clone RFS102
2.27.3.2.6.12167 OTU 1 seq
prokMSA_id:4098 AF068416 Treponema Treponema clone RFS52
2.27.3.2.6.12159 OTU 1 seq
prokMSA_id:4094 AF068405 Treponema Treponema clone ZAS89
2.27.3.2.6.12567 OTU 1 seq
prokMSA_id:4118 AF068347 Treponema Treponema clone CFS121
2.27.3.2.6.12566 OTU 1 seq
prokMSA_id:4117 AF068346 Treponema Treponema clone CFS124
2.27.3.2.6.12587 OTU 1 seq
prokMSA_id:4126 AF068424 Treponema Treponema clone RFS99
2.27.3.2.6.12589 OTU 1 seq
prokMSA_id:4127 AF068426 Treponema Treponema clone RFS18
2.27.3.2.6.12586 OTU 1 seq
prokMSA_id:4125 AF068419 Treponema Treponema clone RFS64
2.27.3.2.6.13032 OTU 1 seq
prokMSA_id:59914 AY133079 spirochete clone ccslm226 
2.27.3.2.6.16403 OTU 1 seq
prokMSA_id:69510 AB084955 spirochete clone: NkS7
2.27.3.2.6.16573 OTU 1 seq
prokMSA_id:70117 AB085163 spirochete clone: NkS-Oxy1
2.27.3.2.6.16769 OTU 1 seq
prokMSA_id:78014 AB088865 Treponema sp. clone:Rs-D46
2.27.3.2.6.17430 OTU 1 seq
prokMSA_id:78105 AB088866 Treponema sp. clone:Rs-D52
2.27.3.2.6.17850 OTU 1 seq
prokMSA_id:77582 AB088874 Treponema sp. clone:Rs-D40
2.27.3.2.6.18227 OTU 1 seq
prokMSA_id:78206 AB088911 Treponema sp. clone:Rs-J58
2.27.3.2.6.18416 OTU 1 seq
prokMSA_id:77621 AB088891 Treponema sp. clone:Rs-B29
2.27.3.2.6.19149 OTU 1 seq
prokMSA_id:31994 AB062832 clone:BCf6-15
2.27.3.2.6.19247 OTU 1 seq
prokMSA_id:77775 AB088864 Treponema sp. clone:Rs-E15
2.27.3.2.6.20854 OTU 1 seq
prokMSA_id:77953 AB088880 Treponema sp. clone:Rs-B10
2.27.3.2.6.20948 OTU 1 seq
prokMSA_id:77997 AB088907 Treponema sp. clone:Rs-B69
2.27.3.2.6.31460 OTU 3 seqs
prokMSA_id:4056 AJ009481 clone SJA-102
prokMSA_id:4131 AJ009476 clone SJA-69
prokMSA_id:4132 AJ009506 clone SJA-182
2.27.3.2.6.39770 OTU 3 seqs
prokMSA_id:69238 AB085166 spirochete clone: NkS-Oxy25
prokMSA_id:69543 AB084968 spirochete clone: NkS83
prokMSA_id:69779 AB084957 spirochete clone: NkS9
2.27.3.2.6.42718 OTU 2 seqs
prokMSA_id:70909 AB085164 spirochete clone: NkS-Oxy3
prokMSA_id:73490 AB084973 spirochete clone: NkS97
2.27.3.2.6.4519 OTU 1 seq
prokMSA_id:27500 AJ419824 Spirochaeta sp. clone kf612
2.27.3.2.6.7007 OTU 1 seq
prokMSA_id:35642 AB062846 clone:BCf9-14
2.27.3.2.6.853 OTU 1 seq
prokMSA_id:56589 AB084963 spirochete clone: NkS39
2.27.3.2.99 VARIOUS 24 seqs
2.27.3.2.99.41757 OTU 7 seqs
prokMSA_id:4043 X89050 str. mpsp2
prokMSA_id:4115 X89046 str. sp40-7
prokMSA_id:38586 AB062840 clone:BCf8-03
prokMSA_id:40667 AJ419821 Spirochaeta sp. clone rs438
prokMSA_id:74331 AB084954 spirochete clone: NkS5
prokMSA_id:74426 AB084965 spirochete clone: NkS50
prokMSA_id:78058 AB088890 Treponema sp. clone:Rs-C47
2.27.3.2.99.42525 OTU 17 seqs
prokMSA_id:4009 AF093251 Treponema ZAS-1 str. ZAS-1
prokMSA_id:4084 AF068337 Treponema Treponema clone RFS25
prokMSA_id:4085 AF068338 Treponema Treponema clone RFS21
prokMSA_id:4086 AF068340 Treponema Treponema clone RFS3
prokMSA_id:4087 AF068341 Treponema Treponema clone RFS41
prokMSA_id:4088 AF068343 Treponema Treponema clone RFS8
prokMSA_id:4099 AF068420 Treponema Treponema clone RFS7
prokMSA_id:4100 AF068421 Treponema Treponema clone RFS75
prokMSA_id:4101 AF068427 Treponema Treponema clone RFS82
prokMSA_id:4114 AF093252 Treponema ZAS-2 str. ZAS-2
prokMSA_id:25068 AB062825 clone:BCf5-01
prokMSA_id:32372 AB032008 Treponema clone HsDiSp320 
prokMSA_id:69148 AB084967 spirochete clone: NkS56
prokMSA_id:69426 AB084958 spirochete clone: NkS15
prokMSA_id:71891 AB084962 spirochete clone: NkS37
prokMSA_id:77606 AB088869 Treponema sp. clone:Rs-C35
prokMSA_id:78092 AB088908 Treponema sp. clone:Rs-D13
2.27.3.3 SPI.AURANTIA 1 seq
2.27.3.3.18920 OTU 1 seq
prokMSA_id:63294 AF523927 clone RCP1-64 
2.27.3.4 CRS.SP_STR_CP1 1 seq
2.27.3.4.12623 OTU 1 seq
prokMSA_id:4146 U42638 Cristispira sp. str. CP1
2.27.3.5 BORRELIA_GROUP 181 seqs
2.27.3.5.12665 OTU 1 seq
prokMSA_id:4159 X85198 Borrelia garinii str. SL20
2.27.3.5.12784 OTU 1 seq
prokMSA_id:4182 U42284 Borrelia anserina str. ES-1
2.27.3.5.34250 OTU 179 seqs
prokMSA_id:4154 U42286 Borrelia coriaceae str. Co53 ATCC 43381
prokMSA_id:4155 U42297 Borrelia persica str. UESV/340
prokMSA_id:4157 X85189 Borrelia burgdorferi str. 272
prokMSA_id:4158 X85197 Borrelia afzelii str. DK5
prokMSA_id:4160 X85202 Borrelia garinii str. DK29
prokMSA_id:4161 AJ009749 Borrelia garinii str. isolate Far01
prokMSA_id:4162 AJ009750 Borrelia garinii str. isolate Far02
prokMSA_id:4163 AJ009751 Borrelia garinii str. isolate Fis01
prokMSA_id:4164 AJ009752 Borrelia garinii str. isolate Far03
prokMSA_id:4165 AJ009753 Borrelia garinii str. isolate Far04
prokMSA_id:4168 D67018 Borrelia garinii str. 20047
prokMSA_id:4169 D67020 Borrelia tanukii str. OR2eL
prokMSA_id:4170 D67023 Borrelia tanukii str. Hk501
prokMSA_id:4171 AB007450 Borrelia garinii str. ChY13p
prokMSA_id:4172 U23211 Borrelia lonestari str. Texas 20
prokMSA_id:4173 X85194 Borrelia afzelii str. DK4
prokMSA_id:4174 X85199 Borrelia garinii str. PBi
prokMSA_id:4177 X85193 Borrelia garinii str. DK27
prokMSA_id:4180 X85195 Borrelia burgdorferi str. DK7
prokMSA_id:4183 M59293 Borrelia burgdorferi str. B31 ATCC 35210
prokMSA_id:4185 L36160 Borrelia burgdorferi str. 934U
prokMSA_id:4186 X98231 Borrelia burgdorferi
prokMSA_id:4187 X98230 Borrelia burgdorferi
prokMSA_id:4188 X98226 Borrelia burgdorferi
prokMSA_id:4189 X98228 Borrelia burgdorferi
prokMSA_id:4190 X98229 Borrelia burgdorferi
prokMSA_id:4195 X98232 Borrelia valaisiana str. VS116
prokMSA_id:4196 X98233 Borrelia valaisiana str. UK
prokMSA_id:4198 D67019 Borrelia afzelii str. HT61
prokMSA_id:4199 L46688 Borrelia andersonii
prokMSA_id:4201 X85203 Borrelia burgdorferi str. LIPITZ
prokMSA_id:4202 L46701 Borrelia andersonii
prokMSA_id:4203 L46695 Borrelia japonica
prokMSA_id:4205 U28503 Borrelia duttoni
prokMSA_id:4208 M89938 Borrelia burgdorferi str. VS219
prokMSA_id:4209 L39080 Borrelia burgdorferi str. 9MT
prokMSA_id:4210 AJ225165 Borrelia sp. str. VS116
prokMSA_id:4211 AB022140 Borrelia valaisiana str. CKA3a
prokMSA_id:4212 AB022141 Borrelia valaisiana str. CKA1
prokMSA_id:4213 D67021 Borrelia sp. str. Am501
prokMSA_id:4214 D67022 Borrelia turdi str. Ya501
prokMSA_id:4215 D67024 Borrelia turdi str. Ac502
prokMSA_id:4216 AF102056 Borrelia A14S str. A14S
prokMSA_id:4217 U44938 Borrelia burgdorferi str. 5MT
prokMSA_id:4218 AB022142 Borrelia valaisiana str. CKA2a
prokMSA_id:4219 AB022143 Borrelia valaisiana str. CKA4a
prokMSA_id:4220 AB016974 Borrelia 10MT str. 10MT
prokMSA_id:4221 L37837 Borrelia sp. str. FCB-1
prokMSA_id:4222 AF107356 Borrelia recurrentis str. A4
prokMSA_id:4223 AF107357 Borrelia recurrentis str. A5
prokMSA_id:4224 AF107358 Borrelia recurrentis str. A8
prokMSA_id:4225 AF107359 Borrelia recurrentis str. A10
prokMSA_id:4226 AF107360 Borrelia recurrentis str. A17
prokMSA_id:4227 AF107361 Borrelia recurrentis str. A11
prokMSA_id:4228 AF107362 Borrelia recurrentis str. A16
prokMSA_id:4229 AF107363 Borrelia duttonii str. Ku
prokMSA_id:4230 AF107364 Borrelia duttonii str. Ly
prokMSA_id:4231 AF107365 Borrelia duttonii str. La
prokMSA_id:4232 AF107366 Borrelia duttonii str. Ma
prokMSA_id:4233 AF107367 Borrelia recurrentis str. A1
prokMSA_id:4235 U42299 Borrelia turicatae str. M2007
prokMSA_id:4238 L46696 Borrelia japonica
prokMSA_id:4239 X57404 Borrelia burgdorferi str. B31 ATCC 35210
prokMSA_id:4240 D45192 Borrelia miyamotoi str. HT31 JCM 9579
prokMSA_id:4241 U42292 Borrelia hermsii str. HS1T ATCC 35209
prokMSA_id:4242 U42283 Borrelia crocidurae str. UESV/ACH
prokMSA_id:4243 U42285 Borrelia crocidurae str. UESV/626BAN
prokMSA_id:4244 U42287 Borrelia crocidurae str. UESV/917BAR
prokMSA_id:4245 U42289 Borrelia crocidurae str. UESV/1040DAK 24
prokMSA_id:4246 U42290 Borrelia crocidurae str. UESV/1045DAK 33
prokMSA_id:4247 U42291 Borrelia crocidurae str. UESV/MER
prokMSA_id:4248 U42295 Borrelia crocidurae str. UESV/1043DAK 28
prokMSA_id:4249 U42301 Borrelia crocidurae str. UESV/523SIS
prokMSA_id:4250 U42302 Borrelia crocidurae str. UESV/1096TEN
prokMSA_id:4251 U42288 Borrelia duttonii str. UESV/117DUTT
prokMSA_id:4252 U42293 Borrelia duttonii str. UR/BD94MIT
prokMSA_id:4254 U42294 Borrelia hispanica str. UESV/246
prokMSA_id:4255 U42300 Borrelia recurrentis str. A1
prokMSA_id:4256 AF116903 Borrelia sp
prokMSA_id:4257 M60969 Borrelia burgdorferi str. Sh-2-82
prokMSA_id:4258 L39081 Borrelia burgdorferi str. 935T
prokMSA_id:4259 AB030751 Borrelia tanukii str. NPNE1
prokMSA_id:4261 X85191 Borrelia afzelii str. DK21
prokMSA_id:4262 X85188 Borrelia afzelii str. DK2
prokMSA_id:4263 U44939 Borrelia burgdorferi str. 17Y
prokMSA_id:4265 X85204 Borrelia burgdorferi str. 297
prokMSA_id:4267 X85192 Borrelia afzelii str. DK3
prokMSA_id:4269 L40598 Borrelia japonica str. IKA2
prokMSA_id:4271 L46697 Borrelia afzelii
prokMSA_id:4272 L40597 Borrelia japonica str. HO14
prokMSA_id:4277 X85200 Borrelia burgdorferi str. MUL
prokMSA_id:4279 X85196 Borrelia burgdorferi str. Kipp
prokMSA_id:4280 X85201 Borrelia burgdorferi str. DUNKIRK
prokMSA_id:4282 X85190 Borrelia afzelii str. DK1
prokMSA_id:4283 L40596 Borrelia burgdorferi str. DN127
prokMSA_id:4285 AE000783 Borrelia burgdorferi
prokMSA_id:4286 AF091367 str. Z41293
prokMSA_id:4287 AF091368 str. Z41493
prokMSA_id:4288 AB022101 Borrelia sinica str. CMN3
prokMSA_id:4289 AB022144 Borrelia sinica str. CMN1a
prokMSA_id:4290 AB022145 Borrelia sinica str. CMN2
prokMSA_id:4291 AB022146 Borrelia sinica str. CWO1
prokMSA_id:4292 AJ224130 Borrelia burgdorferi str. CA446
prokMSA_id:4293 AJ224131 Borrelia burgdorferi str. CA28
prokMSA_id:4294 AJ224132 Borrelia burgdorferi str. CA31
prokMSA_id:4295 AJ224133 Borrelia burgdorferi str. CA13
prokMSA_id:4296 AJ224134 Borrelia burgdorferi str. CA8
prokMSA_id:4297 AJ224135 Borrelia burgdorferi str. CA29
prokMSA_id:4298 AJ224136 Borrelia burgdorferi str. CA2
prokMSA_id:4299 AJ224137 Borrelia burgdorferi str. CA19
prokMSA_id:4300 AJ224138 Borrelia burgdorferi str. 25015
prokMSA_id:4301 AJ224139 Borrelia burgdorferi str. CA128
prokMSA_id:4302 AJ224140 Borrelia burgdorferi str. CA55
prokMSA_id:4303 AJ224141 Borrelia burgdorferi str. DN127
prokMSA_id:4304 AJ224142 Borrelia burgdorferi str. NE49
prokMSA_id:19185 AF228031 Borrelia hermsii strain SB82 
prokMSA_id:19525 AB037123 Borrelia sp. KR1 
prokMSA_id:25006 AB037125 Borrelia sp. TA1 
prokMSA_id:25669 AF210138 Borrelia burgdorferi 
prokMSA_id:27079 AF210134 Borrelia coriaceae isolate Co53 
prokMSA_id:27842 AF307099 Borrelia parkeri isolate 6230 complete 
prokMSA_id:28678 AF228029 Borrelia hermsii strain MC77 
prokMSA_id:32451 AF210137 Borrelia parkeri 
prokMSA_id:33625 AY049949 Borrelia sp. EFL-S0100110 
prokMSA_id:38090 AF210136 Borrelia coriaceae isolate CA435 
prokMSA_id:43875 AF210135 Borrelia coriaceae isolate CA434 
prokMSA_id:44343 AB037126 Borrelia sp. TM1 
prokMSA_id:45102 AE001147 Borrelia burgdorferi section 33 of 70 of the complete genome
prokMSA_id:48535 AF228030 Borrelia hermsii strain NM84 
prokMSA_id:50797 AF307100 Borrelia parkeri isolate 6232 complete 
prokMSA_id:51974 AY024345 Borrelia sp. LB-2001 
prokMSA_id:52572 AB037124 Borrelia sp. KR3 
prokMSA_id:55311 AB091460 Borrelia valaisiana strain:OS115/01
prokMSA_id:55731 AB091817 Borrelia garinii strain:Tr77
prokMSA_id:55971 AB091457 Borrelia valaisiana strain:OG45/01
prokMSA_id:59693 AB091824 Borrelia garinii strain:Tr309
prokMSA_id:59694 AB091823 Borrelia burgdorferi strain:Tr293
prokMSA_id:59695 AB091821 Borrelia lusitaniae strain:Tr210
prokMSA_id:59696 AB091818 Borrelia afzelii strain:Tr96
prokMSA_id:59697 AB091820 Borrelia lusitaniae strain:Tr170
prokMSA_id:59698 AB091819 Borrelia lusitaniae strain:Tr161
prokMSA_id:59699 AB091822 Borrelia lusitaniae strain:Tr213
prokMSA_id:59700 AB091816 Borrelia afzelii strain:Tr38
prokMSA_id:59704 AB091815 Borrelia valaisiana strain:Tr29
prokMSA_id:59841 AB091465 Borrelia valaisiana strain:OS3/01
prokMSA_id:59842 AB091469 Borrelia valaisiana strain:OS66/01
prokMSA_id:59843 AB091463 Borrelia valaisiana strain:OR5/01
prokMSA_id:59846 AB091456 Borrelia valaisiana strain:OC1/01
prokMSA_id:60001 AB091468 Borrelia valaisiana strain:OS49
prokMSA_id:60002 AB091467 Borrelia valaisiana strain:OS42
prokMSA_id:60004 AB091461 Borrelia valaisiana strain:OM58/01
prokMSA_id:60005 AB091459 Borrelia valaisiana strain:OM50
prokMSA_id:60010 AB091458 Borrelia valaisiana strain:OM43
prokMSA_id:64683 NC_001318 Borrelia burgdorferi complete genome
prokMSA_id:71584 AB091462 Borrelia valaisiana strain:OM92/01
prokMSA_id:72227 AB091464 Borrelia valaisiana strain:OS28/01
prokMSA_id:73630 AF497996 Borrelia sp. I-77 
prokMSA_id:74591 AB091466 Borrelia valaisiana strain:OS31
prokMSA_id:76818 AY166715 Borrelia lonestari 
prokMSA_id:79095 AF467973 Borrelia sp. BC-1 
prokMSA_id:79116 AF467976 Borrelia sp. TXW-1 
prokMSA_id:79119 AF467964 Borrelia sp. MI-2 
prokMSA_id:79150 AF467967 Borrelia sp. MI-8 
prokMSA_id:79173 AF477989 Borrelia burgdorferi strain BbDM 
prokMSA_id:79174 AF467970 Borrelia sp. SCGT-10 
prokMSA_id:79226 AF467969 Borrelia sp. SCGT-8a 
prokMSA_id:79244 AF467966 Borrelia sp. MI-6 
prokMSA_id:79256 AF467961 Borrelia sp. SCI-2 
prokMSA_id:79285 AF467960 Borrelia sp. SM-1 
prokMSA_id:79303 AF467959 Borrelia sp. SI-10 
prokMSA_id:79337 AF467958 Borrelia sp. SI-1 
prokMSA_id:79357 AF467974 Borrelia sp. MOK-3a 
prokMSA_id:79368 AF467975 Borrelia sp. MOS-1b 
prokMSA_id:79408 AF467968 Borrelia sp. MI-9 
prokMSA_id:79467 AF467963 Borrelia sp. FD-1 
prokMSA_id:79478 AF467957 Borrelia sp. B31 
prokMSA_id:79496 AF467962 Borrelia sp. AI-1 
prokMSA_id:79528 AF467972 Borrelia sp. MOD-5 
prokMSA_id:79595 AF477987 Borrelia burgdorferi strain BbDF 
2.27.4 LEPTOSPIRA_SUBDIVISION 39 seqs
2.27.4.1 LEPTOSPIRA_GROUP 38 seqs
2.27.4.1.1 LPS.INTERROGANS_SUBGROUP 22 seqs
2.27.4.1.1.13735 OTU 1 seq
prokMSA_id:67836 AY082470 spirochete clone 44a-B1-48 
2.27.4.1.1.14201 OTU 1 seq
prokMSA_id:4354 U12672 Leptospira santarosai str. LT81 isolate SA39
2.27.4.1.1.35420 OTU 14 seqs
prokMSA_id:4305 Z21649 Leptospira santarosai str. Shermani 1342K ATCC 43286
prokMSA_id:4306 U12670 Leptospira borgpetersenii str. Hardjo bovis/Sponselee isolat
prokMSA_id:4307 U12673 Leptospira weilii str. Sarmin isolate WB46
prokMSA_id:4335 Y19243 Leptospira fainei str. SSI 5402-98
prokMSA_id:4342 U12677 Leptospira weilii str. Worsfold isolate WA 52
prokMSA_id:4343 Z21637 Leptospira weilii str. Celledoni isolate WA 45 ATCC 43285
prokMSA_id:4344 Z21648 Leptospira meyeri str. Ranarum ICF ATCC 43287
prokMSA_id:4346 Z21634 Leptospira inadai str. lyme ATCC 43289
prokMSA_id:4347 Z21635 Leptospira noguchii str. Panama CZ 214 ATCC 43288
prokMSA_id:4348 Z21630 Leptospira borgpetersenii str. Veldrat Bataviae 46 ATCC 4329
prokMSA_id:4349 U60594 Leptospira fainei str. Hurstbridge
prokMSA_id:4351 U12676 Leptospira weilii str. Celledoni isolate WA 45 ATCC 43285
prokMSA_id:4359 C. Z21628 Leptospira kirschneri str. cynopteri 3522
prokMSA_id:65605 AY034037 Leptospira weilii strain Ecochallenge 
2.27.4.1.1.39861 OTU 6 seqs
prokMSA_id:4310 Z12817 Leptospira interrogans str. icterohaemorrhagiae RGA
prokMSA_id:4333 X17547 Leptospira borgpetersenii str. Moulton serovar canicola
prokMSA_id:4357 U12671 Leptospira noguchii str. Fort Bragg isolate NB36
prokMSA_id:58028 AE011471 Leptospira interrogans serovar lai str. 56601 chromosome I s
prokMSA_id:58029 AE011412 Leptospira interrogans serovar lai str. 56601 chromosome I s
prokMSA_id:58052 NC_004342 Leptospira interrogans serovar lai str. 56601 chromosome I c
2.27.4.1.2 LPS.BIFLEXA_SUBGROUP 16 seqs
2.27.4.1.2.33534 OTU 16 seqs
prokMSA_id:4360 M34261 Leptospira sp. str. A-183
prokMSA_id:4370 Z21629 Leptospira biflexa str. Porto
prokMSA_id:4372 Z26969 Leptospira biflexa str. Tororo ATCC 23583
prokMSA_id:4373 Z98589 Leptospira biflexa subsp. Tororo str. mutant 1/1993
prokMSA_id:4374 Z98592 Leptospira biflexa subsp. Tororo str. mutant 2/1993
prokMSA_id:4375 Z98593 Leptospira biflexa subsp. Tororo str. mutant 2/1994
prokMSA_id:4376 Z98587 Leptospira biflexa subsp. Tororo str. mutant 3/1993
prokMSA_id:4377 Z98588 Leptospira biflexa subsp. Tororo str. mutant 3/1994
prokMSA_id:4378 Z98590 Leptospira biflexa subsp. Tororo str. mutant 6/1993
prokMSA_id:4379 Z98591 Leptospira biflexa subsp. Tororo str. mutant 6/1994
prokMSA_id:4380 Z26970 Leptospira biflexa str. Tororo parent strain
prokMSA_id:4381 Z21633 Leptospira biflexa
prokMSA_id:4382 Z21631 Leptospira biflexa
prokMSA_id:4383 Z12821 Leptospira biflexa str. patoc Patoc 1
prokMSA_id:4384 Z21638 Leptospira wolbachii str. CDC Biflexa ATCC 43284
prokMSA_id:32731 AF167353 Leptospira meyeri 
2.27.4.2 LEPTONEMA_GROUP 1 seq
2.27.4.2.14314 OTU 1 seq
prokMSA_id:4396 Z21632 Leptonema illini str. 3055
2.28 PROTEOBACTERIA 9157 seqs
2.28.1 ALPHA_SUBDIVISION 2343 seqs
2.28.1.1 RDV.SALINARUM_GROUP 3 seqs
2.28.1.1.14318 OTU 1 seq
prokMSA_id:4399 D14432 Rhodovibrio salinarum NCIMB 2243
2.28.1.1.17462 OTU 1 seq
prokMSA_id:62473 AJ318524 Rhodovibrio sodomensis strain SG3105
2.28.1.1.18176 OTU 1 seq
prokMSA_id:70396 AF280850 mle1-13 
2.28.1.2 RHODOPILA_GROUP 174 seqs
2.28.1.2.2 RSC.THIOSULFATOPHILUS_SUBGROUP 1 seq
2.28.1.2.2.14643 OTU 1 seq
prokMSA_id:4404 AF173825 clone LB3-94
2.28.1.2.3 RPL.GLOBIFORMIS_SUBGROUP 39 seqs
2.28.1.2.3.14675 OTU 1 seq
prokMSA_id:4410 D86513 Rhodopila globiformis str. 7950 DSM 161
2.28.1.2.3.14685 OTU 1 seq
prokMSA_id:4417 D86512 Acidosphaera rubrifaciens str. HS-AP3
2.28.1.2.3.14681 OTU 1 seq
prokMSA_id:4415 D85828 Craurococcus roseus str. NS130
2.28.1.2.3.14679 OTU 1 seq
prokMSA_id:4413 AF170742 Paracraurococcus QSSC5-3 str. QSSC5-3
2.28.1.2.3.16195 OTU 1 seq
prokMSA_id:77305 AY167826 Roseomonas sp. SAFR-014 
2.28.1.2.3.17437 OTU 1 seq
prokMSA_id:55243 AJ488505 Muricoccus roseus 
2.28.1.2.3.17644 OTU 1 seq
prokMSA_id:78172 AB089098 alpha clone:Rs-H51
2.28.1.2.3.19403 OTU 1 seq
prokMSA_id:41076 AF391980 thermal soil clone YNPFFP86 
2.28.1.2.3.19523 OTU 1 seq
prokMSA_id:63335 AF523877 clone RCP2-88 
2.28.1.2.3.19525 OTU 1 seq
prokMSA_id:63336 AF523875 clone RCP2-10 
2.28.1.2.3.20425 OTU 1 seq
prokMSA_id:33392 AF376024 Acidisphaera sp. NO-15 
2.28.1.2.3.26359 OTU 8 seqs
prokMSA_id:24986 AF227855 str. 96446 
prokMSA_id:26143 AF227831 str. 47076 
prokMSA_id:59735 AF538712 Roseomonas sp. MDA5527 
prokMSA_id:60464 AF533359 Roseomonas sp. NML97-0121 
prokMSA_id:60996 AF531769 Alpha 1461A 
prokMSA_id:70407 AF533360 Roseomonas sp. NML98-0157 
prokMSA_id:74557 AF533358 Roseomonas sp. NML98-0009 
prokMSA_id:75079 AY150051 Roseomonas gilardii strain E9464 
2.28.1.2.3.2689 OTU 1 seq
prokMSA_id:42326 AJ315073 isolate LMG19505
2.28.1.2.3.29796 OTU 2 seqs
prokMSA_id:60580 AF407720 clone B35 
prokMSA_id:60590 AF407709 clone G62 
2.28.1.2.3.3003 OTU 1 seq
prokMSA_id:64695 AF513983 Leahibacter roseus 
2.28.1.2.3.30773 OTU 2 seqs
prokMSA_id:40191 AJ295648 KF-JG30-C23 
prokMSA_id:73222 AJ295646 KF-JG30-B10 
2.28.1.2.3.3689 OTU 1 seq
prokMSA_id:64742 AJ488504 Teichococcus ludipueritiae 
2.28.1.2.3.3872 OTU 1 seq
prokMSA_id:81029 AY192273 alpha clone W2b-8C 
2.28.1.2.3.38734 OTU 2 seqs
prokMSA_id:63602 AY043384 AU2539 
prokMSA_id:75850 AY150047 Roseomonas cervicalis strain ATCC 49957 
2.28.1.2.3.42320 OTU 3 seqs
prokMSA_id:60463 AF533357 Roseomonas sp. NML94-0193 
prokMSA_id:60474 AF533352 Roseomonas gilardii 
prokMSA_id:75313 AY150045 Roseomonas gilardii strain ATCC 49956 
2.28.1.2.3.42321 OTU 2 seqs
prokMSA_id:60465 AF533355 Roseomonas genomospecies 4 
prokMSA_id:75114 AY150048 Roseomonas genomospecies 4 strain ATCC 49959 
2.28.1.2.3.42846 OTU 2 seqs
prokMSA_id:55753 AF533356 Roseomonas genomospecies 5 
prokMSA_id:76334 AY150049 Roseomonas genomospecies 5 strain ATCC 49960 
2.28.1.2.3.4657 OTU 1 seq
prokMSA_id:26912 AJ295647 KF-JG30-B12 
2.28.1.2.3.5324 OTU 1 seq
prokMSA_id:58321 AY140238 Gram-negative heterotrophic acidophile Y008 
2.28.1.2.3.6177 OTU 1 seq
prokMSA_id:42768 AJ290043 GKS2-218 
2.28.1.2.4 ABA.ACETI_SUBGROUP 101 seqs
2.28.1.2.4.11540 OTU 1 seq
prokMSA_id:21795 AF465654 alpha YNPRH71B 
2.28.1.2.4.14677 OTU 1 seq
prokMSA_id:4411 Y07647 DA004 clone vii
2.28.1.2.4.14785 OTU 1 seq
prokMSA_id:4442 AF127394 Acetobacter sp. str. SRI1939
2.28.1.2.4.14793 OTU 1 seq
prokMSA_id:4446 Y07583 clone DA007
2.28.1.2.4.14791 OTU 1 seq
prokMSA_id:4445 AF050533 clone WCHB1-87
2.28.1.2.4.14857 OTU 1 seq
prokMSA_id:4464 X82290 Gluconobacter frateurii IFO 3264
2.28.1.2.4.15332 OTU 1 seq
prokMSA_id:46484 AB032351 Acetobacter lovaniensis 
2.28.1.2.4.17398 OTU 1 seq
prokMSA_id:32348 AJ292602 WD271 clone WD271
2.28.1.2.4.21376 OTU 1 seq
prokMSA_id:32874 AJ292606 WD295 clone WD295
2.28.1.2.4.29336 OTU 2 seqs
prokMSA_id:41257 AB032352 Acetobacter peroxydans 
prokMSA_id:58365 AJ419836 Acetobacter peroxydans strain LMG 1633
2.28.1.2.4.30804 OTU 4 seqs
prokMSA_id:4418 X71863 Acetobacter pasteurianus str. LMD 22.1 LMG 1262
prokMSA_id:4421 AJ001632 Acetobacter pomorum str. LTH 2458 DSM 11825
prokMSA_id:58366 AJ419835 Acetobacter pomorum strain LMG 18848
prokMSA_id:58367 AJ419834 Acetobacter pasteurianus strain LMG 1629
2.28.1.2.4.30861 OTU 3 seqs
prokMSA_id:4426 D30770 Acidomonas methanolica str. MB 58 IMET 10945
prokMSA_id:4470 X77468 Acidomonas methanolica str. MB 58 IMET 10945
prokMSA_id:4471 AF127398 Acidomonas methanolica str. SRI1214
2.28.1.2.4.31371 OTU 3 seqs
prokMSA_id:22265 AB052713 Acetobacter roseisyzygii strain:22F-1B
prokMSA_id:28838 AB052712 Acetobacter roseisyzygii strain:9H-2
prokMSA_id:48133 AB052714 Acetobacter roseisyzygii strain:1B-M19C
2.28.1.2.4.31785 OTU 4 seqs
prokMSA_id:4427 X73820 Gluconobacter oxydans subsp. oxydans DSM 3503
prokMSA_id:4428 AF127396 Gluconobacter oxydans str. SRI1995
prokMSA_id:72941 X73820 Gluconobacter oxydans 
prokMSA_id:82086 AY206688 Gluconobacter oxydans strain 39PCAac1 
2.28.1.2.4.32754 OTU 14 seqs
prokMSA_id:4419 Y14694 Acetobacter intermedius str. TF2 DSM 11804
prokMSA_id:4420 AB016865 Acetobacter sp
prokMSA_id:4423 X75620 Gluconacetobacter hansenii NCIMB 8746
prokMSA_id:4424 AF127403 str. IFR101
prokMSA_id:4450 AJ012697 Acetobacter intermedius str. ZIM B025 JKD
prokMSA_id:4454 Z21936 Gluconacetobacter europaeus str. DES11 DSM 6160
prokMSA_id:4455 Y15289 Acetobacter europaeus str. JK2
prokMSA_id:4465 AJ007698 Gluconacetobacter xylinus subsp. sucrofermentans str. BPR200
prokMSA_id:4466 AF062475 Acetobacter ITDI2.1 str. ITDI2.1
prokMSA_id:21095 AJ251110 Gluconacetobacter entanii strain LTH4560
prokMSA_id:56605 AJ316550 Gluconacetobacter sp. LMG 1689 
prokMSA_id:71473 X75620 A.hansenii 
prokMSA_id:72244 Z21936 A.europaeus 
prokMSA_id:73040 AJ012466 Acetobacter sp. strain LMG 1582
2.28.1.2.4.32955 OTU 6 seqs
prokMSA_id:17998 AF459454 Halobharath swaminathanianus strain PA 51 
prokMSA_id:26550 AB035416 Asaia siamensis 
prokMSA_id:35660 AB025929 Asaia bogorensis strain:86
prokMSA_id:43009 AF459455 Halobharath swaminathanianus strain PA 12 
prokMSA_id:47931 AB025931 Asaia bogorensis strain:90
prokMSA_id:52420 AB025928 Asaia bogorensis strain:71
2.28.1.2.4.34149 OTU 6 seqs
prokMSA_id:4456 X80775 Gluconobacter cerinus IFO 3267
prokMSA_id:4457 AB024492 Gluconobacter asaii IFO 3275
prokMSA_id:4472 X80165 Gluconobacter asaii IFO 3276
prokMSA_id:28635 AB063287 Gluconobacter cerinus strain:IFO 3276
prokMSA_id:30702 AB063288 Gluconobacter cerinus strain:IAM 1832
prokMSA_id:43353 AB063286 Gluconobacter cerinus strain:IFO 3267
2.28.1.2.4.34141 OTU 20 seqs
prokMSA_id:4429 X75617 Gluconacetobacter liquefaciens IFO 12388
prokMSA_id:4430 AF127413 Gluconacetobacter sacchari str. IF9645
prokMSA_id:4431 AF127412 Gluconacetobacter sacchari str. IF2-6
prokMSA_id:4432 AF127411 Gluconacetobacter sacchari str. IF9701
prokMSA_id:4433 AF127410 Gluconacetobacter sacchari str. SRI1953
prokMSA_id:4435 AF127408 Gluconacetobacter sacchari str. SRI1853
prokMSA_id:4436 AF127407 Gluconacetobacter sacchari str. SRI1794
prokMSA_id:4437 AF127406 Gluconacetobacter sacchari str. SRI1216
prokMSA_id:4439 AF127404 Gluconacetobacter sacchari str. SRI1951
prokMSA_id:4440 AF127400 str. SRI1941
prokMSA_id:4441 AF127395 Gluconacetobacter liquefaciens str. SRI1994
prokMSA_id:4443 AF127393 Gluconacetobacter liquefaciens str. SRI1957
prokMSA_id:4444 AF127391 Gluconacetobacter liquefaciens str. SRI244
prokMSA_id:4458 X75618 Gluconacetobacter diazotrophicus ATCC 49037
prokMSA_id:4459 AF127402 Gluconacetobacter diazotrophicus str. SRI1205
prokMSA_id:4460 AF127401 Gluconacetobacter diazotrophicus str. SRI1206
prokMSA_id:4461 AF127397 Gluconacetobacter diazotrophicus str. SRI1212
prokMSA_id:4462 AF127392 Gluconacetobacter diazotrophicus str. SRI1990
prokMSA_id:72097 X75617 A.liquefaciens 
prokMSA_id:73674 X75618 A.diazotrophicus 
2.28.1.2.4.38378 OTU 4 seqs
prokMSA_id:25818 AB052706 Acetobacter orientalis strain:21F-2
prokMSA_id:38754 AB052707 Acetobacter orientalis strain:B-7SC
prokMSA_id:39658 AB052709 Acetobacter orientalis strain:1B-M18A
prokMSA_id:48935 AB052708 Acetobacter orientalis strain:4B-S16D
2.28.1.2.4.40131 OTU 17 seqs
prokMSA_id:4453 AF127399 Acetobacter aceti str. SRI1321
prokMSA_id:18427 AB032353 Acetobacter indonesiensis strain:LMG 1571
prokMSA_id:22182 AB032349 Acetobacter estunensis 
prokMSA_id:25708 AB052715 Acetobacter indonesiensis strain:1B-M19D
prokMSA_id:27422 AB052716 Acetobacter tropicalis strain:Y-1BM
prokMSA_id:29322 AB052710 Acetobacter cibinongensis strain:4H-1
prokMSA_id:34202 AB032354 Acetobacter tropicalis strain:NRIC 0312 isolate:No.3
prokMSA_id:34622 AB032355 Acetobacter tropicalis strain:NRIC 0312 isolate:No.39
prokMSA_id:41554 AB052711 Acetobacter cibinongensis strain:1BM-18C
prokMSA_id:51781 AB032350 Acetobacter orleanensis 
prokMSA_id:56023 AJ419844 Acetobacter malorum strain LMG 1746
prokMSA_id:58362 AJ419845 Acetobacter orleanensis strain LMG 1583
prokMSA_id:58364 AJ419842 Acetobacter tropicalis strain LMG 1663
prokMSA_id:58368 AJ419843 Acetobacter cerevisiae strain LMG 1625
prokMSA_id:58369 AJ419841 Acetobacter indonesiensis strain LMG 1588
prokMSA_id:58372 AJ419839 Acetobacter estunensis strain LMG 1572
prokMSA_id:58373 AJ419838 Acetobacter estunensis strain LMG 1626
2.28.1.2.4.40796 OTU 2 seqs
prokMSA_id:4438 AF127405 Gluconacetobacter sacchari str. SRI1230
prokMSA_id:36976 AF192761 Acetobacter azotocaptans 
2.28.1.2.4.41295 OTU 2 seqs
prokMSA_id:4452 D30768 Acetobacter aceti JCM 7641
prokMSA_id:4469 X74066 Acetobacter aceti NCIMB 8621
2.28.1.2.4.42833 OTU 3 seqs
prokMSA_id:67745 AB056321 Kozakia baliensis strain:Yo-3
prokMSA_id:67747 AB056319 Kozakia baliensis strain:Wa-5
prokMSA_id:67750 AB056318 Kozakia baliensis strain:Ri-1
2.28.1.2.4.5460 OTU 1 seq
prokMSA_id:58371 AJ419840 Acetobacter aceti strain LMG 1531
2.28.1.2.4.8185 OTU 1 seq
prokMSA_id:44239 AJ292611 WD2108 clone WD2108
2.28.1.2.5 ACDP.CRYPTUM_SUBGROUP 33 seqs
2.28.1.2.5.14890 OTU 1 seq
prokMSA_id:4478 AF027047 clone OPB40
2.28.1.2.5.14892 OTU 1 seq
prokMSA_id:4479 D86511 Acidiphilium acidophilum ATCC 27807
2.28.1.2.5.14929 OTU 1 seq
prokMSA_id:4491 D30771 Acidocella aminolytica str. 101 JCM 8796
2.28.1.2.5.14936 OTU 1 seq
prokMSA_id:4497 D30769 Acidiphilium sp. str. C-1
2.28.1.2.5.17170 OTU 1 seq
prokMSA_id:53994 AJ292597 WD238 clone WD238
2.28.1.2.5.17221 OTU 1 seq
prokMSA_id:39575 AF376021 Acidocella sp. NO-12 
2.28.1.2.5.21913 OTU 1 seq
prokMSA_id:70861 AF531477 Acidocella sp. IS10 
2.28.1.2.5.26435 OTU 6 seqs
prokMSA_id:4480 D30772 Acidiphilium angustum ATCC 35903
prokMSA_id:4484 D30776 Acidiphilium rubrum ATCC 35905
prokMSA_id:4485 AF047643 clone TRB25
prokMSA_id:4486 D86508 Acidiphilium sp. str. St1-5
prokMSA_id:4487 D86509 Acidiphilium sp. str. St1-7
prokMSA_id:51452 AF376022 Acidiphilium sp. NO-13 
2.28.1.2.5.29207 OTU 2 seqs
prokMSA_id:22545 AF253413 Acidocella sp. LGS-3 
prokMSA_id:50531 AF253412 Acidocella sp. WJB-3 
2.28.1.2.5.29860 OTU 2 seqs
prokMSA_id:4474 D30774 Acidocella facilis str. PW2 ATCC 35904
prokMSA_id:45483 D86510 Acidocella sp
2.28.1.2.5.31559 OTU 2 seqs
prokMSA_id:40217 AF376026 Acidiphilium sp. NO-17 
prokMSA_id:63339 AF523873 clone RCP1-25 
2.28.1.2.5.3208 OTU 1 seq
prokMSA_id:43037 AJ292598 WD248 clone WD248
2.28.1.2.5.32454 OTU 13 seqs
prokMSA_id:4476 X75265 Acidiphilium cryptum str. B-Het4
prokMSA_id:4477 D30775 Acidiphilium organovorum ATCC 43141
prokMSA_id:4490 X86771 clone cOS6
prokMSA_id:4493 AB006711 Acidiphilium multivorum AIU 301
prokMSA_id:4495 AB006712 Acidiphilium multivorum AIU 303
prokMSA_id:4496 AB023643 Acidiphilium MBIC4287 str. MBIC4287
prokMSA_id:4502 D30773 Acidiphilium cryptum ATCC 33463
prokMSA_id:4503 Y18446 Acidiphilium cryptum str. Kuesel IFV
prokMSA_id:4505 X91796 Acidiphilium sp. str. GS18h
prokMSA_id:28295 AF376023 Acidiphilium sp. NO-14 
prokMSA_id:47077 AY040740 Acidiphilium sp. SJH 
prokMSA_id:63337 AF523874 clone RCP1-78 
prokMSA_id:72048 AF352794 Acidiphilium sp. MPH3 
2.28.1.4 AZOSPIRILLUM_GROUP 131 seqs
2.28.1.4.1 R.RUBRUM_SUBGROUP 23 seqs
2.28.1.4.1.10001 OTU 1 seq
prokMSA_id:20957 AF143820 clone 4-Org1-12 
2.28.1.4.1.146 OTU 1 seq
prokMSA_id:55857 AJ298879 Roseospira marina strain CE2105
2.28.1.4.1.15291 OTU 1 seq
prokMSA_id:4509 X99671 Rhodospira trueperi
2.28.1.4.1.15315 OTU 1 seq
prokMSA_id:4516 D30777 Rhodospirillum photometricum str. E-11
2.28.1.4.1.15585 OTU 1 seq
prokMSA_id:68790 AF487434 Rhodospirillum photometricum 
2.28.1.4.1.16810 OTU 1 seq
prokMSA_id:78030 AJ298880 Roseospira navarrense strain navarrense
2.28.1.4.1.18875 OTU 1 seq
prokMSA_id:56046 AB074521 Aquaspirillum peregrinum subsp. integrum 
2.28.1.4.1.20071 OTU 1 seq
prokMSA_id:77884 AJ401208 Roseospira sp. AT2115 
2.28.1.4.1.21431 OTU 1 seq
prokMSA_id:79281 AY186195 alpha clone P_wp0211 
2.28.1.4.1.281 OTU 1 seq
prokMSA_id:78776 AJ536878 clone JG30-KF-AS50
2.28.1.4.1.30772 OTU 2 seqs
prokMSA_id:4508 D30778 Rhodospirillum rubrum str. ATH 1.1.1; S.1 ATCC 11170
prokMSA_id:4511 X87278 Rhodospirillum rubrum
2.28.1.4.1.33422 OTU 4 seqs
prokMSA_id:4514 AB024595 str. MBIC1474
prokMSA_id:27957 AF359545 Marine SCRIPPS_94 
prokMSA_id:35557 AF358664 Thalassospira lucentensis 
prokMSA_id:43487 AJ294358 alphaproteobacterium 4alphavs17 strain alphavs17
2.28.1.4.1.42065 OTU 3 seqs
prokMSA_id:79518 AF505720 Alpha UMB1A 
prokMSA_id:80090 AY189744 Marine B-4 
prokMSA_id:80223 AY189753 Marine M-5 
2.28.1.4.1.42754 OTU 2 seqs
prokMSA_id:18725 AF143827 clone 4-Org1-59 
prokMSA_id:25696 AF143826 clone 4-Org1-58 
2.28.1.4.1.4987 OTU 1 seq
prokMSA_id:43239 AF411851 Azospirillum sp. 5C variant 1 
2.28.1.4.1.6725 OTU 1 seq
prokMSA_id:66304 AB074520 Aquaspirillum itersonii subsp. nipponicum 
2.28.1.4.2 MAG.GRYPHISWALDENSE_SUBGROUP 24 seqs
2.28.1.4.2.11413 OTU 1 seq
prokMSA_id:37406 AJ292593 WD229 clone WD229
2.28.1.4.2.15348 OTU 1 seq
prokMSA_id:4529 AF170352 Dechlorospirillum WD str. WD
2.28.1.4.2.15391 OTU 1 seq
prokMSA_id:4539 AF104473 unnamed organism
2.28.1.4.2.15376 OTU 1 seq
prokMSA_id:4532 Y10109 Magnetospirillum gryphiswaldense str. MSR-1 DSM 6361
2.28.1.4.2.15381 OTU 1 seq
prokMSA_id:4535 D14433 Phaeospirillum fulvum str. 1360 NCIMB 11762
2.28.1.4.2.16192 OTU 1 seq
prokMSA_id:77302 AF524861 K-5b5 
2.28.1.4.2.18975 OTU 1 seq
prokMSA_id:78316 AY171615 Dechlorospirillum sp. SN1 
2.28.1.4.2.20329 OTU 1 seq
prokMSA_id:33368 AJ295561 rape rhizosphere wr0200 
2.28.1.4.2.21386 OTU 1 seq
prokMSA_id:62963 AF527587 clone LPB60 
2.28.1.4.2.21551 OTU 1 seq
prokMSA_id:47933 AF445724 alpha clone SM2D12 
2.28.1.4.2.30862 OTU 2 seqs
prokMSA_id:4530 Y17389 Magnetospirillum sp. str. MSM-3
prokMSA_id:4531 Y17390 Magnetospirillum sp. str. MSM-4
2.28.1.4.2.31769 OTU 5 seqs
prokMSA_id:4522 Y17391 Magnetospirillum sp. str. MSM-6
prokMSA_id:4524 Y10110 Magnetospirillum magnetotacticum DSM 3856
prokMSA_id:4525 D17514 Magnetospirillum sp. str. AMB-1
prokMSA_id:4526 D17515 Magnetospirillum sp. str. MGT-1
prokMSA_id:35227 AB033746 Phenol-degrading denitrifying spirillum CC-26 
2.28.1.4.2.34512 OTU 2 seqs
prokMSA_id:66169 AJ488096 clone IIIA-9
prokMSA_id:66183 AJ488082 clone IIA-1
2.28.1.4.2.35370 OTU 2 seqs
prokMSA_id:44956 AJ295468 rape rhizosphere wr0007 
prokMSA_id:75071 AJ519623 alpha clone Sh765B-TzT-31
2.28.1.4.2.3581 OTU 1 seq
prokMSA_id:35285 AF422687 clone d163 
2.28.1.4.2.42856 OTU 2 seqs
prokMSA_id:77417 AF524854 26-4b1 
prokMSA_id:77512 AF524863 26-4b1 
2.28.1.4.4 AZS.LIPOFERUM_SUBGROUP 84 seqs
2.28.1.4.4.13004 OTU 1 seq
prokMSA_id:59903 AY133099 alpha clone ccspost211 
2.28.1.4.4.13328 OTU 1 seq
prokMSA_id:30490 AJ292608 WD2103 clone WD2103
2.28.1.4.4.13409 OTU 1 seq
prokMSA_id:23291 AF085496 Alpha strain 15158 
2.28.1.4.4.14425 OTU 1 seq
prokMSA_id:60700 AF533506 alpha clone ASL45 
2.28.1.4.4.14797 OTU 1 seq
prokMSA_id:75835 AY150050 Roseomonas genomospecies 6 strain ATCC 49961 
2.28.1.4.4.151 OTU 1 seq
prokMSA_id:78724 AJ536857 alpha clone JG30-KF-C3
2.28.1.4.4.15433 OTU 1 seq
prokMSA_id:4552 X79728 Azospirillum sp. str. 137/5
2.28.1.4.4.15414 OTU 1 seq
prokMSA_id:4547 Z29616 Azospirillum amazonense str. Y-1 DSM 2787
2.28.1.4.4.15411 OTU 1 seq
prokMSA_id:4546 X92464 Azospirillum sp. str. ASP-1
2.28.1.4.4.15409 OTU 1 seq
prokMSA_id:4545 Z29583 Azospirillum irakense str. KBC1
2.28.1.4.4.15432 OTU 1 seq
prokMSA_id:4551 AF069496 Trojanella thessalonices str. L13
2.28.1.4.4.15493 OTU 1 seq
prokMSA_id:4574 U70683 clone OM75
2.28.1.4.4.15524 OTU 1 seq
prokMSA_id:4586 AF170353 Azospirillum TTI str. TTI
2.28.1.4.4.15636 OTU 1 seq
prokMSA_id:24244 AF132137 Endosymbiont of Acanthamoeba sp. UWC9 
2.28.1.4.4.15798 OTU 1 seq
prokMSA_id:76633 AJ519652 alpha clone GuBH2-AD-23
2.28.1.4.4.18296 OTU 1 seq
prokMSA_id:78233 AB089089 alpha clone:Rs-D39
2.28.1.4.4.18370 OTU 1 seq
prokMSA_id:78262 AB089099 alpha clone:Rs-E51
2.28.1.4.4.18618 OTU 1 seq
prokMSA_id:77697 AB089083 alpha clone:Rs-B07
2.28.1.4.4.1865 OTU 1 seq
prokMSA_id:42220 AB049111 Azospirillum sp. B510 
2.28.1.4.4.18850 OTU 1 seq
prokMSA_id:56033 AF523879 clone RCP2-92 
2.28.1.4.4.19056 OTU 1 seq
prokMSA_id:55487 AF523951 clone FW51 
2.28.1.4.4.19541 OTU 1 seq
prokMSA_id:63342 AY118222 Azospirillum sp. Mat2-1a 
2.28.1.4.4.19542 OTU 1 seq
prokMSA_id:63343 AY118223 Azospirillum sp. DA6-2-2 
2.28.1.4.4.2013 OTU 1 seq
prokMSA_id:34409 AJ244796 Alpha SOGA19 
2.28.1.4.4.21284 OTU 1 seq
prokMSA_id:32841 AF179678 Defluvicoccus vanus 
2.28.1.4.4.21340 OTU 1 seq
prokMSA_id:25641 AF234730 sludge A3 
2.28.1.4.4.289 OTU 1 seq
prokMSA_id:42010 AF411852 Azospirillum sp. 7C 
2.28.1.4.4.30974 OTU 3 seqs
prokMSA_id:4584 AF001637 clone OCS24
prokMSA_id:4585 U70678 clone OM25
prokMSA_id:68995 AF268236 EBAC37G09 ; tRNA-Ile complete ; and 23S 
2.28.1.4.4.31997 OTU 2 seqs
prokMSA_id:4549 Z29623 Azospirillum sp. str. 4 AZ DSM 4834
prokMSA_id:4555 Z29637 Azospirillum sp. str. 5 AZ DSM 4835
2.28.1.4.4.32650 OTU 3 seqs
prokMSA_id:4583 AF001636 clone OCS28
prokMSA_id:68978 AY033319 alpha MB13G10 ; tRNA-Ile complete ; and 23S 
prokMSA_id:68980 AY033316 alpha MB12F11 ; tRNA-Ile complete ; and 23S 
2.28.1.4.4.33012 OTU 2 seqs
prokMSA_id:4573 U70679 clone OM38
prokMSA_id:17396 AF353233 alpha clone Arctic96A-18 
2.28.1.4.4.33017 OTU 3 seqs
prokMSA_id:4575 D45202 str. HD-1
prokMSA_id:46623 AF422655 clone d064 
prokMSA_id:79172 AY187896 clone I13 
2.28.1.4.4.34415 OTU 24 seqs
prokMSA_id:16678 AB054177 alpha HOC43 
prokMSA_id:17000 AB054182 alpha HOC48 
prokMSA_id:20547 AB054176 alpha HOC42 
prokMSA_id:21146 AB054138 alpha HOC4 
prokMSA_id:22043 AB054178 alpha HOC44 
prokMSA_id:22342 AB054140 alpha HOC6 
prokMSA_id:23317 AB054158 alpha HOC24 
prokMSA_id:24176 AB054166 alpha HOC32 
prokMSA_id:24637 AB054142 alpha HOC8 
prokMSA_id:26396 AB054151 alpha HOC17 
prokMSA_id:26958 AB054160 alpha HOC26 
prokMSA_id:31227 AB054141 alpha HOC7 
prokMSA_id:34613 AB054144 alpha HOC10 
prokMSA_id:36320 AB054179 alpha HOC45 
prokMSA_id:36723 AB054147 alpha HOC13 
prokMSA_id:40299 AB054152 alpha HOC18 
prokMSA_id:40336 AB054150 alpha HOC16 
prokMSA_id:41079 AB054153 alpha HOC19 
prokMSA_id:43501 AB054148 alpha HOC14 
prokMSA_id:45239 AB054164 alpha HOC30 
prokMSA_id:45712 AB054169 alpha HOC35 
prokMSA_id:49588 AB054135 alpha HOC1 
prokMSA_id:49607 AB054145 alpha HOC11 
prokMSA_id:51928 AB054143 alpha HOC9 
2.28.1.4.4.3466 OTU 1 seq
prokMSA_id:72555 AJ240913 alpha CHAB-III-8 5' 
2.28.1.4.4.40575 OTU 3 seqs
prokMSA_id:69358 AF523824 Rhodocista pekingense 
prokMSA_id:77815 AJ401204 Rhodocista sp. AT2107 
prokMSA_id:78339 AJ401217 Rhodocista sp. AR2107 
2.28.1.4.4.41207 OTU 2 seqs
prokMSA_id:75429 AJ534613 alpha clone JG36-TzT-23
prokMSA_id:76590 AJ518766 alpha clone JG37-AG-20
2.28.1.4.4.41323 OTU 3 seqs
prokMSA_id:4571 Z29619 Azospirillum lipoferum str. VPI Sp 59b NCIMB 11861
prokMSA_id:63341 AY118224 Azospirillum sp. DA2-3-1 
prokMSA_id:72782 AB049112 Azospirillum sp. B518 
2.28.1.4.4.42322 OTU 2 seqs
prokMSA_id:60467 AF533354 Roseomonas fauriae 
prokMSA_id:77160 AY150046 Roseomonas fauriae strain ATCC 49958 
2.28.1.4.4.42675 OTU 2 seqs
prokMSA_id:68981 AY033313 alpha MB12C06 ; tRNA-Ile complete ; and 23S 
prokMSA_id:68991 AY033300 alpha MB11B10 ; tRNA-Ile complete ; and 23S 
2.28.1.4.4.4423 OTU 1 seq
prokMSA_id:41918 AB049109 Azospirillum sp. B52 
2.28.1.4.4.582 OTU 1 seq
prokMSA_id:33613 AF465655 alpha YNPRH85B 
2.28.1.4.4.5939 OTU 1 seq
prokMSA_id:66229 AF508113 Phaeospirillum fulvum isolate S3 
2.28.1.4.4.8123 OTU 1 seq
prokMSA_id:74301 AF533509 alpha clone ASL6 
2.28.1.4.4.9367 OTU 1 seq
prokMSA_id:50973 AF293000 Green Bay ferromanganous micronodule MNG3 
2.28.1.4.4.9565 OTU 1 seq
prokMSA_id:58862 AF426002 UNSW7 
2.28.1.4.4.9849 OTU 1 seq
prokMSA_id:45099 AJ318202 alpha clone BIxi22
2.28.1.5 OSP.PUSILLUM_GROUP 1 seq
2.28.1.5.15543 OTU 1 seq
prokMSA_id:4594 AB006768 Oceanospirillum pusillum IFO 13613
2.28.1.6 RHIZOBIUM-AGROBACTERIUM_GROUP 1003 seqs
2.28.1.6.1 STA.STELLULATA_SUBGROUP 19 seqs
2.28.1.6.1.11907 OTU 1 seq
prokMSA_id:60397 AF513441 Alpha LA33B 
2.28.1.6.1.20253 OTU 1 seq
prokMSA_id:70630 AY007682 Unknown marine alpha JP22.1 
2.28.1.6.1.29078 OTU 4 seqs
prokMSA_id:26810 AF227158 Achromobacter sp. LMG5410 
prokMSA_id:70672 AF227159 Achromobacter sp. LMG5431 
prokMSA_id:72136 AF227160 Achromobacter sp. LMG5430 
prokMSA_id:74042 AF227157 Achromobacter sp. LMG5411 
2.28.1.6.1.33104 OTU 3 seqs
prokMSA_id:4598 D88525 Stappia stellulata IAM 12621
prokMSA_id:4603 AJ000646 str. PTB-5
prokMSA_id:4605 Y10913 unnamed organism -- macronuclear
2.28.1.6.1.34238 OTU 7 seqs
prokMSA_id:4599 AB025419 str. MBIC3993
prokMSA_id:4604 D88520 Agrobacterium stellulatum IAM 12614
prokMSA_id:4606 Y10914 unnamed organism -- macronuclear
prokMSA_id:4607 Y10915 unnamed organism -- macronuclear
prokMSA_id:4610 AB023435 str. MBIC1535
prokMSA_id:42788 AF246615 Crassostrea virginica symbiont CV902-700 
prokMSA_id:82237 AY217769 Agrobacterium sp. SP25 
2.28.1.6.1.34962 OTU 3 seqs
prokMSA_id:4601 AB012864 str. MBIC3368
prokMSA_id:27269 AF295099 Alpha NW001 
prokMSA_id:36381 AF218241 Alpha MBIC3368 
2.28.1.6.2 HYP.DENITRIFICANS_SUBGROUP 22 seqs
2.28.1.6.2.11117 OTU 1 seq
prokMSA_id:28949 AF097806 clone 49512 
2.28.1.6.2.12473 OTU 1 seq
prokMSA_id:46020 AF236002 Alpha A0839 
2.28.1.6.2.13332 OTU 1 seq
prokMSA_id:23276 AF292998 Green Bay ferromanganous micronodule MNH2 
2.28.1.6.2.15893 OTU 1 seq
prokMSA_id:4616 AB015245 str. JTB131
2.28.1.6.2.15917 OTU 1 seq
prokMSA_id:4624 AF097824 clone 4953 
2.28.1.6.2.15926 OTU 1 seq
prokMSA_id:4627 Y14307 Hyphomicrobium methylovorum str. KM-146 DSM 5458
2.28.1.6.2.17718 OTU 1 seq
prokMSA_id:47454 AF198623 Hyphomicrobium sp. CM2 
2.28.1.6.2.2994 OTU 1 seq
prokMSA_id:26724 AF358017 clone LO13.3 
2.28.1.6.2.32093 OTU 5 seqs
prokMSA_id:4611 X97692 Pedomicrobium americanum ACM 3090
prokMSA_id:4612 X97693 Pedomicrobium australicum IFAM ST-1306
prokMSA_id:4614 X97694 Pedomicrobium australicum IFAM WD1355
prokMSA_id:4615 X97695 Pedomicrobium sp. ACM 3067
prokMSA_id:4618 X97690 Pedomicrobium ferrugineum ACM 3037
2.28.1.6.2.34110 OTU 8 seqs
prokMSA_id:4620 AF098790 Hyphomicrobium M3 str. M3 ATCC 202122
prokMSA_id:4621 Y14311 Hyphomicrobium facile subsp. tolerans IFAM I-551
prokMSA_id:4625 Y14310 Hyphomicrobium facile subsp. ureaphilum IFAM CO-582
prokMSA_id:4626 AB016812 Hyphomicrobium methylovorum str. MBIC3196
prokMSA_id:27497 AF312221 Pietermaritzburg Y17-2 
prokMSA_id:45287 AF156711 Hyphomicrobium sp. HM 
prokMSA_id:48462 AF279791 Hyphomicrobium sp. SAN-1 
prokMSA_id:68656 AY081988 clone KRA30-08 
2.28.1.6.2.664 OTU 1 seq
prokMSA_id:56510 AY102318 clone a13111 
2.28.1.6.3 HYP.ZAVARZINII_SUBGROUP 15 seqs
2.28.1.6.3.1309 OTU 1 seq
prokMSA_id:34344 X53182 Hyphomicrobium vulgare part
2.28.1.6.3.15966 OTU 1 seq
prokMSA_id:4638 Y14313 Pedomicrobium fusiforme DSM 5304
2.28.1.6.3.15987 OTU 1 seq
prokMSA_id:4640 AF097815 clone 49520 
2.28.1.6.3.15968 OTU 1 seq
prokMSA_id:4639 AF097786 clone 1951 
2.28.1.6.3.2442 OTU 1 seq
prokMSA_id:26693 AF279787 Hyphomicrobium sp. PMC 
2.28.1.6.3.35428 OTU 9 seqs
prokMSA_id:4630 Y14303 Hyphomicrobium hollandicum IFAM KB-677
prokMSA_id:4632 Y14305 Hyphomicrobium zavarzinii IFAM ZV-622
prokMSA_id:4633 U59505 Hyphomicrobium W1-1B str. W1-1B
prokMSA_id:4634 U59506 Hyphomicrobium zavarzinii ATCC 27495
prokMSA_id:4635 Y14304 Hyphomicrobium aestuarii DSM 1564
prokMSA_id:4636 Y14302 Hyphomicrobium vulgare str. MC-750 IFAM MC-750
prokMSA_id:4637 Y14306 Hyphomicrobium zavarzinii str. ZV-580
prokMSA_id:4641 U06473 str. US-353
prokMSA_id:34544 AF234724 sludge A39 
2.28.1.6.3.516 OTU 1 seq
prokMSA_id:41463 AF097800 clone 1956 
2.28.1.6.6 RM.VANNIELII_SUBGROUP 1 seq
2.28.1.6.6.7193 OTU 1 seq
prokMSA_id:51312 AF234739 sludge S43 
2.28.1.6.7 MPI.CAPSULATA 1 seq
2.28.1.6.7.15993 OTU 1 seq
prokMSA_id:4647 AF004844 Methylopila capsulata str. IM1 VKM B-1606
2.28.1.6.8 BL.VIRIDIS_ASSEMBLAGE 77 seqs
2.28.1.6.8.11265 OTU 1 seq
prokMSA_id:21706 AJ295650 KF-JG30-B3 
2.28.1.6.8.12044 OTU 1 seq
prokMSA_id:75443 AJ532709 alpha clone JG34-KF-416
2.28.1.6.8.12923 OTU 1 seq
prokMSA_id:74952 AJ534617 alpha clone JG36-TzT-166
2.28.1.6.8.138 OTU 1 seq
prokMSA_id:55851 AF502220 clone HP1B78 
2.28.1.6.8.14954 OTU 1 seq
prokMSA_id:75897 AJ532707 alpha clone JG34-KF-361
2.28.1.6.8.14963 OTU 1 seq
prokMSA_id:68682 AJ306541 Xanthobacter sp. INA43/2-2 strain INA43/2-2
2.28.1.6.8.15265 OTU 1 seq
prokMSA_id:76546 AJ518779 alpha clone JG37-AG-130
2.28.1.6.8.1530 OTU 1 seq
prokMSA_id:63879 AB087717 Rhodoplanes sp. HA17 complete 
2.28.1.6.8.15350 OTU 1 seq
prokMSA_id:76573 AJ534618 alpha clone JG36-TzT-182
2.28.1.6.8.16036 OTU 1 seq
prokMSA_id:4663 X94198 Xanthobacter agilis str. SA35
2.28.1.6.8.16035 OTU 1 seq
prokMSA_id:4661 D32247 Thiobacillus novellus IAM 12100
2.28.1.6.8.16472 OTU 1 seq
prokMSA_id:4714 AF050531 clone WCHB1-55
2.28.1.6.8.16456 OTU 1 seq
prokMSA_id:4709 U70713 clone OM27
2.28.1.6.8.16476 OTU 1 seq
prokMSA_id:4718 AF077729 Rhodoplanes Tok2tar1 str. Tok2tar1
2.28.1.6.8.16494 OTU 1 seq
prokMSA_id:4722 AF004845 Methylorhabdus multivorans str. DM13 VKM B-2030
2.28.1.6.8.16493 OTU 1 seq
prokMSA_id:4721 Y12598 clone DA122
2.28.1.6.8.17013 OTU 1 seq
prokMSA_id:5402 AF097819 clone 49524 
2.28.1.6.8.17164 OTU 1 seq
prokMSA_id:39556 AJ296548 GR-WP33-3 clone GR-WP33-3
2.28.1.6.8.17356 OTU 1 seq
prokMSA_id:32314 AJ294349 Chelatococcus asaccharovorans strain TE2
2.28.1.6.8.18893 OTU 1 seq
prokMSA_id:63277 AF523945 clone FW96 
2.28.1.6.8.19527 OTU 1 seq
prokMSA_id:63338 AF523872 clone RCP1-19 
2.28.1.6.8.21118 OTU 1 seq
prokMSA_id:34088 AJ295558 rape rhizosphere wr0197 
2.28.1.6.8.21869 OTU 1 seq
prokMSA_id:64286 AY040361 Alpha LMG 20591 
2.28.1.6.8.26593 OTU 2 seqs
prokMSA_id:35018 AF288301 Alpha 34619 
prokMSA_id:36327 AF236000 Alpha F0723 
2.28.1.6.8.2909 OTU 1 seq
prokMSA_id:58086 AF498744 Ellin362 
2.28.1.6.8.3064 OTU 1 seq
prokMSA_id:49637 AF235999 Alpha A0838 
2.28.1.6.8.31135 OTU 2 seqs
prokMSA_id:4719 AF077730 Rhodoplanes Wai3R3 str. Wai3R3
prokMSA_id:70971 D25311 Rhodoplanes elegans 
2.28.1.6.8.32299 OTU 3 seqs
prokMSA_id:4655 U62887 Xanthobacter autotrophicus str. T101
prokMSA_id:4656 U62888 Xanthobacter autotrophicus str. T102
prokMSA_id:62748 AF399970 Xanthobacter viscosus 
2.28.1.6.8.34568 OTU 2 seqs
prokMSA_id:70100 AY145551 Alpha AP-12 
prokMSA_id:71647 AY145553 Alpha AP-16 
2.28.1.6.8.35072 OTU 21 seqs
prokMSA_id:4664 D25314 Blastochloris viridis ATCC 19567
prokMSA_id:4665 AF084501 Blastochloris viridis str. G7
prokMSA_id:4666 AF084502 Blastochloris viridis str. G8
prokMSA_id:4667 AF084503 Blastochloris viridis str. G10
prokMSA_id:4668 AF084506 Blastochloris viridis str. B4
prokMSA_id:4669 AF084508 Blastochloris viridis str. B7
prokMSA_id:4687 D25314 Blastochloris viridis ATCC 19567
prokMSA_id:4688 AF084495 Blastochloris viridis DSM 133
prokMSA_id:4689 AF084496 Blastochloris viridis str. UN
prokMSA_id:4690 AF084497 Blastochloris viridis str. G2
prokMSA_id:4691 AF084498 Blastochloris viridis str. G3
prokMSA_id:4692 AF084499 Blastochloris viridis str. G5
prokMSA_id:4693 AF084500 Blastochloris viridis str. G6
prokMSA_id:4694 AF084504 Blastochloris viridis str. G11
prokMSA_id:4695 AF084505 Blastochloris viridis str. G12
prokMSA_id:4696 AF084507 Blastochloris viridis str. B5
prokMSA_id:4697 AF084509 Blastochloris viridis str. B9
prokMSA_id:4710 D86514 Blastochloris sulfoviridis DSM 729
prokMSA_id:4711 AJ012089 Blastochloris sulfoviridis str. ToP1
prokMSA_id:4712 AF084510 Blastochloris viridis str. GI
prokMSA_id:78031 AJ401203 Blastochloris sp. AT2101 
2.28.1.6.8.41122 OTU 6 seqs
prokMSA_id:4651 AJ224611 str. TA1-AE1
prokMSA_id:4652 AJ224612 str. TA12-21
prokMSA_id:4653 AJ224613 str. TA1-A1
prokMSA_id:17276 AY056830 Ancylobacter sp. AS1.1761 
prokMSA_id:81693 AY211516 Ancylobacter sp. DSM 2457 
prokMSA_id:82106 AY211514 Ancylobacter sp. DSM 1107 
2.28.1.6.8.41205 OTU 9 seqs
prokMSA_id:4671 X94199 Xanthobacter flavus str. 301
prokMSA_id:4672 AJ224614 str. TV6-2b
prokMSA_id:4673 X94202 Xanthobacter flavus str. H4-14
prokMSA_id:4674 X94204 Xanthobacter flavus str. JW/KR-1
prokMSA_id:4675 X94205 Xanthobacter flavus str. JW/KR-2
prokMSA_id:4676 X94206 Xanthobacter flavus str. JW/KR-E1
prokMSA_id:4702 AJ224616 str. Z4A-2
prokMSA_id:4704 X94200 Azorhizobium caulinodans str. MAR 1568 ORS 571
prokMSA_id:4708 D11342 Azorhizobium caulinodans str. MAR 1568 ORS 571
2.28.1.6.8.41715 OTU 2 seqs
prokMSA_id:65424 AF513098 clone 6 
prokMSA_id:65434 AF513085 clone 10A 
2.28.1.6.8.4496 OTU 1 seq
prokMSA_id:65463 AY102322 clone a13115 
2.28.1.6.8.4651 OTU 1 seq
prokMSA_id:64872 AJ412676 clone 92
2.28.1.6.8.4919 OTU 1 seq
prokMSA_id:43219 AF288311 Alpha 76712 
2.28.1.6.8.8173 OTU 1 seq
prokMSA_id:82197 AY078053 Corbulabacter subterraneus 
2.28.1.6.8.9702 OTU 1 seq
prokMSA_id:75138 AJ532703 alpha clone JG34-KF-211
2.28.1.6.9 MSI.TRICHOSPORIUM_SUBGROUP 60 seqs
2.28.1.6.9.12441 OTU 1 seq
prokMSA_id:30352 AJ229205 from anoxic bulk soil clone BSV53
2.28.1.6.9.16524 OTU 1 seq
prokMSA_id:4737 M95665 Methylosinus sporium str. provided by Y.Trotsenko
2.28.1.6.9.16521 OTU 1 seq
prokMSA_id:4735 M95664 Methylosinus sp. str. LAC
2.28.1.6.9.20430 OTU 1 seq
prokMSA_id:55601 AJ458479 Methylocystis sp. 42/22 strain 42/22
2.28.1.6.9.21191 OTU 1 seq
prokMSA_id:32800 AF314432 PHOS-HE47 
2.28.1.6.9.21167 OTU 1 seq
prokMSA_id:64196 AJ458509 Methylosinus sp. D15a strain D15a
2.28.1.6.9.21666 OTU 1 seq
prokMSA_id:64202 AJ458504 Methylocystis sp. F10V2a strain F10V2a
2.28.1.6.9.21742 OTU 1 seq
prokMSA_id:64234 AJ431385 Methylosinus trichosporium strain KS21
2.28.1.6.9.32603 OTU 11 seqs
prokMSA_id:4748 AF177299 str. AML-A6
prokMSA_id:4749 Y18442 str. LR1
prokMSA_id:28443 AJ414656 Methylocystis sp. SV97 strain SV97
prokMSA_id:36920 AF358021 clone LO13.7 
prokMSA_id:55280 AJ431384 Methylocystis sp. SC2 strain SC2
prokMSA_id:64198 AJ458507 Methylocystis sp. 82 strain 82
prokMSA_id:64203 AJ458502 Methylocystis echinoides strain 2
prokMSA_id:64218 AJ458484 Methylocystis sp. 50/42a strain 50/42a
prokMSA_id:64224 AJ458475 Methylocystis sp. 51 strain 51
prokMSA_id:64227 AJ458471 Methylocystis sp. IMET 10486 strain IMET 10486
prokMSA_id:64230 AJ458467 Methylocystis sp. 495/4 strain 495/4
2.28.1.6.9.41494 OTU 20 seqs
prokMSA_id:4736 L20845 str. B-3060
prokMSA_id:4739 AF150804 Methylosinus trichosporium
prokMSA_id:4740 AF150802 Methylosinus PW1 str. PW1
prokMSA_id:4741 AF150790 Methylocystis LW5 str. LW5
prokMSA_id:4742 AF150788 Methylosinus LW3 str. LW3
prokMSA_id:32547 AF107461 Methylosinus pucelana 
prokMSA_id:42706 Y18946 Methylosinus sporium 
prokMSA_id:44508 Y18947 Methylosinus trichosporium 
prokMSA_id:52070 AY007293 Methylosinus sp. LW4 
prokMSA_id:56187 AJ458490 Methylocystis sp. H9a strain H9a
prokMSA_id:58407 AB007842 Alpha methylotroph Hohenstaufen 
prokMSA_id:58408 AB007841 Methylocystis sp. 18-2 
prokMSA_id:64200 AJ458505 Methylocystis sp. KS31 strain KS31
prokMSA_id:64206 AJ458498 Methylocystis sp. KS7 strain KS7
prokMSA_id:64207 AJ458497 Methylocystis sp. KS3 strain KS3
prokMSA_id:64208 AJ458496 Methylosinus trichosporium strain KS24b
prokMSA_id:64209 AJ458494 Methylocystis sp. KS12 strain KS12
prokMSA_id:64210 AJ458493 Methylocystis sp. KS8a strain KS8a
prokMSA_id:64217 AJ458483 Methylocystis sp. Pi5/4 strain Pi5/4
prokMSA_id:70519 AJ458487 Methylocystis sp. Ch22 strain Ch22
2.28.1.6.9.41720 OTU 6 seqs
prokMSA_id:4747 AF177298 str. AML-A3
prokMSA_id:55990 AY007196 Methylocystis sp. WRS complete 
prokMSA_id:56124 AJ458499 Methylocystis sp. M42/1 strain M42/1
prokMSA_id:64199 AJ458506 Methylocystis sp. KS33 strain KS33
prokMSA_id:64201 AJ458503 Methylocystis sp. M31 strain M31
prokMSA_id:64204 AJ458501 Methylocystis sp. 39 strain 39
2.28.1.6.9.42585 OTU 3 seqs
prokMSA_id:61187 AY080911 clone UP4 
prokMSA_id:61188 AY080912 clone UP6 
prokMSA_id:61191 AY080917 clone UP5 
2.28.1.6.9.42575 OTU 2 seqs
prokMSA_id:4738 AF150805 Methylocystis parvus
prokMSA_id:35967 AY007294 Methylosinus sp. LW8 
2.28.1.6.9.42603 OTU 2 seqs
prokMSA_id:4752 M. U81595 Methylocystis M str
prokMSA_id:70162 AJ458469 Methylosinus sporium strain 9/1
2.28.1.6.9.42726 OTU 5 seqs
prokMSA_id:56666 AJ458482 Methylosinus trichosporium strain 1
prokMSA_id:58411 AB007840 Methylosinus sp. NCIMB 13214 
prokMSA_id:64211 AJ458491 Methylosinus trichosporium strain O19/1
prokMSA_id:64219 AJ458481 Methylosinus trichosporium strain 33/1
prokMSA_id:74224 AJ458485 Methylosinus trichosporium strain SC10
2.28.1.6.9.4504 OTU 1 seq
prokMSA_id:65465 AY102320 clone a13113 
2.28.1.6.9.5002 OTU 1 seq
prokMSA_id:20378 AF234728 sludge A20 
2.28.1.6.9.8205 OTU 1 seq
prokMSA_id:37026 AF423211 soil clone 1152-2 
2.28.1.6.10 BEI.INDICA_SUBGROUP 18 seqs
2.28.1.6.10.14553 OTU 1 seq
prokMSA_id:76418 AJ518775 alpha clone JG37-AG-107
2.28.1.6.10.15174 OTU 1 seq
prokMSA_id:76517 AJ532683 alpha clone Gitt-KF-194
2.28.1.6.10.16599 OTU 1 seq
prokMSA_id:4764 Y07582 clone DA067
2.28.1.6.10.16598 OTU 1 seq
prokMSA_id:4761 Y17144 unnamed organism
2.28.1.6.10.16600 OTU 1 seq
prokMSA_id:4765 X97077 str. TM19
2.28.1.6.10.16596 OTU 1 seq
prokMSA_id:4760 U87772 Afipia genosp. 6 str. G8665
2.28.1.6.10.17387 OTU 1 seq
prokMSA_id:32333 AF200697 alpha UP3 
2.28.1.6.10.21143 OTU 1 seq
prokMSA_id:64189 AJ491847 Methylocella sp. BL2 
2.28.1.6.10.3427 OTU 1 seq
prokMSA_id:58103 AF498722 Ellin340 
2.28.1.6.10.41789 OTU 2 seqs
prokMSA_id:24886 AF407383 clone RB7C4 
prokMSA_id:27469 AF407384 clone RB7C5 
2.28.1.6.10.42087 OTU 2 seqs
prokMSA_id:36961 AF200694 alpha UP1 
prokMSA_id:61190 AY080913 clone UP8 
2.28.1.6.10.5722 OTU 1 seq
prokMSA_id:51161 AF234713 sludge A28b 
2.28.1.6.10.6554 OTU 1 seq
prokMSA_id:19989 AJ289986 FukuS110 
2.28.1.6.10.6614 OTU 1 seq
prokMSA_id:51286 AF200695 alpha UP2 
2.28.1.6.10.6733 OTU 1 seq
prokMSA_id:80741 AY192274 alpha clone W2b-8B 
2.28.1.6.10.915 OTU 1 seq
prokMSA_id:78811 AJ536868 alpha clone JG30a-KF-59
2.28.1.6.11 METHYLOBACTERIA_SUBGROUP 65 seqs
2.28.1.6.11.1 MLB.EXTORQUENS_SUBGROUP 16 seqs
2.28.1.6.11.1.10407 OTU 1 seq
prokMSA_id:52319 AF198624 Methylobacterium sp. CM4 
2.28.1.6.11.1.12469 OTU 1 seq
prokMSA_id:76105 AJ519622 alpha clone Sh765B-TzT-3
2.28.1.6.11.1.16614 OTU 1 seq
prokMSA_id:4772 X74139 unnamed organism
2.28.1.6.11.1.33695 OTU 13 seqs
prokMSA_id:4776 D32230 Methylobacterium zatmanii str. MA1/5 JCM 2819
prokMSA_id:4781 M95655 Methylobacterium sp. str. PR-6 S.Hirano
prokMSA_id:4782 D32224 Methylobacterium extorquens JCM 2802
prokMSA_id:4783 D25305 Methylobacterium sp. str. GK101
prokMSA_id:4785 M95654 Methylobacterium sp. str. PK-1 S.Hirano
prokMSA_id:4786 D32228 Methylobacterium rhodesianum JCM 2810
prokMSA_id:4787 D25306 Methylobacterium sp. str. GK118
prokMSA_id:4788 U58018 Methylobacterium APW
prokMSA_id:32399 AF395034 Methylobacterium sp. G296-15 
prokMSA_id:42869 AF395030 Methylobacterium sp. TD4 
prokMSA_id:43152 AF267912 Methylobacterium extorquens 
prokMSA_id:55455 AF531770 Methylobacterium extorquens 
prokMSA_id:68822 AF293375 Methylobacterium extorquens ; tRNA-Ile and tRNA-Ala genes co
2.28.1.6.11.2 MLB.RADIOTOLERANS_SUBGROUP 29 seqs
2.28.1.6.11.2.11904 OTU 1 seq
prokMSA_id:60394 AF513446 Rhizobiaceae LA52 
2.28.1.6.11.2.13659 OTU 1 seq
prokMSA_id:68458 AF459799 Symbiont cf. Methylobacterium of Acromyrmex octospinosus 
2.28.1.6.11.2.16654 OTU 1 seq
prokMSA_id:4791 Z23156 Blastobacter sp. str. BF10
2.28.1.6.11.2.16659 OTU 1 seq
prokMSA_id:4797 Z23159 Blastobacter sp. str. PC30.44
2.28.1.6.11.2.16656 OTU 1 seq
prokMSA_id:4794 AB015566 str. BD5-10
2.28.1.6.11.2.17143 OTU 1 seq
prokMSA_id:4803 AB013079 str. MBIC3401
2.28.1.6.11.2.17738 OTU 1 seq
prokMSA_id:77549 AY167835 Methylobacterium sp. SAFR-026 
2.28.1.6.11.2.18375 OTU 1 seq
prokMSA_id:77609 AB074616 alpha clone:APe2_3
2.28.1.6.11.2.1911 OTU 1 seq
prokMSA_id:72323 AJ276806 Methylobacterium sp. strain LMG-19419
2.28.1.6.11.2.19940 OTU 1 seq
prokMSA_id:77836 AB089094 alpha clone:Rs-A44
2.28.1.6.11.2.32619 OTU 2 seqs
prokMSA_id:4793 AJ223453 str. 6c
prokMSA_id:37847 AF324201 Methylobacterium sp. V3 
2.28.1.6.11.2.39551 OTU 11 seqs
prokMSA_id:4790 D32233 Methylobacterium sp. str. F18
prokMSA_id:4795 D32232 Methylobacterium sp. str. F15
prokMSA_id:4796 D32235 Methylobacterium sp. str. F42
prokMSA_id:4798 D32231 Methylobacterium sp. str. F05
prokMSA_id:4800 D32227 Methylobacterium radiotolerans JCM 2831
prokMSA_id:4801 D32237 Methylobacterium sp. str. F73
prokMSA_id:4806 D32225 Methylobacterium mesophilicum JCM 2829
prokMSA_id:20530 AJ416978 Methylobacterium sp. A1 
prokMSA_id:26317 AJ400919 Methylobacterium mesophilicum strain JCM 2829
prokMSA_id:29815 AF395035 Methylobacterium sp. G296-5 
prokMSA_id:35133 AJ292612 WD2113 clone WD2113
2.28.1.6.11.2.42583 OTU 2 seqs
prokMSA_id:58322 AY140237 Iron-oxidizing acidophile Y005 
prokMSA_id:81189 AY169421 Methylobacterium fujisawaense 
2.28.1.6.11.2.42560 OTU 3 seqs
prokMSA_id:4789 Z23158 Blastobacter sp. str. PC30.39
prokMSA_id:4799 AJ250801 Methylobacterium fujisawaense DSM 5686
prokMSA_id:4804 Z23160 Blastobacter sp. str. BF15
2.28.1.6.11.2.4690 OTU 1 seq
prokMSA_id:49806 AF220762 Methylobacterium nodulans strain ORS1924 
2.28.1.6.11.3 MLB.ORGANOPHILUM_SUBGROUP 2 seqs
2.28.1.6.11.3.17147 OTU 1 seq
prokMSA_id:4807 D32226 Methylobacterium organophilum str. XX JCM 2833
2.28.1.6.11.3.17149 OTU 1 seq
prokMSA_id:4808 AB024616 Methylobacterium MBIC4305 str. MBIC4305
2.28.1.6.11.4 BO.THIOOXIDANS_SUBGROUP 18 seqs
2.28.1.6.11.4.17178 OTU 1 seq
prokMSA_id:4819 AJ009451 clone SJA-9
2.28.1.6.11.4.194 OTU 1 seq
prokMSA_id:48650 AF273081 Bosea mexicana 
2.28.1.6.11.4.34283 OTU 16 seqs
prokMSA_id:4814 U87776 Afipia genosp. 9 str. G8995
prokMSA_id:4816 U87778 Afipia genosp. 9 str. G8998
prokMSA_id:4817 U87779 Afipia genosp. 9 str. G8990
prokMSA_id:4820 AJ009482 clone SJA-105
prokMSA_id:4821 AJ224610 str. 5Z2111
prokMSA_id:4826 AJ250800 Bosea thiooxidans str. KB13-VS
prokMSA_id:24179 AF288306 Alpha 34635 
prokMSA_id:25399 AF288302 Alpha 34620 
prokMSA_id:27298 AF288307 Alpha 34649 
prokMSA_id:29196 AF288300 Alpha 34614 
prokMSA_id:47211 AF288309 Alpha 63287 
prokMSA_id:47963 AF288308 Alpha 63286 
prokMSA_id:56322 AF508803 Bosea thiooxidans strain BI-42 
prokMSA_id:61828 AF529334 alpha clone CLi38 
prokMSA_id:68725 AF479379 Glacial ice M3C1.8K-TD7 
prokMSA_id:69677 AF531764 Bosea sp. 7F 
2.28.1.6.12 BRADYRHIZOBIUM_SUBGROUP 201 seqs
2.28.1.6.12.2 AFP.CLEVELANDENSIS 1 seq
2.28.1.6.12.2.17225 OTU 1 seq
prokMSA_id:4832 M69186 Afipia clevelandensis
2.28.1.6.12.4 NTB.WINOGRADSKYI_SUBGROUP 2 seqs
2.28.1.6.12.4.12304 OTU 1 seq
prokMSA_id:29702 AY055794 Nitrobacter sp. KB215 
2.28.1.6.12.4.643 OTU 1 seq
prokMSA_id:56503 AY055798 Nitrobacter sp. KB212 
2.28.1.6.12.5 RPS.PALUSTRIS_SUBGROUP 2 seqs
2.28.1.6.12.5.15576 OTU 1 seq
prokMSA_id:68785 AF487431 Rhodopseudomonas palustris strain Wai1val1 
2.28.1.6.12.5.19809 OTU 1 seq
prokMSA_id:47708 AJ318194 alpha clone BIvi26
2.28.1.6.12.6 ENVIRONMENTAL_CLONE_JAP850_SUBGROUP 1 seq
2.28.1.6.12.6.17322 OTU 1 seq
prokMSA_id:4878 U09829 clone JAP850
2.28.1.6.12.8 BDR.LUPINI_SUBGROUP 9 seqs
2.28.1.6.12.8.15550 OTU 1 seq
prokMSA_id:32002 AF417544 Bradyrhizobium japonicum strain DASA12007 
2.28.1.6.12.8.16858 OTU 1 seq
prokMSA_id:24441 AJ318107 alpha clone BIaii16
2.28.1.6.12.8.17966 OTU 1 seq
prokMSA_id:39678 AF288303 Alpha 34626 
2.28.1.6.12.8.21451 OTU 1 seq
prokMSA_id:62985 AF526923 Bradyrhizobium sp. clone T8-12 rrn 
2.28.1.6.12.8.33343 OTU 5 seqs
prokMSA_id:4920 AF001638 clone OCS126
prokMSA_id:32937 AF245641 alpha NAC11-16 
prokMSA_id:41962 AJ400342 marine ZD0209 
prokMSA_id:68992 AY033298 alpha MB11B03 ; tRNA-Ile complete ; and 23S 
prokMSA_id:79431 AF382141 clone ZA3446c 
2.28.1.6.12.9 BDR.JAPONICUS_SUBGROUP 1 seq
2.28.1.6.12.9.15331 OTU 1 seq
prokMSA_id:45827 AF417551 Bradyrhizobium japonicum strain DASA37026 
2.28.1.6.12.10 BDR.ELKANII_SUBGROUP 9 seqs
2.28.1.6.12.10.12720 OTU 1 seq
prokMSA_id:45478 AF229858 Bradyrhizobium sp. 2FB3 
2.28.1.6.12.10.18003 OTU 1 seq
prokMSA_id:40221 AJ295483 rape rhizosphere wr0024 
2.28.1.6.12.10.19544 OTU 1 seq
prokMSA_id:56127 AF293376 Bradyrhizobium elkanii strain USDA 23 ; tRNA-Ile and tRNA-Al
2.28.1.6.12.10.41976 OTU 3 seqs
prokMSA_id:27689 AJ295470 rape rhizosphere wr0009 
prokMSA_id:41143 AJ295466 rape rhizosphere wr0005 
prokMSA_id:44842 AJ295462 rape rhizosphere wr0001 
2.28.1.6.12.10.42772 OTU 3 seqs
prokMSA_id:4963 U87763 Afipia genosp. 1 str. F872
prokMSA_id:4964 U87764 Afipia genosp. 2 str. G8965
prokMSA_id:4965 U87765 Afipia genosp. 2 str. G4438
2.28.1.6.12.12 BDR.LIAONINGENSIS_SUBGROUP 1 seq
2.28.1.6.12.12.668 OTU 1 seq
prokMSA_id:56515 AF208509 Bradyrhizobium japonicum strain USDA 129 ; tRNA-Ile and tRNA
2.28.1.6.12.14 BLB.DENITRIFICANS_SUBGROUP 3 seqs
2.28.1.6.12.14.14548 OTU 1 seq
prokMSA_id:5026 U87783 Afipia genosp. 12 str. G8997
2.28.1.6.12.14.14573 OTU 1 seq
prokMSA_id:5037 AJ133779 Bradyrhizobium sp. LMG 12187
2.28.1.6.12.14.8841 OTU 1 seq
prokMSA_id:82205 AY216437 clone HC65 
2.28.1.6.12.99 VARIOUS 172 seqs
2.28.1.6.12.99.39435 OTU 7 seqs
prokMSA_id:4831 AF003937 Afipia felis str. AfTA-1 CDC G9192
prokMSA_id:4930 Z94814 Bradyrhizobium genosp. E str. BDV5810
prokMSA_id:5004 Z94813 Bradyrhizobium genosp. D str. BDV5563
prokMSA_id:18562 AF288310 Afipia felis 
prokMSA_id:66818 AF374383 Alpha 76713 
prokMSA_id:68815 AF338177 Afipia felis ; tRNA-Ile and tRNA-Ala genes complete ; and 23
prokMSA_id:75549 AJ534670 alpha clone S15A-MN96
2.28.1.6.12.99.40393 OTU 25 seqs
prokMSA_id:4850 M59068 Rhodopseudomonas palustris str. GH
prokMSA_id:4851 D25312 Rhodopseudomonas palustris str. ATH 2.1.6 ATCC 17001
prokMSA_id:4852 U87771 Afipia genosp. 5 str. F8014
prokMSA_id:4858 AF123086 Rhodopseudomonas g-c str. g-c
prokMSA_id:4859 D84187 Rhodopseudomonas palustris
prokMSA_id:4861 AF184625 Rhodopseudomonas palustris str. No.7
prokMSA_id:4862 AF184626 Rhodopseudomonas palustris str. No.7
prokMSA_id:4863 D89811 Rhodopseudomonas palustris str. No.7
prokMSA_id:4864 AF123087 Rhodopseudomonas palustris str. ATH 2.1.6 ATCC 17001
prokMSA_id:4865 D12700 Rhodopseudomonas palustris str. ATH 2.1.6 ATCC 17001
prokMSA_id:19194 AF314063 Rhodopseudomonas palustris strain KD1 
prokMSA_id:21255 AB033756 Rhodopseudomonas palustris 
prokMSA_id:23531 AF314064 Rhodopseudomonas palustris strain BIS10 
prokMSA_id:27251 AF416661 Rhodopseudomonas palustris strain NCIB8288 
prokMSA_id:28497 AB027692 Rhodopseudomonas sp. B29 
prokMSA_id:37581 AF416654 Rhodopseudomonas palustris strain BIS6 
prokMSA_id:42172 AF416663 Rhodopseudomonas palustris strain DCP3 
prokMSA_id:47153 AF416653 Rhodopseudomonas palustris strain BIS3 
prokMSA_id:47905 AF314062 Rhodopseudomonas palustris strain AP1 
prokMSA_id:52084 AF416660 Rhodopseudomonas palustris strain WS17 
prokMSA_id:62340 AB079634 Rhodopseudomonas palustris isolate:VA2-2
prokMSA_id:62406 AF529115 alpha clone FTLM116 
prokMSA_id:67647 AY084079 Rhodopseudomonas palustris 
prokMSA_id:68786 AF487428 Rhodopseudomonas palustris strain Wai1S1 
prokMSA_id:73043 AB079680 Rhodopseudomonas palustris isolate:99D
2.28.1.6.12.99.40864 OTU 136 seqs
prokMSA_id:4829 M65248 Afipia felis
prokMSA_id:4830 AB021393 DSM 1083
prokMSA_id:4834 L35506 Nitrobacter winogradskyi ATCC 25381
prokMSA_id:4840 W. L11661 Nitrobacter winogradskyi str
prokMSA_id:4843 L11663 Nitrobacter hamburgensis str. X14
prokMSA_id:4844 L35502 Nitrobacter hamburgensis str. Nb14? or X14
prokMSA_id:4866 L11664 Rhodopseudomonas palustris str. ATH 2.1.6 ATCC 17001
prokMSA_id:4867 U87770 Afipia genosp. 4 str. G7812
prokMSA_id:4880 X87273 Bradyrhizobium lupini
prokMSA_id:4897 S46916 Bradyrhizobium japonicum LMG 6138
prokMSA_id:4913 U87767 Afipia genosp. 4 str. G6050
prokMSA_id:4914 U87768 Afipia genosp. 4 str. G3644
prokMSA_id:4921 U69637 Bradyrhizobium lupini str. KM50 90 USDA 3514
prokMSA_id:4929 Z94804 Bradyrhizobium genosp. G str. BDV5680
prokMSA_id:4931 Z94816 Bradyrhizobium genosp. H str. BDV5329
prokMSA_id:4933 AF178434 Bradyrhizobium ApB16 str. ApB16
prokMSA_id:4936 X66024 Bradyrhizobium japonicum LMG 6138
prokMSA_id:4938 D11345 Bradyrhizobium japonicum IAM 12608
prokMSA_id:4939 D14507 Bradyrhizobium sp. str. 55S
prokMSA_id:4941 D14508 Bradyrhizobium sp. str. 129
prokMSA_id:4950 D89028 str. HWK12
prokMSA_id:4967 U87759 Afipia broomeae str. F186
prokMSA_id:4971 U87761 Afipia broomeae str. G5958
prokMSA_id:4972 U87781 Afipia genosp. 10 str. G8996
prokMSA_id:4980 X87272 Bradyrhizobium japonicum
prokMSA_id:4983 Z94815 Bradyrhizobium genosp. F str. BDV5029
prokMSA_id:4984 AB003459 str. G14127
prokMSA_id:4995 AF159438 Bradyrhizobium Mm1-3 str. Mm1-3
prokMSA_id:4997 AF159436 Bradyrhizobium Pe1-3 str. Pe1-3
prokMSA_id:5001 Z94809 Bradyrhizobium genosp. C str. BDV5792
prokMSA_id:5002 Z94810 Bradyrhizobium genosp. K str. BDV5358
prokMSA_id:5005 Z94818 Bradyrhizobium genosp. I str. BDV5370
prokMSA_id:5006 Z94820 Bradyrhizobium genosp. J str. BDV5697
prokMSA_id:5008 Z94823 Bradyrhizobium genosp. O str. BDV5840
prokMSA_id:5010 AB003458 str. G14003
prokMSA_id:5025 S46917 Blastobacter denitrificans LMG 8443
prokMSA_id:5046 D86354 Bradyrhizobium sp. USDA 4362
prokMSA_id:5055 D78366 Agromonas oligotrophica JCM 1494
prokMSA_id:5058 X66025 Blastobacter denitrificans LMG 8443
prokMSA_id:16905 AB070564 Bradyrhizobium japonicum strain:NA6062
prokMSA_id:17737 AY055796 Nitrobacter winogradskyi 
prokMSA_id:17820 AF384139 Bradyrhizobium sp. Pplu1-1 
prokMSA_id:18027 AF363135 Bradyrhizobium japonicum strain MSDJ 5697 
prokMSA_id:19473 AF363121 Bradyrhizobium japonicum strain MSDJ 5584 
prokMSA_id:19767 AF363129 Bradyrhizobium japonicum strain MSDJ 5317 
prokMSA_id:20737 AF417549 Bradyrhizobium japonicum strain DASA24015 
prokMSA_id:20855 AJ250813 Bradyrhizobium liaoningense strain LMG 18230
prokMSA_id:20975 AF363124 Bradyrhizobium japonicum strain MSDJ 5582 
prokMSA_id:21129 AF363118 Bradyrhizobium sp. MSDJ 2047 
prokMSA_id:21490 AB070570 Bradyrhizobium japonicum strain:NA6545
prokMSA_id:21631 AF363145 Bradyrhizobium sp. MSDJ 5493 
prokMSA_id:22219 AJ292603 WD275 clone WD275
prokMSA_id:23425 AF363117 Bradyrhizobium sp. MSDJ 2024 
prokMSA_id:23776 AB070571 Bradyrhizobium japonicum strain:USDA135
prokMSA_id:24854 AF321214 Bradyrhizobium sp. strain Da3-1 
prokMSA_id:25095 AY055795 Nitrobacter sp. PJN1 
prokMSA_id:25125 AF363142 Bradyrhizobium sp. MSDJ 5728 
prokMSA_id:26267 AB029402 Bradyrhizobium liaoningense 
prokMSA_id:27411 AB070563 Bradyrhizobium japonicum strain:NA6059
prokMSA_id:27694 AF363150 Bradyrhizobium japonicum strain USDA 110 
prokMSA_id:27860 AF371935 clone p-5142-2Wb3 
prokMSA_id:29213 AF363113 Bradyrhizobium japonicum strain MSDJ 5605 
prokMSA_id:30965 AF363125 Bradyrhizobium japonicum strain MSDJ 5569 
prokMSA_id:31104 AF363128 Bradyrhizobium japonicum strain MSDJ 5327 
prokMSA_id:31138 AF230721 Bradyrhizobium sp. ORS2012 
prokMSA_id:33185 AF417547 Bradyrhizobium japonicum strain DASA38025 
prokMSA_id:33290 AF230722 Bradyrhizobium sp. ORS285 
prokMSA_id:34211 AF363147 Bradyrhizobium sp. MSDJ 5730 
prokMSA_id:34952 AF363131 Bradyrhizobium liaoningense strain 2043 
prokMSA_id:35279 AJ307939 mRNA clone sipK8
prokMSA_id:35319 AF363130 Bradyrhizobium japonicum strain MSDJ 5344 
prokMSA_id:35376 AY050540 Bradyrhizobium japonicum strain MSDJ 5565 
prokMSA_id:35423 AF445742 alpha clone SM2H01 
prokMSA_id:36027 AF363119 Bradyrhizobium japonicum strain MSDJ 5622 
prokMSA_id:36732 AF234888 Bradyrhizobium japonicum strain SEMIA 5079 complete 
prokMSA_id:37117 AF363133 Bradyrhizobium japonicum strain MSDJ 5718 
prokMSA_id:37374 AF363143 Bradyrhizobium sp. MSDJ 5494 
prokMSA_id:37715 AF363137 Bradyrhizobium japonicum strain MSDJ G49 
prokMSA_id:37744 AF230718 Bradyrhizobium sp. ORS2005 
prokMSA_id:37915 AF363151 Bradyrhizobium japonicum strain USDA 123 
prokMSA_id:38637 AB070568 Bradyrhizobium japonicum strain:NK5
prokMSA_id:39358 AF363136 Bradyrhizobium sp. MSDJ G17 
prokMSA_id:39826 AF384140 Bradyrhizobium sp. Pplu1-11 
prokMSA_id:41002 AF288304 Alpha 34632 
prokMSA_id:41718 AB070566 Bradyrhizobium japonicum strain:YCK295
prokMSA_id:42229 AJ295465 rape rhizosphere wr0004 
prokMSA_id:42291 AF363115 Bradyrhizobium japonicum strain MSDJ 5563 
prokMSA_id:43422 AF239254 Bradyrhizobium sp. STM461 
prokMSA_id:43451 AF286361 Bradyrhizobium japonicum 
prokMSA_id:44859 AF363139 Bradyrhizobium sp. MSDJ 2027 
prokMSA_id:45460 AF236086 Bradyrhizobium japonicum strain SEMIA 566 complete 
prokMSA_id:46384 AF363146 Bradyrhizobium sp. MSDJ 5729 
prokMSA_id:47296 AY055797 Nitrobacter sp. NRB5220 
prokMSA_id:47540 AF384138 Bradyrhizobium sp. Ppau3-25 
prokMSA_id:48441 AF363132 Bradyrhizobium liaoningense strain 2281 
prokMSA_id:49866 AF193818 Bradyrhizobium sp. B071 complete 
prokMSA_id:50192 AF363141 Bradyrhizobium sp. MSDJ 5727 
prokMSA_id:50479 AF363127 Bradyrhizobium japonicum strain MSDJ 5732 
prokMSA_id:50671 AF222751 Bradyrhizobium sp. WM9 
prokMSA_id:51333 AF363144 Bradyrhizobium sp. MSDJ 5495 
prokMSA_id:51967 AF239844 Bradyrhizobium japonicum PRY42 complete 
prokMSA_id:54256 AF417541 Bradyrhizobium japonicum strain DASA02007 
prokMSA_id:55721 AF208503 Bradyrhizobium japonicum strain USDA 122 ; tRNA-Ile and tRNA
prokMSA_id:55787 AF208506 Bradyrhizobium japonicum strain USDA 125 ; tRNA-Ile and tRNA
prokMSA_id:56218 AF293378 Bradyrhizobium japonicum strain USDA 59 ; tRNA-Ile and tRNA-
prokMSA_id:61020 AF530468 Bradyrhizobium japonicum isolate HA1 
prokMSA_id:61022 AF530467 Bradyrhizobium japonicum isolate SD5 
prokMSA_id:62331 AB079683 Bradyrhizobium sp. MAFF 210318 
prokMSA_id:62333 AB079679 Rhodopseudomonas sp. HMD89 
prokMSA_id:62335 AB079676 Bradyrhizobium sp. IRBG 228 
prokMSA_id:62336 AB079677 Bradyrhizobium sp. IRBG 230 
prokMSA_id:62337 AB079678 Rhodopseudomonas sp. HMD88 
prokMSA_id:62338 AB079675 Bradyrhizobium sp. IRBG 2 
prokMSA_id:62343 AB079633 Bradyrhizobium sp. BTAi 1 
prokMSA_id:63555 AY117677 Bradyrhizobium japonicum strain SEMIA 5085 complete 
prokMSA_id:64291 AY039015 Bradyrhizobium sp. ORS 3259 
prokMSA_id:67710 AB072412 Bradyrhizobium japonicum isolate:NA6043
prokMSA_id:68703 AF485365 Bradyrhizobium sp. LMTR 28 
prokMSA_id:68817 AF293382 Bradyrhizobium japonicum strain USDA 92 ; tRNA-Ile and tRNA-
prokMSA_id:68818 AF293381 Bradyrhizobium japonicum strain USDA 91 ; tRNA-Ile and tRNA-
prokMSA_id:69075 AF208515 Bradyrhizobium japonicum strain USDA 4 ; tRNA-Ile and tRNA-A
prokMSA_id:69144 AF208504 Bradyrhizobium japonicum strain USDA 123 ; tRNA-Ile and tRNA
prokMSA_id:69453 AF208514 Bradyrhizobium japonicum strain USDA 38 ; tRNA-Ile and tRNA-
prokMSA_id:69495 AF208517 Bradyrhizobium japonicum strain USDA 62 ; tRNA-Ile and tRNA-
prokMSA_id:69704 AF208511 Bradyrhizobium japonicum strain USDA 135 ; tRNA-Ile and tRNA
prokMSA_id:70036 AF208513 Bradyrhizobium liaoningense strain 2281 USDA 3622 ; tRNA-Ile
prokMSA_id:70284 AF208508 Bradyrhizobium japonicum strain USDA 127 ; tRNA-Ile and tRNA
prokMSA_id:71353 AF387321 Bradyrhizobium sp. C7T1 
prokMSA_id:74750 AF208507 Bradyrhizobium japonicum strain USDA 126 ; tRNA-Ile and tRNA
prokMSA_id:75450 AY166855 clone DCE47 
prokMSA_id:77282 AF236087 Bradyrhizobium japonicum strain SEMIA 586 complete 
prokMSA_id:77914 AB099659 Oligotropha carboxidovorans complete strain: S23
prokMSA_id:78897 AJ536879 clone JG30-KF-AS89
prokMSA_id:79448 AF382111 clone ZA2523c 
prokMSA_id:81286 AF514794 Bradyrhizobium sp. ORS199 
prokMSA_id:81409 AY169423 Bradyrhizobium japonicum 
2.28.1.6.12.99.41369 OTU 4 seqs
prokMSA_id:23765 AF417542 Bradyrhizobium japonicum strain DASA02010 
prokMSA_id:27428 AF417552 Bradyrhizobium japonicum strain DASA37011 
prokMSA_id:32699 AF239843 Bradyrhizobium japonicum PRY40 complete 
prokMSA_id:36971 AF239842 Bradyrhizobium japonicum PRY1 complete 
2.28.1.6.13 RDB.MARINUM_SUBGROUP 11 seqs
2.28.1.6.13.14653 OTU 1 seq
prokMSA_id:5067 AB009205 clone RFN49
2.28.1.6.13.14651 OTU 1 seq
prokMSA_id:5066 D30792 Rhodobium orientis str. MB312 JCM 9337
2.28.1.6.13.1795 OTU 1 seq
prokMSA_id:50080 AF143833 clone 4-Org2-27 
2.28.1.6.13.19303 OTU 1 seq
prokMSA_id:39831 AF445649 alpha clone SM1A09 
2.28.1.6.13.21572 OTU 1 seq
prokMSA_id:72005 AF143822 clone 4-Org1-14 
2.28.1.6.13.29841 OTU 4 seqs
prokMSA_id:5073 D30790 Rhodobium marinum DSM 2698
prokMSA_id:5074 D30791 Rhodopseudomonas sp. str. H. Gest HG/JF ATCC 35601
prokMSA_id:55679 AF513478 Rhizobiaceae PH34B 
prokMSA_id:63876 AB087720 Rhodopseudomonas julia complete 
2.28.1.6.13.5909 OTU 1 seq
prokMSA_id:20480 AF008564 Phyllobacterium rubiacearum complete 
2.28.1.6.13.832 OTU 1 seq
prokMSA_id:25832 AJ244806 Alpha SOGA29 
2.28.1.6.15 MSO.HUAKUII_SUBGROUP 24 seqs
2.28.1.6.15.12000 OTU 1 seq
prokMSA_id:38122 AF156710 Mesorhizobium sp. WG 
2.28.1.6.15.14724 OTU 1 seq
prokMSA_id:5085 U50166 Mesorhizobium loti str. 261 ICMP 3153
2.28.1.6.15.15120 OTU 1 seq
prokMSA_id:5104 AJ011919 Roseospirillum parvum str. 930I
2.28.1.6.15.15292 OTU 1 seq
prokMSA_id:76556 AJ518780 alpha clone JG37-AG-141
2.28.1.6.15.20514 OTU 1 seq
prokMSA_id:79154 AB099999 sequences clone: IndB1-38
2.28.1.6.15.40650 OTU 19 seqs
prokMSA_id:5081 X68391 Rhizobium sp. LMG 7854
prokMSA_id:5082 D12791 Mesorhizobium loti IAM 13588
prokMSA_id:5083 Y14160 Mesorhizobium loti LMG 6124
prokMSA_id:5084 Z94807 Mesorhizobium genosp. T str. BDV5908
prokMSA_id:5086 Y14158 Mesorhizobium plurifarium str. ORS 1032 LMG 11892
prokMSA_id:5089 Y14161 Mesorhizobium plurifarium LMG 10056
prokMSA_id:5091 D13431 Mesorhizobium huakuii IFO 15243
prokMSA_id:5094 AF041442 Mesorhizobium amorphae ACCC 19665
prokMSA_id:5096 Y14159 Mesorhizobium loti LMG 6123
prokMSA_id:5097 Z94819 Mesorhizobium genosp. U str. BDV5514
prokMSA_id:5098 AF041444 Mesorhizobium 'SH 15003' str. SH 15003
prokMSA_id:5099 X68389 Mesorhizobium plurifarium LMG 7836
prokMSA_id:20161 AF410897 Mesorhizobium sp. Lo7-12 
prokMSA_id:37613 AF282928 Mesorhizobium sp. USDA 3466 
prokMSA_id:44758 AP003001 Mesorhizobium loti complete genome section 8/21
prokMSA_id:46665 NC_002678 Mesorhizobium loti complete genome
prokMSA_id:71992 AJ295080 Mesorhizobium plurifarium strain ORS1255 LMG 15320
prokMSA_id:74017 AJ295079 Mesorhizobium plurifarium strain ORS1096 LMG 15298
prokMSA_id:82013 AF514800 Mesorhizobium sp. ORS207 
2.28.1.6.16 MSO.LOTI_SUBGROUP 45 seqs
2.28.1.6.16.11722 OTU 1 seq
prokMSA_id:66931 AJ306768 clone SHA-85
2.28.1.6.16.126 OTU 1 seq
prokMSA_id:79374 AB100000 sequences clone: IndB1-49
2.28.1.6.16.13926 OTU 1 seq
prokMSA_id:60656 AF406516 alpha clone AEGEAN_108 
2.28.1.6.16.14003 OTU 1 seq
prokMSA_id:60695 AF534573 Phyllobacteriaceae NL21 
2.28.1.6.16.14434 OTU 1 seq
prokMSA_id:24063 AF441726 Alpha Kaza-27 
2.28.1.6.16.15005 OTU 1 seq
prokMSA_id:24111 AF150703 Elbe River snow isolate Iso26 
2.28.1.6.16.15139 OTU 1 seq
prokMSA_id:5110 AF097813 clone 49519 
2.28.1.6.16.15132 OTU 1 seq
prokMSA_id:46411 AJ318143 alpha clone BIhii25
2.28.1.6.16.15204 OTU 1 seq
prokMSA_id:5138 L20802 str. ER2
2.28.1.6.16.15197 OTU 1 seq
prokMSA_id:5136 U78037 unnamed organism
2.28.1.6.16.15192 OTU 1 seq
prokMSA_id:5133 Y11584 str. Mena 25/4-1 DSM 11455
2.28.1.6.16.15168 OTU 1 seq
prokMSA_id:5126 AB016848 str. MBIC3923
2.28.1.6.16.15200 OTU 1 seq
prokMSA_id:5137 AB015246 str. JTB260
2.28.1.6.16.15194 OTU 1 seq
prokMSA_id:5135 D88524 Ahrensia kielensis IAM 12618
2.28.1.6.16.15215 OTU 1 seq
prokMSA_id:39227 AF323256 Gram negative B1G-2 
2.28.1.6.16.16652 OTU 1 seq
prokMSA_id:68960 AJ318131 clone BIfdi7
2.28.1.6.16.16676 OTU 1 seq
prokMSA_id:68974 AY033325 alpha MB13F01 ; tRNA-Ile and tRNA-Ala genes complete ; and 2
2.28.1.6.16.18306 OTU 1 seq
prokMSA_id:25284 AJ318163 alpha clone BIri24
2.28.1.6.16.19610 OTU 1 seq
prokMSA_id:25420 AF245619 alpha NAC1-6 
2.28.1.6.16.21332 OTU 1 seq
prokMSA_id:49166 AF143830 clone 4-Org2-22 
2.28.1.6.16.33 OTU 1 seq
prokMSA_id:79338 AB099936 sequences clone: IheB2-3
2.28.1.6.16.37687 OTU 4 seqs
prokMSA_id:5145 AF072542 Pseudaminobacter salicylatoxidans str. BN12
prokMSA_id:25630 AF325730 Rhizobium sp. N1 
prokMSA_id:32754 AF234721 sludge A7 
prokMSA_id:38141 AJ294416 Pseudaminobacter salicylatoxidans strain KTC001
2.28.1.6.16.41360 OTU 2 seqs
prokMSA_id:21876 AF279889 Rhizobium sp. H-4 
prokMSA_id:23504 AF325769 Rhizobium sp. E-13 
2.28.1.6.16.42405 OTU 3 seqs
prokMSA_id:5114 AJ132378 Defluvibacter lusatiae DSM 11099
prokMSA_id:37701 AF323257 Gram negative B4G-1A 
prokMSA_id:54913 AF323261 Gram negative B5P-1 
2.28.1.6.16.42604 OTU 9 seqs
prokMSA_id:5107 AJ011759 Aminobacter aminovorans str. TK3001 DSM 7048
prokMSA_id:5109 AF107722 str. CC495
prokMSA_id:5139 AJ011761 Aminobacter niigataensis str. DM-81 DSM 7050
prokMSA_id:5140 AJ011762 Chelatobacter heintzii DSM 6450
prokMSA_id:5141 AF034798 str. IMB-1
prokMSA_id:5144 AJ011760 Aminobacter aganoensis str. TH-3 DSM 7051
prokMSA_id:31369 AF246220 Pseudaminobacter sp. C147 
prokMSA_id:31415 AJ278249 Mesorhizobium chacoense strain PR5
prokMSA_id:49052 AF377867 clone COX1 
2.28.1.6.16.42943 OTU 4 seqs
prokMSA_id:5115 D12789 Phyllobacterium myrsinacearum IAM 13584
prokMSA_id:5118 AJ011330 Phyllobacterium myrsinacearum str. HM35
prokMSA_id:5120 X98418 Nanobacterium sanguineum str. Seralab FBS batch 901045
prokMSA_id:35523 AJ295441 Rape rhizosphere tsb051 
2.28.1.6.16.7531 OTU 1 seq
prokMSA_id:81497 AY195845 Mesorhizobium ciceri 
2.28.1.6.16.7935 OTU 1 seq
prokMSA_id:27926 AF143828 clone 4-Org2-4 
2.28.1.6.17 MSO.TIANSHANENSE 2 seqs
2.28.1.6.17.15285 OTU 1 seq
prokMSA_id:5163 AF003376 Rhizobium SH2672 str. SH2672
2.28.1.6.17.15284 OTU 1 seq
prokMSA_id:5162 U71079 Mesorhizobium tianshanense str. A-1BS DSM 11417
2.28.1.6.18 BRUCELLA_ASSEMBLAGE 53 seqs
2.28.1.6.18.13800 OTU 1 seq
prokMSA_id:31117 AF229848 Ochrobactrum sp. PR17 complete 
2.28.1.6.18.15287 OTU 1 seq
prokMSA_id:5164 D63836 Ochrobactrum sp. IFO 12950
2.28.1.6.18.15337 OTU 1 seq
prokMSA_id:5180 X54743 Solomonas fluorantheni
2.28.1.6.18.15387 OTU 1 seq
prokMSA_id:76582 AJ519939 Ochrobactrum gallinifaecis 
2.28.1.6.18.15386 OTU 1 seq
prokMSA_id:5194 AJ223456 str. SS5
2.28.1.6.18.1589 OTU 1 seq
prokMSA_id:79545 AF382120 clone ZA3420c 
2.28.1.6.18.27271 OTU 2 seqs
prokMSA_id:38231 AF445695 delta clone SM1G01 
prokMSA_id:43604 AF445705 delta clone SM1H08 
2.28.1.6.18.33239 OTU 17 seqs
prokMSA_id:5169 L26169 Brucella melitensis ATCC 23444
prokMSA_id:5170 L26168 Brucella melitensis ATCC 25840
prokMSA_id:5175 L26166 Brucella melitensis ATCC 23456
prokMSA_id:5189 L37584 Brucella melitensis
prokMSA_id:5191 AF091353 Brucella M2357/93 str. M2357/93
prokMSA_id:5192 AF091354 Brucella abortus str. 544
prokMSA_id:5204 X13695 Brucella melitensis str. 11/19
prokMSA_id:18759 AF220148 Brucella melitensis operon B complete 
prokMSA_id:41420 NC_003317 Brucella melitensis chromosome I complete 
prokMSA_id:44325 NC_003318 Brucella melitensis chromosome II complete 
prokMSA_id:49775 AF220147 Brucella melitensis operon A complete 
prokMSA_id:52507 AF220149 Brucella melitensis operon C complete 
prokMSA_id:56114 AE014476 Brucella suis 1330 chromosome I section 162 of 190 of the co
prokMSA_id:58033 NC_004311 Brucella suis 1330 chromosome II complete 
prokMSA_id:58651 NC_004310 Brucella suis 1330 chromosome I complete 
prokMSA_id:58793 AE014604 Brucella suis 1330 chromosome II section 100 of 108 of the c
prokMSA_id:59146 AE014457 Brucella suis 1330 chromosome I section 143 of 190 of the co
2.28.1.6.18.37866 OTU 15 seqs
prokMSA_id:5179 AJ242580 Ochrobactrum anthropi LMG 5140
prokMSA_id:5184 U88442 Ochrobactrum anthropi LMG 3310
prokMSA_id:5185 U88443 Ochrobactrum anthropi LMG 3329
prokMSA_id:5186 U88444 Ochrobactrum anthropi LMG 2320
prokMSA_id:5187 AJ002812 Ochrobactrum sp. str. S1
prokMSA_id:27684 AF229875 Ochrobactrum sp. 4FB9 
prokMSA_id:30119 AF229865 Ochrobactrum sp. 2FB10 
prokMSA_id:48732 AJ276036 Ochrobactrum anthropi isolate GH 1568
prokMSA_id:49728 AJ249458 Ochrobactrum sp. isolate FRG11/sat
prokMSA_id:56400 AF508091 Ochrobactrum tritici isolate TG23 
prokMSA_id:59527 AB091758 Ochrobactrum tritici complete 
prokMSA_id:66248 AF508090 Ochrobactrum tritici isolate TG13 
prokMSA_id:66250 AF508092 Ochrobactrum tritici isolate TG161 
prokMSA_id:66251 AF508089 Ochrobactrum tritici isolate TJ3 
prokMSA_id:67340 AF494544 Ochrobactrum sp. BPC6 
2.28.1.6.18.39514 OTU 2 seqs
prokMSA_id:5165 AJ242581 Ochrobactrum grignonense str. OgA9a
prokMSA_id:70316 AF452128 Ochrobactrum sp. LMG 20564 
2.28.1.6.18.39845 OTU 2 seqs
prokMSA_id:58110 AF498714 Ellin332 
prokMSA_id:58112 AF498711 Ellin329 
2.28.1.6.18.41190 OTU 7 seqs
prokMSA_id:5195 U70978 Ochrobactrum intermedium str. CNS 2-75 LMG 3301
prokMSA_id:5196 AJ249720 Ochrobactrum intermedium str. 609360 I
prokMSA_id:5197 U88440 Ochrobactrum anthropi LMG 3306
prokMSA_id:5198 AJ242582 Ochrobactrum intermedium str. OiC8-6
prokMSA_id:5199 AJ242583 Ochrobactrum intermedium str. OiC8a
prokMSA_id:57487 AF526513 Ochrobactrum intermedium isolate ADV14 
prokMSA_id:72183 AJ415570 Ochrobactrum intermedium strain 0102 808
2.28.1.6.18.42019 OTU 2 seqs
prokMSA_id:24208 AF229879 Ochrobactrum sp. 4FB13 
prokMSA_id:70645 AY040351 Ochrobactrum sp. LMG 20570 
2.28.1.6.19 DG.ZOOGLOEOIDES_SUBGROUP_I 6 seqs
2.28.1.6.19.11095 OTU 1 seq
prokMSA_id:66898 AJ440750 Gram-negative DM 2 isolate DM 2
2.28.1.6.19.11637 OTU 1 seq
prokMSA_id:66900 AJ440749 Gram-negative DM 1 isolate DM 1
2.28.1.6.19.15719 OTU 1 seq
prokMSA_id:5205 D14255 Duganella zoogloeoides IAM 12669
2.28.1.6.19.41018 OTU 2 seqs
prokMSA_id:5207 X74915 Duganella zoogloeoides ATCC 19623
prokMSA_id:55816 AF502218 clone HP1B02 
2.28.1.6.19.8631 OTU 1 seq
prokMSA_id:59345 AF502219 clone HP1B28 
2.28.1.6.20 SRH.FREDII_SUBGROUP 42 seqs
2.28.1.6.20.15765 OTU 1 seq
prokMSA_id:5231 Z78204 Sinorhizobium sp. HAMBI 1552
2.28.1.6.20.15797 OTU 1 seq
prokMSA_id:5245 D14509 Sinorhizobium meliloti IAM 12611
2.28.1.6.20.15840 OTU 1 seq
prokMSA_id:5258 Z78203 Sinorhizobium sp. HAMBI 1489
2.28.1.6.20.1623 OTU 1 seq
prokMSA_id:19385 AJ292610 WD2107 clone WD2107
2.28.1.6.20.19567 OTU 1 seq
prokMSA_id:26055 AY024335 Sinorhizobium morelense complete 
2.28.1.6.20.34653 OTU 15 seqs
prokMSA_id:5220 D12783 Sinorhizobium meliloti IAM 12611
prokMSA_id:5226 X67222 Sinorhizobium meliloti LMG 6133
prokMSA_id:5227 AJ004861 Sinorhizobium MSMC411 str. MSMC411
prokMSA_id:5232 AF054930 Rhizobium XJ96060 str. XJ96060
prokMSA_id:5233 AF054931 Rhizobium XJ96408 str. XJ96408
prokMSA_id:27872 AF285964 Sinorhizobium sp. S007 
prokMSA_id:43724 AY034028 Sinorhizobium kummerowiae 
prokMSA_id:46924 NC_003047 Sinorhizobium meliloti 1021 complete genomes
prokMSA_id:48966 AJ295071 Sinorhizobium meliloti strain ORS1044 LMG 15285
prokMSA_id:61016 AF533684 Sinorhizobium meliloti strain WSM1701 
prokMSA_id:63996 AL591792 Sinorhizobium meliloti 1021 complete chromosome; segment 11/
prokMSA_id:64001 AL591791 Sinorhizobium meliloti 1021 complete chromosome; segment 10/
prokMSA_id:64021 AL591782 Sinorhizobium meliloti 1021 complete chromosome; segment 1/1
prokMSA_id:77951 AF364067 Sinorhizobium kummerowiae 
prokMSA_id:82287 AY196963 Sinorhizobium meliloti strain LMTR32 
2.28.1.6.20.39773 OTU 4 seqs
prokMSA_id:5218 AF191738 Ensifer adhaerens ATCC 33499
prokMSA_id:5219 AF191739 Ensifer adhaerens ATCC 33212
prokMSA_id:30671 AY027503 Arsenite-oxidizing NT-4 
prokMSA_id:64288 AY040360 Ensifer adhaerens 
2.28.1.6.20.40115 OTU 2 seqs
prokMSA_id:27318 AY056832 Sinorhizobium sp. JL84 
prokMSA_id:63199 AJ420773 Sinorhizobium adhaerens strain 5D19
2.28.1.6.20.40368 OTU 4 seqs
prokMSA_id:5210 X68390 Sinorhizobium saheli LMG 7837
prokMSA_id:42233 AF227756 Sinorhizobium sp. C9 
prokMSA_id:51380 AF285963 Sinorhizobium sp. S005 
prokMSA_id:74439 AJ295078 Sinorhizobium sp. ORS1085 strain ORS1085 LMG 15292
2.28.1.6.20.42258 OTU 2 seqs
prokMSA_id:16308 AF423281 soil clone 60-2 
prokMSA_id:36995 AF423219 soil clone 1306-2 
2.28.1.6.20.42243 OTU 6 seqs
prokMSA_id:5217 D14516 Sinorhizobium fredii ATCC 35423
prokMSA_id:5255 X67231 Sinorhizobium fredii LMG 6217
prokMSA_id:5256 AJ004860 Sinorhizobium MSMC310 str. MSMC310
prokMSA_id:5260 D12796 Sinorhizobium xinjiangensis IAM 14142
prokMSA_id:24151 AF268072 Sinorhizobium sp. 15C-4 
prokMSA_id:66158 AF506513 Sinorhizobium sp. CFNEI 156 
2.28.1.6.20.5594 OTU 1 seq
prokMSA_id:49903 AF445675 alpha clone SM1D09 
2.28.1.6.20.629 OTU 1 seq
prokMSA_id:71591 AF143823 clone 4-Org1-36 
2.28.1.6.20.6631 OTU 1 seq
prokMSA_id:74157 AY007683 Unknown marine alpha JP57 
2.28.1.6.20.8460 OTU 1 seq
prokMSA_id:74392 AJ295077 Sinorhizobium sp. ORS1236 strain ORS1236 LMG 18076
2.28.1.6.21 BLB.CAPSULATUS_SUBGROUP 10 seqs
2.28.1.6.21.11720 OTU 1 seq
prokMSA_id:66930 AJ306769 clone SHA-91
2.28.1.6.21.13002 OTU 1 seq
prokMSA_id:59901 AY133098 alpha clone ccspost215 
2.28.1.6.21.14795 OTU 1 seq
prokMSA_id:76490 AJ534667 alpha clone S15A-MN24
2.28.1.6.21.15864 OTU 1 seq
prokMSA_id:5263 X73042 Blastobacter capsulatus ATCC 43294
2.28.1.6.21.15869 OTU 1 seq
prokMSA_id:5266 X73041 Blastobacter aggregatus ATCC 43293
2.28.1.6.21.16399 OTU 1 seq
prokMSA_id:46647 AF441730 Alpha Kaza-35 
2.28.1.6.21.17370 OTU 1 seq
prokMSA_id:32320 AF441727 Alpha Kaza-29 
2.28.1.6.21.42024 OTU 3 seqs
prokMSA_id:5267 U86344 Rhizobium giardinii str. H152
prokMSA_id:16351 AF423251 soil clone 353-2 
prokMSA_id:74374 AF357225 Sinorhizobium sp. 9702-M4 
2.28.1.6.23 RHB.TROPICI_SUBGROUP 19 seqs
2.28.1.6.23.15898 OTU 1 seq
prokMSA_id:5275 D12798 Rhizobium tropici IAM 14206
2.28.1.6.23.15934 OTU 1 seq
prokMSA_id:5289 D12788 Agrobacterium rhizogenes IAM 13570
2.28.1.6.23.29672 OTU 2 seqs
prokMSA_id:5276 X67234 Rhizobium tropici str. IIA LMG 9517
prokMSA_id:63509 AY117667 Rhizobium tropici strain PRF77 complete 
2.28.1.6.23.40525 OTU 10 seqs
prokMSA_id:5277 U89832 Rhizobium tropici CIAT 899
prokMSA_id:5278 X67233 Rhizobium leguminosarum str. C-O5 LMG 9518
prokMSA_id:5280 U38469 Rhizobium tropici
prokMSA_id:5283 D14504 Agrobacterium tumefaciens str. K-Ag-3
prokMSA_id:5284 Z94806 Rhizobium genosp. Q str. BDV5102
prokMSA_id:17261 AF417564 Rhizobium leguminosarum strain DASA23046 
prokMSA_id:24266 AF417562 Rhizobium leguminosarum strain DASA23002 
prokMSA_id:47187 AF417563 Rhizobium leguminosarum strain DASA23111 
prokMSA_id:48790 AF417565 Rhizobium leguminosarum strain DASA23052 
prokMSA_id:76567 AY166841 Rhizobium tropici UPRM8033 
2.28.1.6.23.42520 OTU 4 seqs
prokMSA_id:5273 X67224 Agrobacterium rhizogenes LMG 152
prokMSA_id:5281 D14501 Agrobacterium rhizogenes IFO 13257
prokMSA_id:5292 X67232 Rhizobium sp. LMG 9509
prokMSA_id:5293 D14505 Agrobacterium tumefaciens str. Ch-Ag-4
2.28.1.6.23.8911 OTU 1 seq
prokMSA_id:82246 AF514801 Rhizobium sp. ORS214 
2.28.1.6.24 RHB.LEGUMINOSARUM_SUBGROUP 26 seqs
2.28.1.6.24.1 RHB.LEGU11_SUBGROUP 18 seqs
2.28.1.6.24.1.13814 OTU 1 seq
prokMSA_id:29952 AF234689 sludge H6 
2.28.1.6.24.1.16290 OTU 1 seq
prokMSA_id:5303 AF195031 Rhizobium CCBAU71462 CCBAU 71462
2.28.1.6.24.1.40614 OTU 4 seqs
prokMSA_id:20185 AF417560 Rhizobium gallicum strain DASA12023 
prokMSA_id:39270 AF417557 Rhizobium gallicum strain DASA12020 
prokMSA_id:45894 AF417561 Rhizobium gallicum strain DASA12024 
prokMSA_id:49093 AF417558 Rhizobium gallicum strain DASA12005 
2.28.1.6.24.1.41378 OTU 6 seqs
prokMSA_id:5308 Y10170 Rhizobium sp. str. IS 123
prokMSA_id:5332 Y10174 Rhizobium sp. str. CC 1335
prokMSA_id:5333 Y10173 Rhizobium sp. str. HCNT 1
prokMSA_id:26893 AF325772 Rhizobium sp. WSM749 
prokMSA_id:29072 AF279266 Rhizobium sp. WSM1583 
prokMSA_id:41100 AF325773 Rhizobium sp. He-853 
2.28.1.6.24.1.42178 OTU 4 seqs
prokMSA_id:5311 AF008130 Rhizobium gallicum str. R602sp
prokMSA_id:5312 AF008126 Rhizobium gallicum str. CbS-1
prokMSA_id:5314 AF008128 Rhizobium gallicum str. CbS-18
prokMSA_id:5315 AF008129 Rhizobium gallicum str. FL27
2.28.1.6.24.1.7477 OTU 1 seq
prokMSA_id:74262 AF417559 Rhizobium gallicum strain DASA12010 
2.28.1.6.24.1.8636 OTU 1 seq
prokMSA_id:59347 AF502221 clone HP1B26 
2.28.1.6.24.2 RHB.LEGU13_SUBGROUP 5 seqs
2.28.1.6.24.2.16371 OTU 1 seq
prokMSA_id:5335 U89831 Rhizobium leguminosarum USDA 2508
2.28.1.6.24.2.16369 OTU 1 seq
prokMSA_id:5334 U29386 Rhizobium leguminosarum USDA 2370
2.28.1.6.24.2.16429 OTU 1 seq
prokMSA_id:5357 U89826 Rhizobium leguminosarum USDA 2434
2.28.1.6.24.2.16454 OTU 1 seq
prokMSA_id:5364 Z94803 Rhizobium genosp. R str. BDV5365
2.28.1.6.24.2.3235 OTU 1 seq
prokMSA_id:18988 AY039233 Rhizobium sp. NZN7 
2.28.1.6.24.3 RHB.SP3618_SUBGROUP 3 seqs
2.28.1.6.24.3.16506 OTU 1 seq
prokMSA_id:5389 U29387 Rhizobium sp. str. RCR 3618D USDA 2947
2.28.1.6.24.3.42779 OTU 2 seqs
prokMSA_id:24692 AB069724 Rhizobium sp. AC100 
prokMSA_id:41445 AJ271902 Rhizobium sp. strain rob20
2.28.1.6.25 RHB.HAINANENSE 1 seq
2.28.1.6.25.16525 OTU 1 seq
prokMSA_id:5393 U71078 Rhizobium hainanense str. I66 CCBAU 57015
2.28.1.6.26 AGROBACTERIUM_SUBGROUP 92 seqs
2.28.1.6.26.1 DV.RIBOFLAVINA_SUBGROUP 13 seqs
2.28.1.6.26.1.16133 OTU 1 seq
prokMSA_id:31502 AY048890 L3-17C4 
2.28.1.6.26.1.16532 OTU 1 seq
prokMSA_id:5397 AF001764 clone RF32
2.28.1.6.26.1.17014 OTU 1 seq
prokMSA_id:5403 AJ229177 clone BSV03
2.28.1.6.26.1.17488 OTU 1 seq
prokMSA_id:61821 AF529343 alpha clone CLi8 
2.28.1.6.26.1.18395 OTU 1 seq
prokMSA_id:77616 AB089085 alpha clone:Rs-B50
2.28.1.6.26.1.18994 OTU 1 seq
prokMSA_id:78324 AB089090 alpha clone:Rs-D84
2.28.1.6.26.1.19151 OTU 1 seq
prokMSA_id:78389 AB089095 alpha clone:Rs-J48
2.28.1.6.26.1.21347 OTU 1 seq
prokMSA_id:19085 AJ318134 alpha clone BIfdii32
2.28.1.6.26.1.23166 OTU 3 seqs
prokMSA_id:19620 U53824 Manganese-oxidizing SI85-9A1 
prokMSA_id:50645 AJ278784 strain R7951
prokMSA_id:77748 AY178863 Fulvimarina litoralis strain HTCC2156 
2.28.1.6.26.1.5486 OTU 1 seq
prokMSA_id:57724 AF469072 Devosia neptuniae strain J1 
2.28.1.6.26.1.9865 OTU 1 seq
prokMSA_id:75186 AJ532704 alpha clone JG34-KF-245
2.28.1.6.26.2 LIB.SP_SUBGROUP 1 seq
2.28.1.6.26.2.17015 OTU 1 seq
prokMSA_id:5405 L22533 Liberobacter sp. str. Nelspruit
2.28.1.6.26.3 AG.TUMEFACIENS_SUBGROUP 59 seqs
2.28.1.6.26.3.10677 OTU 1 seq
prokMSA_id:44538 AF422650 clone d041 
2.28.1.6.26.3.11783 OTU 1 seq
prokMSA_id:66958 AF482682 Agrobacterium sp. PB 
2.28.1.6.26.3.13741 OTU 1 seq
prokMSA_id:37752 AY027505 Arsenite-oxidizing BEN-5 
2.28.1.6.26.3.17060 OTU 1 seq
prokMSA_id:5424 AF003374 Rhizobium SH19312 str. SH19312
2.28.1.6.26.3.17038 OTU 1 seq
prokMSA_id:5416 Z30542 Agrobacterium sp. str. AF3.10
2.28.1.6.26.3.18419 OTU 1 seq
prokMSA_id:77622 AB074597 alpha clone:APe4_7
2.28.1.6.26.3.21131 OTU 1 seq
prokMSA_id:26211 AF422644 clone d035 
2.28.1.6.26.3.34160 OTU 26 seqs
prokMSA_id:5409 D14503 Agrobacterium rubi IFO 13261
prokMSA_id:5410 M11223 Agrobacterium tumefaciens ATCC 4720 alpha purple
prokMSA_id:5413 X67223 Agrobacterium tumefaciens str. ICPB TT111 LMG 196
prokMSA_id:5414 D12787 Agrobacterium rubi IAM 13569
prokMSA_id:5415 D13943 Agrobacterium tumefaciens str. IAM 13558
prokMSA_id:5417 D13294 Agrobacterium tumefaciens IAM 14141
prokMSA_id:5418 D14500 Agrobacterium tumefaciens NCPPB 2437
prokMSA_id:5420 D12784 Agrobacterium tumefaciens IAM 13129
prokMSA_id:5421 AF195069 Rhizobium N220 str. N220
prokMSA_id:5423 Y10169 Rhizobium sp. str. Esparseta 3
prokMSA_id:5430 X67228 Agrobacterium rubi LMG 156
prokMSA_id:16302 AJ389886 Agrobacterium tumefaciens strain CFBP2712
prokMSA_id:17155 AJ389893 Agrobacterium tumefaciens strain CFBP2243
prokMSA_id:17589 AJ389896 Agrobacterium tumefaciens strain S377
prokMSA_id:19912 AJ389887 Agrobacterium tumefaciens strain CFBP2885
prokMSA_id:20046 AJ389888 Agrobacterium tumefaciens strain CFBP2654
prokMSA_id:28007 AJ389892 Agrobacterium tumefaciens strain CFBP2879
prokMSA_id:30092 AJ389890 Agrobacterium tumefaciens strain CFBP2717
prokMSA_id:36063 AY029336 Rhizobium sp. GH-2001 
prokMSA_id:42402 AJ389897 Agrobacterium tumefaciens strain CIP111-78
prokMSA_id:43693 AJ389889 Agrobacterium tumefaciens strain CFBP2655
prokMSA_id:49219 AJ389891 Agrobacterium tumefaciens strain CFBP2714
prokMSA_id:51761 AJ389904 Agrobacterium radiobacter strain ATCC19358
prokMSA_id:52254 AJ389895 Agrobacterium tumefaciens strain S56
prokMSA_id:52570 AJ295445 Rape rhizosphere tsb058 
prokMSA_id:80249 AY221181 Agrobacterium tumefaciens EBRI 25 
2.28.1.6.26.3.41909 OTU 17 seqs
prokMSA_id:5425 AJ130719 Agrobacterium radiobacter LMG 383
prokMSA_id:5426 AJ130720 Agrobacterium sp. LMG 11915
prokMSA_id:24608 AJ389901 Agrobacterium tumefaciens strain Zutra3-1
prokMSA_id:26040 AJ389902 Agrobacterium tumefaciens strain NCPPB1641
prokMSA_id:27184 AE009324 Agrobacterium tumefaciens str. C58 linear chromosome section
prokMSA_id:32570 AE008167 Agrobacterium tumefaciens str. C58 circular chromosome secti
prokMSA_id:41643 AJ389903 Agrobacterium tumefaciens strain RV3
prokMSA_id:41750 NC_003062 Agrobacterium tumefaciens strain C58 circular chromosome com
prokMSA_id:42673 NC_003305 Agrobacterium tumefaciens str. C58 U. Washington chromosome 
prokMSA_id:43713 AE009201 Agrobacterium tumefaciens strain C58 circular chromosome sec
prokMSA_id:44308 AE008265 Agrobacterium tumefaciens str. C58 linear chromosome section
prokMSA_id:44698 AE008290 Agrobacterium tumefaciens str. C58 linear chromosome section
prokMSA_id:45881 AE008980 Agrobacterium tumefaciens strain C58 circular chromosome sec
prokMSA_id:49778 AE009348 Agrobacterium tumefaciens str. C58 linear chromosome section
prokMSA_id:53312 AE007947 Agrobacterium tumefaciens str. C58 circular chromosome secti
prokMSA_id:53840 NC_003304 Agrobacterium tumefaciens str. C58 U. Washington chromosome 
prokMSA_id:79849 AY221180 Agrobacterium tumefaciens EBRI 20 
2.28.1.6.26.3.42647 OTU 4 seqs
prokMSA_id:59889 AY133104 alpha clone ccspost2181 
prokMSA_id:62396 AF529121 alpha clone FTLM218 
prokMSA_id:66246 AF508094 Agrobacterium tumefaciens isolate TJ6 
prokMSA_id:66249 AF508093 Agrobacterium tumefaciens isolate C4 
2.28.1.6.26.3.42641 OTU 4 seqs
prokMSA_id:55671 AF508098 Agrobacterium tumefaciens isolate TG12 
prokMSA_id:56300 AF508099 Agrobacterium tumefaciens isolate TG14 
prokMSA_id:66244 AF508097 Agrobacterium tumefaciens isolate S4 
prokMSA_id:66245 AF508096 Agrobacterium tumefaciens isolate N21 
2.28.1.6.26.3.7117 OTU 1 seq
prokMSA_id:27851 AJ389909 Agrobacterium tumefaciens strain Zutra F/1
2.28.1.6.26.4 AG.VITIS_SUBGROUP 19 seqs
2.28.1.6.26.4.12248 OTU 1 seq
prokMSA_id:51992 AF423220 soil clone 1315-2 
2.28.1.6.26.4.17111 OTU 1 seq
prokMSA_id:5441 Y17047 Allorhizobium undicola LMG 11875
2.28.1.6.26.4.17115 OTU 1 seq
prokMSA_id:5447 D14512 Rhizobium sp. str. 113
2.28.1.6.26.4.31157 OTU 2 seqs
prokMSA_id:5450 AF159452 str. NT-25
prokMSA_id:5451 AF159453 str. NT-26
2.28.1.6.26.4.32322 OTU 7 seqs
prokMSA_id:5431 U28505 Agrobacterium vitis str. S4
prokMSA_id:5437 D12795 Agrobacterium vitis IAM 14140
prokMSA_id:5445 X67225 Agrobacterium vitis LMG 8750
prokMSA_id:25961 AJ389911 Agrobacterium vitus strain CFBP2617
prokMSA_id:31290 AJ389910 Agrobacterium vitis strain CFBP2678
prokMSA_id:33557 AJ389912 Agrobacterium vitus strain CFBP2736
prokMSA_id:46044 AJ389913 Agrobacterium vitus strain CFBP2737
2.28.1.6.26.4.42398 OTU 2 seqs
prokMSA_id:77394 AY167830 Rhizobium galegae strain SAFR-031 
prokMSA_id:77532 AY167831 Rhizobium galegae strain SAFR-030 
2.28.1.6.26.4.42410 OTU 5 seqs
prokMSA_id:5438 D14510 Rhizobium sp. str. OK-55
prokMSA_id:5446 D12793 Rhizobium galegae IAM 13631
prokMSA_id:5448 X67226 Rhizobium galegae str. gal 1261 LMG 6214
prokMSA_id:5449 AF025852 Rhizobium huautlense str. S02
prokMSA_id:25256 AF285965 Sinorhizobium sp. S009 
2.28.1.6.27 BARTONELLA_SUBGROUP 46 seqs
2.28.1.6.27.10045 OTU 1 seq
prokMSA_id:43831 AF373845 Bartonella sp. Deer 159/660/1 
2.28.1.6.27.17156 OTU 1 seq
prokMSA_id:5468 AB015523 str. DB1-14
2.28.1.6.27.17175 OTU 1 seq
prokMSA_id:5472 Z70003 Bartonella bacilliformis str. LA6.3
2.28.1.6.27.17751 OTU 1 seq
prokMSA_id:5504 AB015579 str. BD7-3
2.28.1.6.27.41943 OTU 37 seqs
prokMSA_id:5462 AJ002139 Bartonella alsatica str. 382 CIP 105477
prokMSA_id:5463 Z31349 Bartonella grahamii str. V2 NCTC 12860
prokMSA_id:5465 L35052 Bartonella vinsonii subsp. berkhoffii str. 93-C01 ATCC 51672
prokMSA_id:5470 M65249 Bartonella bacilliformis ATCC 35685
prokMSA_id:5473 Z11684 Bartonella henselae str. BA-TF
prokMSA_id:5475 Z70005 Bartonella sp. str. R-phy1
prokMSA_id:5476 X89208 Bartonella clarridgeiae str. Houston-2 cat ATCC 51734
prokMSA_id:5478 U64691 Bartonella sp. str. 94-F40
prokMSA_id:5481 AJ003070 Bartonella tribocorum str. IBS 506 CIP 105476
prokMSA_id:5482 AF070463 Bartonella NVH1 str. nvh1
prokMSA_id:5483 Z70008 Bartonella sp. str. C5rat
prokMSA_id:5486 X89110 Wolbachia melophagi str. MO6
prokMSA_id:5489 AJ223778 Bartonella henselae str. FR96/BK3
prokMSA_id:5490 AJ223779 Bartonella henselae str. FR96/BK38
prokMSA_id:5491 AJ223780 Bartonella henselae str. FR97/K7
prokMSA_id:5493 AF076237 Bartonella koehlerae str. C-29 ATCC 700693
prokMSA_id:5496 L01259 Bartonella vinsonii subsp. vinsonii str. Baker ATCC VR-152
prokMSA_id:5498 Z70006 Bartonella sp. str. C1phy
prokMSA_id:5499 Z70007 Bartonella sp. str. C4phy
prokMSA_id:5500 Z70002 Bartonella sp. str. N40
prokMSA_id:5501 Z70001 Bartonella sp. str. R-phy2
prokMSA_id:5502 L01260 Bartonella elizabethae str. F9251; B91-002005 ATCC 49927
prokMSA_id:5505 Z31351 Bartonella doshiae str. R18 NCTC 12862
prokMSA_id:16730 AF291746 Bartonella sp. 99-BO1 
prokMSA_id:16865 AJ299444 Bartonella clarridgeiae strain Ber-K185
prokMSA_id:25328 AF293390 Bartonella sp. IBS 206 
prokMSA_id:25998 AJ278187 Bartonella schoenbuchii strain R1
prokMSA_id:26508 AJ278188 Bartonella schoenbuchii strain R3
prokMSA_id:27653 AF293391 Bartonella sp. 91-4 
prokMSA_id:33033 AJ278190 Bartonella schoenbuchii strain R6
prokMSA_id:42409 AF199502 Bartonella sp. FC7049UT 
prokMSA_id:46747 AF204274 Bartonella birtlesii 
prokMSA_id:49049 AF293389 Bartonella capreoli 
prokMSA_id:49054 AJ278189 Bartonella schoenbuchii strain R4
prokMSA_id:52831 AF214556 Bartonella henselae 
prokMSA_id:53421 AF143446 Bartonella vinsonii subsp. berkhoffii ; -23S intergenic spac
prokMSA_id:74316 Z69039 Bartonella sp
2.28.1.6.27.42566 OTU 2 seqs
prokMSA_id:5466 Z31352 Bartonella vinsonii subsp. vinsonii str. Baker ATCC VR-152
prokMSA_id:5495 M73228 Bartonella quintana str. Fuller ATCC VR-358
2.28.1.6.27.42630 OTU 3 seqs
prokMSA_id:5485 M73230 Bartonella vinsonii subsp. vinsonii str. Baker ATCC VR-152
prokMSA_id:5487 M73229 Bartonella henselae str. Houston-1
prokMSA_id:5492 U87831 clone v9
2.28.1.6.99 VARIOUS 147 seqs
2.28.1.6.99.30636 OTU 2 seqs
prokMSA_id:60623 AF406553 alpha clone AEGEAN_248 
prokMSA_id:60657 AF406515 alpha clone AEGEAN_187 
2.28.1.6.99.38006 OTU 34 seqs
prokMSA_id:5122 X67230 Mesorhizobium loti str. 3F6g2 LMG 4284
prokMSA_id:5124 Z94817 Mesorhizobium genosp. S str. BDV5911
prokMSA_id:5125 U50167 Rhizobium CJ2 str. CJ2 S188 USDA 3440
prokMSA_id:5127 U07934 Mesorhizobium ciceri str. UPM-Ca7 ATCC 51585
prokMSA_id:5129 AF178962 str. WSM1284
prokMSA_id:5131 AF178964 str. WSM1497
prokMSA_id:5132 U50168 Rhizobium CJ5 str. CJ5 24N USDA 3398
prokMSA_id:5146 AF041447 Mesorhizobium tianshanense str. A-1BS USDA 3592
prokMSA_id:5149 D14511 Rhizobium sp. str. TAL1148
prokMSA_id:5151 X67229 Mesorhizobium loti LMG 6125
prokMSA_id:5152 AF041445 Mesorhizobium HL56 str. HL56
prokMSA_id:5153 U50164 Mesorhizobium loti str. R8CS USDA 3467
prokMSA_id:5154 U50165 Mesorhizobium loti str. R88b USDA 3462
prokMSA_id:5155 Y10175 Rhizobium sp. str. CIAM 1414
prokMSA_id:5157 L38825 Mesorhizobium mediterraneum str. UPM-Ca36
prokMSA_id:18788 AJ271898 Mesorhizobium amorphae strain rob6
prokMSA_id:18809 AF410896 Mesorhizobium sp. Lo9-4 
prokMSA_id:22176 AF282926 Mesorhizobium sp. N33 
prokMSA_id:24617 AF479641 Mesorhizobium sp. Lc3-2 
prokMSA_id:30025 AF282927 Mesorhizobium sp. N39 
prokMSA_id:37829 AF282922 Mesorhizobium sp. N1 
prokMSA_id:39417 AF282925 Mesorhizobium sp. N20 
prokMSA_id:41882 AF282929 Mesorhizobium sp. USDA 4003 
prokMSA_id:42551 AF282923 Mesorhizobium sp. N31 
prokMSA_id:45557 AJ271899 Mesorhizobium amorphae strain rob8
prokMSA_id:48243 AJ295081 Mesorhizobium sp. ORS1259 strain ORS1259 LMG 15324
prokMSA_id:50854 AF410895 Mesorhizobium sp. Lo5-9 
prokMSA_id:57886 AY141984 Mesorhizobium sp. SH267neu 
prokMSA_id:57887 AY141983 Mesorhizobium sp. SH2851 
prokMSA_id:62975 AF526933 Rhizobium sp. clone 84-5 rrn 
prokMSA_id:81730 AY195846 Mesorhizobium tianshanense 
prokMSA_id:81838 AY195844 Mesorhizobium mediterraneum strain PECA20 
prokMSA_id:81855 AY206686 Mesorhizobium ciceri strain C-2/2 
prokMSA_id:82201 AY195843 Mesorhizobium mediterraneum strain PECA03 
2.28.1.6.99.39417 OTU 46 seqs
prokMSA_id:4943 X70402 Bradyrhizobium sp. LMG 9520
prokMSA_id:4945 X70403 Bradyrhizobium sp. LMG 9966
prokMSA_id:4946 U35000 Bradyrhizobium elkanii
prokMSA_id:4947 X70404 Bradyrhizobium sp. LMG 9980
prokMSA_id:4949 D89027 str. HW13
prokMSA_id:4961 X70405 Bradyrhizobium sp. LMG 10689
prokMSA_id:4962 U87762 Afipia genosp. 1 str. G6457
prokMSA_id:4977 D89029 str. BTH
prokMSA_id:5045 AF041446 Bradyrhizobium 'SH 283012' str. SH 283012
prokMSA_id:5171 D12786 Mycoplana dimorpha IAM 13154
prokMSA_id:5209 X68388 Sinorhizobium terangae LMG 7834
prokMSA_id:5249 X68387 Sinorhizobium teranga LMG 6463
prokMSA_id:16523 AF363152 Bradyrhizobium elkanii strain USDA 94 
prokMSA_id:17685 AB070561 Bradyrhizobium elkanii strain:NA6167
prokMSA_id:17724 AF321215 Bradyrhizobium sp. strain Cj3-3 
prokMSA_id:21176 AF417554 Bradyrhizobium elkanii strain DASA37005 
prokMSA_id:25796 AF384135 Bradyrhizobium sp. Ppar1-21 
prokMSA_id:30810 AF239845 Bradyrhizobium elkanii PRY49 complete 
prokMSA_id:31000 AF384136 Bradyrhizobium sp. Ppar1-31 
prokMSA_id:31992 AY039303 Bradyrhizobium sp. 5F3 
prokMSA_id:33324 AF417050 Bradyrhizobium sp. bfs1b 
prokMSA_id:35242 AF239846 Bradyrhizobium elkanii PRY52 complete 
prokMSA_id:35940 AF237422 Bradyrhizobium elkanii strain SEMIA 5019 complete 
prokMSA_id:36853 AB035490 Alpha 12A 
prokMSA_id:37053 AF417051 Bradyrhizobium sp. aeky10 
prokMSA_id:39071 AF234890 Bradyrhizobium elkanii strain SEMIA 587 complete 
prokMSA_id:48285 AB035489 Alpha RD5-C2 
prokMSA_id:49293 AB067729 Bradyrhizobium YB2 
prokMSA_id:55508 AB079725 Bradyrhizobium sp. DASA 35082 
prokMSA_id:55735 AF208516 Bradyrhizobium elkanii strain USDA 46 ; tRNA-Ile and tRNA-Al
prokMSA_id:55820 AF293374 Bradyrhizobium elkanii strain USDA 121 ; tRNA-Ile and tRNA-A
prokMSA_id:56108 AF514700 Bradyrhizobium sp. jws91-2 
prokMSA_id:56364 AY039017 Bradyrhizobium sp. ORS 3262 
prokMSA_id:56585 AB072423 Bradyrhizobium elkanii isolate:NA6605
prokMSA_id:59954 AF509906 Bradyrhizobium sp. KKI14 complete 
prokMSA_id:64297 AY039016 Bradyrhizobium sp. ORS 3260 
prokMSA_id:65317 AF514705 Bradyrhizobium sp. Dr3b-11 
prokMSA_id:65351 AF514701 Bradyrhizobium sp. aeky3 
prokMSA_id:67700 AB072421 Bradyrhizobium elkanii isolate:NA6377
prokMSA_id:67701 AB072422 Bradyrhizobium elkanii isolate:NA6265
prokMSA_id:68819 AF293380 Bradyrhizobium elkanii strain USDA 90 ; tRNA-Ile and tRNA-Al
prokMSA_id:68820 AF293379 Bradyrhizobium elkanii strain USDA 86 ; tRNA-Ile and tRNA-Al
prokMSA_id:70012 U35000 Bradyrhizobium elkanii ; tRNA-Ile and tRNA-Ala genes complet
prokMSA_id:70194 AF208510 Bradyrhizobium elkanii strain USDA 130 ; tRNA-Ile and tRNA-A
prokMSA_id:71225 AJ295075 Sinorhizobium terangae strain ORS1254 LMG 15319
prokMSA_id:81433 AF514796 Bradyrhizobium sp. ORS204 
2.28.1.6.99.42181 OTU 47 seqs
prokMSA_id:5299 U28916 Rhizobium etli CFN 42
prokMSA_id:5301 U47303 Rhizobium etli str. SEMIA 0430 USDA 2667
prokMSA_id:5302 U86343 Rhizobium gallicum str. R602sp
prokMSA_id:5304 U89816 Rhizobium mongolense USDA 1832
prokMSA_id:5305 U89818 Rhizobium mongolense USDA 1834
prokMSA_id:5306 U89819 Rhizobium mongolense USDA 1836
prokMSA_id:5309 AF003375 Rhizobium SH22623 str. SH22623
prokMSA_id:5316 U28939 Rhizobium etli str. TAL 182 USDA 9041
prokMSA_id:5320 U89817 Rhizobium mongolense USDA 1844
prokMSA_id:5322 U89822 Rhizobium mongolense USDA 1929
prokMSA_id:5325 D14513 Rhizobium leguminosarum IAM 12609
prokMSA_id:5352 X67227 Rhizobium leguminosarum LMG 8820 alpha purple
prokMSA_id:5353 U73208 Rhizobium leguminosarum str. Rlt E11
prokMSA_id:5354 U73209 Rhizobium leguminosarum str. Rtl E12
prokMSA_id:5358 U89827 Rhizobium leguminosarum USDA 2443
prokMSA_id:5359 U89828 Rhizobium leguminosarum USDA 2449
prokMSA_id:5360 U89829 Rhizobium leguminosarum USDA 2498
prokMSA_id:5361 U89830 Rhizobium leguminosarum USDA 2501
prokMSA_id:5362 AF041443 Rhizobium 'ACCC 19667' ACCC 19667
prokMSA_id:5363 U31074 Rhizobium leguminosarum str. T24
prokMSA_id:18033 AF313906 Rhizobium sp. CIAT652 
prokMSA_id:24023 AF313904 Rhizobium etli strain CIAT151 
prokMSA_id:27225 AY034027 Rhizobium indigoferae 
prokMSA_id:29133 AB079726 Rhizobium sp. PDA-1 
prokMSA_id:31634 AY034026 Rhizobium huanglingense strain CCBAU 7190B 
prokMSA_id:32366 AF313905 Rhizobium sp. CIAT613 
prokMSA_id:37137 AY034029 Rhizobium huanglingense strain CCBAU 7190B 
prokMSA_id:38159 AJ271901 Rhizobium sp. strain rob18
prokMSA_id:38301 AF282924 Mesorhizobium sp. N36 
prokMSA_id:56641 AY161164 Rhizobium etli 
prokMSA_id:61021 AF533683 Rhizobium leguminosarum 
prokMSA_id:73511 AJ318199 alpha clone BIwii1
prokMSA_id:77604 AF364068 Rhizobium indigoferae 
prokMSA_id:79676 AY221179 Rhizobium etli EBRI 27 
prokMSA_id:80573 AY221175 Rhizobium etli EBRI 3 
prokMSA_id:81128 AY210712 Rhizobium sp. Dz6-4 
prokMSA_id:81330 AY210710 Rhizobium sp. Dz12 
prokMSA_id:81359 AY196964 Rhizobium leguminosarum bv. trifolii strain ARPV02 
prokMSA_id:81533 AY210706 Rhizobium sp. Am4-1 
prokMSA_id:81608 AY210708 Rhizobium sp. Db4-14 
prokMSA_id:81629 AY210707 Rhizobium sp. Am4-4 
prokMSA_id:81692 AF514802 Rhizobium sp. ORS217 
prokMSA_id:81786 AY210714 Rhizobium sp. Dz8-2 
prokMSA_id:82038 AY210705 Rhizobium sp. Ak3-1 
prokMSA_id:82148 AY210715 Rhizobium sp. Gi7 
prokMSA_id:82161 AY210704 Rhizobium sp. Ad2 
prokMSA_id:82352 AY210711 Rhizobium sp. Dz6-14 
2.28.1.6.99.42233 OTU 2 seqs
prokMSA_id:42970 AF418953 clone HTD10 
prokMSA_id:47066 AF235998 Alpha A0721 
2.28.1.6.99.42271 OTU 3 seqs
prokMSA_id:63890 AB087719 Rhodopseudomonas rhenobacensis complete 
prokMSA_id:73880 AF257076 Nitrobacter sp
prokMSA_id:77288 AY167839 Chelatococcus asaccharovorans strain SAFR-017 
2.28.1.6.99.42643 OTU 3 seqs
prokMSA_id:5331 U89823 Rhizobium 'USDA 1920' USDA 1920
prokMSA_id:33043 AY048887 Q3-24C12 
prokMSA_id:70205 AF316615 Agrobacterium albertimagni complete 
2.28.1.6.99.42920 OTU 8 seqs
prokMSA_id:5112 D32248 Pseudaminobacter defluvii str. THI051
prokMSA_id:5121 X98419 Nanobacterium sp. str. Seralab FBS batch 901045
prokMSA_id:5464 U71322 Bartonella sp. str. peromysci
prokMSA_id:5467 M11927 Bartonella quintana str. Fuller ATCC VR-358
prokMSA_id:5479 U28268 Bartonella quintana
prokMSA_id:5484 Z70004 Bartonella sp. str. C7rat
prokMSA_id:17437 AF214558 Bartonella vinsonii subsp. arupensis 
prokMSA_id:52696 AJ250247 Bartonella quintana 
2.28.1.6.99.42950 OTU 2 seqs
prokMSA_id:60654 AF406518 alpha clone AEGEAN_167 
prokMSA_id:60655 AF406517 alpha clone AEGEAN_155 
2.28.1.7 CAULOBACTER_GROUP 104 seqs
2.28.1.7.2 PB.IMMOBILE_SUBGROUP 6 seqs
2.28.1.7.2.17775 OTU 1 seq
prokMSA_id:46818 AB076664 Caulobacter sp. H62 
2.28.1.7.2.17759 OTU 1 seq
prokMSA_id:5508 Y18216 Phenylobacterium immobile str. E DSM 1986
2.28.1.7.2.20838 OTU 1 seq
prokMSA_id:77947 AB074623 alpha clone:APe9_7
2.28.1.7.2.30169 OTU 2 seqs
prokMSA_id:5512 AJ227767 Caulobacter sp. str. FWC21
prokMSA_id:21440 AF245033 Caulobacter 5C2 
2.28.1.7.2.9742 OTU 1 seq
prokMSA_id:52287 AF236003 Alpha A0902 
2.28.1.7.3 CAU.VIBRIOIDES_SUBGROUP_II 43 seqs
2.28.1.7.3.14316 OTU 1 seq
prokMSA_id:75785 AJ518769 alpha clone JG37-AG-32
2.28.1.7.3.15663 OTU 1 seq
prokMSA_id:54353 AJ292607 WD297 clone WD297
2.28.1.7.3.16359 OTU 1 seq
prokMSA_id:30983 AJ292595 WD233 clone WD233
2.28.1.7.3.17519 OTU 1 seq
prokMSA_id:55270 D AJ459874 clone
2.28.1.7.3.17884 OTU 1 seq
prokMSA_id:5552 U87785 Afipia genosp. 14 str. G8999
2.28.1.7.3.17886 OTU 1 seq
prokMSA_id:5554 AJ227774 Caulobacter sp. str. FWC38
2.28.1.7.3.30581 OTU 4 seqs
prokMSA_id:5516 AJ227759 Caulobacter fusiformis ATCC 15257
prokMSA_id:5518 AJ007803 Caulobacter fusiformis ATCC 15257
prokMSA_id:5557 AB008533 Caulobacter fusiformis ATCC 15257
prokMSA_id:47991 AJ295490 rape rhizosphere wr0031 
2.28.1.7.3.33614 OTU 31 seqs
prokMSA_id:5523 D13947 Mycoplana segnis IFO 13240
prokMSA_id:5524 AB008531 Caulobacter vibrioides NCIMB 9082
prokMSA_id:5525 AJ227756 Caulobacter crescentus str. CB2 ATCC 15252
prokMSA_id:5526 AJ227761 Caulobacter sp. str. FWC06
prokMSA_id:5527 AJ227762 Caulobacter sp. str. FWC08
prokMSA_id:5528 AJ227763 Caulobacter sp. str. FWC16
prokMSA_id:5529 AJ227764 Caulobacter sp. str. FWC17
prokMSA_id:5530 AJ227765 Caulobacter sp. str. FWC18
prokMSA_id:5531 AJ227768 Caulobacter sp. str. FWC26
prokMSA_id:5532 AJ227769 Caulobacter sp. str. FWC28
prokMSA_id:5533 AJ227770 Caulobacter sp. str. FWC29
prokMSA_id:5534 AJ227771 Caulobacter sp. str. FWC31
prokMSA_id:5535 AJ227772 Caulobacter sp. str. FWC33
prokMSA_id:5536 AJ227773 Caulobacter sp. str. FWC35
prokMSA_id:5537 AJ227775 Caulobacter sp. str. FWC41
prokMSA_id:5538 AJ227776 Caulobacter sp. str. FWC42
prokMSA_id:5539 AJ227777 Caulobacter sp. str. FWC45
prokMSA_id:5540 AJ227754 Caulobacter vibrioides str. CB51 Neotype strain DSM 9893
prokMSA_id:5541 AJ227755 Caulobacter vibrioides ATCC 11764
prokMSA_id:5543 AJ009957 Caulobacter vibrioides str. CB51
prokMSA_id:5544 AB023427 Caulobacter segnis str. MBIC2835
prokMSA_id:5546 AF125194 Caulobacter crescentus str. CB2
prokMSA_id:5548 AJ227760 Caulobacter sp. str. FWC02
prokMSA_id:5551 AJ227758 Caulobacter henricii ATCC 15253
prokMSA_id:5553 AJ227766 Caulobacter sp. str. FWC20
prokMSA_id:5558 AB008532 Caulobacter henricii ATCC 15253
prokMSA_id:5560 AJ007805 Caulobacter henricii ATCC 15253
prokMSA_id:36796 AJ318160 alpha clone BImi11
prokMSA_id:44545 AJ227757 Caulobacter crescentus strain CB15 ATCC 19089
prokMSA_id:47767 AY038618 clone GL182.16 
prokMSA_id:74056 NC_002696 Caulobacter crescentus CB15 complete genome
2.28.1.7.3.42792 OTU 2 seqs
prokMSA_id:46308 AF234717 sludge S7 
prokMSA_id:75034 AJ518763 alpha clone JG37-AG-6
2.28.1.7.4 ASC.EXCENTRICUS_SUBGROUP 6 seqs
2.28.1.7.4.17643 OTU 1 seq
prokMSA_id:17344 AF115501 Asticcacaulis biprosthecium 
2.28.1.7.4.17903 OTU 1 seq
prokMSA_id:5562 AF115499 Asticcacaulis excentricus ATCC 15261
2.28.1.7.4.23597 OTU 2 seqs
prokMSA_id:5563 AB016610 Asticcacaulis excentricus ATCC 15261
prokMSA_id:24445 AJ247194 Asticcacaulis excentricus strain DSM 4724
2.28.1.7.4.23599 OTU 2 seqs
prokMSA_id:5564 AB014055 Asticcacaulis biprosthecium str. MBIC3411 ATCC 27554
prokMSA_id:25580 AJ247193 Asticcacaulis biprosthecium strain DSM 4723
2.28.1.7.5 CAU.SUBVIBRIOIDES_SUBGROUP 49 seqs
2.28.1.7.5.17979 OTU 1 seq
prokMSA_id:5594 D49422 Brevundimonas diminuta IFO 3140
2.28.1.7.5.18489 OTU 1 seq
prokMSA_id:5600 M83810 Caulobacter sp. str. MCS24
2.28.1.7.5.18552 OTU 1 seq
prokMSA_id:5626 AJ007808 Caulobacter variabilis str. CB17 ATCC 15255
2.28.1.7.5.21415 OTU 1 seq
prokMSA_id:49192 AF445713 alpha clone SM2B07 
2.28.1.7.5.22973 OTU 2 seqs
prokMSA_id:5616 AB025196 Caulobacter MBIC3983 str. MBIC3983
prokMSA_id:5621 AJ227799 Brevundimonas MCS17 str. MCS17
2.28.1.7.5.35537 OTU 32 seqs
prokMSA_id:5568 AJ007802 Caulobacter intermedius str. CB63 ACM 2608
prokMSA_id:5571 AB021414 Brevundimonas vesicularis IAM 12105
prokMSA_id:5575 AJ227795 Brevundimonas FWC14 str. FWC14
prokMSA_id:5578 AB023784 Caulobacter intermedius str. CB63 ATCC 15262
prokMSA_id:5581 AJ227787 Brevundimonas aurantiaca str. CB-R DSM 4731
prokMSA_id:5582 AJ227796 Brevundimonas FWC30 str. FWC30
prokMSA_id:5584 AJ227801 Brevundimonas V4.BO.10 str. V4.BO.10
prokMSA_id:5585 AJ227790 Caulobacter sp. str. KA5 DSM 6812
prokMSA_id:5587 AB016846 Caulobacter henricii subsp. aurantiacus ATCC 15266
prokMSA_id:5588 AB016849 str. MBIC3018
prokMSA_id:5589 AB016850 str. MBIC3034
prokMSA_id:5590 AB016851 str. MBIC3032
prokMSA_id:5591 AB016852 str. MBIC3033
prokMSA_id:5592 AB016853 str. MBIC3036
prokMSA_id:5603 AJ007801 Brevundimonas vesicularis ACM 2862
prokMSA_id:5605 AJ227780 Brevundimonas vesicularis LMG 2350
prokMSA_id:5606 AJ222832 str. 4-8
prokMSA_id:5607 AJ001345 unnamed organism
prokMSA_id:5608 AF137356 str. VUN10077
prokMSA_id:5609 AB019037 str. MBIC3965
prokMSA_id:5610 AJ227800 Brevundimonas V4.BO.07 str. V4.BO.07
prokMSA_id:5611 AJ227781 Brevundimonas vesicularis LMG 11141
prokMSA_id:5627 AB008393 Caulobacter subvibrioides subsp. albus ATCC 15265
prokMSA_id:20726 AJ431336 Brevundimonas sp. ikaite c3 isolate ikaite c3
prokMSA_id:46088 AF394174 Blackwater bioreactor BW23 
prokMSA_id:53033 AJ227786 Brevundimonas intermedia strain ATCC 15262
prokMSA_id:63466 AJ495803 Brevundimonas sp. p22P 
prokMSA_id:73480 AJ300773 Brevundimonas sp. LMG 19834 strain LMG 19834
prokMSA_id:75508 AJ534668 alpha clone S15A-MN37
prokMSA_id:78340 AB074604 alpha clone:APe2_20
prokMSA_id:79008 AY177781 Brevundimonas sp
prokMSA_id:82124 AY169433 Brevundimonas vesicularis 
2.28.1.7.5.36691 OTU 10 seqs
prokMSA_id:5567 AB008392 Caulobacter subvibrioides ATCC 15264
prokMSA_id:5615 D12785 Mycoplana bullata IAM 13153
prokMSA_id:5617 AJ227784 Brevundimonas subvibrioides str. CB81 LMG 14903
prokMSA_id:5620 AJ227798 Brevundimonas FWC43 str. FWC43
prokMSA_id:5622 AJ227788 Caulobacter sp. str. CB66 DSM 10556
prokMSA_id:5623 AJ227789 Caulobacter sp. str. CB26 DSM 6811
prokMSA_id:5625 AB023428 Brevundimonas bullata str. MBIC2745
prokMSA_id:5628 AB008514 Caulobacter bacteroides NCIMB 9790
prokMSA_id:31667 AJ295562 rape rhizosphere wr0066 
prokMSA_id:43186 AJ227783 Brevundimonas variabilis strain ATCC 15255 
2.28.1.7.5.5014 OTU 1 seq
prokMSA_id:50466 AF418951 clone HTC6 
2.28.1.8 RHODOBACTER-RHODOVULUM-HYPHOMONAS-RICKETTSIA 638 seqs
2.28.1.8.1 RHODOBACTER_GROUP 283 seqs
2.28.1.8.1.1 ROS.LITORALIS_SUBGROUP 153 seqs
2.28.1.8.1.1.1 ROS.DENITRIFICANS_SUBGROUP 55 seqs
2.28.1.8.1.1.1.10606 OTU 1 seq
prokMSA_id:75251 AJ534235 Staleya sp. LM-10 isolate LM-10
2.28.1.8.1.1.1.11186 OTU 1 seq
prokMSA_id:52404 AF359532 Marine ATAM173a_17 
2.28.1.8.1.1.1.12070 OTU 1 seq
prokMSA_id:45368 AF353235 Roseobacter sp. clone Arctic96A-1 
2.28.1.8.1.1.1.13026 OTU 1 seq
prokMSA_id:61109 AF530151 Alpha MGP-80 
2.28.1.8.1.1.1.13523 OTU 1 seq
prokMSA_id:75623 AJ534233 Staleya sp. LM-7 isolate LM-7
2.28.1.8.1.1.1.15036 OTU 1 seq
prokMSA_id:54244 AF254106 Slope strain DIII4* 
2.28.1.8.1.1.1.15303 OTU 1 seq
prokMSA_id:46473 AF143829 clone 4-Org2-20 
2.28.1.8.1.1.1.1593 OTU 1 seq
prokMSA_id:79547 AF505722 Alpha UMB3C 
2.28.1.8.1.1.1.16798 OTU 1 seq
prokMSA_id:32299 Y16427 Staleya guttiformis strain Ekho Lake-38
2.28.1.8.1.1.1.17691 OTU 1 seq
prokMSA_id:61886 AF449223 alpha clone R103-B28 
2.28.1.8.1.1.1.17689 OTU 1 seq
prokMSA_id:61885 AF449224 alpha clone R103-B9 
2.28.1.8.1.1.1.17719 OTU 1 seq
prokMSA_id:61891 AF449222 alpha clone R103-B61 
2.28.1.8.1.1.1.18400 OTU 1 seq
prokMSA_id:17447 AF305498 Roseobacter sp. KT0202a 
2.28.1.8.1.1.1.18576 OTU 1 seq
prokMSA_id:5631 Y17387 Sulfitobacter mediterraneus str. CH-B427
2.28.1.8.1.1.1.18558 OTU 1 seq
prokMSA_id:5629 U37762 symbiont of Prionitis lanceolata gall
2.28.1.8.1.1.1.18608 OTU 1 seq
prokMSA_id:5648 AF100168 alpha Shippagan 
2.28.1.8.1.1.1.18603 OTU 1 seq
prokMSA_id:5645 AF098494 Roseobacter GAI-109 str. GAI-109
2.28.1.8.1.1.1.20593 OTU 1 seq
prokMSA_id:79185 AB100001 sequences clone: IndB1-58
2.28.1.8.1.1.1.24859 OTU 3 seqs
prokMSA_id:80702 AF468378 Arctic sea ice associated ARK10278 
prokMSA_id:81861 AY167254 Roseobacter sp. ANT909 
prokMSA_id:82225 AY167263 Psychromonas sp. ANT9282b 
2.28.1.8.1.1.1.2687 OTU 1 seq
prokMSA_id:80289 AF468352 Arctic sea ice ARK10013 
2.28.1.8.1.1.1.31734 OTU 2 seqs
prokMSA_id:5649 AF076897 str. B5-6
prokMSA_id:5650 AF076898 str. B5-6
2.28.1.8.1.1.1.38007 OTU 2 seqs
prokMSA_id:5630 AF107210 Roseobacter Prionitis decipiens symbiont
prokMSA_id:39602 AF107209 Roseobacter sp. Prionitis filiformis symbiont 
2.28.1.8.1.1.1.38738 OTU 4 seqs
prokMSA_id:5640 AF098490 Sulfitobacter DSS-2 str. DSS-2
prokMSA_id:5642 U87407 str. S34
prokMSA_id:30176 AF254101 Abyssal strain AIII3 
prokMSA_id:76761 AJ532580 Sulfitobacter sp. BIO-7 isolate BIO-7
2.28.1.8.1.1.1.38842 OTU 2 seqs
prokMSA_id:61128 AF530134 Alpha MGP-7 
prokMSA_id:80429 AF468360 Arctic sea ice ARK10055 
2.28.1.8.1.1.1.39144 OTU 2 seqs
prokMSA_id:79894 AF468274 clone ARKIA-130 
prokMSA_id:81512 AY165584 Arctic sea ice clone ARKXVI/2-130 
2.28.1.8.1.1.1.40363 OTU 2 seqs
prokMSA_id:5651 M96746 Roseobacter denitrificans str. OCh 114
prokMSA_id:5653 L01784 Roseobacter denitrificans str. OCh 114
2.28.1.8.1.1.1.40448 OTU 4 seqs
prokMSA_id:17964 AJ294355 Roseobacter 667-19 isolate 667-19
prokMSA_id:75812 AJ534214 Sulfitobacter sp. DFL-23 isolate DFL-23
prokMSA_id:76561 AJ534241 Sulfitobacter sp. PIC-72 isolate PIC-72
prokMSA_id:76775 AJ534239 Sulfitobacter sp. PIC-69 isolate PIC-69
2.28.1.8.1.1.1.40795 OTU 3 seqs
prokMSA_id:35270 AF245632 Roseobacter NAC11-3 
prokMSA_id:69570 AY145625 alpha clone DC11-80-2 
prokMSA_id:74007 AY145589 alpha clone DC5-80-3 
2.28.1.8.1.1.1.41094 OTU 2 seqs
prokMSA_id:36728 AJ391182 marine alpha AS-21 
prokMSA_id:56667 AY145564 Rhodobacteraceae AP-27 
2.28.1.8.1.1.1.41765 OTU 4 seqs
prokMSA_id:5644 X78312 Roseobacter litoralis ATCC 49566
prokMSA_id:29924 Y16425 Sulfitobacter brevis strain Ekho Lake-162
prokMSA_id:75228 AJ534237 Sulfitobacter sp. LM-16 isolate LM-16
prokMSA_id:78878 AY180103 Sulfitobacter dubium strain KMM 3584 
2.28.1.8.1.1.1.42288 OTU 2 seqs
prokMSA_id:19696 AJ278782 strain R7706
prokMSA_id:76632 AJ534210 Sulfitobacter sp. DFL-10 isolate DFL-10
2.28.1.8.1.1.1.42576 OTU 2 seqs
prokMSA_id:28230 AJ293822 Antarctic seawater R7371 
prokMSA_id:46595 AJ294354 Roseobacter 667-4 isolate 667-4
2.28.1.8.1.1.1.8484 OTU 1 seq
prokMSA_id:80962 AF468354 Arctic sea ice ARK10021 
2.28.1.8.1.1.1.9674 OTU 1 seq
prokMSA_id:82344 AY167260 Roseobacter sp. ANT9270 
2.28.1.8.1.1.2 RG.ALGICOLA_SUBGROUP 46 seqs
2.28.1.8.1.1.2.10620 OTU 1 seq
prokMSA_id:44513 AJ391174 marine alpha AS-11 
2.28.1.8.1.1.2.11381 OTU 1 seq
prokMSA_id:45273 AY005463 Ruegeria sp. MB2 
2.28.1.8.1.1.2.13826 OTU 1 seq
prokMSA_id:61254 AJ505786 alpha isolate PH32
2.28.1.8.1.1.2.13934 OTU 1 seq
prokMSA_id:76304 AJ294335 Alpha HY-103 isolate HY-103
2.28.1.8.1.1.2.14319 OTU 1 seq
prokMSA_id:75789 AF344288 Alpha GL2 
2.28.1.8.1.1.2.15583 OTU 1 seq
prokMSA_id:32029 AF359526 Marine ALUS253_43 
2.28.1.8.1.1.2.18163 OTU 1 seq
prokMSA_id:62509 AF513928 Rhodobacter group clone LA1-B32N 
2.28.1.8.1.1.2.18312 OTU 1 seq
prokMSA_id:55371 AF254109 Hydrothermal vent strain TB66 
2.28.1.8.1.1.2.18351 OTU 1 seq
prokMSA_id:61951 AJ244714 Roseobacter-like sp. V4.ME.23 
2.28.1.8.1.1.2.18674 OTU 1 seq
prokMSA_id:5679 D85831 unnamed organism
2.28.1.8.1.1.2.18633 OTU 1 seq
prokMSA_id:5655 AF098495 Roseobacter ISM str. ISM
2.28.1.8.1.1.2.18655 OTU 1 seq
prokMSA_id:5669 AJ002564 str. SRF2
2.28.1.8.1.1.2.18631 OTU 1 seq
prokMSA_id:5654 Y13244 Roseobacter gallaeciensis str. BS107 CIP 105210
2.28.1.8.1.1.2.18635 OTU 1 seq
prokMSA_id:5657 AF022392 str. 303
2.28.1.8.1.1.2.18636 OTU 1 seq
prokMSA_id:5658 AF170751 Roseobacter QSSC9-8 str. QSSC9-8
2.28.1.8.1.1.2.19620 OTU 1 seq
prokMSA_id:62731 AF507828 alpha clone ML635J-2 
2.28.1.8.1.1.2.2027 OTU 1 seq
prokMSA_id:41631 AY007684 Unknown marine alpha JP88.1 
2.28.1.8.1.1.2.21368 OTU 1 seq
prokMSA_id:79260 AB100002 sequences clone: IndB2-5
2.28.1.8.1.1.2.25501 OTU 3 seqs
prokMSA_id:5666 X78315 Ruegeria algicola str. T-FF3 ATCC 51440
prokMSA_id:5670 X78313 Ruegeria algicola str. ML4 ATCC 51441
prokMSA_id:5671 X78314 Ruegeria algicola str. FF2 ATCC 51442
2.28.1.8.1.1.2.32898 OTU 3 seqs
prokMSA_id:20502 AF359535 Marine ATAM407_56 
prokMSA_id:28150 AJ294353 Roseobacter 667-2 isolate 667-2
prokMSA_id:29429 AY007679 Unknown marine alpha JP7.1 
2.28.1.8.1.1.2.342 OTU 1 seq
prokMSA_id:42048 AF254108 Hydrothermal vent strain AG33 
2.28.1.8.1.1.2.3842 OTU 1 seq
prokMSA_id:79810 AF468376 Arctic sea ice ARK10233 
2.28.1.8.1.1.2.40165 OTU 2 seqs
prokMSA_id:21303 AF253467 Alpha Y3F 
prokMSA_id:27170 AF388307 Marine Y4I 
2.28.1.8.1.1.2.40399 OTU 2 seqs
prokMSA_id:5659 AF026462 Roseobacter J2W
prokMSA_id:5660 AF026463 Roseobacter J8W
2.28.1.8.1.1.2.40444 OTU 2 seqs
prokMSA_id:5662 AF124521 Ruegeria atlantica str. WNA2
prokMSA_id:29620 AF365993 Marine alpha BBAT2 
2.28.1.8.1.1.2.41502 OTU 3 seqs
prokMSA_id:81400 AY167257 Roseobacter sp. ANT9234 
prokMSA_id:81559 AY167261 Roseobacter sp. ANT9274 
prokMSA_id:82275 AY167259 Roseobacter sp. ANT9240 
2.28.1.8.1.1.2.42461 OTU 3 seqs
prokMSA_id:16469 X86467 Roseobacter sp. JLN-A020 strain
prokMSA_id:40286 AJ296158 marine PP-154 
prokMSA_id:42872 AF365992 Marine alpha BBAT1 
2.28.1.8.1.1.2.42666 OTU 2 seqs
prokMSA_id:44060 AF245634 Roseobacter NAC11-6 
prokMSA_id:68973 AY033324 alpha MB11C09 ; tRNA-Ile and tRNA-Ala genes complete ; and 2
2.28.1.8.1.1.2.5450 OTU 1 seq
prokMSA_id:28284 AF254103 Slope strain EI2 
2.28.1.8.1.1.2.6074 OTU 1 seq
prokMSA_id:80690 AF468375 Arctic sea ice ARK10226 
2.28.1.8.1.1.2.6396 OTU 1 seq
prokMSA_id:27774 AF254107 Hydrothermal vent strain NF18 
2.28.1.8.1.1.2.6636 OTU 1 seq
prokMSA_id:81378 AY167339 Roseobacter sp. ARK9990 
2.28.1.8.1.1.2.6660 OTU 1 seq
prokMSA_id:80723 AF468355 Arctic sea ice ARK10026 
2.28.1.8.1.1.2.9254 OTU 1 seq
prokMSA_id:81687 AY165567 Antarctic sea ice clone ANTXI/4_14-43 
2.28.1.8.1.1.3 ANB.HELIOTHERMUS_SUBGROUP 6 seqs
2.28.1.8.1.1.3.11302 OTU 1 seq
prokMSA_id:75332 AJ534207 Methylarcula sp. BIO-24 isolate BIO-24
2.28.1.8.1.1.3.14949 OTU 1 seq
prokMSA_id:75890 AJ534206 Methylarcula sp. BIO-13 isolate BIO-13
2.28.1.8.1.1.3.18686 OTU 1 seq
prokMSA_id:5680 L15345 str. LFR
2.28.1.8.1.1.3.25598 OTU 3 seqs
prokMSA_id:5683 Y11552 Antarctobacter heliothermus str. EL-219 DSM 11440
prokMSA_id:50247 AJ294356 Antarctobacter sp. 667-12 strain 667-12
prokMSA_id:73266 AF359538 Marine ATAM173a_51 
2.28.1.8.1.1.5 OCT.ANTARCTICUS_SUBGROUP 42 seqs
2.28.1.8.1.1.5.11456 OTU 1 seq
prokMSA_id:74722 AJ133762 alpha isolate TH1
2.28.1.8.1.1.5.13824 OTU 1 seq
prokMSA_id:61250 AJ505788 alpha isolate GRP21
2.28.1.8.1.1.5.16678 OTU 1 seq
prokMSA_id:68976 AY033321 Alpha R2A57 ; tRNA-Ala and tRNA-Ile genes complete ; and 23S
2.28.1.8.1.1.5.18161 OTU 1 seq
prokMSA_id:62503 AF513936 Rhodobacter group clone PH-B13 
2.28.1.8.1.1.5.19192 OTU 1 seq
prokMSA_id:5703 AF098493 Roseobacter DSS-8 str. DSS-8
2.28.1.8.1.1.5.19199 OTU 1 seq
prokMSA_id:5707 AB018689 str. MBIC3951
2.28.1.8.1.1.5.19198 OTU 1 seq
prokMSA_id:5706 U63548 unnamed organism
2.28.1.8.1.1.5.19212 OTU 1 seq
prokMSA_id:5715 AF098491 Silicibacter pomeroyi strain DSS-3 
2.28.1.8.1.1.5.19222 OTU 1 seq
prokMSA_id:5719 U77644 Silicibacter lacuscaerulensis str. ITI-1157
2.28.1.8.1.1.5.21953 OTU 1 seq
prokMSA_id:33574 AB046591 Filamentous photosynthetic Fl90-32 
2.28.1.8.1.1.5.23262 OTU 2 seqs
prokMSA_id:5704 AF114484 str. CV919-312
prokMSA_id:5705 AF114485 str. CV1010-362
2.28.1.8.1.1.5.26346 OTU 2 seqs
prokMSA_id:5692 AF098492 Roseobacter DSS-1 str. DSS-1
prokMSA_id:42922 AJ293823 Arctic seawater R7967 
2.28.1.8.1.1.5.29636 OTU 2 seqs
prokMSA_id:26995 AJ295988 Ruegeria aff. gelatinovorans ch611 strain ch611
prokMSA_id:33766 AJ294352 Roseobacter 253-16 isolate 253-16
2.28.1.8.1.1.5.31679 OTU 2 seqs
prokMSA_id:5718 D88527 Agrobacterium meteori IAM 14464
prokMSA_id:49437 AJ244791 Alpha SOGA14 
2.28.1.8.1.1.5.32437 OTU 2 seqs
prokMSA_id:76234 AJ534223 Methylarcula sp. DT-12 isolate DT-12
prokMSA_id:80016 AF468225 clone ARKCH2Br2-100 
2.28.1.8.1.1.5.34482 OTU 2 seqs
prokMSA_id:17537 AJ400341 marine ZD0207 
prokMSA_id:41244 AF245635 Roseobacter NAC11-7 
2.28.1.8.1.1.5.37899 OTU 12 seqs
prokMSA_id:5697 U73725 Octadecabacter arcticus str. 238
prokMSA_id:79813 AF468369 Arctic sea ice ARK10175-1 
prokMSA_id:79937 AF468368 Arctic sea ice associated ARK10126 
prokMSA_id:80122 AF468377 Arctic sea ice ARK10249 
prokMSA_id:80348 AF468361 Arctic sea ice ARK10073 
prokMSA_id:80544 AF468379 Arctic sea ice ARK10285 
prokMSA_id:80710 AF468370 Arctic sea ice ARK10176 
prokMSA_id:80714 AF468364 Arctic sea ice ARK10092 
prokMSA_id:81030 AF468372 Arctic sea ice ARK10197 
prokMSA_id:81431 AY167258 Octadecabacter sp. ANT9237 
prokMSA_id:81453 AY167336 Octadecabacter sp. ANT9191 
prokMSA_id:82065 AY167256 Octadecabacter sp. ANT9232 
2.28.1.8.1.1.5.40160 OTU 4 seqs
prokMSA_id:5716 AB026194 str. MBIC1876
prokMSA_id:43019 AJ244780 Alpha SOGA1 
prokMSA_id:46822 AJ244786 Alpha SOGA8 
prokMSA_id:51444 AJ244802 Alpha SOGA25 
2.28.1.8.1.1.5.41128 OTU 4 seqs
prokMSA_id:5690 U14583 Octadecabacter antarcticus str. 307
prokMSA_id:80968 AF468356 Arctic sea ice ARK10029 
prokMSA_id:81135 AY167335 Octadecabacter sp. ANT9190 
prokMSA_id:82421 AY167252 Octadecabacter sp. ANT9035 
2.28.1.8.1.1.6 ENVIRONMENTAL_CLONE_SAR83 1 seq
2.28.1.8.1.1.6.19236 OTU 1 seq
prokMSA_id:5726 M63810 Sargasso Sea clone SAR 83
2.28.1.8.1.1.99 VARIOUS 3 seqs
2.28.1.8.1.1.99.41354 OTU 3 seqs
prokMSA_id:48599 AJ278783 strain R7091
prokMSA_id:81959 AY167253 Roseobacter sp. ANT9082 
prokMSA_id:82093 AY167321 Roseobacter sp. ANT9283 
2.28.1.8.1.2 PARACOCCUS_SUBGROUP 130 seqs
2.28.1.8.1.2.1 PAR.DENITRIFICANS_SUBGROUP 19 seqs
2.28.1.8.1.2.1.18162 OTU 1 seq
prokMSA_id:62508 AF513929 Rhodobacter group clone LA1-B42N 
2.28.1.8.1.2.1.19261 OTU 1 seq
prokMSA_id:5737 AF030437 Methyloarcula terricola str. h37 VKM B-2160
2.28.1.8.1.2.1.19281 OTU 1 seq
prokMSA_id:5740 AB024613 Paracoccus MBIC1145 str. MBIC1145
2.28.1.8.1.2.1.19311 OTU 1 seq
prokMSA_id:5753 AF140003 str. ML-168a
2.28.1.8.1.2.1.26249 OTU 3 seqs
prokMSA_id:5756 AB018688 Paracoccus sp. str. MBIC3966
prokMSA_id:38672 AF461158 Paracoccus zeaxanthinifaciens strain ATCC 21588 
prokMSA_id:41749 AF461159 Paracoccus zeaxanthinifaciens strain R-1506 
2.28.1.8.1.2.1.36657 OTU 8 seqs
prokMSA_id:5748 Y16928 Paracoccus denitrificans LMD 22.1
prokMSA_id:5751 Y16929 Paracoccus denitrificans DSM 413
prokMSA_id:5752 Y16930 Paracoccus denitrificans ATCC 19367
prokMSA_id:5754 AJ012067 Paracoccus sp. str. B8B1
prokMSA_id:5755 AJ012068 Paracoccus sp. str. B8B2
prokMSA_id:5757 Y16927 Paracoccus denitrificans ATCC 17741
prokMSA_id:47659 AF229874 Paracoccus sp. 4FB8 
prokMSA_id:75763 AY157621 Paracoccus denitrificans isolate NKNIS 
2.28.1.8.1.2.1.42151 OTU 3 seqs
prokMSA_id:62730 AF507829 alpha clone ML602J-43 
prokMSA_id:63841 AF454295 alpha clone ML812M-6 
prokMSA_id:63844 AF454292 alpha clone ML602M-13 
2.28.1.8.1.2.1.9459 OTU 1 seq
prokMSA_id:73883 AJ132383 Natronohydrobacter thiooxidans strain AHO 1
2.28.1.8.1.2.2 PAR.AMINOPHILUS_SUBGROUP 22 seqs
2.28.1.8.1.2.2.1416 OTU 1 seq
prokMSA_id:27188 AB041770 Paracoccus kawasakiensis 
2.28.1.8.1.2.2.17533 OTU 1 seq
prokMSA_id:61839 AF529328 alpha clone CLi24 
2.28.1.8.1.2.2.18350 OTU 1 seq
prokMSA_id:61950 AJ244715 Paracoccus-like sp. V4.BP.10 marine isolate
2.28.1.8.1.2.2.19333 OTU 1 seq
prokMSA_id:5765 AB012914 Paracoccus sp. str. MBIC3345 Y4
2.28.1.8.1.2.2.19337 OTU 1 seq
prokMSA_id:5769 AB025188 Paracoccus MBIC4017 str. MBIC4017
2.28.1.8.1.2.2.19353 OTU 1 seq
prokMSA_id:5770 AB025189 Paracoccus MBIC4018 str. MBIC4018
2.28.1.8.1.2.2.19354 OTU 1 seq
prokMSA_id:5771 AF139992 Paracoccus marcusii str. ML-003
2.28.1.8.1.2.2.19330 OTU 1 seq
prokMSA_id:5762 AF030436 Methyloarcula marina str. h1 VKM B-2159
2.28.1.8.1.2.2.21314 OTU 1 seq
prokMSA_id:32853 AJ428275 Paracoccus seriniphila strain MBT-A4
2.28.1.8.1.2.2.26254 OTU 2 seqs
prokMSA_id:5758 D32239 Paracoccus aminophilus str. DM-15 JCM 7686
prokMSA_id:24498 AY014176 Paracoccus aminophilus 
2.28.1.8.1.2.2.34601 OTU 3 seqs
prokMSA_id:5766 D32238 Paracoccus alcaliphilus str. TK 1015 JCM 7364
prokMSA_id:26524 AJ294415 Paracoccus alcaliphilus strain KTC002
prokMSA_id:38102 AY014177 Paracoccus alcaliphilus 
2.28.1.8.1.2.2.41099 OTU 5 seqs
prokMSA_id:5767 Y12703 Paracoccus marcusii
prokMSA_id:5768 AB006899 Paracoccus carotinifaciens str. E-396
prokMSA_id:5772 AB008114 str. MBIC1143
prokMSA_id:43378 E14335 encoding of E-396 strain
prokMSA_id:76690 AJ532681 alpha clone Gitt-KF-3
2.28.1.8.1.2.2.42051 OTU 2 seqs
prokMSA_id:74886 AJ534231 Methylarcula sp. HEL-8 isolate HEL-8
prokMSA_id:80137 AF468351 Arctic sea ice associated ARK10006 
2.28.1.8.1.2.2.9293 OTU 1 seq
prokMSA_id:44392 AJ315682 Alpha ML6 strain ML6
2.28.1.8.1.2.3 PAR.ALKENIFER_SUBGROUP 5 seqs
2.28.1.8.1.2.3.19361 OTU 1 seq
prokMSA_id:5778 Y13827 Paracoccus alkenifer str. A901/1 DSM 11593
2.28.1.8.1.2.3.19362 OTU 1 seq
prokMSA_id:5779 D32241 Paracoccus kocurii str. B JCM 7684
2.28.1.8.1.2.3.41124 OTU 3 seqs
prokMSA_id:5776 Y07705 Paracoccus solventivorans str. L1 DSM 6637
prokMSA_id:5777 Y13826 Paracoccus solventivorans str. A686/1
prokMSA_id:47316 AY014175 Paracoccus solventivorans 
2.28.1.8.1.2.4 RB.VELDKAMPII_SUBGROUP 3 seqs
2.28.1.8.1.2.4.19380 OTU 1 seq
prokMSA_id:5780 D16421 Rhodobacter veldkampii ATCC 35703
2.28.1.8.1.2.4.19381 OTU 1 seq
prokMSA_id:5781 AF170736 Rhodobacter QSSC1-20 str. QSSC1-20
2.28.1.8.1.2.4.19592 OTU 1 seq
prokMSA_id:56159 AB079681 Rhodobacter sp. AP-10 
2.28.1.8.1.2.5 STR.SW2_SUBGROUP 4 seqs
2.28.1.8.1.2.5.11774 OTU 1 seq
prokMSA_id:66953 AJ440751 Gram-negative MM 1 isolate MM 1
2.28.1.8.1.2.5.19384 OTU 1 seq
prokMSA_id:5784 AJ224988 str. from Lake Gossenkoellesee
2.28.1.8.1.2.5.19383 OTU 1 seq
prokMSA_id:5783 X78717 str. SW2
2.28.1.8.1.2.5.8638 OTU 1 seq
prokMSA_id:59349 AF502217 clone HP1B64 
2.28.1.8.1.2.6 RB.SPHAEROIDES_SUBGROUP 18 seqs
2.28.1.8.1.2.6.1468 OTU 1 seq
prokMSA_id:49413 AF234740 sludge A15b 
2.28.1.8.1.2.6.16396 OTU 1 seq
prokMSA_id:46644 AJ296550 GR-WP33-45 clone GR-WP33-45
2.28.1.8.1.2.6.19401 OTU 1 seq
prokMSA_id:5792 D85834 Rubrimonas cliftonensis str. OCh317
2.28.1.8.1.2.6.19402 OTU 1 seq
prokMSA_id:5793 AF035433 Rhodobacter apigmentum
2.28.1.8.1.2.6.20506 OTU 1 seq
prokMSA_id:48409 AJ296551 GR-Sh1-107 clone GR-Sh1-107
2.28.1.8.1.2.6.33626 OTU 10 seqs
prokMSA_id:5788 D70846 Rhodobacter azotoformans str. KA25
prokMSA_id:5790 D70847 Rhodobacter azotoformans str. SA16
prokMSA_id:5791 X53853 Rhodobacter sphaeroides str. ATH 2.4.1 ATCC 17023 =
prokMSA_id:5795 D16425 Rhodobacter sphaeroides IFO 12203
prokMSA_id:5796 X53855 Rhodobacter sphaeroides str. ATH 2.4.1 ATCC 17023 =rrnC
prokMSA_id:5797 D16424 Rhodobacter sphaeroides str. IL106
prokMSA_id:5798 X53854 Rhodobacter sphaeroides str. ATH 2.4.1 ATCC 17023 =rrnB
prokMSA_id:22866 AF468821 Rhodobacter sphaeroides KCTC 12085 
prokMSA_id:56072 AF515782 Rhodobacter sp. PS9 
prokMSA_id:67718 AB082379 Rhodobacter sp. NMR15 
2.28.1.8.1.2.6.6666 OTU 1 seq
prokMSA_id:80728 AF468358 Arctic sea ice ARK10036 
2.28.1.8.1.2.6.9171 OTU 1 seq
prokMSA_id:21491 AF445668 alpha clone SM1C11 
2.28.1.8.1.2.6.9253 OTU 1 seq
prokMSA_id:81685 AY216456 clone KM72 
2.28.1.8.1.2.7 AMR.MACAUENSIS_SUBGROUP 18 seqs
2.28.1.8.1.2.7.12909 OTU 1 seq
prokMSA_id:67721 AB077986 Rhodobacter gluconicum 
2.28.1.8.1.2.7.18391 OTU 1 seq
prokMSA_id:78270 AJ505840 Alpha A-col-R2A-4 isolate A-col-R2A-4
2.28.1.8.1.2.7.19985 OTU 1 seq
prokMSA_id:5808 U88044 Amaricoccus tamworthensis str. Ben103 ACM 5097
2.28.1.8.1.2.7.19984 OTU 1 seq
prokMSA_id:5807 AB015247 str. JTB359
2.28.1.8.1.2.7.19980 OTU 1 seq
prokMSA_id:5803 D13478 Rhodobacter blasticus NCIMB 11576
2.28.1.8.1.2.7.20007 OTU 1 seq
prokMSA_id:5812 U88043 Amaricoccus veronensis str. Ben102 ACM 5098
2.28.1.8.1.2.7.20006 OTU 1 seq
prokMSA_id:5811 U88042 Amaricoccus macauensis str. Ben104 ACM 5096
2.28.1.8.1.2.7.2009 OTU 1 seq
prokMSA_id:35061 AF108135 'halibut' 
2.28.1.8.1.2.7.20750 OTU 1 seq
prokMSA_id:77913 AJ489269 alpha isolate Osrt
2.28.1.8.1.2.7.29733 OTU 3 seqs
prokMSA_id:5804 U88041 Amaricoccus kaplicensis str. Ben101 ACM 5099
prokMSA_id:5805 Y09609 Tetracoccus cechii str. Italian
prokMSA_id:5806 Y09610 Tetracoccus cechii str. Czech
2.28.1.8.1.2.7.31505 OTU 2 seqs
prokMSA_id:18204 AF234758 sludge A10 
prokMSA_id:49391 AF280854 mle1-20 
2.28.1.8.1.2.7.33694 OTU 2 seqs
prokMSA_id:5800 D16429 Rhodobacter blasticus ATCC 33485
prokMSA_id:5802 AB017799 Rhodobacter TCRI 14 str. TCRI 14
2.28.1.8.1.2.7.5473 OTU 1 seq
prokMSA_id:58379 AF368183 Rhodobacter group clone SBRT155 
2.28.1.8.1.2.7.6237 OTU 1 seq
prokMSA_id:35565 AF234745 sludge A26 
2.28.1.8.1.2.8 RB.CAPSULATUS_SUBGROUP 14 seqs
2.28.1.8.1.2.8.15713 OTU 1 seq
prokMSA_id:17078 AF234729 sludge A27 
2.28.1.8.1.2.8.20034 OTU 1 seq
prokMSA_id:5820 D16428 Rhodobacter capsulatus str. ATH 2.3.1 ATCC 11166
2.28.1.8.1.2.8.20008 OTU 1 seq
prokMSA_id:5814 M60671 Rhodobacter capsulatus str. B10 ATCC 33303
2.28.1.8.1.2.8.20547 OTU 1 seq
prokMSA_id:62868 AF452106 Cf. Rhodobacter sp. Framboise 
2.28.1.8.1.2.8.33055 OTU 4 seqs
prokMSA_id:5815 D16427 Rhodobacter capsulatus str. C5
prokMSA_id:5816 AB017796 Rhodobacter TCRI 3 str. TCRI 3
prokMSA_id:5817 AB017797 Rhodobacter TCRI 5 str. TCRI 5
prokMSA_id:5818 AB017798 Rhodobacter TCRI str. TCRI 2
2.28.1.8.1.2.8.33414 OTU 2 seqs
prokMSA_id:59350 AF502215 clone HP1B71 
prokMSA_id:59351 AF502214 clone HP1A30 
2.28.1.8.1.2.8.35390 OTU 3 seqs
prokMSA_id:22427 AF234741 sludge A6 
prokMSA_id:34114 AF234715 sludge H42 
prokMSA_id:40921 AF234725 sludge S2 
2.28.1.8.1.2.8.8637 OTU 1 seq
prokMSA_id:59348 AF502216 clone HP1B39 
2.28.1.8.1.2.99 VARIOUS 27 seqs
2.28.1.8.1.2.99.35464 OTU 19 seqs
prokMSA_id:5729 Y16932 Paracoccus versutus ATCC 25364
prokMSA_id:5730 Y16931 Paracoccus versutus DSM 582
prokMSA_id:5731 D32243 Paracoccus versutus IAM 12814
prokMSA_id:5732 D32244 Paracoccus versutus IAM 12815
prokMSA_id:5735 X69159 Paracoccus denitrificans LMG 4218
prokMSA_id:5738 Y16933 Paracoccus pantotrophus ATCC 35512
prokMSA_id:5741 Y16934 Paracoccus pantotrophus LMD 92.63
prokMSA_id:5742 Y17511 Paracoccus denitrificans JCM 6892
prokMSA_id:5743 Y17512 Paracoccus denitrificans IAM 12479
prokMSA_id:5744 U58015 Paracoccus KS1
prokMSA_id:5745 U58016 Paracoccus KS2
prokMSA_id:5746 U58017 Paracoccus KL1
prokMSA_id:5747 Y16935 Paracoccus denitrificans DSM 65
prokMSA_id:5761 D32240 Paracoccus aminovorans str. DM-82 JCM 7685
prokMSA_id:19177 Y16936 Paracoccus pantotrophus strain LMG 4218
prokMSA_id:21865 AY014174 Paracoccus versutus 
prokMSA_id:34219 AJ294414 Paracoccus thiophilus strain AS001
prokMSA_id:34943 AJ288159 Paracoccus denitrificans strain DSM 2944
prokMSA_id:77660 AB098590 Paracoccus pantotrophus 
2.28.1.8.1.2.99.40944 OTU 8 seqs
prokMSA_id:22206 AY014173 Paracoccus yeeii strain G1212 
prokMSA_id:23110 AY014168 Paracoccus yeeii strain G4878 
prokMSA_id:26594 AY014172 Paracoccus yeeii strain G9205 
prokMSA_id:28217 AY014169 Paracoccus yeeii strain G6446 
prokMSA_id:33902 AY014178 Paracoccus yeeii strain H13 
prokMSA_id:44012 AY014170 Paracoccus yeeii strain G6155 
prokMSA_id:46743 AY014179 Paracoccus yeeii strain G3060 
prokMSA_id:52386 AY014171 Paracoccus yeeii strain G1968 
2.28.1.8.2 RHODOVULUM_GROUP 27 seqs
2.28.1.8.2.1 RHV.ADRIATICUM_SUBGROUP 6 seqs
2.28.1.8.2.1.20035 OTU 1 seq
prokMSA_id:5822 Y15012 Rhodovulum robiginosum str. N2
2.28.1.8.2.1.34951 OTU 4 seqs
prokMSA_id:5823 D32245 Rhodovulum sp. str. MB253
prokMSA_id:5825 D16418 Rhodovulum adriaticum DSM 2781
prokMSA_id:60395 AF513442 Rhodobacter group LA38BS 
prokMSA_id:77962 AJ401206 Rhodovulum sp. AT2111 
2.28.1.8.2.1.6969 OTU 1 seq
prokMSA_id:35622 AF359530 Marine ATAM407_62 
2.28.1.8.2.2 RHV.SULFIDOPHILUM_SUBGROUP 21 seqs
2.28.1.8.2.2.10395 OTU 1 seq
prokMSA_id:60184 AJ347025 clone TK03
2.28.1.8.2.2.11857 OTU 1 seq
prokMSA_id:60360 AF465833 Rhodovulum inexpectatum strain FRR-10T 
2.28.1.8.2.2.16731 OTU 1 seq
prokMSA_id:62332 AB079682 Rhodovulum sp. CP-10 
2.28.1.8.2.2.16737 OTU 1 seq
prokMSA_id:62339 AB079635 Rhodovulum strictum 
2.28.1.8.2.2.18865 OTU 1 seq
prokMSA_id:33175 AF355035 alpha Arctic96B-9 
2.28.1.8.2.2.20040 OTU 1 seq
prokMSA_id:5828 D16426 Rhodovulum euryhalinum str. KA-65 DSM 4868
2.28.1.8.2.2.20038 OTU 1 seq
prokMSA_id:5826 Y15011 Rhodovulum iodosum str. N1
2.28.1.8.2.2.20060 OTU 1 seq
prokMSA_id:5830 D16419 Rhodovulum strictum str. MB-G2
2.28.1.8.2.2.20069 OTU 1 seq
prokMSA_id:5839 AB015526 str. BD1-17
2.28.1.8.2.2.20486 OTU 1 seq
prokMSA_id:79141 AF382105 clone ZA2526c 
2.28.1.8.2.2.35321 OTU 10 seqs
prokMSA_id:5831 D16422 Rhodovulum sulfidophilum str. TW13
prokMSA_id:5832 D16423 Rhodovulum sulfidophilum str. W4 DSM 1374
prokMSA_id:5834 D16422 Rhodovulum sulfidophilum str. TW13
prokMSA_id:5835 U55277 Rhodovulum sulfidophilum str. W-1S FERM P-15320
prokMSA_id:5836 D16430 Rhodovulum sulfidophilum str. W12 DSM 2351
prokMSA_id:5838 D32246 Rhodovulum sp. str. MB263
prokMSA_id:5840 D16420 Rhodovulum sp. str. MB260
prokMSA_id:60362 AF513477 Rhodobacter group PH33 
prokMSA_id:73644 D16423 R. sulfidophilum 
prokMSA_id:78323 AJ401214 Rhodovulum sp. AR2102 
2.28.1.8.2.2.8102 OTU 1 seq
prokMSA_id:82177 AY214344 Rhodovulum sp. A_wp02224 
2.28.1.8.3 HYPHOMONAS_GROUP 32 seqs
2.28.1.8.3.1 CAU.HALOBACTEROIDES_SUBGROUP 17 seqs
2.28.1.8.3.1.11903 OTU 1 seq
prokMSA_id:60393 AF513444 Hyphomonas group LA49 
2.28.1.8.3.1.13102 OTU 1 seq
prokMSA_id:61139 AF530128 Alpha MGP-1 
2.28.1.8.3.1.18908 OTU 1 seq
prokMSA_id:63287 AF523932 clone RCP1-39 
2.28.1.8.3.1.27830 OTU 2 seqs
prokMSA_id:5850 AJ227804 Maricaulis MCS06 str. MCS06
prokMSA_id:5852 AJ227806 Maricaulis MCS18 str. MCS18
2.28.1.8.3.1.31788 OTU 3 seqs
prokMSA_id:5853 AJ227808 Maricaulis sp. strain MCS25
prokMSA_id:5854 AJ227809 Maricaulis sp. strain MCS26
prokMSA_id:26948 AJ301667 Maricaulis virginensis strain VC5
2.28.1.8.3.1.31855 OTU 9 seqs
prokMSA_id:5841 AJ007807 Caulobacter maris ATCC 15268
prokMSA_id:5845 AJ007804 Caulobacter halobacteroides ATCC 15269
prokMSA_id:5851 AJ227805 Maricaulis MCS11 str. MCS11
prokMSA_id:5855 AJ227810 Maricaulis MCS28 str. MCS28
prokMSA_id:27292 AJ301666 Maricaulis sp. MCS31 strain MCS31
prokMSA_id:32951 AJ301665 Maricaulis sp. MCS30 strain MCS30
prokMSA_id:33484 AJ227803 Maricaulis maris strain ATCC 15269
prokMSA_id:49200 AJ227802 Maricaulis maris strain ATCC 15268 
prokMSA_id:49396 AJ301664 Maricaulis sp. MCS10 strain MCS10
2.28.1.8.3.2 HYM.JANNASCHIANA_SUBGROUP 15 seqs
2.28.1.8.3.2.14238 OTU 1 seq
prokMSA_id:45671 AF359546 Marine SCRIPPS_739 
2.28.1.8.3.2.18810 OTU 1 seq
prokMSA_id:40367 AF445717 alpha clone SM2C07 
2.28.1.8.3.2.20122 OTU 1 seq
prokMSA_id:5863 AJ227807 Caulobacter MCS23 str. MCS23
2.28.1.8.3.2.20127 OTU 1 seq
prokMSA_id:5867 AF082791 Hyphomonas johnsonii str. MHS-2
2.28.1.8.3.2.20123 OTU 1 seq
prokMSA_id:5864 AJ227813 Hyphomonas polymorpha DSM 2665
2.28.1.8.3.2.20147 OTU 1 seq
prokMSA_id:5871 AF082796 Hyphomonas polymorpha str. Pr-727
2.28.1.8.3.2.32243 OTU 5 seqs
prokMSA_id:5860 AF082789 Hyphomonas jannaschiana str. VP-2 DSM 5153
prokMSA_id:5865 AJ227814 Hyphomonas jannaschiana str. VP-2 ATCC 33883
prokMSA_id:5866 AF082790 Hyphomonas adhaerens str. MHS-3
prokMSA_id:5872 AF082799 Hyphomonas jannaschiana str. VP-1
prokMSA_id:81308 AY216440 clone KM82 
2.28.1.8.3.2.42022 OTU 3 seqs
prokMSA_id:5870 AF082795 Hyphomonas rosenbergii str. VP-6
prokMSA_id:5876 AF082794 Hyphomonas hirschiana str. VP-5 DSM 5152
prokMSA_id:5877 AF082798 Hyphomonas neptunium str. LE670 IFAM LE670
2.28.1.8.3.2.6754 OTU 1 seq
prokMSA_id:43442 AJ421782 Hirschia baltica strain DSM 5838T
2.28.1.8.4 ENVIRONMENTAL_CLONE_SAR102 1 seq
2.28.1.8.4.20170 OTU 1 seq
prokMSA_id:5882 L35460 Sargasso Sea clone SAR 102
2.28.1.8.5 RICKETTSIA_AND_OTHERS 290 seqs
2.28.1.8.5.3 ENVIRONMENTAL_CLONE_PLY43_SUBGROUP 38 seqs
2.28.1.8.5.3.13877 OTU 1 seq
prokMSA_id:60628 AF406547 alpha clone AEGEAN_233 
2.28.1.8.5.3.15630 OTU 1 seq
prokMSA_id:31458 AF353224 alpha clone Arctic96B-6 
2.28.1.8.5.3.16261 OTU 1 seq
prokMSA_id:24388 AF353212 alpha clone Arctic96AD-8 
2.28.1.8.5.3.16677 OTU 1 seq
prokMSA_id:68975 AY033322 alpha MB21A02 ; tRNA-Ile and tRNA-Ala genes complete ; and 2
2.28.1.8.5.3.16693 OTU 1 seq
prokMSA_id:68982 AY033312 alpha MB12A07 ; tRNA-Ile and tRNA-Ala genes complete ; and 2
2.28.1.8.5.3.20189 OTU 1 seq
prokMSA_id:5897 U70686 clone OM155
2.28.1.8.5.3.20844 OTU 1 seq
prokMSA_id:5900 U75254 clone SAR464
2.28.1.8.5.3.20848 OTU 1 seq
prokMSA_id:5904 U75258 clone SAR241
2.28.1.8.5.3.20847 OTU 1 seq
prokMSA_id:5903 U75257 clone SAR220
2.28.1.8.5.3.20846 OTU 1 seq
prokMSA_id:5902 U75256 clone SAR211
2.28.1.8.5.3.20845 OTU 1 seq
prokMSA_id:5901 U75255 clone SAR203
2.28.1.8.5.3.33118 OTU 5 seqs
prokMSA_id:36382 AJ400351 marine ZD0410 
prokMSA_id:48485 AF353214 alpha clone Arctic95B-1 
prokMSA_id:63102 AY093481 clone MB-C2-128 
prokMSA_id:68988 AY033303 alpha MB11D08 ; tRNA-Ile and tRNA-Ala genes complete ; and 2
prokMSA_id:68990 AY033299 alpha MB11B07 ; tRNA-Ile and tRNA-Ala genes complete ; and 2
2.28.1.8.5.3.35040 OTU 17 seqs
prokMSA_id:5889 U13159 clone PLY43
prokMSA_id:5908 L10935 clone FL11
prokMSA_id:21462 AF245616 alpha NAC1-3 
prokMSA_id:23331 AF353227 alpha clone Arctic95A-16 
prokMSA_id:33310 AF353211 alpha clone Arctic96B-10 
prokMSA_id:33797 AF353208 alpha clone Arctic96A-20 
prokMSA_id:40239 AF327027 coastal Alaskan Arctic AWS98-19a 
prokMSA_id:40986 AF353209 alpha clone Arctic96B-3 
prokMSA_id:43576 AF353210 alpha clone Arctic97C-1 
prokMSA_id:55658 AF268220 EBAC40E09 ; and tRNA-Ile and tRNA-Ala genes complete 
prokMSA_id:61204 AF510192 Pelagibacter ubique strain HTCC1002 ; -23S intergenic spacer
prokMSA_id:61205 AF510191 Pelagibacter ubique strain HTCC1062 ; -23S intergenic spacer
prokMSA_id:68977 AY033320 alpha MB13H04 ; tRNA-Ile and tRNA-Ala genes complete ; and 2
prokMSA_id:68983 AY033309 alpha MB11F01 ; tRNA-Ile and tRNA-Ala genes complete ; and 2
prokMSA_id:68985 AY033306 alpha MB11E07 ; tRNA-Ile and tRNA-Ala genes complete ; and 2
prokMSA_id:71838 AJ400350 marine ZD0409 
prokMSA_id:79390 AF382134 clone ZA3320c 
2.28.1.8.5.3.42061 OTU 3 seqs
prokMSA_id:5898 U75649 clone SAR193
prokMSA_id:38403 AF353225 alpha clone Arctic97B-5 
prokMSA_id:79196 AF382131 clone ZA3911c 
2.28.1.8.5.3.42751 OTU 2 seqs
prokMSA_id:22763 AF353223 alpha clone Arctic95D-8 
prokMSA_id:52749 AF353215 alpha clone Arctic95C-7 
2.28.1.8.5.4 HOLOSPORA_SUBGROUP 7 seqs
2.28.1.8.5.4.12155 OTU 1 seq
prokMSA_id:44738 AF292999 Green Bay ferromanganous micronodule MND8 
2.28.1.8.5.4.18340 OTU 1 seq
prokMSA_id:78256 AB089086 alpha clone:Rs-M08
2.28.1.8.5.4.19377 OTU 1 seq
prokMSA_id:40401 AF132139 Endosymbiont of Acanthamoeba sp. UWET39 
2.28.1.8.5.4.20869 OTU 1 seq
prokMSA_id:5918 X71837 Caedibacter caryophila str. 221
2.28.1.8.5.4.20887 OTU 1 seq
prokMSA_id:5921 U65509 unnamed organism
2.28.1.8.5.4.2124 OTU 1 seq
prokMSA_id:64551 AY102614 Endosymbiont of Acanthamoeba sp. TUMK-23 
2.28.1.8.5.4.6557 OTU 1 seq
prokMSA_id:74136 AJ428412 alpha clone 10B6
2.28.1.8.5.5 RICKETTSIA_SUBGROUP 76 seqs
2.28.1.8.5.5.19164 OTU 1 seq
prokMSA_id:78393 AB089097 alpha clone:Rs-M62
2.28.1.8.5.5.19520 OTU 1 seq
prokMSA_id:63333 AF523878 clone RCP2-17 
2.28.1.8.5.5.20784 OTU 1 seq
prokMSA_id:77922 AB089084 alpha clone:Rs-B60
2.28.1.8.5.5.20891 OTU 1 seq
prokMSA_id:5924 M21789 Rickettsia prowazekii str. Breinl ATCC VR-142 alpha purple
2.28.1.8.5.5.20965 OTU 1 seq
prokMSA_id:5952 AB021128 Rickettsia sp
2.28.1.8.5.5.20936 OTU 1 seq
prokMSA_id:5942 AB015522 str. BD1-10
2.28.1.8.5.5.20986 OTU 1 seq
prokMSA_id:5960 M20499 Rickettsia typhi str. Wilmington
2.28.1.8.5.5.32730 OTU 2 seqs
prokMSA_id:39764 AB066352 Rickettsia endosymbiont of Hemicrepsis marginata 
prokMSA_id:52394 AB066351 Rickettsia endosymbiont of Torix tagoi 
2.28.1.8.5.5.34476 OTU 2 seqs
prokMSA_id:5951 AF069962 unnamed organism
prokMSA_id:5966 AF069963 unnamed organism
2.28.1.8.5.5.39764 OTU 52 seqs
prokMSA_id:5922 U04163 Rickettsia sp
prokMSA_id:5923 L36101 Rickettsia australis str. Phillips
prokMSA_id:5925 U12460 Rickettsia conorii str. IIT-586
prokMSA_id:5926 L36098 Rickettsia africae str. ESF-5; Z9-Hu
prokMSA_id:5927 S. U25042 Rickettsia sp. str
prokMSA_id:5928 L36102 Rickettsia sp. str. Bar 29
prokMSA_id:5929 D84558 Rickettsia sp
prokMSA_id:5930 U74757 Rickettsia aeschlimanni str. Mc16
prokMSA_id:5931 L36218 Rickettsia sibirica str. 246
prokMSA_id:5934 L36224 Rickettsia slovaca str. 13-B
prokMSA_id:5935 U11016 Rickettsia montana str. Ohio 83-441
prokMSA_id:5936 L36100 Rickettsia sp. str. A-167
prokMSA_id:5937 L36107 Rickettsia conorii str. Indian Tick Typhus rickettsia
prokMSA_id:5938 L36212 Rickettsia helvetica str. C9P9
prokMSA_id:5940 U11012 Rickettsia amblyommii str. MO 85-1084
prokMSA_id:5945 L36223 Rickettsia sp. str. ISTT CDC1
prokMSA_id:5946 L36214 Rickettsia massiliae str. Mtu1
prokMSA_id:5947 U17644 Rickettsia australis str. RHS
prokMSA_id:5948 L36213 Rickettsia japonica str. YM
prokMSA_id:5950 U11014 Rickettsia bellii str. strains 369-C and G2D42
prokMSA_id:5953 U12461 Rickettsia parkeri str. Maculatum 20
prokMSA_id:5954 U11021 Rickettsia rickettsii str. Sawtooth
prokMSA_id:5956 U12462 Rickettsia sibirica str. 246
prokMSA_id:5957 L36220 Rickettsia sp. str. TT-118
prokMSA_id:5958 AF060705 Rickettsia honei str. RB
prokMSA_id:5959 U12459 Rickettsia australis str. Phillips
prokMSA_id:5961 L36103 Rickettsia bellii str. 369L42-1
prokMSA_id:5962 U76910 Rickettsia sp. str. Puerto Rico
prokMSA_id:5963 U17645 Rickettsia honei str. JC
prokMSA_id:5964 L28944 Rickettsia sp. str. ELB agent
prokMSA_id:5965 L36106 Rickettsia massiliae str. GS
prokMSA_id:5967 L36217 Rickettsia rickettsii str. R Bitterroot
prokMSA_id:5970 L36216 Rickettsia rhipicephali str. 3-7-6
prokMSA_id:5971 L36105 Rickettsia conorii str. Moroccan
prokMSA_id:5972 L36219 Rickettsia sp. str. HA-91
prokMSA_id:5973 L36215 Rickettsia montana ATCC VR-611
prokMSA_id:5975 D38628 Rickettsia sibirica ATCC VR151
prokMSA_id:5976 L36673 Rickettsia parkeri str. Maculatum 20
prokMSA_id:19942 AF141908 Rickettsia sp. IRS4 
prokMSA_id:27672 AF120025 Rickettsia sp. DnS14 strain DnS14 
prokMSA_id:28211 AF178036 Rickettsia sp. BJ-90 
prokMSA_id:44963 AE008647 Rickettsia conorii Malish 7 section 79 of 114 of the complet
prokMSA_id:45313 AF120026 Rickettsia sp. RpA4 strain RpA4 
prokMSA_id:48125 NC_003103 Rickettsia conorii Malish 7 complete genome
prokMSA_id:49155 AF141907 Rickettsia sp. IRS3 
prokMSA_id:55503 AF394904 Rickettsia sp. IP1 
prokMSA_id:65324 AF394906 Rickettsia sp. IO1 
prokMSA_id:65325 AF394905 Rickettsia sp. IM1 
prokMSA_id:65326 AF394903 Rickettsia sp. FLA1 
prokMSA_id:65330 AF394902 Rickettsia sp. DT1 
prokMSA_id:65333 AY049981 Rickettsia sp. AT1 
prokMSA_id:73835 D38628 Rickettsia sibirica strain ATCC VR151 
2.28.1.8.5.5.42517 OTU 6 seqs
prokMSA_id:5943 L36099 Rickettsia akari str. MK Kaplan
prokMSA_id:5944 U11019 Rickettsia rhipicephali
prokMSA_id:5949 U42084 Rickettsia sp. str. PAR
prokMSA_id:26925 AF120024 Rickettsia sp. DnS28 strain DnS28 
prokMSA_id:37110 AF178037 Rickettsia sp. HLJ-054 
prokMSA_id:75477 AY158006 Rickettsia sp. JL-02 
2.28.1.8.5.5.42885 OTU 2 seqs
prokMSA_id:5932 L36221 Rickettsia typhi str. Wilmington
prokMSA_id:5939 U12463 Rickettsia typhi str. Wilmington
2.28.1.8.5.5.42886 OTU 2 seqs
prokMSA_id:5941 L36104 Rickettsia canadensis str. 2678
prokMSA_id:5968 U15162 Rickettsia canadensis str. McKeil
2.28.1.8.5.5.4421 OTU 1 seq
prokMSA_id:35350 AF445655 alpha clone SM1B06 
2.28.1.8.5.5.5174 OTU 1 seq
prokMSA_id:66159 AF493952 Rickettsiales 'Montezuma' 
2.28.1.8.5.5.8101 OTU 1 seq
prokMSA_id:82176 AF497583 clone Hw124 
2.28.1.8.5.6 ORIENTIA_SUBGROUP 17 seqs
2.28.1.8.5.6.26836 OTU 17 seqs
prokMSA_id:5977 D38625 Orientia tsutsugamushi str. Kawasaki
prokMSA_id:5978 D38627 Orientia tsutsugamushi str. Shimokoshi
prokMSA_id:5979 D38624 Orientia tsutsugamushi str. Kato
prokMSA_id:5980 U17258 Orientia tsutsugamushi str. Kato
prokMSA_id:5981 D38623 Orientia tsutsugamushi str. Karp
prokMSA_id:5982 AF062074 Orientia tsutsugamushi str. Litchfield
prokMSA_id:5983 U17257 Orientia tsutsugamushi str. Karp
prokMSA_id:5984 D38626 Orientia tsutsugamushi str. Kuroki
prokMSA_id:5985 L36222 Orientia tsutsugamushi str. Gilliam
prokMSA_id:5986 U17256 Orientia tsutsugamushi str. Gilliam
prokMSA_id:5987 D38622 Orientia tsutsugamushi str. Gilliam
prokMSA_id:71790 D38624 Rickettsia tsutsugamushi strain Kato 
prokMSA_id:72018 D38627 Rickettsia tsutsugamushi strain Shimokoshi 
prokMSA_id:72291 D38625 Rickettsia tsutsugamushi strain Kawasaki 
prokMSA_id:72689 D38622 Rickettsia tsutsugamushi strain Gilliam 
prokMSA_id:72798 D38623 Rickettsia tsutsugamushi strain Karp 
prokMSA_id:73599 D38626 Rickettsia tsutsugamushi strain Kuroki 
2.28.1.8.5.8 EHR.RISTICII_SUBGROUP 16 seqs
2.28.1.8.5.8.16851 OTU 1 seq
prokMSA_id:6002 AF069062 str. WSA
2.28.1.8.5.8.16852 OTU 1 seq
prokMSA_id:6003 AF036649 Ehrlichia risticii
2.28.1.8.5.8.171 OTU 1 seq
prokMSA_id:17901 AF206298 Ehrlichia sp. 'trout isolate' 
2.28.1.8.5.8.33357 OTU 13 seqs
prokMSA_id:5996 M21290 Ehrlichia risticii str. Illinois ATCC VR-986 alpha purple
prokMSA_id:5998 AF036653 Ehrlichia risticii
prokMSA_id:6004 AF036654 Ehrlichia risticii
prokMSA_id:6005 AF037210 Ehrlichia risticii str. SHSN-1
prokMSA_id:6006 AF037211 Ehrlichia risticii str. SHSN-2
prokMSA_id:6007 U34280 Ehrlichia sp
prokMSA_id:6011 M73225 Ehrlichia sennetsu str. 11908
prokMSA_id:6012 M73219 Ehrlichia sennetsu str. Miyayama
prokMSA_id:24883 AY005439 Ehrlichia risticii isolate S22 
prokMSA_id:31250 AY005441 Ehrlichia risticii isolate S6 
prokMSA_id:33480 AF206300 Ehrlichia risticii from Caddisfly larvae 
prokMSA_id:67336 AF380257 Ehrlichia risticii from horse 1 
prokMSA_id:67337 AF380258 Ehrlichia risticii from horse 2 
2.28.1.8.5.9 EHRLICHIA_SUBGROUP 85 seqs
2.28.1.8.5.9.1 EHR.CANIS_SUBGROUP 37 seqs
2.28.1.8.5.9.1.16911 OTU 1 seq
prokMSA_id:6025 AF104680 unnamed organism
2.28.1.8.5.9.1.33112 OTU 7 seqs
prokMSA_id:6014 U23503 Ehrlichia chaffeensis str. 91HE17
prokMSA_id:6015 U60476 Ehrlichia chaffeensis str. Sapulpa
prokMSA_id:6016 U86664 Ehrlichia chaffeensis str. Jax
prokMSA_id:6017 U86665 Ehrlichia chaffeensis str. St. Vincent
prokMSA_id:6018 AF147752 Ehrlichia chaffeensis complete 
prokMSA_id:6032 M73222 Ehrlichia chaffeensis str. Arkansas
prokMSA_id:19195 AF416764 Ehrlichia chaffeensis strain Arkansas ; and succinate dehydr
2.28.1.8.5.9.1.40901 OTU 26 seqs
prokMSA_id:6019 M73221 Ehrlichia canis str. Oklahoma
prokMSA_id:6022 AF162860 Ehrlichia canis str. Gzh982
prokMSA_id:6023 U54805 Ehrlichia sp. str. Germishuys
prokMSA_id:6024 X61659 Cowdria ruminantium str. Crystal Springs Zimbabwe isolate
prokMSA_id:6026 M73227 Ehrlichia ewingii str. Stillwater
prokMSA_id:6027 U96436 Ehrlichia ewingii str. 95E9-TS
prokMSA_id:6028 U15527 Ehrlichia muris str. AS145 ATCC VR-1411
prokMSA_id:6030 AB013008 Ehrlichia muris str. I268
prokMSA_id:6031 AB013009 Ehrlichia muris str. NA1
prokMSA_id:6033 M73226 Ehrlichia canis str. Florida
prokMSA_id:6034 AF069758 Cowdria ruminantium str. Mara 87/7
prokMSA_id:6035 U03776 Cowdria ruminantium str. Omatjenne
prokMSA_id:6036 U03777 Cowdria ruminantium str. Ball3
prokMSA_id:6037 X62432 Cowdria ruminantium str. d from Senegal stock
prokMSA_id:6038 U26740 Ehrlichia canis str. 611
prokMSA_id:16712 AF318021 Cowdria ruminantium Porto Henrique 
prokMSA_id:30672 AF260591 Ehrlichia sp. HI-2000 
prokMSA_id:36711 AB024928 Ehrlichia sp. HF565 
prokMSA_id:38150 AF318946 Ehrlichia ovina 
prokMSA_id:40434 AB028319 Ehrlichia sp. Anan 
prokMSA_id:41424 AF414399 Ehrlichia sp. Tibet 
prokMSA_id:48642 AF325175 Cowdria sp. 'South African canine' 
prokMSA_id:50091 AF318022 Cowdria ruminantium Bela Vista 
prokMSA_id:70749 AF311968 Ehrlichia sp. EHt224 
prokMSA_id:72979 U03776 Cowdria ruminantium 
prokMSA_id:74141 U03777 Cowdria ruminantium 
2.28.1.8.5.9.1.42707 OTU 3 seqs
prokMSA_id:59553 AY135531 Ehrlichia sp. 'Rattus strain' 
prokMSA_id:63883 AB084582 Ehrlichia-like sp. TK4456 
prokMSA_id:63884 AB074460 Ehrlichia sp. IS58 
2.28.1.8.5.9.2 EHR.PHAGOCYTOPHILA_SUBGROUP 48 seqs
2.28.1.8.5.9.2.16987 OTU 1 seq
prokMSA_id:6052 AB015538 str. BD2-8
2.28.1.8.5.9.2.33046 OTU 28 seqs
prokMSA_id:6041 M82801 Ehrlichia platys
prokMSA_id:6042 AF156784 Ehrlichia platys str. Gzh981
prokMSA_id:6047 U52514 unnamed organism
prokMSA_id:6048 U54806 Ehrlichia sp. str. Omatjenne
prokMSA_id:6049 U02521 Ehrlichia sp
prokMSA_id:6051 AF057707 Ehrlichia sp
prokMSA_id:6053 AF084907 Ehrlichia sp
prokMSA_id:6054 U10873 Ehrlichia sp. str. rosa
prokMSA_id:6058 U77389 Ehrlichia sp. str. Swiss horse 1
prokMSA_id:6059 AJ242783 Ehrlichia sp
prokMSA_id:6061 M73220 Ehrlichia phagocytophila str. OS Old Sourhope
prokMSA_id:6062 M73224 Ehrlichia phagocytophila str. FG feral goat
prokMSA_id:6066 AF093788 Ehrlichia 'HGE agent' str. CAHU-HGE1
prokMSA_id:6067 AF093789 Ehrlichia 'HGE agent' str. CAHU-HGE2
prokMSA_id:6069 AF172164 Ehrlichia equi str. CASOLJ
prokMSA_id:6070 AF172165 Ehrlichia equi str. CAMEBS
prokMSA_id:6071 AF172166 Ehrlichia equi str. CASITL
prokMSA_id:6072 AF172167 Ehrlichia equi str. CAMAWI
prokMSA_id:6073 AJ242784 Ehrlichia sp
prokMSA_id:6074 M73223 Ehrlichia equi
prokMSA_id:18302 AF287153 Ehrlichia platys 
prokMSA_id:24415 AF303467 Anaplasma platys 
prokMSA_id:25787 AF469005 Ehrlichia sp. RND-1 
prokMSA_id:33737 AF318023 Ehrlichia sp. Bom Pastor 
prokMSA_id:39876 AY055469 Anaplasma phagocytophilum complete ; and succinate dehydroge
prokMSA_id:42949 AF286699 Ehrlichia platys 
prokMSA_id:49397 AF241532 Ehrlichia sp. 'LGE agent' 
prokMSA_id:57516 AY077619 Anaplasma platys isolate Okinawa 
2.28.1.8.5.9.2.34583 OTU 17 seqs
prokMSA_id:6039 M60313 Anaplasma marginale
prokMSA_id:18751 AF309865 Anaplasma ovis strain Idaho 
prokMSA_id:23009 AF309867 Anaplasma marginale strain Florida 
prokMSA_id:25427 AF283007 Anaplasma centrale 
prokMSA_id:28040 AF309866 Anaplasma marginale strain Virginia 
prokMSA_id:28557 AF318944 Anaplasma centrale 
prokMSA_id:29417 AF309869 Anaplasma centrale strain Israel vaccine 
prokMSA_id:30827 AF311303 Anaplasma marginale 
prokMSA_id:44706 AF309868 Anaplasma marginale strain South Idaho 
prokMSA_id:50430 AF318945 Anaplasma ovis 
prokMSA_id:58998 AY048816 Anaplasma marginale 
prokMSA_id:79130 AF414876 Anaplasma marginale isolate tailed from Israel 
prokMSA_id:79178 AF414874 Anaplasma marginale strain F12 from Australia 
prokMSA_id:79180 AF414871 Anaplasma marginale from South Africa from black wildebeest 
prokMSA_id:79361 AF414872 Anaplasma marginale isolate Eland from South Africa 
prokMSA_id:79444 AF414868 Anaplasma centrale strain vaccine from Australia 
prokMSA_id:79581 AF414873 Anaplasma marginale strain Veld from South Africa 
2.28.1.8.5.9.2.42860 OTU 2 seqs
prokMSA_id:6040 U03775 Ehrlichia bovis
prokMSA_id:74038 U03775 Ehrlichia bovis 
2.28.1.8.5.10 WOLBACHIA_SUBGROUP 51 seqs
2.28.1.8.5.10.15178 OTU 1 seq
prokMSA_id:23566 AJ276500 Wolbachia endosymbiont of Dirofilaria repens 
2.28.1.8.5.10.17570 OTU 1 seq
prokMSA_id:6107 AF069068 unnamed organism
2.28.1.8.5.10.17599 OTU 1 seq
prokMSA_id:6117 L02886 symbiont of Trichogramma deion
2.28.1.8.5.10.33306 OTU 3 seqs
prokMSA_id:6134 AJ010276 Wolbachia sp
prokMSA_id:19317 AJ276498 Wolbachia endosymbiont of Onchocerca gutturosa 
prokMSA_id:23966 AJ276499 Wolbachia endosymbiont of Onchocerca gibsoni 
2.28.1.8.5.10.34082 OTU 34 seqs
prokMSA_id:6080 U17060 Wolbachia sp
prokMSA_id:6082 L02882 symbiont of Muscifidurax uniraptor
prokMSA_id:6088 X61768 Wolbachia pipientis
prokMSA_id:6090 M84686 symbiont of incompatibility symbiont of Nasonia vitripennis
prokMSA_id:6093 AF035160 Wolbachia sp
prokMSA_id:6094 U83090 Wolbachia sp
prokMSA_id:6095 U83091 Wolbachia sp
prokMSA_id:6096 U83092 Wolbachia sp
prokMSA_id:6097 U83093 Wolbachia sp
prokMSA_id:6098 U83094 Wolbachia sp
prokMSA_id:6099 U83095 Wolbachia sp
prokMSA_id:6100 U83096 Wolbachia sp
prokMSA_id:6101 U83097 Wolbachia sp
prokMSA_id:6105 L02884 symbiont of Trichogramma deion
prokMSA_id:6106 M84688 symbiont of incompatibility symbiont of Nasonia vitripennis
prokMSA_id:6108 U80584 Wolbachia sp
prokMSA_id:6109 U83098 Wolbachia sp
prokMSA_id:6113 M84687 symbiont of incompatibility symbiont of Nasonia vitripennis
prokMSA_id:6118 M84692 symbiont of incompatibility symbiont of Nasonia longicornis
prokMSA_id:6127 M84690 symbiont of incompatibility symbiont of Nasonia giraulti
prokMSA_id:6128 U23709 Wolbachia pipientis
prokMSA_id:6129 AB025965 Wolbachia sp
prokMSA_id:6130 U17059 Wolbachia sp
prokMSA_id:6142 L02887 symbiont of Trichogramma deion
prokMSA_id:18468 AY007548 Wolbachia sp. Ablan16SWol 
prokMSA_id:28156 AY007549 Wolbachia sp. Avit16SWol 
prokMSA_id:28825 AF179630 Wolbachia pipientis 
prokMSA_id:30977 AY007551 Wolbachia sp. WCR16SWol 
prokMSA_id:34685 AF220604 Wolbachia sp
prokMSA_id:41221 AY007547 Wolbachia sp. Dlem16SWol 
prokMSA_id:52243 AY007550 Wolbachia sp. Dcris16SWol 
prokMSA_id:52332 AF232234 Wolbachia endosymbiont of Nephila clavata 
prokMSA_id:72880 AJ422184 Wolbachia endosymbiont of Mesaphorura macrochaeta 
prokMSA_id:77810 AJ509026 Wolbachia endosymbiont of Paratullbergia callipygos 
2.28.1.8.5.10.41279 OTU 2 seqs
prokMSA_id:6132 AF088187 unnamed organism
prokMSA_id:73265 Z49261 Wolbachia endosymbiont of Dirofilaria immitis 
2.28.1.8.5.10.42837 OTU 4 seqs
prokMSA_id:6121 M85267 endosymbiont of Rhinocyllus conicus
prokMSA_id:6140 M84691 symbiont of incompatibility symbiont of Nasonia longicornis
prokMSA_id:40260 Y11377 Wolbachia endosymbiont of Kalotermes flavicollis specific ho
prokMSA_id:51738 AJ292347 Wolbachia endosymbiont of Microcerotermes sp
2.28.1.8.5.10.42855 OTU 2 seqs
prokMSA_id:6104 L02888 symbiont of Trichogramma deion
prokMSA_id:6120 M84689 symbiont of incompatibility symbiont of Nasonia giraulti
2.28.1.8.5.10.42883 OTU 2 seqs
prokMSA_id:6124 AJ010275 Wolbachia sp
prokMSA_id:6125 AF051145 unnamed organism
2.28.1.8.5.10.7540 OTU 1 seq
prokMSA_id:50758 AJ279034 Wolbachia endosymbiont of Mansonella ozzardi 
2.28.1.8.99 VARIOUS 5 seqs
2.28.1.8.99.38390 OTU 5 seqs
prokMSA_id:75643 AJ534211 Jannaschia sp. DFL-12 isolate DFL-12
prokMSA_id:76848 AJ534216 Jannaschia sp. DFL-27 isolate DFL-27
prokMSA_id:76961 AJ534217 Jannaschia sp. DFL-30 isolate DFL-30
prokMSA_id:77178 AJ534221 Jannaschia sp. DFL-38 isolate DFL-38
prokMSA_id:77237 AJ534213 Jannaschia sp. DFL-16 isolate DFL-16
2.28.1.10 SPHINGOMONAS_GROUP 282 seqs
2.28.1.10.1 SPG.YANOIKUYAE_SUBGROUP 16 seqs
2.28.1.10.1.17729 OTU 1 seq
prokMSA_id:6157 X87164 Sphingomonas flava str. RA2 DSM 8671
2.28.1.10.1.17725 OTU 1 seq
prokMSA_id:6155 AF039168 Sphingomonas paucimobilis str. UT26
2.28.1.10.1.17755 OTU 1 seq
prokMSA_id:6162 AJ011505 Sphingomonas sp. str. DhA-33
2.28.1.10.1.17813 OTU 1 seq
prokMSA_id:6183 AB000106 Sphingomonas sp. str. VT1
2.28.1.10.1.17816 OTU 1 seq
prokMSA_id:6184 U65912 clone Sar248
2.28.1.10.1.17798 OTU 1 seq
prokMSA_id:6179 X87163 Sphingomonas flava ATCC 29723
2.28.1.10.1.41263 OTU 6 seqs
prokMSA_id:6163 X94100 Sphingomonas paucimobilis str. EPA 505
prokMSA_id:6165 AF025350 Sphingomonas BRW2 str. BRW2
prokMSA_id:6168 X87161 Sphingomonas chlorophenolica ATCC 33790
prokMSA_id:6178 U37341 Sphingomonas paucimobilis
prokMSA_id:24311 AF395036 Sphingomonas sp. G296-3 
prokMSA_id:38158 Y12803 Sphingomonas agrestis 
2.28.1.10.1.42921 OTU 3 seqs
prokMSA_id:6169 AB025572 Sphingomonas MBIC3992 str. MBIC3992
prokMSA_id:50339 AY047219 Sphingobium yanoikuyae 
prokMSA_id:81332 AY206698 Sphingomonas xenophaga 
2.28.1.10.1.4387 OTU 1 seq
prokMSA_id:42569 AF245652 gamma NAC60-12 
2.28.1.10.2 SPG.SP_STR_UN1F1_SUBGROUP 10 seqs
2.28.1.10.2.1741 OTU 1 seq
prokMSA_id:50060 AJ427917 Sphingomonas sp. JS1 
2.28.1.10.2.17842 OTU 1 seq
prokMSA_id:6193 AF177917 Sphingomonas DhA-95 str. DhA-95
2.28.1.10.2.17845 OTU 1 seq
prokMSA_id:6194 AB021416 Pseudomonas abikonensis IAM 12404
2.28.1.10.2.17854 OTU 1 seq
prokMSA_id:6197 AJ007875 clone LD10
2.28.1.10.2.18744 OTU 1 seq
prokMSA_id:40332 AJ000918 Rhizomonas sp. K6 strain K6
2.28.1.10.2.18963 OTU 1 seq
prokMSA_id:32571 AY026948 Sphingomonas sp. ML1 
2.28.1.10.2.19340 OTU 1 seq
prokMSA_id:71130 AJ009709 Sphingomonas sp. isolate K74 
2.28.1.10.2.3835 OTU 1 seq
prokMSA_id:49721 AF143839 clone AF1.5 
2.28.1.10.2.42916 OTU 2 seqs
prokMSA_id:6201 AB025279 Sphingomonas MBIC3020 str. MBIC3020
prokMSA_id:6202 L22759 str. C7
2.28.1.10.3 SPG.SP_STR_SYK6 1 seq
2.28.1.10.3.18334 OTU 1 seq
prokMSA_id:6203 D16149 Sphingomonas sp. str. SYK6
2.28.1.10.4 ZYM.MOBILIS_SUBGROUP 11 seqs
2.28.1.10.4.18198 OTU 1 seq
prokMSA_id:18013 AJ009706 Sphingomonas sp. K101 isolate K101
2.28.1.10.4.18337 OTU 1 seq
prokMSA_id:6206 U87784 Afipia genosp. 13 str. G8991
2.28.1.10.4.18336 OTU 1 seq
prokMSA_id:6205 AB021492 Sphingomonas wittichii strain DSM 6014
2.28.1.10.4.18335 OTU 1 seq
prokMSA_id:6204 X94101 Sphingomonas sp. str. A175
2.28.1.10.4.26365 OTU 7 seqs
prokMSA_id:6210 U63733 Zymomonas mobilis str. ZM4
prokMSA_id:28323 AF281032 Zymomonas mobilis strain ATCC29192 
prokMSA_id:38516 AF281034 Zymomonas mobilis strain ATCC29191 
prokMSA_id:39861 AF281033 Zymomonas mobilis 
prokMSA_id:43499 AF281031 Zymomonas mobilis strain ATCC10988 
prokMSA_id:47404 AF088897 Zymomonas mobilis cosmid clone 65G3 
prokMSA_id:50955 AF117351 Zymomonas mobilis rrnB operon ; RpfN rpfN complete cds; rrnC
2.28.1.10.5 SPG.PAUCIMOBILIS_SUBGROUP 36 seqs
2.28.1.10.5.16212 OTU 1 seq
prokMSA_id:77316 AY167840 Sphingomonas sp. SAFR-010 
2.28.1.10.5.17633 OTU 1 seq
prokMSA_id:77510 AY167833 Sphingomonas sp. SAFR-028 
2.28.1.10.5.18141 OTU 1 seq
prokMSA_id:40282 AB021370 Sphingomonas echinoides strain ATCC 14820T
2.28.1.10.5.18387 OTU 1 seq
prokMSA_id:6222 D16146 Sphingomonas adhaesiva GIFU 11458
2.28.1.10.5.32199 OTU 8 seqs
prokMSA_id:6219 ?. Z23157 Blastobacter sp. str. BF14
prokMSA_id:6223 AJ012461 Pseudomonas echinoides DSM 1805
prokMSA_id:6224 AJ001344 unnamed organism
prokMSA_id:6227 AB015565 str. BD5-9
prokMSA_id:31767 X89903 Sphingomonas sp. PC5.2 strain PC5.2
prokMSA_id:42568 AJ290027 GKS2-124 
prokMSA_id:44873 AF385529 Sphingomonas sp. oral clone AV069 
prokMSA_id:48722 X89909 Sphingomonas sp. PC5.28 strain PC5.28
2.28.1.10.5.34594 OTU 6 seqs
prokMSA_id:6221 AF184221 Pseudomonas Ant20 str. Ant20
prokMSA_id:22537 AF395031 Sphingomonas sp. M3C203B-B 
prokMSA_id:55900 AF548567 Sphingomonas sp. eh2 
prokMSA_id:56243 AJ429239 Sphingomonas faenia strain MA-olki
prokMSA_id:60251 AJ429237 Sphingomonas aurantiaca strain MA306a
prokMSA_id:71383 AJ429240 Sphingomonas aerolata strain NW12
2.28.1.10.5.35064 OTU 3 seqs
prokMSA_id:58870 AF423077 Alpha '#33 orange' 
prokMSA_id:70529 AF227857 str. 86356 
prokMSA_id:73719 AF324199 Sphingomonas sp. V1 
2.28.1.10.5.39781 OTU 2 seqs
prokMSA_id:26323 D84520 Sphingomonas sp. MK341 
prokMSA_id:77307 AY167834 Sphingomonas sp. SAFR-027 
2.28.1.10.5.40718 OTU 10 seqs
prokMSA_id:6212 D13724 Sphingomonas parapaucimobilis IFO 15100
prokMSA_id:6215 D16144 Sphingomonas paucimobilis GIFU 2395
prokMSA_id:6217 U20776 Sphingomonas paucimobilis ATCC 29837
prokMSA_id:6229 U37337 Sphingomonas paucimobilis ATCC 29837
prokMSA_id:23168 D84523 Sphingomonas sp. MK355 
prokMSA_id:27012 D84529 Sphingomonas sanguis 
prokMSA_id:43164 D84525 Sphingomonas parapaucimobilis 
prokMSA_id:44864 AB033944 Sphingomonas echinoides 
prokMSA_id:59540 AF538746 CAGY7 strain CAGY7 
prokMSA_id:60396 AF513440 Sphingomonadaceae LA19 
2.28.1.10.5.5996 OTU 1 seq
prokMSA_id:42710 D84519 Sphingomonas sp. MK331 
2.28.1.10.5.6410 OTU 1 seq
prokMSA_id:19915 D84518 Sphingomonas sp. MK329 
2.28.1.10.5.9567 OTU 1 seq
prokMSA_id:58866 AF425997 UNSW2 
2.28.1.10.6 SPG.PRUNI_SUBGROUP 44 seqs
2.28.1.10.6.12531 OTU 1 seq
prokMSA_id:76149 AJ518765 alpha clone JG37-AG-18
2.28.1.10.6.1343 OTU 1 seq
prokMSA_id:34362 AF423289 soil clone 739-2 
2.28.1.10.6.13757 OTU 1 seq
prokMSA_id:44980 AF408323 Sphingomonas sp. clone KL-2-4-7 
2.28.1.10.6.14917 OTU 1 seq
prokMSA_id:68657 AY081987 clone KRA30-07 
2.28.1.10.6.15598 OTU 1 seq
prokMSA_id:31402 AJ292605 WD286 clone WD286
2.28.1.10.6.17710 OTU 1 seq
prokMSA_id:77538 AY081166 Sphingomonas sp. S-2 
2.28.1.10.6.18206 OTU 1 seq
prokMSA_id:25242 AB033945 Sphingomonas sp. strain:IFO 15914
2.28.1.10.6.18444 OTU 1 seq
prokMSA_id:6242 AJ224938 str. Koll-1
2.28.1.10.6.18450 OTU 1 seq
prokMSA_id:6248 Y09639 Sphingomonas asaccharolytica IFO 10564
2.28.1.10.6.18447 OTU 1 seq
prokMSA_id:6245 AF115500 Caulobacter WCP2020S str. WCP2020S
2.28.1.10.6.18469 OTU 1 seq
prokMSA_id:6251 AB018439 Sphingomonas sp. str. S213
2.28.1.10.6.2657 OTU 1 seq
prokMSA_id:50190 AF445712 alpha clone SM2B06 
2.28.1.10.6.31431 OTU 2 seqs
prokMSA_id:6247 AF031240 Sphingomonas JSS-28 str. JSS-28 KCTC 2883
prokMSA_id:6250 AF131296 Sphingomonas JSS-26 str. JSS-26
2.28.1.10.6.33515 OTU 11 seqs
prokMSA_id:6241 X97776 Sphingomonas trueperi LMG 2142
prokMSA_id:19856 AB033948 Sphingomonas sp. strain:IFO 15495
prokMSA_id:21753 AB033946 Sphingomonas sp. strain:IFO 15496
prokMSA_id:40384 AJ243751 Sphingomonas pituitosa strain EDIV
prokMSA_id:47031 AB033947 Sphingomonas sp. strain:IFO 15497
prokMSA_id:56495 AF503283 Sphingomonas sp. ATCC 35159 
prokMSA_id:65321 AF503282 Sphingomonas sp. ATCC 31853 
prokMSA_id:65322 AF503281 Sphingomonas sp. ATCC 31961 
prokMSA_id:65323 AF503277 Sphingomonas sp. ATCC 21423 
prokMSA_id:65327 AF503279 Sphingomonas sp. ATCC 31554 
prokMSA_id:65329 AF503278 Sphingomonas elodea 
2.28.1.10.6.3411 OTU 1 seq
prokMSA_id:72535 AF423253 soil clone 367-2 
2.28.1.10.6.3443 OTU 1 seq
prokMSA_id:65328 AF503280 Sphingomonas sp. ATCC 31555 
2.28.1.10.6.35419 OTU 6 seqs
prokMSA_id:6234 AJ007800 Asticcacaulis excentricus ACM 1263
prokMSA_id:6235 AJ007799 Asticcacaulis biprosthecium str. MBIC3411 ACM 2498
prokMSA_id:6236 AJ227812 Caulobacter leidyi ATCC 15260
prokMSA_id:6238 AF116181 Caulobacter CB296 str. CB296
prokMSA_id:6239 AJ007806 Caulobacter leidyi ATCC 15260
prokMSA_id:6240 AB008391 Caulobacter leidyi ATCC 15260
2.28.1.10.6.3855 OTU 1 seq
prokMSA_id:49731 AF395032 Sphingomonas sp. SIA181-1A1 
2.28.1.10.6.4530 OTU 1 seq
prokMSA_id:65471 AY102311 clone a13104 
2.28.1.10.6.4533 OTU 1 seq
prokMSA_id:65473 AY102309 clone a13102 
2.28.1.10.6.5226 OTU 1 seq
prokMSA_id:73393 AF423277 soil clone 565-2 
2.28.1.10.6.6669 OTU 1 seq
prokMSA_id:20557 AJ307938 mRNA clone sipK48
2.28.1.10.6.6702 OTU 1 seq
prokMSA_id:74174 AF423293 soil clone 768-2 
2.28.1.10.6.6974 OTU 1 seq
prokMSA_id:36286 X89905 Sphingomonas sp. BF2 strain BF2
2.28.1.10.6.7329 OTU 1 seq
prokMSA_id:50700 AJ292591 WD208 clone WD208
2.28.1.10.6.8960 OTU 1 seq
prokMSA_id:75048 AJ532708 alpha clone JG34-KF-388
2.28.1.10.6.9568 OTU 1 seq
prokMSA_id:58867 AF425996 UNSW1 
2.28.1.10.6.9877 OTU 1 seq
prokMSA_id:74534 AY102315 clone a13108 
2.28.1.10.7 RHZ.SUBERIFACIENS_SUBGROUP 6 seqs
2.28.1.10.7.18263 OTU 1 seq
prokMSA_id:55355 AB084247 Sphingomonas sp. Y2 
2.28.1.10.7.18476 OTU 1 seq
prokMSA_id:6258 U65908 clone Sar324
2.28.1.10.7.18473 OTU 1 seq
prokMSA_id:6255 D13737 Rhizomonas suberifaciens IFO 15211
2.28.1.10.7.30374 OTU 3 seqs
prokMSA_id:19587 AF355038 delta Arctic95A-13 
prokMSA_id:20106 AF355041 delta Arctic96BD-3 
prokMSA_id:31338 AF355039 delta Arctic95C-5 
2.28.1.10.9 BLA.NATATORIA_SUBGROUP 12 seqs
2.28.1.10.9.13056 OTU 1 seq
prokMSA_id:61114 AF530148 Alpha MGP-68 
2.28.1.10.9.15434 OTU 1 seq
prokMSA_id:68724 AF479381 Glacial ice M3C1.8K-TD9 
2.28.1.10.9.18497 OTU 1 seq
prokMSA_id:6263 AF170744 Erythromonas QSSC5-6 str. QSSC5-6
2.28.1.10.9.2325 OTU 1 seq
prokMSA_id:19427 AF418947 clone HTB9 
2.28.1.10.9.35506 OTU 8 seqs
prokMSA_id:6262 Y10677 Erythromonas ursincola str. KR-99 DSM 9006
prokMSA_id:6264 AB024288 Blastomonas natatoria DSM 3183
prokMSA_id:6265 AB024289 Erythromonas ursincola str. KR-99 DSM 9006
prokMSA_id:6266 AB002653 str. HTA473
prokMSA_id:6268 X73043 Blastomonas natatoria ATCC 35951
prokMSA_id:6269 Y13774 Blastomonas natatoria DSM 3183
prokMSA_id:61834 AF529332 alpha clone CLi292 
prokMSA_id:72160 U20772 Blastobacter sp. SMCC B0477 
2.28.1.10.11 SPG.SUBARCTICA_SUBGROUP 45 seqs
2.28.1.10.11.12675 OTU 1 seq
prokMSA_id:45467 AF235994 Alpha F0917 
2.28.1.10.11.15047 OTU 1 seq
prokMSA_id:24166 AB074191 Sphingomonas sp. HL7 
2.28.1.10.11.17132 OTU 1 seq
prokMSA_id:69624 AY145559 Alpha AP-22 
2.28.1.10.11.17248 OTU 1 seq
prokMSA_id:38923 AF432337 alpha 4%N-26d-5 
2.28.1.10.11.18580 OTU 1 seq
prokMSA_id:6291 AB025720 Sphingomonas MBIC1965 str. MBIC1965
2.28.1.10.11.19375 OTU 1 seq
prokMSA_id:39863 AF411072 Sphingomonas sp. ACM-3962 
2.28.1.10.11.20752 OTU 1 seq
prokMSA_id:17742 AJ292599 WD249 clone WD249
2.28.1.10.11.20820 OTU 1 seq
prokMSA_id:77937 AB076396 Sphingomonas sp. IW3 
2.28.1.10.11.23504 OTU 4 seqs
prokMSA_id:6285 AB025012 Sphingomonas aromaticivorans IFO 16084
prokMSA_id:70401 U20774 Sphingomonas aromaticivorans SMCC B0522 
prokMSA_id:73612 U20755 Sphingomonas aromaticivorans SMCC B0695 
prokMSA_id:74445 U20756 Sphingomonas aromaticivorans SMCC F199 
2.28.1.10.11.2363 OTU 1 seq
prokMSA_id:79611 AF468353 Arctic sea ice ARK10016 
2.28.1.10.11.33470 OTU 3 seqs
prokMSA_id:6278 D16147 Sphingomonas capsulata GIFU 11526
prokMSA_id:6279 AJ001051 Sphingomonas A28241 str. A28241
prokMSA_id:6280 AJ001053 Sphingomonas C28242 str. C28242
2.28.1.10.11.34502 OTU 2 seqs
prokMSA_id:22564 AJ290014 FukuS56 
prokMSA_id:36069 AJ292613 WD2119 clone WD2119
2.28.1.10.11.36817 OTU 8 seqs
prokMSA_id:6274 X94102 Sphingomonas subarctica str. KF1
prokMSA_id:6286 AB025014 Sphingomonas subterranea IFO 16086
prokMSA_id:6289 X94103 Sphingomonas subarctica str. KF3
prokMSA_id:6302 X94104 Sphingomonas subarctica str. NKF1
prokMSA_id:51683 AJ289994 FukuN22 
prokMSA_id:57342 AY151394 Novosphingobium subarcticum 
prokMSA_id:70921 U20773 Sphingomonas subterraneae SMCC B0478 
prokMSA_id:77528 AY167828 Novosphingomonas subarcticum strain SAFR-035 
2.28.1.10.11.37640 OTU 7 seqs
prokMSA_id:6287 AB023290 Sphingomonas sp. str. MBIC4193
prokMSA_id:6290 AJ001052 Sphingomonas B28161 str. B28161
prokMSA_id:6292 Z93995 clone T28
prokMSA_id:6293 AF025352 Sphingomonas D16 str. D16
prokMSA_id:6297 AJ224989 str. from Lake Gossenkoellesee
prokMSA_id:28794 AF235996 Alpha F06021 
prokMSA_id:78207 AB074642 alpha clone:APe9_4
2.28.1.10.11.38517 OTU 2 seqs
prokMSA_id:6298 AJ223450 str. 2a
prokMSA_id:71360 AF434172 Sphingomonas sp. AV6C 
2.28.1.10.11.38509 OTU 2 seqs
prokMSA_id:6296 AB025013 Sphingomonas stygia IFO 16085
prokMSA_id:44107 U20775 Sphingomonas stygialis SMCC B0712 
2.28.1.10.11.4303 OTU 1 seq
prokMSA_id:73289 AY007681 Unknown marine alpha JP63.1 
2.28.1.10.11.6971 OTU 1 seq
prokMSA_id:36281 AB064271 Sphingomonas sp. KA1 
2.28.1.10.11.815 OTU 1 seq
prokMSA_id:18607 AB070237 Novosphingomonas sp. ARI-1 
2.28.1.10.11.8356 OTU 1 seq
prokMSA_id:80924 AF468381 Arctic sea ice ARK9996 
2.28.1.10.11.8469 OTU 1 seq
prokMSA_id:37092 AJ000920 Novosphingobium sp. K16 strain K16
2.28.1.10.11.951 OTU 1 seq
prokMSA_id:78821 AB088760 Novosphingobium sp. J30 
2.28.1.10.11.9589 OTU 1 seq
prokMSA_id:52205 AJ318120 alpha clone BIfcii31
2.28.1.10.11.9887 OTU 1 seq
prokMSA_id:21583 AF097802 clone 1958 
2.28.1.10.12 SPG.MACROGOLTABIDUS_SUBGROUP 17 seqs
2.28.1.10.12.13049 OTU 1 seq
prokMSA_id:61110 AF530152 Alpha MGP-83 
2.28.1.10.12.15430 OTU 1 seq
prokMSA_id:45857 AJ416410 Sphingopyxis witflariensis 
2.28.1.10.12.18637 OTU 1 seq
prokMSA_id:69828 AY145545 Alpha AP-7 
2.28.1.10.12.19103 OTU 1 seq
prokMSA_id:6321 AB015577 str. BD7-1
2.28.1.10.12.19101 OTU 1 seq
prokMSA_id:6320 D13727 Sphingomonas terrae str. E-1-A IFO 15098
2.28.1.10.12.21236 OTU 1 seq
prokMSA_id:26262 AB076083 Alpha 7CY 
2.28.1.10.12.21800 OTU 1 seq
prokMSA_id:70814 AY145547 Alpha AP-9-1 
2.28.1.10.12.33356 OTU 3 seqs
prokMSA_id:6313 D13722 Sphingomonas adhaesiva IFO 15099
prokMSA_id:31367 AF327069 Sphingomonas sp. SA-3 
prokMSA_id:68620 AY081981 clone KRA30+14 
2.28.1.10.12.41206 OTU 2 seqs
prokMSA_id:6329 AB015049 Sphingomonas sp. str. MBIC3365
prokMSA_id:44192 AB033950 Sphingomonas sp. strain:IFO 15917
2.28.1.10.12.41472 OTU 3 seqs
prokMSA_id:60514 AF410927 Sphingomonas sp. B18 
prokMSA_id:69966 AY145544 Alpha AP-6 
prokMSA_id:72895 AY145546 Alpha AP-8 
2.28.1.10.12.9278 OTU 1 seq
prokMSA_id:81691 AY212804 Sphingomonas sp. EVA17 
2.28.1.10.12.9385 OTU 1 seq
prokMSA_id:29325 AF235997 Alpha F0813 
2.28.1.10.13 ERB.LONGUS_SUBGROUP 49 seqs
2.28.1.10.13.10645 OTU 1 seq
prokMSA_id:81820 AB105441 clone:A-6
2.28.1.10.13.10921 OTU 1 seq
prokMSA_id:37398 AF310724 Alpha NAP1 
2.28.1.10.13.12523 OTU 1 seq
prokMSA_id:76145 AJ519653 alpha clone GuBH2-AG-57
2.28.1.10.13.12786 OTU 1 seq
prokMSA_id:74914 AJ294339 Alpha HY-68 isolate HY-68
2.28.1.10.13.13420 OTU 1 seq
prokMSA_id:53381 AY026916 Lutibacterium anuloederans 
2.28.1.10.13.15803 OTU 1 seq
prokMSA_id:16463 AJ391206 Erythrobacter sp. AS-45 
2.28.1.10.13.33475 OTU 14 seqs
prokMSA_id:6343 AB033325 Porphyrobacter KK348 str. KK348
prokMSA_id:6344 AB033328 Porphyrobacter tepidarius str. OT3 DSM 10594
prokMSA_id:6350 AB033327 Porphyrobacter neustonensis DSM 9434
prokMSA_id:6351 AB021493 IAM 12620
prokMSA_id:6352 AB022015 Porphyrobacter MBIC3936 str. MBIC3936
prokMSA_id:6353 AB002654 str. HTA456
prokMSA_id:6354 AB017113 str. MBIC2280
prokMSA_id:6361 AB033326 Porphyrobacter KK351 str. KK351
prokMSA_id:21655 AF445710 alpha clone SM2B03 
prokMSA_id:24395 AB062105 Agrobacterium sanguineum strain:ATCC 25660
prokMSA_id:37650 AY048657 Porphyrobacter tepidarius strain OK5APO 
prokMSA_id:39689 AB062106 Agrobacterium sanguineum strain:ATCC 25661
prokMSA_id:50853 AF235995 Alpha F0812 
prokMSA_id:54234 AJ271042 alpha strain 15s.b
2.28.1.10.13.35498 OTU 2 seqs
prokMSA_id:6339 AB017812 str. MBIC3953
prokMSA_id:6340 AB017813 str. MBIC3952
2.28.1.10.13.35538 OTU 2 seqs
prokMSA_id:6345 AB016518 Porphyrobacter MBIC3897 str. MBIC3897
prokMSA_id:6364 AJ223452 str. 4b
2.28.1.10.13.37155 OTU 2 seqs
prokMSA_id:6360 AB013354 Erythrobacter litoralis str. T431-1187 DSM 8509
prokMSA_id:79367 AF465836 Erythrobacter litoralis strain DSM 8509 
2.28.1.10.13.37184 OTU 4 seqs
prokMSA_id:6362 AB019044 str. MBIC1402
prokMSA_id:33344 AB035545 Erythrobacter sp. MBIC4118 
prokMSA_id:64083 AF500005 Erythrobacter flavus strain SW-52 
prokMSA_id:64084 AF500004 Erythrobacter flavus strain SW-46 
2.28.1.10.13.40709 OTU 10 seqs
prokMSA_id:6336 AB012061 str. MBIC2351
prokMSA_id:6337 AB012062 Erythrobacter MBIC3019 str. MBIC3019
prokMSA_id:6338 AB011075 Erythrobacter sp. str. Re1
prokMSA_id:6359 M96744 Erythrobacter longus str. OCh 101
prokMSA_id:29655 AB035544 Erythrobacter sp. MBIC4117 
prokMSA_id:30952 AF325446 Erythrobacter sp. MB-16 
prokMSA_id:33905 AF314528 Erythrobacter citreus 
prokMSA_id:38512 AY007680 Erythrobacter sp. JP13.1 
prokMSA_id:43392 AF325445 Erythrobacter sp. SD-21 
prokMSA_id:49902 AF227259 Erythrobacter citreus 
2.28.1.10.13.41157 OTU 2 seqs
prokMSA_id:31853 AF432339 alpha 4%N-26d-7 
prokMSA_id:40322 AF432338 alpha 4%N-26d-27 
2.28.1.10.13.42577 OTU 2 seqs
prokMSA_id:77813 AJ505839 Alpha A-col-BFA-6 isolate A-col-BFA-6
prokMSA_id:79541 AF465834 Porphyrobacter cryptus strain ALC-2 
2.28.1.10.13.42610 OTU 3 seqs
prokMSA_id:58405 AB008814 Alpha MBIC3030 
prokMSA_id:78562 AB094461 Erythrobacter sp. 2216.25.25 
prokMSA_id:79915 AF468357 Arctic sea ice ARK10031 
2.28.1.10.13.6153 OTU 1 seq
prokMSA_id:58404 AB008815 Alpha MBIC3035 
2.28.1.10.13.6150 OTU 1 seq
prokMSA_id:58400 AB008816 Erythrobacter sp. MBIC3031 
2.28.1.10.14 SAN.SIBIRICUS 1 seq
2.28.1.10.14.19202 OTU 1 seq
prokMSA_id:6365 Y10678 Sandaracinobacter sibiricus str. RB16-17
2.28.1.10.99 VARIOUS 34 seqs
2.28.1.10.99.41904 OTU 4 seqs
prokMSA_id:6220 AF105023 Sphingomonas DD38 str. DD38
prokMSA_id:6249 AF131295 Sphingomonas sp. JSS-7 
prokMSA_id:43848 D84521 Sphingomonas sp. MK346 
prokMSA_id:63347 AB055863 Sphingomonas melonis 
2.28.1.10.99.42528 OTU 16 seqs
prokMSA_id:6181 U52146 Sphingomonas sp. str. CF06
prokMSA_id:6325 D13723 Sphingomonas macrogoltabidus str. 203 IFO 15033
prokMSA_id:6326 AB022601 Sphingomonas KT-1 str. KT-1
prokMSA_id:6327 Z73631 Sphingomonas sp. str. RB2256
prokMSA_id:6328 AF131297 Sphingomonas JSS-54 str. JSS-54
prokMSA_id:19973 AF145753 Sphingomonas alaska strain RB2515 
prokMSA_id:40084 AF378796 Sphingomonas alaskensis strain AF01 
prokMSA_id:41591 AB040739 Sphingomonas sp. S-3 
prokMSA_id:42066 AB047364 Sphingomonas sp. YT 
prokMSA_id:42377 AF378795 Sphingomonas alaskensis strain RB2256 
prokMSA_id:52193 D84530 Sphingomonas macrogoltabidus 
prokMSA_id:54257 AF145752 Sphingomonas alaska strain RB255 
prokMSA_id:60721 AF532188 Monochloroacetic-acid-degrading MCAA3 
prokMSA_id:66835 AF367204 Sphingomonas sp. S37 
prokMSA_id:72044 AF145754 Sphingomonas alaska strain RB2510 
prokMSA_id:74035 AF181572 Sphingomonas sp. JRL-5 
2.28.1.10.99.42778 OTU 14 seqs
prokMSA_id:6147 U37524 Sphingomonas yanoikuyae
prokMSA_id:6148 D13728 Sphingomonas yanoikuyae IFO 15102
prokMSA_id:6160 U37525 Sphingomonas yanoikuyae
prokMSA_id:6161 X85023 Sphingomonas yanoikuyae str. B1
prokMSA_id:6171 D16145 Sphingomonas yanoikuyae GIFU 9882
prokMSA_id:6172 X94099 Sphingomonas yanoikuyae str. B1
prokMSA_id:6173 AJ224940 Sphingomonas sp. str. Koll-16
prokMSA_id:6174 X87165 Sphingomonas sp. str. SS3 DSM 6432
prokMSA_id:6180 D13946 Sphingomonas yanoikuyae IFO 15163
prokMSA_id:6186 X87167 Sphingomonas sp. str. Q1
prokMSA_id:56342 AF494099 Sphingomonas sp. KMG425 
prokMSA_id:59708 AB091683 Sphingomonas sp. P2 
prokMSA_id:70433 AF181571 Sphingomonas sp. JRL-4 
prokMSA_id:78108 AB074601 alpha clone:APe4_19
2.28.1.99 VARIOUS 7 seqs
2.28.1.99.27021 OTU 2 seqs
prokMSA_id:17111 AF234696 sludge H4 
prokMSA_id:44246 AF234692 sludge H29 
2.28.1.99.32080 OTU 2 seqs
prokMSA_id:29896 AF255640 alpha clone Ebpr11 
prokMSA_id:44677 AF255630 alpha clone Ebpr9 
2.28.1.99.42039 OTU 3 seqs
prokMSA_id:17960 AF422632 clone d021 
prokMSA_id:21627 AF422680 clone d157 
prokMSA_id:40501 AF422634 clone d023 
2.28.2 BETA_SUBDIVISION 2161 seqs
2.28.2.1 NEISSERIA_GROUP 875 seqs
2.28.2.1.2 MVR.AERODENITRIFICANS_SUBGROUP 7 seqs
2.28.2.1.2.15400 OTU 1 seq
prokMSA_id:76586 AY168746 clone HC-39 
2.28.2.1.2.15756 OTU 1 seq
prokMSA_id:16445 AF389085 Laribacter hongkongensis 
2.28.2.1.2.24196 OTU 3 seqs
prokMSA_id:6367 U89333 Microvirgula aerodenitrificans str. SGLY2
prokMSA_id:66302 AB074526 Aquaspirillum dispar 
prokMSA_id:74077 AF455113 Microvirgula aerodenitrificans strain NZ753-98 
2.28.2.1.2.4668 OTU 1 seq
prokMSA_id:64884 AB076000 Aquaspirillum putridiconchylium 
2.28.2.1.2.6727 OTU 1 seq
prokMSA_id:66305 AB074518 Aquaspirillum serpens 
2.28.2.1.3 VG.INDIGOFERA_SUBGROUP 1 seq
2.28.2.1.3.12326 OTU 1 seq
prokMSA_id:36932 AF227863 str. 82348 
2.28.2.1.4 CRB.VIOLACEUM_SUBGROUP 22 seqs
2.28.2.1.4.18446 OTU 1 seq
prokMSA_id:77630 AB089102 beta clone:Rs-D51
2.28.2.1.4.19213 OTU 1 seq
prokMSA_id:6372 AB013258 str. NKB6
2.28.2.1.4.19217 OTU 1 seq
prokMSA_id:6374 AB017489 str. MBIC3903
2.28.2.1.4.19215 OTU 1 seq
prokMSA_id:6373 AB017487 Chromobacterium MBIC3901 str. MBIC3901
2.28.2.1.4.20472 OTU 1 seq
prokMSA_id:63490 AY117564 Chromobacterium sp. 44 complete 
2.28.2.1.4.32786 OTU 3 seqs
prokMSA_id:63484 AY117569 Chromobacterium sp. 68 complete 
prokMSA_id:63485 AY117572 Chromobacterium sp. 71 complete 
prokMSA_id:63487 AY117567 Chromobacterium sp. 66 complete 
2.28.2.1.4.42597 OTU 11 seqs
prokMSA_id:56639 AY117562 Chromobacterium sp. 27 complete 
prokMSA_id:63483 AY117571 Chromobacterium sp. 70 complete 
prokMSA_id:63488 AY117566 Chromobacterium sp. 62 complete 
prokMSA_id:63489 AY117565 Chromobacterium sp. 53 complete 
prokMSA_id:63492 AY117560 Chromobacterium sp. 06 complete 
prokMSA_id:63493 AY117561 Chromobacterium sp. 21 complete 
prokMSA_id:63494 AY117559 Chromobacterium sp. 46 complete 
prokMSA_id:63495 AY117558 Chromobacterium sp. 29 complete 
prokMSA_id:63497 AY117556 Chromobacterium sp. 23 complete 
prokMSA_id:63500 AY117555 Chromobacterium sp. 64 complete 
prokMSA_id:63505 AY117552 Chromobacterium sp. 48 complete 
2.28.2.1.4.42606 OTU 3 seqs
prokMSA_id:55614 AY117554 Chromobacterium violaceum strain 52 complete 
prokMSA_id:63496 AY117557 Chromobacterium violaceum strain 07 complete 
prokMSA_id:63503 AY117553 Chromobacterium violaceum strain 49 complete 
2.28.2.1.5 VIT.STERCORARIA_SUBGROUP 1 seq
2.28.2.1.5.19220 OTU 1 seq
prokMSA_id:6375 L06174 Vitreoscilla stercoraria ATCC 15218
2.28.2.1.6 NIS.CANIS_SUBGROUP 7 seqs
2.28.2.1.6.19224 OTU 1 seq
prokMSA_id:6378 L06170 Neisseria canis str. H6 ATCC 14687
2.28.2.1.6.2838 OTU 1 seq
prokMSA_id:58031 AF487709 Neisseria dentiae V33 
2.28.2.1.6.41748 OTU 2 seqs
prokMSA_id:75279 AY157706 Neisseria sp. CCUG 46911 
prokMSA_id:75888 AY157705 Neisseria sp. CCUG 46910 
2.28.2.1.6.42648 OTU 2 seqs
prokMSA_id:56308 AB087262 Alysiella filiformis strain:IAM 14968
prokMSA_id:63986 AB087263 Alysiella filiformis strain:IAM 14895
2.28.2.1.6.5358 OTU 1 seq
prokMSA_id:42684 AY005029 Neisseria sp. oral clone AK105 
2.28.2.1.9 NIS.GONORRHOEAE_SUBGROUP 835 seqs
2.28.2.1.9.13379 OTU 1 seq
prokMSA_id:53370 AF328144 Simonsiella crassa strain ATCC29448 
2.28.2.1.9.14588 OTU 1 seq
prokMSA_id:53569 AY005028 Neisseria sp. oral strain B33KA 
2.28.2.1.9.1547 OTU 1 seq
prokMSA_id:49446 AF320620 Eikenella corrodens 
2.28.2.1.9.18065 OTU 1 seq
prokMSA_id:70331 AF366267 Kingella sp. clone DE012 
2.28.2.1.9.19246 OTU 1 seq
prokMSA_id:6388 L06165 Eikenella sp. str. UB-204 CCUG 28283
2.28.2.1.9.19268 OTU 1 seq
prokMSA_id:6396 L10738 Neisseria weaveri CDC 8142
2.28.2.1.9.19882 OTU 1 seq
prokMSA_id:6429 AJ239291 Neisseria subflava str. U37
2.28.2.1.9.19990 OTU 1 seq
prokMSA_id:6467 AJ239286 Neisseria lactamica NCTC 10617
2.28.2.1.9.19987 OTU 1 seq
prokMSA_id:6465 AJ239284 Neisseria lactamica str. L20
2.28.2.1.9.2405 OTU 1 seq
prokMSA_id:63985 AB087265 Neisseria denitrificans strain:IAM 14975
2.28.2.1.9.2586 OTU 1 seq
prokMSA_id:73021 AY005024 Neisseria sp. oral clone AP067 
2.28.2.1.9.2632 OTU 1 seq
prokMSA_id:73049 AF385496 sp. oral clone EW049 
2.28.2.1.9.32140 OTU 2 seqs
prokMSA_id:33892 AF328152 Simonsiella sp. ATCC 27381 
prokMSA_id:72999 AF328150 Simonsiella sp. ATCC 29437 
2.28.2.1.9.32652 OTU 2 seqs
prokMSA_id:6387 M22516 Kingella denitrificans ATCC 33394
prokMSA_id:6473 L06166 Kingella denitrificans str. UB-294 CCUG 28284
2.28.2.1.9.33407 OTU 3 seqs
prokMSA_id:6406 AJ239278 Neisseria elongata subsp. glycolytica str. J2
prokMSA_id:6407 AJ239297 Neisseria elongata str. I1
prokMSA_id:6409 AJ239303 Neisseria elongata str. I4
2.28.2.1.9.42450 OTU 12 seqs
prokMSA_id:6400 AJ239279 Neisseria mucosa str. M5
prokMSA_id:6428 AJ239280 Neisseria flavescens str. LNP444
prokMSA_id:6430 AJ239295 Neisseria perflava str. U15
prokMSA_id:6438 AJ239287 Neisseria cinerea str. LNP1646
prokMSA_id:6444 AJ239298 Neisseria polysaccharea str. P8
prokMSA_id:6445 AJ239299 Neisseria cinerea str. F1
prokMSA_id:6446 AJ239300 Neisseria cinerea str. F3
prokMSA_id:28076 AF310614 Neisseria meningitidis strain N206/89 
prokMSA_id:60507 AF409944 Neisseria meningitidis strain M2671 
prokMSA_id:65959 AF382301 Neisseria meningitidis strain M7825 
prokMSA_id:72069 AF382294 Neisseria meningitidis strain M7890 
prokMSA_id:76751 AJ534660 beta clone S15A-MN33
2.28.2.1.9.42550 OTU 2 seqs
prokMSA_id:6402 L06171 Neisseria elongata ATCC 25295
prokMSA_id:6408 AJ239302 Neisseria elongata str. I3
2.28.2.1.9.42653 OTU 790 seqs
prokMSA_id:6433 AF059671 Neisseria meningitidis str. N.60/94
prokMSA_id:6439 AJ239289 Neisseria polysaccharea NCTC 11858
prokMSA_id:6440 AJ239290 Neisseria meningitidis str. B17
prokMSA_id:6448 AJ239306 Neisseria meningitidis str. M470
prokMSA_id:6449 AJ239307 Neisseria meningitidis str. 44/76
prokMSA_id:6450 AJ239308 Neisseria meningitidis str. HF116
prokMSA_id:6451 AJ239309 Neisseria meningitidis str. HF46
prokMSA_id:6452 AJ239310 Neisseria meningitidis str. N94II
prokMSA_id:6453 AJ239311 Neisseria meningitidis str. HF130
prokMSA_id:6454 AJ239313 Neisseria lactamica str. L17
prokMSA_id:6455 AJ239315 Neisseria polysaccharea str. P7
prokMSA_id:6457 X07714 Neisseria gonorrhoeae str. B 5025 NCTC 8375
prokMSA_id:6458 AF146369 Neisseria gonorrhoeae str. 76993
prokMSA_id:6469 AJ239304 Neisseria gonorrhoeae str. FA19
prokMSA_id:6471 AJ239312 Neisseria meningitidis str. S3446
prokMSA_id:16449 AF310395 Neisseria meningitidis strain M2708 
prokMSA_id:16455 AF310606 Neisseria meningitidis strain M7260 
prokMSA_id:16526 AF337939 Neisseria meningitidis strain M2380 
prokMSA_id:16709 AF310560 Neisseria meningitidis strain M2795 
prokMSA_id:16722 AF310518 Neisseria meningitidis strain M4022 
prokMSA_id:16816 AF310610 Neisseria meningitidis strain M4028 
prokMSA_id:16842 AF310591 Neisseria meningitidis strain M7139 
prokMSA_id:16884 AF310482 Neisseria meningitidis strain M131 
prokMSA_id:16956 AF310526 Neisseria meningitidis strain M1879 
prokMSA_id:17021 AF310519 Neisseria meningitidis strain M2468 
prokMSA_id:17115 AF310572 Neisseria meningitidis strain H355 
prokMSA_id:17166 AF337946 Neisseria meningitidis strain M2456 
prokMSA_id:17320 AF310514 Neisseria meningitidis strain M5375 
prokMSA_id:17381 AF310343 Neisseria meningitidis strain M28 
prokMSA_id:17418 AF310389 Neisseria meningitidis strain M620 
prokMSA_id:17419 AF310436 Neisseria meningitidis strain M1973 
prokMSA_id:17519 AF337922 Neisseria meningitidis strain M2373 
prokMSA_id:17715 AF310479 Neisseria meningitidis strain M33 
prokMSA_id:18156 AF310475 Neisseria meningitidis strain M4607 
prokMSA_id:18182 AF337929 Neisseria meningitidis strain M2454 
prokMSA_id:18187 AF310540 Neisseria meningitidis strain M6199 
prokMSA_id:18295 AF310598 Neisseria meningitidis strain M7100 
prokMSA_id:18508 AF337934 Neisseria meningitidis strain M2910 
prokMSA_id:18592 AF310367 Neisseria meningitidis strain M637 
prokMSA_id:18600 AF310416 Neisseria meningitidis strain M1958 
prokMSA_id:18792 AF310595 Neisseria meningitidis strain M4663 
prokMSA_id:18821 AF310362 Neisseria meningitidis strain M416 
prokMSA_id:18891 AF310401 Neisseria meningitidis strain M1971 
prokMSA_id:18892 AF310604 Neisseria meningitidis strain M7293 
prokMSA_id:18941 AF310469 Neisseria meningitidis strain M7162 
prokMSA_id:19016 AF310441 Neisseria meningitidis strain M786 
prokMSA_id:19125 AF337930 Neisseria meningitidis strain M2899 
prokMSA_id:19313 AF310351 Neisseria meningitidis strain M4212 
prokMSA_id:19554 AF310439 Neisseria meningitidis strain M1970 
prokMSA_id:19723 AF310603 Neisseria meningitidis strain M3729 
prokMSA_id:19847 AF310577 Neisseria meningitidis strain 539Ch 
prokMSA_id:20067 AF310476 Neisseria meningitidis strain M4895 
prokMSA_id:20191 AF310564 Neisseria meningitidis strain M2788 
prokMSA_id:20505 AF310528 Neisseria meningitidis strain M1650 
prokMSA_id:20579 AF337931 Neisseria meningitidis strain M2901 
prokMSA_id:20767 AF310599 Neisseria meningitidis strain M6477 
prokMSA_id:20817 AF310438 Neisseria meningitidis strain M1968 
prokMSA_id:20909 AF310515 Neisseria meningitidis strain M5374 
prokMSA_id:21090 AF310488 Neisseria meningitidis strain M143 
prokMSA_id:21335 AF310454 Neisseria meningitidis strain M1954 
prokMSA_id:21424 AF310575 Neisseria meningitidis strain M3005 
prokMSA_id:21465 AF310553 Neisseria meningitidis strain M1533 
prokMSA_id:21517 AF310459 Neisseria meningitidis strain M1952 
prokMSA_id:21618 AF310434 Neisseria meningitidis strain M1961 
prokMSA_id:21707 AF310369 Neisseria meningitidis strain M640 
prokMSA_id:21711 AF310506 Neisseria meningitidis strain M5370 
prokMSA_id:21847 AF310588 Neisseria meningitidis strain M2642 
prokMSA_id:22810 AF310460 Neisseria meningitidis strain M7166 
prokMSA_id:22945 AF310450 Neisseria meningitidis strain M7163 
prokMSA_id:23489 AF310520 Neisseria meningitidis strain M2578 
prokMSA_id:23627 AF310440 Neisseria meningitidis strain M1972 
prokMSA_id:23633 AF310349 Neisseria meningitidis strain M3686 
prokMSA_id:23944 AF310485 Neisseria meningitidis strain M34 
prokMSA_id:23951 AF310530 Neisseria meningitidis strain M1000 
prokMSA_id:23975 AF310504 Neisseria meningitidis strain M5367 
prokMSA_id:24064 AF310449 Neisseria meningitidis strain M7185 
prokMSA_id:24216 AF337942 Neisseria meningitidis strain M5496 
prokMSA_id:24250 AF310370 Neisseria meningitidis strain M631 
prokMSA_id:24706 AF310363 Neisseria meningitidis strain M433 
prokMSA_id:24797 AF310354 Neisseria meningitidis strain M1540 
prokMSA_id:24897 AF310341 Neisseria meningitidis strain M7289 
prokMSA_id:24959 AF310552 Neisseria meningitidis strain M4214 
prokMSA_id:24994 AF310382 Neisseria meningitidis strain M2370 
prokMSA_id:25143 AF310380 Neisseria meningitidis strain M7164 
prokMSA_id:25266 AF310615 Neisseria meningitidis strain M3742 
prokMSA_id:25352 AF310458 Neisseria meningitidis strain M1960 
prokMSA_id:25551 AF310373 Neisseria meningitidis strain M632 
prokMSA_id:25767 AF310607 Neisseria meningitidis strain M5391 
prokMSA_id:26013 AF310612 Neisseria meningitidis strain M7092 
prokMSA_id:26122 AF310570 Neisseria meningitidis strain N106/89 
prokMSA_id:26140 AF310533 Neisseria meningitidis strain M7295 
prokMSA_id:26155 AF310347 Neisseria meningitidis strain M6304 
prokMSA_id:26220 AF310451 Neisseria meningitidis strain M1959 
prokMSA_id:26288 AF310393 Neisseria meningitidis strain M4027 
prokMSA_id:26377 AF337918 Neisseria meningitidis strain M2907 
prokMSA_id:26393 AF310513 Neisseria meningitidis strain M5376 
prokMSA_id:26402 AF310366 Neisseria meningitidis strain M636 
prokMSA_id:26532 AF310358 Neisseria meningitidis strain M1536 
prokMSA_id:26563 AF310497 Neisseria meningitidis strain M4352 
prokMSA_id:27179 AF310517 Neisseria meningitidis strain M5373 
prokMSA_id:27260 AF310503 Neisseria meningitidis strain M5368 
prokMSA_id:27280 AF310377 Neisseria meningitidis strain M634 
prokMSA_id:27515 AF310455 Neisseria meningitidis 
prokMSA_id:27607 AF310500 Neisseria meningitidis strain M6137 
prokMSA_id:27629 AF310536 Neisseria meningitidis strain M7297 
prokMSA_id:27650 AF310413 Neisseria meningitidis strain M1963 
prokMSA_id:27717 AF310571 Neisseria meningitidis strain N348/88 
prokMSA_id:27814 AF337933 Neisseria meningitidis strain M2900 
prokMSA_id:27911 AF310491 Neisseria meningitidis strain M32 
prokMSA_id:27924 AF310361 Neisseria meningitidis strain M801 
prokMSA_id:28018 AF310567 Neisseria meningitidis strain N150/88 
prokMSA_id:28329 AF310466 Neisseria meningitidis strain M7161 
prokMSA_id:28871 AF337940 Neisseria meningitidis strain M2378 
prokMSA_id:29050 AF310357 Neisseria meningitidis strain M1537 
prokMSA_id:29168 AF310583 Neisseria meningitidis strain M1163 
prokMSA_id:29223 AF310379 Neisseria meningitidis strain M144 
prokMSA_id:29539 AF310348 Neisseria meningitidis strain M87 
prokMSA_id:29571 AF310403 Neisseria meningitidis strain M1974 
prokMSA_id:30183 AF310492 Neisseria meningitidis strain M149 
prokMSA_id:30205 AF337928 Neisseria meningitidis strain M2374 
prokMSA_id:30250 AF310573 Neisseria meningitidis strain CU385 
prokMSA_id:30442 AF310364 Neisseria meningitidis strain M419 
prokMSA_id:30575 AF310344 Neisseria meningitidis strain M3291 
prokMSA_id:30717 AF310457 Neisseria meningitidis strain M1962 
prokMSA_id:30770 AF310568 Neisseria meningitidis strain N157/86 
prokMSA_id:30984 AF310532 Neisseria meningitidis strain M3073 
prokMSA_id:31070 AF310581 Neisseria meningitidis strain M2726 
prokMSA_id:31261 AF310390 Neisseria meningitidis strain M1171 
prokMSA_id:31300 AF310412 Neisseria meningitidis strain M1530 
prokMSA_id:31622 AF310480 Neisseria meningitidis strain M151 
prokMSA_id:31772 AF310410 Neisseria meningitidis strain M1964 
prokMSA_id:31989 AF310360 Neisseria meningitidis strain M1534 
prokMSA_id:32023 AF310565 Neisseria meningitidis strain M2786 
prokMSA_id:32114 AF310384 Neisseria meningitidis strain M3790 
prokMSA_id:32179 AF310541 Neisseria meningitidis strain M239 
prokMSA_id:32237 AF310365 Neisseria meningitidis strain M635 
prokMSA_id:32412 AF310374 Neisseria meningitidis strain M418 
prokMSA_id:32430 AF310596 Neisseria meningitidis strain M2540 
prokMSA_id:32518 AF310584 Neisseria meningitidis strain M3388 
prokMSA_id:32566 AF310383 Neisseria meningitidis strain M785 
prokMSA_id:32757 AF310375 Neisseria meningitidis strain M803 
prokMSA_id:32810 AF310350 Neisseria meningitidis strain M1591 
prokMSA_id:33227 AF310445 Neisseria meningitidis strain M415 
prokMSA_id:33255 AF310550 Neisseria meningitidis strain N218/89 
prokMSA_id:33529 AF337944 Neisseria meningitidis strain M5493 
prokMSA_id:33832 AF310478 Neisseria meningitidis strain M140 
prokMSA_id:33951 AF310511 Neisseria meningitidis strain M6200 
prokMSA_id:34108 AF310566 Neisseria meningitidis strain M262 
prokMSA_id:34128 AF310405 Neisseria meningitidis strain M2837 
prokMSA_id:34166 AF337941 Neisseria meningitidis strain M5499 
prokMSA_id:34272 AF310593 Neisseria meningitidis strain M2635 
prokMSA_id:34491 AF310409 Neisseria meningitidis strain M1951 
prokMSA_id:34827 AF310474 Neisseria meningitidis strain M4039 
prokMSA_id:34913 AF310398 Neisseria meningitidis strain M1969 
prokMSA_id:34961 AF310444 Neisseria meningitidis strain M638 
prokMSA_id:35121 AF337921 Neisseria meningitidis strain M2376 
prokMSA_id:35275 AF310446 Neisseria meningitidis strain M7292 
prokMSA_id:35344 AF310585 Neisseria meningitidis strain M1367 
prokMSA_id:35386 AF310510 Neisseria meningitidis strain M6201 
prokMSA_id:35579 AF310602 Neisseria meningitidis strain M7084 
prokMSA_id:35670 AF310353 Neisseria meningitidis strain M630 
prokMSA_id:36048 AF337923 Neisseria meningitidis strain M2372 
prokMSA_id:36172 AF310525 Neisseria meningitidis strain M2439 
prokMSA_id:36272 AF310608 Neisseria meningitidis strain M4041 
prokMSA_id:36308 AF310512 Neisseria meningitidis strain M5369 
prokMSA_id:36366 AF310524 Neisseria meningitidis strain M3157 
prokMSA_id:36524 AF310507 Neisseria meningitidis strain M6205 
prokMSA_id:36856 AF310359 Neisseria meningitidis strain M1535 
prokMSA_id:37135 AF310508 Neisseria meningitidis strain M6203 
prokMSA_id:37531 AF310456 Neisseria meningitidis strain M1953 
prokMSA_id:37827 AF310502 Neisseria meningitidis strain M5371 
prokMSA_id:38092 AF310371 Neisseria meningitidis strain M417 
prokMSA_id:38162 AF310490 Neisseria meningitidis strain M145 
prokMSA_id:38242 AF310574 Neisseria meningitidis strain N44/89 
prokMSA_id:38281 AF310494 Neisseria meningitidis strain M147 
prokMSA_id:38437 AF310400 Neisseria meningitidis strain M3045 
prokMSA_id:38467 AF310569 Neisseria meningitidis strain N49/88 
prokMSA_id:38484 AF310464 Neisseria meningitidis strain M7160 
prokMSA_id:38514 AF310578 Neisseria meningitidis strain BB393 
prokMSA_id:38641 AF310495 Neisseria meningitidis strain M146 
prokMSA_id:38671 AF310486 Neisseria meningitidis strain M27 
prokMSA_id:38755 AF310613 Neisseria meningitidis strain M128 
prokMSA_id:38799 AF310484 Neisseria meningitidis strain M153 
prokMSA_id:39114 AF310561 Neisseria meningitidis strain M2783 
prokMSA_id:39242 AF310586 Neisseria meningitidis strain M2637 
prokMSA_id:39323 AF337932 Neisseria meningitidis strain M2895 
prokMSA_id:39546 AF310356 Neisseria meningitidis strain M1538 
prokMSA_id:39690 AF310487 Neisseria meningitidis strain M30 
prokMSA_id:39747 AF310542 Neisseria meningitidis strain M3688 
prokMSA_id:39827 AF310605 Neisseria meningitidis strain M7290 
prokMSA_id:40255 AF337945 Neisseria meningitidis strain M2902 
prokMSA_id:40320 AF310556 Neisseria meningitidis strain N117/89 
prokMSA_id:40476 AF310443 Neisseria meningitidis strain M160 
prokMSA_id:40493 AF310516 Neisseria meningitidis strain M5372 
prokMSA_id:40550 AF310529 Neisseria meningitidis strain M4216 
prokMSA_id:40605 AF310535 Neisseria meningitidis strain M7294 
prokMSA_id:40712 AF310414 Neisseria meningitidis strain M1967 
prokMSA_id:40780 AF310435 Neisseria meningitidis strain M1966 
prokMSA_id:40808 AF310483 Neisseria meningitidis strain M29 
prokMSA_id:41222 AF310534 Neisseria meningitidis strain M7296 
prokMSA_id:41528 AF310346 Neisseria meningitidis strain M2656 
prokMSA_id:41583 AF479757 Neisseria meningitidis strain M8562 
prokMSA_id:41646 AF310611 Neisseria meningitidis strain M7259 
prokMSA_id:41710 AF310399 Neisseria meningitidis strain M1977 
prokMSA_id:41863 AF310402 Neisseria meningitidis strain M1975 
prokMSA_id:42057 AF337943 Neisseria meningitidis strain M5494 
prokMSA_id:42060 AF310465 Neisseria meningitidis strain M7159 
prokMSA_id:42156 AF310392 Neisseria meningitidis strain M2150 
prokMSA_id:42271 AF337936 Neisseria meningitidis strain M2903 
prokMSA_id:42501 AF310547 Neisseria meningitidis strain M26 
prokMSA_id:42688 AF310522 Neisseria meningitidis strain M1838 
prokMSA_id:43036 AF310404 Neisseria meningitidis strain M3039 
prokMSA_id:43148 AF310496 Neisseria meningitidis strain M540 
prokMSA_id:43508 AF310415 Neisseria meningitidis strain M1957 
prokMSA_id:43533 AF310477 Neisseria meningitidis strain M141 
prokMSA_id:43542 AF310391 Neisseria meningitidis strain M980 
prokMSA_id:43583 AF310563 Neisseria meningitidis strain M2781 
prokMSA_id:43618 AF310368 Neisseria meningitidis strain M413 
prokMSA_id:43867 AF310580 Neisseria meningitidis strain H276 
prokMSA_id:44176 AF310411 Neisseria meningitidis strain M1541 
prokMSA_id:44218 AF310452 Neisseria meningitidis strain M1955 
prokMSA_id:44373 AF310342 Neisseria meningitidis strain M209 
prokMSA_id:44511 AF310576 Neisseria meningitidis strain M5178 
prokMSA_id:44643 AF310352 Neisseria meningitidis strain M2286 
prokMSA_id:44724 AF310544 Neisseria meningitidis strain M4015 
prokMSA_id:44919 AF310437 Neisseria meningitidis strain M1976 
prokMSA_id:45127 AF310539 Neisseria meningitidis strain M 
prokMSA_id:45310 NC_003116 Neisseria meningitidis serogroup A strain Z2491 complete gen
prokMSA_id:45435 AF310461 Neisseria meningitidis strain M7167 
prokMSA_id:45858 AF337935 Neisseria meningitidis strain M2906 
prokMSA_id:45952 AF310470 Neisseria meningitidis strain M7168 
prokMSA_id:46099 AF310340 Neisseria meningitidis strain M7284 
prokMSA_id:46180 AF337938 Neisseria meningitidis strain M2382 
prokMSA_id:46303 NC_003112 Neisseria meningitidis serogroup B strain MC58 complete geno
prokMSA_id:46362 AF310493 Neisseria meningitidis strain M148 
prokMSA_id:46624 AF310558 Neisseria meningitidis strain N112/88 
prokMSA_id:46628 AF310562 Neisseria meningitidis strain M2782 
prokMSA_id:47017 AF337927 Neisseria meningitidis strain M2379 
prokMSA_id:47231 AF310448 Neisseria meningitidis strain M7288 
prokMSA_id:47374 AF337925 Neisseria meningitidis strain M2893 
prokMSA_id:47520 AF310378 Neisseria meningitidis strain M800 
prokMSA_id:47569 AF310592 Neisseria meningitidis strain M7060 
prokMSA_id:47575 AF310521 Neisseria meningitidis strain M548 
prokMSA_id:47636 AF310589 Neisseria meningitidis strain M2725 
prokMSA_id:47816 AF310587 Neisseria meningitidis strain M4775 
prokMSA_id:47819 AF310554 Neisseria meningitidis strain N171/88 
prokMSA_id:47888 AF310543 Neisseria meningitidis strain M414 
prokMSA_id:47971 AF310523 Neisseria meningitidis strain M44040 
prokMSA_id:48312 AF310376 Neisseria meningitidis strain M633 
prokMSA_id:48440 AF337924 Neisseria meningitidis strain M2904 
prokMSA_id:48453 AF310601 Neisseria meningitidis strain M7086 
prokMSA_id:48574 AF310559 Neisseria meningitidis strain 3966 
prokMSA_id:48661 AF310555 Neisseria meningitidis strain NZ3968 
prokMSA_id:48671 AF310489 Neisseria meningitidis strain M31 
prokMSA_id:48769 AF310505 Neisseria meningitidis strain M5377 
prokMSA_id:48804 AF310531 Neisseria meningitidis strain M3771 
prokMSA_id:49543 AF310355 Neisseria meningitidis strain M1539 
prokMSA_id:49621 AF310509 Neisseria meningitidis strain M6204 
prokMSA_id:49696 AF310600 Neisseria meningitidis strain M6266 
prokMSA_id:50577 AF310453 Neisseria meningitidis strain M1956 
prokMSA_id:51326 AF310501 Neisseria meningitidis strain M649 
prokMSA_id:51363 AF310594 Neisseria meningitidis strain M1366 
prokMSA_id:51456 AF310546 Neisseria meningitidis strain M6095 
prokMSA_id:51986 AF310499 Neisseria meningitidis strain M2568 
prokMSA_id:52065 AF310372 Neisseria meningitidis strain M802 
prokMSA_id:52086 AL162753 Neisseria meningitidis serogroup A strain Z2491 complete gen
prokMSA_id:52091 AF310582 Neisseria meningitidis strain M2727 
prokMSA_id:52102 AF310498 Neisseria meningitidis strain M1416 
prokMSA_id:52412 AF310597 Neisseria meningitidis strain M4660 
prokMSA_id:52639 AF310590 Neisseria meningitidis strain M7126 
prokMSA_id:52748 AF310579 Neisseria meningitidis strain F51/90 
prokMSA_id:52834 AF310551 Neisseria meningitidis strain M4797 
prokMSA_id:53052 AF337926 Neisseria meningitidis strain M2375 
prokMSA_id:53550 AF310527 Neisseria meningitidis strain M3262 
prokMSA_id:53651 AF310481 Neisseria meningitidis strain M152 
prokMSA_id:53813 AF310548 Neisseria meningitidis strain M1532 
prokMSA_id:53826 AF310381 Neisseria meningitidis strain M7165 
prokMSA_id:54109 AF310537 Neisseria meningitidis strain M7286 
prokMSA_id:54178 AF337937 Neisseria meningitidis strain M2381 
prokMSA_id:54210 AF310538 Neisseria meningitidis strain M6049 
prokMSA_id:54664 AF310447 Neisseria meningitidis strain M7291 
prokMSA_id:55247 AF398328 Neisseria meningitidis strain N.343/99 
prokMSA_id:55259 AF398317 Neisseria meningitidis strain M8252 
prokMSA_id:55260 AY132132 Neisseria meningitidis strain M8558 
prokMSA_id:55337 AY132075 Neisseria meningitidis strain M9239 
prokMSA_id:55347 AF398326 Neisseria meningitidis strain N.623/99 
prokMSA_id:55399 AY132147 Neisseria meningitidis strain M8591 
prokMSA_id:55459 AY132078 Neisseria meningitidis strain M9250 
prokMSA_id:55507 AF522613 Neisseria meningitidis strain N.580/01 
prokMSA_id:55512 AF522626 Neisseria meningitidis strain N.539/00 
prokMSA_id:55515 AY132034 Neisseria meningitidis strain M9262 
prokMSA_id:55548 AF522642 Neisseria meningitidis strain N.352/01 
prokMSA_id:55591 AF521627 Neisseria meningitidis strain N.40/01 
prokMSA_id:55802 AF398262 Neisseria meningitidis strain M7923 
prokMSA_id:55864 AY132100 Neisseria meningitidis strain M9024 
prokMSA_id:55872 AF398244 Neisseria meningitidis strain M4012 
prokMSA_id:55886 AY132076 Neisseria meningitidis strain M9241 
prokMSA_id:55940 AF522604 Neisseria meningitidis strain N.849/01 
prokMSA_id:55968 AY132115 Neisseria meningitidis strain M8561 
prokMSA_id:55997 AY132083 Neisseria meningitidis strain M9095 
prokMSA_id:55998 AF398324 Neisseria meningitidis strain N.31/00 
prokMSA_id:56009 AF398246 Neisseria meningitidis strain M3873 
prokMSA_id:56037 AF382286 Neisseria meningitidis strain M7841 
prokMSA_id:56051 AF522584 Neisseria meningitidis strain N.233/97 
prokMSA_id:56107 AY132108 Neisseria meningitidis strain M8861 
prokMSA_id:56138 AY132037 Neisseria meningitidis strain M9255 
prokMSA_id:56148 AF398307 Neisseria meningitidis strain M7485 
prokMSA_id:56153 AY132015 Neisseria meningitidis strain M9350 
prokMSA_id:56173 AF522583 Neisseria meningitidis strain N.923/99 
prokMSA_id:56213 AY137379 Neisseria meningitidis strain N.731/91 
prokMSA_id:56288 AY132061 Neisseria meningitidis strain M9263 
prokMSA_id:56303 AF522560 Neisseria meningitidis strain N.668/00 
prokMSA_id:56344 AY132102 Neisseria meningitidis strain M455 
prokMSA_id:56358 AF522558 Neisseria meningitidis strain N.527/00 
prokMSA_id:56441 AF522601 Neisseria meningitidis strain N.581/01 
prokMSA_id:56506 AF522569 Neisseria meningitidis strain N.885/00 
prokMSA_id:56520 AF522639 Neisseria meningitidis strain N.55/01 
prokMSA_id:56579 AY132058 Neisseria meningitidis strain M9267 
prokMSA_id:56629 AF382290 Neisseria meningitidis strain M7834 
prokMSA_id:56646 AY132126 Neisseria meningitidis strain M8557 
prokMSA_id:56674 AY132051 Neisseria meningitidis strain M9274 
prokMSA_id:56677 AF398248 Neisseria meningitidis strain M7933 
prokMSA_id:56689 AF409936 Neisseria meningitidis strain M1153 
prokMSA_id:56706 AF382293 Neisseria meningitidis strain M8017 
prokMSA_id:58158 AF522641 Neisseria meningitidis strain N.536/01 
prokMSA_id:58159 AF522640 Neisseria meningitidis strain N.364/01 
prokMSA_id:58160 AF522637 Neisseria meningitidis strain N.318/01 
prokMSA_id:58161 AF522638 Neisseria meningitidis strain N.203/01 
prokMSA_id:58162 AF522636 Neisseria meningitidis strain N.611/01 
prokMSA_id:58163 AF522635 Neisseria meningitidis strain N.729/01 
prokMSA_id:58164 AF522634 Neisseria meningitidis strain N.429/01 
prokMSA_id:58165 AF522633 Neisseria meningitidis strain N.854/99 
prokMSA_id:58166 AF522632 Neisseria meningitidis strain N.818/00 
prokMSA_id:58167 AF522631 Neisseria meningitidis strain N.639/00 
prokMSA_id:58168 AF522630 Neisseria meningitidis strain N.114/00 
prokMSA_id:58169 AF522629 Neisseria meningitidis strain N.35/00 
prokMSA_id:58170 AF522627 Neisseria meningitidis strain N.928/00 
prokMSA_id:58171 AF522628 Neisseria meningitidis strain N.700/00 
prokMSA_id:58172 AF522625 Neisseria meningitidis strain N.1112/01 
prokMSA_id:58173 AF522623 Neisseria meningitidis strain N.1072/01 
prokMSA_id:58174 AF522622 Neisseria meningitidis strain N.1059/01 
prokMSA_id:58175 AF522624 Neisseria meningitidis strain N.1109/01 
prokMSA_id:58176 AF522620 Neisseria meningitidis strain N.1037/01 
prokMSA_id:58177 AF522621 Neisseria meningitidis strain N.944/88 
prokMSA_id:58178 AF522619 Neisseria meningitidis strain N.1020/01 
prokMSA_id:58179 AF522615 Neisseria meningitidis strain N.969/01 
prokMSA_id:58180 AF522617 Neisseria meningitidis strain N.1005/01 
prokMSA_id:58181 AF522614 Neisseria meningitidis strain N.820/01 
prokMSA_id:58182 AF522618 Neisseria meningitidis strain N.1018/01 
prokMSA_id:58183 AF522616 Neisseria meningitidis strain N.985/01 
prokMSA_id:58184 AF522612 Neisseria meningitidis strain N.564/01 
prokMSA_id:58185 AF522610 Neisseria meningitidis strain N.451/01 
prokMSA_id:58186 AF522611 Neisseria meningitidis strain N.528/01 
prokMSA_id:58187 AF522609 Neisseria meningitidis strain N.958/01 
prokMSA_id:58188 AF522608 Neisseria meningitidis strain N.957/01 
prokMSA_id:58189 AF522606 Neisseria meningitidis strain N.952/01 
prokMSA_id:58190 AF522607 Neisseria meningitidis strain N.955/01 
prokMSA_id:58191 AF522605 Neisseria meningitidis strain N.855/01 
prokMSA_id:58192 AF522602 Neisseria meningitidis strain N.617/01 
prokMSA_id:58193 AF522603 Neisseria meningitidis strain N.637/01 
prokMSA_id:58194 AF522600 Neisseria meningitidis strain N.529/01 
prokMSA_id:58195 AF522599 Neisseria meningitidis strain N.502/01 
prokMSA_id:58196 AF522595 Neisseria meningitidis strain N.730/91 
prokMSA_id:58197 AF522598 Neisseria meningitidis strain N.356/01 
prokMSA_id:58198 AF522596 Neisseria meningitidis strain N.1097/90 
prokMSA_id:58199 AF522593 Neisseria meningitidis strain N.260/92 
prokMSA_id:58200 AF522597 Neisseria meningitidis strain N.295/01 
prokMSA_id:58201 AF522594 Neisseria meningitidis strain N.1020/92 
prokMSA_id:58202 AF522592 Neisseria meningitidis strain N.884/94 
prokMSA_id:58203 AF522591 Neisseria meningitidis strain N.429/94 
prokMSA_id:58204 AF522590 Neisseria meningitidis strain N.1243/95 
prokMSA_id:58205 AF522588 Neisseria meningitidis strain N.969/97 
prokMSA_id:58206 AF522589 Neisseria meningitidis strain N.971/97 
prokMSA_id:58207 AF522586 Neisseria meningitidis strain N.253/97 
prokMSA_id:58208 AF522585 Neisseria meningitidis strain N.253/88 
prokMSA_id:58209 AF522587 Neisseria meningitidis strain N.590/97 
prokMSA_id:58210 AF522581 Neisseria meningitidis strain N.337/99 
prokMSA_id:58211 AF522582 Neisseria meningitidis strain N.876/99 
prokMSA_id:58212 AF522580 Neisseria meningitidis strain N.248/99 
prokMSA_id:58213 AF522579 Neisseria meningitidis strain N.191/99 
prokMSA_id:58214 AF522578 Neisseria meningitidis strain N.173/99 
prokMSA_id:58215 AF522575 Neisseria meningitidis strain N.505/99 
prokMSA_id:58216 AF522577 Neisseria meningitidis strain N.133/99 
prokMSA_id:58217 AF522574 Neisseria meningitidis strain N.1213/00 
prokMSA_id:58218 AF522576 Neisseria meningitidis strain N.14/99 
prokMSA_id:58219 AF522572 Neisseria meningitidis strain N.1116/00 
prokMSA_id:58220 AF522573 Neisseria meningitidis strain N.1212/00 
prokMSA_id:58221 AF522570 Neisseria meningitidis strain N.892/00 
prokMSA_id:58222 AF522571 Neisseria meningitidis strain N.1113/00 
prokMSA_id:58223 AF522568 Neisseria meningitidis strain N.877/00 
prokMSA_id:58224 AF522566 Neisseria meningitidis strain N.837/00 
prokMSA_id:58225 AF522567 Neisseria meningitidis strain N.876/00 
prokMSA_id:58226 AF522562 Neisseria meningitidis strain N.727/00 
prokMSA_id:58227 AF522564 Neisseria meningitidis strain N.796/00 
prokMSA_id:58228 AF522563 Neisseria meningitidis strain N.728/00 
prokMSA_id:58229 AF522565 Neisseria meningitidis strain N.825/00 
prokMSA_id:58233 AF522559 Neisseria meningitidis strain N.667/00 
prokMSA_id:58234 AF522561 Neisseria meningitidis strain N.717/00 
prokMSA_id:58243 AF522557 Neisseria meningitidis strain N.430/00 
prokMSA_id:58247 AF522556 Neisseria meningitidis strain N.298/00 
prokMSA_id:58248 AF522555 Neisseria meningitidis strain N.211/00 
prokMSA_id:58250 AF522554 Neisseria meningitidis strain N.186/00 
prokMSA_id:58397 AL162757 Neisseria meningitidis serogroup A strain Z2491 complete gen
prokMSA_id:58398 AL162758 Neisseria meningitidis serogroup A strain Z2491 complete gen
prokMSA_id:58399 AL162752 Neisseria meningitidis serogroup A strain Z2491 complete gen
prokMSA_id:58734 AF521636 Neisseria meningitidis strain N.111/00 
prokMSA_id:58735 AF521634 Neisseria meningitidis strain N.501/01 
prokMSA_id:58736 AF521635 Neisseria meningitidis strain N.658/00 
prokMSA_id:58737 AF521633 Neisseria meningitidis strain N.495/01 
prokMSA_id:58738 AF521632 Neisseria meningitidis strain N.480/01 
prokMSA_id:58739 AF521630 Neisseria meningitidis strain N.392/01 
prokMSA_id:58740 AF521631 Neisseria meningitidis strain N.461/01 
prokMSA_id:58741 AF521629 Neisseria meningitidis strain N.357/01 
prokMSA_id:58742 AF521626 Neisseria meningitidis strain N.04/01 
prokMSA_id:58743 AF521628 Neisseria meningitidis strain N.294/01 
prokMSA_id:58745 AF521624 Neisseria meningitidis strain N.712/99 
prokMSA_id:58746 AF521625 Neisseria meningitidis strain N.02/01 
prokMSA_id:58747 AF521623 Neisseria meningitidis strain N.656/99 
prokMSA_id:58748 AF521622 Neisseria meningitidis strain N.977/00 
prokMSA_id:58757 AF521621 Neisseria meningitidis strain N.944/00 
prokMSA_id:58875 AY137384 Neisseria meningitidis strain N.419/91 
prokMSA_id:58877 AY137383 Neisseria meningitidis strain N.561/94 
prokMSA_id:58878 AY137382 Neisseria meningitidis strain N.1003/90 
prokMSA_id:58880 AY137381 Neisseria meningitidis strain N.668/90 
prokMSA_id:59209 AY138854 Neisseria meningitidis strain N.461/01 
prokMSA_id:59572 AY132150 Neisseria meningitidis strain M8589 
prokMSA_id:59576 AY132148 Neisseria meningitidis strain M8584 
prokMSA_id:59577 AY132145 Neisseria meningitidis strain M8578 
prokMSA_id:59578 AY132146 Neisseria meningitidis strain M8592 
prokMSA_id:59579 AY132144 Neisseria meningitidis strain M8598 
prokMSA_id:59580 AY132142 Neisseria meningitidis strain M8586 
prokMSA_id:59581 AY132140 Neisseria meningitidis strain M8595 
prokMSA_id:59582 AY132143 Neisseria meningitidis strain M8585 
prokMSA_id:59583 AY132141 Neisseria meningitidis strain M8587 
prokMSA_id:59584 AY132139 Neisseria meningitidis strain M8596 
prokMSA_id:59585 AY132138 Neisseria meningitidis strain M8597 
prokMSA_id:59586 AY132136 Neisseria meningitidis strain M8579 
prokMSA_id:59587 AY132137 Neisseria meningitidis strain M8590 
prokMSA_id:59588 AY132134 Neisseria meningitidis strain M8556 
prokMSA_id:59589 AY132135 Neisseria meningitidis strain M8555 
prokMSA_id:59590 AY132133 Neisseria meningitidis strain M8577 
prokMSA_id:59591 AY132130 Neisseria meningitidis strain M8601 
prokMSA_id:59592 AY132131 Neisseria meningitidis strain M8594 
prokMSA_id:59593 AY132129 Neisseria meningitidis strain M8564 
prokMSA_id:59594 AY132128 Neisseria meningitidis strain M8572 
prokMSA_id:59595 AY132127 Neisseria meningitidis strain M8560 
prokMSA_id:59596 AY132125 Neisseria meningitidis strain M8559 
prokMSA_id:59597 AY132124 Neisseria meningitidis strain M8566 
prokMSA_id:59598 AY132122 Neisseria meningitidis strain M8576 
prokMSA_id:59599 AY132123 Neisseria meningitidis strain M8570 
prokMSA_id:59600 AY132121 Neisseria meningitidis strain M8571 
prokMSA_id:59601 AY132120 Neisseria meningitidis strain M8573 
prokMSA_id:59602 AY132119 Neisseria meningitidis strain M8574 
prokMSA_id:59603 AY132118 Neisseria meningitidis strain M8575 
prokMSA_id:59604 AY132117 Neisseria meningitidis strain M8599 
prokMSA_id:59605 AY132116 Neisseria meningitidis strain M8600 
prokMSA_id:59606 AY132114 Neisseria meningitidis strain M8563 
prokMSA_id:59607 AY132113 Neisseria meningitidis strain M8567 
prokMSA_id:59608 AY132110 Neisseria meningitidis strain M8565 
prokMSA_id:59609 AY132109 Neisseria meningitidis strain M8860 
prokMSA_id:59610 AY132112 Neisseria meningitidis strain M8568 
prokMSA_id:59611 AY132111 Neisseria meningitidis strain M8569 
prokMSA_id:59612 AY132107 Neisseria meningitidis strain M8798 
prokMSA_id:59613 AY132106 Neisseria meningitidis strain M8799 
prokMSA_id:59614 AY132105 Neisseria meningitidis strain M8800 
prokMSA_id:59615 AY132104 Neisseria meningitidis strain M8829 
prokMSA_id:59616 AY132103 Neisseria meningitidis strain M8830 
prokMSA_id:59617 AY132097 Neisseria meningitidis strain M9025 
prokMSA_id:59618 AY132101 Neisseria meningitidis strain M9021 
prokMSA_id:59619 AY132098 Neisseria meningitidis strain M9023 
prokMSA_id:59620 AY132099 Neisseria meningitidis strain M9022 
prokMSA_id:59621 AY132096 Neisseria meningitidis strain M9026 
prokMSA_id:59622 AY132094 Neisseria meningitidis strain M9028 
prokMSA_id:59623 AY132095 Neisseria meningitidis strain M9027 
prokMSA_id:59624 AY132091 Neisseria meningitidis strain M9031 
prokMSA_id:59625 AY132093 Neisseria meningitidis strain M9029 
prokMSA_id:59626 AY132092 Neisseria meningitidis strain M9030 
prokMSA_id:59627 AY132090 Neisseria meningitidis strain M9032 
prokMSA_id:59628 AY132088 Neisseria meningitidis strain M9104 
prokMSA_id:59629 AY132089 Neisseria meningitidis strain M9103 
prokMSA_id:59630 AY132087 Neisseria meningitidis strain M9099 
prokMSA_id:59632 AY132086 Neisseria meningitidis strain M9098 
prokMSA_id:59633 AY132082 Neisseria meningitidis strain M9102 
prokMSA_id:59634 AY132084 Neisseria meningitidis strain M9096 
prokMSA_id:59635 AY132081 Neisseria meningitidis strain M9257 
prokMSA_id:59636 AY132080 Neisseria meningitidis strain M9256 
prokMSA_id:59637 AY132079 Neisseria meningitidis strain M9258 
prokMSA_id:59638 AY132077 Neisseria meningitidis strain M9252 
prokMSA_id:59639 AY132072 Neisseria meningitidis strain M9236 
prokMSA_id:59640 AY132073 Neisseria meningitidis strain M9237 
prokMSA_id:59641 AY132071 Neisseria meningitidis strain M9245 
prokMSA_id:59642 AY132069 Neisseria meningitidis strain M9242 
prokMSA_id:59643 AY132070 Neisseria meningitidis strain M9244 
prokMSA_id:59644 AY132068 Neisseria meningitidis strain M7883 
prokMSA_id:59645 AY132067 Neisseria meningitidis strain M9249 
prokMSA_id:59646 AY132066 Neisseria meningitidis strain M9251 
prokMSA_id:59647 AY132065 Neisseria meningitidis strain M9253 
prokMSA_id:59648 AY132064 Neisseria meningitidis strain M9254 
prokMSA_id:59649 AY132063 Neisseria meningitidis strain M9260 
prokMSA_id:59650 AY132060 Neisseria meningitidis strain M9265 
prokMSA_id:59651 AY132056 Neisseria meningitidis strain M9269 
prokMSA_id:59652 AY132062 Neisseria meningitidis strain M9261 
prokMSA_id:59653 AY132057 Neisseria meningitidis strain M9268 
prokMSA_id:59654 AY132059 Neisseria meningitidis strain M9266 
prokMSA_id:59655 AY132055 Neisseria meningitidis strain M9270 
prokMSA_id:59656 AY132054 Neisseria meningitidis strain M9271 
prokMSA_id:59657 AY132053 Neisseria meningitidis strain M9272 
prokMSA_id:59658 AY132050 Neisseria meningitidis strain M9275 
prokMSA_id:59659 AY132052 Neisseria meningitidis strain M9273 
prokMSA_id:59660 AY132047 Neisseria meningitidis strain M9278 
prokMSA_id:59661 AY132049 Neisseria meningitidis strain M9276 
prokMSA_id:59662 AY132048 Neisseria meningitidis strain M9289 
prokMSA_id:59663 AY132046 Neisseria meningitidis strain M9285 
prokMSA_id:59664 AY132045 Neisseria meningitidis strain M9286 
prokMSA_id:59665 AY132043 Neisseria meningitidis strain M9284 
prokMSA_id:59666 AY132044 Neisseria meningitidis strain M9287 
prokMSA_id:59667 AY132041 Neisseria meningitidis strain M9281 
prokMSA_id:59668 AY132042 Neisseria meningitidis strain M9282 
prokMSA_id:59669 AY132039 Neisseria meningitidis strain M9280 
prokMSA_id:59670 AY132040 Neisseria meningitidis strain M9279 
prokMSA_id:59671 AY132036 Neisseria meningitidis strain M9264 
prokMSA_id:59672 AY132038 Neisseria meningitidis strain M9235 
prokMSA_id:59673 AY132035 Neisseria meningitidis strain M9288 
prokMSA_id:59674 AY132032 Neisseria meningitidis strain M9290 
prokMSA_id:59675 AY132031 Neisseria meningitidis strain M9291 
prokMSA_id:59676 AY132029 Neisseria meningitidis strain M9298 
prokMSA_id:59677 AY132026 Neisseria meningitidis strain M9301 
prokMSA_id:59678 AY132027 Neisseria meningitidis strain M9295 
prokMSA_id:59679 AY132025 Neisseria meningitidis strain M9303 
prokMSA_id:59680 AY132030 Neisseria meningitidis strain M9297 
prokMSA_id:59681 AY132028 Neisseria meningitidis strain M9294 
prokMSA_id:59682 AY132024 Neisseria meningitidis strain M9296 
prokMSA_id:59683 AY132023 Neisseria meningitidis strain M9292 
prokMSA_id:59684 AY132022 Neisseria meningitidis strain M9293 
prokMSA_id:59685 AY132021 Neisseria meningitidis strain M9300 
prokMSA_id:59686 AY132020 Neisseria meningitidis strain M9299 
prokMSA_id:59687 AY132019 Neisseria meningitidis strain M9302 
prokMSA_id:59688 AY132017 Neisseria meningitidis strain M9311 
prokMSA_id:59689 AY132018 Neisseria meningitidis strain M9305 
prokMSA_id:59690 AY132014 Neisseria meningitidis strain M9351 
prokMSA_id:59691 AY132016 Neisseria meningitidis strain M9306 
prokMSA_id:60508 AF409945 Neisseria meningitidis strain M4645 
prokMSA_id:60509 AF409942 Neisseria meningitidis strain M574 
prokMSA_id:60510 AF409946 Neisseria meningitidis strain M690 
prokMSA_id:60511 AF409943 Neisseria meningitidis strain M1141 
prokMSA_id:60515 AF409932 Neisseria meningitidis strain M5798 
prokMSA_id:60516 AF409933 Neisseria meningitidis strain M1569 
prokMSA_id:60517 AF409940 Neisseria meningitidis strain M4643 
prokMSA_id:60518 AF409938 Neisseria meningitidis strain M4644 
prokMSA_id:60519 AF409937 Neisseria meningitidis strain M4646 
prokMSA_id:60520 AF409934 Neisseria meningitidis strain M1010 
prokMSA_id:60521 AF409935 Neisseria meningitidis strain M4211 
prokMSA_id:60522 AF409939 Neisseria meningitidis strain M4647 
prokMSA_id:60523 AF409929 Neisseria meningitidis strain M5182 
prokMSA_id:60524 AF409931 Neisseria meningitidis strain M5199 
prokMSA_id:60525 AF409927 Neisseria meningitidis strain M2929 
prokMSA_id:60526 AF409930 Neisseria meningitidis strain M5193 
prokMSA_id:60527 AF409926 Neisseria meningitidis strain M2934 
prokMSA_id:60528 AF409924 Neisseria meningitidis strain M2916 
prokMSA_id:60529 AF409925 Neisseria meningitidis strain M2922 
prokMSA_id:60530 AF409928 Neisseria meningitidis strain M2925 
prokMSA_id:60531 AF409922 Neisseria meningitidis strain M4210 
prokMSA_id:60532 AF409923 Neisseria meningitidis strain M5203 
prokMSA_id:60533 AF409921 Neisseria meningitidis strain M2932 
prokMSA_id:60534 AF409920 Neisseria meningitidis strain M4094 
prokMSA_id:60535 AF409919 Neisseria meningitidis strain M4209 
prokMSA_id:60536 AF409916 Neisseria meningitidis strain M3030 
prokMSA_id:60537 AF409918 Neisseria meningitidis strain M4102 
prokMSA_id:60538 AF409917 Neisseria meningitidis strain M4215 
prokMSA_id:60539 AF409914 Neisseria meningitidis strain M3734 
prokMSA_id:60540 AF409915 Neisseria meningitidis strain M1019 
prokMSA_id:60541 AF409913 Neisseria meningitidis strain M3782 
prokMSA_id:62752 AF399845 Neisseria meningitidis strain M8368F10 
prokMSA_id:62753 AF398329 Neisseria meningitidis strain N.685/99 
prokMSA_id:62754 AF398327 Neisseria meningitidis strain N.726/99 
prokMSA_id:62755 AF398325 Neisseria meningitidis strain N.33/00 
prokMSA_id:62756 AF398323 Neisseria meningitidis strain N.174/00 
prokMSA_id:62757 AF398322 Neisseria meningitidis strain N.753/00 
prokMSA_id:62758 AF398321 Neisseria meningitidis strain M8236 
prokMSA_id:62759 AF398320 Neisseria meningitidis strain M8237 
prokMSA_id:62760 AF398319 Neisseria meningitidis strain M8325 
prokMSA_id:62761 AF398318 Neisseria meningitidis strain M8323 
prokMSA_id:62762 AF398316 Neisseria meningitidis strain M8251 
prokMSA_id:62764 AF398313 Neisseria meningitidis strain M7919 
prokMSA_id:62765 AF398311 Neisseria meningitidis strain M7931 
prokMSA_id:62766 AF398310 Neisseria meningitidis strain M7724 
prokMSA_id:62767 AF398309 Neisseria meningitidis strain M7921 
prokMSA_id:62769 AF398312 Neisseria meningitidis strain M7739 
prokMSA_id:62770 AF398308 Neisseria meningitidis strain M7509 
prokMSA_id:62771 AF398306 Neisseria meningitidis strain M7929 
prokMSA_id:62772 AF398305 Neisseria meningitidis strain M7751 
prokMSA_id:62773 AF398303 Neisseria meningitidis strain M7746 
prokMSA_id:62774 AF398304 Neisseria meningitidis strain M7747 
prokMSA_id:62775 AF398302 Neisseria meningitidis strain M7750 
prokMSA_id:62776 AF398300 Neisseria meningitidis strain M7745 
prokMSA_id:62777 AF398301 Neisseria meningitidis strain M7918 
prokMSA_id:62778 AF398299 Neisseria meningitidis strain M7744 
prokMSA_id:62779 AF398297 Neisseria meningitidis strain M7741 
prokMSA_id:62780 AF398298 Neisseria meningitidis strain M7748 
prokMSA_id:62781 AF398296 Neisseria meningitidis strain M7740 
prokMSA_id:62782 AF398294 Neisseria meningitidis strain M7736 
prokMSA_id:62783 AF398295 Neisseria meningitidis strain M7737 
prokMSA_id:62784 AF398293 Neisseria meningitidis strain M7717 
prokMSA_id:62785 AF398292 Neisseria meningitidis strain M7714 
prokMSA_id:62786 AF398291 Neisseria meningitidis strain M7732 
prokMSA_id:62787 AF398290 Neisseria meningitidis strain M7727 
prokMSA_id:62789 AF398288 Neisseria meningitidis strain M7501 
prokMSA_id:62790 AF398287 Neisseria meningitidis strain M7510 
prokMSA_id:62791 AF398286 Neisseria meningitidis strain M1472 
prokMSA_id:62793 AF398284 Neisseria meningitidis strain M7448 
prokMSA_id:62794 AF398283 Neisseria meningitidis strain M2818 
prokMSA_id:62795 AF398282 Neisseria meningitidis strain M2531 
prokMSA_id:62796 AF398281 Neisseria meningitidis strain M4579 
prokMSA_id:62797 AF398280 Neisseria meningitidis strain M4361 
prokMSA_id:62798 AF398279 Neisseria meningitidis strain M1191 
prokMSA_id:62799 AF398278 Neisseria meningitidis strain M1169 
prokMSA_id:62800 AF398277 Neisseria meningitidis strain M4256 
prokMSA_id:62801 AF398276 Neisseria meningitidis strain M4207 
prokMSA_id:62802 AF398275 Neisseria meningitidis strain M812 
prokMSA_id:62803 AF398273 Neisseria meningitidis strain M1168 
prokMSA_id:62804 AF398274 Neisseria meningitidis strain M7541 
prokMSA_id:62805 AF398272 Neisseria meningitidis strain M7722 
prokMSA_id:62806 AF398271 Neisseria meningitidis strain M7719 
prokMSA_id:62807 AF398270 Neisseria meningitidis strain M7932 
prokMSA_id:62808 AF398269 Neisseria meningitidis strain M7924 
prokMSA_id:62809 AF398268 Neisseria meningitidis strain M7733 
prokMSA_id:62810 AF398267 Neisseria meningitidis strain M7920 
prokMSA_id:62811 AF398266 Neisseria meningitidis strain M7729 
prokMSA_id:62812 AF398264 Neisseria meningitidis strain M7723 
prokMSA_id:62813 AF398265 Neisseria meningitidis strain M7928 
prokMSA_id:62814 AF398263 Neisseria meningitidis strain M7743 
prokMSA_id:62815 AF398261 Neisseria meningitidis strain M7922 
prokMSA_id:62816 AF398259 Neisseria meningitidis strain M7725 
prokMSA_id:62817 AF398260 Neisseria meningitidis strain M7731 
prokMSA_id:62818 AF398258 Neisseria meningitidis strain M7930 
prokMSA_id:62819 AF398257 Neisseria meningitidis strain M4580 
prokMSA_id:62820 AF398256 Neisseria meningitidis strain M4219 
prokMSA_id:62821 AF398254 Neisseria meningitidis strain M5286 
prokMSA_id:62822 AF398255 Neisseria meningitidis strain M463 
prokMSA_id:62823 AF398253 Neisseria meningitidis strain M5285 
prokMSA_id:62824 AF398252 Neisseria meningitidis strain M5283 
prokMSA_id:62825 AF398250 Neisseria meningitidis strain M1402 
prokMSA_id:62826 AF398251 Neisseria meningitidis strain M4364 
prokMSA_id:62827 AF398249 Neisseria meningitidis strain M7926 
prokMSA_id:62828 AF398247 Neisseria meningitidis strain M4320 
prokMSA_id:62829 AF398243 Neisseria meningitidis strain M1110 
prokMSA_id:62830 AF398245 Neisseria meningitidis strain M3951 
prokMSA_id:62832 AF398242 Neisseria meningitidis strain M746 
prokMSA_id:65945 AF382316 Neisseria meningitidis strain M7927 
prokMSA_id:65946 AF382314 Neisseria meningitidis strain M8042 
prokMSA_id:65947 AF382313 Neisseria meningitidis strain M8031 
prokMSA_id:65948 AF382312 Neisseria meningitidis strain M8002 
prokMSA_id:65949 AF382311 Neisseria meningitidis strain M8001 
prokMSA_id:65950 AF382310 Neisseria meningitidis strain M8000 
prokMSA_id:65951 AF382309 Neisseria meningitidis strain M7999 
prokMSA_id:65952 AF382308 Neisseria meningitidis strain M7271 
prokMSA_id:65953 AF382307 Neisseria meningitidis strain M7925 
prokMSA_id:65954 AF382306 Neisseria meningitidis strain M7888 
prokMSA_id:65956 AF382304 Neisseria meningitidis strain M7894 
prokMSA_id:65957 AF382303 Neisseria meningitidis strain M7892 
prokMSA_id:65958 AF382302 Neisseria meningitidis strain M7855 
prokMSA_id:65962 AF382297 Neisseria meningitidis strain M7859 
prokMSA_id:65963 AF382296 Neisseria meningitidis strain M7858 
prokMSA_id:65964 AF382298 Neisseria meningitidis strain M7902 
prokMSA_id:65965 AF382295 Neisseria meningitidis strain M7905 
prokMSA_id:65967 AF382292 Neisseria meningitidis strain M7591 
prokMSA_id:65968 AF382291 Neisseria meningitidis strain M7590 
prokMSA_id:65969 AF382289 Neisseria meningitidis strain M7844 
prokMSA_id:65970 AF382288 Neisseria meningitidis strain M7843 
prokMSA_id:65971 AF382287 Neisseria meningitidis strain M7842 
prokMSA_id:65972 AF382285 Neisseria meningitidis strain M7801 
prokMSA_id:65973 AF382284 Neisseria meningitidis strain M7800 
prokMSA_id:65974 AF382283 Neisseria meningitidis strain M7799 
prokMSA_id:65975 AF382282 Neisseria meningitidis strain M7798 
prokMSA_id:65976 AF382281 Neisseria meningitidis strain M7797 
prokMSA_id:65977 AF382279 Neisseria meningitidis strain M7795 
prokMSA_id:65978 AF382280 Neisseria meningitidis strain M7796 
prokMSA_id:65979 AF382278 Neisseria meningitidis strain M7794 
prokMSA_id:65980 AF382277 Neisseria meningitidis strain M7542 
prokMSA_id:65981 AF382276 Neisseria meningitidis strain M7339 
prokMSA_id:65982 AF382275 Neisseria meningitidis strain M7221 
prokMSA_id:69100 AF293419 Neisseria gonorrhoeae ; tRNA-Ile and tRNA-Ala genes complete
prokMSA_id:69826 AF382247 Neisseria meningitidis strain M7904 
prokMSA_id:69849 AF310473 Neisseria meningitidis strain M7081B 
prokMSA_id:69850 AY132033 Neisseria meningitidis strain M9259 
prokMSA_id:69886 AF310462 Neisseria meningitidis strain M7184 
prokMSA_id:69897 AF382258 Neisseria meningitidis strain M8037 
prokMSA_id:69898 AF398241 Neisseria meningitidis strain M121 
prokMSA_id:69908 AY132085 Neisseria meningitidis strain M9097 
prokMSA_id:69912 AF310385 Neisseria meningitidis strain M3689 
prokMSA_id:69973 AF382269 Neisseria meningitidis strain M8048 
prokMSA_id:70026 AF382251 Neisseria meningitidis strain M8038 
prokMSA_id:70075 AF310427 Neisseria meningitidis strain M7152 
prokMSA_id:70081 AF310429 Neisseria meningitidis strain M7089B 
prokMSA_id:70134 AF310423 Neisseria meningitidis strain M7257 
prokMSA_id:70170 AF310408 Neisseria meningitidis strain M7034 
prokMSA_id:70238 AF382249 Neisseria meningitidis strain M8033 
prokMSA_id:70305 AF310468 Neisseria meningitidis strain M7134 
prokMSA_id:70307 AF398289 Neisseria meningitidis strain M7721 
prokMSA_id:70472 AF382261 Neisseria meningitidis strain M8076 
prokMSA_id:70564 AF382305 Neisseria meningitidis strain M7860 
prokMSA_id:70754 AF310387 Neisseria meningitidis strain M617 
prokMSA_id:70770 AF310345 Neisseria meningitidis strain M810 
prokMSA_id:70811 AF310407 Neisseria meningitidis strain M7035 
prokMSA_id:70849 AF310425 Neisseria meningitidis strain M7115 
prokMSA_id:70863 AF310388 Neisseria meningitidis strain M2836 
prokMSA_id:71082 AF337920 Neisseria meningitidis strain M2455 
prokMSA_id:71154 AF310426 Neisseria meningitidis strain M7142 
prokMSA_id:71179 AF382242 Neisseria meningitidis strain M7901 
prokMSA_id:71206 AF382270 Neisseria meningitidis strain M8074 
prokMSA_id:71211 AF310397 Neisseria meningitidis strain M2835 
prokMSA_id:71244 AF382271 Neisseria meningitidis strain M8073 
prokMSA_id:71245 AF382245 Neisseria meningitidis strain M7900 
prokMSA_id:71291 AF310394 Neisseria meningitidis strain M1441 
prokMSA_id:71555 AF382250 Neisseria meningitidis strain M8034 
prokMSA_id:71593 AF382268 Neisseria meningitidis strain M8047 
prokMSA_id:71622 AF382265 Neisseria meningitidis strain M8062 
prokMSA_id:71684 AF310417 Neisseria meningitidis strain M7149 
prokMSA_id:71784 AF382252 Neisseria meningitidis strain M8028 
prokMSA_id:71786 AF310471 Neisseria meningitidis strain M7107 
prokMSA_id:71788 AF382248 Neisseria meningitidis strain M7946 
prokMSA_id:71911 AF382254 Neisseria meningitidis strain M8065 
prokMSA_id:71988 AF310418 Neisseria meningitidis strain M7151 
prokMSA_id:72046 AF382257 Neisseria meningitidis strain M8036 
prokMSA_id:72067 AF310549 Neisseria meningitidis strain N111/88 
prokMSA_id:72115 AF398285 Neisseria meningitidis strain M4595 
prokMSA_id:72118 AF382243 Neisseria meningitidis strain M7903 
prokMSA_id:72141 AF382262 Neisseria meningitidis strain M8052 
prokMSA_id:72312 AF310386 Neisseria meningitidis strain M2829 
prokMSA_id:72331 AF382266 Neisseria meningitidis strain M8032 
prokMSA_id:72337 AF398315 Neisseria meningitidis strain M8172 
prokMSA_id:72407 AF310419 Neisseria meningitidis strain M7106 
prokMSA_id:72444 AF310545 Neisseria meningitidis strain M4648 
prokMSA_id:72478 AF409941 Neisseria meningitidis strain M1417 
prokMSA_id:72501 AY132149 Neisseria meningitidis strain M8588 
prokMSA_id:72577 AF382264 Neisseria meningitidis strain M8060 
prokMSA_id:72596 AF382253 Neisseria meningitidis strain M8064 
prokMSA_id:72662 AF382259 Neisseria meningitidis strain M8063 
prokMSA_id:72684 AF382244 Neisseria meningitidis strain M7895 
prokMSA_id:72700 AF310433 Neisseria meningitidis strain M7131 
prokMSA_id:72742 AY137380 Neisseria meningitidis strain N.1031/91 
prokMSA_id:72832 AF310432 Neisseria meningitidis strain M7156 
prokMSA_id:72910 AF382260 Neisseria meningitidis strain M8012 
prokMSA_id:72961 AF382274 Neisseria meningitidis strain M8066 
prokMSA_id:73067 AF382267 Neisseria meningitidis strain M8045 
prokMSA_id:73207 AF310467 Neisseria meningitidis strain M7150 
prokMSA_id:73234 AF310430 Neisseria meningitidis strain M7089A 
prokMSA_id:73248 AF310420 Neisseria meningitidis strain M7105 
prokMSA_id:73314 AF382273 Neisseria meningitidis strain M8067 
prokMSA_id:73343 AF337917 Neisseria meningitidis strain M2459 
prokMSA_id:73383 AF382241 Neisseria meningitidis strain M7857 
prokMSA_id:73420 AF310557 Neisseria meningitidis strain M1531 
prokMSA_id:73440 AF382246 Neisseria meningitidis strain M7887 
prokMSA_id:73441 AF382240 Neisseria meningitidis strain M7854 
prokMSA_id:73533 AF337916 Neisseria meningitidis strain M2371 
prokMSA_id:73542 AF310422 Neisseria meningitidis strain M7123 
prokMSA_id:73554 AF310406 Neisseria meningitidis strain M7153 
prokMSA_id:73654 AF382255 Neisseria meningitidis strain M8049 
prokMSA_id:73972 AF337919 Neisseria meningitidis strain M2377 
prokMSA_id:73999 AF310421 Neisseria meningitidis strain M7104 
prokMSA_id:74070 AF398314 Neisseria meningitidis strain M8171 
prokMSA_id:74147 AF310396 Neisseria meningitidis strain M680 
prokMSA_id:74156 AF310428 Neisseria meningitidis strain M7212 
prokMSA_id:74188 AF382263 Neisseria meningitidis strain M8053 
prokMSA_id:74217 AF310472 Neisseria meningitidis strain M7085 
prokMSA_id:74287 AF310442 Neisseria meningitidis strain M7322 
prokMSA_id:74320 AF310431 Neisseria meningitidis strain M7124 
prokMSA_id:74344 AF310463 Neisseria meningitidis strain M7187 
prokMSA_id:74346 AF382272 Neisseria meningitidis strain M8068 
prokMSA_id:74362 AF310424 Neisseria meningitidis strain M7213 
prokMSA_id:74427 AF382256 Neisseria meningitidis strain M8051 
prokMSA_id:74639 AY132074 Neisseria meningitidis strain M9238 
prokMSA_id:74719 AF310609 Neisseria meningitidis strain M1154 
prokMSA_id:74729 AF382315 Neisseria meningitidis strain M8075 
prokMSA_id:74919 AY150572 Neisseria meningitidis strain N.113/00 
prokMSA_id:74921 AY150573 Neisseria meningitidis strain N.995/01 
prokMSA_id:75010 AY146977 Neisseria meningitidis strain N.1043/01 
prokMSA_id:75573 AY150570 Neisseria meningitidis strain N.02/01 
prokMSA_id:75870 AY146970 Neisseria meningitidis strain N.381/92 
prokMSA_id:76018 AY146971 Neisseria meningitidis strain N.195/91 
prokMSA_id:76052 AY146976 Neisseria meningitidis strain N.394/99 
prokMSA_id:76096 AY146972 Neisseria meningitidis strain N.1080/94 
prokMSA_id:76241 AY146973 Neisseria meningitidis strain N.374/96 
prokMSA_id:76592 AY150574 Neisseria meningitidis strain N.483/00 
prokMSA_id:76597 AY146969 Neisseria meningitidis strain N.1101/95 
prokMSA_id:76992 AY146975 Neisseria meningitidis strain N.221/91 
prokMSA_id:77012 AY150571 Neisseria meningitidis strain N.539/95 
prokMSA_id:77115 AY146978 Neisseria meningitidis strain N.451/91 
prokMSA_id:77133 AY146974 Neisseria meningitidis strain N.188/91 
prokMSA_id:78528 AY176646 Neisseria meningitidis strain N.1180/95 
2.28.2.1.9.42655 OTU 12 seqs
prokMSA_id:6401 AJ239282 Neisseria mucosa str. LNP405
prokMSA_id:6437 AJ239281 Neisseria pharyngis NCTC 4590
prokMSA_id:6441 AJ239292 Neisseria sicca str. Q13
prokMSA_id:6442 AJ239293 Neisseria sicca str. Q28
prokMSA_id:6443 AJ239294 Neisseria sicca str. Q29
prokMSA_id:6447 AJ239301 Neisseria flava str. U40
prokMSA_id:6466 AJ239285 Neisseria lactamica str. L22
prokMSA_id:6468 AJ239296 Neisseria lactamica str. L19
prokMSA_id:6470 AJ239305 Neisseria lactamica str. L13
prokMSA_id:6472 AJ239314 Neisseria polysaccharea str. P7
prokMSA_id:18996 AY005026 Neisseria sp. oral clone AP060 
prokMSA_id:39650 AY005027 Neisseria sp. oral clone AP132 
2.28.2.1.99 VARIOUS 2 seqs
2.28.2.1.99.34157 OTU 2 seqs
prokMSA_id:25162 AF328156 Simonsiella steedae strain ATCC29457 
prokMSA_id:56599 AB087261 Simonsiella steedae strain:IAM 14972
2.28.2.3 METHYLOPHILUS_GROUP 9 seqs
2.28.2.3.10657 OTU 1 seq
prokMSA_id:37301 AB027139 Methylobacillus sp. 12S 
2.28.2.3.11791 OTU 1 seq
prokMSA_id:29664 AJ400352 marine ZD0412 
2.28.2.3.15045 OTU 1 seq
prokMSA_id:24165 AJ318162 beta clone BIqi38
2.28.2.3.16172 OTU 1 seq
prokMSA_id:17116 AJ318113 beta clone BIci31
2.28.2.3.21126 OTU 1 seq
prokMSA_id:71394 AJ517772 Methylophilus freyburgensis strain I 42T
2.28.2.3.27286 OTU 2 seqs
prokMSA_id:6485 U70704 clone OM43
prokMSA_id:48715 AJ400339 marine ZD0202 
2.28.2.3.6607 OTU 1 seq
prokMSA_id:50624 AJ318156 beta clone BIki2
2.28.2.3.8905 OTU 1 seq
prokMSA_id:75025 AJ534622 beta clone JG36-TzT-50
2.28.2.4 NITROSOMONAS_GROUP 80 seqs
2.28.2.4.1 GALLIONELLA_ASSEMBLAGE 3 seqs
2.28.2.4.1.20068 OTU 1 seq
prokMSA_id:6494 L07897 Gallionella ferruginea str. stock Johan
2.28.2.4.1.7895 OTU 1 seq
prokMSA_id:42997 AY013698 Banisveld landfill BVC12 
2.28.2.4.1.8172 OTU 1 seq
prokMSA_id:21368 AY050584 clone GOUTA12 
2.28.2.4.3 NSS.MULTIFORMIS_SUBGROUP 23 seqs
2.28.2.4.3.10048 OTU 1 seq
prokMSA_id:43839 AF363290 Nitrosovibrio sp. RY3C 
2.28.2.4.3.10694 OTU 1 seq
prokMSA_id:74628 AY123811 Nitrosomonas sp. Nm59 
2.28.2.4.3.15275 OTU 1 seq
prokMSA_id:53680 AJ298736 Nitrosomonas oligotropha isolate Nm45
2.28.2.4.3.15697 OTU 1 seq
prokMSA_id:47151 AF289159 beta clone PRD01a011B 
2.28.2.4.3.18017 OTU 1 seq
prokMSA_id:70311 AF289172 beta clone PRD01b012B 
2.28.2.4.3.19300 OTU 1 seq
prokMSA_id:16969 AF353297 Tui3-12 
2.28.2.4.3.20763 OTU 1 seq
prokMSA_id:78574 AJ536880 clone JG30-KF-AS41
2.28.2.4.3.20748 OTU 1 seq
prokMSA_id:6524 U85120 clone ACK-C30
2.28.2.4.3.20785 OTU 1 seq
prokMSA_id:6535 AF080256 Nitrosovibrio TYM9 str. TYM9
2.28.2.4.3.20900 OTU 1 seq
prokMSA_id:6587 Z99999 str. LD28
2.28.2.4.3.3222 OTU 1 seq
prokMSA_id:43046 AF204242 beta GC152 
2.28.2.4.3.32577 OTU 2 seqs
prokMSA_id:38503 AF272421 Nitrosomonas sp. NM 41 
prokMSA_id:73796 AY123799 Nitrosomonas sp. Nm58 
2.28.2.4.3.34844 OTU 2 seqs
prokMSA_id:69916 AY123797 Nitrosomonas sp. Nm84 
prokMSA_id:72194 AY123789 Nitrosospira sp. Nsp58 
2.28.2.4.3.3785 OTU 1 seq
prokMSA_id:19603 AF204250 beta SBR1021 
2.28.2.4.3.3850 OTU 1 seq
prokMSA_id:19644 AF407390 clone Ra9C4 
2.28.2.4.3.42613 OTU 4 seqs
prokMSA_id:6589 M96404 Nitrosospira tenuis str. Nv1
prokMSA_id:6600 X84658 Nitrosospira sp. str. AF
prokMSA_id:69463 AY123803 Nitrosovibrio tenuis 
prokMSA_id:73957 AY123788 Nitrosospira sp. Nsp41 
2.28.2.4.3.6571 OTU 1 seq
prokMSA_id:44054 AF353157 Nitrosovibrio sp. E12 
2.28.2.4.3.7527 OTU 1 seq
prokMSA_id:74278 AY123798 Nitrosomonas sp. Nm80 
2.28.2.4.4 NMN.COMMUNIS_SUBGROUP 4 seqs
2.28.2.4.4.16834 OTU 1 seq
prokMSA_id:78042 AJ298740 Nitrosomonas nitrosa isolate Nm90
2.28.2.4.4.39553 OTU 3 seqs
prokMSA_id:29401 AJ298733 Nitrosomonas sp. Nm33 isolate Nm33
prokMSA_id:35231 AF272417 Nitrosomonas communis 
prokMSA_id:48601 AJ298732 Nitrosomonas communis isolate Nm2
2.28.2.4.6 NMN.EUROPAEA_SUBGROUP 38 seqs
2.28.2.4.6.11681 OTU 1 seq
prokMSA_id:74794 AY123792 Nitrosomonas sp. Nm148 
2.28.2.4.6.17321 OTU 1 seq
prokMSA_id:40156 AF363289 Nitrosomonas sp. K1 
2.28.2.4.6.21588 OTU 1 seq
prokMSA_id:6650 AJ224941 Nitrosomonas sp. str. Koll-21
2.28.2.4.6.2292 OTU 1 seq
prokMSA_id:27293 AF363293 Nitrosomonas sp. IWT514 
2.28.2.4.6.25543 OTU 2 seqs
prokMSA_id:22792 AF353164 Nitrosomonas sp. DYS323 
prokMSA_id:50735 AF363292 Nitrosomonas sp. DYS317 
2.28.2.4.6.28566 OTU 5 seqs
prokMSA_id:18718 AY026317 Ammonia-oxidizing ANs5 
prokMSA_id:28347 AY026313 Ammonia-oxidizing An1 
prokMSA_id:40532 AY026314 Ammonia-oxidizing ANs2 
prokMSA_id:48996 AY026316 Ammonia-oxidizing ANs4 
prokMSA_id:52558 AY026315 Ammonia-oxidizing ANs3 
2.28.2.4.6.34291 OTU 7 seqs
prokMSA_id:6648 AF037105 str. M93
prokMSA_id:16548 AF272416 Nitrosomonas sp. NM 107 
prokMSA_id:18274 AF272415 Nitrosomonas sp. NM 104 
prokMSA_id:26294 AJ298728 Nitrosococcus mobilis isolate Nc2
prokMSA_id:26740 AF386747 Nitrosomonas sp. BF16c52 
prokMSA_id:29792 AF287297 Nitrosococcus mobilis Nc2 
prokMSA_id:51394 AF353159 Nitrosomonas sp. TNO632 
2.28.2.4.6.38946 OTU 8 seqs
prokMSA_id:6643 AB000702 Nitrosomonas sp. str. HPC101
prokMSA_id:6651 AF080185 Nitrosomonas TK794 str. TK794
prokMSA_id:21019 AB031960 Nitrosomonas sp. TK794 
prokMSA_id:30994 AJ011920 Nitrosomonas sp. isolate F6
prokMSA_id:33364 AJ298739 Nitrosomonas eutropha isolate Nm57
prokMSA_id:44831 AF353161 Nitrosomonas sp. CNS326 
prokMSA_id:47242 AF353155 Nitrosomonas sp. G1 
prokMSA_id:69328 AY123795 Nitrosomonas eutropha 
2.28.2.4.6.39807 OTU 5 seqs
prokMSA_id:6649 AF037106 Nitrosomonas europaea str. M103
prokMSA_id:46231 AF353160 Nitrosomonas europaea 
prokMSA_id:53386 AB079053 Nitrosomonas sp. ENI-11 
prokMSA_id:76457 AB070982 Nitrosomonas europaea strain: ATCC25978
prokMSA_id:77085 AB070983 Nitrosomonas europaea strain: ATCC19178
2.28.2.4.6.40017 OTU 4 seqs
prokMSA_id:17110 AF386748 Nitrosomonas sp. R3c12 
prokMSA_id:32428 AF386749 Nitrosomonas sp. R5c47 
prokMSA_id:38270 AF386750 Nitrosomonas sp. R5c88 
prokMSA_id:58032 AB093545 Nitrosomonas sp. B2 
2.28.2.4.6.42773 OTU 2 seqs
prokMSA_id:71515 AJ431351 Nitrosomonas sp. isolate ikaite un-c25
prokMSA_id:78355 AJ298731 Nitrosomonas halophila isolate Nm1
2.28.2.4.6.9658 OTU 1 seq
prokMSA_id:82338 AY135356 Ammonia-oxidizing NS500-9 
2.28.2.4.7 NMN.MARINA_SUBGROUP 10 seqs
2.28.2.4.7.17722 OTU 1 seq
prokMSA_id:16711 AF272418 Nitrosomonas marina 
2.28.2.4.7.30521 OTU 2 seqs
prokMSA_id:35222 AF386752 Nitrosomonas sp. R7c131 
prokMSA_id:37793 AF386753 Nitrosomonas sp. R7c140 
2.28.2.4.7.3472 OTU 1 seq
prokMSA_id:28030 AF386757 Nitrosomonas sp. R7c187 
2.28.2.4.7.41729 OTU 3 seqs
prokMSA_id:17356 AF272424 Nitrosomonas sp. NM 51 
prokMSA_id:27445 AF272420 Nitrosomonas aestuarii 
prokMSA_id:46778 AF386746 Nitrosomonas sp. BF16c57 
2.28.2.4.7.42515 OTU 2 seqs
prokMSA_id:6661 M96400 Nitrosomonas marina str. C-56; Nm63
prokMSA_id:52630 AJ298737 Nitrosomonas sp. Nm51 isolate Nm51
2.28.2.4.7.9041 OTU 1 seq
prokMSA_id:44323 AJ298734 Nitrosomonas aestuarii isolate Nm36
2.28.2.4.99 VARIOUS 2 seqs
2.28.2.4.99.37684 OTU 2 seqs
prokMSA_id:20247 AJ298738 Nitrosomonas cryotolerans isolate Nm55
prokMSA_id:49524 AF272423 Nitrosomonas cryotolerans 
2.28.2.5 AZOARCUS_GROUP 209 seqs
2.28.2.5.2 HGH.THERMOLUTEOLUS_SUBGROUP 23 seqs
2.28.2.5.2.13863 OTU 1 seq
prokMSA_id:29990 AF280826 tbr1-14 
2.28.2.5.2.15767 OTU 1 seq
prokMSA_id:69403 AF236014 Beta F06002 
2.28.2.5.2.17254 OTU 1 seq
prokMSA_id:40122 AF402975 Hydrogenophilus sp. clone 
2.28.2.5.2.21613 OTU 1 seq
prokMSA_id:6673 AF011346 Azoarcus sp. str. S5b2
2.28.2.5.2.21614 OTU 1 seq
prokMSA_id:6675 AF011349 Azoarcus BS20-3 str. BS20-3
2.28.2.5.2.32343 OTU 2 seqs
prokMSA_id:6678 AB009828 Hydrogenophilus thermoluteolus str. TH-1
prokMSA_id:6684 AB009829 Hydrogenophilus thermoluteolus str. TH-4
2.28.2.5.2.33347 OTU 2 seqs
prokMSA_id:34315 AF445689 beta clone SM1E12 
prokMSA_id:41556 AF445741 beta clone SM2G09 
2.28.2.5.2.35172 OTU 10 seqs
prokMSA_id:6685 AB015328 str. HMD444
prokMSA_id:21915 AF280851 mle1-14 
prokMSA_id:45235 AF280842 mle1-3 
prokMSA_id:50274 AF280827 tbr4-2 
prokMSA_id:70430 AF280821 tbr1-3 
prokMSA_id:70657 AF280828 tbr4-5 
prokMSA_id:70880 AF280822 tbr1-4 
prokMSA_id:72026 AF280864 mle1-43 
prokMSA_id:72616 AF280835 tbr4-67 
prokMSA_id:73564 AF280833 tbr4-24 
2.28.2.5.2.4271 OTU 1 seq
prokMSA_id:72619 AF280830 tbr4-10 
2.28.2.5.2.5335 OTU 1 seq
prokMSA_id:72763 AF280860 mle1-32 
2.28.2.5.2.7030 OTU 1 seq
prokMSA_id:29097 AF280832 tbr4-23 
2.28.2.5.2.8155 OTU 1 seq
prokMSA_id:51448 AF352386 Candidatus Procabacter sp. TUMSJ-341 
2.28.2.5.3 DCL.AGITATUS_SUBGROUP 21 seqs
2.28.2.5.3.10281 OTU 1 seq
prokMSA_id:29482 AY007722 Cardococcus australiensis 
2.28.2.5.3.12433 OTU 1 seq
prokMSA_id:59895 AY133101 beta clone ccspost2132 
2.28.2.5.3.13349 OTU 1 seq
prokMSA_id:60588 AF407711 clone G94 
2.28.2.5.3.14539 OTU 1 seq
prokMSA_id:60760 AY126452 Dechloromonas sp. PC1 
2.28.2.5.3.14704 OTU 1 seq
prokMSA_id:39167 AJ422172 beta clone Spb272
2.28.2.5.3.15058 OTU 1 seq
prokMSA_id:60817 AY118150 beta clone Cart-N1 
2.28.2.5.3.19137 OTU 1 seq
prokMSA_id:17553 AF280846 mle1-7 
2.28.2.5.3.21643 OTU 1 seq
prokMSA_id:6699 AJ009452 clone SJA-10
2.28.2.5.3.4017 OTU 1 seq
prokMSA_id:43118 AF245350 SA35 
2.28.2.5.3.42222 OTU 9 seqs
prokMSA_id:6706 Y17060 Ferribacterium limneticum str. cda-1
prokMSA_id:29770 AY032610 Dechloromonas sp. RCB 
prokMSA_id:59909 AY133087 beta clone ccslm218 
prokMSA_id:59918 AY133075 Rhodocyclaceae clone ccs296 
prokMSA_id:59921 AY133076 Rhodocyclaceae clone ccs272 
prokMSA_id:59931 AY133067 Rhodocyclaceae clone ccs2105 
prokMSA_id:59933 AY133066 Rhodocyclaceae clone ccs203 
prokMSA_id:61806 AF529359 Beta AC1 
prokMSA_id:62388 AF529131 beta clone FTLpost11 
2.28.2.5.3.5071 OTU 1 seq
prokMSA_id:50481 AF204246 beta SBRH147 
2.28.2.5.3.6031 OTU 1 seq
prokMSA_id:72807 AF479766 Dechloromonas sp. HZ ; -23S intergenic spacer complete and 2
2.28.2.5.3.6392 OTU 1 seq
prokMSA_id:34983 AF351229 beta clone 4-21 
2.28.2.5.5 RCY.TENUIS_SUBGROUP 57 seqs
2.28.2.5.5.10690 OTU 1 seq
prokMSA_id:81843 AY214205 clone ZZ15C5 
2.28.2.5.5.12288 OTU 1 seq
prokMSA_id:36918 AJ252651 Agricultural soil clone SC-I-71 
2.28.2.5.5.12493 OTU 1 seq
prokMSA_id:30390 AY062126 beta clone UCT N141 
2.28.2.5.5.12975 OTU 1 seq
prokMSA_id:74988 AJ519624 beta clone Sh765B-TzT-132
2.28.2.5.5.13367 OTU 1 seq
prokMSA_id:69019 AF351236 beta clone 8-5 
2.28.2.5.5.13733 OTU 1 seq
prokMSA_id:67834 AY082472 beta clone 44a-B2-3 
2.28.2.5.5.13892 OTU 1 seq
prokMSA_id:54073 AB062831 clone:BCf6-08
2.28.2.5.5.16410 OTU 1 seq
prokMSA_id:76735 AJ534659 beta clone S15A-MN34
2.28.2.5.5.17133 OTU 1 seq
prokMSA_id:76846 AJ534661 beta clone S15A-MN28
2.28.2.5.5.17489 OTU 1 seq
prokMSA_id:61822 AF529340 beta clone CLi64 
2.28.2.5.5.18481 OTU 1 seq
prokMSA_id:17475 AY013696 Banisveld landfill BVC47 
2.28.2.5.5.20562 OTU 1 seq
prokMSA_id:25562 AF371865 clone p-2552-9F5 
2.28.2.5.5.2176 OTU 1 seq
prokMSA_id:27267 AF423222 soil clone 1326-2 
2.28.2.5.5.241 OTU 1 seq
prokMSA_id:6713 D16209 Rhodocyclus tenuis str. 3760 DSM 110
2.28.2.5.5.247 OTU 1 seq
prokMSA_id:6717 AF016690 Propionibacter pelophilus str. asp 66
2.28.2.5.5.265 OTU 1 seq
prokMSA_id:6720 AJ009484 clone SJA-109
2.28.2.5.5.266 OTU 1 seq
prokMSA_id:6721 Y17601 Propionivibrio dicarboxylicus DSM 5885
2.28.2.5.5.2946 OTU 1 seq
prokMSA_id:64665 AJ316618 Thiobacillus plumbophilus strain DSM 6690
2.28.2.5.5.30056 OTU 2 seqs
prokMSA_id:26639 AF227840 str. 51885 
prokMSA_id:38455 AY005031 Beta sp. oral strain A08KA 
2.28.2.5.5.31209 OTU 2 seqs
prokMSA_id:6712 D16210 Rhodocyclus tenuis str. SW18
prokMSA_id:6718 D16208 Rhodocyclus tenuis str. 2761 DSM 109
2.28.2.5.5.33873 OTU 2 seqs
prokMSA_id:59340 AF502230 clone HP1A31 
prokMSA_id:73861 AF204247 beta SBRB34 
2.28.2.5.5.34517 OTU 14 seqs
prokMSA_id:6714 AF011347 Azoarcus 6a3 str. 6a3
prokMSA_id:6715 AF011351 Azoarcus BS2-3 str. BS2-3
prokMSA_id:6716 AF170350 Dechlorisoma Iso1 str. Iso1
prokMSA_id:6719 AJ009466 clone SJA-52
prokMSA_id:6722 AF170348 Dechlorisoma suilla str. PS
prokMSA_id:6723 AF170349 Dechlorisoma SDGM str. SDGM
prokMSA_id:6724 AF170351 Dechlorisoma Iso2 str. Iso2
prokMSA_id:35442 AF323490 Dechlorosoma sp. PDX 
prokMSA_id:35520 AF323491 Dechlorosoma sp. KJ 
prokMSA_id:41031 AF427953 clone 5D 
prokMSA_id:59899 AY133096 beta clone ccslm36 
prokMSA_id:60759 AY126453 Dechlorosoma sp. PCC 
prokMSA_id:76627 AJ534664 beta clone S15A-MN2
prokMSA_id:77054 AJ534663 beta clone S15A-MN6
2.28.2.5.5.34847 OTU 3 seqs
prokMSA_id:36331 AF255631 beta clone Ebpr16 
prokMSA_id:45179 AF245349 SA34 
prokMSA_id:52088 AY062125 beta clone UCT N032 
2.28.2.5.5.41410 OTU 6 seqs
prokMSA_id:6725 AJ224937 Rhodocyclus sp. str. R6
prokMSA_id:36416 AF204244 beta SBRA220 
prokMSA_id:41872 AF314417 PHOS-HC05 
prokMSA_id:55551 AF502225 clone HP1B23 
prokMSA_id:59336 AF502232 clone HP1B54 
prokMSA_id:59343 AF502224 clone HP1A13 
2.28.2.5.5.42464 OTU 4 seqs
prokMSA_id:59337 AF502231 clone HP1A26 
prokMSA_id:59339 AF502228 clone HP1A21 
prokMSA_id:59341 AF502227 clone HP1B75 
prokMSA_id:59342 AF502226 clone HP1A50 
2.28.2.5.5.4455 OTU 1 seq
prokMSA_id:42580 T AJ307983 Propionivibrio limicola strain GolChi1
2.28.2.5.5.4581 OTU 1 seq
prokMSA_id:65492 AY064179 beta clone UCT N173 
2.28.2.5.5.4585 OTU 1 seq
prokMSA_id:65494 AY064177 beta clone UCT N123 
2.28.2.5.5.4583 OTU 1 seq
prokMSA_id:65493 AY064178 beta clone UCT N161 
2.28.2.5.5.8601 OTU 1 seq
prokMSA_id:59338 AF502229 clone HP1A49 
2.28.2.5.5.9143 OTU 1 seq
prokMSA_id:44355 AF387301 Iron-oxidizing acidophile m-1 
2.28.2.5.6 DG.ZOOGLOEOIDES_SUBGROUP_II 14 seqs
2.28.2.5.6.17597 OTU 1 seq
prokMSA_id:17331 AJ421928 beta clone Elb168
2.28.2.5.6.296 OTU 1 seq
prokMSA_id:6735 AJ009455 clone SJA-21
2.28.2.5.6.299 OTU 1 seq
prokMSA_id:6738 AJ011506 Zoogloea DhA-35 str. DhA-35
2.28.2.5.6.31229 OTU 2 seqs
prokMSA_id:6731 D14254 Duganella zoogloeoides IAM 12136
prokMSA_id:6732 D14257 Duganella zoogloeoides str. 235 N.C. Dondero ATCC 19324
2.28.2.5.6.41212 OTU 2 seqs
prokMSA_id:59335 AF502233 clone HP1A03 
prokMSA_id:73258 AF527582 clone LPB19 
2.28.2.5.6.41644 OTU 4 seqs
prokMSA_id:70359 AJ505854 Zoogloea resiniphila strain PIV-3C2y
prokMSA_id:70483 AJ505851 Zoogloea resiniphila strain PIV-3A2w
prokMSA_id:72759 AJ505853 Zoogloea resiniphila strain PIV-3C2w
prokMSA_id:73489 AJ505852 Zoogloea resiniphila strain PIV-3A2y
2.28.2.5.6.42637 OTU 3 seqs
prokMSA_id:22275 AF234726 sludge A16 
prokMSA_id:34086 AF314418 PHOS-HC20 
prokMSA_id:37845 AF234704 sludge H40 
2.28.2.5.7 THA.AROMATICA_SUBGROUP 31 seqs
2.28.2.5.7.15027 OTU 1 seq
prokMSA_id:30710 AF351219 beta clone 36-9 
2.28.2.5.7.18028 OTU 1 seq
prokMSA_id:40231 AJ296553 GR-WP33-36 clone GR-WP33-36
2.28.2.5.7.2031 OTU 1 seq
prokMSA_id:42293 AF229867 Thauera aromatica strain 4FB1 
2.28.2.5.7.2259 OTU 1 seq
prokMSA_id:27286 AJ306683 Sterolibacterium denitrificans strain Chol-1S
2.28.2.5.7.314 OTU 1 seq
prokMSA_id:6747 AJ005816 Thauera linaloolentis str. 47Lol DSM 12138
2.28.2.5.7.316 OTU 1 seq
prokMSA_id:6749 Y09967 str. 72Chol
2.28.2.5.7.327 OTU 1 seq
prokMSA_id:6754 AJ007007 Azoarcus sp. str. LU1
2.28.2.5.7.32799 OTU 3 seqs
prokMSA_id:6750 AJ005817 Thauera terpenica str. 58Eu DSM 12139
prokMSA_id:6752 AJ005818 Thauera terpenica str. 21Mol
prokMSA_id:6753 Y17285 str. pCyN2
2.28.2.5.7.34354 OTU 2 seqs
prokMSA_id:23140 AF407394 clone RB9C3 
prokMSA_id:56113 AY133069 beta clone ccs214 
2.28.2.5.7.40571 OTU 5 seqs
prokMSA_id:6758 AF110005 Thauera mz1t str. mz1t
prokMSA_id:25264 AJ315678 Thauera sp. B4P strain B4P
prokMSA_id:40990 AJ315677 Thauera sp. S2 strain S2
prokMSA_id:63593 AB066262 Thauera sp. DNT-1 
prokMSA_id:70860 AF170281 Thauera aromatica 
2.28.2.5.7.41341 OTU 11 seqs
prokMSA_id:6755 X64373 clone AX39
prokMSA_id:6756 X68491 Thauera selenatis str. Ax ATCC 55363
prokMSA_id:6757 X77118 Thauera aromatica str. K172 clone K1 DSM 6984
prokMSA_id:6760 X83533 Azoarcus mXyN1 str. mXyN1
prokMSA_id:6762 Y17591 Thauera selenatis str. Ax ATCC 55363
prokMSA_id:6763 U95176 Thauera T1 str. T1
prokMSA_id:22130 AJ315680 Thauera aromatica strain LG356
prokMSA_id:23705 AF229881 Thauera aromatica strain 3CB2 
prokMSA_id:27601 AJ315679 Thauera aromatica strain SP
prokMSA_id:38171 AF204254 beta SBR1022 
prokMSA_id:44747 AJ315681 Thauera aromatica strain S100
2.28.2.5.7.42711 OTU 2 seqs
prokMSA_id:6759 AF123264 Thauera aromatica str. 3CB-1
prokMSA_id:6761 Y17590 Thauera mechernichii str. TL1
2.28.2.5.7.864 OTU 1 seq
prokMSA_id:18623 AF229868 Thauera aromatica strain 4FB2 
2.28.2.5.8 AZC.INDIGENS_SUBGROUP 58 seqs
2.28.2.5.8.1005 OTU 1 seq
prokMSA_id:6802 AF011344 Azoarcus BH72 str. BH72
2.28.2.5.8.12848 OTU 1 seq
prokMSA_id:75583 AJ518782 beta clone JG37-AG-35
2.28.2.5.8.13008 OTU 1 seq
prokMSA_id:59905 AY133089 gamma clone ccslm229 
2.28.2.5.8.14105 OTU 1 seq
prokMSA_id:45625 AF204249 beta SBR1009 
2.28.2.5.8.28899 OTU 3 seqs
prokMSA_id:31185 AF204243 beta GC24 
prokMSA_id:32687 AF204252 beta SBR1001 
prokMSA_id:48813 AF204251 beta SBR2080 
2.28.2.5.8.31814 OTU 7 seqs
prokMSA_id:6786 AF072918 clone S3
prokMSA_id:6787 AF072919 clone H25
prokMSA_id:6789 AF072925 clone A2-33
prokMSA_id:6799 AF072921 clone S23
prokMSA_id:6800 AF072924 clone H30
prokMSA_id:47981 AF234732 sludge H35 
prokMSA_id:49117 AF234762 sludge S10 
2.28.2.5.8.34772 OTU 29 seqs
prokMSA_id:6766 L33688 Azoarcus denitrificians str. Td-15
prokMSA_id:6769 AF011328 Azoarcus CR23 str. CR23
prokMSA_id:6770 AF011329 Azoarcus PH002 str. PH002
prokMSA_id:6771 Y13222 Azoarcus 22Lin str. 22Lin
prokMSA_id:6774 X83532 Azoarcus PbN1 str. PbN1
prokMSA_id:6775 L33694 Azoarcus tolulyticus str. Tol-4
prokMSA_id:6776 Y11040 Azoarcus sp. str. M3
prokMSA_id:6777 Y11041 Azoarcus sp. str. M3
prokMSA_id:6778 AF123075 Azoarcus tolulyticus str. BL11
prokMSA_id:6779 AF123076 Azoarcus toluclasticus str. MF7
prokMSA_id:6780 AF123077 Azoarcus toluclasticus str. MF63
prokMSA_id:6782 L33693 Azoarcus denitrificians str. Td-3
prokMSA_id:6785 X77679 Azoarcus evansii str. KB740 DSM 6898
prokMSA_id:6791 X83534 Azoarcus ToN1 str. ToN1
prokMSA_id:6795 U44853 Azoarcus sp. str. pF6
prokMSA_id:6796 AF011330 Azoarcus FL05 str. FL05
prokMSA_id:6797 AF129465 Azoarcus T str. T
prokMSA_id:6804 L33687 Azoarcus denitrificians str. Td-1
prokMSA_id:6805 U82665 Azoarcus tolulyticus str. XQ3
prokMSA_id:6807 L33690 Azoarcus denitrificians str. Td-19
prokMSA_id:6809 L33691 Azoarcus denitrificians str. Td-2
prokMSA_id:30791 AF229876 Azoarcus tolulyticus strain 4FB10 
prokMSA_id:35148 AF229861 Azoarcus tolulyticus strain 2FB6 
prokMSA_id:44225 AB033745 Azoarcus sp. CC-11 
prokMSA_id:49535 AF395431 Eub No. 21 
prokMSA_id:59917 AY133073 beta clone ccs250 
prokMSA_id:59923 AY133068 beta clone ccs2133 
prokMSA_id:64547 AF515816 Azoarcus sp. CIB 
prokMSA_id:66959 AF482683 Azoarcus sp. HA 
2.28.2.5.8.358 OTU 1 seq
prokMSA_id:6772 U58019 Thiobacillus aquaesulis
2.28.2.5.8.386 OTU 1 seq
prokMSA_id:6783 AF011343 Azoarcus communis str. SWub3 DSM 12120
2.28.2.5.8.403 OTU 1 seq
prokMSA_id:6792 AF011345 Azoarcus indigens str. VB32 LMG 9092
2.28.2.5.8.404 OTU 1 seq
prokMSA_id:6793 U46748 str. OS isolate ac-16
2.28.2.5.8.405 OTU 1 seq
prokMSA_id:6794 AF026985 clone OPB37
2.28.2.5.8.40932 OTU 5 seqs
prokMSA_id:6767 Y14701 Azoarcus anaerobius str. LuFRes1 DSM 12081
prokMSA_id:6768 Y17284 str. pCyN1
prokMSA_id:6773 X83531 Azoarcus EbN1 str. EbN1
prokMSA_id:39189 AJ315676 Azoarcus buckelii strain U120
prokMSA_id:66610 AF331975 Azoarcus sp. HxN1 
2.28.2.5.8.42719 OTU 2 seqs
prokMSA_id:6781 L33689 Azoarcus denitrificians str. Td-17
prokMSA_id:6784 L33692 Azoarcus denitrificians str. Td-21
2.28.2.5.8.5669 OTU 1 seq
prokMSA_id:74001 AF423284 soil clone 646-2 
2.28.2.5.8.8649 OTU 1 seq
prokMSA_id:29264 AF352385 Candidatus Procabacter sp. TUMSJ-226 
2.28.2.5.8.9718 OTU 1 seq
prokMSA_id:21532 AB024934 Sphingomonas sp. A1 
2.28.2.5.99 VARIOUS 5 seqs
2.28.2.5.99.40162 OTU 3 seqs
prokMSA_id:37585 AF177427 Candidatus Procabacter acanthamoebae 
prokMSA_id:45071 AF177424 Candidatus Procabacter sp. UWE2 
prokMSA_id:52040 AF177426 Candidatus Procabacter sp. UWC6 
2.28.2.5.99.42598 OTU 2 seqs
prokMSA_id:66585 AF503539 Beta TW2 
prokMSA_id:77627 AY171616 Dechlorosoma sp. AH 
2.28.2.8 BORDETELLA_GROUP 136 seqs
2.28.2.8.1 LAU.MIRABILIS_SUBGROUP 5 seqs
2.28.2.8.1.32117 OTU 3 seqs
prokMSA_id:6819 X73223 Lautropia mirabilis str. AB2188 NCTC 12852
prokMSA_id:26684 AY053478 AT425_EubA4 
prokMSA_id:74332 AY005030 Lautropia sp. oral clone AP009 
2.28.2.8.1.4653 OTU 1 seq
prokMSA_id:64876 AJ412672 clone 3
2.28.2.8.1.9172 OTU 1 seq
prokMSA_id:81664 AY218566 clone KD1-79 
2.28.2.8.2 SUT.WADSWORTHENSIS_SUBGROUP 2 seqs
2.28.2.8.2.27594 OTU 2 seqs
prokMSA_id:6821 L37786 Sutterella wadsworthensis str. WAL 9054
prokMSA_id:6822 L37785 Sutterella wadsworthensis str. WAL 7877
2.28.2.8.3 PLS.EUROPAEA_SUBGROUP 14 seqs
2.28.2.8.3.1069 OTU 1 seq
prokMSA_id:6838 X86588 Alcaligenes sp. str. 15-58
2.28.2.8.3.1067 OTU 1 seq
prokMSA_id:6833 X86580 Alcaligenes sp. str. 05-36
2.28.2.8.3.1092 OTU 1 seq
prokMSA_id:6840 AF190911 Pelistega europaea LMG 15725
2.28.2.8.3.27602 OTU 3 seqs
prokMSA_id:6824 AF067729 Taylorella asinigenitalis UCD 1
prokMSA_id:30921 AF297174 Taylorella asinigenitalis strain UK-1 
prokMSA_id:48585 AF297175 Taylorella asinigenitalis strain UK-2 
2.28.2.8.3.27600 OTU 6 seqs
prokMSA_id:6823 X68645 Taylorella equigenitalis NCTC 11184
prokMSA_id:18745 AF297172 Taylorella equigenitalis strain 10783 
prokMSA_id:27919 AB066372 Taylorella equigenitalis 
prokMSA_id:29584 AF297173 Taylorella equigenitalis strain 96-178 
prokMSA_id:33535 AB069660 Taylorella equigenitalis 
prokMSA_id:47850 AF408197 Taylorella equigenitalis strain NCTC11184 complete 
2.28.2.8.3.31353 OTU 2 seqs
prokMSA_id:18037 AF133538 Oligella urethralis 
prokMSA_id:70363 AJ251911 Oligella urethralis strain LMG 1015
2.28.2.8.4 BRD.BRONCHISEPTICA_SUBGROUP 115 seqs
2.28.2.8.4.10253 OTU 1 seq
prokMSA_id:73994 AY081994 clone KRA30-58 
2.28.2.8.4.10564 OTU 1 seq
prokMSA_id:81802 AY218672 clone KD9-65 
2.28.2.8.4.1123 OTU 1 seq
prokMSA_id:6859 AJ133493 Alcaligenes sp. isolate CCUG 36768
2.28.2.8.4.1122 OTU 1 seq
prokMSA_id:6858 Y07585 clone DA014
2.28.2.8.4.1131 OTU 1 seq
prokMSA_id:6860 L29265 endosymbiont of Blastocrithidia culicis
2.28.2.8.4.1150 OTU 1 seq
prokMSA_id:6870 AJ002808 Alcaligenes sp. str. R5
2.28.2.8.4.11957 OTU 1 seq
prokMSA_id:38105 AF371864 clone p-861-a5 
2.28.2.8.4.1205 OTU 1 seq
prokMSA_id:6892 AJ004688 Alcaligenes D2 str. D2
2.28.2.8.4.13336 OTU 1 seq
prokMSA_id:46142 AB076883 Achromobacter sp. clone:TSL-17
2.28.2.8.4.14816 OTU 1 seq
prokMSA_id:68622 AY081979 clone KRA30+11 
2.28.2.8.4.14794 OTU 1 seq
prokMSA_id:68617 AY081983 clone KRA30+16 
2.28.2.8.4.14789 OTU 1 seq
prokMSA_id:68615 AY081985 clone KRA30+18 
2.28.2.8.4.14827 OTU 1 seq
prokMSA_id:68627 AY081973 clone KRA30+01 
2.28.2.8.4.14975 OTU 1 seq
prokMSA_id:37958 AB039335 Bordetella sp. M1-6 
2.28.2.8.4.15423 OTU 1 seq
prokMSA_id:22985 AJ277742 Brackiella oedipodis strain LMG 19451 R8846
2.28.2.8.4.166 OTU 1 seq
prokMSA_id:55861 AJ412686 Alcaligenes sp. I 
2.28.2.8.4.18160 OTU 1 seq
prokMSA_id:62502 AF513937 Alcaligenaceae clone LA1-B29N 
2.28.2.8.4.20411 OTU 1 seq
prokMSA_id:49039 AF293006 Green Bay ferromanganous micronodule MND1 
2.28.2.8.4.21764 OTU 1 seq
prokMSA_id:40719 AF143843 clone AF2.3 
2.28.2.8.4.2370 OTU 1 seq
prokMSA_id:49531 AF227829 Bordetella sp. 61717 
2.28.2.8.4.28206 OTU 2 seqs
prokMSA_id:6876 L29303 symbiont of Crithidia sp
prokMSA_id:71865 L29303 Kinetoplastibacterium crithidii complete 
2.28.2.8.4.29485 OTU 2 seqs
prokMSA_id:35834 AJ251912 Oligella ureolytica strain LMG 6519
prokMSA_id:45567 AF227164 Oligella ureolytica 
2.28.2.8.4.33933 OTU 3 seqs
prokMSA_id:24220 AF282916 Pigmentiphaga kullae strain K24 
prokMSA_id:62876 AB088856 Pigmentiphaga sp. NDS-1 
prokMSA_id:72020 AF394170 Blackwater bioreactor BW5 
2.28.2.8.4.34434 OTU 14 seqs
prokMSA_id:6843 U04949 Bordetella parapertussis ATCC 15311
prokMSA_id:6872 U04820 Bordetella holmesii CDC F5101
prokMSA_id:6875 U04950 Bordetella pertussis ATCC 9797
prokMSA_id:6877 X57026 Bordetella bronchiseptica str. S-1
prokMSA_id:6889 AF142326 Bordetella pertussis str. Tohama CIP 81.32
prokMSA_id:6890 AF142327 Bordetella pertussis CIP 105.894
prokMSA_id:18270 AJ278452 Bordetella bronchiseptica strain DSM 10303
prokMSA_id:18382 AF469002 Bordetella holmesii 
prokMSA_id:25458 E06073 Bordetella bronchiseptica 
prokMSA_id:31379 E03742 of Bordetella bronchiseptica 
prokMSA_id:39920 AF366579 Bordetella holmesii strain B436 
prokMSA_id:43620 AJ278450 Bordetella parapertussis strain DSM 4922
prokMSA_id:49946 AF366577 Bordetella parapertussis strain B24 
prokMSA_id:53451 AF366578 Bordetella parapertussis strain B1232 
2.28.2.8.4.3654 OTU 1 seq
prokMSA_id:65391 AF511516 Achromobacter xylosoxidans 
2.28.2.8.4.41429 OTU 13 seqs
prokMSA_id:6863 AJ002815 Alcaligenes sp. str. R4
prokMSA_id:6864 AF155147 Alcaligenes faecalis subsp. dimethylsulfidosus str. M3A
prokMSA_id:6867 D88008 Alcaligenes faecalis IAM 12369
prokMSA_id:18554 AF407382 clone RB7C3 
prokMSA_id:19516 AF423224 soil clone 1392-1 
prokMSA_id:25009 AJ277669 Alcaligenes faecalis 
prokMSA_id:28612 AF407379 clone RA7C9 
prokMSA_id:29960 AF407389 clone Ra9C2 
prokMSA_id:31266 AF407380 clone RA7C16 
prokMSA_id:51247 AF407414 clone RB13C11 
prokMSA_id:59709 AB091759 Alcaligenes faecalis complete 
prokMSA_id:74694 G AJ242986 Alcaligenes faecalis subsp. parafaecalis strain 
prokMSA_id:82241 AY214198 clone ZZ14AC10 
2.28.2.8.4.41568 OTU 35 seqs
prokMSA_id:6869 AJ002802 Alcaligenes sp. str. 151
prokMSA_id:6878 AJ002804 Alcaligenes sp. str. 159
prokMSA_id:6879 AJ002809 Alcaligenes sp. str. R6
prokMSA_id:6883 X86590 Alcaligenes sp. str. 30-68
prokMSA_id:6893 AB015607 Bordetella sp. str. KP22
prokMSA_id:18218 AF177667 Bordetella hinzii complete 
prokMSA_id:20845 AF225979 Achromobacter xylosoxidans subsp. xylosoxidans 
prokMSA_id:21204 AF439314 Achromobacter xylosoxidans subsp. xylosoxidans strain A19 
prokMSA_id:21781 AJ249861 Bordetella petrii strain DSM 12804
prokMSA_id:26037 AF177666 Bordetella avium complete 
prokMSA_id:26123 AY027506 Arsenite-oxidizing 'Alcaligenes fecalis HLE' 
prokMSA_id:28519 AF411021 Achromobacter xylosoxidans subsp. xylosoxidans 
prokMSA_id:28965 AF232712 Achromobacter xylosoxidans subsp. denitrificans 
prokMSA_id:30978 AY027500 Arsenite-oxidizing NT-10 
prokMSA_id:32178 AY027504 Arsenite-oxidizing BEN-4 
prokMSA_id:32410 AB046605 Alcaligenes sp. STC1 
prokMSA_id:35264 AF411019 Achromobacter xylosoxidans strain AU0665 
prokMSA_id:38214 AJ277798 Bordetella trematum strain DSM 11334 
prokMSA_id:40974 AF394171 Blackwater bioreactor BW6 
prokMSA_id:42554 AF411020 Achromobacter xylosoxidans strain AU1011 
prokMSA_id:43556 AB076884 Achromobacter sp. clone:TSL-20
prokMSA_id:55338 AF531768 Achromobacter xylosoxidans 
prokMSA_id:64740 AJ278451 Achromobacter xylosoxidans subsp. denitrificans strain DSM 3
prokMSA_id:68624 AY081977 clone KRA30+06A 
prokMSA_id:73213 AF511432 Alcaligenes sp. CCCO7 
prokMSA_id:73293 AJ306836 Alcaligenes sp. isolate ON5
prokMSA_id:77823 AJ491839 Alcaligenes xylosoxidans strain A1
prokMSA_id:77844 E AJ491844 Alcaligenes xylosoxidans strain
prokMSA_id:77845 F AJ491845 Alcaligenes xylosoxidans strain
prokMSA_id:78111 H AJ491846 Alcaligenes xylosoxidans strain
prokMSA_id:78128 AJ491840 Alcaligenes xylosoxidans strain A2
prokMSA_id:78208 AY170848 Achromobacter sp. LMG 5911 
prokMSA_id:78362 AY170847 Achromobacter sp. LMG 6003 
prokMSA_id:78940 AJ534850 Alcaligenes sp. DW104 isolate DW104
prokMSA_id:80939 AY189752 Achromobacter xylosoxidans 
2.28.2.8.4.41553 OTU 3 seqs
prokMSA_id:6891 D88005 Achromobacter xylosoxidans subsp. xylosoxidans IAM 12684
prokMSA_id:33221 AY038619 clone GL182.6 
prokMSA_id:67343 AF494543 Benzoapyrene-degrading BPC7 
2.28.2.8.4.41809 OTU 11 seqs
prokMSA_id:6845 AJ005447 Alcaligenes defragrans str. 54Pin DSM 12141
prokMSA_id:6846 U82826 Alcaligenes NKNTAU str. NKNTAU
prokMSA_id:6847 AB021336 str. rM1
prokMSA_id:6848 AB021351 str. rM16
prokMSA_id:6849 AB021352 str. rM17
prokMSA_id:6850 AB021360 str. rA9
prokMSA_id:6851 AJ005448 Alcaligenes defragrans str. 51Men
prokMSA_id:6852 AJ005449 Alcaligenes defragrans str. 62Car
prokMSA_id:6853 AJ005450 Alcaligenes defragrans str. 65Phen
prokMSA_id:6887 AJ224990 str. from Lake Gossenkoellesee
prokMSA_id:19435 AJ290001 FukuN65 
2.28.2.8.4.42091 OTU 2 seqs
prokMSA_id:6881 X86584 Alcaligenes sp. str. 05-51
prokMSA_id:6882 X86589 Alcaligenes sp. str. 15-62
2.28.2.8.4.42633 OTU 3 seqs
prokMSA_id:66241 AF508102 Alcaligenes defragrans isolate TJ4 
prokMSA_id:66242 AF508100 Alcaligenes defragrans isolate N1 
prokMSA_id:66243 AF508101 Alcaligenes defragrans isolate TG26 
2.28.2.8.4.4656 OTU 1 seq
prokMSA_id:64879 AJ412685 Alcaligenes sp. H 
2.28.2.8.4.5761 OTU 1 seq
prokMSA_id:81261 AY214174 clone ZZ9C4 
2.28.2.8.4.6197 OTU 1 seq
prokMSA_id:72856 AF150694 Elbe River snow isolate Iso14 
2.28.2.8.4.6864 OTU 1 seq
prokMSA_id:50693 AF418952 clone HTCC2 
2.28.2.8.4.7189 OTU 1 seq
prokMSA_id:82057 AY214192 clone ZZ14C6 
2.28.2.8.4.8096 OTU 1 seq
prokMSA_id:81518 AY214197 clone ZZ14AC6 
2.28.2.9 ACIDOVORAX_GROUP 428 seqs
2.28.2.9.2 TMN.THERMOSULFATUS_SUBGROUP 4 seqs
2.28.2.9.2.34378 OTU 3 seqs
prokMSA_id:20114 AF387302 Thiomonas sp. Ynys1 
prokMSA_id:81582 AJ549218 Thiomonas sp. B1 isolate B1
prokMSA_id:82391 AJ549220 Thiomonas sp. B3 isolate B3
2.28.2.9.2.3760 OTU 1 seq
prokMSA_id:34681 AF387303 Thiomonas sp. Ynys3 
2.28.2.9.4 ACIDOVORAX_SUBGROUP 318 seqs
2.28.2.9.4.1 COM.TERRIGENA_SUBGROUP 81 seqs
2.28.2.9.4.1.10288 OTU 1 seq
prokMSA_id:59570 AY134895 TM7 phylum sp. oral clone EW086 
2.28.2.9.4.1.12242 OTU 1 seq
prokMSA_id:67639 AF275377 Comamonas sp. KCTC 12005 
2.28.2.9.4.1.14800 OTU 1 seq
prokMSA_id:68619 AY081982 clone KRA30+15 
2.28.2.9.4.1.15030 OTU 1 seq
prokMSA_id:30714 AB066237 Comamonas sp. PJ712 
2.28.2.9.4.1.1771 OTU 1 seq
prokMSA_id:6916 AB021341 str. rM6
2.28.2.9.4.1.1796 OTU 1 seq
prokMSA_id:6924 AF188304 Comamonas D22 str. D22
2.28.2.9.4.1.1798 OTU 1 seq
prokMSA_id:6925 AF078773 Comamonas 12022 str. 12022
2.28.2.9.4.1.1805 OTU 1 seq
prokMSA_id:6929 AF125205 clone F061
2.28.2.9.4.1.1840 OTU 1 seq
prokMSA_id:6938 D14320 Brachymonas denitrificans str. AS-P1 JCM 9216
2.28.2.9.4.1.19230 OTU 1 seq
prokMSA_id:39805 AF385500 TM7 phylum sp. oral clone EW055 
2.28.2.9.4.1.1957 OTU 1 seq
prokMSA_id:72347 AY005446 sp. oral clone BE109 
2.28.2.9.4.1.30266 OTU 7 seqs
prokMSA_id:6914 AB021337 str. rM2
prokMSA_id:6915 AB021338 str. rM3
prokMSA_id:6917 AB021342 str. rM7
prokMSA_id:6918 AB021346 str. rM11
prokMSA_id:6919 AB021348 str. rM13
prokMSA_id:6920 AB021353 str. rA1
prokMSA_id:6921 AB021355 str. rA3
2.28.2.9.4.1.30412 OTU 6 seqs
prokMSA_id:6930 AB021345 str. rM10
prokMSA_id:6931 AB021347 str. rM12
prokMSA_id:6932 AB021357 str. rA6
prokMSA_id:6933 AB021358 str. rA7
prokMSA_id:6934 AB021359 str. rA8
prokMSA_id:6935 AB021362 str. rA11
2.28.2.9.4.1.30415 OTU 2 seqs
prokMSA_id:6939 X95839 str. T60
prokMSA_id:6940 Z93993 clone T60
2.28.2.9.4.1.32006 OTU 9 seqs
prokMSA_id:18248 AF233876 Comamonas denitrificans strain 110 
prokMSA_id:20196 AB076868 beta clone:OS1L-11
prokMSA_id:22960 AB076867 beta clone:OS1L-10
prokMSA_id:23191 AF233877 Comamonas denitrificans strain 123 
prokMSA_id:35749 AB076869 beta clone:OS1L-16
prokMSA_id:40166 AF233878 Comamonas denitrificans strain 2.99g 
prokMSA_id:42211 AB076865 beta clone:OS1L-7
prokMSA_id:73055 AF233880 Comamonas denitrificans strain P17 
prokMSA_id:74723 AF233879 Comamonas denitrificans strain 5.38g 
2.28.2.9.4.1.32245 OTU 5 seqs
prokMSA_id:6928 AF078772 Comamonas terrigena str. IMI 359870
prokMSA_id:6936 AB021418 Comamonas terrigena IAM 12052
prokMSA_id:17652 AJ420326 Comamonas terrigena strain DSM 7099
prokMSA_id:66690 AJ430343 Comamonas terrigena strain LMG 1249
prokMSA_id:66691 AJ430342 Comamonas terrigena strain LMG 1253T
2.28.2.9.4.1.35169 OTU 12 seqs
prokMSA_id:6912 M11224 Comamonas testosteroni str. RH 1104 ATCC 11996
prokMSA_id:6926 AB007996 Comamonas testosteroni str. MBIC3840
prokMSA_id:6927 AB007997 Comamonas testosteroni str. MBIC3841
prokMSA_id:17736 AB066235 Comamonas sp. PJ111 
prokMSA_id:22861 AF172067 Comamonas testosteroni 
prokMSA_id:23431 AB064318 Comamonas testosteroni 
prokMSA_id:29690 AF408328 Comamonas sp. clone KL-27-1-15 
prokMSA_id:36587 E34470 and method detecting Ps. Alcaligenes KB2 strain by using in 
prokMSA_id:62423 AF529091 beta clone FTL2 
prokMSA_id:64241 AF519533 Comamonas testosteroni isolate Q10 
prokMSA_id:69635 AF434169 Comamonas sp. AV1A 
prokMSA_id:71738 AF538933 Comamonas testosteroni WDL7 
2.28.2.9.4.1.40695 OTU 3 seqs
prokMSA_id:32915 AF336312 Comamonas testosteroni strain SMCC B329 
prokMSA_id:66754 AF501881 Comamonas sp. SMCC B0630 
prokMSA_id:71872 AF501880 Comamonas testosteroni strain SMCC B0589 
2.28.2.9.4.1.40793 OTU 21 seqs
prokMSA_id:6901 AF078774 Delftia acidovorans str. Stanier 14 ACM 489
prokMSA_id:6902 AJ002803 Comamonas sp. str. 158
prokMSA_id:6904 AB021417 Comamonas acidovorans IAM 12409
prokMSA_id:6905 AF149849 Comamonas MC1 str. MC1
prokMSA_id:6908 AB020186 Delftia acidovorans str. MBIC1305 IFO 13582
prokMSA_id:6909 AB015567 str. BD5-11
prokMSA_id:22083 AJ295454 Rape rhizosphere tsb077 
prokMSA_id:23283 AF210313 Aniline-degrading HY99 complete 
prokMSA_id:26640 AB075017 Delftia sp. T7 
prokMSA_id:36246 AF410435 Delftia acidovorans 
prokMSA_id:37071 AY052781 Delftia sp. AN3 
prokMSA_id:38068 AB074256 Delftia acidovorans 
prokMSA_id:43605 AJ237966 Delftia sp. EK3 isolate EK3
prokMSA_id:48031 AJ295450 Rape rhizosphere tsb068 
prokMSA_id:56616 AF529108 beta clone FTL247 
prokMSA_id:59908 AY133088 beta clone ccslm224 
prokMSA_id:61813 AF529351 beta clone CLs74 
prokMSA_id:61830 AF529333 beta clone CLi36 
prokMSA_id:72520 AF181575 Comamonas cf. acidovorans 
prokMSA_id:76524 AJ534658 beta clone S15A-MN36
prokMSA_id:78243 AB074610 beta clone:APe4_31
2.28.2.9.4.1.439 OTU 1 seq
prokMSA_id:64300 AB086632 Lampropedia hyalina 
2.28.2.9.4.1.5578 OTU 1 seq
prokMSA_id:21007 AJ318129 beta clone BIfdi44
2.28.2.9.4.1.562 OTU 1 seq
prokMSA_id:34261 AJ318200 clone BIxi1
2.28.2.9.4.1.563 OTU 1 seq
prokMSA_id:33606 AF419661 a2b013 
2.28.2.9.4.1.8633 OTU 1 seq
prokMSA_id:59346 AF502222 clone HP1B33 
2.28.2.9.4.2 HGP.FLAVA_SUBGROUP 8 seqs
2.28.2.9.4.2.14487 OTU 1 seq
prokMSA_id:30654 AJ420328 Hydrogenophaga flava strain DSM 619
2.28.2.9.4.2.18347 OTU 1 seq
prokMSA_id:47512 AJ420327 Hydrogenophaga pseudoflava strain DSM 1034
2.28.2.9.4.2.2727 OTU 1 seq
prokMSA_id:73090 AF234720 sludge A6b 
2.28.2.9.4.2.37347 OTU 5 seqs
prokMSA_id:6941 AF078771 Hydrogenophaga flava CCUG 1658
prokMSA_id:6942 AB021420 Hydrogenophaga flava DSM 619
prokMSA_id:6943 AF078770 Hydrogenophaga pseudoflava str. GA3 ATCC 33668
prokMSA_id:6945 AJ009497 clone SJA-155
prokMSA_id:76529 AY168753 Hydrogenophaga sp. ATCC BAA-306 
2.28.2.9.4.3 HGP.PALLERONII_SUBGROUP 14 seqs
2.28.2.9.4.3.1901 OTU 1 seq
prokMSA_id:6953 AF019037 Hydrogenophaga DSM 5680 str. S1
2.28.2.9.4.3.2143 OTU 1 seq
prokMSA_id:41692 AF445679 beta clone SM1E01 
2.28.2.9.4.3.31642 OTU 2 seqs
prokMSA_id:6952 AB021387 Pseudomonas spinosa ATCC 14606
prokMSA_id:77847 AB077038 Pseudomonas spinosa 
2.28.2.9.4.3.33178 OTU 2 seqs
prokMSA_id:21895 AY027497 Arsenite-oxidizing NT-14 
prokMSA_id:40028 AY027499 Arsenite-oxidizing NT-6 
2.28.2.9.4.3.42230 OTU 2 seqs
prokMSA_id:59911 AY133083 beta clone ccslm2112 
prokMSA_id:61826 AF529338 beta clone CLi60 
2.28.2.9.4.3.42671 OTU 6 seqs
prokMSA_id:6946 AF078768 Hydrogenophaga taeniospiralis ATCC 49743
prokMSA_id:18413 AF445688 beta clone SM1E11 
prokMSA_id:36603 AJ422157 beta clone Spb54
prokMSA_id:45634 AJ422171 beta clone Spb266
prokMSA_id:51945 AJ422167 beta clone Spb223
prokMSA_id:81562 AY218562 clone KD1-44 
2.28.2.9.4.4 STR.T41_SUBGROUP 13 seqs
2.28.2.9.4.4.1925 OTU 1 seq
prokMSA_id:6961 AF097794 clone 1952
2.28.2.9.4.4.42912 OTU 2 seqs
prokMSA_id:6955 AF110006 str. mz1L
prokMSA_id:6962 AF097797 clone 19523
2.28.2.9.4.4.42913 OTU 10 seqs
prokMSA_id:6954 X95836 str. T25
prokMSA_id:6956 AJ001325 unnamed organism
prokMSA_id:6957 Z93971 clone T25
prokMSA_id:6958 Z93972 clone T19
prokMSA_id:6965 X95838 str. T41
prokMSA_id:6967 Z93968 clone T71
prokMSA_id:6968 Z93969 clone T83
prokMSA_id:6970 Z93973 clone T41
prokMSA_id:6971 Z93974 clone T70
prokMSA_id:6972 Z93977 clone T47
2.28.2.9.4.5 AQSP.GRACILE 1 seq
2.28.2.9.4.5.1948 OTU 1 seq
prokMSA_id:6974 AF078753 Aquaspirillum gracile str. D4 ATCC 19624
2.28.2.9.4.6 STR.BERLIN7_SUBGROUP 1 seq
2.28.2.9.4.6.1949 OTU 1 seq
prokMSA_id:6975 AF035053 unnamed organism
2.28.2.9.4.8 RHF.FERMENTANS_SUBGROUP 71 seqs
2.28.2.9.4.8.10443 OTU 1 seq
prokMSA_id:82413 AY214181 clone ZZ12C5 
2.28.2.9.4.8.11327 OTU 1 seq
prokMSA_id:81902 AY218644 clone KD4-7 
2.28.2.9.4.8.13003 OTU 1 seq
prokMSA_id:59902 AY133093 beta clone ccslm256 
2.28.2.9.4.8.15011 OTU 1 seq
prokMSA_id:24121 AJ422160 beta clone Spb98
2.28.2.9.4.8.17050 OTU 1 seq
prokMSA_id:23857 AY013643 Banisveld landfill BVB72 
2.28.2.9.4.8.17263 OTU 1 seq
prokMSA_id:76891 AY166684 Coccomonas naphthalovorans 
2.28.2.9.4.8.17365 OTU 1 seq
prokMSA_id:62408 AF529106 beta clone FTL236 
2.28.2.9.4.8.17440 OTU 1 seq
prokMSA_id:61807 AF529357 beta clone CLs95 
2.28.2.9.4.8.18739 OTU 1 seq
prokMSA_id:71078 bp Y12375 1484
2.28.2.9.4.8.18848 OTU 1 seq
prokMSA_id:56031 AY145615 beta clone DC11-51-0 
2.28.2.9.4.8.19413 OTU 1 seq
prokMSA_id:70503 AJ289999 FukuN55 
2.28.2.9.4.8.19642 OTU 1 seq
prokMSA_id:7005 U14585 Polaromonas vacuolata str. 34-P
2.28.2.9.4.8.19644 OTU 1 seq
prokMSA_id:7006 AJ224987 str. from Lake Gossenkoellesee
2.28.2.9.4.8.1992 OTU 1 seq
prokMSA_id:6994 AF173821 clone LB3-27
2.28.2.9.4.8.1997 OTU 1 seq
prokMSA_id:6999 Y11465 str. D8
2.28.2.9.4.8.21452 OTU 1 seq
prokMSA_id:62986 AF526921 Aquaspirillum sp. clone T8-4 rrn 
2.28.2.9.4.8.21480 OTU 1 seq
prokMSA_id:62991 AF526920 Aquaspirillum sp. clone T8-7 rrn 
2.28.2.9.4.8.2834 OTU 1 seq
prokMSA_id:35165 AJ290026 GKS2-122 
2.28.2.9.4.8.2996 OTU 1 seq
prokMSA_id:33948 AF236005 Beta F1021 
2.28.2.9.4.8.3075 OTU 1 seq
prokMSA_id:18901 AF407416 clone RB13C13 
2.28.2.9.4.8.3162 OTU 1 seq
prokMSA_id:20142 AJ421940 beta clone Elb270
2.28.2.9.4.8.3350 OTU 1 seq
prokMSA_id:43083 AF418942 clone HTA10 
2.28.2.9.4.8.40548 OTU 2 seqs
prokMSA_id:6995 AF078756 Aquaspirillum delicatum str. 146 LMG 4328
prokMSA_id:51397 AF236004 Beta A0637 
2.28.2.9.4.8.40871 OTU 5 seqs
prokMSA_id:81368 AY214173 clone ZZ9C2 
prokMSA_id:81427 AY214175 clone ZZ9C5 
prokMSA_id:81879 AY214177 clone ZZ9C12 
prokMSA_id:81934 AY214176 clone ZZ9C11 
prokMSA_id:82365 AY214178 clone ZZ9C20 
2.28.2.9.4.8.41154 OTU 5 seqs
prokMSA_id:39868 AF407381 clone RB7C2 
prokMSA_id:44459 AF407412 clone RB13C6 
prokMSA_id:45498 AF407413 clone RB13C10 
prokMSA_id:46854 AF407397 clone RB9C10 
prokMSA_id:50642 AF407396 clone RB9C6 
2.28.2.9.4.8.42366 OTU 2 seqs
prokMSA_id:29558 AJ295499 rape rhizosphere wr0041 
prokMSA_id:53922 AF361203 beta clone 16 
2.28.2.9.4.8.42790 OTU 6 seqs
prokMSA_id:6979 D16212 Rhodoferax fermentans str. FR3
prokMSA_id:6980 D16211 Rhodoferax fermentans str. FR2
prokMSA_id:6988 Z93955 clone T67
prokMSA_id:34909 AJ422168 beta clone Spb249
prokMSA_id:50786 AB030614 epsilon 1016 
prokMSA_id:73303 AY050594 clone GOUTB7 
2.28.2.9.4.8.42755 OTU 13 seqs
prokMSA_id:18730 AJ421938 beta clone Elb263
prokMSA_id:69400 AY145570 Comamonadaceae BP-1b 
prokMSA_id:72267 AF289168 beta clone PRD01b008B 
prokMSA_id:73849 AY145569 Comamonadaceae BP-1 
prokMSA_id:80799 AF468446 Arctic sea ice ARK10281 
prokMSA_id:81090 AY218726 clone KD5-110 
prokMSA_id:81503 AY218648 clone KD4-83 
prokMSA_id:81515 AY218635 clone KD4-45 
prokMSA_id:81758 AY218587 clone KD2-60 
prokMSA_id:81834 AY218553 clone KD1-133 
prokMSA_id:82256 AY218642 clone KD4-65 
prokMSA_id:82291 AY218607 clone KD3-141 
prokMSA_id:82377 AY218550 clone KD1-118 
2.28.2.9.4.8.42827 OTU 3 seqs
prokMSA_id:6997 AB021390 Pseudomonas lanceolata ATCC 14669
prokMSA_id:25979 AY050604 clone GOUTB19 
prokMSA_id:56377 AY133071 beta clone ccs221 
2.28.2.9.4.8.42853 OTU 2 seqs
prokMSA_id:62979 AF526930 Aquaspirillum sp. clone T5-1 rrn 
prokMSA_id:62982 AF526926 Aquaspirillum sp. clone T5-4 rrn 
2.28.2.9.4.8.42915 OTU 2 seqs
prokMSA_id:6986 X95837 str. T3
prokMSA_id:6990 Z93957 clone T3
2.28.2.9.4.8.4329 OTU 1 seq
prokMSA_id:72635 AF289169 beta clone PRD01b009B 
2.28.2.9.4.8.4781 OTU 1 seq
prokMSA_id:20305 AJ421927 beta clone Elb154
2.28.2.9.4.8.4778 OTU 1 seq
prokMSA_id:81130 AY218568 clone KD2-104 
2.28.2.9.4.8.5182 OTU 1 seq
prokMSA_id:36075 AF361193 beta clone 08 
2.28.2.9.4.8.6514 OTU 1 seq
prokMSA_id:51248 AF407400 clone RA13C10 
2.28.2.9.4.8.6588 OTU 1 seq
prokMSA_id:80703 AF468328 clone ARKMP-77 
2.28.2.9.4.8.6915 OTU 1 seq
prokMSA_id:73570 AF289170 beta clone PRD01b010B 
2.28.2.9.4.8.8166 OTU 1 seq
prokMSA_id:82193 AY218738 clone KD5-43 
2.28.2.9.4.8.9866 OTU 1 seq
prokMSA_id:81748 AY218637 clone KD4-57 
2.28.2.9.4.10 VRV.PARADOXUS_SUBGROUP 22 seqs
2.28.2.9.4.10.10490 OTU 1 seq
prokMSA_id:82437 AY169431 Variovorax paradoxus clone 1-94 
2.28.2.9.4.10.11748 OTU 1 seq
prokMSA_id:59726 AF538929 Variovorax sp. WDL1 
2.28.2.9.4.10.14215 OTU 1 seq
prokMSA_id:22797 AF408329 Variovorax sp. clone KL-93-1-6 
2.28.2.9.4.10.18465 OTU 1 seq
prokMSA_id:47559 AB051690 Variovorax sp. HAB-29 
2.28.2.9.4.10.20883 OTU 1 seq
prokMSA_id:41200 AF236012 Beta A0837 
2.28.2.9.4.10.21449 OTU 1 seq
prokMSA_id:62983 AF526925 Variovorax sp. clone T6-5 rrn 
2.28.2.9.4.10.21423 OTU 1 seq
prokMSA_id:62976 AF526934 Variovorax sp. clone 84-3 rrn 
2.28.2.9.4.10.42199 OTU 13 seqs
prokMSA_id:7022 D30793 Variovorax paradoxus IAM 12373
prokMSA_id:7028 D88006 Variovorax paradoxus IAM 12373
prokMSA_id:7029 AB003627 Variovorax WFF52 str. WFF52
prokMSA_id:35360 AJ420329 Variovorax paradoxus strain DSM 66
prokMSA_id:43527 AB051691 Variovorax sp. HAB-30 
prokMSA_id:50112 AF388028 Variovorax sp. 34 
prokMSA_id:58864 AF426000 UNSW5 
prokMSA_id:58871 AF423075 Beta '#33 spreading' 
prokMSA_id:60338 AF534203 clone Nap240 
prokMSA_id:71064 AF423073 Beta '#33 clear' 
prokMSA_id:74636 AJ292627 WD2115 clone WD2115
prokMSA_id:78024 AB098595 Variovorax sp. TUT1027 
prokMSA_id:78833 AY177770 Variovorax sp. isolate 4f48 
2.28.2.9.4.10.42847 OTU 2 seqs
prokMSA_id:62971 AF526938 Variovorax sp. clone 81-4 rrn 
prokMSA_id:62974 AF526935 Variovorax sp. clone 84-23 rrn 
2.28.2.9.4.12 XP.AMPELINUS_SUBGROUP 4 seqs
2.28.2.9.4.12.12775 OTU 1 seq
prokMSA_id:38267 AJ292624 WD291 clone WD291
2.28.2.9.4.12.14028 OTU 1 seq
prokMSA_id:45606 AF364862 BA128 
2.28.2.9.4.12.19724 OTU 1 seq
prokMSA_id:7036 Z93961 clone T59
2.28.2.9.4.12.8977 OTU 1 seq
prokMSA_id:81611 AY218585 clone KD2-46 
2.28.2.9.4.13 AV.AVENAE_SUBGROUP 57 seqs
2.28.2.9.4.13.10422 OTU 1 seq
prokMSA_id:82409 AY214203 clone ZZ15C2 
2.28.2.9.4.13.1058 OTU 1 seq
prokMSA_id:80070 AY188297 clone KD1-99 
2.28.2.9.4.13.10872 OTU 1 seq
prokMSA_id:74685 AJ400840 Acidovorax wohlfahrtii strain B2/74
2.28.2.9.4.13.11135 OTU 1 seq
prokMSA_id:28959 AB076844 Acidovorax sp. OS-6 
2.28.2.9.4.13.15351 OTU 1 seq
prokMSA_id:22962 AJ318167 clone BIrii27
2.28.2.9.4.13.15769 OTU 1 seq
prokMSA_id:76621 AJ532684 beta clone Gitt-KF-21
2.28.2.9.4.13.1671 OTU 1 seq
prokMSA_id:78916 AJ537466 Ottowia thiooxidans strain K11T
2.28.2.9.4.13.187 OTU 1 seq
prokMSA_id:78738 AY177768 Acidovorax sp
2.28.2.9.4.13.19746 OTU 1 seq
prokMSA_id:7040 Z93965 clone T22
2.28.2.9.4.13.19830 OTU 1 seq
prokMSA_id:7068 AB021328 str. rJ10
2.28.2.9.4.13.19818 OTU 1 seq
prokMSA_id:7061 AB021339 str. rM4
2.28.2.9.4.13.19817 OTU 1 seq
prokMSA_id:7060 AB021330 str. rJ12
2.28.2.9.4.13.19853 OTU 1 seq
prokMSA_id:7074 AF078764 Acidovorax delafieldii ATCC 17505
2.28.2.9.4.13.20507 OTU 1 seq
prokMSA_id:55628 AB087519 clone:R6-01
2.28.2.9.4.13.41954 OTU 7 seqs
prokMSA_id:7038 AF078765 Acidovorax facilis CCUG 2113
prokMSA_id:19277 AF235013 Acidovorax sp. UFZ-B530 
prokMSA_id:19406 AJ295481 rape rhizosphere wr0020 
prokMSA_id:24374 AJ420324 Acidovorax facilis strain DSM 649
prokMSA_id:25119 AF235010 Acidovorax sp. UFZ-B517 
prokMSA_id:49770 AY050599 clone GOUTB16 
prokMSA_id:64550 AJ431731 Acidovorax valerianelle strain CFBP 4730
2.28.2.9.4.13.42086 OTU 2 seqs
prokMSA_id:65461 AY102324 clone a13125 
prokMSA_id:65472 AY102310 clone a13103 
2.28.2.9.4.13.42397 OTU 6 seqs
prokMSA_id:7047 AF078762 Acidovorax avenae subsp. cattleyae NCPPB 961
prokMSA_id:7054 AF078761 Acidovorax avenae subsp. citrulli ATCC 29625
prokMSA_id:7067 AF078759 Acidovorax avenae subsp. avenae ATCC 19860
prokMSA_id:7070 AF137504 Acidovorax avenae subsp. cattleyae ICMP 2826
prokMSA_id:7071 AF137505 Acidovorax avenae subsp. avenae ICMP 3183
prokMSA_id:7072 AF137506 Acidovorax avenae subsp. citrulli ICMP 7500
2.28.2.9.4.13.42420 OTU 3 seqs
prokMSA_id:7052 AF078760 Acidovorax konjaci str. K2 ATCC 33996
prokMSA_id:7053 AF137507 Acidovorax konjaci str. K2 ICMP 7733
prokMSA_id:52263 AJ420325 Acidovorax konjaci strain DSM 7481
2.28.2.9.4.13.42447 OTU 10 seqs
prokMSA_id:7043 Y18616 Acidovorax defluvii str. BSB411
prokMSA_id:7044 AJ012070 Acidovorax G7A1 str. G7A1
prokMSA_id:7045 AJ012071 Acidovorax G8B1 str. G8B1
prokMSA_id:7057 U51101 str. BrG1
prokMSA_id:7058 U51104 str. BrG4
prokMSA_id:7077 AF015487 str. P51
prokMSA_id:62392 AF529122 beta clone FTLM27 
prokMSA_id:76895 AJ534662 beta clone S15A-MN11
prokMSA_id:81589 AY214196 clone ZZ14C11 
prokMSA_id:81755 AY214202 clone ZZ15C1 
2.28.2.9.4.13.42553 OTU 9 seqs
prokMSA_id:7062 AB021344 str. rM9
prokMSA_id:7063 AB008429 Comamonas sp. str. MBIC3885
prokMSA_id:17198 AF143840 clone AF1-8 
prokMSA_id:31108 AF234687 sludge H21 
prokMSA_id:39244 AJ418042 Beta K601 strain K601
prokMSA_id:64871 AJ412678 clone 81
prokMSA_id:66230 AF508114 Acidovorax avenae isolate C1 
prokMSA_id:66240 AF508103 Variovorax paradoxus isolate TG27 
prokMSA_id:66952 AJ457191 Acidovorax sp. C1 strain C1
2.28.2.9.4.13.42571 OTU 6 seqs
prokMSA_id:7076 AF078767 Acidovorax 7078 str. 7078
prokMSA_id:24480 X86071 0803 filamentous strain Ben04B
prokMSA_id:24938 X86070 0803 filamentous strain Ben05B
prokMSA_id:37472 AJ420323 Acidovorax delafieldii strain DSM 50263
prokMSA_id:42288 Y18617 Acidovorax sp. BSB421 
prokMSA_id:45559 AJ009457 SJA-23 clone SJA-23
2.28.2.9.4.14 AQSP.PSYCHROPHILUM_SUBGROUP 25 seqs
2.28.2.9.4.14.11336 OTU 1 seq
prokMSA_id:81909 AY218567 clone KD1-96 
2.28.2.9.4.14.12309 OTU 1 seq
prokMSA_id:37583 AF422679 clone d156 
2.28.2.9.4.14.16610 OTU 1 seq
prokMSA_id:70139 AJ505855 Comamonadaceae PIV-3D strain PIV-3D
2.28.2.9.4.14.19884 OTU 1 seq
prokMSA_id:7089 AJ002810 Comamonas sp. str. R7
2.28.2.9.4.14.20509 OTU 1 seq
prokMSA_id:7101 AF078754 Aquaspirillum sinuosum LMG 4393
2.28.2.9.4.14.38624 OTU 2 seqs
prokMSA_id:66300 AB074527 Aquaspirillum anulus 
prokMSA_id:66303 AB074522 Aquaspirillum giesbergeri 
2.28.2.9.4.14.41160 OTU 4 seqs
prokMSA_id:7092 AB021340 str. rM5
prokMSA_id:7096 AF078757 Aquaspirillum metamorphum LMG 4339
prokMSA_id:7098 Y18618 Aquaspirillum metamorphum DSM 1837
prokMSA_id:82194 AY218554 clone KD1-134 
2.28.2.9.4.14.41211 OTU 10 seqs
prokMSA_id:7088 AF078755 Aquaspirillum psychrophilum str. CA 1 LMG 5408
prokMSA_id:7090 AB021320 str. rJ1
prokMSA_id:7091 AB021334 str. rJ16
prokMSA_id:7093 AB021361 str. rA10
prokMSA_id:16841 AF407204 clone GIF15 
prokMSA_id:34473 AF407194 clone GIF2 
prokMSA_id:45919 AF407197 clone GIF5 
prokMSA_id:47038 AY050583 clone GOUTA11 
prokMSA_id:79199 AY188326 clone KD8-10 
prokMSA_id:81545 AY218576 clone KD2-15 
2.28.2.9.4.14.42257 OTU 2 seqs
prokMSA_id:35415 AB076845 Beta NOS3 
prokMSA_id:44893 AB076846 Beta NOS8 
2.28.2.9.4.14.4304 OTU 1 seq
prokMSA_id:35320 AB076863 beta clone:OS1L-5
2.28.2.9.4.14.5146 OTU 1 seq
prokMSA_id:80589 AY188296 clone KD1-23 
2.28.2.9.4.99 VARIOUS 21 seqs
2.28.2.9.4.99.28546 OTU 3 seqs
prokMSA_id:6950 AB021327 str. rJ9
prokMSA_id:6951 AB021349 str. rM14
prokMSA_id:7024 AB021354 str. rA2
2.28.2.9.4.99.42504 OTU 9 seqs
prokMSA_id:7033 AF078758 Xylophilus ampelinus ATCC 33914
prokMSA_id:20007 AB076860 beta clone:OS1L-1
prokMSA_id:22529 AB076843 Acidovorax sp. KSP2 
prokMSA_id:22998 AJ420330 Xylophilus ampelinus strain DSM 7250
prokMSA_id:27570 AB076848 Beta OS-19 
prokMSA_id:39467 AB076847 Beta OS-9 
prokMSA_id:45318 AB076864 beta clone:OS1L-6
prokMSA_id:51135 AB076842 Acidovorax sp. KSP1 
prokMSA_id:55345 AY093698 Acidovorax sp. 'smarlab 133815' 
2.28.2.9.4.99.42558 OTU 9 seqs
prokMSA_id:7056 AF078766 Acidovorax temperans CCUG 11779
prokMSA_id:7064 AF078763 Acidovorax IMI 357678 str. IMI 357678
prokMSA_id:7097 Z93960 clone T33
prokMSA_id:35695 AF422643 clone d034 
prokMSA_id:52690 AF422662 clone d078 
prokMSA_id:58579 AJ505857 Comamonadaceae PIV-8-1 strain PIV-8-1
prokMSA_id:61833 AF529329 beta clone CLi28 
prokMSA_id:70987 AJ505858 Comamonadaceae PIV-8-2 strain PIV-8-2
prokMSA_id:73890 AF442523 Bromate-reducing B7 
2.28.2.9.5 LEPTOTHRIX_SUBGROUP 100 seqs
2.28.2.9.5.1 RUB.GELATINOSUS_SUBGROUP 31 seqs
2.28.2.9.5.1.10552 OTU 1 seq
prokMSA_id:51718 AJ421931 beta clone Elb197
2.28.2.9.5.1.11244 OTU 1 seq
prokMSA_id:38002 AF234683 sludge A15 
2.28.2.9.5.1.12107 OTU 1 seq
prokMSA_id:74807 AJ292626 WD2102 clone WD2102
2.28.2.9.5.1.12184 OTU 1 seq
prokMSA_id:75493 AY168737 clone HC-23 
2.28.2.9.5.1.14697 OTU 1 seq
prokMSA_id:22856 AJ422152 beta clone Spb03
2.28.2.9.5.1.18324 OTU 1 seq
prokMSA_id:48162 AF234681 sludge A2 
2.28.2.9.5.1.19970 OTU 1 seq
prokMSA_id:17679 AF234685 sludge A26b 
2.28.2.9.5.1.20531 OTU 1 seq
prokMSA_id:7119 AF176594 str. PM1
2.28.2.9.5.1.20550 OTU 1 seq
prokMSA_id:7123 D88007 Alcaligenes latus IAM 12599
2.28.2.9.5.1.20552 OTU 1 seq
prokMSA_id:7124 AF125877 str. DhA-73
2.28.2.9.5.1.21973 OTU 1 seq
prokMSA_id:25706 AB030613 epsilon 1063 
2.28.2.9.5.1.2327 OTU 1 seq
prokMSA_id:26649 AJ421941 beta clone Elb271
2.28.2.9.5.1.4044 OTU 1 seq
prokMSA_id:81087 AY218734 clone KD5-22 
2.28.2.9.5.1.40676 OTU 2 seqs
prokMSA_id:79302 AY188315 clone KD5-121 
prokMSA_id:81389 AY218683 clone KD8-118 
2.28.2.9.5.1.42339 OTU 7 seqs
prokMSA_id:7109 X72724 Ideonella dechloratans CCUG 30898
prokMSA_id:30280 AJ318108 beta clone BIci13
prokMSA_id:38900 AB049106 Ideonella sp. B511 
prokMSA_id:39488 AB049105 Ideonella sp. B508-1 
prokMSA_id:40398 AB049107 Ideonella sp. B513 
prokMSA_id:51665 AF236010 Beta A0640 
prokMSA_id:51906 AJ318109 beta clone BIci13b
2.28.2.9.5.1.42661 OTU 4 seqs
prokMSA_id:7115 D16213 Rubrivivax gelatinosus str. ATH 2.2.1 ATCC 17011
prokMSA_id:7118 AB016167 Rubrivivax gelatinosus str. IL144
prokMSA_id:7122 D16214 Rubrivivax gelatinosus str. A3
prokMSA_id:68337 AF487435 Rubrivivax gelatinosus strain OK3O3 
2.28.2.9.5.1.4307 OTU 1 seq
prokMSA_id:42541 AF177943 Tepidimonas ignava complete 
2.28.2.9.5.1.5523 OTU 1 seq
prokMSA_id:27656 AF359341 Nitrosospira sp. TCH719 
2.28.2.9.5.1.583 OTU 1 seq
prokMSA_id:33614 AF358003 clone LO13.11 
2.28.2.9.5.1.5931 OTU 1 seq
prokMSA_id:73442 AF309815 synthetic wastewater tmbr15-22 complete 
2.28.2.9.5.1.9325 OTU 1 seq
prokMSA_id:29302 AJ421937 beta clone Elb252
2.28.2.9.5.2 LPTX.MOBILIS_SUBGROUP 15 seqs
2.28.2.9.5.2.17945 OTU 1 seq
prokMSA_id:40205 AJ421915 beta clone Elb37
2.28.2.9.5.2.20554 OTU 1 seq
prokMSA_id:7126 X97071 Leptothrix mobilis str. Feox-1 DSM 10617
2.28.2.9.5.2.20557 OTU 1 seq
prokMSA_id:7128 AB015048 Leptothrix MBIC3364 str. MBIC3364
2.28.2.9.5.2.20941 OTU 1 seq
prokMSA_id:41229 AJ315485 isolate HuCC33
2.28.2.9.5.2.31600 OTU 2 seqs
prokMSA_id:16299 AF460988 Thiomonas sp. C02 
prokMSA_id:19232 AF460989 Thiomonas sp. C19 
2.28.2.9.5.2.32657 OTU 6 seqs
prokMSA_id:7130 AF072915 Sphaerotilus IF5 str. IF5
prokMSA_id:7131 AF072916 Sphaerotilus IF9 str. IF9
prokMSA_id:7132 AF072917 Sphaerotilus IF14 str. IF14
prokMSA_id:79735 AB087568 Sphaerotilus sp. L19 
prokMSA_id:80068 AB087561 Sphaerotilus sp. L2 
prokMSA_id:80525 AB087565 Sphaerotilus sp. L8 
2.28.2.9.5.2.33699 OTU 2 seqs
prokMSA_id:26793 AJ289885 Limnobacter thiooxidans strain CS-K2
prokMSA_id:27619 AJ295478 rape rhizosphere wr0017 
2.28.2.9.5.2.4652 OTU 1 seq
prokMSA_id:64874 AJ412674 clone 87
2.28.2.9.5.3 SPT.NATANS_SUBGROUP 1 seq
2.28.2.9.5.3.20590 OTU 1 seq
prokMSA_id:7139 Z18534 Sphaerotilus natans str. 565
2.28.2.9.5.4 LPTX.DISCOPHORA_SUBGROUP 47 seqs
2.28.2.9.5.4.10122 OTU 1 seq
prokMSA_id:29425 AJ421923 beta clone Elb123
2.28.2.9.5.4.13815 OTU 1 seq
prokMSA_id:31150 AF143842 clone AF2.2 
2.28.2.9.5.4.15373 OTU 1 seq
prokMSA_id:45838 AF236009 Beta A1004 
2.28.2.9.5.4.17528 OTU 1 seq
prokMSA_id:61836 AF529323 beta clone CLi117 
2.28.2.9.5.4.20656 OTU 1 seq
prokMSA_id:7156 AF089858 Aquabacterium Aqua2 str. Aqua2
2.28.2.9.5.4.20654 OTU 1 seq
prokMSA_id:7154 AF035054 Aquabacterium commune str. B8
2.28.2.9.5.4.20725 OTU 1 seq
prokMSA_id:7175 AB008801 Leptothrix sp. str. HS
2.28.2.9.5.4.20689 OTU 1 seq
prokMSA_id:7165 AF035050 Aquabacterium citratiphilum str. B4
2.28.2.9.5.4.21199 OTU 1 seq
prokMSA_id:40687 AJ422176 beta clone Spb298
2.28.2.9.5.4.30154 OTU 2 seqs
prokMSA_id:7170 L33974 Leptothrix discophora str. SP-6 ATCC 51168
prokMSA_id:7171 X97070 Leptothrix cholodnii str. Mulder 5 CCM 1827
2.28.2.9.5.4.3067 OTU 1 seq
prokMSA_id:79724 AB087571 Leptothrix sp. L10 
2.28.2.9.5.4.41654 OTU 10 seqs
prokMSA_id:7151 AF035052 Aquabacterium parvum str. B6
prokMSA_id:7155 U51102 str. BrG2
prokMSA_id:35403 AF385528 Leptothrix sp. oral clone AV011a 
prokMSA_id:42874 AY050585 clone GOUTA14 
prokMSA_id:56335 AJ319546 beta clone Michigan-6
prokMSA_id:61846 AF529318 beta clone CLi22 
prokMSA_id:64752 AJ319574 beta clone Thailand-5-QC
prokMSA_id:65415 AF513107 clone 8 
prokMSA_id:81133 AY214206 clone ZZ15C9 
prokMSA_id:81341 AY214207 clone ZZ15C11 
2.28.2.9.5.4.41667 OTU 3 seqs
prokMSA_id:7150 AB006851 Matsuebacter chitosanotabidus
prokMSA_id:37907 AB024307 Matsuebacter chitosanotabidus 
prokMSA_id:37911 AB024306 Matsuebacter sp. 13 
2.28.2.9.5.4.41714 OTU 2 seqs
prokMSA_id:65422 AF513100 clone 62 
prokMSA_id:65430 AF513089 clone 15A 
2.28.2.9.5.4.42732 OTU 4 seqs
prokMSA_id:7146 AB021407 DSM 654
prokMSA_id:19409 AF236008 Beta A1040 
prokMSA_id:40534 AF236007 Beta A0647 
prokMSA_id:43210 AF236006 Beta A0618 
2.28.2.9.5.4.42730 OTU 9 seqs
prokMSA_id:7145 AB003623 Roseateles depolymerans str. 61A DSM 11813
prokMSA_id:7147 AF068803 clone VC2.1 Bac29
prokMSA_id:7157 AB003624 Roseateles depolymerans str. 61B2
prokMSA_id:19861 AF368755 Pseudomonas saccharophila 
prokMSA_id:28560 AF445700 beta clone SM1G08 
prokMSA_id:42662 AF371861 clone p-3415-SwA2 
prokMSA_id:77923 AJ496446 Beta CTE108 strain CTE108
prokMSA_id:80990 AF468327 clone ARKMP-82 
prokMSA_id:81741 AY227003 beta clone ARKMP-94 
2.28.2.9.5.4.42737 OTU 5 seqs
prokMSA_id:7148 AB022678 str. MBIC3293
prokMSA_id:7149 AB003625 Roseateles depolymerans str. 61B2 DSM 11814
prokMSA_id:7160 AB013424 str. MC11
prokMSA_id:7161 AB013425 str. MC12
prokMSA_id:7163 AB003626 Roseateles depolymerans str. 61B2 DSM 11814
2.28.2.9.5.4.4911 OTU 1 seq
prokMSA_id:50434 AJ422173 beta clone Spb280
2.28.2.9.5.4.8923 OTU 1 seq
prokMSA_id:82250 AY218609 clone KD3-41 
2.28.2.9.5.99 VARIOUS 6 seqs
2.28.2.9.5.99.34551 OTU 4 seqs
prokMSA_id:7133 AF125876 str. DhA-71
prokMSA_id:73389 AF385534 Leptothrix sp. oral clone AW043 
prokMSA_id:79664 AY152824 Schlegelia thermodepolymerans 
prokMSA_id:80077 AJ512945 Caenibacterium thermophilum strain N2-680T
2.28.2.9.5.99.41309 OTU 2 seqs
prokMSA_id:25579 AJ422161 beta clone Spb111
prokMSA_id:34633 AJ422163 beta clone Spb132
2.28.2.9.99 VARIOUS 6 seqs
2.28.2.9.99.35490 OTU 6 seqs
prokMSA_id:7164 Z18533 Leptothrix discophora str. SS-1 ATCC 43182
prokMSA_id:7173 L33975 Leptothrix discophora str. SS-1 ATCC 43182
prokMSA_id:71257 AF289155 beta clone PRD01a007B 
prokMSA_id:72353 AF289161 beta clone PRD01b001B 
prokMSA_id:72406 AF289162 beta clone PRD01b002B 
prokMSA_id:74457 AF289164 beta clone PRD01b004B 
2.28.2.10 BURKHOLDERIA_GROUP 222 seqs
2.28.2.10.1 BUR.NORIMBERGENSIS_SUBGROUP 14 seqs
2.28.2.10.1.33591 OTU 14 seqs
prokMSA_id:7184 AJ011509 Burkholderia IpA-51 str. IpA-51
prokMSA_id:7185 X92188 Burkholderia JB1 str. JB1
prokMSA_id:17884 AF247692 Pandoraea sp. G5056 
prokMSA_id:22226 AF247694 Pandoraea sp. G7835 
prokMSA_id:35338 AF139175 Pandoraea pulmonicola 
prokMSA_id:35988 AF247695 Pandoraea sp. G8107 
prokMSA_id:46842 AF247696 Pandoraea sp. G9278 
prokMSA_id:48497 AJ313026 Burkholderia sp. MN 182.2 isolate MN 182.2
prokMSA_id:63605 AY043377 Pandoraea sp. AU1775 
prokMSA_id:70261 AF247697 Pandoraea sp. G9805 
prokMSA_id:70742 AF247699 Pandoraea sp. G3307 
prokMSA_id:70855 AF247693 Pandoraea sp. G5084 
prokMSA_id:72667 AF139171 Pandoraea norimbergensis 
prokMSA_id:72789 AF139176 Pandoraea sputorum 
2.28.2.10.2 MEALYBUG_SYMBIONTS 27 seqs
2.28.2.10.2.20761 OTU 1 seq
prokMSA_id:7186 M68889 endosymbiont of mealybug Pseudococcus longispinus
2.28.2.10.2.20764 OTU 1 seq
prokMSA_id:7187 M68888 endosymbiont of mealybug Dysmicoccus neobrivipes
2.28.2.10.2.20766 OTU 1 seq
prokMSA_id:7188 M68890 endosymbiont of mealybug Pseudococcus maritimus
2.28.2.10.2.2311 OTU 1 seq
prokMSA_id:63946 AF476098 Candidatus Tremblaya princeps from Vryburgia brevicruris and
2.28.2.10.2.2313 OTU 1 seq
prokMSA_id:63947 AF476097 Candidatus Tremblaya princeps from Vryburgia amaryllidis and
2.28.2.10.2.2336 OTU 1 seq
prokMSA_id:63957 AF476088 Candidatus Tremblaya princeps from Maconellicoccus australie
2.28.2.10.2.2334 OTU 1 seq
prokMSA_id:63955 AF476089 Candidatus Tremblaya princeps from Maconellicoccus hirsutus 
2.28.2.10.2.2338 OTU 1 seq
prokMSA_id:63958 AF476086 Candidatus Tremblaya princeps from Ferrisia sp. and 23S gene
2.28.2.10.2.2340 OTU 1 seq
prokMSA_id:63959 AF476084 Candidatus Tremblaya princeps from Erium globosum and 23S ge
2.28.2.10.2.2354 OTU 1 seq
prokMSA_id:63960 AF476085 Candidatus Tremblaya princeps from Ferrisia malvastra and 23
2.28.2.10.2.2355 OTU 1 seq
prokMSA_id:63961 AF476083 Candidatus Tremblaya princeps from Dysmicoccus neobrevipes a
2.28.2.10.2.2357 OTU 1 seq
prokMSA_id:63962 AF476081 Candidatus Tremblaya princeps from Cyphonococcus alpinus and
2.28.2.10.2.2358 OTU 1 seq
prokMSA_id:63963 AF476077 Candidatus Tremblaya princeps from Australicoccus grevilleae
2.28.2.10.2.2359 OTU 1 seq
prokMSA_id:63964 AF476079 Candidatus Tremblaya princeps from Antonina pretiosa and 23S
2.28.2.10.2.2360 OTU 1 seq
prokMSA_id:63966 AF476080 Candidatus Tremblaya princeps from Anisococcus ephedrae and 
2.28.2.10.2.2760 OTU 1 seq
prokMSA_id:42363 AB030021 Beta-symbiont of Antonina crawii 
2.28.2.10.2.30190 OTU 2 seqs
prokMSA_id:63949 AF476092 Candidatus Tremblaya princeps from Planococcus ficus and 23S
prokMSA_id:63951 AF476091 Candidatus Tremblaya princeps from Planococcus citri and 23S
2.28.2.10.2.37192 OTU 3 seqs
prokMSA_id:55941 AF476082 Candidatus Tremblaya princeps from Dysmicoccus brevipes and 
prokMSA_id:63992 AF481102 Candidatus Tremblaya princeps MviN mviN cds; protein L13 rpL
prokMSA_id:63994 AF481103 Candidatus Tremblaya princeps transaldolase tal phosphoribos
2.28.2.10.2.42813 OTU 2 seqs
prokMSA_id:63948 AF476095 Candidatus Tremblaya princeps from Pseudococcus viburni and 
prokMSA_id:63953 AF476093 Candidatus Tremblaya princeps from Pseudococcus longispinus 
2.28.2.10.2.42816 OTU 2 seqs
prokMSA_id:63954 AF476090 Candidatus Tremblaya princeps from Nipaecoccus exocarpi and 
prokMSA_id:63956 AF476087 Candidatus Tremblaya princeps from Melanococcus albizziae an
2.28.2.10.2.42814 OTU 2 seqs
prokMSA_id:63950 AF476094 Candidatus Tremblaya princeps from Paracoccus nothofagicola 
prokMSA_id:63952 AF476096 Candidatus Tremblaya princeps from Sarococcus comis and 23S 
2.28.2.10.3 BUR.ANDROPOGONIS_SUBGROUP 4 seqs
2.28.2.10.3.20767 OTU 1 seq
prokMSA_id:7189 X67037 Burkholderia andropogonis ATCC 23061
2.28.2.10.3.20783 OTU 1 seq
prokMSA_id:7190 AB021422 Pseudomonas woodsii ATCC 19311
2.28.2.10.3.42062 OTU 2 seqs
prokMSA_id:74893 AJ519656 beta clone GuBH2-AG-43
prokMSA_id:76131 AJ519655 beta clone GuBH2-AD-29
2.28.2.10.4 BUR.GLATHEI_SUBGROUP 89 seqs
2.28.2.10.4.11447 OTU 1 seq
prokMSA_id:38074 AJ292646 WD2109 clone WD2109
2.28.2.10.4.11436 OTU 1 seq
prokMSA_id:21765 AF234707 sludge A21b 
2.28.2.10.4.12558 OTU 1 seq
prokMSA_id:46075 AJ252660 Agricultural soil clone SC-I-84 
2.28.2.10.4.13418 OTU 1 seq
prokMSA_id:53380 AF247494 Burkholderia sp. S2.1 
2.28.2.10.4.15353 OTU 1 seq
prokMSA_id:76574 AJ534623 beta clone JG36-TzT-215
2.28.2.10.4.18654 OTU 1 seq
prokMSA_id:16881 AJ300694 Burkholderia sp. GR34 strain GR34
2.28.2.10.4.19915 OTU 1 seq
prokMSA_id:77828 AB088048 Burkholderia sp. VE22 
2.28.2.10.4.19972 OTU 1 seq
prokMSA_id:24899 AF361021 Burkholderia sp. NAP1 
2.28.2.10.4.20164 OTU 1 seq
prokMSA_id:39961 AJ302311 Burkholderia sp. STM678 strain STM678
2.28.2.10.4.21338 OTU 1 seq
prokMSA_id:7209 U96941 Burkholderia graminis str. AUS35
2.28.2.10.4.21361 OTU 1 seq
prokMSA_id:7213 AF074711 Burkholderia EN-B3
2.28.2.10.4.21363 OTU 1 seq
prokMSA_id:7214 AF074712 Burkholderia EN-B9
2.28.2.10.4.21392 OTU 1 seq
prokMSA_id:7223 AF061872 Burkholderia RP007 str. RP007
2.28.2.10.4.21398 OTU 1 seq
prokMSA_id:7228 Y17052 Burkholderia glathei str. N 15 LMG 14190
2.28.2.10.4.21424 OTU 1 seq
prokMSA_id:7230 AB025790 Burkholderia NF100
2.28.2.10.4.30142 OTU 2 seqs
prokMSA_id:7215 AB024310 Burkholderia kuranei
prokMSA_id:7216 AJ238360 Burkholderia brasilensis str. M130
2.28.2.10.4.3595 OTU 1 seq
prokMSA_id:71936 AY040365 Burkholderia hospita 
2.28.2.10.4.39780 OTU 4 seqs
prokMSA_id:7218 AB015530 str. BD1-33
prokMSA_id:19103 AF164059 Diazotroph str. BA126 
prokMSA_id:26180 AF227856 str. 96444 
prokMSA_id:71461 AJ318182 beta clone BIsii8
2.28.2.10.4.40661 OTU 8 seqs
prokMSA_id:7194 AF184929 str. TFD3
prokMSA_id:17796 AF312214 Burkholderia sp. BM16 complete 
prokMSA_id:30241 AF164045 Burkholderia tropicalis strain AB98 
prokMSA_id:49852 AJ420332 Burkholderia tropicalis strain Ppe8
prokMSA_id:77289 AY128105 Burkholderia tropicalis strain MOc-725 complete 
prokMSA_id:77461 AY128104 Burkholderia tropicalis strain MTo-672 complete 
prokMSA_id:77530 AY128103 Burkholderia tropicalis strain MTo-293 complete 
prokMSA_id:80462 AY221956 Burkholderia unamae strain MTl-641 
2.28.2.10.4.41443 OTU 2 seqs
prokMSA_id:39502 AF439776 Burkholderia sp. JRB1 
prokMSA_id:74760 AJ292638 WD206 clone WD206
2.28.2.10.4.41575 OTU 3 seqs
prokMSA_id:63247 AF523975 clone FW145 
prokMSA_id:63263 AF523956 clone FW2 
prokMSA_id:63267 AF523953 clone FW66 
2.28.2.10.4.41607 OTU 2 seqs
prokMSA_id:38660 AJ300687 Burkholderia sp. K14 strain K14
prokMSA_id:41467 AJ300686 Burkholderia sp. SH1b strain SH1b
2.28.2.10.4.42163 OTU 3 seqs
prokMSA_id:26099 AF263278 Burkholderia sacchari 
prokMSA_id:47552 AF262932 Burkholderia sp. JS150 
prokMSA_id:80740 AY221955 Burkholderia unamae strain MCo-762 
2.28.2.10.4.42549 OTU 4 seqs
prokMSA_id:7210 U91570 Burkholderia caryophylli str. MCII-8
prokMSA_id:19015 AJ300688 Burkholderia sp. S512 strain S512
prokMSA_id:20853 AJ300693 Burkholderia sp. WR19X strain WR19X
prokMSA_id:42336 AJ300692 Burkholderia sp. RW36 strain RW36
2.28.2.10.4.42628 OTU 2 seqs
prokMSA_id:7219 Y17010 Burkholderia caribiensis str. MWAP71
prokMSA_id:18587 AB041772 Burkholderia sp. TH2 
2.28.2.10.4.42810 OTU 2 seqs
prokMSA_id:7224 X67039 Burkholderia caryophylli ATCC 25418
prokMSA_id:7226 AB021423 Burkholderia caryophylli ATCC 25418
2.28.2.10.4.42820 OTU 37 seqs
prokMSA_id:7192 U37344 Burkholderia sp
prokMSA_id:7193 AF184931 str. TFD6
prokMSA_id:7195 AF184928 str. TFD20
prokMSA_id:7196 AF184926 str. TFD13
prokMSA_id:7198 AJ011508 Burkholderia sp. str. DhA-54
prokMSA_id:7199 AF068011 Burkholderia VUN10013 str. VUN 10 013
prokMSA_id:7202 U37342 Burkholderia sp
prokMSA_id:7203 AF052387 Burkholderia 'SAP II' str. SAP II
prokMSA_id:7221 U96936 Burkholderia phenazinium str. 1A LMG 2247
prokMSA_id:17921 AJ292642 WD266 clone WD266
prokMSA_id:19267 AY049943 Beta A30-1 
prokMSA_id:19558 AJ292644 WD285 clone WD285
prokMSA_id:20984 AF247492 Burkholderia sp. A6.33GD 
prokMSA_id:21144 AJ292645 WD289 clone WD289
prokMSA_id:23866 AJ292639 WD227 clone WD227
prokMSA_id:26306 AJ292637 WD202 clone WD202
prokMSA_id:27725 AJ300696 Burkholderia sp. OY715 strain OY715
prokMSA_id:28307 AF215705 Burkholderia sp. LMG 16225 
prokMSA_id:34989 AY038617 clone GL182.9 
prokMSA_id:37179 AJ292640 WD258 clone WD258
prokMSA_id:37450 AJ300689 Burkholderia sp. 13SM strain 13SM
prokMSA_id:38190 AJ292671 WD2106 clone WD2106
prokMSA_id:40058 AF210314 Burkholderia sp. HY1 complete 
prokMSA_id:42224 AF215704 Burkholderia sp. LMG 19076 
prokMSA_id:50006 AF247493 Burkholderia sp. C4.7 
prokMSA_id:51147 AY049940 Beta A40-2 
prokMSA_id:53786 AF215706 Burkholderia sp. LMG 16307 
prokMSA_id:58605 AY134849 Burkholderia sp. ICD 
prokMSA_id:68457 AF459796 Symbiont cf. Burkholderia of Acromyrmex octospinosus 
prokMSA_id:73256 AF452132 Burkholderia sp. LMG 21262 
prokMSA_id:74759 AF247495 Burkholderia sp. S4.11 
prokMSA_id:75150 AY154376 Burkholderia phenazinium isolate Hg 16 
prokMSA_id:75878 AY154373 Burkholderia phenazinium isolate Hg 10 
prokMSA_id:76456 AY154375 Burkholderia phenazinium isolate Hg 14 
prokMSA_id:76898 AY154372 Burkholderia phenazinium isolate Hg 8 
prokMSA_id:80321 AJ544691 Burkholderia fungorum strain W566
prokMSA_id:80829 AJ544690 Burkholderia fungorum strain Sw120
2.28.2.10.4.5156 OTU 1 seq
prokMSA_id:36067 AJ252633 Agricultural soil clone SC-I-39 
2.28.2.10.4.5812 OTU 1 seq
prokMSA_id:49998 AF247815 Burkholderia sp. NAH1 
2.28.2.10.4.7408 OTU 1 seq
prokMSA_id:50723 AJ300698 Burkholderia sp. NF23 strain NF23
2.28.2.10.4.8599 OTU 1 seq
prokMSA_id:73771 AF371863 clone p-3623-18B3 
2.28.2.10.5 BUR.THAILANDENSIS_SUBGROUP 15 seqs
2.28.2.10.5.29174 OTU 2 seqs
prokMSA_id:30439 AJ251634 Scutellospora persica E28 endosymbiont 
prokMSA_id:50390 AJ251635 Scutellospora persica E09 endosymbiont 
2.28.2.10.5.30309 OTU 2 seqs
prokMSA_id:7236 S55000 Burkholderia mallei str. China 7 ATCC 23344
prokMSA_id:32997 AH004174 Burkholderia mallei ATCC 23344 Genomic 1340 nt 2 segments
2.28.2.10.5.31709 OTU 11 seqs
prokMSA_id:7238 AJ131790 Burkholderia pseudomallei
prokMSA_id:7239 U91839 Burkholderia pseudomallei str. 1026b
prokMSA_id:7240 AF110187 Burkholderia mallei str. GB6
prokMSA_id:7241 AF110188 Burkholderia mallei str. GB8
prokMSA_id:17136 AF093054 Burkholderia pseudomallei isolate L2 
prokMSA_id:36691 AF093057 Burkholderia pseudomallei isolate V685 
prokMSA_id:39013 AF093058 Burkholderia pseudomallei isolate V688 
prokMSA_id:46605 AF093056 Burkholderia pseudomallei isolate V684 
prokMSA_id:48735 AF093047 Burkholderia pseudomallei isolate H1 
prokMSA_id:52375 AF093060 Burkholderia pseudomallei isolate V830 
prokMSA_id:82150 AY198339 Burkholderia pseudomallei 
2.28.2.10.6 BUR.CEPACIA_SUBGROUP 8 seqs
2.28.2.10.6.1172 OTU 1 seq
prokMSA_id:41507 AY049942 Beta A35-1 
2.28.2.10.6.19504 OTU 1 seq
prokMSA_id:56109 AF467301 Xanthomonas sp. clone 88_5_1 
2.28.2.10.6.21507 OTU 1 seq
prokMSA_id:7260 U67162 Thiomonas cuprina str. H5 DSM 5495
2.28.2.10.6.21542 OTU 1 seq
prokMSA_id:7280 U16140 Burkholderia sp
2.28.2.10.6.30335 OTU 2 seqs
prokMSA_id:7244 S55001 Burkholderia gladioli EY 3258
prokMSA_id:32920 AH004175 Burkholderia gladioli Genomic 1343 nt 2 segments
2.28.2.10.6.42815 OTU 2 seqs
prokMSA_id:50273 AF150698 Elbe River snow isolate Iso18 
prokMSA_id:59538 AF538753 Enrichment culture clone 0.1LB-F 
2.28.2.10.99 VARIOUS 65 seqs
2.28.2.10.99.41256 OTU 11 seqs
prokMSA_id:7227 U96935 Burkholderia glathei str. N 15 LMG 14190
prokMSA_id:22064 AJ292641 WD263 clone WD263
prokMSA_id:51110 AJ292647 WD2114 clone WD2114
prokMSA_id:66043 AF512827 Burkholderia sordicola strain SNU 020123 
prokMSA_id:66044 AF512826 Burkholderia sordicola strain S5-B 
prokMSA_id:75333 AF475063 Candidatus Burkholderia kirkii strain 19536779 complete 
prokMSA_id:75398 AF475065 Candidatus Burkholderia kirkii strain 835396 complete 
prokMSA_id:75885 AF475068 Candidatus Burkholderia kirkii strain 835462 complete 
prokMSA_id:76358 AF475067 Candidatus Burkholderia kirkii strain 835430 complete 
prokMSA_id:76440 AF475066 Candidatus Burkholderia kirkii strain 835429 complete 
prokMSA_id:76693 AF475064 Candidatus Burkholderia kirkii strain 19981825 complete 
2.28.2.10.99.42451 OTU 54 seqs
prokMSA_id:7237 U91838 Burkholderia thailandensis str. E264 ATCC 700388
prokMSA_id:7242 L28675 Burkholderia cepacia str. G4
prokMSA_id:7247 U37340 Burkholderia sp
prokMSA_id:7248 Y18703 Burkholderia multivorans LMG 13010
prokMSA_id:7249 AF043302 Burkholderia vietnamiensis str. AMMD
prokMSA_id:7250 AF097530 Burkholderia cepacia str. Ballard 717; Starr PC 25 ATCC 2541
prokMSA_id:7251 AF097531 Burkholderia multivorans LMG 14293
prokMSA_id:7252 AF097532 Burkholderia cepacia LMG 12614t2
prokMSA_id:7253 AF097533 Burkholderia cepacia LMG 14294
prokMSA_id:7254 AF097534 Burkholderia vietnamiensis str. TVV75 LMG 10929
prokMSA_id:7255 AB015606 Burkholderia cepacia str. KP24
prokMSA_id:7258 AB008002 Burkholderia sp. str. MBIC3837
prokMSA_id:7261 U96928 Burkholderia vietnamiensis str. TVV75
prokMSA_id:7264 U96931 Burkholderia glumae LMG 2196
prokMSA_id:7266 U96929 Burkholderia vietnamiensis str. TVV70
prokMSA_id:7267 X67038 Burkholderia gladioli ATCC 10248
prokMSA_id:7269 AB024491 Burkholderia gladioli subsp. gladioli str. NIAS 1065
prokMSA_id:7270 AB023646 Burkholderia gladioli
prokMSA_id:7271 AB023647 Burkholderia gladioli
prokMSA_id:7273 U96930 Burkholderia pyrrocinia str. 2327 LMG 14191
prokMSA_id:7275 U96937 Burkholderia m35b str. m35b
prokMSA_id:7276 U96938 Burkholderia C3B1M str. C3B1M
prokMSA_id:7279 U96927 Burkholderia cepacia str. Ballard 717; Starr PC 25 ATCC 2541
prokMSA_id:17335 AB021389 Burkholderia cocovenenans strain ATCC 33664T
prokMSA_id:19296 AF265235 Burkholderia cepacia genomovar III 
prokMSA_id:19447 AY028444 Burkholderia ambifaria 
prokMSA_id:21561 AF311971 Burkholderia cepacia isolate LS2.4 
prokMSA_id:24062 AF093048 Burkholderia pseudomallei Ara+ biotype isolate S94019 
prokMSA_id:27685 AB041730 Burkholderia sp. CAB-02 
prokMSA_id:27839 AJ300697 Burkholderia sp. ON1 strain ON1
prokMSA_id:27908 AF226727 Burkholderia sp. casida 
prokMSA_id:32065 AJ300685 Burkholderia sp. SH1 strain SH1a
prokMSA_id:32496 AF335494 Burkholderia cepacia 
prokMSA_id:34839 AF311970 Burkholderia cepacia isolate LMG 12614 
prokMSA_id:35609 AF219125 Burkholderia sp. AB2 
prokMSA_id:40802 AB051408 Burkholderia cepacia 
prokMSA_id:45950 AF311972 Burkholderia cepacia isolate WS11.7 
prokMSA_id:46233 AF219126 Burkholderia sp. AB101 
prokMSA_id:48688 AF175314 Burkholderia cepacia 
prokMSA_id:49014 AJ300684 Burkholderia sp. NCPPB3025 strain NCPPB 3025
prokMSA_id:52847 AJ420880 Burkholderia anthina strain R-4183
prokMSA_id:53682 AB013111 Burkholderia gladioli 
prokMSA_id:54199 AJ300695 Burkholderia sp. RR8 strain RR8
prokMSA_id:56209 AF494540 Burkholderia sp. BPC2 
prokMSA_id:59707 AB091761 Burkholderia cepacia complete 
prokMSA_id:62903 E10021 Pseudomonas 
prokMSA_id:71097 AF148554 Burkholderia stabilis 
prokMSA_id:72468 AF148555 Burkholderia multivorans 
prokMSA_id:74106 AF148556 Burkholderia cepacia genomovar III 
prokMSA_id:77747 AJ440715 Burkholderia pyrrocinia strain R1904
prokMSA_id:78142 AJ440714 Burkholderia pyrrocinia strain R13058
prokMSA_id:78347 AJ440713 Burkholderia pyrrocinia strain R11805
prokMSA_id:80730 AJ544072 Burkholderia anthina strain BHS1
prokMSA_id:81718 AY207313 Burkholderia cepacia strain B9 
2.28.2.11 OXALOBACTER_GROUP 63 seqs
2.28.2.11.10540 OTU 1 seq
prokMSA_id:75238 AJ518781 beta clone JG37-AG-7
2.28.2.11.11170 OTU 1 seq
prokMSA_id:22305 Y08845 J.agaricidamnosum 
2.28.2.11.11844 OTU 1 seq
prokMSA_id:60344 AF534196 clone Glu14 
2.28.2.11.13225 OTU 1 seq
prokMSA_id:61192 AY080915 clone UP9 
2.28.2.11.14230 OTU 1 seq
prokMSA_id:75756 AJ518783 beta clone JG37-AG-125
2.28.2.11.149 OTU 1 seq
prokMSA_id:7335 D14256 Duganella zoogloeoides IAM 12670
2.28.2.11.16793 OTU 1 seq
prokMSA_id:32294 AB006750 beta 
2.28.2.11.172 OTU 1 seq
prokMSA_id:7343 X92555 Pseudomonas lemoignei
2.28.2.11.17247 OTU 1 seq
prokMSA_id:70208 AY013693 Banisveld landfill BVC71 
2.28.2.11.173 OTU 1 seq
prokMSA_id:7344 AB021375 ATCC 17989
2.28.2.11.174 OTU 1 seq
prokMSA_id:7345 Y11585 str. Mena 23/3-3c DSM 6920
2.28.2.11.18193 OTU 1 seq
prokMSA_id:63192 AJ496038 Oxalobacter sp. p8E 
2.28.2.11.1861 OTU 1 seq
prokMSA_id:80182 AY191273 Herbaspirillum seropedicae strain Z152 
2.28.2.11.222 OTU 1 seq
prokMSA_id:7364 U49757 Oxalobacter formigenes str. OxB ATCC 35274
2.28.2.11.224 OTU 1 seq
prokMSA_id:7366 U49750 Oxalobacter formigenes str. BLISS
2.28.2.11.225 OTU 1 seq
prokMSA_id:7369 U49754 Oxalobacter formigenes str. OXCR
2.28.2.11.2439 OTU 1 seq
prokMSA_id:79646 AY198109 clone ARKMP91 
2.28.2.11.2703 OTU 1 seq
prokMSA_id:80296 AY198108 clone ARKMP92 
2.28.2.11.30207 OTU 2 seqs
prokMSA_id:79614 AY198107 clone ARKMP90 
prokMSA_id:79952 AF468331 clone ARKMP-113 
2.28.2.11.31295 OTU 2 seqs
prokMSA_id:43330 AJ295484 rape rhizosphere wr0025 
prokMSA_id:49894 AJ295516 rape rhizosphere wr0070 
2.28.2.11.3352 OTU 1 seq
prokMSA_id:43089 AB054963 beta 1275a 
2.28.2.11.3885 OTU 1 seq
prokMSA_id:79839 AF468325 clone ARKMP-27 
2.28.2.11.39 OTU 1 seq
prokMSA_id:26384 AJ408960 clone HuCA4
2.28.2.11.39180 OTU 5 seqs
prokMSA_id:79895 AF468241 clone ARKDMS-28 
prokMSA_id:79901 AF468348 Arctic sea ice ARK10172 
prokMSA_id:80342 AF468346 Arctic sea ice ARK10162 
prokMSA_id:80776 AF468323 clone ARKMP-22 
prokMSA_id:80971 AY198105 clone ARKMP10 
2.28.2.11.40452 OTU 5 seqs
prokMSA_id:79836 AF468345 Arctic sea ice ARK10157 
prokMSA_id:80338 AF468329 clone ARKMP-56 
prokMSA_id:80818 AY198106 clone ARKMP80 
prokMSA_id:80915 AF468301 clone ARKICE-119 
prokMSA_id:80972 AF468330 clone ARKMP-110 
2.28.2.11.40685 OTU 6 seqs
prokMSA_id:7306 AF164049 Herbaspirillum sp. BA10 
prokMSA_id:7307 AF164050 Herbaspirillum sp. BA11 
prokMSA_id:7308 AF164051 Herbaspirillum sp. BA12 
prokMSA_id:7311 AF164054 Herbaspirillum sp. BA16 
prokMSA_id:7314 AF164063 Herbaspirillum sp. BA161 
prokMSA_id:42481 AF364861 Herbaspirillum sp. BA17 
2.28.2.11.41087 OTU 2 seqs
prokMSA_id:7309 AF164052 Herbaspirillum sp. BA14 
prokMSA_id:7310 AF164053 Herbaspirillum sp. BA15 
2.28.2.11.41069 OTU 4 seqs
prokMSA_id:7295 AB021424 Herbaspirillum rubrisubalbicans ATCC 19308
prokMSA_id:7300 AJ238357 Herbaspirillum frisingense str. 75B
prokMSA_id:30348 AF164065 Herbaspirillum seropedicae strain X8 
prokMSA_id:80103 AY191276 Herbaspirillum seropedicae strain M2 
2.28.2.11.41073 OTU 5 seqs
prokMSA_id:7283 Y10146 Herbaspirillum seropedicae str. Z67 DSM 6445
prokMSA_id:7304 AJ238361 Herbaspirillum seropedicae str. Z67
prokMSA_id:7313 AF164062 Herbaspirillum seropedicae strain BA153 
prokMSA_id:16576 AB049133 Herbaspirillum sp. B501 
prokMSA_id:29908 AF214642 Nitrogen-fixing COL 
2.28.2.11.4135 OTU 1 seq
prokMSA_id:43158 AF236011 Beta A0823 
2.28.2.11.42336 OTU 2 seqs
prokMSA_id:23044 AF236013 Beta A1020 
prokMSA_id:36180 AF336360 Beta Wuba70 
2.28.2.11.42338 OTU 2 seqs
prokMSA_id:7371 U49756 Oxalobacter formigenes str. OXK
prokMSA_id:50320 AF371862 clone p-2518-18B5 
2.28.2.11.42783 OTU 3 seqs
prokMSA_id:55297 AF529324 beta clone CLi13 
prokMSA_id:61808 AF529358 beta clone CLs99 
prokMSA_id:61811 AF529353 beta clone CLs79 
2.28.2.11.6082 OTU 1 seq
prokMSA_id:80693 AF468324 clone ARKMP-20 
2.28.2.11.7094 OTU 1 seq
prokMSA_id:58574 AJ505863 Herbaspirillum sp. PIV-34-1 strain PIV-34-1
2.28.2.11.9198 OTU 1 seq
prokMSA_id:74451 AF361023 Herbaspirillum sp. NAH4 
2.28.2.12 PNB.NECESSARIUS_GROUP 11 seqs
2.28.2.12.13938 OTU 1 seq
prokMSA_id:23357 AF361194 beta clone 27 
2.28.2.12.21129 OTU 1 seq
prokMSA_id:71396 AY145606 beta clone DC11-0-2 
2.28.2.12.250 OTU 1 seq
prokMSA_id:7375 U85123 clone ACK-L6
2.28.2.12.255 OTU 1 seq
prokMSA_id:7378 Z99998 str. LD17
2.28.2.12.34298 OTU 7 seqs
prokMSA_id:7373 X93019 Polynucleobacter necessarius
prokMSA_id:7374 U85122 clone ACK-L5
prokMSA_id:7376 U85124 clone ACK-C4
prokMSA_id:16472 AJ289997 FukuN33 
prokMSA_id:44315 AF361192 beta clone 06 
prokMSA_id:70009 AF289154 beta clone PRD01a006B 
prokMSA_id:72324 AJ290013 FukuS35 
2.28.2.13 RAL.EUTROPHA_GROUP 10 seqs
2.28.2.13.16260 OTU 1 seq
prokMSA_id:24387 AB051682 Ralstonia sp. HAB-08 
2.28.2.13.17455 OTU 1 seq
prokMSA_id:61812 AF529352 beta clone CLs76 
2.28.2.13.19532 OTU 1 seq
prokMSA_id:33253 AF361022 Ralstonia sp. NAH8 
2.28.2.13.20448 OTU 1 seq
prokMSA_id:56268 AF500587 Ralstonia sp. AU3369 
2.28.2.13.42664 OTU 2 seqs
prokMSA_id:60579 AF407722 clone B44 
prokMSA_id:60601 AF407697 clone G06 
2.28.2.13.42854 OTU 2 seqs
prokMSA_id:47468 AF300325 Ralstonia taiwanensis strain LMG 19425 
prokMSA_id:70917 AJ306571 Ralstonia gilardii isolate 009\817
2.28.2.13.7376 OTU 1 seq
prokMSA_id:44156 AB066228 Ralstonia sp. NI1 
2.28.2.13.8240 OTU 1 seq
prokMSA_id:20728 AF239160 Ralstonia sp. PHS1 
2.28.2.14 RAL.SOLANACEARUM_GROUP 3 seqs
2.28.2.14.3 RAL.SOLAN4_SUBGROUP 3 seqs
2.28.2.14.3.3115 OTU 1 seq
prokMSA_id:79758 AJ539233 Ralstonia insidiosa strain CCUG 46388
2.28.2.14.3.31515 OTU 2 seqs
prokMSA_id:7432 U16144 Ralstonia solanacearum str. H1
prokMSA_id:70664 U16144 Ralstonia solanacearum 
2.28.2.99 VARIOUS 115 seqs
2.28.2.99.32448 OTU 6 seqs
prokMSA_id:6533 AF072922 clone S28
prokMSA_id:6534 AF072927 clone A1-13
prokMSA_id:6788 AF072923 clone H12
prokMSA_id:6790 AF072926 clone H23
prokMSA_id:6798 AF072920 clone H20
prokMSA_id:51803 AF234757 sludge S40 
2.28.2.99.40559 OTU 2 seqs
prokMSA_id:69852 AY123794 Nitrosomonas sp. Nm143 
prokMSA_id:77870 AB089100 beta clone:Rs-A34
2.28.2.99.42646 OTU 107 seqs
prokMSA_id:7380 M32021 Ralstonia eutropha str. 335 R.Y. Stanier ATCC 17697
prokMSA_id:7381 AF184930 str. TFD43
prokMSA_id:7382 Y10825 Ralstonia eutropha str. DS185
prokMSA_id:7383 AB007998 Ralstonia sp. str. MBIC3838
prokMSA_id:7384 X97093 str. TM24
prokMSA_id:7385 AF067657 str. JHH 1448
prokMSA_id:7387 D88001 Ralstonia sp. str. CT14
prokMSA_id:7388 AF191737 Cupriavidus necator ATCC 43291
prokMSA_id:7389 AB015605 Ralstonia eutropha str. KT1
prokMSA_id:7391 Y10824 Ralstonia eutropha str. CH34
prokMSA_id:7392 AF085226 Ralstonia paucula LMG 3413
prokMSA_id:7398 AJ011503 Ralstonia sp. str. BKME-6
prokMSA_id:7399 D88009 Ralstonia sp. str. CT12
prokMSA_id:7400 AF027407 Ralstonia eutropha str. JS705
prokMSA_id:7401 AF098288 Ralstonia FRA01 str. FRA01
prokMSA_id:7402 AB017488 Ralstonia MBIC3902 str. MBIC3902
prokMSA_id:7404 U28232 Ralstonia solanacearum str. R780
prokMSA_id:7405 U28233 Ralstonia solanacearum str. R142
prokMSA_id:7406 U28238 Pseudomonas syzygii str. R058
prokMSA_id:7407 U28237 Pseudomonas syzygii str. R001
prokMSA_id:7408 AB021403 Ralstonia Pseudomonas syzygii ATCC 49543
prokMSA_id:7410 U28236 str. R223
prokMSA_id:7411 U28235 str. R233
prokMSA_id:7412 U28234 str. R506
prokMSA_id:7415 L37367 Ralstonia pickettii str. PKO1
prokMSA_id:7422 X67041 Ralstonia solanacearum ACH 0171
prokMSA_id:7423 X67040 Ralstonia solanacearum ACH 092
prokMSA_id:7424 U27983 Ralstonia solanacearum ACH 0732
prokMSA_id:7427 U27984 Ralstonia solanacearum str. R288
prokMSA_id:7428 U27985 Ralstonia solanacearum ACH 092
prokMSA_id:7429 U27986 Ralstonia solanacearum ACH 0171
prokMSA_id:7430 U27987 Ralstonia solanacearum str. R791
prokMSA_id:7431 U28220 Ralstonia solanacearum CIP 365
prokMSA_id:7434 U28221 Ralstonia solanacearum str. PDDCC1727; K60 ATCC 1696
prokMSA_id:7435 U28225 Ralstonia solanacearum str. Br150
prokMSA_id:7436 U28223 Ralstonia solanacearum str. R207
prokMSA_id:7437 U28231 Ralstonia solanacearum str. R639
prokMSA_id:7438 U28222 Ralstonia solanacearum CIP 210
prokMSA_id:7439 U28227 Ralstonia solanacearum CIP 10
prokMSA_id:7442 U28230 Ralstonia solanacearum str. R633
prokMSA_id:7443 U28229 Ralstonia solanacearum str. R634
prokMSA_id:7444 U28226 Ralstonia solanacearum CIP 238
prokMSA_id:7445 U28224 Ralstonia solanacearum ACH 0158
prokMSA_id:7448 X67035 Ralstonia solanacearum ACH 0158
prokMSA_id:7449 X67036 Ralstonia solanacearum ATCC 11696
prokMSA_id:7450 U28228 Ralstonia solanacearum str. R483
prokMSA_id:18760 AY053492 AT425_EubE3 
prokMSA_id:19239 AF207891 Ralstonia solanacearum strain CFBP1036 
prokMSA_id:21182 AB051681 Ralstonia sp. HAB-02 
prokMSA_id:23650 AJ270259 Ralstonia thomasii strain RAL4 MC5
prokMSA_id:24261 AF280433 Ralstonia detusculanense 
prokMSA_id:26889 AF396930 Pseudomonas sp. BUV1 
prokMSA_id:27013 AF207897 Ralstonia solanacearum strain MAFF211266 
prokMSA_id:27700 AB050020 Ralstonia sp. BA-0323 
prokMSA_id:29028 AJ270257 Ralstonia thomasii strain LBV407 UCL310
prokMSA_id:29604 AB038143 Ralstonia sp. P-10 
prokMSA_id:31873 AJ270260 Ralstonia pickettii strain RAL01 LMG 7160
prokMSA_id:33270 AB024607 Ralstonia solanacearum isolate:MAFF 301520
prokMSA_id:37841 AJ270256 Ralstonia thomasii strain RAL13 LBV371
prokMSA_id:38402 AB024609 Ralstonia solanacearum isolate:MAFF 211271
prokMSA_id:38789 AF390082 Ralstonia sp. W-15 
prokMSA_id:39252 AB024605 Ralstonia solanacearum isolate:MAFF 301527
prokMSA_id:39540 AB045276 Ralstonia sp. APF11 
prokMSA_id:40253 AB024608 Ralstonia solanacearum isolate:MAFF 301559
prokMSA_id:40792 AF301897 Ralstonia sp. U2 
prokMSA_id:41961 AF251026 Ralstonia sp. LD35 
prokMSA_id:42127 AF207896 Ralstonia solanacearum strain NCPPB342 
prokMSA_id:42763 AF207895 Ralstonia solanacearum strain CFBP734 
prokMSA_id:43651 AB024606 Ralstonia solanacearum isolate:MAFF 301522
prokMSA_id:44709 AF368759 Pseudomonas sp. MF254A 
prokMSA_id:44713 AF207893 Ralstonia solanacearum strain NCPPB1018 
prokMSA_id:47343 AF207892 Ralstonia solanacearum strain CFBP712 
prokMSA_id:48001 AF207894 Ralstonia solanacearum strain CFBP2146 
prokMSA_id:48140 AJ270258 Ralstonia thomasii strain LMG6866
prokMSA_id:50357 AB031995 Ralstonia sp. KN1 
prokMSA_id:50403 NC_003296 Ralstonia solanacearum megaplasmid complete 
prokMSA_id:50666 AY047217 Ralstonia basilensis 
prokMSA_id:50898 AB024604 Ralstonia solanacearum isolate:MAFF 211266
prokMSA_id:52220 AB051684 Ralstonia sp. HAB-18 
prokMSA_id:52615 E34476 and method detecting KB1 strain by using in the 
prokMSA_id:53615 AF312020 Ralstonia campinensis strain WS2 
prokMSA_id:56519 AF500585 Ralstonia sp. AU0626 
prokMSA_id:56669 AY043381 Ralstonia sp. AU626 
prokMSA_id:57520 AB095535 Blood disease BananaE 
prokMSA_id:57720 AJ507103 Ralstonia sp. CCUG 46389 strain CCUG 46389
prokMSA_id:58388 AL646064 Ralstonia solanacearum GMI1000 chromosome complete ; segment
prokMSA_id:58389 AL646081 Ralstonia solanacearum GMI1000 megaplasmid complete ; segmen
prokMSA_id:58390 AL646073 Ralstonia solanacearum GMI1000 chromosome complete ; segment
prokMSA_id:58391 AL646072 Ralstonia solanacearum GMI1000 chromosome complete ; segment
prokMSA_id:58406 AB007995 Ralstonia eutropha 
prokMSA_id:61100 NC_003295 Ralstonia solanacearum complete genome
prokMSA_id:63606 AY043380 Ralstonia sp. AU378 
prokMSA_id:64267 AF453507 
prokMSA_id:66050 AF500586 Ralstonia sp. AU1618 
prokMSA_id:66058 AF500584 Ralstonia sp. AU3801 
prokMSA_id:66059 AF500583 Ralstonia sp. AU3313 
prokMSA_id:67342 AF494541 Ralstonia sp. BPC3 
prokMSA_id:70450 AF312021 Ralstonia basilensis strain ER121 
prokMSA_id:71428 AY040358 Ralstonia campinensis strain LMG 20579 
prokMSA_id:72179 AY040349 Ralstonia campinensis strain LMG 20568 
prokMSA_id:72352 AF434171 Ralstonia sp. AV5BG 
prokMSA_id:72714 AY005032 Burkholderia sp. oral clone AK168 
prokMSA_id:72788 AY040355 Ralstonia campinensis strain LMG 20576 
prokMSA_id:73191 AJ313021 Ralstonia sp. MN 43 isolate MN 43
prokMSA_id:73500 AF312022 Ralstonia basilensis strain DSM 11853 
prokMSA_id:81066 AY216796 Ralstonia solanacearum 
prokMSA_id:82456 AY216798 Ralstonia sp. Q3-8/14 
2.28.3 GAMMA_SUBDIVISION 3533 seqs
2.28.3.1 HALORHODOSPIRA_GROUP 4 seqs
2.28.3.1.27843 OTU 2 seqs
prokMSA_id:62637 AJ318525 Halorhodospira neutrophila strain SG3301
prokMSA_id:62638 AJ318526 Halorhodospira neutrophila strain SG3304
2.28.3.1.994 OTU 1 seq
prokMSA_id:7452 X93483 Halorhodospira halochloris str. BN 9851; 51/12
2.28.3.1.996 OTU 1 seq
prokMSA_id:7457 X93474 Halorhodospira halophila str. BN 9624; 51/1
2.28.3.2 ARHODOMONAS_AND_NITROCOCCUS_GROUP 17 seqs
2.28.3.2.1006 OTU 1 seq
prokMSA_id:7460 L35510 Nitrococcus mobilis ATCC 25380
2.28.3.2.17535 OTU 1 seq
prokMSA_id:62495 AF513947 Ectothiorhodospiraceae clone LA7-B9 
2.28.3.2.18847 OTU 1 seq
prokMSA_id:40387 AF339744 gamma V3 
2.28.3.2.3201 OTU 1 seq
prokMSA_id:79794 AF453545 gamma clone ML812M-2 
2.28.3.2.33508 OTU 2 seqs
prokMSA_id:7461 AF114783 Alkalispirillum mobilis
prokMSA_id:46869 AJ404972 Alcalilimnicola halodurans isolate 34Alc
2.28.3.2.40876 OTU 5 seqs
prokMSA_id:55809 AF452607 gamma clone ML310M-42 
prokMSA_id:56490 AF452601 gamma clone ML110J-20 
prokMSA_id:62733 AF507823 gamma clone ML617.5J-3 
prokMSA_id:63855 AF452603 gamma clone ML110J-5 
prokMSA_id:79965 AF453543 gamma clone ML812M-17 
2.28.3.2.42167 OTU 5 seqs
prokMSA_id:62740 AF507818 gamma clone ML602J-47 
prokMSA_id:63849 AF452609 gamma clone ML320J-36 
prokMSA_id:63852 AF452608 gamma clone ML320J-31 
prokMSA_id:63857 AF452602 gamma clone ML110J-38 
prokMSA_id:80413 AF453540 gamma clone ML615J-15 
2.28.3.2.9576 OTU 1 seq
prokMSA_id:58874 AF406554 Arsenite-oxidizing MLHE-1 
2.28.3.3 ECTOTHIORHODOSPIRA_GROUP 18 seqs
2.28.3.3.1017 OTU 1 seq
prokMSA_id:7468 X93478 Ectothiorhodospira vacuolata str. BN 9512; beta1 DSM 2111
2.28.3.3.1016 OTU 1 seq
prokMSA_id:7467 X93480 Ectothiorhodospira shaposhnikovii str. BN 9912; Truper 8115 
2.28.3.3.1028 OTU 1 seq
prokMSA_id:7471 X93476 Ectothiorhodospira marina str. BN 9914; Matheron BA 1010 DSM
2.28.3.3.10361 OTU 1 seq
prokMSA_id:60168 AJ347044 clone TK38
2.28.3.3.1227 OTU 1 seq
prokMSA_id:71608 AF126547 Thioalcalovibrio nitratus 
2.28.3.3.1690 OTU 1 seq
prokMSA_id:78921 AJ536882 clone JG30-KF-CM35
2.28.3.3.18671 OTU 1 seq
prokMSA_id:69845 AF126546 Thioalcalovibrio versutus 
2.28.3.3.25313 OTU 3 seqs
prokMSA_id:49286 AB054139 HOC5 
prokMSA_id:49861 AB054170 HOC36 
prokMSA_id:52080 AB054172 HOC38 
2.28.3.3.32113 OTU 3 seqs
prokMSA_id:62739 AF507820 gamma clone ML623J-18 
prokMSA_id:79902 AF453541 gamma clone ML615J-17 
prokMSA_id:80652 AF453542 gamma clone ML615J-6 
2.28.3.3.34297 OTU 4 seqs
prokMSA_id:7464 C. X93475 Ectothiorhodospira haloalkaliphila str. BN 9902;
prokMSA_id:7465 AF084511 Ectothiorhodospira 'Bogoria Red' str. Bogoria Red
prokMSA_id:28189 AF384207 Ectothiorhodospira sp. 'Bogoria Red' strain RB1 
prokMSA_id:32582 AF384206 Ectothiorhodospira sp. 'Bogoria Red' strain RM1 
2.28.3.3.5488 OTU 1 seq
prokMSA_id:58382 AF361096 clone SBRH10 
2.28.3.4 THIOBACILLUS_GROUP 132 seqs
2.28.3.4.1 THB.FERROOXIDANS_SUBGROUP 48 seqs
2.28.3.4.1.1073 OTU 1 seq
prokMSA_id:7497 AF068810 VC2.1 Bac43 complete 
2.28.3.4.1.1072 OTU 1 seq
prokMSA_id:7495 AF023264 Thiobacillus sp. str. C
2.28.3.4.1.13351 OTU 1 seq
prokMSA_id:60589 AF407710 clone G73 
2.28.3.4.1.14124 OTU 1 seq
prokMSA_id:38412 AF407410 clone RB13C4 
2.28.3.4.1.14540 OTU 1 seq
prokMSA_id:53544 AF362022 Acidithiobacillus ferrooxidans strain ATCC 19859 ; -23S inte
2.28.3.4.1.18169 OTU 1 seq
prokMSA_id:32422 AJ243934 Acidithiobacillus cuprithermicus 
2.28.3.4.1.30874 OTU 2 seqs
prokMSA_id:19136 AF339743 Acidithiobacillus sp. V1 
prokMSA_id:21015 AF359940 Acidithiobacillus thiooxidans 
2.28.3.4.1.34317 OTU 6 seqs
prokMSA_id:7480 X72851 Thiobacillus thiooxidans
prokMSA_id:7494 Z29975 Thiobacillus caldus str. KU DSM 8584
prokMSA_id:7498 AF137369 TC 1
prokMSA_id:7499 AB023405 str. GO-1
prokMSA_id:48511 AF460986 Acidithiobacillus caldus P5-10 
prokMSA_id:65356 AF513711 Acidithiobacillus caldus 
2.28.3.4.1.39139 OTU 29 seqs
prokMSA_id:7482 Y11596 str. NFe4
prokMSA_id:7483 X98210 Thiobacillus sp
prokMSA_id:7484 X75266 Thiobacillus ferrooxidans str. N-Fe2
prokMSA_id:7485 X75269 Thiobacillus thiooxidans str. B-53
prokMSA_id:7487 Y11595 str. NFe4
prokMSA_id:7489 X86769 clone cOS1
prokMSA_id:7491 X75267 Thiobacillus ferrooxidans str. N-Fe4
prokMSA_id:7500 X75268 Thiobacillus ferrooxidans str. N-Fe3
prokMSA_id:18606 AF376019 Acidithiobacillus sp. NO-25 
prokMSA_id:19600 AF407404 clone RA13C4 
prokMSA_id:19750 AB039820 Thiobacillus ferrooxidans 
prokMSA_id:23599 AJ278719 Acidithiobacillus ferrooxidans strain ATCC33020
prokMSA_id:26996 AJ278721 Acidithiobacillus ferrooxidans strain SS6
prokMSA_id:29211 AF407402 clone RA13C22 
prokMSA_id:29934 AF376018 Acidithiobacillus sp. NO-8 
prokMSA_id:31580 AF376020 Acidithiobacillus sp. NO-37 
prokMSA_id:34427 AJ318178 gamma clone BIsi9
prokMSA_id:42143 AF213056 Thiobacillus sp. Fras2 
prokMSA_id:43942 AF407401 clone RA13C21 
prokMSA_id:45494 AF376017 Acidithiobacillus sp. KSC1 
prokMSA_id:53234 AJ278722 Acidithiobacillus ferrooxidans 23S and internal transcribed 
prokMSA_id:53334 AJ278723 Acidithiobacillus ferrooxidans 23S and internal transcribed 
prokMSA_id:56606 AJ459804 Acidithiobacillus albertensis strain DSM 14366
prokMSA_id:58315 AF543507 clone BA11 
prokMSA_id:67355 AJ457804 Acidithiobacillus ferrooxidans strain CC1
prokMSA_id:67356 AJ457806 Acidithiobacillus ferrooxidans strain BRGM1
prokMSA_id:70237 AJ278718 Acidithiobacillus ferrooxidans strain ATCC23270T
prokMSA_id:79379 AF465604 Acidithiobacillus ferrooxidans strain ATCC23270 
prokMSA_id:79580 AF465606 Acidithiobacillus ferrooxidans strain TFI 
2.28.3.4.1.42531 OTU 3 seqs
prokMSA_id:22453 AB080298 Acidithiobacillus sp. SH 
prokMSA_id:33408 AF329205 Acidithiobacillus ferrooxidans 
prokMSA_id:38200 AF329204 Acidithiobacillus sp. SSP 
2.28.3.4.1.5251 OTU 1 seq
prokMSA_id:58306 AF543512 clone BA45 
2.28.3.4.1.9301 OTU 1 seq
prokMSA_id:66601 AJ459801 Thermithiobacillus tepidarius strain DSM 3134
2.28.3.4.2 NSC.OCEANI_SUBGROUP 12 seqs
2.28.3.4.2.19113 OTU 1 seq
prokMSA_id:77717 AJ298748 Nitrosococcus halophilus isolate Nc4
2.28.3.4.2.19503 OTU 1 seq
prokMSA_id:63326 AF523888 clone RCP2-96 
2.28.3.4.2.20227 OTU 1 seq
prokMSA_id:71278 AF508991 Nitrosococcus oceani strain SWC19 
2.28.3.4.2.33706 OTU 2 seqs
prokMSA_id:51207 AF287298 Nitrosococcus halophilus Nc4 
prokMSA_id:77857 AJ298727 Nitrosococcus oceani isolate Nc1
2.28.3.4.2.35441 OTU 7 seqs
prokMSA_id:7502 M96395 Nitrosococcus oceani str. C-107
prokMSA_id:18602 AF363287 Nitrosococcus oceani 
prokMSA_id:56278 AF508992 Nitrosococcus oceani strain AFC3 
prokMSA_id:71252 AF508987 Nitrosococcus oceani strain AFC24P 
prokMSA_id:72817 AF508989 Nitrosococcus oceani strain AFC36 
prokMSA_id:73060 AF508990 Nitrosococcus oceani strain AFC5P 
prokMSA_id:78358 AJ298726 Nitrosococcus oceani isolate Nc10
2.28.3.4.3 BEG.ALBA_SUBGROUP 17 seqs
2.28.3.4.3.10465 OTU 1 seq
prokMSA_id:22253 AF255642 gamma clone Ebpr12 
2.28.3.4.3.12465 OTU 1 seq
prokMSA_id:60455 AF532771 Beggiatoa sp. clone Limfjorden L10 
2.28.3.4.3.1628 OTU 1 seq
prokMSA_id:7510 AF064543 Beggiatoa 'Monterey Canyon'
2.28.3.4.3.1629 OTU 1 seq
prokMSA_id:7511 AF035956 Beggiatoa 'Bay of Concepcion' str. Bay of Concepcion
2.28.3.4.3.21232 OTU 1 seq
prokMSA_id:79213 AF382118 clone ZA3605c 
2.28.3.4.3.3429 OTU 1 seq
prokMSA_id:58104 AF498721 Ellin339 
2.28.3.4.3.41505 OTU 2 seqs
prokMSA_id:62226 AY115530 Thioploca sp. 'Lake Constance' 
prokMSA_id:67230 AF452892 Thioploca sp. 'Lake Biwa' 
2.28.3.4.3.41554 OTU 2 seqs
prokMSA_id:60451 AF532775 Beggiatoa sp. clone Limfjorden L9 
prokMSA_id:73639 AF532769 Beggiatoa sp. clone Dangast A9 
2.28.3.4.3.42315 OTU 3 seqs
prokMSA_id:60452 AF532774 Beggiatoa sp. clone Limfjorden L8 
prokMSA_id:60454 AF532772 Beggiatoa sp. clone Limfjorden L22 
prokMSA_id:60456 AF532770 Beggiatoa sp. clone Limfjorden D4 
2.28.3.4.3.5537 OTU 1 seq
prokMSA_id:27669 AJ292676 WD2124 clone WD2124
2.28.3.4.3.6455 OTU 1 seq
prokMSA_id:81307 AF110276 Beggiatoa sp. MS-81-1c 
2.28.3.4.3.9352 OTU 1 seq
prokMSA_id:73838 AF498689 Ellin307 
2.28.3.4.3.9968 OTU 1 seq
prokMSA_id:81779 AF110274 Beggiatoa alba 
2.28.3.4.4 THC.GELATINOSA_ASSEMBLAGE 12 seqs
2.28.3.4.4.1636 OTU 1 seq
prokMSA_id:7518 AJ224438 Thiocystis violascens DSM 198
2.28.3.4.4.1637 OTU 1 seq
prokMSA_id:7519 Y12372 Thiocystis minor DSM 178
2.28.3.4.4.1656 OTU 1 seq
prokMSA_id:7523 Y11315 Thiocystis violacea str. 2711 N. Pfennig DSM 207
2.28.3.4.4.17713 OTU 1 seq
prokMSA_id:78198 AJ401209 Allochromatium sp. AT2202 
2.28.3.4.4.26674 OTU 2 seqs
prokMSA_id:20680 AF384210 Chromatium sp. RW 
prokMSA_id:22729 AF384208 Chromatium sp. NM2 
2.28.3.4.4.30055 OTU 2 seqs
prokMSA_id:7516 Y11317 Thiocystis gelatinosa str. 2611 DSMZ 215
prokMSA_id:7517 D50655 Thiocystis gelatinosa
2.28.3.4.4.34067 OTU 3 seqs
prokMSA_id:7520 AJ223234 Chromatium okenii DSM 169
prokMSA_id:7521 Y12376 Chromatium okenii
prokMSA_id:7522 AJ006221 str. clone 359
2.28.3.4.4.5615 OTU 1 seq
prokMSA_id:57798 AY098903 clone SBRC_30 
2.28.3.4.5 TCP.ROSEA_SUBGROUP 10 seqs
2.28.3.4.5.15606 OTU 1 seq
prokMSA_id:32089 AF127020 Thiothrix I 
2.28.3.4.5.1662 OTU 1 seq
prokMSA_id:7526 Y11316 Thiorhodococcus minor str. HA2P ATCC 700259
2.28.3.4.5.1668 OTU 1 seq
prokMSA_id:7529 AB015514 str. BD1-1
2.28.3.4.5.1688 OTU 1 seq
prokMSA_id:7533 AF112999 Thiocapsa roseopersicina str. M11
2.28.3.4.5.3136 OTU 1 seq
prokMSA_id:79765 AF453551 gamma clone ML516-J10 
2.28.3.4.5.34085 OTU 4 seqs
prokMSA_id:7530 AJ006062 Thiocapsa rosea str. 6611 DSM 235
prokMSA_id:7531 AJ006213 Thiocapsa roseopersicina str. ML2
prokMSA_id:7532 AF112998 Thiocapsa roseopersicina str. 5811
prokMSA_id:7534 AF113000 Thiocapsa roseopersicina str. 1711
2.28.3.4.5.5714 OTU 1 seq
prokMSA_id:74025 AJ242772 Thiocapsa sp. BM-5 
2.28.3.4.6 MCH.PURPURATUM_SUBGROUP 33 seqs
2.28.3.4.6.11715 OTU 1 seq
prokMSA_id:29624 AF314424 PHOS-HE54 
2.28.3.4.6.11922 OTU 1 seq
prokMSA_id:52529 AJ252618 Agricultural soil clone SC-I-15 
2.28.3.4.6.13014 OTU 1 seq
prokMSA_id:67781 AF420361 isolate C1_B009 
2.28.3.4.6.1699 OTU 1 seq
prokMSA_id:7539 X84316 Rhabdochromatium marinum str. 8315-5 DSM 5261
2.28.3.4.6.1714 OTU 1 seq
prokMSA_id:7544 AJ006059 clone 335
2.28.3.4.6.1712 OTU 1 seq
prokMSA_id:7542 AF154086 clone BPC022
2.28.3.4.6.1717 OTU 1 seq
prokMSA_id:7546 AJ240987 clone Sva0091
2.28.3.4.6.1718 OTU 1 seq
prokMSA_id:7547 U14727 symbiont of Laxus sp. found in Belize
2.28.3.4.6.1726 OTU 1 seq
prokMSA_id:7550 U24110 endosymbiont of Inanidrilus leukodermatus S-oxidizing
2.28.3.4.6.1728 OTU 1 seq
prokMSA_id:7553 AF104472 unnamed organism
2.28.3.4.6.1730 OTU 1 seq
prokMSA_id:7554 X93472 Halochromatium glycolicum str. BN 3201
2.28.3.4.6.17325 OTU 1 seq
prokMSA_id:70247 AJ010124 Thiorhodovobrio winogradskyi strain 4910/06511
2.28.3.4.6.1734 OTU 1 seq
prokMSA_id:7557 X98597 Halochromatium salexigens str. 6310 DSM 4395
2.28.3.4.6.1735 OTU 1 seq
prokMSA_id:7559 X78718 str. Thd2
2.28.3.4.6.1743 OTU 1 seq
prokMSA_id:7561 AB015252 str. JTB148
2.28.3.4.6.1750 OTU 1 seq
prokMSA_id:7567 AJ240989 clone Sva0318
2.28.3.4.6.1770 OTU 1 seq
prokMSA_id:7572 AJ006212 Amoebobacter purpureus str. ML1
2.28.3.4.6.19223 OTU 1 seq
prokMSA_id:77763 AJ401213 Thiococcus sp. AT2206 
2.28.3.4.6.20165 OTU 1 seq
prokMSA_id:71248 Y12373 Thiocapsa pfennigii 
2.28.3.4.6.20868 OTU 1 seq
prokMSA_id:77961 AJ401211 Thiococcus sp. AT2204 
2.28.3.4.6.33148 OTU 4 seqs
prokMSA_id:7541 AJ006063 Lamprocystis roseopersicina DSM 229
prokMSA_id:7543 AJ006057 clone 136
prokMSA_id:7564 AJ223235 Amoebobacter purpureus str. ThSchl2 DSM 4197
prokMSA_id:7565 AJ006058 clone 261
2.28.3.4.6.34252 OTU 3 seqs
prokMSA_id:7540 AJ006214 Thiorhodovibrio winogradskyi str. SSP1 DSM 6702
prokMSA_id:7570 AB016986 Thiorhodovibrio winogradskyi str. MBIC2776T
prokMSA_id:7573 Y12368 Thiorhodovibrio sp
2.28.3.4.6.3626 OTU 1 seq
prokMSA_id:71945 AJ010125 Thiocapsa sp. strain 8320
2.28.3.4.6.42794 OTU 2 seqs
prokMSA_id:62475 AF513943 Chromatiaceae clone LA7-B30N 
prokMSA_id:62498 AF513942 Chromatiaceae clone LA4-B63N 
2.28.3.4.6.8274 OTU 1 seq
prokMSA_id:80907 AY193142 clone Bol37 
2.28.3.4.6.8978 OTU 1 seq
prokMSA_id:75050 AJ518784 gamma clone JG37-AG-14
2.28.3.4.6.9969 OTU 1 seq
prokMSA_id:43810 AF328856 Olavius algarvensis sulfur-oxidizing endosymbiont 
2.28.3.5 ACHROMATIUM_ASSEMBLAGE 103 seqs
2.28.3.5.10046 OTU 1 seq
prokMSA_id:37274 AF170421 Sulfur-oxidizing OBII5 
2.28.3.5.11697 OTU 1 seq
prokMSA_id:66921 AJ306780 clone SHA-100
2.28.3.5.11876 OTU 1 seq
prokMSA_id:76026 AJ532712 gamma clone JG34-KF-155
2.28.3.5.11931 OTU 1 seq
prokMSA_id:76053 AJ518785 gamma clone JG37-AG-87
2.28.3.5.12129 OTU 1 seq
prokMSA_id:74812 AF235130 Gamma KT0813 
2.28.3.5.12994 OTU 1 seq
prokMSA_id:67775 AF420364 isolate C1_B021 
2.28.3.5.14401 OTU 1 seq
prokMSA_id:24022 AB042414 Maorithyas hadalis gill thioautotophic symbiont II ssrRNA 
2.28.3.5.15223 OTU 1 seq
prokMSA_id:69316 AY145601 gamma clone DC8-80-1 
2.28.3.5.15627 OTU 1 seq
prokMSA_id:31454 AF223299 gamma B2M60 
2.28.3.5.16773 OTU 1 seq
prokMSA_id:32280 U62131 Solemya terraeregina gill symbiont 
2.28.3.5.17406 OTU 1 seq
prokMSA_id:32355 AF255638 gamma clone Ebpr13 
2.28.3.5.1745 OTU 1 seq
prokMSA_id:78950 AJ536860 gamma clone JG30-KF-C10
2.28.3.5.1776 OTU 1 seq
prokMSA_id:7577 AF165909 str. Alvin #2837
2.28.3.5.1778 OTU 1 seq
prokMSA_id:7578 AB015583 str. BD7-8
2.28.3.5.1804 OTU 1 seq
prokMSA_id:7585 L25711 symbiont of Anodontia phillipiana bivalve mollusc gill
2.28.3.5.1806 OTU 1 seq
prokMSA_id:7586 AF170359 Dechloromarinus chlorophilus str. NSS
2.28.3.5.1807 OTU 1 seq
prokMSA_id:7587 AB015248 str. JTB23
2.28.3.5.18071 OTU 1 seq
prokMSA_id:70339 AF181991 Sulfur-oxidizing NDII1.2 
2.28.3.5.18333 OTU 1 seq
prokMSA_id:55388 AF523886 clone RCP2-54 
2.28.3.5.1837 OTU 1 seq
prokMSA_id:7593 AF129548 Achromatium JD1
2.28.3.5.1843 OTU 1 seq
prokMSA_id:7596 AF129557 Achromatium HK13
2.28.3.5.1839 OTU 1 seq
prokMSA_id:7594 AF129550 Achromatium JD8
2.28.3.5.1845 OTU 1 seq
prokMSA_id:7598 X84979 symbiont of Codakia orbicularis gill
2.28.3.5.19110 OTU 1 seq
prokMSA_id:77715 AJ535226 gamma clone Hyd24-13
2.28.3.5.21231 OTU 1 seq
prokMSA_id:79212 AB099937 sequences clone: IheB2-13
2.28.3.5.21341 OTU 1 seq
prokMSA_id:18424 AY034139 Thiobacillus prosperus 
2.28.3.5.24 OTU 1 seq
prokMSA_id:79330 AB099938 sequences clone: IheB2-23
2.28.3.5.2458 OTU 1 seq
prokMSA_id:7606 X84980 symbiont of Lucina pectinata gill
2.28.3.5.2461 OTU 1 seq
prokMSA_id:7608 AJ010596 Achromatium minus
2.28.3.5.2486 OTU 1 seq
prokMSA_id:7614 AB015537 str. BD2-7
2.28.3.5.2491 OTU 1 seq
prokMSA_id:7617 X95229 symbiont of Lucina nassula
2.28.3.5.2493 OTU 1 seq
prokMSA_id:7618 AB022713 str. KI89C
2.28.3.5.2496 OTU 1 seq
prokMSA_id:7619 AF165908 str. Alvin #2839
2.28.3.5.2514 OTU 1 seq
prokMSA_id:7620 U77482 unnamed organism
2.28.3.5.2518 OTU 1 seq
prokMSA_id:7628 L25709 symbiont of Solemya reidi gill
2.28.3.5.2519 OTU 1 seq
prokMSA_id:7629 AF154087 clone BPC023
2.28.3.5.2535 OTU 1 seq
prokMSA_id:7634 AB013829 str. 46.m
2.28.3.5.2540 OTU 1 seq
prokMSA_id:7639 L10949 marine snow associated clone agg47
2.28.3.5.2560 OTU 1 seq
prokMSA_id:7641 AF165907 str. Shinkai #6500
2.28.3.5.2561 OTU 1 seq
prokMSA_id:7642 AB015250 str. JTB35
2.28.3.5.2562 OTU 1 seq
prokMSA_id:7643 AB015253 str. JTB254
2.28.3.5.2564 OTU 1 seq
prokMSA_id:7649 M90415 symbiont of Solemya velum
2.28.3.5.2563 OTU 1 seq
prokMSA_id:7646 AJ240974 clone Sva0115
2.28.3.5.2577 OTU 1 seq
prokMSA_id:7650 U41049 unnamed organism
2.28.3.5.2635 OTU 1 seq
prokMSA_id:42308 AF402973 clone 
2.28.3.5.2958 OTU 1 seq
prokMSA_id:57450 AJ441234 gamma clone P. palm A 79
2.28.3.5.31750 OTU 5 seqs
prokMSA_id:7602 AF129554 Achromatium HK3
prokMSA_id:7603 AF129555 Achromatium HK6
prokMSA_id:7604 AF129559 Achromatium HK24
prokMSA_id:7612 AF129553 Achromatium HK2
prokMSA_id:7613 AF129558 Achromatium HK15
2.28.3.5.31899 OTU 3 seqs
prokMSA_id:7591 AJ010593 Achromatium oxaliferum
prokMSA_id:7592 AJ010594 Achromatium oxaliferum
prokMSA_id:7595 AF129556 Achromatium HK9
2.28.3.5.31994 OTU 7 seqs
prokMSA_id:7621 U77479 unnamed organism
prokMSA_id:7622 U77481 unnamed organism
prokMSA_id:81388 AY129107 Endosymbiont of Escarpia laminata 
prokMSA_id:81446 AY129091 Endosymbiont of Lamellibrachia barhami 
prokMSA_id:81571 AY129113 Endosymbiont of Lamellibrachia barhami 
prokMSA_id:81637 AY129106 Endosymbiont of Escarpia laminata 
prokMSA_id:82463 AY129090 Endosymbiont of Lamellibrachia barhami 
2.28.3.5.32135 OTU 2 seqs
prokMSA_id:32189 AJ400349 marine ZD0408 
prokMSA_id:45930 AF354614 gamma Arctic97C-5 
2.28.3.5.32235 OTU 2 seqs
prokMSA_id:7583 L25707 symbiont of Lucina floridana gill
prokMSA_id:7640 L25712 symbiont of Codakia costata gill
2.28.3.5.32542 OTU 3 seqs
prokMSA_id:7630 AB015548 str. BD3-6
prokMSA_id:7631 AB015571 str. BD5-16
prokMSA_id:7632 AB015576 str. BD6-6
2.28.3.5.33258 OTU 2 seqs
prokMSA_id:7609 AF129549 Achromatium JD2
prokMSA_id:7610 AF129551 Achromatium JD13
2.28.3.5.34278 OTU 2 seqs
prokMSA_id:55790 AF420353 isolate CS_B021 
prokMSA_id:67774 AF420367 isolate C1_B038 
2.28.3.5.3471 OTU 1 seq
prokMSA_id:72559 AF170424 Sulfur-oxidizing NDII1.1 
2.28.3.5.35039 OTU 3 seqs
prokMSA_id:7636 AJ240988 clone Sva0864
prokMSA_id:7651 AJ240986 clone Sva0071
prokMSA_id:37006 AF223298 gamma B2M54 
2.28.3.5.35329 OTU 2 seqs
prokMSA_id:7616 AJ240991 clone Sva1046
prokMSA_id:7637 AJ240993 clone Sva0120
2.28.3.5.3591 OTU 1 seq
prokMSA_id:65374 AF432146 Selenate-reducing KE4OH1 
2.28.3.5.36694 OTU 4 seqs
prokMSA_id:81173 AY129108 Endosymbiont of Escarpia laminata 
prokMSA_id:81211 AY129112 Endosymbiont of Lamellibrachia sp. 1 
prokMSA_id:81952 AY129102 Endosymbiont of Escarpia laminata 
prokMSA_id:82094 AY129109 Endosymbiont of Escarpia laminata 
2.28.3.5.367 OTU 1 seq
prokMSA_id:17992 AJ400353 marine ZD0417 
2.28.3.5.3884 OTU 1 seq
prokMSA_id:79838 AF468280 clone ARKIA-12 
2.28.3.5.40331 OTU 3 seqs
prokMSA_id:81293 AY129088 Endosymbiont of unclassified escarpiid 
prokMSA_id:81502 AY129101 Endosymbiont of Seepiophila jonesi 
prokMSA_id:82064 AY129104 Endosymbiont of Seepiophila jonesi 
2.28.3.5.41028 OTU 2 seqs
prokMSA_id:63759 AF521582 Gamma IR 
prokMSA_id:65375 AF432145 Selenate-reducing AK4OH1 
2.28.3.5.41116 OTU 3 seqs
prokMSA_id:81526 AY129093 Endosymbiont of Lamellibrachia barhami 
prokMSA_id:81727 AY129103 Endosymbiont of Lamellibrachia barhami 
prokMSA_id:82451 AY129094 Endosymbiont of Lamellibrachia barhami 
2.28.3.5.42158 OTU 4 seqs
prokMSA_id:81760 AY129089 Endosymbiont of Seepiophila jonesi 
prokMSA_id:81773 AY129110 Endosymbiont of Lamellibrachia sp. 2 
prokMSA_id:82009 AY129092 Endosymbiont of Seepiophila jonesi 
prokMSA_id:82292 AY129111 Endosymbiont of Lamellibrachia sp. 2 
2.28.3.5.4339 OTU 1 seq
prokMSA_id:72638 AF170423 Sulfur-oxidizing OAII2 
2.28.3.5.4706 OTU 1 seq
prokMSA_id:49810 AJ387900 SJP-3 clone SJP-3
2.28.3.5.6820 OTU 1 seq
prokMSA_id:36242 AF268995 SBRH70 
2.28.3.5.8225 OTU 1 seq
prokMSA_id:74333 AF420355 isolate CS_B046 
2.28.3.5.8429 OTU 1 seq
prokMSA_id:80943 AF468306 clone ARKICE-74 
2.28.3.5.8641 OTU 1 seq
prokMSA_id:66569 AJ459800 Acidithiobacillus ferrooxidans strain DSM 2392
2.28.3.6 FRANCISELLA_GROUP 86 seqs
2.28.3.6.1 THTX.NIVEA_SUBGROUP 8 seqs
2.28.3.6.1.1676 OTU 1 seq
prokMSA_id:18746 AF148516 Thiothrix sp. CT3 
2.28.3.6.1.19727 OTU 1 seq
prokMSA_id:18257 AB042537 Thiothrix sp. B2-8 
2.28.3.6.1.2580 OTU 1 seq
prokMSA_id:7655 L40993 Thiothrix nivea str. JP2 DSM 5205
2.28.3.6.1.2582 OTU 1 seq
prokMSA_id:7656 U32940 Thiothrix ramosa
2.28.3.6.1.32440 OTU 4 seqs
prokMSA_id:18561 AB042542 Thiothrix eikelboomii strain:COM-A
prokMSA_id:19111 AB042541 Thiothrix eikelboomii strain:T2-1
prokMSA_id:39802 AB042539 Thiothrix eikelboomii strain:KR-A
prokMSA_id:43111 AB042819 Thiothrix eikelboomii 
2.28.3.6.2 CALYPTOGENA_SYMBIONTS_SUBGROUP 18 seqs
2.28.3.6.2.10909 OTU 1 seq
prokMSA_id:67478 AB073122 Endosymbiont of Bathymodiolus sp
2.28.3.6.2.11208 OTU 1 seq
prokMSA_id:45202 AF354606 gamma Arctic96BD-19 
2.28.3.6.2.12702 OTU 1 seq
prokMSA_id:21943 AB042413 Maorithyas hadalis gill thioautotophic symbiont I ssrRNA 
2.28.3.6.2.1617 OTU 1 seq
prokMSA_id:79550 AB099939 sequences clone: IheB2-31
2.28.3.6.2.19455 OTU 1 seq
prokMSA_id:41094 AB036709 Bathymodiolus septemdierum thioautotrophic gill symbiont 
2.28.3.6.2.2585 OTU 1 seq
prokMSA_id:7659 U29163 symbiont of mussel thioautotrophic gill
2.28.3.6.2.2593 OTU 1 seq
prokMSA_id:7660 L25713 symbiont of Vesicomya chordata gill
2.28.3.6.2.2594 OTU 1 seq
prokMSA_id:7664 AF035724 unnamed organism
2.28.3.6.2.2614 OTU 1 seq
prokMSA_id:7673 M99446 symbiont of Calyptogena magnifica
2.28.3.6.2.2616 OTU 1 seq
prokMSA_id:7675 L25718 symbiont of Calyptogena elongata gill
2.28.3.6.2.2619 OTU 1 seq
prokMSA_id:7677 M99445 symbiont of Bathymodiolus thermophilus gill
2.28.3.6.2.2615 OTU 1 seq
prokMSA_id:7674 AF035721 unnamed organism
2.28.3.6.2.41057 OTU 2 seqs
prokMSA_id:39558 AJ400348 marine ZD0405 
prokMSA_id:79347 AF382103 clone ZA2514c 
2.28.3.6.2.42914 OTU 4 seqs
prokMSA_id:7669 AF035720 unnamed organism
prokMSA_id:7670 AF035726 unnamed organism
prokMSA_id:7672 AF035725 unnamed organism
prokMSA_id:67479 AB073121 Endosymbiont of Calyptogena laubieri 
2.28.3.6.3 TMS.FRISIA_SUBGROUP 23 seqs
2.28.3.6.3.17686 OTU 1 seq
prokMSA_id:61883 AF449225 gamma clone R76-B23 
2.28.3.6.3.26321 OTU 3 seqs
prokMSA_id:7697 AF013974 Thiomicrospira frisia str. JB-A2
prokMSA_id:7699 AF013973 Thiomicrospira Art-3 str. Art-3
prokMSA_id:82186 AY216451 clone KM53 
2.28.3.6.3.2634 OTU 1 seq
prokMSA_id:7680 D86374 Hydrogenovibrio marinus str. MH-110 JCM 7688
2.28.3.6.3.2662 OTU 1 seq
prokMSA_id:7692 AF013971 Thiomicrospira SL-1 str. SL-1
2.28.3.6.3.2664 OTU 1 seq
prokMSA_id:7695 AF013978 Thiomicrospira kuenenii str. JB-A1
2.28.3.6.3.2666 OTU 1 seq
prokMSA_id:7696 AF013975 Thiomicrospira chilensis str. Ch-1
2.28.3.6.3.30459 OTU 2 seqs
prokMSA_id:7698 AJ237758 Thiomicrospira Milos-T2 str. Milos-T2
prokMSA_id:7700 AF082328 Thiomicrospira sp. str. Milos T-2
2.28.3.6.3.30633 OTU 2 seqs
prokMSA_id:7681 AJ237757 Thiomicrospira Milos-T1 str. Milos-T1
prokMSA_id:7682 AF082327 Thiomicrospira sp. str. Milos T-1
2.28.3.6.3.34650 OTU 4 seqs
prokMSA_id:7687 AF064544 Thiomicrospira L-12 str. L-12
prokMSA_id:7688 AF064545 Thiomicrospira crunogena str. XCL-2
prokMSA_id:7689 AF069959 Thiomicrospira crunogena str. MA-3 ATCC 700270
prokMSA_id:7690 AF013972 Thiomicrospira JB-B2 str. JB-B2
2.28.3.6.3.35435 OTU 2 seqs
prokMSA_id:7691 L40811 Thiomicrospira sp. str. MA2-6
prokMSA_id:7693 AF029040 clone SB-3
2.28.3.6.3.41763 OTU 2 seqs
prokMSA_id:7683 L01576 Thiomicrospira sp. str. L12
prokMSA_id:75896 AJ294334 Thiomicrospira crunogena isolate HY-62
2.28.3.6.3.42845 OTU 2 seqs
prokMSA_id:62494 AF513948 Piscirickettsia group clone LA1-B44N 
prokMSA_id:62496 AF513949 Piscirickettsia group clone LA7-B48N 
2.28.3.6.3.8246 OTU 1 seq
prokMSA_id:44251 AF354608 gamma Arctic96AD-9 
2.28.3.6.4 TMS.THYASIRAE_SUBGROUP 6 seqs
2.28.3.6.4.3104 OTU 1 seq
prokMSA_id:7704 AF126549 Thioalcalomicrobium sibericum str. AL7
2.28.3.6.4.35160 OTU 5 seqs
prokMSA_id:7702 AF016046 Thiomicrospira thyasirae str. TG-2 DSM 5322
prokMSA_id:7705 AF013976 Thiomicrospira JB-A1F str. JB-A1F
prokMSA_id:7706 L01478 Thiomicrospira thyasirae str. TG-2 DSM 5322
prokMSA_id:62732 AF507825 gamma clone ML617.5J-13 
prokMSA_id:75723 AJ532694 gamma clone Gitt-KF-166
2.28.3.6.5 MP.MARINA_SUBGROUP 22 seqs
2.28.3.6.5.3125 OTU 1 seq
prokMSA_id:7715 L10936 clone FL5
2.28.3.6.5.3130 OTU 1 seq
prokMSA_id:7719 X87339 Methylophaga thalassica ATCC 33146
2.28.3.6.5.32281 OTU 2 seqs
prokMSA_id:7716 X95459 Methylophaga marina
prokMSA_id:7721 X87338 Methylophaga marina ATCC 35842
2.28.3.6.5.34943 OTU 12 seqs
prokMSA_id:7708 U12624 Cycloclasticus pugetii str. PS-1 ATCC 51542
prokMSA_id:7709 AF093002 Cycloclasticus G str. G
prokMSA_id:7710 AF093003 Cycloclasticus E str. E
prokMSA_id:7711 AF093004 Cycloclasticus W str. W
prokMSA_id:7712 AF148215 Cycloclasticus oligotrophus
prokMSA_id:7713 U57920 Cycloclasticus N3-PA321 str. N3-PA321
prokMSA_id:7714 L34955 Cycloclasticus pugetii str. PS-1 ATCC 51542
prokMSA_id:19033 AY026915 Cycloclasticus spirillensus 
prokMSA_id:56290 AB080113 Cycloclasticus sp. E3 
prokMSA_id:61169 AB080114 Cycloclasticus sp. H4 
prokMSA_id:61170 AB080112 Cycloclasticus sp. E2 
prokMSA_id:61177 AB080111 Cycloclasticus sp. A5 
2.28.3.6.5.4144 OTU 1 seq
prokMSA_id:66020 AF384373 Methylophaga alcalica 
2.28.3.6.5.42329 OTU 3 seqs
prokMSA_id:61960 AJ244762 Methylophaga sp. V4.MO.19 
prokMSA_id:71369 AJ244761 Methylophaga sp. V4.ME.29 
prokMSA_id:71631 AJ244760 Methylophaga sp. V4.MS.17 
2.28.3.6.5.5862 OTU 1 seq
prokMSA_id:80637 AF468294 clone ARKIA-123 
2.28.3.6.5.9075 OTU 1 seq
prokMSA_id:81639 AB086228 Dibenzofuran-degrading DBF-MAK 
2.28.3.6.6 FNC.TULARENSIS_SUBGROUP 9 seqs
2.28.3.6.6.3198 OTU 1 seq
prokMSA_id:7749 AB001522 unnamed organism
2.28.3.6.6.3196 OTU 1 seq
prokMSA_id:7744 L26086 Francisella tularensis
2.28.3.6.6.32531 OTU 4 seqs
prokMSA_id:7733 U36941 Piscirickettsia salmonis str. LF-89
prokMSA_id:7735 U36940 Piscirickettsia salmonis str. EM-90
prokMSA_id:7736 U36942 Piscirickettsia salmonis str. NOR-92
prokMSA_id:71348 U55015 Piscirickettsia salmonis complete 
2.28.3.6.6.42887 OTU 2 seqs
prokMSA_id:7731 L26085 Francisella philomiragia ATCC 25015
prokMSA_id:7738 Z21933 Francisella philomiragia ATCC 25017
2.28.3.6.6.4776 OTU 1 seq
prokMSA_id:26984 AF206675 Tilapia parasite TPT-541 
2.28.3.7 DICHELOBACTER_GROUP 18 seqs
2.28.3.7.3216 OTU 1 seq
prokMSA_id:7760 AF154088 clone BPC028
2.28.3.7.3220 OTU 1 seq
prokMSA_id:7763 M35014 Cardiobacterium hominis ATCC 15826
2.28.3.7.3225 OTU 1 seq
prokMSA_id:7765 AF144696 Cardiobacterium B str. AB 2168
2.28.3.7.3223 OTU 1 seq
prokMSA_id:7764 U87826 clone v1
2.28.3.7.3228 OTU 1 seq
prokMSA_id:7766 AF144697 Cardiobacterium A str. AB 2167
2.28.3.7.3231 OTU 1 seq
prokMSA_id:7769 M35016 Dichelobacter nodosus str. 198A ATCC 27521
2.28.3.7.32808 OTU 5 seqs
prokMSA_id:7758 M90662 Thiobacillus hydrothermalis str. R3 DSM 7121
prokMSA_id:7761 U58020 Thiobacillus halophilus
prokMSA_id:19960 AF226850 Thiobacillus sp. MS02 
prokMSA_id:62497 AF513944 Chromatiaceae clone LAS-B37N 
prokMSA_id:76987 AJ294337 Halothiobacillus hydrothermalis isolate HY-66
2.28.3.7.34480 OTU 2 seqs
prokMSA_id:7759 X97534 Thiobacillus sp. str. W5
prokMSA_id:44985 AF173169 Thiobacillus neapolitanus DSM 581 
2.28.3.7.6848 OTU 1 seq
prokMSA_id:66337 AY099401 Halothiobacillus sp. RA13 
2.28.3.7.8713 OTU 1 seq
prokMSA_id:66599 AY096035 Halothiobacillus sp. WJ18 
2.28.3.7.8718 OTU 1 seq
prokMSA_id:65940 AF506987 Cardiobacterium valvarum 
2.28.3.7.876 OTU 1 seq
prokMSA_id:19288 AF170419 Halothiobacillus kellyi 
2.28.3.7.961 OTU 1 seq
prokMSA_id:78828 AJ536870 gamma clone JG30a-KF-21
2.28.3.8 XANTHOMONAS_GROUP 286 seqs
2.28.3.8.1 NV.RAMOSA_SUBGROUP 18 seqs
2.28.3.8.1.13548 OTU 1 seq
prokMSA_id:75633 AJ518786 gamma clone JG37-AG-94
2.28.3.8.1.16323 OTU 1 seq
prokMSA_id:76705 AJ534626 gamma clone JG36-TzT-191
2.28.3.8.1.18991 OTU 1 seq
prokMSA_id:78320 AB074619 gamma clone:APe4_38
2.28.3.8.1.19066 OTU 1 seq
prokMSA_id:24744 AJ301567 gamma GR-296.I.104 
2.28.3.8.1.19966 OTU 1 seq
prokMSA_id:17673 AJ313020 gamma MN 154.3 isolate MN 154.3
2.28.3.8.1.32507 OTU 2 seqs
prokMSA_id:29007 AJ295469 rape rhizosphere wr0008 
prokMSA_id:46403 AJ292675 WD284 clone WD284
2.28.3.8.1.33237 OTU 3 seqs
prokMSA_id:7774 AB021322 str. rJ4
prokMSA_id:7775 AB021323 str. rJ5
prokMSA_id:7776 AJ001271 str. LX1
2.28.3.8.1.42069 OTU 3 seqs
prokMSA_id:65452 AY102333 clone a13140 
prokMSA_id:65456 AY102329 clone a13133 
prokMSA_id:77626 AB074620 gamma clone:APe4_56
2.28.3.8.1.42927 OTU 3 seqs
prokMSA_id:7771 AJ001010 Nevskia ramosa str. Soe1 DSM 11499
prokMSA_id:7772 AJ001343 Nevskia ramosa
prokMSA_id:7773 AJ001011 Nevskia ramosa str. OL1
2.28.3.8.1.4513 OTU 1 seq
prokMSA_id:65468 AY102316 clone a13109 
2.28.3.8.1.6457 OTU 1 seq
prokMSA_id:51220 AJ292674 WD280 clone WD280
2.28.3.8.2 RHN.LINDANICLASTICUS_SUBGROUP 46 seqs
2.28.3.8.2.11595 OTU 1 seq
prokMSA_id:81982 AY218747 clone KD6-106 
2.28.3.8.2.156 OTU 1 seq
prokMSA_id:79383 AB100608 Swingsiella fulva 
2.28.3.8.2.16279 OTU 1 seq
prokMSA_id:17177 AY049941 Gamma A40-1 
2.28.3.8.2.19501 OTU 1 seq
prokMSA_id:63325 AF523890 clone RCP1-10 
2.28.3.8.2.20351 OTU 1 seq
prokMSA_id:79105 AY188327 clone KD8-68 
2.28.3.8.2.21470 OTU 1 seq
prokMSA_id:79298 AY188317 clone KD5-51 
2.28.3.8.2.21657 OTU 1 seq
prokMSA_id:71415 AJ311653 Fulvimonas soli strain LMG 19981T
2.28.3.8.2.2559 OTU 1 seq
prokMSA_id:50142 AJ307936 mRNA clone sipK9
2.28.3.8.2.2952 OTU 1 seq
prokMSA_id:26701 AJ318114 gamma clone BIci4
2.28.3.8.2.2954 OTU 1 seq
prokMSA_id:34580 AJ318146 gamma clone BIhiii13
2.28.3.8.2.3219 OTU 1 seq
prokMSA_id:50262 AF376025 Frateuria sp. NO-16 
2.28.3.8.2.3260 OTU 1 seq
prokMSA_id:7778 AF047645 clone TRA5-3
2.28.3.8.2.3286 OTU 1 seq
prokMSA_id:7780 AJ010481 Frateuria aurantia IFO 3245
2.28.3.8.2.35368 OTU 3 seqs
prokMSA_id:7777 AF039167 Rhodanobacter lindaniclasticus str. RP5557 LMG 18385
prokMSA_id:16767 AF312222 Pietermaritzburg Y17-8 
prokMSA_id:28808 AF312216 Pietermaritzburg Y14-2 
2.28.3.8.2.4045 OTU 1 seq
prokMSA_id:81089 AY218694 clone KD8-80 
2.28.3.8.2.4064 OTU 1 seq
prokMSA_id:20263 AF308875 Arsenic resistant soil 7-03 
2.28.3.8.2.41031 OTU 8 seqs
prokMSA_id:79255 AY188318 clone KD5-58 
prokMSA_id:79852 AY188295 clone KD1-149 
prokMSA_id:81196 AY218771 clone KD6-83 
prokMSA_id:81461 AY218667 clone KD9-36 
prokMSA_id:81522 AY218670 clone KD9-56 
prokMSA_id:81676 AY218723 clone KD5-100 
prokMSA_id:81880 AY218745 clone KD6-1 
prokMSA_id:82101 AY218606 clone KD3-139 
2.28.3.8.2.41756 OTU 2 seqs
prokMSA_id:80066 AY188309 clone KD4-116 
prokMSA_id:81358 AY218713 clone KD7-52 
2.28.3.8.2.42616 OTU 2 seqs
prokMSA_id:79780 AY188308 clone KD3-82 
prokMSA_id:81132 AY218756 clone KD6-20 
2.28.3.8.2.42859 OTU 2 seqs
prokMSA_id:81247 AY218729 clone KD5-12 
prokMSA_id:81357 AY218737 clone KD5-36 
2.28.3.8.2.42899 OTU 2 seqs
prokMSA_id:81363 AY218719 clone KD7-89 
prokMSA_id:82402 AY218686 clone KD8-16 
2.28.3.8.2.7244 OTU 1 seq
prokMSA_id:21240 AJ318180 gamma clone BIsii4
2.28.3.8.2.7324 OTU 1 seq
prokMSA_id:81447 AY218766 clone KD6-7 
2.28.3.8.2.7356 OTU 1 seq
prokMSA_id:81454 AY218702 clone KD7-7-110 
2.28.3.8.2.8092 OTU 1 seq
prokMSA_id:82171 AY218759 clone KD6-44 
2.28.3.8.2.8408 OTU 1 seq
prokMSA_id:81595 AY218575 clone KD2-145 
2.28.3.8.2.8882 OTU 1 seq
prokMSA_id:82232 AY218701 clone KD7-103 
2.28.3.8.2.8892 OTU 1 seq
prokMSA_id:82238 AY218740 clone KD5-73 
2.28.3.8.2.9306 OTU 1 seq
prokMSA_id:66606 AY096032 Gamma WJ2 
2.28.3.8.2.9328 OTU 1 seq
prokMSA_id:43741 AJ296563 GR-Sh1-148 clone GR-Sh1-148
2.28.3.8.2.9634 OTU 1 seq
prokMSA_id:82320 AY218596 clone KD2-87 
2.28.3.8.2.9802 OTU 1 seq
prokMSA_id:82380 AY218664 clone KD9-22 
2.28.3.8.2.9978 OTU 1 seq
prokMSA_id:67341 AF494542 Rhodanobacter sp. BPC1 
2.28.3.8.4 LYB.ANTIBIOTICUS_SUBGROUP 40 seqs
2.28.3.8.4.10200 OTU 1 seq
prokMSA_id:59535 AF538773 Enrichment culture LB-P clone LB-P 
2.28.3.8.4.11533 OTU 1 seq
prokMSA_id:81962 AY218617 clone KD3-79 
2.28.3.8.4.14919 OTU 1 seq
prokMSA_id:75877 AJ534675 gamma clone S15A-MN135
2.28.3.8.4.15201 OTU 1 seq
prokMSA_id:76525 AJ519989 Thermomonas brevis strain LMG 21746T
2.28.3.8.4.177 OTU 1 seq
prokMSA_id:78734 AJ536883 clone JG30-KF-CM58
2.28.3.8.4.19058 OTU 1 seq
prokMSA_id:17521 AF472556 Lysobacter sp. XL1 
2.28.3.8.4.19115 OTU 1 seq
prokMSA_id:77719 AB074615 gamma clone:APe9_10
2.28.3.8.4.27368 OTU 2 seqs
prokMSA_id:39084 AF445683 gamma clone SM1E05 
prokMSA_id:39919 AF445682 gamma clone SM1E04 
2.28.3.8.4.32040 OTU 2 seqs
prokMSA_id:18696 AF445726 gamma clone SM2E10 
prokMSA_id:33015 AF445723 gamma clone SM2D10 
2.28.3.8.4.32020 OTU 2 seqs
prokMSA_id:25970 AF445725 gamma clone SM2E06 
prokMSA_id:44041 AF445686 gamma clone SM1E08 
2.28.3.8.4.32354 OTU 8 seqs
prokMSA_id:7783 U15112 Pele's Vents clone PVB_25
prokMSA_id:7784 U15111 Pele's Vents clone PVB_3 PVB_5
prokMSA_id:7785 U89956 str. N4-7
prokMSA_id:7786 AF012541 str. ES-1
prokMSA_id:7788 AB016762 Xanthomonas sp. str. AK
prokMSA_id:27494 AY074793 Lysobacter sp. C3 
prokMSA_id:52059 AJ298291 Lysobacter enzymogenes strain DSM 2043T
prokMSA_id:61184 AB083480 Lysobacter sp. IB-9374 
2.28.3.8.4.3318 OTU 1 seq
prokMSA_id:7790 AB019582 Lysobacter antibioticus str. Ly a2 DSM 2044
2.28.3.8.4.3319 OTU 1 seq
prokMSA_id:7791 AB021333 str. rJ15
2.28.3.8.4.3323 OTU 1 seq
prokMSA_id:7793 AJ012228 Luteimonas mephitis str. B1953/27.1
2.28.3.8.4.33837 OTU 2 seqs
prokMSA_id:7792 AF139997 Xanthomonas ML-122 str. ML-122
prokMSA_id:50378 AF140004 Xanthomonas sp. ML-168b 
2.28.3.8.4.3896 OTU 1 seq
prokMSA_id:81039 AY218573 clone KD2-14 
2.28.3.8.4.42244 OTU 2 seqs
prokMSA_id:60986 AF531538 clone a13161 
prokMSA_id:65469 AY102313 clone a13106 
2.28.3.8.4.42323 OTU 2 seqs
prokMSA_id:76111 AJ519988 Thermomonas fusca strain LMG 21739
prokMSA_id:76350 AJ519987 Thermomonas fusca strain LMG 21738
2.28.3.8.4.42931 OTU 5 seqs
prokMSA_id:66233 AF508111 Thermomonas haemolytica isolate TJ7 
prokMSA_id:66235 AF508108 Thermomonas haemolytica isolate S5 
prokMSA_id:66236 AF508107 Thermomonas haemolytica isolate S2 
prokMSA_id:66237 AF508105 Thermomonas haemolytica isolate N22 
prokMSA_id:66239 AF508106 Thermomonas haemolytica isolate N4 
2.28.3.8.4.5913 OTU 1 seq
prokMSA_id:74091 AJ300185 Thermomonas haemolytica strain A50-7-3
2.28.3.8.4.5964 OTU 1 seq
prokMSA_id:66232 AF508110 Thermomonas haemolytica isolate TG15 
2.28.3.8.4.7496 OTU 1 seq
prokMSA_id:81488 AY218735 clone KD5-24 
2.28.3.8.4.9438 OTU 1 seq
prokMSA_id:73870 AB054969 Xanthomonas sp. 1018 
2.28.3.8.5 STE.MALTOPHILIA_SUBGROUP 49 seqs
2.28.3.8.5.12935 OTU 1 seq
prokMSA_id:44870 AJ318183 gamma clone BIsiii14
2.28.3.8.5.35403 OTU 6 seqs
prokMSA_id:7813 AJ012230 Stenotrophomonas nitritireducens str. B1910/29.1
prokMSA_id:7815 X95925 Stenotrophomonas maltophilia LMG 11114
prokMSA_id:22707 AJ318138 gamma clone BIgi7
prokMSA_id:43441 AF394168 Blackwater bioreactor BW3 
prokMSA_id:49849 AJ295421 Rape rhizosphere tsb011 
prokMSA_id:78802 AJ534843 Stenotrophomonas sp. DW100 isolate DW100
2.28.3.8.5.39306 OTU 37 seqs
prokMSA_id:7803 AB021405 Pseudomonas hibiscicola ATCC 19867
prokMSA_id:7807 AJ131114 Stenotrophomonas maltophilia LMG 957
prokMSA_id:7808 AJ131115 Stenotrophomonas maltophilia LMG 10991
prokMSA_id:7810 AF068008 Stenotrophomonas maltophilia str. VUN 10 010
prokMSA_id:7811 AF068009 Stenotrophomonas maltophilia str. VUN 10 012
prokMSA_id:7816 AF098637 Stenotrophomonas maltophilia str. BL
prokMSA_id:7822 AJ131907 Stenotrophomonas maltophilia LMG 10989
prokMSA_id:7826 AB008509 Stenotrophomonas maltophilia ATCC 13637
prokMSA_id:16875 AY038629 clone GL178.1 
prokMSA_id:20575 AY038627 clone GL182.13 
prokMSA_id:22089 AF408331 Stenotrophomonas sp. clone KL-59-7-5 
prokMSA_id:23220 AJ293474 Stenotrophomonas maltophilia strain e-a22
prokMSA_id:36460 AY038628 clone GL178.11 
prokMSA_id:38863 AY038625 clone GL178.2 
prokMSA_id:38887 AF417866 Stenotrophomonas maltophilia 
prokMSA_id:39908 AY038624 clone GL184.10 
prokMSA_id:43218 AJ293467 Stenotrophomonas maltophilia strain c5
prokMSA_id:43546 AJ293468 Stenotrophomonas maltophilia strain c6
prokMSA_id:45132 AY038620 clone GL182.22 
prokMSA_id:45466 AY038621 clone GL184.24 
prokMSA_id:46966 AJ293472 Stenotrophomonas maltophilia strain e-a23
prokMSA_id:49109 AY038622 clone GL184.21 
prokMSA_id:50487 AJ293469 Stenotrophomonas maltophilia strain c20
prokMSA_id:52247 AJ293471 Stenotrophomonas maltophilia strain e-a1
prokMSA_id:53196 AY038623 clone GL184.31 
prokMSA_id:55295 AF529326 gamma clone CLi132 
prokMSA_id:59922 AY133070 gamma clone ccs2170 
prokMSA_id:61805 AF529355 gamma clone CLs90 
prokMSA_id:61818 AF529349 gamma clone CLs71 
prokMSA_id:62420 AF529094 gamma clone FTL204 
prokMSA_id:70857 AF100733 Stenotrophomonas maltophilia isolate VUN10003 
prokMSA_id:71314 AJ306833 Stenotrophomonas maltophilia isolate ON2
prokMSA_id:71585 AF100732 Stenotrophomonas maltophilia isolate VUN10002 
prokMSA_id:74268 AF214643 Nitrogen-fixing MAGDE3 
prokMSA_id:74521 AJ293473 Stenotrophomonas maltophilia strain e-p13
prokMSA_id:78291 AB074643 gamma clone:APe4_53
prokMSA_id:81159 AY169434 Stenotrophomonas maltophilia clone 15 
2.28.3.8.5.4015 OTU 1 seq
prokMSA_id:7835 AJ131915 Stenotrophomonas maltophilia LMG 10888
2.28.3.8.5.42290 OTU 3 seqs
prokMSA_id:7795 U62646 Stenotrophomonas africae str. MGB
prokMSA_id:7800 AF017749 Stenotrophomonas maltophilia str. N4-15
prokMSA_id:18889 AY038626 clone GL182.12 
2.28.3.8.5.6794 OTU 1 seq
prokMSA_id:50679 AY053488 AT425_EubD3 
2.28.3.8.6 XYL.FASTIDIOSA_SUBGROUP 38 seqs
2.28.3.8.6.32527 OTU 27 seqs
prokMSA_id:7844 AF159572 Xylella fastidiosa str. PCE-FG ATCC 35881
prokMSA_id:7845 AF159573 Xylella fastidiosa str. r116v11
prokMSA_id:7846 AF159574 Xylella fastidiosa str. PD28-5
prokMSA_id:7847 AF159575 Xylella fastidiosa str. CVC93-2
prokMSA_id:7848 AF159576 Xylella fastidiosa str. Mul-2
prokMSA_id:7850 AF159578 Xylella fastidiosa str. PWT-22 ATCC 35878
prokMSA_id:7851 AF159579 Xylella fastidiosa str. PLS2-9
prokMSA_id:7852 AF159580 Xylella fastidiosa str. PP4-5
prokMSA_id:7853 AF192343 str. PCE-FF ATCC 35879
prokMSA_id:19013 AF224734 Xylella fastidiosa 
prokMSA_id:19739 AF224736 Xylella fastidiosa isolate plant#5 CVC 
prokMSA_id:20550 AF203390 Xylella fastidiosa strain CO.01 
prokMSA_id:21170 AF203388 Xylella fastidiosa strain PL.788 
prokMSA_id:21608 AF203391 Xylella fastidiosa strain GR.8935 
prokMSA_id:25098 AF203392 Xylella fastidiosa strain PE.PLS 
prokMSA_id:27520 AF224735 Xylella fastidiosa strain ATCC 35874 
prokMSA_id:30732 AE003861 Xylella fastidiosa 9a5c section 7 of 229 of the complete gen
prokMSA_id:40772 AF224740 Xylella fastidiosa isolate MUL1 
prokMSA_id:50284 NC_002488 Xylella fastidiosa 9a5c complete genome
prokMSA_id:50520 AF203389 Xylella fastidiosa strain CI.52 
prokMSA_id:50654 AF224737 Xylella fastidiosa isolate Found 4 
prokMSA_id:51235 AE003870 Xylella fastidiosa 9a5c section 16 of 229 of the complete ge
prokMSA_id:51545 AF224738 Xylella fastidiosa strain ATCC 35873 
prokMSA_id:51876 AE003849 Xylella fastidiosa 9a5c complete genome
prokMSA_id:74745 AF224739 Xylella fastidiosa isolate Cafe 20 
prokMSA_id:79259 AE012553 Xylella fastidiosa Temecula1 section 1 of 9 of the complete 
prokMSA_id:79335 NC_004556 Xylella fastidiosa Temecula1 complete genome
2.28.3.8.6.39822 OTU 11 seqs
prokMSA_id:56224 AF536761 Xylella fastidiosa isolate PLM G83 
prokMSA_id:56414 AF536769 Xylella fastidiosa isolate P3 
prokMSA_id:59937 AF536770 Xylella fastidiosa isolate ALS-BC 
prokMSA_id:59938 AF536768 Xylella fastidiosa isolate CRS2 
prokMSA_id:59939 AF536767 Xylella fastidiosa isolate CM1 
prokMSA_id:59940 AF536766 Xylella fastidiosa isolate SL1 
prokMSA_id:59941 AF536765 Xylella fastidiosa isolate B14 
prokMSA_id:59942 AF536764 Xylella fastidiosa isolate ELM-1 
prokMSA_id:59943 AF536763 Xylella fastidiosa isolate MUL-3 
prokMSA_id:59944 AF536762 Xylella fastidiosa isolate RGW-R 
prokMSA_id:59945 AF536760 Xylella fastidiosa isolate Temecula 
2.28.3.8.7 XAN.CAMPESTRIS_SUBGROUP 40 seqs
2.28.3.8.7.10149 OTU 1 seq
prokMSA_id:73958 X84607 clone SBR2076
2.28.3.8.7.13316 OTU 1 seq
prokMSA_id:60576 AF407725 clone B63 
2.28.3.8.7.18239 OTU 1 seq
prokMSA_id:61900 AJ244722 Xanthomonas-like sp. V4.BO.41 
2.28.3.8.7.2063 OTU 1 seq
prokMSA_id:27216 AJ318169 gamma clone BIrii42
2.28.3.8.7.2566 OTU 1 seq
prokMSA_id:18867 X92132 sp. Lake Natron isolate 97NT4
2.28.3.8.7.2940 OTU 1 seq
prokMSA_id:64660 AF467297 Xanthomonas sp. clone burs_22 
2.28.3.8.7.30184 OTU 3 seqs
prokMSA_id:7873 U51103 str. BrG3
prokMSA_id:75052 AJ519985 Thermomonas fusca strain LMG 21736
prokMSA_id:77152 AJ519986 Thermomonas fusca strain LMG 21737T
2.28.3.8.7.33259 OTU 6 seqs
prokMSA_id:7875 AB008507 str. 12-3
prokMSA_id:22966 AF408332 beta clone KL-15-2-16 
prokMSA_id:41363 AF408333 beta clone KL-59-7-1 
prokMSA_id:41720 AF273082 Stenotrophomonas minatitlanensis 
prokMSA_id:62235 AY124375 Pseudoxanthomonas sp. UR374_02 
prokMSA_id:66929 AJ306770 clone SHA-39
2.28.3.8.7.34083 OTU 8 seqs
prokMSA_id:31789 AF479790 Pseudoxanthomonas taiwanensis strain CB-225 
prokMSA_id:48518 AB039336 Pseudoxanthomonas sp. M1-7 
prokMSA_id:48694 AB039330 Pseudoxanthomonas sp. M1-3 
prokMSA_id:70296 AF309808 synthetic wastewater tmbr11-28 complete 
prokMSA_id:70418 AF309818 synthetic wastewater tmbr15-4 complete 
prokMSA_id:70550 AF280866 mle1-45 
prokMSA_id:72795 AF427039 Pseudoxanthomonas taiwanensis 
prokMSA_id:73868 AF309810 synthetic wastewater tmbr11-3 complete 
2.28.3.8.7.37832 OTU 3 seqs
prokMSA_id:79280 AB101446 Xanthomonas axonopodis complete strain:S54
prokMSA_id:79389 AB101445 Xanthomonas axonopodis complete strain:S11
prokMSA_id:79476 AB101447 Xanthomonas axonopodis complete strain:S53
2.28.3.8.7.40595 OTU 4 seqs
prokMSA_id:7878 Y10756 Xanthomonas melonis LMG 8670
prokMSA_id:7879 X99299 Xanthomonas translucens LMG 876
prokMSA_id:7880 X99298 Xanthomonas campestris LMG 726
prokMSA_id:73182 AF290420 Xanthomonas campestris 
2.28.3.8.7.4085 OTU 1 seq
prokMSA_id:7859 AJ131912 Stenotrophomonas maltophilia LMG 11104
2.28.3.8.7.4140 OTU 1 seq
prokMSA_id:7877 AJ012231 Pseudoxanthomonas broegbernensis str. B1616/1
2.28.3.8.7.4181 OTU 1 seq
prokMSA_id:7884 AB008508 str. DY01
2.28.3.8.7.4182 OTU 1 seq
prokMSA_id:7885 AB021391 Pseudomonas boreopolis ATCC 33662
2.28.3.8.7.4186 OTU 1 seq
prokMSA_id:7889 Y10754 Xanthomonas hyacinthi LMG 739
2.28.3.8.7.4212 OTU 1 seq
prokMSA_id:7894 X95918 Xanthomonas albilineans LMG 494
2.28.3.8.7.42457 OTU 2 seqs
prokMSA_id:57805 AF548381 SG-3 complete 
prokMSA_id:59334 AF502234 clone HP1B89 
2.28.3.8.7.9455 OTU 1 seq
prokMSA_id:43798 AF260712 Stenotrophomonas sp. S8 
2.28.3.8.7.9723 OTU 1 seq
prokMSA_id:75145 AJ519662 gamma clone GuBH2-AG-107
2.28.3.8.99 VARIOUS 55 seqs
2.28.3.8.99.39612 OTU 55 seqs
prokMSA_id:7819 AJ131903 Stenotrophomonas maltophilia LMG 10879
prokMSA_id:7828 AF137357 Stenotrophomonas maltophilia str. VUN10075
prokMSA_id:7829 AJ131780 Stenotrophomonas maltophilia LMG 10851
prokMSA_id:7856 Y10764 Xanthomonas bromi LMG 947
prokMSA_id:7857 Y10761 Xanthomonas vesicatoria LMG 911
prokMSA_id:7858 X95921 Xanthomonas oryzae LMG 5047
prokMSA_id:7861 X95922 Xanthomonas populi LMG 5743
prokMSA_id:7866 Y10758 Xanthomonas pisi LMG 847
prokMSA_id:7869 X95920 Xanthomonas fragariae LMG 708
prokMSA_id:7871 X95919 Xanthomonas axonopodis LMG 538
prokMSA_id:7872 X95917 Xanthomonas campestris LMG 568
prokMSA_id:7874 AF188831 Xanthomonas campestris pv. campestris 
prokMSA_id:7876 AF000946 Xanthomonas campestris str. Xc17
prokMSA_id:7883 Y10765 Xanthomonas codiaei LMG 8678
prokMSA_id:7887 Y10757 Xanthomonas arboricola LMG 747
prokMSA_id:7888 Y10760 Xanthomonas cucurbitae str. LMG
prokMSA_id:7890 Y10762 Xanthomonas cassavae LMG 673
prokMSA_id:7891 Y10763 Xanthomonas theicola LMG 8684
prokMSA_id:7892 Y10759 Xanthomonas hortorum LMG 733
prokMSA_id:7896 Y10755 Xanthomonas vasicola LMG 736
prokMSA_id:7897 AF159581 Xanthomonas campestris str. L2
prokMSA_id:7898 AB021399 Pseudomonas cissicola ATCC 33616
prokMSA_id:7899 AJ131117 Stenotrophomonas maltophilia LMG 10857
prokMSA_id:7900 AJ011332 Stenotrophomonas maltophilia str. HK40
prokMSA_id:7901 X99297 Xanthomonas campestris LMG 682
prokMSA_id:16822 AF208315 Xanthomonas cynarae 
prokMSA_id:18200 AJ295673 Stenotrophomonas maltophilia clone IrT-JG14-12
prokMSA_id:18402 AF100734 Stenotrophomonas maltophilia isolate VUN10075 
prokMSA_id:29468 AF335549 Xanthomonas sp. 36A 
prokMSA_id:34396 AF100735 Stenotrophomonas maltophilia isolate VUN10035 
prokMSA_id:34542 AJ293463 Stenotrophomonas maltophilia strain e-p10
prokMSA_id:38820 AJ293461 Stenotrophomonas maltophilia strain e-p14
prokMSA_id:45548 AJ293465 Stenotrophomonas maltophilia strain e-p19
prokMSA_id:47527 AJ295672 Stenotrophomonas maltophilia clone IrT-JG14-28
prokMSA_id:52297 AJ293462 Stenotrophomonas maltophilia strain e-p17
prokMSA_id:55391 AE012505 Xanthomonas campestris pv. campestris str. ATCC 33913 sectio
prokMSA_id:57539 AJ516049 Stenotrophomonas maltophilia strain LE/61
prokMSA_id:59558 AY135649 Xanthomonas axonopodis pv. allii 
prokMSA_id:60353 AF534190 clone Caf5 
prokMSA_id:60387 AF513452 Xanthomonas group LA37 
prokMSA_id:61947 AJ244720 Stentrophomonas-like sp. V4.BP.15 
prokMSA_id:64287 AY040357 Stenotrophomonas maltophilia strain LMG 20578 
prokMSA_id:64373 NC_003919 Xanthomonas axonopodis pv. citri str. 306 complete genome
prokMSA_id:65525 NC_003902 Xanthomonas campestris pv. campestris str. ATCC 33913 comple
prokMSA_id:66133 AE012082 Xanthomonas axonopodis pv. citri str. 306 section 460 of 469
prokMSA_id:66134 AE012039 Xanthomonas axonopodis pv. citri str. 306 section 417 of 469
prokMSA_id:66211 AE012540 Xanthomonas campestris pv. campestris str. ATCC 33913 sectio
prokMSA_id:68651 AY081993 clone KRA30-39 
prokMSA_id:68652 AY081992 clone KRA30-21 
prokMSA_id:68800 AF442743 Xanthomonas axonopodis pv. citri strain MA ; intergenic spac
prokMSA_id:68801 AF442744 Xanthomonas axonopodis pv. citri strain Lw ; intergenic spac
prokMSA_id:68803 AF442740 Xanthomonas axonopodis pv. aurantifolii strain X341 ; interg
prokMSA_id:68804 AF442739 Xanthomonas axonopodis pv. aurantifolii strain X84 ; interge
prokMSA_id:74547 AJ243605 Stenotrophomonas sp
prokMSA_id:82333 AY169417 Stenotrophomonas maltophilia clone 1-24 
2.28.3.9 LEGIONELLA_GROUP 109 seqs
2.28.3.9.1 LEGIONELLA_SUBGROUP 86 seqs
2.28.3.9.1.1 FLU.DUMOFFII_SUBGROUP 3 seqs
2.28.3.9.1.1.4816 OTU 1 seq
prokMSA_id:7906 X73405 Fluoribacter dumoffii str. NY-23 ATCC 33279
2.28.3.9.1.1.4820 OTU 1 seq
prokMSA_id:7908 X97361 Legionella sp. str. LLAP8
2.28.3.9.1.1.4818 OTU 1 seq
prokMSA_id:7907 Z32637 Fluoribacter dumoffii NCTC 11370
2.28.3.9.1.2 LEG.WADSWORTHII_SUBGROUP 4 seqs
2.28.3.9.1.2.3314 OTU 1 seq
prokMSA_id:80375 AF468229 clone ARKCH2Br2-23 
2.28.3.9.1.2.4837 OTU 1 seq
prokMSA_id:7911 Z32639 Fluoribacter gormanii NCTC 11401
2.28.3.9.1.2.4838 OTU 1 seq
prokMSA_id:7912 Z49738 Legionella wadsworthii NCTC 11532
2.28.3.9.1.2.4843 OTU 1 seq
prokMSA_id:7915 Z49720 Legionella cherrii
2.28.3.9.1.3 LEG.PARISIENSIS_SUBGROUP 2 seqs
2.28.3.9.1.3.4844 OTU 1 seq
prokMSA_id:7916 Z49731 Legionella parisiensis NCTC 11983
2.28.3.9.1.3.4845 OTU 1 seq
prokMSA_id:7917 U59697 Legionella parisiensis str. Lyon96010011; FLP2 ATCC 700174
2.28.3.9.1.4 LEG.ANISA_SUBGROUP 2 seqs
2.28.3.9.1.4.4847 OTU 1 seq
prokMSA_id:7918 Z32635 Legionella anisa NCTC 11974
2.28.3.9.1.4.4874 OTU 1 seq
prokMSA_id:7920 AF057017 Legionella FM-1-679 str. FM-1-679
2.28.3.9.1.5 FLU.BOZEMANAE_SUBGROUP 2 seqs
2.28.3.9.1.5.31258 OTU 2 seqs
prokMSA_id:7922 Z49719 Fluoribacter bozemanae str. Mi-15 sgp1 NCTC 11369
prokMSA_id:7924 Z49718 Fluoribacter bozemanae str. spg2 NCTC 11975
2.28.3.9.1.6 LEG.CINCINNATIENSIS_SUBGROUP 5 seqs
2.28.3.9.1.6.13909 OTU 1 seq
prokMSA_id:60646 AF406526 gamma clone AEGEAN_234 
2.28.3.9.1.6.4882 OTU 1 seq
prokMSA_id:7927 Z49734 Legionella sainthelensi NCTC 11988
2.28.3.9.1.6.4886 OTU 1 seq
prokMSA_id:7929 Z49725 Legionella gratiana NCTC 12788
2.28.3.9.1.6.4909 OTU 1 seq
prokMSA_id:7932 Z49721 Legionella cincinnatiensis NCTC 12438
2.28.3.9.1.6.4907 OTU 1 seq
prokMSA_id:7931 Z49735 Legionella santicrucis NCTC 11999
2.28.3.9.1.7 LEG.LYTICA_SUBGROUP 20 seqs
2.28.3.9.1.7.11397 OTU 1 seq
prokMSA_id:21751 AY050582 clone GOUTA10 
2.28.3.9.1.7.2941 OTU 1 seq
prokMSA_id:64661 AF467296 Xanthomonas sp. clone 88_5_2 
2.28.3.9.1.7.32766 OTU 4 seqs
prokMSA_id:7939 X97366 Legionella sp. str. LLAP12
prokMSA_id:7947 X97362 Legionella sp. str. LLAP11
prokMSA_id:7949 X97357 Legionella sp. str. LLAP4
prokMSA_id:66336 X97366 Legionella sp. strain LLAP12
2.28.3.9.1.7.33191 OTU 10 seqs
prokMSA_id:7937 Z49741 Legionella lytica str. LLAP-3 PCM 2298
prokMSA_id:7938 X66835 Legionella lytica str. LLAP-3 PCM 2298
prokMSA_id:7940 X97364 Legionella lytica str. LLAP-3 PCM 2298
prokMSA_id:7942 U44910 unnamed organism
prokMSA_id:7945 X97358 Legionella lyticum str. LLAP3
prokMSA_id:7948 X97356 Legionella sp. str. LLAP2
prokMSA_id:7950 X97359 Legionella sp. str. LLAP6
prokMSA_id:7951 X97365 Legionella sp. str. LLAP7
prokMSA_id:7952 X97360 Legionella sp. str. LLAP9
prokMSA_id:7953 X60080 Legionella sp. str. LLAP-3
2.28.3.9.1.7.4917 OTU 1 seq
prokMSA_id:7935 Z49737 Legionella steigerwaltii NCTC 11991
2.28.3.9.1.7.4946 OTU 1 seq
prokMSA_id:7941 U44909 unnamed organism
2.28.3.9.1.7.4952 OTU 1 seq
prokMSA_id:7946 X97363 Legionella sp. str. LLAP10
2.28.3.9.1.7.7964 OTU 1 seq
prokMSA_id:52016 AY050590 clone GOUTB2 
2.28.3.9.1.8 LEG.SHAKESPEAREI_SUBGROUP 5 seqs
2.28.3.9.1.8.4984 OTU 1 seq
prokMSA_id:7954 Z49729 Legionella moravica NCTC 12239
2.28.3.9.1.8.4986 OTU 1 seq
prokMSA_id:7955 Z49739 Legionella worsleiensis NCTC 13277
2.28.3.9.1.8.4990 OTU 1 seq
prokMSA_id:7957 U66104 str. LLAP-14
2.28.3.9.1.8.4988 OTU 1 seq
prokMSA_id:7956 Z49736 Legionella shakespearei NCTC 12829
2.28.3.9.1.8.4992 OTU 1 seq
prokMSA_id:7958 Z49732 Legionella quateirensis NCTC 12370
2.28.3.9.1.9 LEG.PNEUMOPHILA_SUBGROUP 7 seqs
2.28.3.9.1.9.35443 OTU 4 seqs
prokMSA_id:7960 X73402 Legionella pneumophila subsp. pneumophila str. Chicago 2 ATC
prokMSA_id:7962 AF122885 Legionella pneumophila subsp. pascullei str. U8W ATCC 33737
prokMSA_id:51847 AF129524 Legionella pneumophila strain E5C1 
prokMSA_id:62834 AJ496383 Legionella pneumophila serogroup 6 avirulent mutant
2.28.3.9.1.9.5012 OTU 1 seq
prokMSA_id:7963 AF122886 Legionella waltersii str. 2074-AUS-E ATCC 51914
2.28.3.9.1.9.5009 OTU 1 seq
prokMSA_id:7961 AF122883 Legionella gresilensis str. Greoux 11 D13 ATCC 700509
2.28.3.9.1.9.9569 OTU 1 seq
prokMSA_id:58869 AF424887 Legionella busanensis strain K9970 
2.28.3.9.1.11 LEG.ISRAELENSIS_SUBGROUP 11 seqs
2.28.3.9.1.11.5039 OTU 1 seq
prokMSA_id:7974 Z49717 Legionella birminghamensis NCTC 12437
2.28.3.9.1.11.5041 OTU 1 seq
prokMSA_id:7976 Z49733 Legionella quinlivanii NCTC 12433
2.28.3.9.1.11.5038 OTU 1 seq
prokMSA_id:7973 Z49727 Legionella lansingensis NCTC 12830
2.28.3.9.1.11.5037 OTU 1 seq
prokMSA_id:7972 Z49722 Legionella fairfieldensis NCTC 12488
2.28.3.9.1.11.5042 OTU 1 seq
prokMSA_id:7977 Z49723 Legionella geestiana NCTC 12373
2.28.3.9.1.11.5043 OTU 1 seq
prokMSA_id:7978 Z49716 Legionella adelaidensis NCTC 12735
2.28.3.9.1.11.5070 OTU 1 seq
prokMSA_id:7980 X73397 Legionella oakridgensis ATCC 33761
2.28.3.9.1.11.5072 OTU 1 seq
prokMSA_id:7981 Z32642 Legionella oakridgensis NCTC 11531
2.28.3.9.1.11.5074 OTU 1 seq
prokMSA_id:7982 Z49730 Legionella nautarum NCTC 12375
2.28.3.9.1.11.5075 OTU 1 seq
prokMSA_id:7983 X73408 Legionella israelensis ATCC 43119
2.28.3.9.1.11.5077 OTU 1 seq
prokMSA_id:7984 Z32640 Legionella israelensis NCTC 12010
2.28.3.9.1.13 TAT.MICDADEI_SUBGROUP 9 seqs
2.28.3.9.1.13.20553 OTU 1 seq
prokMSA_id:78512 AJ536872 gamma clone JG30a-KF-94
2.28.3.9.1.13.21556 OTU 1 seq
prokMSA_id:47939 AJ240918 gamma CHAB-XI-27 5' 
2.28.3.9.1.13.31894 OTU 3 seqs
prokMSA_id:7991 Z32641 Tatlockia maceachernii str. PX-1-G2-E2 NCTC 11982
prokMSA_id:7993 X60081 Tatlockia maceachernii str. PX-1-G2-E2 NCTC 11982
prokMSA_id:48785 AF227161 Legionella maceachernii 
2.28.3.9.1.13.35379 OTU 2 seqs
prokMSA_id:7997 X73395 Legionella feeleii str. WO-44C ATCC 35072
prokMSA_id:7998 X73406 Legionella feeleii str. 691-WI-H ATCC 35849
2.28.3.9.1.13.5111 OTU 1 seq
prokMSA_id:7994 Z49724 Legionella donaldsonii
2.28.3.9.1.13.5113 OTU 1 seq
prokMSA_id:7996 X97355 Legionella sp. str. LLAP1
2.28.3.9.1.14 LEG.ERYTHRA_SUBGROUP 3 seqs
2.28.3.9.1.14.42917 OTU 2 seqs
prokMSA_id:8001 Z32643 Legionella rubrilucens NCTC 11987
prokMSA_id:8004 Z32638 Legionella erythra str. SE-32A-C8 ATCC 35303
2.28.3.9.1.14.706 OTU 1 seq
prokMSA_id:8002 X73398 Legionella rubrilucens ATCC 35304
2.28.3.9.1.15 LEG.BRUNENSIS_SUBGROUP 2 seqs
2.28.3.9.1.15.712 OTU 1 seq
prokMSA_id:8007 X73403 Legionella brunensis
2.28.3.9.1.15.714 OTU 1 seq
prokMSA_id:8008 AF122884 Legionella beliardensis str. Montbeliard A1
2.28.3.9.1.16 LEG.JAMESTOWNIENSIS_SUBGROUP 3 seqs
2.28.3.9.1.16.732 OTU 1 seq
prokMSA_id:8010 X73409 Legionella jamestowniensis ATCC 35298
2.28.3.9.1.16.734 OTU 1 seq
prokMSA_id:8011 AB013257 str. NKB5
2.28.3.9.1.16.736 OTU 1 seq
prokMSA_id:8012 Z49726 Legionella jamestowniensis NCTC 11981
2.28.3.9.1.17 LEG.JORDANIS_SUBGROUP 2 seqs
2.28.3.9.1.17.738 OTU 1 seq
prokMSA_id:8013 Z32667 Legionella jordanis NCTC 11533
2.28.3.9.1.17.739 OTU 1 seq
prokMSA_id:8014 X73396 Legionella jordanis ATCC 33623
2.28.3.9.1.99 VARIOUS 6 seqs
2.28.3.9.1.99.42692 OTU 6 seqs
prokMSA_id:7913 X73401 Legionella wadsworthii ATCC 33877
prokMSA_id:7914 X73404 Legionella cherrii ATCC 35252
prokMSA_id:7921 X73394 Legionella anisa ATCC 35292
prokMSA_id:7928 X73399 Legionella sainthelensi ATCC 35248
prokMSA_id:7933 X73407 Legionella cincinnatiensis ATCC 43753
prokMSA_id:7934 X73400 Legionella steigerwaltii ATCC 35302
2.28.3.9.2 COX.BURNETII_SUBGROUP 23 seqs
2.28.3.9.2.14026 OTU 1 seq
prokMSA_id:46260 AB001521 Ornithodoros moubata symbiote A 
2.28.3.9.2.14845 OTU 1 seq
prokMSA_id:45765 AF418944 clone HTA4 
2.28.3.9.2.15022 OTU 1 seq
prokMSA_id:47013 AJ318123 gamma clone BIfciii1
2.28.3.9.2.15323 OTU 1 seq
prokMSA_id:16391 AF383621 Rickettsiella sp. GSU 
2.28.3.9.2.19697 OTU 1 seq
prokMSA_id:79079 AJ536861 gamma clone JG30-KF-C15
2.28.3.9.2.34557 OTU 10 seqs
prokMSA_id:19290 AB058911 Legionella sp. IUB43 
prokMSA_id:19657 AB058909 Legionella sp. IA55 
prokMSA_id:22506 AB058916 Legionella sp. OA32 
prokMSA_id:24832 AB058915 Legionella sp. OUA34 
prokMSA_id:33240 AB058908 Legionella sp. IUA36 
prokMSA_id:41926 AB058917 Legionella sp. OI36 
prokMSA_id:45382 AB058907 Legionella sp. IY2 
prokMSA_id:49165 AB058910 Legionella sp. II29 
prokMSA_id:49724 AB058914 Legionella sp. OY6 
prokMSA_id:51890 AB058918 Legionella sp. OUB41 
2.28.3.9.2.6659 OTU 1 seq
prokMSA_id:73506 AF286124 from Cecidotrioza sozanica 
2.28.3.9.2.741 OTU 1 seq
prokMSA_id:8016 AB001519 unnamed organism
2.28.3.9.2.742 OTU 1 seq
prokMSA_id:8017 D84559 Coxiella sp
2.28.3.9.2.744 OTU 1 seq
prokMSA_id:8018 D89795 Coxiella burnetii str. 58T
2.28.3.9.2.7508 OTU 1 seq
prokMSA_id:50747 AF327558 Endosymbiont of Folsomia candida 
2.28.3.9.2.765 OTU 1 seq
prokMSA_id:8026 AB015255 str. JTB256
2.28.3.9.2.767 OTU 1 seq
prokMSA_id:8028 U97547 Rickettsiella grylli
2.28.3.9.2.9797 OTU 1 seq
prokMSA_id:74504 AF235121 gamma KTc0924 
2.28.3.10 METHYLOMONAS_GROUP 68 seqs
2.28.3.10.1 ENDOSYMBIONT_OF_HELIOTHIS 1 seq
2.28.3.10.1.784 OTU 1 seq
prokMSA_id:8030 L22481 endosymbiont of Heliothis virescens testis
2.28.3.10.3 MLC.CAPSULATUS_SUBGROUP 18 seqs
2.28.3.10.3.12646 OTU 1 seq
prokMSA_id:21930 AF351230 gamma clone 4-25 
2.28.3.10.3.20505 OTU 1 seq
prokMSA_id:55626 AF526927 clone T5-3 rrn 
2.28.3.10.3.2553 OTU 1 seq
prokMSA_id:80228 AY193138 clone Bol92 
2.28.3.10.3.26771 OTU 2 seqs
prokMSA_id:8046 U89297 Methylocaldum tepidum str. LK6
prokMSA_id:72929 U89297 Methylocaldum tepidum complete 
2.28.3.10.3.28634 OTU 2 seqs
prokMSA_id:71299 AF215632 Methylocaldum sp. dr65 complete 
prokMSA_id:73918 AF215633 Methylocaldum sp. r6f complete 
2.28.3.10.3.33358 OTU 2 seqs
prokMSA_id:8036 X72771 Methylococcus capsulatus str. Bath ACM 3302
prokMSA_id:8037 X72770 Methylococcus capsulatus str. Texas ACM 1292
2.28.3.10.3.42681 OTU 4 seqs
prokMSA_id:56539 AF361094 clone SBRQ152 
prokMSA_id:58384 AF361093 clone SBRQ196 
prokMSA_id:58386 AF361090 clone SBRQ185 
prokMSA_id:58387 AF361089 clone SBRQ171 
2.28.3.10.3.5611 OTU 1 seq
prokMSA_id:57791 AY098909 clone SBRL2_19 
2.28.3.10.3.6314 OTU 1 seq
prokMSA_id:57801 AY098900 clone SBRL2_40 
2.28.3.10.3.773 OTU 1 seq
prokMSA_id:56552 AF361092 clone SBRQ157 
2.28.3.10.3.787 OTU 1 seq
prokMSA_id:8035 X73819 Methylococcus thermophilus str. IMV-B-3037
2.28.3.10.3.811 OTU 1 seq
prokMSA_id:8045 U89300 Methylocaldum szegediense str. OR2
2.28.3.10.4 MLM.METHANICA_SUBGROUP 44 seqs
2.28.3.10.4.11346 OTU 1 seq
prokMSA_id:45263 AF304196 Methylomonas methanica S1 complete 
2.28.3.10.4.16595 OTU 1 seq
prokMSA_id:40043 AF304195 Methylobacter luteus NCIMB 11914 complete 
2.28.3.10.4.18478 OTU 1 seq
prokMSA_id:77645 AJ535246 gamma clone Hyd89-87
2.28.3.10.4.18953 OTU 1 seq
prokMSA_id:56096 AY094499 gamma clone 1-27 
2.28.3.10.4.19134 OTU 1 seq
prokMSA_id:77724 AJ535221 gamma clone Hyd24-01
2.28.3.10.4.20775 OTU 1 seq
prokMSA_id:48494 AF351235 gamma clone 8-4 
2.28.3.10.4.21075 OTU 1 seq
prokMSA_id:70707 AJ132384 strain AMO 1
2.28.3.10.4.2125 OTU 1 seq
prokMSA_id:64552 AY102612 Caedibacter taeniospiralis 
2.28.3.10.4.23423 OTU 2 seqs
prokMSA_id:8084 X72776 Methylomonas aurantiaca str. JB103 phenon3 ACM 3406
prokMSA_id:8090 X72778 Methylomonas fodinarum str. JB13 phenon2 ACM 3268
2.28.3.10.4.24068 OTU 2 seqs
prokMSA_id:8096 AF016981 Methylobacter BB5.1
prokMSA_id:37065 AF304197 Methylobacter marinus A45 complete 
2.28.3.10.4.29940 OTU 2 seqs
prokMSA_id:22040 AY007295 Methylobacter sp. LW12 
prokMSA_id:40125 AY007296 Methylobacter sp. LW14 
2.28.3.10.4.32375 OTU 2 seqs
prokMSA_id:8051 AF177296 str. AML-C10
prokMSA_id:8052 AF177297 str. AML-D4
2.28.3.10.4.32430 OTU 2 seqs
prokMSA_id:8050 X72777 Methylomicrobium album str. VKM-BG8 ACM 3314
prokMSA_id:8081 X72767 Methylomicrobium agile str. A30 ACM 3308
2.28.3.10.4.3282 OTU 1 seq
prokMSA_id:42401 AJ290055 FukuN13 
2.28.3.10.4.33248 OTU 4 seqs
prokMSA_id:8058 L35540 Methylomicrobium pelagicum
prokMSA_id:8060 AF096091 Methylomicrobium alcaliphilum str. 5z
prokMSA_id:8063 D89279 Methylomicrobium NI str. NI
prokMSA_id:8080 U05570 Methylomicrobium pelagicum
2.28.3.10.4.33261 OTU 4 seqs
prokMSA_id:8061 AF096092 Methylomicrobium buryaticum str. 5G
prokMSA_id:8062 AF096093 Methylomicrobium buryaticum str. 7G
prokMSA_id:25325 AF194539 Methylomicrobium sp. 4G 
prokMSA_id:39461 AF307138 Methylomicrobium sp. 5B complete 
2.28.3.10.4.35312 OTU 5 seqs
prokMSA_id:8097 AF131868 Methylobacter T20 str. T20
prokMSA_id:8098 AF152597 Methylobacter psychrophilus str. Z-0021
prokMSA_id:31630 AF358020 clone LO13.6 
prokMSA_id:41292 AF351239 gamma clone 8-65 
prokMSA_id:43109 AJ414655 Methylobacter sp. SV96 strain SV96
2.28.3.10.4.37588 OTU 2 seqs
prokMSA_id:8086 X72772 Methylobacter luteus ACM 3304
prokMSA_id:8091 X72773 Methylobacter whittenburyi ACM 3309
2.28.3.10.4.3871 OTU 1 seq
prokMSA_id:81028 AF453550 gamma clone ML513M-26 
2.28.3.10.4.42945 OTU 6 seqs
prokMSA_id:8067 AF150800 Methylomonas LW21 str. LW21
prokMSA_id:8068 AF150798 Methylomonas LW19 str. LW19
prokMSA_id:8069 AF150796 Methylomonas LW16 str. LW16
prokMSA_id:8070 AF150794 Methylomonas LW15 str. LW15
prokMSA_id:8071 AF150792 Methylomonas LW13 str. LW13
prokMSA_id:8078 AB015603 Methylomonas sp. str. KSPIII
2.28.3.10.4.836 OTU 1 seq
prokMSA_id:8059 X72775 Methylomicrobium pelagicum ACM 3505
2.28.3.10.4.865 OTU 1 seq
prokMSA_id:8066 AF150806 Methylomonas methanica
2.28.3.10.4.928 OTU 1 seq
prokMSA_id:8089 AF154089 clone BPC036
2.28.3.10.5 MBC.LUTEUS_SUBGROUP 5 seqs
2.28.3.10.5.14086 OTU 1 seq
prokMSA_id:22752 AB056868 Bathymodiolus sp. symbiont I 
2.28.3.10.5.1447 OTU 1 seq
prokMSA_id:8100 U05595 symbiont of methanotrophic symbiont of Louisiana Slope musse
2.28.3.10.5.15705 OTU 1 seq
prokMSA_id:16413 AB036710 Bathymodiolus platifrons methanotrophic gill symbiont 
2.28.3.10.5.4985 OTU 1 seq
prokMSA_id:50455 AB036711 Bathymodiolus japonicus methanotrophic gill symbiont 
2.28.3.10.5.964 OTU 1 seq
prokMSA_id:8099 U29164 symbiont of mussel methanotrophic gill
2.28.3.11 OCEANOSPIRILLUM_GROUP 210 seqs
2.28.3.11.1 HALOMONAS_SUBGROUP 167 seqs
2.28.3.11.1.1 OSP.JAPONICUM_SUBGROUP 1 seq
2.28.3.11.1.1.1454 OTU 1 seq
prokMSA_id:8109 AB006766 Oceanospirillum japonicum ATCC 19191
2.28.3.11.1.2 MRS.MINUTULUM_SUBGROUP 5 seqs
2.28.3.11.1.2.18142 OTU 1 seq
prokMSA_id:33068 AF275713 Hailaer soda lake Z4 
2.28.3.11.1.2.29568 OTU 3 seqs
prokMSA_id:75532 AB098510 Marinospirillum insularis strain:K
prokMSA_id:76474 AB098512 Marinospirillum insularis strain:O5
prokMSA_id:77112 AB098511 Marinospirillum insularis strain:P2
2.28.3.11.1.2.8932 OTU 1 seq
prokMSA_id:75039 AB098513 Marinospirillum insularis strain:NB11
2.28.3.11.1.3 ZYB.PALMAE_SUBGROUP 34 seqs
2.28.3.11.1.3.12030 OTU 1 seq
prokMSA_id:51913 AF286123 Primary endosymbiont of Aleurodicus dugesii 
2.28.3.11.1.3.1476 OTU 1 seq
prokMSA_id:8115 Y13299 Carnomonas nigrifaciens str. CTCBS1
2.28.3.11.1.3.14752 OTU 1 seq
prokMSA_id:69260 AF211148 Carsonella ruddii natural-host Russelliana intermedia 23S an
2.28.3.11.1.3.1475 OTU 1 seq
prokMSA_id:8114 D14555 Zymobacter palmae str. T109 IAM 14233
2.28.3.11.1.3.1478 OTU 1 seq
prokMSA_id:8117 AF077604 unnamed organism
2.28.3.11.1.3.1481 OTU 1 seq
prokMSA_id:8118 AF077605 unnamed organism
2.28.3.11.1.3.1484 OTU 1 seq
prokMSA_id:8119 AF077606 unnamed organism
2.28.3.11.1.3.1501 OTU 1 seq
prokMSA_id:8120 AB013086 unnamed organism
2.28.3.11.1.3.1504 OTU 1 seq
prokMSA_id:8122 Z11927 symbiont of Siphoninus phillyreae ash whitefly
2.28.3.11.1.3.15623 OTU 1 seq
prokMSA_id:54310 AF211130 Carsonella ruddii natural-host Cacopsylla peregrina 23S and 
2.28.3.11.1.3.16318 OTU 1 seq
prokMSA_id:54499 AF280097 Carsonella ruddii and 23S genes 
2.28.3.11.1.3.16547 OTU 1 seq
prokMSA_id:68910 AF211132 Carsonella ruddii natural-host Calophya schini tryptophanyl-
2.28.3.11.1.3.17008 OTU 1 seq
prokMSA_id:54580 AF211146 Carsonella ruddii natural-host Psylla buxi 23S and genes 
2.28.3.11.1.3.17428 OTU 1 seq
prokMSA_id:25150 AF400482 Primary endosymbiont of Trialeurodes abutilonea 
2.28.3.11.1.3.17746 OTU 1 seq
prokMSA_id:54683 AF211149 Carsonella ruddii natural-host Spanioneura fonscolombii 23S 
2.28.3.11.1.3.17965 OTU 1 seq
prokMSA_id:46892 AF400467 Primary endosymbiont of Bemisia tabaci clone UG26 
2.28.3.11.1.3.18592 OTU 1 seq
prokMSA_id:39721 AF400468 Primary endosymbiont of Bemisia tabaci clone UG39 
2.28.3.11.1.3.18928 OTU 1 seq
prokMSA_id:25332 AF286126 Secondary endosymbiont of Heteropsylla cubana 
2.28.3.11.1.3.20503 OTU 1 seq
prokMSA_id:55625 AF211871 Zymobacter palmae ; tRNA-Ile and tRNA-Ala genes complete ; a
2.28.3.11.1.3.31078 OTU 2 seqs
prokMSA_id:46529 AB038367 Mycetocyte endosymbiont of Diaphorina citri 
prokMSA_id:54539 AF211136 Carsonella ruddii natural-host Diaphorina citri 23S and gene
2.28.3.11.1.3.32352 OTU 2 seqs
prokMSA_id:54585 AF211123 Carsonella ruddii country Chile 23S and genes 
prokMSA_id:68912 AF211124 Carsonella ruddii country USA tryptophanyl-tRNA synthetase t
2.28.3.11.1.3.34356 OTU 9 seqs
prokMSA_id:19222 AF400462 Primary endosymbiont of Bemisia tabaci clone MEX4 
prokMSA_id:20005 AF400461 Primary endosymbiont of Bemisia tabaci clone MEX12 
prokMSA_id:28101 AF400451 Primary endosymbiont of Bemisia tabaci clone AZA 
prokMSA_id:34503 AF400450 Primary endosymbiont of Bemisia tabaci clone AUS 
prokMSA_id:36328 AF400466 Primary endosymbiont of Bemisia tabaci clone UG23 
prokMSA_id:42418 AF400454 Primary endosymbiont of Bemisia tabaci clone CAMW15 
prokMSA_id:43103 AF400464 Primary endosymbiont of Bemisia tabaci clone TANZ18 
prokMSA_id:43537 AF400465 Primary endosymbiont of Bemisia tabaci clone TANZ3 
prokMSA_id:49640 AF400457 Primary endosymbiont of Bemisia tabaci clone IND34 
2.28.3.11.1.3.42848 OTU 2 seqs
prokMSA_id:27044 AF286117 Primary endosymbiont of Psylla ?floccosa 
prokMSA_id:53049 AF211147 Carsonella ruddii natural-host Psylla sp. 23S and genes 
2.28.3.11.1.5 CH.MARISMORTUI_SUBGROUP 16 seqs
2.28.3.11.1.5.33026 OTU 4 seqs
prokMSA_id:33515 AJ276807 Halomonas muralis strain LMG-19418
prokMSA_id:36749 AJ320531 Halomonas muralis specimen voucher LMG 20970
prokMSA_id:42533 AJ320532 Halomonas muralis specimen voucher LMG 20971
prokMSA_id:70784 T AJ320530 Halomonas muralis strain LMG 20969
2.28.3.11.1.5.42695 OTU 9 seqs
prokMSA_id:8127 X87221 Chromohalobacter marismortui str. A-100
prokMSA_id:8128 X87222 Chromohalobacter marismortui str. A-492
prokMSA_id:8129 U78719 Chromohalobacter marismortui str. T1093
prokMSA_id:8130 X87220 Chromohalobacter marismortui str. A-65
prokMSA_id:35612 AJ295147 Halomonas elongata strain ATCC 33174
prokMSA_id:37191 T AJ295144 Chromohalobacter israelensis strain ATCC 43985
prokMSA_id:43545 AF211862 Chromohalobacter israelensis 
prokMSA_id:48786 AJ295146 Halomonas elongata strain DSM 3043
prokMSA_id:52988 AB042503 Halophilic TAG C11 
2.28.3.11.1.5.42694 OTU 3 seqs
prokMSA_id:8126 AB021386 Pseudomonas beijerinckii ATCC 19372
prokMSA_id:43878 AF211861 Chromohalobacter canadensis 
prokMSA_id:46277 T AJ295143 Chromohalobacter canadensis strain ATCC 43984
2.28.3.11.1.6 HLM.DESIDERATA_SUBGROUP 19 seqs
2.28.3.11.1.6.11869 OTU 1 seq
prokMSA_id:60375 AF513464 Halomonadaceae PH17 
2.28.3.11.1.6.12515 OTU 1 seq
prokMSA_id:46054 E15669 Deleya sp. ASE1315 
2.28.3.11.1.6.1519 OTU 1 seq
prokMSA_id:26569 AJ302088 Halomonas sp. IB-I6 strain IB-I6
2.28.3.11.1.6.1527 OTU 1 seq
prokMSA_id:8131 X92417 Halomonas desiderata str. FB2 DSM 9502
2.28.3.11.1.6.1534 OTU 1 seq
prokMSA_id:8136 X93493 Halomonas pantelleriensis str. AAP DSM 9661
2.28.3.11.1.6.15330 OTU 1 seq
prokMSA_id:38608 AF251143 Halomonas marisflava 
2.28.3.11.1.6.1532 OTU 1 seq
prokMSA_id:8134 AF140007 Halomonas ML-185 str. ML-185
2.28.3.11.1.6.1531 OTU 1 seq
prokMSA_id:8133 AF054286 Halomonas campusalis
2.28.3.11.1.6.2688 OTU 1 seq
prokMSA_id:42325 AJ427626 Chromohalobacter salinarum strain CG 4.1
2.28.3.11.1.6.34841 OTU 3 seqs
prokMSA_id:8132 AB025599 Halomonas MBIC2031 str. MBIC2031
prokMSA_id:8135 U78786 Haererehalobacter ostenderis
prokMSA_id:69979 AB055789 Pseudomonas sp. Fsur-1 
2.28.3.11.1.6.4062 OTU 1 seq
prokMSA_id:80433 AY188938 Marine P_wp0224 
2.28.3.11.1.6.41258 OTU 3 seqs
prokMSA_id:42178 AF275699 Hailaer soda lake F16 
prokMSA_id:49544 X92143 sp. Lake Elmenteita isolate 44E3
prokMSA_id:52591 AJ309564 Halomonas nitritophilus strain IB-Ar4
2.28.3.11.1.6.42552 OTU 3 seqs
prokMSA_id:22591 X92146 sp. Crater Lake isolate 75C4
prokMSA_id:42889 X92144 sp. Lake Nakuru isolate 28N1
prokMSA_id:44380 X92147 sp. Lake Elmenteita isolate 35E2
2.28.3.11.1.7 HLM.SUBGLACIESCOLA_SUBGROUP 68 seqs
2.28.3.11.1.7.11371 OTU 1 seq
prokMSA_id:75357 AJ294346 Halomonas sp. HY-B2 isolate HY-B2
2.28.3.11.1.7.11978 OTU 1 seq
prokMSA_id:38116 AJ306892 Halomonas subglaciescola strain DSM 4683
2.28.3.11.1.7.12359 OTU 1 seq
prokMSA_id:61014 AB085649 Halomonas sp. TNB I20 
2.28.3.11.1.7.12357 OTU 1 seq
prokMSA_id:61012 AB085651 Halomonas sp. TNB I26 
2.28.3.11.1.7.15007 OTU 1 seq
prokMSA_id:24119 AF139993 Halomonas sp. ML-027 
2.28.3.11.1.7.1563 OTU 1 seq
prokMSA_id:8146 AF170753 Halomonas QSSC9-11 str. QSSC9-11
2.28.3.11.1.7.18129 OTU 1 seq
prokMSA_id:63144 AY121436 Halomonas sp. YIM-kkny11 
2.28.3.11.1.7.34428 OTU 2 seqs
prokMSA_id:61013 AB085650 Halomonas sp. TNB I24 
prokMSA_id:78680 AB094459 Halomonas sp. DSM.25.14 
2.28.3.11.1.7.40278 OTU 12 seqs
prokMSA_id:8144 U85872 Halomonas variabilis str. SW32
prokMSA_id:8145 U85873 Halomonas variabilis str. SW48
prokMSA_id:22626 AJ293821 Arctic seawater R7079 
prokMSA_id:31671 AJ293828 Arctic seawater R7103 
prokMSA_id:33823 AJ306893 Halomonas variabilis strain DSM 3051
prokMSA_id:61006 AB085658 Halomonas sp. NT N97 
prokMSA_id:61009 AB085655 Halomonas sp. SMT L20 
prokMSA_id:61010 AB085654 Halomonas sp. SMT L4 
prokMSA_id:76319 AF550586 Halomonas sp. Ko502 
prokMSA_id:76753 AF550585 Halomonas sp. Ko501 
prokMSA_id:81790 AJ431369 Halomonas frigidi strain DD 39
prokMSA_id:82157 AY167282 Halomonas variabilis strain ANT9112 
2.28.3.11.1.7.40863 OTU 4 seqs
prokMSA_id:35278 AF212203 Halomonas sp. Eplume3.D3 complete 
prokMSA_id:40996 AF212202 Halomonas sp. Eplume1.A1 complete 
prokMSA_id:81833 AY245450 Halomonas boliviensis strain LC2 
prokMSA_id:82388 AY245449 Halomonas boliviensis strain LC1 
2.28.3.11.1.7.41155 OTU 38 seqs
prokMSA_id:8143 U85871 Halomonas variabilis str. SW04
prokMSA_id:8149 AF199439 Halomonas aquamarina str. DS40M3
prokMSA_id:8150 AB022662 Halomonas MBIC1142 str. MBIC1142
prokMSA_id:8151 AB010845 str. HTB143
prokMSA_id:8152 AB010846 str. HTB069
prokMSA_id:8153 AB010866 str. HTB123
prokMSA_id:8154 AB010870 str. HTB111
prokMSA_id:8156 AB010847 str. HTB138
prokMSA_id:8157 AB010867 str. HTB122
prokMSA_id:17793 AB042501 Halomonas sp. TAG C4 
prokMSA_id:18077 AF212206 Halomonas sp. Althf1.1723a complete 
prokMSA_id:19859 AJ306888 Halomonas aquamarina strain DSM 30161
prokMSA_id:22745 AY062217 Halomonas sp. BYS-1 
prokMSA_id:23983 AF212216 Halomonas sp. Splume4.1864c complete 
prokMSA_id:24039 AF212214 Halomonas sp. Sbplume1.1840c complete 
prokMSA_id:25345 AF212201 Halomonas sp. Eplume2.B1 complete 
prokMSA_id:30624 AJ306891 Halomonas meridiana strain DSM 5425
prokMSA_id:33775 AF254112 Slope strain DII1a 
prokMSA_id:35481 X92149 sp. Lake Nakuru isolate 19N1
prokMSA_id:35815 AF212212 Halomonas sp. Ssw1.1818c complete 
prokMSA_id:40862 AJ306894 Halomonas venusta strain DSM 4743
prokMSA_id:42510 AF212217 Halomonas sp. Slthf1.1874b complete 
prokMSA_id:42563 AB016050 Halomonas sp. NIBH P1H13 
prokMSA_id:42780 AB016053 Halomonas sp. NIBH P1H25 
prokMSA_id:51042 X92151 sp. Lake Bogoria isolate 24B1
prokMSA_id:51148 X92150 sp. Lake Magadi isolate 21M1
prokMSA_id:52762 AF371860 clone p-860-a5 
prokMSA_id:54333 AB016052 Halomonas sp. NIBH P1H22 
prokMSA_id:61007 AB085657 Halomonas sp. ARD M36 
prokMSA_id:61008 AB085656 Halomonas sp. ARD M34 
prokMSA_id:70966 AB055787 Halomonas sp. Dsur-1 
prokMSA_id:71016 AF173968 Halomonas variabilis 
prokMSA_id:71069 AJ244730 Halomonas sp. V4.MS.05 
prokMSA_id:75016 AJ297766 Halomonas sp. HY-101 isolate HY-101
prokMSA_id:75806 AJ294343 Halomonas sp. HY-51m isolate HY-51m
prokMSA_id:76518 AJ294345 Halomonas sp. HY-23k isolate HY-23k
prokMSA_id:80894 AY189682 Halomonas sp. P_wp0221 
prokMSA_id:81690 AY204638 Halomonas variabilis strain HTG7 
2.28.3.11.1.7.42709 OTU 2 seqs
prokMSA_id:8147 AF139994 Halomonas ML-028 str. ML-028
prokMSA_id:30146 AB016049 Halomonas sp. NIBH P1H8 
2.28.3.11.1.7.42793 OTU 2 seqs
prokMSA_id:75036 AJ294347 Halomonas variabilis isolate HY-B3
prokMSA_id:75638 AJ294338 Halomonas variabilis isolate HY-51g
2.28.3.11.1.7.7335 OTU 1 seq
prokMSA_id:44149 AB016051 Halomonas sp. NIBH P1H14 
2.28.3.11.1.8 HLM.ELONGATA_SUBGROUP 24 seqs
2.28.3.11.1.8.11045 OTU 1 seq
prokMSA_id:36784 AY035894 Halomonas cupida 
2.28.3.11.1.8.12841 OTU 1 seq
prokMSA_id:67708 AB069958 Halomonas sp. SK1 
2.28.3.11.1.8.1621 OTU 1 seq
prokMSA_id:8167 L42616 Halomonas pacifica ACAM 345
2.28.3.11.1.8.1630 OTU 1 seq
prokMSA_id:8170 L04942 Halomonas halodenitrificans ATCC 13511
2.28.3.11.1.8.1631 OTU 1 seq
prokMSA_id:8171 X87217 Halomonas salina ATCC 49509
2.28.3.11.1.8.20409 OTU 1 seq
prokMSA_id:63473 AY121978 Halomonas elongata 
2.28.3.11.1.8.21114 OTU 1 seq
prokMSA_id:33427 X92142 sp. Lake Bogoria isolate 65B4
2.28.3.11.1.8.21949 OTU 1 seq
prokMSA_id:26353 AJ306889 Halomonas halmophila strain ATCC 19717
2.28.3.11.1.8.30052 OTU 3 seqs
prokMSA_id:8165 AJ243447 Halomonas salina ATCC 49509
prokMSA_id:8166 AJ243448 Halomonas salina DSM 5928
prokMSA_id:25638 T AJ295145 Halomonas salina strain F8-11
2.28.3.11.1.8.33482 OTU 2 seqs
prokMSA_id:23570 X92141 sp. Lake Bogoria isolate WB2
prokMSA_id:29327 X92139 sp. Lake Bogoria isolate 25B1
2.28.3.11.1.8.39554 OTU 2 seqs
prokMSA_id:25255 AJ133761 Halomonas sp. isolate CO12
prokMSA_id:28015 AF211860 Halomonas alimentaria 
2.28.3.11.1.8.41669 OTU 3 seqs
prokMSA_id:22659 AF280796 Halomonas sp. EF43 
prokMSA_id:42553 AF275709 Hailaer soda lake F8 
prokMSA_id:49824 AJ309560 Halomonas sp. IB-559 
2.28.3.11.1.8.42750 OTU 2 seqs
prokMSA_id:8160 X87218 Halomonas eurihalina str. F9-6 ATCC 49336
prokMSA_id:82347 AY205298 Halomonas sp. CR1-4 
2.28.3.11.1.8.42800 OTU 2 seqs
prokMSA_id:52855 X92135 sp. Crater Lake isolate 12C1
prokMSA_id:53048 X92140 sp. Lake Elmenteita isolate WE5
2.28.3.11.1.8.5285 OTU 1 seq
prokMSA_id:42664 X92136 sp. Lake Bogoria isolate WB5
2.28.3.11.1.8.8618 OTU 1 seq
prokMSA_id:43696 X92137 sp. Lake Magadi isolate 27M1
2.28.3.11.2 OSP.MARIS_SUBGROUP 15 seqs
2.28.3.11.2.11867 OTU 1 seq
prokMSA_id:60370 AF513467 Halomonadaceae PH27A 
2.28.3.11.2.16011 OTU 1 seq
prokMSA_id:45957 AF235120 gamma KTc1119 
2.28.3.11.2.1640 OTU 1 seq
prokMSA_id:8176 AB006764 Oceanospirillum multiglobuliferum IFO 13614
2.28.3.11.2.1659 OTU 1 seq
prokMSA_id:8181 AB015519 str. BD1-7
2.28.3.11.2.1678 OTU 1 seq
prokMSA_id:8189 M22365 Oceanospirillum linum ATCC 11336
2.28.3.11.2.21481 OTU 1 seq
prokMSA_id:55775 AF500006 Pseudomonas elongata strain DSM 6810 
2.28.3.11.2.2288 OTU 1 seq
prokMSA_id:26630 AY007676 Unknown marine gamma NOR5 
2.28.3.11.2.30073 OTU 2 seqs
prokMSA_id:8184 AB006761 Oceanospirillum beijerinckii subsp. pelagicum str. SWC UF1 I
prokMSA_id:8186 AB006760 Oceanospirillum beijerinckii subsp. beijerinckii IFO 15445
2.28.3.11.2.30064 OTU 3 seqs
prokMSA_id:8178 AB006763 Oceanospirillum maris subsp. williamsae str. 2b IFO 15468
prokMSA_id:8180 AB006762 Oceanospirillum maris subsp. hiroshimense IFO 13616
prokMSA_id:8183 AB006771 Oceanospirillum maris subsp. maris str. Jannasch 10 ATCC 275
2.28.3.11.2.42770 OTU 3 seqs
prokMSA_id:60639 AF406535 gamma clone AEGEAN_242 
prokMSA_id:60640 AF406532 gamma clone AEGEAN_204 
prokMSA_id:72166 AF406534 gamma clone AEGEAN_209 
2.28.3.11.3 MARINOMONAS_ASSEMBLAGE 22 seqs
2.28.3.11.3.1486 OTU 1 seq
prokMSA_id:79509 AF505730 Gamma UMB6E 
2.28.3.11.3.1695 OTU 1 seq
prokMSA_id:8194 X92176 Pseudomonas stanieri NCIMB 2040
2.28.3.11.3.1692 OTU 1 seq
prokMSA_id:8192 AB021367 ATCC 27130
2.28.3.11.3.1698 OTU 1 seq
prokMSA_id:8195 AF140000 Oceanospirillum ML-158 str. ML-158
2.28.3.11.3.17290 OTU 1 seq
prokMSA_id:70226 AY028196 Marine Tw-1 
2.28.3.11.3.185 OTU 1 seq
prokMSA_id:79392 AF382102 clone ZA2333c 
2.28.3.11.3.18838 OTU 1 seq
prokMSA_id:63249 AF523974 clone FW23 
2.28.3.11.3.21313 OTU 1 seq
prokMSA_id:79245 AF505734 UMB8C 
2.28.3.11.3.2316 OTU 1 seq
prokMSA_id:8201 AB006767 Oceanospirillum kriegii IFO 15467
2.28.3.11.3.2319 OTU 1 seq
prokMSA_id:8206 AB006765 Oceanospirillum jannaschii IFO 15466
2.28.3.11.3.2337 OTU 1 seq
prokMSA_id:8210 AJ238597 Marinomonas protea
2.28.3.11.3.2339 OTU 1 seq
prokMSA_id:8211 U70702 clone OM241
2.28.3.11.3.2343 OTU 1 seq
prokMSA_id:8214 X67025 Marinomonas vaga ATCC 27119
2.28.3.11.3.2365 OTU 1 seq
prokMSA_id:79615 AF468248 clone ARKDMS-38 
2.28.3.11.3.2576 OTU 1 seq
prokMSA_id:80239 AF468388 Arctic sea ice ARK10038 
2.28.3.11.3.3832 OTU 1 seq
prokMSA_id:79806 AF468285 clone ARKIA-132 
2.28.3.11.3.38755 OTU 2 seqs
prokMSA_id:79486 AF382119 clone ZA3411c 
prokMSA_id:79531 AF382113 clone ZA3313c 
2.28.3.11.3.527 OTU 1 seq
prokMSA_id:71553 AJ318203 gamma clone BIyi10
2.28.3.11.3.58 OTU 1 seq
prokMSA_id:79342 AF382127 clone ZA3706c 
2.28.3.11.3.5850 OTU 1 seq
prokMSA_id:36109 AJ431699 Thalassolituus oleivorans strain MIL-1
2.28.3.11.3.6458 OTU 1 seq
prokMSA_id:44003 AF353239 gamma clone Arctic95B-8 
2.28.3.11.99 VARIOUS 6 seqs
2.28.3.11.99.42529 OTU 6 seqs
prokMSA_id:22558 AF353238 gamma clone Arctic95B-7 
prokMSA_id:26646 AF353237 gamma clone Arctic95B-13 
prokMSA_id:79764 AF468308 clone ARKICE-72 
prokMSA_id:80311 AF468253 clone ARKDMS-13 
prokMSA_id:80534 AF468291 clone ARKIA-75 
prokMSA_id:81989 AY165586 Arctic sea ice clone ARKXVI/2-134 
2.28.3.12 ALCANIVORAX_AND_FUNDIBACTER_GROUP 6 seqs
2.28.3.12.16432 OTU 1 seq
prokMSA_id:23790 AF235122 Gamma KT0221 
2.28.3.12.20391 OTU 1 seq
prokMSA_id:25508 AB053131 Alcanivorax sp. Tak-1 
2.28.3.12.29873 OTU 3 seqs
prokMSA_id:8233 AB022706 str. POO-15
prokMSA_id:43775 AB053126 Alcanivorax sp. I2 
prokMSA_id:64882 AF328762 Alcanivorax venusti strain ISO4 
2.28.3.12.7325 OTU 1 seq
prokMSA_id:20619 AF143836 clone 4-Org2-35 
2.28.3.13 PSEUDOMONAS_AND_RELATIVES 685 seqs
2.28.3.13.1 ACINETOBACTER_SUBGROUP 178 seqs
2.28.3.13.1.1 MRX.CATARRHALIS_SUBGROUP 93 seqs
2.28.3.13.1.1.1505 OTU 1 seq
prokMSA_id:79510 AJ539104 Psychrobacter salsus strain DD48
2.28.3.13.1.1.15559 OTU 1 seq
prokMSA_id:68772 AF479327 Glacial ice Trans12 
2.28.3.13.1.1.21207 OTU 1 seq
prokMSA_id:79201 AF505736 UMB8G 
2.28.3.13.1.1.21558 OTU 1 seq
prokMSA_id:48597 AF005186 Moraxella ovis 
2.28.3.13.1.1.2239 OTU 1 seq
prokMSA_id:56708 AB087260 Moraxella sp. ATCC 29468 strain:IAM 14971
2.28.3.13.1.1.2366 OTU 1 seq
prokMSA_id:19444 AJ417490 Moraxella lincolnii strain CCUG 9405T
2.28.3.13.1.1.2417 OTU 1 seq
prokMSA_id:8249 AF005189 Moraxella cuniculi CCUG 27179
2.28.3.13.1.1.2431 OTU 1 seq
prokMSA_id:8250 AF005191 Moraxella atlantae str. 1922T
2.28.3.13.1.1.2434 OTU 1 seq
prokMSA_id:8254 U85880 Psychrobacter immobilis str. IC040
2.28.3.13.1.1.2456 OTU 1 seq
prokMSA_id:8261 AF005188 Moraxella cuniculi CCUG 2154
2.28.3.13.1.1.2517 OTU 1 seq
prokMSA_id:8281 AF005187 Moraxella caviae str. GP 11 CCUG 355
2.28.3.13.1.1.2544 OTU 1 seq
prokMSA_id:8298 AF005192 Moraxella phenylpyruvica str. 752/52
2.28.3.13.1.1.2542 OTU 1 seq
prokMSA_id:8297 U46144 Psychrobacter phenylpyruvicus ATCC 23333
2.28.3.13.1.1.30245 OTU 2 seqs
prokMSA_id:44896 AF441202 Psychrobacter jeotgali 
prokMSA_id:52888 AF441201 Psychrobacter jeotgali 
2.28.3.13.1.1.30381 OTU 2 seqs
prokMSA_id:8259 AF005182 Moraxella bovis ATCC 10900
prokMSA_id:8260 AF005183 Moraxella bovis str. 5
2.28.3.13.1.1.30398 OTU 3 seqs
prokMSA_id:8265 U10876 Moraxella catarrhalis ATCC 25238
prokMSA_id:8278 AF005185 Moraxella catarrhalis ATCC 25238
prokMSA_id:28350 A27627 M.catarrhalis 
2.28.3.13.1.1.31535 OTU 5 seqs
prokMSA_id:8262 AF005190 Moraxella osloensis str. 5873
prokMSA_id:8266 AB021321 str. rJ3
prokMSA_id:8267 X95304 Moraxella osloensis str. Ben 58
prokMSA_id:63603 AY043376 Moraxella osloensis 
prokMSA_id:72890 AJ505859 Moraxella osloensis strain PIV-10-1
2.28.3.13.1.1.32225 OTU 2 seqs
prokMSA_id:8253 U39399 Psychrobacter immobilis
prokMSA_id:8255 U46139 Psychrobacter immobilis ACAM 286
2.28.3.13.1.1.32768 OTU 24 seqs
prokMSA_id:8235 D64049 Moraxella lacunata str. A182 ATCC 17967
prokMSA_id:8237 AF005161 Moraxella lacunata ATCC 17956
prokMSA_id:8238 AF005162 Moraxella lacunata str. E7992
prokMSA_id:8239 AF005163 Moraxella lacunata str. 50141
prokMSA_id:8240 AF005164 Moraxella lacunata str. 50142
prokMSA_id:8241 AF005165 Moraxella lacunata str. E2371
prokMSA_id:8242 AF005166 Moraxella lacunata CDC 9833
prokMSA_id:8243 AF005167 Moraxella lacunata str. E3808
prokMSA_id:8244 AF005168 Moraxella lacunata str. A947
prokMSA_id:8246 AF005170 Moraxella lacunata ATCC 11748
prokMSA_id:8247 AF005171 Moraxella lacunata str. 28419/84
prokMSA_id:8248 AF005184 Moraxella equi str. 327/72
prokMSA_id:8268 AF005172 Moraxella nonliquefaciens NCTC 7784
prokMSA_id:8269 AF005173 Moraxella nonliquefaciens str. B2000
prokMSA_id:8270 AF005174 Moraxella nonliquefaciens str. 3179/66
prokMSA_id:8271 AF005175 Moraxella nonliquefaciens str. 13385/62
prokMSA_id:8272 AF005176 Moraxella nonliquefaciens str. P2581/88
prokMSA_id:8273 AF005177 Moraxella nonliquefaciens str. 2916/66
prokMSA_id:8274 AF005178 Moraxella nonliquefaciens str. B6270/90
prokMSA_id:8275 AF005179 Moraxella nonliquefaciens str. 826/61
prokMSA_id:8276 AF005180 Moraxella nonliquefaciens str. 270/60
prokMSA_id:8277 AF005181 Moraxella nonliquefaciens str. 672/58
prokMSA_id:38295 AF443789 Moraxella nonliquefaciens isolate 141365/00 
prokMSA_id:41659 AF443790 Moraxella nonliquefaciens isolate 96127/99 
2.28.3.13.1.1.33367 OTU 6 seqs
prokMSA_id:18681 AB016056 Psychrobacter pacificensis strain:NIBH P2J13
prokMSA_id:24089 AB016054 Psychrobacter pacificensis strain:NIBH P2J2
prokMSA_id:33577 AB016059 Psychrobacter pacificensis strain:NIBH P2K18
prokMSA_id:36033 AB016058 Psychrobacter pacificensis strain:NIBH P2K17
prokMSA_id:43031 AB016055 Psychrobacter pacificensis strain:NIBH P2J3
prokMSA_id:51808 AB016057 Psychrobacter pacificensis strain:NIBH P2K6=IFO 16279
2.28.3.13.1.1.34864 OTU 3 seqs
prokMSA_id:24648 AJ309941 Psychrobacter marincola strain KMM 277
prokMSA_id:27945 AJ309940 Psychrobacter submarinus strain KMM 225
prokMSA_id:79638 AF468382 Arctic sea ice ARK10000 
2.28.3.13.1.1.41095 OTU 28 seqs
prokMSA_id:8257 AF170743 Psychrobacter QSSC5-4 str. QSSC5-4
prokMSA_id:8292 U85875 Psychrobacter sp. str. IC008
prokMSA_id:8300 U85876 Psychrobacter glacincola str. IC084
prokMSA_id:8301 U85877 Psychrobacter glacincola str. IC007
prokMSA_id:8302 U85878 Psychrobacter glacincola str. IC018
prokMSA_id:8305 AF170747 Psychrobacter QSSC8-7 str. QSSC8-7
prokMSA_id:39704 AJ308373 Marine psychrotrophic MstK25 strain MstK25
prokMSA_id:43380 AJ297439 Psychrobacter aff. glacinola A1/C-aer/OII 
prokMSA_id:51114 AJ309942 Psychrobacter immobilis strain DSM 7229T
prokMSA_id:62417 AF529097 gamma clone FTL207 
prokMSA_id:63467 AJ495805 Psychrobacter sp. p3C 
prokMSA_id:69091 AJ310992 Psychrobacter sp. TAD1 strain TAD1
prokMSA_id:75020 AJ430828 Psychrobacter luti strain LMG 21276
prokMSA_id:77174 AJ430827 Psychrobacter fozii strain LMG 21280
prokMSA_id:79292 AF505724 Gamma UMB3G 
prokMSA_id:79299 AF505725 UMB4B 
prokMSA_id:79391 AF505739 UMB10E 
prokMSA_id:79453 AF505743 UMB13F 
prokMSA_id:79546 AF505746 Gamma UMB21A 
prokMSA_id:79867 AF468405 Arctic sea ice ARK9987 
prokMSA_id:80306 AF468383 Arctic sea ice ARK10009 
prokMSA_id:80477 AF468396 Arctic sea ice ARK10139 
prokMSA_id:81197 AY165598 Arctic sea ice clone ARKXVI/2-136 
prokMSA_id:82102 AY167310 Psychrobacter glacincola strain ANT9276b 
prokMSA_id:82179 AY165583 Antarctic sea ice clone ANTXI/4_14-26 
prokMSA_id:82182 AY167301 Psychrobacter glacincola strain ANT9221 
prokMSA_id:82289 AY167281 Psychrobacter glacincola strain ANT9104 
prokMSA_id:82364 AY167308 Psychrobacter glacincola strain ANT9253 
2.28.3.13.1.1.41915 OTU 2 seqs
prokMSA_id:79001 AB094456 Psychrobacter sp. MJYP.15.12 
prokMSA_id:81385 AY167286 Psychrobacter sp. ANT9153 
2.28.3.13.1.1.4860 OTU 1 seq
prokMSA_id:80503 AY198113 Psychrobacter sp. HLA 
2.28.3.13.1.1.6566 OTU 1 seq
prokMSA_id:21187 AJ269511 Moraxella canis strain LMG 11194T N7
2.28.3.13.1.1.7947 OTU 1 seq
prokMSA_id:27938 AY057116 Psychrobacter meningitidis 
2.28.3.13.1.5 ACN.CALCOACETICUS_SUBGROUP 1 seq
2.28.3.13.1.5.3035 OTU 1 seq
prokMSA_id:8315 Z93454 Acinetobacter sp. str. 942
2.28.3.13.1.6 ACN.BAUMANNII_SUBGROUP 7 seqs
2.28.3.13.1.6.11176 OTU 1 seq
prokMSA_id:60274 AF509821 Acinetobacter baylyi strain C5 
2.28.3.13.1.6.11177 OTU 1 seq
prokMSA_id:60277 AF509822 Acinetobacter baylyi strain A7 
2.28.3.13.1.6.30350 OTU 2 seqs
prokMSA_id:8320 Z93982 clone T58
prokMSA_id:8321 Z93988 clone T23
2.28.3.13.1.6.3050 OTU 1 seq
prokMSA_id:8322 X89709 Acinetobacter sp. DSM 587
2.28.3.13.1.6.42932 OTU 2 seqs
prokMSA_id:60260 AF509829 Acinetobacter gerneri 
prokMSA_id:60271 AF509820 Acinetobacter baylyi strain B2 
2.28.3.13.1.7 ACN.LWOFFII_SUBGROUP 17 seqs
2.28.3.13.1.7.14538 OTU 1 seq
prokMSA_id:39106 AY047216 Acinetobacter haemolyticus 
2.28.3.13.1.7.1546 OTU 1 seq
prokMSA_id:56661 AF509830 Acinetobacter tandoii 
2.28.3.13.1.7.15502 OTU 1 seq
prokMSA_id:68749 AF479352 Glacial ice G50-TB2 
2.28.3.13.1.7.15811 OTU 1 seq
prokMSA_id:77294 AY167841 Acinetobacter johnsonii strain SAFR-006 
2.28.3.13.1.7.2025 OTU 1 seq
prokMSA_id:34411 AJ318127 clone BIfciv2
2.28.3.13.1.7.25167 OTU 3 seqs
prokMSA_id:39819 AJ275037 Acinetobacter sp. phenon 1 strain LUH 3299
prokMSA_id:48405 AJ275038 Acinetobacter sp. phenon 1 strain LUH 3792Type
prokMSA_id:54545 AJ275039 Acinetobacter sp. phenon 1 strain LUH 4763
2.28.3.13.1.7.2923 OTU 1 seq
prokMSA_id:64652 AF467306 Acinetobacter sp. clone 91_11 
2.28.3.13.1.7.36728 OTU 7 seqs
prokMSA_id:16831 AJ301569 gamma GR-B1-2-37 
prokMSA_id:28098 AJ296554 GR-B1-2-4 clone GR-B1-2-4
prokMSA_id:29243 AJ296555 GR-B1-2-39 clone GR-B1-2-39
prokMSA_id:35395 AF324538 gamma BioIuz K38 
prokMSA_id:35636 AF336350 Acinetobacter sp. Wuba25 
prokMSA_id:40632 AF336348 Acinetobacter sp. Wuba16 
prokMSA_id:52159 AJ296557 GR-B1-2-33 clone GR-B1-2-33
2.28.3.13.1.7.8312 OTU 1 seq
prokMSA_id:74353 AF513979 Alkane-degrading soil MVAB Hex1 complete 
2.28.3.13.1.99 VARIOUS 60 seqs
2.28.3.13.1.99.40266 OTU 53 seqs
prokMSA_id:8342 X81659 Acinetobacter sp. DSM 590
prokMSA_id:8343 AB020207 Acinetobacter OM-E81 str. OM-H10
prokMSA_id:8344 Z93443 Acinetobacter sp. str. Group ten ATCC 17924
prokMSA_id:8351 X81662 Acinetobacter haemolyticus DSM 6962
prokMSA_id:8354 Z93451 Acinetobacter sp. str. 78
prokMSA_id:8383 X81663 Acinetobacter johnsonii DSM 6963
prokMSA_id:8385 X95303 Acinetobacter johnsonii str. Ben 56
prokMSA_id:8388 Z93992 clone T17
prokMSA_id:8390 X86591 Acinetobacter sp. str. 1F-19
prokMSA_id:8391 AF188300 Acinetobacter johnsonii str. P152
prokMSA_id:8392 AJ007008 Acinetobacter sp. str. LY1
prokMSA_id:8393 AB002655 str. HTA557
prokMSA_id:8394 AB002656 str. HTA554
prokMSA_id:8395 AB002657 str. HTA527
prokMSA_id:8396 AB002658 str. HTA608
prokMSA_id:8397 AB002659 str. HTA580
prokMSA_id:17643 AF189693 Acinetobacter sp. BC111 
prokMSA_id:28144 Z93440 Acinetobacter johnsonii strain ATCC 17909T
prokMSA_id:29502 AB062283 Acinetobacter sp. ST-550 
prokMSA_id:30135 AJ291843 Acinetobacter sp. IrT-R5M2-7 
prokMSA_id:31749 Z93437 Acinetobacter haemolyticus strain ATCC 17906T
prokMSA_id:31911 AF143838 clone AF1.3 
prokMSA_id:33110 AJ293693 Acinetobacter sp. phenon 3 strain LUH1740 Aci649
prokMSA_id:40823 AJ293692 Acinetobacter sp. phenon 3 strain LUH1737 Aci646
prokMSA_id:43048 AY055373 Acinetobacter sp. 'anoxic' 
prokMSA_id:43948 Z93444 Acinetobacter sp. strain ATCC 11171
prokMSA_id:47691 AJ303013 Acinetobacter sp. DVL00/879 
prokMSA_id:47756 AF324537 gamma BioIuz K32 
prokMSA_id:48977 AF189695 Acinetobacter sp. BC187 
prokMSA_id:52109 AJ293694 Acinetobacter sp. phenon 3 strain LUH1742T Aci651
prokMSA_id:56588 AF534215 clone Phe66 
prokMSA_id:58303 AF543466 Pseudacinetobacter hongkongensis 
prokMSA_id:58795 AF542962 Acinetobacter haemolyticus 
prokMSA_id:60333 AF534208 clone Phe12 
prokMSA_id:60337 AF534204 clone Nap34 
prokMSA_id:60341 AF534200 clone Glu57 
prokMSA_id:61831 AF529331 gamma clone CLi289 
prokMSA_id:62904 E10982 of Corynebacterium sp. J1 strain
prokMSA_id:64653 AF467305 Acinetobacter sp. clone 91_31 
prokMSA_id:64656 AF467302 Acinetobacter sp. clone 88_17 
prokMSA_id:64657 AF467299 Acinetobacter sp. clone 88_6 
prokMSA_id:64658 AF467300 Acinetobacter sp. clone 91_28 
prokMSA_id:64662 AF467295 Acinetobacter sp. clone 91_18 
prokMSA_id:64666 AF467294 Acinetobacter sp. clone 349_19 
prokMSA_id:66815 AF430124 Acinetobacter sp. dcm5A 
prokMSA_id:69970 AF143841 clone AF2-1D 
prokMSA_id:70386 AJ244764 Acinetobacter sp. V4.MO.29 
prokMSA_id:72138 AF467298 Acinetobacter sp. clone 349_15 
prokMSA_id:73095 AJ244765 Acinetobacter sp. V4.ME.25 
prokMSA_id:75963 AJ534674 gamma clone S15A-MN113
prokMSA_id:78070 AB074593 gamma clone:APe9_1
prokMSA_id:78104 AB099655 Acinetobacter johnsonii complete strain: S35
prokMSA_id:80373 AF468386 Arctic sea ice ARK10033 
2.28.3.13.1.99.42866 OTU 2 seqs
prokMSA_id:8331 X80285 Acinetobacter calcoaceticus
prokMSA_id:60258 AF509832 Acinetobacter genomosp. 11 
2.28.3.13.1.99.42936 OTU 5 seqs
prokMSA_id:60261 AF509828 Acinetobacter grimontii 
prokMSA_id:60262 AF509831 Acinetobacter johnsonii 
prokMSA_id:60264 AF509826 Acinetobacter tjernbergiae strain 7B02 
prokMSA_id:60267 AF509825 Acinetobacter tjernbergiae strain 7N16 
prokMSA_id:60270 AF509823 Acinetobacter towneri strain AB1110 
2.28.3.13.2 TEREDINIBACTER_SUBGROUP 16 seqs
2.28.3.13.2.1289 OTU 1 seq
prokMSA_id:27115 AF228694 Gamma EHK-1 
2.28.3.13.2.16054 OTU 1 seq
prokMSA_id:38752 AB052965 Pseudomonas sp. ND137 
2.28.3.13.2.16962 OTU 1 seq
prokMSA_id:77433 AY150183 Symbiont LP1 of Lyrodus pedicellatus 
2.28.3.13.2.16973 OTU 1 seq
prokMSA_id:77437 AY150184 Symbiont LP2 of Lyrodus pedicellatus 
2.28.3.13.2.17426 OTU 1 seq
prokMSA_id:62459 AY102027 Gamma HTCC230 
2.28.3.13.2.18539 OTU 1 seq
prokMSA_id:39706 AF102866 Unclassified Pseudomonas group 
2.28.3.13.2.30721 OTU 2 seqs
prokMSA_id:39120 AB054136 gamma HOC2 
prokMSA_id:52455 AB054161 gamma HOC27 
2.28.3.13.2.3805 OTU 1 seq
prokMSA_id:8405 Z31658 str. SCB11
2.28.3.13.2.3803 OTU 1 seq
prokMSA_id:8404 U58338 Microbulbifer hydrolyticus str. IRE-31
2.28.3.13.2.3808 OTU 1 seq
prokMSA_id:8406 AF055269 Microbulbifer 2-40 str. 2-40
2.28.3.13.2.3811 OTU 1 seq
prokMSA_id:8407 AB015541 str. BD2-13
2.28.3.13.2.3813 OTU 1 seq
prokMSA_id:8408 AB013256 str. NKB4
2.28.3.13.2.3815 OTU 1 seq
prokMSA_id:8409 AF006607 Endobugula sertula str. BnPV
2.28.3.13.2.4173 OTU 1 seq
prokMSA_id:80469 AF468250 clone ARKDMS-49 
2.28.3.13.2.5826 OTU 1 seq
prokMSA_id:73400 AF482708 Pseudomonas sp. PB1 
2.28.3.13.4 PS.OLEOVORANS 2 seqs
2.28.3.13.4.31051 OTU 2 seqs
prokMSA_id:8413 D84018 Pseudomonas oleovorans IAM 1508
prokMSA_id:71549 D84018 Pseudomonas oleovorans complete 
2.28.3.13.5 PS.AERUGINOSA_SUBGROUP 96 seqs
2.28.3.13.5.14743 OTU 1 seq
prokMSA_id:46393 AJ289162 Cellvibrio sp. R4069 
2.28.3.13.5.20432 OTU 1 seq
prokMSA_id:49042 AJ414029 
2.28.3.13.5.20589 OTU 1 seq
prokMSA_id:79182 AF468449 Pseudomonas sp. Pss 14 
2.28.3.13.5.32074 OTU 5 seqs
prokMSA_id:29570 AJ316017 Paederus melanurus endosymbiont 
prokMSA_id:30919 AJ316019 Paederidus ruficollis endosymbiont 
prokMSA_id:34658 AJ316018 Paederus riparius endosymbiont 
prokMSA_id:37950 AJ295331 Paederus sabaeus endosymbiont 
prokMSA_id:46183 AJ316016 Paederus fuscipes endosymbiont 
2.28.3.13.5.35123 OTU 20 seqs
prokMSA_id:8416 U37339 Pseudomonas sp. str. CRE 12
prokMSA_id:8417 AB021329 str. rJ11
prokMSA_id:8418 AB021335 str. rJ17
prokMSA_id:8419 X96787 str. IpA-1
prokMSA_id:8420 AJ009474 clone SJA-67
prokMSA_id:8421 AJ009491 clone SJA-129
prokMSA_id:8422 AF039489 Pseudomonas B13 str. B13
prokMSA_id:8426 Z76659 Pseudomonas citronellolis DSM 50332
prokMSA_id:8427 AB021396 Pseudomonas citronellolis ATCC 13674
prokMSA_id:8428 Y13246 str. A3
prokMSA_id:18230 AB076873 Pseudomonas sp. clone:OS1L-17
prokMSA_id:20529 AB076857 Pseudomonas sp. P400Y-1 
prokMSA_id:32513 AF208025 Pseudomonas sp. AT2 
prokMSA_id:35995 AJ306834 Pseudomonas sp. isolate ON3
prokMSA_id:43859 AJ311160 Pseudomonas sp. KIE171-B strain KIE171-B
prokMSA_id:58403 AB007999 Pseudomonas sp. WAS2 
prokMSA_id:61102 AF530072 Pseudomonas citronellolis strain TERIDB18 complete 
prokMSA_id:70116 AF530073 Pseudomonas citronellolis strain TERIDB26 complete 
prokMSA_id:71823 AF530069 Pseudomonas citronellolis strain TERIDB3 complete 
prokMSA_id:72643 AF530070 Pseudomonas citronellolis strain TERIDB9 complete 
2.28.3.13.5.37030 OTU 58 seqs
prokMSA_id:8431 U37338 Pseudomonas sp. str. CRE 11
prokMSA_id:8435 Z76651 Pseudomonas aeruginosa LMG 1242
prokMSA_id:8437 U38445 Pseudomonas aeruginosa
prokMSA_id:8438 D87346 unnamed organism
prokMSA_id:8440 AF137358 Pseudomonas aeruginosa
prokMSA_id:8441 AJ009462 clone SJA-38
prokMSA_id:8442 AJ009472 clone SJA-64
prokMSA_id:8444 AJ249451 Pseudomonas aeruginosa str. AL98
prokMSA_id:8446 AF157689 Pseudomonas aeruginosa str. 86351
prokMSA_id:8448 AB015516 str. BD1-3
prokMSA_id:8450 AB015563 str. BD4-16
prokMSA_id:8451 AB015564 str. BD5-7
prokMSA_id:8452 AB015573 str. BD6-3
prokMSA_id:8454 AB015249 str. JTB12
prokMSA_id:8455 AF031152 Pseudomonas Bu34 str. Bu34
prokMSA_id:16918 AB037552 Pseudomonas aeruginosa strain:#790
prokMSA_id:18018 AF237678 Pseudomonas aeruginosa complete 
prokMSA_id:21552 AF216704 Pseudomonas aeruginosa 1001 
prokMSA_id:21740 AB037549 Pseudomonas aeruginosa strain:#777
prokMSA_id:21814 AB037559 Pseudomonas aeruginosa strain:H103
prokMSA_id:28841 AF225956 Pseudomonas aeruginosa 
prokMSA_id:30696 AB073312 Pseudomonas aeruginosa 
prokMSA_id:30862 AB037558 Pseudomonas aeruginosa strain:CP-1
prokMSA_id:31055 AB037547 Pseudomonas aeruginosa strain:#129
prokMSA_id:33622 AB037554 Pseudomonas aeruginosa strain:#797
prokMSA_id:34429 AJ309500 Pseudomonas aeruginosa strain 42A2 NCBI 40045
prokMSA_id:35045 AF094713 Pseudomonas aeruginosa strain ATCC 10145 
prokMSA_id:36294 AF323607 Pseudomonas aeruginosa DL1 
prokMSA_id:38254 AB037560 Pseudomonas aeruginosa strain:H636
prokMSA_id:39699 AF094718 Pseudomonas aeruginosa strain ATCC 15442 
prokMSA_id:42050 AE004844 Pseudomonas aeruginosa PA01 section 405 of 529 of the comple
prokMSA_id:44181 AF227866 str. 61716 
prokMSA_id:45396 AJ387904 Pseudomonas sp. strain OLB-1
prokMSA_id:45885 AF193514 Pseudomonas aeruginosa 
prokMSA_id:46706 AE004949 Pseudomonas aeruginosa PA01 section 510 of 529 of the comple
prokMSA_id:47079 AB037546 Pseudomonas aeruginosa strain:#47
prokMSA_id:48315 NC_002516 Pseudomonas aeruginosa PA01 complete genome
prokMSA_id:49178 AE004091 Pseudomonas aeruginosa PA01 complete genome
prokMSA_id:50970 AF417876 Pseudomonas aeruginosa 
prokMSA_id:51883 AB037553 Pseudomonas aeruginosa strain:#796
prokMSA_id:51924 AE004883 Pseudomonas aeruginosa PA01 section 444 of 529 of the comple
prokMSA_id:52395 AB037550 Pseudomonas aeruginosa strain:#780
prokMSA_id:52590 AB037548 Pseudomonas aeruginosa strain:#649
prokMSA_id:52867 AB037562 Pseudomonas aeruginosa strain:H707
prokMSA_id:59263 AE004501 Pseudomonas aeruginosa PA01 section 62 of 529 of the complet
prokMSA_id:59706 AB091760 Pseudomonas aeruginosa complete 
prokMSA_id:61832 AF529330 gamma clone CLi288 
prokMSA_id:62409 AF529105 gamma clone FTL229 
prokMSA_id:70154 Z76672 P.aeruginosa strain DSM 50071T 
prokMSA_id:70447 AF094720 Pseudomonas aeruginosa strain ATCC 33350 
prokMSA_id:71400 AF094716 Pseudomonas aeruginosa strain ATCC 27316 
prokMSA_id:72949 AF094714 Pseudomonas aeruginosa strain ATCC 4207 
prokMSA_id:73809 AF094719 Pseudomonas aeruginosa strain ATCC 27853 
prokMSA_id:74648 AB037561 Pseudomonas aeruginosa strain:H706
prokMSA_id:76656 AY162139 Pseudomonas aeruginosa strain BHP7-6 
prokMSA_id:78808 AB088116 Pseudomonas thermaerum 
prokMSA_id:81887 AJ550306 Pseudomonas aeruginosa isolate OK1
prokMSA_id:82037 AJ549293 Pseudomonas aeruginosa isolate AT10
2.28.3.13.5.3725 OTU 1 seq
prokMSA_id:71972 X92133 sp. Lake Elmenteita isolate 45E3
2.28.3.13.5.3849 OTU 1 seq
prokMSA_id:8429 AF039488 Pseudomonas 273 str. 273
2.28.3.13.5.3877 OTU 1 seq
prokMSA_id:8443 AF023658 Pseudomonas aeruginosa str. CW-96-1
2.28.3.13.5.42203 OTU 5 seqs
prokMSA_id:24949 AB037545 Pseudomonas aeruginosa strain:ATCC 27853
prokMSA_id:43659 AB037557 Pseudomonas aeruginosa strain:#985-02
prokMSA_id:61194 AF531100 Rhodococcus erythropolis 
prokMSA_id:61195 AF531099 Pseudomonas aeruginosa 
prokMSA_id:71522 AJ308297 Pseudomonas aeruginosa isolate ICMP 8647
2.28.3.13.5.5158 OTU 1 seq
prokMSA_id:43286 X92134 sp. Lake Nakuru isolate 52N3
2.28.3.13.5.8437 OTU 1 seq
prokMSA_id:74387 AJ240921 gamma CHAB-III-7 5' 
2.28.3.13.7 PS.STUTZERI_SUBGROUP 20 seqs
2.28.3.13.7.15666 OTU 1 seq
prokMSA_id:60916 AJ312176 Pseudomonas stutzeri strain 24a51
2.28.3.13.7.16420 OTU 1 seq
prokMSA_id:39439 AJ310484 Pseudomonas stutzeri strain pssu2
2.28.3.13.7.16535 OTU 1 seq
prokMSA_id:76785 AJ297767 Pseudomonas stutzeri isolate HY-105
2.28.3.13.7.18644 OTU 1 seq
prokMSA_id:71026 AY028398 Teredinibacter turnerae 
2.28.3.13.7.18894 OTU 1 seq
prokMSA_id:70494 AJ240920 gamma CHAB-V-35 5' 
2.28.3.13.7.20496 OTU 1 seq
prokMSA_id:48401 AJ308319 Azotobacter beijerinckii isolate ICMP 8673; ATCC 19360
2.28.3.13.7.20823 OTU 1 seq
prokMSA_id:78598 AB088754 Pseudomonas stutzeri 
2.28.3.13.7.2925 OTU 1 seq
prokMSA_id:64654 AF467304 Pseudomonas sp. clone 349_11 
2.28.3.13.7.29879 OTU 5 seqs
prokMSA_id:23630 AJ270456 Pseudomonas stutzeri strain 4C29
prokMSA_id:24944 AJ270457 Pseudomonas stutzeri strain 4C38
prokMSA_id:26492 AJ270454 Pseudomonas stutzeri strain 4C57
prokMSA_id:36560 AJ270458 Pseudomonas stutzeri strain 4C68
prokMSA_id:39267 AJ270455 Pseudomonas stutzeri strain 4C71
2.28.3.13.7.3924 OTU 1 seq
prokMSA_id:8460 U58661 Pseudomonas stutzeri str. JM300
2.28.3.13.7.3955 OTU 1 seq
prokMSA_id:8477 AF143245 Pseudomonas stutzeri str. A1501
2.28.3.13.7.3989 OTU 1 seq
prokMSA_id:8485 AF152596 Pseudomonas stutzeri str. 18
2.28.3.13.7.3993 OTU 1 seq
prokMSA_id:8488 L37366 Pseudomonas mendocina str. KR
2.28.3.13.7.42340 OTU 2 seqs
prokMSA_id:8487 U22426 Pseudomonas stutzeri str. 19SMN4 DSM 6084
prokMSA_id:8505 U26419 Pseudomonas stutzeri str. ST27MN3
2.28.3.13.7.5272 OTU 1 seq
prokMSA_id:66185 AJ488079 clone IB-26
2.28.3.13.8 PS.MENDOCINA_SUBGROUP 18 seqs
2.28.3.13.8.10213 OTU 1 seq
prokMSA_id:66758 AF118398 Pseudomonas sp. AST1 
2.28.3.13.8.1114 OTU 1 seq
prokMSA_id:80099 AF468287 clone ARKIA-103 
2.28.3.13.8.14803 OTU 1 seq
prokMSA_id:75837 AJ532691 gamma clone Gitt-KF-67
2.28.3.13.8.15739 OTU 1 seq
prokMSA_id:30870 AJ308318 Azorhizophilus paspali isolate ICMP 7469; ATCC 23833
2.28.3.13.8.1649 OTU 1 seq
prokMSA_id:80105 AJ544239 Pseudomonas sp. DY-A 
2.28.3.13.8.17128 OTU 1 seq
prokMSA_id:53970 AF139998 Pseudomonas sp. ML-124 
2.28.3.13.8.19098 OTU 1 seq
prokMSA_id:48284 AB054156 gamma HOC22 
2.28.3.13.8.21647 OTU 1 seq
prokMSA_id:71406 AF326380 Pseudomonas sp. PCP2 
2.28.3.13.8.29662 OTU 3 seqs
prokMSA_id:66615 AF500280 Pseudomonas sp. SMCC B0252 
prokMSA_id:66619 AF500279 Pseudomonas sp. SMCC B0251 
prokMSA_id:66759 AF500619 Pseudomonas sp. SMCC B0307 
2.28.3.13.8.42949 OTU 2 seqs
prokMSA_id:69717 AJ295645 Pseudomonas sp. KF/GS-Gitt2-53 
prokMSA_id:77091 AJ532693 gamma clone Gitt-KF-111
2.28.3.13.8.4735 OTU 1 seq
prokMSA_id:8525 AF140011 Pseudomonas pseudoalcaligenes str. ML-A04
2.28.3.13.8.4751 OTU 1 seq
prokMSA_id:8531 D88521 Agrobacterium agile IAM 12615
2.28.3.13.8.5316 OTU 1 seq
prokMSA_id:66198 AJ278107 Pseudomonas sp. strain KI
2.28.3.13.8.726 OTU 1 seq
prokMSA_id:56532 AJ306779 clone SHA-35
2.28.3.13.8.8855 OTU 1 seq
prokMSA_id:22044 AF286035 Saltmarsh clone LCP-79 
2.28.3.13.10 PS.ALCALIGENES_SUBGROUP 2 seqs
2.28.3.13.10.10 OTU 1 seq
prokMSA_id:79328 AJ431228 BHI80-88 strain BHI80-88
2.28.3.13.10.17494 OTU 1 seq
prokMSA_id:61825 AF529335 gamma clone CLi40 
2.28.3.13.11 PS.STRAMINEA_SUBGROUP 4 seqs
2.28.3.13.11.31244 OTU 2 seqs
prokMSA_id:8562 U01916 Pseudomonas flavescens str. B62 NCPPB 3063
prokMSA_id:52398 AJ308320 Pseudomonas flavescens isolate ICMP 13539; ATCC 51555
2.28.3.13.11.4815 OTU 1 seq
prokMSA_id:8561 AB021419 IAM 12023
2.28.3.13.11.5317 OTU 1 seq
prokMSA_id:66199 AJ278108 Pseudomonas sp. strain KY
2.28.3.13.12 PS.LUTEOLA_SUBGROUP 4 seqs
2.28.3.13.12.3020 OTU 1 seq
prokMSA_id:57488 AB096215 Gamma Y-134 
2.28.3.13.12.31249 OTU 3 seqs
prokMSA_id:8566 D84002 Pseudomonas luteola IAM 13000
prokMSA_id:25281 AF386741 Pseudomonas sp. 13BT 
prokMSA_id:70387 D84002 Chryseomonas luteola complete 
2.28.3.13.13 PS.PUTIDA_SUBGROUP 39 seqs
2.28.3.13.13.10888 OTU 1 seq
prokMSA_id:66813 AF430125 Pseudomonas sp. dcm7B 
2.28.3.13.13.11521 OTU 1 seq
prokMSA_id:67520 AF494092 Burkholderia caryophylli strain YS13 
2.28.3.13.13.12641 OTU 1 seq
prokMSA_id:52677 AJ289161 Cellvibrio sp. R4001 
2.28.3.13.13.14796 OTU 1 seq
prokMSA_id:68618 AY081984 clone KRA30+17 
2.28.3.13.13.14824 OTU 1 seq
prokMSA_id:75843 AJ534672 gamma clone S15A-MN7
2.28.3.13.13.1626 OTU 1 seq
prokMSA_id:48811 AJ289160 Cellvibrio mixtus subsp. mixtus strain ACM 2603
2.28.3.13.13.16362 OTU 1 seq
prokMSA_id:30985 AJ289164 Cellvibrio sp. R4079 
2.28.3.13.13.16605 OTU 1 seq
prokMSA_id:70130 AF065166 Pseudomonas sp. PH1 
2.28.3.13.13.18930 OTU 1 seq
prokMSA_id:32552 AJ296559 GR-Sh2-34 clone GR-Sh2-34
2.28.3.13.13.20462 OTU 1 seq
prokMSA_id:25527 AF448514 Cellvibrio fulvus NCIMB 8634 
2.28.3.13.13.21952 OTU 1 seq
prokMSA_id:26354 AF448515 Cellvibrio mixtus subsp. mixtus ACM 2601 
2.28.3.13.13.30149 OTU 3 seqs
prokMSA_id:8598 AB030085 Pseudomonas MBIC2027 str. MBIC2027
prokMSA_id:28224 AF299120 S17sBac13 complete 
prokMSA_id:75047 AJ294342 Pseudomonas sp. HY-95/2-1 isolate HY-95/2-1
2.28.3.13.13.40820 OTU 14 seqs
prokMSA_id:8575 D37924 Pseudomonas putida str. mt-2 JCM 6156
prokMSA_id:8585 D85998 Pseudomonas putida IFO 14671
prokMSA_id:8589 AF131103 Pseudomonas putida str. MTB6
prokMSA_id:8592 AJ002805 str. R1
prokMSA_id:8593 D83788 Pseudomonas putida str. K23-1
prokMSA_id:27902 AY040872 Pseudomonas sp. WBC-3 
prokMSA_id:29084 AF307864 Pseudomonas putida 5IIIASal 
prokMSA_id:39403 AF307867 Pseudomonas putida PR1MN1 
prokMSA_id:45592 AF180146 Pseudomonas putida 
prokMSA_id:45918 AF307866 Pseudomonas putida 3IA2NH 
prokMSA_id:46263 AJ132993 Pseudomonas putida isolate #HR9 
prokMSA_id:66814 AF430123 Pseudomonas sp. dcm5B 
prokMSA_id:72969 AJ271219 Pseudomonas putida strain P1
prokMSA_id:74715 AF307865 Pseudomonas putida 3IIIA2NH 
2.28.3.13.13.42512 OTU 4 seqs
prokMSA_id:29893 AJ252144 Schineria larvae strain L1/57
prokMSA_id:33407 AJ252146 Schineria larvae strain L2/11
prokMSA_id:46292 AJ252145 Schineria larvae strain L1/58
prokMSA_id:47724 AJ252143 Schineria larvae strain L1/68
2.28.3.13.13.42578 OTU 2 seqs
prokMSA_id:63474 AY121982 Pseudomonas putida strain RA16 
prokMSA_id:63476 AY121981 Pseudomonas putida strain RA9 
2.28.3.13.13.42802 OTU 2 seqs
prokMSA_id:8603 AF072688 Pseudomonas mosselii CIP 105259
prokMSA_id:29593 AF181576 Pseudomonas cf. monteilii 
2.28.3.13.13.6592 OTU 1 seq
prokMSA_id:80705 AF468335 clone ARKMP-70 
2.28.3.13.13.6777 OTU 1 seq
prokMSA_id:73539 AJ289163 Cellvibrio sp. R4075 
2.28.3.13.13.9430 OTU 1 seq
prokMSA_id:43780 AF251334 Pseudomonas sp. SV4 
2.28.3.13.14 PSEUDOMONAS_SUBGROUP 99 seqs
2.28.3.13.14.1 PS.AMYGDALI_SUBGROUP 36 seqs
2.28.3.13.14.1.10466 OTU 1 seq
prokMSA_id:75209 AJ519791 Pseudomonas sp. AC-167 
2.28.3.13.14.1.10689 OTU 1 seq
prokMSA_id:81842 AF110275 Beggiatoa sp. AA5A 
2.28.3.13.14.1.11820 OTU 1 seq
prokMSA_id:60326 AF534216 clone Phe67 
2.28.3.13.14.1.11842 OTU 1 seq
prokMSA_id:60342 AF534198 clone Glu41 
2.28.3.13.14.1.12990 OTU 1 seq
prokMSA_id:67771 AF420370 isolate C1_B045 
2.28.3.13.14.1.13930 OTU 1 seq
prokMSA_id:76301 AJ518787 gamma clone JG37-AG-122
2.28.3.13.14.1.14809 OTU 1 seq
prokMSA_id:22889 AJ318148 alpha clone BIji17
2.28.3.13.14.1.15130 OTU 1 seq
prokMSA_id:30768 AB038140 Pseudomonas putida strain:P-5
2.28.3.13.14.1.16382 OTU 1 seq
prokMSA_id:30992 AF448513 Cellvibrio vulgaris NCIMB 8633 
2.28.3.13.14.1.17294 OTU 1 seq
prokMSA_id:70229 AY130995 Leella ganghwensis strain JC2045 
2.28.3.13.14.1.17415 OTU 1 seq
prokMSA_id:31704 AJ315452 marine isolate LQ-2001
2.28.3.13.14.1.17574 OTU 1 seq
prokMSA_id:24541 AY029759 Pseudomonas sp. SMCC B0333 
2.28.3.13.14.1.18692 OTU 1 seq
prokMSA_id:69857 AJ240912 gamma CHAB-III-1 5' 
2.28.3.13.14.1.19055 OTU 1 seq
prokMSA_id:55485 AF368760 Pseudomonas sp. OPS1 
2.28.3.13.14.1.19048 OTU 1 seq
prokMSA_id:31959 AF448037 Pseudomonas sp. SCD-14b 
2.28.3.13.14.1.32209 OTU 7 seqs
prokMSA_id:8643 AF001651 clone OCS5
prokMSA_id:19508 AJ400344 marine ZD0107 
prokMSA_id:33605 AF241654 gamma KTc1112 
prokMSA_id:40069 AF354613 gamma Arctic97A-18 
prokMSA_id:45850 AF173975 OCS5 
prokMSA_id:53597 AY033328 gamma MB12G02 and 23S genes 
prokMSA_id:54017 AF268217 EBAC27G05 and 23S genes 
2.28.3.13.14.1.42287 OTU 6 seqs
prokMSA_id:8654 D84019 IAM 1155
prokMSA_id:33035 AJ292672 WD259 clone WD259
prokMSA_id:40116 AY014803 Pseudomonas sp. NZ011 
prokMSA_id:48047 AF388207 Pseudomonas sp. NZ099 
prokMSA_id:60447 AY131214 Pseudomonas sp. Fa2 
prokMSA_id:82206 AY206685 Pseudomonas jessenii strain PS06 complete 
2.28.3.13.14.1.42343 OTU 3 seqs
prokMSA_id:8637 Z76658 Pseudomonas cichorii str. PC 1 LMG 2162
prokMSA_id:8638 AB021398 Pseudomonas cichorii str. PC 1 ATCC 10857
prokMSA_id:30292 AJ308302 Pseudomonas cichorii isolate ICMP 5707; ATCC 10857
2.28.3.13.14.1.42843 OTU 2 seqs
prokMSA_id:40716 AJ288145 Pseudomonas sp. isolate SK-1-3-4
prokMSA_id:70399 AJ288142 Pseudomonas sp. isolate Ki-723
2.28.3.13.14.1.5647 OTU 1 seq
prokMSA_id:8629 AB015547 str. BD3-1
2.28.3.13.14.1.7454 OTU 1 seq
prokMSA_id:50734 AJ400356 marine ZD0433 
2.28.3.13.14.1.88 OTU 1 seq
prokMSA_id:79355 AF382137 clone ZA3412c 
2.28.3.13.14.2 PS.TOLAASII_SUBGROUP 38 seqs
2.28.3.13.14.2.11780 OTU 1 seq
prokMSA_id:66956 AF482685 Pseudomonas sp. NMX 
2.28.3.13.14.2.13964 OTU 1 seq
prokMSA_id:53457 AF139996 Pseudomonas sp. ML-120 
2.28.3.13.14.2.16927 OTU 1 seq
prokMSA_id:47332 AJ426421 Oleispira antarcticam strain RB-9
2.28.3.13.14.2.18284 OTU 1 seq
prokMSA_id:32498 AF205133 Pseudomonas sp. 'FSL D1-015' 
2.28.3.13.14.2.18323 OTU 1 seq
prokMSA_id:25298 AF290493 sheep mite Welshpool 49 
2.28.3.13.14.2.20195 OTU 1 seq
prokMSA_id:70607 AF420363 isolate C1_B013 
2.28.3.13.14.2.2342 OTU 1 seq
prokMSA_id:79601 AJ537602 Pseudomonas meridiana strain CMS 38T
2.28.3.13.14.2.304 OTU 1 seq
prokMSA_id:17958 AF354596 gamma Arctic96B-9 
2.28.3.13.14.2.3241 OTU 1 seq
prokMSA_id:20181 AJ296549 GR-296.II.89 clone GR-296.II.89
2.28.3.13.14.2.40430 OTU 21 seqs
prokMSA_id:8687 D86003 Pseudomonas fluorescens NCIMB 9815
prokMSA_id:8702 Z76656 Pseudomonas aureofaciens DSM 6698
prokMSA_id:8704 AB013843 str. 10-12.H
prokMSA_id:8705 AB013844 str. 4-5.l
prokMSA_id:8706 AB013845 str. 6-13.J
prokMSA_id:8709 AJ002801 str. 150
prokMSA_id:20085 AF326378 Pseudomonas sp. MG1 
prokMSA_id:36197 AJ252659 Agricultural soil clone SC-I-83 
prokMSA_id:37569 AF351240 Pseudomonas sp. cb3 
prokMSA_id:43407 AF380370 Pseudomonas sp. CM10-2 
prokMSA_id:44427 AF268968 Pseudomonas brennerii complete 
prokMSA_id:47203 AF094732 Pseudomonas fluorescens strain ATCC 49642 
prokMSA_id:51863 AF380369 Pseudomonas sp. CM10-1 
prokMSA_id:66023 AY043360 Pseudomonas rhodesiae strain KK1 complete 
prokMSA_id:69848 AF094731 Pseudomonas fluorescens strain ATCC 17574 
prokMSA_id:69974 AF094722 Pseudomonas aureofaciens 
prokMSA_id:72334 AY093461 clone MB-A2-106 
prokMSA_id:72628 AF348507 Pseudomonas tolaasii complete 
prokMSA_id:74250 AF348508 Pseudomonas corrugata complete 
prokMSA_id:76618 AY160686 G5 
prokMSA_id:79186 AJ537603 Pseudomonas proteolytica strain CMS 64T
2.28.3.13.14.2.42720 OTU 2 seqs
prokMSA_id:8679 AF195876 Pseudomonas KA2 str. KA2
prokMSA_id:62415 AF529099 gamma clone FTL213 
2.28.3.13.14.2.5721 OTU 1 seq
prokMSA_id:50502 AY053495 AT425_EubG1 
2.28.3.13.14.2.5752 OTU 1 seq
prokMSA_id:8674 AF105387 Pseudomonas PsI str. PsI
2.28.3.13.14.2.6418 OTU 1 seq
prokMSA_id:8703 AB015581 str. BD7-5
2.28.3.13.14.2.6439 OTU 1 seq
prokMSA_id:8711 AF177918 Pseudomonas IpA-92 str. IpA-92
2.28.3.13.14.2.7063 OTU 1 seq
prokMSA_id:58547 AF386080 Pseudomonas mediterranea strain CFBP 5447 
2.28.3.13.14.2.9654 OTU 1 seq
prokMSA_id:21505 AF452103 Pseudomonas cellulosa 
2.28.3.13.14.7 PS.TAETROLENS_SUBGROUP 3 seqs
2.28.3.13.14.7.19352 OTU 1 seq
prokMSA_id:41050 AB041885 Pseudomonas sp. E-3 
2.28.3.13.14.7.41645 OTU 2 seqs
prokMSA_id:8753 D84027 Pseudomonas taetrolens IAM 1653
prokMSA_id:73652 D84027 Pseudomonas taetrolens complete 
2.28.3.13.14.9 PS.AZOTOFORMANS_SUBGROUP 3 seqs
2.28.3.13.14.9.15157 OTU 1 seq
prokMSA_id:46424 AF354611 gamma Arctic96A-14 
2.28.3.13.14.9.17703 OTU 1 seq
prokMSA_id:77535 AY150578 Symbiont LP3 of Lyrodus pedicellatus 
2.28.3.13.14.9.6570 OTU 1 seq
prokMSA_id:8771 AF170731 Pseudomonas QSSC1-9 str. QSSC1-9
2.28.3.13.14.99 VARIOUS 19 seqs
2.28.3.13.14.99.40410 OTU 12 seqs
prokMSA_id:16611 AF251333 Pseudomonas sp. SV3 
prokMSA_id:23945 AJ417071 Pseudomonas sp. PGNR1 strain PGNR1
prokMSA_id:29949 AJ278812 Pseudomonas fluorescens strain CHA0
prokMSA_id:31990 AY014820 Pseudomonas sp. NZ102 
prokMSA_id:40472 AY014819 Pseudomonas sp. NZ101 
prokMSA_id:40896 AF320993 Pseudomonas sp. NZI7 
prokMSA_id:44937 AY014818 Pseudomonas sp. NZ097 
prokMSA_id:51887 AJ417073 Pseudomonas sp. PF strain PF
prokMSA_id:58732 AF521651 Pseudomonas sp. 7-1 
prokMSA_id:66228 AF509334 Pseudomonas sp. HS21 
prokMSA_id:71021 AF094726 Pseudomonas fluorescens strain ATCC 17386 
prokMSA_id:81594 AY196702 Pseudomonas fluorescens strain MM-B16 
2.28.3.13.14.99.41815 OTU 7 seqs
prokMSA_id:8616 AF105382 Pseudomonas PsD str. PsD
prokMSA_id:19236 AY035996 Pseudomonas lini 
prokMSA_id:24702 B AJ308304 Pseudomonas fluorescens strain Biotype
prokMSA_id:37605 F AJ308306 Pseudomonas fluorescens strain Biotype
prokMSA_id:62425 AF529090 Pseudomonas sp. clone FTL216 
prokMSA_id:78891 AY177775 Pseudomonas sp. isolate 6i70 
prokMSA_id:78991 AY177777 Pseudomonas sp. isolate 4f57 
2.28.3.13.15 PS.AGARICI_SUBGROUP 9 seqs
2.28.3.13.15.1322 OTU 1 seq
prokMSA_id:27138 AF411855 Pseudomonas sp. 5B 
2.28.3.13.15.41379 OTU 4 seqs
prokMSA_id:8787 Y11150 Pseudomonas graminis str. P 294/08 DSM 11363
prokMSA_id:21829 AY030316 Pseudomonas graminis strain JPL-8 
prokMSA_id:65390 AF511514 Pseudomonas graminis isolate HhSaOsb 
prokMSA_id:65392 AF511513 Pseudomonas graminis isolate SaU5 
2.28.3.13.15.42634 OTU 2 seqs
prokMSA_id:78485 AB088756 Pseudomonas sp. K22 
prokMSA_id:79576 AB088844 Pseudomonas sp. K23 
2.28.3.13.15.42831 OTU 2 seqs
prokMSA_id:8786 D84005 Pseudomonas agarici ATCC 25941
prokMSA_id:73990 D84005 Pseudomonas agarici 
2.28.3.13.99 VARIOUS 198 seqs
2.28.3.13.99.37997 OTU 18 seqs
prokMSA_id:8611 D84010 Pseudomonas caricapapayae ATCC 33615
prokMSA_id:8631 D84007 Pseudomonas amygdali ATCC 33614
prokMSA_id:8648 AB021402 Pseudomonas syringae ATCC 13522
prokMSA_id:8657 Z76657 Pseudomonas chlororaphis LMG 5004
prokMSA_id:8658 AB021382 Pseudomonas meliae MAFF 301463
prokMSA_id:8659 Z76660 Pseudomonas coronafaciens LMG 13190
prokMSA_id:8684 D85993 Pseudomonas putida ATCC 17484
prokMSA_id:16541 AB001448 Pseudomonas syringae pv. phaseolicola 
prokMSA_id:37815 AF332511 Pseudomonas gingeri strain NCPPB 3146 
prokMSA_id:42677 AF326381 Pseudomonas sp. PCP 
prokMSA_id:43799 AB001442 Pseudomonas syringae pv. eriobotryae 
prokMSA_id:45704 AB001447 Pseudomonas syringae pv. myricae 
prokMSA_id:47594 AB038136 Pseudomonas putida strain:P-2
prokMSA_id:63918 AJ492826 Pseudomonas tremae strain CFBP 6111T
prokMSA_id:69781 D84010 Pseudomonas caricapapayae 
prokMSA_id:70197 AJ308301 Pseudomonas chlororaphis isolate ICMP 13613; ATCC 9446
prokMSA_id:72307 D84007 Pseudomonas amygdali 
prokMSA_id:74186 AF094727 Pseudomonas fluorescens strain ATCC 17397 
2.28.3.13.99.38125 OTU 13 seqs
prokMSA_id:8459 X98607 Pseudomonas stutzeri str. JM-300 DSM 10701
prokMSA_id:8486 U26420 Pseudomonas stutzeri str. Zobell ATCC 14405
prokMSA_id:8492 U25431 Pseudomonas stutzeri str. Stanier 220 ATCC 17587
prokMSA_id:8494 U65012 Pseudomonas stutzeri str. Zobell ATCC 14405
prokMSA_id:8588 AF064458 Pseudomonas monteilii str. CFML 90-60 CIP 104883
prokMSA_id:8591 AF135269 Pseudomonas SF1 str. SF1
prokMSA_id:8594 D85991 Pseudomonas putida str. A10L
prokMSA_id:28946 AB029257 Pseudomonas putida 
prokMSA_id:32844 AJ295682 Pseudomonas stutzeri strain IrT-JG-7
prokMSA_id:33976 AF447394 Pseudomonas putida complete 
prokMSA_id:37567 AJ295681 Pseudomonas stutzeri strain IrT-JG-2
prokMSA_id:37877 AF094737 Pseudomonas putida strain ATCC 17390 
prokMSA_id:50368 AJ288149 Pseudomonas stutzeri isolate Bok 10-D-1
2.28.3.13.99.40701 OTU 23 seqs
prokMSA_id:8471 D84014 Pseudomonas fragi IAM 12402
prokMSA_id:8475 AJ006103 Pseudomonas stutzeri ATCC 17685
prokMSA_id:8476 U26262 Pseudomonas stutzeri str. Stanier 221 CCUG 11256
prokMSA_id:8478 AF025349 Pseudomonas BRW1 str. BRW1
prokMSA_id:8479 AF025351 Pseudomonas BRW3 str. BRW3
prokMSA_id:8483 AJ006104 Pseudomonas stutzeri ATCC 17598
prokMSA_id:8484 Y18006 Pseudomonas stutzeri
prokMSA_id:8489 U26414 Pseudomonas stutzeri str. DNSP21 DSM 6082
prokMSA_id:8496 U25432 Pseudomonas stutzeri str. Stanier 222 ATCC 17589
prokMSA_id:19945 AF214645 Nitrogen-fixing MIS 
prokMSA_id:24364 AJ288151 Pseudomonas stutzeri strain DSM 5190T
prokMSA_id:25364 M AJ299216 Pseudomonas mevalonii strain
prokMSA_id:29740 AY030314 Pseudomonas sp. JPL-1 
prokMSA_id:31433 AJ387903 Pseudomonas sp. strain -111
prokMSA_id:38510 AJ288150 Pseudomonas stutzeri isolate Bok 25-30-1
prokMSA_id:48469 AF094748 Pseudomonas stutzeri 
prokMSA_id:53689 AJ308315 Pseudomonas stutzeri isolate ICMP 12561; ATCC 17588
prokMSA_id:55955 AJ312170 Pseudomonas stutzeri strain 24a80
prokMSA_id:56281 AJ410872 Pseudomonas stutzeri strain YPF-41
prokMSA_id:60915 AJ410871 Pseudomonas stutzeri strain API-2-142
prokMSA_id:60921 AJ312169 Pseudomonas stutzeri strain 24a36
prokMSA_id:60922 AJ312171 Pseudomonas stutzeri strain 24a50
prokMSA_id:71825 D84014 Pseudomonas fragi complete 
2.28.3.13.99.40990 OTU 10 seqs
prokMSA_id:8573 L37365 Pseudomonas putida str. F1
prokMSA_id:8576 D37925 Pseudomonas putida str. PB4
prokMSA_id:8590 AF131104 Pseudomonas putida str. MTB5
prokMSA_id:8596 U70977 Pseudomonas putida str. MnB1
prokMSA_id:8602 X86623 unnamed organism
prokMSA_id:19059 AF251336 Pseudomonas sp. SV16 
prokMSA_id:26387 AJ243606 Pseudomonas sp
prokMSA_id:28308 AJ270451 Pseudomonas stutzeri strain 24a13
prokMSA_id:38466 AF378011 Pseudomonas sp. ML2 
prokMSA_id:50755 AF411854 Pseudomonas sp. 5A 
2.28.3.13.99.41730 OTU 41 seqs
prokMSA_id:8717 Z76670 Pseudomonas tolaasii LMG 2342
prokMSA_id:8720 D84028 Pseudomonas tolaasii ATCC 33618
prokMSA_id:8721 AB013254 str. NKB2
prokMSA_id:8723 Z29622 Azospirillum sp. str. AM-53 DSM 1727
prokMSA_id:8726 AF112477 Azospirillum sp
prokMSA_id:8727 AB015570 str. BD5-14
prokMSA_id:8730 AB015251 str. JTB247
prokMSA_id:8773 AB015555 str. BD3-15
prokMSA_id:18648 AF290479 sheep mite Llangefni 15 
prokMSA_id:19748 AF320986 Pseudomonas tolaasii strain NCPPB 1116 
prokMSA_id:21571 AF094750 Pseudomonas tolaasii 
prokMSA_id:32794 AY014801 Pseudomonas sp. NZ007 
prokMSA_id:33806 AF320994 Pseudomonas tolaasii strain NZ027 
prokMSA_id:34018 AF289504 sheep mite Llangefni 4 
prokMSA_id:34487 AF290489 sheep mite Welshpool 13 
prokMSA_id:34665 AF290491 sheep mite Welshpool 59 
prokMSA_id:35009 AF320995 Pseudomonas tolaasii strain NZ032 
prokMSA_id:37361 AF320990 Pseudomonas tolaasii strain NCPPB 2325 
prokMSA_id:37559 AF290490 sheep mite Welshpool 46 
prokMSA_id:37579 G AJ308307 Pseudomonas fluorescens strain Biotype
prokMSA_id:42961 AF255336 Pseudomonas tolaasii 
prokMSA_id:43326 AY014811 Pseudomonas sp. NZ052 
prokMSA_id:44550 AF289505 sheep mite Llangefni 6 
prokMSA_id:50036 AJ252664 Agricultural soil clone SC-I-88 
prokMSA_id:50836 AF320992 Pseudomonas tolaasii strain NCPPB 741 
prokMSA_id:52734 AF405328 Pseudomonas extremorientalis 
prokMSA_id:60448 AY131215 Pseudomonas sp. Fa3 
prokMSA_id:63913 AJ492831 Pseudomonas trivialis strain DSM 14937T
prokMSA_id:63914 AJ492829 Pseudomonas poae strain DSM 14936T
prokMSA_id:67413 AY091528 Pseudomonas salomonii 
prokMSA_id:67535 AF374472 Pseudomonas costantinii 
prokMSA_id:70883 D84028 Pseudomonas tolaasii 
prokMSA_id:72253 AY014800 Pseudomonas sp. NZ006 
prokMSA_id:73574 AY014813 Pseudomonas sp. NZ060 
prokMSA_id:74047 AF320988 Pseudomonas tolaasii strain NCPPB 2192 
prokMSA_id:74239 AF290492 sheep mite Welshpool 4 
prokMSA_id:74265 AY014807 Pseudomonas sp. NZ031 
prokMSA_id:76537 AY118112 Pseudomonas sp. BW11M1 
prokMSA_id:76605 AJ534625 gamma clone JG36-TzT-72
prokMSA_id:77892 AB098591 Pseudomonas sp. TUT1023 
prokMSA_id:81717 AY216460 clone KM94 
2.28.3.13.99.42089 OTU 3 seqs
prokMSA_id:8425 X99540 Pseudomonas anguilliseptica NCIMB 1949
prokMSA_id:8521 X99541 Pseudomonas anguilliseptica str. 1123/5
prokMSA_id:63760 AF439803 Pseudomonas anguilliseptica strain BI complete 
2.28.3.13.99.42275 OTU 16 seqs
prokMSA_id:8633 Z76671 Pseudomonas viridiflava LMG 2352
prokMSA_id:8789 D85999 Pseudomonas putida IFO 3738
prokMSA_id:8793 AJ011504 str. BKME-9
prokMSA_id:21746 AF326383 Pseudomonas sp. ADP 
prokMSA_id:24232 AF205137 Pseudomonas sp. 'FSL R1-057' 
prokMSA_id:35826 AF150701 Elbe River snow isolate Iso2 
prokMSA_id:42527 AF394175 Blackwater bioreactor BW32 
prokMSA_id:56604 AF364097 Pseudomonas viridiflava strain NZCX09 
prokMSA_id:59723 AF538932 Pseudomonas sp. WDL5 
prokMSA_id:60438 AY131223 Pseudomonas sp. Fa4 
prokMSA_id:60439 AY131224 Pseudomonas sp. Fa20 
prokMSA_id:61844 AF529320 gamma clone CLi109 
prokMSA_id:70959 AF094751 Pseudomonas viridiflava 
prokMSA_id:74050 AF511436 Pseudomonas alcaligenes 
prokMSA_id:74827 AY014826 Pseudomonas sp. NZ112 
prokMSA_id:78571 AY152673 Pseudomonas rhizosphaerae complete 
2.28.3.13.99.42281 OTU 69 seqs
prokMSA_id:8605 D84015 Pseudomonas fulva IAM 1529
prokMSA_id:8621 AF095892 Pseudomonas putida ATCC 11250
prokMSA_id:8642 AJ002813 str. S2
prokMSA_id:8689 AF064461 Pseudomonas cedrella str. CFML 96-198
prokMSA_id:8765 AF074384 Pseudomonas gessardii CIP 105469
prokMSA_id:8769 U85868 ACAM 213
prokMSA_id:8770 U85869 Pseudomonas IC038 str. IC038
prokMSA_id:8775 D84025 Pseudomonas synxantha IAM 12356
prokMSA_id:8777 X86626 unnamed organism
prokMSA_id:8778 AF057645 Pseudomonas libaniensis CIP 105460
prokMSA_id:19470 AY014805 Pseudomonas sp. NZ017 
prokMSA_id:19794 AJ295374 Rape rhizosphere cse074 
prokMSA_id:20622 AF388206 Pseudomonas sp. NZ081 
prokMSA_id:21756 AY053484 AT425_EubC3 
prokMSA_id:24808 AF094738 Pseudomonas putida strain ATCC 17472 
prokMSA_id:27387 AF451270 Pseudomonas sp. E102 
prokMSA_id:29039 AF094729 Pseudomonas fluorescens strain ATCC 17556 
prokMSA_id:33184 A AJ308303 Pseudomonas fluorescens strain Biotype
prokMSA_id:36542 AF205136 Pseudomonas sp. 'FSL D1-045' 
prokMSA_id:38915 AY014829 Pseudomonas sp. NZ124 
prokMSA_id:38918 AY048886 Q3-6C19 
prokMSA_id:41990 AF228367 Pseudomonas fluorescens bv. C 
prokMSA_id:46435 AB051701 Pseudomonas sp. LAB-27 
prokMSA_id:46670 AF326356 Pseudomonas sp. G2 
prokMSA_id:48111 AF267911 Pseudomonas synxantha 
prokMSA_id:51775 AY014808 Pseudomonas sp. NZ039 
prokMSA_id:52364 AB051700 Pseudomonas sp. LAB-26 
prokMSA_id:52401 AY014823 Pseudomonas sp. NZ106 
prokMSA_id:52524 AF205135 Pseudomonas sp. 'FSL D1-024' 
prokMSA_id:56231 AF501879 Pseudomonas sp. SMCC B0631 
prokMSA_id:59919 AY133072 gamma clone ccs242 
prokMSA_id:60327 AF534214 clone Phe56 
prokMSA_id:60329 AF534212 clone Phe41 
prokMSA_id:60331 AF534209 clone Phe13 
prokMSA_id:60336 AF534205 clone Phe10 
prokMSA_id:60343 AF534197 clone Glu3 
prokMSA_id:60441 AY131221 Pseudomonas sp. Fa27 
prokMSA_id:60444 AY131219 Pseudomonas sp. Fa24 
prokMSA_id:61816 AF529346 gamma clone CLs104 
prokMSA_id:61845 AF529319 gamma clone CLi21 
prokMSA_id:62342 AB060136 Pseudomonas fulva strain:NRIC 0180T
prokMSA_id:62344 AB060134 Pseudomonas fulva strain:AJ 2131
prokMSA_id:62345 AB060135 Pseudomonas straminea strain:IAM 1587
prokMSA_id:62350 AB060133 Pseudomonas parafulva strain:AJ 2130
prokMSA_id:62351 AB060131 Pseudomonas fulva strain:AJ 2126
prokMSA_id:62352 AB060132 Pseudomonas parafulva strain:AJ 2129T
prokMSA_id:63472 AY121983 Pseudomonas sp. RA12 
prokMSA_id:63912 AJ492830 Pseudomonas fulgida strain DSM 14938T
prokMSA_id:65396 AF511510 Pseudomonas sp. SaU7 
prokMSA_id:66753 AF501878 Pseudomonas sp. SMCC B0628 
prokMSA_id:66755 AF501877 Pseudomonas sp. SMCC B0608 
prokMSA_id:66757 AF500621 Pseudomonas sp. SMCC B0361 
prokMSA_id:69922 AY014821 Pseudomonas sp. NZ103 
prokMSA_id:70213 AY014828 Pseudomonas sp. NZ122 
prokMSA_id:70601 AF388209 Pseudomonas sp. NZ066 
prokMSA_id:71596 D84025 Pseudomonas synxantha complete 
prokMSA_id:72737 AY014824 Pseudomonas sp. NZ108 
prokMSA_id:72883 AF388208 Pseudomonas sp. NZ064 
prokMSA_id:73522 AY014827 Pseudomonas sp. NZ113 
prokMSA_id:73710 AF205138 Pseudomonas sp. 'FSL R1-195' 
prokMSA_id:73740 AY014825 Pseudomonas sp. NZ111 
prokMSA_id:74257 D84015 Pseudomonas fulva complete 
prokMSA_id:76514 AY162141 Pseudomonas sp. BHP7-11 
prokMSA_id:77405 AF456220 Pseudomonas sp. S57-2 
prokMSA_id:79193 AF468451 Pseudomonas sp. Ps 1-2 
prokMSA_id:79231 AF468452 Pseudomonas sp. Ps 9-14 
prokMSA_id:79267 AF468453 Pseudomonas sp. Ps 3-1 
prokMSA_id:79709 AF468391 Arctic sea ice ARK10061 
prokMSA_id:79739 AF468404 Arctic sea ice ARK9971 
2.28.3.13.99.42624 OTU 5 seqs
prokMSA_id:8550 D84006 Pseudomonas alcaligenes IAM 12411
prokMSA_id:8553 Z76653 Pseudomonas alcaligenes LMG 1224
prokMSA_id:18350 AF390747 Pseudomonas alcaligenes isolate LB19 
prokMSA_id:64390 AY120881 Pseudomonas sp. Gu5828 
prokMSA_id:72074 AF094721 Pseudomonas alcaligenes 
2.28.3.15 ENVIRONMENTAL_CLONE_SAR92_GROUP 1 seq
2.28.3.15.13923 OTU 1 seq
prokMSA_id:60652 AF406519 alpha clone AEGEAN_169 
2.28.3.16 MRB.HYDROCARBONOCLASTICUS_GROUP 49 seqs
2.28.3.16.1085 OTU 1 seq
prokMSA_id:80080 AB089804 Marinobacter sp. HB7 
2.28.3.16.11461 OTU 1 seq
prokMSA_id:81942 AY165593 Arctic sea ice clone ARKXV/1-96 
2.28.3.16.11674 OTU 1 seq
prokMSA_id:66917 AJ306784 clone SHA-37
2.28.3.16.11778 OTU 1 seq
prokMSA_id:66955 AF482686 Marinobacter sp. SBS 
2.28.3.16.12557 OTU 1 seq
prokMSA_id:45418 AJ429499 Marinobacter sp. 2sq31 strain 2sq31
2.28.3.16.13908 OTU 1 seq
prokMSA_id:60644 AF406527 gamma clone AEGEAN_133 
2.28.3.16.1738 OTU 1 seq
prokMSA_id:80143 AB089803 Marinobacter sp. HS7 
2.28.3.16.17478 OTU 1 seq
prokMSA_id:24515 AF195410 Hahella chejuensis strain KCTC 2396 
2.28.3.16.18384 OTU 1 seq
prokMSA_id:61967 AJ244728 Marinobacter-like sp. V4.MS.24 
2.28.3.16.20732 OTU 1 seq
prokMSA_id:78569 AY180101 Marinobacter excelentus strain KMM 3809 
2.28.3.16.28452 OTU 2 seqs
prokMSA_id:25426 AJ292528 Marinobacter sp. Trimyema-2 isolate 2
prokMSA_id:73167 AF288157 Marinobacter lutaoensis 
2.28.3.16.28861 OTU 7 seqs
prokMSA_id:8807 AJ000726 Marinobacter aquaeolei str. VT8
prokMSA_id:8815 AB019148 Marinobacter hydrocarbonoclasticus str. 179 ATCC 27132
prokMSA_id:8816 AB021372 Marinobacter hydrocarbonoclasticus str. 179 ATCC 27132
prokMSA_id:8817 Y16735 Marinobacter hydrocarbonoclasticus
prokMSA_id:8818 U61848 Marinobacter CAB str. CAB
prokMSA_id:8821 AB010868 str. HTB148
prokMSA_id:60388 AF513451 Alteromonadaceae LA34A 
2.28.3.16.34367 OTU 17 seqs
prokMSA_id:8809 AF199440 Marinobacter DS40M8 str. DS40M8
prokMSA_id:16390 AF212207 Marinobacter sp. Aplume1.1727a complete 
prokMSA_id:20197 AF359552 Marine ATAM407_2035 
prokMSA_id:22385 AF295032 Marinobacter sp. NCE312 
prokMSA_id:26877 AJ294359 Marinobacter sp. 407-13 strain 407-13
prokMSA_id:31320 AF212209 Marinobacter sp. Asw2.1747a complete 
prokMSA_id:31627 AF212213 Marinobacter sp. Splume3.1825c complete 
prokMSA_id:47395 AF212210 Marinobacter sp. Splume1.1802c complete 
prokMSA_id:48119 AF212211 Marinobacter sp. Splume2.1814c complete 
prokMSA_id:60391 AF513448 Alteromonadaceae LA13 
prokMSA_id:80357 AF468320 clone ARKICE-3 
prokMSA_id:80393 AF468307 clone ARKICE-88 
prokMSA_id:80856 AF468316 clone ARKICE-52 
prokMSA_id:82024 AY165592 Arctic sea ice clone ARKXV/1-140 
prokMSA_id:82027 AY165596 Arctic sea ice clone ARKXV/1-52 
prokMSA_id:82079 AY165595 Arctic sea ice clone ARKXV/1-157 
prokMSA_id:82281 AY165597 Arctic sea ice clone ARKXV/1-34 
2.28.3.16.42900 OTU 3 seqs
prokMSA_id:79688 AF468400 Arctic sea ice ARK10228 
prokMSA_id:79693 AF468286 clone ARKIA-100 
prokMSA_id:79964 AF468403 Arctic sea ice ARK10296 
2.28.3.16.6649 OTU 1 seq
prokMSA_id:8799 U14584 Flectobacillus sp. str. S36-Wgv1
2.28.3.16.6750 OTU 1 seq
prokMSA_id:36221 AJ252619 Agricultural soil clone SC-I-16 
2.28.3.16.7180 OTU 1 seq
prokMSA_id:8806 AB026946 Marinobacter NK-1 str. NK-1
2.28.3.16.7192 OTU 1 seq
prokMSA_id:8811 AB021383 Pseudomonas halophila DSM 3050
2.28.3.16.7203 OTU 1 seq
prokMSA_id:8819 AJ000647 Marinobacter PCOB-2 str. PCOB-2
2.28.3.16.7646 OTU 1 seq
prokMSA_id:20696 AF238495 Marinobacter sp
2.28.3.16.7782 OTU 1 seq
prokMSA_id:59259 AJ439500 Marinobacter sp. 2Asq64 strain 2Asq64
2.28.3.16.8042 OTU 1 seq
prokMSA_id:21327 AF237685 Marinobacter sp
2.28.3.16.9028 OTU 1 seq
prokMSA_id:75064 AJ519788 Marinobacter sp. R2 
2.28.3.16.9081 OTU 1 seq
prokMSA_id:37115 AJ292527 Marinobacter sp. Trimyema-1 isolate 1
2.28.3.17 TCP.ROSEOPERSICINA_GROUP 12 seqs
2.28.3.17.13937 OTU 1 seq
prokMSA_id:30572 X92130 sp. Lake Elmenteita isolate 1E1
2.28.3.17.19838 OTU 1 seq
prokMSA_id:47714 AY077611 Gamma F8 
2.28.3.17.33524 OTU 5 seqs
prokMSA_id:8825 AB010842 str. HTB082
prokMSA_id:21087 AF371859 clone p-261-o5 
prokMSA_id:24038 AF371858 clone p-502-o2 
prokMSA_id:27315 AF290480 sheep mite Llangefni 75 
prokMSA_id:55811 AY093457 clone MB-A2-102 
2.28.3.17.35364 OTU 5 seqs
prokMSA_id:8823 AJ002006 Curacaobacter baltica str. OS 140
prokMSA_id:8826 AB010858 str. HTB010
prokMSA_id:8827 AB010859 str. HTB021
prokMSA_id:8828 AB010860 str. HTB019
prokMSA_id:73653 AJ441082 Rheinheimera baltica strain OSBAC5
2.28.3.18 COLWELLIA_GROUP 53 seqs
2.28.3.18.11542 OTU 1 seq
prokMSA_id:81968 AY194066 Gamma JC2041 
2.28.3.18.11661 OTU 1 seq
prokMSA_id:36824 AJ294748 Thalassomonas viridans strain XOM25T CECT 5083T
2.28.3.18.14966 OTU 1 seq
prokMSA_id:37948 X92127 sp. Lake Bogoria isolate 10B1
2.28.3.18.16060 OTU 1 seq
prokMSA_id:45973 AF052741 Marine KM231 
2.28.3.18.16510 OTU 1 seq
prokMSA_id:76778 AB097610 Alteromonadaceae SN-1009 
2.28.3.18.1700 OTU 1 seq
prokMSA_id:79584 AF505731 Gamma UMB7A 
2.28.3.18.21374 OTU 1 seq
prokMSA_id:79265 AF505723 Gamma UMB3E 
2.28.3.18.21721 OTU 1 seq
prokMSA_id:71444 AB059259 Colwellia sp. PS11-3 
2.28.3.18.35152 OTU 7 seqs
prokMSA_id:81127 AY165566 Antarctic sea ice clone ANTXI/13-90 
prokMSA_id:81289 AY167297 Colwellia sp. ANT9196 
prokMSA_id:81569 AY167295 Colwellia sp. ANT9187 
prokMSA_id:81600 AY165573 Antarctic sea ice clone ANTXI/4_14-31 
prokMSA_id:81615 AY165568 Antarctic sea ice clone ANTXI/4_14-79 
prokMSA_id:81632 AY167329 Colwellia sp. ANT9381 
prokMSA_id:81643 AY167330 Colwellia sp. ANT9407 
2.28.3.18.3853 OTU 1 seq
prokMSA_id:26868 AJ294747 Thalassomonas viridans strain XOM5 CECT 5082
2.28.3.18.41174 OTU 3 seqs
prokMSA_id:80364 AF468310 clone ARKICE-28 
prokMSA_id:80830 AF468284 clone ARKIA-94 
prokMSA_id:82465 AY167268 Colwellia sp. ANT8279 
2.28.3.18.42152 OTU 5 seqs
prokMSA_id:81575 AY167304 Colwellia rossensis strain ANT9246 
prokMSA_id:81641 AY167307 Colwellia rossensis strain ANT9250 
prokMSA_id:81807 AY167311 Colwellia rossensis strain ANT9279 
prokMSA_id:82290 AY167305 Colwellia rossensis strain ANT9247 
prokMSA_id:82309 AY167332 Colwellia rossensis strain ANT9271 
2.28.3.18.42256 OTU 7 seqs
prokMSA_id:8836 AF001375 Colwellia psychroerythrea ATCC 27364
prokMSA_id:8840 U85841 Colwellia psychroerythraea ACAM 604
prokMSA_id:8841 U85842 Colwellia psychroerythraea str. IC064
prokMSA_id:8843 AB011364 Colwellia psychroerythrea ATCC 27364
prokMSA_id:36120 AF173964 Colwellia psychroerythraea 
prokMSA_id:50180 AF396670 Colwellia sp. 34H 
prokMSA_id:61116 AF530145 Colwellia psychroerythraea 
2.28.3.18.42264 OTU 4 seqs
prokMSA_id:35914 AB042502 Halophilic TAG C7 
prokMSA_id:59885 AJ440214 Idiomarina baltica strain OS145
prokMSA_id:60389 AF513450 Idiomarina sp. LA26 
prokMSA_id:73468 AF254111 Slope strain DIII1c 
2.28.3.18.42668 OTU 2 seqs
prokMSA_id:80356 AF468392 Arctic sea ice ARK10102 
prokMSA_id:81146 AY167340 Psychrobacter sp. ARK10133 
2.28.3.18.42708 OTU 2 seqs
prokMSA_id:79209 AF505733 Gamma UMB7D 
prokMSA_id:79530 AF505729 Gamma UMB6D 
2.28.3.18.4773 OTU 1 seq
prokMSA_id:79936 AF468255 clone ARKDMS-64 
2.28.3.18.6599 OTU 1 seq
prokMSA_id:80708 AF468288 clone ARKIA-71 
2.28.3.18.7239 OTU 1 seq
prokMSA_id:8829 AB002630 Colwellia maris str. ABE-1 JCM 10085
2.28.3.18.7258 OTU 1 seq
prokMSA_id:8834 AB013826 str. 62.f
2.28.3.18.7260 OTU 1 seq
prokMSA_id:8838 AF001376 Colwellia -like sp. IC169 str. IC169
2.28.3.18.7298 OTU 1 seq
prokMSA_id:81437 AY165571 Antarctic sea ice clone ANTXI/4_14-151 
2.28.3.18.7305 OTU 1 seq
prokMSA_id:8854 L10950 marine snow associated clone agg53
2.28.3.18.7304 OTU 1 seq
prokMSA_id:8850 U14581 Colwellia rossensis str. S51-Wgv1
2.28.3.18.7333 OTU 1 seq
prokMSA_id:8864 U15115 Pele's Vents clone PVB_54
2.28.3.18.7370 OTU 1 seq
prokMSA_id:44150 X92129 sp. Crater Lake isolate 11C1
2.28.3.18.791 OTU 1 seq
prokMSA_id:79426 AF505728 Gamma UMB6B 
2.28.3.18.8720 OTU 1 seq
prokMSA_id:65942 AF406617 Marine GK-2001 
2.28.3.18.9608 OTU 1 seq
prokMSA_id:82300 AY167269 Colwellia rossensis strain ANT8283 
2.28.3.18.9868 OTU 1 seq
prokMSA_id:81749 AY167298 Colwellia rossensis strain ANT9203 
2.28.3.19 ALTM.MACLEODII_GROUP 105 seqs
2.28.3.19.10102 OTU 1 seq
prokMSA_id:73940 AJ240915 gamma CHAB-XII-8 5' 
2.28.3.19.10415 OTU 1 seq
prokMSA_id:82404 AY165576 Antarctic sea ice clone ANTXI/4_14-62 
2.28.3.19.13868 OTU 1 seq
prokMSA_id:31197 AF359542 Marine ATAM173a_5 
2.28.3.19.21132 OTU 1 seq
prokMSA_id:71399 AF173965 Alteromonas macleodii 
2.28.3.19.21933 OTU 1 seq
prokMSA_id:56430 AB076562 Marine gamma MKT112 
2.28.3.19.25295 OTU 2 seqs
prokMSA_id:21298 AB035555 marine complete strain:GY3
prokMSA_id:38060 AB040465 Alteromonas sp. K 
2.28.3.19.30520 OTU 2 seqs
prokMSA_id:16732 AB035559 marine strain:GY9548
prokMSA_id:29913 AB035558 marine strain:GY9536
2.28.3.19.31764 OTU 2 seqs
prokMSA_id:8890 AB004313 marine 
prokMSA_id:45496 AB040466 Alteromonas sp. D 
2.28.3.19.34006 OTU 3 seqs
prokMSA_id:39858 AJ293820 Arctic seawater R7215 
prokMSA_id:74198 AB049729 Glaciecola sp. HA02 
prokMSA_id:79499 AF505735 Gamma UMB8E 
2.28.3.19.3476 OTU 1 seq
prokMSA_id:35256 AB035557 marine complete strain:GY9501
2.28.3.19.39457 OTU 4 seqs
prokMSA_id:80765 AF468309 clone ARKICE-110 
prokMSA_id:81094 AY165577 Antarctic sea ice clone ANTXI/4_14-132 
prokMSA_id:81840 AY165591 Arctic sea ice clone ARKXV/1-106 
prokMSA_id:82034 AY165594 Arctic sea ice clone ARKXV/1-127 
2.28.3.19.39481 OTU 24 seqs
prokMSA_id:47176 AJ295716 Polar sea R9879 
prokMSA_id:79900 AF468292 clone ARKIA-115 
prokMSA_id:79998 AF468394 Arctic sea ice ARK10128 
prokMSA_id:80204 AF468251 clone ARKDMS-52 
prokMSA_id:80404 AF468395 Arctic sea ice ARK10130 
prokMSA_id:80564 AF468393 Arctic sea ice ARK10108 
prokMSA_id:80755 AF468389 Arctic sea ice ARK10047 
prokMSA_id:81035 AY167303 Glaciecola sp. ANT9230 
prokMSA_id:81075 AY167293 Glaciecola sp. ANT9183b 
prokMSA_id:81097 AY167300 Glaciecola sp. ANT9218 
prokMSA_id:81148 AY165569 Antarctic sea ice clone ANTXI/4_14-97 
prokMSA_id:81210 AY167284 Glaciecola sp. ANT9142 
prokMSA_id:81369 AY167275 Glaciecola sp. ANT9061 
prokMSA_id:81376 AY167288 Glaciecola sp. ANT9166 
prokMSA_id:81511 AY167280 Glaciecola sp. ANT9094 
prokMSA_id:81720 AY167283 Glaciecola sp. ANT9133 
prokMSA_id:81743 AY167290 Glaciecola sp. ANT9175 
prokMSA_id:81756 AY165572 Antarctic sea ice clone ANTXI/4_14-32 
prokMSA_id:81777 AY167334 Glaciecola sp. ANT9081 
prokMSA_id:81795 AY167287 Glaciecola sp. ANT9154 
prokMSA_id:81949 AY167296 Glaciecola punicea strain ANT9189 
prokMSA_id:82048 AY167277 Glaciecola sp. ANT9085 
prokMSA_id:82306 AY167323 Glaciecola sp. ANT9159 
prokMSA_id:82405 AY167274 Glaciecola sp. ANT9055 
2.28.3.19.40214 OTU 41 seqs
prokMSA_id:8877 AF114498 str. SUR ATT
prokMSA_id:8879 AF114500 str. DCM ATT
prokMSA_id:8883 AF114505 str. DCM ATT
prokMSA_id:8884 AF114506 str. 400m ATT
prokMSA_id:8886 AF114508 str. SUR ATT
prokMSA_id:8891 Y18228 Alteromonas macleodii DSM 6062
prokMSA_id:8894 Y18231 Alteromonas macleodii
prokMSA_id:8896 Y18234 Alteromonas macleodii str. CH-516
prokMSA_id:8899 AB010844 str. HTC 34
prokMSA_id:8900 AB015135 Alteromonas sp. str. KE10
prokMSA_id:8901 AB010855 str. HTC036
prokMSA_id:8902 AB010856 str. HTC035
prokMSA_id:8903 AB010857 str. HTC032
prokMSA_id:22311 AB049730 Alteromonas sp. TO01 
prokMSA_id:23327 AJ391192 Alteromonas sp. AS-31 
prokMSA_id:26192 AJ294361 Alteromonas sp. 2c3 strain 2c3
prokMSA_id:26409 AF354598 gamma Arctic95A-15 
prokMSA_id:29334 AJ310692 clone 270
prokMSA_id:33294 AJ310691 clone 318
prokMSA_id:35156 AJ391191 Alteromonas sp. AS-30 
prokMSA_id:44702 AF386742 Alteromonas sp. 4BT 
prokMSA_id:45350 AJ240919 gamma CHAB-VI-3 5' 
prokMSA_id:46469 AJ294360 Alteromonas sp. 407-2 strain 407-2
prokMSA_id:55521 AJ414399 Alteromonas macleodii subsp. fijiensi strain medioatlantica
prokMSA_id:55687 AF513940 Alteromonadaceae clone LAS-B5N 
prokMSA_id:60377 AF513462 Alteromonadaceae PH5 
prokMSA_id:60990 AF529061 Alteromonas marina strain SW-49 
prokMSA_id:60991 AF529060 Alteromonas marina strain SW-47 
prokMSA_id:62005 AJ244758 Alteromonas sp. V4.BE.32 
prokMSA_id:62493 AF513950 Alteromonadaceae clone PH-B21N 
prokMSA_id:62499 AF513941 Alteromonadaceae clone PH-B55N 
prokMSA_id:62501 AF513939 Alteromonadaceae clone LAS-B15N 
prokMSA_id:63591 AB078014 Alteromonas sp. SHY1-1 
prokMSA_id:67709 AB072388 Alteromonas sp. KC98716-13 
prokMSA_id:71090 AF427478 Alteromonas sp. ANSW2-2 
prokMSA_id:71568 AJ319537 Alteromonas macleodii subsp. abyssi strain HYD657
prokMSA_id:71626 AF288360 Alteromonas alvinellae 
prokMSA_id:72274 AJ244756 Alteromonas sp. V4.ME.16 
prokMSA_id:73259 AJ295715 Polar sea R9875 
prokMSA_id:73722 AJ240914 gamma CHAB-IV-19 5' 
prokMSA_id:73913 AF359529 Marine ATAM407_18 
2.28.3.19.4040 OTU 1 seq
prokMSA_id:80428 AF468296 clone ARKIA-34 
2.28.3.19.40537 OTU 2 seqs
prokMSA_id:8892 Y18229 Alteromonas macleodii
prokMSA_id:73896 AJ294362 Alteromonas sp. 253-19 strain 253-19 strain 253-19
2.28.3.19.5694 OTU 1 seq
prokMSA_id:74015 AJ240916 gamma CHAB-V-29 5' 
2.28.3.19.6267 OTU 1 seq
prokMSA_id:42798 AF114503 gamma 400m-ATT-24 complete 
2.28.3.19.6662 OTU 1 seq
prokMSA_id:73507 AJ240917 gamma CHAB-IV-34 5' 
2.28.3.19.7374 OTU 1 seq
prokMSA_id:8872 U85853 Glaciecola punicea str. IC067 ACAM 611
2.28.3.19.7375 OTU 1 seq
prokMSA_id:8873 U85854 Glaciecola pallidula str. IC079 ACAM 615
2.28.3.19.7380 OTU 1 seq
prokMSA_id:8875 AF114496 str. DCM ATT
2.28.3.19.7378 OTU 1 seq
prokMSA_id:8874 AF114495 str. 400m ATT
2.28.3.19.7383 OTU 1 seq
prokMSA_id:8876 AF114497 str. SUR ATT
2.28.3.19.7385 OTU 1 seq
prokMSA_id:8878 AF114499 str. SUR ATT
2.28.3.19.7409 OTU 1 seq
prokMSA_id:8880 AF114501 str. SUR ATT
2.28.3.19.7411 OTU 1 seq
prokMSA_id:8881 AF114502 str. 400m ATT
2.28.3.19.7413 OTU 1 seq
prokMSA_id:8882 AF114504 str. 400m ATT
2.28.3.19.7417 OTU 1 seq
prokMSA_id:8885 AF114507 str. 400m ATT
2.28.3.19.7459 OTU 1 seq
prokMSA_id:8893 Y18230 Alteromonas macleodii
2.28.3.19.7463 OTU 1 seq
prokMSA_id:8895 Y18233 Alteromonas macleodii str. CH-460
2.28.3.19.7466 OTU 1 seq
prokMSA_id:8898 U73724 str. 214.6
2.28.3.19.8330 OTU 1 seq
prokMSA_id:43614 AB040464 Alteromonas sp. S 
2.28.3.19.9017 OTU 1 seq
prokMSA_id:81621 AB086226 Biphenyl-degrading BP-PH 
2.28.3.20 PSEUDOALTEROMONAS_GROUP 268 seqs
2.28.3.20.1 PAL.HALOPLANKTIS_SUBGROUP 21 seqs
2.28.3.20.1.11631 OTU 1 seq
prokMSA_id:36812 AB055794 Pseudoalteromonas sp. Edeep-1 
2.28.3.20.1.12491 OTU 1 seq
prokMSA_id:23171 AF218245 Pseudoalteromonas sp
2.28.3.20.1.15870 OTU 1 seq
prokMSA_id:76654 AY164641 Pseudoalteromonas sp. KJ 2-4 
2.28.3.20.1.21975 OTU 1 seq
prokMSA_id:79319 AF505741 Gamma UMB11F 
2.28.3.20.1.32301 OTU 3 seqs
prokMSA_id:26362 AF235125 Alteromonas sp. KT0232 
prokMSA_id:37967 AY028197 Marine Tw-2 
prokMSA_id:73001 AF173962 Pseudoalteromonas 
2.28.3.20.1.40291 OTU 8 seqs
prokMSA_id:8913 U85855 Pseudoalteromonas sp. str. MB8-11
prokMSA_id:8914 AF022407 Pseudoalteromonas ANG.ro2 str. ANG.strain ro2
prokMSA_id:42828 AF475096 Pseudoalteromonas porphyrae 
prokMSA_id:59526 AJ507251 Pseudoalteromonas sp. KMM 3635 strain KMM 3635
prokMSA_id:61120 AF530143 Pseudoalteromonas sp. MGP-34 
prokMSA_id:72158 AJ295713 Polar sea R7076 
prokMSA_id:79339 AF505745 Gamma UMB20C 
prokMSA_id:79398 AY187028 Pseudoalteromonas sp. MMM18 
2.28.3.20.1.42418 OTU 2 seqs
prokMSA_id:27905 AF366042 Marine gamma BB2AT2 
prokMSA_id:33435 AY028206 Marine BB2AT2 
2.28.3.20.1.8068 OTU 1 seq
prokMSA_id:8921 AF118018 Pseudoalteromonas RE10F/2 str. RE10F/2
2.28.3.20.1.8067 OTU 1 seq
prokMSA_id:8920 AB021704 str. KI89A
2.28.3.20.1.8149 OTU 1 seq
prokMSA_id:8944 X98336 Pseudoalteromonas antarctica str. NF3 CECT 4664
2.28.3.20.1.8152 OTU 1 seq
prokMSA_id:8946 AF045560 Pseudoalteromonas antarctica str. N-1
2.28.3.20.2 PAL.AURANTIA_SUBGROUP 27 seqs
2.28.3.20.2.12138 OTU 1 seq
prokMSA_id:21860 AF269001 SBR2113 
2.28.3.20.2.19277 OTU 1 seq
prokMSA_id:71107 AF284230 Pseudoalteromonas sp. 05 
2.28.3.20.2.2322 OTU 1 seq
prokMSA_id:19424 AF295593 Pseudoalteromonas sp. ACEM-4 
2.28.3.20.2.26429 OTU 2 seqs
prokMSA_id:8952 X82135 Pseudoalteromonas aurantia ATCC 33046
prokMSA_id:8957 X82137 Pseudoalteromonas citrea NCIMB 1889
2.28.3.20.2.40867 OTU 6 seqs
prokMSA_id:8948 U15114 Pele's Vents clone PVB_18
prokMSA_id:8949 AF118019 Pseudoalteromonas RE10F/5 str. RE10F/5
prokMSA_id:8950 AB029824 Pseudoalteromonas S511-1 str. S511-1
prokMSA_id:29044 AF227238 Pseudoalteromonas sp. A28 
prokMSA_id:34196 AB055785 Pseudoalteromonas sp. Bsur-1 
prokMSA_id:46627 AF227237 Pseudoalteromonas sp. A25 
2.28.3.20.2.41189 OTU 5 seqs
prokMSA_id:8954 AF172989 Pseudoalteromonas UL14 str. UL14
prokMSA_id:8955 AF172990 Pseudoalteromonas UL15 str. UL15
prokMSA_id:8956 AF172991 Pseudoalteromonas UL1 str. UL1
prokMSA_id:8964 AF172987 Pseudoalteromonas UL12 str. UL12
prokMSA_id:8965 AF172988 Pseudoalteromonas UL13 str. UL13
2.28.3.20.2.41474 OTU 7 seqs
prokMSA_id:8967 AF144036 Pseudoalteromonas piscicida KMM 636
prokMSA_id:8969 AF081498 Pseudoalteromonas piscicida str. Cura-d
prokMSA_id:8970 AF030381 Pseudoalteromonas Y str. Y
prokMSA_id:23900 AF297662 Pseudoalteromonas piscicida clone NCIMB645 
prokMSA_id:26328 AF297958 Pseudoalteromonas flavipulchra 
prokMSA_id:39091 AF297959 Pseudoalteromonas piscicida 
prokMSA_id:71138 AJ391204 Pseudoalteromonas sp. AS-43 
2.28.3.20.2.8208 OTU 1 seq
prokMSA_id:8963 U80834 Pseudoalteromonas S9 str. S9
2.28.3.20.2.8206 OTU 1 seq
prokMSA_id:8961 X82144 Pseudoalteromonas luteoviolacea NCIMB 1893
2.28.3.20.2.8214 OTU 1 seq
prokMSA_id:8968 AF007286 Pseudoalteromonas peptidysin str. F12-50-A1
2.28.3.20.2.8252 OTU 1 seq
prokMSA_id:8973 Z25522 Pseudoalteromonas tunicata
2.28.3.20.3 PAL.BACTERIOLYTICA 3 seqs
2.28.3.20.3.18885 OTU 1 seq
prokMSA_id:32525 X92128 sp. Lake Nakuru isolate 20N1
2.28.3.20.3.4878 OTU 1 seq
prokMSA_id:50424 AB063324 Marine B-10-31 
2.28.3.20.3.8254 OTU 1 seq
prokMSA_id:8974 D89929 Pseudoalteromonas str. E8R IAM 14595
2.28.3.20.4 MRT.MARINA_SUBGROUP 66 seqs
2.28.3.20.4.15654 OTU 1 seq
prokMSA_id:23606 AB059265 Gamma MTW-13 
2.28.3.20.4.16779 OTU 1 seq
prokMSA_id:32285 AB059263 Gamma PS12-4 
2.28.3.20.4.3709 OTU 1 seq
prokMSA_id:9005 AF003548 Shewanella woodyi str. MS1
2.28.3.20.4.3736 OTU 1 seq
prokMSA_id:9014 X54745 barophile WHB 46 clone 2
2.28.3.20.4.3739 OTU 1 seq
prokMSA_id:9017 AB013839 Shewanella sp. str. 3-8.C
2.28.3.20.4.3738 OTU 1 seq
prokMSA_id:9016 D21221 Vibrio sp. str. DB6101
2.28.3.20.4.3757 OTU 1 seq
prokMSA_id:9027 AF022402 Shewanella ANG.209 str. ANG.strain 209
2.28.3.20.4.3770 OTU 1 seq
prokMSA_id:9034 AB013825 str. 3.b
2.28.3.20.4.3774 OTU 1 seq
prokMSA_id:9036 U85908 Shewanella hanedai str. IC050 ACAM 585
2.28.3.20.4.3775 OTU 1 seq
prokMSA_id:9037 AF187080 str. KMG427
2.28.3.20.4.3891 OTU 1 seq
prokMSA_id:20204 AB059262 Moritella sp. PS10-13 
2.28.3.20.4.4046 OTU 1 seq
prokMSA_id:43120 AB059264 Shewanella sp. MTW-1 
2.28.3.20.4.41550 OTU 18 seqs
prokMSA_id:8975 D21224 Moritella japonica str. DSK1
prokMSA_id:8976 X82142 Moritella marina str. MP-1 NCIMB 1144
prokMSA_id:8977 AJ132226 Moritella viscosa str. NVI 88/478T
prokMSA_id:8978 AB011353 Moritella ODA02
prokMSA_id:8979 AB011354 Moritella HAS1123
prokMSA_id:8981 AB011356 Moritella J28
prokMSA_id:8983 AB011358 Moritella HAR13
prokMSA_id:8984 AB011359 Moritella HAR65
prokMSA_id:8985 AB011360 Moritella SC20
prokMSA_id:8986 AB011361 Moritella SC22
prokMSA_id:8987 AB011362 Moritella SC25
prokMSA_id:8988 AB011363 Moritella SC27
prokMSA_id:8989 AB008797 Moritella DB21MT-5 str. DB21MT-5
prokMSA_id:8995 Y17574 Moritella viscosa str. 478/88
prokMSA_id:24239 AJ252022 Moritella sp. strain 2693
prokMSA_id:33284 AB038033 Moritella marina 
prokMSA_id:70982 AF530133 Moritella sp. MGP-6 
prokMSA_id:72172 AJ252023 Moritella sp. strain 2674
2.28.3.20.4.41573 OTU 16 seqs
prokMSA_id:8998 D63488 Vibrio sp. str. DB172F
prokMSA_id:9021 D63824 Vibrio sp. str. DB172R
prokMSA_id:9023 AF170794 ATCC 33888
prokMSA_id:9026 AF022401 Shewanella ANG.Sq2 str. ANG.strain Sq2
prokMSA_id:9030 AF026460 Shewanella SQ10
prokMSA_id:9031 AF026461 Shewanella SQ26
prokMSA_id:40030 AF249336 Shewanella sp. GIT-33 
prokMSA_id:44629 AB038035 Shewanella sp. SG133 
prokMSA_id:55880 AB081762 Shewanella sp. SM2-1 
prokMSA_id:56028 AB081757 Shewanella sp. IK-1 
prokMSA_id:60929 AB081759 Shewanella sp. 2T11 
prokMSA_id:60933 AB081758 Shewanella sp. HZ17 
prokMSA_id:70185 D63824 Shewanella sp. strain DB172R 
prokMSA_id:71566 D21229 Shewanella sp. strain:DB5501
prokMSA_id:71630 D63488 Shewanella sp. strain DB172F 
prokMSA_id:72743 D21223 Shewanella sp. strain:DB6906
2.28.3.20.4.41727 OTU 19 seqs
prokMSA_id:8994 AB013842 Shewanella sp. str. 7-1.E
prokMSA_id:9001 AB013822 Shewanella sp. str. 16.k
prokMSA_id:9004 AF003549 Shewanella woodyi str. MS32 DSM 12036
prokMSA_id:9007 D21223 Vibrio sp. str. DB6906
prokMSA_id:9008 D21225 Shewanella violacea str. DSS12
prokMSA_id:9012 AB008796 Shewanella benthica str. DB21MT-2
prokMSA_id:9013 AB013838 Shewanella sp. str. 7-10.B
prokMSA_id:9020 X54744 barophile WHB 46 clone 1
prokMSA_id:9022 AB003189 Shewanella benthica str. PT99
prokMSA_id:9025 U85907 Shewanella gelidimarina str. ICP6 ACAM 456
prokMSA_id:9035 X82132 Shewanella hanedai CIP 103207
prokMSA_id:18498 AF420312 Shewanella fidelia strain KMM3582T 
prokMSA_id:46491 AJ271657 Shewanella sp. clone D1Mn
prokMSA_id:47896 AF420313 Shewanella fidelia strain KMM3589 
prokMSA_id:61112 AF530149 Shewanella gelidimarina 
prokMSA_id:69583 AY170369 Shewanella fidelis 
prokMSA_id:69757 AY170366 Shewanella waksmanii 
prokMSA_id:71831 D21225 Shewanella violacea 
prokMSA_id:72541 D21221 Shewanella sp. strain:DB6101
2.28.3.20.4.8341 OTU 1 seq
prokMSA_id:8996 D21222 Vibrio sp. str. DB6705
2.28.3.20.5 SHE.PUTREFACIENS_SUBGROUP 65 seqs
2.28.3.20.5.12579 OTU 1 seq
prokMSA_id:52642 AF295592 Shewanella sp. ACEM-9 
2.28.3.20.5.17295 OTU 1 seq
prokMSA_id:38945 AF132878 Shewanella frigidimarina strain ACAM 557 
2.28.3.20.5.18399 OTU 1 seq
prokMSA_id:24664 AF039054 Shewanella oneidensis strain SP-7 
2.28.3.20.5.18542 OTU 1 seq
prokMSA_id:47581 AF387348 PV-4 
2.28.3.20.5.3782 OTU 1 seq
prokMSA_id:9041 U39398 Shewanella sp. ACAM 122
2.28.3.20.5.3804 OTU 1 seq
prokMSA_id:9061 AF039056 Shewanella oneidensis str. SP-32
2.28.3.20.5.3810 OTU 1 seq
prokMSA_id:9063 U91544 Shewanella alga str. 14.80-A
2.28.3.20.5.3817 OTU 1 seq
prokMSA_id:9067 AF006669 Shewanella alga ACM 4733
2.28.3.20.5.3826 OTU 1 seq
prokMSA_id:9073 AF005253 Shewanella MR-7 str. MR-7
2.28.3.20.5.3833 OTU 1 seq
prokMSA_id:9077 AF145921 Shewanella KMM3299 KMM 3299
2.28.3.20.5.38757 OTU 3 seqs
prokMSA_id:9062 X81622 Shewanella algae str. FeRed
prokMSA_id:9112 AF005249 Shewanella algae ATCC 51192
prokMSA_id:46882 AF319767 Shewanella sp. A6.mk 
2.28.3.20.5.41059 OTU 3 seqs
prokMSA_id:9072 AF005252 Shewanella MR-4 str. MR-4
prokMSA_id:9074 AF005254 Shewanella MR-8 str. MR-8
prokMSA_id:32956 AF387346 Shewanella sp. CL256/73 
2.28.3.20.5.41086 OTU 23 seqs
prokMSA_id:9057 X82133 Shewanella putrefaciens str. B.W. Hammer 95 ATCC 8071
prokMSA_id:9060 AF039055 Shewanella oneidensis str. SP-22
prokMSA_id:9069 U91549 Shewanella putrefaciens str. A6
prokMSA_id:9070 U91552 Shewanella putrefaciens str. F137
prokMSA_id:9075 AJ000215 Shewanella baltica str. OS155
prokMSA_id:9079 AJ006084 Shewanella massilia
prokMSA_id:9094 X81623 Shewanella putrefaciens LMG 2268
prokMSA_id:9097 X81621 Shewanella algae str. BrY
prokMSA_id:9098 U91550 Shewanella putrefaciens str. A31
prokMSA_id:9099 AF136269 Shewanella putrefaciens str. CN-32 SMCC 576W
prokMSA_id:9100 AJ000213 Shewanella putrefaciens
prokMSA_id:9105 X95233 clone Aspo5
prokMSA_id:9106 U91551 Shewanella putrefaciens NCIMB 12577
prokMSA_id:9108 AF005255 Shewanella putrefaciens str. MR-30
prokMSA_id:9110 AF140017 Shewanella ML-S3 str. ML-S3
prokMSA_id:9111 AF140016 Shewanella ML-S2 str. ML-S2
prokMSA_id:33048 AB039738 Shewanella sp. SIC1 
prokMSA_id:33931 AF387347 Shewanella oneidensis 
prokMSA_id:37367 AF387349 Shewanella sp. 184 
prokMSA_id:70300 AF170300 Shewanella putrefaciens IR-1 complete 
prokMSA_id:70682 X81623 S.putrefaciens 
prokMSA_id:70808 AB057660 Shewanella putrefaciens 
prokMSA_id:81492 AY167276 Shewanella sp. ANT9071 
2.28.3.20.5.41346 OTU 2 seqs
prokMSA_id:28400 AF005250 Shewanella alga 
prokMSA_id:72739 X81621 S.alga Bry
2.28.3.20.5.42034 OTU 3 seqs
prokMSA_id:35898 AJ295714 Polar sea R7216 
prokMSA_id:80135 AF468258 clone ARKDMS-30 
prokMSA_id:80569 AF468298 clone ARKIA-82 
2.28.3.20.5.42082 OTU 6 seqs
prokMSA_id:9042 U91546 Shewanella algae str. OK-1 IAM 14159
prokMSA_id:9064 U91545 Shewanella alga str. 43940
prokMSA_id:9065 U91547 Shewanella alga str. T# 8
prokMSA_id:9066 U91548 Shewanella alga str. 68872
prokMSA_id:9071 U91553 Shewanella putrefaciens NCTC 10695
prokMSA_id:71500 AF513471 Alteromonadaceae PH39 
2.28.3.20.5.42498 OTU 10 seqs
prokMSA_id:9113 AF005251 Shewanella oneidensis str. MR-1
prokMSA_id:55466 AE015723 Shewanella oneidensis MR-1 section 272 of 457 of the complet
prokMSA_id:57774 AE015882 Shewanella oneidensis MR-1 section 431 of 457 of the complet
prokMSA_id:57775 AE015906 Shewanella oneidensis MR-1 section 455 of 457 of the complet
prokMSA_id:57777 AE015881 Shewanella oneidensis MR-1 section 430 of 457 of the complet
prokMSA_id:57778 AE015794 Shewanella oneidensis MR-1 section 343 of 457 of the complet
prokMSA_id:57779 AE015853 Shewanella oneidensis MR-1 section 402 of 457 of the complet
prokMSA_id:57780 AE015475 Shewanella oneidensis MR-1 section 24 of 457 of the complete
prokMSA_id:57781 AE015470 Shewanella oneidensis MR-1 section 19 of 457 of the complete
prokMSA_id:57784 AE015455 Shewanella oneidensis MR-1 section 4 of 457 of the complete 
2.28.3.20.5.42870 OTU 2 seqs
prokMSA_id:37718 AB038028 Vibrio sp. OS53 
prokMSA_id:54246 AF173966 Shewanella baltica 
2.28.3.20.5.4377 OTU 1 seq
prokMSA_id:72648 AJ240911 gamma CHAB-I-7 5' 
2.28.3.20.5.4794 OTU 1 seq
prokMSA_id:79941 AY190533 Shewanella gaetbuli 
2.28.3.20.5.6447 OTU 1 seq
prokMSA_id:19933 AJ288153 Shewanella sp. isolate SK-3-30-1
2.28.3.20.99 VARIOUS 86 seqs
2.28.3.20.99.40283 OTU 86 seqs
prokMSA_id:8905 X82146 Pseudoalteromonas nigrifaciens NCIMB 8614
prokMSA_id:8907 AF038846 Pseudoalteromonas gracilis str. B9
prokMSA_id:8908 X82136 Pseudoalteromonas carrageenovora IAM 12662
prokMSA_id:8909 AB019946 Pseudoalteromonas sp. str. FU0605
prokMSA_id:8910 AF069667 str. H120
prokMSA_id:8912 X82134 Pseudoalteromonas atlantica IAM 12927
prokMSA_id:8915 AF069665 str. H7
prokMSA_id:8916 AF069666 str. 12-13
prokMSA_id:8918 X82139 Pseudoalteromonas haloplanktis subsp. tetraodonis str. GFC I
prokMSA_id:8919 AB019947 Pseudoalteromonas sp. str. AR0307
prokMSA_id:8925 AF082562 Alteromonas elyakovii str. 40MC KMM 162
prokMSA_id:8926 U85856 Pseudoalteromonas sp. str. IC006
prokMSA_id:8927 U85857 Pseudoalteromonas sp. str. MB6-03
prokMSA_id:8928 U85858 Pseudoalteromonas sp. str. MB8-02
prokMSA_id:8929 U85859 Pseudoalteromonas sp. str. IC013
prokMSA_id:8930 U85860 Pseudoalteromonas sp. str. MB6-05
prokMSA_id:8931 U85861 Pseudoalteromonas sp. str. SW08
prokMSA_id:8932 AF116188 Pseudoalteromonas elyakovii str. O22
prokMSA_id:8934 AF155038 Pseudoalteromonas ER72M2
prokMSA_id:8945 AF082563 Alteromonas fuliginea KMM 216
prokMSA_id:8947 AF082564 Alteromonas distincta KMM 638
prokMSA_id:8971 X82215 Pseudoalteromonas piscicida ATCC 15057
prokMSA_id:8972 X82147 Pseudoalteromonas rubra ATCC 29570
prokMSA_id:16478 AF456337 Pseudoalteromonas sp. LT13 complete 
prokMSA_id:17585 AB000389 Pseudoalteromonas elyakovii 
prokMSA_id:17633 AF419348 Pseudoalteromonas sp. PF30-23 
prokMSA_id:18568 AF295035 Pseudoalteromonas sp. P-1P41 
prokMSA_id:18661 AF173963 Pseudoalteromonas atlantica 
prokMSA_id:19398 AF354597 gamma Arctic96B-17 
prokMSA_id:20215 AJ391202 Pseudoalteromonas sp. AS-41 
prokMSA_id:20578 X86466 Pseudoalteromonas sp. JLN-U1 strain
prokMSA_id:21879 AY040230 Pseudoalteromonas sp. KMM 520 
prokMSA_id:22902 AF043742 Alteromonas distincta 
prokMSA_id:23058 AF295034 Pseudoalteromonas sp. EH-2-1 
prokMSA_id:23413 AF280818 Pseudoalteromonas sp. DC1 complete 
prokMSA_id:25530 AF218246 Pseudoalteromonas sp
prokMSA_id:30396 AY028200 Marine Tw-5 
prokMSA_id:31455 AF316890 Pseudoalteromonas ruthenica strain KMM290 
prokMSA_id:31520 AF214730 Pseudoalteromonas haloplanktis subsp. tetraodonis strain IAM
prokMSA_id:32584 AB038036 Pseudoalteromonas sp. SUR560 
prokMSA_id:33697 AF443784 Pseudoalteromonas sp. 22b 
prokMSA_id:35558 AJ314843 Pseudoalteromonas sp. TE1-1 strain TE1-1
prokMSA_id:36441 AY028199 Marine Tw-4 
prokMSA_id:37299 AY028202 Marine Tw-7 
prokMSA_id:37455 AF316142 Pseudoalteromonas issachenkonii strain KMM 3558 
prokMSA_id:37660 AF132858 Pseudoalteromonas sp. 2b 
prokMSA_id:37970 AB016268 Alteromonas sp. strain NIBH P3M26 complete 
prokMSA_id:39843 AF354601 gamma Arctic96AD-16 
prokMSA_id:39984 AF214729 Pseudoalteromonas haloplanktis subsp. tetraodonis strain KMM
prokMSA_id:40223 AF316891 Pseudoalteromonas ruthenica strain KMM300 
prokMSA_id:40549 AF237977 Alteromonas sp. MS23 
prokMSA_id:40554 AF300975 C16S 
prokMSA_id:42494 AJ314844 Pseudoalteromonas sp. SE1-2ox strain SE1-2ox
prokMSA_id:43095 AY028205 Marine Tw-10 
prokMSA_id:43190 AF293975 x3 
prokMSA_id:43301 AJ391189 Pseudoalteromonas sp. AS-28 
prokMSA_id:43347 AB042419 Vestimentiferan symbiont TW-4 
prokMSA_id:45332 X86462 Pseudoalteromonas sp. JLN-A013 strain
prokMSA_id:46309 AY040229 Pseudoalteromonas sp. KMM 3548 
prokMSA_id:46753 AJ417594 Pseudoalteromonas agarovorans strain KMM 255
prokMSA_id:50106 AB051165 Pseudoalteromonas sp. KM-Y92-001 
prokMSA_id:50422 AF235119 Alteromonas sp. KT0903 
prokMSA_id:51268 AJ391188 Pseudoalteromonas sp. AS-27 
prokMSA_id:51317 AB049728 Pseudoalteromonas atlantica 
prokMSA_id:52182 AB016267 Alteromonas sp. strain NIBH P3M26 complete 
prokMSA_id:52453 AJ314842 Pseudoalteromonas sp. TE2-2 strain TE2-2
prokMSA_id:54098 AF200216 Psychrophilic marine PS39 complete and -23S intergenic space
prokMSA_id:54633 AF200214 Psychrophilic marine PS10 complete and -23S intergenic space
prokMSA_id:54983 AF200215 Psychrophilic sea water PS16 complete and -23S intergenic sp
prokMSA_id:60988 AF529062 Pseudoalteromonas citrea strain CIP 105339 
prokMSA_id:61131 AF530129 Pseudoalteromonas sp. MGP-2 
prokMSA_id:67502 AY092074 Pseudoalteromonas sp. 39 strain 39 
prokMSA_id:70360 AF254110 Abyssal strain AIII3* 
prokMSA_id:71344 AF359543 Marine ATAM173a_36 
prokMSA_id:71431 AJ244748 Pseudoalteromonas sp. V4.BE.07 
prokMSA_id:71998 AJ295712 Polar sea R7852 
prokMSA_id:73410 AB055791 Pseudoalteromonas sp. Bdeep-1 
prokMSA_id:73474 AB055797 Pseudoalteromonas sp. Ideep-1 
prokMSA_id:73595 AJ244732 Pseudoalteromonas sp. V4.BE.18 
prokMSA_id:75690 AJ519789 Pseudoalteromonas sp. AC-205 
prokMSA_id:77092 AJ519790 Pseudoalteromonas sp. AC-144 
prokMSA_id:77391 AY170899 Psychrophilic marine WP-1 
prokMSA_id:79264 AF505740 Gamma UMB10F 
prokMSA_id:80048 AB100883 Pseudoalteromonas atlantica 
prokMSA_id:81950 AY167333 Pseudoalteromonas sp. ANT9388 
prokMSA_id:82342 AY167328 Pseudoalteromonas sp. ANT9377 
2.28.3.21 PSM.ANTARC_GROUP 19 seqs
2.28.3.21.1113 OTU 1 seq
prokMSA_id:80094 AF468249 clone ARKDMS-45 
2.28.3.21.14464 OTU 1 seq
prokMSA_id:23426 AB059266 Psychromonas sp. NTW-2 
2.28.3.21.14779 OTU 1 seq
prokMSA_id:39185 AF419349 Psychromonas sp. Ant5-5 
2.28.3.21.40774 OTU 4 seqs
prokMSA_id:38990 AF374385 Psychromonas arctica complete 
prokMSA_id:47163 AB038034 Marine psychrotrophic MK242 
prokMSA_id:73094 AJ308372 Marine psychrotrophic Mst37 strain Mst37
prokMSA_id:73561 AF235109 Alteromonas sp. KT1116 
2.28.3.21.40908 OTU 7 seqs
prokMSA_id:9115 U14582 str. 90-Pgv1
prokMSA_id:9117 U85849 Psychromonas IC004 str. IC004
prokMSA_id:9120 U73722 str. 174
prokMSA_id:21481 AB052160 Psychromonas kaikoae strain:JT7304
prokMSA_id:25724 AJ416756 Psychromonas profunda 
prokMSA_id:61119 AF530142 Psychromonas sp. MGP-29/AN1 
prokMSA_id:71948 AF235108 Alteromonas sp. KT1114 
2.28.3.21.42862 OTU 3 seqs
prokMSA_id:79713 AF468290 clone ARKIA-79 
prokMSA_id:81340 AY167326 Psychromonas sp. ANT9265 
prokMSA_id:81844 AY167312 Psychromonas sp. ANT9282a 
2.28.3.21.4639 OTU 1 seq
prokMSA_id:9122 U91588 str. CNPT3
2.28.3.21.5767 OTU 1 seq
prokMSA_id:81267 AY167306 Psychromonas sp. ANT9248 
2.28.3.22 FRM.BALEARICA_GROUP 2 seqs
2.28.3.22.33292 OTU 2 seqs
prokMSA_id:9123 X93021 Ferrimonas balearica str. PAT DSM 9799
prokMSA_id:75149 AY158002 Ferrimonas balearica 
2.28.3.23 VIBRIO_GROUP 175 seqs
2.28.3.23.1 PHOTOBACTERIUM_SUBGROUP 31 seqs
2.28.3.23.1.1 V.HOLLISAE_SUBGROUP 4 seqs
2.28.3.23.1.1.4641 OTU 1 seq
prokMSA_id:9126 X74707 Vibrio hollisae CIP 101886
2.28.3.23.1.1.4642 OTU 1 seq
prokMSA_id:9129 Z19105 symbiont of Melanocetus johnsoni
2.28.3.23.1.1.4654 OTU 1 seq
prokMSA_id:9130 AF118021 Vibrio RE35F/12 str. RE35F/12
2.28.3.23.1.1.4655 OTU 1 seq
prokMSA_id:9131 Z19106 symbiont of Cryptosaras couesi
2.28.3.23.1.2 SAV.COSTICOLA_SUBGROUP 4 seqs
2.28.3.23.1.2.32366 OTU 2 seqs
prokMSA_id:9136 X95527 Salinivibrio costicola NCIMB 701
prokMSA_id:9139 X95529 Salinivibrio costicola subsp. pathovar str. E-367
2.28.3.23.1.2.4670 OTU 1 seq
prokMSA_id:9142 AF057016 Salinivibrio vallismortis DSM 8285
2.28.3.23.1.2.4669 OTU 1 seq
prokMSA_id:9140 X95532 Salinivibrio costicola subsp. pathovar str. H-178
2.28.3.23.1.3 PHB.DAMSELA_SUBGROUP 8 seqs
2.28.3.23.1.3.33032 OTU 8 seqs
prokMSA_id:9143 X78105 Photobacterium damsela subsp. piscicida NCIMB 2058
prokMSA_id:9144 X78106 Photobacterium damsela str. wild isolate
prokMSA_id:9145 Y18496 Photobacterium damselae subsp. Piscicida str. Kre4
prokMSA_id:9147 X74700 Photobacterium damsela subsp. damsela CIP 102761
prokMSA_id:9148 AB026844 Photobacterium damselae subsp. piscicida str. KP9038
prokMSA_id:9149 D25308 Photobacterium histaminum str. C-8
prokMSA_id:20588 AB032015 Photobacterium damselae subsp. damselae 
prokMSA_id:41265 AB032014 Photobacterium histaminum 
2.28.3.23.1.4 PHB.LEIOGNATHI_SUBGROUP 2 seqs
2.28.3.23.1.4.33393 OTU 2 seqs
prokMSA_id:9151 X74686 Photobacterium leiognathi str. L1 CIP 66.5
prokMSA_id:9154 D25309 Photobacterium leiognathi str. L1 ATCC 25521
2.28.3.23.1.5 PHB.ANGUSTUM_SUBGROUP 3 seqs
2.28.3.23.1.5.42523 OTU 3 seqs
prokMSA_id:9157 D25307 Photobacterium angustum ATCC 25915
prokMSA_id:22086 AB016271 Vibrio sp. strain NIBH P2K5 complete 
prokMSA_id:38706 AB038031 Photobacterium sp. HAR23 
2.28.3.23.1.6 PHB.PROFUNDUM_SUBGROUP 6 seqs
2.28.3.23.1.6.33862 OTU 5 seqs
prokMSA_id:9159 D21226 Photobacterium profundum str. DSJ4
prokMSA_id:9160 AB003191 Photobacterium profundum str. SS9
prokMSA_id:9161 AB016982 str. MBIC3157
prokMSA_id:71373 AB055793 Hyphomicrobium sp. Ddeep-1 
prokMSA_id:72659 D21226 Photobacterium sp. 16 
2.28.3.23.1.6.8617 OTU 1 seq
prokMSA_id:36478 AB059261 Photobacterium sp. PS11-6 
2.28.3.23.1.7 PHB.PHOSPHOREUM_SUBGROUP 4 seqs
2.28.3.23.1.7.32777 OTU 4 seqs
prokMSA_id:9163 AB000278 Photobacterium iliopiscarium str. PS1 ATCC 51760
prokMSA_id:9165 Z19107 Photobacterium phosphoreum str. Og61
prokMSA_id:9167 X74687 Photobacterium phosphoreum ATCC 11040
prokMSA_id:9168 D25310 Photobacterium phosphoreum ATCC 11040
2.28.3.23.2 V.ORIENTALIS_SUBGROUP 3 seqs
2.28.3.23.2.19498 OTU 1 seq
prokMSA_id:63324 AF523891 clone RCP2-22 
2.28.3.23.2.4714 OTU 1 seq
prokMSA_id:9171 Z21731 Vibrio orientalis str. 716 ATCC 33933
2.28.3.23.2.4712 OTU 1 seq
prokMSA_id:9170 X74719 Vibrio orientalis str. 717 CIP 102891
2.28.3.23.3 VIBRIO_SUBGROUP 24 seqs
2.28.3.23.3.1 V.FURNISSII_SUBGROUP 6 seqs
2.28.3.23.3.1.11868 OTU 1 seq
prokMSA_id:60374 AF513465 Vibrio sp. PH19 
2.28.3.23.3.1.17996 OTU 1 seq
prokMSA_id:70306 AJ316194 Vibrio sp. LMG 19999 strain LMG 19999
2.28.3.23.3.1.42607 OTU 2 seqs
prokMSA_id:9173 X74703 Vibrio fluvialis str. VL 5125 NCIMB 2249
prokMSA_id:9178 X74704 Vibrio furnissii CIP 102972
2.28.3.23.3.1.4720 OTU 1 seq
prokMSA_id:9175 X76335 Vibrio fluvialis str. VL 5125 NCTC 11327
2.28.3.23.3.1.4721 OTU 1 seq
prokMSA_id:9176 X76336 Vibrio furnissii ATCC 35016
2.28.3.23.3.3 V.SALMONICIDA_SUBGROUP 1 seq
2.28.3.23.3.3.2815 OTU 1 seq
prokMSA_id:65248 AJ278426 Vibrio sp. Torgnes 1 
2.28.3.23.3.4 V.FISCHERI_SUBGROUP 1 seq
2.28.3.23.3.4.1819 OTU 1 seq
prokMSA_id:80175 AF468261 clone ARKDMS-58 
2.28.3.23.3.5 V.PROTEOLYTICUS_SUBGROUP 4 seqs
2.28.3.23.3.5.4758 OTU 1 seq
prokMSA_id:9197 AF199438 Vibrio DS40M5 str. DS40M5
2.28.3.23.3.5.4756 OTU 1 seq
prokMSA_id:9196 X74723 Vibrio proteolyticus str. 262 CIP 102892
2.28.3.23.3.5.5494 OTU 1 seq
prokMSA_id:9201 X74717 Vibrio nigripulchritudo CIP 103195
2.28.3.23.3.5.7130 OTU 1 seq
prokMSA_id:82011 AY217772 Vibrio sp. BLI-41 
2.28.3.23.3.6 V.HARVEYI_SUBGROUP 12 seqs
2.28.3.23.3.6.16118 OTU 1 seq
prokMSA_id:68895 AJ421444 Vibrio penaeicida strain DSM 14398T
2.28.3.23.3.6.16570 OTU 1 seq
prokMSA_id:70114 AJ316181 Vibrio sp. R-15052 strain R-15052
2.28.3.23.3.6.20840 OTU 1 seq
prokMSA_id:24993 AF249335 Vibrio sp. GIT-14 
2.28.3.23.3.6.21106 OTU 1 seq
prokMSA_id:70729 AF284226 Vibrio sp. 05 
2.28.3.23.3.6.21775 OTU 1 seq
prokMSA_id:71462 AF284229 Vibrio sp. 01 
2.28.3.23.3.6.33938 OTU 4 seqs
prokMSA_id:9208 AB000390 Vibrio halioticoli str. A431 IAM 14596
prokMSA_id:9209 AB000391 Vibrio halioticoli IAM 14597
prokMSA_id:9210 AB000392 Vibrio halioticoli IAM 14598
prokMSA_id:19456 AF218244 Vibrio sp
2.28.3.23.3.6.42012 OTU 2 seqs
prokMSA_id:21984 AJ310648 Vibrio agarivorans strain 351A CECT 5084
prokMSA_id:32562 AJ310647 Vibrio agarivorans strain 289T CECT 5085T
2.28.3.23.3.6.5516 OTU 1 seq
prokMSA_id:9213 X56580 Vibrio parahaemolyticus str. 113 ATCC 17802
2.28.3.23.4 V.MEDITERRANEI_SUBGROUP 6 seqs
2.28.3.23.4.10232 OTU 1 seq
prokMSA_id:66767 AJ440005 Vibrio corallilyticus strain LMG 20984
2.28.3.23.4.5566 OTU 1 seq
prokMSA_id:9245 Z19085 symbiont of Photoblepharon palpebratus
2.28.3.23.4.5564 OTU 1 seq
prokMSA_id:9244 Z19079 symbiont of Photoblepharon palpebratus
2.28.3.23.4.5567 OTU 1 seq
prokMSA_id:9246 Z19081 symbiont of Anomalops katoptron
2.28.3.23.4.5571 OTU 1 seq
prokMSA_id:9249 Z19003 symbiont of Kryptophanaron alfredi
2.28.3.23.4.5588 OTU 1 seq
prokMSA_id:9250 Z19080 symbiont of Photoblepharon steinetzi
2.28.3.23.5 V.SPLENDIDUS_SUBGROUP 36 seqs
2.28.3.23.5.39958 OTU 12 seqs
prokMSA_id:40343 AB055796 Vibrio sp. Hdeep-1 
prokMSA_id:42870 AF293974 4c 
prokMSA_id:47083 AY046955 Vibrio splendidus strain B17 
prokMSA_id:56555 AJ515218 Vibrio splendidus strain TNEMF6
prokMSA_id:69386 AJ515228 Vibrio splendidus strain VS6turb
prokMSA_id:69396 AJ515220 Vibrio splendidus strain LMG 10952
prokMSA_id:70080 AJ490157 Vibrio chagasii strain LMG 13237
prokMSA_id:71509 AJ316199 Vibrio sp. R-3712 strain R-3712
prokMSA_id:71896 AJ316193 Vibrio sp. LMG 20539 strain LMG 20539
prokMSA_id:71902 AJ391203 Vibrio sp. AS-42 
prokMSA_id:73863 AB055792 Vibrio sp. Cdeep-1 
prokMSA_id:74459 AJ515219 Vibrio splendidus strain TNNIII7
2.28.3.23.5.40180 OTU 13 seqs
prokMSA_id:26716 AF242271 Vibrio sp. Da2 
prokMSA_id:46227 AF242272 Vibrio sp. Da4 
prokMSA_id:46685 AF388391 Vibrio sp. 3d clone 3d2 
prokMSA_id:52051 AF388393 Vibrio sp. 3d clone 3d7 
prokMSA_id:54302 AF388394 Vibrio sp. 3d clone 3d8 
prokMSA_id:55282 a AJ515225 Vibrio splendidus strain A053 clone
prokMSA_id:56212 AJ515224 Vibrio splendidus strain PMV18
prokMSA_id:67338 AF388392 Vibrio sp. 3d clone 3d4 
prokMSA_id:72056 AF456339 Vibrio sp. PMV18 complete 
prokMSA_id:73914 AJ515227 Vibrio splendidus strain VC1
prokMSA_id:74026 a AJ515222 Vibrio splendidus strain A515 clone
prokMSA_id:74614 AJ515221 Vibrio splendidus strain LT06
prokMSA_id:78737 AY129277 Vibrio splendidus strain LP1 
2.28.3.23.5.41635 OTU 7 seqs
prokMSA_id:26431 AY035895 Vibrio sp. ED4 
prokMSA_id:31562 AF242273 Vibrio sp. Sr3 
prokMSA_id:43627 AB038026 Vibrio sp. OC25 
prokMSA_id:49860 AF242274 Vibrio sp. Sk1 
prokMSA_id:69668 a AJ515229 Vibrio splendidus strain LMG 4042 clone
prokMSA_id:69712 b AJ515230 Vibrio splendidus strain LMG 4042 clone
prokMSA_id:72001 b AJ515223 Vibrio splendidus strain A515 clone
2.28.3.23.5.42809 OTU 2 seqs
prokMSA_id:9279 Y08430 Vibrio tapetis str. B1090 CECT 4600
prokMSA_id:78597 AY129278 Vibrio tapetis strain LP2 
2.28.3.23.5.5606 OTU 1 seq
prokMSA_id:9268 Z31657 Vibrio splendidus str. SCB8
2.28.3.23.5.5645 OTU 1 seq
prokMSA_id:9282 AB013297 Vibrio rumoiensis str. S-1
2.28.3.23.6 V.PECTENICIDA_SUBGROUP 1 seq
2.28.3.23.6.5646 OTU 1 seq
prokMSA_id:9283 Y13830 Vibrio pectenicida str. A365 CIP 105190
2.28.3.23.9 V.CHOLERAE_SUBGROUP 5 seqs
2.28.3.23.9.42857 OTU 2 seqs
prokMSA_id:9300 X74726 Vibrio vulnificus CIP 75.04
prokMSA_id:9311 X76333 Vibrio vulnificus ATCC 27562
2.28.3.23.9.5661 OTU 1 seq
prokMSA_id:9292 X74715 Vibrio navarrensis CIP 103381
2.28.3.23.9.5665 OTU 1 seq
prokMSA_id:9295 X76337 Vibrio cholerae CECT 514
2.28.3.23.9.6369 OTU 1 seq
prokMSA_id:9306 X74713 Vibrio mimicus CIP 101888
2.28.3.23.10 V.DIAZOTROPHICUS_SUBGROUP 6 seqs
2.28.3.23.10.16848 OTU 1 seq
prokMSA_id:47306 AF462458 Vibrio ruber 
2.28.3.23.10.6384 OTU 1 seq
prokMSA_id:9319 AF124055 Vibrio aerogenes str. FG1 ATCC 700797
2.28.3.23.10.6382 OTU 1 seq
prokMSA_id:9313 X74698 Vibrio cincinnatiensis ATCC 35912
2.28.3.23.10.6383 OTU 1 seq
prokMSA_id:9315 X74701 Vibrio diazotrophicus str. NS CIP 103191
2.28.3.23.10.6388 OTU 1 seq
prokMSA_id:9321 X74711 Vibrio metschnikovii str. MV 2484 NCTC 11170
2.28.3.23.10.6389 OTU 1 seq
prokMSA_id:9322 X74712 Vibrio metschnikovii CIP 69.14
2.28.3.23.11 LSN.ANGUILLARUM_SUBGROUP 2 seqs
2.28.3.23.11.6398 OTU 1 seq
prokMSA_id:9345 X16895 Listonella anguillarum str. C510 ATCC 19264
2.28.3.23.11.7449 OTU 1 seq
prokMSA_id:74258 AY069971 Listonella anguillarum serovar O2a 
2.28.3.23.99 VARIOUS 61 seqs
2.28.3.23.99.31803 OTU 2 seqs
prokMSA_id:38009 AJ296157 marine PP-145.98 
prokMSA_id:72904 AJ316171 Vibrio sp. LMG 20536 strain LMG 20536
2.28.3.23.99.37980 OTU 7 seqs
prokMSA_id:17434 AB038029 Vibrio sp. OM02 
prokMSA_id:23581 AJ310687 clone 249
prokMSA_id:25142 AJ310690 clone 272
prokMSA_id:28001 AJ310688 clone 253
prokMSA_id:38260 AJ310689 clone 247
prokMSA_id:39199 AJ310686 clone 334
prokMSA_id:72857 AJ316202 Vibrio sp. LMG 20547 strain LMG 20547
2.28.3.23.99.42741 OTU 52 seqs
prokMSA_id:9205 X74692 Vibrio campbellii str. 40 CIP 75.01
prokMSA_id:9207 AF094701 Vibrio Lu1 str. Lu1
prokMSA_id:9214 X74693 Vibrio harveyi ATCC 35084
prokMSA_id:9215 AF134581 Vibrio carchariae
prokMSA_id:9216 AF094702 Vibrio Lu8 str. Lu8
prokMSA_id:9219 X56575 Vibrio campbellii str. 40 ATCC 25920
prokMSA_id:9223 X74691 Vibrio alginolyticus CIP 70.65
prokMSA_id:9226 X56576 Vibrio alginolyticus str. XII-53 ATCC 17749
prokMSA_id:9227 X74721 Vibrio parahaemolyticus CIP 73.30
prokMSA_id:9229 AF064637 Vibrio NAP-4 str. NAP-4
prokMSA_id:9230 X74714 Vibrio natriegens str. 111 CIP 103193
prokMSA_id:9233 X99761 Vibrio mytili
prokMSA_id:9234 X74690 Vibrio alginolyticus str. XII-53 CIP 75.03
prokMSA_id:9235 X56578 Vibrio harveyi ATCC 14126
prokMSA_id:9236 X56578 Vibrio harveyi ATCC 14126
prokMSA_id:9238 X56581 Vibrio natriegens str. 111 ATCC 14048
prokMSA_id:9240 X74720 Vibrio parahaemolyticus str. 113 CIP 75.02
prokMSA_id:9243 X74706 Vibrio harveyi CIP 103192
prokMSA_id:9247 X74710 Vibrio mediterranei CIP 103203
prokMSA_id:9248 AF007115 Vibrio shiloi str. AK-1
prokMSA_id:9286 U46579 Vibrio scophthalmi str. A089 CECT 4638
prokMSA_id:9288 X74689 Vibrio aestuarianus str. OY-0-002 CIP 102971
prokMSA_id:9290 X76334 Vibrio vulnificus str. C7184
prokMSA_id:21967 AF284227 Vibrio sp. 73 
prokMSA_id:24526 AF319769 Vibrio sp. Ex25 
prokMSA_id:26876 AJ391193 Vibrio sp. AS-32 
prokMSA_id:29344 AF319768 Vibrio sp. BB4 
prokMSA_id:31661 AY035896 Vibrio campbellii 
prokMSA_id:34170 AF410778 Vibrio sp. NLEP97-1598 
prokMSA_id:36201 AF388388 Vibrio parahaemolyticus clone F44 
prokMSA_id:45699 AF369642 Vibrio sp. AB003 
prokMSA_id:47824 AF388386 Vibrio parahaemolyticus clone Vp23 
prokMSA_id:48368 AJ421445 Vibrio ichthyoenteri strain DSM 14397T
prokMSA_id:48633 AF388389 Vibrio parahaemolyticus clone Vp 27 
prokMSA_id:50883 AY046956 Vibrio harveyi strain M4 
prokMSA_id:55336 AF513447 Vibrio alginolyticus 
prokMSA_id:59705 AB081772 Vibrio sp. 442 
prokMSA_id:60045 AJ316187 Vibrio sp. R-14939 strain R-14939
prokMSA_id:60376 AF513463 Vibrio proteolyticus 
prokMSA_id:60378 AF513461 Vibrio sp. PH1 
prokMSA_id:62643 AB089204 Vibrio sp. No.6 
prokMSA_id:66026 AY034144 Vibrio sp. C33 
prokMSA_id:71300 AJ316168 Vibrio sp. R-14968 strain R-14968
prokMSA_id:72695 AF246980 Vibrio sp. 98CJ11027 
prokMSA_id:73319 AJ316167 Vibrio sp. LMG 10953 strain LMG 10953
prokMSA_id:73398 AF410779 Vibrio sp. NLEP97-1599 
prokMSA_id:73534 AJ316169 Vibrio sp. LMG 19270 strain LMG 19270
prokMSA_id:75675 NC_004459 Vibrio vulnificus CMCP6 chromosome I complete 
prokMSA_id:81625 NC_004603 Vibrio parahaemolyticus RIMD 2210633 chromosome I complete 
prokMSA_id:82255 NC_004605 Vibrio parahaemolyticus RIMD 2210633 chromosome II complete 
prokMSA_id:82286 AP005083 Vibrio parahaemolyticus chromosome 1 complete 11/11
prokMSA_id:82362 AP005073 Vibrio parahaemolyticus chromosome 1 complete 1/11
2.28.3.24 AEROMONAS_GROUP 134 seqs
2.28.3.24.1 RUM.AMYLOPHILUS_SUBGROUP 8 seqs
2.28.3.24.1.14568 OTU 1 seq
prokMSA_id:60774 AF497808 Anaerobiospirillum sp. B0101 
2.28.3.24.1.14565 OTU 1 seq
prokMSA_id:60771 AF497809 Anaerobiospirillum sp. 3J102 
2.28.3.24.1.31384 OTU 3 seqs
prokMSA_id:9348 X06765 Ruminobacter amylophilus ATCC 29744
prokMSA_id:9349 Y15992 Ruminobacter amylophilus DSM 1361
prokMSA_id:9350 AB004908 Ruminobacter amylophilus str. Bovine rumen NIAH 3
2.28.3.24.1.6407 OTU 1 seq
prokMSA_id:9351 Y17599 Succinimonas amylolytica DSM 2873
2.28.3.24.1.6411 OTU 1 seq
prokMSA_id:9357 Y17600 Succinivibrio dextrinosolvens DSM 3072
2.28.3.24.1.6409 OTU 1 seq
prokMSA_id:9356 U96412 Anaerobiospirillum succiniciproducens str. S411 ATCC 29305
2.28.3.24.2 ARM.HYDROPHILA_SUBGROUP 126 seqs
2.28.3.24.2.10420 OTU 1 seq
prokMSA_id:82407 AB105442 clone:A-8
2.28.3.24.2.20534 OTU 1 seq
prokMSA_id:25552 AF427150 Aeromonas sp. PAR2A 
2.28.3.24.2.33280 OTU 2 seqs
prokMSA_id:9401 AB019390 str. MBIC1298 ATCC 27123
prokMSA_id:35016 AF168367 Oceanomonas baumannii 
2.28.3.24.2.39977 OTU 31 seqs
prokMSA_id:9359 AJ009859 Aeromonas salmonicida subsp. smithia CCM 4103
prokMSA_id:9375 X60405 Aeromonas salmonicida subsp. salmonicida NCIMB 1102
prokMSA_id:9376 X60406 Aeromonas salmonicida subsp. salmonicida NCIMB 1102
prokMSA_id:9382 U88655 Aeromonas 'CDC 862-83' CDC 862-83
prokMSA_id:9395 X74681 Aeromonas salmonicida subsp. salmonicida CIP 103209
prokMSA_id:9396 AJ224309 Aeromonas encheleia str. A 1881
prokMSA_id:9398 AF134065 Aeromonas salmonicida subsp. pectinolytica str. 34mel
prokMSA_id:9420 X74680 Aeromonas salmonicida subsp. masoucida str. 1-1-1 CIP 103210
prokMSA_id:9444 X60407 Aeromonas salmonicida subsp. achromogenes NCIMB 1110
prokMSA_id:9445 AB027005 Aeromonas salmonicida str. NI-441 T83-k-sw-2 IS-205
prokMSA_id:9446 AB027006 Aeromonas salmonicida str. GU-187 IB-277
prokMSA_id:9447 AJ009860 Haemophilus piscium NCIMB 1952
prokMSA_id:18994 AJ308468 Aeromonas sp. 54 isolate 54
prokMSA_id:22088 AF200329 Aeromonas salmonicida 
prokMSA_id:29107 AB034759 Aeromonas bestiarum 
prokMSA_id:32945 AB027542 Aeromonas salmonicida masoucida 
prokMSA_id:34508 AJ295654 KF/GS-JG36-20 
prokMSA_id:34597 AB027544 Aeromonas salmonicida smithia 
prokMSA_id:34796 AB027545 Aeromonas salmonicida atypical 
prokMSA_id:35873 AB034762 Aeromonas hydrophila 
prokMSA_id:36209 AB027546 Aeromonas salmonicida atypical 
prokMSA_id:37909 AB034760 Aeromonas caviae 
prokMSA_id:40978 AB027543 Aeromonas salmonicida achromogenes 
prokMSA_id:42473 AF140018 Aeromonas sp. ML-S4 
prokMSA_id:44568 AF108136 Aeromonas salmonicida 
prokMSA_id:46643 AF324532 gamma BioIuz K1 
prokMSA_id:51222 AB027541 Aeromonas salmonicida salmonicida 
prokMSA_id:56271 AF513938 Aeromonadaceae clone PH-B39N 
prokMSA_id:59115 AF418217 Aeromonas media isolate 4 
prokMSA_id:59116 AF418219 Aeromonas media isolate 6 
prokMSA_id:74870 AB034761 Aeromonas hydrophila 
2.28.3.24.2.42162 OTU 5 seqs
prokMSA_id:9367 X74682 Aeromonas schubertii ATCC 43700
prokMSA_id:9449 X60416 Aeromonas schubertii DSM 4882
prokMSA_id:9450 U88663 Aeromonas 'CDC 2478-85' CDC 2478-85
prokMSA_id:78527 AJ536820 Aeromonas simiae strain IBS S6652
prokMSA_id:79043 AJ536821 Aeromonas simiae strain IBS S6874T
2.28.3.24.2.42499 OTU 85 seqs
prokMSA_id:9360 X74675 Aeromonas eucrenophila CIP 76.17
prokMSA_id:9361 S39232 Aeromonas allosaccharophila CECT 4199
prokMSA_id:9362 U88658 Aeromonas 'CDC 715-84' CDC 715-84
prokMSA_id:9363 X74676 Aeromonas hydrophila ATCC 35654
prokMSA_id:9365 AB032088 Aeromonas hydrophila str. Ef1L1
prokMSA_id:9369 X60410 Aeromonas media ATCC 33907
prokMSA_id:9372 X60404 Aeromonas hydrophila subsp. hydrophila ATCC 7966
prokMSA_id:9373 AF099021 Aeromonas hydrophila str. M29
prokMSA_id:9374 AF099022 Aeromonas hydrophila str. T20
prokMSA_id:9381 X74677 Aeromonas hydrophila subsp. hydrophila CIP 76.14
prokMSA_id:9384 X74678 Aeromonas jandaei ATCC 49568
prokMSA_id:9385 AF170914 Aeromonas culicicola strain MTCC 3249 
prokMSA_id:9386 X71120 Aeromonas ichthiosmia DSM 6393
prokMSA_id:9387 AJ224308 Aeromonas popoffii LMG 17541
prokMSA_id:9388 AJ223179 Aeromonas F498B str. F498B
prokMSA_id:9389 AJ223180 Aeromonas popoffii LMG 17542
prokMSA_id:9390 AJ223181 Aeromonas popoffii LMG 17543
prokMSA_id:9391 AJ223182 Aeromonas F479E str. F479E
prokMSA_id:9399 S42871 Aeromonas trota ATCC 49657
prokMSA_id:9400 X60413 Aeromonas jandaei ATCC 49568
prokMSA_id:9406 X60411 Aeromonas eucrenophila NCIMB 74
prokMSA_id:9407 U88661 Aeromonas 'CDC 859-83' CDC 859-83
prokMSA_id:9410 U88662 Aeromonas jandaei CDC 787-80
prokMSA_id:9411 AF063003 Aeromonas RC278 str. RC278MM85
prokMSA_id:9412 AF099025 Aeromonas jandaei str. M34
prokMSA_id:9413 AF099026 Aeromonas jandaei str. B10
prokMSA_id:9415 X60412 Aeromonas sobria NCIMB 12065
prokMSA_id:9416 AF005256 Aeromonas MR-64 str. MR-64
prokMSA_id:9417 X60408 Aeromonas caviae NCIMB 13016
prokMSA_id:9419 U88660 Aeromonas 'CDC 2452-91' CDC 2452-91
prokMSA_id:9422 U88656 Aeromonas 'CDC 9013-89' CDC 9013-89
prokMSA_id:9424 AF099027 Aeromonas T8 str. T8
prokMSA_id:9425 X74684 Aeromonas veronii ATCC 35624
prokMSA_id:9426 U88654 Aeromonas 'CDC 437-84' CDC 437-84
prokMSA_id:9427 AF037271 Aeromonas RC50 str. RC50; FC643
prokMSA_id:9431 X60417 Aeromonas sp. ATCC 35941
prokMSA_id:9433 X60415 Aeromonas trota ATCC 49657
prokMSA_id:9434 X74683 Aeromonas sobria CIP 74.33
prokMSA_id:9437 X60414 Aeromonas veronii NCIMB 13015
prokMSA_id:9438 U88659 Aeromonas 'CDC 964-83' CDC 964-83
prokMSA_id:9439 AB028881 Aeromonas guangheii str. 95-173
prokMSA_id:9440 AF099023 Aeromonas veronii str. M16
prokMSA_id:9441 AF099024 Aeromonas veronii str. B1
prokMSA_id:9452 X74674 Aeromonas caviae CIP 76.16
prokMSA_id:9453 X74679 Aeromonas media ATCC 33907
prokMSA_id:9454 AF157690 Aeromonas media str. 86352
prokMSA_id:20270 AB076858 Aeromonas sp. PG3-3 
prokMSA_id:21594 AF324536 gamma BioIuz K43 
prokMSA_id:26539 AF324534 gamma BioIuz K40 
prokMSA_id:28522 AF468055 Aeromonas hydrophila strain 45/90 
prokMSA_id:30233 AF324535 gamma BioIuz K41 
prokMSA_id:36658 AF189694 Aeromonas sp. BC16 
prokMSA_id:39643 AB076859 Aeromonas sp. PG4-1 
prokMSA_id:40526 AF324530 gamma BioIuz K30 
prokMSA_id:42667 AF468056 Aeromonas hydrophila strain 4AK4 
prokMSA_id:43157 AB034763 Aeromonas sp
prokMSA_id:46545 AF150688 Elbe River snow isolate Iso10neu 
prokMSA_id:46908 AF324531 gamma BioIuz K33 
prokMSA_id:49072 AF410949 Aeromonas veronii 
prokMSA_id:51245 AF410780 Aeromonas sp. NLEP A-1607 
prokMSA_id:52200 AF324533 gamma BioIuz K39 
prokMSA_id:55879 AF418211 Aeromonas veronii clone 3 
prokMSA_id:58410 AF418213 Aeromonas veronii clone 5 
prokMSA_id:58413 AF418212 Aeromonas veronii clone 4 
prokMSA_id:58415 AF418209 Aeromonas veronii clone 1 
prokMSA_id:58982 AY130992 Aeromonas culicicola strain MTCC 3249 substrain SLH 
prokMSA_id:58983 AY130991 Aeromonas culicicola strain MTCC 3249 substrain SH 
prokMSA_id:59117 AF418218 Aeromonas media isolate 5 
prokMSA_id:59119 AF418216 Aeromonas media isolate 3 
prokMSA_id:59291 AJ508765 Aeromonas hydrophila subsp. dhakensis strain LMG 19562T
prokMSA_id:61814 AF529348 gamma clone CLs70 
prokMSA_id:61823 AF529341 gamma clone CLi66 
prokMSA_id:66205 AJ278105 Aeromonas sp. strain RR8
prokMSA_id:67000 AJ458413 Aeromonas sp. LMG 13062 strain LMG 13062
prokMSA_id:67001 AJ458412 Aeromonas sp. LMG 17065 . strain LMG 17065
prokMSA_id:67002 AJ458410 Aeromonas sp. LMG 16405 strain LMG 16405
prokMSA_id:67003 AJ458407 Aeromonas sp. LMG 16179 strain LMG 16179
prokMSA_id:67004 AJ458406 Aeromonas sp. LMG 13691 strain LMG 13691
prokMSA_id:67005 AJ458405 Aeromonas sp. LMG 13061 strain LMG 13061
prokMSA_id:67011 AJ458416 Aeromonas encheleia strain E195
prokMSA_id:67012 AJ458415 Aeromonas encheleia strain E194
prokMSA_id:67013 AJ458409 Aeromonas encheleia strain LMG 16331
prokMSA_id:67014 AJ458411 Aeromonas eucrenophila strain LMG 17059
prokMSA_id:69929 AJ508766 Aeromonas hydrophila subsp. ranae strain LMG 19707T
prokMSA_id:82433 AB105443 clone:A-9
2.28.3.24.2.7153 OTU 1 seq
prokMSA_id:9448 AF018462 clone 12-18
2.28.3.26 HAEMOPHILUS-PASTEURELLA_GROUP 172 seqs
2.28.3.26.4 PAS.BISGAARD_TAXON_13_SUBGROUP 14 seqs
2.28.3.26.4.21331 OTU 1 seq
prokMSA_id:62944 AY057994 Pasteurella multocida subsp. tigris complete 
2.28.3.26.4.34066 OTU 13 seqs
prokMSA_id:16802 AY078997 Pasteurella multocida strain PM966 
prokMSA_id:17819 AF294412 Pasteurella multocida subsp. gallicida 
prokMSA_id:18195 AF294411 Pasteurella multocida subsp. septica strain CCUG 17977 
prokMSA_id:18868 AY078996 Pasteurella multocida strain PM2 
prokMSA_id:19379 AF326323 Pasteurella multocida subsp. gallicida strain HIM830-7T 
prokMSA_id:29263 AF225205 Pasteurella multocida subsp. septica 
prokMSA_id:34012 AF224298 Pasteurella sp. MCCM 00657 
prokMSA_id:37549 AY079000 Pasteurella multocida subsp. septica strain NCTC 11995 
prokMSA_id:37670 AY078999 Pasteurella multocida subsp. multocida strain NCTC 10322 
prokMSA_id:42806 AF224297 Pasteurella multocida subsp. gallicida 
prokMSA_id:45341 AY078998 Pasteurella multocida subsp. gallicida strain NCTC 10204 
prokMSA_id:49634 AF326325 Pasteurella multocida subsp. septica 
prokMSA_id:72192 AF326324 Pasteurella multocida subsp. gallicida strain 77179 
2.28.3.26.5 PAS.DAGMATIS 1 seq
2.28.3.26.5.19458 OTU 1 seq
prokMSA_id:69985 AF224296 Pasteurella pneumotropica 
2.28.3.26.7 PASTEURELLA.CANIS 1 seq
2.28.3.26.7.20528 OTU 1 seq
prokMSA_id:18332 AF227861 Pasteurella sp. 91985 
2.28.3.26.8 PAS.SP_CCUG_19794 1 seq
2.28.3.26.8.7183 OTU 1 seq
prokMSA_id:9466 M75052 Pasteurella sp. CCUG 19794
2.28.3.26.9 PAS.ANATIS_SUBGROUP 23 seqs
2.28.3.26.9.21895 OTU 1 seq
prokMSA_id:64296 AY038591 Actinobacillus salpingitidis 
2.28.3.26.9.31952 OTU 4 seqs
prokMSA_id:27031 AF228017 Salpingitia sp. CCM 5976 
prokMSA_id:42277 AF228018 Salpingitia sp. Gerl.2740/89 
prokMSA_id:52792 AF228015 Salpingitia sp. CCM 5974 
prokMSA_id:70689 AF228016 Salpingitia sp. CCM 5975 
2.28.3.26.9.33335 OTU 16 seqs
prokMSA_id:30522 AF228001 Pasteurella anatis strain F149 
prokMSA_id:34804 AF228005 Salpingitia sp. Gerl.3348/80 
prokMSA_id:48840 AF228006 Salpingitia sp. Gerl.220 
prokMSA_id:50261 AF228012 Salpingitia sp. BK3387.2 
prokMSA_id:70037 AF228003 Salpingitia sp. CCM 5995 
prokMSA_id:70476 AF228009 Salpingitia sp. 12158 
prokMSA_id:71725 AF228010 Salpingitia sp. 20558 
prokMSA_id:72708 AF228008 Salpingitia sp. 10672/6 
prokMSA_id:73007 AY038594 Pasteurella anatis strain Hom.3 
prokMSA_id:73377 AF228013 Salpingitia sp. BJ3453 
prokMSA_id:73524 AF228011 Salpingitia sp. 36961/sv7 
prokMSA_id:73614 AF228014 Salpingitia sp. Gerl.4224 
prokMSA_id:73745 AF228007 Salpingitia sp. IPDH 697/78 
prokMSA_id:74034 AF224310 Actinobacillus cf. salpingitidis CCUG 28018 
prokMSA_id:74083 AF228002 Pasteurella anatis strain F279 
prokMSA_id:74275 AF228004 Salpingitia sp. 10672/9 
2.28.3.26.9.7184 OTU 1 seq
prokMSA_id:9469 L06079 Pasteurella sp. str. Bisgaard Taxon 3
2.28.3.26.9.7194 OTU 1 seq
prokMSA_id:9470 L06078 Pasteurella sp. str. Bisgaard Taxon 2
2.28.3.26.10 H.INFLUENZAE_SUBGROUP 18 seqs
2.28.3.26.10.18825 OTU 1 seq
prokMSA_id:33152 AJ243202 Pasteurella salmonicida isolate 95A1
2.28.3.26.10.29129 OTU 7 seqs
prokMSA_id:9473 L42023 Haemophilus influenzae str. Rd =rrnD
prokMSA_id:9481 L42023 Haemophilus influenzae str. Rd =rrnE
prokMSA_id:9482 L42023 Haemophilus influenzae str. Rd =rrnC
prokMSA_id:9483 L42023 Haemophilus influenzae str. Rd =rrnF
prokMSA_id:9500 L42023 Haemophilus influenzae str. Rd =rrnB
prokMSA_id:9507 L42023 Haemophilus influenzae str. Rd =
prokMSA_id:49616 NC_000907 Haemophilus influenzae Rd complete genome
2.28.3.26.10.30647 OTU 2 seqs
prokMSA_id:9478 AF012090 Pasteurella pneumotropica str. CNP 160
prokMSA_id:74548 AF224301 Pasteurellaceae gen. sp. Forsyth A3 
2.28.3.26.10.31427 OTU 2 seqs
prokMSA_id:9474 Y09654 Actinobacillus sp. str. M1933/96/1
prokMSA_id:9475 Y09653 Actinobacillus sp. str. M2000/95/1
2.28.3.26.10.42818 OTU 2 seqs
prokMSA_id:9479 X87976 Haemophilus influenzae str. biotype III CCUG 7585
prokMSA_id:44852 AF224306 Haemophilus influenzae ATCC 9833 
2.28.3.26.10.5754 OTU 1 seq
prokMSA_id:19891 AF224305 Haemophilus influenzae ATCC 8142 
2.28.3.26.10.7961 OTU 1 seq
prokMSA_id:9511 X89379 Pasteurella phocoenarum str. M1063U NCTC 12872
2.28.3.26.10.7960 OTU 1 seq
prokMSA_id:9510 X89377 Actinobacillus delphinicola str. M1063L NCTC 12871
2.28.3.26.10.7958 OTU 1 seq
prokMSA_id:9509 X87978 Haemophilus influenzae str. 16N CIP 103723
2.28.3.26.11 H.PARASUIS_SUBGROUP 41 seqs
2.28.3.26.11.15879 OTU 1 seq
prokMSA_id:45916 AF224291 Pasteurella caballi MCCM 00841 
2.28.3.26.11.16896 OTU 1 seq
prokMSA_id:31672 AF268962 Actinobacillus indolicus strain H1269 
2.28.3.26.11.17404 OTU 1 seq
prokMSA_id:32352 AJ251339 Bisgaardia hudsonenesis strain 98-D-690B
2.28.3.26.11.32683 OTU 3 seqs
prokMSA_id:29369 AF224290 Pasteurella aerogenes MCCM 01551 
prokMSA_id:73163 AF224289 Actinobacillus rossii 
prokMSA_id:73923 AF224288 Pasteurella aerogenes MCCM 01550 
2.28.3.26.11.33476 OTU 8 seqs
prokMSA_id:9533 AB004028 Haemophilus parasuis str. 354
prokMSA_id:9534 AB004029 Haemophilus parasuis str. 362
prokMSA_id:9535 AB004030 Haemophilus parasuis str. 366
prokMSA_id:9536 AB004036 Haemophilus parasuis str. 697
prokMSA_id:9537 AB004038 Haemophilus parasuis str. Nagasaki MAFF 911038
prokMSA_id:23554 AB078974 Haemophilus parasuis strain:322
prokMSA_id:24900 AB078973 Haemophilus parasuis isolate:319
prokMSA_id:30824 AB078972 Haemophilus parasuis isolate:312
2.28.3.26.11.34324 OTU 13 seqs
prokMSA_id:9519 AB004024 Haemophilus parasuis str. No.131
prokMSA_id:9520 AB004025 Haemophilus parasuis str. 188
prokMSA_id:9521 AB004026 Haemophilus parasuis str. 271
prokMSA_id:9522 AB004027 Haemophilus parasuis str. 327
prokMSA_id:9523 AB004031 Haemophilus parasuis str. 427
prokMSA_id:9524 AB004032 Haemophilus parasuis str. No.4 MAFF 911032
prokMSA_id:9525 AB004033 Haemophilus parasuis str. 545
prokMSA_id:9526 AB004034 Haemophilus parasuis str. 550
prokMSA_id:9527 AB004035 Haemophilus parasuis str. 635
prokMSA_id:9528 AB004037 Haemophilus parasuis str. 82
prokMSA_id:9529 AB004039 Haemophilus parasuis str. SW114 MAFF 911035
prokMSA_id:9530 AB004040 Haemophilus parasuis str. SW124 MAFF 911037
prokMSA_id:9531 AB004041 Haemophilus parasuis str. SW140 MAFF 911034
2.28.3.26.11.34380 OTU 4 seqs
prokMSA_id:70062 AF268958 Actinobacillus porcinus strain H1498 
prokMSA_id:70580 AF371856 clone p-4307-4Wa3 
prokMSA_id:71733 AF268955 Actinobacillus porcinus strain H1281 
prokMSA_id:73816 AF268952 Actinobacillus porcinus strain H1215 
2.28.3.26.11.40746 OTU 6 seqs
prokMSA_id:22523 AF268965 Actinobacillus indolicus strain H1422 
prokMSA_id:42737 AF268961 Actinobacillus indolicus strain H1261 
prokMSA_id:49124 AF268964 Actinobacillus indolicus strain H1419 
prokMSA_id:70885 AF268960 Actinobacillus indolicus strain H1235 
prokMSA_id:71115 AF268966 Actinobacillus indolicus strain H1106 
prokMSA_id:71539 AF268959 Actinobacillus indolicus strain H873 
2.28.3.26.11.7963 OTU 1 seq
prokMSA_id:9514 U65583 Actinobacillus porcinus str. NM319
2.28.3.26.11.7962 OTU 1 seq
prokMSA_id:9513 U65584 Actinobacillus indolicus str. 46KC2
2.28.3.26.11.8196 OTU 1 seq
prokMSA_id:21372 AF371855 clone p-4752-2Wb2 
2.28.3.26.11.9243 OTU 1 seq
prokMSA_id:74465 AF224303 Pasteurella sp. CCUG 28028 
2.28.3.26.12 H.PARACUNICULUS_SUBGROUP 1 seq
2.28.3.26.12.5904 OTU 1 seq
prokMSA_id:73432 AF224295 Actinobacillus capsulatus P796 
2.28.3.26.13 H.DUCREYI_SUBGROUP 2 seqs
2.28.3.26.13.17459 OTU 1 seq
prokMSA_id:62471 AF525028 Haemophilus ducreyi isolate Amsterdam 
2.28.3.26.13.8003 OTU 1 seq
prokMSA_id:9545 M63900 Haemophilus ducreyi CIP 542
2.28.3.26.15 PAS.VOLANTIUM_SUBGROUP 2 seqs
2.28.3.26.15.11009 OTU 1 seq
prokMSA_id:36769 AF224311 Haemophilus sp. MCCM 01557 
2.28.3.26.15.8015 OTU 1 seq
prokMSA_id:9555 M75064 Haemophilus haemoglobinophilus NCTC 1659
2.28.3.26.17 ACB.PLEUROPNEUMONIAE_SUBGROUP 25 seqs
2.28.3.26.17.16009 OTU 1 seq
prokMSA_id:45954 AF224284 Actinobacillus sp. CCUG 28015 
2.28.3.26.17.34842 OTU 5 seqs
prokMSA_id:9581 AF146371 Actinobacillus pleuropneumoniae str. 77002
prokMSA_id:9583 AF033059 Actinobacillus pleuropneumoniae str. 658
prokMSA_id:26134 AF302255 Actinobacillus pleuropneumoniae strain N273 rrs 
prokMSA_id:33721 AF302256 Actinobacillus pleuropneumoniae strain 3906 rrs 
prokMSA_id:42766 AY017472 Actinobacillus pleuropneumoniae HS143 
2.28.3.26.17.40398 OTU 6 seqs
prokMSA_id:9585 M75067 Actinobacillus capsulatus CCUG 19799
prokMSA_id:9586 AF145255 Actinobacillus capsulatus str. 63595
prokMSA_id:56644 AF247721 Actinobacillus equuli strain T 355/87 
prokMSA_id:58551 AF247716 Actinobacillus sp. F 154 
prokMSA_id:70103 AF381187 Actinobacillus cf. equuli 
prokMSA_id:72164 AF247714 Actinobacillus sp. F 92 
2.28.3.26.17.40567 OTU 2 seqs
prokMSA_id:69899 AY029174 Actinobacillus arthritidis 
prokMSA_id:73547 AF247712 Actinobacillus sp. CCUG 24862 
2.28.3.26.17.42580 OTU 3 seqs
prokMSA_id:58549 AF247717 Actinobacillus sp. F 141 
prokMSA_id:71361 AF247718 Actinobacillus sp. F 490 
prokMSA_id:72024 AF247719 Actinobacillus sp. H 4272/4 
2.28.3.26.17.42842 OTU 2 seqs
prokMSA_id:58554 AF247713 Actinobacillus sp. Ac 7 
prokMSA_id:70395 AF247723 Actinobacillus lignieresii strain F 264 
2.28.3.26.17.5049 OTU 1 seq
prokMSA_id:73342 AF247722 Actinobacillus lignieresii strain F 127 
2.28.3.26.17.5743 OTU 1 seq
prokMSA_id:21084 AF359941 Acidithiobacillus thiooxidans 
2.28.3.26.17.7064 OTU 1 seq
prokMSA_id:58548 AF247720 Actinobacillus equuli strain I5445/4 
2.28.3.26.17.7076 OTU 1 seq
prokMSA_id:58552 AF247715 Actinobacillus sp. F 119 
2.28.3.26.17.7280 OTU 1 seq
prokMSA_id:74211 AF224283 Actinobacillus pleuropneumoniae MCCM 00189 
2.28.3.26.17.8053 OTU 1 seq
prokMSA_id:9579 M75068 Actinobacillus lignieresii NCTC 4189
2.28.3.26.18 MNH.HAEMOLYTICA_SUBGROUP 26 seqs
2.28.3.26.18.29904 OTU 3 seqs
prokMSA_id:9602 U57076 Pasteurella sp. str. Bisgaard Taxon 15 CCUG 16500
prokMSA_id:9612 AF053899 Mannheimia varigena str. F155 CCM 5786
prokMSA_id:38515 AF224287 Pasteurella haemolytica CCUG 28148 
2.28.3.26.18.32844 OTU 3 seqs
prokMSA_id:9593 U57071 Mannheimia haemolytica str. PH360; serotype UG4
prokMSA_id:9601 U57070 Mannheimia haemolytica str. PH40; UT35; serotype UG4
prokMSA_id:9611 AF053893 Mannheimia varigena str. 177 CCUG 38462
2.28.3.26.18.33991 OTU 3 seqs
prokMSA_id:9590 U57072 Mannheimia haemolytica str. PH704; serotype UG5
prokMSA_id:9591 AF053894 Mannheimia R19.2 str. R19.2 CCUG 38463
prokMSA_id:9592 AF053898 Mannheimia HPA121 str. HPA121 CCUG 38468
2.28.3.26.18.34159 OTU 12 seqs
prokMSA_id:9596 U57066 Mannheimia haemolytica str. PH2PH8; serotype A1
prokMSA_id:9597 AF053888 Mannheimia glucosida str. P731 CCUG 38456
prokMSA_id:9598 AF053890 Mannheimia glucosida str. UT18 CCUG 38458
prokMSA_id:9600 AF060699 Mannheimia haemolytica NCTC 9380
prokMSA_id:9603 AF053900 Mannheimia ruminalis str. HPA92 CCUG 38470
prokMSA_id:9604 AF053887 Mannheimia UT26 str. UT26 CCUG 38455
prokMSA_id:9606 U57069 Mannheimia haemolytica str. PH290; serotype UG3
prokMSA_id:9607 AF053892 Mannheimia glucosida str. P733 CCUG 38460
prokMSA_id:9613 U57068 Mannheimia haemolytica str. PH152; UT23; serotype UG3
prokMSA_id:9614 AF053891 Mannheimia glucosida str. P737 CCUG 38459
prokMSA_id:9615 U57067 Mannheimia haemolytica str. PH344; serotype A11
prokMSA_id:9616 AF053889 Mannheimia glucosida str. P925 CCUG 38457
2.28.3.26.18.41102 OTU 2 seqs
prokMSA_id:9599 AF053895 Mannheimia HPA102 str. HPA102 CCUG 38464
prokMSA_id:9605 AF053896 Mannheimia ruminalis str. HPA98 CCUG 38466
2.28.3.26.18.6124 OTU 1 seq
prokMSA_id:72830 AF224286 Mannheimia sp. MCCM 00145 
2.28.3.26.18.8820 OTU 1 seq
prokMSA_id:9608 AF053902 Mannheimia granulomatis str. 26 ATCC 49244
2.28.3.26.18.8822 OTU 1 seq
prokMSA_id:9609 AF053901 Mannheimia granulomatis str. Ph13 CCUG 26828
2.28.3.26.19 H.ACTINOMYCETEMCOMITANS_SUBGROUP 17 seqs
2.28.3.26.19.2427 OTU 1 seq
prokMSA_id:49556 AF227858 str. 86355 
2.28.3.26.19.29926 OTU 2 seqs
prokMSA_id:9621 M75035 Haemophilus actinomycetemcomitans str. FDC Y4
prokMSA_id:9636 M75037 Haemophilus actinomycetemcomitans ATCC 29524
2.28.3.26.19.32743 OTU 3 seqs
prokMSA_id:17538 AF224299 Haemophilus segnis 
prokMSA_id:54767 AF300472 Haemophilus segnis 
prokMSA_id:76576 AJ534673 gamma clone S15A-MN19
2.28.3.26.19.40445 OTU 7 seqs
prokMSA_id:81158 AF549403 Histophilus somni 189-83 rrn 
prokMSA_id:81203 AF549399 Histophilus somni CCUG 46773 rrn 
prokMSA_id:81519 AF549389 Histophilus somni CCUG 18779 rrn 
prokMSA_id:81661 AF549397 Histophilus somni CCUG 46771 rrn 
prokMSA_id:81866 AF549391 Histophilus somni CCUG 46775 rrn 
prokMSA_id:82244 AF549390 Histophilus somni CCUG 12839 rrn 
prokMSA_id:82382 AF549400 Histophilus somni CCUG 36158 rrn 
2.28.3.26.19.4801 OTU 1 seq
prokMSA_id:81142 AF549393 Histophilus somni CCUG 46774 rrn 
2.28.3.26.19.8835 OTU 1 seq
prokMSA_id:9619 AF024528 CCUG 15572
2.28.3.26.19.8845 OTU 1 seq
prokMSA_id:9620 M75039 Haemophilus actinomycetemcomitans ATCC 33384
2.28.3.26.19.8848 OTU 1 seq
prokMSA_id:9623 AF024525 Actinobacillus succinogenes str. 130Z ATCC 55618
2.28.3.27 ENTERICS_AND_RELATIVES 775 seqs
2.28.3.27.1 BUCHNERA_SUBGROUP 44 seqs
2.28.3.27.1.10123 OTU 1 seq
prokMSA_id:36645 AJ296753 Buchnera aphidicola Stomaphis quercus 
2.28.3.27.1.12286 OTU 1 seq
prokMSA_id:67659 AJ417833 Buchnera sp
2.28.3.27.1.12505 OTU 1 seq
prokMSA_id:23181 AJ296747 Buchnera aphidicola Pterocomma populeum 
2.28.3.27.1.17047 OTU 1 seq
prokMSA_id:23853 AJ296758 Buchnera aphidicola Panaphis juglandis 
2.28.3.27.1.17661 OTU 1 seq
prokMSA_id:54656 AF263559 Secondary endosymbiont of Cacopsylla myrthi ; intergenic spa
2.28.3.27.1.18477 OTU 1 seq
prokMSA_id:17473 AJ296748 Buchnera aphidicola Eriosoma lanuginosum 
2.28.3.27.1.18743 OTU 1 seq
prokMSA_id:33113 AJ296757 Buchnera aphidicola Thelaxes suberi 
2.28.3.27.1.1964 OTU 1 seq
prokMSA_id:41602 AJ296752 Buchnera aphidicola Baizongia pistaciae 
2.28.3.27.1.20631 OTU 1 seq
prokMSA_id:24924 AJ296754 Buchnera aphidicola Tuberolachnus salignus 
2.28.3.27.1.21632 OTU 1 seq
prokMSA_id:41305 AJ296756 Buchnera aphidicola Lachnus roboris 
2.28.3.27.1.26386 OTU 2 seqs
prokMSA_id:38168 AB064507 Buchnera aphidicola Yamatocallis tokyoensis isolate:#207 pri
prokMSA_id:40406 AB064508 Buchnera aphidicola Yamatocallis tokyoensis isolate:#317 pri
2.28.3.27.1.2638 OTU 1 seq
prokMSA_id:50183 AJ296755 Buchnera aphidicola Maculolachnus submacula 
2.28.3.27.1.29300 OTU 7 seqs
prokMSA_id:9644 M27039 symbiont of symbiont P of Acyrthosiphon pisum
prokMSA_id:20966 AB033773 Buchnera sp
prokMSA_id:35977 AB033776 Buchnera sp
prokMSA_id:47707 NC_002528 Buchnera sp. APS complete genome
prokMSA_id:51167 AB033774 Buchnera sp
prokMSA_id:52753 AB033772 Buchnera sp
prokMSA_id:70111 AP001118 Buchnera sp. APS genomic complete segment 1/2
2.28.3.27.1.31755 OTU 2 seqs
prokMSA_id:9650 M63254 Buchnera aphidicola
prokMSA_id:53693 AJ296750 Buchnera aphidicola Pemphigus populi 
2.28.3.27.1.31898 OTU 2 seqs
prokMSA_id:9652 Y11973 Buchnera aphidicola
prokMSA_id:24034 AJ296749 Buchnera aphidicola Tetraneura caerulescens 
2.28.3.27.1.32891 OTU 6 seqs
prokMSA_id:9638 M63246 Buchnera aphidicola
prokMSA_id:9639 L18927 Buchnera aphidicola
prokMSA_id:9640 M63247 Buchnera aphidicola
prokMSA_id:9641 M63248 Buchnera aphidicola
prokMSA_id:64248 NC_004061 Buchnera aphidicola str. Sg Schizaphis graminum complete gen
prokMSA_id:64367 AE014100 Buchnera aphidicola str. Sg Schizaphis graminum section 25 o
2.28.3.27.1.42805 OTU 2 seqs
prokMSA_id:79263 AE014016 Buchnera aphidicola Baizongia pistaciae section 1 of 2 of th
prokMSA_id:79454 NC_004545 Buchnera aphidicola Baizongia pistaciae complete genome
2.28.3.27.1.6386 OTU 1 seq
prokMSA_id:34972 AJ296759 Buchnera aphidicola Hoplocallis pictus 
2.28.3.27.1.8035 OTU 1 seq
prokMSA_id:52069 AF286125 Secondary endosymbiont of Psylla pyricola 
2.28.3.27.1.8491 OTU 1 seq
prokMSA_id:20793 AJ296751 Buchnera aphidicola Geoica urticularia 
2.28.3.27.1.8868 OTU 1 seq
prokMSA_id:9642 M63250 Buchnera aphidicola
2.28.3.27.1.8869 OTU 1 seq
prokMSA_id:9643 Y11972 Buchnera aphidicola
2.28.3.27.1.8872 OTU 1 seq
prokMSA_id:9646 M63249 Buchnera aphidicola
2.28.3.27.1.8874 OTU 1 seq
prokMSA_id:9648 M63252 Buchnera aphidicola
2.28.3.27.1.8873 OTU 1 seq
prokMSA_id:9647 M63253 Buchnera aphidicola
2.28.3.27.1.8871 OTU 1 seq
prokMSA_id:9645 M63251 Buchnera aphidicola
2.28.3.27.1.8875 OTU 1 seq
prokMSA_id:9649 AB013087 unnamed organism
2.28.3.27.1.8895 OTU 1 seq
prokMSA_id:9651 Z19056 Buchnera aphidicola
2.28.3.27.1.8897 OTU 1 seq
prokMSA_id:9653 M63255 Buchnera aphidicola
2.28.3.27.2 ESCHERICHIA_SUBGROUP 101 seqs
2.28.3.27.2.18064 OTU 1 seq
prokMSA_id:63114 AY093468 clone MB-A2-149 
2.28.3.27.2.33196 OTU 2 seqs
prokMSA_id:9727 AF024608 Pantoea agglomerans str. TAC.III.94.1
prokMSA_id:9728 AF024609 clone thrips6.12
2.28.3.27.2.38728 OTU 11 seqs
prokMSA_id:9737 AF015259 Edwardsiella tarda CDC 4411-68
prokMSA_id:22744 AB050830 Edwardsiella tarda strain:NE8003
prokMSA_id:25008 AF310622 Edwardsiella ictaluri complete 
prokMSA_id:28203 AB050829 Edwardsiella tarda strain:Su100
prokMSA_id:33398 AB050831 Edwardsiella tarda strain:E381
prokMSA_id:34178 AB050826 Edwardsiella ictaluri 
prokMSA_id:37081 AB050828 Edwardsiella tarda strain:NuF194
prokMSA_id:40779 AB050825 Edwardsiella hoshinae 
prokMSA_id:48380 AB050827 Edwardsiella tarda strain:ATCC15947
prokMSA_id:70016 AB050833 Edwardsiella sp. AC8640 
prokMSA_id:74453 AB050832 Edwardsiella tarda strain:NB8031
2.28.3.27.2.41165 OTU 77 seqs
prokMSA_id:9654 U00096 Escherichia coli str. MG1655 =rrsC
prokMSA_id:9656 AE000452 Escherichia coli str. K-12
prokMSA_id:9659 U18997 Escherichia coli =rrsD
prokMSA_id:9660 Z83203 Hafnia alvei
prokMSA_id:9662 X96965 Shigella boydii
prokMSA_id:9672 X80722 Escherichia coli str. PK3 =rrnB
prokMSA_id:9673 M87049 Escherichia coli str. CgSC No. 189 =rrsA
prokMSA_id:9674 U00096 Escherichia coli str. MG1655 =rrsE
prokMSA_id:9676 X80731 Escherichia coli str. PK3
prokMSA_id:9678 X96963 Shigella flexneri str. Serovar 2a ATCC 29903
prokMSA_id:9679 Z83204 Escherichia coli
prokMSA_id:9680 X96964 Shigella sonnei
prokMSA_id:9684 X80733 Escherichia sp
prokMSA_id:9685 J01859 Escherichia coli
prokMSA_id:9686 X96966 Shigella dysenteriae ATCC 13313
prokMSA_id:9690 U00096 Escherichia coli str. MG1655 =rrsB
prokMSA_id:9691 X80727 Escherichia coli str. PK3 =rrnD
prokMSA_id:9692 X80729 Escherichia coli str. PK3 =rrnG
prokMSA_id:9693 X80732 Escherichia coli str. MC4100
prokMSA_id:9695 U00096 Escherichia coli str. MG1655 =rrsG
prokMSA_id:9696 X80723 Escherichia coli str. PK3 =rrnC
prokMSA_id:9697 U00006 Escherichia coli str. MG1655 =rrsB
prokMSA_id:9698 X80726 Shigella sonnei
prokMSA_id:9700 X80679 Shigella flexneri
prokMSA_id:9701 V00348 Escherichia coli =rrnB operon
prokMSA_id:9702 L10328 Escherichia coli str. MG1655 =rrsC
prokMSA_id:9704 X80724 Escherichia coli str. Seattle 1946 ATCC 25922
prokMSA_id:9705 A14565 Escherichia coli
prokMSA_id:9717 U00096 Escherichia coli str. MG1655 =rrsD
prokMSA_id:9719 X80721 Escherichia coli str. PK3 =
prokMSA_id:9721 X80680 Shigella dysenteriae
prokMSA_id:9724 J01695 Escherichia coli =rrnB operon
prokMSA_id:9725 AE000460 Escherichia coli str. K-12
prokMSA_id:9733 AE000471 Escherichia coli str. K-12
prokMSA_id:9734 AE000474 Escherichia coli str. K-12
prokMSA_id:9739 U00006 Escherichia coli str. MG1655
prokMSA_id:9741 X80725 Escherichia coli str. U 5/41 ATCC 11775
prokMSA_id:9742 U00096 Escherichia coli str. MG1655 =rrsA
prokMSA_id:17857 AF233451 Escherichia coli 
prokMSA_id:24909 AE000406 Escherichia coli K12 MG1655 section 296 of 400 of the comple
prokMSA_id:28107 E05133 coding of Escherichia coli
prokMSA_id:28317 AF371848 clone p-229-o5 
prokMSA_id:43594 AF371931 clone p-4395-4Wa2 
prokMSA_id:44734 U72488 Cloning vector pRNA8 complete 
prokMSA_id:46170 AF371849 clone p-463-o3 
prokMSA_id:46459 AE005555 Escherichia coli O157:H7 EDL933 genome contig 3 of 3 section
prokMSA_id:46645 AP002562 Escherichia coli O157:H7 complete genome section 13/20
prokMSA_id:46776 AE005628 Escherichia coli O157:H7 EDL933 genome contig 3 of 3 section
prokMSA_id:48448 AE000345 Escherichia coli K12 MG1655 section 235 of 400 of the comple
prokMSA_id:48916 AE005174 Escherichia coli O157:H7 complete genome
prokMSA_id:49069 NC_002655 Escherichia coli O157:H7 EDL933 complete genome
prokMSA_id:49908 NC_002695 Escherichia coli O157:H7 complete genome
prokMSA_id:51002 NC_000913 Escherichia coli K12 complete genome
prokMSA_id:55738 AJ487022 amplicon H2
prokMSA_id:55807 AE015342 Shigella flexneri 2a str. 301 section 305 of 412 of the comp
prokMSA_id:55834 AE015280 Shigella flexneri 2a str. 301 section 243 of 412 of the comp
prokMSA_id:58034 AE015412 Shigella flexneri 2a str. 301 section 375 of 412 of the comp
prokMSA_id:58035 AE015415 Shigella flexneri 2a str. 301 section 378 of 412 of the comp
prokMSA_id:58036 AE015399 Shigella flexneri 2a str. 301 section 362 of 412 of the comp
prokMSA_id:58037 AE015391 Shigella flexneri 2a str. 301 section 354 of 412 of the comp
prokMSA_id:58039 AE015055 Shigella flexneri 2a str. 301 section 18 of 412 of the compl
prokMSA_id:58360 NC_004337 Shigella flexneri 2a str. 301 complete genome
prokMSA_id:59285 AJ508775 Escherichia albertii strain LMG 20976T
prokMSA_id:63595 AY043392 Escherichia coli 
prokMSA_id:64392 AF403733 Escherichia coli C2 
prokMSA_id:65406 AF511430 Escherichia coli 
prokMSA_id:66566 AJ487021 amplicon H1
prokMSA_id:68952 AB035925 Escherichia coli O157:H7 clpB rrsG gltW rrlG rrfG kgtP genes
prokMSA_id:70983 AE005489 Escherichia coli O157:H7 EDL933 genome contig 3 of 3 section
prokMSA_id:71151 AE005632 Escherichia coli O157:H7 EDL933 genome contig 3 of 3 section
prokMSA_id:73514 V00348 E. coli operon rrnB encoding the . Also transfer specific Gl
prokMSA_id:73766 AJ408984 clone HuCA37
prokMSA_id:75507 AE016769 Escherichia coli CFT073 section 15 of 18 of the complete gen
prokMSA_id:75525 AE016764 Escherichia coli CFT073 section 10 of 18 of the complete gen
prokMSA_id:76155 NC_004431 Escherichia coli CFT073 complete genome
prokMSA_id:76445 AE016767 Escherichia coli CFT073 section 13 of 18 of the complete gen
prokMSA_id:76948 AE016770 Escherichia coli CFT073 section 16 of 18 of the complete gen
2.28.3.27.2.42797 OTU 2 seqs
prokMSA_id:9709 U88546 Salmonella paratyphi
prokMSA_id:9712 U92196 Salmonella bareilly str. Sb1
2.28.3.27.2.8626 OTU 1 seq
prokMSA_id:66560 AJ487029 amplicon H3
2.28.3.27.2.8942 OTU 1 seq
prokMSA_id:9675 AF075271 Alterococcus agarolyticus str. ADT3
2.28.3.27.2.9592 OTU 1 seq
prokMSA_id:9706 U90314 Salmonella blockley str. Sb1
2.28.3.27.2.9599 OTU 1 seq
prokMSA_id:9710 U88547 Salmonella paratyphi
2.28.3.27.2.9601 OTU 1 seq
prokMSA_id:9711 U92197 Salmonella agona str. Sa1
2.28.3.27.2.9604 OTU 1 seq
prokMSA_id:9714 U92195 Salmonella houten str. Sh1
2.28.3.27.2.9603 OTU 1 seq
prokMSA_id:9713 U92192 Salmonella chingola str. Sch1
2.28.3.27.2.9605 OTU 1 seq
prokMSA_id:9715 U92194 Salmonella waycross str. Swy1
2.28.3.27.3 S.ENTERITIDIS_SUBGROUP 7 seqs
2.28.3.27.3.42844 OTU 3 seqs
prokMSA_id:9749 AF025363 Citrobacter rodentium CDC 1843-73
prokMSA_id:34643 AB045730 Escherichia coli strain:MPEC EX-33
prokMSA_id:42416 AB045731 Escherichia coli strain:MPEC Y-69
2.28.3.27.3.9644 OTU 1 seq
prokMSA_id:9746 AB004746 Enterobacter sakazakii str. Ct2 JCM 1233
2.28.3.27.3.9664 OTU 1 seq
prokMSA_id:9753 X80676 Salmonella sp. str. ATCC 9712
2.28.3.27.3.9666 OTU 1 seq
prokMSA_id:9754 AF025364 Citrobacter sedlakii CDC 4696-86
2.28.3.27.3.9686 OTU 1 seq
prokMSA_id:9766 AF025370 Citrobacter amalonaticus CDC 9020-77
2.28.3.27.4 PECTOBACTERIUM-ERWINIA_SUBGROUP 58 seqs
2.28.3.27.4.1 PCB.CAROTOVORUM_BETAVASCULORUM_SUBGROUP 28 seqs
2.28.3.27.4.1.10105 OTU 1 seq
prokMSA_id:66725 AF373200 Pectobacterium chrysanthemi strain 572 ; -23S intergenic spa
2.28.3.27.4.1.1704 OTU 1 seq
prokMSA_id:79588 AF465797 Baumannia cicadellinicola 
2.28.3.27.4.1.33270 OTU 2 seqs
prokMSA_id:9802 Z96096 Brenneria paradisiaca LMG 2542
prokMSA_id:61198 AF520710 Dickeya paradisiaca 
2.28.3.27.4.1.34463 OTU 12 seqs
prokMSA_id:9787 U80199 Pectobacterium carotovorum subsp. wasabiae str. SR 91 ATCC 4
prokMSA_id:9788 AJ223408 Erwinia carotovora subsp. wasabiae ICMP 9121
prokMSA_id:9790 Z96090 Pectobacterium carotovorum subsp. atrosepticum LMG 2386
prokMSA_id:66732 AF373193 Pectobacterium carotovorum subsp. wasabiae strain 91 
prokMSA_id:66741 AF373182 Pectobacterium carotovorum subsp. atrosepticum strain 9205 ;
prokMSA_id:66743 AF373181 Pectobacterium carotovorum subsp. atrosepticum strain 9204 ;
prokMSA_id:66744 AF373180 Pectobacterium carotovorum subsp. atrosepticum strain 9201 ;
prokMSA_id:66745 AF373179 Pectobacterium carotovorum subsp. atrosepticum strain 558 ; 
prokMSA_id:66746 AF373177 Pectobacterium carotovorum subsp. atrosepticum strain 196 ; 
prokMSA_id:66747 AF373178 Pectobacterium carotovorum subsp. atrosepticum strain 31 ; -
prokMSA_id:66749 AF373176 Pectobacterium carotovorum subsp. atrosepticum strain GSPB 1
prokMSA_id:72670 AF373195 Pectobacterium carotovorum subsp. wasabiae strain 93 
2.28.3.27.4.1.34610 OTU 7 seqs
prokMSA_id:9798 U80200 Pectobacterium chrysanthemi ATCC 11663
prokMSA_id:9800 Z96093 Pectobacterium chrysanthemi LMG 2804
prokMSA_id:43232 AJ233412 Erwinia chrysanthemi strain DSM 4610
prokMSA_id:61197 AF520711 Dickeya zeae strain CFBP 2052 
prokMSA_id:66727 AF373199 Pectobacterium chrysanthemi strain 571 ; -23S intergenic spa
prokMSA_id:66748 AF373173 Pectobacterium chrysanthemi strain 340 
prokMSA_id:73843 AF373201 Pectobacterium chrysanthemi strain 573 ; -23S intergenic spa
2.28.3.27.4.1.42884 OTU 2 seqs
prokMSA_id:9792 Z96091 Pectobacterium carotovorum subsp. betavasculorum LMG 2466
prokMSA_id:73905 AF373184 Pectobacterium carotovorum subsp. betavasculorum strain 29 ;
2.28.3.27.4.1.9749 OTU 1 seq
prokMSA_id:9789 AJ223409 Erwinia cacticida
2.28.3.27.4.1.9782 OTU 1 seq
prokMSA_id:9794 U80198 Pectobacterium carotovorum subsp. betavasculorum ATCC 43762
2.28.3.27.4.1.9784 OTU 1 seq
prokMSA_id:9796 AJ233421 Leminorella grimontii DSM 5078
2.28.3.27.4.2 ER.AMYLOVORA_SUBGROUP 30 seqs
2.28.3.27.4.2.10401 OTU 1 seq
prokMSA_id:9810 AJ233417 Erwinia rhapontici DSM 4484
2.28.3.27.4.2.10390 OTU 1 seq
prokMSA_id:9807 AF130885 Pantoea toletana str. A4
2.28.3.27.4.2.10429 OTU 1 seq
prokMSA_id:9821 AF130971 Pantoea cedenensis str. A34
2.28.3.27.4.2.10454 OTU 1 seq
prokMSA_id:9838 AJ233414 Erwinia mallotivora str. AM1 DSM 4565
2.28.3.27.4.2.10437 OTU 1 seq
prokMSA_id:9827 AF024613 Pantoea agglomerans str. TAC.XII.93.2
2.28.3.27.4.2.42048 OTU 16 seqs
prokMSA_id:9831 U80195 Erwinia amylovora ATCC 15580
prokMSA_id:9832 AJ233410 Erwinia amylovora DSM 30165
prokMSA_id:9833 AJ010485 Erwinia amylovora str. Ea1/79
prokMSA_id:9834 AJ009930 Erwinia pyrifoliae str. Ep1/96
prokMSA_id:9835 Z96088 Erwinia amylovora LMG 2024
prokMSA_id:47069 X83265 E.amylovora 
prokMSA_id:69975 AF141891 Erwinia amylovora strain BC199 
prokMSA_id:70168 AF141896 Erwinia amylovora strain BC205 
prokMSA_id:70191 AF141894 Erwinia amylovora strain BC203 
prokMSA_id:70257 AF140340 Erwinia amylovora strain BC229 
prokMSA_id:71250 AF141893 Erwinia amylovora strain BC202 
prokMSA_id:71495 AF140337 Erwinia amylovora strain BC200 
prokMSA_id:72405 AF140339 Erwinia amylovora strain BC224 
prokMSA_id:72774 AF140338 Erwinia amylovora strain BC206 
prokMSA_id:73119 AF141895 Erwinia amylovora strain BC204 
prokMSA_id:73185 AF140341 Erwinia amylovora strain BC2280 
2.28.3.27.4.2.42587 OTU 2 seqs
prokMSA_id:9839 Z96085 Erwinia psidii LMG 7034
prokMSA_id:59997 AY131237 Erwinia papayae 
2.28.3.27.4.2.42894 OTU 5 seqs
prokMSA_id:9812 AF130903 Pantoea toletana str. A25
prokMSA_id:9814 AF130964 Pantoea toletana str. A82
prokMSA_id:9816 AF130968 Pantoea toletana str. A75
prokMSA_id:9819 AF130963 Pantoea toletana str. A64
prokMSA_id:9820 AF130965 Pantoea toletana str. A89
2.28.3.27.4.2.4757 OTU 1 seq
prokMSA_id:26973 AF290417 Erwinia herbicola 
2.28.3.27.4.2.4827 OTU 1 seq
prokMSA_id:20321 AF289542 Erwinia amylovora 
2.28.3.27.5 CIT.BRAAKII_SUBGROUP 15 seqs
2.28.3.27.5.10480 OTU 1 seq
prokMSA_id:9847 AB018593 str. TSA
2.28.3.27.5.10498 OTU 1 seq
prokMSA_id:9854 AF130893 Pantoea endophytica str. A14
2.28.3.27.5.10479 OTU 1 seq
prokMSA_id:9846 AB018592 str. JSA
2.28.3.27.5.16611 OTU 1 seq
prokMSA_id:38855 AF214639 Nitrogen-fixing CAN9B 
2.28.3.27.5.37190 OTU 4 seqs
prokMSA_id:9860 Y17655 Klebsiella oxytoca ATCC 13182
prokMSA_id:17402 U78183 Klebsiella oxytoca 
prokMSA_id:26295 U78184 Klebsiella oxytoca 
prokMSA_id:48721 AF129440 Klebsiella oxytoca 
2.28.3.27.5.41037 OTU 7 seqs
prokMSA_id:9840 AF025368 Citrobacter braakii CDC 080-58
prokMSA_id:9841 AF025365 Citrobacter freundii CDC 621-64
prokMSA_id:9843 AF025369 Citrobacter 'genomospecies 11' CDC 2970-59
prokMSA_id:9845 AJ233408 Citrobacter freundii DSM 30039
prokMSA_id:9852 AF025373 Citrobacter werkmanii CDC 0876-58
prokMSA_id:25734 AF463533 Citrobacter sp. TSA-1 
prokMSA_id:60690 AJ506794 Pantoea agglomerans strain MY1
2.28.3.27.6 PCB.CYPRIPEDII_SUBGROUP 2 seqs
2.28.3.27.6.10522 OTU 1 seq
prokMSA_id:9861 U80201 Pectobacterium cypripedii ATCC 29267
2.28.3.27.6.10524 OTU 1 seq
prokMSA_id:9863 AJ233413 Erwinia cypripedii DSM 3873
2.28.3.27.7 PN.AGGLOMERANS_SUBGROUP 19 seqs
2.28.3.27.7.10529 OTU 1 seq
prokMSA_id:9868 AB033602 unnamed organism
2.28.3.27.7.11255 OTU 1 seq
prokMSA_id:9947 AJ010486 Enterobacter pyrinus KCTC 2520
2.28.3.27.7.11444 OTU 1 seq
prokMSA_id:51850 AF364847 Pantoea ananatis strain LMG 20103 
2.28.3.27.7.2301 OTU 1 seq
prokMSA_id:63942 AF476101 Secondary endosymbiont of Antonina pretiosa and 23S genes 
2.28.3.27.7.34553 OTU 2 seqs
prokMSA_id:9870 AF130967 Pantoea oleae str. A66
prokMSA_id:9871 AF130969 Pantoea oleae str. A36
2.28.3.27.7.42047 OTU 8 seqs
prokMSA_id:9865 Z96081 Pantoea ananatis LMG 2665
prokMSA_id:9869 U80196 Pantoea ananatis ATCC 33244
prokMSA_id:9873 AB004758 Pantoea ananas JCM 6986
prokMSA_id:9874 U80209 Pantoea ananatis ATCC 19321
prokMSA_id:18430 AF364844 Pantoea ananatis strain LMG 20106 
prokMSA_id:18836 AF229453 Pantoea sp. 'Cibuni media isolate 74' 
prokMSA_id:21990 AF364846 Pantoea ananatis strain LMG 20104 
prokMSA_id:47117 AF364845 Pantoea ananatis strain LMG 20105 
2.28.3.27.7.42378 OTU 4 seqs
prokMSA_id:9944 U80208 Pantoea stewartii subsp. stewartii str. SS11 ATCC 8199
prokMSA_id:9946 Z96080 Pantoea stewartii subsp. stewartii str. SS11 LMG 2715
prokMSA_id:55560 AJ311838 Pantoea stewartii subsp. stewartii 23S and internal transcri
prokMSA_id:66728 AF373198 Pantoea stewartii subsp. stewartii strain GSPB 2626 
2.28.3.27.7.536 OTU 1 seq
prokMSA_id:27032 AF332546 Enterobacter sp. B96 
2.28.3.27.8 WIGGLESWORTHIA_SYMBIONT_SUBGROUP 31 seqs
2.28.3.27.8.10662 OTU 1 seq
prokMSA_id:74610 AJ245595 Endosymbiont of Camponotus socius clone 11/3
2.28.3.27.8.11297 OTU 1 seq
prokMSA_id:9965 AF077607 unnamed organism
2.28.3.27.8.11323 OTU 1 seq
prokMSA_id:9977 AJ011333 Yersinia sp. str. KM16
2.28.3.27.8.11354 OTU 1 seq
prokMSA_id:9985 M85270 symbiont of Sitophilus zeamais
2.28.3.27.8.11358 OTU 1 seq
prokMSA_id:9987 AF005235 str. SFr
2.28.3.27.8.12417 OTU 1 seq
prokMSA_id:60411 AF495758 Candidatus Blochmannia pennsylvanicus 
2.28.3.27.8.13946 OTU 1 seq
prokMSA_id:53447 AF263560 Secondary endosymbiont of Calophya schini ; intergenic space
2.28.3.27.8.14033 OTU 1 seq
prokMSA_id:39049 AJ245591 Endosymbiont of Camponotus abdominalis clone 4-2
2.28.3.27.8.14702 OTU 1 seq
prokMSA_id:52942 AF263558 Secondary endosymbiont of Blastopsylla occidentalis ; interg
2.28.3.27.8.15187 OTU 1 seq
prokMSA_id:53659 AF263556 Secondary endosymbiont of Aphalaroida inermis ; intergenic s
2.28.3.27.8.20352 OTU 1 seq
prokMSA_id:79106 AF465795 Baumannia cicadellinicola 
2.28.3.27.8.2267 OTU 1 seq
prokMSA_id:63934 AF476110 Secondary endosymbiont of Vryburgia amaryllidis and 23S gene
2.28.3.27.8.2277 OTU 1 seq
prokMSA_id:63938 AF476106 Secondary endosymbiont of Melanococcus albizziae and 23S gen
2.28.3.27.8.2280 OTU 1 seq
prokMSA_id:63939 AF476100 Secondary endosymbiont of Amonostherium lichtensioides and 2
2.28.3.27.8.2299 OTU 1 seq
prokMSA_id:63941 AF476105 Secondary endosymbiont of Erium globosum and 23S genes 
2.28.3.27.8.30875 OTU 2 seqs
prokMSA_id:20298 AF286127 Secondary endosymbiont of Paratrioza cockerelli 
prokMSA_id:54828 AF263557 Secondary endosymbiont of cockerelli ; intergenic spacer com
2.28.3.27.8.31581 OTU 3 seqs
prokMSA_id:9961 X92552 symbiont of Camponotus rufipes
prokMSA_id:9974 X92549 symbiont of Camponotus floridanus
prokMSA_id:21535 AJ245597 Endosymbiont of Camponotus rufipes clone 13/5
2.28.3.27.8.34264 OTU 2 seqs
prokMSA_id:9953 X92550 symbiont of Camponotus herculeanus
prokMSA_id:40380 AJ250715 Camponotus herculeanus endosymbiont strain USA
2.28.3.27.8.42316 OTU 2 seqs
prokMSA_id:55799 AB083059 Endosymbiont of Parabdella sp
prokMSA_id:60304 AB083058 Endosymbiont of Placobdelloides siamensis 
2.28.3.27.8.42399 OTU 2 seqs
prokMSA_id:20928 AJ245598 Endosymbiont of Camponotus pennsylvanicus clone 14/7
prokMSA_id:42640 AJ245594 Endosymbiont of Camponotus castaneus clone 8/1
2.28.3.27.8.42757 OTU 2 seqs
prokMSA_id:63940 AF476103 Secondary endosymbiont of Dysmicoccus brevipes and 23S genes
prokMSA_id:63945 AF476104 Secondary endosymbiont of Dysmicoccus neobrevipes and 23S ge
2.28.3.27.8.4663 OTU 1 seq
prokMSA_id:27576 AF286128 Secondary endosymbiont of Psylla ?floccosa 
2.28.3.27.8.846 OTU 1 seq
prokMSA_id:48707 AJ245596 Endosymbiont of Camponotus balzani clone 12/1
2.28.3.27.8.8468 OTU 1 seq
prokMSA_id:36435 AB064518 Buchnera aphidicola Yamatocallis hirayamae isolate:#567 seco
2.28.3.27.9 PCB.CAROTOVORUM_CAROTOVORUM_SUBGROUP 18 seqs
2.28.3.27.9.10141 OTU 1 seq
prokMSA_id:66738 AF373186 Pectobacterium carotovorum subsp. carotovorum strain GSPB 28
2.28.3.27.9.11387 OTU 1 seq
prokMSA_id:9994 Z14096 str. BEV
2.28.3.27.9.11517 OTU 1 seq
prokMSA_id:38096 AY048889 Q3-24C22 
2.28.3.27.9.39452 OTU 15 seqs
prokMSA_id:9988 U80197 Pectobacterium carotovorum subsp. carotovorum ATCC 15713
prokMSA_id:9989 Z96089 Pectobacterium carotovorum subsp. carotovorum LMG 2404
prokMSA_id:9991 AJ223407 Pectobacterium carotovorum subsp. odoriferum LMG 17566
prokMSA_id:23248 AJ233411 Erwinia carotovora strain DSM 30168
prokMSA_id:66723 AF373203 Pectobacterium chrysanthemi strain GSPB 1406 ; -23S intergen
prokMSA_id:66736 AF373189 Pectobacterium carotovorum subsp. carotovorum strain E161 ; 
prokMSA_id:66737 AF373188 Pectobacterium carotovorum subsp. carotovorum strain E155 ; 
prokMSA_id:66739 AF373187 Pectobacterium carotovorum subsp. carotovorum strain 441 ; -
prokMSA_id:66740 AF373185 Pectobacterium carotovorum subsp. carotovorum strain 21 ; -2
prokMSA_id:70490 AF373183 Pectobacterium carotovorum subsp. atrosepticum strain E1 ; -
prokMSA_id:72751 AF373174 Pectobacterium chrysanthemi strain GSPB 413 
prokMSA_id:73219 AF373190 Pectobacterium carotovorum subsp. odoriferum strain 1645-1 
prokMSA_id:73789 AF373192 Pectobacterium carotovorum subsp. odoriferum strain 1880 
prokMSA_id:74117 AF373191 Pectobacterium carotovorum subsp. odoriferum strain 1878 
prokMSA_id:82434 AY207085 Pectobacterium carotovorum subsp. brasiliensis strain 371 
2.28.3.27.10 SER.MARCESCENS_SUBGROUP 33 seqs
2.28.3.27.10.17161 OTU 1 seq
prokMSA_id:10001 U20275 str. DP
2.28.3.27.10.31626 OTU 2 seqs
prokMSA_id:9998 U20274 str. CA
prokMSA_id:10002 U20276 str. IN
2.28.3.27.10.42642 OTU 29 seqs
prokMSA_id:10006 AJ233431 Serratia marcescens DSM 30121
prokMSA_id:10032 AF124035 Serratia marcescens
prokMSA_id:10033 AF124036 Serratia marcescens
prokMSA_id:10034 AF124037 Serratia marcescens
prokMSA_id:10035 AF124038 Serratia marcescens
prokMSA_id:10036 AF124040 Serratia marcescens
prokMSA_id:10037 AF124042 Serratia marcescens
prokMSA_id:16603 AJ296310 Serratia marcescens isolate ZO1-A
prokMSA_id:20073 AF289497 sheep mite Caithness 8 
prokMSA_id:20981 AF289502 sheep mite Caithness 72 
prokMSA_id:30637 AJ296308 Serratia marcescens isolate CPO14CU
prokMSA_id:31283 AJ297950 Serratia marcescens isolate HO2-A
prokMSA_id:35882 AF289498 sheep mite Caithness 11 
prokMSA_id:41097 AF286874 Serratia marcescens IRBG 501 
prokMSA_id:42000 AB061685 Serratia marcescens 
prokMSA_id:43455 AJ297946 Serratia marcescens isolate HO1-A
prokMSA_id:46431 AJ302156 Serratia marcescens isolate RO1-A
prokMSA_id:54081 AJ296309 Serratia marcescens isolate WO1-A
prokMSA_id:54306 AF286873 Serratia marcescens IRBG 500 
prokMSA_id:56115 AY043387 Serratia marcescens strain AU1209 
prokMSA_id:56472 AY043389 Serratia marcescens strain AU1388 
prokMSA_id:59692 AB091837 Pseudomonas fluorescens 
prokMSA_id:60369 AF513469 Enterobacteriaceae PH31 
prokMSA_id:61809 AF529356 gamma clone CLs91 
prokMSA_id:61810 AF529354 gamma clone CLs85 
prokMSA_id:61815 AF529347 gamma clone CLs114 
prokMSA_id:61827 AF529337 gamma clone CLi53 
prokMSA_id:62411 AF529100 gamma clone FTL260 
prokMSA_id:63599 AY043386 Serratia marcescens strain AU736 
2.28.3.27.10.4295 OTU 1 seq
prokMSA_id:65407 AF511431 Serratia marcescens 
2.28.3.27.11 KLEBSIELLA_SUBGROUP 59 seqs
2.28.3.27.11.2 ENB.ASBURIAE_SUBGROUP 30 seqs
2.28.3.27.11.2.17271 OTU 1 seq
prokMSA_id:10042 Z96077 Enterobacter nimipressuralis LMG 10245
2.28.3.27.11.2.17335 OTU 1 seq
prokMSA_id:10085 AJ232240 str. SS-Unknown-1129
2.28.3.27.11.2.17316 OTU 1 seq
prokMSA_id:10066 AJ233437 Tatumella ptyseos DSM 5000
2.28.3.27.11.2.17344 OTU 1 seq
prokMSA_id:10092 AB004747 Enterobacter intermedius str. Gavini E 86 JCM 1238
2.28.3.27.11.2.17937 OTU 1 seq
prokMSA_id:10115 AJ233424 Pragia fontium DSM 5563
2.28.3.27.11.2.17934 OTU 1 seq
prokMSA_id:10112 Y17664 Klebsiella sp. str. BEC441
2.28.3.27.11.2.17935 OTU 1 seq
prokMSA_id:10113 AB021400 Pseudomonas flectens ATCC 12775
2.28.3.27.11.2.20765 OTU 1 seq
prokMSA_id:77919 AB098582 Enterobacter sp. TUT1014 
2.28.3.27.11.2.3527 OTU 1 seq
prokMSA_id:65355 AB086230 Cedecea neteri 
2.28.3.27.11.2.39516 OTU 3 seqs
prokMSA_id:51158 AF005656 Gamma MS-1 complete 
prokMSA_id:51811 AJ277977 Leclercia adecarboxylata strain WG 184
prokMSA_id:71494 AJ276393 Leclercia adecarboxylata strain LBV 449
2.28.3.27.11.2.39879 OTU 12 seqs
prokMSA_id:10052 AJ233402 Buttiauxella ferragutiae DSM 9390
prokMSA_id:10053 AJ233403 Buttiauxella gaviniae DSM 9393
prokMSA_id:10054 AJ233404 Buttiauxella izardii DSM 9397
prokMSA_id:10055 AJ233405 Buttiauxella noackiae DSM 9401
prokMSA_id:10056 AJ233406 Buttiauxella warmboldiae DSM 9404
prokMSA_id:45264 AF227832 Pantoea sp. 57917 
prokMSA_id:69815 AJ293684 Buttiauxella agrestis strain S3/3-203
prokMSA_id:69978 AJ293687 Buttiauxella noackiae strain BR 626
prokMSA_id:70049 AJ293689 Buttiauxella noackiae strain NSW11T ATCC 51607T
prokMSA_id:73164 AJ293685 Buttiauxella agrestis strain CDC 1176-81T ATCC 33320T
prokMSA_id:73465 AF227860 Pantoea sp. 57916 
prokMSA_id:74207 AJ293683 Buttiauxella sp. LBV 449 
2.28.3.27.11.2.42654 OTU 2 seqs
prokMSA_id:10050 AJ233400 Buttiauxella agrestis DSM 4586
prokMSA_id:10051 AJ233401 Buttiauxella brennerae DSM 9396
2.28.3.27.11.2.42712 OTU 3 seqs
prokMSA_id:10079 AF130892 Pantoea endophytica str. A13
prokMSA_id:10082 AF130958 Pantoea endophytica str. A6
prokMSA_id:10102 AF130960 Pantoea agglomerans str. A8
2.28.3.27.11.2.8306 OTU 1 seq
prokMSA_id:80910 AJ508301 Enterobacter kobei strain CIP 105566
2.28.3.27.11.3 K.PLANTICOLA_SUBGROUP 5 seqs
2.28.3.27.11.3.19833 OTU 1 seq
prokMSA_id:24848 AF214640 Nitrogen-fixing CANF3 
2.28.3.27.11.3.2304 OTU 1 seq
prokMSA_id:63943 AF476099 Secondary endosymbiont of Australicoccus grevilleae and 23S 
2.28.3.27.11.3.39152 OTU 3 seqs
prokMSA_id:10124 Y17658 Klebsiella terrigena ATCC 33257
prokMSA_id:10125 Y17670 Klebsiella terrigena str. SW4
prokMSA_id:21806 AF129442 Klebsiella terrigena strain ATCC 33257T 
2.28.3.27.11.4 K.PNEUMONIAE_SUBGROUP 7 seqs
2.28.3.27.11.4.13729 OTU 1 seq
prokMSA_id:37741 AF214641 Nitrogen-fixing CC262C 
2.28.3.27.11.4.15121 OTU 1 seq
prokMSA_id:77150 AY167970 Swine manure 37-11 
2.28.3.27.11.4.17998 OTU 1 seq
prokMSA_id:10139 AF010251 Calymmatobacterium granulomatis str. KH 22
2.28.3.27.11.4.18019 OTU 1 seq
prokMSA_id:10140 Z96079 Enterobacter dissolvens LMG 2683
2.28.3.27.11.4.18562 OTU 1 seq
prokMSA_id:77675 AB088049 Citrobacter sp. VA53 
2.28.3.27.11.4.2399 OTU 1 seq
prokMSA_id:63980 AY114159 Klebsiella pneumoniae 
2.28.3.27.11.4.6929 OTU 1 seq
prokMSA_id:73579 AF250285 Klebsiella singaporensis LX3 
2.28.3.27.11.99 VARIOUS 17 seqs
2.28.3.27.11.99.39346 OTU 17 seqs
prokMSA_id:10048 AB004749 Enterobacter amnigenus JCM 1237
prokMSA_id:10126 Y17659 Klebsiella planticola ATCC 33531
prokMSA_id:10127 X93215 Klebsiella planticola DSM 3069
prokMSA_id:10128 Y17662 Klebsiella ornithinolytica str. 590681
prokMSA_id:10129 Y17663 Klebsiella planticola str. 7444
prokMSA_id:10130 Y17666 Klebsiella ornithinolytica str. FSK9555
prokMSA_id:10131 X93216 Klebsiella planticola str. DR3
prokMSA_id:10132 AF175281 Klebsiella Cd-1 str. Cd-1
prokMSA_id:25616 AF129443 Klebsiella planticola strain ATCC 33531T 
prokMSA_id:26797 AJ318112 gamma clone BIci26
prokMSA_id:35041 AB004756 Klebsiella ornithinolytica 
prokMSA_id:38339 AF129441 Klebsiella ornithinolytica strain ATCC 31898 
prokMSA_id:42955 AF129444 Klebsiella trevisanii strain ATCC 33558T 
prokMSA_id:49258 U78182 Klebsiella ornithinolytica 
prokMSA_id:65398 AF511435 Serratia fonticola 
prokMSA_id:73261 AF181574 Klebsiella planticola 
prokMSA_id:74012 AJ251467 Klebsiella ornithinolytica strain JCM6096T
2.28.3.27.12 SER.FICARIA_SUBGROUP 40 seqs
2.28.3.27.12.14811 OTU 1 seq
prokMSA_id:45752 AJ279055 Serratia plymuthica strain RK
2.28.3.27.12.18098 OTU 1 seq
prokMSA_id:10175 AB009954 str. L101
2.28.3.27.12.18112 OTU 1 seq
prokMSA_id:10180 AF015258 Aquamonas haywardensis str. EG121 CDC 2404-94
2.28.3.27.12.2306 OTU 1 seq
prokMSA_id:63944 AF476102 Secondary endosymbiont of Cyphonococcus alpinus and 23S gene
2.28.3.27.12.31735 OTU 6 seqs
prokMSA_id:10162 M27040 symbiont of symbiont S of Acyrthosiphon pisum
prokMSA_id:26800 AB033778 Secondary symbiont of Acyrthosiphon pisum 
prokMSA_id:27697 AB033779 Secondary symbiont of Acyrthosiphon pisum 
prokMSA_id:31810 AF293617 Secondary symbiont -R of Acyrthosiphon pisum rrs 
prokMSA_id:33363 AB033777 Secondary symbiont of Acyrthosiphon pisum 
prokMSA_id:37966 AF293624 Secondary symbiont -R of Uroleucon caligatum rrs 
2.28.3.27.12.3622 OTU 1 seq
prokMSA_id:65383 AF511524 Serratia sp. BuxOS3 
2.28.3.27.12.41946 OTU 4 seqs
prokMSA_id:10169 AJ233429 Serratia fonticola DSM 4576
prokMSA_id:33276 AJ279002 Serratia fonticola strain IB4
prokMSA_id:34707 AF286869 Serratia fonticola LMG 7882 
prokMSA_id:82090 AY236502 Serratia fonticola UTAD54 
2.28.3.27.12.42521 OTU 2 seqs
prokMSA_id:52638 AJ279049 Serratia proteamaculans quinovora strain CP6e
prokMSA_id:52641 AJ279045 Serratia proteamaculans quinovora strain CP6a
2.28.3.27.12.42748 OTU 23 seqs
prokMSA_id:10163 AB004745 Serratia ficaria JCM 1241
prokMSA_id:10167 AJ233427 Serratia entomophila DSM 12358
prokMSA_id:10168 AJ233428 Serratia ficaria DSM 4569
prokMSA_id:10170 AJ233430 Serratia grimesii DSM 30063
prokMSA_id:10171 AJ233432 Serratia odorifera DSM 4582
prokMSA_id:10173 AJ233434 Serratia proteamaculans DSM 4543
prokMSA_id:10174 AJ233435 Serratia proteamaculans DSM 4597
prokMSA_id:10181 U93263 Aranicola proteolyticus
prokMSA_id:10182 AB015553 str. BD3-12
prokMSA_id:20233 AF286872 Serratia plymuthica DSM 4540 
prokMSA_id:20361 AJ310680 clone 228
prokMSA_id:24212 AF286868 Serratia grimesii LMG 7883 
prokMSA_id:24791 AJ279051 Serratia proteamaculans quinovora strain CP6g
prokMSA_id:27899 AJ306725 Serratia liquefaciens strain CIP 103238T
prokMSA_id:30445 AJ302155 Enterobacteriaceae sp. JM983 isolate JM983
prokMSA_id:30517 AJ310681 clone 244
prokMSA_id:30806 AJ279050 Serratia proteamaculans quinovora strain CP6f
prokMSA_id:30929 AJ279054 Serratia ficaria strain NCTC 12148
prokMSA_id:41789 AJ310682 clone 231
prokMSA_id:43863 AF286870 Serratia odorifera DSM 4582 
prokMSA_id:47869 AJ279048 Serratia proteamaculans quinovora strain CP6d
prokMSA_id:64290 AY040208 Serratia proteamaculans 
prokMSA_id:73291 AF286867 Serratia proteamaculans subsp. quinovora LMG 7887 
2.28.3.27.13 XENORHABDUS_SUBGROUP 93 seqs
2.28.3.27.13.1 BEMISIA_SYMBIONT 14 seqs
2.28.3.27.13.1.32162 OTU 6 seqs
prokMSA_id:10185 Z11926 symbiont of Bemisia tabaci sweet potato whitefly
prokMSA_id:19360 AF293621 Secondary symbiont -T of Uroleucon ambrosiae isolate T- rrs 
prokMSA_id:24843 AF293626 Secondary symbiont -T of Uroleucon rudbeckiae rrs 
prokMSA_id:35772 AF293622 Secondary symbiont -T of Uroleucon ambrosiae isolate T- rrs 
prokMSA_id:42775 AJ297720 gamma DAC-2000 
prokMSA_id:50515 AF293616 Secondary symbiont -T of Acyrthosiphon pisum rrs 
2.28.3.27.13.1.37464 OTU 8 seqs
prokMSA_id:17365 AF400472 Secondary endosymbiont of Bemisia tabaci clone CALA 
prokMSA_id:20242 AF400471 Secondary endosymbiont of Bemisia tabaci clone AZB 
prokMSA_id:28464 AF400476 Secondary endosymbiont of Bemisia tabaci clone JATPR 
prokMSA_id:36537 AF400479 Secondary endosymbiont of Bemisia tabaci clone TANZ3-1 
prokMSA_id:43876 AF400475 Secondary endosymbiont of Bemisia tabaci clone ISR5 
prokMSA_id:50332 AF400477 Secondary endosymbiont of Bemisia tabaci clone MEX4 
prokMSA_id:51366 AF400470 Secondary endosymbiont of Bemisia tabaci clone AZA 
prokMSA_id:51838 AF400473 Secondary endosymbiont of Bemisia tabaci clone CULMX 
2.28.3.27.13.2 SER.RUBIDAEA_SUBGROUP 3 seqs
2.28.3.27.13.2.18121 OTU 1 seq
prokMSA_id:10187 AF053975 Edwardsiella tarda
2.28.3.27.13.2.34294 OTU 2 seqs
prokMSA_id:10186 AB004751 Serratia rubidaea str. Ewing 2199- JCM 1240
prokMSA_id:10189 AJ233436 Serratia rubidaea str. Ewing 2199- DSM 4480
2.28.3.27.13.3 BN.RUBRIFACIENS_SUBGROUP 9 seqs
2.28.3.27.13.3.2274 OTU 1 seq
prokMSA_id:63937 AF476108 Secondary endosymbiont of Planococcus ficus and 23S genes 
2.28.3.27.13.3.23614 OTU 2 seqs
prokMSA_id:10201 Z96097 Brenneria salicis LMG 2698
prokMSA_id:46931 AJ233419 Erwinia salicis strain DSM 30166
2.28.3.27.13.3.32170 OTU 3 seqs
prokMSA_id:10197 U80207 Brenneria rubrifaciens ATCC 29291
prokMSA_id:10198 Z96098 Brenneria rubrifaciens LMG 2709
prokMSA_id:51229 AJ233418 Erwinia rubrifaciens strain DSM 4483
2.28.3.27.13.3.34307 OTU 3 seqs
prokMSA_id:10196 AJ223469 Brenneria quercina LMG 2724
prokMSA_id:10199 U80210 Brenneria salicis ATCC 15712
prokMSA_id:10200 AJ233416 Brenneria quercina DSM 4561
2.28.3.27.13.4 P.VULGARIS_SUBGROUP 30 seqs
2.28.3.27.13.4.15670 OTU 1 seq
prokMSA_id:77224 AY167939 Swine manure RT-3C 
2.28.3.27.13.4.18662 OTU 1 seq
prokMSA_id:10204 U91786 unnamed organism
2.28.3.27.13.4.18661 OTU 1 seq
prokMSA_id:10203 U91515 Phlomobacter fragariae str. france
2.28.3.27.13.4.18676 OTU 1 seq
prokMSA_id:10211 U20278 str. OR
2.28.3.27.13.4.18677 OTU 1 seq
prokMSA_id:10212 U20273 str. AM
2.28.3.27.13.4.21219 OTU 1 seq
prokMSA_id:40697 AY043168 Morganella morganii 
2.28.3.27.13.4.34116 OTU 5 seqs
prokMSA_id:18267 AF400480 Secondary endosymbiont of Bemisia tabaci clone TANZ3-2 
prokMSA_id:33418 AF400481 Secondary endosymbiont of Bemisia tabaci clone UG26 
prokMSA_id:39170 AB038366 Arsenophonus endosymbiont of Diaphorina citri 
prokMSA_id:54964 AF263562 Secondary endosymbiont of Heteropsylla texana ; intergenic s
prokMSA_id:73583 AY057392 Candidatus Phlomobacter betae complete 
2.28.3.27.13.4.42503 OTU 16 seqs
prokMSA_id:10205 X07652 Proteus vulgaris IFAM 1731
prokMSA_id:10206 AJ233425 Proteus vulgaris DSM 30118
prokMSA_id:18414 AJ301683 Proteus vulgaris strain CIP103181T
prokMSA_id:19524 AJ301682 Proteus mirabilis strain CIP103181T
prokMSA_id:19687 AB079370 Proteus mirabilis 
prokMSA_id:27167 AF008582 Proteus mirabilis 
prokMSA_id:75554 AY167943 Swine manure RT-4D 
prokMSA_id:75572 AY167938 Swine manure RT-3B 
prokMSA_id:75783 AY167934 Swine manure RT-2B 
prokMSA_id:76116 AY167940 Swine manure RT-4A 
prokMSA_id:76139 AY167935 Swine manure RT-2C 
prokMSA_id:76398 AY167953 Swine manure RT-13A 
prokMSA_id:76558 AY167936 Swine manure RT-2D 
prokMSA_id:76689 AY167951 Swine manure RT-10A 
prokMSA_id:76776 AY167942 Swine manure RT-4C 
prokMSA_id:76918 AY167947 Swine manure RT-6A 
2.28.3.27.13.4.6452 OTU 1 seq
prokMSA_id:21132 AF286129 from Aleurodicus dugesii 
2.28.3.27.13.4.7956 OTU 1 seq
prokMSA_id:52003 AF400478 Secondary endosymbiont of Bemisia tabaci clone TANZ15 
2.28.3.27.13.4.9814 OTU 1 seq
prokMSA_id:37204 J01874 Proteus vulgaris 
2.28.3.27.13.5 XEN.NEMATOPHILUS_SUBGROUP 37 seqs
2.28.3.27.13.5.11372 OTU 1 seq
prokMSA_id:81918 AY217761 Photorhabdus asymbiotica 
2.28.3.27.13.5.18757 OTU 1 seq
prokMSA_id:10255 Z76739 Xenorhabdus japonicus str. SK-1
2.28.3.27.13.5.19339 OTU 1 seq
prokMSA_id:10301 D78008 Xenorhabdus japonicus str. SK-1 IAM 14265
2.28.3.27.13.5.21047 OTU 1 seq
prokMSA_id:41267 AF293620 Secondary symbiont -U of Uroleucon aenum rrs 
2.28.3.27.13.5.25550 OTU 5 seqs
prokMSA_id:10217 Z76740 Photorhabdus luminescens str. Tn-5*2
prokMSA_id:10225 Z76752 Photorhabdus luminescens ATCC 43949
prokMSA_id:10226 Z76753 Photorhabdus luminescens ATCC 43952
prokMSA_id:10227 Z76754 Photorhabdus luminescens ATCC 43951
prokMSA_id:10228 Z76755 Photorhabdus luminescens ATCC 43950
2.28.3.27.13.5.26408 OTU 2 seqs
prokMSA_id:10240 Z76737 Xenorhabdus nematophilus str. N2-4
prokMSA_id:10241 Z76738 Xenorhabdus nematophilus str. RIOBRAVIS
2.28.3.27.13.5.32956 OTU 2 seqs
prokMSA_id:10244 D78007 Xenorhabdus bovienii ATCC 35271
prokMSA_id:10246 X82252 Xenorhabdus bovienii DSM 4766
2.28.3.27.13.5.32957 OTU 2 seqs
prokMSA_id:10245 D78010 Xenorhabdus poinarii DSM 4768
prokMSA_id:10256 X82253 Xenorhabdus poinarii DSM 4768
2.28.3.27.13.5.33200 OTU 8 seqs
prokMSA_id:10219 Z76741 Photorhabdus luminescens str. V6-1
prokMSA_id:10222 Z76744 Photorhabdus luminescens str. Brecon
prokMSA_id:10224 Z76749 Photorhabdus luminescens str. Q614
prokMSA_id:10231 Y17605 Photorhabdus luminescens str. LN2
prokMSA_id:17167 AJ295161 Photorhabdus luminescens subsp. laumondii strain TUR1
prokMSA_id:46111 AJ007404 Photorhabdus luminescens subsp. laumondii strain TT01
prokMSA_id:72527 AJ007359 Photorhabdus luminescens subsp. akhurstii strain FRG0 
prokMSA_id:74806 AJ295162 Photorhabdus luminescens subsp. laumondii strain TUR2
2.28.3.27.13.5.33474 OTU 6 seqs
prokMSA_id:10257 X82249 Photorhabdus luminescens DSM 3369
prokMSA_id:10258 D78004 Photorhabdus luminescens ATCC 29304
prokMSA_id:10264 Z76746 Photorhabdus luminescens str. WX2
prokMSA_id:10265 Z76747 Photorhabdus luminescens str. WX11
prokMSA_id:10266 Z76750 Photorhabdus luminescens str. Mge1
prokMSA_id:10267 Z76751 Photorhabdus luminescens str. Meg2
2.28.3.27.13.5.35220 OTU 2 seqs
prokMSA_id:10298 X82254 Xenorhabdus beddingii DSM 4764
prokMSA_id:10299 D78006 Xenorhabdus beddingii DSM 4764
2.28.3.27.13.5.37524 OTU 3 seqs
prokMSA_id:10282 X82250 Photorhabdus luminescens str. Ehlers HSH2
prokMSA_id:10293 Z76748 Photorhabdus luminescens str. PE 87.3
prokMSA_id:30793 AJ007405 Photorhabdus temperata strain XINach
2.28.3.27.13.5.41101 OTU 3 seqs
prokMSA_id:10239 X82251 Xenorhabdus nematophilus DSM 3370
prokMSA_id:10300 D78009 Xenorhabdus nematophilus ATCC 19061
prokMSA_id:63456 AF522294 Xenorhabdus nematophila complete 
2.28.3.27.14 YERSINIA_SUBGROUP 73 seqs
2.28.3.27.14.1 BN.NIGRIFLUENS_SUBGROUP 5 seqs
2.28.3.27.14.1.19341 OTU 1 seq
prokMSA_id:10303 AJ233422 Obesumbacterium proteus DSM 2777
2.28.3.27.14.1.31925 OTU 3 seqs
prokMSA_id:10307 U80203 Brenneria nigrifluens ATCC 13028
prokMSA_id:10308 Z96095 Brenneria nigrifluens LMG 2694
prokMSA_id:45637 AJ233415 Erwinia nigrifluens strain DSM 30175
2.28.3.27.14.1.7819 OTU 1 seq
prokMSA_id:28528 AB067723 Megacopta punctatissima symbiont 
2.28.3.27.14.2 ER.AMERICANA_SUBGROUP 14 seqs
2.28.3.27.14.2.19369 OTU 1 seq
prokMSA_id:10315 U90758 Rahnella genosp. 3 DSM 30078
2.28.3.27.14.2.30086 OTU 3 seqs
prokMSA_id:28751 AB064516 Buchnera aphidicola Yamatocallis tokyoensis isolate:#526 sec
prokMSA_id:43984 AB064515 Buchnera aphidicola Yamatocallis tokyoensis isolate:#525 sec
prokMSA_id:47317 AB064517 Buchnera aphidicola Yamatocallis tokyoensis isolate:#566 sec
2.28.3.27.14.2.41104 OTU 3 seqs
prokMSA_id:10309 X79937 Rahnella aquatilis str. 2-87
prokMSA_id:10311 U88435 Rahnella 'CDC 21234' CDC 21234
prokMSA_id:10322 X79940 Rahnella aquatilis str. 3-88; 334
2.28.3.27.14.2.41131 OTU 4 seqs
prokMSA_id:10310 U88434 Rahnella 'CDC 1-576' CDC 1-576
prokMSA_id:10312 U88437 Rahnella 'CDC 658-79' CDC 658-79
prokMSA_id:10313 U88438 Rahnella 'CDC Bonn7' CDC Bonn7
prokMSA_id:10314 U88439 Rahnella 'CDC Italy 2383' str. 2383 CDC Italy
2.28.3.27.14.2.41140 OTU 2 seqs
prokMSA_id:10316 AB004762 unnamed organism
prokMSA_id:51726 AJ415576 Rahnella sp. 0011 836 strain 0011 836
2.28.3.27.14.2.5504 OTU 1 seq
prokMSA_id:27646 AJ290038 GKS2-91 
2.28.3.27.14.3 RAH.AQUATILIS_SUBGROUP 6 seqs
2.28.3.27.14.3.27009 OTU 6 seqs
prokMSA_id:10331 X79936 Rahnella aquatilis str. 334
prokMSA_id:10333 U88436 Rahnella 'CDC 2987-79' CDC 2987-79
prokMSA_id:10334 U90757 Rahnella aquatilis CDC 1327-79
prokMSA_id:10335 AJ233426 Rahnella aquatilis DSM 4594
prokMSA_id:10336 X79938 Rahnella aquatilis str. 339
prokMSA_id:10340 X79939 Rahnella aquatilis ATCC 33989
2.28.3.27.14.4 YER.ENTEROCOLITICA_SUBGROUP 4 seqs
2.28.3.27.14.4.1564 OTU 1 seq
prokMSA_id:25922 AF293619 Secondary symbiont -U of Macrosiphoniella ludovicianae rrs 
2.28.3.27.14.4.18527 OTU 1 seq
prokMSA_id:77662 AB074625 gamma clone:APe2_17
2.28.3.27.14.4.19439 OTU 1 seq
prokMSA_id:10343 AJ233407 Budvicia aquatica DSM 5075
2.28.3.27.14.4.4293 OTU 1 seq
prokMSA_id:66062 AF461011 Morganella morganii strain M567 
2.28.3.27.14.5 YER.PESTIS_SUBGROUP 28 seqs
2.28.3.27.14.5.19484 OTU 1 seq
prokMSA_id:10363 X75275 Yersinia ruckeri ATCC 29473
2.28.3.27.14.5.19551 OTU 1 seq
prokMSA_id:10394 X75277 Yersinia aldovae ATCC 35236
2.28.3.27.14.5.2045 OTU 1 seq
prokMSA_id:41648 AF366379 Yersinia frederiksenii 
2.28.3.27.14.5.26596 OTU 2 seqs
prokMSA_id:49541 AB064513 Buchnera aphidicola Yamatocallis tokyoensis isolate:#207 sec
prokMSA_id:50763 AB064514 Buchnera aphidicola Yamatocallis tokyoensis isolate:#317 sec
2.28.3.27.14.5.33233 OTU 11 seqs
prokMSA_id:10366 Z21939 Yersinia pseudotuberculosis str. Serotype III 1B1 B28 W.W.
prokMSA_id:18014 AF366375 Yersinia pseudotuberculosis 
prokMSA_id:22310 AF365946 Yersinia pseudotuberculosis strain 257 
prokMSA_id:25758 AF365947 Yersinia pseudotuberculosis strain 151 
prokMSA_id:35507 AF365935 Yersinia pseudotuberculosis strain 354 
prokMSA_id:43147 AF365940 Yersinia pseudotuberculosis strain 83 
prokMSA_id:43494 AF365939 Yersinia pseudotuberculosis strain 274 
prokMSA_id:51804 AF365938 Yersinia pseudotuberculosis strain 2660 
prokMSA_id:52382 AF365942 Yersinia pseudotuberculosis strain 212 
prokMSA_id:57521 AJ414141 Yersinia pestis strain CO92 complete genome; segment 1/20
prokMSA_id:74815 AF282307 Yersinia pseudotuberculosis 
2.28.3.27.14.5.41125 OTU 9 seqs
prokMSA_id:22202 AF365934 Yersinia pseudotuberculosis strain 2883 
prokMSA_id:23050 AF365948 Yersinia pseudotuberculosis strain R 708 LY 
prokMSA_id:23716 AF365950 Yersinia pseudotuberculosis strain R 1505 
prokMSA_id:28126 AF365945 Yersinia pseudotuberculosis strain 1147 
prokMSA_id:30561 AF365943 Yersinia pseudotuberculosis strain 204 
prokMSA_id:37543 AF365937 Yersinia pseudotuberculosis strain 49 
prokMSA_id:38612 AF365936 Yersinia pseudotuberculosis strain Kuratani-2 
prokMSA_id:42238 AF365941 Yersinia pseudotuberculosis strain 51 
prokMSA_id:46996 AF365949 Yersinia pseudotuberculosis strain 6088 
2.28.3.27.14.5.41879 OTU 3 seqs
prokMSA_id:10386 X89573 Yersinia sp
prokMSA_id:10391 X89574 Yersinia sp
prokMSA_id:50988 AF366385 Yersinia ruckeri 
2.28.3.27.14.99 VARIOUS 16 seqs
2.28.3.27.14.99.41489 OTU 16 seqs
prokMSA_id:10341 X68674 Yersinia enterocolitica
prokMSA_id:10342 Z49828 Yersinia enterocolitica str. ER-3206-92
prokMSA_id:10345 Z49829 Yersinia enterocolitica str. ER-26036-92
prokMSA_id:10346 c. Z75316 Yersinia enterocolitica str. O:3 108
prokMSA_id:10347 U63135 Yersinia enterocolitica str. German
prokMSA_id:10348 X68673 Yersinia enterocolitica
prokMSA_id:10349 Z49830 Yersinia enterocolitica str. ER-31406-92
prokMSA_id:10393 X75276 Yersinia rohdei str. ER-2935 ATCC 43380
prokMSA_id:17691 AF366380 Yersinia intermedia 
prokMSA_id:17733 AF366381 Yersinia kristensenii 
prokMSA_id:34461 AF366384 Yersinia rohdei 
prokMSA_id:37259 AF366382 Yersinia mollaretii 
prokMSA_id:39860 AF366376 Yersinia aldovae 
prokMSA_id:41539 AF282308 Yersinia enterocolitica 
prokMSA_id:41642 AF366377 Yersinia bercovieri 
prokMSA_id:52901 AF366378 Yersinia enterocolitica 
2.28.3.27.15 PLE.SHIGELLOIDES_SUBGROUP 1 seq
2.28.3.27.15.19552 OTU 1 seq
prokMSA_id:10395 X60418 Plesiomonas shigelloides str. M51 NCIMB 9242
2.28.3.27.99 VARIOUS 181 seqs
2.28.3.27.99.30049 OTU 2 seqs
prokMSA_id:33643 AF322016 Planococcus citri gamma- endosymbiont 
prokMSA_id:63935 AF476107 Secondary endosymbiont of Planococcus citri and 23S genes 
2.28.3.27.99.35247 OTU 3 seqs
prokMSA_id:26769 AJ301681 Morganella morganii strain CIPA231T
prokMSA_id:52747 AF189697 Activated sludge BC55 
prokMSA_id:66563 M AJ487027 amplicon
2.28.3.27.99.38008 OTU 9 seqs
prokMSA_id:10108 AB004754 Klebsiella oxytoca JCM 1665
prokMSA_id:10109 Y17660 Klebsiella oxytoca str. 5725y
prokMSA_id:10110 Y17661 Klebsiella oxytoca str. 5884
prokMSA_id:10114 U81672 clone vadinBB56
prokMSA_id:20393 AF390083 Klebsiella oxytoca strain W-6 
prokMSA_id:26469 AB053117 Klebsiella oxytoca 
prokMSA_id:58286 AF543296 Klebsiella oxytoca strain ChDC OS46 
prokMSA_id:58294 AF543283 Klebsiella oxytoca strain ChDC OS31 
prokMSA_id:71572 AF319525 Klebsiella oxytoca 
2.28.3.27.99.39854 OTU 5 seqs
prokMSA_id:10323 X88848 Ewingella americana
prokMSA_id:10324 U29438 Ewingella americana
prokMSA_id:18948 AJ310685 clone 267
prokMSA_id:22395 AJ310683 clone 125
prokMSA_id:45158 AJ310684 clone 227
2.28.3.27.99.40316 OTU 7 seqs
prokMSA_id:9842 AF025367 Citrobacter 'genomospecies 10' CDC 4693-86
prokMSA_id:10134 AF047186 Kluyvera georgiana str. CDC enteric ATCC 51603
prokMSA_id:16953 AF176566 Kluyvera ascorbata strain CDC 0556/74 
prokMSA_id:24844 AF176562 Kluyvera sp. IAL9555/98 
prokMSA_id:35654 AF176563 Kluyvera sp. IAL9557/98 
prokMSA_id:51193 AF176564 Kluyvera sp. IAL9558/98 
prokMSA_id:72250 AF176565 Kluyvera ascorbata strain CDC 2066/78 
2.28.3.27.99.41283 OTU 3 seqs
prokMSA_id:79290 AF465793 Baumannia cicadellinicola 
prokMSA_id:79577 AF465794 Baumannia cicadellinicola 
prokMSA_id:80483 AF489427 Baumannia cicadellinicola ; tRNA-Glu complete ; and 23S 
2.28.3.27.99.41592 OTU 52 seqs
prokMSA_id:9875 U80183 Pantoea agglomerans ATCC 33261
prokMSA_id:9876 AF130891 Pantoea agglomerans str. A12
prokMSA_id:9877 AF130895 Pantoea agglomerans str. A16
prokMSA_id:9878 AF130900 Pantoea agglomerans str. A22
prokMSA_id:9879 AF130901 Pantoea agglomerans str. A23
prokMSA_id:9880 AF130904 Pantoea agglomerans str. A26
prokMSA_id:9881 AF130906 Pantoea agglomerans str. A28
prokMSA_id:9883 AF130923 Pantoea agglomerans str. A53
prokMSA_id:9884 AF130924 Pantoea agglomerans str. A54
prokMSA_id:9885 AF130927 Pantoea agglomerans str. A57
prokMSA_id:9886 AF130930 Pantoea agglomerans str. A60
prokMSA_id:9887 AF130932 Pantoea agglomerans str. A62
prokMSA_id:9889 AF130934 Pantoea agglomerans str. A65
prokMSA_id:9890 AF130935 Pantoea agglomerans str. A67
prokMSA_id:9891 AF130939 Pantoea agglomerans str. A71
prokMSA_id:9892 AF130943 Pantoea agglomerans str. A77
prokMSA_id:9893 AF130944 Pantoea agglomerans str. A79
prokMSA_id:9894 AF130946 Pantoea agglomerans str. A81
prokMSA_id:9895 AF130951 Pantoea agglomerans str. A91
prokMSA_id:9896 AF130952 Pantoea agglomerans str. A92
prokMSA_id:9900 Z96082 Enterobacter agglomerans LMG 2565
prokMSA_id:9906 U80202 Pantoea agglomerans ATCC 33243
prokMSA_id:9909 AF130886 Pantoea agglomerans str. A126
prokMSA_id:9910 AF130887 Pantoea agglomerans str. A20
prokMSA_id:9913 AF130899 Pantoea agglomerans str. A21
prokMSA_id:9915 AF130907 Pantoea agglomerans str. A29
prokMSA_id:9917 AF130912 Pantoea agglomerans str. A40
prokMSA_id:9919 AF130916 Pantoea agglomerans str. A45
prokMSA_id:9922 AF130919 Pantoea agglomerans str. A48
prokMSA_id:9923 AF130925 Pantoea agglomerans str. A55
prokMSA_id:9924 AF130926 Pantoea agglomerans str. A56
prokMSA_id:9925 AF130928 Pantoea agglomerans str. A58
prokMSA_id:9927 AF130931 Pantoea agglomerans str. A61
prokMSA_id:9930 AF130938 Pantoea agglomerans str. A70
prokMSA_id:9931 AF130940 Pantoea agglomerans str. A72
prokMSA_id:9932 AF130941 Pantoea agglomerans str. A73
prokMSA_id:9933 AF130942 Pantoea agglomerans str. A74
prokMSA_id:9934 AF130945 Pantoea agglomerans str. A80
prokMSA_id:9935 AF130947 Pantoea agglomerans str. A83
prokMSA_id:9936 AF130948 Pantoea agglomerans str. A84
prokMSA_id:9937 AF130949 Pantoea agglomerans str. A87
prokMSA_id:9940 AB004759 unnamed organism
prokMSA_id:9941 AF157694 Pantoea agglomerans str. drh1
prokMSA_id:10097 AF130894 Pantoea agglomerans str. A15
prokMSA_id:18938 AY048885 L3-17C7 
prokMSA_id:33792 AF348161 Enterobacter sp. IMD1260 
prokMSA_id:47393 AJ233423 Pantoea agglomerans strain DSM 3493
prokMSA_id:66729 AF373196 Pantoea agglomerans strain LMG 2565 
prokMSA_id:67501 AY092079 Pantoea agglomerans strain 732 
prokMSA_id:70540 AF130954 Erwinia herbicola 
prokMSA_id:71227 AF130920 Enterobacter agglomerans strain A49 
prokMSA_id:73786 AJ251466 Pantoea agglomerans strain NCTC9381T
2.28.3.27.99.42318 OTU 3 seqs
prokMSA_id:29699 AF293623 Secondary symbiont -U of Uroleucon astronomus rrs 
prokMSA_id:42020 AF293618 Secondary symbiont -U of Acyrthosiphon pisum rrs 
prokMSA_id:50997 AF293627 Secondary symbiont -U of Uroleucon solidaginis rrs 
2.28.3.27.99.42424 OTU 2 seqs
prokMSA_id:10039 AB004750 Enterobacter aerogenes JCM 1235
prokMSA_id:70669 K AJ487023 amplicon
2.28.3.27.99.42875 OTU 3 seqs
prokMSA_id:9808 AF130897 Pantoea agglomerans str. A18
prokMSA_id:9920 AF130917 Pantoea agglomerans str. A46
prokMSA_id:9921 AF130918 Pantoea agglomerans str. A47
2.28.3.27.99.42897 OTU 6 seqs
prokMSA_id:9818 U80205 Erwinia persicina ATCC 35998
prokMSA_id:9822 AJ001190 Erwinia persicinus LMG 2691
prokMSA_id:9824 AF024610 clone thrips6.4
prokMSA_id:9825 AF024611 clone thrips6.9
prokMSA_id:9830 Z96086 Erwinia persicinus LMG 11254
prokMSA_id:72866 AJ489826 Enterobacteriaceae CF01Ent-1 isolate CF01Ent-1
2.28.3.27.99.42903 OTU 86 seqs
prokMSA_id:9665 AF084835 str. KN4
prokMSA_id:9667 U90318 Salmonella enteritidis str. SE22
prokMSA_id:9668 U88548 Salmonella paratyphi
prokMSA_id:9669 U88545 Salmonella typhi str. St111
prokMSA_id:9670 U92193 Salmonella bovis subsp. morbificans str. Sbm1
prokMSA_id:9707 U90315 Salmonella matopeni str. Sm1
prokMSA_id:9751 AF025372 Citrobacter koseri CDC 3613-63
prokMSA_id:9756 Z47544 Salmonella typhi str. Ty2 ATCC 19430
prokMSA_id:9760 Z49264 Salmonella typhimurium str. E10 NCTC 8391
prokMSA_id:9769 X80681 Salmonella typhimurium ATCC 13311
prokMSA_id:9771 AF130915 Pantoea agglomerans str. A44
prokMSA_id:9772 AF130955 Salmonella sp
prokMSA_id:9773 AF170176 Salmonella typhimurium str. SGSC1412
prokMSA_id:9778 AF029227 Salmonella bongori str. 66:z41:- CIP 8233
prokMSA_id:9781 X80677 Salmonella sofia
prokMSA_id:9784 AB004755 Klebsiella planticola JCM 7251
prokMSA_id:9785 AF025366 Citrobacter koseri CDC 8132-86
prokMSA_id:9823 AF024607 Pantoea agglomerans str. TAC.I.94.1
prokMSA_id:9826 AF024612 Pantoea agglomerans str. TAC.XII.93.8
prokMSA_id:9864 AF076154 Erwinia cypripedii str. HeP01
prokMSA_id:10064 AB004744 Enterobacter asburiae str. 1497-78 JCM 6051
prokMSA_id:10075 AB004691 Pantoea agglomerans str. ATTC27155 JCM 1236
prokMSA_id:10077 Y17665 Enterobacter cloacae str. Nr. 3
prokMSA_id:10081 AF130914 Pantoea endophytica str. A42
prokMSA_id:10087 AF157695 Enterobacter cloacae str. drh3
prokMSA_id:10088 AF157688 Pantoea agglomerans str. 86350
prokMSA_id:10095 Z96078 Enterobacter cancerogenus LMG 2693
prokMSA_id:10103 AJ002811 Pantoea sp. str. R8
prokMSA_id:10142 Y17654 Klebsiella pneumoniae subsp. ozaenae ATCC 11296
prokMSA_id:10148 Y17657 Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884
prokMSA_id:10149 Y17668 Klebsiella pneumoniae str. Klebs313
prokMSA_id:10151 Y17656 Klebsiella pneumoniae subsp. pneumoniae ATCC 13883
prokMSA_id:10153 AB004753 Klebsiella pneumoniae subsp. pneumoniae JCM 1662
prokMSA_id:17230 AE008706 Salmonella typhimurium LT2 section 14 of 220 of the complete
prokMSA_id:20148 AF130982 Klebsiella pneumoniae subsp. ozaenae 
prokMSA_id:20481 AL627266 Salmonella enterica serovar Typhi Salmonella typhi strain CT
prokMSA_id:21665 AF290494 sheep mite Welshpool 31 
prokMSA_id:26536 AE008881 Salmonella typhimurium LT2 section 185 of 220 of the complet
prokMSA_id:27007 AL627280 Salmonella enterica serovar Typhi Salmonella typhi strain CT
prokMSA_id:27763 AF199029 Pantoea agglomerans 
prokMSA_id:27939 AJ233420 Klebsiella pneumoniae strain DSM 30104
prokMSA_id:29091 AF221603 Klebsiella sp. KG1 
prokMSA_id:32480 AF130983 Klebsiella pneumoniae subsp. rhinoscleromatis 
prokMSA_id:32605 AJ302154 Enterobacteriaceae sp. JM965 isolate JM965
prokMSA_id:32663 AF130981 Klebsiella pneumoniae 
prokMSA_id:34251 AF423262 soil clone 431-1 
prokMSA_id:34689 AE008820 Salmonella typhimurium LT2 section 124 of 220 of the complet
prokMSA_id:37413 AF332600 Salmonella enterica subsp. enterica 
prokMSA_id:38155 AF423229 soil clone 144-1 
prokMSA_id:38659 AF395913 Enterobacter aerogenes complete 
prokMSA_id:38852 AF423223 soil clone 1389-1 
prokMSA_id:40056 AF371852 clone p-2172-s959-3 
prokMSA_id:40959 AF227869 Salmonella enterica serovar Typhimurium 
prokMSA_id:41705 NC_003197 Salmonella typhimurium LT2 complete genome
prokMSA_id:44635 AF453251 Klebsiella pneumoniae 
prokMSA_id:50084 AF371851 clone p-2009-s959-5 
prokMSA_id:50412 AF126103 Enterobacter sp. 16-31 
prokMSA_id:51836 AE008893 Salmonella typhimurium LT2 section 197 of 220 of the complet
prokMSA_id:52343 AE008857 Salmonella typhimurium LT2 section 161 of 220 of the complet
prokMSA_id:52635 AF008580 Salmonella enterica IIIa 
prokMSA_id:53373 AF423250 soil clone 336-1 
prokMSA_id:53771 AF126102 Enterobacter sp. 3-45 
prokMSA_id:54877 AE008895 Salmonella typhimurium LT2 section 199 of 220 of the complet
prokMSA_id:54921 AE008886 Salmonella typhimurium LT2 section 190 of 220 of the complet
prokMSA_id:56056 AY133084 gamma clone ccslm2118 
prokMSA_id:60328 AF534213 clone Phe50 
prokMSA_id:60334 AF534207 clone Phe11 
prokMSA_id:60351 AF534193 clone Caf17 
prokMSA_id:64270 AF394539 Pantoea sp. P102 strain P102 
prokMSA_id:65334 AL627282 Salmonella enterica serovar Typhi Salmonella typhi strain CT
prokMSA_id:65335 AL627278 Salmonella enterica serovar Typhi Salmonella typhi strain CT
prokMSA_id:65338 AL627279 Salmonella enterica serovar Typhi Salmonella typhi strain CT
prokMSA_id:65339 AL627276 Salmonella enterica serovar Typhi Salmonella typhi strain CT
prokMSA_id:70171 AF423283 soil clone 624-1 
prokMSA_id:71139 AF228919 Klebsiella pneumoniae subsp. ozaenae 
prokMSA_id:71762 AF394538 Pantoea sp. P101 strain P101 
prokMSA_id:72445 AF290495 sheep mite Welshpool 24 
prokMSA_id:72626 AF228920 Klebsiella pneumoniae 
prokMSA_id:72996 AF227867 Salmonella enterica serovar Montevideo 
prokMSA_id:73274 AF511429 Klebsiella pneumoniae 
prokMSA_id:73497 AF423294 soil clone 816-1 
prokMSA_id:74266 AF417870 Pantoea sp. YSS/2001-2 
prokMSA_id:74428 AF227868 Salmonella enterica serovar Dublin 
prokMSA_id:74497 AF233324 Salmonella typhimurium fragment STMD1
prokMSA_id:80575 AJ508302 Enterobacter hormaechei strain CIP 103441
prokMSA_id:80956 AJ508303 Enterobacter cowanii strain CIP 107300
2.28.3.99 VARIOUS 26 seqs
2.28.3.99.30497 OTU 3 seqs
prokMSA_id:37302 AB042544 Thiothrix sp. EJ1M-B 
prokMSA_id:38006 AB042545 Thiothrix sp. EJ2M-B 
prokMSA_id:43018 AB042543 Thiothrix sp. SNR-3 
2.28.3.99.31710 OTU 6 seqs
prokMSA_id:30803 AB054162 HOC28 
prokMSA_id:46213 AB054180 HOC46 
prokMSA_id:47851 AB054184 HOC50 
prokMSA_id:50717 AB054165 HOC31 
prokMSA_id:51009 AB054146 HOC12 
prokMSA_id:54932 AB054167 HOC33 
2.28.3.99.32184 OTU 8 seqs
prokMSA_id:8177 AF001650 clone OCS44
prokMSA_id:8790 U70693 clone OM10
prokMSA_id:18789 AF245642 gamma NAC11-19 
prokMSA_id:21417 AY033304 gamma MB11E02 
prokMSA_id:54612 AY033314 gamma MB12D03 ; and 23S complete 
prokMSA_id:54824 AY033326 gamma MB11B08 and 23S genes 
prokMSA_id:54972 AY033311 gamma MB11G09 and 23S genes 
prokMSA_id:55020 AY033317 gamma MB12G11 and 23S genes 
2.28.3.99.33159 OTU 7 seqs
prokMSA_id:8832 D87345 unnamed organism
prokMSA_id:9054 AB015521 str. BD1-9
prokMSA_id:9055 AB015561 str. BD4-11
prokMSA_id:9056 AB015572 str. BD6-1
prokMSA_id:24319 AF288370 Idiomarina loihiensis 
prokMSA_id:67499 AY092077 Idiomarina loihiensis strain 53 
prokMSA_id:70055 AF235112 Gamma KT11ds7 
2.28.3.99.35438 OTU 2 seqs
prokMSA_id:60638 AF406536 gamma clone AEGEAN_243 
prokMSA_id:60643 AF406529 gamma clone AEGEAN_165 
2.28.4 DELTA_SUBDIVISION 618 seqs
2.28.4.1 DESULFOVIBRIO_GROUP 119 seqs
2.28.4.1.1 DHB.RETBAENSE_SUBGROUP 7 seqs
2.28.4.1.1.10723 OTU 1 seq
prokMSA_id:74638 AF524933 Desulfonauticus submarinus 
2.28.4.1.1.20133 OTU 1 seq
prokMSA_id:10404 X99234 Desulfonatronovibrio hydrogenovorans str. Z-7935 DSM 9292
2.28.4.1.1.20128 OTU 1 seq
prokMSA_id:10400 U48244 Desulfohalobium retbaense str. HR100 DSM 5692
2.28.4.1.1.20132 OTU 1 seq
prokMSA_id:10403 AF097803 clone 1959
2.28.4.1.1.20129 OTU 1 seq
prokMSA_id:10401 X99235 Desulfohalobium retbaense str. HR100 DSM 5692
2.28.4.1.1.20130 OTU 1 seq
prokMSA_id:10402 X80922 str. TD3
2.28.4.1.1.9596 OTU 1 seq
prokMSA_id:22125 AF269002 SBR1093 
2.28.4.1.2 DFN.LACUSTRE 1 seq
2.28.4.1.2.6877 OTU 1 seq
prokMSA_id:73563 AF418171 Desulfonatronum lacustre DSM 10312 
2.28.4.1.3 DMB.BACULATUM_SUBGROUP 24 seqs
2.28.4.1.3.20159 OTU 1 seq
prokMSA_id:10415 AF132738 Desulfomicrobium hypogeium str. CN-A
2.28.4.1.3.20172 OTU 1 seq
prokMSA_id:10421 U02469 Desulfomicrobium escambiense str. ESC1 ATCC 51164
2.28.4.1.3.21835 OTU 1 seq
prokMSA_id:33526 AJ277886 Desulfomicrobium escambiense strain DSM 10707T
2.28.4.1.3.25504 OTU 4 seqs
prokMSA_id:23777 AJ251623 Desulfomicrobium orale strain DSM12838
prokMSA_id:30927 AJ251628 Desulfomicrobium orale strain NY676
prokMSA_id:31560 AJ251624 Desulfomicrobium orale strain NY679
prokMSA_id:69839 AJ251627 Desulfomicrobium orale strain NY683
2.28.4.1.3.38743 OTU 6 seqs
prokMSA_id:69810 AY083023 delta clone P4-16 
prokMSA_id:70990 AY083022 delta clone P1-1 
prokMSA_id:71073 AY083019 delta clone P4-14 
prokMSA_id:71263 AY083021 delta clone P4-17 
prokMSA_id:71904 AY083020 delta clone P4-15 
prokMSA_id:73693 AY083018 delta clone P4-13 
2.28.4.1.3.42030 OTU 8 seqs
prokMSA_id:10412 X95570 clone Aspo1
prokMSA_id:10413 X99505 Desulfomicrobium sp. str. STL8
prokMSA_id:10414 AJ237604 Desulfobacterium macestii str. sulfide spring DSM 4194
prokMSA_id:17898 AJ277894 Desulfomicrobium baculatum strain DSM 4028T
prokMSA_id:21280 AJ277896 Desulfomicrobium baculatum strain DSM 1742
prokMSA_id:50324 AJ277895 Desulfomicrobium baculatum strain DSM 2555
prokMSA_id:54500 AJ277897 Desulfomicrobium norvegicum strain DSM 1741T
prokMSA_id:72167 AF280859 mle1-31 
2.28.4.1.3.42036 OTU 2 seqs
prokMSA_id:10418 AF030438 Desulfomicrobium baculatum str. strain X VKM B-1378
prokMSA_id:50942 AF131233 Desulfomicrobium sp. 'Bendigo B' 
2.28.4.1.3.525 OTU 1 seq
prokMSA_id:64335 AF443593 Desulfomicrobium sp. 'Delta +' 
2.28.4.1.4 DESULFOVIBRIO_SUBGROUP 87 seqs
2.28.4.1.4.1 DSV.HALOPHILUS_SUBGROUP 8 seqs
2.28.4.1.4.1.15674 OTU 1 seq
prokMSA_id:30839 AF230530 Desulfovibrio dechloracetivorans 
2.28.4.1.4.1.20181 OTU 1 seq
prokMSA_id:10429 X95230 Desulfovibrio aespoeensis
2.28.4.1.4.1.28058 OTU 2 seqs
prokMSA_id:10427 U90726 Desulfovibrio profundus str. 500-1 DSM 11384
prokMSA_id:72826 AF418172 Desulfovibrio profundus DSM 11384 
2.28.4.1.4.1.28107 OTU 3 seqs
prokMSA_id:10436 X99237 Desulfovibrio halophilus DSM 5663
prokMSA_id:10437 U48243 Desulfovibrio halophilus DSM 5663
prokMSA_id:10439 U53463 Desulfovibrio sp. SEBR 6143
2.28.4.1.4.1.907 OTU 1 seq
prokMSA_id:80009 AJ544687 Desulfovibrio brasiliensis strain LVform1
2.28.4.1.4.2 DSV.ZOSTERAE_SUBGROUP 4 seqs
2.28.4.1.4.2.20220 OTU 1 seq
prokMSA_id:10445 U53462 Desulfovibrio bastinii SEBR 4225
2.28.4.1.4.2.20217 OTU 1 seq
prokMSA_id:10442 Y18049 Desulfovibrio zosterae str. lac
2.28.4.1.4.2.20219 OTU 1 seq
prokMSA_id:10444 X95231 clone Aspo3
2.28.4.1.4.2.20311 OTU 1 seq
prokMSA_id:56227 AF458778 Desulfovibrio hydrothermalis 
2.28.4.1.4.3 DSV.SENEZII_SUBGROUP 2 seqs
2.28.4.1.4.3.28547 OTU 2 seqs
prokMSA_id:10448 AF050100 Desulfovibrio senezii str. CVL DSM 8436
prokMSA_id:10449 U52959 Desulfovibrio sp. str. CVH2
2.28.4.1.4.5 DSV.AMINOPHILUS_SUBGROUP 9 seqs
2.28.4.1.4.5.17766 OTU 1 seq
prokMSA_id:77555 AF482438 clone R2b32 
2.28.4.1.4.5.20237 OTU 1 seq
prokMSA_id:10454 AF067964 Desulfovibrio aminophilus str. ALA-3
2.28.4.1.4.5.2829 OTU 1 seq
prokMSA_id:34507 AF423185 Toluene-degrading methanogenic consortium Eub 5 
2.28.4.1.4.5.3066 OTU 1 seq
prokMSA_id:19551 AF227984 Desulfovibrio mexicoense 
2.28.4.1.4.5.32873 OTU 3 seqs
prokMSA_id:10456 AF193026 Desulfovibrio Mlhm str. Mlhm
prokMSA_id:51153 AF407202 clone GIF11 
prokMSA_id:82207 AY214190 clone ZZ14C2 
2.28.4.1.4.5.42223 OTU 2 seqs
prokMSA_id:10455 AF109470 Desulfovibrio zt31 str. zt3l
prokMSA_id:10458 AJ012593 unnamed organism
2.28.4.1.4.6 DSV.AFRICANUS_SUBGROUP 12 seqs
2.28.4.1.4.6.20276 OTU 1 seq
prokMSA_id:10473 Y17764 Desulfovibrio sulfodismutans str. ThAcO1
2.28.4.1.4.6.20280 OTU 1 seq
prokMSA_id:10474 U81725 clone vadinHA40
2.28.4.1.4.6.20283 OTU 1 seq
prokMSA_id:10478 X99236 Desulfovibrio africanus DSM 2603
2.28.4.1.4.6.20263 OTU 1 seq
prokMSA_id:10469 AF177276 Desulfovibrio inopinatus str. HHQ 20
2.28.4.1.4.6.20254 OTU 1 seq
prokMSA_id:10462 AF053752 Desulfovibrio burkinensis str. HDv DSM 6830
2.28.4.1.4.6.20256 OTU 1 seq
prokMSA_id:10463 U85468 Desulfovibrio BG6 str. BG6
2.28.4.1.4.6.20261 OTU 1 seq
prokMSA_id:10468 AJ012594 unnamed organism
2.28.4.1.4.6.20273 OTU 1 seq
prokMSA_id:10471 AF109469 Desulfovibrio zt10e str. zt10e
2.28.4.1.4.6.20598 OTU 1 seq
prokMSA_id:32796 AF332718 clone UASB_brew_B82 
2.28.4.1.4.6.28651 OTU 2 seqs
prokMSA_id:10470 AF053751 Desulfovibrio alcoholovorans str. SPSN DSM 5433
prokMSA_id:10475 AJ012592 unnamed organism
2.28.4.1.4.6.5888 OTU 1 seq
prokMSA_id:73426 D43944 Desulfovibrio magneticus 
2.28.4.1.4.7 DSV.GABONENSIS_SUBGROUP 4 seqs
2.28.4.1.4.7.16103 OTU 1 seq
prokMSA_id:68874 AF418170 Desulfovibrio giganteus DSM 4370 
2.28.4.1.4.7.34322 OTU 3 seqs
prokMSA_id:10480 U31080 Desulfovibrio gabonensis SEBR 2840
prokMSA_id:26629 Y09504 D.indonensis 
prokMSA_id:37664 AY062930 Desulfovibrio sp. Met 82 
2.28.4.1.4.8 DSV.CUNEATUS_SUBGROUP 3 seqs
2.28.4.1.4.8.17509 OTU 1 seq
prokMSA_id:78137 AB089110 delta clone:Rs-N35
2.28.4.1.4.8.20297 OTU 1 seq
prokMSA_id:10485 X99504 Desulfovibrio litoralis str. STL6 DSM 11393
2.28.4.1.4.8.20299 OTU 1 seq
prokMSA_id:10486 X99501 Desulfovibrio cuneatus str. STL1 DSM 11391
2.28.4.1.4.9 LW.INTRACELLULARIS_SUBGROUP 7 seqs
2.28.4.1.4.9.20319 OTU 1 seq
prokMSA_id:10497 L35148 Bilophila wadsworthia
2.28.4.1.4.9.29000 OTU 6 seqs
prokMSA_id:10489 U06423 symbiont of intracellular ileal symbiont of Mesocricetus aur
prokMSA_id:10490 U30147 Lawsonia intracellularis str. 1482/89 NCTC 12656
prokMSA_id:10491 L15739 symbiont of Sus scrofa
prokMSA_id:10496 U07570 Desulfovibrio sp. str. MIT 87-599
prokMSA_id:72733 U30147 Lawsonia intracellularis 
prokMSA_id:74139 U07570 Desulfovibrio sp
2.28.4.1.4.10 DSV.LONGREACHENSIS_SUBGROUP 13 seqs
2.28.4.1.4.10.21002 OTU 1 seq
prokMSA_id:10507 X93994 Desulfovibrio sp
2.28.4.1.4.10.29711 OTU 3 seqs
prokMSA_id:10505 X86689 Desulfovibrio sp. str. DMB
prokMSA_id:34844 AF131234 Desulfovibrio sp. 'Bendigo A' 
prokMSA_id:36540 AF418179 Desulfovibrio vulgaris DSM 644 
2.28.4.1.4.10.32308 OTU 7 seqs
prokMSA_id:10500 X93147 Desulfovibrio sp. str. KH2
prokMSA_id:10502 Z24450 Desulfovibrio longreachensis str. 16910a
prokMSA_id:26806 AJ295669 Desulfovibrio sp. IrT-JG1-71 
prokMSA_id:27402 AY059411 Desulfovibrio sp. R2 
prokMSA_id:39982 AF273083 Desulfovibrio oryzae 
prokMSA_id:46889 AJ295670 Desulfovibrio sp. IrT-JG1-58 
prokMSA_id:71137 AJ295679 Desulfovibrio sp. JG5 
2.28.4.1.4.10.32381 OTU 2 seqs
prokMSA_id:10506 U32578 Desulfovibrio acrylicus str. W218 DSM 10141
prokMSA_id:10508 AF090830 Desulfovibrio TBP-1 str. TBP-1
2.28.4.1.4.11 DSV.DESULFURICANS_SUBGROUP 25 seqs
2.28.4.1.4.11.13919 OTU 1 seq
prokMSA_id:30569 AF371871 clone p-2918-6C5 
2.28.4.1.4.11.15042 OTU 1 seq
prokMSA_id:23507 AB062810 clone:BCf11-19
2.28.4.1.4.11.16756 OTU 1 seq
prokMSA_id:78006 AB089109 delta clone:Rs-M89
2.28.4.1.4.11.17576 OTU 1 seq
prokMSA_id:78153 AB089104 delta clone:Rs-N31
2.28.4.1.4.11.21031 OTU 1 seq
prokMSA_id:10518 AF056091 Desulfovibrio UNSW3caefatS str. UNSW3caefatS
2.28.4.1.4.11.21029 OTU 1 seq
prokMSA_id:10517 U82813 Bilophila wadsworthia str. RZATAU
2.28.4.1.4.11.29341 OTU 6 seqs
prokMSA_id:10511 U42221 Desulfovibrio fairfieldensis
prokMSA_id:10512 AF056088 Desulfovibrio ABHU1SB str. ABHU1SB
prokMSA_id:10513 AF056089 Desulfovibrio ABHU1SBfatS str. ABHU1SBfatS
prokMSA_id:10514 AF056090 Desulfovibrio ABHU2SB str. ABHU2SB
prokMSA_id:25583 AF192155 Desulfovibrio sp. D4 complete 
prokMSA_id:49692 AJ251630 Desulfovibrio sp. DSM12803 
2.28.4.1.4.11.30188 OTU 2 seqs
prokMSA_id:51535 AF192152 Desulfomonas pigra complete 
prokMSA_id:52234 AF371870 clone p-223-o5 
2.28.4.1.4.11.33255 OTU 2 seqs
prokMSA_id:10519 Y12254 Desulfovibrio intestinalis str. KMS2
prokMSA_id:33199 AF192154 Desulfovibrio desulfuricans subsp. desulfuricans strain MB c
2.28.4.1.4.11.34135 OTU 9 seqs
prokMSA_id:10515 M34113 Desulfovibrio desulfuricans subsp. desulfuricans ATCC 27774
prokMSA_id:10516 AF098671 Desulfovibrio desulfuricans
prokMSA_id:10526 X93146 Desulfovibrio sp. str. KRS1
prokMSA_id:22674 AF427913 clone 9E 
prokMSA_id:45268 AF192153 Desulfovibrio desulfuricans subsp. desulfuricans strain Esse
prokMSA_id:48934 AF354664 Desulfovibrio desulfuricans 
prokMSA_id:50393 AJ415573 Desulfovibrio desulfuricans strain 0104 959
prokMSA_id:68469 AB081579 Desulfovibrio sp. A45 
prokMSA_id:72418 AJ251631 Desulfovibrio sp. FD1 
2.28.4.2 BDE.STOLPII_GROUP 25 seqs
2.28.4.2.1 BDE.STOLPII_SUBGROUP 10 seqs
2.28.4.2.1.15427 OTU 1 seq
prokMSA_id:38634 AF084853 Bdellovibrio sp. Gunpowder 
2.28.4.2.1.15436 OTU 1 seq
prokMSA_id:75942 AJ518802 delta clone JG37-AG-139
2.28.4.2.1.17339 OTU 1 seq
prokMSA_id:40173 AJ290009 FukuN9 
2.28.4.2.1.18378 OTU 1 seq
prokMSA_id:31879 AF084857 Bdellovibrio sp. JS3 
2.28.4.2.1.20265 OTU 1 seq
prokMSA_id:33331 AB054175 delta HOC41 
2.28.4.2.1.28753 OTU 4 seqs
prokMSA_id:22841 AF084863 Bdellovibrio sp. JS10 
prokMSA_id:23141 AF084858 Bdellovibrio sp. JS4 
prokMSA_id:25914 AF084856 Bdellovibrio sp. JS2 
prokMSA_id:28791 AF084860 Bdellovibrio sp. JS6 
2.28.4.2.1.3144 OTU 1 seq
prokMSA_id:49685 AJ288899 Bdellovibrio stolpii strain DSM 12778
2.28.4.2.2 ENVIRONMENTAL_CLONE_VADIN_BA07_SUBGROUP 8 seqs
2.28.4.2.2.14392 OTU 1 seq
prokMSA_id:61307 AY043958 division TM6 clone NMW3.210WL 
2.28.4.2.2.15105 OTU 1 seq
prokMSA_id:61498 AY043739 division TM6 clone NOS7.2WL 
2.28.4.2.2.21090 OTU 1 seq
prokMSA_id:10543 X97099 clone TM6
2.28.4.2.2.29451 OTU 3 seqs
prokMSA_id:10536 U81641 clone vadinBA07
prokMSA_id:10538 AJ009448 clone SJA-4
prokMSA_id:50582 AJ387898 C1-3 clone C1-3
2.28.4.2.2.32596 OTU 2 seqs
prokMSA_id:29910 AF255643 clone Ebpr8 
prokMSA_id:33441 AF255637 clone Ebpr6 
2.28.4.2.5 ENVIRONMENTAL_CLONE_WCHB1-56_SUBGROUP 2 seqs
2.28.4.2.5.21104 OTU 1 seq
prokMSA_id:10555 AF050603 clone WCHB1-11
2.28.4.2.5.21107 OTU 1 seq
prokMSA_id:10558 AF050605 clone WCHB1-56
2.28.4.2.6 ENVIRONMENTAL_CLONE_WCHB1-07_SUBGROUP 5 seqs
2.28.4.2.6.1666 OTU 1 seq
prokMSA_id:18743 AF423182 Toluene-degrading methanogenic consortium Eub 2 
2.28.4.2.6.21124 OTU 1 seq
prokMSA_id:10566 AF050600 clone WCHB1-07
2.28.4.2.6.21127 OTU 1 seq
prokMSA_id:10567 AF050599 clone WCHB1-26
2.28.4.2.6.21120 OTU 1 seq
prokMSA_id:10560 AF050606 clone WCHB1-64
2.28.4.2.6.8024 OTU 1 seq
prokMSA_id:82149 AY218586 clone KD2-5 
2.28.4.3 DSR.ACETIVORANS_GROUP 5 seqs
2.28.4.3.10765 OTU 1 seq
prokMSA_id:51780 Y18292 Hippea maritima 
2.28.4.3.13625 OTU 1 seq
prokMSA_id:45576 AF325180 clone B45 
2.28.4.3.15035 OTU 1 seq
prokMSA_id:47020 AF232926 delta MS10 
2.28.4.3.21137 OTU 1 seq
prokMSA_id:10570 X72768 Desulfurella acetivorans DSM 5264
2.28.4.3.688 OTU 1 seq
prokMSA_id:33655 AF402982 Desulfurella sp. clone 
2.28.4.6 MYXOBACTERIA 101 seqs
2.28.4.6.1 MYX.XANTHUS_SUBGROUP 65 seqs
2.28.4.6.1.11776 OTU 1 seq
prokMSA_id:66954 AF482687 Myxobacterium KC 
2.28.4.6.1.18852 OTU 1 seq
prokMSA_id:63253 AF523970 clone FW35 
2.28.4.6.1.21188 OTU 1 seq
prokMSA_id:10596 AJ009449 clone SJA-5
2.28.4.6.1.21740 OTU 1 seq
prokMSA_id:10623 AJ233908 Melittangium boletus str. Me b8
2.28.4.6.1.21771 OTU 1 seq
prokMSA_id:10633 AJ233905 Cystobacter violaceus str. Cb vi29
2.28.4.6.1.31646 OTU 2 seqs
prokMSA_id:10586 AJ233949 str. NOCB-2
prokMSA_id:10587 AJ233950 str. NOCB-4
2.28.4.6.1.31919 OTU 5 seqs
prokMSA_id:24157 AF382397 Anaeromyxobacter dehalogenans strain 2CP-5 
prokMSA_id:27824 AF382398 Anaeromyxobacter dehalogenans strain 2CP-2 
prokMSA_id:31177 AF382400 Anaeromyxobacter dehalogenans strain 2CP-3 
prokMSA_id:45051 AF382399 Anaeromyxobacter dehalogenans strain 2CP-C 
prokMSA_id:47993 AF382396 Anaeromyxobacter dehalogenans strain 2CP-1 
2.28.4.6.1.32103 OTU 25 seqs
prokMSA_id:10589 AJ233931 Corallococcus exiguus str. Cc e12b
prokMSA_id:10590 AJ233932 Corallococcus exiguus str. Cc e100
prokMSA_id:10594 M34114 Myxococcus xanthus str. DK1622
prokMSA_id:10600 AJ233909 Cystobacter disciformis str. An d1
prokMSA_id:10601 AJ233916 Myxococcus flavescens str. Mx fl1
prokMSA_id:10602 AJ233917 Myxococcus fulvus str. Mx f2
prokMSA_id:10603 AJ233918 Myxococcus fulvus str. Mx f421
prokMSA_id:10604 AJ233919 Myxococcus fulvus str. Mx f428
prokMSA_id:10605 AJ233920 Myxococcus macrosporus str. Cc m7
prokMSA_id:10606 AJ233921 Myxococcus macrosporus str. Cc m8
prokMSA_id:10608 AJ233923 Myxococcus stipitatus str. Mx s42
prokMSA_id:10609 AJ233924 Myxococcus stipitatus str. Mx s52
prokMSA_id:10610 AJ233925 Myxococcus virescens str. Mx v2
prokMSA_id:10611 AJ233926 Myxococcus virescens str. Mx v76
prokMSA_id:10612 AJ233927 Myxococcus virescens str. Mx v1
prokMSA_id:10613 AJ233928 Myxococcus virescens str. Mx v144
prokMSA_id:10614 AJ233929 Myxococcus xanthus str. Mx x1 DSM 435
prokMSA_id:10615 AJ233930 Myxococcus xanthus str. Mx x132
prokMSA_id:17656 AY072737 Myxococcus macrosporus strain 125-10-3 complete 
prokMSA_id:20918 AY032879 Myxococcus fulvus 128-7 complete 
prokMSA_id:21317 AY072740 Myxococcus macrosporus strain 125-10-1 complete 
prokMSA_id:34703 AF466191 Myxococcus fulvus strain 125-1 complete 
prokMSA_id:35329 AY072738 Myxococcus macrosporus strain 125-10-2 complete 
prokMSA_id:47762 AF336801 Myxococcus fulvus 
prokMSA_id:66414 AF506736 Myxococcus xanthus 
2.28.4.6.1.33558 OTU 14 seqs
prokMSA_id:10617 AJ233897 Cystobacter fuscus str. Cb f6
prokMSA_id:10618 AJ233898 Cystobacter fuscus str. Cb f10
prokMSA_id:10619 AJ233899 Cystobacter fuscus str. Cb f39
prokMSA_id:10620 AJ233901 Cystobacter ferrugineus str. Cb fe18
prokMSA_id:10621 AJ233902 Cystobacter ferrugineus str. Cb fe27
prokMSA_id:10622 AJ233907 Melittangium alboraceum str. Me b7
prokMSA_id:10626 AJ233910 Cystobacter disciformis str. An d4
prokMSA_id:10627 AJ233911 Cystobacter disciformis str. An d6
prokMSA_id:10628 AJ233912 Archangium gephyra str. Ar g1
prokMSA_id:10629 AJ233913 Archangium gephyra str. Ar g2
prokMSA_id:10630 AJ233900 Cystobacter ferrugineus str. Cb fe13
prokMSA_id:10631 AJ233903 Cystobacter minus str. Cb m2
prokMSA_id:66413 AF506737 Cystobacter sp. SHX9 
prokMSA_id:66415 AF506735 Cystobacter sp. BD54 
2.28.4.6.1.33617 OTU 4 seqs
prokMSA_id:10582 AJ233935 Stigmatella aurantiaca str. Sg a1
prokMSA_id:10583 AJ233936 Stigmatella aurantiaca str. Sg a15
prokMSA_id:10584 AJ233937 Stigmatella aurantiaca str. Sg a28
prokMSA_id:10585 AJ233934 Stigmatella erecta str. Pd e19
2.28.4.6.1.39337 OTU 2 seqs
prokMSA_id:75334 AJ518797 delta clone JG37-AG-106
prokMSA_id:76443 AJ518794 delta clone JG37-AG-82
2.28.4.6.1.42650 OTU 2 seqs
prokMSA_id:10580 M94281 Stigmatella aurantiaca ATCC 25190
prokMSA_id:10581 AJ233933 Stigmatella erecta str. Pd e3
2.28.4.6.1.42658 OTU 4 seqs
prokMSA_id:10591 AJ233914 Myxococcus coralloides str. Cc c494
prokMSA_id:10592 AJ233915 Myxococcus coralloides str. Cc c806
prokMSA_id:10607 AJ233922 Myxococcus stipitatus str. Mx s33
prokMSA_id:66412 AF506738 Myxococcus stipitatus 
2.28.4.6.1.4473 OTU 1 seq
prokMSA_id:65455 AY102330 clone a13134 
2.28.4.6.1.9722 OTU 1 seq
prokMSA_id:21534 AF414588 clone P3OB-42 
2.28.4.6.3 POL.CELLULOSUM_SUBGROUP 36 seqs
2.28.4.6.3.1104 OTU 1 seq
prokMSA_id:72214 AF354167 delta isolate Eel-36e1D6 
2.28.4.6.3.11813 OTU 1 seq
prokMSA_id:66994 AB083432 Plesiocystis pacifica 
2.28.4.6.3.12696 OTU 1 seq
prokMSA_id:75552 AJ532713 delta clone JG34-KF-14
2.28.4.6.3.13300 OTU 1 seq
prokMSA_id:76214 AJ532714 delta clone JG34-KF-243
2.28.4.6.3.13568 OTU 1 seq
prokMSA_id:45556 AF280857 mle1-27 
2.28.4.6.3.14360 OTU 1 seq
prokMSA_id:37853 AF254393 UASB_TL25 complete 
2.28.4.6.3.14421 OTU 1 seq
prokMSA_id:77008 AJ518790 delta clone JG37-AG-15
2.28.4.6.3.15939 OTU 1 seq
prokMSA_id:38718 AB062751 Haliangium tepidum 
2.28.4.6.3.16380 OTU 1 seq
prokMSA_id:30991 AF234747 sludge A9 
2.28.4.6.3.18307 OTU 1 seq
prokMSA_id:78239 AJ535224 delta clone Hyd24-27
2.28.4.6.3.18851 OTU 1 seq
prokMSA_id:63252 AF523971 clone FW46 
2.28.4.6.3.20747 OTU 1 seq
prokMSA_id:48487 AJ318168 delta clone BIrii41
2.28.4.6.3.21794 OTU 1 seq
prokMSA_id:10641 AJ233940 Chondromyces pediculatus str. Cm p17
2.28.4.6.3.21819 OTU 1 seq
prokMSA_id:10652 AJ233944 Polyangium vitellinum str. Pl vt1
2.28.4.6.3.21805 OTU 1 seq
prokMSA_id:10649 AJ233945 Nannocystis aggregans str. Na a1
2.28.4.6.3.21817 OTU 1 seq
prokMSA_id:10650 AJ233946 Nannocystis exedens str. Na e1
2.28.4.6.3.21802 OTU 1 seq
prokMSA_id:10645 AJ233943 Polyangium thaxteri str. Pl t3
2.28.4.6.3.21824 OTU 1 seq
prokMSA_id:10654 AB016470 str. SMP-2
2.28.4.6.3.21821 OTU 1 seq
prokMSA_id:10653 AB016469 str. SHI-1
2.28.4.6.3.21829 OTU 1 seq
prokMSA_id:10657 AJ233948 str. NOSO-1
2.28.4.6.3.2465 OTU 1 seq
prokMSA_id:79653 AY193162 clone BTM36 
2.28.4.6.3.28193 OTU 9 seqs
prokMSA_id:17113 AY039304 Polyangium cellulosum complete 
prokMSA_id:22473 AF467674 Polyangium cellulosum strain So9857 complete 
prokMSA_id:29731 AY079453 Polyangium cellulosum strain So0089-1 complete 
prokMSA_id:39056 AF387628 Polyangium cellulosum strain 87-5 complete 
prokMSA_id:41480 AF467673 Polyangium cellulosum strain So9882-1 complete 
prokMSA_id:45207 AY032880 Polyangium cellulosum So9721-1 complete 
prokMSA_id:46866 AF467672 Polyangium cellulosum strain So9881 complete 
prokMSA_id:47189 AF467675 Polyangium cellulosum strain So9735-22 complete 
prokMSA_id:72161 AJ316015 Polyangium cellulosum strain So ce90
2.28.4.6.3.2848 OTU 1 seq
prokMSA_id:71817 AF280858 mle1-29 
2.28.4.6.3.32288 OTU 4 seqs
prokMSA_id:10639 AJ233938 Chondromyces apiculatus str. Cm a14
prokMSA_id:10640 AJ233939 Chondromyces lanuginosus str. Sy t2
prokMSA_id:10642 AJ233941 Chondromyces robustus str. Cm a22
prokMSA_id:10643 AJ233942 Chondromyces robustus str. Cm a13
2.28.4.6.3.9 OTU 1 seq
prokMSA_id:26373 AF387627 Polyangium cellulosum strain 9741 complete 
2.28.4.7 DESULFUROMONAS_GROUP 109 seqs
2.28.4.7.1 PEB.ACETYLENICUS_SUBGROUP 51 seqs
2.28.4.7.1.11703 OTU 1 seq
prokMSA_id:66925 AJ306774 clone SHA-72
2.28.4.7.1.11850 OTU 1 seq
prokMSA_id:76001 AJ518803 delta clone JG37-AG-140
2.28.4.7.1.12023 OTU 1 seq
prokMSA_id:76094 AJ519663 delta clone GuBH2-AD/TzT-67
2.28.4.7.1.12204 OTU 1 seq
prokMSA_id:74843 AJ441215 delta clone P. palm C/A 79
2.28.4.7.1.124 OTU 1 seq
prokMSA_id:78716 AY177793 Desulfuromonas sp. clone LH2_14 
2.28.4.7.1.14525 OTU 1 seq
prokMSA_id:77061 AJ518793 delta clone JG37-AG-55
2.28.4.7.1.1477 OTU 1 seq
prokMSA_id:79502 AJ431235 Cytophaga sp. Dex80-64 strain Dex80-64
2.28.4.7.1.15149 OTU 1 seq
prokMSA_id:77161 AF458286 delta ML1218M-7 
2.28.4.7.1.1661 OTU 1 seq
prokMSA_id:78912 AY177804 Desulfuromonadales 
2.28.4.7.1.16925 OTU 1 seq
prokMSA_id:78077 AJ535229 delta clone Hyd89-13
2.28.4.7.1.17874 OTU 1 seq
prokMSA_id:76936 AJ532715 delta clone JG34-KF-369
2.28.4.7.1.17870 OTU 1 seq
prokMSA_id:76933 AJ518792 delta clone JG37-AG-33
2.28.4.7.1.18007 OTU 1 seq
prokMSA_id:33009 AY028222 Verrucomicrobia Arctic95B-10 
2.28.4.7.1.18588 OTU 1 seq
prokMSA_id:71000 AF354154 delta isolate Eel-TE1A4 
2.28.4.7.1.18969 OTU 1 seq
prokMSA_id:62663 AF507900 Verrucomicrobia clone ML635J-58 
2.28.4.7.1.19505 OTU 1 seq
prokMSA_id:63329 AF523885 clone RCP2-62 
2.28.4.7.1.20530 OTU 1 seq
prokMSA_id:79161 AJ431234 Cytophaga sp. Dex80-43 strain Dex80-43
2.28.4.7.1.21847 OTU 1 seq
prokMSA_id:10662 U28172 Desulfuromonas palmitatis str. SDBY1 ATCC 51701
2.28.4.7.1.21844 OTU 1 seq
prokMSA_id:10661 AJ240985 clone Sva0853
2.28.4.7.1.21831 OTU 1 seq
prokMSA_id:10658 Y17712 Malonomonas rubra str. GraMal1 DSM 5091
2.28.4.7.1.21893 OTU 1 seq
prokMSA_id:10684 U23140 Desulfuromonas acetexigens DSM 1397
2.28.4.7.1.21889 OTU 1 seq
prokMSA_id:10682 AJ241020 clone Sva0679
2.28.4.7.1.21897 OTU 1 seq
prokMSA_id:10686 X77216 Pelobacter acidigallici str. MaGa12 DSM 2377
2.28.4.7.1.21884 OTU 1 seq
prokMSA_id:10680 AB015243 str. JTB38
2.28.4.7.1.21888 OTU 1 seq
prokMSA_id:10681 AJ241001 clone Sva0485
2.28.4.7.1.21854 OTU 1 seq
prokMSA_id:10667 U41562 Pelobacter venetianus DSM 2394
2.28.4.7.1.21873 OTU 1 seq
prokMSA_id:10678 AF154096 clone BPC076
2.28.4.7.1.21915 OTU 1 seq
prokMSA_id:10691 AB015242 str. JTB36
2.28.4.7.1.21914 OTU 1 seq
prokMSA_id:10690 AB015549 str. BD3-7
2.28.4.7.1.21903 OTU 1 seq
prokMSA_id:10689 AB015533 str. BD2-3
2.28.4.7.1.21965 OTU 1 seq
prokMSA_id:79310 AY185328 Desulfuromonas sp. clone AKS67 
2.28.4.7.1.2654 OTU 1 seq
prokMSA_id:80275 AY193143 clone Bol29 
2.28.4.7.1.27657 OTU 6 seqs
prokMSA_id:10663 AJ240980 clone Sva1034
prokMSA_id:10664 AJ240983 clone Sva1033
prokMSA_id:10665 AJ241000 clone Sva0566
prokMSA_id:10666 AJ241010 clone Sva0556
prokMSA_id:48291 AJ271656 Pelobacter sp. clone A3b3
prokMSA_id:78882 AY177801 Desulfuromonas sp. clone SB2_94 
2.28.4.7.1.30801 OTU 2 seqs
prokMSA_id:10683 X79413 Pelobacter carbinolicus str. GraBd1 DSM 2380
prokMSA_id:10685 U23141 Pelobacter carbinolicus str. GraBd1 DSM 2380
2.28.4.7.1.31933 OTU 2 seqs
prokMSA_id:41059 AF357915 Desulfuromonas michiganensis strain BB1 
prokMSA_id:51450 AF357914 Desulfuromonas michiganensis strain BRS1 
2.28.4.7.1.32742 OTU 4 seqs
prokMSA_id:10660 X79412 Desulfuromusa bakii str. Gyprop DSM 7345
prokMSA_id:10692 X79415 Desulfuromusa succinoxidans str. Gylac DSM 8270
prokMSA_id:10695 X79414 Desulfuromusa kysingii str. Kysw2 DSM 7343
prokMSA_id:18366 AY062868 delta clone d1 
2.28.4.7.1.33282 OTU 2 seqs
prokMSA_id:29670 AF354162 delta isolate SB-24e1D6 
prokMSA_id:72950 AF354159 delta isolate SB-24e1E8 
2.28.4.7.1.5400 OTU 1 seq
prokMSA_id:72784 AF420369 isolate C1_B041 
2.28.4.7.1.86 OTU 1 seq
prokMSA_id:79353 AF382109 clone ZA2615c 
2.28.4.7.1.9397 OTU 1 seq
prokMSA_id:66635 AY094495 delta clone 8-42 
2.28.4.7.2 DSM.ACETOXIDANS_SUBGROUP 9 seqs
2.28.4.7.2.14171 OTU 1 seq
prokMSA_id:76391 AJ519664 delta clone GuBH2-AG-114
2.28.4.7.2.17577 OTU 1 seq
prokMSA_id:24543 AF293008 Green Bay ferromanganous micronodule MND4 
2.28.4.7.2.21923 OTU 1 seq
prokMSA_id:10699 Y11560 Desulfuromonas thiophila str. NZ27 DSMZ 8987
2.28.4.7.2.31228 OTU 2 seqs
prokMSA_id:38853 AY062880 delta clone d14 
prokMSA_id:52449 AY062875 delta clone d9 
2.28.4.7.2.468 OTU 1 seq
prokMSA_id:10700 U81766 clone vadinHA49
2.28.4.7.2.469 OTU 1 seq
prokMSA_id:10701 AF149887 str. 09.96.18
2.28.4.7.2.471 OTU 1 seq
prokMSA_id:10703 AB013831 str. 32.a
2.28.4.7.2.8647 OTU 1 seq
prokMSA_id:35822 AY062878 delta clone d13 
2.28.4.7.4 GBC.METALLIREDUCENS_SUBGROUP 49 seqs
2.28.4.7.4.10467 OTU 1 seq
prokMSA_id:82426 AY214185 clone ZZ12C11 
2.28.4.7.4.11181 OTU 1 seq
prokMSA_id:22312 AF229788 TA15 
2.28.4.7.4.11933 OTU 1 seq
prokMSA_id:76056 AJ518795 delta clone JG37-AG-90
2.28.4.7.4.12891 OTU 1 seq
prokMSA_id:75593 AJ519630 delta clone Sh765B-TzT-29
2.28.4.7.4.13051 OTU 1 seq
prokMSA_id:67796 AF420341 isolate a2b027 
2.28.4.7.4.13395 OTU 1 seq
prokMSA_id:60598 AF407700 clone G13 
2.28.4.7.4.13716 OTU 1 seq
prokMSA_id:38392 AF050538 WCHB1-27 
2.28.4.7.4.14552 OTU 1 seq
prokMSA_id:23462 AY013644 Banisveld landfill BVB71 
2.28.4.7.4.14893 OTU 1 seq
prokMSA_id:75868 AF404348 Geobacter sp. strain NS1 
2.28.4.7.4.15582 OTU 1 seq
prokMSA_id:32027 AF223382 Trichlorobacter thiogenes 
2.28.4.7.4.15648 OTU 1 seq
prokMSA_id:47124 AF229786 TA13 
2.28.4.7.4.1594 OTU 1 seq
prokMSA_id:79548 AF382143 clone ZA3735c 
2.28.4.7.4.16807 OTU 1 seq
prokMSA_id:62386 AF529129 delta clone FTLpost101 
2.28.4.7.4.16827 OTU 1 seq
prokMSA_id:62391 AF529127 delta clone FTLM68 
2.28.4.7.4.17360 OTU 1 seq
prokMSA_id:62404 AF529114 delta clone FTLM111 
2.28.4.7.4.17529 OTU 1 seq
prokMSA_id:61837 AF529325 delta clone CLi130 
2.28.4.7.4.18289 OTU 1 seq
prokMSA_id:48147 AF234748 sludge H16 
2.28.4.7.4.18855 OTU 1 seq
prokMSA_id:63255 AF523968 clone FW140 
2.28.4.7.4.18859 OTU 1 seq
prokMSA_id:63259 AF523965 clone FW110 
2.28.4.7.4.18853 OTU 1 seq
prokMSA_id:63254 AF523969 clone FW121 
2.28.4.7.4.19032 OTU 1 seq
prokMSA_id:78341 AJ535250 delta clone Hyd89-66
2.28.4.7.4.19774 OTU 1 seq
prokMSA_id:48355 AY013609 Banisveld landfill BVA59 
2.28.4.7.4.20206 OTU 1 seq
prokMSA_id:71269 AF229789 TA16 
2.28.4.7.4.21729 OTU 1 seq
prokMSA_id:34143 AJ249114 SHA-207 
2.28.4.7.4.2424 OTU 1 seq
prokMSA_id:20001 AF229784 TA11 
2.28.4.7.4.3052 OTU 1 seq
prokMSA_id:79712 AY192275 candidate division OP10 clone S1a-1H 
2.28.4.7.4.31359 OTU 2 seqs
prokMSA_id:10735 U13928 Geobacter sulfurreducens str. PCA ATCC 51573
prokMSA_id:34292 AF422626 clone d006 
2.28.4.7.4.3181 OTU 1 seq
prokMSA_id:18952 AJ307942 mRNA clone sipK44
2.28.4.7.4.42744 OTU 2 seqs
prokMSA_id:24410 AJ249102 SHA-22 
prokMSA_id:49319 AF229783 TA10 
2.28.4.7.4.4563 OTU 1 seq
prokMSA_id:65485 AJ278162 delta SHD-127 
2.28.4.7.4.481 OTU 1 seq
prokMSA_id:10708 Y19191 Geobacter sp. str. CdA-3
2.28.4.7.4.482 OTU 1 seq
prokMSA_id:10709 L07834 Geobacter metallireducens str. GS-15 ATCC 53774
2.28.4.7.4.498 OTU 1 seq
prokMSA_id:10714 X70954 Pelobacter propionicus str. OttBd1 DSM 2379
2.28.4.7.4.505 OTU 1 seq
prokMSA_id:10718 AJ009465 clone SJA-51
2.28.4.7.4.507 OTU 1 seq
prokMSA_id:10719 AJ009485 clone SJA-111
2.28.4.7.4.519 OTU 1 seq
prokMSA_id:10720 AJ009496 clone SJA-152
2.28.4.7.4.520 OTU 1 seq
prokMSA_id:10721 AJ009498 clone SJA-162
2.28.4.7.4.522 OTU 1 seq
prokMSA_id:10724 AF154103 clone GCA047
2.28.4.7.4.528 OTU 1 seq
prokMSA_id:10726 AF019929 Geobacter sp. str. Ala-6
2.28.4.7.4.531 OTU 1 seq
prokMSA_id:10728 U96917 Geobacter arculus str. Dfr1
2.28.4.7.4.533 OTU 1 seq
prokMSA_id:10729 U96918 Geobacter akaganeitreducens str. Dfr2
2.28.4.7.4.542 OTU 1 seq
prokMSA_id:10733 Y19190 Geobacter sp. str. CdA-2
2.28.4.7.4.6630 OTU 1 seq
prokMSA_id:81373 AY218752 clone KD6-131 
2.28.4.7.4.7301 OTU 1 seq
prokMSA_id:81438 AY214184 clone ZZ12C10 
2.28.4.7.4.9216 OTU 1 seq
prokMSA_id:37152 AY013647 Banisveld landfill BVB45 
2.28.4.7.4.9495 OTU 1 seq
prokMSA_id:29387 AF229787 TA14 
2.28.4.7.4.9511 OTU 1 seq
prokMSA_id:60011 AB091329 clone:UI
2.28.4.8 BDE.BACTERIOVORUS_GROUP 11 seqs
2.28.4.8.12271 OTU 1 seq
prokMSA_id:74869 AF148941 Bdellovibrio strain TRA2 
2.28.4.8.14902 OTU 1 seq
prokMSA_id:38566 AJ292518 Bdellovibrio sp. W strain ATCC 27047
2.28.4.8.19225 OTU 1 seq
prokMSA_id:16939 AF263833 Bdellovibrio strain SRA9 
2.28.4.8.24172 OTU 6 seqs
prokMSA_id:24625 AJ292760 Bdellovibrio strain HD 127 DSM 50708
prokMSA_id:38436 AF263832 Bdellovibrio strain SRE7 
prokMSA_id:39664 AJ278145 Bdellovibrio strain DSM 50705
prokMSA_id:40800 AJ292759 Bdellovibrio strain HD 100 DSM 50701
prokMSA_id:40880 AF084850 Bdellovibrio strain 100 
prokMSA_id:44877 AF084851 Bdellovibrio strain E 
2.28.4.8.31156 OTU 2 seqs
prokMSA_id:30112 AF148939 Bdellovibrio strain BRP4 
prokMSA_id:49295 AF148938 Bdellovibrio strain BEP2 
2.28.4.10 DESULFOBULBUS_ASSEMBLAGE 39 seqs
2.28.4.10.11632 OTU 1 seq
prokMSA_id:36814 AF170420 Thermodesulforhabdus sp. nov. M40/2 CIV-3.2 
2.28.4.10.11639 OTU 1 seq
prokMSA_id:66902 AJ306805 clone SHD-1
2.28.4.10.11706 OTU 1 seq
prokMSA_id:66926 AJ306772 clone SHA-50
2.28.4.10.12434 OTU 1 seq
prokMSA_id:59898 AY133092 delta clone ccslm247 
2.28.4.10.12764 OTU 1 seq
prokMSA_id:75569 AJ534628 clone JG36-TzT-55
2.28.4.10.12982 OTU 1 seq
prokMSA_id:31004 AF282178 Btol 
2.28.4.10.13055 OTU 1 seq
prokMSA_id:67799 AF420338 isolate a2b025 
2.28.4.10.15806 OTU 1 seq
prokMSA_id:77292 AF482435 clone R1p32 
2.28.4.10.16216 OTU 1 seq
prokMSA_id:77318 AF482439 clone R3p4 
2.28.4.10.16193 OTU 1 seq
prokMSA_id:77303 AF524857 K-4b1 
2.28.4.10.17105 OTU 1 seq
prokMSA_id:39526 AJ316023 Desulfomonile sp. clone 650
2.28.4.10.17216 OTU 1 seq
prokMSA_id:38917 AF419675 a1b020 
2.28.4.10.18870 OTU 1 seq
prokMSA_id:63260 AF523960 clone FW57 
2.28.4.10.18877 OTU 1 seq
prokMSA_id:63265 AF523958 clone FW133 
2.28.4.10.2012 OTU 1 seq
prokMSA_id:42281 AF351231 Nitrospira sp. clone 4-29 
2.28.4.10.21348 OTU 1 seq
prokMSA_id:25647 AF419676 a2b002 
2.28.4.10.27595 OTU 2 seqs
prokMSA_id:30060 AF282177 Desulfomonile limimaris 
prokMSA_id:36808 AF230531 Desulfomonile limimaris 
2.28.4.10.2908 OTU 1 seq
prokMSA_id:71864 AF418174 Desulfoarculus baarsii DSM 2075 
2.28.4.10.31576 OTU 2 seqs
prokMSA_id:70282 AF170417 Desulfacinum hydrothermale 
prokMSA_id:73225 AF170418 Desulfacinum sp. M40/2 CIV-2.3 
2.28.4.10.33098 OTU 2 seqs
prokMSA_id:25091 AJ316024 Desulfomonile sp. clone 651
prokMSA_id:42269 AJ316021 Desulfomonile sp. clone 624
2.28.4.10.4524 OTU 1 seq
prokMSA_id:41940 AF402972 Thermus sp. clone 
2.28.4.10.5712 OTU 1 seq
prokMSA_id:74022 AF419677 a2b033 
2.28.4.10.593 OTU 1 seq
prokMSA_id:10750 X70905 Syntrophobacter wolinii
2.28.4.10.599 OTU 1 seq
prokMSA_id:10752 X82874 Syntrophobacter fumaroxidans str. MPOB DSM 10017
2.28.4.10.604 OTU 1 seq
prokMSA_id:10753 AJ009502 clone SJA-172
2.28.4.10.607 OTU 1 seq
prokMSA_id:10754 AJ237605 Syntrophobacter sp. str. TsuA1
2.28.4.10.610 OTU 1 seq
prokMSA_id:10755 X94911 Syntrophobacter sp
2.28.4.10.612 OTU 1 seq
prokMSA_id:10756 AJ241015 clone Sva0812b
2.28.4.10.617 OTU 1 seq
prokMSA_id:10759 X83274 Desulforhabdus amnigenus str. ASRB1
2.28.4.10.624 OTU 1 seq
prokMSA_id:10760 U49429 str. PRTOL1
2.28.4.10.626 OTU 1 seq
prokMSA_id:10761 AJ012597 unnamed organism
2.28.4.10.630 OTU 1 seq
prokMSA_id:10765 AF026989 clone OPB78
2.28.4.10.647 OTU 1 seq
prokMSA_id:10771 AF026998 clone OPB16
2.28.4.10.652 OTU 1 seq
prokMSA_id:10775 U85477 Desulfoarculus BG74 str. BG74
2.28.4.10.7892 OTU 1 seq
prokMSA_id:28552 AF385080 Desulfacinum subterraneum 
2.28.4.10.8580 OTU 1 seq
prokMSA_id:36463 AF254397 UASB_TL11 complete 
2.28.4.11 DBB.PROPIONICUS_ASSEMBLAGE 80 seqs
2.28.4.11.11953 OTU 1 seq
prokMSA_id:76068 AJ518791 delta clone JG37-AG-30
2.28.4.11.122 OTU 1 seq
prokMSA_id:78710 AY177794 Desulfocapsa sp. clone SB1_17 
2.28.4.11.129 OTU 1 seq
prokMSA_id:79377 AB100004 sequences clone: IndB2-42
2.28.4.11.1295 OTU 1 seq
prokMSA_id:10811 AJ237602 Desulfobacterium catecholicum DSM 3882
2.28.4.11.1301 OTU 1 seq
prokMSA_id:10818 AF099061 str. LSv514
2.28.4.11.1302 OTU 1 seq
prokMSA_id:10819 AF099062 str. LSv54
2.28.4.11.1311 OTU 1 seq
prokMSA_id:10820 AB015588 str. BD7-15
2.28.4.11.1315 OTU 1 seq
prokMSA_id:10827 AJ241013 clone Sva0999
2.28.4.11.1317 OTU 1 seq
prokMSA_id:10829 U12253 Desulfobulbus rhabdoformis str. M16 DSM 8777
2.28.4.11.1328 OTU 1 seq
prokMSA_id:10832 U65915 clone Sar276
2.28.4.11.1327 OTU 1 seq
prokMSA_id:10831 AF099055 str. LSv55
2.28.4.11.1326 OTU 1 seq
prokMSA_id:10830 U85473 Desulfobulbus BG25 str. BG25
2.28.4.11.1331 OTU 1 seq
prokMSA_id:10834 AB013265 str. NKB13
2.28.4.11.1334 OTU 1 seq
prokMSA_id:10837 AJ241011 clone Sva0631
2.28.4.11.1337 OTU 1 seq
prokMSA_id:10839 X99707 Desulfofustis glycolicus str. PerGlyS
2.28.4.11.1348 OTU 1 seq
prokMSA_id:10840 AJ007373 str. WH26
2.28.4.11.14911 OTU 1 seq
prokMSA_id:75871 AJ518799 delta clone JG37-AG-118
2.28.4.11.157 OTU 1 seq
prokMSA_id:78728 AY177796 Desulforhopalus sp. clone SB1_68 
2.28.4.11.16806 OTU 1 seq
prokMSA_id:62385 AF529133 delta clone FTLpost26 
2.28.4.11.1756 OTU 1 seq
prokMSA_id:78959 AY177802 Desulforhopalus sp. clone SB4_58 
2.28.4.11.17687 OTU 1 seq
prokMSA_id:61884 AF449226 delta clone R103-B53 
2.28.4.11.17682 OTU 1 seq
prokMSA_id:61881 AF449228 delta clone R103-B27 
2.28.4.11.18041 OTU 1 seq
prokMSA_id:70322 AF200962 Psychrophilic sulfate-reducing LSv22 
2.28.4.11.18248 OTU 1 seq
prokMSA_id:78211 AJ535220 delta clone Hyd01-14
2.28.4.11.18401 OTU 1 seq
prokMSA_id:77619 AJ535252 delta clone Hyd89-51
2.28.4.11.18660 OTU 1 seq
prokMSA_id:71031 AF420335 isolate a2b016 
2.28.4.11.19184 OTU 1 seq
prokMSA_id:77746 AJ535242 delta clone Hyd01-30
2.28.4.11.19168 OTU 1 seq
prokMSA_id:78398 AJ535241 delta clone Hyd24-11
2.28.4.11.19216 OTU 1 seq
prokMSA_id:77760 AJ535237 delta clone Hyd01-n
2.28.4.11.19298 OTU 1 seq
prokMSA_id:69919 AF420334 isolate a1b009 
2.28.4.11.19323 OTU 1 seq
prokMSA_id:71121 AF354149 delta isolate Eel-BE1A3 
2.28.4.11.19857 OTU 1 seq
prokMSA_id:77808 AJ535238 delta clone Hyd24-21
2.28.4.11.20072 OTU 1 seq
prokMSA_id:71200 AF354148 delta isolate Eel-TE1B5 
2.28.4.11.20346 OTU 1 seq
prokMSA_id:79101 AJ431236 Cytophaga sp. BHI60-57B strain BHI60-57B
2.28.4.11.20753 OTU 1 seq
prokMSA_id:77915 AJ535236 delta clone Hyd24-08
2.28.4.11.20797 OTU 1 seq
prokMSA_id:77927 AJ535251 delta clone Hyd89-40
2.28.4.11.20832 OTU 1 seq
prokMSA_id:77940 AJ535243 delta clone Hyd24-30
2.28.4.11.21544 OTU 1 seq
prokMSA_id:78670 AY177798 Desulfocapsa sp. clone SB1_88 
2.28.4.11.28195 OTU 3 seqs
prokMSA_id:10809 L42613 Desulforhopalus vacuolatus str. ltk10
prokMSA_id:10814 AF099057 Desulforhopalus LSv20 str. LSv20
prokMSA_id:72238 L42613 Desulforhopalus vacuolatus 
2.28.4.11.29112 OTU 2 seqs
prokMSA_id:10798 AJ389624 clone 141
prokMSA_id:40598 AJ307943 mRNA clone sipK93
2.28.4.11.29200 OTU 3 seqs
prokMSA_id:10791 AJ240984 clone Sva1041
prokMSA_id:10833 AB015515 str. BD1-2
prokMSA_id:10836 AJ240978 clone Sva0103
2.28.4.11.31388 OTU 2 seqs
prokMSA_id:10787 X95180 Desulfobulbus elongatus str. FP DSM 2908
prokMSA_id:77552 AF482433 clone R1p15 
2.28.4.11.31389 OTU 2 seqs
prokMSA_id:61880 AF449229 delta clone R103-B13 
prokMSA_id:61882 AF449227 delta clone R103-B54 
2.28.4.11.31708 OTU 2 seqs
prokMSA_id:41043 AY005037 Desulfobulbus sp. oral clone R004 
prokMSA_id:47698 AY005036 Desulfobulbus sp. oral clone CH031 
2.28.4.11.3194 OTU 1 seq
prokMSA_id:80324 AY193139 clone Bol88 
2.28.4.11.32338 OTU 6 seqs
prokMSA_id:10815 AF099058 str. LSv53
prokMSA_id:10816 AF099059 str. LSv23
prokMSA_id:10817 AF099060 str. LSv24
prokMSA_id:10821 AB015241 str. JTB20
prokMSA_id:10828 AJ241014 str. LSv53
prokMSA_id:78896 AY177797 Desulforhopalus sp. clone SB1_78 
2.28.4.11.33805 OTU 2 seqs
prokMSA_id:19356 AY050586 clone GOUTA17 
prokMSA_id:59934 AY133065 clone ccs202 
2.28.4.11.3975 OTU 1 seq
prokMSA_id:81065 AY216457 clone KM85 
2.28.4.11.40335 OTU 2 seqs
prokMSA_id:77788 AJ535230 delta clone Hyd01-07
prokMSA_id:78284 AJ535218 delta clone Hyd01-17
2.28.4.11.41329 OTU 3 seqs
prokMSA_id:67777 AF420366 isolate C1_B030 
prokMSA_id:73292 AF420368 isolate C1_B040 
prokMSA_id:73580 AF420365 isolate C1_B029 
2.28.4.11.42327 OTU 4 seqs
prokMSA_id:10800 AJ389626 clone 282
prokMSA_id:10802 AJ389628 clone 348
prokMSA_id:10803 AJ389629 clone 368
prokMSA_id:69671 AJ511275 Desulfocapsa sp. Cad626 
2.28.4.11.42514 OTU 2 seqs
prokMSA_id:10823 AJ240990 clone Sva1036
prokMSA_id:10824 AJ240992 clone Sva1037
2.28.4.11.5794 OTU 1 seq
prokMSA_id:74052 AF354166 delta isolate Eel-36e1D7 
2.28.4.11.6568 OTU 1 seq
prokMSA_id:44052 AJ296571 GR-Sh2-18 clone GR-Sh2-18
2.28.4.11.682 OTU 1 seq
prokMSA_id:10788 AJ012591 unnamed organism
2.28.4.11.702 OTU 1 seq
prokMSA_id:10792 X95181 Desulfocapsa thiozymogenes str. Bra2 DSM 7269
2.28.4.11.705 OTU 1 seq
prokMSA_id:10793 AF050536 clone WCHB1-67
2.28.4.11.708 OTU 1 seq
prokMSA_id:10794 Y13672 Desulfocapsa sulfoexigens str. SB164P1
2.28.4.11.7987 OTU 1 seq
prokMSA_id:82114 AY216446 clone KM15 
2.28.4.12 SYNTROPHUS_GROUP 27 seqs
2.28.4.12.1038 OTU 1 seq
prokMSA_id:48781 AF229780 TA07 
2.28.4.12.11709 OTU 1 seq
prokMSA_id:66928 AJ306771 clone SHA-42
2.28.4.12.1351 OTU 1 seq
prokMSA_id:10845 AJ009471 clone SJA-63
2.28.4.12.1354 OTU 1 seq
prokMSA_id:10849 X85132 Syntrophus gentianae str. HQGoe1 DSM 8423
2.28.4.12.1365 OTU 1 seq
prokMSA_id:10850 AF050534 clone WCHB1-12
2.28.4.12.1368 OTU 1 seq
prokMSA_id:10857 AJ133794 Syntrophus sp
2.28.4.12.15688 OTU 1 seq
prokMSA_id:23625 AF371949 clone p-4193-6Wa5 
2.28.4.12.18858 OTU 1 seq
prokMSA_id:63258 AF523966 clone FW99 
2.28.4.12.18873 OTU 1 seq
prokMSA_id:63262 AF523957 clone FW117 
2.28.4.12.20441 OTU 1 seq
prokMSA_id:56266 AJ306775 clone SHA-79
2.28.4.12.20690 OTU 1 seq
prokMSA_id:24941 AF254392 UASB_TL12 complete 
2.28.4.12.32376 OTU 2 seqs
prokMSA_id:10858 AJ133795 Syntrophus sp
prokMSA_id:10859 AJ133796 Syntrophus sp
2.28.4.12.32418 OTU 2 seqs
prokMSA_id:19918 AF351212 delta clone 12-2 
prokMSA_id:39383 AF351238 delta clone 8-45 
2.28.4.12.33822 OTU 3 seqs
prokMSA_id:10853 X87269 clone 7
prokMSA_id:10860 AF126282 Smithella propionica str. LYP
prokMSA_id:77388 AF482441 clone R4b16 
2.28.4.12.33858 OTU 3 seqs
prokMSA_id:10844 X85131 Syntrophus buswellii str. DM-3 DSM 02612
prokMSA_id:10846 U81674 clone vadinBC38
prokMSA_id:27573 AF323763 clone BA039 complete 
2.28.4.12.42032 OTU 3 seqs
prokMSA_id:18138 AF323776 clone BA053 complete 
prokMSA_id:32886 AF323766 clone BA044 complete 
prokMSA_id:37165 AF229793 TA20 
2.28.4.12.475 OTU 1 seq
prokMSA_id:71533 AF323779 clone BA069 complete 
2.28.4.12.6393 OTU 1 seq
prokMSA_id:34985 AY053494 AT425_EubF5 
2.28.4.12.8100 OTU 1 seq
prokMSA_id:21347 AF351220 delta clone 36-11 
2.28.4.13 DESULFOBACTER_GROUP 95 seqs
2.28.4.13.1 DSF.LIMICOLA_SUBGROUP 24 seqs
2.28.4.13.1.11421 OTU 1 seq
prokMSA_id:45289 AF354164 delta isolate Eel-36e1H1 
2.28.4.13.1.1386 OTU 1 seq
prokMSA_id:10867 AF022936 Desulfocella halophila str. GSL-But2
2.28.4.13.1.1387 OTU 1 seq
prokMSA_id:10869 U45989 Desulfonema magnum str. Montpellier DSM 2077
2.28.4.13.1.1402 OTU 1 seq
prokMSA_id:10870 AJ237607 Desulfobacterium indolicum str. marine mud DSM 3383
2.28.4.13.1.1406 OTU 1 seq
prokMSA_id:10876 AF177428 str. S2551
2.28.4.13.1.1405 OTU 1 seq
prokMSA_id:10875 AJ012595 unnamed organism
2.28.4.13.1.14453 OTU 1 seq
prokMSA_id:24077 AF418173 Desulfococcus multivorans DSM 2059 
2.28.4.13.1.15941 OTU 1 seq
prokMSA_id:46593 AJ277887 Desulfococcus biacutus strain DSM 5651T
2.28.4.13.1.17472 OTU 1 seq
prokMSA_id:78122 AJ535235 delta clone Hyd89-21
2.28.4.13.1.18310 OTU 1 seq
prokMSA_id:31848 AF243334 Desulforegula conservatrix 
2.28.4.13.1.18733 OTU 1 seq
prokMSA_id:70417 AF354158 delta isolate SB-24e1C6 
2.28.4.13.1.20042 OTU 1 seq
prokMSA_id:77873 AJ535249 delta clone Hyd89-61
2.28.4.13.1.20664 OTU 1 seq
prokMSA_id:18378 AF354165 delta isolate Eel-36e1H6 
2.28.4.13.1.2106 OTU 1 seq
prokMSA_id:71766 AF354151 delta isolate Eel-BE1B3 
2.28.4.13.1.21256 OTU 1 seq
prokMSA_id:70799 AF354160 delta isolate SB-24e1B12 
2.28.4.13.1.3057 OTU 1 seq
prokMSA_id:19549 AF328857 Olavius algarvensis sulfate-reducing endosymbiont 
2.28.4.13.1.31472 OTU 2 seqs
prokMSA_id:10878 AJ240975 clone Sva0081
prokMSA_id:10879 AJ240977 clone Sva0863
2.28.4.13.1.33142 OTU 3 seqs
prokMSA_id:10866 Y17501 str. Pnd3
prokMSA_id:47033 AF468969 Delta S2552 
prokMSA_id:50635 AF148141 Delta S2550 
2.28.4.13.1.4119 OTU 1 seq
prokMSA_id:73235 AF420350 isolate CS_B014 
2.28.4.13.1.6560 OTU 1 seq
prokMSA_id:81354 AY216443 clone KM88 
2.28.4.13.1.8141 OTU 1 seq
prokMSA_id:81529 AY216453 clone KM62 
2.28.4.13.2 DSS.VARIABILIS_SUBGROUP 35 seqs
2.28.4.13.2.13763 OTU 1 seq
prokMSA_id:67851 AY082457 delta clone 44a-B1-10 
2.28.4.13.2.1423 OTU 1 seq
prokMSA_id:10886 AF121886 clone 2BP-6
2.28.4.13.2.1444 OTU 1 seq
prokMSA_id:10890 AJ006853 str. mXyS
2.28.4.13.2.1446 OTU 1 seq
prokMSA_id:10891 AF141328 str. AK-01
2.28.4.13.2.1448 OTU 1 seq
prokMSA_id:10893 U81720 clone vadinHA60
2.28.4.13.2.1452 OTU 1 seq
prokMSA_id:10899 AF154102 clone GCA017
2.28.4.13.2.1509 OTU 1 seq
prokMSA_id:79514 AY184360 Desulfobacillum aliphatovorans strain CV2803 
2.28.4.13.2.16866 OTU 1 seq
prokMSA_id:78056 AJ535247 delta clone Hyd89-22
2.28.4.13.2.175 OTU 1 seq
prokMSA_id:78733 AY177788 Desulfosarcina sp. clone SB1_34 
2.28.4.13.2.18106 OTU 1 seq
prokMSA_id:40264 AJ132804 delta NaphS2 
2.28.4.13.2.18338 OTU 1 seq
prokMSA_id:17424 AF286034 Saltmarsh clone LCP-80 
2.28.4.13.2.19063 OTU 1 seq
prokMSA_id:78353 AJ535248 delta clone Hyd89-63
2.28.4.13.2.20210 OTU 1 seq
prokMSA_id:39986 AY053490 AT425_EubD9 
2.28.4.13.2.2047 OTU 1 seq
prokMSA_id:10900 AF099063 str. PSv29
2.28.4.13.2.2048 OTU 1 seq
prokMSA_id:10901 AF099064 str. ASv26
2.28.4.13.2.2051 OTU 1 seq
prokMSA_id:10904 AF029045 clone SB-21
2.28.4.13.2.2052 OTU 1 seq
prokMSA_id:10905 AF029047 clone SB-29
2.28.4.13.2.2049 OTU 1 seq
prokMSA_id:10902 AF099065 str. LSv21
2.28.4.13.2.2050 OTU 1 seq
prokMSA_id:10903 AJ012596 unnamed organism
2.28.4.13.2.2056 OTU 1 seq
prokMSA_id:10908 AJ241002 clone Sva0516
2.28.4.13.2.2057 OTU 1 seq
prokMSA_id:10909 AJ241022 clone Sva0405
2.28.4.13.2.2054 OTU 1 seq
prokMSA_id:10906 AF029048 clone SB-30
2.28.4.13.2.21289 OTU 1 seq
prokMSA_id:32846 AF354147 delta isolate Eel-BE1C3 
2.28.4.13.2.21533 OTU 1 seq
prokMSA_id:78667 AY177791 Desulfosarcina sp. clone SB4_53 
2.28.4.13.2.21900 OTU 1 seq
prokMSA_id:70859 AF354163 delta isolate Eel-36e1G12 
2.28.4.13.2.29622 OTU 2 seqs
prokMSA_id:10897 U45991 Desulfonema ishimotoei str. from anaerobic mud of the intert
prokMSA_id:10898 U45992 Desulfonema ishimotoei str. from anaerobic marine mud of Tok
2.28.4.13.2.31488 OTU 3 seqs
prokMSA_id:10887 M34407 Desulfosarcina variabilis str. 3 be 13 Montpellier DSM 2060
prokMSA_id:10888 AJ237603 Desulfobacterium cetonicum str. oil recovery water DSM 7267
prokMSA_id:10889 Y17286 str. oXyS1
2.28.4.13.2.3768 OTU 1 seq
prokMSA_id:71994 AF321820 Desulfomusa hansenii 
2.28.4.13.2.4428 OTU 1 seq
prokMSA_id:65440 AJ430774 Delta EbS7 strain EbS7
2.28.4.13.2.5711 OTU 1 seq
prokMSA_id:74021 AY083017 delta clone SLM-CP-116 
2.28.4.13.2.8117 OTU 1 seq
prokMSA_id:52092 AF084855 Bdellovibrio sp. AQ 
2.28.4.13.2.9637 OTU 1 seq
prokMSA_id:82326 AY216442 clone KM95 
2.28.4.13.7 DSB.POSTGATEI_SUBGROUP 36 seqs
2.28.4.13.7.11154 OTU 1 seq
prokMSA_id:28971 AF249834 Delta S2450 
2.28.4.13.7.11586 OTU 1 seq
prokMSA_id:67544 AJ441315 Desulfobacter latus strain DSM 3381
2.28.4.13.7.1210 OTU 1 seq
prokMSA_id:71601 AF418177 Desulfobacterium autotrophicum DSM 3382 
2.28.4.13.7.127 OTU 1 seq
prokMSA_id:78718 AY177803 Desulfobacula sp. clone SB4_98 
2.28.4.13.7.16701 OTU 1 seq
prokMSA_id:70182 AF420349 isolate CS_B008 
2.28.4.13.7.1847 OTU 1 seq
prokMSA_id:78986 AY177800 Desulfobacula sp. clone SB2_56 
2.28.4.13.7.19721 OTU 1 seq
prokMSA_id:78421 AY177799 Desulfobacteraceae 
2.28.4.13.7.20555 OTU 1 seq
prokMSA_id:78513 AY177795 Desulfobacula sp. clone SB1_49 
2.28.4.13.7.2074 OTU 1 seq
prokMSA_id:10922 U12254 Desulfobacter vibrioformis str. B54 DSMZ 8776
2.28.4.13.7.2080 OTU 1 seq
prokMSA_id:10925 U85476 Desulfobacter BG72 str. BG72
2.28.4.13.7.2082 OTU 1 seq
prokMSA_id:10926 Y14745 Desulfobacter halotolerans
2.28.4.13.7.2083 OTU 1 seq
prokMSA_id:10927 U51844 unnamed organism
2.28.4.13.7.20866 OTU 1 seq
prokMSA_id:47877 AF418178 Desulfobacterium vacuolatum DSM 3385 
2.28.4.13.7.2085 OTU 1 seq
prokMSA_id:10928 AF099054 Desulfobacter ASv25 str. ASv25
2.28.4.13.7.2097 OTU 1 seq
prokMSA_id:10935 U85474 Desulfobacterium BG33 str. BG33
2.28.4.13.7.2094 OTU 1 seq
prokMSA_id:10934 U85470 Desulfobotulus BG14 str. BG14
2.28.4.13.7.2101 OTU 1 seq
prokMSA_id:10937 U51845 Desulfobacterium niacini str. PM4
2.28.4.13.7.2104 OTU 1 seq
prokMSA_id:10938 AF099056 Desulfobacterium LSv25 str. LSv25
2.28.4.13.7.2107 OTU 1 seq
prokMSA_id:10939 AB015244 str. JTB133
2.28.4.13.7.2121 OTU 1 seq
prokMSA_id:10940 X99637 Desulfospira joergensenii str. B331 DSM 10085
2.28.4.13.7.2123 OTU 1 seq
prokMSA_id:10941 U85471 Desulfobacterium BG18 str. BG18
2.28.4.13.7.2126 OTU 1 seq
prokMSA_id:10942 AF029042 clone SB-9
2.28.4.13.7.2128 OTU 1 seq
prokMSA_id:10943 AF136008 Desulfobacterium BSv41 str. BSv41
2.28.4.13.7.29608 OTU 5 seqs
prokMSA_id:10929 AF177429 str. S2651
prokMSA_id:31826 AF233370 Desulfotignum balticum 
prokMSA_id:40669 AJ132720 CHA3-118 clone CHA3-118
prokMSA_id:51719 AF418176 Desulfotignum balticum DSM 7044 
prokMSA_id:52280 AJ132719 CHA3-100 clone CHA3-100
2.28.4.13.7.29603 OTU 2 seqs
prokMSA_id:10923 U85469 Desulfobacter BG8 str. BG8
prokMSA_id:10924 U85472 Desulfobacter BG23 str. BG23
2.28.4.13.7.32084 OTU 3 seqs
prokMSA_id:10933 X70953 Desulfobacula toluolica str. Tol2 DSM 7467
prokMSA_id:10936 AJ237606 Desulfobacterium phenolicum str. marine mud DSM 3384
prokMSA_id:67542 AJ441316 Desulfobacula toluolica strain DSM 7467
2.28.4.13.7.40617 OTU 2 seqs
prokMSA_id:59113 AF420288 Desulfotignum phosphitoxidans strain FiPS3 
prokMSA_id:59114 AF420289 Desulfotignum phosphitoxidans strain FiPS5 
2.28.4.13.7.6695 OTU 1 seq
prokMSA_id:74171 AF418175 Desulfobacter curvatus DSM 3379 
2.28.4.99 VARIOUS 7 seqs
2.28.4.99.40168 OTU 4 seqs
prokMSA_id:67800 AF420337 isolate a1b003 
prokMSA_id:74078 AF354156 delta isolate Eel-TE1B1 
prokMSA_id:77769 AJ535253 delta clone Hyd89-29
prokMSA_id:77896 AJ535254 delta clone Hyd89-52
2.28.4.99.42501 OTU 3 seqs
prokMSA_id:48110 AF225446 BA18 
prokMSA_id:56683 AF543496 clone AS6 
prokMSA_id:58310 AF543506 clone BA9 
2.28.5 EPSILON_SUBDIVISION 480 seqs
2.28.5.1 HELICOBACTER_AND_RELATIVES 200 seqs
2.28.5.1.1 HLB.PYLORI_SUBGROUP 198 seqs
2.28.5.1.1.17828 OTU 1 seq
prokMSA_id:39617 AF316120 Cilia-associated respiratory B6 
2.28.5.1.1.20003 OTU 1 seq
prokMSA_id:11008 AF142150 Helicobacter 'pig E1'
2.28.5.1.1.20111 OTU 1 seq
prokMSA_id:11050 U46129 Helicobacter cholecystus str. Hkb-1 ATCC 700242
2.28.5.1.1.20098 OTU 1 seq
prokMSA_id:11042 U07573 Helicobacter hepaticus str. Fox Hh-1 ATCC 51449
2.28.5.1.1.2252 OTU 1 seq
prokMSA_id:10978 AB015569 str. BD5-13
2.28.5.1.1.2269 OTU 1 seq
prokMSA_id:10980 AF127027 Helicobacter bovis
2.28.5.1.1.2279 OTU 1 seq
prokMSA_id:10984 AJ224539 str. clone koll6
2.28.5.1.1.26125 OTU 2 seqs
prokMSA_id:28676 AF264783 Helicobacter sp. w-06 
prokMSA_id:81888 AF354055 Helicobacter sp. WYS-2001 
2.28.5.1.1.35454 OTU 184 seqs
prokMSA_id:10946 U01330 Helicobacter pylori ATCC 43504
prokMSA_id:10949 AE000511 Helicobacter pylori str. 26695 =
prokMSA_id:10950 L36142 Helicobacter pullorum NCTC 12825
prokMSA_id:10951 M88142 Helicobacter pametensis str. Seymour B15 CCUG 29259
prokMSA_id:10952 M88157 Helicobacter pylori ATCC 43504
prokMSA_id:10957 AE000511 Helicobacter pylori str. 26695 =rrnB
prokMSA_id:10958 U01328 Helicobacter pylori str. MC123
prokMSA_id:10959 AF142586 Helicobacter 'liver 4' str. liver 4
prokMSA_id:10964 U65103 Helicobacter trogontum str. LRB 8581
prokMSA_id:10966 Y09404 Helicobacter bizzozeronii CCUG 35045
prokMSA_id:10967 U51870 Helicobacter felis str. Dog-1
prokMSA_id:10968 Y09405 Helicobacter salomonis str. 4
prokMSA_id:10969 Y18028 Helicobacter heilmannii str. AF53
prokMSA_id:10973 U00679 Helicobacter pylori str. 85D08 ATCC 51407
prokMSA_id:10974 AF057163 Helicobacter sp
prokMSA_id:10975 AF142583 Helicobacter 'liver 1' str. liver 1
prokMSA_id:10976 L39122 Helicobacter hepaticus str. FRED1
prokMSA_id:10982 L36141 Helicobacter pullorum NCTC 12824
prokMSA_id:10983 U96296 Helicobacter rodentium str. MIT 95-1707 ATCC 700285
prokMSA_id:10985 AF000221 Helicobacter 'Robertson ANO1' str. Robertson ANO1
prokMSA_id:10986 AF000222 Helicobacter 'Robertson ANO2' str. Robertson ANO2
prokMSA_id:10987 AF000223 Helicobacter 'Robertson ANO3' str. Robertson ANO3
prokMSA_id:10988 AF000224 Helicobacter 'Robertson ANO4' str. Robertson ANO4
prokMSA_id:10989 AF072471 Helicobacter mesocricetus str. MU97-1514
prokMSA_id:10990 U96297 Helicobacter rodentium str. MIT 96-1312
prokMSA_id:10991 U96298 Helicobacter 'MIT 95-2011' str. MIT 95-2011
prokMSA_id:10992 U96299 Helicobacter 'Eaton 94-536' str. Eaton 94-536
prokMSA_id:10999 L10080 "Gastrospirillum hominis" str. 2
prokMSA_id:11000 AF142152 Helicobacter 'pig C2'
prokMSA_id:11003 AF127028 Helicobacter suis
prokMSA_id:11004 AF142146 Helicobacter 'pig A2'
prokMSA_id:11005 AF142147 Helicobacter 'pig B1'
prokMSA_id:11006 AF142148 Helicobacter 'pig B6'
prokMSA_id:11007 AF142149 Helicobacter 'pig D7'
prokMSA_id:11009 AF142151 Helicobacter 'pig F8'
prokMSA_id:11013 Z25741 Helicobacter pylori NCTC 11637
prokMSA_id:11015 AB006147 Helicobacter suncus str. Kaz-1
prokMSA_id:11016 AB006148 Helicobacter suncus str. Kaz-2
prokMSA_id:11017 U08906 Helicobacter pylori str. D01
prokMSA_id:11018 U01331 Helicobacter pylori str. MC937
prokMSA_id:11021 AF034135 Flexispira rappini str. FH 9702248
prokMSA_id:11022 AF118017 Flexispira rappini str. H1353
prokMSA_id:11023 AF023862 Helicobacter sp
prokMSA_id:11026 U89351 Helicobacter salomonis str. Inkinen CCUG 37845
prokMSA_id:11027 AF103879 Helicobacter felis str. 937-12
prokMSA_id:11028 AF103880 Helicobacter felis str. 390-9
prokMSA_id:11029 AF103881 Helicobacter felis str. 144-10
prokMSA_id:11030 AF103882 Helicobacter felis str. 1136-7
prokMSA_id:11031 AF103883 Helicobacter bizzozeronii str. 865-2
prokMSA_id:11032 U51871 Helicobacter felis str. Dog-2 Eaton 2301
prokMSA_id:11033 U51872 Helicobacter felis str. Dog-3 Eaton 1602
prokMSA_id:11034 AF058768 Helicobacter heilmannii str. 1
prokMSA_id:11040 AF010140 Helicobacter muridarum str. UNSW 1.7st
prokMSA_id:11041 AF013464 Helicobacter muridarum str. UNSW 1.6cae
prokMSA_id:11044 L36144 Helicobacter pullorum NCTC 12827
prokMSA_id:11047 U96300 Helicobacter 'ATCC 43968' ATCC 43968
prokMSA_id:11053 U44756 Helicobacter sp
prokMSA_id:11056 U01329 Helicobacter pylori str. MC238
prokMSA_id:11060 U18766 Helicobacter bilis str. Hb1 ATCC 51630
prokMSA_id:11062 L13464 Helicobacter canis NCTC 12739
prokMSA_id:11063 AF142062 Helicobacter 'feline isolate'
prokMSA_id:11064 AF177475 Helicobacter canis str. MIT 98-152
prokMSA_id:11067 L36143 Helicobacter pullorum NCTC 12826
prokMSA_id:11068 U18767 Helicobacter bilis str. Hb2 ATCC 51631
prokMSA_id:11069 AF118807 Flexispira CDC-H69 str. CDC-H69
prokMSA_id:11070 AF116577 Helicobacter VA str. VA
prokMSA_id:11080 X67854 Helicobacter nemestrinae str. T81213-NTB ATCC 49396
prokMSA_id:11084 U01332 Helicobacter pylori str. MC903
prokMSA_id:11085 AF142585 Helicobacter 'liver 3' str. liver 3
prokMSA_id:11086 Z25742 Helicobacter pylori NCTC 11638
prokMSA_id:11088 U04344 Helicobacter canis NCTC 12220
prokMSA_id:16301 AF107494 Helicobacter sp. 'MIT 97-6194-5' 
prokMSA_id:16388 AF246986 Helicobacter winghamensis NLEP 98-202 
prokMSA_id:16734 AF371869 clone p-4283-4Wa3 
prokMSA_id:17350 AF348748 Helicobacter cinaedi strain CCUG 18818 
prokMSA_id:17771 AF334681 Helicobacter cf. pullorum strain W.Tee-Cro 
prokMSA_id:19502 AF363063 Helicobacter winghamensis strain NLEP 98-0305 
prokMSA_id:19560 AF246987 Helicobacter winghamensis NLEP 98-2021 
prokMSA_id:19959 U65102 Helicobacter canis 
prokMSA_id:19975 AF054570 Helicobacter bilis strain HRI3caefr 
prokMSA_id:20336 AF363062 Helicobacter winghamensis strain NLEP 97-1611 
prokMSA_id:20805 AF207738 Helicobacter cinaedi strain CCUG 33887 
prokMSA_id:20816 AF396078 Helicobacter cinaedi isolate 30327 
prokMSA_id:23629 AF047851 Helicobacter sp. 'Flexispira taxon 8' strain ATCC 49317 
prokMSA_id:24309 AF455130 Helicobacter cetorum MIT 00-7128 
prokMSA_id:24587 AF426158 Helicobacter cinaedi isolate 30527 
prokMSA_id:25488 AF302104 Helicobacter muridarum 
prokMSA_id:26344 AJ249855 Helicobacter sp. isolate 1199
prokMSA_id:26677 AF237612 Helicobacter sp. Wee Tee 
prokMSA_id:26749 AF320621 Helicobacter sp. MIT 98-5357 complete 
prokMSA_id:26909 AJ249857 Helicobacter sp. isolate 1058
prokMSA_id:27055 AF333339 Helicobacter sp. MIT 99-5504 
prokMSA_id:27482 AF207737 Helicobacter cinaedi strain ADN 0413 
prokMSA_id:27532 AF363064 Helicobacter nemestrinae strain ATCC49396 
prokMSA_id:28820 U51873 Helicobacter bilis 
prokMSA_id:28994 AF225548 Helicobacter sp. 'Flexispira taxon 4' 
prokMSA_id:29701 AF286053 Helicobacter rappini W.Tee-Yu 
prokMSA_id:29786 AF302762 Flexispira rappini and intervening 
prokMSA_id:29878 AF072333 Helicobacter sp. 'hamster B' 
prokMSA_id:30026 AF396079 Helicobacter cinaedi isolate 30365 
prokMSA_id:30515 AF246984 Helicobacter winghamensis NLEP 97-1090 
prokMSA_id:31244 AF336947 Helicobacter sp. MIT 98-1705 
prokMSA_id:31459 AF348617 Helicobacter nemestrinae 
prokMSA_id:31862 AY009132 Helicobacter sp. YMRC 000428 
prokMSA_id:31915 AF302106 Helicobacter pylori 
prokMSA_id:32695 AF225549 Helicobacter sp. 'Flexispira taxon 8' 
prokMSA_id:32900 AF336948 Helicobacter sp. MIT 95-234-6 
prokMSA_id:34144 AF333338 Helicobacter sp. MIT 99-5501 
prokMSA_id:34757 AY009129 Helicobacter apodemus strain YMRC 000216 
prokMSA_id:36371 AF333341 Helicobacter sp. MIT 98-6070 
prokMSA_id:36424 AY009131 Helicobacter sp. YMRC 000427 
prokMSA_id:36626 AF361935 Helicobacter pylori 
prokMSA_id:37836 AY009130 Helicobacter apodemus strain YMRC 00419 
prokMSA_id:38896 AJ249856 Helicobacter sp. isolate 3028
prokMSA_id:39557 AF286052 Helicobacter rappini W.Tee-Bat 
prokMSA_id:40721 AY034821 Helicobacter rappini strain H 157 S 
prokMSA_id:41542 AJ249858 Helicobacter sp. isolate 964
prokMSA_id:44759 AF396082 Helicobacter cinaedi isolate 30314 
prokMSA_id:46045 AF054571 Helicobacter bilis strain HRI6caefr 
prokMSA_id:47191 AF302107 Helicobacter bizzozeronii 
prokMSA_id:47556 AY034820 Helicobacter rappini strain H 95 S 
prokMSA_id:47586 AF054572 Helicobacter bilis strain HRI7stomfr 
prokMSA_id:47656 AJ249852 Helicobacter sp. isolate 2634
prokMSA_id:47790 AF072334 Helicobacter mesocricetorum 
prokMSA_id:48289 AF297868 Helicobacter aurati complete 
prokMSA_id:48498 AF054578 Helicobacter sp. UNSW1.7sp 
prokMSA_id:49270 AF396081 Helicobacter cinaedi isolate 31111 
prokMSA_id:49528 AF246985 Helicobacter winghamensis NLEP 98-2019 
prokMSA_id:49662 AF127912 Helicobacter sp
prokMSA_id:49735 AF333340 Helicobacter sp. MIT 99-5507 
prokMSA_id:49754 AJ011431 Helicobacter sp. strain MZ 640285
prokMSA_id:50310 AF302105 Helicobacter pametensis 
prokMSA_id:50875 AF302103 Helicobacter hepaticus 
prokMSA_id:52884 AF284754 Helicobacter apodemus 
prokMSA_id:52966 AF246988 Helicobacter winghamensis NLEP 99-4873 
prokMSA_id:53074 AF396080 Helicobacter cinaedi isolate 30893 
prokMSA_id:55890 AF535194 Helicobacter pylori strain Sal05 
prokMSA_id:55918 AF506781 Helicobacter heilmannii strain CM2 
prokMSA_id:56169 AF497810 Helicobacter cinaedi 
prokMSA_id:56665 AF535195 Helicobacter pylori strain Sal10 
prokMSA_id:57708 AF535198 Helicobacter pylori strain Lit81 
prokMSA_id:57709 AF535197 Helicobacter pylori strain Lit76 
prokMSA_id:57710 AF535196 Helicobacter pylori strain Lit69 
prokMSA_id:60772 AF497807 Flexispira rappini 
prokMSA_id:60773 AF497811 Helicobacter sp. J2103 
prokMSA_id:61186 AF512997 Helicobacter pylori isolate 181 complete 
prokMSA_id:64304 AF506794 Helicobacter heilmannii strain TD1 
prokMSA_id:64305 AF506792 Helicobacter heilmannii strain RM2 
prokMSA_id:64306 AF506788 Helicobacter heilmannii strain P2 
prokMSA_id:64307 AF506793 Helicobacter heilmannii strain RM1 
prokMSA_id:64310 AF506791 Helicobacter heilmannii strain P5 
prokMSA_id:64311 AF506789 Helicobacter heilmannii strain P3 
prokMSA_id:64312 AF506786 Helicobacter heilmannii strain HU2 
prokMSA_id:64314 AF506782 Helicobacter heilmannii strain MM1 
prokMSA_id:64315 AF506784 Helicobacter heilmannii strain HU1 
prokMSA_id:64316 AF506783 Helicobacter heilmannii strain MM2 
prokMSA_id:64324 AF506773 Helicobacter heilmannii strain HU4 
prokMSA_id:64325 AF506771 Helicobacter heilmannii strain HU3 
prokMSA_id:64328 AF506769 Helicobacter heilmannii strain HU5 
prokMSA_id:68374 AY062899 Helicobacter pylori strain 109 
prokMSA_id:68375 AY062898 Helicobacter pylori strain 108 
prokMSA_id:68999 AF225546 Helicobacter sp. 'Flexispira taxon 2' 
prokMSA_id:69782 AF302108 Helicobacter sp. HC15880 
prokMSA_id:70150 AF362544 Helicobacter sp. GOSH 
prokMSA_id:70187 AF054579 Helicobacter sp. UNSWMCSp1 
prokMSA_id:70293 AF054577 Helicobacter sp. UNSW1.7col 
prokMSA_id:71120 AY034818 Helicobacter rappini strain 2 SU 
prokMSA_id:71514 AJ249854 Helicobacter sp. isolate 384
prokMSA_id:71558 AF506790 Helicobacter heilmannii strain P4 
prokMSA_id:72292 AF506785 Helicobacter heilmannii strain WD1 
prokMSA_id:72724 AF506780 Helicobacter heilmannii strain CM1 
prokMSA_id:72792 AF292378 Helicobacter cetorum strain MIT 99-5656 
prokMSA_id:72874 AJ007931 Helicobacter hepaticus 
prokMSA_id:73122 AF506787 Helicobacter heilmannii strain P1 
prokMSA_id:74354 AF292377 Helicobacter sp. 'MIT 99-5657' 
prokMSA_id:74357 AY034819 Helicobacter rappini strain 3 SU 
prokMSA_id:74512 AJ249859 Helicobacter sp. isolate 11934
prokMSA_id:74909 AY155587 Helicobacter pylori strain 1205 
prokMSA_id:75781 AY155586 Helicobacter pylori strain 1200 
prokMSA_id:76377 AY143177 Helicobacter cetorum MIT 01-6202 
prokMSA_id:77094 AY143175 Helicobacter cetorum MIT 00-5903 
prokMSA_id:81166 AY203899 Helicobacter sp. MIT 01-5529B 
prokMSA_id:81282 AY203901 Helicobacter sp. MIT 01-6242 
prokMSA_id:82242 AY203898 Helicobacter sp. MIT 01-5529A 
2.28.5.1.1.42785 OTU 3 seqs
prokMSA_id:64317 AF506779 Helicobacter heilmannii strain C4S 
prokMSA_id:64319 AF506778 Helicobacter heilmannii strain C4E 
prokMSA_id:64323 AF506775 Helicobacter heilmannii strain C2S 
2.28.5.1.1.6391 OTU 1 seq
prokMSA_id:34981 AB030590 epsilon 1070 
2.28.5.1.1.8204 OTU 1 seq
prokMSA_id:37024 AF292381 Helicobacter sp. 'Solnick 9A1-T71' 
2.28.5.1.2 WLN.SUCCINOGENES_SUBGROUP 2 seqs
2.28.5.1.2.27996 OTU 2 seqs
prokMSA_id:26106 AF463534 Wolinella succinogenes 
prokMSA_id:29152 AF273252 Wolinella succinogenes 
2.28.5.2 THIOVULUM_GROUP 106 seqs
2.28.5.2.1 PELE'S_VENTS_CLONES_SUBGROUP 16 seqs
2.28.5.2.1.10128 OTU 1 seq
prokMSA_id:43869 AF367495 epsilon VC1.2-cl50 
2.28.5.2.1.10573 OTU 1 seq
prokMSA_id:82461 AY218555 clone KD1-140 
2.28.5.2.1.12196 OTU 1 seq
prokMSA_id:38197 AF367496 epsilon VC1.2-cl51 
2.28.5.2.1.17422 OTU 1 seq
prokMSA_id:48010 AF355050 epsilon Arctic96B-13 
2.28.5.2.1.20209 OTU 1 seq
prokMSA_id:11099 U15104 Pele's Vents clone PVB_12
2.28.5.2.1.21119 OTU 1 seq
prokMSA_id:70730 AF367492 epsilon VC1.2-cl32 
2.28.5.2.1.3016 OTU 1 seq
prokMSA_id:57486 AJ441198 epsilon clone P. palm C 43
2.28.5.2.1.34940 OTU 7 seqs
prokMSA_id:11093 U15102 Pele's Vents clone PVB_63
prokMSA_id:11094 U15107 Pele's Vents clone PVB_32
prokMSA_id:11095 U15105 Pele's Vents clone PVB_55
prokMSA_id:11096 U15101 Pele's Vents clone PVB_15
prokMSA_id:11101 U15103 Pele's Vents clone PVB_10
prokMSA_id:11102 U15100 Pele's Vents clone PVB_7
prokMSA_id:81592 AB088431 Sulfromonas thioautotrophicum strain:OK10
2.28.5.2.1.7441 OTU 1 seq
prokMSA_id:81472 AB088432 Sulfromonas thioautotrophicum strain:OK5
2.28.5.2.1.9348 OTU 1 seq
prokMSA_id:73836 AF367490 epsilon VC1.2-cl26 
2.28.5.2.2 TMS.DENITRIFICANS_SUBGROUP 5 seqs
2.28.5.2.2.20860 OTU 1 seq
prokMSA_id:11103 U15106 Pele's Vents clone PVB_73
2.28.5.2.2.20861 OTU 1 seq
prokMSA_id:11104 AB013263 str. NKB11
2.28.5.2.2.20862 OTU 1 seq
prokMSA_id:11108 L40808 Thiomicrospira denitrificans DSM 1251
2.28.5.2.2.20863 OTU 1 seq
prokMSA_id:11109 AF121884 clone Phenol-1
2.28.5.2.2.20880 OTU 1 seq
prokMSA_id:11113 AB015257 str. JTB146
2.28.5.2.4 ALVINELLA_POMPEJANA_SYMBIONTS_SUBGROUP 85 seqs
2.28.5.2.4.13024 OTU 1 seq
prokMSA_id:67789 AF420348 isolate a2b009 
2.28.5.2.4.13022 OTU 1 seq
prokMSA_id:67787 AF420351 isolate CS_B015 
2.28.5.2.4.13046 OTU 1 seq
prokMSA_id:67794 AF420343 isolate a1b024 
2.28.5.2.4.15195 OTU 1 seq
prokMSA_id:76523 AJ535664 Caminibacter sp. CR strain CR
2.28.5.2.4.16227 OTU 1 seq
prokMSA_id:47236 AJ404370 epsilon 525 
2.28.5.2.4.1643 OTU 1 seq
prokMSA_id:79565 AJ431218 Dex60-82 strain Dex60-82
2.28.5.2.4.1721 OTU 1 seq
prokMSA_id:79591 AB099998 sequences clone: IndB1-30
2.28.5.2.4.17588 OTU 1 seq
prokMSA_id:61855 AF449253 epsilon clone R76-B151 
2.28.5.2.4.17590 OTU 1 seq
prokMSA_id:61857 AF449252 epsilon clone R76-B129 
2.28.5.2.4.17593 OTU 1 seq
prokMSA_id:61858 AF449251 epsilon clone R76-B78 
2.28.5.2.4.17631 OTU 1 seq
prokMSA_id:61869 AF449240 epsilon clone R103-B76 
2.28.5.2.4.17626 OTU 1 seq
prokMSA_id:61866 AF449243 epsilon clone R76-B30 
2.28.5.2.4.17623 OTU 1 seq
prokMSA_id:61863 AF449246 epsilon clone R76-B51 
2.28.5.2.4.17663 OTU 1 seq
prokMSA_id:61876 AF449233 epsilon clone R103-B19 
2.28.5.2.4.17665 OTU 1 seq
prokMSA_id:61878 AF449231 epsilon clone R103-B15 
2.28.5.2.4.18173 OTU 1 seq
prokMSA_id:70391 AF367493 epsilon VC1.2-cl42 
2.28.5.2.4.18472 OTU 1 seq
prokMSA_id:77641 AB089112 epsilon clone:Rs-P71
2.28.5.2.4.18952 OTU 1 seq
prokMSA_id:55437 AJ441208 epsilon clone P. palm C/A 55
2.28.5.2.4.19099 OTU 1 seq
prokMSA_id:54845 AF299126 S17sBac21 complete 
2.28.5.2.4.19249 OTU 1 seq
prokMSA_id:77777 AJ535216 epsilon clone Hyd01-01
2.28.5.2.4.19272 OTU 1 seq
prokMSA_id:16957 AF357196 Epsilon 18.2 
2.28.5.2.4.2062 OTU 1 seq
prokMSA_id:34431 AF367484 epsilon VC1.2-cl06 
2.28.5.2.4.20903 OTU 1 seq
prokMSA_id:11121 L35520 symbiont of Alvinella pompejana
2.28.5.2.4.20904 OTU 1 seq
prokMSA_id:11124 L35521 symbiont of Alvinella pompejana
2.28.5.2.4.20905 OTU 1 seq
prokMSA_id:11127 U29081 symbiont of Rimicaris exoculata
2.28.5.2.4.20906 OTU 1 seq
prokMSA_id:11129 AF068783 VC2.1 Bac1 complete 
2.28.5.2.4.20902 OTU 1 seq
prokMSA_id:11120 L35523 symbiont of Alvinella pompejana
2.28.5.2.4.20957 OTU 1 seq
prokMSA_id:11147 AB013262 str. NKB10
2.28.5.2.4.20951 OTU 1 seq
prokMSA_id:11142 AB015535 str. BD2-5
2.28.5.2.4.20952 OTU 1 seq
prokMSA_id:11143 AB015582 str. BD7-6
2.28.5.2.4.20926 OTU 1 seq
prokMSA_id:11130 AF068786 VC2.1 Bac4 complete 
2.28.5.2.4.20928 OTU 1 seq
prokMSA_id:11136 AF068805 VC2.1 Bac31 complete 
2.28.5.2.4.20973 OTU 1 seq
prokMSA_id:11150 L35522 symbiont of Alvinella pompejana
2.28.5.2.4.21307 OTU 1 seq
prokMSA_id:79240 AJ431221 BHI60-14 strain BHI60-14
2.28.5.2.4.21433 OTU 1 seq
prokMSA_id:25670 AJ307941 mRNA clone sipK94
2.28.5.2.4.21596 OTU 1 seq
prokMSA_id:47967 AF299130 S17sBac5 complete 
2.28.5.2.4.2341 OTU 1 seq
prokMSA_id:79600 AJ431216 BHI80-49 strain BHI80-49
2.28.5.2.4.2555 OTU 1 seq
prokMSA_id:20059 AJ132737 Top-147 clone Top-147
2.28.5.2.4.29348 OTU 2 seqs
prokMSA_id:35810 AF299124 S17sBac14 complete 
prokMSA_id:36523 AF299129 S17sBac4 complete 
2.28.5.2.4.2985 OTU 1 seq
prokMSA_id:57467 AJ441211 epsilon clone P. palm C/A 89
2.28.5.2.4.2989 OTU 1 seq
prokMSA_id:57469 AJ441209 epsilon clone P. palm C/A 64
2.28.5.2.4.2998 OTU 1 seq
prokMSA_id:57471 AJ441206 epsilon clone P. palm C/A 113
2.28.5.2.4.3000 OTU 1 seq
prokMSA_id:57473 AJ441204 epsilon clone P. palm C 84
2.28.5.2.4.2999 OTU 1 seq
prokMSA_id:57472 AJ441205 epsilon clone P. palm C/A 114
2.28.5.2.4.3001 OTU 1 seq
prokMSA_id:57474 AJ441203 epsilon clone P. palm C/A 13
2.28.5.2.4.3002 OTU 1 seq
prokMSA_id:57475 AJ441202 epsilon clone P. palm C 140
2.28.5.2.4.30484 OTU 2 seqs
prokMSA_id:11137 AF154091 clone BPC056
prokMSA_id:11138 AF154101 clone GCA014
2.28.5.2.4.30495 OTU 4 seqs
prokMSA_id:11140 AB015517 str. BD1-4
prokMSA_id:11141 AB015531 str. BD2-1
prokMSA_id:11145 AB013260 str. NKB8
prokMSA_id:11148 AB013264 str. NKB12
2.28.5.2.4.32864 OTU 3 seqs
prokMSA_id:17403 AF299127 S17sBac3 complete 
prokMSA_id:40818 AF299128 S17sBac34 complete 
prokMSA_id:42752 AF299131 S17sBac8 complete 
2.28.5.2.4.33321 OTU 6 seqs
prokMSA_id:11151 AF068789 VC2.1 Bac8 complete 
prokMSA_id:11152 AF068795 VC2.1 Bac17 complete 
prokMSA_id:11153 AF068796 VC2.1 Bac19 complete 
prokMSA_id:11154 AF068797 VC2.1 Bac20 complete 
prokMSA_id:11155 AF068804 VC2.1 Bac30 complete 
prokMSA_id:11156 AF068812 VC2.1 Bac12 complete 
2.28.5.2.4.33951 OTU 2 seqs
prokMSA_id:57468 AJ441210 epsilon clone P. palm C/A 220
prokMSA_id:61872 AF449237 epsilon clone R103-B43 
2.28.5.2.4.34494 OTU 2 seqs
prokMSA_id:67782 AF420359 isolate C1_B006 
prokMSA_id:67793 AF420344 isolate a1b001 
2.28.5.2.4.42237 OTU 2 seqs
prokMSA_id:67792 AF420345 isolate a2b004 
prokMSA_id:79175 AJ431222 BHI80-16 strain BHI80-16
2.28.5.2.4.42878 OTU 2 seqs
prokMSA_id:61860 AF449249 epsilon clone R76-B67 
prokMSA_id:61865 AF449245 epsilon clone R76-B47 
2.28.5.2.4.42879 OTU 2 seqs
prokMSA_id:61861 AF449248 epsilon clone R76-B61 
prokMSA_id:61874 AF449236 epsilon clone R103-B37 
2.28.5.2.4.42880 OTU 6 seqs
prokMSA_id:61859 AF449250 epsilon clone R76-B76 
prokMSA_id:61862 AF449247 epsilon clone R76-B57 
prokMSA_id:61864 AF449244 epsilon clone R76-B25 
prokMSA_id:61868 AF449242 epsilon clone R76-B29 
prokMSA_id:61871 AF449238 epsilon clone R103-B46 
prokMSA_id:73787 AF420362 isolate C1_B011 
2.28.5.2.4.42889 OTU 2 seqs
prokMSA_id:11146 AB013261 str. NKB9
prokMSA_id:11149 AB015258 str. JTB315
2.28.5.2.4.4594 OTU 1 seq
prokMSA_id:27536 AF367486 epsilon VC1.2-cl10 
2.28.5.2.4.591 OTU 1 seq
prokMSA_id:40838 AF299123 S17sBac25 complete 
2.28.5.2.4.61 OTU 1 seq
prokMSA_id:79345 AJ431213 BHI60-53 strain BHI60-53
2.28.5.2.4.6640 OTU 1 seq
prokMSA_id:51291 AF357197 Epsilon Am-H 
2.28.5.2.4.745 OTU 1 seq
prokMSA_id:79406 AJ431214 BHI80-5 strain BHI80-5
2.28.5.3 CAMPYLOBACTER_GROUP 171 seqs
2.28.5.3.1 AOB.CRYAEROPHILUS_SUBGROUP 37 seqs
2.28.5.3.1.12195 OTU 1 seq
prokMSA_id:51975 AJ271654 Arcobacter sp. clone D1a1
2.28.5.3.1.14511 OTU 1 seq
prokMSA_id:30662 AB030597 epsilon 1003 
2.28.5.3.1.17657 OTU 1 seq
prokMSA_id:61870 AF449239 epsilon clone R103-B70 
2.28.5.3.1.18682 OTU 1 seq
prokMSA_id:71048 AF235110 Arcobacter sp. KT0913 
2.28.5.3.1.21003 OTU 1 seq
prokMSA_id:11163 AB013832 str. 45.e
2.28.5.3.1.21052 OTU 1 seq
prokMSA_id:11181 AB013833 str. 77.d
2.28.5.3.1.21032 OTU 1 seq
prokMSA_id:11175 D83060 unnamed organism
2.28.5.3.1.21051 OTU 1 seq
prokMSA_id:11180 AB015529 str. BD1-29
2.28.5.3.1.21940 OTU 1 seq
prokMSA_id:79301 AB100003 sequences clone: IndB2-33
2.28.5.3.1.27065 OTU 2 seqs
prokMSA_id:11162 L42994 Arcobacter sp. str. Solar Lake
prokMSA_id:70443 L42994 Arcobacter sp
2.28.5.3.1.28060 OTU 2 seqs
prokMSA_id:11158 L14626 Arcobacter butzleri CCUG 10373
prokMSA_id:36386 AF314538 Arcobacter butzleri 
2.28.5.3.1.29304 OTU 5 seqs
prokMSA_id:11165 L14624 Arcobacter cryaerophilus CCUG 17801
prokMSA_id:11166 Z93951 clone T31
prokMSA_id:11169 Z93999 clone T24
prokMSA_id:11171 Z94001 clone T55
prokMSA_id:11172 Z94002 clone T31
2.28.5.3.1.29898 OTU 2 seqs
prokMSA_id:24487 AB030593 epsilon 1053 
prokMSA_id:35924 AB030592 epsilon 1006 
2.28.5.3.1.3047 OTU 1 seq
prokMSA_id:49628 AF235116 epsilon KTc1160 
2.28.5.3.1.31396 OTU 2 seqs
prokMSA_id:20475 AJ271655 Arcobacter sp. clone A3b2
prokMSA_id:45228 AJ271653 Arcobacter sp. clone B4b1
2.28.5.3.1.33252 OTU 8 seqs
prokMSA_id:20461 AJ132728 CHA3-437 clone CHA3-437
prokMSA_id:27126 AJ132724 CHA3-124 clone CHA3-124
prokMSA_id:33261 AJ132731 CHA3-102 clone CHA3-102
prokMSA_id:42967 AJ132723 CHA3-101 clone CHA3-101
prokMSA_id:48263 AJ132732 CHA3-30 clone CHA3-30
prokMSA_id:49402 AJ132730 CHA3-4 clone CHA3-4
prokMSA_id:72967 AJ132725 CHA3-217 clone CHA3-217
prokMSA_id:74747 AJ132729 CHA3-215 clone CHA3-215
2.28.5.3.1.33413 OTU 2 seqs
prokMSA_id:11182 AB015256 str. JTB129
prokMSA_id:11183 AB015259 str. JTB360
2.28.5.3.1.42187 OTU 2 seqs
prokMSA_id:17190 AB030598 epsilon 1065 
prokMSA_id:48373 AB030599 epsilon 1057 
2.28.5.3.1.669 OTU 1 seq
prokMSA_id:70950 AY035822 Candidatus Arcobacter sulfidicus 
2.28.5.3.1.9597 OTU 1 seq
prokMSA_id:22128 AF144693 Oilfield 'FWKO B' 
2.28.5.3.2 SFS.BARNESII_SUBGROUP 40 seqs
2.28.5.3.2.11880 OTU 1 seq
prokMSA_id:30295 AF407391 clone RA9C8 
2.28.5.3.2.13048 OTU 1 seq
prokMSA_id:67795 AF420342 isolate a1b010 
2.28.5.3.2.15675 OTU 1 seq
prokMSA_id:24279 AJ249226 DCE10 
2.28.5.3.2.17378 OTU 1 seq
prokMSA_id:62416 AF529098 epsilon clone FTL212 
2.28.5.3.2.17526 OTU 1 seq
prokMSA_id:62490 AF513952 Sulfurospirillum sp. clone LA4-B52N 
2.28.5.3.2.20758 OTU 1 seq
prokMSA_id:77916 AB089114 candidate division OP11 clone:Rs-M28
2.28.5.3.2.21060 OTU 1 seq
prokMSA_id:11188 AB015518 str. BD1-5
2.28.5.3.2.21070 OTU 1 seq
prokMSA_id:11190 AF038843 Sulfurospirillum barnesii str. SES-3
2.28.5.3.2.21076 OTU 1 seq
prokMSA_id:11193 Y11561 Sulfurospirillum arcachonense str. F1F6 DSMZ 9755
2.28.5.3.2.21074 OTU 1 seq
prokMSA_id:11192 AF144694 Campylobacter sp. DSM806 
2.28.5.3.2.2568 OTU 1 seq
prokMSA_id:79697 AY189928 Sulfurospirillum sp. JPD-1 
2.28.5.3.2.27372 OTU 4 seqs
prokMSA_id:17620 AF367482 epsilon VC1.2-cl02 
prokMSA_id:23025 AF367488 epsilon VC1.2-cl18 
prokMSA_id:37981 AF367483 epsilon VC1.2-cl04 
prokMSA_id:42904 AF367487 epsilon VC1.2-cl13 
2.28.5.3.2.33093 OTU 4 seqs
prokMSA_id:28947 AB030589 epsilon 1058 
prokMSA_id:44032 AB030588 epsilon 1018 
prokMSA_id:66170 AJ488095 clone IIIA-8
prokMSA_id:66178 AJ488086 clone IIB-25
2.28.5.3.2.35241 OTU 2 seqs
prokMSA_id:19883 AF357198 Sulfurospirillum sp. Am-N 
prokMSA_id:22148 AF357199 Sulfurospirillum sp. 18.1 
2.28.5.3.2.37874 OTU 9 seqs
prokMSA_id:21738 AB030601 epsilon 1043 
prokMSA_id:22082 AB030605 epsilon 1028 
prokMSA_id:27290 AJ307940 mRNA clone sipK119
prokMSA_id:27914 AB030602 epsilon 1054 
prokMSA_id:34308 AB030600 epsilon 1005 
prokMSA_id:34916 AB030608 epsilon 1033 
prokMSA_id:37769 AB030606 epsilon 1049 
prokMSA_id:48041 AB030603 epsilon 1047 
prokMSA_id:49390 AB080644 Sulfuricurvum kujiense strain:YK-3
2.28.5.3.2.42207 OTU 5 seqs
prokMSA_id:11186 K. X82931 Dehalospirillum multivorans str
prokMSA_id:11189 U85964 Sulfurospirillum arsenophilum str. MIT-13 ATCC 700056
prokMSA_id:16474 AF246664 Enrichment culture JMP-9 
prokMSA_id:25462 AF218076 Sulfurospirillum halorespirans strain PCE-M2 
prokMSA_id:40099 AB030587 epsilon 1014 
2.28.5.3.2.4998 OTU 1 seq
prokMSA_id:73328 AF367491 epsilon VC1.2-cl31 
2.28.5.3.2.5300 OTU 1 seq
prokMSA_id:66190 AJ488073 clone IA-22
2.28.5.3.2.7223 OTU 1 seq
prokMSA_id:82067 AY218582 clone KD2-34 
2.28.5.3.2.7620 OTU 1 seq
prokMSA_id:59205 AY135396 Campylobacter sp. NO3A 
2.28.5.3.2.7654 OTU 1 seq
prokMSA_id:59210 AY135395 Campylobacter sp. NO2B 
2.28.5.3.4 CAM.FETUS_SUBGROUP 94 seqs
2.28.5.3.4.18914 OTU 1 seq
prokMSA_id:32546 AY005038 Campylobacter sp. oral clone BB120 
2.28.5.3.4.19359 OTU 1 seq
prokMSA_id:69947 AJ276874 Campylobacter faecalis strain 1433
2.28.5.3.4.21635 OTU 1 seq
prokMSA_id:11227 X67775 Campylobacter sputorum subsp. sputorum str. S17 ATCC 35980
2.28.5.3.4.2232 OTU 1 seq
prokMSA_id:57360 AF550648 Campylobacter helveticus strain CCUG 34016 
2.28.5.3.4.2244 OTU 1 seq
prokMSA_id:57366 AF550641 Campylobacter upsaliensis strain LMG 8853 
2.28.5.3.4.2305 OTU 1 seq
prokMSA_id:57382 AF550622 Campylobacter coli strain LMG 15884 
2.28.5.3.4.28375 OTU 4 seqs
prokMSA_id:11209 L37787 Campylobacter gracilis str. WAL 6989 ATCC 33236
prokMSA_id:56165 AF550656 Campylobacter gracilis strain LMG 7616 
prokMSA_id:57351 AF550657 Campylobacter gracilis strain CCUG 13143 
prokMSA_id:57352 AF550658 Campylobacter gracilis strain CCUG 27721 
2.28.5.3.4.30567 OTU 3 seqs
prokMSA_id:11210 AF062490 Campylobacter hominis str. HS-A
prokMSA_id:11211 AF062491 Campylobacter hominis str. HS-B
prokMSA_id:11212 AF062492 Campylobacter hominis str. HS-C
2.28.5.3.4.33964 OTU 3 seqs
prokMSA_id:57359 AF550649 Campylobacter helveticus strain CCUG 34016 
prokMSA_id:57361 AF550647 Campylobacter helveticus strain CCUG 30563 
prokMSA_id:57363 AF550646 Campylobacter helveticus strain LMG 12639 
2.28.5.3.4.35211 OTU 7 seqs
prokMSA_id:11200 AF097681 Campylobacter hyointestinalis subsp. hyointestinalis str. 04
prokMSA_id:11201 AF097682 Campylobacter hyointestinalis subsp. hyointestinalis str. 09
prokMSA_id:11202 AF097689 Campylobacter hyointestinalis subsp. hyointestinalis NCTC 11
prokMSA_id:11203 AF097690 Campylobacter hyointestinalis subsp. hyointestinalis str. SV
prokMSA_id:64355 AF499005 Campylobacter hyointestinalis strain H00/108 
prokMSA_id:69901 AF219233 Campylobacter fetus MGH 97-2126 
prokMSA_id:70687 AF219235 Campylobacter hyointestinalis 
2.28.5.3.4.40832 OTU 5 seqs
prokMSA_id:56461 AB076675 Campylobacter lanienae 
prokMSA_id:57346 AF550664 Campylobacter lanienae strain S-K FAVW 
prokMSA_id:64363 AB076676 Campylobacter lanienae 
prokMSA_id:64364 AB076677 Campylobacter lanienae 
prokMSA_id:75078 AY165045 Campylobacter lanienae isolate G718b 
2.28.5.3.4.41735 OTU 6 seqs
prokMSA_id:20808 AJ306568 Campylobacter fetus subsp. fetus isolate 002\827
prokMSA_id:52782 AJ306569 Campylobacter fetus subsp. fetus isolate 102\804
prokMSA_id:57387 AF550619 Campylobacter fetus subsp. fetus strain H00/415 
prokMSA_id:57388 AF550618 Campylobacter fetus subsp. fetus strain F-107/4132 
prokMSA_id:68798 AF482990 Campylobacter fetus subsp. venerealis complete 
prokMSA_id:71368 AF219234 Campylobacter fetus MGH 97-3574 
2.28.5.3.4.42250 OTU 6 seqs
prokMSA_id:56203 AF550663 Campylobacter mucosalis strain ATCC 43265 
prokMSA_id:57347 AF550661 Campylobacter mucosalis strain ATCC 49353 
prokMSA_id:57348 AF550662 Campylobacter mucosalis strain ATCC 49354 
prokMSA_id:57349 AF550660 Campylobacter mucosalis strain ATCC 49352 
prokMSA_id:57355 AF550654 Campylobacter concisus strain LMG 13937 
prokMSA_id:57356 AF550653 Campylobacter concisus strain LMG 7545 
2.28.5.3.4.42313 OTU 21 seqs
prokMSA_id:11214 Z29326 Campylobacter jejuni subsp. jejuni str. TGH 9011 ATCC 43431
prokMSA_id:11219 Y11763 Campylobacter sp. NCTC 13006
prokMSA_id:11244 L04316 Campylobacter lari str. VC187; WRI 3034/77 CCUG 23947
prokMSA_id:11258 Y19244 Campylobacter jejuni subsp. doylei str. SSI 5384-98
prokMSA_id:49562 NC_002163 Campylobacter jejuni complete genome
prokMSA_id:54599 AB066098 Campylobacter lari genes ITS region and 23S and complete str
prokMSA_id:57373 AF550634 Campylobacter lari strain LMG 14338 
prokMSA_id:57374 AF550630 Campylobacter jejuni strain B99/206 
prokMSA_id:57375 AF550631 Campylobacter lari strain LMG 7607 
prokMSA_id:57376 AF550629 Campylobacter jejuni strain B99/224 
prokMSA_id:57377 AF550627 Campylobacter jejuni strain LMG 9243 
prokMSA_id:57378 AF550626 Campylobacter jejuni strain LMG 9217 
prokMSA_id:57379 AF550625 Campylobacter coli strain B99/131 
prokMSA_id:57381 AF550623 Campylobacter coli strain H99/119 
prokMSA_id:57383 AF550621 Campylobacter coli strain LMG 15883 
prokMSA_id:63933 AL139075 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genom
prokMSA_id:66982 AF393203 Campylobacter jejuni strain 98/E599/10 
prokMSA_id:66983 AF393202 Campylobacter jejuni strain 98/E600/5 
prokMSA_id:66984 AF393204 Campylobacter jejuni strain WH11 
prokMSA_id:66989 AF372091 Campylobacter jejuni strain NCTC 11351 
prokMSA_id:74490 AF550633 Campylobacter lari strain LMG 11760 
2.28.5.3.4.42541 OTU 10 seqs
prokMSA_id:11204 AF043423 Campylobacter lanienae str. UB 993
prokMSA_id:11205 AF043425 Campylobacter lanienae NCTC 13004
prokMSA_id:11234 AF097685 Campylobacter hyointestinalis subsp. lawsonii str. CHY5
prokMSA_id:11235 AF097686 Campylobacter hyointestinalis subsp. lawsonii str. CHY6
prokMSA_id:11236 AF097687 Campylobacter hyointestinalis subsp. lawsonii str. CHY7
prokMSA_id:11237 AF097688 Campylobacter hyointestinalis subsp. lawsonii str. CHY8
prokMSA_id:11238 AF097691 Campylobacter hyointestinalis subsp. hyointestinalis str. SV
prokMSA_id:11239 AF043422 Campylobacter cf. lanienae UB 992 str. UB 992
prokMSA_id:11240 AF043424 Campylobacter cf. lanienae UB 994 str. UB 994
prokMSA_id:53197 AF097684 Campylobacter hyointestinalis subsp. lawsonii strain CHY4 an
2.28.5.3.4.42620 OTU 5 seqs
prokMSA_id:56624 AF550636 Campylobacter sputorum strain LMG 11761 
prokMSA_id:57369 AF550638 Campylobacter sputorum strain CSP-1 
prokMSA_id:57370 AF550637 Campylobacter sputorum strain LMG 6617 
prokMSA_id:57371 AF550635 Campylobacter sputorum strain LMG 10388 
prokMSA_id:57372 AF550639 Campylobacter sputorum strain CSP-2 
2.28.5.3.4.42705 OTU 3 seqs
prokMSA_id:57354 AF550652 Campylobacter curvus strain LMG 13936 
prokMSA_id:57357 AF550651 Campylobacter curvus strain LMG 11127 
prokMSA_id:57358 AF550650 Campylobacter curvus strain LMG 11034 
2.28.5.3.4.42702 OTU 2 seqs
prokMSA_id:57350 AF550659 Campylobacter rectus strain LMG 7611 
prokMSA_id:57353 AF550655 Campylobacter showae strain LMG 12636 
2.28.5.3.4.42746 OTU 8 seqs
prokMSA_id:55374 AF497806 Campylobacter upsaliensis strain G1104 
prokMSA_id:57362 AF550645 Campylobacter upsaliensis strain L 461 
prokMSA_id:57364 AF550644 Campylobacter upsaliensis strain H53 E/ccda 
prokMSA_id:57365 AF550642 Campylobacter upsaliensis strain H29 
prokMSA_id:57367 AF550643 Campylobacter upsaliensis strain H37 E/1 
prokMSA_id:57368 AF550640 Campylobacter upsaliensis strain LMG 8851 
prokMSA_id:60770 AF497805 Campylobacter upsaliensis strain LMG 8850 
prokMSA_id:70846 AF393205 Campylobacter upsaliensis strain WH6 
2.28.5.3.4.42888 OTU 2 seqs
prokMSA_id:67838 AY082468 epsilon clone 44a-B1-40 
prokMSA_id:67848 AY082456 epsilon clone 44a-B1-1 
2.28.5.3.4.5353 OTU 1 seq
prokMSA_id:28244 AB030591 epsilon 1068 
2.28.5.3.4.9659 OTU 1 seq
prokMSA_id:82339 AY216452 clone KM61 
2.28.5.3.4.98 OTU 1 seq
prokMSA_id:55836 AF550628 Campylobacter jejuni strain H99/240 
2.28.5.4 ENVIRONMENTAL_CLONE_A21N_GROUP 1 seq
2.28.5.4.2008 OTU 1 seq
prokMSA_id:34401 AF407201 clone GIF10 
2.28.5.99 VARIOUS 2 seqs
2.28.5.99.42817 OTU 2 seqs
prokMSA_id:78064 AB089111 epsilon clone:Rs-M59
prokMSA_id:78387 AB089113 epsilon clone:Rs-H40
2.28.6 UNCULTURED_MAGNETOTACTIC_CLONES 16 seqs
2.28.6.21703 OTU 1 seq
prokMSA_id:11266 Y13208 str. rj53
2.28.6.21699 OTU 1 seq
prokMSA_id:11265 X81183 clone TB12
2.28.6.21704 OTU 1 seq
prokMSA_id:11268 Y13213 str. pa19
2.28.6.21714 OTU 1 seq
prokMSA_id:11270 X81182 clone CS93
2.28.6.21722 OTU 1 seq
prokMSA_id:11274 X81185 clone TB24
2.28.6.21717 OTU 1 seq
prokMSA_id:11272 Y13214 str. pa119
2.28.6.21727 OTU 1 seq
prokMSA_id:11278 AB015540 str. BD2-11
2.28.6.21754 OTU 1 seq
prokMSA_id:11286 U15116 Pele's Vents clone PVB_13
2.28.6.21756 OTU 1 seq
prokMSA_id:11287 X80996 clone MP17
2.28.6.30677 OTU 2 seqs
prokMSA_id:11280 Y13209 str. rj516
prokMSA_id:11283 Y13215 str. rj12
2.28.6.30665 OTU 3 seqs
prokMSA_id:11279 Y13207 str. rj520
prokMSA_id:11281 Y13210 str. rj517
prokMSA_id:11282 Y13211 str. rj58
2.28.6.9023 OTU 1 seq
prokMSA_id:81623 AY218696 clone KD8-87 
2.28.6.921 OTU 1 seq
prokMSA_id:18643 AJ309526 Red Sea KT-2K34 
2.28.99 VARIOUS 6 seqs
2.28.99.32835 OTU 3 seqs
prokMSA_id:45257 AF391978 thermal soil clone YNPFFP57 
prokMSA_id:45882 AF391979 thermal soil clone YNPFFP3 
prokMSA_id:52546 AF391977 thermal soil clone YNPFFP50 
2.28.99.34964 OTU 3 seqs
prokMSA_id:55923 AF432607 clone NOS7.157WL 
prokMSA_id:72899 AF545649 candidate division BD clone BDfull1 
prokMSA_id:82212 AY218695 clone KD8-84 
2.29 FUSOBACTERIA_AND_RELATIVES 68 seqs
2.29.1 LPT.BUCCALIS_SUBGROUP 27 seqs
2.29.1.10293 OTU 1 seq
prokMSA_id:59574 AY134896 Leptotrichia sp. oral clone EX103 
2.29.1.11043 OTU 1 seq
prokMSA_id:29566 AY078425 Cf. Leptotrichia sp. AMN-1 
2.29.1.11412 OTU 1 seq
prokMSA_id:38061 AF287814 Leptotrichia sp. oral clone F138 
2.29.1.1372 OTU 1 seq
prokMSA_id:71688 AF201978 Human oral AC60 
2.29.1.14399 OTU 1 seq
prokMSA_id:31235 AF432138 Leptotrichia sp. oral clone FP036 
2.29.1.16056 OTU 1 seq
prokMSA_id:70038 AF385571 Leptotrichia sp. oral clone EI013 
2.29.1.16670 OTU 1 seq
prokMSA_id:32203 AY008309 Leptotrichia sp. oral clone BU064 
2.29.1.21774 OTU 1 seq
prokMSA_id:11291 M58678 Sebaldella termitidis ATCC 33386
2.29.1.21785 OTU 1 seq
prokMSA_id:11299 X83517 str. AVG 2115
2.29.1.26289 OTU 3 seqs
prokMSA_id:51437 AF287816 Leptotrichia sp. oral isolate A39FD 
prokMSA_id:70804 AY029802 Leptotrichia sp. LB16 
prokMSA_id:74297 AY029804 Leptotrichia sp. LB32 
2.29.1.27711 OTU 2 seqs
prokMSA_id:37488 AF287813 Leptotrichia sp. oral strain FAC5 
prokMSA_id:70629 AY029803 Leptotrichia sp. LB23 
2.29.1.2899 OTU 1 seq
prokMSA_id:71850 AY029807 Leptotrichia sp. LB57 
2.29.1.30203 OTU 2 seqs
prokMSA_id:11297 AF189244 Leptotrichia sp
prokMSA_id:49525 AF287811 Leptotrichia sp. oral clone DA069 
2.29.1.30695 OTU 2 seqs
prokMSA_id:11292 Z35304 Streptobacillus moniliformis str. ANL 370-1
prokMSA_id:11293 Z35305 Streptobacillus moniliformis ATCC 14647
2.29.1.30713 OTU 2 seqs
prokMSA_id:71467 AY029801 Leptotrichia sp. LB11 
prokMSA_id:71923 AY029805 Leptotrichia sp. LB06 
2.29.1.30732 OTU 2 seqs
prokMSA_id:73096 AF366268 Leptotrichia sp. clone DE081 
prokMSA_id:74059 AY029806 Leptotrichia sp. LB37 
2.29.1.7058 OTU 1 seq
prokMSA_id:58542 AJ344093 Sneathia sanguinegens strain CCUG 41628T
2.29.1.8264 OTU 1 seq
prokMSA_id:20731 AJ289183 E1-K6 
2.29.1.8457 OTU 1 seq
prokMSA_id:74391 AF385518 Leptotrichia sp. oral clone DR011 
2.29.1.9461 OTU 1 seq
prokMSA_id:73887 AF385572 Leptotrichia sp. oral clone EI022 
2.29.2 PRG.MODESTUM_SUBGROUP 9 seqs
2.29.2.14194 OTU 1 seq
prokMSA_id:52873 T AJ307980 Ilyobacter insuetus DSM 6831
2.29.2.30813 OTU 3 seqs
prokMSA_id:11300 X84049 Propionigenium maris str. 10succ1 DSM 9537
prokMSA_id:34513 Y16800 Propionigenium maris strain ML-1
prokMSA_id:42042 Y16799 Propionigenium maris strain DSL-1
2.29.2.31856 OTU 2 seqs
prokMSA_id:57456 AJ441229 Fusobacteria clone P. palm C/A 63
prokMSA_id:76867 AF550592 Fusobacteria Ko711 
2.29.2.34374 OTU 2 seqs
prokMSA_id:31785 T AJ307981 Ilyobacter polytropus DSM 2926
prokMSA_id:41139 T AJ307982 Ilyobacter tartaricus DSM 2382
2.29.2.349 OTU 1 seq
prokMSA_id:11301 X54275 Propionigenium modestum
2.29.3 CETOBACTERIUM.CETI 1 seq
2.29.3.350 OTU 1 seq
prokMSA_id:11302 X78419 Cetobacterium ceti str. M-3333 NCFB 3026
2.29.5 FUSOBACTERIA_GROUP 31 seqs
2.29.5.2964 OTU 1 seq
prokMSA_id:57457 AJ441228 green non-sulfur clone P. palm C/A 25
2.29.5.31820 OTU 4 seqs
prokMSA_id:11305 X74407 Fusobacterium necrophorum str. FnS-1; biotype AB
prokMSA_id:11309 B. X74408 Fusobacterium necrophorum str. FnS40; biotype
prokMSA_id:11310 AF044948 Fusobacterium necrophorum str. D4
prokMSA_id:34266 AJ295750 Fusobacterium equorum strain horse
2.29.5.34825 OTU 25 seqs
prokMSA_id:11316 AJ006964 Fusobacterium nucleatum subsp. vincentii ATCC 49256
prokMSA_id:11317 AJ006965 Fusobacterium naviforme str. DMS 20699 NCTC 11464
prokMSA_id:20351 AF287810 Fusobacterium sp. oral clone CZ006 
prokMSA_id:30752 AF287805 Fusobacterium sp. oral clone AJ050 
prokMSA_id:34568 AJ133496 Fusobacterium nucleatum subsp. nucleatum 
prokMSA_id:40432 AF287815 Fusobacterium sp. oral clone I035 
prokMSA_id:41933 AF385575 Fusobacterium sp. oral clone EU021 
prokMSA_id:46013 AF366265 Fusobacterium sp. clone BS019 
prokMSA_id:52269 AF287809 Fusobacterium sp. oral clone CY024 
prokMSA_id:58280 AF543300 Fusobacterium nucleatum 
prokMSA_id:59567 AY134900 Fusobacterium sp. oral clone EX162 
prokMSA_id:59571 AY134897 Fusobacterium sp. oral clone EX123 
prokMSA_id:64396 NC_003454 Fusobacterium nucleatum subsp. nucleatum ATCC 25586 complete
prokMSA_id:68347 AF481217 Fusobacterium nucleatum E9_12 subphylotype-E1 oral isolate 
prokMSA_id:70705 AJ289181 E1-K5 
prokMSA_id:72547 AF432130 Fusobacterium sp. oral clone BS011 
prokMSA_id:72688 AJ289177 E1-K4 
prokMSA_id:73310 AF287806 Fusobacterium sp. oral clone R002 
prokMSA_id:77649 AY162222 Fusobacterium nucleatum subsp. canifelium strain RMA 11693 
prokMSA_id:77942 AY162221 Fusobacterium nucleatum subsp. canifelium strain RMA 1036 
prokMSA_id:78038 AY162219 Fusobacterium nucleatum subsp. canifelium strain RMA 12701 
prokMSA_id:78238 AY162220 Fusobacterium nucleatum subsp. canifelium strain RMA 12708 
prokMSA_id:79662 AABF010000 Fusobacterium nucleatum subsp. vincentii ATCC 49256 Contig03
prokMSA_id:80083 AABF010000 Fusobacterium nucleatum subsp. vincentii ATCC 49256 Contig03
prokMSA_id:80842 AABF010001 Fusobacterium nucleatum subsp. vincentii ATCC 49256 Contig03
2.29.5.378 OTU 1 seq
prokMSA_id:11319 X77850 Clostridium rectum NCIMB 10651
2.30 GRAM_POSITIVE_BACTERIA 7203 seqs
2.30.1 HIGH_G+C_BACTERIA 2744 seqs
2.30.1.3 ENVIRONMENTAL_CLONE_MC4_GROUP 4 seqs
2.30.1.3.42823 OTU 3 seqs
prokMSA_id:66765 AJ458464 Thermoleiphilum minutum strain ATCC 35268T
prokMSA_id:66766 AJ458463 Thermoleiphilum album strain ATCC 35266T
prokMSA_id:66768 AJ458462 Thermoleiphilum album strain ATCC 35263T
2.30.1.3.9711 OTU 1 seq
prokMSA_id:52274 AF445703 clone SM1H04 
2.30.1.4 RBB.RADIOTOLERANS_GROUP 17 seqs
2.30.1.4.134 OTU 1 seq
prokMSA_id:32989 AF234151 #0319-7H2 
2.30.1.4.1398 OTU 1 seq
prokMSA_id:34399 AF391984 thermal soil clone YNPFFP1 
2.30.1.4.15212 OTU 1 seq
prokMSA_id:77189 AF432618 clone C17.11WL 
2.30.1.4.20216 OTU 1 seq
prokMSA_id:70612 AF423269 soil clone 480-2 
2.30.1.4.25190 OTU 2 seqs
prokMSA_id:50362 AJ298575 Hb7-K2 
prokMSA_id:69907 AJ298576 Hb7-K1 
2.30.1.4.26903 OTU 2 seqs
prokMSA_id:32106 AF479791 Rubrobacter taiwanensis strain LS-286 
prokMSA_id:36731 AF465803 Rubrobacter taiwanensis 
2.30.1.4.31324 OTU 4 seqs
prokMSA_id:11352 X87134 Rubrobacter radiotolerans DSM 46359
prokMSA_id:11353 U65647 Rubrobacter radiotolerans JCM 2153
prokMSA_id:11354 AJ243870 Rubrobacter radiotolerans str. RALC-4
prokMSA_id:11355 X98372 Rubrobacter radiotolerans DSM 5868
2.30.1.4.3555 OTU 1 seq
prokMSA_id:58144 AF498683 Ellin301 
2.30.1.4.42337 OTU 2 seqs
prokMSA_id:41603 AJ298579 Hb7-K4 
prokMSA_id:71641 AJ298577 Hb7-K3 
2.30.1.4.458 OTU 1 seq
prokMSA_id:11358 X92707 clone TM220
2.30.1.4.4715 OTU 1 seq
prokMSA_id:19731 AF423245 soil clone 288-2 
2.30.1.5 ATOPOBIUM_GROUP 46 seqs
2.30.1.5.2 ATP.MINUTUM_SUBGROUP 46 seqs
2.30.1.5.2.10884 OTU 1 seq
prokMSA_id:43946 Y17195 Atopobium sp. strain CCUG 38953 
2.30.1.5.2.12041 OTU 1 seq
prokMSA_id:75442 AJ534681 actinobacterium clone S15A-MN100
2.30.1.5.2.1242 OTU 1 seq
prokMSA_id:42186 AB034096 rumen 4C3d-3 
2.30.1.5.2.13268 OTU 1 seq
prokMSA_id:60552 AF426827 Olsenella sp. clone 1+7-15 
2.30.1.5.2.1374 OTU 1 seq
prokMSA_id:27160 AF371712 clone p-3423-SwA2 
2.30.1.5.2.16117 OTU 1 seq
prokMSA_id:32126 AF371713 clone p-275-o5 
2.30.1.5.2.16215 OTU 1 seq
prokMSA_id:23706 AB037385 Collinsella sp. RCA55-58 
2.30.1.5.2.18016 OTU 1 seq
prokMSA_id:76995 AJ534678 actinobacterium clone S15A-MN25
2.30.1.5.2.18234 OTU 1 seq
prokMSA_id:31818 AJ245921 Coriobacterium sp. EKSO3 strain EKSO3
2.30.1.5.2.18372 OTU 1 seq
prokMSA_id:77607 AB089070 Actinobacteridae clone:Rs-D41
2.30.1.5.2.18427 OTU 1 seq
prokMSA_id:78283 AB089077 Actinobacteridae clone:Rs-J59
2.30.1.5.2.19015 OTU 1 seq
prokMSA_id:78335 AB089074 Actinobacteridae clone:Rs-J10
2.30.1.5.2.26164 OTU 5 seqs
prokMSA_id:11370 AB011816 aerofaciens JCM 10188
prokMSA_id:17210 AJ245919 Collinsella aerofaciens strain G118
prokMSA_id:23981 AJ245920 Collinsella aerofaciens strain H818
prokMSA_id:49599 AJ131150 Coriobacterium sp. strain CCUG 33918
prokMSA_id:74735 AJ131149 Coriobacterium sp. strain CCUG 33917
2.30.1.5.2.27562 OTU 2 seqs
prokMSA_id:11380 X67148 Atopobium minutum NCFB 2751
prokMSA_id:74853 S44204 Lactobacillus minutus 1454 nt
2.30.1.5.2.30815 OTU 2 seqs
prokMSA_id:11382 S44206 Atopobium parvulum str. 1246 ATCC 33793
prokMSA_id:35187 AF292372 Atopobium parvulum 
2.30.1.5.2.32181 OTU 3 seqs
prokMSA_id:11384 X67149 Atopobium rimae str. VPI D140H-11A NCFB 2896
prokMSA_id:25658 AF287760 Atopobium sp. oral clone C019 
prokMSA_id:30853 AF292371 Atopobium rimae 
2.30.1.5.2.32172 OTU 3 seqs
prokMSA_id:11374 AF079505 Denitrobacterium detoxificans str. NPOH2
prokMSA_id:11375 AF079506 Denitrobacterium detoxificans str. NPOH3
prokMSA_id:11376 AF079507 Denitrobacterium detoxificans str. MAJ1
2.30.1.5.2.32171 OTU 2 seqs
prokMSA_id:11372 AB011817 lentum JCM 9979
prokMSA_id:16304 AF292375 Eggerthella lenta 
2.30.1.5.2.37887 OTU 9 seqs
prokMSA_id:24647 AB031062 Collinsella sp. RCA55-56 
prokMSA_id:25274 AB031061 Collinsella sp. RCA55-54 
prokMSA_id:36110 AB037382 Collinsella sp. RCA55-27 
prokMSA_id:36306 AB031059 Collinsella sp. RCA55-4 
prokMSA_id:37392 AB037384 Collinsella sp. RCA55-49 
prokMSA_id:38088 AB031060 Collinsella sp. RCA55-34 
prokMSA_id:38784 AB037383 Collinsella sp. RCA56-80 
prokMSA_id:44613 AB037381 Collinsella sp. RCA55-5 
prokMSA_id:46935 AB031063 Collinsella sp. RCA56-68 
2.30.1.5.2.478 OTU 1 seq
prokMSA_id:11364 AF101241 Slackia heliotrinireducens str. RHS 1 NCTC 11029
2.30.1.5.2.486 OTU 1 seq
prokMSA_id:11367 X79048 Coriobacterium glomerans DSM 20642
2.30.1.5.2.488 OTU 1 seq
prokMSA_id:11368 AB011814 aerofaciens JCM 7790
2.30.1.5.2.489 OTU 1 seq
prokMSA_id:11369 AB011815 aerofaciens JCM 7791
2.30.1.5.2.4916 OTU 1 seq
prokMSA_id:51091 AX003092 1 from Patent WO9935240
2.30.1.5.2.510 OTU 1 seq
prokMSA_id:11379 AB015945 JCM 9981
2.30.1.5.2.7847 OTU 1 seq
prokMSA_id:42971 AB062844 clone:BCf9-11
2.30.1.5.2.9523 OTU 1 seq
prokMSA_id:29393 AF292374 Olsenella profusa 
2.30.1.6 ACIDIMICROBIUM_GROUP 41 seqs
2.30.1.6.2 A.FERROOXIDANS_SUBGROUP 41 seqs
2.30.1.6.2.10373 OTU 1 seq
prokMSA_id:60177 AJ347031 clone TK39
2.30.1.6.2.10394 OTU 1 seq
prokMSA_id:60183 AJ347026 clone TK06
2.30.1.6.2.1138 OTU 1 seq
prokMSA_id:11400 X92696 clone TM62
2.30.1.6.2.1140 OTU 1 seq
prokMSA_id:11402 AF186411 clone UC32f
2.30.1.6.2.1168 OTU 1 seq
prokMSA_id:11419 U75647 Acidimicrobium ferrooxidans str. ICP DSM 10331
2.30.1.6.2.1183 OTU 1 seq
prokMSA_id:11421 X82546 Microthrix parvicella
2.30.1.6.2.12188 OTU 1 seq
prokMSA_id:75499 AJ519394 actinobacterium clone JG37-AG-8
2.30.1.6.2.13876 OTU 1 seq
prokMSA_id:60627 AF406548 firmicute clone AEGEAN_247 
2.30.1.6.2.13878 OTU 1 seq
prokMSA_id:60629 AF406545 firmicute clone AEGEAN_241 
2.30.1.6.2.13875 OTU 1 seq
prokMSA_id:60626 AF406552 firmicute clone AEGEAN_182 
2.30.1.6.2.14294 OTU 1 seq
prokMSA_id:75774 AJ532727 clone JG34-KF-316
2.30.1.6.2.1569 OTU 1 seq
prokMSA_id:79537 AF382135 clone ZA3612c 
2.30.1.6.2.15651 OTU 1 seq
prokMSA_id:24260 AF234754 sludge S18 
2.30.1.6.2.170 OTU 1 seq
prokMSA_id:48649 AF391981 thermal soil clone YNPFFP40 
2.30.1.6.2.18090 OTU 1 seq
prokMSA_id:63126 AY093455 clone MB-A2-100 
2.30.1.6.2.18800 OTU 1 seq
prokMSA_id:63226 AF524000 clone FW103 
2.30.1.6.2.19464 OTU 1 seq
prokMSA_id:63306 AF523912 clone RCP1-37 
2.30.1.6.2.19465 OTU 1 seq
prokMSA_id:63307 AF523913 clone RCP2-105 
2.30.1.6.2.19462 OTU 1 seq
prokMSA_id:63304 AF523915 clone RCP2-57 
2.30.1.6.2.19467 OTU 1 seq
prokMSA_id:63308 AF523909 clone RCP1-83 
2.30.1.6.2.19461 OTU 1 seq
prokMSA_id:63303 AF523916 clone RCP2-2 
2.30.1.6.2.19479 OTU 1 seq
prokMSA_id:63313 AF523906 clone RCP1-77 
2.30.1.6.2.19463 OTU 1 seq
prokMSA_id:63305 AF523914 clone RCP1-33 
2.30.1.6.2.29977 OTU 2 seqs
prokMSA_id:21407 AF418963 clone HTG6 
prokMSA_id:39516 AF418962 clone HTG5 
2.30.1.6.2.31016 OTU 2 seqs
prokMSA_id:37993 AF251436 Ferromicrobium acidophilum 
prokMSA_id:58323 AF543498 clone ASL4 
2.30.1.6.2.42084 OTU 3 seqs
prokMSA_id:11394 X92703 clone TM208
prokMSA_id:11398 X92709 clone TM232
prokMSA_id:11401 X92697 clone TM81
2.30.1.6.2.4438 OTU 1 seq
prokMSA_id:65445 AY102341 clone a13156 
2.30.1.6.2.4478 OTU 1 seq
prokMSA_id:65457 AY102328 clone a13132 
2.30.1.6.2.4509 OTU 1 seq
prokMSA_id:65467 AY102317 clone a13110 
2.30.1.6.2.5305 OTU 1 seq
prokMSA_id:58319 AY140240 Acidimicrobium sp. Y0018 
2.30.1.6.2.551 OTU 1 seq
prokMSA_id:11395 X92704 clone TM210
2.30.1.6.2.553 OTU 1 seq
prokMSA_id:11396 X92705 clone TM213
2.30.1.6.2.555 OTU 1 seq
prokMSA_id:11397 X92708 clone TM226
2.30.1.6.2.558 OTU 1 seq
prokMSA_id:11399 X92695 clone TM56
2.30.1.6.2.6938 OTU 1 seq
prokMSA_id:43490 AF225451 BA84 
2.30.1.6.2.759 OTU 1 seq
prokMSA_id:56545 AF454307 actinobacterium clone ML817J-10 
2.30.1.6.2.880 OTU 1 seq
prokMSA_id:56590 AF523911 clone RCP1-34 
2.30.1.7 FRANKIA_GROUP 79 seqs
2.30.1.7.1 GDP.OBSCURUS_ASSEMBLAGE 27 seqs
2.30.1.7.1.1188 OTU 1 seq
prokMSA_id:11426 X92710 clone TM262
2.30.1.7.1.1212 OTU 1 seq
prokMSA_id:11432 X92357 Geodermatophilus obscurus subsp. utahensis DSM 43162
2.30.1.7.1.1218 OTU 1 seq
prokMSA_id:11435 X92360 str. A7S basalt outcrop Sonora desert USA
2.30.1.7.1.1230 OTU 1 seq
prokMSA_id:11438 X92366 str. G6 white marble Athens Greece
2.30.1.7.1.1247 OTU 1 seq
prokMSA_id:11444 D85466 Cryptosporangium japonicum str. YU 636-3 IFO 15966
2.30.1.7.1.15198 OTU 1 seq
prokMSA_id:69307 AY145533 Actinomycetales GP-5 
2.30.1.7.1.2510 OTU 1 seq
prokMSA_id:49583 Y18646 Modestobacter multiseptatus 
2.30.1.7.1.28703 OTU 3 seqs
prokMSA_id:11433 X92362 str. 33S limestone Negev desert Israel
prokMSA_id:11434 X92361 str. 4S limestone Negev desert Israel
prokMSA_id:11436 X92363 str. B-SWPS rock varnish Mojave desert USA
2.30.1.7.1.33254 OTU 8 seqs
prokMSA_id:11425 L40614 Blastococcus aggregatus ATCC 25902
prokMSA_id:11427 X92364 str. G1S leachate of a landfill Vancouver Canada
prokMSA_id:18910 AJ316571 Blastococcus sp. BC448 
prokMSA_id:22938 AJ316574 Blastococcus sp. BC412 
prokMSA_id:40121 AJ430193 Blastococcus aggregatus strain DSM 4725T
prokMSA_id:43433 AJ316572 Blastococcus sp. BC517 
prokMSA_id:46074 AJ316570 Blastococcus sp. BC512 
prokMSA_id:74541 AJ316573 Blastococcus sp. BC521 
2.30.1.7.1.35361 OTU 3 seqs
prokMSA_id:11428 X92356 Geodermatophilus obscurus subsp. obscurus DSM 43160
prokMSA_id:11429 L40620 Geodermatophilus obscurus subsp. obscurus ATCC 25078
prokMSA_id:11437 X92358 str. G18 dolomite marble Namibia
2.30.1.7.1.35396 OTU 2 seqs
prokMSA_id:11439 L40621 Geodermatophilus obscurus subsp. dictyosporus str. G97
prokMSA_id:11440 X92355 Geodermatophilus obscurus subsp. dictyosporus DSM 43161
2.30.1.7.1.3751 OTU 1 seq
prokMSA_id:71987 AY145534 Actinobacterium GP-6 
2.30.1.7.1.40679 OTU 3 seqs
prokMSA_id:32913 AJ293746 Actinoplanes aurantiacus strain IMSNU 22120
prokMSA_id:37020 AB047490 Actinoplanes aurantiacus 
prokMSA_id:39565 AB048220 Actinoplanes minutisporangius 
2.30.1.7.2 SCH.POLYMORPHA_SUBGROUP 6 seqs
2.30.1.7.2.13732 OTU 1 seq
prokMSA_id:37747 AJ244799 Gram-positive SOGA22 
2.30.1.7.2.14554 OTU 1 seq
prokMSA_id:30680 AF418967 clone HT2E3 
2.30.1.7.2.24417 OTU 4 seqs
prokMSA_id:11449 X72377 Sporichthya polymorpha DSM 46113
prokMSA_id:11451 AB025317 Sporichthya polymorpha IFO 12702
prokMSA_id:25897 AB006163 actinomycete isolate YU 736-21 
prokMSA_id:73031 AB006164 Sporichthya brevicatena 
2.30.1.7.4 FRANKIA_SUBGROUP 44 seqs
2.30.1.7.4.1330 OTU 1 seq
prokMSA_id:11490 X53208 Frankia sp. str. Ag45/Mut15
2.30.1.7.4.13614 OTU 1 seq
prokMSA_id:75656 AJ532700 clone Gitt-KF-183
2.30.1.7.4.1506 OTU 1 seq
prokMSA_id:79512 AF382115 clone ZA3111c 
2.30.1.7.4.1968 OTU 1 seq
prokMSA_id:42261 AF234156 #0319-7L14 
2.30.1.7.4.19816 OTU 1 seq
prokMSA_id:55589 AY093463 clone MB-A2-108 
2.30.1.7.4.2003 OTU 1 seq
prokMSA_id:11536 X92700 clone TM167
2.30.1.7.4.2023 OTU 1 seq
prokMSA_id:11547 AF110142 clone SAR432
2.30.1.7.4.2021 OTU 1 seq
prokMSA_id:11544 L40611 Frankia sp. str. AgB1-9
2.30.1.7.4.2098 OTU 1 seq
prokMSA_id:11591 AF027014 clone OPB41
2.30.1.7.4.2102 OTU 1 seq
prokMSA_id:11593 AF186415 clone UC43f
2.30.1.7.4.2764 OTU 1 seq
prokMSA_id:11621 L43597 str. Alnus rhizosphere soil amplicon
2.30.1.7.4.2766 OTU 1 seq
prokMSA_id:11622 L43598 str. Alnus rhizosphere soil amplicon
2.30.1.7.4.2779 OTU 1 seq
prokMSA_id:11627 AJ007290 Acidothermus cellulolyticus str. 11B ATCC 43068
2.30.1.7.4.2782 OTU 1 seq
prokMSA_id:11629 L40619 Frankia sp. str. SCN10a
2.30.1.7.4.2799 OTU 1 seq
prokMSA_id:11632 X92702 clone TM187
2.30.1.7.4.2797 OTU 1 seq
prokMSA_id:11631 X92698 clone TM112
2.30.1.7.4.32252 OTU 3 seqs
prokMSA_id:11537 U72717 Frankia Cea1.3 str. Cea1.3
prokMSA_id:11538 U72718 Frankia Cea5.1 str. Cea5.1
prokMSA_id:40609 AJ408869 Frankia sp. M16386 isolate M16386
2.30.1.7.4.35217 OTU 21 seqs
prokMSA_id:11453 L40612 Frankia sp. str. ARgP5
prokMSA_id:11492 L40616 Frankia sp. str. Dryas
prokMSA_id:11493 U69265 Frankia sp
prokMSA_id:11494 AF063639 Frankia sp
prokMSA_id:11495 AF034776 Frankia sp
prokMSA_id:11540 M55343 Frankia sp. str. CeD ORS 020606
prokMSA_id:11548 L40610 Frankia sp. str. ACoN24d
prokMSA_id:11598 M88466 Frankia sp. str. AcN14a
prokMSA_id:11620 AF063641 Frankia sp
prokMSA_id:11624 U60284 Frankia sp. str. Darj16
prokMSA_id:11625 U60286 Frankia sp. str. lawj13
prokMSA_id:11626 U60287 Frankia sp. str. Shil19
prokMSA_id:11637 L40613 Frankia sp. str. AVN17s
prokMSA_id:11682 U60285 Frankia sp. str. Darj18
prokMSA_id:11692 L40622 Frankia "myricanod"
prokMSA_id:11704 AF158687 Frankia FE12 str. FE12
prokMSA_id:18201 AJ408870 Frankia sp. M16467 isolate M16467
prokMSA_id:22175 AJ408871 Frankia sp. M16464 isolate M16464
prokMSA_id:24386 AF050758 Frankia sp. FrCam 
prokMSA_id:34093 AJ408876 Frankia sp. MRn2-2 isolate MRn2-2
prokMSA_id:52184 AJ408872 Frankia sp. MpI1 isolate MpI1
2.30.1.7.4.6171 OTU 1 seq
prokMSA_id:42760 AF255632 clone Ebpr21 
2.30.1.7.4.6806 OTU 1 seq
prokMSA_id:73544 AF498729 Ellin347 
2.30.1.7.4.8361 OTU 1 seq
prokMSA_id:20753 AF050759 Frankia sp. FrCth 
2.30.1.7.4.9775 OTU 1 seq
prokMSA_id:44411 AF234148 #0319-7G21 
2.30.1.7.99 VARIOUS 2 seqs
2.30.1.7.99.32328 OTU 2 seqs
prokMSA_id:11431 AB021325 str. rJ7
prokMSA_id:11450 AB021332 str. rJ14
2.30.1.8 STREPTOMYCES_SUBDIVISION 613 seqs
2.30.1.8.1 STREPTOMYCES_AND_RELATIVES 427 seqs
2.30.1.8.1.1 STM.ALBUS_SUBSPECIES_ALBUS 1 seq
2.30.1.8.1.1.3441 OTU 1 seq
prokMSA_id:11716 X53163 Streptomyces albus subsp. albus DSM 40313
2.30.1.8.1.2 STM.SCABIEI_SUBGROUP 5 seqs
2.30.1.8.1.2.15818 OTU 1 seq
prokMSA_id:46555 AJ391817 Streptomyces sparsogenes strain NRRL 2940T
2.30.1.8.1.2.17417 OTU 1 seq
prokMSA_id:32361 AF361786 Streptomyces sp. S78 
2.30.1.8.1.2.19584 OTU 1 seq
prokMSA_id:33286 AB030585 Streptomyces ushikuensis 
2.30.1.8.1.2.3559 OTU 1 seq
prokMSA_id:11752 AF076309 Streptomyces EF-73
2.30.1.8.1.2.9504 OTU 1 seq
prokMSA_id:66692 AY094585 Streptomyces griseoruber 
2.30.1.8.1.3 KTS.SETAE_SUBGROUP 24 seqs
2.30.1.8.1.3.16726 OTU 1 seq
prokMSA_id:32241 AB022877 Kitasatospora sp. SK-3412 
2.30.1.8.1.3.19806 OTU 1 seq
prokMSA_id:48363 AY053479 AT425_EubY10 
2.30.1.8.1.3.31039 OTU 2 seqs
prokMSA_id:11829 AF074411 str. CN 671 DSM 41752
prokMSA_id:11830 AF074414 str. CN 668
2.30.1.8.1.3.33068 OTU 4 seqs
prokMSA_id:11793 AF074412 str. JL 415 DSM 41754
prokMSA_id:11798 AF074413 str. JL 134
prokMSA_id:11827 AF074409 str. J 195
prokMSA_id:11831 AF074415 str. JL 83 DSM 41753
2.30.1.8.1.3.3966 OTU 1 seq
prokMSA_id:81060 AB105068 Streptomyces aureofaciens strain:CMUAc130
2.30.1.8.1.3.41713 OTU 11 seqs
prokMSA_id:11795 U93328 Kitasatospora paracochleata str. 14769
prokMSA_id:11797 U93326 Kitasatospora melanogena JCM 3337
prokMSA_id:11821 U93318 Kitasatospora cystarginea str. RK-419 JCM 7356
prokMSA_id:11824 Y15504 Streptomyces aureofaciens str. A-377 NRRL 2209
prokMSA_id:11825 AF060792 Kitasatospora C2 str. C2
prokMSA_id:11826 Y15505 Streptomyces sp. str. 317
prokMSA_id:18850 AB022872 Kitasatospora cystarginea 
prokMSA_id:24904 U93316 Kitasatospora cochleata strain IFO 14768 
prokMSA_id:27121 AB045881 Streptomyces aureofaciens 
prokMSA_id:32322 AB022871 Kitasatospora cochleata 
prokMSA_id:52818 AB022874 Kitasatospora kifunense 
2.30.1.8.1.3.4316 OTU 1 seq
prokMSA_id:11802 U93322 Kitasatospora kifunense JCM 9081
2.30.1.8.1.3.4315 OTU 1 seq
prokMSA_id:11801 U93312 Kitasatospora azatica IFO 13803
2.30.1.8.1.3.4414 OTU 1 seq
prokMSA_id:11828 AF074410 str. JL 206 DSM 41755
2.30.1.8.1.3.6786 OTU 1 seq
prokMSA_id:36230 AF385681 Streptomyces beijiangensis 
2.30.1.8.1.8 STM.ARMENIACUS_SUBGROUP 11 seqs
2.30.1.8.1.8.15017 OTU 1 seq
prokMSA_id:30701 AB045871 Streptomyces cattleya 
2.30.1.8.1.8.15088 OTU 1 seq
prokMSA_id:23521 AY040614 Streptomyces sp. F50970 
2.30.1.8.1.8.15239 OTU 1 seq
prokMSA_id:46451 AF345862 Streptomyces sp. KACC 20159 
2.30.1.8.1.8.2416 OTU 1 seq
prokMSA_id:19464 AJ229209 from anoxic bulk soil clone BSV58
2.30.1.8.1.8.31049 OTU 3 seqs
prokMSA_id:11841 AB018094 Streptomyces armeniacus JCM 3070
prokMSA_id:11842 AB018093 Streptomyces armeniacus JCM 3070
prokMSA_id:11843 AB018092 Streptomyces armeniacus JCM 3070
2.30.1.8.1.8.41916 OTU 2 seqs
prokMSA_id:43242 AJ391837 Streptomyces melanosporofaciens strain NRRL B-12234T
prokMSA_id:46620 AJ271887 Streptomyces melanosporofaciens strain NRRL B-12234T
2.30.1.8.1.8.4482 OTU 1 seq
prokMSA_id:11848 X87316 str. SR 257
2.30.1.8.1.8.4498 OTU 1 seq
prokMSA_id:11852 AF101415 Streptomyces CN732 str. CN 732
2.30.1.8.1.9 STM.MASHUENSIS_SUBGROUP 7 seqs
2.30.1.8.1.9.16017 OTU 1 seq
prokMSA_id:69481 AB045870 Streptomyces cattleya 
2.30.1.8.1.9.19617 OTU 1 seq
prokMSA_id:26087 AF233375 Streptomyces sp. 11AG8 
2.30.1.8.1.9.3339 OTU 1 seq
prokMSA_id:72508 AY039806 Earthworm burrow B33D1 
2.30.1.8.1.9.4520 OTU 1 seq
prokMSA_id:11859 Z68099 Streptomyces macrosporus DSM 41449
2.30.1.8.1.9.4532 OTU 1 seq
prokMSA_id:11861 Z68100 Streptomyces megasporus DSM 41476
2.30.1.8.1.9.4534 OTU 1 seq
prokMSA_id:11863 Z68097 Streptomyces thermolineatus DSM 41451
2.30.1.8.1.9.6515 OTU 1 seq
prokMSA_id:19964 AF391982 thermal soil clone YNPFFP59 
2.30.1.8.1.10 THERMOPHILIC_STREPTOMYCES 6 seqs
2.30.1.8.1.10.1023 OTU 1 seq
prokMSA_id:80057 AY193208 actinobacterium clone Bol7 
2.30.1.8.1.10.31089 OTU 2 seqs
prokMSA_id:11881 AF154093 clone BPC063
prokMSA_id:11882 AB015539 str. BD2-10
2.30.1.8.1.10.4557 OTU 1 seq
prokMSA_id:11871 X76705 Streptomyces sp. str. TB3481
2.30.1.8.1.10.7423 OTU 1 seq
prokMSA_id:67031 AJ306762 clone SHA-34
2.30.1.8.1.10.9929 OTU 1 seq
prokMSA_id:44460 AF419679 a2b044 
2.30.1.8.1.11 STM.ALBIDOFLAVUS_SUBGROUP 3 seqs
2.30.1.8.1.11.3290 OTU 1 seq
prokMSA_id:50283 AY053493 At425_EubF1 
2.30.1.8.1.11.5291 OTU 1 seq
prokMSA_id:11920 X76702 Streptomyces sp. str. D921
2.30.1.8.1.11.5304 OTU 1 seq
prokMSA_id:11924 AF050572 clone WCHB1-81
2.30.1.8.1.12 STM.COELICOLOR_SUBGROUP 14 seqs
2.30.1.8.1.12.16461 OTU 1 seq
prokMSA_id:16585 AJ391830 Streptomyces sp. A14P1 S17 
2.30.1.8.1.12.30119 OTU 3 seqs
prokMSA_id:11950 AJ131819 clone 14
prokMSA_id:28782 AB054006 anoxic sludge KU1 
prokMSA_id:54215 AF375994 Candidatus Brocadia anammoxidans complete ; internal transcr
2.30.1.8.1.12.39777 OTU 5 seqs
prokMSA_id:62707 AF507852 actinobacterium clone ML602J-44 
prokMSA_id:80446 AF448193 actinobacterium clone ML615J-23 
prokMSA_id:80623 AF448198 actinobacterium clone ML817J-9 
prokMSA_id:80775 AF448192 actinobacterium clone ML615J-2 
prokMSA_id:81134 AF486498 actinobacterium ML602J-44 
2.30.1.8.1.12.5327 OTU 1 seq
prokMSA_id:11930 AF012737 Streptomyces ASSF15 str. ASSF15
2.30.1.8.1.12.5329 OTU 1 seq
prokMSA_id:11931 AF012741 Streptomyces ASB37 str. ASB37
2.30.1.8.1.12.5372 OTU 1 seq
prokMSA_id:11944 X81574 Streptomyces sp. NRRL 3890
2.30.1.8.1.12.5393 OTU 1 seq
prokMSA_id:11953 X53162 Streptomyces brasiliensis str. CCIB 71 DSM 43159
2.30.1.8.1.12.9164 OTU 1 seq
prokMSA_id:67228 AF492845 Streptomyces sp. NK528 
2.30.1.8.1.99 VARIOUS 356 seqs
2.30.1.8.1.99.37457 OTU 145 seqs
prokMSA_id:11734 AF068055 Streptomyces Z2 str. Z2
prokMSA_id:11757 D85119 Streptomyces virginiae IFO 3729
prokMSA_id:11807 AB006154 Trichotomospora caesia IFO 14562
prokMSA_id:11808 X95471 Actinomyces sp. str. SR 25
prokMSA_id:11845 X62884 Streptomyces rimosus =rrnF
prokMSA_id:11846 X81573 Amycolatopsis orientalis subsp. lurida DSM 43187
prokMSA_id:11847 AF117304 Streptomyces malaysiensis str. ATB-11
prokMSA_id:11868 Z68101 Streptomyces thermodiastaticus DSM 40573
prokMSA_id:11870 Z68096 Streptomyces thermoviolaceus subsp. thermoviolaceus str. ISP
prokMSA_id:11873 Z68095 Streptomyces thermoviolaceus subsp. apingens DSM 41392
prokMSA_id:11874 AF060793 Streptomyces X13 str. X13
prokMSA_id:11876 U94487 Streptomyces thermocarboxydovorans DSM 44294
prokMSA_id:11877 U94488 Streptomyces thermocarboxydovorans DSM 44295
prokMSA_id:11878 U94489 Streptomyces thermocarboxydovorans DSM 44296
prokMSA_id:11879 AJ001434 Streptomyces thermodiastaticus str. NAR 85
prokMSA_id:11880 AB018096 Streptomyces thermodiastaticus JCM 4840
prokMSA_id:11883 Z68094 Streptomyces thermovulgaris str. ISP 5444 DSM 40444
prokMSA_id:11884 Z68098 Streptomyces thermovulgaris str. ISP 5579 DSM 40579
prokMSA_id:11889 AJ000284 Streptomyces thermoalcalitolerans str. TA56 DSM 41741
prokMSA_id:11890 Z76676 Streptomyces albidoflavus DSM 40455
prokMSA_id:11891 Z76684 Streptomyces canescens DSM 40001
prokMSA_id:11892 Z76677 Streptomyces albidoflavus DSM 40792
prokMSA_id:11893 Z76683 Streptomyces albidoflavus DSM 40880
prokMSA_id:11894 Z76685 Streptomyces albidoflavus DSM 46452
prokMSA_id:11912 Z76682 Streptomyces odorifer DSM 40347
prokMSA_id:11913 Z76680 Streptomyces sampsonii DSM 40394
prokMSA_id:11914 Z76679 Streptomyces limosus DSM 40131
prokMSA_id:11915 Z76681 Streptomyces felleus DSM 40130
prokMSA_id:11916 Z76678 Streptomyces coelicolor DSM 40233
prokMSA_id:11917 D63871 Streptomyces sampsonii ATCC 25495
prokMSA_id:11919 Z76688 Streptomyces rutgersensis subsp. rutgersensis DSM 40077
prokMSA_id:11921 Z76686 Streptomyces intermedius DSM 40372
prokMSA_id:11922 AF114034 Streptomyces nodosus ATCC 14899
prokMSA_id:11923 Z76687 Streptomyces gougerotii DSM 40324
prokMSA_id:11925 U94490 Streptomyces thermocarboxydus str. AT37 DSM 44293
prokMSA_id:11926 AJ249627 Streptomyces thermocarboxydus str. NH50
prokMSA_id:11927 AJ001433 Streptomyces NT 322 str. NT 322 strain
prokMSA_id:11928 Y00484 Streptomyces lividans str. TK21 =rrnB
prokMSA_id:11932 X80826 Streptomyces espinosus NRRL 5729
prokMSA_id:11933 M27245 Streptomyces ambofaciens
prokMSA_id:11934 AF184081 Streptomyces sp. A25 
prokMSA_id:11936 X60514 Streptomyces coelicolor
prokMSA_id:11937 X86354 Streptomyces lividans str. TK21
prokMSA_id:11938 X95968 Streptomyces lividans str. TK21
prokMSA_id:11939 X95969 Streptomyces lividans str. TK21
prokMSA_id:11940 D63870 Streptomyces eurythermus ATCC 14975
prokMSA_id:11941 AF114033 Streptomyces nodosus ATCC 14899
prokMSA_id:11942 AF114035 Streptomyces nodosus ATCC 14899
prokMSA_id:11943 AF114036 Streptomyces nodosus ATCC 14899
prokMSA_id:11946 Y00411 Streptomyces coelicolor str. A32
prokMSA_id:11948 X79322 Streptomyces glaucescens
prokMSA_id:11949 X80827 Streptomyces pseudogriseolus NRRL 3985
prokMSA_id:11951 AF026080 Streptomyces CHR3 str. CHR3
prokMSA_id:11952 AF170913 Streptomyces goraiensis str. MTCC 3154
prokMSA_id:11954 D63873 Streptomyces tendae ATCC 19812
prokMSA_id:11955 AF026081 Streptomyces CHR28 str. CHR28
prokMSA_id:11956 X95470 str. SR 179c
prokMSA_id:11960 X80824 Streptomyces caelestis NRRL 2418
prokMSA_id:11962 X99942 Streptomyces vellosus NRRL 8037
prokMSA_id:11964 X79324 Streptomyces bluensis
prokMSA_id:16535 AF112168 Streptomyces sp. EF-14 
prokMSA_id:16715 AJ391813 Streptomyces sp. NRRL 2834 
prokMSA_id:16836 AJ399483 Streptomyces afghaniensis strain ISP 5228
prokMSA_id:16961 AY029353 Streptomyces thermoviolaceus strain AB106 
prokMSA_id:17895 AF336800 Streptomyces yatensis 
prokMSA_id:19021 AJ391818 Streptomyces sp. NRRL B-1865 
prokMSA_id:19075 AY039029 Streptomyces lividans strain TK24 
prokMSA_id:19795 AJ399494 Streptomyces sp. strain ISP 5592
prokMSA_id:20194 AJ391836 Streptomyces sp. B13P3 S35 
prokMSA_id:20295 AF429400 Streptomyces sp. VTT E-99-1336 B329 
prokMSA_id:22974 AJ007403 Streptomyces somaliensis strain DSM 40738 
prokMSA_id:23819 AJ391829 Streptomyces sp. A23R2 S6 
prokMSA_id:24056 AJ391831 Streptomyces sp. D13P3 S23 
prokMSA_id:24163 AL353862 Streptomyces coelicolor cosmid E34
prokMSA_id:24293 AJ391823 Streptomyces violaceusniger strain NRRL-ISP 5563T
prokMSA_id:24646 AL109848 Streptomyces coelicolor cosmid I51
prokMSA_id:24827 AF429397 Streptomyces sp. VTT E-99-1333 B306 
prokMSA_id:24956 AF429394 Streptomyces sp. VTT E-99-1330 A83 
prokMSA_id:25222 AB045866 Streptomyces griseus subsp. griseus 
prokMSA_id:26260 AB045888 Streptomyces purpurascens 
prokMSA_id:26614 AJ007400 Streptomyces somaliensis strain DSM 40267 
prokMSA_id:26713 AF369704 Streptomyces roseoflavus 
prokMSA_id:27371 AJ399486 Streptomyces sp. strain ISP 5310
prokMSA_id:28806 AF005018 Nocardioides thermolilacinus 
prokMSA_id:29997 AJ391826 Streptomyces sp. D6R1 S2 
prokMSA_id:30101 AB045864 Streptomyces hygroscopicus subsp. hygroscopicus 
prokMSA_id:31629 AJ399478 Streptomyces janthinus strain ISP 5206
prokMSA_id:32226 AJ391834 Streptomyces sp. A10P1 S27 
prokMSA_id:33034 AY029697 Streptomyces sp. KN-0260 
prokMSA_id:33773 AF112169 Streptomyces sp. EF-16 
prokMSA_id:33840 AB052845 Streptomyces sp. AP77 
prokMSA_id:35830 AB045865 Streptomyces heteromorphus 
prokMSA_id:35911 AF233338 Streptomyces maritimus 
prokMSA_id:36096 AF333113 Streptomyces sp. AT10 
prokMSA_id:36466 AJ391828 Streptomyces sp. C9P3 S4 
prokMSA_id:36606 AL356612 Streptomyces coelicolor cosmid D72A
prokMSA_id:37438 AJ007399 Streptomyces somaliensis strain DSM 40760 
prokMSA_id:37883 AF112172 Streptomyces sp. EF-60 
prokMSA_id:38469 AY015428 Streptomyces kathirae 
prokMSA_id:39423 AJ420320 Streptomyces sp. UAH44 strain UAH44
prokMSA_id:39533 AJ391822 Streptomyces violaceusniger strain NRRL B-1476T
prokMSA_id:40365 AL353861 Streptomyces coelicolor cosmid 1A8A
prokMSA_id:42266 AJ391827 Streptomyces sp. C4R3 S3 
prokMSA_id:42859 AJ391833 Streptomyces sp. B22P3 S26 
prokMSA_id:43665 AJ391825 Streptomyces sp. B23P1 S1 
prokMSA_id:43737 AJ391812 Streptomyces sp. NRRL B-1356 
prokMSA_id:44142 AF441168 Streptomyces sp. CH-M-1035 
prokMSA_id:44263 AJ399482 Streptomyces thermotolerans strain ISP 5227
prokMSA_id:44555 AJ308576 Streptomyces sp. So54 strain So54
prokMSA_id:45542 AL079345 Streptomyces coelicolor cosmid E68
prokMSA_id:47276 AF005019 Nocardioides thermolilacinus 
prokMSA_id:47677 AJ391819 Streptomyces hygroscopicus strain NRRL B-1477
prokMSA_id:47723 AF112165 Streptomyces sp. EF-2 
prokMSA_id:48254 AJ391832 Streptomyces sp. A33R1 S24 
prokMSA_id:48414 AJ391814 Streptomyces sp. NRRL 5799 
prokMSA_id:49146 Y15503 Streptomyces sp. strain ATCC10246
prokMSA_id:49805 AJ391820 Streptomyces hygroscopicus strain NRRL 2387T
prokMSA_id:49844 AF429393 Streptomyces sp. VTT E-99-1329 A52 
prokMSA_id:49899 AF295602 Streptomyces sp. SNG9 complete 
prokMSA_id:51020 AB045889 Streptomyces steffisburgensis 
prokMSA_id:51375 AB045880 Streptomyces albofaciens 
prokMSA_id:52246 AB045884 Streptomyces albus subsp. albus 
prokMSA_id:52271 AB045883 Streptomyces rimosus subsp. rimosus 
prokMSA_id:52286 AJ399472 Streptomyces sp. strain ISP 5133
prokMSA_id:54479 AF112171 Streptomyces sp. EF-51 
prokMSA_id:57726 AL939119 Streptomyces coelicolor A32 complete genome; segment 16/29
prokMSA_id:57770 AL939116 Streptomyces coelicolor A32 complete genome; segment 13/29
prokMSA_id:57771 AL939114 Streptomyces coelicolor A32 complete genome; segment 11/29
prokMSA_id:57773 AL939108 Streptomyces coelicolor A32 complete genome; segment 5/29
prokMSA_id:59982 AF452714 Streptomyces speibonae 
prokMSA_id:63139 AF112173 Streptomyces sp. EF-76 
prokMSA_id:63867 AJ494865 Streptomyces albogriseolus strain NRRL B-1305T
prokMSA_id:67229 AF492844 Streptomyces sp. NK1057 
prokMSA_id:68935 AJ391835 Streptomyces sp. A4R2 S34 
prokMSA_id:69484 AB045867 Streptomyces griseus subsp. griseus 
prokMSA_id:69739 AB045886 Streptomyces nogalater 
prokMSA_id:70639 AF290616 Streptomyces roseoflavus 
prokMSA_id:73438 X62884 Streptomyces rimosus 23S and 5S genes
prokMSA_id:74503 AB045859 Streptomyces panayensis 
prokMSA_id:74668 AJ399491 Streptomyces sp. strain ISP 5499
prokMSA_id:75213 AJ519937 Streptomyces sp. GE 90930 strain GE 90930
prokMSA_id:77075 AJ519938 Streptomyces sp. GE 90852 strain GE 90852
prokMSA_id:77970 AB088069 Streptomyces sp. TP-A0274 
prokMSA_id:78531 AY177662 Streptomyces sp. 40003 
prokMSA_id:81466 AY079156 Streptomyces sp. VK-A60 
2.30.1.8.1.99.41384 OTU 6 seqs
prokMSA_id:11781 AF012740 Streptomyces ASB33 str. ASB33
prokMSA_id:11804 U22973 Streptomyces sp. str. GP 773; isolate E. Atalan A81319
prokMSA_id:40872 AJ391816 Streptomyces sp. NRRL 8097 
prokMSA_id:42735 AF306638 Streptomyces sp. PR4.0307 
prokMSA_id:50889 AJ399475 Streptomyces longisporus strain ISP 5166
prokMSA_id:76330 AY148079 Streptomyces sp. EN35 
2.30.1.8.1.99.41702 OTU 2 seqs
prokMSA_id:11811 D85112 Streptomyces lavendulae subsp. lavendulae IFO 12344
prokMSA_id:23870 AF346818 Streptomyces yunnanensis 
2.30.1.8.1.99.42235 OTU 201 seqs
prokMSA_id:11718 D63867 Streptomyces diastatochromogenes ATCC 12309
prokMSA_id:11719 D63869 Streptomyces neyagawaensis ATCC 27449
prokMSA_id:11721 X87312 str. SR 168
prokMSA_id:11723 D63864 Streptomyces scabiei str. SNS-26
prokMSA_id:11725 Z71365 Streptomyces seoulensis str. IMSNU-1 IMSNU 21266
prokMSA_id:11726 D63866 Streptomyces sp. str. 91-Sy-13
prokMSA_id:11727 Y10843 Streptomyces sp. str. C7655
prokMSA_id:11728 AJ007427 Streptomyces sp. str. CFBP4530
prokMSA_id:11730 Y15495 Streptomyces sp. str. 287
prokMSA_id:11731 Y15496 Streptomyces sp. str. 298
prokMSA_id:11732 Y15499 Streptomyces sp. str. 300
prokMSA_id:11733 X79325 Streptomyces galbus DSM 40480
prokMSA_id:11735 AF145223 Streptomyces avermitilis str. NCIBM 12804T
prokMSA_id:11736 D63862 Streptomyces scabiei ATCC 49173
prokMSA_id:11737 D63868 Streptomyces bottropensis ATCC 25435
prokMSA_id:11738 AJ007429 Streptomyces sp. str. CFBP4521
prokMSA_id:11740 X79853 Streptomyces hygroscopicus
prokMSA_id:11741 D63863 Streptomyces scabiei ATCC 33282
prokMSA_id:11742 AJ007423 Streptomyces sp. str. CFBP4497
prokMSA_id:11743 AJ007424 Streptomyces sp. str. CFBP4509
prokMSA_id:11744 AJ007425 Streptomyces sp. str. CFBP4508
prokMSA_id:11745 AJ007426 Streptomyces sp. str. CFBP4498
prokMSA_id:11746 Y15493 Streptomyces scabies str. SSC101
prokMSA_id:11747 Y15497 Streptomyces scabies str. 364
prokMSA_id:11748 Y15500 Streptomyces scabies str. 267
prokMSA_id:11749 Y15506 Streptomyces scabies str. 380
prokMSA_id:11750 Y15508 Streptomyces scabies str. 302
prokMSA_id:11751 Y15509 Streptomyces scabies str. 289
prokMSA_id:11753 AF101414 Streptomyces JL164 str. JL 164
prokMSA_id:11754 X79852 Streptomyces galbus
prokMSA_id:11755 X87320 str. SR 70
prokMSA_id:11762 U22972 Streptomyces sp. str. GP 772; isolate E. Atalan A46R47
prokMSA_id:11764 D63872 Streptomyces setonii ATCC 25497
prokMSA_id:11765 Y10844 Streptomyces sp. str. B71277
prokMSA_id:11766 U93336 Streptomyces JCM7249 JCM 7249
prokMSA_id:11767 U93338 Streptomyces JCM7250 JCM 7250
prokMSA_id:11769 X92614 Micromonospora megalomicea subsp. megalomicea str. DSM 43892
prokMSA_id:11770 X87309 str. SR 119
prokMSA_id:11771 Y15498 Streptomyces sp. str. 254
prokMSA_id:11772 AF012738 Streptomyces ASSF22 str. ASSF22
prokMSA_id:11773 AF012739 Streptomyces ASB27 str. ASB27
prokMSA_id:11777 AB006159 Streptomyces microstreptospora IFO 14669
prokMSA_id:11778 Y15501 Streptomyces griseus ATCC 10137
prokMSA_id:11779 Y15502 Streptomyces griseus
prokMSA_id:11780 AF012736 Streptomyces ASSF13 str. ASSF13
prokMSA_id:11783 AB030567 Streptomyces griseus subsp. griseus str. 2247
prokMSA_id:11784 AB030568 Streptomyces griseus subsp. griseus str. 2247
prokMSA_id:11785 AB030569 Streptomyces griseus subsp. griseus str. 2247
prokMSA_id:11786 AB030570 Streptomyces griseus subsp. griseus str. 2247
prokMSA_id:11787 AB030571 Streptomyces griseus subsp. griseus str. 2247
prokMSA_id:11788 AB030572 Streptomyces griseus subsp. griseus str. 2247
prokMSA_id:11789 U93330 Kitasatospora phosalacinea str. KA-338 JCM 3340
prokMSA_id:11790 U93314 Kitasatospora brunnea IFO 14627
prokMSA_id:11794 X79326 Streptomyces ornatus DSM 40307
prokMSA_id:11796 U93320 Kitasatospora griseola str. AM-9660 JCM 3339
prokMSA_id:11800 U22974 Streptomyces sp. str. GP 770; isolate E. Atalan A46R51
prokMSA_id:11805 Y10842 Streptomyces sp. str. A46R62
prokMSA_id:11806 X80825 Streptomyces subrutilus DSM 40445
prokMSA_id:11815 U93332 Kitasatospora setae JCM 3304
prokMSA_id:11832 X79851 Streptomyces bikiniensis DSM 40581
prokMSA_id:11849 X99943 Streptomyces griseocarneus DSM 40004
prokMSA_id:11853 Y15507 Streptomyces lydicus str. D-45 ATCC 25470
prokMSA_id:11855 AB024440 Streptomyces albulus str. IMC S-0802 ISP 5492
prokMSA_id:11856 AB024441 Streptomyces kasugaensis str. M338-M1
prokMSA_id:11857 AB024442 Streptomyces kasugaensis str. MB273-C4
prokMSA_id:11858 AB024443 Streptomyces albulus str. MF861-C4
prokMSA_id:11864 X79323 Streptomyces mashuensis DSM 40221
prokMSA_id:11872 AB018095 Streptomyces thermodiastaticus JCM 4840
prokMSA_id:11935 X60514 Streptomyces coelicolor str. M145; A32
prokMSA_id:17191 AB045890 Streptomyces venezuelae 
prokMSA_id:17449 AJ308575 Streptomyces sp. So10 strain So10
prokMSA_id:19804 AF112160 Streptomyces caviscabies strain ATCC51928 
prokMSA_id:20768 AF112174 Streptomyces sp. EF-91 
prokMSA_id:20942 AB022868 Kitasatospora setae 
prokMSA_id:21602 AB045885 Streptomyces argillaceus 
prokMSA_id:21902 AF429398 Streptomyces sp. VTT E-99-1334 B309 
prokMSA_id:22704 AF331829 Streptomyces sp. R22 
prokMSA_id:23352 AB022879 Kitasatospora sp. OM-5023 
prokMSA_id:24460 AJ310923 Streptomyces griseochromogenes strain DSM 40499
prokMSA_id:24555 AF221837 Streptomyces sp. AA8321 
prokMSA_id:26657 AF112159 Streptomyces sp. EF-52 
prokMSA_id:26679 AF361782 Streptomyces turgidiscabies strain S27 
prokMSA_id:26737 AB022876 Kitasatospora sp. SK-3406 
prokMSA_id:27046 AY043395 Streptomyces sp. KJ-72 complete 
prokMSA_id:27863 AJ399487 Streptomyces cinnabarinus strain ISP 5467
prokMSA_id:27887 AB045858 Streptomyces viridochromogenes 
prokMSA_id:30298 AF306657 Streptomyces thermosacchari strain K127 
prokMSA_id:30552 AF397893 Streptomyces bottropensis strain LE-3A 
prokMSA_id:30608 AF385185 Streptomyces scabiei strain SBH-3 
prokMSA_id:30648 AF429392 Streptomyces sp. VTT E-99-1328 A14 
prokMSA_id:30686 AF306659 Streptomyces thermosacchari strain K122 
prokMSA_id:30734 AF306658 Streptomyces thermosacchari strain K126 
prokMSA_id:30880 AY029698 Streptomyces sp. KN-0479 
prokMSA_id:31028 AF112179 Streptomyces sp. OB-35 
prokMSA_id:31047 AJ278761 Streptomyces sp. strain 346
prokMSA_id:32477 AF385182 Streptomyces sp. DNK-G02 
prokMSA_id:32576 AB045879 Streptomyces tauricus 
prokMSA_id:33895 AF429391 Streptomyces sp. VTT E-99-1327 A6 
prokMSA_id:34014 AB045861 Streptomyces lipmanii 
prokMSA_id:34787 AF429395 Streptomyces sp. VTT E-99-1331 A91 
prokMSA_id:34932 AF112166 Streptomyces sp. EF-4 
prokMSA_id:35011 AF112175 Streptomyces sp. EF-93 
prokMSA_id:35160 AF423260 soil clone 41-1 
prokMSA_id:35613 AF361781 Streptomyces scabiei strain S33 
prokMSA_id:35664 AY029699 Streptomyces sp. KN-1220 
prokMSA_id:35685 AJ308577 Streptomyces sp. Nm5 strain Nm5
prokMSA_id:36266 AJ427923 Kitasatospora sp. PU22869 
prokMSA_id:37181 AF454764 Streptomyces lateritius 
prokMSA_id:38018 AJ007402 Streptomyces thermocoprophilus strain B19 
prokMSA_id:38300 AF361784 Streptomyces sp. S63 
prokMSA_id:39463 AB022873 Kitasatospora paracochleata 
prokMSA_id:40540 AJ278759 Streptomyces sp. strain 65
prokMSA_id:40593 AF423208 soil clone 1056-2 
prokMSA_id:40717 AB022878 Kitasatospora sp. SK-3421 
prokMSA_id:41040 AJ278758 Streptomyces sp. strain 7
prokMSA_id:41535 AB045876 Streptomyces bobili 
prokMSA_id:42621 AJ308571 Streptomyces sp. Sm22 strain Sm22
prokMSA_id:42671 AF385186 Streptomyces scabiei strain KD75173 
prokMSA_id:42935 AB045882 Streptomyces platensis 
prokMSA_id:43555 AF429390 Streptomyces sp. VTT E-99-1326 A4 
prokMSA_id:43763 AJ308574 Streptomyces sp. Soll53 strain Soll53
prokMSA_id:43914 AF429396 Streptomyces sp. VTT E-99-1332 B301 
prokMSA_id:44772 AB045869 Streptomyces clavuligerus 
prokMSA_id:45302 AF332543 Streptomyces sp. B7 
prokMSA_id:45323 AB022870 Kitasatospora griseola 
prokMSA_id:45416 AJ278760 Streptomyces sp. strain 206
prokMSA_id:45786 AB045872 Streptomyces argenteolus 
prokMSA_id:46425 AJ315072 Streptomyces sp. 19504 
prokMSA_id:47420 AF112154 Streptomyces sp. EF-35 
prokMSA_id:47571 AF275257 Streptomyces sp. LS-1 
prokMSA_id:47730 AF385183 Streptomyces scabiei strain DNK-043 
prokMSA_id:48669 AJ399493 Streptomyces neyagawaensis strain ISP 5588
prokMSA_id:48947 AF112170 Streptomyces sp. EF-25 
prokMSA_id:49115 AF397892 Streptomyces bottropensis strain LE-2 
prokMSA_id:49364 AB045887 Streptomyces peucetius 
prokMSA_id:49929 AF385181 Streptomyces scabiei strain B-4 
prokMSA_id:50005 AB022869 Kitasatospora phosalacinea 
prokMSA_id:50088 AF385184 Streptomyces sp. DNK-G10 
prokMSA_id:50437 AJ310927 Streptomyces cyaneus strain DSM 40108
prokMSA_id:50476 AF389344 Streptomyces sp. YIM8 
prokMSA_id:51675 AF389343 Streptomyces sp. YIM26 
prokMSA_id:51815 AB022875 Kitasatospora sp. SK-3255 
prokMSA_id:51904 AJ007401 Streptomyces somaliensis strain M29 
prokMSA_id:51985 AY057090 Streptomyces scabiei subsp. chosun 
prokMSA_id:52561 AB045863 Streptomyces jumonjinensis 
prokMSA_id:52924 AB026221 Streptomyces turgidiscabies 23S complete and strain:ATCC 700
prokMSA_id:53139 AB026219 Streptomyces neyagawaensis 23S complete and strain:ATCC 2744
prokMSA_id:53324 AB026203 Streptomyces scabies 23S complete and strain:84232
prokMSA_id:53328 AB026206 Streptomyces scabies 23S complete and strain:CEK-037
prokMSA_id:53367 AB026199 Streptomyces scabies 23S complete and strain:ATCC 49173
prokMSA_id:53444 AB026208 Streptomyces scabies 23S complete and strain:84102
prokMSA_id:53580 AB026216 Streptomyces scabies 23S complete and strain:E-2
prokMSA_id:53692 AB026209 Streptomyces scabies 23S complete and strain:8779
prokMSA_id:54076 AB026212 Streptomyces scabies 23S complete and strain:8770
prokMSA_id:54131 AB026200 Streptomyces scabies 23S complete and strain:SNS-26
prokMSA_id:54153 AB026204 Streptomyces scabies 23S complete and strain:RB2
prokMSA_id:54184 AB026217 Streptomyces bottropensis 23S complete and strain:ATCC 25435
prokMSA_id:54201 AB026207 Streptomyces scabies 23S complete and strain:84174
prokMSA_id:54425 AB026213 Streptomyces scabies 23S complete and strain:8776
prokMSA_id:54520 AB026211 Streptomyces scabies 23S complete and strain:LQH-4
prokMSA_id:54592 AF429399 Streptomyces sp. VTT E-99-1335 B323 
prokMSA_id:54645 AB026202 Streptomyces scabies 23S complete and strain:8722
prokMSA_id:54735 AB026201 Streptomyces scabies 23S complete and strain:ATCC 33282
prokMSA_id:54757 AB026205 Streptomyces scabies 23S complete and strain:R90-3
prokMSA_id:54792 AB026215 Streptomyces scabies 23S complete and strain:E-1
prokMSA_id:54803 AB026210 Streptomyces scabies 23S complete and strain:LM5MT-2
prokMSA_id:54981 AB026214 Streptomyces scabies 23S complete and strain:DNK-G01
prokMSA_id:56543 AF346483 Streptomyces tumescens strain Km-2-1 complete 
prokMSA_id:56621 AY114179 Streptomyces sp. AS 4.1182 
prokMSA_id:58872 AF423076 Actinobacterium '#59 white' 
prokMSA_id:62746 AF403713 Streptomyces sp. C1 
prokMSA_id:62750 AF401982 Streptomyces sp. P5 
prokMSA_id:63868 AJ494864 Streptomyces flavogriseus strain CBS 101.34T
prokMSA_id:64271 AF395539 Streptomyces sp. YU100 
prokMSA_id:65595 AF513222 Streptomyces albogriseus 
prokMSA_id:65596 AF513223 Streptomyces viridocyaneus 
prokMSA_id:66693 AY094371 Streptomyces griseus subsp. griseus ISP 5236 
prokMSA_id:66695 AY094368 Streptomyces aureus B7319 
prokMSA_id:66696 AY094367 Streptomyces laceyi c7654 
prokMSA_id:66697 AY094366 Streptomyces laceyi c765 
prokMSA_id:67018 AF500071 Streptomyces phaeochromogenes 
prokMSA_id:67674 AF346482 Streptomyces tumescens strain Km-1-1 complete 
prokMSA_id:67675 AF346481 Streptomyces tumescens strain Cu-3-1 complete 
prokMSA_id:67676 AF346480 Streptomyces tumescens strain Cu-2-1 complete 
prokMSA_id:67680 AF346476 Streptomyces tumescens strain B-7-2 complete 
prokMSA_id:67682 AF346474 Streptomyces indigocolor strain NRRL B-12336 complete 
prokMSA_id:69713 AB045868 Streptomyces fimbriatus 
prokMSA_id:69890 AJ310924 Streptomyces peruviensis strain DSM 40592
prokMSA_id:71929 AF306639 Streptomyces sp. 11709 
prokMSA_id:72661 AF423240 soil clone 228-1 
prokMSA_id:73604 X79326 S.ornatus DSM 40307 
prokMSA_id:75046 AY154478 Streptomyces sp. A3 
prokMSA_id:75518 AY148074 Streptomyces sp. EN23 
prokMSA_id:75542 AY148077 Streptomyces sp. EN3 
prokMSA_id:76219 AY154479 Streptomyces sp. A13 
prokMSA_id:77149 AY148087 Streptomyces sp. EN9 
prokMSA_id:77191 AY148083 Streptomyces sp. EN57 
prokMSA_id:77446 AY167807 Streptomyces platensis strain SAFN-030 
prokMSA_id:77539 AY167847 Streptomyces caviscabies strain SAFR-024 
prokMSA_id:78360 AB078897 Streptomyces avermitilis Streptomyces avermectinius 
prokMSA_id:78850 AJ536294 Streptomyces sp. AP19-1 strain AP19-1
2.30.1.8.1.99.42828 OTU 2 seqs
prokMSA_id:37731 AJ308572 Streptomyces sp. Soll14 strain Soll14
prokMSA_id:50040 AJ308573 Streptomyces sp. Nu40 strain Nu40
2.30.1.8.2 ACTINOMADURA_SUBGROUP 95 seqs
2.30.1.8.2.1 NOCARDIOPSIS_SUBGROUP 52 seqs
2.30.1.8.2.1.1 TBF.FUSCA_SUBGROUP 11 seqs
2.30.1.8.2.1.1.12529 OTU 1 seq
prokMSA_id:23192 AF351232 actinobacterium clone 4-42 
2.30.1.8.2.1.1.13452 OTU 1 seq
prokMSA_id:52732 AJ298058 Thermobifida cellulolytica strain TB100
2.30.1.8.2.1.1.30770 OTU 4 seqs
prokMSA_id:11965 AF002260 Thermobifida alba JCM 3077
prokMSA_id:11966 AF028247 Thermobifida alba str. T-3 ATCC 27644
prokMSA_id:11967 AF002265 Thermomonospora mesouviformis str. 3169
prokMSA_id:45805 AB006170 Thermomonospora mesophila strain IFO 14179 
2.30.1.8.2.1.1.31655 OTU 3 seqs
prokMSA_id:11968 AF028245 Thermobifida fusca str. 190Th ATCC 27730
prokMSA_id:11970 AF002264 Thermobifida fusca str. 190Th ATCC 27730
prokMSA_id:32820 AB006171 Thermomonospora fusca strain IFO 14071 
2.30.1.8.2.1.1.42768 OTU 2 seqs
prokMSA_id:63108 AY093478 clone MC-C2-120 
prokMSA_id:63110 AY093472 clone MB-B2-107 
2.30.1.8.2.1.2 NRP.DASSONVILLEI_SUBGROUP 41 seqs
2.30.1.8.2.1.2.12932 OTU 1 seq
prokMSA_id:68398 AY082064 Nocardiopsis sp. YIM90006 
2.30.1.8.2.1.2.12929 OTU 1 seq
prokMSA_id:68396 AY082066 Nocardiopsis sp. YIM90014 
2.30.1.8.2.1.2.13965 OTU 1 seq
prokMSA_id:53459 AF195412 Nocardiopsis kunsanensis HA-9T 
2.30.1.8.2.1.2.16863 OTU 1 seq
prokMSA_id:24444 AJ290448 Nocardiopsis halototerans strain DSM 44410
2.30.1.8.2.1.2.19378 OTU 1 seq
prokMSA_id:41061 AJ421018 Nocardiopsis halophila strain DSM 44494T
2.30.1.8.2.1.2.21259 OTU 1 seq
prokMSA_id:25615 AF251709 Brachystreptospora xinjiangensis 
2.30.1.8.2.1.2.32618 OTU 2 seqs
prokMSA_id:11972 AF178988 str. YIM90002
prokMSA_id:44196 AF462347 Streptomonospora albus 
2.30.1.8.2.1.2.34914 OTU 6 seqs
prokMSA_id:63691 AF361322 Nocardiopsis sp. 99-08-186A complete 
prokMSA_id:63697 AF328410 Nocardiopsis sp. 99-20-007A complete 
prokMSA_id:63702 AF328409 Nocardiopsis sp. 99-21-444A complete 
prokMSA_id:63705 AF328406 Nocardiopsis sp. 98-52-149A complete 
prokMSA_id:63707 AF328405 Nocardiopsis sp. 98-52-148A complete 
prokMSA_id:63708 AF328404 Nocardiopsis sp. 98-52-146A complete 
2.30.1.8.2.1.2.35151 OTU 24 seqs
prokMSA_id:11971 X97882 Nocardiopsis dassonvillei DSM 40465
prokMSA_id:11973 X97885 Nocardiopsis dassonvillei DSM 43884
prokMSA_id:11975 Y13593 Nocardiopsis synnemataformans str. D-1215 JCM 10456
prokMSA_id:11976 X97886 Nocardiopsis dassonvillei DSM 43111
prokMSA_id:11977 D85492 Nocardiopsis dassonvillei IFO 14626
prokMSA_id:11978 X97888 Nocardiopsis lucentensis DSM 44048
prokMSA_id:11979 X97883 Nocardiopsis alba DSM 43377
prokMSA_id:11980 Y07678 Prauseria hordei str. SH261
prokMSA_id:11981 Y07680 Prauseria hordei str. SH82
prokMSA_id:11982 X97887 Nocardiopsis listeri DSM 40297
prokMSA_id:11983 X97884 Nocardiopsis prasina DSM 43845
prokMSA_id:23374 AF479269 Nocardiopsis dassonvillei strain 823 
prokMSA_id:23931 AY036002 Nocardiopsis sp. 123 
prokMSA_id:25877 AY036004 Nocardiopsis sp. 64/93 
prokMSA_id:26617 AY036001 Nocardiopsis umidischolae 
prokMSA_id:33658 AY036003 Nocardiopsis sp. 704a 
prokMSA_id:41607 AF105971 Nocardiopsis tropica 
prokMSA_id:44792 AJ420769 Nocardiopsis metallicus strain R2A
prokMSA_id:47196 AY030320 Nocardiopsis dassonvillei strain JPL-3 
prokMSA_id:52175 AY027776 Nocardiopsis alba 
prokMSA_id:55246 AF540000 Nocardiopsis tangguensis 
prokMSA_id:55606 AY117435 Nocardiopsis viridoflava 
prokMSA_id:67687 AF360735 Nocardiopsis alba KS21 
prokMSA_id:79107 AJ539401 Nocardiopsis aegyptica strain DSM 44442
2.30.1.8.2.1.2.42067 OTU 2 seqs
prokMSA_id:67689 AF360734 Nocardiopsis compostus KS9 
prokMSA_id:67690 AF360733 Nocardiopsis compostus KS8 
2.30.1.8.2.1.2.594 OTU 1 seq
prokMSA_id:63704 AF328401 Nocardiopsis sp. 97-38-018A complete 
2.30.1.8.2.2 THS.BISPORA_SUBGROUP 6 seqs
2.30.1.8.2.2.31247 OTU 2 seqs
prokMSA_id:11989 U83909 Thermobispora bispora str. R51 ATCC 19993 =
prokMSA_id:11990 U83911 Thermobispora bispora str. R51 ATCC 19993 =rrnC
2.30.1.8.2.2.31698 OTU 4 seqs
prokMSA_id:11985 U83910 Thermobispora bispora str. R51 ATCC 19993 =rrnB
prokMSA_id:11986 U83912 Thermobispora bispora str. R51 ATCC 19993 =rrnD
prokMSA_id:11987 U58524 Microbispora bispora JCM 3082
prokMSA_id:11988 U58523 Thermobispora bispora str. R51 ATCC 19993
2.30.1.8.2.3 TMMS.CURVATA_SUBGROUP 4 seqs
2.30.1.8.2.3.31253 OTU 3 seqs
prokMSA_id:11996 X97893 Thermomonospora curvata DSM 43183
prokMSA_id:11998 AF002262 Thermomonospora curvata JCM 3096
prokMSA_id:11999 D86945 Thermomonospora curvata IFO 15933
2.30.1.8.2.3.5491 OTU 1 seq
prokMSA_id:11991 U49004 Actinomadura echinospora IFO 14042
2.30.1.8.2.4 AMD.HERBIDA_SUBGROUP 4 seqs
2.30.1.8.2.4.1021 OTU 1 seq
prokMSA_id:12003 AB015267 str. JTB31
2.30.1.8.2.4.14587 OTU 1 seq
prokMSA_id:39129 AF419678 a2b024 
2.30.1.8.2.4.5846 OTU 1 seq
prokMSA_id:74068 AF134068 Actinomadura glomerata 
2.30.1.8.2.4.9733 OTU 1 seq
prokMSA_id:51620 AF163117 Actinomadura longicatena 
2.30.1.8.2.5 AMD.MADURAE_SUBGROUP 29 seqs
2.30.1.8.2.5.10279 OTU 1 seq
prokMSA_id:28823 AF223348 Pseudonocardiaceae str. PA123 complete 
2.30.1.8.2.5.1059 OTU 1 seq
prokMSA_id:12028 U49009 Actinomadura macra IFO 14102
2.30.1.8.2.5.1078 OTU 1 seq
prokMSA_id:12030 U49003 Actinomadura cremea subsp. rifamycini IFO 14183
2.30.1.8.2.5.1089 OTU 1 seq
prokMSA_id:12039 AF154127 Actinomadura catellatospora str. AS4.1522T
2.30.1.8.2.5.1105 OTU 1 seq
prokMSA_id:12045 AB006157 Parvopolyspora pallida IFO 14788
2.30.1.8.2.5.11069 OTU 1 seq
prokMSA_id:30118 AF163121 Actinomadura umbrina 
2.30.1.8.2.5.15622 OTU 1 seq
prokMSA_id:31446 AF163116 Actinomadura livida 
2.30.1.8.2.5.32339 OTU 3 seqs
prokMSA_id:12046 X97890 Actinomadura kijaniata DSM 43764
prokMSA_id:12047 U49006 Actinomadura kijaniata IFO 14229
prokMSA_id:40889 AJ420134 Actinomadura namibiensis strain DSM 44197T
2.30.1.8.2.5.32634 OTU 2 seqs
prokMSA_id:12031 D86943 Excellospora viridilutea IFO 14480
prokMSA_id:27241 AF134069 Actinomadura rubrobrunea 
2.30.1.8.2.5.3796 OTU 1 seq
prokMSA_id:26839 AF163118 Actinomadura oligospora 
2.30.1.8.2.5.41251 OTU 6 seqs
prokMSA_id:12033 X97889 Actinomadura madurae DSM 43067
prokMSA_id:12038 AB006155 Streptomycoides glaucoflavus IFO 14668
prokMSA_id:12048 D85468 Actinomadura madurae IFO 14623
prokMSA_id:29049 AF223350 Pseudonocardiaceae str. PA151 complete 
prokMSA_id:37666 AF277195 Actinomadura mexicana 
prokMSA_id:45056 AJ420139 Actinomadura citrea strain DSM 43461T
2.30.1.8.2.5.41753 OTU 8 seqs
prokMSA_id:12014 AF002263 Actinomadura formosensis str. C-36820 JCM 7474
prokMSA_id:12032 U58527 Actinomadura madurae JCM 7436
prokMSA_id:12035 U49001 Actinomadura citrea IFO 14678
prokMSA_id:12036 U49011 Actinomadura verrucosospora IFO 14100
prokMSA_id:12037 U49008 Actinomadura luteofluorescens IFO 13057
prokMSA_id:16959 AF134067 Actinomadura cremea subsp. cremea 
prokMSA_id:25601 AB006172 Thermomonospora formosensis strain IFO 14204 
prokMSA_id:39421 AJ420140 Actinomadura formosensis strain DSM 43997T
2.30.1.8.2.5.5619 OTU 1 seq
prokMSA_id:51116 AY035998 Actinomadura latina 
2.30.1.8.2.5.6781 OTU 1 seq
prokMSA_id:29010 AF163122 Actinomadura yumaensis 
2.30.1.8.3 STREPTOSPORANGIUM_SUBGROUP 91 seqs
2.30.1.8.3.1 STS.NONDIASTATICUM_SUBGROUP 3 seqs
2.30.1.8.3.1.1126 OTU 1 seq
prokMSA_id:12059 U48996 Streptosporangium roseum JCM 3005
2.30.1.8.3.1.1142 OTU 1 seq
prokMSA_id:12061 Y07606 DA016 
2.30.1.8.3.1.1143 OTU 1 seq
prokMSA_id:12062 X70425 Streptosporangium roseum DSM 43021
2.30.1.8.3.2 STS.PSEUDOVULGARE_SUBGROUP 7 seqs
2.30.1.8.3.2.35344 OTU 7 seqs
prokMSA_id:12065 X89945 Streptosporangium nondiastaticum DSM 43848
prokMSA_id:12067 X89954 Streptosporangium viridialbum DSM 46131
prokMSA_id:12068 X89946 Streptosporangium pseudovulgare DSM 43181
prokMSA_id:12069 U48995 Streptosporangium pseudovulgare IFO 13991
prokMSA_id:12070 U48994 Streptosporangium nondiastaticum IFO 13990
prokMSA_id:12071 X89942 Streptosporangium fragile DSM 43847
prokMSA_id:12072 U48992 Streptosporangium fragile IFO 14311
2.30.1.8.3.3 STS.ROSEUM_SUBGROUP 17 seqs
2.30.1.8.3.3.1235 OTU 1 seq
prokMSA_id:12096 AF191735 Streptosporangium 15110 str. 15110
2.30.1.8.3.3.34438 OTU 16 seqs
prokMSA_id:12073 X89958 Streptosporangium sp. DSM 43137
prokMSA_id:12074 X87319 str. SR 58
prokMSA_id:12075 U48993 Streptosporangium longisporum IFO 13141
prokMSA_id:12078 X89948 Streptosporangium roseum DSM 43871
prokMSA_id:12079 X89956 Streptosporangium vulgare DSM 46133
prokMSA_id:12080 AF191734 Streptosporangium 7113 str. 7113
prokMSA_id:12081 X89957 Streptosporangium vulgare subsp. "antibioticum" DSM 44112
prokMSA_id:12082 X89949 Streptosporangium roseum subsp. "incarnatum" DSM 44111
prokMSA_id:12087 X89937 Streptosporangium "brasiliense" DSM 44109
prokMSA_id:12088 X89947 Streptosporangium roseum DSM 43021
prokMSA_id:12089 X89936 Streptosporangium amethystogenes DSM 46128
prokMSA_id:12090 X89943 Streptosporangium "koreanum" DSM 44110
prokMSA_id:12091 X89944 Streptosporangium longisporum DSM 43180
prokMSA_id:12092 X89955 Streptosporangium vulgare DSM 43802
prokMSA_id:12093 U48999 Streptosporangium vulgare IFO 13985
prokMSA_id:12095 AF191733 Streptosporangium 11007 str. 11007
2.30.1.8.3.4 STS.VIOLACEOCHROMOGENES_SUBGROUP 3 seqs
2.30.1.8.3.4.1238 OTU 1 seq
prokMSA_id:12098 X89952 Streptosporangium violaceochromogenes DSM 43872
2.30.1.8.3.4.28750 OTU 2 seqs
prokMSA_id:12097 U48997 Streptosporangium violaceochromogenes JCM 3281
prokMSA_id:12099 X89951 Streptosporangium violaceochromogenes DSM 43849
2.30.1.8.3.5 STS.CARNEUM_SUBGROUP 2 seqs
2.30.1.8.3.5.1753 OTU 1 seq
prokMSA_id:12100 X89938 Streptosporangium carneum DSM 44125
2.30.1.8.3.5.1754 OTU 1 seq
prokMSA_id:12101 AF191736 Streptosporangium 5866 str. 5866
2.30.1.8.3.6 PMS.PARONTOSPORA_SUBGROUP 6 seqs
2.30.1.8.3.6.1760 OTU 1 seq
prokMSA_id:12104 AB028655 Planomonospora venezuelensis JCM 3167
2.30.1.8.3.6.19031 OTU 1 seq
prokMSA_id:17513 AB062380 Clavisporangium rectum 
2.30.1.8.3.6.42508 OTU 4 seqs
prokMSA_id:12102 D85495 Planomonospora parontospora subsp. parontospora IFO 13880
prokMSA_id:12103 AB028653 Planomonospora parontospora subsp. antibiotica JCM 3094
prokMSA_id:46051 AB062382 Planomonospora sphaerica 
prokMSA_id:72045 D85495 Planomonospora parontospora strain IFO13880 
2.30.1.8.3.7 STS.VIRIDIALBUM_SUBGROUP 1 seq
2.30.1.8.3.7.1761 OTU 1 seq
prokMSA_id:12106 U48998 Streptosporangium viridialbum JCM 3027
2.30.1.8.3.8 PBS.LONGISPORA_SUBGROUP 3 seqs
2.30.1.8.3.8.16030 OTU 1 seq
prokMSA_id:45962 AB043101 Nonomuraea roseoviolacea 
2.30.1.8.3.8.30256 OTU 2 seqs
prokMSA_id:12108 D85494 Planobispora longispora IFO 13918
prokMSA_id:73964 D85494 Planobispora longispora strain IFO13918 
2.30.1.8.3.9 NM.SALMONEA_SUBGROUP 12 seqs
2.30.1.8.3.9.1789 OTU 1 seq
prokMSA_id:12119 U48845 Nonomuria ferruginea str. 487-2 IFO 14094
2.30.1.8.3.9.1810 OTU 1 seq
prokMSA_id:12121 U48844 Nonomuria fastidiosa IFO 14680
2.30.1.8.3.9.19612 OTU 1 seq
prokMSA_id:25422 AB039959 Nonomuraea roseoviolacea strain:IFO 14098T
2.30.1.8.3.9.2608 OTU 1 seq
prokMSA_id:73039 AF302078 Nonomuraea terranata 
2.30.1.8.3.9.37590 OTU 3 seqs
prokMSA_id:12117 AB018787 Nonomuraea longicatena NRRL 15532
prokMSA_id:18645 AB039961 Nonomuraea roseoviolacea strain:IFO 15903T
prokMSA_id:19369 AB039960 Nonomuraea roseoviolacea strain:SF 2303
2.30.1.8.3.9.41793 OTU 5 seqs
prokMSA_id:12115 X97892 Nonomuria salmonea DSM 43678
prokMSA_id:12116 AB006158 Cathayosporangium alboflavum IFO 16009
prokMSA_id:20028 AF223349 Pseudonocardiaceae str. PA83 complete 
prokMSA_id:47254 AY039254 Nonomuraea aurea 
prokMSA_id:74780 AF277197 Nonomuraea latina 
2.30.1.8.3.10 TMMS.CHROMOGENA_SUBGROUP 9 seqs
2.30.1.8.3.10.1817 OTU 1 seq
prokMSA_id:12128 AF116559 Thermomonospora chromogena ATCC 43196
2.30.1.8.3.10.2891 OTU 1 seq
prokMSA_id:34539 AY039253 Krassilnikovia flexuosa 
2.30.1.8.3.10.31888 OTU 7 seqs
prokMSA_id:12126 AF002261 Thermomonospora chromogena str. Agre 577 JCM 6244
prokMSA_id:12127 AF116558 Thermomonospora chromogena ATCC 43196
prokMSA_id:12129 AF116560 Thermomonospora chromogena ATCC 43196
prokMSA_id:12130 AF116561 Thermomonospora chromogena ATCC 43196
prokMSA_id:12131 AF116562 Thermomonospora chromogena ATCC 43196
prokMSA_id:12132 AF028246 Thermomonospora chromogena ATCC 43196
prokMSA_id:54694 AF116563 Thermomonospora chromogena strain ATCC43196 rrnF operon 23S 
2.30.1.8.3.11 STS.CORRUGATUM_SUBGROUP 1 seq
2.30.1.8.3.11.8544 OTU 1 seq
prokMSA_id:36455 AB006174 actinomycete strain:R-31 
2.30.1.8.3.99 VARIOUS 27 seqs
2.30.1.8.3.99.31910 OTU 27 seqs
prokMSA_id:12133 X70427 Streptosporangium corrugatum
prokMSA_id:12134 U48991 Streptosporangium corrugatum IFO 13972
prokMSA_id:12135 X89941 Streptosporangium corrugatum DSM 43316
prokMSA_id:12136 X89940 Streptosporangium claviforme DSM 44127
prokMSA_id:12137 D85485 Herbidospora cretacea str. K-319 IFO 15474
prokMSA_id:12138 U48973 Microtetraspora fusca IFO 13915
prokMSA_id:12139 U48976 Microtetraspora niveoalba IFO 15239
prokMSA_id:12140 U48974 Microtetraspora glauca IFO 14761
prokMSA_id:12141 X97891 Microtetraspora glauca DSM 43311
prokMSA_id:12142 D85490 Microtetraspora glauca IFO 14761
prokMSA_id:12143 D85496 Planotetraspora mira IFO 15435
prokMSA_id:12144 D86936 Microbispora rosea subsp. rosea IFO 14044
prokMSA_id:12145 U48985 Microbispora rosea subsp. rosea ATCC 33326
prokMSA_id:12146 AB018046 Microbispora corallina str. DF-32
prokMSA_id:12147 U48986 Microbispora rosea subsp. rosea ATCC 27098
prokMSA_id:12148 U48984 Microbispora rosea subsp. aerata ATCC 15448
prokMSA_id:12149 U48987 Microbispora rosea subsp. rosea ATCC 27099
prokMSA_id:12150 U48988 Microbispora rosea subsp. rosea JCM 3021
prokMSA_id:12151 AF002266 Microbispora mesophila str. T-1 JCM 3151
prokMSA_id:12152 U48989 Microbispora rosea subsp. rosea IFO 14876
prokMSA_id:12153 U48990 Microbispora rosea subsp. rosea IFO 14041
prokMSA_id:23223 AB062383 Microtetraspora malaysiensis strain:H47-7
prokMSA_id:30485 AF223347 Streptosporangiaceae str. PA147 complete 
prokMSA_id:31910 AB062385 Microtetraspora malaysiensis strain:Y25-12
prokMSA_id:49520 AB062384 Microtetraspora malaysiensis strain:Y1-5-3
prokMSA_id:67226 AF492842 Microbispora sp. V2 
prokMSA_id:69415 AB006175 actinomycete strain IFO16010 
2.30.1.9 ARTHROBACTER_SUBDIVISION 755 seqs
2.30.1.9.1 ARTHROBACTER_AND_RELATIVES 546 seqs
2.30.1.9.1.1 LEUCOBACTER_ASSEMBLAGE 29 seqs
2.30.1.9.1.1.10032 OTU 1 seq
prokMSA_id:67358 AJ438586 Leifsonia aureus strain CMS 81
2.30.1.9.1.1.16373 OTU 1 seq
prokMSA_id:69507 AF513393 Agreia sp. 37-4 
2.30.1.9.1.1.18290 OTU 1 seq
prokMSA_id:61927 AJ292036 actinobacterium d8 strain d8
2.30.1.9.1.1.18467 OTU 1 seq
prokMSA_id:61996 AJ244681 Corynebacterium cf. aquaticum V4.BO.26 marine isolate
2.30.1.9.1.1.1916 OTU 1 seq
prokMSA_id:12155 M87484 Tropheryma whippelii str. patient 1
2.30.1.9.1.1.1933 OTU 1 seq
prokMSA_id:12160 AF050573 clone WCHB1-08
2.30.1.9.1.1.1937 OTU 1 seq
prokMSA_id:12163 D45063 Leucobacter komagatae
2.30.1.9.1.1.1940 OTU 1 seq
prokMSA_id:12165 D17751 Leucobacter komagatae
2.30.1.9.1.1.1942 OTU 1 seq
prokMSA_id:12167 X92492 Agrococcus jenensis DSM 9580
2.30.1.9.1.1.1943 OTU 1 seq
prokMSA_id:12168 AF170739 Agrococcus QSSC2-2 str. QSSC2-2
2.30.1.9.1.1.29249 OTU 2 seqs
prokMSA_id:45333 Y14595 Nostocoida limicola II strain Ver1
prokMSA_id:49131 Y14596 Nostocoida limicola II strain Ver2
2.30.1.9.1.1.33125 OTU 4 seqs
prokMSA_id:12157 X77450 Corynebacterium "aquaticum" DSM 20146
prokMSA_id:12159 M60935 Clavibacter xyli subsp. cynodontis str. Cxc
prokMSA_id:73704 AJ244675 Leifsonia sp. V4.MO.14 marine isolate
prokMSA_id:74625 AB028941 Microbacteriaceae str. DB103 
2.30.1.9.1.1.34432 OTU 2 seqs
prokMSA_id:12164 AB012594 unnamed organism
prokMSA_id:42597 AB007419 Leucobacter komagatae 
2.30.1.9.1.1.34925 OTU 4 seqs
prokMSA_id:56556 AF539697 Marine KMM3673 
prokMSA_id:60321 AF539698 Marine KMM3670 
prokMSA_id:60322 AF539699 Marine KMM3928 
prokMSA_id:72839 AJ244680 Clavibacter-like sp. V4.BE.53 marine isolate
2.30.1.9.1.1.40654 OTU 5 seqs
prokMSA_id:12158 D45057 Corynebacterium "aquaticum" JCM 1368
prokMSA_id:12162 U96183 Clavibacter xyli subsp. xyli str. F1A
prokMSA_id:49214 AB028940 Microbacteriaceae str. DB102 
prokMSA_id:73757 AF531474 Naphthalene-utilizing IS1 
prokMSA_id:78023 AB074617 actinobacterium clone:APe2_47
2.30.1.9.1.1.42687 OTU 2 seqs
prokMSA_id:66699 AJ459101 Rhodoglobus vestali strain LV3
prokMSA_id:67357 AJ438585 Leifsonia rubeus strain CMS 76r
2.30.1.9.1.2 AGROMYCES_SUBGROUP 16 seqs
2.30.1.9.1.2.13918 OTU 1 seq
prokMSA_id:30568 AF389342 Agromyces bannaensis 
2.30.1.9.1.2.14774 OTU 1 seq
prokMSA_id:38522 AF224722 Subtercola boreus 
2.30.1.9.1.2.1954 OTU 1 seq
prokMSA_id:12173 D45061 Agromyces fucosus subsp. hippuratus JCM 9086
2.30.1.9.1.2.1953 OTU 1 seq
prokMSA_id:12172 D45055 Agromyces succinolyticus str. CNF 201
2.30.1.9.1.2.1956 OTU 1 seq
prokMSA_id:12174 X77447 Agromyces ramosus DSM 43045
2.30.1.9.1.2.1960 OTU 1 seq
prokMSA_id:12177 X77448 Agromyces cerinus subsp. cerinus DSM 8595
2.30.1.9.1.2.1961 OTU 1 seq
prokMSA_id:12178 D45060 Agromyces cerinus subsp. cerinus JCM 9083
2.30.1.9.1.2.1982 OTU 1 seq
prokMSA_id:12181 AB023359 Agromyces IFO16238 IFO 16238
2.30.1.9.1.2.1980 OTU 1 seq
prokMSA_id:12180 AB023356 Agromyces IFO16235 IFO 16235
2.30.1.9.1.2.21822 OTU 1 seq
prokMSA_id:70824 AF423078 Actinobacterium '#33 yellow' 
2.30.1.9.1.2.30533 OTU 4 seqs
prokMSA_id:12179 X77449 Agromyces mediolanus DSM 20152
prokMSA_id:12183 D45052 Agromyces mediolanus JCM 1376
prokMSA_id:12184 D45054 Agromyces mediolanus str. CNF 186; K. Aoki AN-15 JCM 9632
prokMSA_id:12185 D45056 Agromyces mediolanus str. CNF 208 JCM 9633
2.30.1.9.1.2.32318 OTU 2 seqs
prokMSA_id:12175 AB023357 Agromyces IFO16237 IFO 16236
prokMSA_id:12176 AB023358 Agromyces IFO16237 IFO 16237
2.30.1.9.1.3 MICROBACTERIUM_SUBGROUP 35 seqs
2.30.1.9.1.3.1 MBM.BARKERI 2 seqs
2.30.1.9.1.3.1.19566 OTU 1 seq
prokMSA_id:33272 AF263565 Microbacterium gubbeenense strain DPC 5284 
2.30.1.9.1.3.1.1988 OTU 1 seq
prokMSA_id:12187 X77446 Microbacterium barkeri DSM 20145
2.30.1.9.1.3.2 MBM.ESTERAROMATICUM_SUBGROUP 3 seqs
2.30.1.9.1.3.2.1856 OTU 1 seq
prokMSA_id:80180 AF468437 Arctic sea ice ARK10030 
2.30.1.9.1.3.2.33337 OTU 2 seqs
prokMSA_id:12190 Y17231 Microbacterium esteraromaticum DSM 8609
prokMSA_id:65230 AB070467 Microbacterium sp. YK18 
2.30.1.9.1.3.3 MBM.ARABINOGALACTANOLYTICUM_SUBGROUP 2 seqs
2.30.1.9.1.3.3.18507 OTU 1 seq
prokMSA_id:77657 AB089079 Actinobacteridae clone:Rs-F20
2.30.1.9.1.3.3.2004 OTU 1 seq
prokMSA_id:12193 AF154098 clone BPC090
2.30.1.9.1.3.4 MBM.KERATANOLYTICUM_SUBGROUP 2 seqs
2.30.1.9.1.3.4.15488 OTU 1 seq
prokMSA_id:68742 AF479358 Glacial ice SB12K-2-1 
2.30.1.9.1.3.4.2007 OTU 1 seq
prokMSA_id:12195 X62913 str. UW 103/A31
2.30.1.9.1.3.5 MBM.IMPERIALE_SUBGROUP 14 seqs
2.30.1.9.1.3.5.13646 OTU 1 seq
prokMSA_id:44928 AF390085 Microbacterium sp. Pla-1 
2.30.1.9.1.3.5.16127 OTU 1 seq
prokMSA_id:62238 AY124341 CS117 
2.30.1.9.1.3.5.17129 OTU 1 seq
prokMSA_id:39537 AB042081 Microbacterium sp. VKM Ac-2016 
2.30.1.9.1.3.5.2374 OTU 1 seq
prokMSA_id:49537 AJ297438 Cryobacterium aff. psychrophilum A1/C-aer/OI 
2.30.1.9.1.3.5.2621 OTU 1 seq
prokMSA_id:12211 X77441 Microbacterium lacticum DSM 20427
2.30.1.9.1.3.5.2648 OTU 1 seq
prokMSA_id:12224 AB007417 Microbacterium dextranolyticum
2.30.1.9.1.3.5.2671 OTU 1 seq
prokMSA_id:12231 AB002637 str. HTA064
2.30.1.9.1.3.5.2694 OTU 1 seq
prokMSA_id:12246 D21340 Microbacterium aurum IFO 15204
2.30.1.9.1.3.5.2699 OTU 1 seq
prokMSA_id:12247 D21341 Microbacterium dextranolyticum str. M-73 IFO 14592
2.30.1.9.1.3.5.30641 OTU 2 seqs
prokMSA_id:12237 D21342 Microbacterium imperiale IFO 12610
prokMSA_id:12248 D21339 Microbacterium arborescens IFO 3750
2.30.1.9.1.3.5.31564 OTU 2 seqs
prokMSA_id:26311 AJ318159 Actinobacterium clone BIlii24b
prokMSA_id:40018 AJ318158 Actinobacterium clone BIlii24
2.30.1.9.1.3.5.9693 OTU 1 seq
prokMSA_id:21520 AJ318140 Actinobacterium clone BIhi33
2.30.1.9.1.3.6 MBM.THALASSIUM_SUBGROUP 10 seqs
2.30.1.9.1.3.6.15557 OTU 1 seq
prokMSA_id:68771 AF479329 Glacial ice G500K-10 
2.30.1.9.1.3.6.16187 OTU 1 seq
prokMSA_id:47210 AB042090 Curtobacterium sp. VKM Ac-2052 
2.30.1.9.1.3.6.18470 OTU 1 seq
prokMSA_id:61998 AJ244677 Microbacterium sp. V4.BP.11 marine isolate
2.30.1.9.1.3.6.20392 OTU 1 seq
prokMSA_id:33383 AF388031 Microbacterium sp. 46 
2.30.1.9.1.3.6.2715 OTU 1 seq
prokMSA_id:12254 AB004713 Microbacterium thalassium IFO 16060
2.30.1.9.1.3.6.31616 OTU 3 seqs
prokMSA_id:18263 AB042094 Curtobacterium sp. VKM Ac-2059 
prokMSA_id:41086 AB042097 Curtobacterium sp. VKM Ac-2062 
prokMSA_id:41897 AF306834 Microbacterium sp. VA8728_00 
2.30.1.9.1.3.6.34588 OTU 2 seqs
prokMSA_id:12256 AB023369 Microbacterium IFO16248 IFO 16248
prokMSA_id:12257 AB023370 Microbacterium IFO16249 IFO 16249
2.30.1.9.1.3.99 VARIOUS 2 seqs
2.30.1.9.1.3.99.42821 OTU 2 seqs
prokMSA_id:18883 AB042096 Curtobacterium sp. VKM Ac-2061 
prokMSA_id:59548 AF538744 CAGY3 strain CAGY-3 
2.30.1.9.1.4 CLAVIBACTER_SUBGROUP 94 seqs
2.30.1.9.1.4.1 CLV.MICHIGANENSE_SUBGROUP 25 seqs
2.30.1.9.1.4.1.15755 OTU 1 seq
prokMSA_id:16443 AJ289982 FukuN101 
2.30.1.9.1.4.1.32109 OTU 3 seqs
prokMSA_id:37764 AF157478 Frigoribacterium sp. 227 
prokMSA_id:43521 AF157479 Frigoribacterium sp. 301 
prokMSA_id:45654 Y18807 Frigoribacter sp. 801 
2.30.1.9.1.4.1.33921 OTU 16 seqs
prokMSA_id:12260 X77435 Clavibacter michiganense subsp. michiganense DSM 46364
prokMSA_id:12261 D84128 Clavibacter michiganensis subsp. michiganensis str. JCM 1370
prokMSA_id:12263 X77434 Clavibacter michiganense subsp. nebraskense DSM 7483
prokMSA_id:12265 U09763 Clavibacter michiganense subsp. nebraskense LMG 5627
prokMSA_id:12266 U09761 Clavibacter michiganense subsp. insidiosum LMG 3663
prokMSA_id:12268 U09762 Clavibacter michiganense subsp. michiganense LMG 7333
prokMSA_id:12269 D45059 Clavibacter michiganense subsp. michiganense JCM 3345
prokMSA_id:12270 U09764 Clavibacter michiganense subsp. sepedonicum LMG 2889
prokMSA_id:12272 L43096 Clavibacter michiganense
prokMSA_id:12273 U30254 Clavibacter michiganense
prokMSA_id:19936 AJ310416 Clavibacter michiganensis strain P 250/01
prokMSA_id:39549 AJ310415 Clavibacter michiganensis strain P 202/10
prokMSA_id:45123 AB042095 Curtobacterium sp. VKM Ac-2060 
prokMSA_id:66587 AF474328 Clavibacter michiganensis 
prokMSA_id:70525 L43096 Clavibacter michiganensis complete 
prokMSA_id:73009 AF479348 Glacial ice G50-PD1 
2.30.1.9.1.4.1.39195 OTU 2 seqs
prokMSA_id:79704 AF468442 Arctic sea ice ARK10190 
prokMSA_id:79897 AF468441 Arctic sea ice ARK10186 
2.30.1.9.1.4.1.42951 OTU 2 seqs
prokMSA_id:12262 U96181 Clavibacter michiganense subsp. tessellarius ATCC 33566
prokMSA_id:12271 U96182 Clavibacter michiganensis subsp. nebraskensis ATCC 27822
2.30.1.9.1.4.1.6765 OTU 1 seq
prokMSA_id:80750 AF468439 Arctic sea ice ARK10165 
2.30.1.9.1.4.2 RTB.RATHAYI_SUBGROUP 30 seqs
2.30.1.9.1.4.2.12397 OTU 1 seq
prokMSA_id:59851 AJ507468 Actinobacterium MWH-Ta3 
2.30.1.9.1.4.2.14134 OTU 1 seq
prokMSA_id:46295 AJ297441 Frigoribacterium aff. faeni A-1/C-an/E 
2.30.1.9.1.4.2.15527 OTU 1 seq
prokMSA_id:68759 AF479342 Glacial ice G200-C11 
2.30.1.9.1.4.2.2770 OTU 1 seq
prokMSA_id:12280 AB008510 str. 12-8
2.30.1.9.1.4.2.2784 OTU 1 seq
prokMSA_id:12287 D45062 Rathayibacter rathayi JCM 9307
2.30.1.9.1.4.2.2785 OTU 1 seq
prokMSA_id:12288 X77439 Rathayibacter rathayi DSM 7485
2.30.1.9.1.4.2.29767 OTU 2 seqs
prokMSA_id:12285 AF170755 str. QSSC9-20
prokMSA_id:25558 AF050574 WCHB1-18 
2.30.1.9.1.4.2.30758 OTU 5 seqs
prokMSA_id:12281 AB012646 Detolaasinbacter tsukamotoae str. CM-05
prokMSA_id:12282 AB012647 Detolaasinbacter shiratae str. CM-01
prokMSA_id:12283 AB012648 Detolaasinbacter muratae str. CM-10
prokMSA_id:12284 AB020204 Detolaasinbacter OM-A1 str. OM-A1
prokMSA_id:45224 AB074152 Mycetocola tolaasinivorans 
2.30.1.9.1.4.2.33264 OTU 9 seqs
prokMSA_id:62712 AF507846 actinobacterium clone ML602J-51 
prokMSA_id:79487 AF447768 actinobacterium ML320J-19 
prokMSA_id:79920 AF445364 actinobacterium ML110J-7 
prokMSA_id:80013 AF448168 actinobacterium clone ML110J-11 
prokMSA_id:80234 AF448170 actinobacterium clone ML110M-5 
prokMSA_id:80358 AF448177 actinobacterium clone ML320J-32 
prokMSA_id:80474 AF448171 actinobacterium clone ML1218M-10 
prokMSA_id:81025 AF448180 actinobacterium clone ML602M-15 
prokMSA_id:82444 AF486490 actinobacterium ML602J-51 
2.30.1.9.1.4.2.33678 OTU 4 seqs
prokMSA_id:12278 X77438 Rathayibacter tritici DSM 7486
prokMSA_id:12279 U96185 Rathayibacter tritici ATCC 11402
prokMSA_id:21685 AF159364 Rathayibacter carexis 
prokMSA_id:77324 AY167853 Rathayibacter tritici strain SAFR-009 
2.30.1.9.1.4.2.39702 OTU 3 seqs
prokMSA_id:80323 AF468272 clone ARKCH4-90 
prokMSA_id:80677 AF468440 Arctic sea ice ARK10173 
prokMSA_id:80754 AF468262 clone ARKDMS-27 
2.30.1.9.1.4.2.5875 OTU 1 seq
prokMSA_id:50557 AF224723 Subtercola frigoramans 
2.30.1.9.1.4.3 CUB.CITREUM_SUBGROUP 11 seqs
2.30.1.9.1.4.3.14438 OTU 1 seq
prokMSA_id:23409 AF300651 Corynebacterium bovis 
2.30.1.9.1.4.3.16418 OTU 1 seq
prokMSA_id:39437 AF251035 Tropheryma whippelii 
2.30.1.9.1.4.3.2805 OTU 1 seq
prokMSA_id:12290 X77440 Brevibacterium "helvolum" DSM 20419
2.30.1.9.1.4.3.2813 OTU 1 seq
prokMSA_id:12293 AB012591 IFO 15706
2.30.1.9.1.4.3.29966 OTU 4 seqs
prokMSA_id:12291 AB012589 IFO 15614
prokMSA_id:12294 AB012592 IFO 15777
prokMSA_id:12296 AB012595 unnamed organism
prokMSA_id:21404 AJ251780 Brevibacterium equis 
2.30.1.9.1.4.3.30805 OTU 2 seqs
prokMSA_id:12292 AB012590 IFO 15616
prokMSA_id:12295 AB012593 IFO 15702
2.30.1.9.1.4.3.5179 OTU 1 seq
prokMSA_id:73379 AJ306835 actinomycete isolate ON4
2.30.1.9.1.4.99 VARIOUS 28 seqs
2.30.1.9.1.4.99.34493 OTU 20 seqs
prokMSA_id:12298 X77437 Curtobacterium luteum DSM 20542
prokMSA_id:12299 X77436 Curtobacterium citreum DSM 20528
prokMSA_id:17229 AB046363 Curtobacterium albidum 
prokMSA_id:23865 AF348974 Curtobacterium flaccumfaciens pv. betae 
prokMSA_id:24970 AF348972 Curtobacterium flaccumfaciens pv. flaccumfaciens strain 558 
prokMSA_id:27058 AF348975 Curtobacterium flaccumfaciens pv. oorti 
prokMSA_id:27533 AB042091 Curtobacterium sp. VKM Ac-2056 
prokMSA_id:27682 AF348973 Curtobacterium flaccumfaciens pv. flaccumfaciens strain 2584
prokMSA_id:30962 AB042089 Curtobacterium sp. VKM Ac-1811 
prokMSA_id:33904 AF348976 Curtobacterium flaccumfaciens pv. poinsettiae 
prokMSA_id:35312 AB042086 Curtobacterium sp. VKM Ac-1376 
prokMSA_id:35440 AJ310413 Curtobacterium herbarum strain DSM 14013T
prokMSA_id:41734 AJ310414 Curtobacterium flaccumfaciens strain P 259/26
prokMSA_id:51851 AB042087 Curtobacterium sp. VKM Ac-1387 
prokMSA_id:51971 AJ312209 Curtobacterium flaccumfaciens pv. flaccumfaciens strain LMG3
prokMSA_id:59541 AF538747 CAGY8 strain CAGY8 
prokMSA_id:66584 AF474329 Curtobacterium sp. SG041 
prokMSA_id:71860 AB046364 Curtobacterium sp. IFO 12674T 
prokMSA_id:74824 AB042088 Curtobacterium sp. VKM Ac-1809 
prokMSA_id:77377 AY167854 Curtobacterium flaccumfaciens strain SAFR-008 
2.30.1.9.1.4.99.42098 OTU 8 seqs
prokMSA_id:56496 AJ507461 Actinobacterium MWH-Mo2 
prokMSA_id:59525 AJ507462 Actinobacterium MWH-Mo3 
prokMSA_id:59852 AJ507463 Actinobacterium MWH-Po1 
prokMSA_id:59853 AJ507460 Actinobacterium MWH-Mo1 
prokMSA_id:59854 AJ507466 Actinobacterium MWH-Ta1 
prokMSA_id:59855 AJ507465 Actinobacterium MWH-Bo1 
prokMSA_id:59856 AJ507464 Actinobacterium MWH-Wo1 
prokMSA_id:59857 AJ507467 Actinobacterium MWH-Ta2 
2.30.1.9.1.5 CELLULOMONAS_SUBGROUP 86 seqs
2.30.1.9.1.5.1 CLLM.FLAVIGENA_SUBGROUP 30 seqs
2.30.1.9.1.5.1.10215 OTU 1 seq
prokMSA_id:73976 X94155 Georgenia muralis strain 1A-C
2.30.1.9.1.5.1.10579 OTU 1 seq
prokMSA_id:81808 AY218605 clone KD3-138 
2.30.1.9.1.5.1.14810 OTU 1 seq
prokMSA_id:38534 AB078841 Actinobacterium WB2 
2.30.1.9.1.5.1.15462 OTU 1 seq
prokMSA_id:68735 AF479365 Glacial ice SB12K-6-2 
2.30.1.9.1.5.1.16128 OTU 1 seq
prokMSA_id:32157 AB078836 Cellulomonadaceae str. W2 
2.30.1.9.1.5.1.16313 OTU 1 seq
prokMSA_id:46611 X92152 sp. Lake Bogoria isolate 69B4
2.30.1.9.1.5.1.1650 OTU 1 seq
prokMSA_id:80107 AF468234 clone ARKCH2Br2-52 
2.30.1.9.1.5.1.18642 OTU 1 seq
prokMSA_id:71022 AB056129 Rarobacter incanus 
2.30.1.9.1.5.1.19014 OTU 1 seq
prokMSA_id:17507 AB062830 clone:BCf6-05
2.30.1.9.1.5.1.21759 OTU 1 seq
prokMSA_id:40713 AF287753 Dermabacter sp. oral strain B46KS 
2.30.1.9.1.5.1.3362 OTU 1 seq
prokMSA_id:12346 AJ229245 str. VeCb6
2.30.1.9.1.5.1.35450 OTU 3 seqs
prokMSA_id:12325 AB023367 Cellulomonas sp. IFO16246 
prokMSA_id:12355 AB023362 Cellulomonas sp. IFO16241 
prokMSA_id:12357 AB023361 Cellulomonas sp. IFO16240 
2.30.1.9.1.5.1.35497 OTU 7 seqs
prokMSA_id:12328 X83806 Cellulomonas turbata
prokMSA_id:12339 X83807 Promicromonospora enterophila
prokMSA_id:12340 X79454 Cellulomonas turbata NCIMB 10587
prokMSA_id:24025 AF237956 Cellulomonas sp. UFZ-B529 
prokMSA_id:24741 AJ314848 Oerskovia jenensis strain DSM 46000
prokMSA_id:32173 AJ314851 Oerskovia paurometabola strain DSM 14281
prokMSA_id:54867 AJ314849 Oerskovia jenensis strain DSM 46001
2.30.1.9.1.5.1.40369 OTU 2 seqs
prokMSA_id:26352 Y18378 Beutenbergia cavernosa 
prokMSA_id:44206 AJ400627 Salana multivorans strain Se-3111
2.30.1.9.1.5.1.41665 OTU 2 seqs
prokMSA_id:25310 AB078818 Cellulomonadaceae str. K3 
prokMSA_id:39459 AB078838 Cellulomonadaceae str. W6 
2.30.1.9.1.5.1.42948 OTU 4 seqs
prokMSA_id:12324 X82598 Cellulomonas hominis str. DMMZ CE40 CDC group A-3 DSM 9581
prokMSA_id:12326 Y09658 Cellulomonas sp. str. 1533
prokMSA_id:12327 Y09659 Cellulomonas sp. str. 1781
prokMSA_id:12333 X82449 Actinomyces humiferus NCTC 25174
2.30.1.9.1.5.1.8335 OTU 1 seq
prokMSA_id:43619 AB078849 Cellulomonadaceae str. WB11 
2.30.1.9.1.5.3 SGB.INULINUS_SUBGROUP 9 seqs
2.30.1.9.1.5.3.18610 OTU 1 seq
prokMSA_id:77691 AB089082 Actinobacteridae clone:Rs-Q71
2.30.1.9.1.5.3.19294 OTU 1 seq
prokMSA_id:77790 AB089076 Actinobacteridae clone:Rs-M95
2.30.1.9.1.5.3.30605 OTU 2 seqs
prokMSA_id:23427 AJ289996 FukuN30 
prokMSA_id:45942 AJ290024 GKS2-103 
2.30.1.9.1.5.3.30730 OTU 3 seqs
prokMSA_id:12356 X79451 Sanguibacter inulinus str. ST-50 NCFB 3024
prokMSA_id:12361 X79450 Sanguibacter keddieii str. ST-74 ATCC 51767
prokMSA_id:38749 AF371710 clone p-3370-23G2 
2.30.1.9.1.5.3.3380 OTU 1 seq
prokMSA_id:12354 U85190 clone ACK-M1
2.30.1.9.1.5.3.3389 OTU 1 seq
prokMSA_id:12359 AJ240976 clone Sva0389
2.30.1.9.1.5.4 TRB.TUMESCENS_SUBGROUP 47 seqs
2.30.1.9.1.5.4.11545 OTU 1 seq
prokMSA_id:37445 AF387314 actinobacterium clone GCP69 
2.30.1.9.1.5.4.12532 OTU 1 seq
prokMSA_id:22538 AF109793 High G+C Gram-positive lpha7 
2.30.1.9.1.5.4.1413 OTU 1 seq
prokMSA_id:40964 AF125092 Tetrasphaera japonica strain T1-X7 
2.30.1.9.1.5.4.16495 OTU 1 seq
prokMSA_id:40007 AF109792 High G+C Gram-positive lpha5 
2.30.1.9.1.5.4.17098 OTU 1 seq
prokMSA_id:77483 AY167851 Knoellia sinensis strain SAFR-013 
2.30.1.9.1.5.4.17601 OTU 1 seq
prokMSA_id:78162 AB098588 Ornithinicoccus sp. TUT1020 
2.30.1.9.1.5.4.18437 OTU 1 seq
prokMSA_id:61983 AJ244674 Janibacter like sp. V4.BO.43 marine isolate
2.30.1.9.1.5.4.20762 OTU 1 seq
prokMSA_id:24962 AF255628 clone Ebpr20 
2.30.1.9.1.5.4.2774 OTU 1 seq
prokMSA_id:65235 AB070463 Terrabacter sp. YK11 
2.30.1.9.1.5.4.29441 OTU 6 seqs
prokMSA_id:12371 AB030911 str. Lp2
prokMSA_id:25117 AF387307 actinobacterium clone SBRA22 
prokMSA_id:32048 AF387313 actinobacterium clone GCP18 
prokMSA_id:46307 AB051430 Tetrasphaera elongata strain:ASP12
prokMSA_id:50153 AF387312 actinobacterium clone GCP1 
prokMSA_id:59353 AF502213 clone HP1B09 
2.30.1.9.1.5.4.30782 OTU 2 seqs
prokMSA_id:12372 X83812 Terrabacter tumescens
prokMSA_id:24661 AF005023 Terrabacter tumescens 
2.30.1.9.1.5.4.32278 OTU 2 seqs
prokMSA_id:49745 AJ277650 Ornithinimicrobium humiphilum strain DSM 12362
prokMSA_id:50307 AF423286 soil clone 672-2 
2.30.1.9.1.5.4.3414 OTU 1 seq
prokMSA_id:12364 Y11928 Terracoccus luteus DSM 44267
2.30.1.9.1.5.4.3419 OTU 1 seq
prokMSA_id:12369 AF170746 Janibacter QSSC8-6 str. QSSC8-6
2.30.1.9.1.5.4.39466 OTU 9 seqs
prokMSA_id:12365 Y08539 Janibacter limosus str. 2003-10 DSM 11140
prokMSA_id:12366 U96645 Terrabacter DDE-1 str. DDE-1
prokMSA_id:12370 Y08540 Janibacter thuringensis DSM 11141
prokMSA_id:31576 AB016439 Janibacter brevis strain:16N
prokMSA_id:42562 AB016438 Janibacter brevis strain:10N
prokMSA_id:61984 AJ244673 Janibacter like sp. V4.BE.21 
prokMSA_id:65233 AB070465 Terrabacter sp. YK14 
prokMSA_id:65241 AB070460 Terrabacter sp. YK7 
prokMSA_id:65242 AB070459 Terrabacter sp. YK3 
2.30.1.9.1.5.4.40360 OTU 2 seqs
prokMSA_id:21333 AJ294412 Knoellia sinensis strain DSM 12331
prokMSA_id:49344 AJ294413 Knoellia subterranea strain HKI 0120
2.30.1.9.1.5.4.41686 OTU 7 seqs
prokMSA_id:36954 AF176948 Janibacter terrae 
prokMSA_id:55617 AB070457 Terrabacter sp. YK1 
prokMSA_id:65231 AB070468 Terrabacter sp. YK21 
prokMSA_id:65232 AB070466 Terrabacter sp. YK16 
prokMSA_id:65234 AB070464 Terrabacter sp. YK13 
prokMSA_id:65236 AB070462 Terrabacter sp. YK10 
prokMSA_id:75998 AB089480 Janibacter sp. YY-1 
2.30.1.9.1.5.4.41776 OTU 5 seqs
prokMSA_id:18874 AF125090 Tetrasphaera australiensis strain 110 
prokMSA_id:21157 AF125091 Tetrasphaera australiensis strain 109 
prokMSA_id:26805 Y14597 Nostocoida limicola II strain Ben67
prokMSA_id:29284 X85212 Nostocoida limicola II Ben18 strain
prokMSA_id:43992 X85211 Nostocoida limicola II Ben17 strain
2.30.1.9.1.5.4.4395 OTU 1 seq
prokMSA_id:65431 AF513091 clone 17 
2.30.1.9.1.5.4.756 OTU 1 seq
prokMSA_id:56542 AF513087 clone 14 
2.30.1.9.1.5.4.7955 OTU 1 seq
prokMSA_id:58688 AB072496 Lochheadia duodecas 
2.30.1.9.1.6 ARTHROBACTER_SUBGROUP 182 seqs
2.30.1.9.1.6.1 ARB.GLOBIFORMIS_SUBGROUP 21 seqs
2.30.1.9.1.6.1.12430 OTU 1 seq
prokMSA_id:59890 AY133106 actinobacterium clone ccspost2208 
2.30.1.9.1.6.1.1442 OTU 1 seq
prokMSA_id:56625 AY102314 clone a13107 
2.30.1.9.1.6.1.1764 OTU 1 seq
prokMSA_id:48874 AJ298940 Micrococcus lylae strain d10
2.30.1.9.1.6.1.30836 OTU 2 seqs
prokMSA_id:16396 AJ278869 Arthrobacter roseus strain CMS92
prokMSA_id:40881 AJ278870 Arthrobacter roseus strain CMS90
2.30.1.9.1.6.1.32462 OTU 4 seqs
prokMSA_id:12394 AF099202 Arthrobacter 'RSX II' str. RSX II
prokMSA_id:44320 AB017541 Arthrobacter sp. R-II-1 
prokMSA_id:49703 AB017539 Arthrobacter sp. H-I-2 
prokMSA_id:59471 AB071950 Arthrobacter russicus 
2.30.1.9.1.6.1.3503 OTU 1 seq
prokMSA_id:12396 AJ009463 clone SJA-43
2.30.1.9.1.6.1.3504 OTU 1 seq
prokMSA_id:12398 AB024412 Arthrobacter SN16A str. SN16A
2.30.1.9.1.6.1.3506 OTU 1 seq
prokMSA_id:12399 X93353 Arthrobacter sp. str. 1551
2.30.1.9.1.6.1.40549 OTU 2 seqs
prokMSA_id:78533 AJ428402 Varibaculum cambriensis strain CCUG 44998
prokMSA_id:80455 AJ491326 Varibaculum cambriensis strain CCUG 44998T
2.30.1.9.1.6.1.4113 OTU 1 seq
prokMSA_id:12400 X93354 Arthrobacter sp. str. 445
2.30.1.9.1.6.1.4151 OTU 1 seq
prokMSA_id:12415 X86595 Arthrobacter sp. str. AC-51
2.30.1.9.1.6.1.42756 OTU 2 seqs
prokMSA_id:75585 AJ535636 Arthrobacter sp. SB28 strain SB28
prokMSA_id:76404 AJ535637 Arthrobacter sp. SB30 strain SB30
2.30.1.9.1.6.1.4451 OTU 1 seq
prokMSA_id:28143 AF180950 Renibacterium salmoninarum complete 
2.30.1.9.1.6.1.4835 OTU 1 seq
prokMSA_id:49877 AF441731 Arthrobacter sp. Kaza-36 
2.30.1.9.1.6.1.6983 OTU 1 seq
prokMSA_id:72934 AJ344143 Citrococcus muralis strain 4-0
2.30.1.9.1.6.2 ARB.AGILIS_SUBGROUP 20 seqs
2.30.1.9.1.6.2.14961 OTU 1 seq
prokMSA_id:68681 AJ292364 Arthrobacter nasiphocae strain M597/99/10
2.30.1.9.1.6.2.15499 OTU 1 seq
prokMSA_id:68747 AF479354 Glacial ice G50-TB7 
2.30.1.9.1.6.2.20043 OTU 1 seq
prokMSA_id:77874 AB089072 Actinobacteridae clone:Rs-N91
2.30.1.9.1.6.2.2862 OTU 1 seq
prokMSA_id:72484 AJ298578 Hb7-K5 
2.30.1.9.1.6.2.3630 OTU 1 seq
prokMSA_id:65387 AF511518 Arthrobacter agilis 
2.30.1.9.1.6.2.40156 OTU 9 seqs
prokMSA_id:12443 X80744 Arthrobacter ureafaciens str. NC DSM 20126
prokMSA_id:12444 X80743 Arthrobacter nicotinovorans DSM 420
prokMSA_id:12445 U85897 Arthrobacter sp. str. MB6-07
prokMSA_id:12446 AB017649 Arthrobacter sp. str. 19B
prokMSA_id:12448 AB017354 Arthrobacter sp. str. RC100
prokMSA_id:12449 X83406 Arthrobacter histidinolovorans DSM 20115
prokMSA_id:12451 X83407 Arthrobacter ilicis DSM 20138
prokMSA_id:41769 AF256196 Arthrobacter keyseri 12B 
prokMSA_id:60994 AF531476 Naphthalene-utilizing IS5 
2.30.1.9.1.6.2.4226 OTU 1 seq
prokMSA_id:12434 U85895 Arthrobacter sp. str. IC044
2.30.1.9.1.6.2.42459 OTU 2 seqs
prokMSA_id:63457 AY116497 Arthrobacter koreensis strain CA15-9 
prokMSA_id:63458 AY116496 Arthrobacter koreensis strain CA15-8 
2.30.1.9.1.6.2.4270 OTU 1 seq
prokMSA_id:12447 AJ243421 Arthrobacter CF-43 str. CF-43
2.30.1.9.1.6.2.598 OTU 1 seq
prokMSA_id:64361 AJ491107 Arthrobacter gandensis strain R5814
2.30.1.9.1.6.2.8148 OTU 1 seq
prokMSA_id:44226 AY053487 AT425_EubD11 
2.30.1.9.1.6.3 ARB.SULFUREUS_SUBGROUP 40 seqs
2.30.1.9.1.6.3.1155 OTU 1 seq
prokMSA_id:42157 AF194538 Methylomicrobium sp. 6G 
2.30.1.9.1.6.3.13702 OTU 1 seq
prokMSA_id:44949 AJ307945 mRNA clone sipK5
2.30.1.9.1.6.3.14473 OTU 1 seq
prokMSA_id:54177 AF200218 Psychrophilic marine PS32 complete and -23S intergenic space
2.30.1.9.1.6.3.16762 OTU 1 seq
prokMSA_id:25056 AF336357 Arthrobacter sp. Wuba49 
2.30.1.9.1.6.3.18530 OTU 1 seq
prokMSA_id:77664 AB098572 Arthrobacter sp. TUT1004 
2.30.1.9.1.6.3.19576 OTU 1 seq
prokMSA_id:79015 AB094464 Citricoccus sp. 2216.25.22 
2.30.1.9.1.6.3.20405 OTU 1 seq
prokMSA_id:63471 AJ495808 Arthrobacter sp. p20G 
2.30.1.9.1.6.3.20835 OTU 1 seq
prokMSA_id:77943 AB089080 Actinobacteridae clone:Rs-M66
2.30.1.9.1.6.3.21582 OTU 1 seq
prokMSA_id:17863 AJ251417 Brevibacterium liquefaciens strain DSM 20579
2.30.1.9.1.6.3.35233 OTU 16 seqs
prokMSA_id:12464 AF105024 Micrococcus DD75 str. DD75
prokMSA_id:12465 Y15857 unnamed organism
prokMSA_id:12466 AF057289 Micrococcus luteus str. HN2-11
prokMSA_id:12467 AB023371 Micrococcus luteus IFO 16250
prokMSA_id:12468 X86608 Micrococcus sp. str. 1F-15
prokMSA_id:12469 X86609 Micrococcus sp. str. AC-47
prokMSA_id:12483 AF057290 Micrococcus lylae str. W1IMSNU 50712
prokMSA_id:22419 AF218240 Micrococcus sp
prokMSA_id:29883 AJ313024 Micrococcus sp. MN 8.1d.1c isolate MN 8.1d.1c
prokMSA_id:42163 AJ296288 Micrococcus sp. 667-16 
prokMSA_id:42695 AJ295375 Rape rhizosphere cse077 
prokMSA_id:49962 AJ005932 Micrococcus psychrophilum mRNA 
prokMSA_id:60437 AY135693 Saccharothrix sp. AS 4.1731 
prokMSA_id:68736 AF479368 Glacial ice SB19K-1 
prokMSA_id:72261 AJ276811 Micrococcus sp. strain LMG-19421
prokMSA_id:77387 AY167858 Micrococcus luteus strain SAFR-002 
2.30.1.9.1.6.3.35414 OTU 3 seqs
prokMSA_id:12454 X83409 Arthrobacter sulfureus DSM 20167
prokMSA_id:71728 AB046358 Arthrobacter sulfureus 
prokMSA_id:74823 AJ289962 isolate AH13 
2.30.1.9.1.6.3.41365 OTU 4 seqs
prokMSA_id:12456 X80745 Arthrobacter protophormiae str. M-570 DSM 20168
prokMSA_id:12474 X80739 Arthrobacter nicotianae str. 94 DSM 20123
prokMSA_id:45136 AJ315492 Arthrobacter nicotianae strain SB42
prokMSA_id:78055 AB098571 Arthrobacter sp. TUT1003 
2.30.1.9.1.6.3.42851 OTU 2 seqs
prokMSA_id:72015 AF394169 Blackwater bioreactor BW4 
prokMSA_id:78140 AJ536198 Micrococcus luteus strain DSM 20030T
2.30.1.9.1.6.3.42901 OTU 2 seqs
prokMSA_id:61986 AJ244665 Micrococcus sp. V4.MO.20 
prokMSA_id:80644 AY188937 Micrococcus sp. P_wp0222 
2.30.1.9.1.6.3.4301 OTU 1 seq
prokMSA_id:12457 U85893 Arthrobacter sp. str. MB90
2.30.1.9.1.6.3.4324 OTU 1 seq
prokMSA_id:12462 X83410 Arthrobacter uratoxydans DSM 20647
2.30.1.9.1.6.3.4378 OTU 1 seq
prokMSA_id:12479 D88211 Arthrobacter creatinolyticus str. GIFU 12498 GIFU 12498
2.30.1.9.1.6.3.4403 OTU 1 seq
prokMSA_id:12480 X80750 Micrococcus lylae str. JL 178 DSM 20315
2.30.1.9.1.6.4 NK.HALOBIA_SUBGROUP 5 seqs
2.30.1.9.1.6.4.30407 OTU 2 seqs
prokMSA_id:23405 X92155 sp. Crater Lake isolate 13C1
prokMSA_id:44941 X92154 sp. Lake Elmenteita isolate WE2
2.30.1.9.1.6.4.4417 OTU 1 seq
prokMSA_id:12485 X80747 Nesterenkonia halobia str. 28-3 DSM 20541
2.30.1.9.1.6.4.4418 OTU 1 seq
prokMSA_id:12486 AF140001 str. ML-162
2.30.1.9.1.6.4.4440 OTU 1 seq
prokMSA_id:12490 X80746 Arthrobacter atrocyaneus DSM 20127
2.30.1.9.1.6.5 ARB.CRYSTALLOPOIETES_SUBGROUP 1 seq
2.30.1.9.1.6.5.4442 OTU 1 seq
prokMSA_id:12491 X80738 Arthrobacter crystallopoietes DSM 20117
2.30.1.9.1.6.6 STT.MUCILAGINOSUS_SUBGROUP 12 seqs
2.30.1.9.1.6.6.31131 OTU 3 seqs
prokMSA_id:58293 AF543284 Rothia dentocariosa strain ChDC OS32 
prokMSA_id:58302 AF543277 Rothia dentocariosa strain ChDC B199 
prokMSA_id:58305 AF543276 Rothia dentocariosa strain ChDC B198 
2.30.1.9.1.6.6.32267 OTU 2 seqs
prokMSA_id:12497 X87758 Stomatococcus mucilaginosus DSM 20746
prokMSA_id:12498 X95483 Stomatococcus mucilaginosus str. strain DSM
2.30.1.9.1.6.6.34539 OTU 6 seqs
prokMSA_id:12496 Y13025 Actinomyces sp. str. CCUG 25688
prokMSA_id:33563 AJ131122 Rothia sp. CCUG 25688 
prokMSA_id:50851 AF332382 Arthrobacter sp. B10 
prokMSA_id:58299 AF543280 Rothia sp. ChDC B202 
prokMSA_id:58301 AF543279 Rothia sp. ChDC B201 
prokMSA_id:59468 AB071952 Rothia aerius 
2.30.1.9.1.6.6.5243 OTU 1 seq
prokMSA_id:58300 AF543278 Rothia dentocariosa strain ChDC B200 
2.30.1.9.1.6.7 KOCURIA_SUBGROUP 19 seqs
2.30.1.9.1.6.7.21565 OTU 1 seq
prokMSA_id:78681 AB094467 Kocuria sp. 2216.35.31 
2.30.1.9.1.6.7.2598 OTU 1 seq
prokMSA_id:50169 AF385532 Kocuria sp. oral clone AW006 
2.30.1.9.1.6.7.30710 OTU 3 seqs
prokMSA_id:12499 X87756 Kocuria rosea DSM 20447
prokMSA_id:12502 Y11330 Kocuria rosea str. KSE ATCC 187
prokMSA_id:35206 AJ278868 Kocuria polaris strain CMS76or
2.30.1.9.1.6.7.32238 OTU 5 seqs
prokMSA_id:12500 AF196342 Micrococcus SMCC ZAT351 SMCC ZAT351
prokMSA_id:12501 AF196343 Micrococcus SMCC ZAT352 SMCC ZAT352
prokMSA_id:12503 AB021326 str. rJ8
prokMSA_id:12504 Y16263 Kocuria palustris str. TAGA27 strain DSM 11925
prokMSA_id:35999 AF336354 Gram-positive Wuba45 
2.30.1.9.1.6.7.38623 OTU 2 seqs
prokMSA_id:12505 X87754 Kocuria varians DSM 20033
prokMSA_id:76966 AF542074 Kocuria varians 
2.30.1.9.1.6.7.41974 OTU 2 seqs
prokMSA_id:12506 Y16264 Kocuria rhizophila str. TA68 strain DSM 11926
prokMSA_id:16551 AY030315 Kocuria rhizophila strain JPL-9 
2.30.1.9.1.6.7.5710 OTU 1 seq
prokMSA_id:19877 AY030341 Kocuria rhizophila strain KL-057 
2.30.1.9.1.6.7.5736 OTU 1 seq
prokMSA_id:81250 AY211385 Kocuria sp. KMM 3905 
2.30.1.9.1.6.7.6405 OTU 1 seq
prokMSA_id:21109 AJ131121 Rothia-like sp. CCUG 35957 
2.30.1.9.1.6.7.8418 OTU 1 seq
prokMSA_id:37075 AY043359 Rothia amarae complete 
2.30.1.9.1.6.7.9655 OTU 1 seq
prokMSA_id:75116 AF542072 Kocuria rhizophila 
2.30.1.9.1.6.8 BRB.LINENS_SUBGROUP 13 seqs
2.30.1.9.1.6.8.30604 OTU 2 seqs
prokMSA_id:12517 X76564 Brevibacterium casei NCDO 2048
prokMSA_id:20188 AJ251418 Brevibacterium casei strain DSM 20657
2.30.1.9.1.6.8.31042 OTU 3 seqs
prokMSA_id:12520 X76567 Brevibacterium iodinum NCDO 613
prokMSA_id:12521 X77451 Brevibacterium linens
prokMSA_id:12522 X83813 Brevibacterium iodinum
2.30.1.9.1.6.8.31858 OTU 3 seqs
prokMSA_id:12512 AF133534 Brevibacterium otitidis str. Marseille 1998-67770 CIP 105044
prokMSA_id:12513 AF133537 Oerskovia CIP101491 str. 491 CIP 101
prokMSA_id:12514 X93593 Brevibacterium otitidis str. A37/73 NCFB 3053
2.30.1.9.1.6.8.5006 OTU 1 seq
prokMSA_id:36025 AJ251463 Brevibacterium paucivorans strain CF 62
2.30.1.9.1.6.8.5050 OTU 1 seq
prokMSA_id:12515 X76703 str. GH443
2.30.1.9.1.6.8.5053 OTU 1 seq
prokMSA_id:12516 X76566 Brevibacterium linens NCDO 739
2.30.1.9.1.6.8.5060 OTU 1 seq
prokMSA_id:12519 X76565 Brevibacterium epidermidis NCDO 2286
2.30.1.9.1.6.8.6774 OTU 1 seq
prokMSA_id:73538 AJ488509 Brevibacterium lutescens strain CF87T
2.30.1.9.1.6.99 VARIOUS 51 seqs
2.30.1.9.1.6.99.35724 OTU 8 seqs
prokMSA_id:12436 AF041789 Arthrobacter S23H2 str. S23H2
prokMSA_id:12437 AB002635 str. HTA275
prokMSA_id:12439 AF134184 Arthrobacter agilis str. LV7
prokMSA_id:17468 AJ315070 Arthrobacter sp. 19502 
prokMSA_id:61835 AF529327 actinobacterium clone CLi20 
prokMSA_id:68776 AF479325 Glacial ice CanDirty1 
prokMSA_id:70897 AJ315069 Arthrobacter sp. 19501 
prokMSA_id:74109 AJ315071 Arthrobacter sp. 19503 
2.30.1.9.1.6.99.37941 OTU 43 seqs
prokMSA_id:12374 X80742 Arthrobacter ramosus str. I Gm 25 DSM 20546
prokMSA_id:12393 AF102267 Arthrobacter chlorophenolicus str. A-6
prokMSA_id:12395 M23411 Arthrobacter globiformis str. 168 DSM 20124
prokMSA_id:12405 X80740 Arthrobacter pascens str. B89 DSM 20545
prokMSA_id:12407 X83408 Arthrobacter oxydans DSM 20119
prokMSA_id:12417 AF134179 Arthrobacter psychrolactophilus
prokMSA_id:12418 AF134180 Arthrobacter psychrolactophilus str. D10
prokMSA_id:12419 AF134181 Arthrobacter psychrolactophilus str. D2
prokMSA_id:12421 AF134183 Arthrobacter psychrolactophilus str. RG1
prokMSA_id:12427 X80736 Arthrobacter globiformis str. 168 DSM 20124
prokMSA_id:12433 X80748 Arthrobacter agilis str. W.O. 219 DSM 20550
prokMSA_id:12440 X80737 Arthrobacter citreus str. C7 DSM 20133
prokMSA_id:12441 U96186 Rathayibacter rathayi ATCC 13659
prokMSA_id:12442 AJ243422 Arthrobacter CF-25 str. CF-25
prokMSA_id:12452 X83405 Arthrobacter aurescens DSM 20116
prokMSA_id:12453 AB017650 Arthrobacter sp. str. 19C
prokMSA_id:16350 AF197025 Arthrobacter sp. 'SMCC G960' 
prokMSA_id:17243 AF197029 Arthrobacter sp. 'SMCC G964' 
prokMSA_id:18132 AF197057 Arthrobacter sp. 'SMCC ZAT277' 
prokMSA_id:19576 AF197049 Arthrobacter sp. 'SMCC ZAT031' 
prokMSA_id:19838 AF235090 Arthrobacter methylotrophus 
prokMSA_id:27187 AF235091 Arthrobacter sulfonivorans 
prokMSA_id:28569 AF197040 Arthrobacter sp. 'SMCC G991' 
prokMSA_id:31087 AF423303 soil clone 987-1 
prokMSA_id:39179 AF197053 Arthrobacter sp. 'SMCC ZAT200' 
prokMSA_id:39874 AF423301 soil clone 960-2 
prokMSA_id:42596 AF467106 Arthrobacter aurescens strain TA13 
prokMSA_id:43708 AB039736 Arthrobacter sp. CAB1 
prokMSA_id:44124 AB070602 Arthrobacter sp. JCM 1339 
prokMSA_id:46937 AF330692 Arthrobacter sp. YH-2001 
prokMSA_id:49314 AF388034 Arthrobacter sp. 53 
prokMSA_id:49669 AF197041 Arthrobacter sp. 'SMCC G993' 
prokMSA_id:60440 AY131225 Arthrobacter sp. Fa21 
prokMSA_id:64360 AJ491108 Arthrobacter gandensis strain R5815
prokMSA_id:68760 AF479340 Glacial ice Guliya200-A1 
prokMSA_id:72673 AF479341 Glacial ice G200-C1 
prokMSA_id:72942 AJ244667 Arthrobacter like sp. V4.BS.11 
prokMSA_id:75566 AJ512504 Arthrobacter nitroguaiacolicus strain DSM 4924
prokMSA_id:77488 AY167845 Arthrobacter chlorophenolicus strain SAFR-044 
prokMSA_id:77502 AY167856 Arthrobacter globiformis strain SAFR-004 
prokMSA_id:77583 AJ316140 Arthrobacter gandensis strain R5812T
prokMSA_id:78280 AB098573 Arthrobacter globiformis 
prokMSA_id:78941 AY176765 Arthrobacter sp. HJ4 
2.30.1.9.1.7 DERMATOPHILUS_SUBGROUP 45 seqs
2.30.1.9.1.7.1 BCB.FAECIUM_SUBGROUP 27 seqs
2.30.1.9.1.7.1.13141 OTU 1 seq
prokMSA_id:31079 T AJ415376 Brachybacterium rhamnosum isolate LMG 19848
2.30.1.9.1.7.1.19794 OTU 1 seq
prokMSA_id:78446 AJ537574 Brachybacterium sp. C3H-21 strain C3H-21
2.30.1.9.1.7.1.32261 OTU 3 seqs
prokMSA_id:12524 X89561 Microthrix parvicella
prokMSA_id:12525 X89774 Microthrix parvicella
prokMSA_id:12527 X89560 Microthrix parvicella
2.30.1.9.1.7.1.3274 OTU 1 seq
prokMSA_id:80363 AF468445 Arctic sea ice ARK9984 
2.30.1.9.1.7.1.40598 OTU 18 seqs
prokMSA_id:12528 X91030 Brachybacterium conglomeratum NCIMB 9859
prokMSA_id:12529 X91657 Brachybacterium tyrofermentans CNRZ 926
prokMSA_id:12530 AF041790 Brachybacterium S21F1 str. S21F1
prokMSA_id:12531 X91031 Brachybacterium alimentarium CNRZ 925
prokMSA_id:19170 AJ415381 Brachybacterium sacelli isolate LMG 20339
prokMSA_id:29857 AJ415379 Brachybacterium fresconis isolate LMG 20333
prokMSA_id:30645 AF324202 Brachybacterium sp. V589 
prokMSA_id:50941 T AJ415378 Brachybacterium fresconis isolate LMG 20336
prokMSA_id:70209 AF434185 Brachybacterium arcticum strain Lact 5.2 complete 
prokMSA_id:70437 AJ415383 Brachybacterium sacelli isolate LMG 20342
prokMSA_id:70869 T AJ415384 Brachybacterium sacelli isolate LMG 20345
prokMSA_id:71482 AF513397 Brachybacterium sp. Lact5.2 
prokMSA_id:71795 T AJ415377 Brachybacterium paraconglomeratum isolate LMG 19861
prokMSA_id:73577 AJ415382 Brachybacterium sacelli isolate LMG 20343
prokMSA_id:74355 AJ415380 Brachybacterium sacelli isolate LMG 20338
prokMSA_id:77571 AY167842 Brachybacterium conglomeratum strain SAFR-049 
prokMSA_id:77876 AB098579 Brachybacterium paraconglomeratum 
prokMSA_id:81998 AB101583 Jellyfish-degrading TN-2003 
2.30.1.9.1.7.1.42052 OTU 2 seqs
prokMSA_id:12523 X83810 Brachybacterium faecium
prokMSA_id:12526 X91032 Brachybacterium faecium DSM 4810
2.30.1.9.1.7.1.5123 OTU 1 seq
prokMSA_id:12532 X91033 Brachybacterium nesterenkovii DSM 9573
2.30.1.9.1.7.2 DRB.HOMINIS_SUBGROUP 5 seqs
2.30.1.9.1.7.2.32722 OTU 5 seqs
prokMSA_id:12533 X91034 Dermabacter hominis DSM 7083
prokMSA_id:12534 X76728 Dermabacter hominis NCFB 2769
prokMSA_id:12535 S71384 Dermabacter sp. str. CDC group 5 8
prokMSA_id:12536 X76733 Dermabacter sp. str. CDC group 3 427
prokMSA_id:25478 AF343728 Dermabacter hominis 
2.30.1.9.1.7.3 DER.CONGOLENSIS_SUBGROUP 13 seqs
2.30.1.9.1.7.3.1571 OTU 1 seq
prokMSA_id:26586 AJ243919 Dermatophilus chelonae DSM 44178 strain
2.30.1.9.1.7.3.21389 OTU 1 seq
prokMSA_id:62967 AF527583 clone LPB21 
2.30.1.9.1.7.3.2349 OTU 1 seq
prokMSA_id:33876 AF226615 Dermatophilus crocodyli 
2.30.1.9.1.7.3.29763 OTU 4 seqs
prokMSA_id:19020 AF387310 actinobacterium clone SBRA95 
prokMSA_id:19760 AF387309 actinobacterium clone SBRA375 
prokMSA_id:20014 AF387306 actinobacterium clone SBRA213 
prokMSA_id:25122 AF387305 actinobacterium clone SBRA20 
2.30.1.9.1.7.3.32319 OTU 2 seqs
prokMSA_id:12540 L40615 Dermatophilus congolensis ATCC 14637
prokMSA_id:12541 M59057 Dermatophilus congolensis ATCC 14637
2.30.1.9.1.7.3.5137 OTU 1 seq
prokMSA_id:12537 X87757 Dermacoccus nishinomiyaensis DSM 20448
2.30.1.9.1.7.3.5139 OTU 1 seq
prokMSA_id:12538 Y14152 Demetria terragena str. HKI 0089 DSM 11295
2.30.1.9.1.7.3.5140 OTU 1 seq
prokMSA_id:12539 X87755 Kytococcus sedentarius DSM 20547
2.30.1.9.1.7.3.8849 OTU 1 seq
prokMSA_id:52125 AJ297722 Kytococcus sp. Muenster 2000 
2.30.1.9.1.8 BG.CASEILYTICA 1 seq
2.30.1.9.1.8.5165 OTU 1 seq
prokMSA_id:12542 Y09911 Bogoriella caseilytica HKI 0088
2.30.1.9.1.99 VARIOUS 58 seqs
2.30.1.9.1.99.41900 OTU 5 seqs
prokMSA_id:12322 X83805 Cellulomonas fermentans
prokMSA_id:12336 X87310 str. SR 272
prokMSA_id:12343 X79458 Cellulomonas fermentans DSM 3133
prokMSA_id:52667 AJ298873 Cellulomonas variformis strain MX5
prokMSA_id:81576 AY205295 Cellulomonas sp. CR1-1 
2.30.1.9.1.99.42877 OTU 53 seqs
prokMSA_id:12202 AB004717 Microbacterium keratanolyticum IFO 13309
prokMSA_id:12204 Y17233 Microbacterium keratanolyticum DSM 8606
prokMSA_id:12205 AB004719 Microbacterium saperdae str. 48-1-4 IFO 15038
prokMSA_id:12208 X77442 Microbacterium imperiale DSM 20530
prokMSA_id:12212 AB007415 Microbacterium lacticum
prokMSA_id:12213 Y17229 Microbacterium aurum DSM 8600
prokMSA_id:12215 D21344 Microbacterium laevaniformans IFO 14471
prokMSA_id:12218 AB015562 str. BD4-12
prokMSA_id:12219 D21343 Microbacterium lacticum IFO 14135
prokMSA_id:12220 AB007416 Microbacterium laevaniformans
prokMSA_id:12222 AB004727 Microbacterium hominis IFO 15708
prokMSA_id:12223 AB021324 str. rJ6
prokMSA_id:12225 AB004728 Microbacterium sp. IFO 15709
prokMSA_id:12226 AB004721 Microbacterium terregens str. 88 IFO 12961
prokMSA_id:12229 AB008512 str. 13-2
prokMSA_id:12232 AB004716 Microbacterium flavescens IFO 15039
prokMSA_id:12233 X95482 Microbacterium sp. str. gh942
prokMSA_id:12234 Y17230 Microbacterium dextranolyticum str. M-73 DSM 8607
prokMSA_id:12235 Y17234 Microbacterium laevaniformans DSM 20140
prokMSA_id:12241 AB013907 Microbacterium Aureobacterium kitamiense str. kitami C2
prokMSA_id:12242 AB013919 Microbacterium Aureobacterium kitamiense str. kitami C2
prokMSA_id:12244 AB002638 str. HTA459
prokMSA_id:12250 AB004724 Microbacterium ketosireducens IFO 14548
prokMSA_id:12251 AB004720 Microbacterium terrae IFO 15300
prokMSA_id:12252 Y17232 Microbacterium flavescens DSM 20643
prokMSA_id:12253 Y17238 Microbacterium terrae DSM 8610
prokMSA_id:18236 AB032250 RSB-1 
prokMSA_id:19202 AF319539 Microbacterium nematophilum 
prokMSA_id:19310 AF306542 Microbacterium sp. I33 
prokMSA_id:20016 AF423215 soil clone 1245-2 
prokMSA_id:21283 AB042080 Microbacterium sp. VKM Ac-2015 
prokMSA_id:23056 AB042076 Microbacterium sp. VKM Ac-2011 
prokMSA_id:24767 AF287752 Microbacterium sp. oral strain C24KA 
prokMSA_id:25944 AF260714 Microbacterium sp. S10 
prokMSA_id:26169 AF349766 TCE16 
prokMSA_id:26967 AB042083 Microbacterium sp. VKM Ac-2048 
prokMSA_id:29423 AJ251194 Microbacterium sp. MAS133 strain MAS133
prokMSA_id:31778 AF157480 Frigoribacterium sp. 312 
prokMSA_id:32634 Y17240 Microbacterium trichotecenolyticum 
prokMSA_id:41920 AJ296094 Microbacterium sp. OS-6 strain OS-6
prokMSA_id:42242 AF394172 Blackwater bioreactor BW7 
prokMSA_id:42905 AB042092 Curtobacterium sp. VKM Ac-2057 
prokMSA_id:47252 AF329727 Microbacterium sp. absalar 
prokMSA_id:50641 AB042079 Microbacterium sp. VKM Ac-2014 
prokMSA_id:52309 AB042077 Microbacterium sp. VKM Ac-2012 
prokMSA_id:54001 AB042078 Microbacterium sp. VKM Ac-2013 
prokMSA_id:64365 AY082801 Microbacterium sp. 44574 
prokMSA_id:66592 AF474327 Microbacterium testaceum strain SE034 
prokMSA_id:68740 AF479361 Glacial ice SB12K-2-3 
prokMSA_id:71669 AF535159 Microbacterium laevaniformans LA complete 
prokMSA_id:72814 AJ309929 Microbacterium aerolatum 
prokMSA_id:77157 AJ534677 actinobacterium clone S15A-MN4
prokMSA_id:77572 AY167852 Microbacterium phyllosphaerae strain SAFR-012 
2.30.1.9.2 ACTINOMYCES_AND_RELATIVES 167 seqs
2.30.1.9.2.1 ACTINOMYCES_SUBGROUP 90 seqs
2.30.1.9.2.1.1 ACT.VISCOSUS_SUBGROUP 38 seqs
2.30.1.9.2.1.1.12457 OTU 1 seq
prokMSA_id:23149 AF287748 Actinomyces sp. oral strain B19SC 
2.30.1.9.2.1.1.1307 OTU 1 seq
prokMSA_id:27124 AJ234056 Actinomyces viscosus strain CCUG 35332
2.30.1.9.2.1.1.15028 OTU 1 seq
prokMSA_id:24150 AJ234039 Actinomyces bowdenii strain M1956/95/1
2.30.1.9.2.1.1.21146 OTU 1 seq
prokMSA_id:26223 AJ251986 Actinomyces radicidentis 
2.30.1.9.2.1.1.21248 OTU 1 seq
prokMSA_id:33488 AB062818 clone:BCf3-22
2.30.1.9.2.1.1.21281 OTU 1 seq
prokMSA_id:79234 AJ540309 Actinomyces graevenitzii strain CCUG 27294T
2.30.1.9.2.1.1.29034 OTU 3 seqs
prokMSA_id:17127 AJ243893 Actinomyces urogenitalis mRNA 
prokMSA_id:21028 AJ243894 Actinomyces urogenitalis mRNA 
prokMSA_id:40580 AJ243791 Actinomyces urogenitalis 
2.30.1.9.2.1.1.29635 OTU 2 seqs
prokMSA_id:33765 AJ276405 Actinomyces marimamalium strain CCUG 41710
prokMSA_id:45030 AJ249327 Actinomyces sp. CCUG 41710 
2.30.1.9.2.1.1.30222 OTU 3 seqs
prokMSA_id:12547 X82452 Actinomyces slackii NCTC 11923
prokMSA_id:40753 AJ234066 Actinomyces slackii strain CCUG 32792 clone 1
prokMSA_id:49536 AJ234067 Actinomyces slackii strain CCUG 32792 clone 2
2.30.1.9.2.1.1.32681 OTU 3 seqs
prokMSA_id:28461 AJ234063 Actinomyces sp. strain M2231/94/1
prokMSA_id:31181 AJ249328 Actinomyces sp. CCUG 41709 
prokMSA_id:47874 AJ276805 Actinomyces catuli 
2.30.1.9.2.1.1.34440 OTU 15 seqs
prokMSA_id:12545 X82453 Actinomyces viscosus NCTC 10951
prokMSA_id:22197 AY008315 Actinomyces sp. oral clone EP011 
prokMSA_id:23267 AJ234049 Actinomyces sp. strain CCUG 33931
prokMSA_id:30901 AJ234048 Actinomyces naeslundii strain CCUG 33914
prokMSA_id:42280 AY008314 Actinomyces sp. oral clone EP005 
prokMSA_id:45176 AJ234051 Actinomyces naeslundii strain CCUG 34286 clone 1
prokMSA_id:46052 AF287747 Actinomyces sp. oral clone AG004 
prokMSA_id:47140 AJ234053 Actinomyces viscosus strain CCUG 34288
prokMSA_id:50539 AJ234045 Actinomyces naeslundii strain CCUG 33519
prokMSA_id:58283 AF543297 Actinomyces sp. ChDC OS47 
prokMSA_id:58292 AF543286 Actinomyces viscosus 
prokMSA_id:58304 AF543275 Actinomyces sp. ChDC B197 
prokMSA_id:58541 AJ507295 Actinomyces oricola strain CCUG 46090T
prokMSA_id:71223 AF287749 Actinomyces sp. oral clone AP064 
prokMSA_id:74701 AJ234052 Actinomyces naeslundii strain strain CCUG 34286 clone 2
2.30.1.9.2.1.1.5167 OTU 1 seq
prokMSA_id:12543 X82450 Actinomyces israelii CIP 103259
2.30.1.9.2.1.1.5175 OTU 1 seq
prokMSA_id:12548 X81061 Actinomyces bovis NCTC 11535
2.30.1.9.2.1.1.5200 OTU 1 seq
prokMSA_id:12558 X80411 Actinomyces howellii NCTC 11636
2.30.1.9.2.1.1.5211 OTU 1 seq
prokMSA_id:12560 X80414 Actinomyces gerencseriae DSM 6844
2.30.1.9.2.1.1.5217 OTU 1 seq
prokMSA_id:12562 Y08828 Actinomyces europaeus CCUG 32789A
2.30.1.9.2.1.1.5214 OTU 1 seq
prokMSA_id:12561 X80412 Actinomyces denticolens NCTC 11490
2.30.1.9.2.1.2 ACT.NEUII_SUBGROUP 28 seqs
2.30.1.9.2.1.2.10336 OTU 1 seq
prokMSA_id:60136 AJ421779 Actinomyces sp. CCUG 44997 
2.30.1.9.2.1.2.10951 OTU 1 seq
prokMSA_id:29527 AF385521 Actinomyces sp. oral strain Hal-1065 
2.30.1.9.2.1.2.11486 OTU 1 seq
prokMSA_id:67513 AJ277385 Actinomyces suimastitidis strain CCUG 39276
2.30.1.9.2.1.2.13239 OTU 1 seq
prokMSA_id:23235 AF355192 Actinomyces sp. VA20732_01 
2.30.1.9.2.1.2.31125 OTU 2 seqs
prokMSA_id:12563 X71862 Actinomyces neuii subsp. anitratus str. 50/90
prokMSA_id:12564 X71861 Actinomyces neuii subsp. neuii str. 97/90
2.30.1.9.2.1.2.32121 OTU 3 seqs
prokMSA_id:44425 AJ243892 Actinomyces sp. CCUG 34479 mRNA 
prokMSA_id:47127 AJ243891 Actinomyces sp. CCUG 41706 mRNA 
prokMSA_id:50842 AJ234061 Actinomyces sp. strain M1429/94/1
2.30.1.9.2.1.2.32499 OTU 2 seqs
prokMSA_id:12570 X80413 Actinomyces georgiae DSM 6843
prokMSA_id:29001 AF287750 Actinomyces sp. oral strain B27SC 
2.30.1.9.2.1.2.33381 OTU 2 seqs
prokMSA_id:12566 X87133 unnamed organism
prokMSA_id:12567 X78720 Actinomyces turicensis str. APL10 DSM 9168
2.30.1.9.2.1.2.3413 OTU 1 seq
prokMSA_id:72536 AJ404889 Actinomyces funkeii strain CCUG 42773
2.30.1.9.2.1.2.34412 OTU 9 seqs
prokMSA_id:12574 X78721 Actinomyces sp. str. APL11
prokMSA_id:18829 AJ234058 Actinomyces sp. strain CCUG 37290
prokMSA_id:23262 AJ234047 Actinomyces odontolyticus strain CCUG 33767
prokMSA_id:28910 AJ234042 Actinomyces odontolyticus strain CCUG 32834
prokMSA_id:45427 AJ234041 Actinomyces odontolyticus strain CCUG 28084
prokMSA_id:52899 AJ234040 Actinomyces odontolyticus strain CCUG 20536T
prokMSA_id:70945 AF385504 Actinomyces sp. oral clone CT047 
prokMSA_id:71551 AF385505 Actinomyces sp. oral clone CT068 
prokMSA_id:74130 AF385522 Actinomyces sp. oral strain Hal-1083 
2.30.1.9.2.1.2.34558 OTU 2 seqs
prokMSA_id:12569 X69616 Actinomyces hyovaginalis NCFB 2983
prokMSA_id:47631 AJ293302 Actinomyces hyovaginalis strain UZCOR144
2.30.1.9.2.1.2.42586 OTU 2 seqs
prokMSA_id:25517 AJ234054 Actinomyces odontolyticus strain CCUG 34689
prokMSA_id:44463 AJ271894 Actinomyces lingnae strain CCUG 3286
2.30.1.9.2.1.2.5265 OTU 1 seq
prokMSA_id:12571 X82451 Actinomyces meyeri CIP 103148
2.30.1.9.2.1.4 ACT.HORDEOVULNERIS 1 seq
2.30.1.9.2.1.4.5319 OTU 1 seq
prokMSA_id:12589 X82448 Actinomyces hordeovulneris CIP 103149
2.30.1.9.2.1.5 ABC.PYOGENES_SUBGROUP 19 seqs
2.30.1.9.2.1.5.10728 OTU 1 seq
prokMSA_id:81857 AF487681 Actinobaculum schaalii strain PA 
2.30.1.9.2.1.5.19166 OTU 1 seq
prokMSA_id:24783 AJ234059 Arcanobacterium haemolyticum strain CIP 103370
2.30.1.9.2.1.5.27287 OTU 2 seqs
prokMSA_id:19834 AJ318410 Mobiluncus mulieris strain CCUG 20071T
prokMSA_id:77875 AJ427625 Mobiluncus mulieris strain CCUG 20071T
2.30.1.9.2.1.5.2951 OTU 1 seq
prokMSA_id:71888 AF487679 Actinobaculum massiliae strain CIP 107404 
2.30.1.9.2.1.5.32785 OTU 4 seqs
prokMSA_id:12595 X79224 Arcanobacterium bernardiae str. LCDC 89-0504 DSM 9152
prokMSA_id:12597 X79225 Arcanobacterium pyogenes NCTC 5224
prokMSA_id:29935 AJ298658 Arcanobacterium sp. HJ57-14E strain HJ57-14E
prokMSA_id:47347 AJ298656 Arcanobacterium sp. HJ55-94AV329.2 strain HJ55-94AV329.2
2.30.1.9.2.1.5.40284 OTU 2 seqs
prokMSA_id:16861 AJ243793 Arcanobacterium sp. CCUG 41704# 
prokMSA_id:25077 AJ243794 Arcanobacterium sp. CCUG 41705# 
2.30.1.9.2.1.5.5334 OTU 1 seq
prokMSA_id:12590 X97049 Arcanobacterium phocae str. M2546/94/1 DSM 10004
2.30.1.9.2.1.5.5337 OTU 1 seq
prokMSA_id:12591 X73952 Arcanobacterium haemolyticum str. 53/W/1 NCTC 9697
2.30.1.9.2.1.5.5339 OTU 1 seq
prokMSA_id:12592 S83623 Actinobaculum suis DSM 20639
2.30.1.9.2.1.5.5344 OTU 1 seq
prokMSA_id:12594 Y10773 Actinobaculum schaalii CCUG 27420
2.30.1.9.2.1.5.5342 OTU 1 seq
prokMSA_id:12593 Y12329 Actinobaculum schaalii CCUG 27420
2.30.1.9.2.1.5.7469 OTU 1 seq
prokMSA_id:73602 AY008311 Actinobaculum sp. oral clone EL030 
2.30.1.9.2.1.5.795 OTU 1 seq
prokMSA_id:33696 AJ250959 Arcanobacterium sp. strain M430/94/2
2.30.1.9.2.1.5.831 OTU 1 seq
prokMSA_id:19270 AF433168 Actinomyces hongkongensis 
2.30.1.9.2.1.6 JNS.DENITRIFICANS_SUBGROUP 4 seqs
2.30.1.9.2.1.6.32303 OTU 2 seqs
prokMSA_id:12599 X83811 Jonesia denitrificans
prokMSA_id:12600 X78420 Jonesia denitrificans NCTC 10816
2.30.1.9.2.1.6.35499 OTU 2 seqs
prokMSA_id:77730 AB098584 Jonesia sp. TUT1016 
prokMSA_id:78074 AB098583 Jonesia sp. TUT1015 
2.30.1.9.2.2 BIFIDOBACTERIUM_SUBGROUP 77 seqs
2.30.1.9.2.2.1 BIF.MINIMUM_SUBGROUP 6 seqs
2.30.1.9.2.2.1.11027 OTU 1 seq
prokMSA_id:43993 D86192 Bifidobacterium merycicum 
2.30.1.9.2.2.1.19144 OTU 1 seq
prokMSA_id:24773 AF321296 Bifidobacterium sp. group II-3 
2.30.1.9.2.2.1.19720 OTU 1 seq
prokMSA_id:78420 AY174103 Bifidobacterium minimum 
2.30.1.9.2.2.1.494 OTU 1 seq
prokMSA_id:34238 AF371711 clone p-3348-23G2 
2.30.1.9.2.2.1.5902 OTU 1 seq
prokMSA_id:12604 D86188 Bifidobacterium indicum JCM 1302
2.30.1.9.2.2.1.5907 OTU 1 seq
prokMSA_id:12606 D86182 Bifidobacterium angulatum str. strain ATCC 27535
2.30.1.9.2.2.2 BIF.CATENULATUM_SUBGROUP 2 seqs
2.30.1.9.2.2.2.1470 OTU 1 seq
prokMSA_id:49417 AF333390 Bifidobacterium pseudocatenulatum 
2.30.1.9.2.2.2.319 OTU 1 seq
prokMSA_id:78797 AY174108 Bifidobacterium psychroaerophilum 
2.30.1.9.2.2.3 BIF.BIFIDUM_SUBGROUP 14 seqs
2.30.1.9.2.2.3.1523 OTU 1 seq
prokMSA_id:63870 AJ278694 Bifidobacterium urinalis strain CCUG 26938
2.30.1.9.2.2.3.18099 OTU 1 seq
prokMSA_id:70349 AF287758 Bifidobacterium sp. oral clone CX010 
2.30.1.9.2.2.3.31407 OTU 3 seqs
prokMSA_id:12617 U25952 Bifidobacterium bifidum KCTC 3202
prokMSA_id:12624 U25951 Bifidobacterium bifidum KCTC 3202
prokMSA_id:12627 S83624 Bifidobacterium bifidum DSM 20456
2.30.1.9.2.2.3.31410 OTU 2 seqs
prokMSA_id:12622 D89378 Bifidobacterium subtile DSM 20096
prokMSA_id:12623 D89379 Bifidobacterium subtile JCM 7109
2.30.1.9.2.2.3.32518 OTU 2 seqs
prokMSA_id:17910 AF227870 Bifidobacterium sp. 65947 
prokMSA_id:63018 AJ307005 Bifidobacterium scardovii strain CCUG 13008
2.30.1.9.2.2.3.5942 OTU 1 seq
prokMSA_id:12619 AB029087 Bifidobacterium inopinatum str. strain DSM 10107
2.30.1.9.2.2.3.5940 OTU 1 seq
prokMSA_id:12618 AB016246 Bifidobacterium thermophilum
2.30.1.9.2.2.3.5962 OTU 1 seq
prokMSA_id:12621 D89332 Bifidobacterium inopinatum str. strain DSM 10107
2.30.1.9.2.2.3.5960 OTU 1 seq
prokMSA_id:12620 D89331 Bifidobacterium denticolens str. strain DSM 10105
2.30.1.9.2.2.3.6201 OTU 1 seq
prokMSA_id:72858 AF385524 Bifidobacterium sp. oral strain H6-M4 
2.30.1.9.2.2.4 BIF.LACTIS_SUBGROUP 15 seqs
2.30.1.9.2.2.4.33674 OTU 4 seqs
prokMSA_id:12636 D86194 Bifidobacterium pseudolongum subsp. globosum JCM 5820
prokMSA_id:12637 D86195 Bifidobacterium pseudolongum subsp. pseudolongum JCM 1205
prokMSA_id:78584 AY174106 Bifidobacterium pseudolongum subsp. pseudolongum 
prokMSA_id:78906 AY174105 Bifidobacterium pseudolongum subsp. globosum 
2.30.1.9.2.2.4.40148 OTU 8 seqs
prokMSA_id:12630 X89111 Bifidobacterium sp
prokMSA_id:12631 D86185 Bifidobacterium animalis JCM 1190
prokMSA_id:42998 AB027536 Bifidobacterium animalis 
prokMSA_id:44833 AB050138 Bifidobacterium animalis strain:YIT 4090
prokMSA_id:48030 AB050136 Bifidobacterium lactis strain:YIT 4121
prokMSA_id:51788 AJ311604 Bifidobacterium infantis strain Y1
prokMSA_id:52295 AB050137 Bifidobacterium animalis strain:YIT 4119
prokMSA_id:71420 X89513 B.lactis and 23S 
2.30.1.9.2.2.4.5989 OTU 1 seq
prokMSA_id:12629 X89513 Bifidobacterium lactis str. UR1
2.30.1.9.2.2.4.6018 OTU 1 seq
prokMSA_id:12632 D86186 Bifidobacterium choerinum ATCC 27686
2.30.1.9.2.2.4.6060 OTU 1 seq
prokMSA_id:12640 D86193 Bifidobacterium magnum JCM 8219
2.30.1.9.2.2.5 BIF.INFANTIS_SUBGROUP 13 seqs
2.30.1.9.2.2.5.19239 OTU 1 seq
prokMSA_id:77771 AY172657 Bifidobacterium breve strain KB 72 
2.30.1.9.2.2.5.30035 OTU 2 seqs
prokMSA_id:78555 AY174104 Bifidobacterium aerophilum 
prokMSA_id:78586 AY174107 Bifidobacterium aerophilum 
2.30.1.9.2.2.5.31235 OTU 5 seqs
prokMSA_id:12646 D86191 Bifidobacterium gallinarum JCM 6291
prokMSA_id:12647 D86196 Bifidobacterium pullorum JCM 1214
prokMSA_id:12648 D89328 Bifidobacterium saeculare str. strain DSM 6531
prokMSA_id:12649 D89329 Bifidobacterium subtile JCM 7109
prokMSA_id:12650 D89330 Bifidobacterium saeculare DSM 6533
2.30.1.9.2.2.5.41623 OTU 2 seqs
prokMSA_id:28109 AJ311605 Bifidobacterium breve strain Y8
prokMSA_id:37229 AJ311606 Bifidobacterium longum strain Y10
2.30.1.9.2.2.5.42026 OTU 3 seqs
prokMSA_id:55278 AY151399 Bifidobacterium longum strain KB 6 
prokMSA_id:57338 AY151398 Bifidobacterium infantis strain KB 10 
prokMSA_id:78304 AY172656 Bifidobacterium breve strain KB 69 
2.30.1.9.2.2.99 VARIOUS 27 seqs
2.30.1.9.2.2.99.42143 OTU 27 seqs
prokMSA_id:12610 D86187 Bifidobacterium pseudocatenulatum str. strain JCM 1200
prokMSA_id:12613 D86183 Bifidobacterium dentium ATCC 27534
prokMSA_id:12615 D86197 Bifidobacterium ruminantium JCM 8222
prokMSA_id:12625 D86190 Bifidobacterium boum JCM 1211
prokMSA_id:12645 D86184 Bifidobacterium infantis ATCC 15697
prokMSA_id:16594 AF275881 Bifidobacterium adolescentis clone nru-1 
prokMSA_id:17245 AF321295 Bifidobacterium sp. group I-3 
prokMSA_id:21503 AF432082 Bifidobacterium catenulatum 
prokMSA_id:22676 AF275883 Bifidobacterium sp. 15B 
prokMSA_id:25225 AB034094 rumen 3C3d-20 
prokMSA_id:29658 AF287759 Bifidobacterium sp. oral strain A32ED 
prokMSA_id:30243 AF275882 Bifidobacterium adolescentis clone nru-5 
prokMSA_id:32427 AJ270492 Butyrate-producing T1-817 
prokMSA_id:35146 AF357558 mpn-isolate group 10 
prokMSA_id:39484 AF275885 Bifidobacterium sp. 15A 
prokMSA_id:42077 AB034095 rumen 4C3d-16 
prokMSA_id:45910 AF275893 Bifidobacterium sp. 9B 
prokMSA_id:50025 AF306789 Bifidobacterium sp. PL1 
prokMSA_id:55846 AY148470 Bifidobacterium thermacidophilum subsp. suis complete 
prokMSA_id:56345 AF491832 Bifidobacterium breve strain JCM 1273 
prokMSA_id:68373 AF491835 Bifidobacterium breve strain JCM 7017 
prokMSA_id:68376 AF491836 Bifidobacterium breve strain JCM 7019 
prokMSA_id:68377 AF491834 Bifidobacterium breve strain JCM 7016 
prokMSA_id:68379 AF491833 Bifidobacterium breve strain JCM 7020 
prokMSA_id:70122 AF253364 human infant N55G 
prokMSA_id:71297 AF321297 Bifidobacterium sp. group III-3 
prokMSA_id:72820 AF253365 human infant S6C 
2.30.1.9.3 KINEOSPORIA_GROUP 37 seqs
2.30.1.9.3.28041 OTU 10 seqs
prokMSA_id:12666 AF060670 str. AS2989
prokMSA_id:12668 AF060674 str. AS2964
prokMSA_id:12669 AF060675 str. AS2965
prokMSA_id:12670 AF060677 str. AS2985
prokMSA_id:12677 AF060685 str. AS3090
prokMSA_id:12678 AF060687 str. AS3142
prokMSA_id:12680 AF060690 str. AS3380
prokMSA_id:12685 AF060695 str. AS3641
prokMSA_id:31916 AF095335 Kineococcus-like str. AS3650 
prokMSA_id:33896 AF095334 Kineococcus-like str. AS3642 
2.30.1.9.3.31270 OTU 4 seqs
prokMSA_id:12667 AF060673 str. AS2960
prokMSA_id:12671 AF060679 str. AS2953
prokMSA_id:12672 AF060680 str. AS3041
prokMSA_id:12673 AF060681 str. AS3042
2.30.1.9.3.31291 OTU 3 seqs
prokMSA_id:12682 AF060692 str. AS3382
prokMSA_id:12683 AF060693 str. AS3630
prokMSA_id:12684 AF060694 str. AS3635
2.30.1.9.3.31277 OTU 3 seqs
prokMSA_id:12675 AF060683 str. AS3080
prokMSA_id:12676 AF060684 str. AS3088
prokMSA_id:12679 AF060688 str. AS3148
2.30.1.9.3.33977 OTU 5 seqs
prokMSA_id:12692 AF060671 str. AS2988
prokMSA_id:12693 AF060672 str. AS2987
prokMSA_id:12694 AF060676 str. AS2978
prokMSA_id:12695 AF060689 str. AS3187
prokMSA_id:25938 AF060686 Kineococcus-like AS3138 complete 
2.30.1.9.3.35111 OTU 4 seqs
prokMSA_id:12686 X87110 Kineosporia aurantiaca ATCC 29727
prokMSA_id:12688 D86937 Kineosporia aurantiaca IFO 14067
prokMSA_id:12699 X87617 str. SR 11
prokMSA_id:24568 AF095336 Kineosporia aurantiaca 
2.30.1.9.3.6131 OTU 1 seq
prokMSA_id:12663 D17527 Kineococcus aurantiacus IFO 15268
2.30.1.9.3.6135 OTU 1 seq
prokMSA_id:12665 AB007420 Kineococcus aurantiacus IFO 15268
2.30.1.9.3.6205 OTU 1 seq
prokMSA_id:12689 AB003935 Kineosporia rhamnosa str. I-132 JCM 9954
2.30.1.9.3.6219 OTU 1 seq
prokMSA_id:12690 X92365 str. G10 dolomite marbel Namibia
2.30.1.9.3.6222 OTU 1 seq
prokMSA_id:12691 AB003934 Kineosporia rhamnosa str. I-113 JCM 9953
2.30.1.9.3.6230 OTU 1 seq
prokMSA_id:12697 X87311 str. SR 139
2.30.1.9.3.6229 OTU 1 seq
prokMSA_id:12696 AB003933 Kineosporia rhizophila str. I-449 JCM 9960
2.30.1.9.3.6759 OTU 1 seq
prokMSA_id:12700 AB003931 Kineosporia aurantiaca JCM 3230
2.30.1.9.4 THERMOCRISPUM_GROUP 2 seqs
2.30.1.9.4.13512 OTU 1 seq
prokMSA_id:46191 AJ249326 Actinomyces sp. CCUG 41708 
2.30.1.9.4.6761 OTU 1 seq
prokMSA_id:12701 X79184 Thermocrispum municipale str. MKD 35 DSM 44069
2.30.1.9.99 VARIOUS 3 seqs
2.30.1.9.99.41641 OTU 3 seqs
prokMSA_id:12553 X81063 Actinomyces sp. ATCC 49338
prokMSA_id:70481 AJ308598 Georgenia sp. strain 3A-1
prokMSA_id:79056 AB094466 Georgenia sp. 2216.35.28 
2.30.1.10 PROPIONIBACTERIUM_GROUP 85 seqs
2.30.1.10.1 PRP.ACNES_SUBGROUP 4 seqs
2.30.1.10.1.24487 OTU 2 seqs
prokMSA_id:12704 AJ003058 Propionibacterium propionicus DSM 43307
prokMSA_id:12706 AJ003055 Propionibacterium avidum DSM 4901
2.30.1.10.1.24584 OTU 2 seqs
prokMSA_id:12710 AF146370 Propionibacterium acnes str. 76995
prokMSA_id:37428 AB078819 Propionibacteriaceae str. K4 
2.30.1.10.2 PRP.THOENII_SUBGROUP 3 seqs
2.30.1.10.2.19 OTU 1 seq
prokMSA_id:49248 AF234623 Propionibacterium microaerophilus 
2.30.1.10.2.25701 OTU 2 seqs
prokMSA_id:12724 AJ003057 Propionibacterium granulosum DSM 20700
prokMSA_id:33816 AY053481 AT425_EubA8 
2.30.1.10.3 PRP.FREUDENREICHII_SUBGROUP 4 seqs
2.30.1.10.3.16942 OTU 1 seq
prokMSA_id:23815 AF225962 Propionibacterium sp. LCDC-98A072 
2.30.1.10.3.25716 OTU 2 seqs
prokMSA_id:12727 Y10819 Propionibacterium freudenreichii subsp. shermanii str. E11.1
prokMSA_id:12729 AJ009989 Propionibacterium freudenreichii subsp. globosum str. JS53
2.30.1.10.3.6851 OTU 1 seq
prokMSA_id:12728 D82046 Propionibacterium cyclohexanicum
2.30.1.10.5 TSC.BENDIGOENSIS 4 seqs
2.30.1.10.5.42059 OTU 2 seqs
prokMSA_id:17374 AF285117 Propionibacterium propionicus 
prokMSA_id:18155 AJ315953 Propionibacterium propionicus strain DSM 43307T
2.30.1.10.5.684 OTU 1 seq
prokMSA_id:19216 AF287757 Propionibacterium sp. oral clone BN085 
2.30.1.10.5.6873 OTU 1 seq
prokMSA_id:12733 AF038504 Tessaracoccus bendigoensis str. Ben106 ACM 5119
2.30.1.10.6 PRP.LYMPHOPHILUM_SUBGROUP 1 seq
2.30.1.10.6.6875 OTU 1 seq
prokMSA_id:12734 AJ003056 Propionibacterium lymphophilum DSM 4903
2.30.1.10.7 LUT.JAPONICUS_SUBGROUP 3 seqs
2.30.1.10.7.15685 OTU 1 seq
prokMSA_id:47148 AJ132334 Luteococcus sp. CCUG38120 
2.30.1.10.7.31805 OTU 2 seqs
prokMSA_id:12736 D85487 Luteococcus japonicus IFO 12422
prokMSA_id:12737 Z78208 Luteococcus japonicus DSM 10546
2.30.1.10.9 MCL.PHOSPHOVORUS_SUBGROUP 14 seqs
2.30.1.10.9.15467 OTU 1 seq
prokMSA_id:68737 AF479364 Glacial ice SB12K-2-7 
2.30.1.10.9.17408 OTU 1 seq
prokMSA_id:48003 AF281118 sp. sbr-gs28 
2.30.1.10.9.19068 OTU 1 seq
prokMSA_id:31964 AB078817 Actinobacterium K2 
2.30.1.10.9.26591 OTU 2 seqs
prokMSA_id:12741 Z78206 Friedmanniella antarctica str. AA-1042 DSM 11053
prokMSA_id:12742 AF062535 Friedmanniella spumicola str. Ben 107 ACM 5121
2.30.1.10.9.26597 OTU 2 seqs
prokMSA_id:12743 AF084529 Friedmanniella capsulatus str. Ben 108; J47 ACM 5120
prokMSA_id:47043 AJ132943 Friedmanniella sp. EL-17a 
2.30.1.10.9.32044 OTU 2 seqs
prokMSA_id:12753 AJ229243 str. VeSm15
prokMSA_id:82323 AY211075 actinobacterium clone VC20 
2.30.1.10.9.41056 OTU 3 seqs
prokMSA_id:19175 AB078820 Actinobacterium K5 
prokMSA_id:23881 AB078835 Actinobacterium W1 
prokMSA_id:47074 AB078858 Actinobacterium Wd 
2.30.1.10.9.6949 OTU 1 seq
prokMSA_id:12751 AB012607 str. Lg2
2.30.1.10.9.6952 OTU 1 seq
prokMSA_id:12752 AJ224541 str. clone koll13
2.30.1.10.10 ARMB.FASTIDIOSUM_SUBGROUP 5 seqs
2.30.1.10.10.26759 OTU 5 seqs
prokMSA_id:12756 Z78209 Aeromicrobium fastidiosum DSM 10552
prokMSA_id:12757 X76179 Nocardioides sp. NCFB 3007
prokMSA_id:12758 X76178 Nocardioides sp. NCFB 3005
prokMSA_id:12760 AF005021 Aeromicrobium erythreum NRRL B-3381
prokMSA_id:39886 AF005022 Aeromicrobium fastidiosum 
2.30.1.10.11 NCR.ALBUS_SUBGROUP 44 seqs
2.30.1.10.11.11495 OTU 1 seq
prokMSA_id:75390 AY027587 Nocardioides sp. 4P1-A 
2.30.1.10.11.16330 OTU 1 seq
prokMSA_id:16538 AF210769 Nocardioides sp. CF8 
2.30.1.10.11.16729 OTU 1 seq
prokMSA_id:32247 Y18629 Marmoricola aurantiacus 
2.30.1.10.11.18358 OTU 1 seq
prokMSA_id:61958 AJ244655 Nocardioides sp. V4.BO.15 
2.30.1.10.11.26263 OTU 2 seqs
prokMSA_id:12785 Z78210 Nocardioides jensenii DSM 20641
prokMSA_id:74690 AF005006 Nocardioides jensenii 
2.30.1.10.11.26804 OTU 2 seqs
prokMSA_id:12762 X90830 Nocardioides sp. str. EL-17 lawson
prokMSA_id:12763 X94145 Nocardioides sp
2.30.1.10.11.33296 OTU 25 seqs
prokMSA_id:12789 AF004988 Nocardioides albus KCTC 9186
prokMSA_id:12794 X86618 Nocardioides sp. str. 30-71
prokMSA_id:12796 X86620 Nocardioides sp. str. 80-83
prokMSA_id:23823 AF005007 Nocardioides luteus 
prokMSA_id:24003 AF004989 Nocardioides albus 
prokMSA_id:25935 AF005004 Nocardioides albus 
prokMSA_id:26246 AF004996 Nocardioides albus 
prokMSA_id:27416 AF004992 Nocardioides albus 
prokMSA_id:29505 AF004993 Nocardioides albus 
prokMSA_id:31018 AF004999 Nocardioides albus 
prokMSA_id:34255 AF004995 Nocardioides albus 
prokMSA_id:35067 AF004997 Nocardioides albus 
prokMSA_id:35182 AF004991 Nocardioides albus 
prokMSA_id:38492 AF005000 Nocardioides albus 
prokMSA_id:38858 AF004998 Nocardioides albus 
prokMSA_id:43015 AF005002 Nocardioides albus 
prokMSA_id:44064 AF005015 Nocardioides flavus 
prokMSA_id:44488 AF005003 Nocardioides albus 
prokMSA_id:45362 AF005014 Nocardioides flavus 
prokMSA_id:45925 AF005001 Nocardioides albus 
prokMSA_id:46696 AF005016 Nocardioides fulvus 
prokMSA_id:48672 AF005005 Nocardioides albus 
prokMSA_id:74487 AF004994 Nocardioides albus 
prokMSA_id:74703 AF004990 Nocardioides albus 
prokMSA_id:77241 AY148082 Nocardioides sp. EN47 
2.30.1.10.11.41373 OTU 5 seqs
prokMSA_id:12768 U61298 Nocardioides sp. str. OS4
prokMSA_id:21031 AF465213 Nocardioides sp. JS884 
prokMSA_id:52736 AF253510 Nocardioides sp. C190 
prokMSA_id:60763 AF498652 Nocardioides sp. JS614 
prokMSA_id:60989 AF529063 Nocardioides aquiterrae strain GW-9 
2.30.1.10.11.4525 OTU 1 seq
prokMSA_id:34725 AJ316318 Nocardioides sp. LMG 20237 strain LMG 20237
2.30.1.10.11.6981 OTU 1 seq
prokMSA_id:12761 AF005008 Nocardioides plantarum str. Grainger J70 NCIMB 12834
2.30.1.10.11.7001 OTU 1 seq
prokMSA_id:12770 U27857 clone Nb
2.30.1.10.11.7041 OTU 1 seq
prokMSA_id:12799 U27856 clone FJ21A
2.30.1.10.11.7040 OTU 1 seq
prokMSA_id:12798 M37693 Nocardioides simplex ATCC 6946
2.30.1.10.11.8298 OTU 1 seq
prokMSA_id:44269 AF253509 Nocardioides sp. C157 
2.30.1.10.12 KRIBBELLA_SUBGROUP 3 seqs
2.30.1.10.12.14876 OTU 1 seq
prokMSA_id:45777 AF237815 Actinosingapura polymorpha 
2.30.1.10.12.7581 OTU 1 seq
prokMSA_id:12803 Y09159 Hongia koreensis str. LM 161T =IMSNU 50530T
2.30.1.10.12.93 OTU 1 seq
prokMSA_id:55832 AY082063 Nocardioides sp. YIM31530 
2.30.1.11 MICROMONOSPORA_GROUP 189 seqs
2.30.1.11.2 PLM.TEREVASA_SUBGROUP 4 seqs
2.30.1.11.2.35084 OTU 4 seqs
prokMSA_id:12807 X93189 Pilimelia anulata DSM 43039
prokMSA_id:12808 X93190 Pilimelia terevasa DSM 43040
prokMSA_id:12809 D86946 Pilimelia terevasa IFO 15964
prokMSA_id:72263 D86946 Pilimelia terevasa strain IFO15964 
2.30.1.11.3 APL.PHILIPPINENSIS_SUBGROUP 11 seqs
2.30.1.11.3.12554 OTU 1 seq
prokMSA_id:53290 AY033296 actinobacterium MB11A03 and 23S genes 
2.30.1.11.3.13891 OTU 1 seq
prokMSA_id:60634 AF406542 firmicute clone AEGEAN_193 
2.30.1.11.3.13889 OTU 1 seq
prokMSA_id:60632 AF406543 firmicute clone AEGEAN_163 
2.30.1.11.3.21645 OTU 1 seq
prokMSA_id:72061 AF406530 gamma clone AEGEAN_195 
2.30.1.11.3.27258 OTU 2 seqs
prokMSA_id:12813 AF001652 clone OCS155
prokMSA_id:54456 AY033302 actinobacterium MB11C06 and 23S genes 
2.30.1.11.3.41572 OTU 4 seqs
prokMSA_id:12810 X93187 Actinoplanes philippinensis DSM 43019
prokMSA_id:12811 D85474 Actinoplanes philippinensis IFO 13878
prokMSA_id:12815 U58525 Actinoplanes philippinensis ATCC 12427
prokMSA_id:71458 D85474 Actinoplanes philippinensis strain IFO13878 
2.30.1.11.3.7634 OTU 1 seq
prokMSA_id:12817 AB013495 Actinoplanes capillaceus str. K95-5561
2.30.1.11.4 APL.UTAHENSIS_SUBGROUP 18 seqs
2.30.1.11.4.38325 OTU 3 seqs
prokMSA_id:12820 X93188 Actinoplanes regularis DSM 43151
prokMSA_id:45208 AB047496 Actinoplanes kinshanensis 
prokMSA_id:49393 AB047502 Actinoplanes regularis 
2.30.1.11.4.39191 OTU 12 seqs
prokMSA_id:17385 AJ277576 Actinoplanes ianthinogenes strain IMSNU 20032
prokMSA_id:19569 AJ277579 Actinoplanes liguriae strain IMSNU 22127
prokMSA_id:24564 AJ277577 Actinoplanes kinshanensis strain IMSNU 20034
prokMSA_id:29970 AB047495 Actinoplanes ianthinogenes 
prokMSA_id:31041 AB037010 Actinoplanes rectilineatus complete 
prokMSA_id:34180 AB047494 Actinoplanes ianthinogenes subsp. octamycini 
prokMSA_id:40835 AB047492 Actinoplanes awajinensis subsp. mycoplanecinus 
prokMSA_id:41503 AB037011 Actinoplanes regularis 
prokMSA_id:42133 AB047497 Actinoplanes liguriae 
prokMSA_id:48199 AB037009 Actinoplanes palleronii complete 
prokMSA_id:49449 AB048216 Actinoplanes palleronii 
prokMSA_id:75832 AJ277573 Actinoplanes palleronii strain IMSNU 20038T
2.30.1.11.4.41093 OTU 3 seqs
prokMSA_id:17991 AB047506 Actinoplanes sp. IFO 13943 
prokMSA_id:18871 AB047499 Actinoplanes philippinensis 
prokMSA_id:39832 AJ277578 Actinoplanes pallidoaurantiacus strain IMSNU 22128
2.30.1.11.5 CATENULOPLANES_SUBGROUP 9 seqs
2.30.1.11.5.2 GM.TENUIS_SUBGROUP 6 seqs
2.30.1.11.5.2.27512 OTU 3 seqs
prokMSA_id:12832 D85483 Glycomyces harbinensis str. LL-DO5139 IFO 14487
prokMSA_id:33446 AJ293747 Glycomyces harbinensis strain IMSNU 20070T
prokMSA_id:42225 AJ293748 Glycomyces rutgersensis strain IMSNU 22074T
2.30.1.11.5.2.576 OTU 1 seq
prokMSA_id:64356 AY113684 Catenuloplanes sp. SS-3 
2.30.1.11.5.2.7670 OTU 1 seq
prokMSA_id:12829 AB024701 Planopolyspora crispa JCM 9312
2.30.1.11.5.2.7685 OTU 1 seq
prokMSA_id:12831 D85482 Glycomyces tenuis IFO 15904
2.30.1.11.5.3 CCP.CAERULEUS_SUBGROUP 3 seqs
2.30.1.11.5.3.29161 OTU 2 seqs
prokMSA_id:38986 AB037003 Actinoplanes globisporus 
prokMSA_id:52031 AB048219 Actinoplanes globisporus 
2.30.1.11.5.3.7273 OTU 1 seq
prokMSA_id:44122 AJ277565 Actinoplanes deccanensis strain IMSNU 20026T
2.30.1.11.6 SP.YAMANASHIENSIS 2 seqs
2.30.1.11.6.27531 OTU 2 seqs
prokMSA_id:12839 D63912 Spirilliplanes yamanashiensis str. YU127-1 IFO 15828
prokMSA_id:70178 D63912 Spirilliplanes yamanashiensis strain IFO 15828 
2.30.1.11.8 MMS.OLIVASTEROSPORA_SUBGROUP 1 seq
2.30.1.11.8.8340 OTU 1 seq
prokMSA_id:44279 AF171700 Catellatospora koreensis 
2.30.1.11.9 MMS.ECHINOSPORA_SUBGROUP 6 seqs
2.30.1.11.9.5302 OTU 1 seq
prokMSA_id:58318 AF543499 clone ASL8 
2.30.1.11.9.7743 OTU 1 seq
prokMSA_id:12852 X92598 Micromonospora coerulea DSM 43143
2.30.1.11.9.7774 OTU 1 seq
prokMSA_id:12861 X92706 clone TM214
2.30.1.11.9.7780 OTU 1 seq
prokMSA_id:12865 X92631 Micromonospora rosaria DSM 803
2.30.1.11.9.7812 OTU 1 seq
prokMSA_id:12876 L11306 Frankia sp. str. G48
2.30.1.11.9.8856 OTU 1 seq
prokMSA_id:52136 AJ277584 Actinoplanes teichomyceticus strain IMSNU 20043
2.30.1.11.10 MMS.CARBONACEA_SUBGROUP 2 seqs
2.30.1.11.10.12175 OTU 1 seq
prokMSA_id:37529 AB047513 Actinoplanes teichomyceticus 
2.30.1.11.10.7833 OTU 1 seq
prokMSA_id:12880 AF068056 Micromonospora Y10 str. Y10
2.30.1.11.11 CTL.FERRUGINEA 3 seqs
2.30.1.11.11.16965 OTU 1 seq
prokMSA_id:78090 AJ294715 Catellatospora ishikariense strain IMSNU 22004
2.30.1.11.11.24743 OTU 2 seqs
prokMSA_id:12886 X93199 Catellatospora ferruginea DSM 44099
prokMSA_id:38053 AF152108 Catellatospora ferruginea 
2.30.1.11.12 CTL.CITREA_SUBGROUP 9 seqs
2.30.1.11.12.27795 OTU 7 seqs
prokMSA_id:12887 X93198 Catellatospora citrea DSM 44098
prokMSA_id:12888 D85477 Catellatospora citrea subsp. citrea IFO 14495
prokMSA_id:12889 X93197 Catellatospora citrea subsp. citrea DSM 44097
prokMSA_id:34467 Y09219 Catellatospora sp
prokMSA_id:35366 AF152106 Catellatospora citrea subsp. citrea 
prokMSA_id:46148 AF152107 Catellatospora citrea subsp. methionotrophica 
prokMSA_id:74352 D85477 Catellatospora citrea strain IFO14495 
2.30.1.11.12.32268 OTU 2 seqs
prokMSA_id:12890 X93200 Catellatospora tsunoense DSM 44101
prokMSA_id:42584 AF152110 Catellatospora tsunoense 
2.30.1.11.13 DCT.AURANTIACUM_SUBGROUP 5 seqs
2.30.1.11.13.30338 OTU 4 seqs
prokMSA_id:28171 AB006169 Virgosporangium aurantiacum strain:YU438-5
prokMSA_id:34942 AB006162 Virgosporangium ochraceum strain:YU793-41
prokMSA_id:37925 AB006161 Virgosporangium ochraceum strain:YU794-41
prokMSA_id:52890 AB006167 Virgosporangium ochraceum strain:YU655-43
2.30.1.11.13.8449 OTU 1 seq
prokMSA_id:12902 X92630 Dactylosporangium thailandense DSM 43158
2.30.1.11.99 VARIOUS 119 seqs
2.30.1.11.99.33308 OTU 6 seqs
prokMSA_id:22701 AJ277569 Actinoplanes ferrugineus strain IMSNU 22125T
prokMSA_id:30667 AB048221 Actinoplanes ferrugineus 
prokMSA_id:41171 AB037002 Actinoplanes ferrugineus 
prokMSA_id:43093 AJ277568 Actinoplanes durhamensis strain IMSNU 22124T
prokMSA_id:51187 AB048215 Actinoplanes durhamensis 
prokMSA_id:52957 AB037001 Actinoplanes durhamensis 
2.30.1.11.99.34758 OTU 28 seqs
prokMSA_id:12891 D86939 Dactylosporangium vinaceum IFO 14181
prokMSA_id:12892 U58528 Dactylosporangium aurantiacum str. D-748 ATCC 23491
prokMSA_id:12893 D86941 Dactylosporangium roseum IFO 14352
prokMSA_id:12895 D85480 Dactylosporangium aurantiacum str. D-748 IFO 12592
prokMSA_id:12896 X93195 Dactylosporangium "salmoneum" DSM 43910
prokMSA_id:12897 D86938 Dactylosporangium "salmoneum" IFO 14103
prokMSA_id:12898 D86942 Dactylosporangium fulvum IFO 14381
prokMSA_id:12899 U58529 Dactylosporangium roseum IFO 14352
prokMSA_id:12900 X93193 Dactylosporangium matsuzakiense DSM 43810
prokMSA_id:12901 D85481 Dactylosporangium thailandense IFO 12593
prokMSA_id:12903 X93194 Dactylosporangium roseum DSM 43916
prokMSA_id:12904 D86940 Dactylosporangium matsuzakiense IFO 14259
prokMSA_id:12905 X93191 Dactylosporangium aurantiacum str. D-748 DSM 43157
prokMSA_id:12906 X93196 Dactylosporangium vinaceum DSM 43823
prokMSA_id:12907 X93192 Dactylosporangium fulvum DSM 43917
prokMSA_id:26254 AB017374 Actinomycete SF2809 complete 
prokMSA_id:55498 AY040617 Salinospora sp. CNH440 
prokMSA_id:59317 AY040619 Salinospora sp. CNH643 
prokMSA_id:59318 AY040623 Salinospora sp. CNH964 
prokMSA_id:59320 AY040622 Salinospora sp. CNH898 
prokMSA_id:59321 AY040621 Salinospora sp. CNH725 
prokMSA_id:59322 AY040620 Salinospora sp. CNH646 
prokMSA_id:59323 AY040618 Salinospora sp. CNH536 
prokMSA_id:70854 D86939 Dactylosporangium vinaceum strain IFO14181 
prokMSA_id:71488 D86941 Dactylosporangium roseum strain IFO14352 
prokMSA_id:73448 D85481 Dactylosporangium thailandense strain IFO12593 
prokMSA_id:73463 D85480 Dactylosporangium auranticum strain IFO12592 
prokMSA_id:73995 D86942 Dactylosporangium fulvum strain IFO14381 
2.30.1.11.99.39079 OTU 4 seqs
prokMSA_id:23680 AJ277567 Actinoplanes digitatis strain IMSNU 22123T
prokMSA_id:37247 AB047504 Actinoplanes rutilosporangius 
prokMSA_id:39135 AB047489 Actinoplanes arizonaensis 
prokMSA_id:44805 AB047507 Actinoplanes sp. IFO 13944 
2.30.1.11.99.40828 OTU 8 seqs
prokMSA_id:12834 X93185 Actinoplanes brasiliensis DSM 43805
prokMSA_id:17380 AB047516 Actinoplanes yunnanensis 
prokMSA_id:27800 AJ277586 Actinoplanes violaceus strain IMSNU 22136
prokMSA_id:40127 AB047491 Actinoplanes auranticolor 
prokMSA_id:41400 AB037008 Actinoplanes missouriensis 
prokMSA_id:46296 AB047511 Actinoplanes sp. IFO 14428 
prokMSA_id:49242 AB047498 Actinoplanes nipponensis 
prokMSA_id:51864 AB047515 Actinoplanes violaceus 
2.30.1.11.99.41405 OTU 8 seqs
prokMSA_id:12818 X93186 Actinoplanes cyaneus DSM 46137
prokMSA_id:12819 X87322 str. SR 83
prokMSA_id:12821 X80823 Actinoplanes utahensis str. Bayer AG SE50/110 ATCC 31044
prokMSA_id:21002 AB036997 Actinoplanes cyaneus 
prokMSA_id:27565 AB047493 Actinoplanes garbadinensis 
prokMSA_id:33156 AJ277580 Actinoplanes penicillatus strain IMSNU 22129
prokMSA_id:37443 AJ277575 Actinoplanes garbadinensis strain IMSNU 20040
prokMSA_id:78124 AJ294717 Catenuloplanes indicus strain IMSNU 22099T
2.30.1.11.99.41629 OTU 32 seqs
prokMSA_id:12841 X92613 Micromonospora olivasterospora str. MK70 DSM 43868
prokMSA_id:12842 X92603 Micromonospora peucetica str. DSM 43363 strain
prokMSA_id:12843 X92611 Micromonospora purpureochromogenes DSM 43821
prokMSA_id:12844 X92602 Micromonospora narashino str. DSM 43172
prokMSA_id:12845 X92616 Micromonospora brunnescens str. DSM 43902 strain
prokMSA_id:12847 X92615 Micromonospora globosa str. DSM 43893
prokMSA_id:12849 X92628 Micromonospora chersinia DSM 44151
prokMSA_id:12850 X92617 Micromonospora citrea str. DSM 43903
prokMSA_id:12851 X92625 Micromonospora echinobrunnea str. DSM 43913
prokMSA_id:12854 X92620 Micromonospora fulviviridis str. DSM 43906
prokMSA_id:12855 X92604 Micromonospora aurantiaca DSM 43813
prokMSA_id:12856 AJ245712 Micromonospora aurantiaca str. W2b
prokMSA_id:12857 X92627 Micromonospora fulvopurpureus str. DSM 43918
prokMSA_id:12858 X92600 Micromonospora globosa str. DSM 43170
prokMSA_id:12859 X92622 Micromonospora lacustris str. DSM 43908
prokMSA_id:12860 X92594 Micromonospora chalcea DSM 43026
prokMSA_id:12862 D85489 Micromonospora chalcea IFO 12135
prokMSA_id:12863 U58531 Micromonospora chalcea ATCC 12452
prokMSA_id:12864 X92605 Micromonospora brunnea DSM 43814
prokMSA_id:12867 X92610 Micromonospora inositola DSM 43819
prokMSA_id:12868 X92609 Micromonospora halophytica subsp. nigra DSM 43818
prokMSA_id:12872 X92618 Micromonospora echinoaurantiaca str. DSM 44390
prokMSA_id:12874 X92595 Micromonospora purpurea DSM 43036
prokMSA_id:12875 X92596 Micromonospora melanospora str. DSM 43126
prokMSA_id:12878 X92623 Micromonospora viridifaciens str. DSM 43909
prokMSA_id:12882 X92619 Micromonospora fulvoviolaceus str. DSM 43905
prokMSA_id:12883 X92621 Micromonospora floridensis str. DSM 43907
prokMSA_id:12884 X87321 str. SR 53
prokMSA_id:42214 AF367587 Micromonospora sp. 0138 
prokMSA_id:56010 AY040624 Micromonospora sp. CNH512 
prokMSA_id:59319 AY040625 Micromonospora sp. CNH394 
prokMSA_id:68757 AF479344 Glacial ice G200-C39 
2.30.1.11.99.41657 OTU 3 seqs
prokMSA_id:12828 X93201 Catenuloplanes japonicus DSM 44102
prokMSA_id:12830 D85476 Catenuloplanes japonicus IFO 14176
prokMSA_id:36834 AB047508 Actinoplanes sp. IFO 14066 
2.30.1.11.99.41696 OTU 8 seqs
prokMSA_id:12836 D85479 Couchioplanes caeruleus subsp. caeruleus IFO 13939
prokMSA_id:19482 AB048213 Actinoplanes digitatis 
prokMSA_id:23936 AB037004 Actinoplanes humidus complete 
prokMSA_id:24528 AB037000 Actinoplanes digitatis 
prokMSA_id:39010 AB036996 Actinoplanes consettensis 
prokMSA_id:51111 AB048214 Actinoplanes consettensis 
prokMSA_id:52270 AJ277571 Actinoplanes humidus strain IMSNU 22051T
prokMSA_id:64357 AY113685 Actinoplanes sp. YM-3 
2.30.1.11.99.41700 OTU 5 seqs
prokMSA_id:12837 X93202 Catenuloplanes caeruleus subsp. azureus DSM 44103
prokMSA_id:12838 D85478 Couchioplanes caeruleus subsp. azureus IFO 13993
prokMSA_id:12840 Y15523 Verrucosispora gifhornensis str. HR1-2 DSM 44337
prokMSA_id:23551 AB036998 Actinoplanes deccanensis 
prokMSA_id:77587 AJ294716 Catenuloplanes atrovinosus strain IMSNU 22012T
2.30.1.11.99.42011 OTU 8 seqs
prokMSA_id:12848 X92601 Micromonospora halophytica subsp. halophytica
prokMSA_id:12853 X92607 Micromonospora echinospora subsp. echinospora DSM 43816
prokMSA_id:12866 X92612 Micromonospora rhodorangea DSM 43822
prokMSA_id:12870 X92597 Micromonospora echinospora subsp. ferruginea DSM 43141
prokMSA_id:12871 X92624 Micromonospora sagamiensis subsp. sagamiensis str. DSM 43912
prokMSA_id:12877 X92608 Micromonospora echinospora subsp. pallida DSM 43817
prokMSA_id:12879 X92599 Micromonospora carbonacea subsp. carbonacea DSM 43168
prokMSA_id:12885 X92606 Micromonospora carbonacea subsp. aurantiaca
2.30.1.11.99.42114 OTU 6 seqs
prokMSA_id:20207 AJ277574 Actinoplanes utahensis strain IMSNU 20044T
prokMSA_id:24733 AB048217 Actinoplanes italicus 
prokMSA_id:26230 AB037005 Actinoplanes italicus complete 
prokMSA_id:32651 AB036999 Actinoplanes derwentensis 
prokMSA_id:51035 AB048218 Actinoplanes derwentensis 
prokMSA_id:51900 AB037012 Actinoplanes utahensis 
2.30.1.11.99.42197 OTU 3 seqs
prokMSA_id:12873 X92629 Micromonospora inyoensis str. DSM 46123
prokMSA_id:12881 X92626 Micromonospora yulongensis str. DSM 43915
prokMSA_id:44843 AF152109 Micromonospora matsumotoense 
2.30.1.12 SACCHAROPOLYSPORA_GROUP 168 seqs
2.30.1.12.1 PSC.HALOPHOBICA_SUBGROUP 25 seqs
2.30.1.12.1.10837 OTU 1 seq
prokMSA_id:44587 AJ252830 Pseudonocardia thermophila strain IMSNU 20112T
2.30.1.12.1.12474 OTU 1 seq
prokMSA_id:46023 AF234127 #0319-6A24 
2.30.1.12.1.13183 OTU 1 seq
prokMSA_id:30436 AJ252833 Soil strain LM 157 
2.30.1.12.1.19670 OTU 1 seq
prokMSA_id:18239 AF325728 Actinobispora xinjiangensis 
2.30.1.12.1.310 OTU 1 seq
prokMSA_id:42025 AJ249206 Pseudonocardia spinospora isolate LM 141T
2.30.1.12.1.33392 OTU 4 seqs
prokMSA_id:12922 Y08535 Pseudonocardia alni str. 3LS DSM 44104
prokMSA_id:17516 AJ252823 Pseudonocardia alni strain IMSNU 20049T
prokMSA_id:43762 AJ252824 Pseudonocardia autotrophica strain IMSNU 20050T
prokMSA_id:51374 AJ252825 Pseudonocardia compacta strain IMSNU 20111T
2.30.1.12.1.33761 OTU 5 seqs
prokMSA_id:12927 Y08534 Pseudonocardia halophobica DSM 43089
prokMSA_id:12930 Y08537 Pseudonocardia sulfidoxydans str. 592 DSM 44248
prokMSA_id:18128 AF378364 Pseudonocardia sulfidoxydans 
prokMSA_id:18313 AJ252826 Pseudonocardia hydrocarbonoxydans strain IMSNU 22140T
prokMSA_id:20264 AJ252827 Pseudonocardia halophobica strain IMSNU 21327T
2.30.1.12.1.35182 OTU 7 seqs
prokMSA_id:12916 D85472 Actinobispora yunnanensis IFO 15681
prokMSA_id:17003 AF325726 Actinobispora alaniniphila 
prokMSA_id:22784 AF234120 #0649-1I18 
prokMSA_id:27130 AF325727 Actinobispora aurantiaca 
prokMSA_id:31830 AJ252822 Actinobispora yunnanensis strain IMSNU 22019T
prokMSA_id:50638 AF325725 Pseudonocardia zijingensis 
prokMSA_id:66811 AF454510 Pseudonocardia chlorethenivorans 
2.30.1.12.1.4739 OTU 1 seq
prokMSA_id:51028 AJ252829 Pseudonocardia saturnea strain IMSNU 20052T
2.30.1.12.1.8515 OTU 1 seq
prokMSA_id:12923 X87314 str. SR 244a
2.30.1.12.1.8528 OTU 1 seq
prokMSA_id:12926 Y08536 Pseudonocardia asaccharolytica str. 580 DSM 44247
2.30.1.12.1.8737 OTU 1 seq
prokMSA_id:35860 AF465644 Actinobacterium YNPRH1P-1 
2.30.1.12.2 KIB.ARIDUM_SUBGROUP 1 seq
2.30.1.12.2.8568 OTU 1 seq
prokMSA_id:12936 X53190 Kibdelosporangium aridum subsp. aridum
2.30.1.12.3 SCP.HIRSUTA_SUBGROUP 12 seqs
2.30.1.12.3.42293 OTU 4 seqs
prokMSA_id:32595 AJ318409 Mobiluncus curtisii subsp. holmesii strain CCUG 17762T
prokMSA_id:36897 AJ318408 Mobiluncus curtisii subsp. curtisii strain CCUG 21018
prokMSA_id:78008 AJ427623 Mobiluncus curtisii subsp. curtisii strain CCUG 21018T
prokMSA_id:78135 AJ427624 Mobiluncus curtisii subsp. holmesii strain CCUG 17762T
2.30.1.12.3.465 OTU 1 seq
prokMSA_id:41449 AY015427 Actinopolyspora indiensis 
2.30.1.12.3.8590 OTU 1 seq
prokMSA_id:12940 AF002818 Saccharopolyspora spinosa str. A83543.1 DSM 44228
2.30.1.12.3.8596 OTU 1 seq
prokMSA_id:12942 AF154128 Saccharopolyspora flava str. AS4.1520T
2.30.1.12.3.8593 OTU 1 seq
prokMSA_id:12941 AF127526 Saccharopolyspora thermophilus str. str216
2.30.1.12.3.8600 OTU 1 seq
prokMSA_id:12943 AF002819 Saccharopolyspora taberi str. LL-WRAT-210 DSM 43856
2.30.1.12.3.8603 OTU 1 seq
prokMSA_id:12944 U93341 Saccharopolyspora hirsuta subsp. hirsuta ATCC 27875
2.30.1.12.3.8628 OTU 1 seq
prokMSA_id:12950 Z22730 Actinopolyspora mortivallis JCM 7550
2.30.1.12.3.8635 OTU 1 seq
prokMSA_id:12952 X54287 Actinopolyspora halophila
2.30.1.12.4 SCT.AUSTRALIENSIS_SUBGROUP 56 seqs
2.30.1.12.4.10676 OTU 1 seq
prokMSA_id:45191 AB058396 Actinokineospora auranticolor 
2.30.1.12.4.20740 OTU 1 seq
prokMSA_id:47825 AB048864 Actinokineospora sp. YU 923-201 
2.30.1.12.4.21206 OTU 1 seq
prokMSA_id:63557 AY117436 Lentzea albida strain 37-28 
2.30.1.12.4.21205 OTU 1 seq
prokMSA_id:63556 AY117437 Lentzea albida strain 45-22 
2.30.1.12.4.2178 OTU 1 seq
prokMSA_id:33829 AB058395 Actinokineospora enzanensis 
2.30.1.12.4.27723 OTU 4 seqs
prokMSA_id:12979 AF114797 Actinokineospora diospyrosa NRRL B-24047
prokMSA_id:12996 AF114798 Actinokineospora globicatena NRRL B-24048
prokMSA_id:35192 AB048863 Actinokineospora sp. YU 873-1 
prokMSA_id:40462 AB058394 Actinokineospora terrae 
2.30.1.12.4.29198 OTU 2 seqs
prokMSA_id:12988 AF114806 NRRL B-16238
prokMSA_id:41579 AF245017 Crossiella equi 
2.30.1.12.4.29689 OTU 2 seqs
prokMSA_id:12986 D85475 Actinosynnema mirum IFO 14064
prokMSA_id:70383 D85475 Actinosynnema mirum strain IFO14064 
2.30.1.12.4.33324 OTU 7 seqs
prokMSA_id:12958 AF114811 Saccharothrix NRRL B-16133 NRRL B-16133
prokMSA_id:12959 AF114807 Saccharothrix espanaensis NRRL 15764
prokMSA_id:12963 AF114805 Saccharothrix coeruleofusca NRRL B-16115
prokMSA_id:12970 AF114815 Saccharothrix texasensis NRRL B-16107
prokMSA_id:12971 AF114814 Saccharothrix texasensis NRRL B-16134
prokMSA_id:12973 AF114812 Saccharothrix syringae NRRL B-16468
prokMSA_id:12974 AF114810 Saccharothrix NRRL B-16108 NRRL B-16108
2.30.1.12.4.34913 OTU 11 seqs
prokMSA_id:12965 X84321 Lentzea albidocapillata str. IMMIB D-958 DSM 44073
prokMSA_id:12966 Y09158 Lentzea koreensis str. LM 121T =IMSNU 50711T
prokMSA_id:12968 AF183958 unnamed organism
prokMSA_id:12972 AF114813 Saccharothrix waywayandensis NRRL B-16159
prokMSA_id:12981 AB006176 Asiosporangium albidum IFO 16102
prokMSA_id:12982 AB020029 Saccharothrix waywayandensis JCM 9114
prokMSA_id:12985 AB024287 Saccharothrix aerocolonigenes subsp. staurosporea JCM 9734
prokMSA_id:30376 AJ242634 Saccharothrix violacea strain LM 044
prokMSA_id:33070 AF174435 Saccharothrix aerocolonigenes strain NRRL B-16137 
prokMSA_id:46572 AJ242633 Saccharothrix violacea strain LM 036T
prokMSA_id:63345 AY114176 Lentzea flaviverrucosa strain AS 4.0463 
2.30.1.12.4.35681 OTU 11 seqs
prokMSA_id:12960 AF114803 Saccharothrix australiensis str. LL-BM782Ce8 NRRL 11239
prokMSA_id:60450 AY054972 Saccharothrix algeriensis 
prokMSA_id:63693 AF328418 Saccharothrix sp. 98-41-281A complete 
prokMSA_id:63694 AF328417 Saccharothrix sp. 98-41-338A complete 
prokMSA_id:63695 AF328416 Saccharothrix sp. 98-41-143A complete 
prokMSA_id:63696 AF328415 Saccharothrix sp. 98-10-099A complete 
prokMSA_id:69794 AF361323 Saccharothrix sp. 99-08-211A complete 
prokMSA_id:70369 AF328413 Saccharothrix sp. 99-08-222A complete 
prokMSA_id:70891 AF328412 Saccharothrix sp. 99-08-221A complete 
prokMSA_id:71267 AF361324 Saccharothrix sp. 99-08-243A complete 
prokMSA_id:73943 AF328414 Saccharothrix sp. 99-08-236A complete 
2.30.1.12.4.42601 OTU 4 seqs
prokMSA_id:12977 AF114804 Saccharothrix aerocolonigenes NRRL B-3298
prokMSA_id:12983 AB020030 Saccharothrix aerocolonigenes subsp. aerocolonigenes ISP 503
prokMSA_id:25805 AF174436 Saccharothrix aerocolonigenes strain NRRL B-16139 
prokMSA_id:81131 AY196703 Lechevalieria aerocolonigenes strain VK-A9 
2.30.1.12.4.48 OTU 1 seq
prokMSA_id:63692 AF361325 Saccharothrix sp. 99-10-550A complete 
2.30.1.12.4.8689 OTU 1 seq
prokMSA_id:12975 AF114809 Saccharothrix longispora NRRL B-116116
2.30.1.12.4.8693 OTU 1 seq
prokMSA_id:12978 AF114800 Actinosynnema pretiosum subsp. pretiosum NRRL B-16060
2.30.1.12.4.8702 OTU 1 seq
prokMSA_id:12980 AF183956 Saccharothrixopsis albidus str. AS4.0423
2.30.1.12.4.8709 OTU 1 seq
prokMSA_id:12984 AB020031 Saccharothrix tangerinus str. MK27-91F2
2.30.1.12.4.8712 OTU 1 seq
prokMSA_id:12987 U58530 Kutzneria viridogrisea JCM 3282
2.30.1.12.4.8724 OTU 1 seq
prokMSA_id:12990 AB006178 Actinoalloteichus cyanogriseus IFO 14455
2.30.1.12.4.8729 OTU 1 seq
prokMSA_id:12992 X70429 Kutzneria viridogrisea DSM 43850
2.30.1.12.4.8732 OTU 1 seq
prokMSA_id:12994 AF114802 Actinokineospora riparia NRRL B-16432
2.30.1.12.4.8733 OTU 1 seq
prokMSA_id:12995 AF114799 Actinokineospora inagensis NRRL B-24050
2.30.1.12.5 AMY.ORIENTALIS_SUBGROUP 55 seqs
2.30.1.12.5.10732 OTU 1 seq
prokMSA_id:37332 AF223354 Amycolatopsis sacchari 
2.30.1.12.5.13137 OTU 1 seq
prokMSA_id:59964 AY129764 Amycolatopsis sp. GY211 
2.30.1.12.5.2361 OTU 1 seq
prokMSA_id:63968 AF466098 Amycolatopsis sp. GY144 
2.30.1.12.5.31090 OTU 2 seqs
prokMSA_id:13006 AF052390 Amycolatopsis thermoflava str. N1165
prokMSA_id:27705 AJ249135 Amycolatopsis methanolica strain IMSNU 20055T
2.30.1.12.5.34337 OTU 13 seqs
prokMSA_id:12998 X77959 Amycolatopsis sp. str. MG 417
prokMSA_id:13002 AF051340 Amycolatopsis alba str. A83850 DSM 44262
prokMSA_id:13003 AF051341 Amycolatopsis coloradensis NRRL 3218
prokMSA_id:23414 AJ278496 Amycolatopsis keratinophila strain DSM 44409T
prokMSA_id:23759 AJ400711 Amycolatopsis orientalis strain IMSNU 20058T
prokMSA_id:25029 AJ400709 Amycolatopsis azurea strain IMSNU 20053T
prokMSA_id:51483 AJ421142 Amycolatopsis coloradensis strain DSM 44225T
prokMSA_id:55883 AJ508237 Amycolatopsis decaplanensis strain DSM 44594T
prokMSA_id:59484 AJ508238 Amycolatopsis nogabecetica strain DSM 44586T
prokMSA_id:59962 AY129769 Amycolatopsis sp. GY293 
prokMSA_id:59965 AY129767 Amycolatopsis sp. GY249 
prokMSA_id:59966 AY129766 Amycolatopsis sp. GY246 
prokMSA_id:59970 AY129760 Amycolatopsis sp. GY080 
2.30.1.12.5.3935 OTU 1 seq
prokMSA_id:13005 AF051343 Amycolatopsis sulphurea DSM 46092
2.30.1.12.5.3938 OTU 1 seq
prokMSA_id:13007 AJ000285 Amycolatopsis sp. str. NT202
2.30.1.12.5.41701 OTU 22 seqs
prokMSA_id:55272 AF466100 Amycolatopsis sp. GY295 
prokMSA_id:55702 AY129756 Amycolatopsis sp. GY053 
prokMSA_id:59481 AJ508241 Amycolatopsis tolypophora strain DSM 44544T
prokMSA_id:59482 AJ508239 Amycolatopsis balhimycetica strain DSM 44591T
prokMSA_id:59483 AJ508240 Amycolatopsis vancoresmycetica strain DSM 44592T
prokMSA_id:59956 AY129777 Amycolatopsis sp. GY311 
prokMSA_id:59958 AY129773 Amycolatopsis sp. GY207 
prokMSA_id:59967 AY129765 Amycolatopsis sp. GY212 
prokMSA_id:59968 AY129762 Amycolatopsis sp. GY116 
prokMSA_id:59974 AY129758 Amycolatopsis sp. GY062 
prokMSA_id:59975 AY129755 Amycolatopsis sp. GY052 
prokMSA_id:63752 AY125600 Amycolatopsis mediterranei strain KCTC 1739T 
prokMSA_id:63971 AF466096 Amycolatopsis sp. GY124 
prokMSA_id:63972 AF466093 Amycolatopsis sp. GY073 
prokMSA_id:63974 AF466092 Amycolatopsis sp. GY055 
prokMSA_id:63976 AF453718 Amycolatopsis sp. GY051 
prokMSA_id:67634 AY083604 Amycolatopsis mediterranei strain F1/24 
prokMSA_id:67635 AY083603 Amycolatopsis mediterranei strain DSM 46095 
prokMSA_id:79251 AY183356 Amycolatopsis pretoriensis 
prokMSA_id:79363 AY184424 Amycolatopsis mediterranei strain NRRL B-3240 
prokMSA_id:79423 AY183358 Amycolatopsis lexingtonensis 
prokMSA_id:79479 AY183357 Amycolatopsis kentuckyensis 
2.30.1.12.5.42472 OTU 9 seqs
prokMSA_id:55691 AY129776 Amycolatopsis sp. GY131 
prokMSA_id:59959 AY129772 Amycolatopsis sp. GY286 
prokMSA_id:59960 AY129770 Amycolatopsis sp. GY269 
prokMSA_id:59961 AY129771 Amycolatopsis sp. GY276 
prokMSA_id:59971 AY129759 Amycolatopsis sp. GY064 
prokMSA_id:59976 AY129757 Amycolatopsis sp. GY056 
prokMSA_id:59977 AY129754 Amycolatopsis sp. GY049 
prokMSA_id:59978 AY129753 Amycolatopsis sp. GY048 
prokMSA_id:63975 AF466094 Amycolatopsis sp. GY109 
2.30.1.12.5.42830 OTU 2 seqs
prokMSA_id:63970 AF466097 Amycolatopsis sp. GY142 
prokMSA_id:63973 AF453717 Amycolatopsis sp. GY024 
2.30.1.12.5.5748 OTU 1 seq
prokMSA_id:49974 AF214482 Streptomyces lactamdurans 
2.30.1.12.5.7073 OTU 1 seq
prokMSA_id:35684 AJ252832 Amycolatopsis albidoflavus strain IMSNU 22139T
2.30.1.12.6 SCM.VIRIDIS_SUBGROUP 6 seqs
2.30.1.12.6.21948 OTU 1 seq
prokMSA_id:19135 AJ278497 Saccharomonospora halophila strain DSM 44411T
2.30.1.12.6.31093 OTU 4 seqs
prokMSA_id:13013 Z38021 Saccharomonospora viridis str. K191; Greiner-Mai R25
prokMSA_id:13017 Z38005 Saccharomonospora viridis str. SB-33
prokMSA_id:13019 Z38007 Saccharomonospora viridis str. K73 NCIMB 9602
prokMSA_id:13020 AF127525 Saccharomonospora thermoviridis str. str22.1
2.30.1.12.6.3970 OTU 1 seq
prokMSA_id:13016 AF051342 Prauserella rugosa DSM 43194
2.30.1.12.99 VARIOUS 13 seqs
2.30.1.12.99.34639 OTU 13 seqs
prokMSA_id:13010 Z38020 Saccharomonospora sp. str. K180; 30Urbakt
prokMSA_id:13011 Z38022 Saccharomonospora caesia str. SB-01
prokMSA_id:13014 Z38023 Saccharomonospora caesia str. SB-22
prokMSA_id:13015 Z38006 Saccharomonospora glauca str. SB-37
prokMSA_id:13022 Z38003 Saccharomonospora glauca str. K169 DSM 43769
prokMSA_id:13023 Z38024 Saccharomonospora caesia str. SB-58
prokMSA_id:13024 Z38018 Saccharomonospora cyanea str. K168; NA134
prokMSA_id:13026 Z38004 Saccharomonospora glauca str. K202; J-S.Ruan 350
prokMSA_id:13029 Z38019 Saccharomonospora caesia str. K163 DSM 43068
prokMSA_id:13030 Z38017 Saccharomonospora azurea str. K161; NA128
prokMSA_id:43601 AF139879 Saccharomonospora glauca strain KCTC 9645 
prokMSA_id:63969 AF466101 Amycolatopsis sp. GY307 
prokMSA_id:81456 AY224197 Saccharomonospora sp. PAN A5 
2.30.1.13 MYCOBACTERIUM_SUBDIVISION 743 seqs
2.30.1.13.1 MYCOBACTERIA_GROUP 243 seqs
2.30.1.13.1.1 MYB.TUBERCULOSIS_SUBGROUP 224 seqs
2.30.1.13.1.1.13242 OTU 1 seq
prokMSA_id:23238 AJ416909 Mycobacterium septicum strain MB804
2.30.1.13.1.1.15485 OTU 1 seq
prokMSA_id:68741 AF479359 Glacial ice SB12K-2-16 
2.30.1.13.1.1.17817 OTU 1 seq
prokMSA_id:23960 AF480603 Mycobacterium phlei 
2.30.1.13.1.1.20661 OTU 1 seq
prokMSA_id:78549 AJ534886 Mycobacterium psychrotolerans strain WA101T
2.30.1.13.1.1.30838 OTU 2 seqs
prokMSA_id:13069 U49401 Mycobacterium hassiacum
prokMSA_id:13070 AF000225 Mycobacterium buckleii
2.30.1.13.1.1.33831 OTU 4 seqs
prokMSA_id:13067 X53999 Mycobacterium leprae
prokMSA_id:13163 X55022 Mycobacterium leprae
prokMSA_id:13246 U15186 Mycobacterium leprae str. cosmid L471
prokMSA_id:50546 U00014 Mycobacterium leprae cosmid B1549
2.30.1.13.1.1.3679 OTU 1 seq
prokMSA_id:34657 AF448435 Mycobacterium sp. MEU-1 
2.30.1.13.1.1.38682 OTU 59 seqs
prokMSA_id:13032 X79292 Mycobacterium chlorophenolicum str. PCP-I DSM 43826
prokMSA_id:13033 U90877 Mycobacterium WF2 str. WF2
prokMSA_id:13043 X88908 Mycobacterium sp. str. IWGMT 90174
prokMSA_id:13048 X55600 Mycobacterium madagascariense ATCC 49865
prokMSA_id:13056 X55597 Mycobacterium obuense ATCC 27023
prokMSA_id:13057 X84977 Mycobacterium sp. str. PYR-1
prokMSA_id:13066 X93183 Mycobacterium parafortuitum str. 311 DSM 43528
prokMSA_id:13096 AF190800 str. IFP2173
prokMSA_id:13099 AB010912 Mycobacterium sp. str. SRB1948-E04
prokMSA_id:13105 X55595 Mycobacterium aurum ATCC 23366
prokMSA_id:13108 X93995 Mycobacterium lentiflavum str. 89-446 ATCC 51988
prokMSA_id:13110 X93029 Mycobacterium sp. str. MCRO 18
prokMSA_id:13115 U65104 Mycobacterium sp
prokMSA_id:13116 AJ011771 Mycobacterium immunogen str. MN 3744
prokMSA_id:13119 AF152558 Mycobacterium n. sp. 'Fuerth 1999' str. 01.22.181
prokMSA_id:13120 X55603 Mycobacterium chitae ATCC 19627
prokMSA_id:13145 U94745 Mycobacterium duvalii str. C-63 ATCC 43910
prokMSA_id:13147 X93033 Mycobacterium sp. str. MCRO 7
prokMSA_id:13148 X93026 Mycobacterium sp. str. MCRO 10
prokMSA_id:13151 X55602 Mycobacterium thermoresistibile ATCC 19527
prokMSA_id:13160 AJ012738 Mycobacterium HE5 str. HE5
prokMSA_id:13164 X55596 Mycobacterium chubuense ATCC 27278
prokMSA_id:13179 X55601 Mycobacterium vaccae ATCC 15483
prokMSA_id:13188 X79094 Mycobacterium chlorophenolicum str. PCP-I DSM 43826
prokMSA_id:13192 AB023372 Mycobacterium IFO16251 IFO 16251
prokMSA_id:13194 AF055332 Mycobacterium M0183 str. M0183
prokMSA_id:13208 X93034 Mycobacterium sp. str. MCRO 8
prokMSA_id:13221 U30662 Mycobacterium sp. str. PYR-I Fast Growing PAH Degrader
prokMSA_id:13249 Y12872 Mycobacterium smegmatis str. M069
prokMSA_id:13250 Y08453 Mycobacterium smegmatis str. mc2 155
prokMSA_id:13251 AF058712 Mycobacterium peregrinum str. Schering 20 ATCC 14467
prokMSA_id:13252 Y12873 Mycobacterium wolinsky str. 700010
prokMSA_id:13253 Y08857 Mycobacterium sp. str. MA-112/96
prokMSA_id:13254 AJ011335 Mycobacterium mageritense str. 1336
prokMSA_id:13255 Y12871 Mycobacterium wolinsky ATCC 700009
prokMSA_id:19289 AJ271863 Mycobacterium ratisbonense strain SD4
prokMSA_id:19458 AF480592 Mycobacterium abscessus 
prokMSA_id:20364 AF480593 Mycobacterium neoaurum 
prokMSA_id:22210 AF480597 Mycobacterium chubuense 
prokMSA_id:23360 AF480591 Mycobacterium vaccae 
prokMSA_id:28966 AJ429045 Mycobacterium agri strain DSM 44515T
prokMSA_id:30438 AF268445 Mycobacterium neoaurum 
prokMSA_id:32288 AF480590 Mycobacterium tokaiense 
prokMSA_id:36821 AF480598 Mycobacterium cookii 
prokMSA_id:37469 AJ416939 Mycobacterium chelonae strain MB300
prokMSA_id:42486 AF316618 Mycobacterium fuerth 
prokMSA_id:53023 AJ276890 Mycobacterium cf. triplex 'isolate 23' and internal transcri
prokMSA_id:58279 AF544622 Mycobacterium austroafricanum isolate VM0456 complete 
prokMSA_id:58772 AJ509013 Mycobacterium sp. CF1 strain CF1
prokMSA_id:65316 AF513815 Mycobacterium goodii strain X7B 
prokMSA_id:69661 AF456239 Mycobacterium marinum strain cyprinum CC240299 
prokMSA_id:69729 AF456242 Mycobacterium sp. 'graecum DL049' 
prokMSA_id:70204 AF544623 Mycobacterium austroafricanum isolate VM0450 complete 
prokMSA_id:70548 AY162029 Mycobacterium sp. JS624 
prokMSA_id:73627 AY012577 Mycobacterium brisbanense strain ATCC 49938 
prokMSA_id:73637 AJ245702 Mycobacterium sp. strain LB501T
prokMSA_id:73821 AJ422048 Mycobacterium heidelbergense strain ITG 7971 MB43
prokMSA_id:74074 AF544624 Mycobacterium austroafricanum isolate VM0451 complete 
prokMSA_id:78097 AJ536038 Mycobacterium abscessus 
2.30.1.13.1.1.38713 OTU 20 seqs
prokMSA_id:13035 X55593 Mycobacterium diernhoferi str. SN 1418 ATCC 19340
prokMSA_id:13074 U90876 Mycobacterium RF002 str. RF002
prokMSA_id:13076 AF058299 Mycobacterium FI-25796 str. FI-25796
prokMSA_id:13141 X55599 Mycobacterium gilvum ATCC 43909
prokMSA_id:13157 X81996 Mycobacterium gilvum ATCC 43909
prokMSA_id:13158 AF165182 Mycobacterium C2-3 str. C2-3
prokMSA_id:13159 X81891 Mycobacterium sp. str. BB1
prokMSA_id:13172 X55594 Mycobacterium gadium ATCC 27726
prokMSA_id:13174 X55598 Mycobacterium aichiense ATCC 27280
prokMSA_id:13184 AF054278 Mycobacterium CH-1 str. CH-1
prokMSA_id:13185 AB010910 Mycobacterium sp. str. SRB1151-113
prokMSA_id:25000 AF480578 Mycobacterium flavescens strain ATCC 23008 
prokMSA_id:30995 AF480599 Mycobacterium diernhoferi 
prokMSA_id:32286 AJ245704 Mycobacterium sp. strain LB208
prokMSA_id:46211 AJ276274 Mycobacterium frederiksbergense strain DSM 44346
prokMSA_id:58267 AF544634 Mycobacterium gilvum isolate VM0504 complete 
prokMSA_id:58268 AF544635 Mycobacterium gilvum isolate VM0552 complete 
prokMSA_id:58269 AF544633 Mycobacterium gilvum isolate VM0505 complete 
prokMSA_id:67483 AJ457057 Mycobacterium sp. HXN1500 strain HXN1500
prokMSA_id:75651 AJ431371 Mycobacterium sp. DSM 44605 strain DSM 44605
2.30.1.13.1.1.38787 OTU 30 seqs
prokMSA_id:13039 M95488 Mycobacterium sp
prokMSA_id:13054 X82459 Mycobacterium shimoidei ATCC 27962
prokMSA_id:13055 AJ005005 Mycobacterium shimoidei ATCC 27962
prokMSA_id:13068 X80769 Mycobacterium lentiflavum str. 2186/92 ATCC 51985
prokMSA_id:13086 Z46664 Mycobacterium celatum str. 3 NCTC 12882
prokMSA_id:13091 X88906 Mycobacterium sp. str. IWGMT 90143
prokMSA_id:13104 L08170 Mycobacterium celatum ATCC 51130
prokMSA_id:13111 X88913 Mycobacterium sp. str. IWGMT 90210
prokMSA_id:13137 X93184 Mycobacterium hodleri str. EMI2 DSM 44183
prokMSA_id:13138 X80768 Mycobacterium isoniacini str. INA-I
prokMSA_id:13200 X60070 Mycobacterium genavense str. 2289 ATCC 51233
prokMSA_id:13204 X70961 Mycobacterium interjectum str. 4185/92 DSM 44064
prokMSA_id:13205 AF014935 Mycobacterium interjectum str. patient 1
prokMSA_id:13206 AF014936 Mycobacterium interjectum str. patient 2
prokMSA_id:13207 AF014937 Mycobacterium interjectum str. patient 3
prokMSA_id:13209 X88915 Mycobacterium sp. str. IWGMT 90100
prokMSA_id:13211 X88910 Mycobacterium sp. str. IWGMT 90093
prokMSA_id:13224 L08169 Mycobacterium celatum ATCC 51131
prokMSA_id:13226 AF016407 Mycobacterium IMVS B76676 IMVS B76676
prokMSA_id:13228 X82234 Mycobacterium branderi str. H 52157 ATCC 51789
prokMSA_id:13262 X67847 Mycobacterium intermedium
prokMSA_id:13264 X73630 Mycobacterium sp. str. 94-92
prokMSA_id:18950 AF406783 Mycobacterium lacus 
prokMSA_id:28341 AY065649 Mycobacterium sp. 2333 
prokMSA_id:28531 AF480583 Mycobacterium lentiflavum 
prokMSA_id:38495 AF133902 Mycobacterium kubicae 
prokMSA_id:47839 U57632 Mycobacterium triplex 
prokMSA_id:54449 AJ308603 Mycobacterium palustre and internal transcribed spacer 1 ITS
prokMSA_id:70429 AJ416914 Mycobacterium celatum strain MB72
prokMSA_id:77688 AJ536040 Mycobacterium celatum 
2.30.1.13.1.1.39009 OTU 3 seqs
prokMSA_id:13097 U62889 Mycobacterium T103 str. T103
prokMSA_id:13098 U62890 Mycobacterium T104 str. T104
prokMSA_id:70827 AF498656 Mycobacterium aichiense strain JS618 
2.30.1.13.1.1.39429 OTU 10 seqs
prokMSA_id:13047 X67096 Mycobacterium hiberniae str. Hi 11 ATCC 49874
prokMSA_id:13085 X52925 Mycobacterium terrae str. W-45 ATCC 15755
prokMSA_id:13146 AJ010747 Mycobacterium elephantis
prokMSA_id:13233 M29568 Mycobacterium terrae str. W-45 ATCC 15755
prokMSA_id:26897 X93027 Mycobacterium sp. strain MCRO 16
prokMSA_id:27078 AJ310467 Mycobacterium holsaticum strain 1406
prokMSA_id:27836 AF385898 Mycobacterium elephantis 
prokMSA_id:34222 AF480576 Mycobacterium brumae 
prokMSA_id:72357 AF480600 Mycobacterium fallax 
prokMSA_id:78035 AJ536100 Mycobacterium elephantis strain FI-13900
2.30.1.13.1.1.39659 OTU 25 seqs
prokMSA_id:13050 X52933 Mycobacterium fortuitum subsp. fortuitum ATCC 6841
prokMSA_id:13114 AF055333 Mycobacterium farcinogenes ATCC 35753
prokMSA_id:13118 AF055331 Mycobacterium ratisbonense
prokMSA_id:13183 AF023664 Mycobacterium alvei str. CR-21 CIP 103464
prokMSA_id:13190 X52921 Mycobacterium chelonae ATCC 14472
prokMSA_id:13191 Y15709 Mycobacterium anthracenicum
prokMSA_id:13193 AJ011510 Mycobacterium sp. str. DhA-55
prokMSA_id:18390 AF111809 Mycobacterium septicum 
prokMSA_id:25175 AY012575 Mycobacterium neworleansense strain ATCC 49404 
prokMSA_id:25519 AY012576 Mycobacterium concordense strain ATCC BAA-329 
prokMSA_id:28402 AF480580 Mycobacterium fortuitum strain ATCC 49403 
prokMSA_id:28701 AF480586 Mycobacterium mucogenicum strain ATCC 49650 
prokMSA_id:30001 AY012573 Mycobacterium bonickei strain ATCC 49935 
prokMSA_id:39806 AB028483 Mycobacterium sp. TA5 
prokMSA_id:41798 AF130308 Mycobacterium peregrinum 
prokMSA_id:43972 AF480596 Mycobacterium senegalense 
prokMSA_id:45568 AF480588 Mycobacterium porcinum 
prokMSA_id:47184 AF480581 Mycobacterium fortuitum strain ATCC 49404 
prokMSA_id:67346 AF494537 Mycobacterium sp. BPC5 
prokMSA_id:67481 AJ457055 Mycobacterium septicum strain HXN500
prokMSA_id:67482 AJ457056 Mycobacterium septicum strain HXN1900
prokMSA_id:71967 AY012581 Mycobacterium porcinum strain W6236 
prokMSA_id:71981 AY012580 Mycobacterium porcinum strain ATCC 49939 
prokMSA_id:78325 AJ536039 Mycobacterium fortuitum subsp. fortuitum 
prokMSA_id:79505 AY188086 Mycobacterium sp. NB01 
2.30.1.13.1.1.39763 OTU 5 seqs
prokMSA_id:13053 X84978 Mycobacterium sp. str. PAH135
prokMSA_id:13073 U30661 Mycobacterium sp. str. RJGll.135 Fast Growing Pyrene Degrade
prokMSA_id:13075 AJ012626 Mycobacterium sp. str. GP1
prokMSA_id:38064 AJ429047 Mycobacterium rhodesiae strain DSM 44223T
prokMSA_id:81725 AY211074 Mycobacterium sp. clone VC17 
2.30.1.13.1.1.40693 OTU 35 seqs
prokMSA_id:13058 X58954 Mycobacterium ulcerans
prokMSA_id:13059 X88926 Mycobacterium ulcerans str. Borstel 10564/70
prokMSA_id:13071 X52917 Mycobacterium tuberculosis str. H37/Rv
prokMSA_id:13077 X55589 Mycobacterium bovis str. vallee
prokMSA_id:13078 X52930 Mycobacterium malmoense str. Mo 816 ATCC 29571
prokMSA_id:13079 AF152560 Mycobacterium malmoense str. RV423C
prokMSA_id:13123 X88911 Mycobacterium sp. str. IWGMT 90160
prokMSA_id:13129 X55604 Mycobacterium asiaticum str. N6IH ATCC 25276
prokMSA_id:13152 X52927 Mycobacterium intracellulare str. SN 424 ATCC 15985
prokMSA_id:13165 U06638 Mycobacterium haemophilum
prokMSA_id:13167 U84502 Mycobacterium bohemicum
prokMSA_id:13168 X88923 Mycobacterium haemophilum
prokMSA_id:13173 X55588 Mycobacterium tuberculosis str. H37/Rv
prokMSA_id:13177 X58890 Mycobacterium tuberculosis
prokMSA_id:13178 AJ131120 Mycobacterium tuberculosis subsp. caprae str. gM-1
prokMSA_id:13182 M20940 Mycobacterium bovis str. BCG
prokMSA_id:13202 X52920 Mycobacterium marinum
prokMSA_id:13227 L24800 Mycobacterium haemophilum
prokMSA_id:18959 AF217192 Mycobacterium sp. 'Sydney 2453' 
prokMSA_id:23068 AY005147 Mycobacterium sp. M175 
prokMSA_id:31099 AR086358 1 from patent US 5985569
prokMSA_id:31828 AF480595 Mycobacterium asiaticum 
prokMSA_id:42375 NC_000962 Mycobacterium tuberculosis H37Rv complete genome
prokMSA_id:49893 Z83862 Mycobacterium tuberculosis H37Rv complete genome; segment 58
prokMSA_id:50858 AF251565 Mycobacterium marinum 
prokMSA_id:52725 AF480584 Mycobacterium microti 
prokMSA_id:52968 AJ277283 Mycobacterium bohemicum and internal transcribed spacer 1 IT
prokMSA_id:54160 AJ277284 Mycobacterium bohemicum and internal transcribed spacer 1 IT
prokMSA_id:54279 NC_002755 Mycobacterium tuberculosis CDC1551 complete genome
prokMSA_id:64868 AF410479 Mycobacterium avium Myc373 -23S internal transcribed spacer 
prokMSA_id:66586 AF502574 Mycobacterium pinnipedii 
prokMSA_id:66700 AF367025 Mycobacterium malmoense ; internal transcribed spacer comple
prokMSA_id:69220 AF456240 Mycobacterium marinum strain ATCC 927 
prokMSA_id:77782 AJ536032 Mycobacterium marinum 
prokMSA_id:78264 AJ536031 Mycobacterium tuberculosis 
2.30.1.13.1.1.41197 OTU 3 seqs
prokMSA_id:13122 X88925 Mycobacterium paraffinicum ATCC 12670
prokMSA_id:13124 X88912 Mycobacterium sp. str. IWGMT 90236
prokMSA_id:38629 AF480604 Mycobacterium scrofulaceum 
2.30.1.13.1.1.41824 OTU 5 seqs
prokMSA_id:13139 X15916 Mycobacterium kansasii str. SN 502 DSM 43224
prokMSA_id:13230 X52919 Mycobacterium gastri str. W-417 ATCC 15754
prokMSA_id:19621 AF480602 Mycobacterium gastri 
prokMSA_id:37486 AF480601 Mycobacterium kansasii 
prokMSA_id:77825 AJ536035 Mycobacterium kansasii 
2.30.1.13.1.1.41957 OTU 4 seqs
prokMSA_id:13162 M61664 Mycobacterium xenopi ATCC 19250
prokMSA_id:13235 X52929 Mycobacterium xenopi ATCC 19250
prokMSA_id:32230 AF174290 Mycobacterium heckeshornense 
prokMSA_id:78273 AJ536033 Mycobacterium xenopi 
2.30.1.13.1.1.42071 OTU 3 seqs
prokMSA_id:13197 X52928 Mycobacterium nonchromogenicum ATCC 19530
prokMSA_id:13198 X93032 Mycobacterium sp. str. MCRO 6
prokMSA_id:42140 AF480577 Mycobacterium engbaekii 
2.30.1.13.1.1.42277 OTU 2 seqs
prokMSA_id:13150 AF107039 Mycobacterium monacense str. B9-21-178
prokMSA_id:23135 AF387804 Mycobacterium sp. JLS 
2.30.1.13.1.1.42753 OTU 3 seqs
prokMSA_id:13142 X55591 Mycobacterium komossense str. Ko2 ATCC 33013
prokMSA_id:22237 AF247497 Mycobacterium sp. SM7.6.1 
prokMSA_id:60765 AF498650 Mycobacterium rhodesiae strain JS60 
2.30.1.13.1.1.4825 OTU 1 seq
prokMSA_id:13102 Z13990 Mycobacterium ulcerans
2.30.1.13.1.1.4958 OTU 1 seq
prokMSA_id:13140 X88924 Mycobacterium triviale ATCC 23292
2.30.1.13.1.1.5099 OTU 1 seq
prokMSA_id:13186 AJ007009 Mycobacterium sp. str. LAB2
2.30.1.13.1.1.5144 OTU 1 seq
prokMSA_id:13199 U46146 Mycobacterium sp
2.30.1.13.1.1.62 OTU 1 seq
prokMSA_id:32952 AF418956 clone HTDD3 
2.30.1.13.1.1.7851 OTU 1 seq
prokMSA_id:42979 X85244 Gordonia-like sp. strain J81
2.30.1.13.1.2 TSU.PAUROMETABOLA_SUBGROUP 19 seqs
2.30.1.13.1.2.16813 OTU 1 seq
prokMSA_id:78033 AB074644 actinobacterium clone:APe2_64
2.30.1.13.1.2.32932 OTU 18 seqs
prokMSA_id:13267 X85955 Tsukamurella inchonensis str. IMMIB D-771 DSM 44067
prokMSA_id:13269 Z37151 Tsukamurella paurometabola
prokMSA_id:13270 X80628 Tsukamurella paurometabola DSM 20162
prokMSA_id:13271 X92981 Tsukamurella pulmonis IMMIB D-1321
prokMSA_id:13272 AF001011 Tsukamurella pulmonis str. KUL50
prokMSA_id:13273 Y12247 Tsukamurella tyrosinovorans str. D-1437
prokMSA_id:13274 Y12246 Tsukamurella tyrosinovorans str. D-1397
prokMSA_id:13275 Y12248 Tsukamurella tyrosinovorans str. D-1411
prokMSA_id:13276 Y12245 Tsukamurella tyrosinovorans str. D-1498
prokMSA_id:13277 AF150494 Tsukamurella U5 str. U5
prokMSA_id:13278 Z36933 Tsukamurella paurometabola str. N663 NCTC 10741
prokMSA_id:13282 Z46751 Tsukamurella paurometabola DSM 20162
prokMSA_id:20974 AF283281 Tsukamurella inchonensis strain ATCC700082 complete 
prokMSA_id:23307 AF283282 Tsukamurella inchonensis strain ATCC25938 complete 
prokMSA_id:34660 AF093131 Tsukamurella sp. AM4.1 
prokMSA_id:42701 AF283283 Tsukamurella strandjordae strain ATCCBAA-173 complete 
prokMSA_id:45072 AF283280 Tsukamurella paurometabola complete 
prokMSA_id:69803 AF272835 Tsukamurella columbiensis complete 
2.30.1.13.2 CORYNEBACTERIUM_GROUP 252 seqs
2.30.1.13.2.1 GRD.AMARAE_SUBGROUP 9 seqs
2.30.1.13.2.1.11687 OTU 1 seq
prokMSA_id:36832 AJ251724 Gordonia spumae strain T4
2.30.1.13.2.1.16124 OTU 1 seq
prokMSA_id:32142 X85245 Gordonia sp. strain J4
2.30.1.13.2.1.16274 OTU 1 seq
prokMSA_id:16517 AF467984 Gordonia terrae strain COE-O1 
2.30.1.13.2.1.20160 OTU 1 seq
prokMSA_id:71243 AF380834 Gordonia sinesedis 
2.30.1.13.2.1.21770 OTU 1 seq
prokMSA_id:64242 AF517683 PSRB3 
2.30.1.13.2.1.41027 OTU 2 seqs
prokMSA_id:41790 AF323266 Gram positive W5P-2 
prokMSA_id:42155 AJ416151 Gordonia sihwaniensis strain DSM 44576
2.30.1.13.2.1.6552 OTU 1 seq
prokMSA_id:13302 X93485 Gordonia hirsuta str. K718a DSM 44140
2.30.1.13.2.1.9475 OTU 1 seq
prokMSA_id:35930 AF432348 Gordonia sp. HD321 
2.30.1.13.2.3 GRD.BRONCHIALIS_SUBGROUP 2 seqs
2.30.1.13.2.3.2746 OTU 1 seq
prokMSA_id:65225 AF512840 Rhodococcus rhodnii specimen-voucher CNCM 2206 
2.30.1.13.2.3.3723 OTU 1 seq
prokMSA_id:64754 AY115594 Gordonia sp. FWA92 
2.30.1.13.2.4 SK.PINIFORMIS_SUBGROUP 2 seqs
2.30.1.13.2.4.31433 OTU 2 seqs
prokMSA_id:13330 Z35435 Skermania piniformis str. UQM3063 IFO 15059
prokMSA_id:46901 AJ416152 Skermania piniformis strain DSM 43998T
2.30.1.13.2.5 WLM.MURALIS_SUBGROUP 3 seqs
2.30.1.13.2.5.20985 OTU 1 seq
prokMSA_id:41242 AB038407 Chibacore 1500 
2.30.1.13.2.5.6652 OTU 1 seq
prokMSA_id:13332 Y17384 Williamsia muralis str. MA140/96
2.30.1.13.2.5.6654 OTU 1 seq
prokMSA_id:13333 AB010909 Williamsia maris strain:SJS0289-JS1
2.30.1.13.2.6 DZ.MARIS_SUBGROUP 21 seqs
2.30.1.13.2.6.1346 OTU 1 seq
prokMSA_id:34366 AB049630 Dietzia psychroalcalophilus 
2.30.1.13.2.6.17772 OTU 1 seq
prokMSA_id:77557 AY167849 Dietzia maris strain SAFR-019 
2.30.1.13.2.6.38363 OTU 9 seqs
prokMSA_id:13345 X76704 Rhodococcus sp
prokMSA_id:19332 Y08315 Dietzia sp. strain R19
prokMSA_id:20469 X92156 sp. Little Lake Naivasha isolate 14LN1
prokMSA_id:30014 Y08316 Dietzia sp. strain R23
prokMSA_id:37758 Y08314 Dietzia sp. strain R18
prokMSA_id:38355 AY028326 Dietzia sp. ES18 
prokMSA_id:43960 X92157 Dietzia natronolimnaea strain 15LN1; CBS 107.95
prokMSA_id:44005 Y08318 Dietzia sp. strain R32
prokMSA_id:46127 Y08317 Dietzia sp. strain R30
2.30.1.13.2.6.40058 OTU 8 seqs
prokMSA_id:13335 Y17518 Dietzia 147 str. 147
prokMSA_id:13337 Y18883 unnamed organism
prokMSA_id:13339 AB010905 Dietzia JTS6455-250 str. JTS6455-250
prokMSA_id:13344 X81920 Dietzia maris str. IMV 195; AUCNM-A-593; VKM Ac-593 ATCC 350
prokMSA_id:35177 Y08311 D.maris 
prokMSA_id:77352 AY167848 Dietzia maris strain SAFR-020 
prokMSA_id:78736 AB094465 Dietzia sp. 2216.35.9 
prokMSA_id:81642 AY205297 Dietzia sp. CR1-3 
2.30.1.13.2.6.4896 OTU 1 seq
prokMSA_id:20345 Y08312 Dietzia sp. strain CIP104289
2.30.1.13.2.6.6687 OTU 1 seq
prokMSA_id:13340 AB002634 str. HTA 474
2.30.1.13.2.7 COR.XEROSIS_SUBGROUP 4 seqs
2.30.1.13.2.7.38382 OTU 4 seqs
prokMSA_id:13347 X84446 Corynebacterium xerosis DSM 20743
prokMSA_id:13348 AF145257 Corynebacterium xerosis str. 71376
prokMSA_id:13349 AF024653 Corynebacterium xerosis str. K132
prokMSA_id:13350 X81914 Corynebacterium xerosis ATCC 373
2.30.1.13.2.8 COR.GLUTAMICUM_SUBGROUP 18 seqs
2.30.1.13.2.8.24489 OTU 2 seqs
prokMSA_id:13363 X84251 Corynebacterium callunae NCIMB 10338
prokMSA_id:13365 X82053 Corynebacterium callunae CCUG 28793
2.30.1.13.2.8.31573 OTU 3 seqs
prokMSA_id:13364 X89005 Corynebacterium sp. str. EL-180
prokMSA_id:22730 AB055963 Corynebacterium efficiens strain:YS-314
prokMSA_id:71077 AB055965 Corynebacterium efficiens strain:YS-155
2.30.1.13.2.8.32379 OTU 13 seqs
prokMSA_id:13356 X80620 Rhodococcus globerulus DSM 43953
prokMSA_id:13357 X80629 Corynebacterium glutamicum DSM 20300
prokMSA_id:13358 X84257 Corynebacterium glutamicum NCIMB 10025
prokMSA_id:13359 X84240 Corynebacterium "acetoacidophilum" CIP 103776
prokMSA_id:13360 Z46753 Corynebacterium glutamicum NCIMB 10025
prokMSA_id:13362 X82061 Corynebacterium glutamicum IAM 12435
prokMSA_id:30193 AF314192 Corynebacterium glutamicum rrnE operon complete 
prokMSA_id:34960 Y11001 Corynebacterium sp. T14433 
prokMSA_id:55669 AP005274 Corynebacterium glutamicum ATCC 13032 complete genome sectio
prokMSA_id:56681 AP005282 Corynebacterium glutamicum ATCC 13032 complete genome sectio
prokMSA_id:62381 AP005283 Corynebacterium glutamicum ATCC 13032 complete genome sectio
prokMSA_id:62382 AP005278 Corynebacterium glutamicum ATCC 13032 complete genome sectio
prokMSA_id:62383 AP005276 Corynebacterium glutamicum ATCC 13032 complete genome sectio
2.30.1.13.2.9 COR.UREALYTICUM_SUBGROUP 66 seqs
2.30.1.13.2.9.20490 OTU 1 seq
prokMSA_id:25532 AJ295841 Corynebacterium testudinoris strain CCUG 41823T
2.30.1.13.2.9.21140 OTU 1 seq
prokMSA_id:64184 AF322369 Corynebacterium sp. 'Triatoma infestans' 
2.30.1.13.2.9.25555 OTU 2 seqs
prokMSA_id:13371 AJ243819 Corynebacterium auriscanis CCUG 39784
prokMSA_id:19141 AJ243820 Corynebacterium auriscarnis strain CCUG 39783
2.30.1.13.2.9.25734 OTU 4 seqs
prokMSA_id:13386 AJ222815 Corynebacterium variabilis str. AC 256 DSM 20132
prokMSA_id:13387 AJ222816 Corynebacterium variabilis str. AC 256 DSM 20536
prokMSA_id:13388 AJ222817 LMG 3820
prokMSA_id:43991 AF276640 Corynebacterium sp. IC10 
2.30.1.13.2.9.32573 OTU 2 seqs
prokMSA_id:13390 Y10077 Corynebacterium kroppenstedtii CCUG 35717
prokMSA_id:69669 AF537598 Corynebacterium kroppenstedtii isolate 00-0244 
2.30.1.13.2.9.34879 OTU 43 seqs
prokMSA_id:13381 X84444 Corynebacterium bovis NCTC 3224
prokMSA_id:13382 D38575 Corynebacterium bovis ATCC 7715
prokMSA_id:13383 X82051 Corynebacterium bovis NCTC 3224
prokMSA_id:13384 AJ222965 Corynebacterium bovis str. 5232 and 4428/4
prokMSA_id:17694 AF311436 Corynebacterium bovis strain 238 
prokMSA_id:21189 AF311425 Corynebacterium bovis strain 196 
prokMSA_id:21243 AF311414 Corynebacterium bovis strain 114 
prokMSA_id:23835 AF311434 Corynebacterium bovis strain 234 
prokMSA_id:23969 AF311403 Corynebacterium bovis strain 64 
prokMSA_id:23997 AF311389 Corynebacterium bovis strain 32 
prokMSA_id:24259 AF311402 Corynebacterium bovis strain 62 
prokMSA_id:26444 AF311421 Corynebacterium bovis strain 159 
prokMSA_id:26616 AF311395 Corynebacterium bovis strain 41 
prokMSA_id:30760 AF311404 Corynebacterium bovis strain 65 
prokMSA_id:30812 AF311393 Corynebacterium bovis strain 38 
prokMSA_id:31503 AF311419 Corynebacterium bovis strain 143 
prokMSA_id:31837 AF311429 Corynebacterium bovis strain 226 
prokMSA_id:33060 AF311415 Corynebacterium bovis strain 115 
prokMSA_id:34732 AF311400 Corynebacterium bovis strain 54 
prokMSA_id:34906 AF311407 Corynebacterium bovis strain 68 
prokMSA_id:35145 AF311405 Corynebacterium bovis strain 66 
prokMSA_id:35805 AF311410 Corynebacterium bovis strain 89 
prokMSA_id:35923 AF311411 Corynebacterium bovis strain 96 
prokMSA_id:35972 AF311412 Corynebacterium bovis strain 97 
prokMSA_id:37219 AF311420 Corynebacterium bovis strain 150 
prokMSA_id:37493 AF311390 Corynebacterium bovis strain 33 
prokMSA_id:37725 AF311418 Corynebacterium bovis strain 140 
prokMSA_id:37776 AF311417 Corynebacterium bovis strain 139 
prokMSA_id:38365 AF311406 Corynebacterium bovis strain 67 
prokMSA_id:42585 AF311399 Corynebacterium bovis strain 53 
prokMSA_id:43368 AF311396 Corynebacterium bovis strain 50 
prokMSA_id:43566 AF311394 Corynebacterium bovis strain 39 
prokMSA_id:44615 AF311430 Corynebacterium bovis strain 230 
prokMSA_id:45174 AF311392 Corynebacterium bovis strain 36 
prokMSA_id:45238 AF311426 Corynebacterium bovis strain 197 
prokMSA_id:45770 AF311431 Corynebacterium bovis strain 231 
prokMSA_id:47588 AF311401 Corynebacterium bovis strain 55 
prokMSA_id:47923 AF311432 Corynebacterium bovis strain 232 
prokMSA_id:48907 AF311424 Corynebacterium bovis strain 185 
prokMSA_id:51875 AF311435 Corynebacterium bovis strain 236 
prokMSA_id:52118 AF311433 Corynebacterium bovis strain 233 
prokMSA_id:70297 AF537590 Corynebacterium bovis isolate 99-0033 
prokMSA_id:74552 AF311391 Corynebacterium bovis strain 34 
2.30.1.13.2.9.39797 OTU 5 seqs
prokMSA_id:13369 Y13024 Corynebacterium falsenii str. CCUG 33651 DSM 44353
prokMSA_id:13377 AF115940 Corynebacterium Corynebacterium sp. MTcory14R
prokMSA_id:13379 U87815 Corynebacterium jeikeium ATCC 43217
prokMSA_id:13380 X82062 Corynebacterium jeikeium CIP 103337
prokMSA_id:71101 AF537594 Corynebacterium falsenii isolate 97-0205 
2.30.1.13.2.9.4573 OTU 1 seq
prokMSA_id:27527 AF311397 Corynebacterium bovis strain 51 
2.30.1.13.2.9.5354 OTU 1 seq
prokMSA_id:28246 AF311413 Corynebacterium bovis strain 101 
2.30.1.13.2.9.6776 OTU 1 seq
prokMSA_id:13366 X81913 Corynebacterium urealyticum ATCC 43042
2.30.1.13.2.9.6779 OTU 1 seq
prokMSA_id:13368 U87824 Corynebacterium "genitalium" ATCC 33978
2.30.1.13.2.9.6799 OTU 1 seq
prokMSA_id:13370 AB004730 Corynebacterium terpenotabidum IFO 14764
2.30.1.13.2.9.6809 OTU 1 seq
prokMSA_id:13374 U87818 Corynebacterium "genitalium" ATCC 33031
2.30.1.13.2.9.6812 OTU 1 seq
prokMSA_id:13375 U87816 Corynebacterium jeikeium ATCC 43216
2.30.1.13.2.9.6815 OTU 1 seq
prokMSA_id:13378 U87820 Corynebacterium "genitalium" ATCC 33033
2.30.1.13.2.10 COR.PSEUDOTUBERCULOSIS_SUBGROUP 34 seqs
2.30.1.13.2.10.10218 OTU 1 seq
prokMSA_id:43893 AF287755 Corynebacterium sp. oral clone AK153 
2.30.1.13.2.10.11132 OTU 1 seq
prokMSA_id:60234 AJ429234 Corynebacterium spheniscorum strain CCUG 45512T
2.30.1.13.2.10.15442 OTU 1 seq
prokMSA_id:69384 AF537589 Corynebacterium argentoratense isolate 98-0075 
2.30.1.13.2.10.23501 OTU 10 seqs
prokMSA_id:13401 D37805 Corynebacterium renale str. HR58
prokMSA_id:13404 D37806 Corynebacterium renale str. HR59
prokMSA_id:13410 X81909 Corynebacterium renale str. Charita-a CIP 103421
prokMSA_id:13413 X84249 Corynebacterium renale str. Charita-a CIP 103421
prokMSA_id:13415 D37804 Corynebacterium renale str. HR57
prokMSA_id:13416 D37803 Corynebacterium renale str. HR56
prokMSA_id:69759 D37805 Corynebacterium renale strain:HR58
prokMSA_id:70082 D37806 Corynebacterium renale strain:HR59
prokMSA_id:71449 D37803 Corynebacterium renale strain:HR56
prokMSA_id:72642 D37804 Corynebacterium renale strain:HR57
2.30.1.13.2.10.30473 OTU 2 seqs
prokMSA_id:18932 AF262996 Corynebacterium sp. ATCC43833 
prokMSA_id:33029 AF260434 Corynebacterium sp. ATCC43833 
2.30.1.13.2.10.31498 OTU 6 seqs
prokMSA_id:13392 X81907 Corynebacterium pseudotuberculosis CIP 52.97
prokMSA_id:13394 X81916 Corynebacterium pseudotuberculosis CIP 102968
prokMSA_id:13397 X81911 Corynebacterium ulcerans CCUG 2708
prokMSA_id:13400 X84256 Corynebacterium ulcerans NCTC 7910
prokMSA_id:13402 X81912 Corynebacterium ulcerans CIP 54.53
prokMSA_id:13414 X84255 Corynebacterium pseudotuberculosis NCTC 3450
2.30.1.13.2.10.31738 OTU 3 seqs
prokMSA_id:13395 X84248 Corynebacterium diphtheriae NCTC 11397
prokMSA_id:13398 X82059 Corynebacterium diphtheriae CIP 100721
prokMSA_id:26734 A58083 92 from Patent EP0745691
2.30.1.13.2.10.33351 OTU 2 seqs
prokMSA_id:58295 AF543285 Corynebacterium durum 
prokMSA_id:71635 AF537593 Corynebacterium durum isolate 99-0047 
2.30.1.13.2.10.39846 OTU 2 seqs
prokMSA_id:65331 AY101388 Boyliae praeputiale strain FD234 
prokMSA_id:65332 AY101387 Boyliae praeputiale strain FD233 
2.30.1.13.2.10.6878 OTU 1 seq
prokMSA_id:13391 X82063 Corynebacterium kutscheri CIP 103423
2.30.1.13.2.10.6886 OTU 1 seq
prokMSA_id:13393 X81871 Corynebacterium kutscheri CIP 103423
2.30.1.13.2.10.6889 OTU 1 seq
prokMSA_id:13396 Z97069 Corynebacterium durum str. IBS G15036 IBS G15036
2.30.1.13.2.10.6893 OTU 1 seq
prokMSA_id:13399 X84443 Corynebacterium matruchotii DSM 20635
2.30.1.13.2.10.7346 OTU 1 seq
prokMSA_id:13405 X84680 Corynebacterium vitarumen NCTC 20294
2.30.1.13.2.10.7402 OTU 1 seq
prokMSA_id:13418 X83955 Corynebacterium argentoratense str. IBS B10697 CIP 104296
2.30.1.13.2.11 COR.AFERMENTANS_SUBGROUP 42 seqs
2.30.1.13.2.11.17112 OTU 1 seq
prokMSA_id:69614 AF537597 Corynebacterium imitans isolate 01-0063 
2.30.1.13.2.11.25499 OTU 5 seqs
prokMSA_id:13425 X86688 Corynebacterium glucuronolyticum str. GF 838 DSM 44120
prokMSA_id:23811 AJ277970 Corynebacterium glucuronolyticum strain COR 232
prokMSA_id:38303 AJ277971 Corynebacterium glucuronolyticum strain COR 252
prokMSA_id:73162 AF537596 Corynebacterium glucuronolyticum isolate 98-0098 
prokMSA_id:74005 AF537595 Corynebacterium glucuronolyticum isolate 98-0013 
2.30.1.13.2.11.26350 OTU 2 seqs
prokMSA_id:13448 Y14651 Corynebacterium riegelii
prokMSA_id:69866 AF537602 Corynebacterium riegelii isolate 99-0185 
2.30.1.13.2.11.31976 OTU 2 seqs
prokMSA_id:13441 X84241 Corynebacterium mycetoides NCTC 9864
prokMSA_id:13444 X82066 Corynebacterium mycetoides
2.30.1.13.2.11.32010 OTU 6 seqs
prokMSA_id:13454 Y09655 Corynebacterium sundsvallense
prokMSA_id:13455 AF115942 Corynebacterium Corynebacterium sp. MTcory17R
prokMSA_id:13456 AF010474 Corynebacterium thomssenii
prokMSA_id:69927 AF537605 Corynebacterium sundsvallense isolate 93-0639 
prokMSA_id:71061 AF537606 Corynebacterium sundsvallense isolate 99-0121 
prokMSA_id:72293 AF537607 Corynebacterium thomssenii isolate 97-0130 
2.30.1.13.2.11.32237 OTU 3 seqs
prokMSA_id:13422 X82055 Corynebacterium afermentans subsp. liphophilum CIP 103500
prokMSA_id:13457 X82054 Corynebacterium afermentans subsp. afermentans CIP 103499
prokMSA_id:71216 X81874 Corynebacterium afermentans 
2.30.1.13.2.11.3226 OTU 1 seq
prokMSA_id:50265 AF227828 Corynebacterium sp. 61722 
2.30.1.13.2.11.32749 OTU 3 seqs
prokMSA_id:13432 AF115937 Corynebacterium Corynebacterium sp. MTcory5K
prokMSA_id:13434 AF115944 Corynebacterium Corynebacterium sp. MTcory21R
prokMSA_id:13435 AF115946 Corynebacterium Corynebacterium sp. MTcory24T
2.30.1.13.2.11.32820 OTU 3 seqs
prokMSA_id:13421 X82058 Corynebacterium cystitidis CIP 103424
prokMSA_id:13428 X84252 Corynebacterium cystitidis NCTC 11863
prokMSA_id:13440 D37914 Corynebacterium cystitidis ATCC 29593
2.30.1.13.2.11.40552 OTU 4 seqs
prokMSA_id:13431 AF115936 Corynebacterium Corynebacterium sp. MTcory3P
prokMSA_id:13436 AF115947 Corynebacterium Corynebacterium sp. MTcory19R
prokMSA_id:72264 AF537600 Corynebacterium mucifaciens isolate 01-0118 
prokMSA_id:74212 AF537599 Corynebacterium mucifaciens isolate 87-0436 
2.30.1.13.2.11.5018 OTU 1 seq
prokMSA_id:73330 AF537592 Corynebacterium coyleae isolate 97-0171 
2.30.1.13.2.11.7421 OTU 1 seq
prokMSA_id:13420 X73976 Turicella otitidis str. 234/92 DSM 8821
2.30.1.13.2.11.7428 OTU 1 seq
prokMSA_id:13423 Y11200 Corynebacterium mucifaciens DMMZ 2278
2.30.1.13.2.11.7430 OTU 1 seq
prokMSA_id:13424 U87819 Corynebacterium "genitalium" ATCC 33032
2.30.1.13.2.11.7442 OTU 1 seq
prokMSA_id:13427 AF115945 Corynebacterium Corynebacterium sp. MTcory11W
2.30.1.13.2.11.7484 OTU 1 seq
prokMSA_id:13437 Y09569 Corynebacterium camporealensis str. CRS-51 CECT 4897
2.30.1.13.2.11.7489 OTU 1 seq
prokMSA_id:13439 X81904 Corynebacterium sp. str. taxon 2 CDC G5911
2.30.1.13.2.11.7516 OTU 1 seq
prokMSA_id:13442 Y09045 Corynebacterium sp. str. 1944
2.30.1.13.2.11.7520 OTU 1 seq
prokMSA_id:13445 Y09044 Corynebacterium sp. str. 2023
2.30.1.13.2.11.7526 OTU 1 seq
prokMSA_id:13449 U87821 Corynebacterium "genitalium" ATCC 33034
2.30.1.13.2.11.7543 OTU 1 seq
prokMSA_id:13451 U87817 Corynebacterium "genitalium" ATCC 33030
2.30.1.13.2.11.812 OTU 1 seq
prokMSA_id:25821 AJ297402 Corynebacterium capitovis strain CCUG 39779 strain
2.30.1.13.2.12 COR.FLAVESCENS_SUBGROUP 11 seqs
2.30.1.13.2.12.26673 OTU 2 seqs
prokMSA_id:13463 X84441 Corynebacterium flavescens NCDO 1320
prokMSA_id:13466 X82060 Corynebacterium flavescens CIP 69.5
2.30.1.13.2.12.7170 OTU 1 seq
prokMSA_id:27896 Y11000 Corynebacterium sp. B55443 
2.30.1.13.2.12.7563 OTU 1 seq
prokMSA_id:13458 X82056 Corynebacterium ammoniagenes CIP 101283
2.30.1.13.2.12.7565 OTU 1 seq
prokMSA_id:13459 X84440 Corynebacterium ammoniagenes CIP 101283
2.30.1.13.2.12.7585 OTU 1 seq
prokMSA_id:13460 X89778 Corynebacterium sp. str. EL-68
2.30.1.13.2.12.7598 OTU 1 seq
prokMSA_id:13465 AB010906 Corynebacterium sp. str. QKT1393-078
2.30.1.13.2.12.7602 OTU 1 seq
prokMSA_id:13467 X84246 Corynebacterium pilosum str. 46 Hara NCTC 11862
2.30.1.13.2.12.7605 OTU 1 seq
prokMSA_id:13468 D37915 Corynebacterium pilosum str. 46 Hara ATCC 29592
2.30.1.13.2.12.7607 OTU 1 seq
prokMSA_id:13469 X81908 Corynebacterium pilosum str. 46 Hara ATCC 29592
2.30.1.13.2.12.8546 OTU 1 seq
prokMSA_id:50892 AF267152 Corynebacterium casei LMG S-19264 
2.30.1.13.2.13 COR.MINUTISSIMUM_SUBGROUP 18 seqs
2.30.1.13.2.13.12323 OTU 1 seq
prokMSA_id:74894 AY150562 Rhodococcus sp
2.30.1.13.2.13.15000 OTU 1 seq
prokMSA_id:37997 AJ401282 Corynebacterium felinum strain CCUG 39943
2.30.1.13.2.13.27369 OTU 2 seqs
prokMSA_id:13477 X84678 Corynebacterium minutissimum str. clone 1 NCTC 10288
prokMSA_id:13479 X84679 Corynebacterium minutissimum str. clone 1 NCTC 10288
2.30.1.13.2.13.40441 OTU 12 seqs
prokMSA_id:13471 X84442 Corynebacterium striatum NCTC 764
prokMSA_id:13472 AJ012836 Corynebacterium sp. str. UCL301
prokMSA_id:13473 AJ012837 Corynebacterium sp. str. UCL553
prokMSA_id:13474 AJ012838 Corynebacterium sp. str. UCL557
prokMSA_id:13481 AF115934 Corynebacterium Corynebacterium sp. MTcory1P
prokMSA_id:30005 AF220220 Corynebacterium nigricans sp. nov
prokMSA_id:45813 AY008302 Corynebacterium striatum 
prokMSA_id:57711 AJ315961 Corynebacterium aurimucosum strain IMMIB R-222
prokMSA_id:57712 AJ309207 Corynebacterium aurimucosum strain IMMIB D-1488
prokMSA_id:69059 AF537608 Corynebacterium nigricans isolate 92-0360 
prokMSA_id:70353 AF537603 Corynebacterium simulans isolate 81-0613 
prokMSA_id:73498 AF537604 Corynebacterium simulans isolate 00-0186 
2.30.1.13.2.13.7644 OTU 1 seq
prokMSA_id:13478 AF033314 Corynebacterium 'CDC B8037' CDC B8037
2.30.1.13.2.13.7664 OTU 1 seq
prokMSA_id:13482 AF115941 Corynebacterium Corynebacterium sp. MTcory16R
2.30.1.13.2.14 COR.MACGINLEYI_SUBGROUP 6 seqs
2.30.1.13.2.14.27453 OTU 2 seqs
prokMSA_id:13486 X84245 Corynebacterium "fastidiosum" CIP 103808
prokMSA_id:13487 X84437 Corynebacterium "segmentosum" NCTC 934
2.30.1.13.2.14.41655 OTU 2 seqs
prokMSA_id:13483 X80499 Corynebacterium macginleyi str. JCL-2 CIP 104099
prokMSA_id:67684 AF490772 Corynebacterium macginleyi 
2.30.1.13.2.14.7668 OTU 1 seq
prokMSA_id:13484 X80500 Corynebacterium accolens CCUG 28779
2.30.1.13.2.14.7671 OTU 1 seq
prokMSA_id:13485 Y09806 Corynebacterium sp. str. MC8
2.30.1.13.2.15 COR.TUBERCULOSTEARICUM_SUBGROUP 8 seqs
2.30.1.13.2.15.32164 OTU 7 seqs
prokMSA_id:13488 X84247 Corynebacterium "tuberculostearicum" ATCC 35692
prokMSA_id:13490 AF115935 Corynebacterium Corynebacterium sp. MTcory2P
prokMSA_id:13491 AF115943 Corynebacterium Corynebacterium sp. MTcory20R
prokMSA_id:13492 X80498 Corynebacterium sp. CDC G5840
prokMSA_id:13494 AF018035 clone I-109
prokMSA_id:19533 AJ291838 Corynebacterium sp. IrT-R5M2-141 
prokMSA_id:22102 AF234634 Corynebacterium sp. 61720 
2.30.1.13.2.15.7693 OTU 1 seq
prokMSA_id:13493 U87822 Corynebacterium pseudogenitalium ATCC 33035
2.30.1.13.2.16 COR.PSEUDODIPHTHERITICUM_SUBGROUP 6 seqs
2.30.1.13.2.16.32165 OTU 4 seqs
prokMSA_id:13495 X84438 Corynebacterium propinquum CIP 103792
prokMSA_id:13496 X81917 Corynebacterium propinquum CIP 103792
prokMSA_id:13497 X84258 Corynebacterium pseudodiphtheriticum NCTC 11136
prokMSA_id:13498 X81918 Corynebacterium pseudodiphtheriticum CIP 103420
2.30.1.13.2.16.3385 OTU 1 seq
prokMSA_id:73184 AF537591 Corynebacterium confusum isolate 99-0145 
2.30.1.13.2.16.8216 OTU 1 seq
prokMSA_id:13500 Y15887 Corynebacterium confusum DMMZ 3259
2.30.1.13.2.99 VARIOUS 2 seqs
2.30.1.13.2.99.40547 OTU 2 seqs
prokMSA_id:13373 U87823 Corynebacterium jeikeium ATCC 43734
prokMSA_id:13476 Y10999 Corynebacterium singulare str. B52218 IBS B52218
2.30.1.13.3 RCO.RHODOCHROUS_GROUP 37 seqs
2.30.1.13.3.10024 OTU 1 seq
prokMSA_id:20961 AF439261 Rhodococcus rhodochrous 
2.30.1.13.3.14609 OTU 1 seq
prokMSA_id:39131 AJ290022 FukuS5 
2.30.1.13.3.15824 OTU 1 seq
prokMSA_id:69420 AJ511294 Nocardioides sp. ND6 
2.30.1.13.3.19459 OTU 1 seq
prokMSA_id:63301 AF523917 clone RCP2-103 
2.30.1.13.3.41080 OTU 8 seqs
prokMSA_id:13513 X80624 Rhodococcus rhodochrous DSM 43274
prokMSA_id:13514 AJ007002 Rhodococcus sp. str. LC1
prokMSA_id:13516 X81936 Rhodococcus rhodochrous str. 372 CIP 1759.88
prokMSA_id:13517 X79288 Rhodococcus rhodochrous str. 372 DSM 43241
prokMSA_id:23734 AF173005 Rhodococcus pyridinovorans 
prokMSA_id:54731 AF459741 Rhodococcus pyridinivorans strain R04 
prokMSA_id:55435 AY090021 Rhodococcus sp. PNAN 5 
prokMSA_id:64670 AF420423 Rhodococcus sp. ARG-BN062 
2.30.1.13.3.41493 OTU 3 seqs
prokMSA_id:13506 X81928 Rhodococcus coprophilus ATCC 29080
prokMSA_id:13507 X80626 Rhodococcus coprophilus DSM 43347
prokMSA_id:43835 AJ306402 Rhodococcus coprophilus isolate orange NZRM 4028
2.30.1.13.3.41498 OTU 4 seqs
prokMSA_id:13508 AB010902 Rhodococcus sp. str. IBT2679-024
prokMSA_id:13509 AJ007001 Rhodococcus sp. str. LB1
prokMSA_id:13510 AF191343 Rhodococcus zopfii DSM 44108
prokMSA_id:19630 AB066343 Rhodococcus sp. B184 
2.30.1.13.3.41901 OTU 2 seqs
prokMSA_id:77309 AY167844 Nocardioides fulvus strain SAFR-045 
prokMSA_id:77501 AY167855 Nocardioides fulvus strain SAFR-005 
2.30.1.13.3.42282 OTU 8 seqs
prokMSA_id:13503 X80625 Rhodococcus ruber DSM 43338
prokMSA_id:13504 AF103733 Rhodococcus YH1 str. YH1
prokMSA_id:32848 AF350248 Rhodococcus ruber strain AS4.1187 
prokMSA_id:51915 AF323255 Gram positive B1G-1B 
prokMSA_id:60987 AF529079 Rhodococcus sp. An 
prokMSA_id:63346 AY114177 Rhodococcus ruber strain AS 4.1038 
prokMSA_id:64675 AF420413 Rhodococcus sp. USA-AN012 
prokMSA_id:64753 AY114109 Rhodococcus sp. E33 
2.30.1.13.3.42385 OTU 2 seqs
prokMSA_id:67231 AF447392 Rhodococcus aetherovorans strain Bc663 
prokMSA_id:67233 AF447391 Rhodococcus aetherovorans strain 10bc312 
2.30.1.13.3.42869 OTU 2 seqs
prokMSA_id:77648 AB098592 Rhodococcus sp. TUT1024 
prokMSA_id:77968 AB098593 Rhodococcus sp. TUT1025 
2.30.1.13.3.540 OTU 1 seq
prokMSA_id:34259 AY013691 Banisveld landfill BVC83 
2.30.1.13.3.8010 OTU 1 seq
prokMSA_id:82135 AJ549287 Nocardioides sp. NS/33 strain NS/33
2.30.1.13.3.8217 OTU 1 seq
prokMSA_id:13501 X81934 Rhodococcus zopfii ATCC 51349
2.30.1.13.3.8224 OTU 1 seq
prokMSA_id:13505 X92701 clone TM177
2.30.1.13.4 RCO.RHODNII_GROUP 4 seqs
2.30.1.13.4.27243 OTU 4 seqs
prokMSA_id:13519 X81935 Rhodococcus rhodnii ATCC 35071
prokMSA_id:13520 X80622 Rhodococcus rhodnii str. N 443 DSM 43337
prokMSA_id:13521 X80621 Rhodococcus rhodnii str. N 445 DSM 43336
prokMSA_id:13522 X80623 Rhodococcus rhodnii str. N 444 DSM 43959
2.30.1.13.5 NOC.CORYNEBACTEROIDES_GROUP 7 seqs
2.30.1.13.5.32568 OTU 5 seqs
prokMSA_id:13523 X80615 Nocardia corynebacteroides DSM 20151
prokMSA_id:13524 Y07813 Rhodococcus corynebacteroides CIP 104291
prokMSA_id:13525 Y07849 Rhodococcus corynebacteroides CIP 104294
prokMSA_id:32826 AF356016 Actinobacterium NZ2 
prokMSA_id:81710 AF430066 Nocardia corynebacterioides strain DSM 20151 complete 
2.30.1.13.5.41286 OTU 2 seqs
prokMSA_id:68738 AF479363 Glacial ice SB12K-2-5 
prokMSA_id:77378 AY167850 Nocardia corynebacterioides strain SAFR-015 
2.30.1.13.6 RHODOCOCCUS_GROUP 196 seqs
2.30.1.13.6.1 RCO.OPACUS_SUBGROUP 7 seqs
2.30.1.13.6.1.10100 OTU 1 seq
prokMSA_id:59505 AJ490526 Rhodococcus erythropolis strain AJ270
2.30.1.13.6.1.12819 OTU 1 seq
prokMSA_id:44836 Y08313 Dietzia sp. strain CIP104293
2.30.1.13.6.1.42208 OTU 2 seqs
prokMSA_id:13571 X81933 Rhodococcus marinonascens ATCC 35653
prokMSA_id:13574 X80617 Rhodococcus marinonascens
2.30.1.13.6.1.8390 OTU 1 seq
prokMSA_id:13541 U20791 Rhodococcus sp
2.30.1.13.6.1.8492 OTU 1 seq
prokMSA_id:13576 U89713 Rhodococcus globerulus str. PWD1 NCIMB 12315
2.30.1.13.6.1.9044 OTU 1 seq
prokMSA_id:37109 AF468521 Rhodococcus sp. DK17 
2.30.1.13.6.2 RCO.FASCIANS_SUBGROUP 21 seqs
2.30.1.13.6.2.32141 OTU 21 seqs
prokMSA_id:13577 X79187 Rhodococcus fascians
prokMSA_id:13580 X79186 Rhodococcus fascians
prokMSA_id:13581 Y11196 Rhodococcus fascians str. D188
prokMSA_id:13582 AF181689 Rhodococcus 5/1 str. 5/1
prokMSA_id:13583 AF181690 Rhodococcus 5/14 str. 5/14
prokMSA_id:13584 AB010907 Rhodococcus sp. str. SGB1168-116
prokMSA_id:13585 AB010908 Rhodococcus sp. str. SGB1168-118
prokMSA_id:13586 AB010913 Rhodococcus sp. str. SRB1948-Z40
prokMSA_id:13587 X81930 Rhodococcus fascians ATCC 12974
prokMSA_id:18740 AF260713 Rhodococcus sp. S9 
prokMSA_id:35057 AF205371 Rhodococcus fascians 
prokMSA_id:42627 AF235011 Rhodococcus sp. UFZ-B520 
prokMSA_id:59542 AF538745 CAGY6 strain CAGY6 
prokMSA_id:61955 AJ244659 Rhodococcus sp. V4.ME.27 
prokMSA_id:65243 AB070458 Rhodococcus sp. YK2 
prokMSA_id:70020 AJ293818 Antarctic seawater R7241 
prokMSA_id:70233 AJ278779 strain R7212
prokMSA_id:70795 AJ295711 Polar sea R7704 
prokMSA_id:73382 AJ293819 Arctic seawater R7851 
prokMSA_id:80384 AY189683 Rhodococcus sp. P_wp0223 
prokMSA_id:80394 AY188941 Rhodococcus sp. P_wp0233 
2.30.1.13.6.3 RCO.EQUI_SUBGROUP 12 seqs
2.30.1.13.6.3.34687 OTU 12 seqs
prokMSA_id:13588 X82052 Corynebacterium hoagii ATCC 7005
prokMSA_id:13591 X80594 Rhodococcus equi ATCC 33707
prokMSA_id:13592 X80603 Rhodococcus equi ATCC 6939
prokMSA_id:13593 X80614 Rhodococcus equi DSM 20307
prokMSA_id:13594 X80613 Rhodococcus equi str. 545 DSM 43199
prokMSA_id:25876 AJ272473 Rhodococcus equi strain CUB 1242
prokMSA_id:46329 AJ272468 Rhodococcus equi strain CUB 1116
prokMSA_id:49374 AJ272469 Rhodococcus equi strain CUB1156
prokMSA_id:54298 AJ272470 Rhodococcus equi strain CUB1152
prokMSA_id:55331 AF420420 Rhodococcus sp. 871-AN030 
prokMSA_id:64672 AF420418 Rhodococcus sp. 871-AN029 
prokMSA_id:74538 AJ272467 Rhodococcus equi strain CUB 1063 NCTC 4219
2.30.1.13.6.4 NOC.ASTEROIDES_SUBGROUP 156 seqs
2.30.1.13.6.4.17053 OTU 1 seq
prokMSA_id:39505 AF314425 PHOS-HE93 
2.30.1.13.6.4.18381 OTU 1 seq
prokMSA_id:54743 AJ303008 Nocardia ignorata strain DSM 44496
2.30.1.13.6.4.19456 OTU 1 seq
prokMSA_id:40439 AF277223 Nocardia soli 
2.30.1.13.6.4.21023 OTU 1 seq
prokMSA_id:71341 AY036054 Nocardia devorans strain N1086 
2.30.1.13.6.4.28928 OTU 4 seqs
prokMSA_id:13614 Z37989 Nocardia crassostreae str. NB4H C.S. Friedman ATCC 700418
prokMSA_id:13615 U92799 Nocardia crassostrae str. RB1
prokMSA_id:13616 U92800 Nocardia crassostrae str. OB3
prokMSA_id:81719 AF430049 Nocardia crassostreae strain JCM 10500 complete 
2.30.1.13.6.4.2890 OTU 1 seq
prokMSA_id:35195 AF282889 Nocardia cyriacigeorgici complete 
2.30.1.13.6.4.32951 OTU 14 seqs
prokMSA_id:13612 X80592 Nocardia seriolae ATCC 43993
prokMSA_id:13643 Z36925 Nocardia seriolae str. N1116 JCM 3360
prokMSA_id:17289 AF254421 Nocardia seriolae strain NA117 complete 
prokMSA_id:19134 AY017474 Nocardia seriolae 
prokMSA_id:19445 AF254420 Nocardia seriolae strain NA118 complete 
prokMSA_id:20876 AB035565 Nocardia sp. MU99401 
prokMSA_id:39702 AF254419 Nocardia seriolae strain NA115 complete 
prokMSA_id:40613 AF251566 Nocardia seriolae 
prokMSA_id:43711 AF254417 Nocardia seriolae strain NA109 complete 
prokMSA_id:47578 AF254418 Nocardia seriolae strain NA111 complete 
prokMSA_id:56684 AF380937 Nocardia seriolae complete 
prokMSA_id:63689 AF421563 Nocardia sp. 98-37-068A 
prokMSA_id:66021 AF380938 Nocardia seriolae strain NA114K 
prokMSA_id:82195 AF430039 Nocardia seriolae strain DSM 44129 complete 
2.30.1.13.6.4.35491 OTU 2 seqs
prokMSA_id:47640 AF459443 Nocardia caishijiensis 
prokMSA_id:82429 AF430046 Nocardia pseudovaccinii strain DSM 43406 complete 
2.30.1.13.6.4.38355 OTU 43 seqs
prokMSA_id:13621 Z36930 Nocardia nova str. N1112 JCM 6044
prokMSA_id:13622 AB024312 Nocardia MK703-102F1 str. MK703-102F1
prokMSA_id:13623 Z37136 Nocardia pseudosporangifera JCM 3288
prokMSA_id:13632 Z36927 Nocardia vaccinii str. N1199 DSM 43285
prokMSA_id:13633 AF060790 Nocardia Y9 str. Y9
prokMSA_id:13637 Z46752 Nocardia uniformis JCM 3224
prokMSA_id:13638 Z36926 Nocardia transvalensis str. N1202 DSM 43405
prokMSA_id:13639 X80609 Nocardia transvalensis str. N1202 DSM 43405
prokMSA_id:20332 AF277198 Nocardia africana 
prokMSA_id:22413 Z82232 N.transvalensis N1045 
prokMSA_id:24358 AF278572 Nocardia veterana 
prokMSA_id:25221 Z82238 N.otitidis-caviarum N230 
prokMSA_id:28472 Z82226 N.asteroides ATCC 49873 
prokMSA_id:29166 Z82239 N.otitidis-caviarum N299 
prokMSA_id:34077 Z82240 N.transvalensis N630 
prokMSA_id:35040 Z82220 N.asteroides N168 
prokMSA_id:38252 Z82237 N.otitidis-caviarum N133 
prokMSA_id:38297 AF302230 Nocardia africana SD925 
prokMSA_id:43187 Z82234 N.otitidis-caviarum N1053 
prokMSA_id:43592 Z82235 N.transvalensis N1080 
prokMSA_id:43786 AF302231 Nocardia africana SD910 
prokMSA_id:48062 Z82236 N.transvalensis N1082 
prokMSA_id:48486 Z82221 N.asteroides N206 
prokMSA_id:50336 Z82233 N.transvalensis N1408 
prokMSA_id:55920 AY149599 Nocardia veterana isolate B430 
prokMSA_id:58653 AB092437 Nocardia sp. YU011-1 
prokMSA_id:62867 AF397063 Nocardia sp. AB111111 
prokMSA_id:79112 AY155203 Nocardia sp. ATCC 49872 complete 
prokMSA_id:81101 AF430028 Nocardia nova strain JCM 6044 complete 
prokMSA_id:81184 AF430044 Nocardia uniformis strain DSM 43136 complete 
prokMSA_id:81390 AF430030 Nocardia nova strain S559 complete 
prokMSA_id:81458 AF430045 Nocardia vaccinii strain DSM 43285 complete 
prokMSA_id:81459 AF430059 Nocardia veterana strain DSM 40777 complete 
prokMSA_id:81683 AF430068 Nocardia otitidiscaviarum strain S639 complete 
prokMSA_id:82005 AF430029 Nocardia nova strain S556 complete 
prokMSA_id:82030 AF430031 Nocardia nova strain DSM 43256 complete 
prokMSA_id:82063 AF430047 Nocardia transvalensis strain DSM 43405 complete 
prokMSA_id:82068 AF430060 Nocardia sp. DSM 40872 complete 
prokMSA_id:82175 AF430058 Nocardia sp. DSM 43399 complete 
prokMSA_id:82272 AF430054 Nocardia africana strain DSM 44491 complete 
prokMSA_id:82279 AF430061 Nocardia sp. DSM 46070 complete 
prokMSA_id:82356 AF430055 Nocardia veterana strain DSM 44445 complete 
prokMSA_id:82443 AF430067 Nocardia otitidiscaviarum strain DSM 43242 complete 
2.30.1.13.6.4.39512 OTU 18 seqs
prokMSA_id:13630 Z46750 Nocardia salmonicida JCM 4826
prokMSA_id:22063 AF277203 Nocardia sp. S24 
prokMSA_id:25032 AF277210 Nocardia sp. R7 
prokMSA_id:26611 AF277202 Nocardia cummidelens strain R89 
prokMSA_id:29293 AF277216 Nocardia sp. R26 
prokMSA_id:31681 AF277214 Nocardia sp. R32 
prokMSA_id:31723 AF277199 Nocardia soli 
prokMSA_id:33953 AF277227 Nocardia sp. R441 
prokMSA_id:35733 AF277211 Nocardia sp. R25 
prokMSA_id:36433 AF277204 Nocardia fluminea 
prokMSA_id:39158 AF277221 Nocardia sp. R66 
prokMSA_id:45886 AF277206 Nocardia sp. W138 
prokMSA_id:49884 AF277208 Nocardia sp. R112 
prokMSA_id:81098 AF430063 Nocardia sp. DSM 6249 complete 
prokMSA_id:81721 AF430052 Nocardia cummidelens strain DSM 44490 complete 
prokMSA_id:81778 AF430053 Nocardia fluminea strain DSM 44489 complete 
prokMSA_id:82203 AF430050 Nocardia salmonicida strain DSM 40472 complete 
prokMSA_id:82373 AF430051 Nocardia soli strain DSM 44488 complete 
2.30.1.13.6.4.4146 OTU 1 seq
prokMSA_id:66022 AF380936 Nocardia seriolae strain NA2 
2.30.1.13.6.4.42018 OTU 46 seqs
prokMSA_id:13600 Z36929 Nocardia carnea str. N1200 DSM 43397
prokMSA_id:13603 Z36928 Nocardia brevicatena str. N1201 DSM 43024
prokMSA_id:13606 X80602 Nocardia carnea ATCC 6847
prokMSA_id:13609 AF154129 Nocardia amycolata str. AS4.1521T
prokMSA_id:13617 X84850 Nocardia asteroides str. M. Goodfellow N317 ATCC 19247
prokMSA_id:13624 X80606 Nocardia asteroides DSM 43757
prokMSA_id:13627 X84851 Nocardia asteroides ATCC 23824
prokMSA_id:13629 X57949 Nocardia asteroides
prokMSA_id:13631 X80608 Nocardia brasiliensis
prokMSA_id:13635 Z36934 Nocardia asteroides str. M. Goodfellow N317 ATCC 19247
prokMSA_id:13640 Z36935 Nocardia brasiliensis str. M. Goodfellow N318 ATCC 19296
prokMSA_id:13641 X80600 Nocardia brevicatena ATCC 15333
prokMSA_id:13644 X80607 Nocardia carnea
prokMSA_id:13645 X84857 Nocardia pseudobrasiliensis ATCC 51512
prokMSA_id:13646 X84856 Nocardia pseudobrasiliensis ATCC 51511
prokMSA_id:13647 X84852 Nocardia pseudobrasiliensis CIP 92604
prokMSA_id:13648 X84853 Nocardia pseudobrasiliensis CDC N1049
prokMSA_id:13649 X84854 Nocardia pseudobrasiliensis CDC N249
prokMSA_id:13650 X84855 Nocardia pseudobrasiliensis CDC N649
prokMSA_id:18053 Z82230 N.asteroides N565 
prokMSA_id:21724 Z82231 N.asteroides N569 
prokMSA_id:25440 AF179865 Nocardia paucivorans complete 
prokMSA_id:26947 Z82218 N.asteroides ATCC 14759 
prokMSA_id:29160 Z82228 N.asteroides N488 
prokMSA_id:36370 Z82224 N.asteroides N411 
prokMSA_id:40151 Z82227 N.asteroides N450 
prokMSA_id:49182 Z82225 N.asteroides N419 
prokMSA_id:52328 Z82223 N.asteroides N394 
prokMSA_id:63688 AF421565 Nocardia sp. 97-21-103A 
prokMSA_id:75323 AB092570 Nocardia sp. IFM 0860 
prokMSA_id:81064 AF430023 Nocardia sp. DSM 43254 complete 
prokMSA_id:81150 AF430027 Nocardia cyriacigeorgica strain DSM 44484 complete 
prokMSA_id:81200 AF430042 Nocardia pseudobrasiliensis strain DSM 44290 complete 
prokMSA_id:81432 AF430040 Nocardia brevicatena strain DSM 43024 complete 
prokMSA_id:81484 AF430035 Nocardia carnea strain DSM 43397 complete 
prokMSA_id:81540 AF430021 Nocardia sp. DSM 43253 complete 
prokMSA_id:81612 AF430038 Nocardia brasiliensis strain DSM 43758 complete 
prokMSA_id:81647 AF430020 Nocardia cyriacigeorgica strain DSM 43005 complete 
prokMSA_id:81651 AF430036 Nocardia carnea strain S547 complete 
prokMSA_id:81678 AF430022 Nocardia sp. DSM 43576 complete 
prokMSA_id:81737 AF430062 Nocardia sp. DSM 43396 complete 
prokMSA_id:81766 AF430037 Nocardia carnea strain DSM 46071 complete 
prokMSA_id:81999 AF430024 Nocardia sp. DSM 43260 complete 
prokMSA_id:82196 AF430019 Nocardia asteroides strain DSM 43757 complete 
prokMSA_id:82307 AF430043 Nocardia pseudobrasiliensis strain JCM 9883 complete 
prokMSA_id:82341 AF430041 Nocardia paucivorans strain DSM 44386 complete 
2.30.1.13.6.4.42352 OTU 4 seqs
prokMSA_id:13601 Z46754 Nocardia flavorozea JCM 3332
prokMSA_id:13605 X80593 Nocardia nova ATCC 33726
prokMSA_id:13628 X80597 Nocardia vaccinii ATCC 11092
prokMSA_id:13636 X80599 Nocardia otitidiscaviarum ATCC 14629
2.30.1.13.6.4.42364 OTU 13 seqs
prokMSA_id:13604 X80610 Nocardia farcinica
prokMSA_id:13608 X80611 Nocardia otitidiscaviarum
prokMSA_id:13610 X91041 Nocardia farcinica str. GD1
prokMSA_id:13611 AJ131211 Nocardia farcinica
prokMSA_id:13613 X80604 Nocardia farcinica CIP 3029.92
prokMSA_id:13619 Z36936 Nocardia farcinica str. M. Goodfellow N898 ATCC 3318
prokMSA_id:13620 X80595 Nocardia farcinica str. M. Goodfellow N898 ATCC 3318
prokMSA_id:13626 X80605 Nocardia farcinica CIP 3030.92
prokMSA_id:19866 AF331799 Nocardia sp. 4.1177 
prokMSA_id:81174 AF430025 Nocardia asteroides strain DSM 43258 complete 
prokMSA_id:81217 AF430033 Nocardia farcinica strain DSM 43665 complete 
prokMSA_id:82387 AF430034 Nocardia farcinica strain S560 complete 
prokMSA_id:82420 AF430026 Nocardia asteroides strain DSM 43255 complete 
2.30.1.13.6.4.46 OTU 1 seq
prokMSA_id:63690 AF421564 Nocardia sp. 99-08-244A 
2.30.1.13.6.4.5636 OTU 1 seq
prokMSA_id:81205 AF430048 Nocardia flavorosea strain JCM 3342 complete 
2.30.1.13.6.4.579 OTU 1 seq
prokMSA_id:64359 AB086861 Nocardia pseudobrasiliensis strain:IFM 10098
2.30.1.13.6.4.7191 OTU 1 seq
prokMSA_id:82059 AF430064 Nocardia sp. DSM 46067 complete 
2.30.1.13.6.4.9123 OTU 1 seq
prokMSA_id:13602 X80598 Nocardia transvalensis ATCC 6865
2.30.1.13.6.4.9725 OTU 1 seq
prokMSA_id:81707 AF430057 Nocardia sp. DSM 43395 complete 
2.30.1.13.99 VARIOUS 4 seqs
2.30.1.13.99.41660 OTU 4 seqs
prokMSA_id:65416 AF513105 clone 799 
prokMSA_id:65421 AF513099 clone 61 
prokMSA_id:65423 AF513097 clone 53 
prokMSA_id:65438 AF513084 clone 10 
2.30.1.99 VARIOUS 4 seqs
2.30.1.99.41294 OTU 2 seqs
prokMSA_id:61957 AJ244657 Nocardioides sp. V4.BE.17 
prokMSA_id:68739 AF479362 Glacial ice SB12K-2-4 
2.30.1.99.42698 OTU 2 seqs
prokMSA_id:80505 AF468240 clone ARKCH2Br2-66 
prokMSA_id:80675 AF468297 clone ARKIA-43 
2.30.2 THERMOANAEROBACTER_AND_RELATIVES 221 seqs
2.30.2.1 DFM.GEOTHERMICUM_GROUP 32 seqs
2.30.2.1.10660 OTU 1 seq
prokMSA_id:51740 AJ294433 Desulfotomaculum sp. DSM 7213 strain DSM 7213 clone 14
2.30.2.1.12421 OTU 1 seq
prokMSA_id:30331 AB035723 Thermophilic propionate-oxidizing SI 
2.30.2.1.1252 OTU 1 seq
prokMSA_id:71619 AF295656 Desulfotomaculum sp. 175 
2.30.2.1.12757 OTU 1 seq
prokMSA_id:68349 AF481213 Firmicutes oral clone MCE7_107 E1 
2.30.2.1.15091 OTU 1 seq
prokMSA_id:23525 AY069974 Desulfotomaculum sp. Mechichi-2001 
2.30.2.1.15086 OTU 1 seq
prokMSA_id:23520 AJ271450 Natronoanaerobium salstagnum isolate O-M12SP-2
2.30.2.1.15650 OTU 1 seq
prokMSA_id:47128 AJ294428 Desulfotomaculum geothermicum strain DSM 3669
2.30.2.1.18364 OTU 1 seq
prokMSA_id:17431 AB076610 Sporotomaculum syntrophicum 
2.30.2.1.29673 OTU 2 seqs
prokMSA_id:13664 Y11575 Desulfotomaculum thermosapovorans str. MLF DSM 6562
prokMSA_id:13681 Z26315 Desulfotomaculum thermosapovorans str. MLF DSM 6562
2.30.2.1.29697 OTU 2 seqs
prokMSA_id:13671 Y11574 Desulfotomaculum thermobenzoicum str. TSB DSM 6193
prokMSA_id:51349 AJ294430 Desulfotomaculum thermobenzoicum strain DSM 6193 clone 11
2.30.2.1.42608 OTU 2 seqs
prokMSA_id:34816 AJ294432 Desulfotomaculum sp. DSM 7213 strain DSM 7213 clone 10
prokMSA_id:38022 AJ294431 Desulfotomaculum sp. DSM 7213 strain DSM 7213 clone 19A
2.30.2.1.5219 OTU 1 seq
prokMSA_id:73391 AF295657 Desulfotomaculum sp. 176 
2.30.2.1.6002 OTU 1 seq
prokMSA_id:42719 AF423181 Toluene-degrading methanogenic consortium Eub 1 
2.30.2.1.8292 OTU 1 seq
prokMSA_id:50826 AJ431344 firmicute isolate ikaite un-c22
2.30.2.1.9310 OTU 1 seq
prokMSA_id:13652 Y11567 Desulfotomaculum geothermicum str. BSD DSM 3669
2.30.2.1.9318 OTU 1 seq
prokMSA_id:13656 Y11580 Desulfotomaculum sp. DSM 7475
2.30.2.1.9315 OTU 1 seq
prokMSA_id:13654 AF069293 Desulfotomaculum luciae str. SLT SMCC W644
2.30.2.1.9320 OTU 1 seq
prokMSA_id:13657 M96665 Desulfotomaculum australicum str. AB33 ACM 3917
2.30.2.1.9324 OTU 1 seq
prokMSA_id:13659 U88891 Desulfotomaculum halophilum SEBR 3139
2.30.2.1.9342 OTU 1 seq
prokMSA_id:13661 L15628 Desulfotomaculum thermobenzoicum
2.30.2.1.9344 OTU 1 seq
prokMSA_id:13662 X91169 str. sporeA
2.30.2.1.9356 OTU 1 seq
prokMSA_id:13667 Y14845 Sporotomaculum hydroxybenzoicum str. BT DSM 5475
2.30.2.1.9354 OTU 1 seq
prokMSA_id:13666 X91170 str. sporeB
2.30.2.1.9358 OTU 1 seq
prokMSA_id:13669 AF009646 Desulfotomaculum kuznetsovii
2.30.2.1.9377 OTU 1 seq
prokMSA_id:13674 AF050588 clone WCHB1-89
2.30.2.1.9382 OTU 1 seq
prokMSA_id:13678 Y11566 Desulfotomaculum acetoxidans str. 5575 DSM 771
2.30.2.1.9399 OTU 1 seq
prokMSA_id:13682 Y11576 Desulfotomaculum sp. DSM 7213
2.30.2.1.9400 OTU 1 seq
prokMSA_id:13683 AF072863 str. strain 7
2.30.2.1.9518 OTU 1 seq
prokMSA_id:60016 AB091324 clone:JP
2.30.2.2 SYNTROPHOMONAS_ASSEMBLAGE 14 seqs
2.30.2.2.10595 OTU 1 seq
prokMSA_id:45167 AF203703 Anaerobranca bogoriae complete 
2.30.2.2.1310 OTU 1 seq
prokMSA_id:34346 AJ251214 Pelospora glutarica strain WoGl3
2.30.2.2.16353 OTU 1 seq
prokMSA_id:77374 AF482448 clone R6b2 
2.30.2.2.17067 OTU 1 seq
prokMSA_id:77473 AF482440 clone R4b14 
2.30.2.2.17361 OTU 1 seq
prokMSA_id:62405 AF529116 Gram-positive clone FTLM142 
2.30.2.2.18433 OTU 1 seq
prokMSA_id:24677 AY064218 Anaerobranca californiensis strain Paoha-1 
2.30.2.2.19601 OTU 1 seq
prokMSA_id:26077 AF286032 Saltmarsh clone LCP-89 
2.30.2.2.31115 OTU 2 seqs
prokMSA_id:77471 AF482445 clone R5p27 
prokMSA_id:77544 AF482442 clone R4b6 
2.30.2.2.9406 OTU 1 seq
prokMSA_id:13688 AF022248 Syntrophomonas wolfei str. LYB
2.30.2.2.9405 OTU 1 seq
prokMSA_id:13687 AB021306 Syntrophomonas MGB-C1 str. MGB-C1
2.30.2.2.9403 OTU 1 seq
prokMSA_id:13685 AF050585 clone WCHB1-71
2.30.2.2.9421 OTU 1 seq
prokMSA_id:13691 AB021305 str. TGB-C1
2.30.2.2.9419 OTU 1 seq
prokMSA_id:13690 AF050586 clone WCHB1-82
2.30.2.3 MOORELLA_GROUP 32 seqs
2.30.2.3.10446 OTU 1 seq
prokMSA_id:22245 AF323760 clone BA021 complete 
2.30.2.3.10742 OTU 1 seq
prokMSA_id:74641 AF507875 low G+C Gram-positive clone ML635J-9 
2.30.2.3.12693 OTU 1 seq
prokMSA_id:75551 AJ519408 clone JG37-AG-4
2.30.2.3.18040 OTU 1 seq
prokMSA_id:63105 AY093477 clone MB-C2-106 
2.30.2.3.18060 OTU 1 seq
prokMSA_id:63112 AY093469 clone MB-B2-103 
2.30.2.3.18092 OTU 1 seq
prokMSA_id:63127 AY093459 clone MA-A2-104 
2.30.2.3.19008 OTU 1 seq
prokMSA_id:62682 AF507879 low G+C Gram-positive clone ML623J-19 
2.30.2.3.19269 OTU 1 seq
prokMSA_id:77784 AJ535219 clone Hyd01-10
2.30.2.3.32908 OTU 4 seqs
prokMSA_id:13697 L09168 Moorella thermoautotrophica
prokMSA_id:13703 AJ242494 Moorella thermoacetica str. ET-5a
prokMSA_id:13704 L09168 Moorella thermoautotrophica str. JW 701/3 DSM 1974
prokMSA_id:75104 AB086398 Moorella sp. F21 cds
2.30.2.3.42942 OTU 4 seqs
prokMSA_id:13713 AF154105 clone GCA018
prokMSA_id:13714 AF154106 clone GCA025
prokMSA_id:13716 AF029050 clone SB-45
prokMSA_id:13720 AB015271 str. JTB243
2.30.2.3.4506 OTU 1 seq
prokMSA_id:72683 AF419682 CS_B013 
2.30.2.3.5845 OTU 1 seq
prokMSA_id:20457 AB062280 Thermoanaerobacter sp. ToBE 
2.30.2.3.667 OTU 1 seq
prokMSA_id:56514 AF507696 soil clone C062 
2.30.2.3.7011 OTU 1 seq
prokMSA_id:28429 AF351216 clone 12-31 
2.30.2.3.7530 OTU 1 seq
prokMSA_id:74279 AF419693 C1_B023 
2.30.2.3.770 OTU 1 seq
prokMSA_id:19248 AY053496 AT425_EubA5 
2.30.2.3.7996 OTU 1 seq
prokMSA_id:27974 AF391985 thermal soil clone YNPFFP2 
2.30.2.3.801 OTU 1 seq
prokMSA_id:63782 AY114325 Verrucomicrobia clone LD1-PA39 
2.30.2.3.9426 OTU 1 seq
prokMSA_id:13698 AF125206 clone I025
2.30.2.3.9881 OTU 1 seq
prokMSA_id:13708 U82327 Moorella glycerini str. JW/AS-Y6 DSM 11254
2.30.2.3.9884 OTU 1 seq
prokMSA_id:13709 AJ133615 clone KTK 14
2.30.2.3.9901 OTU 1 seq
prokMSA_id:13712 AF027087 clone OPB54
2.30.2.3.9906 OTU 1 seq
prokMSA_id:13715 AF029043 clone SB-15
2.30.2.3.9913 OTU 1 seq
prokMSA_id:13718 AJ131537 clone ST12
2.30.2.3.9911 OTU 1 seq
prokMSA_id:13717 AB020336 str. PB
2.30.2.3.9917 OTU 1 seq
prokMSA_id:13719 AB015269 str. JTB138
2.30.2.4 TAR.MARIANENSIS_GROUP 8 seqs
2.30.2.4.10391 OTU 1 seq
prokMSA_id:60181 AJ347028 clone TK19
2.30.2.4.14119 OTU 1 seq
prokMSA_id:76374 AF432621 clone C17.51WL 
2.30.2.4.17374 OTU 1 seq
prokMSA_id:62410 AF529103 Gram-positive clone FTL22 
2.30.2.4.30289 OTU 3 seqs
prokMSA_id:13721 AB011495 Thermaerobacter marianensis str. 7p75a
prokMSA_id:22146 AF343566 Thermaerobacter subterraneus complete 
prokMSA_id:50462 AB061441 Thermaerobacter nagasakiense 
2.30.2.4.9952 OTU 1 seq
prokMSA_id:13726 AB015578 str. BD7-2
2.30.2.4.9957 OTU 1 seq
prokMSA_id:13727 AB015272 str. JTB326
2.30.2.5 DICTYOGLOMUS_GROUP 82 seqs
2.30.2.5.1 TTR.FERRIREDUCENS_SUBGROUP 2 seqs
2.30.2.5.1.9962 OTU 1 seq
prokMSA_id:13728 U76363 Thermoterrabacterium ferrireducens
2.30.2.5.1.9976 OTU 1 seq
prokMSA_id:13730 U76364 Thermoterrabacterium ferrireducens
2.30.2.5.3 DGL.THERMOPHILUM_SUBGROUP 3 seqs
2.30.2.5.3.30670 OTU 2 seqs
prokMSA_id:13733 L39875 Dictyoglomus thermophilum str. Rt46B.1
prokMSA_id:13735 X69194 Dictyoglomus thermophilum str. H-6-12 DSM 3960
2.30.2.5.3.9982 OTU 1 seq
prokMSA_id:13732 Z14090 Dictyoglomus sp. str. Rt46-B1
2.30.2.5.4 ENVIRONMENTAL_CLONE_OPB9_SUBGROUP 6 seqs
2.30.2.5.4.10018 OTU 1 seq
prokMSA_id:13740 AF154084 clone BPC110
2.30.2.5.4.14666 OTU 1 seq
prokMSA_id:46370 AF254390 UASB_TL84 complete 
2.30.2.5.4.17019 OTU 1 seq
prokMSA_id:17280 AF323774 clone BA068 complete 
2.30.2.5.4.30684 OTU 2 seqs
prokMSA_id:13738 AF027043 clone OPB9
prokMSA_id:13739 AF027044 clone OPB34
2.30.2.5.4.8910 OTU 1 seq
prokMSA_id:75029 AJ519641 Chlorobi clone Sh765B-TzT/AG-5
2.30.2.5.5 DH.ETHENOGENES_SUBGROUP 60 seqs
2.30.2.5.5.10022 OTU 1 seq
prokMSA_id:13743 U81649 clone vadinBA26
2.30.2.5.5.10033 OTU 1 seq
prokMSA_id:13747 AF005745 clone t0.6.f
2.30.2.5.5.10031 OTU 1 seq
prokMSA_id:13746 AF005748 clone H1.4.f
2.30.2.5.5.12295 OTU 1 seq
prokMSA_id:74881 AJ519646 Chlorobi clone Sh765B-AG-111
2.30.2.5.5.12603 OTU 1 seq
prokMSA_id:76182 AJ519642 Chlorobi clone Sh765B-TzT-6
2.30.2.5.5.13462 OTU 1 seq
prokMSA_id:75600 AJ519647 Chlorobi clone Sh765B-AG-130
2.30.2.5.5.15644 OTU 1 seq
prokMSA_id:77206 AJ519643 Chlorobi clone Sh765B-TzT-20
2.30.2.5.5.16287 OTU 1 seq
prokMSA_id:53827 AF407406 clone RA13C7 
2.30.2.5.5.18038 OTU 1 seq
prokMSA_id:63104 AY093480 clone MB-C2-127 
2.30.2.5.5.18084 OTU 1 seq
prokMSA_id:63120 AY093464 clone MB-A2-110 
2.30.2.5.5.18047 OTU 1 seq
prokMSA_id:63109 AY093473 clone MB-B2-113 
2.30.2.5.5.18044 OTU 1 seq
prokMSA_id:63106 AY093479 clone MB-C2-126 
2.30.2.5.5.18094 OTU 1 seq
prokMSA_id:63128 AY093458 clone MB-A2-103 
2.30.2.5.5.18429 OTU 1 seq
prokMSA_id:31890 AF407200 clone GIF9 
2.30.2.5.5.21329 OTU 1 seq
prokMSA_id:56382 AY093456 clone MB-A2-101 
2.30.2.5.5.27044 OTU 2 seqs
prokMSA_id:13744 AF005746 clone t0.8.f
prokMSA_id:74334 AF005746 t0.8.f 
2.30.2.5.5.31254 OTU 2 seqs
prokMSA_id:13748 AF005750 clone H3.93
prokMSA_id:70341 AF005750 H3.93 
2.30.2.5.5.35280 OTU 36 seqs
prokMSA_id:18518 AF230641 CBDB1 
prokMSA_id:18992 AF388532 Dehalococcoides sp. clone DHC-bmtp 
prokMSA_id:19679 AF349755 DCE17 
prokMSA_id:20043 AF388543 Dehalococcoides sp. clone DHC-lnz 
prokMSA_id:22470 AF388537 Dehalococcoides sp. clone DHC-kafb 
prokMSA_id:23297 AF427908 clone 5G 
prokMSA_id:25537 AF388546 Dehalococcoides sp. clone DHC-nftx 
prokMSA_id:25968 AF388539 Dehalococcoides sp. clone DHC-kb1C 
prokMSA_id:26309 AF388542 Dehalococcoides sp. clone DHC-lf13 
prokMSA_id:29355 AF357918 Dehalococcoides sp. FL2 
prokMSA_id:29714 AF427909 clone 12G 
prokMSA_id:31094 AF388540 Dehalococcoides sp. clone DHC-kb1P 
prokMSA_id:31301 AF388530 Dehalococcoides sp. clone DHC-asd 
prokMSA_id:31803 AF388536 Dehalococcoides sp. clone DHC-dll 
prokMSA_id:33280 AF388549 Dehalococcoides sp. clone DHC-plk 
prokMSA_id:34971 AF388534 Dehalococcoides sp. clone DHC-chd 
prokMSA_id:39818 AF388533 Dehalococcoides sp. clone DHC-bmtv 
prokMSA_id:41208 AF427912 clone 8a 
prokMSA_id:45038 AF388550 Dehalococcoides sp. clone DHC-vic 
prokMSA_id:45091 AF388548 Dehalococcoides sp. clone DHC-pin 
prokMSA_id:45746 AF388541 Dehalococcoides sp. clone DHC-klf 
prokMSA_id:48395 AF388535 Dehalococcoides sp. clone DHC-dab 
prokMSA_id:48806 AF427907 clone 4D 
prokMSA_id:50281 AF388531 Dehalococcoides sp. clone DHC-bmtc 
prokMSA_id:51551 AF427937 clone 5H 
prokMSA_id:55484 AY133097 Dehalococcoides sp. clone ccslm5 
prokMSA_id:59912 AY133080 Dehalococcoides sp. clone ccslm202 
prokMSA_id:62397 AF529119 Dehalococcoides sp. clone FTLM182 
prokMSA_id:71949 AJ249262 DCEH2 
prokMSA_id:74423 AF004928 Dehalococcoides ethenogenes 
prokMSA_id:76593 AY165308 Dehalococcoides sp. BAV1 
prokMSA_id:79135 AY185324 Dehalococcoides sp. clone AKS31 
prokMSA_id:79207 AY185317 Dehalococcoides sp. clone ARC61 
prokMSA_id:79293 AY185320 Dehalococcoides sp. clone AKS14 
prokMSA_id:79375 AY185314 Dehalococcoides sp. clone ARC18 
prokMSA_id:79443 AY185313 Dehalococcoides sp. clone ARC13 
2.30.2.5.5.6670 OTU 1 seq
prokMSA_id:74169 AF524015 clone FW60 
2.30.2.5.5.7119 OTU 1 seq
prokMSA_id:82007 AY218649 clone KD4-96 
2.30.2.5.5.73 OTU 1 seq
prokMSA_id:56484 AJ347041 clone TK30
2.30.2.5.5.8011 OTU 1 seq
prokMSA_id:82136 AY217439 MTCE-T2 10H 
2.30.2.5.5.9476 OTU 1 seq
prokMSA_id:35933 AF407195 clone GIF3 
2.30.2.5.6 ENVIRONMENTAL_CLONE_SAR202_SUBGROUP 11 seqs
2.30.2.5.6.10062 OTU 1 seq
prokMSA_id:13753 U20797 Sargasso Sea Bermuda Atlantic Time-Series Study clone SAR 20
2.30.2.5.6.10055 OTU 1 seq
prokMSA_id:13750 U20798 Sargasso Sea Bermuda Atlantic Time-Series Study clone SAR 30
2.30.2.5.6.10060 OTU 1 seq
prokMSA_id:13752 AF186417 clone WS52f
2.30.2.5.6.10795 OTU 1 seq
prokMSA_id:74658 AF529110 Chloroflexi clone FTL276 
2.30.2.5.6.20558 OTU 1 seq
prokMSA_id:78515 AJ536892 clone JG30-KF-CM66
2.30.2.5.6.6325 OTU 1 seq
prokMSA_id:65684 AF507700 soil clone C083 
2.30.2.5.6.6341 OTU 1 seq
prokMSA_id:65691 AF507693 soil clone S085 
2.30.2.5.6.8285 OTU 1 seq
prokMSA_id:44260 AF316763 Crater Lake CL500-9 
2.30.2.5.6.8375 OTU 1 seq
prokMSA_id:20758 AF355053 Chloroflexaceae group Arctic96BD-6 
2.30.2.5.6.9112 OTU 1 seq
prokMSA_id:74429 AF005747 H1.2.f 
2.30.2.5.6.9174 OTU 1 seq
prokMSA_id:21495 AF355054 Chloroflexaceae group Arctic95A-18 
2.30.2.6 THERMOANAEROBACTER_GROUP 53 seqs
2.30.2.6.1 TBM.THERMOSULFURIGENES_SUBGROUP 9 seqs
2.30.2.6.1.10066 OTU 1 seq
prokMSA_id:13757 L09171 Thermoanaerobacterium thermosulfurigenes str. 4B ATCC 33743
2.30.2.6.1.10081 OTU 1 seq
prokMSA_id:13763 X93359 Thermoanaerobacterium aotearoense str. JW/SL-NZ613
2.30.2.6.1.10079 OTU 1 seq
prokMSA_id:13762 X76743 Clostridium thermoamylolyticum DSM 2335
2.30.2.6.1.10075 OTU 1 seq
prokMSA_id:13760 L09170 Thermoanaerobium "lactoethylicum" str. ZE-1 DSM 9003
2.30.2.6.1.10078 OTU 1 seq
prokMSA_id:13761 L09169 Thermoanaerobacterium saccharolyticum str. B6A-RI; B6A DSM 7
2.30.2.6.1.28138 OTU 2 seqs
prokMSA_id:36077 AF280836 tbr4-78 
prokMSA_id:36399 AF280823 tbr1-8 
2.30.2.6.1.4688 OTU 1 seq
prokMSA_id:27592 AF247003 Thermoanaerobacterium thermosaccharolyticum strain D120-70 c
2.30.2.6.1.7624 OTU 1 seq
prokMSA_id:59208 AY140670 Thermoanaerobacterium bryantii 
2.30.2.6.2 THERMOANAEROBACTER.KIVUI 3 seqs
2.30.2.6.2.10084 OTU 1 seq
prokMSA_id:13765 L09160 Thermoanaerobacter kivui DSM 2030
2.30.2.6.2.1269 OTU 1 seq
prokMSA_id:34323 Y18182 Clostridium uzonii strain DSM 9752
2.30.2.6.2.9472 OTU 1 seq
prokMSA_id:66678 AE013109 Thermoanaerobacter tengcongensis strain MB4T section 136 of 
2.30.2.6.3 TAB.ETHANOLICUS_SUBGROUP 14 seqs
2.30.2.6.3.10108 OTU 1 seq
prokMSA_id:13772 L09162 Thermoanaerobacter ethanolicus str. JW200 ATCC 31550
2.30.2.6.3.12362 OTU 1 seq
prokMSA_id:29733 AF234164 Thermoanaerobacter sulfurigignens 
2.30.2.6.3.31298 OTU 2 seqs
prokMSA_id:13773 L23477 Clostridium sp. str. AZ3 B.1
prokMSA_id:13774 L09161 Thermoanaerobacter thermohydrosulfuricus str. E100-69 DSM 56
2.30.2.6.3.31489 OTU 7 seqs
prokMSA_id:13775 AJ133616 clone KTK 27
prokMSA_id:13776 AJ133619 clone KTK 41
prokMSA_id:22143 AJ347771 KB1 group clone ST-3K7
prokMSA_id:32063 AJ347773 KB1 group clone ST-12K21
prokMSA_id:32158 AJ347772 KB1 group clone ST-3K22
prokMSA_id:40722 AJ347769 KB1 group clone ST-12K35
prokMSA_id:42260 AJ347770 KB1 group clone ST-3K6
2.30.2.6.3.31759 OTU 3 seqs
prokMSA_id:13766 X92513 Thermoanaerobacter wiegelii str. Rt8.B1
prokMSA_id:13767 U51198 Thermoanaerobacter sp. str. AB11 Ad
prokMSA_id:13768 Y16940 Thermoanaerobacter sulfurophilus str. L-64 DSM 11584
2.30.2.6.4 TAB.THERMOCOPRIAE_SUBGROUP 13 seqs
2.30.2.6.4.10120 OTU 1 seq
prokMSA_id:13779 AF068811 VC2.1 Bac48 complete 
2.30.2.6.4.10150 OTU 1 seq
prokMSA_id:13786 AF068799 clone VC2.1 Bac23
2.30.2.6.4.10151 OTU 1 seq
prokMSA_id:13787 AF068800 VC2.1 Bac24 complete 
2.30.2.6.4.10138 OTU 1 seq
prokMSA_id:13781 Y11279 Thermoanaerobacter mathranii str. A3 DSM 11426
2.30.2.6.4.14154 OTU 1 seq
prokMSA_id:39086 AJ132733 CHA3-117 clone CHA3-117
2.30.2.6.4.31300 OTU 2 seqs
prokMSA_id:13778 L09167 Thermoanaerobacter thermocopriae str. JT-3 IAM 13577
prokMSA_id:13780 L09167 Thermoanaerobacter thermocopriae str. JT-3 IAM 13577
2.30.2.6.4.34028 OTU 5 seqs
prokMSA_id:13782 AF068784 VC2.1 Bac2 complete 
prokMSA_id:13783 AF068785 clone VC2.1 Bac3
prokMSA_id:13784 AF068787 VC2.1 Bac5 complete 
prokMSA_id:13785 AF068793 VC2.1 Bac13 complete 
prokMSA_id:13788 AF068808 VC2.1 Bac34 complete 
2.30.2.6.4.7787 OTU 1 seq
prokMSA_id:28514 AJ132734 CHA3-125 clone CHA3-125
2.30.2.6.5 TAB.BROCKII_SUBGROUP 14 seqs
2.30.2.6.5.10187 OTU 1 seq
prokMSA_id:13793 U14330 Thermoanaerobacter brockii subsp. lactiethylicus DSM 9801
2.30.2.6.5.14027 OTU 1 seq
prokMSA_id:39044 AF174484 Carboxydobrachium pacificus 
2.30.2.6.5.33464 OTU 4 seqs
prokMSA_id:13789 L09164 Thermoanaerobacter ethanolicus str. 39E ATCC 33223
prokMSA_id:13790 L09165 Thermoanaerobacter brockii str. HTD4 DSM 1457
prokMSA_id:13792 L09166 Thermoanaerobacter brockii subsp. finnii str. AKo-1 DSM 3389
prokMSA_id:59098 AF542521 Thermoanaerobacter ethanolicus strain X524 
2.30.2.6.5.42020 OTU 2 seqs
prokMSA_id:16510 AF209708 Thermoanaerobacter tengcongensis 
prokMSA_id:66680 AE012982 Thermoanaerobacter tengcongensis strain MB4T section 9 of 24
2.30.2.6.5.42796 OTU 3 seqs
prokMSA_id:59095 AF542519 Thermoanaerobacter ethanolicus strain X521 
prokMSA_id:59096 AF542517 Thermoanaerobacter ethanolicus strain X514 
prokMSA_id:59097 AF542518 Thermoanaerobacter ethanolicus strain X561 
2.30.2.6.5.4760 OTU 1 seq
prokMSA_id:26976 AF212925 Thermoanaerobacter yonseii 
2.30.2.6.5.9470 OTU 1 seq
prokMSA_id:66677 AE013169 Thermoanaerobacter tengcongensis strain MB4T section 196 of 
2.30.2.6.5.9481 OTU 1 seq
prokMSA_id:66681 AE012979 Thermoanaerobacter tengcongensis strain MB4T section 6 of 24
2.30.3 SPOROMUSA_AND_RELATIVES 254 seqs
2.30.3.1 SPOROMUSA_GROUP 169 seqs
2.30.3.1.1 SLN.RUMINA_SUBGROUP 65 seqs
2.30.3.1.1.10190 OTU 1 seq
prokMSA_id:13799 AF161581 Selenomonas ruminantium str. K2
2.30.3.1.1.1064 OTU 1 seq
prokMSA_id:48795 AB034135 rumen 4C28d-2 
2.30.3.1.1.10715 OTU 1 seq
prokMSA_id:13804 AF001737 clone RF4
2.30.3.1.1.10711 OTU 1 seq
prokMSA_id:13803 Y09434 Schwartzia succinivorans str. S1-1 DSM 10502
2.30.3.1.1.10743 OTU 1 seq
prokMSA_id:13813 AF001774 clone RFP7
2.30.3.1.1.10747 OTU 1 seq
prokMSA_id:13815 AB009216 clone RFN69
2.30.3.1.1.10769 OTU 1 seq
prokMSA_id:51787 AF385502 Selenomonas sp. oral clone EW079 
2.30.3.1.1.10974 OTU 1 seq
prokMSA_id:29533 Y18190 Propionispira arboris strain DSM 2179
2.30.3.1.1.11896 OTU 1 seq
prokMSA_id:22425 AF287796 Selenomonas sp. oral clone CS024 
2.30.3.1.1.12017 OTU 1 seq
prokMSA_id:21823 AF371704 clone p-2858-6C5 
2.30.3.1.1.13453 OTU 1 seq
prokMSA_id:45515 AB034051 rumen 5C0d-24 
2.30.3.1.1.13761 OTU 1 seq
prokMSA_id:37768 AJ420107 Megamonas hypermegale strain DSM 1672T
2.30.3.1.1.1460 OTU 1 seq
prokMSA_id:40982 AF373022 Selenomonas ruminatium 
2.30.3.1.1.16135 OTU 1 seq
prokMSA_id:32169 AB034082 rumen 4C3d-9 
2.30.3.1.1.16177 OTU 1 seq
prokMSA_id:31559 AB034084 rumen 6C3d-34 
2.30.3.1.1.16766 OTU 1 seq
prokMSA_id:31620 AF287792 Selenomonas-like sp. oral strain FNA3 
2.30.3.1.1.16994 OTU 1 seq
prokMSA_id:24490 AF373024 Selenomonas lacticifex 
2.30.3.1.1.17346 OTU 1 seq
prokMSA_id:38984 AB034191 Anaerovibrio lipolytica 
2.30.3.1.1.17612 OTU 1 seq
prokMSA_id:31775 AB034078 rumen 3C3d-9 
2.30.3.1.1.17735 OTU 1 seq
prokMSA_id:17375 AB034138 rumen 4C28d-14 
2.30.3.1.1.18155 OTU 1 seq
prokMSA_id:33071 AF366273 Selenomonas sp. clone DS051 
2.30.3.1.1.20185 OTU 1 seq
prokMSA_id:39975 AF366274 Selenomonas sp. clone DS071 
2.30.3.1.1.20223 OTU 1 seq
prokMSA_id:70619 AF287797 Selenomonas sp. oral clone AA024 
2.30.3.1.1.21083 OTU 1 seq
prokMSA_id:33404 AB034031 rumen 4C0d-18 
2.30.3.1.1.21966 OTU 1 seq
prokMSA_id:70887 AF385501 Selenomonas sp. oral clone EW076 
2.30.3.1.1.26247 OTU 2 seqs
prokMSA_id:16970 AF287800 Selenomonas sp. oral clone AJ036 
prokMSA_id:72580 AF385576 Selenomonas sp. oral clone EY047 
2.30.3.1.1.2836 OTU 1 seq
prokMSA_id:41729 AF371699 clone p-4726-2Wb2 
2.30.3.1.1.2895 OTU 1 seq
prokMSA_id:27326 AB034132 rumen 3C28d-7 
2.30.3.1.1.31970 OTU 3 seqs
prokMSA_id:22408 AB034129 rumen 3C28d-2 
prokMSA_id:38382 AB034131 rumen 3C28d-11 
prokMSA_id:41385 AB034130 rumen 3C28d-9 
2.30.3.1.1.33151 OTU 3 seqs
prokMSA_id:40840 AF287799 Selenomonas noxia 
prokMSA_id:71192 AF287798 Selenomonas noxia-like sp. oral clone CI002 
prokMSA_id:72188 AF385495 Selenomonas sp. oral clone EQ054 
2.30.3.1.1.33565 OTU 3 seqs
prokMSA_id:23591 AF287790 Selenomonas-like sp. oral clone DM071 
prokMSA_id:42552 AF385578 Selenomonas sp. oral clone EZ011 
prokMSA_id:43268 AF287789 Selenomonas-like sp. oral strain GAA14 
2.30.3.1.1.34373 OTU 5 seqs
prokMSA_id:17310 AF373023 Selenomonas sputingena 
prokMSA_id:22780 AF385497 Selenomonas sp. oral clone EW051a 
prokMSA_id:31951 AF287793 Selenomonas sputigena 
prokMSA_id:52640 AF287794 Selenomonas sp. oral clone DD020 
prokMSA_id:73837 AJ289175 E1-K17 
2.30.3.1.1.39972 OTU 7 seqs
prokMSA_id:13800 M62703 Selenomonas ruminantium subsp. lactilytica str. HD4
prokMSA_id:13812 AB003379 Selenomonas ruminantium subsp. lactilytica JCM 6582
prokMSA_id:13814 AB009188 clone RFN3
prokMSA_id:13816 AB017195 Selenomonas ruminantium str. S20
prokMSA_id:29567 AF221598 Selenomonas ruminantium isolate EAT2 
prokMSA_id:39424 AF221599 Selenomonas ruminantium isolate EG19 
prokMSA_id:45161 AF221600 Selenomonas ruminantium isolate ES3 
2.30.3.1.1.40692 OTU 3 seqs
prokMSA_id:42483 AF287802 Selenomonas infelix 
prokMSA_id:59529 AF538861 Selenomonas sp. oral clone P4PA_36 P2 
prokMSA_id:70073 AF385492 Selenomonas sp. oral clone DY027 
2.30.3.1.1.4346 OTU 1 seq
prokMSA_id:28118 AF287804 Selenomonas flueggei-like sp. clone AH132 
2.30.3.1.1.490 OTU 1 seq
prokMSA_id:72198 AF357557 mpn-isolate group 9 
2.30.3.1.1.5187 OTU 1 seq
prokMSA_id:43296 AB034083 rumen 6C3d-30 
2.30.3.1.1.5604 OTU 1 seq
prokMSA_id:51109 AB034140 rumen 2C28d-11 
2.30.3.1.1.567 OTU 1 seq
prokMSA_id:41482 AF479674 Mitsuokella jalaludinii strain M9 complete 
2.30.3.1.1.6394 OTU 1 seq
prokMSA_id:34987 AF371701 clone p-2365-55G5 
2.30.3.1.1.6705 OTU 1 seq
prokMSA_id:74175 AF287795 Selenomonas sp. oral clone CS002 
2.30.3.1.1.6939 OTU 1 seq
prokMSA_id:29056 AF385503 Selenomonas sp. oral clone EW084 
2.30.3.1.1.6957 OTU 1 seq
prokMSA_id:72926 AF371703 clone p-73-a5 
2.30.3.1.1.7363 OTU 1 seq
prokMSA_id:21285 AF287791 Selenomonas-like sp. oral clone CS015 
2.30.3.1.1.9361 OTU 1 seq
prokMSA_id:37190 AF373027 Pectinatus frisingensis 
2.30.3.1.1.9363 OTU 1 seq
prokMSA_id:36536 AF371702 clone p-365-a3 
2.30.3.1.2 VLN.PARVULA_SUBGROUP 52 seqs
2.30.3.1.2.10793 OTU 1 seq
prokMSA_id:13828 L37040 Megasphaera cerevisiae str. VTT-E-85230
2.30.3.1.2.12731 OTU 1 seq
prokMSA_id:68342 AF481223 Megasphaera sp. oral clone MCE3_141 P1 
2.30.3.1.2.13956 OTU 1 seq
prokMSA_id:23368 AF473837 Dialister sp. ADV 04.01 
2.30.3.1.2.16326 OTU 1 seq
prokMSA_id:77363 AF349425 A4 
2.30.3.1.2.18326 OTU 1 seq
prokMSA_id:55383 AF481210 Dialister sp. oral clone MCE7_134 E2 
2.30.3.1.2.20088 OTU 1 seq
prokMSA_id:41128 AF287785 Megasphaera sp. oral clone BS073 
2.30.3.1.2.20074 OTU 1 seq
prokMSA_id:71202 AF287786 Dialister sp. oral clone BS016 
2.30.3.1.2.24306 OTU 13 seqs
prokMSA_id:13829 M26493 Megasphaera elsdenii str. B159 ATCC 17752
prokMSA_id:20064 AF371696 clone p-1934-s962-3 
prokMSA_id:20560 U95027 Megasphaera elsdenii ATCC 25940 
prokMSA_id:24370 AY038996 Megasphaera elsdenii strain YJ-4 
prokMSA_id:25188 AY038993 Megasphaera elsdenii strain JL1 
prokMSA_id:36860 U95028 Megasphaera elsdenii S2 
prokMSA_id:46322 AB034085 rumen 3C3d-7 
prokMSA_id:50822 AB034086 rumen 5C3d-9 
prokMSA_id:52166 AB034087 rumen 3C3d-18 
prokMSA_id:53032 U95029 Megasphaera elsdenii S3 
prokMSA_id:71785 AY038995 Megasphaera elsdenii strain T81 
prokMSA_id:74182 AF283705 Megasphaera elsdenii strain La03 
prokMSA_id:81738 AY196919 Megasphaera elsdenii strain 7-11 
2.30.3.1.2.24937 OTU 3 seqs
prokMSA_id:13823 AF186071 Veillonella ratti ATCC 17746
prokMSA_id:13824 AF186072 Veillonella criceti ATCC 17747
prokMSA_id:82021 AY211542 Veillonella ratti strain ADV4313.2 
2.30.3.1.2.29377 OTU 2 seqs
prokMSA_id:35000 AF287783 Megasphaera sp. oral clone BB166 
prokMSA_id:43739 AF338413 Anaerococcus geminatus 
2.30.3.1.2.31379 OTU 2 seqs
prokMSA_id:28862 AF473833 Anaerosphaera nuciformis strain AIP 49.01 
prokMSA_id:74093 AF385566 Megasphaera sp. oral clone BU057 
2.30.3.1.2.32641 OTU 3 seqs
prokMSA_id:13825 Z36297 sp. str. SC -5
prokMSA_id:13826 U13040 sp. str. SC 3D
prokMSA_id:13827 X82500 Dialister pneumosintes ATCC 33048
2.30.3.1.2.32822 OTU 9 seqs
prokMSA_id:13820 X84006 Veillonella dispar DSM 20735
prokMSA_id:13822 X84007 Veillonella atypica DSM 20739
prokMSA_id:21762 AF287782 Veillonella sp. oral clone AA050 
prokMSA_id:25275 AF439639 Veillonella dispar 
prokMSA_id:30716 AF439640 Veillonella parvula 
prokMSA_id:33416 AF287781 Veillonella sp. oral clone X042 
prokMSA_id:35224 AF439641 Veillonella atypica 
prokMSA_id:40553 AF366266 Veillonella sp. clone BU083 
prokMSA_id:54075 AF371939 clone p-5279-2Wa3 
2.30.3.1.2.33020 OTU 4 seqs
prokMSA_id:32378 AB034146 rumen 2C28d-8 
prokMSA_id:37391 AF371695 clone p-1740-b3 
prokMSA_id:48207 AF371694 clone p-1941-s962-3 
prokMSA_id:52521 AF371693 clone p-922-s962-5 
2.30.3.1.2.34258 OTU 4 seqs
prokMSA_id:59563 AY134907 Dialister sp. oral clone FY011 
prokMSA_id:68355 AF481209 Dialister sp. E2_20 E1 oral isolate 
prokMSA_id:70158 AF287788 Dialister sp. oral strain GBA27 
prokMSA_id:72316 AF287787 Dialister sp. oral clone BS095 
2.30.3.1.2.3910 OTU 1 seq
prokMSA_id:26894 AF473836 Veillonella sp. ADV 281.99 
2.30.3.1.2.42505 OTU 2 seqs
prokMSA_id:32722 AB034144 rumen 4C28d-7 
prokMSA_id:39342 AB034145 rumen 4C28d-10 
2.30.3.1.2.4552 OTU 1 seq
prokMSA_id:58262 AF548373 Allisonella histaminiformans 
2.30.3.1.2.6289 OTU 1 seq
prokMSA_id:28369 AJ409007 clone HuCB85
2.30.3.1.3 SPM.PAUCIVORANS_SUBGROUP 32 seqs
2.30.3.1.3.10840 OTU 1 seq
prokMSA_id:13840 AJ009459 clone SJA-29
2.30.3.1.3.10822 OTU 1 seq
prokMSA_id:13837 AJ010960 Anaerovibrio glycerini DSM 5192
2.30.3.1.3.10825 OTU 1 seq
prokMSA_id:13839 AJ010964 Acetonema longum str. APO-1 DSM 6540
2.30.3.1.3.10847 OTU 1 seq
prokMSA_id:13843 AJ009494 clone SJA-143
2.30.3.1.3.10843 OTU 1 seq
prokMSA_id:13841 AJ009477 clone SJA-84
2.30.3.1.3.10861 OTU 1 seq
prokMSA_id:13850 AJ229242 str. SB90
2.30.3.1.3.10845 OTU 1 seq
prokMSA_id:13842 AJ009486 clone SJA-112
2.30.3.1.3.10882 OTU 1 seq
prokMSA_id:36727 AJ229183 from anoxic bulk soil clone BSV16
2.30.3.1.3.13104 OTU 1 seq
prokMSA_id:31050 AJ279798 Sporomusa acidovorans strain DSM 3132 
2.30.3.1.3.13181 OTU 1 seq
prokMSA_id:31092 AJ279802 Propionispora vibrioides isolate FKBS1
2.30.3.1.3.13837 OTU 1 seq
prokMSA_id:60600 AF407698 clone G07 
2.30.3.1.3.13849 OTU 1 seq
prokMSA_id:23304 AJ279800 Sporomusa ovata strain DSM 2662 
2.30.3.1.3.1638 OTU 1 seq
prokMSA_id:79562 AY185322 clone AKS21 
2.30.3.1.3.18145 OTU 1 seq
prokMSA_id:70372 AY114315 candidate division BRC1 clone LD1-PA21 
2.30.3.1.3.18526 OTU 1 seq
prokMSA_id:16834 AJ229233 from anoxic bulk soil clone BSV90
2.30.3.1.3.19226 OTU 1 seq
prokMSA_id:77768 AJ508927 Propionispora hippei clone 5
2.30.3.1.3.21659 OTU 1 seq
prokMSA_id:72075 AF275913 AA01 
2.30.3.1.3.26190 OTU 2 seqs
prokMSA_id:13847 Y17763 Sporomusa DR1/8 str. DR1/8
prokMSA_id:21147 AJ279799 Sporomusa malonica strain DSM 5090 
2.30.3.1.3.31842 OTU 3 seqs
prokMSA_id:13838 AJ010961 Anaerovibrio burkinabensis DSM 6283
prokMSA_id:33760 AF349762 TCE33 
prokMSA_id:66184 AJ488080 clone IB-27
2.30.3.1.3.3919 OTU 1 seq
prokMSA_id:81047 AY218598 clone KD2-97 
2.30.3.1.3.42406 OTU 2 seqs
prokMSA_id:66173 AJ488091 clone IIIA-10
prokMSA_id:66174 AJ488090 clone IIIA-1
2.30.3.1.3.42474 OTU 2 seqs
prokMSA_id:66181 AJ488084 clone IIA-26
prokMSA_id:72034 AJ488098 clone IIIB-2
2.30.3.1.3.42925 OTU 2 seqs
prokMSA_id:60705 AJ506192 Sporomusa aerovorans strain TMAM3
prokMSA_id:60709 AJ506191 Sporomusa aerovorans strain TMAO3
2.30.3.1.3.932 OTU 1 seq
prokMSA_id:25868 AJ279801 Sporomusa sphaeroides strain DSM 2875 
2.30.3.1.3.9696 OTU 1 seq
prokMSA_id:82350 AY214180 clone ZZ12C4 
2.30.3.1.3.9836 OTU 1 seq
prokMSA_id:20905 AF275924 AA56 
2.30.3.1.4 PHA.FAECIUM_SUBGROUP 20 seqs
2.30.3.1.4.10871 OTU 1 seq
prokMSA_id:13856 AB009182 clone RFN24
2.30.3.1.4.10895 OTU 1 seq
prokMSA_id:13861 U81750 clone vadinHB04
2.30.3.1.4.14283 OTU 1 seq
prokMSA_id:45688 AF371705 clone p-286-a3 
2.30.3.1.4.1624 OTU 1 seq
prokMSA_id:25947 AF371708 clone p-3420-SwA2 
2.30.3.1.4.18103 OTU 1 seq
prokMSA_id:33044 AF371707 clone p-2464-18B5 
2.30.3.1.4.25386 OTU 2 seqs
prokMSA_id:69824 AF132234 adhufec395 
prokMSA_id:73552 AF530309 clone cadhufec079h7 
2.30.3.1.4.26196 OTU 2 seqs
prokMSA_id:13852 X78017 Acidaminococcus fermentans str. VR4 DSM 20731
prokMSA_id:13853 X77951 Acidaminococcus fermentans str. AO
2.30.3.1.4.26197 OTU 2 seqs
prokMSA_id:13855 X81137 Succiniclasticum ruminis str. SE10 DSM 9236
prokMSA_id:13857 AB009201 clone RFN45
2.30.3.1.4.26202 OTU 3 seqs
prokMSA_id:13858 X72865 Phascolarctobacterium faecium ACM 3679
prokMSA_id:13859 X72866 Phascolarctobacterium faecium ACM 3681
prokMSA_id:13860 X72867 Phascolarctobacterium faecium ACM 3680
2.30.3.1.4.30230 OTU 2 seqs
prokMSA_id:22697 AB034143 rumen 4C28d-16 
prokMSA_id:28188 AB034141 rumen 3C28d-10 
2.30.3.1.4.3084 OTU 1 seq
prokMSA_id:20105 AF473835 Acidaminococcus sp. ADV 255.99 
2.30.3.1.4.34554 OTU 2 seqs
prokMSA_id:66171 AJ488094 clone IIIA-4
prokMSA_id:66179 AJ488085 clone IIA-29
2.30.3.1.4.8701 OTU 1 seq
prokMSA_id:29289 AF280848 mle1-9 
2.30.3.2 HELIOBACTERIUM_GROUP 84 seqs
2.30.3.2.1 DFI.DEHALOGENANS_SUBGROUP 68 seqs
2.30.3.2.1.10217 OTU 1 seq
prokMSA_id:29453 AF371709 clone p-2785-24E5 
2.30.3.2.1.10364 OTU 1 seq
prokMSA_id:28888 AF297871 Desulfitobacterium metallireducens 
2.30.3.2.1.10701 OTU 1 seq
prokMSA_id:81849 AY214183 clone ZZ12C8 
2.30.3.2.1.10908 OTU 1 seq
prokMSA_id:13866 AB009212 clone RFN65
2.30.3.2.1.10949 OTU 1 seq
prokMSA_id:13879 AJ009489 clone SJA-118
2.30.3.2.1.10944 OTU 1 seq
prokMSA_id:13873 AF050591 clone WCHB1-84
2.30.3.2.1.10943 OTU 1 seq
prokMSA_id:13872 AF050590 clone WCHB1-77
2.30.3.2.1.10938 OTU 1 seq
prokMSA_id:13870 Y11570 Desulfosporosinus orientis str. Singapore I DSM 765
2.30.3.2.1.10969 OTU 1 seq
prokMSA_id:13883 AF159121 Desulfosporosinus Blif str. Blif
2.30.3.2.1.10966 OTU 1 seq
prokMSA_id:13880 AJ009503 clone SJA-173
2.30.3.2.1.10994 OTU 1 seq
prokMSA_id:13890 Y11571 Desulfosporosinus orientis DSM 8344
2.30.3.2.1.10997 OTU 1 seq
prokMSA_id:13893 X55797 Peptococcus niger
2.30.3.2.1.10970 OTU 1 seq
prokMSA_id:13884 AF159120 Desulfosporosinus 5apy str. 5apy
2.30.3.2.1.10998 OTU 1 seq
prokMSA_id:13894 X99706 Syntrophobotulus glycolicus str. FlGlyR
2.30.3.2.1.11482 OTU 1 seq
prokMSA_id:13900 X81032 Desulfitobacterium sp. str. PCE1
2.30.3.2.1.11765 OTU 1 seq
prokMSA_id:29646 AB034035 rumen 3C0d-20 
2.30.3.2.1.12095 OTU 1 seq
prokMSA_id:51930 AF351223 low G+C Gram-positive clone 36-28 
2.30.3.2.1.13060 OTU 1 seq
prokMSA_id:59920 AY133077 low G+C Gram-positive clone ccs270 
2.30.3.2.1.13811 OTU 1 seq
prokMSA_id:31142 AF351218 low G+C Gram-positive clone 36-3 
2.30.3.2.1.14187 OTU 1 seq
prokMSA_id:38434 AJ306706 Desulfosporosinus sp. ML7-SRB15 strain ML7-SRB15
2.30.3.2.1.15094 OTU 1 seq
prokMSA_id:23528 AJ242834 Thermophilic JA2 
2.30.3.2.1.15746 OTU 1 seq
prokMSA_id:46527 AF280849 mle1-12 
2.30.3.2.1.17575 OTU 1 seq
prokMSA_id:78152 AB089018 Clostridiaceae clone:Rs-H17
2.30.3.2.1.17705 OTU 1 seq
prokMSA_id:23926 AB062775 clone:BCf10-04
2.30.3.2.1.18062 OTU 1 seq
prokMSA_id:63113 AY093470 clone MB-B2-105 
2.30.3.2.1.18247 OTU 1 seq
prokMSA_id:78210 AB088985 Clostridiaceae clone:Rs-K66
2.30.3.2.1.18927 OTU 1 seq
prokMSA_id:63299 AF523919 clone RCP2-71 
2.30.3.2.1.1915 OTU 1 seq
prokMSA_id:72325 AY082482 Desulfosporosinus sp. 44a-T3a 
2.30.3.2.1.19533 OTU 1 seq
prokMSA_id:26036 AF414568 clone P3IB-51 
2.30.3.2.1.20358 OTU 1 seq
prokMSA_id:40595 AJ229187 from anoxic bulk soil clone BSV24
2.30.3.2.1.21918 OTU 1 seq
prokMSA_id:70866 AJ302078 Desulfosporosinus sp. LauIII isolate LauIII
2.30.3.2.1.2298 OTU 1 seq
prokMSA_id:56724 AF507702 soil clone C0133 
2.30.3.2.1.26983 OTU 2 seqs
prokMSA_id:13877 AF076527 Desulfosporosinus S10 str. S10
prokMSA_id:63750 AJ493051 Desulfotomaculum auripigmentum strain DSMZ 13351
2.30.3.2.1.28896 OTU 2 seqs
prokMSA_id:33994 AY050591 clone GOUTB3 
prokMSA_id:50913 AY050581 clone GOUTA9 
2.30.3.2.1.31767 OTU 8 seqs
prokMSA_id:13863 U40078 Desulfitobacterium frappieri str. PCP-1
prokMSA_id:13865 U68528 Desulfitobacterium chlororespirans str. Co23
prokMSA_id:13867 X95972 Desulfitobacterium sp
prokMSA_id:13901 X94975 Desulfitobacterium hafniense str. DCB-2
prokMSA_id:13902 X95742 Desulfitobacterium sp. str. TCE1
prokMSA_id:45375 AJ276701 Desulfitobacterium frappieri strain DP7
prokMSA_id:46485 AB049340 Desulfitobacterium sp. Y51 
prokMSA_id:72154 AF320982 Desulfitobacterium frappieri strain G2 
2.30.3.2.1.32112 OTU 2 seqs
prokMSA_id:13896 AJ009454 clone SJA-19
prokMSA_id:72453 AJ249096 SHA-67 
2.30.3.2.1.33701 OTU 3 seqs
prokMSA_id:42091 AF287780 Peptococcus-like sp. oral clone I070 
prokMSA_id:68340 AF481224 Peptococcus sp. oral clone MCE10_265 E1 
prokMSA_id:70151 AJ289179 E1-K16 
2.30.3.2.1.41469 OTU 3 seqs
prokMSA_id:13876 AF076526 Desulfosporosinus T2 str. T2
prokMSA_id:13888 AF076247 Desulfosporosinus S8 str. S8
prokMSA_id:25249 AF427080 Desulfosporosinus sp. P3 
2.30.3.2.1.42276 OTU 9 seqs
prokMSA_id:13897 AJ009464 clone SJA-47
prokMSA_id:13898 U84497 Dehalobacter restrictus str. PER-K23
prokMSA_id:13899 Y10164 Dehalobacter restrictus str. TEA
prokMSA_id:22205 AF422637 clone d025 
prokMSA_id:29474 AF422677 clone d154 
prokMSA_id:56444 AJ306804 clone SHD-17
prokMSA_id:65484 AJ278164 Dehalobacter sp. SHD-11 
prokMSA_id:66193 AJ488071 clone IA-18
prokMSA_id:69301 AF507944 Dehalobacter sp. TCA1 
2.30.3.2.1.4763 OTU 1 seq
prokMSA_id:81121 AY214172 clone ZZ9C1 
2.30.3.2.1.6123 OTU 1 seq
prokMSA_id:36188 AY007667 Desulfosporosinus sp. PFB 
2.30.3.2.1.6716 OTU 1 seq
prokMSA_id:50658 AF357919 Desulfitobacterium sp. Viet-1 
2.30.3.2.1.6783 OTU 1 seq
prokMSA_id:20587 AY007666 Desulfosporosinus sp. P1 
2.30.3.2.1.704 OTU 1 seq
prokMSA_id:63748 AJ493052 Desulfosporosinus orientis strain DSMZ 7493
2.30.3.2.1.7395 OTU 1 seq
prokMSA_id:81460 AY214191 clone ZZ14C3 
2.30.3.2.1.8157 OTU 1 seq
prokMSA_id:74312 AF414575 clone P3IB-3 
2.30.3.2.2 DFM.RUMINIS_SUBGROUP 13 seqs
2.30.3.2.2.11492 OTU 1 seq
prokMSA_id:13905 AF050587 clone WCHB1-20
2.30.3.2.2.11496 OTU 1 seq
prokMSA_id:13906 AJ012602 unnamed organism
2.30.3.2.2.11490 OTU 1 seq
prokMSA_id:13904 Y11572 Desulfotomaculum ruminis str. DL DSM 2154
2.30.3.2.2.11534 OTU 1 seq
prokMSA_id:13918 AF053933 Desulfotomaculum putei SMCC W463
2.30.3.2.2.11527 OTU 1 seq
prokMSA_id:13912 Y11579 Desulfotomaculum sp. DSM 7440
2.30.3.2.2.11528 OTU 1 seq
prokMSA_id:13913 X98407 Desulfotomaculum aeronauticum str. 9 DSM 10349
2.30.3.2.2.11529 OTU 1 seq
prokMSA_id:13914 U95951 Desulfotomaculum reducens str. MI-1
2.30.3.2.2.11524 OTU 1 seq
prokMSA_id:13911 AB026550 Desulfotomaculum nigrificans
2.30.3.2.2.11732 OTU 1 seq
prokMSA_id:66938 AJ306756 clone SHA-86
2.30.3.2.2.16847 OTU 1 seq
prokMSA_id:47304 AF351222 low G+C Gram-positive clone 36-22 
2.30.3.2.2.19288 OTU 1 seq
prokMSA_id:41028 AF351221 low G+C Gram-positive clone 36-20 
2.30.3.2.2.9494 OTU 1 seq
prokMSA_id:60009 AB091323 Pelotomaculum sp. JT 
2.30.3.2.2.9516 OTU 1 seq
prokMSA_id:60014 AB091325 clone:JI
2.30.3.2.3 HEL.CHLORUM_SUBGROUP 3 seqs
2.30.3.2.3.11554 OTU 1 seq
prokMSA_id:13923 M11212 Heliobacterium chlorum ATCC 35205
2.30.3.2.3.11556 OTU 1 seq
prokMSA_id:13924 AF079102 Heliorestis daurensis str. BT-H1
2.30.3.2.3.9415 OTU 1 seq
prokMSA_id:73860 AF249678 Heliobacterium sulfidophilum complete 
2.30.3.3 CLOSTRIDIUM_STRAIN_DMC 1 seq
2.30.3.3.11564 OTU 1 seq
prokMSA_id:13929 X86690 Clostridium sp. str. DMC
2.30.4 EUBACTERIUM_AND_RELATIVES 614 seqs
2.30.4.1 C.COCCOIDES_GROUP 415 seqs
2.30.4.1.1 C.XYLANOLYTICUM_SUBGROUP 98 seqs
2.30.4.1.1.1002 OTU 1 seq
prokMSA_id:48768 AB034032 rumen 4C0d-19 
2.30.4.1.1.11546 OTU 1 seq
prokMSA_id:51880 AJ400256 clone L10-4
2.30.4.1.1.11621 OTU 1 seq
prokMSA_id:13945 X89971 Butyrivibrio fibrisolvens NCDO 2222
2.30.4.1.1.11610 OTU 1 seq
prokMSA_id:13940 AF001772 clone RFP4
2.30.4.1.1.11645 OTU 1 seq
prokMSA_id:13951 AF084837 TW2 str. TW2
2.30.4.1.1.11599 OTU 1 seq
prokMSA_id:13939 AF001728 clone RCP17
2.30.4.1.1.11626 OTU 1 seq
prokMSA_id:13947 X89973 Butyrivibrio fibrisolvens NCDO 2432
2.30.4.1.1.11682 OTU 1 seq
prokMSA_id:13966 AF001710 clone RC20
2.30.4.1.1.11657 OTU 1 seq
prokMSA_id:13957 X73449 Clostridium sphenoides ATCC 19403
2.30.4.1.1.11672 OTU 1 seq
prokMSA_id:13960 AB009177 clone RFN18
2.30.4.1.1.11684 OTU 1 seq
prokMSA_id:13968 AF001727 clone RCP10
2.30.4.1.1.11683 OTU 1 seq
prokMSA_id:13967 AF001717 clone RC28
2.30.4.1.1.11712 OTU 1 seq
prokMSA_id:13974 AF001724 clone RC39
2.30.4.1.1.11713 OTU 1 seq
prokMSA_id:13976 AB009185 clone RFN27
2.30.4.1.1.11707 OTU 1 seq
prokMSA_id:13971 Y10030 Clostridium sp. str. DR7
2.30.4.1.1.11704 OTU 1 seq
prokMSA_id:13970 AB009229 clone RFN81
2.30.4.1.1.13641 OTU 1 seq
prokMSA_id:44923 AF371578 clone p-619-a5 
2.30.4.1.1.13697 OTU 1 seq
prokMSA_id:37723 AB034052 rumen 3C3d-17 
2.30.4.1.1.13819 OTU 1 seq
prokMSA_id:29965 AJ428552 Clostridium proteoclasticum strain UC 142
2.30.4.1.1.13990 OTU 1 seq
prokMSA_id:23380 AB034009 rumen 3C0d-9 
2.30.4.1.1.14145 OTU 1 seq
prokMSA_id:22771 AF371554 clone p-214-o5 
2.30.4.1.1.14670 OTU 1 seq
prokMSA_id:52933 AF287773 Firmicutes sp. oral clone CK030 
2.30.4.1.1.15069 OTU 1 seq
prokMSA_id:24175 AF371944 clone p-5263-4Wb5 
2.30.4.1.1.15156 OTU 1 seq
prokMSA_id:53640 AF371588 clone p-2592-9F5 
2.30.4.1.1.16067 OTU 1 seq
prokMSA_id:68844 AF371584 clone p-2876-6C5 
2.30.4.1.1.16723 OTU 1 seq
prokMSA_id:70198 AF287770 Firmicutes sp. oral strain FTB41 
2.30.4.1.1.18177 OTU 1 seq
prokMSA_id:25210 AF371565 clone p-2489-18B5 
2.30.4.1.1.19460 OTU 1 seq
prokMSA_id:69988 AF371577 clone p-386-o3 
2.30.4.1.1.20023 OTU 1 seq
prokMSA_id:77867 AB088950 clone:Rs-B88
2.30.4.1.1.20149 OTU 1 seq
prokMSA_id:41158 AB034053 rumen 3C3d-19 
2.30.4.1.1.20469 OTU 1 seq
prokMSA_id:55615 AF481222 Lachnospiraceae oral clone MCE10_236 E5 
2.30.4.1.1.20757 OTU 1 seq
prokMSA_id:17743 AJ295659 Clostridium celerecrescens clone IrT-JG1-12
2.30.4.1.1.21586 OTU 1 seq
prokMSA_id:47954 AF132268 adhufec405 
2.30.4.1.1.21882 OTU 1 seq
prokMSA_id:40768 AF287768 Butyrivibrio sp. oral clone DA074 
2.30.4.1.1.2289 OTU 1 seq
prokMSA_id:33850 AF132269 adhufec406 
2.30.4.1.1.2596 OTU 1 seq
prokMSA_id:50166 AF371583 clone p-389-o3 
2.30.4.1.1.26964 OTU 2 seqs
prokMSA_id:13936 AF001700 clone RC7
prokMSA_id:26280 AB034190 Rumen RC7r-54 
2.30.4.1.1.27716 OTU 2 seqs
prokMSA_id:13965 X76163 Clostridium aerotolerans DSM 5434
prokMSA_id:13973 X71855 Clostridium xylanolyticum ATCC 49623
2.30.4.1.1.28167 OTU 2 seqs
prokMSA_id:42145 AB034043 rumen 5C0d-10 
prokMSA_id:52163 AB034006 rumen 3C0d-6 
2.30.4.1.1.3027 OTU 1 seq
prokMSA_id:19529 AJ315486 isolate HuCC34
2.30.4.1.1.30367 OTU 2 seqs
prokMSA_id:38358 AB034110 rumen 3C28d-6 
prokMSA_id:45716 AB034111 rumen 4C28d-22 
2.30.4.1.1.31468 OTU 2 seqs
prokMSA_id:24781 AJ409005 clone HuCB40
prokMSA_id:49141 AF371568 clone p-355-a3 
2.30.4.1.1.31984 OTU 4 seqs
prokMSA_id:13930 U41172 Butyrivibrio fibrisolvens str. D1
prokMSA_id:13931 X89970 Butyrivibrio fibrisolvens NCDO 2221
prokMSA_id:37898 AF396926 Butyrivibrio fibrisolvens strain C211 
prokMSA_id:46567 AF396927 Butyrivibrio fibrisolvens strain WV1 
2.30.4.1.1.32087 OTU 3 seqs
prokMSA_id:13933 U37378 Clostridium proteoclasticum str. B316 ATCC 51982
prokMSA_id:13934 AF125902 Butyrivibrio fibrisolvens str. H17cSA
prokMSA_id:13949 X89975 Butyrivibrio fibrisolvens NCDO 2435
2.30.4.1.1.32817 OTU 2 seqs
prokMSA_id:13982 AF018560 clone 12-74
prokMSA_id:36565 AB034001 rumen 3C0d-1 
2.30.4.1.1.33294 OTU 2 seqs
prokMSA_id:13985 Y10028 Clostridium sp. str. DR6A
prokMSA_id:13986 AJ002591 Clostridium sp. str. Lip1 DSM 10643
2.30.4.1.1.33556 OTU 9 seqs
prokMSA_id:13958 Y11568 Desulfotomaculum guttoideum str. 50 DSM 4024
prokMSA_id:13961 Y10029 Clostridium sp. str. DR6B
prokMSA_id:13963 AF067965 Clostridium methoxybenzovorans str. SR3 DSM 12182
prokMSA_id:13964 X71848 Clostridium celerecrescens DSM 5628
prokMSA_id:26602 Y18184 Clostridium indolis strain DSM 755
prokMSA_id:39305 AJ404679 ZF1 
prokMSA_id:48944 AJ295660 Clostridium celerecrescens clone IrT-JG1-22
prokMSA_id:70424 AB075772 Clostridium sphenoides 
prokMSA_id:72750 AF479585 Clostridium sp. HAAP-2 
2.30.4.1.1.3544 OTU 1 seq
prokMSA_id:42492 AF371590 clone p-228-o5 
2.30.4.1.1.4003 OTU 1 seq
prokMSA_id:20244 AJ270485 Butyrate-producing A2-175 
2.30.4.1.1.41796 OTU 11 seqs
prokMSA_id:13935 AF001696 clone RC3
prokMSA_id:13937 AF001712 clone RC22
prokMSA_id:13938 AF001726 clone RCP5
prokMSA_id:13944 AB009172 clone RFN13
prokMSA_id:13946 X89972 Butyrivibrio fibrisolvens NCDO 2398
prokMSA_id:13950 X89976 Butyrivibrio fibrisolvens str. Bu 43
prokMSA_id:13952 U77341 Butyrivibrio fibrisolvens str. OB251
prokMSA_id:41384 AJ428553 Butyrivibrio hungatei strain JK 615
prokMSA_id:48290 AF349662 Butyrivibrio fibrisolvens strain OB247 
prokMSA_id:48412 AF349661 Butyrivibrio fibrisolvens strain OB237 
prokMSA_id:74571 AF349663 Butyrivibrio fibrisolvens strain OB249 
2.30.4.1.1.42743 OTU 3 seqs
prokMSA_id:28767 AF371662 clone p-373-a3 
prokMSA_id:33837 AF371661 clone p-59-a5 
prokMSA_id:54048 AF371663 clone p-1676-b3 
2.30.4.1.1.42890 OTU 2 seqs
prokMSA_id:52311 Y18185 Clostridium saccharolyticum strain DSM 2544
prokMSA_id:77702 AB088989 clone:Rs-F92
2.30.4.1.1.4548 OTU 1 seq
prokMSA_id:28175 AB062774 clone:BCf1-20
2.30.4.1.1.4703 OTU 1 seq
prokMSA_id:19729 AB034018 rumen 4C0d-5 
2.30.4.1.1.4790 OTU 1 seq
prokMSA_id:49856 AF385510 sp. oral clone DO016 
2.30.4.1.1.5115 OTU 1 seq
prokMSA_id:50499 AF371579 clone p-4162-6Wa5 
2.30.4.1.1.5609 OTU 1 seq
prokMSA_id:49916 AF371941 clone p-4459-6Wb3 
2.30.4.1.1.5765 OTU 1 seq
prokMSA_id:20439 AF371557 clone p-202-o5 
2.30.4.1.1.7608 OTU 1 seq
prokMSA_id:36330 AF371561 clone p-195-o5 
2.30.4.1.1.839 OTU 1 seq
prokMSA_id:18619 AF371567 clone p-662-a5 
2.30.4.1.1.8496 OTU 1 seq
prokMSA_id:20799 AF371569 clone p-2529-18B5 
2.30.4.1.1.8676 OTU 1 seq
prokMSA_id:28618 AF287772 Firmicutes sp. oral clone BB124 
2.30.4.1.1.9176 OTU 1 seq
prokMSA_id:43700 AB062773 clone:BCf1-16
2.30.4.1.1.9435 OTU 1 seq
prokMSA_id:43789 AB038359 Coprococcus catus 
2.30.4.1.1.9746 OTU 1 seq
prokMSA_id:52289 AF092549 Clostridium algidixylanolyticum 
2.30.4.1.2 RUC.HANSENII_SUBGROUP 54 seqs
2.30.4.1.2.10069 OTU 1 seq
prokMSA_id:36624 AF371555 clone p-188-o5 
2.30.4.1.2.10126 OTU 1 seq
prokMSA_id:36647 AF371576 clone p-247-o5 
2.30.4.1.2.11040 OTU 1 seq
prokMSA_id:28901 AB034056 rumen 4C3d-8 
2.30.4.1.2.11736 OTU 1 seq
prokMSA_id:13988 X71860 cellulosolvens ATCC 43171
2.30.4.1.2.11754 OTU 1 seq
prokMSA_id:13992 AF153853 clone adhufec35.25
2.30.4.1.2.11762 OTU 1 seq
prokMSA_id:13998 AF001692 clone RC25
2.30.4.1.2.11763 OTU 1 seq
prokMSA_id:13999 AF001718 clone RC34
2.30.4.1.2.11761 OTU 1 seq
prokMSA_id:13997 X95624 Ruminococcus hydrogenotrophicus str. S5a33 DSM 10507
2.30.4.1.2.13122 OTU 1 seq
prokMSA_id:29867 AJ408974 clone HuCA22
2.30.4.1.2.13807 OTU 1 seq
prokMSA_id:29937 AB034113 rumen 4C28d-24 
2.30.4.1.2.14406 OTU 1 seq
prokMSA_id:54116 AF371552 clone p-2432-55G5 
2.30.4.1.2.14841 OTU 1 seq
prokMSA_id:22899 AJ133124 Ruminococcus sp. bln9 
2.30.4.1.2.15227 OTU 1 seq
prokMSA_id:22923 AF371547 clone p-2465-18B5 
2.30.4.1.2.15781 OTU 1 seq
prokMSA_id:30895 AB050852 GA36 
2.30.4.1.2.15846 OTU 1 seq
prokMSA_id:16475 AJ408999 clone HuCB25
2.30.4.1.2.16069 OTU 1 seq
prokMSA_id:68845 AF371540 clone p-2502-18B5 
2.30.4.1.2.16312 OTU 1 seq
prokMSA_id:30968 AB034055 rumen 6C3d-13 
2.30.4.1.2.16350 OTU 1 seq
prokMSA_id:77371 AF349421 A29 
2.30.4.1.2.17049 OTU 1 seq
prokMSA_id:77466 AF349420 A22 
2.30.4.1.2.17481 OTU 1 seq
prokMSA_id:31735 AF371548 clone p-192-o5 
2.30.4.1.2.17627 OTU 1 seq
prokMSA_id:48088 AF371553 clone p-3663-18B3 
2.30.4.1.2.19271 OTU 1 seq
prokMSA_id:77785 AB088972 clone:Rs-H32
2.30.4.1.2.19386 OTU 1 seq
prokMSA_id:69958 AJ408971 clone HuCA19
2.30.4.1.2.19698 OTU 1 seq
prokMSA_id:25469 AF132270 adhufec40 
2.30.4.1.2.21098 OTU 1 seq
prokMSA_id:40639 AF371560 clone p-2399-55G5 
2.30.4.1.2.2710 OTU 1 seq
prokMSA_id:72420 AF132274 adhufec52 
2.30.4.1.2.28244 OTU 2 seqs
prokMSA_id:13995 X94965 Ruminococcus schinkii str. B DSM 10518
prokMSA_id:13996 X94964 Ruminococcus sp. str. Bie 41
2.30.4.1.2.2918 OTU 1 seq
prokMSA_id:33906 AJ408977 clone HuCA26
2.30.4.1.2.31404 OTU 3 seqs
prokMSA_id:14000 X94966 Ruminococcus productus ATCC 27340
prokMSA_id:14001 Y10584 Clostridium sp. str. formate
prokMSA_id:14007 L76595 Ruminococcus productus ATCC 27340
2.30.4.1.2.33594 OTU 6 seqs
prokMSA_id:13989 X85101 Ruminococcus obeum
prokMSA_id:13993 L76601 Ruminococcus obeum ATCC 29174
prokMSA_id:38418 AF371544 clone p-60-a5 
prokMSA_id:40507 AF371543 clone p-1977-s962-5 
prokMSA_id:73388 AF357567 mpn-isolate group 19 
prokMSA_id:81645 AY169411 Ruminococcus obeum clone 1-4 
2.30.4.1.2.3644 OTU 1 seq
prokMSA_id:41867 AF202264 Syntrophococcus sucromutans 
2.30.4.1.2.3699 OTU 1 seq
prokMSA_id:71965 AF371545 clone p-2624-9F5 
2.30.4.1.2.40555 OTU 7 seqs
prokMSA_id:35844 AF357566 mpn-isolate group 18 
prokMSA_id:40035 AF132243 adhufec171 
prokMSA_id:40308 AJ408958 clone HuCA2
prokMSA_id:52321 AF371541 clone p-2482-18B5 
prokMSA_id:71830 AF052417 A20 complete 
prokMSA_id:77537 AF349417 A17 
prokMSA_id:81272 AY169419 Ruminococcus obeum clone 1-33 
2.30.4.1.2.41703 OTU 2 seqs
prokMSA_id:18687 AF371542 clone p-2000-s959-5 
prokMSA_id:43588 AJ408993 clone HuCB12
2.30.4.1.2.4831 OTU 1 seq
prokMSA_id:81152 AY169424 Ruminococcus obeum clone 1-56 
2.30.4.1.2.5240 OTU 1 seq
prokMSA_id:28218 AJ408961 clone HuCA5
2.30.4.1.2.8001 OTU 1 seq
prokMSA_id:52043 AB034114 rumen 3C28d-5 
2.30.4.1.2.8815 OTU 1 seq
prokMSA_id:52106 AF287775 Firmicutes sp. oral clone CH017 
2.30.4.1.2.9779 OTU 1 seq
prokMSA_id:51634 AF371546 clone p-2746-24E5 
2.30.4.1.3 EUB.SABURREUM_SUBGROUP 9 seqs
2.30.4.1.3.11041 OTU 1 seq
prokMSA_id:29564 AF132264 adhufec363 
2.30.4.1.3.12182 OTU 1 seq
prokMSA_id:21881 AF371573 clone p-1616-c5 
2.30.4.1.3.12669 OTU 1 seq
prokMSA_id:22599 AF385557 sp. oral clone BR088 
2.30.4.1.3.1304 OTU 1 seq
prokMSA_id:71649 AF385562 sp. oral clone BS091 
2.30.4.1.3.19420 OTU 1 seq
prokMSA_id:71165 AF385567 sp. oral clone BU061 
2.30.4.1.3.33193 OTU 3 seqs
prokMSA_id:71550 AF385552 sp. oral clone BE088 
prokMSA_id:72977 AF287777 cf. saburreum oral strain C27KA 
prokMSA_id:73044 AF201981 Human oral C73 
2.30.4.1.3.7206 OTU 1 seq
prokMSA_id:14010 X87152 Johnsonella ignava ATCC 51276
2.30.4.1.4 RUC.GNAVUS_SUBGROUP 93 seqs
2.30.4.1.4.10042 OTU 1 seq
prokMSA_id:36611 AF371558 clone p-3022-SwA5 
2.30.4.1.4.10763 OTU 1 seq
prokMSA_id:44560 AF371618 clone p-196-o5 
2.30.4.1.4.11284 OTU 1 seq
prokMSA_id:22371 AF371633 clone p-2186-s959-3 
2.30.4.1.4.11628 OTU 1 seq
prokMSA_id:74779 AB023973 Clostridium hylemonae strain:TN-272
2.30.4.1.4.11918 OTU 1 seq
prokMSA_id:45306 AJ400261 clone L11-5
2.30.4.1.4.12422 OTU 1 seq
prokMSA_id:30334 AJ272036 Parasporobacterium paucivorans strain SYR1
2.30.4.1.4.12746 OTU 1 seq
prokMSA_id:68346 AF481218 Lachnospiraceae oral clone MCE7_60 E1 
2.30.4.1.4.12735 OTU 1 seq
prokMSA_id:68343 AF481221 Lachnospiraceae oral clone MCE9_173 E4 
2.30.4.1.4.12953 OTU 1 seq
prokMSA_id:44883 AF371594 clone p-2486-18B5 
2.30.4.1.4.13243 OTU 1 seq
prokMSA_id:46103 AJ408975 clone HuCA23
2.30.4.1.4.13668 OTU 1 seq
prokMSA_id:38374 AF132267 adhufec382 
2.30.4.1.4.1384 OTU 1 seq
prokMSA_id:71692 AF357570 mpn-isolate group 22 
2.30.4.1.4.14127 OTU 1 seq
prokMSA_id:38415 AJ400271 clone L10-9
2.30.4.1.4.14137 OTU 1 seq
prokMSA_id:39079 AJ132842 sp. III-35 
2.30.4.1.4.14432 OTU 1 seq
prokMSA_id:30622 AF371634 clone p-1817-c3 
2.30.4.1.4.1588 OTU 1 seq
prokMSA_id:25934 AF132278 adhufec68 
2.30.4.1.4.15878 OTU 1 seq
prokMSA_id:39350 AF371571 clone p-2168-959-3 
2.30.4.1.4.16511 OTU 1 seq
prokMSA_id:38812 AJ400260 clone L10-8
2.30.4.1.4.17334 OTU 1 seq
prokMSA_id:70254 AF371639 clone p-50-a5 
2.30.4.1.4.17504 OTU 1 seq
prokMSA_id:24522 AF371668 clone p-3487-9F3 
2.30.4.1.4.17580 OTU 1 seq
prokMSA_id:24546 AF262239 Clostridium leptum 
2.30.4.1.4.18225 OTU 1 seq
prokMSA_id:78204 AB088993 clone:Rs-D48
2.30.4.1.4.18237 OTU 1 seq
prokMSA_id:48120 AF371614 clone p-2184-s959-3 
2.30.4.1.4.18534 OTU 1 seq
prokMSA_id:17494 AF126687 Clostridium fimetarium 
2.30.4.1.4.19142 OTU 1 seq
prokMSA_id:77728 AB089125 candidate division OP11 clone:Rs-J47
2.30.4.1.4.2026 OTU 1 seq
prokMSA_id:34413 AF371635 clone p-2182-959-3 
2.30.4.1.4.20393 OTU 1 seq
prokMSA_id:32727 AF371667 clone p-1612-c5 
2.30.4.1.4.20491 OTU 1 seq
prokMSA_id:25534 AF371626 clone p-2035-s959-5 
2.30.4.1.4.20983 OTU 1 seq
prokMSA_id:34020 AF371574 clone p-2044-s959-5 
2.30.4.1.4.21108 OTU 1 seq
prokMSA_id:71387 AF385508 sp. oral clone DO008 
2.30.4.1.4.21130 OTU 1 seq
prokMSA_id:71397 AF287771 Firmicutes sp. oral clone AO068 
2.30.4.1.4.2117 OTU 1 seq
prokMSA_id:34466 AF287774 Firmicutes sp. oral clone CK051 
2.30.4.1.4.21696 OTU 1 seq
prokMSA_id:71434 AF357572 mpn-isolate group 24 
2.30.4.1.4.2452 OTU 1 seq
prokMSA_id:50105 AF371616 clone p-2195-s959-3 
2.30.4.1.4.25698 OTU 2 seqs
prokMSA_id:43305 AB034116 rumen 4C28d-13 
prokMSA_id:51916 AB034115 rumen 4C28d-17 
2.30.4.1.4.27466 OTU 4 seqs
prokMSA_id:35683 AF298662 Lachnobacterium bovis strain LRC 5357 
prokMSA_id:36354 AF298665 Lachnobacterium bovis strain LRC 5436 
prokMSA_id:37865 AF298663 Lachnobacterium bovis strain LRC 5382 
prokMSA_id:52262 AF298664 Lachnobacterium bovis strain LRC 5405 
2.30.4.1.4.2787 OTU 1 seq
prokMSA_id:35150 AB023972 Clostridium hylemonae strain:TN-271
2.30.4.1.4.30162 OTU 2 seqs
prokMSA_id:14012 L76604 Ruminococcus torques ATCC 27756
prokMSA_id:38313 AJ408992 clone HuCB10
2.30.4.1.4.30739 OTU 2 seqs
prokMSA_id:39012 AJ409004 clone HuCB37
prokMSA_id:70219 AJ270474 Butyrate-producing L1-83 
2.30.4.1.4.30754 OTU 2 seqs
prokMSA_id:22721 AF371580 clone p-265-o5 
prokMSA_id:47477 AF371581 clone p-217-o5 
2.30.4.1.4.31429 OTU 2 seqs
prokMSA_id:14019 AF001715 clone RC26
prokMSA_id:14020 AF001721 clone RC35
2.30.4.1.4.31422 OTU 2 seqs
prokMSA_id:16757 AJ400255 clone L10-3
prokMSA_id:18180 AJ308396 C13-5 
2.30.4.1.4.31590 OTU 2 seqs
prokMSA_id:33341 AF371595 clone p-596-a5 
prokMSA_id:38044 AJ408996 clone HuCB21
2.30.4.1.4.34163 OTU 9 seqs
prokMSA_id:19457 AB020806 Clostridium scindens strain:JCM 10423 36S
prokMSA_id:20145 Y18186 Clostridium scindens strain DSM 5676
prokMSA_id:33482 AB020727 Clostridium scindens strain:JCM 10418
prokMSA_id:37201 AB020730 Clostridium scindens strain:JCM 10421 I-10
prokMSA_id:39133 AB020729 Clostridium scindens strain:JCM 10420 M-18
prokMSA_id:45711 AB020883 Clostridium scindens strain:JCM 6567
prokMSA_id:48553 AB020728 Clostridium scindens strain:JCM 10419 Y-1113
prokMSA_id:50457 AF262238 Clostridium scindens 
prokMSA_id:54563 AF262236 sp. VPI 12708 
2.30.4.1.4.34426 OTU 4 seqs
prokMSA_id:14025 AF052421 clone A54
prokMSA_id:26562 AF132245 adhufec217 
prokMSA_id:43617 AJ408969 clone HuCA17
prokMSA_id:81160 AY169422 Clostridium clostridioforme 
2.30.4.1.4.34579 OTU 2 seqs
prokMSA_id:14032 L76597 Ruminococcus gnavus ATCC 29149
prokMSA_id:14034 X94967 Ruminococcus gnavus ATCC 29149
2.30.4.1.4.3643 OTU 1 seq
prokMSA_id:34649 AF371559 clone p-3075-SwA5 
2.30.4.1.4.3787 OTU 1 seq
prokMSA_id:27488 AF371597 clone p-1561-b5 
2.30.4.1.4.3972 OTU 1 seq
prokMSA_id:81063 AY169415 Clostridium nexile 
2.30.4.1.4.4137 OTU 1 seq
prokMSA_id:43159 AF371599 clone p-1512-b5 
2.30.4.1.4.42667 OTU 2 seqs
prokMSA_id:23277 AF396924 sp. C124b 
prokMSA_id:24050 AF396923 sp. C12b 
2.30.4.1.4.5454 OTU 1 seq
prokMSA_id:34847 AF371585 clone p-242-o5 
2.30.4.1.4.5706 OTU 1 seq
prokMSA_id:19873 AF371570 clone p-416-o3 
2.30.4.1.4.638 OTU 1 seq
prokMSA_id:27071 AF371598 clone p-3568-9F3 
2.30.4.1.4.6819 OTU 1 seq
prokMSA_id:29024 AB050853 GA21 
2.30.4.1.4.7209 OTU 1 seq
prokMSA_id:14013 AB009173 clone RFN14
2.30.4.1.4.7211 OTU 1 seq
prokMSA_id:14015 AF153858 clone adhufec80.25
2.30.4.1.4.7214 OTU 1 seq
prokMSA_id:14016 M59109 Clostridium oroticum ATCC 13619
2.30.4.1.4.7216 OTU 1 seq
prokMSA_id:14018 AF125207 clone X112
2.30.4.1.4.7242 OTU 1 seq
prokMSA_id:14021 AF116854 Sporobacterium olearius str. SR1 DSM 12504
2.30.4.1.4.7243 OTU 1 seq
prokMSA_id:14023 AF052412 clone A11
2.30.4.1.4.7249 OTU 1 seq
prokMSA_id:14026 AB009204 clone RFN48
2.30.4.1.4.7251 OTU 1 seq
prokMSA_id:14027 AB009213 clone RFN66
2.30.4.1.4.7268 OTU 1 seq
prokMSA_id:14036 X73443 Clostridium nexile DSM 1787
2.30.4.1.4.769 OTU 1 seq
prokMSA_id:33681 AF371604 clone p-2581-9F5 
2.30.4.1.4.8440 OTU 1 seq
prokMSA_id:29205 AF371582 clone p-57-a5 
2.30.4.1.4.866 OTU 1 seq
prokMSA_id:25842 AF371666 clone p-204-o5 
2.30.4.1.4.8994 OTU 1 seq
prokMSA_id:44311 AB034054 rumen 3C3d-15 
2.30.4.1.4.9639 OTU 1 seq
prokMSA_id:22158 AF371632 clone p-1608-c5 
2.30.4.1.4.9898 OTU 1 seq
prokMSA_id:51677 AJ308386 clone L10-21
2.30.4.1.5 BTV.FIBRISOLVENS_SUBGROUP 72 seqs
2.30.4.1.5.11059 OTU 1 seq
prokMSA_id:28914 AF371611 clone p-2418-55G5 
2.30.4.1.5.11449 OTU 1 seq
prokMSA_id:45296 AF371602 clone p-61-a5 
2.30.4.1.5.14875 OTU 1 seq
prokMSA_id:38558 AF202258 oxidoreducens strain DAS110 
2.30.4.1.5.15202 OTU 1 seq
prokMSA_id:16353 AF371624 clone p-1925-962-3 
2.30.4.1.5.15164 OTU 1 seq
prokMSA_id:16340 AF371601 clone p-43-a5 
2.30.4.1.5.16708 OTU 1 seq
prokMSA_id:25005 AF371617 clone p-1276-a5 
2.30.4.1.5.16815 OTU 1 seq
prokMSA_id:17208 AF132238 adhufec150 
2.30.4.1.5.16991 OTU 1 seq
prokMSA_id:23832 AB034061 rumen 5C3d-20 
2.30.4.1.5.179 OTU 1 seq
prokMSA_id:17906 AB034060 rumen 5C3d-5 
2.30.4.1.5.1846 OTU 1 seq
prokMSA_id:72301 AB034063 rumen 3C3d-8 
2.30.4.1.5.18931 OTU 1 seq
prokMSA_id:32556 AJ270477 Butyrate-producing L2-21 
2.30.4.1.5.19266 OTU 1 seq
prokMSA_id:69909 AJ011522 ramulus 
2.30.4.1.5.2091 OTU 1 seq
prokMSA_id:41673 AF371605 clone p-2176-s959-3 
2.30.4.1.5.20886 OTU 1 seq
prokMSA_id:41204 AF371620 clone p-2354-55G5 
2.30.4.1.5.2722 OTU 1 seq
prokMSA_id:72430 AJ270480 Butyrate-producing L1-81 
2.30.4.1.5.2756 OTU 1 seq
prokMSA_id:42360 AF371627 clone p-2205-s959-3 
2.30.4.1.5.28350 OTU 2 seqs
prokMSA_id:21459 AF371621 clone p-952-s962-5 
prokMSA_id:31083 AF371622 clone p-907-s962-5 
2.30.4.1.5.29777 OTU 3 seqs
prokMSA_id:23274 AB034119 rumen 2C28d-6 
prokMSA_id:34495 AB034117 rumen 2C28d-1 
prokMSA_id:54674 AB034120 rumen 2C28d-5 
2.30.4.1.5.3211 OTU 1 seq
prokMSA_id:73120 AF481219 Lachnospiraceae oral clone MCE9_104 E2 
2.30.4.1.5.33332 OTU 3 seqs
prokMSA_id:36445 AJ408994 clone HuCB14
prokMSA_id:70078 AF132286 adhufec8 
prokMSA_id:81674 AY169428 rectale 
2.30.4.1.5.36722 OTU 29 seqs
prokMSA_id:14040 U41167 Butyrivibrio fibrisolvens str. 49
prokMSA_id:14042 AF001704 clone RC13
prokMSA_id:14044 X89977 Butyrivibrio fibrisolvens NCDO 2223
prokMSA_id:14045 U77339 Butyrivibrio fibrisolvens str. H10b
prokMSA_id:14046 X95893 Pseudobutyrivibrio ruminis str. A12-1 DSM 9787
prokMSA_id:14049 AF105403 Butyrivibrio fibrisolvens str. LP1265
prokMSA_id:14050 X89978 Butyrivibrio fibrisolvens NCDO 2249
prokMSA_id:14051 AF125217 Butyrivibrio fibrisolvens str. B835
prokMSA_id:14052 AB003392 Butyrivibrio sp. str. sp45
prokMSA_id:14053 AB003393 Butyrivibrio sp. str. sp42
prokMSA_id:14054 U77337 Butyrivibrio fibrisolvens str. AR27
prokMSA_id:14055 U77340 Butyrivibrio fibrisolvens str. OB236
prokMSA_id:14057 U77343 Butyrivibrio fibrisolvens str. OR79
prokMSA_id:14058 U41169 Butyrivibrio fibrisolvens str. OB189
prokMSA_id:14059 U41168 Butyrivibrio fibrisolvens str. OB156
prokMSA_id:14061 X89980 Butyrivibrio fibrisolvens str. Bu 21 NCDO 2399
prokMSA_id:14062 AB009190 clone RFN34
prokMSA_id:14063 X89979 Butyrivibrio fibrisolvens NCDO 2397
prokMSA_id:14065 U77338 Butyrivibrio fibrisolvens str. CF3
prokMSA_id:14066 U41171 Butyrivibrio fibrisolvens str. OB192
prokMSA_id:14067 U41170 Butyrivibrio fibrisolvens str. OB157
prokMSA_id:19835 AF202260 Pseudobutyrivibrio ruminis strain pC-XS2 
prokMSA_id:23954 AB034066 rumen 4C3d-11 
prokMSA_id:36852 AF264034 Butyrivibrio cf. fibrisolvens EAT6 
prokMSA_id:42103 AB034067 rumen 4C3d-7 
prokMSA_id:42110 AJ270493 Butyrivibrio fibrisolvens strain 1.230
prokMSA_id:52841 AF349660 Butyrivibrio fibrisolvens strain OB146 
prokMSA_id:70650 AY029616 Butyrivibrio fibrisolvens 
prokMSA_id:74850 AF202261 Pseudobutyrivibrio ruminis strain pC-XS6 
2.30.4.1.5.39257 OTU 3 seqs
prokMSA_id:18666 AJ428549 Pseudobutyrivibrio ruminis strain JK 626
prokMSA_id:21769 AJ428550 Pseudobutyrivibrio xylanovorans strain JK 23/2
prokMSA_id:36497 AJ428548 Pseudobutyrivibrio xylanovorans strain Mz 5
2.30.4.1.5.41175 OTU 2 seqs
prokMSA_id:20827 AJ270478 Butyrate-producing L1-93 
prokMSA_id:70039 AJ312385 Roseburia intestinalis strain L1-82
2.30.4.1.5.42476 OTU 3 seqs
prokMSA_id:32710 AJ270482 Butyrate-producing A2-183 
prokMSA_id:42286 AF132248 adhufec225 
prokMSA_id:73965 AF371615 clone p-616-a5 
2.30.4.1.5.4319 OTU 1 seq
prokMSA_id:72630 AF287776 saburreum-like sp. oral clone CK004 
2.30.4.1.5.4788 OTU 1 seq
prokMSA_id:49854 AF371629 clone p-3848-23G3 
2.30.4.1.5.4789 OTU 1 seq
prokMSA_id:81139 AY169412 Butyrivibrio fibrisolvens 
2.30.4.1.5.5538 OTU 1 seq
prokMSA_id:34889 AB034121 rumen 2C28d-4 
2.30.4.1.5.7283 OTU 1 seq
prokMSA_id:14041 AF001695 clone RC32
2.30.4.1.5.7286 OTU 1 seq
prokMSA_id:14043 AF001754 clone RF22
2.30.4.1.5.7297 OTU 1 seq
prokMSA_id:14047 AF001716 clone RC27
2.30.4.1.5.7300 OTU 1 seq
prokMSA_id:14048 AB004910 Butyrivibrio fibrisolvens str. T63
2.30.4.1.5.7321 OTU 1 seq
prokMSA_id:14056 U77342 Butyrivibrio fibrisolvens str. OR35
2.30.4.1.5.7636 OTU 1 seq
prokMSA_id:73645 AF385507 sp. oral clone DN050 
2.30.4.1.6 EUB.VENTRIOSUM_SUBGROUP 20 seqs
2.30.4.1.6.13785 OTU 1 seq
prokMSA_id:29903 AF371586 clone p-190-o5 
2.30.4.1.6.15847 OTU 1 seq
prokMSA_id:16477 AF202259 oxidoreducens strain G2-2 
2.30.4.1.6.17002 OTU 1 seq
prokMSA_id:77449 AF349416 A13 
2.30.4.1.6.20330 OTU 1 seq
prokMSA_id:33369 AJ270488 Butyrate-producing L2-12 
2.30.4.1.6.20545 OTU 1 seq
prokMSA_id:49088 AF132250 adhufec236 
2.30.4.1.6.2225 OTU 1 seq
prokMSA_id:33833 AF371673 clone p-1321-a5 
2.30.4.1.6.26883 OTU 2 seqs
prokMSA_id:50000 AF132252 adhufec24 
prokMSA_id:74755 AF530292 clone cadhufec001h7 
2.30.4.1.6.2860 OTU 1 seq
prokMSA_id:72481 AJ408972 clone HuCA20
2.30.4.1.6.3109 OTU 1 seq
prokMSA_id:50208 AF371669 clone p-2169-s959-3 
2.30.4.1.6.32552 OTU 4 seqs
prokMSA_id:16944 AJ270487 Butyrate-producing L1-92 
prokMSA_id:31621 AF149884 08.96.4 complete 
prokMSA_id:48557 AF275915 AA04 
prokMSA_id:74649 AF332714 clone UASB_brew_B16 
2.30.4.1.6.3936 OTU 1 seq
prokMSA_id:81051 AB100463 clone: Rs-L15
2.30.4.1.6.4232 OTU 1 seq
prokMSA_id:72606 AF275914 AA02 
2.30.4.1.6.6997 OTU 1 seq
prokMSA_id:29079 AF371638 clone p-1894-s962-3 
2.30.4.1.6.7367 OTU 1 seq
prokMSA_id:14069 AF028351 Clostridium indolis str. CM971
2.30.4.1.6.7555 OTU 1 seq
prokMSA_id:73626 AF132254 adhufec25 
2.30.4.1.6.8174 OTU 1 seq
prokMSA_id:37010 AB034046 rumen 5C0d-13 
2.30.4.1.7 LCN.MULTIPARA_SUBGROUP 11 seqs
2.30.4.1.7.16063 OTU 1 seq
prokMSA_id:68841 AF371648 clone p-1594-c5 
2.30.4.1.7.16442 OTU 1 seq
prokMSA_id:46667 AF371643 clone p-268-o5 
2.30.4.1.7.17717 OTU 1 seq
prokMSA_id:47452 AF371664 clone p-17-a5 
2.30.4.1.7.32744 OTU 2 seqs
prokMSA_id:26597 AF371646 clone p-1750-b3 
prokMSA_id:33320 AF371645 clone p-1692-b3 
2.30.4.1.7.33355 OTU 2 seqs
prokMSA_id:42680 AF371641 clone p-327-a3 
prokMSA_id:72033 AF371642 clone p-189-o5 
2.30.4.1.7.4791 OTU 1 seq
prokMSA_id:51050 AF132285 adhufec85 
2.30.4.1.7.5811 OTU 1 seq
prokMSA_id:50530 AF371649 clone p-2016-s959-5 
2.30.4.1.7.7398 OTU 1 seq
prokMSA_id:14073 X67097 "pectinii" str. P-1 DSM 6788
2.30.4.1.7.9034 OTU 1 seq
prokMSA_id:82283 AY169414 Lachnospira pectinoschiza 
2.30.4.1.8 C.POLYSACCHAROLYTICUM_SUBGROUP 35 seqs
2.30.4.1.8.10358 OTU 1 seq
prokMSA_id:28879 AJ408968 clone HuCA15
2.30.4.1.8.11099 OTU 1 seq
prokMSA_id:29597 AF052409 A07 complete 
2.30.4.1.8.12900 OTU 1 seq
prokMSA_id:37633 AF371656 clone p-2025-s959-5 
2.30.4.1.8.1511 OTU 1 seq
prokMSA_id:25904 AF371659 clone p-197-o5 
2.30.4.1.8.16062 OTU 1 seq
prokMSA_id:68840 AF371653 clone p-339-a3 
2.30.4.1.8.16269 OTU 1 seq
prokMSA_id:16512 AF371660 clone p-2566-9F5 
2.30.4.1.8.17257 OTU 1 seq
prokMSA_id:40124 AJ270491 Butyrate-producing L2-50 
2.30.4.1.8.1736 OTU 1 seq
prokMSA_id:25995 AB034025 rumen 4C0d-12 
2.30.4.1.8.18172 OTU 1 seq
prokMSA_id:62513 AF527773 MDA2477 
2.30.4.1.8.20909 OTU 1 seq
prokMSA_id:41212 AF132257 adhufec295 
2.30.4.1.8.21538 OTU 1 seq
prokMSA_id:48583 AF385556 Catonella sp. oral clone BR063 
2.30.4.1.8.2160 OTU 1 seq
prokMSA_id:71783 AF376231 ckncm327-B6-72 
2.30.4.1.8.21708 OTU 1 seq
prokMSA_id:34139 AF371678 clone p-1573-b5 
2.30.4.1.8.25617 OTU 2 seqs
prokMSA_id:14093 AF157054 plexicaudatum str. ASF 492
prokMSA_id:14094 AF157058 plexicaudatum ATCC 27514
2.30.4.1.8.25691 OTU 2 seqs
prokMSA_id:14096 X87151 Catonella morbi ATCC 51271
prokMSA_id:40708 AF385577 Catonella sp. oral clone EZ006 
2.30.4.1.8.32506 OTU 3 seqs
prokMSA_id:14082 AF001711 clone RC21
prokMSA_id:23219 AB034069 rumen 5C3d-11 
prokMSA_id:32471 AB034068 rumen 3C3d-14 
2.30.4.1.8.32719 OTU 2 seqs
prokMSA_id:14085 AF052416 clone A19
prokMSA_id:35020 AF132241 adhufec157 
2.30.4.1.8.42261 OTU 2 seqs
prokMSA_id:34731 AF371650 clone p-1895-s962-3 
prokMSA_id:49521 AF371652 clone p-6-a5 
2.30.4.1.8.42665 OTU 2 seqs
prokMSA_id:17859 AJ315482 isolate HuCC15
prokMSA_id:70163 AJ270490 Butyrate-producing L2-7 
2.30.4.1.8.5423 OTU 1 seq
prokMSA_id:27613 AJ409000 clone HuCB26
2.30.4.1.8.5733 OTU 1 seq
prokMSA_id:20421 AF371657 clone p-444-o3 
2.30.4.1.8.7382 OTU 1 seq
prokMSA_id:50719 AF132276 adhufec57 
2.30.4.1.8.7405 OTU 1 seq
prokMSA_id:14079 AF001738 clone RF5
2.30.4.1.8.7431 OTU 1 seq
prokMSA_id:14080 AF001756 clone RF24
2.30.4.1.8.7443 OTU 1 seq
prokMSA_id:14083 AF001722 clone RC36
2.30.4.1.8.7451 OTU 1 seq
prokMSA_id:14086 D14148 Coprococcus eutactus ATCC 27759
2.30.4.1.8.7452 OTU 1 seq
prokMSA_id:14089 X71858 Clostridium polysaccharolyticum ATCC 33142
2.30.4.1.8.9471 OTU 1 seq
prokMSA_id:73894 AF287769 Catonella sp. oral clone AH153 
2.30.4.1.9 C.AMINOVALERICUM_SUBGROUP 15 seqs
2.30.4.1.9.10762 OTU 1 seq
prokMSA_id:21698 AF371676 clone p-273-o5 
2.30.4.1.9.11797 OTU 1 seq
prokMSA_id:36892 AF371677 clone p-2409-55G5 
2.30.4.1.9.15738 OTU 1 seq
prokMSA_id:23653 AJ229214 from anoxic bulk soil clone BSV70
2.30.4.1.9.17876 OTU 1 seq
prokMSA_id:16766 AF371670 clone p-1807-c3 
2.30.4.1.9.1792 OTU 1 seq
prokMSA_id:48887 AJ229210 from anoxic bulk soil clone BSV61
2.30.4.1.9.18763 OTU 1 seq
prokMSA_id:71089 AF371665 clone p-30-a5 
2.30.4.1.9.20188 OTU 1 seq
prokMSA_id:41178 AF371674 clone p-211-o5 
2.30.4.1.9.7090 OTU 1 seq
prokMSA_id:28479 AB078860 Clostridiaceae str. 80Wc 
2.30.4.1.9.7497 OTU 1 seq
prokMSA_id:14099 X71853 Clostridium populeti ATCC 35295
2.30.4.1.9.7538 OTU 1 seq
prokMSA_id:50757 AF371671 clone p-3181-SwA3 
2.30.4.1.9.8038 OTU 1 seq
prokMSA_id:14105 X73436 Clostridium aminovalericum DSM 1283
2.30.4.1.9.8036 OTU 1 seq
prokMSA_id:14101 AJ229234 Clostridium XB90 str. XB90
2.30.4.1.9.8037 OTU 1 seq
prokMSA_id:14103 AF116920 str. HESP1 DSM 12503
2.30.4.1.9.9463 OTU 1 seq
prokMSA_id:28702 AF371672 clone p-322-a3 
2.30.4.1.9.9924 OTU 1 seq
prokMSA_id:20939 AJ409006 clone HuCB56
2.30.4.1.99 VARIOUS 8 seqs
2.30.4.1.99.35427 OTU 3 seqs
prokMSA_id:16544 AF371591 clone p-44-a5 
prokMSA_id:46947 AF371592 clone p-2561-9F5 
prokMSA_id:77458 AF349427 A47 
2.30.4.1.99.41619 OTU 5 seqs
prokMSA_id:21408 AB034123 rumen 4C28d-8 
prokMSA_id:26201 AF371610 clone p-969-s962-5 
prokMSA_id:29758 AJ408967 clone HuCA13
prokMSA_id:31554 AJ408979 clone HuCA28
prokMSA_id:48918 AF371609 clone p-334-a3 
2.30.4.2 C.PROPIONICUM_GROUP 21 seqs
2.30.4.2.1 C.PROPIONICUM_SUBGROUP 14 seqs
2.30.4.2.1.11549 OTU 1 seq
prokMSA_id:44669 AF349756 DCE25 
2.30.4.2.1.15371 OTU 1 seq
prokMSA_id:46494 AB062805 clone:BCf10-10
2.30.4.2.1.16203 OTU 1 seq
prokMSA_id:31573 AF371680 clone p-4496-6Wb3 
2.30.4.2.1.17855 OTU 1 seq
prokMSA_id:77584 AB088994 clone:Rs-G77
2.30.4.2.1.18212 OTU 1 seq
prokMSA_id:32467 AF371679 clone p-4247-4Wa3 
2.30.4.2.1.18405 OTU 1 seq
prokMSA_id:78278 AB088996 clone:Rs-Q35
2.30.4.2.1.19139 OTU 1 seq
prokMSA_id:78382 AB088957 clone:Rs-K95
2.30.4.2.1.20018 OTU 1 seq
prokMSA_id:77862 AB089002 clone:Rs-B14
2.30.4.2.1.4139 OTU 1 seq
prokMSA_id:50377 AF427938 clone 6A 
2.30.4.2.1.7272 OTU 1 seq
prokMSA_id:82089 AY217423 MTCE-T2 4C 
2.30.4.2.1.8040 OTU 1 seq
prokMSA_id:14108 AF157052 Clostridium ASF356 str. ASF 356
2.30.4.2.1.8041 OTU 1 seq
prokMSA_id:14109 X76746 Clostridium neopropionicum DSM 3847
2.30.4.2.1.9117 OTU 1 seq
prokMSA_id:37128 AB062772 clone:BCf1-11
2.30.4.2.1.97 OTU 1 seq
prokMSA_id:49274 AY033434 Clostridium lactatifermentans 
2.30.4.2.2 C.COLINUM_SUBGROUP 7 seqs
2.30.4.2.2.11295 OTU 1 seq
prokMSA_id:51807 AB031328 Clostridium sp. NT-2 
2.30.4.2.2.17545 OTU 1 seq
prokMSA_id:78144 AB088974 clone:Rs-K41
2.30.4.2.2.20729 OTU 1 seq
prokMSA_id:77909 AB088949 clone:Rs-D68
2.30.4.2.2.32677 OTU 2 seqs
prokMSA_id:14111 D14639 str. RT
prokMSA_id:14113 D14638 str. RJ
2.30.4.2.2.5069 OTU 1 seq
prokMSA_id:42607 AB031327 Clostridium sp. NT-1 
2.30.4.2.2.8058 OTU 1 seq
prokMSA_id:14114 X76748 Clostridium colinum DSM 6011
2.30.4.3 C.LENTOCELLUM_GROUP 14 seqs
2.30.4.3.15910 OTU 1 seq
prokMSA_id:39361 AF371938 clone p-5278-2Wa3 
2.30.4.3.1684 OTU 1 seq
prokMSA_id:80119 AY193173 candidate division SR1 clone SRB2 
2.30.4.3.32707 OTU 2 seqs
prokMSA_id:14120 M99572 Epulopiscium sp. str. morphotype A1
prokMSA_id:14121 AF067413 Epulopiscium fishelsoni str. Red Sea A1
2.30.4.3.41287 OTU 2 seqs
prokMSA_id:79946 AY193171 candidate division SR1 clone SRB67 
prokMSA_id:80797 AY193169 candidate division SR1 clone SRB44 
2.30.4.3.4906 OTU 1 seq
prokMSA_id:50432 AB054173 gram-positive HOC39 
2.30.4.3.8086 OTU 1 seq
prokMSA_id:14123 AB015542 str. BD2-14
2.30.4.3.8088 OTU 1 seq
prokMSA_id:14125 AF087643 str. PS7
2.30.4.3.8093 OTU 1 seq
prokMSA_id:14127 U22332 Metabacterium polyspora
2.30.4.3.8090 OTU 1 seq
prokMSA_id:14126 U22331 Metabacterium polyspora
2.30.4.3.8095 OTU 1 seq
prokMSA_id:14128 B. M99574 Epulopiscium sp. str. morphotype
2.30.4.3.8097 OTU 1 seq
prokMSA_id:14129 M99573 Epulopiscium sp. str. morphotype A2
2.30.4.3.8125 OTU 1 seq
prokMSA_id:14130 AF067414 Epulopiscium fishelsoni str. Red Sea A2
2.30.4.4 EUBACTERIUM_GROUP 75 seqs
2.30.4.4.1 C.HALOPHILUM 1 seq
2.30.4.4.1.8127 OTU 1 seq
prokMSA_id:14131 X77837 Clostridium halophilum DSM 5387
2.30.4.4.2 AAB.HYDROGENOFORMANS_SUBGROUP 12 seqs
2.30.4.4.2.1141 OTU 1 seq
prokMSA_id:72230 AF275916 AA05 
2.30.4.4.2.11745 OTU 1 seq
prokMSA_id:66940 AJ306754 clone SHA-58
2.30.4.4.2.20872 OTU 1 seq
prokMSA_id:77964 AB089009 Clostridiaceae clone:Rs-E70
2.30.4.4.2.20859 OTU 1 seq
prokMSA_id:77959 AB089010 Clostridiaceae clone:Rs-F76
2.30.4.4.2.3229 OTU 1 seq
prokMSA_id:50268 AF371945 clone p-5324-2Wa3 
2.30.4.4.2.4547 OTU 1 seq
prokMSA_id:41951 AF255644 clone Ebpr14 
2.30.4.4.2.4649 OTU 1 seq
prokMSA_id:34789 AF371833 clone p-2801-24E5 
2.30.4.4.2.5424 OTU 1 seq
prokMSA_id:27616 AF275922 AA33 
2.30.4.4.2.8131 OTU 1 seq
prokMSA_id:14133 U81761 clone vadinBB35
2.30.4.4.2.8129 OTU 1 seq
prokMSA_id:14132 AF016691 Acidaminobacter hydrogenoformans str. glu 65 DSM 2784
2.30.4.4.2.8134 OTU 1 seq
prokMSA_id:14135 AF050099 Fusibacter paucivorans SEBR 4211
2.30.4.4.2.8138 OTU 1 seq
prokMSA_id:14137 AB013836 str. 48.h
2.30.4.4.4 C.AMINOBUTYRICUM_SUBGROUP 20 seqs
2.30.4.4.4.10269 OTU 1 seq
prokMSA_id:59564 AY134903 sp. oral clone FX028 
2.30.4.4.4.11733 OTU 1 seq
prokMSA_id:66939 AJ306755 clone SHA-74
2.30.4.4.4.1200 OTU 1 seq
prokMSA_id:41514 AB062845 clone:BCf9-13
2.30.4.4.4.12778 OTU 1 seq
prokMSA_id:68350 AF481212 oral clone MCE10_174 E2 
2.30.4.4.4.16775 OTU 1 seq
prokMSA_id:78018 AB088986 clone:Rs-F43
2.30.4.4.4.18299 OTU 1 seq
prokMSA_id:78236 AB088987 clone:Rs-E61
2.30.4.4.4.18790 OTU 1 seq
prokMSA_id:33133 AF371683 clone p-3212-42A2 
2.30.4.4.4.18955 OTU 1 seq
prokMSA_id:78301 AB088960 clone:Rs-N82
2.30.4.4.4.19907 OTU 1 seq
prokMSA_id:77824 AB088948 clone:Rs-M09
2.30.4.4.4.20073 OTU 1 seq
prokMSA_id:77885 AB088954 clone:Rs-N27
2.30.4.4.4.36818 OTU 2 seqs
prokMSA_id:77744 AB088961 clone:Rs-B74
prokMSA_id:77831 AB088970 clone:Rs-Q64
2.30.4.4.4.4797 OTU 1 seq
prokMSA_id:20310 AF371685 clone p-4199-6Wa5 
2.30.4.4.4.5306 OTU 1 seq
prokMSA_id:66192 AJ488072 clone IA-19
2.30.4.4.4.6438 OTU 1 seq
prokMSA_id:51211 AB062842 clone:BCf9-05
2.30.4.4.4.7873 OTU 1 seq
prokMSA_id:42984 AF395430 Eub No. 20 
2.30.4.4.4.8094 OTU 1 seq
prokMSA_id:82172 AB100461 clone: Rs-050
2.30.4.4.4.8159 OTU 1 seq
prokMSA_id:14145 X76161 Clostridium aminobutyricum DSM 2634
2.30.4.4.4.8165 OTU 1 seq
prokMSA_id:14147 AJ012604 PUS9.170
2.30.4.4.4.8167 OTU 1 seq
prokMSA_id:14148 AJ241007 clone Sva1064
2.30.4.4.5 EUB.SAPHENUM 1 seq
2.30.4.4.5.8169 OTU 1 seq
prokMSA_id:14149 U65987 saphenum ATCC 49989
2.30.4.4.6 EUB.NODATUM_SUBGROUP 14 seqs
2.30.4.4.6.10196 OTU 1 seq
prokMSA_id:59533 AF538856 oral clone P2PB_46 P3 
2.30.4.4.6.14980 OTU 1 seq
prokMSA_id:37961 AB034015 rumen 3C0d-17 
2.30.4.4.6.26500 OTU 2 seqs
prokMSA_id:14155 U13041 nodatum str. AK-5 ATCC 33099
prokMSA_id:14156 Z36274 nodatum str. AK-5 ATCC 33099
2.30.4.4.6.31697 OTU 5 seqs
prokMSA_id:14150 Z36275 tardum str. SC 87K
prokMSA_id:14151 AJ005636 minutum ATCC 700079
prokMSA_id:14153 AB020885 minutum ATCC 700079
prokMSA_id:14154 U13037 tardum str. SC 87K
prokMSA_id:72513 U13037 tardum SC 87K 
2.30.4.4.6.32961 OTU 4 seqs
prokMSA_id:23113 AB034148 rumen 3C28d-4 
prokMSA_id:39613 AB034093 rumen 4C3d-12 
prokMSA_id:43800 AB034092 rumen 3C3d-6 
prokMSA_id:50860 AJ310135 pyruvivorans 
2.30.4.4.6.8192 OTU 1 seq
prokMSA_id:14152 AF044945 C2 str. C2
2.30.4.4.7 EUB.BRACHY_SUBGROUP 27 seqs
2.30.4.4.7.10270 OTU 1 seq
prokMSA_id:59565 AY134904 sp. oral clone FX033 
2.30.4.4.7.10560 OTU 1 seq
prokMSA_id:52379 AJ251215 Anaerovorax odorimutans strain NorPut
2.30.4.4.7.11063 OTU 1 seq
prokMSA_id:36792 AF371686 clone p-83-a5 
2.30.4.4.7.13715 OTU 1 seq
prokMSA_id:44950 AB034041 rumen 5C0d-8 
2.30.4.4.7.16370 OTU 1 seq
prokMSA_id:16550 AB034147 rumen 4C28d-20 
2.30.4.4.7.18303 OTU 1 seq
prokMSA_id:18066 AB034010 rumen 3C0d-10 
2.30.4.4.7.19065 OTU 1 seq
prokMSA_id:78354 AB088955 clone:Rs-M13
2.30.4.4.7.27045 OTU 2 seqs
prokMSA_id:14163 Z36296 timidum
prokMSA_id:14166 U13042 timidum
2.30.4.4.7.27053 OTU 2 seqs
prokMSA_id:14165 AF001766 clone RF35
prokMSA_id:17051 AB034004 rumen 3C0d-4 
2.30.4.4.7.31545 OTU 2 seqs
prokMSA_id:28381 AF371687 clone p-1032-a5 
prokMSA_id:76547 AY167964 Swine manure 37-2 
2.30.4.4.7.31632 OTU 3 seqs
prokMSA_id:14160 AJ006963 Fusobacterium sulci ATCC 35585
prokMSA_id:34881 AF287761 sp. oral strain A35MT 
prokMSA_id:71791 U13039 infirmum W 1471 
2.30.4.4.7.32794 OTU 4 seqs
prokMSA_id:14164 AB021701 Mogibacterium pumilum str. D2-18
prokMSA_id:14167 AB021702 Mogibacterium vescum str. D5-2
prokMSA_id:18995 AB037874 Mogibacterium diversum 
prokMSA_id:46159 AB037875 Mogibacterium neglectum 
2.30.4.4.7.5076 OTU 1 seq
prokMSA_id:43267 AF371688 clone p-648-a5 
2.30.4.4.7.5874 OTU 1 seq
prokMSA_id:43339 AF287762 sp. oral clone CK047 
2.30.4.4.7.6755 OTU 1 seq
prokMSA_id:36226 AF371681 clone p-3263-42A2 
2.30.4.4.7.8200 OTU 1 seq
prokMSA_id:14158 U13038 brachy str. BR-179 ATCC 33089
2.30.4.4.7.8201 OTU 1 seq
prokMSA_id:14159 Z36273 infirmum str. W 1471; clone 1471-3
2.30.4.4.7.8223 OTU 1 seq
prokMSA_id:14161 AF001753 clone RF21
2.30.4.4.7.9774 OTU 1 seq
prokMSA_id:44410 AB034014 rumen 3C0d-16 
2.30.4.5 C.LITUSEBURENSE_GROUP 89 seqs
2.30.4.5.1 C.FORMICOACETICUM_SUBGROUP 19 seqs
2.30.4.5.1.10356 OTU 1 seq
prokMSA_id:28874 AF373919 Tindallia sp. APO 
2.30.4.5.1.11415 OTU 1 seq
prokMSA_id:45283 AF467248 Alkaliphilus crotonoxidans 
2.30.4.5.1.1213 OTU 1 seq
prokMSA_id:71603 AJ271456 Clostridium alcaliphilum isolate B8NS1-A
2.30.4.5.1.12254 OTU 1 seq
prokMSA_id:67640 AF458779 Clostridium subatlanticum 
2.30.4.5.1.13840 OTU 1 seq
prokMSA_id:60603 AF407695 clone R82 
2.30.4.5.1.13845 OTU 1 seq
prokMSA_id:60608 AF407690 clone R35 
2.30.4.5.1.1568 OTU 1 seq
prokMSA_id:25925 AB037677 Alkalliphilus auruminator 
2.30.4.5.1.1570 OTU 1 seq
prokMSA_id:79538 AJ431241 Clostridium sp. Dex60-28 strain Dex60-28
2.30.4.5.1.16175 OTU 1 seq
prokMSA_id:31552 AF349758 TCE8 
2.30.4.5.1.18082 OTU 1 seq
prokMSA_id:40259 Y18183 Clostridium aceticum strain DSM 1496
2.30.4.5.1.40776 OTU 2 seqs
prokMSA_id:79318 AJ431244 Clostridium sp. Dex60-75 strain Dex60-75
prokMSA_id:79586 AJ431242 Clostridium sp. Dex60-4 strain Dex60-4
2.30.4.5.1.4250 OTU 1 seq
prokMSA_id:43181 Y16716 Natronoincola histidinovorans 
2.30.4.5.1.6 OTU 1 seq
prokMSA_id:19154 AJ271453 Clostridium elmenteitii isolate E2SE1-B
2.30.4.5.1.820 OTU 1 seq
prokMSA_id:55916 AF523884 clone RCP2-16 
2.30.4.5.1.8243 OTU 1 seq
prokMSA_id:14169 X77851 Clostridium felsineum DSM 794
2.30.4.5.1.8241 OTU 1 seq
prokMSA_id:14168 X77836 Clostridium formicoaceticum DSM 92
2.30.4.5.1.8823 OTU 1 seq
prokMSA_id:58790 AY137848 Alkaliphils metalliredigenes 
2.30.4.5.1.9973 OTU 1 seq
prokMSA_id:51694 AJ320233 Caminibacillus sporogenes strain AM1114
2.30.4.5.2 C.STICKLANDII_SUBGROUP 8 seqs
2.30.4.5.2.10255 OTU 1 seq
prokMSA_id:73998 AF287764 sp. oral clone BB142 
2.30.4.5.2.11160 OTU 1 seq
prokMSA_id:60259 AF537211 Filifactor villosus strain DSM1645 
2.30.4.5.2.12192 OTU 1 seq
prokMSA_id:51973 AF450134 Frigovirgula patagoniensis 
2.30.4.5.2.13861 OTU 1 seq
prokMSA_id:60617 AF407679 clone Y36 
2.30.4.5.2.5312 OTU 1 seq
prokMSA_id:66195 AJ488068 clone IA-11
2.30.4.5.2.8281 OTU 1 seq
prokMSA_id:14178 AJ006962 Fusobacterium alocis ATCC 35896
2.30.4.5.2.8279 OTU 1 seq
prokMSA_id:14177 X73452 Filifactor villosus ATCC 33388
2.30.4.5.2.8316 OTU 1 seq
prokMSA_id:14182 AF071416 acidaminophilum str. a1-2 DSM 3953
2.30.4.5.3 C.PARADOXUM_SUBGROUP 17 seqs
2.30.4.5.3.13434 OTU 1 seq
prokMSA_id:76251 AY158079 Tepidibacter thalassicus 
2.30.4.5.3.41893 OTU 15 seqs
prokMSA_id:14185 Z69927 Clostridium paradoxum str. JW-YL-7 DSM 7308
prokMSA_id:14186 Z69928 Clostridium paradoxum str. JW-YL-7 DSM 7308
prokMSA_id:14187 Z69941 Clostridium paradoxum str. JW-YL-7 DSM 7308
prokMSA_id:14188 Z69940 Clostridium paradoxum str. JW-YL-7 DSM 7308
prokMSA_id:14189 Z69929 Clostridium paradoxum str. JW-YL-7 DSM 7308
prokMSA_id:14190 Z69930 Clostridium paradoxum str. JW-YL-7 DSM 7308
prokMSA_id:14191 Z69931 Clostridium paradoxum str. JW-YL-7 DSM 7308
prokMSA_id:14192 Z69935 Clostridium paradoxum str. JW-YL-7 DSM 7308
prokMSA_id:14193 Z69932 Clostridium paradoxum str. JW-YL-7 DSM 7308
prokMSA_id:14194 Z69936 Clostridium paradoxum str. JW-YL-7 DSM 7308
prokMSA_id:14195 Z69937 Clostridium paradoxum str. JW-YL-7 DSM 7308
prokMSA_id:14196 Z69933 Clostridium paradoxum str. JW-YL-7 DSM 7308
prokMSA_id:14197 Z69938 Clostridium paradoxum str. JW-YL-7 DSM 7308
prokMSA_id:14198 Z69934 Clostridium paradoxum str. JW-YL-7 DSM 7308
prokMSA_id:14199 Z69939 Clostridium paradoxum str. JW-YL-7 DSM 7308
2.30.4.5.3.8320 OTU 1 seq
prokMSA_id:14184 Z69942 Clostridium paradoxum str. JW-YL-7 DSM 7308
2.30.4.5.4 EUB.TENUE_SUBGROUP 20 seqs
2.30.4.5.4.10528 OTU 1 seq
prokMSA_id:45149 AF268999 SBR2060 
2.30.4.5.4.11635 OTU 1 seq
prokMSA_id:44695 AF262237 Clostridium sp. TO-931 
2.30.4.5.4.15355 OTU 1 seq
prokMSA_id:22963 AF268998 SBR2096 
2.30.4.5.4.16439 OTU 1 seq
prokMSA_id:39443 AF385506 TM7 phylum sp. oral clone CW040 
2.30.4.5.4.16990 OTU 1 seq
prokMSA_id:16614 AF385568 TM7 phylum sp. oral clone BU080 
2.30.4.5.4.17028 OTU 1 seq
prokMSA_id:46716 AB075771 Clostridium sordellii 
2.30.4.5.4.18151 OTU 1 seq
prokMSA_id:70379 AF385520 TM7 phylum sp. oral clone DR034 
2.30.4.5.4.20291 OTU 1 seq
prokMSA_id:26128 AJ318136 clone BIgi18
2.30.4.5.4.21591 OTU 1 seq
prokMSA_id:17873 AF445701 candidate division TM7 clone SM1G12 
2.30.4.5.4.26454 OTU 2 seqs
prokMSA_id:33116 AF224674 Clostridium sp. FL3 
prokMSA_id:39630 AF224675 Clostridium sp. FL4 
2.30.4.5.4.33169 OTU 3 seqs
prokMSA_id:65413 AF513108 clone 8A 
prokMSA_id:65418 AF513103 clone 734 
prokMSA_id:72510 AF513104 clone 75 
2.30.4.5.4.42852 OTU 2 seqs
prokMSA_id:77629 AB074646 clone:APe2_24
prokMSA_id:78146 AB074647 clone:APe2_91
2.30.4.5.4.5655 OTU 1 seq
prokMSA_id:81216 AB100499 candidate division TM7 clone: Rs-045
2.30.4.5.4.6350 OTU 1 seq
prokMSA_id:65697 AF507686 soil clone C026 
2.30.4.5.4.7224 OTU 1 seq
prokMSA_id:21239 AY005448 sp. oral clone BS003 
2.30.4.5.4.8922 OTU 1 seq
prokMSA_id:14203 AF125204 clone AH040
2.30.4.5.5 C.BIFERMENTANS_SUBGROUP 8 seqs
2.30.4.5.5.32988 OTU 8 seqs
prokMSA_id:14207 X73437 Clostridium bifermentans NCIMB 10716
prokMSA_id:14209 Y18787 Clostridium bifermentans str. DPH-1
prokMSA_id:29530 X75906 C.bifermentans 
prokMSA_id:51941 AF320283 Clostridium bifermentans 
prokMSA_id:70590 AB075769 Clostridium paraputrificum 
prokMSA_id:75054 AY167941 Swine manure RT-4B 
prokMSA_id:76631 AY167932 Swine manure RT-1A 
prokMSA_id:76955 AY167944 Swine manure RT-5A 
2.30.4.5.6 C.LITUSEBURENSE 3 seqs
2.30.4.5.6.21253 OTU 1 seq
prokMSA_id:70793 AJ306761 clone SHA-123
2.30.4.5.6.21851 OTU 1 seq
prokMSA_id:70837 AF371691 clone p-478-o2 
2.30.4.5.6.8947 OTU 1 seq
prokMSA_id:14211 M59107 Clostridium lituseburense ATCC 25759
2.30.4.5.7 C.GLYCOLICUM_SUBGROUP 4 seqs
2.30.4.5.7.33391 OTU 4 seqs
prokMSA_id:14212 X76750 Clostridium glycolicum DSM 1288
prokMSA_id:21834 AJ409003 clone HuCB31
prokMSA_id:38819 AJ404682 ZF5 
prokMSA_id:40074 AY007244 Clostridium glycolicum 
2.30.4.5.8 C.DIFFICILE_SUBGROUP 2 seqs
2.30.4.5.8.30147 OTU 2 seqs
prokMSA_id:14216 AF072473 Clostridium difficile VPI 10463
prokMSA_id:14217 AF072474 Clostridium difficile str. 79685
2.30.4.5.10 PPS.ANAEROBIUS_SUBGROUP 8 seqs
2.30.4.5.10.18182 OTU 1 seq
prokMSA_id:33092 AF287763 Peptostreptococcus sp. oral clone CK035 
2.30.4.5.10.37704 OTU 6 seqs
prokMSA_id:75534 AY167949 Swine manure RT-8A 
prokMSA_id:75733 AY167962 Swine manure RT-23A 
prokMSA_id:76083 AY167963 Swine manure 37-1 
prokMSA_id:76167 AY167957 Swine manure RT-19A 
prokMSA_id:76533 AY167954 Swine manure RT-13B 
prokMSA_id:76636 AY167952 Swine manure RT-10B 
2.30.4.5.10.8989 OTU 1 seq
prokMSA_id:14228 AF044947 Peptostreptococcus D1 str. D1
2.30.5 C.PURINOLYTICUM_GROUP 68 seqs
2.30.5.1 C.PURINOLYTICUM_SUBGROUP 47 seqs
2.30.5.1.13745 OTU 1 seq
prokMSA_id:67841 AY082466 low G+C Gram-positive clone 44a-B1-37 
2.30.5.1.19901 OTU 1 seq
prokMSA_id:77821 AB088988 clone:Rs-H81
2.30.5.1.21084 OTU 1 seq
prokMSA_id:34061 AF371692 clone p-3402-SwA2 
2.30.5.1.21153 OTU 1 seq
prokMSA_id:33448 AF113543 Thermohalobacter berrensis complete 
2.30.5.1.21493 OTU 1 seq
prokMSA_id:17818 AY013607 Banisveld landfill BVA18 
2.30.5.1.28345 OTU 6 seqs
prokMSA_id:14235 M59120 limosum ATCC 8486
prokMSA_id:14240 X96961 callanderi str. FD DSM 3662
prokMSA_id:14241 AF064241 Clostridium 'Butyribacterium methylotrophicum'
prokMSA_id:14242 AF064242 limosum str. PM31
prokMSA_id:14243 U67159 limosum str. kist612
prokMSA_id:37240 AF427914 clone 9D 
2.30.5.1.33346 OTU 4 seqs
prokMSA_id:20221 AB036761 Pseudoramibacter alactolyticus strain:9p-21
prokMSA_id:30675 AB036760 Pseudoramibacter alactolyticus strain:146-3
prokMSA_id:46867 AB036759 Pseudoramibacter alactolyticus strain:23263T
prokMSA_id:70847 AF287778 Firmicutes sp. oral clone CK057 
2.30.5.1.42733 OTU 24 seqs
prokMSA_id:14230 X96955 Acetobacterium wieringae str. C DSM 1911
prokMSA_id:14232 X96957 Acetobacterium malicum str. MuME1 DSM 4132
prokMSA_id:14233 X95232 clone Aspo4
prokMSA_id:14234 AF132739 Acetobacterium psammolithicum str. CN-E
prokMSA_id:14255 X96956 Acetobacterium carbinolicum str. WoProp 1 DSM 2925
prokMSA_id:27312 AY013610 Banisveld landfill BVA53 
prokMSA_id:32798 AB030612 epsilon 1055 
prokMSA_id:66182 AJ488081 clone IB-28
prokMSA_id:70260 AF479584 Acetobacterium sp. HAAP-1 
prokMSA_id:75865 AB086092 Acetobacterium sp. TM20-2 
prokMSA_id:77494 AJ535706 Acetobacterium sp. clone A4
prokMSA_id:79093 AY185323 Acetobacterium sp. clone AKS29 
prokMSA_id:79098 AY185319 Acetobacterium sp. clone AKS04 
prokMSA_id:79162 AY185321 Acetobacterium sp. clone AKS17 
prokMSA_id:79235 AY185311 Acetobacterium sp. clone ARC03 
prokMSA_id:79278 AY185310 Acetobacterium sp. clone ARC01 
prokMSA_id:79314 AY185312 Acetobacterium sp. clone ARC05 
prokMSA_id:79459 AY185330 Acetobacterium sp. clone AKS70 
prokMSA_id:79463 AY185326 Acetobacterium sp. clone AKS48 
prokMSA_id:79515 AY185318 Acetobacterium sp. clone AKS02 
prokMSA_id:79527 AY185327 Acetobacterium sp. clone AKS55 
prokMSA_id:79549 AY185325 Acetobacterium sp. clone AKS42 
prokMSA_id:79573 AY185315 Acetobacterium sp. clone ARC44 
prokMSA_id:82262 AY214194 clone ZZ14C8 
2.30.5.1.9013 OTU 1 seq
prokMSA_id:14231 X96960 Acetobacterium bakii str. Z-4391 DSM 8239
2.30.5.1.9032 OTU 1 seq
prokMSA_id:14237 X96954 Acetobacterium woodii str. WB1 DSM 1030
2.30.5.1.9074 OTU 1 seq
prokMSA_id:14249 X96958 Acetobacterium paludosum str. Z-4092 DSM 8237
2.30.5.1.9094 OTU 1 seq
prokMSA_id:14250 L10086 thermomarinus
2.30.5.1.9098 OTU 1 seq
prokMSA_id:14252 M23927 barkeri ATCC 25849
2.30.5.1.9101 OTU 1 seq
prokMSA_id:14253 AF073898 aggregans str. SR12 DSM 12183
2.30.5.1.9113 OTU 1 seq
prokMSA_id:14257 X96959 Acetobacterium fimetarium str. Z-4290 DSM 8238
2.30.5.1.9492 OTU 1 seq
prokMSA_id:28721 AF227847 str. 77003 
2.30.5.2 C.HYDROXYBENZOICUM_SUBGROUP 4 seqs
2.30.5.2.21421 OTU 1 seq
prokMSA_id:49196 AF433166 Clostridium hongkongensis 
2.30.5.2.2229 OTU 1 seq
prokMSA_id:34493 AF427155 Clostridium sp. LTR1 
2.30.5.2.8147 OTU 1 seq
prokMSA_id:51443 AJ404680 ZF2 
2.30.5.2.9770 OTU 1 seq
prokMSA_id:82374 AY217438 MTCE-T2 9H 
2.30.5.3 TSS.PRAEACUTA_SUBGROUP 7 seqs
2.30.5.3.10276 OTU 1 seq
prokMSA_id:59568 AY134899 Peptostreptococcus sp. oral clone EX153 
2.30.5.3.13973 OTU 1 seq
prokMSA_id:52800 AJ318205 Clostridium sp. 4 
2.30.5.3.14956 OTU 1 seq
prokMSA_id:38592 AF317361 feedlot manure B1 
2.30.5.3.7132 OTU 1 seq
prokMSA_id:82015 AY217429 MTCE-T2 1G 
2.30.5.3.9130 OTU 1 seq
prokMSA_id:14264 X77848 Clostridium hastiforme DSM 5675
2.30.5.3.9137 OTU 1 seq
prokMSA_id:14266 X75909 Clostridium sp. str. BN II
2.30.5.3.9134 OTU 1 seq
prokMSA_id:14265 X80227 Tissierella creatinophila str. KRE 4 DSM 6911
2.30.5.4 HLC.KUNZII_SUBGROUP 2 seqs
2.30.5.4.9154 OTU 1 seq
prokMSA_id:14270 X69837 Helcococcus kunzii NCFB 2900
2.30.5.4.9157 OTU 1 seq
prokMSA_id:14271 Y16279 Helcococcus 'CCUG 37441' str. s840-96-2 CCUG 37441
2.30.5.5 PPS.MICROS_SUBGROUP 4 seqs
2.30.5.5.29906 OTU 3 seqs
prokMSA_id:28712 AF385543 Peptostreptocooccus sp. oral clone FG014 
prokMSA_id:36599 AF385559 Peptostreptococcus sp. oral clone BS044 
prokMSA_id:68360 AJ277208 Peptostreptococcus sp. strain CCUG 42997
2.30.5.5.4037 OTU 1 seq
prokMSA_id:81082 AY169413 Finegoldia magna clone 1-9 
2.30.5.7 PPS.INDOLICUS_SUBGROUP 1 seq
2.30.5.7.8373 OTU 1 seq
prokMSA_id:81585 AY169425 Finegoldia magna clone 1-68 
2.30.5.8 PPS.TETRADIUS_SUBGROUP 3 seqs
2.30.5.8.10351 OTU 1 seq
prokMSA_id:30062 AF408269 Peptostreptococcus sp. clone KL-59-7-12 
2.30.5.8.9213 OTU 1 seq
prokMSA_id:14289 D14154 Peptostreptococcus lactolyticus GIFU 8586
2.30.5.8.9235 OTU 1 seq
prokMSA_id:14290 Y07841 Peptostreptococcus octavius str. Davey 1 NCTC 9810
2.30.6 ANAEROBIC_HALOPHILES 31 seqs
2.30.6.1 HLA.CHITINOVORANS_SUBGROUP 11 seqs
2.30.6.1.18053 OTU 1 seq
prokMSA_id:69790 Y18485 Orenia salinaria 
2.30.6.1.29274 OTU 2 seqs
prokMSA_id:14293 Y14212 Haloanaerobacter salinarius str. SG3903
prokMSA_id:14294 X89076 Haloanaerobacter chitinovorans str. W5C8 OGC 229
2.30.6.1.9240 OTU 1 seq
prokMSA_id:14292 U32593 Haloanaerobacter lacunaris str. Z-7888 DSM 6640
2.30.6.1.9255 OTU 1 seq
prokMSA_id:14299 U32596 Haloanaerobacter chitinovorans str. W5C8 OCM 229
2.30.6.1.9251 OTU 1 seq
prokMSA_id:14295 X89075 Haloanaerobacter lacunaris str. Z-7888 DSM 6640
2.30.6.1.9689 OTU 1 seq
prokMSA_id:14300 U32595 Halobacteroides halobius str. MD-1 ATCC 35273
2.30.6.1.9692 OTU 1 seq
prokMSA_id:14303 X95817 Natroniella acetigena
2.30.6.1.9690 OTU 1 seq
prokMSA_id:14301 X89074 Halobacteroides halobius str. MD-1 DSM 5150
2.30.6.1.9694 OTU 1 seq
prokMSA_id:14304 AF152595 Orenia sivashensis str. Z-7191
2.30.6.1.9691 OTU 1 seq
prokMSA_id:14302 X89073 Orenia marismortui str. DY-1 DSM 5156
2.30.6.2 ACH.ARABATICUM_SUBGROUP 3 seqs
2.30.6.2.15476 OTU 1 seq
prokMSA_id:45870 AF310247 Selenohalobacter shriftii 
2.30.6.2.9699 OTU 1 seq
prokMSA_id:14308 X89077 Acetohalobium arabaticum str. Z-7288 DSM 5501
2.30.6.2.9697 OTU 1 seq
prokMSA_id:14307 M59122 Sporohalobacter lortetii str. MD-2 ATCC 35059
2.30.6.3 HALOANAEROBIUM_GROUP 17 seqs
2.30.6.3.1 HTT.ORENII_SUBGROUP 1 seq
2.30.6.3.1.9701 OTU 1 seq
prokMSA_id:14309 L22016 Halothermothrix orenii str. H168 OCM 544
2.30.6.3.2 HCL.CELLULOLYTICA_SUBGROUP 1 seq
2.30.6.3.2.9714 OTU 1 seq
prokMSA_id:14311 X89072 Halocella cellulolytica str. Z-10151 DSM 7362
2.30.6.3.3 HAN.PRAEVALENS_SUBGROUP 15 seqs
2.30.6.3.3.31921 OTU 5 seqs
prokMSA_id:14315 U32594 Haloanaerobium acetoethylicum str. EIGI DSM 3532
prokMSA_id:14316 X89071 Haloanaerobium acetoethylicum str. EIGI DSM 3532
prokMSA_id:14319 AB022034 Haloanaerobium praevalens DSM 2228
prokMSA_id:14321 AB022035 Haloanaerobium praevalens str. strain S-8 from the can of Sw
prokMSA_id:49598 AJ309519 Halanaerobium sp. KT-2/3-3 
2.30.6.3.3.34375 OTU 4 seqs
prokMSA_id:23398 AJ309520 Halanaerobium sp. KT-8-13 
prokMSA_id:23710 AJ309524 Red Sea KT-2K23 
prokMSA_id:24600 AJ309525 Red Sea KT-2K28 
prokMSA_id:49272 AJ309521 Halanaerobium sp. S5L4 
2.30.6.3.3.42882 OTU 2 seqs
prokMSA_id:14324 X89070 Haloanaerobium saccharolyticum subsp. senegalense DSM 7379
prokMSA_id:14326 X89069 Haloanaerobium saccharolyticum subsp. saccharolyticum str. Z
2.30.6.3.3.9715 OTU 1 seq
prokMSA_id:14313 L22890 Haloanaerobium salsugo str. VS-752 ATCC 51327
2.30.6.3.3.9716 OTU 1 seq
prokMSA_id:14314 L39787 Haloanaerobium lacuroseus str. H200 DSM 10165
2.30.6.3.3.9756 OTU 1 seq
prokMSA_id:14323 Z49116 Haloanaerobium saccharolyticum subsp. senegalense str. H150
2.30.6.3.3.9768 OTU 1 seq
prokMSA_id:14328 Z49115 Haloanaerobium saccharolyticum subsp. saccharolyticum str. Z
2.30.7 BACILLUS-LACTOBACILLUS-STREPTOCOCCUS_SUBDIVISION 2112 seqs
2.30.7.1 ALICYCLOBACILLUS_GROUP 64 seqs
2.30.7.1.11380 OTU 1 seq
prokMSA_id:44616 AB042055 Alicyclobacillus herbarius 
2.30.7.1.13025 OTU 1 seq
prokMSA_id:29823 AB052970 Mixotrophic iron-oxidizing 
2.30.7.1.13250 OTU 1 seq
prokMSA_id:60544 AY079150 Sulfobacillus sibiricus 
2.30.7.1.13650 OTU 1 seq
prokMSA_id:68451 AY081911 Pasteuria sp. clone NCf4 
2.30.7.1.14512 OTU 1 seq
prokMSA_id:23447 AB059677 Alicyclobacillus sp. TA 67T strain:TA 67T
2.30.7.1.1456 OTU 1 seq
prokMSA_id:26544 AY007663 Sulfobacillus montserratensis strain L15 
2.30.7.1.19017 OTU 1 seq
prokMSA_id:25382 AF213055 Sulfobacillus sp. Fras1 
2.30.7.1.19998 OTU 1 seq
prokMSA_id:17688 AF134868 Pasteuria sp. NA 
2.30.7.1.20665 OTU 1 seq
prokMSA_id:25597 AB059675 Alicyclobacillus acidoterrestris strain:DSM 2498
2.30.7.1.21066 OTU 1 seq
prokMSA_id:41279 AF460985 Sulfobacillus sp. P3-5 
2.30.7.1.27779 OTU 5 seqs
prokMSA_id:14346 X51928 Alicyclobacillus cycloheptanicus
prokMSA_id:21935 AB042059 Alicyclobacillus cycloheptanicus 
prokMSA_id:40466 AB059681 Alicyclobacillus cycloheptanicus strain:DSM 4007
prokMSA_id:45506 AB059680 Alicyclobacillus cycloheptanicus strain:DSM 4005
prokMSA_id:63190 X52489 Bacillus cycloheptanicus 
2.30.7.1.30584 OTU 2 seqs
prokMSA_id:16300 AY007662 GSM 
prokMSA_id:24598 AF450135 Alicyclobacillus sp. AGC-2 
2.30.7.1.31782 OTU 3 seqs
prokMSA_id:58331 AY140234 Sulfobacillus sp. GG6/1 
prokMSA_id:64391 AY121610 Sulfobacillus sp. NC 
prokMSA_id:66335 AF507964 Sulfobacillus sp. YTF3 
2.30.7.1.32899 OTU 5 seqs
prokMSA_id:18589 AB042057 Alicyclobacillus acidoterrestris 
prokMSA_id:18608 AB042058 Alicyclobacillus acidoterrestris 
prokMSA_id:19970 AB059678 Alicyclobacillus hesperidum strain:DSM 12489T
prokMSA_id:23138 AB059679 Alicyclobacillus hesperidum strain:DSM 12766
prokMSA_id:30963 AB059676 Alicyclobacillus acidoterrestris strain:DSM 3924
2.30.7.1.33141 OTU 3 seqs
prokMSA_id:14351 X72853 gram neg iron oxidizing related to isolates BC and ALV clone
prokMSA_id:21716 AF226671 BU138 
prokMSA_id:38687 AF460984 Sulfobacillus sp. K55 
2.30.7.1.34465 OTU 23 seqs
prokMSA_id:14334 X60742 Alicyclobacillus acidocaldarius str. 104-1A DSM 446
prokMSA_id:14335 AB004579 Alicyclobacillus sp. str. UZ-1
prokMSA_id:14336 AB004580 Alicyclobacillus sp. str. MIH-2
prokMSA_id:14337 AB004581 Alicyclobacillus sp. str. KHA-31
prokMSA_id:14345 X60743 Alicyclobacillus acidoterrestris DSM 3923
prokMSA_id:18771 AB060163 Alicyclobacillus sp. KHC 3 
prokMSA_id:23797 AJ133635 Alicyclobacillus sp. strain FR-6
prokMSA_id:24070 AB059663 Alicyclobacillus acidocaldarius strain:DSM 453
prokMSA_id:27630 AB059664 Alicyclobacillus acidocaldarius strain:DSM 454
prokMSA_id:30162 AJ133634 Alicyclobacillus sp. strain FR-3
prokMSA_id:32908 AB059672 Alicyclobacillus acidocaldarius strain:DSM 451
prokMSA_id:34592 AB059673 Alicyclobacillus acidocaldarius strain:DSM 452
prokMSA_id:36997 AB060164 Alicyclobacillus sp. KHA 31 
prokMSA_id:37680 AB059669 Alicyclobacillus sp. DSM 12490 strain:DSM 12490
prokMSA_id:38100 AB042056 Alicyclobacillus acidocaldarius 
prokMSA_id:38406 AB059665 Alicyclobacillus acidocaldarius strain:DSM 455
prokMSA_id:39237 AB059667 Alicyclobacillus sp. FR-3 strain:DSM 11983
prokMSA_id:41120 AB060165 Alicyclobacillus sp. MIH 332 
prokMSA_id:41149 AB060162 Alicyclobacillus sp. MIH 2 
prokMSA_id:45336 AB059668 Alicyclobacillus hesperidum strain:DSM 11984T
prokMSA_id:48546 AB060161 Alicyclobacillus sp. UZ 1 
prokMSA_id:55934 AJ496806 Alicyclobacillus acidocaldarius strain DSM 446
prokMSA_id:76073 AY160968 Alicyclobacillus sp. PK-1 
2.30.7.1.42602 OTU 2 seqs
prokMSA_id:14339 X75270 Sulfobacillus sp. str. C-MT1
prokMSA_id:58332 AY140233 Sulfobacillus sp. G2 
2.30.7.1.5290 OTU 1 seq
prokMSA_id:58313 AF543505 clone BA8 
2.30.7.1.5323 OTU 1 seq
prokMSA_id:58320 AY140239 Sulfobacillus sp. Y0017 
2.30.7.1.5328 OTU 1 seq
prokMSA_id:58324 AY140236 Gram-positive heterotrophic acidophile Y004 
2.30.7.1.6804 OTU 1 seq
prokMSA_id:73543 AY007664 Sulfobacillus ambivalens strain RIV14 
2.30.7.1.7240 OTU 1 seq
prokMSA_id:51329 AY040739 Gram-positive iron-oxidizing acidophile SLC66 
2.30.7.1.9791 OTU 1 seq
prokMSA_id:14331 Z26933 Bacillus tusciae DSM 2912
2.30.7.1.9795 OTU 1 seq
prokMSA_id:14332 U34974 Sulfobacillus disulfidooxidans str. SD-11
2.30.7.1.9831 OTU 1 seq
prokMSA_id:14342 U75648 Sulfobacillus thermosulfidooxidans str. BC1
2.30.7.1.9828 OTU 1 seq
prokMSA_id:14341 X91080 Sulfobacillus thermosulfidooxidans
2.30.7.1.9835 OTU 1 seq
prokMSA_id:14344 AF077672 Pasteuria penetrans str. P-20; P-100
2.30.7.1.9841 OTU 1 seq
prokMSA_id:14347 X60741 Alicyclobacillus acidocaldarius str. TDBrock 115-8 ATCC 4303
2.30.7.4 PAE.POLYMYXA_GROUP 133 seqs
2.30.7.4.1 PAE.MACQUARIENSIS_SUBGROUP 59 seqs
2.30.7.4.1.11169 OTU 1 seq
prokMSA_id:22302 AF378695 Paenibacillus turicensis clone A2 complete 
2.30.7.4.1.12490 OTU 1 seq
prokMSA_id:22513 AF395033 Paenibacillus sp. G296-78 
2.30.7.4.1.14640 OTU 1 seq
prokMSA_id:39149 AF395027 Paenibacillus sp. TB9 
2.30.7.4.1.16381 OTU 1 seq
prokMSA_id:77386 AY167820 Paenibacillus sp. SAFN-007 
2.30.7.4.1.18291 OTU 1 seq
prokMSA_id:48149 AJ316013 Paenibacillus stellifer strain IS
2.30.7.4.1.18459 OTU 1 seq
prokMSA_id:78298 AB073189 Paenibacillus glucanolyticus 
2.30.7.4.1.27604 OTU 2 seqs
prokMSA_id:67648 AJ438302 Paenibacillus sp. R-11600 
prokMSA_id:71618 AJ250319 LMG 18437 strain LMG 18437
2.30.7.4.1.3061 OTU 1 seq
prokMSA_id:49631 AF378698 Paenibacillus turicensis clone B1 complete 
2.30.7.4.1.32009 OTU 8 seqs
prokMSA_id:14359 D85396 Paenibacillus amylolyticus NRRL NRS-290
prokMSA_id:19669 AF324200 Paenibacillus sp. V2 
prokMSA_id:27118 AB052967 Bacillus sp. FE1 
prokMSA_id:40008 AB052966 Bacillus sp. BE1 
prokMSA_id:55541 AJ495806 Paenibacillus sp. p22D 
prokMSA_id:72202 D85396 Paenibacillus amylolyticus 
prokMSA_id:78079 AB073191 Paenibacillus pabuli 
prokMSA_id:78619 AB094470 Paenibacillus sp. 2216.15.16 
2.30.7.4.1.32069 OTU 13 seqs
prokMSA_id:14376 AJ011322 Paenibacillus sp. str. KK19
prokMSA_id:14377 AJ011323 Paenibacillus sp. str. KK20
prokMSA_id:14378 AJ011324 Paenibacillus sp. str. KN24
prokMSA_id:14379 AJ011325 Paenibacillus sp. str. KN25
prokMSA_id:14380 AJ011326 Paenibacillus sp. str. HM26
prokMSA_id:14381 AJ011327 Paenibacillus sp. str. HM31
prokMSA_id:14384 AJ223990 Paenibacillus sp. str. TOD45
prokMSA_id:28853 AJ297712 Paenibacillus sp. isolate P14-7
prokMSA_id:33249 AJ302026 T107 isolate T107
prokMSA_id:40899 AJ288158 Paenibacillus sp. isolate A-234
prokMSA_id:50840 AJ297713 Paenibacillus sp. isolate P22-9
prokMSA_id:78279 AB073364 Paenibacillus borealis 
prokMSA_id:80385 Y13062 B.circulans strain WSBC 20030
2.30.7.4.1.32179 OTU 5 seqs
prokMSA_id:14367 AF021924 Paenibacillus campinasensis str. 324 KCTC 0364BP
prokMSA_id:69797 AB043867 Paenibacillus sp. S39 
prokMSA_id:71978 AB043869 Paenibacillus sp. AG430 
prokMSA_id:72049 AB043866 Paenibacillus sp. 38-2 
prokMSA_id:77903 AB073187 Paenibacillus campinasensis 
2.30.7.4.1.40157 OTU 2 seqs
prokMSA_id:77752 AB073188 Paenibacillus lautus 
prokMSA_id:78091 AJ491842 Paenibacillus lautus strain C2
2.30.7.4.1.41948 OTU 2 seqs
prokMSA_id:77327 AY167800 Paenibacillus sp. SAFN-035 
prokMSA_id:78185 AB073192 Paenibacillus illinoisensis 
2.30.7.4.1.42056 OTU 4 seqs
prokMSA_id:14383 AJ223987 Paenibacillus sp. str. RS19
prokMSA_id:21436 AJ251193 Paenibacillus sp. TRO4 isolate TRO4 =LMG 19081
prokMSA_id:71723 AF227827 Paenibacillus sp. 61724 
prokMSA_id:80571 Y13061 B.circulans strain 1-77
2.30.7.4.1.42402 OTU 4 seqs
prokMSA_id:42642 AJ297714 Paenibacillus sp. isolate P15-9
prokMSA_id:46666 AF378700 Paenibacillus turicensis clone B3 complete 
prokMSA_id:47416 AF378696 Paenibacillus turicensis clone A3a complete 
prokMSA_id:47969 AF378699 Paenibacillus turicensis clone B2 complete 
2.30.7.4.1.42924 OTU 2 seqs
prokMSA_id:14365 X60625 Paenibacillus macquariensis str. 673 NCTC 10419
prokMSA_id:78345 AB073193 Paenibacillus macquariensis 
2.30.7.4.1.4950 OTU 1 seq
prokMSA_id:50444 AF395029 Paenibacillus sp. SB45-2B 
2.30.7.4.1.5626 OTU 1 seq
prokMSA_id:51119 AB046581 Paenibacillus sp. SM-XY60 
2.30.7.4.1.6541 OTU 1 seq
prokMSA_id:74125 AB043868 Paenibacillus sp. 7-5 
2.30.7.4.1.8563 OTU 1 seq
prokMSA_id:73761 AJ431333 Paenibacillus sp. ikaite c7 isolate ikaite c7
2.30.7.4.1.8574 OTU 1 seq
prokMSA_id:80984 AY208751 Paenibacillus favisporus strain GMP01 
2.30.7.4.1.963 OTU 1 seq
prokMSA_id:18657 AJ272249 Paenibacillus sp. CM1 
2.30.7.4.1.9875 OTU 1 seq
prokMSA_id:14360 D85397 Paenibacillus illinoisensis str. 14 NRRL NRS-1356
2.30.7.4.1.9892 OTU 1 seq
prokMSA_id:14368 AJ131119 Paenibacillus sp. str. vortex
2.30.7.4.1.9916 OTU 1 seq
prokMSA_id:14375 AJ011321 Paenibacillus sp. str. KM8
2.30.7.4.1.997 OTU 1 seq
prokMSA_id:18675 AF346495 Bacillus sp. USC14 complete 
2.30.7.4.2 PAE.VALIDUS_SUBGROUP 43 seqs
2.30.7.4.2.10000 OTU 1 seq
prokMSA_id:14396 AJ000984 DA116 
2.30.7.4.2.10531 OTU 1 seq
prokMSA_id:14402 D78465 Paenibacillus alginolyticus str. 3 DSM 5050
2.30.7.4.2.10534 OTU 1 seq
prokMSA_id:14405 AF006077 Bacillus mucilaginosus str. 1480D VKPM B-7519
2.30.7.4.2.10539 OTU 1 seq
prokMSA_id:14409 X77792 Bacillus viscosus ATCC 51155
2.30.7.4.2.10563 OTU 1 seq
prokMSA_id:14413 AJ005795 Thermobacillus xylanolyticus str. XE
2.30.7.4.2.13079 OTU 1 seq
prokMSA_id:29848 AJ345018 Paenibacillus sp. DSM 6358 strain DSM 6358
2.30.7.4.2.14361 OTU 1 seq
prokMSA_id:37854 AJ345023 Paenibacillus agardevorans strain DSM 1355
2.30.7.4.2.1611 OTU 1 seq
prokMSA_id:50002 AJ229199 from anoxic bulk soil clone BSV44
2.30.7.4.2.18528 OTU 1 seq
prokMSA_id:17491 AJ320490 Paenibacillus thiaminolyticus strain DSM 7262T
2.30.7.4.2.18612 OTU 1 seq
prokMSA_id:77692 AB073204 Paenibacillus larvae 
2.30.7.4.2.19128 OTU 1 seq
prokMSA_id:54854 AF320074 Paenibacillus sp. NBT 
2.30.7.4.2.20255 OTU 1 seq
prokMSA_id:70633 AF309814 synthetic wastewater tmbr15-20 complete 
2.30.7.4.2.20544 OTU 1 seq
prokMSA_id:48429 AJ229223 from anoxic bulk soil clone BSV79
2.30.7.4.2.20815 OTU 1 seq
prokMSA_id:77934 AB073362 Paenibacillus alginolyticus 
2.30.7.4.2.2089 OTU 1 seq
prokMSA_id:27231 AJ345021 Paenibacillus sp. DSM 1474 strain DSM 1474
2.30.7.4.2.2421 OTU 1 seq
prokMSA_id:26683 AJ345022 Paenibacillus sp. DSM 34 strain DSM 34
2.30.7.4.2.25018 OTU 2 seqs
prokMSA_id:14386 AF071861 Paenibacillus lentimorbus ATCC 14707
prokMSA_id:77770 AB073199 Paenibacillus lentimorbus 
2.30.7.4.2.26436 OTU 2 seqs
prokMSA_id:40413 AB021183 Bacillus chitinolyticus 
prokMSA_id:73805 AF181573 Paenibacillus cf. polymyxa 
2.30.7.4.2.29123 OTU 2 seqs
prokMSA_id:49027 AY030079 Paenibacillus larvae subsp. larvae 
prokMSA_id:77802 AB073205 Paenibacillus larvae 
2.30.7.4.2.31818 OTU 2 seqs
prokMSA_id:71863 AF309809 synthetic wastewater tmbr11-29 complete 
prokMSA_id:71897 AF309811 synthetic wastewater tmbr11-6 complete 
2.30.7.4.2.33079 OTU 4 seqs
prokMSA_id:35842 AF353683 Paenibacillus naphthalenovorans strain PR-N5 
prokMSA_id:51767 AF353681 Paenibacillus naphthalenovorans strain PR-N1 
prokMSA_id:81627 AB091336 Paenibacillus sp. YK19 
prokMSA_id:82278 AB091335 Paenibacillus sp. YK12 
2.30.7.4.2.396 OTU 1 seq
prokMSA_id:72157 AJ315076 Paenibacillus sp. 19508 
2.30.7.4.2.42186 OTU 6 seqs
prokMSA_id:35596 AB021184 Bacillus ehimensis 
prokMSA_id:42610 AF130254 Paenibacillus koreensis 
prokMSA_id:56275 AY116665 Bacillus ehimensis strain KCTC3748 
prokMSA_id:63560 AY116666 Bacillus ehimensis strain KCTC3757 
prokMSA_id:63561 AY116664 Bacillus ehimensis strain KCTC3747 
prokMSA_id:67227 AF492843 Bacillus sp. NK395 
2.30.7.4.2.42799 OTU 2 seqs
prokMSA_id:14395 AF071860 Paenibacillus popilliae NRRL B-4081
prokMSA_id:78039 AB073198 Paenibacillus popilliae 
2.30.7.4.2.4526 OTU 1 seq
prokMSA_id:28165 AJ320491 Paenibacillus alvei strain DSM 29T
2.30.7.4.2.5718 OTU 1 seq
prokMSA_id:81244 AB091337 Paenibacillus sp. YK20 
2.30.7.4.2.9522 OTU 1 seq
prokMSA_id:28736 AF290916 Paenibacillus sp. AP-20 
2.30.7.4.2.9776 OTU 1 seq
prokMSA_id:44415 AJ345019 Paenibacillus sp. DSM 1482 strain DSM 1482
2.30.7.4.2.9987 OTU 1 seq
prokMSA_id:14390 Y16128 Paenibacillus sp. str. T-168
2.30.7.4.2.9989 OTU 1 seq
prokMSA_id:14391 Y16129 Paenibacillus sp. str. C-168
2.30.7.4.3 PAE.ALVEI_SUBGROUP 1 seq
2.30.7.4.3.19182 OTU 1 seq
prokMSA_id:77745 AB073201 Paenibacillus apiarius 
2.30.7.4.4 PAE.MACERANS_SUBGROUP 2 seqs
2.30.7.4.4.16944 OTU 1 seq
prokMSA_id:77429 AY167814 Paeniacillus sp. SAFN-016 
2.30.7.4.4.5482 OTU 1 seq
prokMSA_id:34851 AF306538 Paenibacillus sp. EE17 
2.30.7.4.5 PAE.AZOTOFIXANS_SUBGROUP 4 seqs
2.30.7.4.5.10604 OTU 1 seq
prokMSA_id:14423 X77846 Paenibacillus azotofixans DSM 1735
2.30.7.4.5.18643 OTU 1 seq
prokMSA_id:71025 AB092351 Paenibacillus fujiensis 
2.30.7.4.5.25907 OTU 2 seqs
prokMSA_id:35604 AJ251195 Paenibacillus azotofixans strain LMG 14658T isolate P3L-5
prokMSA_id:46802 AJ251192 Paenibacillus azotofixans strain ATCC 35681T isolate P3L-5
2.30.7.4.6 PAE.POLYMYXA_SUBGROUP 24 seqs
2.30.7.4.6.10003 OTU 1 seq
prokMSA_id:20958 AF391123 Paenibacillus kribbensis 
2.30.7.4.6.10643 OTU 1 seq
prokMSA_id:14430 AB024598 Bacillus GL1 str. GL1
2.30.7.4.6.1358 OTU 1 seq
prokMSA_id:27158 AF433165 Paenibacillus hongkongensis 
2.30.7.4.6.14066 OTU 1 seq
prokMSA_id:39053 AF312215 Pietermaritzburg Y14-1 
2.30.7.4.6.16375 OTU 1 seq
prokMSA_id:16553 AF227835 str. 31295 
2.30.7.4.6.19011 OTU 1 seq
prokMSA_id:62685 AF507877 low G+C Gram-positive clone ML635J-45 
2.30.7.4.6.21036 OTU 1 seq
prokMSA_id:34044 AF312217 Pietermaritzburg Y14-3 
2.30.7.4.6.37682 OTU 10 seqs
prokMSA_id:14428 D16276 Paenibacillus polymyxa IAM 13419
prokMSA_id:14429 AJ011687 Paenibacillus burgondia str. B2
prokMSA_id:14431 AJ223988 Paenibacillus polymyxa str. PMD230
prokMSA_id:14432 AJ223989 Paenibacillus polymyxa str. CF43
prokMSA_id:16360 AJ271157 Paenibacillus jamilae strain CECT 5266
prokMSA_id:27285 AF273740 Paenibacillus sp. 172 
prokMSA_id:38958 AJ320493 Paenibacillus polymyxa strain DSM 36T
prokMSA_id:42808 AF355463 Paenibacillus polymyxa 
prokMSA_id:44105 AJ320494 Paenibacillus peoriae strain DSM 8320T
prokMSA_id:64883 AF515611 Paenibacillus polymyxa strain GBR-1 
2.30.7.4.6.41622 OTU 4 seqs
prokMSA_id:22251 AF391124 Paenibacillus taejonensis 
prokMSA_id:58395 AJ297715 Paenibacillus sp. isolate P51-3
prokMSA_id:68756 AF479345 Glacial ice G50-L2 
prokMSA_id:77277 AJ318910 Earthworm gut MH72 
2.30.7.4.6.42053 OTU 2 seqs
prokMSA_id:62679 AF507883 low G+C Gram-positive clone ML635J-5 
prokMSA_id:63836 AF454298 Bacillus sp. clone ML1228J-1 
2.30.7.4.6.6140 OTU 1 seq
prokMSA_id:73496 AJ316315 Paenibacillus sp. LMG 20245 strain LMG 20245
2.30.7.5 BB.BREVIS_GROUP 21 seqs
2.30.7.5.10147 OTU 1 seq
prokMSA_id:67396 AJ457160 Brevibacillus sp. AV-Pb 
2.30.7.5.10654 OTU 1 seq
prokMSA_id:14438 AF145827 clone K20-27
2.30.7.5.10669 OTU 1 seq
prokMSA_id:14445 D16271 Brevibacillus laterosporus IAM 12455
2.30.7.5.13260 OTU 1 seq
prokMSA_id:30464 AF269000 SBR2013 
2.30.7.5.20428 OTU 1 seq
prokMSA_id:32738 AF268996 SBR1071 
2.30.7.5.2477 OTU 1 seq
prokMSA_id:20029 AY062020 Brevibacillus sp. SL8 
2.30.7.5.2700 OTU 1 seq
prokMSA_id:72419 AF378231 Brevibacillus invocatus strain LMG 18167 
2.30.7.5.2915 OTU 1 seq
prokMSA_id:27343 AB048253 Brevibacillus agri complete strain:MC-C1
2.30.7.5.40806 OTU 11 seqs
prokMSA_id:14442 D78463 Brevibacillus parabrevis IFO 12334
prokMSA_id:14451 D78454 Brevibacillus agri NRRL NRS-1219
prokMSA_id:25731 AF228763 Brevibacillus sp. Riau 
prokMSA_id:34619 AF408264 Brevibacillus sp. clone KL-13-4-4 
prokMSA_id:38327 AF408265 Brevibacillus sp. clone KL-13-4-10 
prokMSA_id:38999 AJ313027 Brevibacillus sp. MN 47.2a isolate MN 47.2a
prokMSA_id:44838 AB039334 Brevibacillus agri strain:M1-5
prokMSA_id:48767 AB066340 Brevibacterium sp. BN53-1 
prokMSA_id:55876 AB090804 Brevibacillus sp. EK-287 
prokMSA_id:60320 AB090803 Brevibacillus sp. YT-658 
prokMSA_id:79457 AB101593 Brevibacillus brevis 
2.30.7.5.40937 OTU 2 seqs
prokMSA_id:14436 U65892 Brevibacillus agri NRRL NRS-1689
prokMSA_id:71869 AF252328 Brevibacillus sp. HC6 
2.30.7.6 AB.ANEURINILYTICUS_GROUP 16 seqs
2.30.7.6.10725 OTU 1 seq
prokMSA_id:14466 Y14581 Oxalophagus oxalicus str. Alt Ox1 DSM 5503
2.30.7.6.31442 OTU 5 seqs
prokMSA_id:14454 D78462 Aneurinibacillus migulanus ATCC 9999
prokMSA_id:14455 X77789 Bacillus acidovorans ATCC 51159
prokMSA_id:14456 X94195 Aneurinibacillus migulanus DSM 2895
prokMSA_id:14457 D78455 Aneurinibacillus aneurinilyticus ATCC 12856
prokMSA_id:14458 X94194 Aneurinibacillus aneurinilyticus DSM 5562
2.30.7.6.31624 OTU 2 seqs
prokMSA_id:14467 Y14580 Ammoniphilus oxalivorans str. RAOx-FS DSM 11537
prokMSA_id:14469 Y14579 Ammoniphilus oxalaticus str. RAOx-FF
2.30.7.6.31929 OTU 4 seqs
prokMSA_id:14460 X94196 Aneurinibacillus thermoaerophilus str. L420-91 DSM 10154
prokMSA_id:14461 X94197 Aneurinibacillus thermoaerophilus DSM 10155
prokMSA_id:38737 AF252327 Bacillus sp. HC5 
prokMSA_id:71633 AF309816 synthetic wastewater tmbr15-26 complete 
2.30.7.6.35080 OTU 4 seqs
prokMSA_id:22272 AF138737 Thermoactinomyces sacchari KCTC 9790 complete 
prokMSA_id:25830 AF138738 Thermoactinomyces thalpophilus KCTC 9789 complete 
prokMSA_id:33006 AJ251776 Thermoactinomyces putidus 
prokMSA_id:70190 AJ251777 Thermoactinomyces thalpophilus 
2.30.7.7 B.HORTI_SUBGROUP 3 seqs
2.30.7.7.10751 OTU 1 seq
prokMSA_id:14473 AB002644 str. HTA454
2.30.7.7.34752 OTU 2 seqs
prokMSA_id:14471 D87035 Bacillus horti str. K13 JCM 9943
prokMSA_id:14472 AF078813 Bacillus 5215 str. 5215
2.30.7.8 MRC.HALOPHILUS_SUBGROUP 4 seqs
2.30.7.8.10753 OTU 1 seq
prokMSA_id:14475 X90835 Marinococcus halophilus DSM 20408
2.30.7.8.10755 OTU 1 seq
prokMSA_id:14476 AB015022 str. MBIC3303
2.30.7.8.10752 OTU 1 seq
prokMSA_id:14474 X62171 Marinococcus halophilus NCIMB 2178
2.30.7.8.7973 OTU 1 seq
prokMSA_id:82109 AY196980 Marinococcus sp. 3019cM 
2.30.7.9 SPOROLACTOBACILLUS_GROUP 102 seqs
2.30.7.9.1 SPL.INULINUS_SUBGROUP 14 seqs
2.30.7.9.1.24871 OTU 10 seqs
prokMSA_id:14478 D16285 Sporolactobacillus laevis str. M-103 IAM 12387
prokMSA_id:14479 D16289 Sporolactobacillus racemicus str. M-116 IAM 14264
prokMSA_id:14480 D16274 Bacillus myxolacticus str. M-105 IAM 12326
prokMSA_id:14481 D16291 Sporolactobacillus racemicus str. M-17 IAM 12396
prokMSA_id:14482 D16286 Sporolactobacillus laevis str. M-114 IAM 12388
prokMSA_id:14483 D16269 Bacillus laevolacticus str. M-1 IAM 12322
prokMSA_id:14484 D16287 Sporolactobacillus laevis str. M-18 IAM 14263
prokMSA_id:14486 D16270 Bacillus laevolacticus str. M-8 IAM 12321
prokMSA_id:14488 D16278 Bacillus laevolacticus str. M-14 IAM 12318
prokMSA_id:14491 D16290 Sporolactobacillus racemicus str. M-16 IAM 12395
2.30.7.9.1.32703 OTU 4 seqs
prokMSA_id:14477 D16283 Sporolactobacillus inulinus JCM 6014
prokMSA_id:14489 D16288 Sporolactobacillus racemicus str. M-86 IAM 12384
prokMSA_id:14490 D16284 Sporolactobacillus inulinus NRIC 1134
prokMSA_id:79523 AB101595 Sporolactobacillus inulinus 
2.30.7.9.2 B.RACEMILACTICUS 1 seq
2.30.7.9.2.10819 OTU 1 seq
prokMSA_id:14492 D16279 Bacillus racemilacticus str. M-5 IAM 12319
2.30.7.9.3 B.ALCALOPHILUS_SUBGROUP 87 seqs
2.30.7.9.3.10805 OTU 1 seq
prokMSA_id:44577 X92159 sp. Lake Nakuru isolate 18N1
2.30.7.9.3.10832 OTU 1 seq
prokMSA_id:14499 X76444 Bacillus sp. DSM 8720
2.30.7.9.3.10829 OTU 1 seq
prokMSA_id:14497 AF064705 Bacillus arsenicoselenatis str. E1H
2.30.7.9.3.11300 OTU 1 seq
prokMSA_id:14503 Z48306 Bacillus vedderi str. JaH
2.30.7.9.3.11307 OTU 1 seq
prokMSA_id:14506 AB018595 Bacillus alcaliinulinus str. AM31
2.30.7.9.3.11310 OTU 1 seq
prokMSA_id:14507 X60603 Bacillus alcalophilus DSM 485
2.30.7.9.3.11312 OTU 1 seq
prokMSA_id:14508 X76449 Bacillus sp. DSM 8725
2.30.7.9.3.12552 OTU 1 seq
prokMSA_id:46071 AB043846 Bacillus sp. C-11 
2.30.7.9.3.13257 OTU 1 seq
prokMSA_id:23244 AB043852 Bacillus sp. N-4 
2.30.7.9.3.13788 OTU 1 seq
prokMSA_id:31103 AB043851 Bacillus sp. N-1 
2.30.7.9.3.13818 OTU 1 seq
prokMSA_id:29964 X92167 sp. Lake Bogoria isolate 9B1
2.30.7.9.3.13901 OTU 1 seq
prokMSA_id:23337 AF275707 Hailaer soda lake T10 
2.30.7.9.3.1462 OTU 1 seq
prokMSA_id:40983 X92161 sp. Lake Elmenteita isolate WE4
2.30.7.9.3.15006 OTU 1 seq
prokMSA_id:31334 AB043864 Bacillus sp. AM-001 
2.30.7.9.3.1515 OTU 1 seq
prokMSA_id:33780 Y18214 Desulfonosporus thiosulfogenes 
2.30.7.9.3.16417 OTU 1 seq
prokMSA_id:46652 X92165 sp. Little Lake Magadi isolate 95LM4
2.30.7.9.3.16761 OTU 1 seq
prokMSA_id:78009 AB098576 Bacillus sp. TUT1007 
2.30.7.9.3.17107 OTU 1 seq
prokMSA_id:53960 AB031212 Bacillus halodurans orf1 orf2 kbaA ybaN rrnE- rrnE-23S rrnE-
2.30.7.9.3.17118 OTU 1 seq
prokMSA_id:77491 AY167815 Bacillus gibsonii strain SAFN-015 
2.30.7.9.3.17675 OTU 1 seq
prokMSA_id:23919 X92168 sp. Lake Nakuru isolate 17N1
2.30.7.9.3.17668 OTU 1 seq
prokMSA_id:77521 AY167821 Bacillus sp. SAFN-006 
2.30.7.9.3.19188 OTU 1 seq
prokMSA_id:16919 AY032601 Bacillus sp. JMM-4 
2.30.7.9.3.19832 OTU 1 seq
prokMSA_id:24847 AJ296095 Bacillus sp. OS-5 strain OS-5
2.30.7.9.3.19862 OTU 1 seq
prokMSA_id:17639 AF275706 Hailaer soda lake T1 
2.30.7.9.3.20243 OTU 1 seq
prokMSA_id:26101 X92160 sp. Lake Bogoria isolate 64B4
2.30.7.9.3.21401 OTU 1 seq
prokMSA_id:78617 AB094471 Bacillus sp. 2216.25.2 
2.30.7.9.3.24568 OTU 5 seqs
prokMSA_id:14511 X76440 Bacillus sp. DSM 8716
prokMSA_id:14512 AF142576 Bacillus Enterogermina str. Enterogermina
prokMSA_id:22363 AB043853 Bacillus sp. O-4 
prokMSA_id:69971 AB043855 Bacillus sp. IC 
prokMSA_id:71598 AF329474 Bacillus clausii strain LMG 19610 
2.30.7.9.3.27046 OTU 2 seqs
prokMSA_id:14500 X76445 Bacillus sp. DSM 8721
prokMSA_id:70518 AB043860 Bacillus sp. S2 
2.30.7.9.3.31521 OTU 2 seqs
prokMSA_id:16790 AF275701 Hailaer soda lake F23 
prokMSA_id:29235 AB044748 Bacillus sp. KSM-K38 complete 
2.30.7.9.3.32193 OTU 2 seqs
prokMSA_id:16416 X92163 sp. Lake Natron isolate 103NT4
prokMSA_id:26833 X92164 sp. Lake Elmenteita isolate WE1
2.30.7.9.3.32356 OTU 2 seqs
prokMSA_id:45141 AB035091 Bacillus sp. KSM-S237 
prokMSA_id:73180 AB043858 Bacillus sp. 1139 
2.30.7.9.3.32558 OTU 2 seqs
prokMSA_id:14516 X76438 Bacillus sp. DSM 8714
prokMSA_id:32171 AJ431332 Bacillus sp. ikaite 27 isolate ikaite 27
2.30.7.9.3.34136 OTU 2 seqs
prokMSA_id:18610 AF218243 Bacillus sp
prokMSA_id:21885 AF227837 str. 47083 
2.30.7.9.3.34115 OTU 3 seqs
prokMSA_id:37519 AB043841 Bacillus sp. 169 
prokMSA_id:41956 AB043848 Bacillus sp. C-59-2 
prokMSA_id:42049 AB043840 Bacillus sp. 135 
2.30.7.9.3.34405 OTU 22 seqs
prokMSA_id:14493 X76442 Bacillus sp. DSM 8718
prokMSA_id:14495 AB002661 Bacillus sp. str. C-125
prokMSA_id:17467 AB047685 Bacillus sp. GTC855 
prokMSA_id:22552 AB043856 Bacillus sp. A-59 
prokMSA_id:28745 AP001509 Bacillus halodurans genomic section 3/14
prokMSA_id:36285 AB027713 Bacillus halodurans strain:AH-101
prokMSA_id:37869 AJ302709 Bacillus halodurans strain DSM 497T
prokMSA_id:38836 AB043847 Bacillus sp. C-3 
prokMSA_id:40528 AB021187 Bacillus halodurans 
prokMSA_id:42445 AY017348 Bacillus halodurans 
prokMSA_id:46768 AP001507 Bacillus halodurans genomic section 1/14
prokMSA_id:52107 AB043971 Bacillus halodurans complete 
prokMSA_id:53117 AB031215 Bacillus halodurans ygaG orf ygxA rrnH- rrnH-23S rrnH-5S trn
prokMSA_id:53545 AB031210 Bacillus halodurans dnaX yaaK recR yaaL bofA rrnB- rrnB-23S 
prokMSA_id:53774 AB031211 Bacillus halodurans lysS rrnC- trn-Ile trn-Ala rrnC-23S rrnC
prokMSA_id:54054 NC_002570 Bacillus halodurans complete genome
prokMSA_id:54430 AB013373 Bacillus halodurans C-125 23S 5S and genes and tRNA-Ala Arg 
prokMSA_id:54477 AB031213 Bacillus halodurans ydcI ydcK trn-Asn trn-Ser trn-Glu trn-Va
prokMSA_id:54543 AB031209 Bacillus halodurans orf1 orf2 - -23S -5S yaaC guaB and compl
prokMSA_id:54652 AB031214 Bacillus halodurans yvgQ rrnG- trn-lle trn-Ala rrnG-23S trn-
prokMSA_id:69133 AP001510 Bacillus halodurans genomic section 4/14
prokMSA_id:71735 AP001508 Bacillus halodurans genomic section 2/14
2.30.7.9.3.34655 OTU 7 seqs
prokMSA_id:14496 X76439 Bacillus sp. DSM 8715
prokMSA_id:20318 AB029256 Bacillus pseudofirmus complete 
prokMSA_id:24084 X92158 sp. Lake Bogoria isolate 66B4
prokMSA_id:38275 AB043845 Bacillus sp. 27-1 
prokMSA_id:46785 AB043857 Bacillus sp. 2b-2 
prokMSA_id:47686 AB043842 Bacillus sp. 8-1 
prokMSA_id:47837 AF406790 Bacillus pseudofirmus strain FTU 
2.30.7.9.3.39629 OTU 2 seqs
prokMSA_id:14504 X76448 Bacillus sp. DSM 8724
prokMSA_id:14505 X76436 Bacillus alcalophilus DSM 485
2.30.7.9.3.39823 OTU 2 seqs
prokMSA_id:14513 X76441 Bacillus sp. DSM 8717
prokMSA_id:37620 AB043843 Bacillus sp. 17-1 
2.30.7.9.3.41473 OTU 2 seqs
prokMSA_id:41599 AB043850 Bacillus sp. K12-5 
prokMSA_id:70502 AJ507321 Bacillus sp. NER strain NER
2.30.7.9.3.42774 OTU 2 seqs
prokMSA_id:56525 AF541966 Bacillus hwajinpoensis 
prokMSA_id:59480 AF541965 Bacillus baekryungensis 
2.30.7.9.3.473 OTU 1 seq
prokMSA_id:71532 AJ315075 Bacillus decolorationis 
2.30.7.9.3.6572 OTU 1 seq
prokMSA_id:44055 X92162 sp. Lake Elmenteita isolate 3E1
2.30.7.9.3.663 OTU 1 seq
prokMSA_id:40868 AB043839 Bacillus sp. 13 
2.30.7.9.3.7495 OTU 1 seq
prokMSA_id:36300 X92166 sp. Lake Natron isolate 105NT4
2.30.7.10 B.MEGATERIUM_GROUP 291 seqs
2.30.7.10.1 B.STEAROTHERMOPHILUS_SUBGROUP 102 seqs
2.30.7.10.1.10666 OTU 1 seq
prokMSA_id:74615 AY044054 Geobacillus stearothermophilus strain 28 complete 
2.30.7.10.1.11363 OTU 1 seq
prokMSA_id:14520 AJ010478 Bacillus sp. str. k-1
2.30.7.10.1.11392 OTU 1 seq
prokMSA_id:14531 AJ005759 Bacillus stearothermophilus str. NUB3621
2.30.7.10.1.11423 OTU 1 seq
prokMSA_id:14540 AJ242495 Thermicanus aegyptius str. ET-5b
2.30.7.10.1.11424 OTU 1 seq
prokMSA_id:14541 AB012934 Bacillus sp. str. MH-1
2.30.7.10.1.11468 OTU 1 seq
prokMSA_id:14558 U40230 unnamed organism
2.30.7.10.1.11469 OTU 1 seq
prokMSA_id:14559 AB002648 str. HTA1422
2.30.7.10.1.11509 OTU 1 seq
prokMSA_id:14569 U62623 Bacillus sp. str. ICPS10
2.30.7.10.1.21111 OTU 1 seq
prokMSA_id:26206 AF138736 Thermoactinomyces putidus KCTC 3666 complete 
2.30.7.10.1.21087 OTU 1 seq
prokMSA_id:41281 AJ251778 Thermoactinomyces sanguinis 
2.30.7.10.1.258 OTU 1 seq
prokMSA_id:78768 AY191842 Geobacillus sp. YMTC1049 
2.30.7.10.1.25842 OTU 4 seqs
prokMSA_id:14542 Z26930 Bacillus pallidus DSM 3670
prokMSA_id:14566 Z26929 Bacillus sp. DSM 2349
prokMSA_id:19352 AB040122 Bacillus sp. B-3 
prokMSA_id:58674 AB089218 Bacillus sp. F2 
2.30.7.10.1.26004 OTU 2 seqs
prokMSA_id:14557 AF113512 Bacillus TA2.A1 str. TA2.A1
prokMSA_id:33289 AB043863 Bacillus sp. TX3 
2.30.7.10.1.26120 OTU 2 seqs
prokMSA_id:14560 AB002649 str. HTA1417
prokMSA_id:14563 AB002652 str. HTA1415
2.30.7.10.1.30506 OTU 3 seqs
prokMSA_id:27372 AJ429137 Bacillus sp. S1b-3 strain S1b-3
prokMSA_id:71319 AJ271738 Bacillus thermoterrestris strain TS2A
prokMSA_id:74137 AJ271739 Bacillus thermoterrestris strain TS24A
2.30.7.10.1.37517 OTU 28 seqs
prokMSA_id:14528 Z26925 Bacillus caldovelox DSM 411
prokMSA_id:14543 Z26923 Bacillus thermoleovorans DSM 5366
prokMSA_id:14544 AB034902 Bacillus thermoleovorans str. H41
prokMSA_id:14545 AB034836 Bacillus thermoleovorans str. B23
prokMSA_id:14549 AB002646 str. HTA462
prokMSA_id:14550 AB002647 str. HTA1418
prokMSA_id:14551 Z26924 Bacillus caldolyticus DSM 405
prokMSA_id:14555 Z26926 Bacillus thermocatenulatus DSM 730
prokMSA_id:23251 AF276305 Geobacillus uzenensis strain X 
prokMSA_id:23576 AJ293805 Bacillus vulcani strain 3S-1
prokMSA_id:25595 AB021196 Bacillus stearothermophilus 
prokMSA_id:28593 AY074879 Geobacillus sacchari 
prokMSA_id:34397 AF465646 Bacillus sp. YNPRH2P-2 
prokMSA_id:35138 AY062017 Bacillus sp. G2 
prokMSA_id:39078 AB051200 Bacillus sp. S 
prokMSA_id:42405 AJ294817 Bacillus stearothermophilus strain DSM 22T
prokMSA_id:57566 AY166603 Geobacillus sp. T1 complete 
prokMSA_id:58669 AB089224 Bacillus sp. G62 
prokMSA_id:58682 AB089210 Bacillus sp. B4 
prokMSA_id:60458 AY044055 Geobacillus lituanicus complete 
prokMSA_id:60459 AY044052 Geobacillus stearothermophilus strain 3 complete 
prokMSA_id:60460 AY044053 Geobacillus stearothermophilus strain 32A complete 
prokMSA_id:70432 AJ489330 Geobacillus thermoleovorans isolate I80
prokMSA_id:70679 AJ489328 Geobacillus thermoleovorans isolate T70
prokMSA_id:71742 AJ489329 Geobacillus thermoleovorans isolate T80
prokMSA_id:73016 AF385083 Bacillus thermoleovorans complete 
prokMSA_id:73417 AF276304 Geobacillus uzenensis strain U 
prokMSA_id:78662 AJ536599 Bacillus thermoleovorans isolate CCR11
2.30.7.10.1.3777 OTU 1 seq
prokMSA_id:34691 AF138733 Thermoactinomyces dichotomicus KCTC 3667 complete 
2.30.7.10.1.39260 OTU 4 seqs
prokMSA_id:64299 AF517773 Hyperthermophilic OGL-7B 
prokMSA_id:78614 AB088361 Thermoactinomyces sp. 700375 
prokMSA_id:78838 AB088363 Thermoactinomyces sp. C0170 
prokMSA_id:78879 AB088362 Thermoactinomyces sp. 500275 
2.30.7.10.1.40091 OTU 12 seqs
prokMSA_id:14533 Z26927 Bacillus denitrificans DSM 466
prokMSA_id:14534 AB028234 Bacillus thermodenitrificans str. OHT-1
prokMSA_id:14536 AF114424 Bacillus thermodenitrificans str. NS
prokMSA_id:14538 AF114426 Bacillus thermodenitrificans str. T4
prokMSA_id:14539 AJ005760 Bacillus stearothermophilus str. K1041
prokMSA_id:14548 AB002645 str. HTA426
prokMSA_id:14564 M77488 Bacillus thermoleovorans ATCC 43513
prokMSA_id:17121 AF267509 Bacillus sp. Isopa9 
prokMSA_id:26066 AF276307 Geobacillus subterraneus strain K 
prokMSA_id:45180 AF411064 Geobacillus anatolicus strain SB 
prokMSA_id:46206 AF276306 Geobacillus subterraneus strain 34 
prokMSA_id:67723 AB063312 Bacillus sp. TS-3 
2.30.7.10.1.42445 OTU 19 seqs
prokMSA_id:56614 AB089233 Bacillus sp. IZ3 
prokMSA_id:58658 AB089235 Bacillus sp. IZ5 
prokMSA_id:58660 AB089234 Bacillus sp. IZ4 
prokMSA_id:58661 AB089232 Bacillus sp. H6 
prokMSA_id:58662 AB089228 Bacillus sp. H2 
prokMSA_id:58663 AB089230 Bacillus sp. H4 
prokMSA_id:58664 AB089231 Bacillus sp. H5 
prokMSA_id:58665 AB089229 Bacillus sp. H3 
prokMSA_id:58666 AB089227 Bacillus sp. H1 
prokMSA_id:58667 AB089226 Bacillus sp. G8 
prokMSA_id:58668 AB089225 Bacillus sp. G7 
prokMSA_id:58670 AB089223 Bacillus sp. G5 
prokMSA_id:58671 AB089221 Bacillus sp. G3 
prokMSA_id:58672 AB089220 Bacillus sp. G2 
prokMSA_id:58673 AB089219 Bacillus sp. G1 
prokMSA_id:58675 AB089216 Bacillus sp. E3 
prokMSA_id:58676 AB089217 Bacillus sp. F1 
prokMSA_id:58678 AB089214 Bacillus sp. E1 
prokMSA_id:74568 AB089222 Bacillus sp. G4 
2.30.7.10.1.42427 OTU 15 seqs
prokMSA_id:14552 X57309 Bacillus stearothermophilus str. T10
prokMSA_id:14568 Z26922 Bacillus caldotenax DSM 406
prokMSA_id:18188 AF228765 Bacillus sp. Cimanggu 
prokMSA_id:40665 AF228764 Bacillus sp. Papandayan 
prokMSA_id:55616 AB089237 Bacillus sp. A3 
prokMSA_id:56299 AB089208 Bacillus sp. B2 
prokMSA_id:58655 AB089240 Bacillus sp. D1 
prokMSA_id:58657 AB089238 Bacillus sp. VA2 
prokMSA_id:58659 AB089236 Bacillus sp. V0 
prokMSA_id:58677 AB089215 Bacillus sp. E2 
prokMSA_id:58679 AB089212 Bacillus sp. B6 
prokMSA_id:58680 AB089213 Bacillus sp. B7 
prokMSA_id:58681 AB089211 Bacillus sp. B5 
prokMSA_id:58685 AB089207 Bacillus sp. B1 
prokMSA_id:58687 AB089209 Bacillus sp. B3 
2.30.7.10.1.6356 OTU 1 seq
prokMSA_id:27737 AF267508 Bacillus sp. Isopa5 
2.30.7.10.2 B.SMITHII_SUBGROUP 1 seq
2.30.7.10.2.15935 OTU 1 seq
prokMSA_id:76677 AJ504797 Bacillus eolicus strain 4-1T
2.30.7.10.3 B.METHANOLICUS_SUBGROUP 5 seqs
2.30.7.10.3.11537 OTU 1 seq
prokMSA_id:14576 AB009200 clone RFN44
2.30.7.10.3.26858 OTU 2 seqs
prokMSA_id:14575 X64465 Bacillus methanolicus str. C1 NCIMB 13114
prokMSA_id:14578 S42879 Bacillus methanolicus str. C1 NCIMB 13114
2.30.7.10.3.26859 OTU 2 seqs
prokMSA_id:14577 U20384 Bacillus infernus str. TH-22 =SMCC/W 478
prokMSA_id:14581 U20385 Bacillus infernus str. TH-23 =SMCC/W 479
2.30.7.10.4 B.SPOROTHERMODURANS_SUBGROUP 24 seqs
2.30.7.10.4.11476 OTU 1 seq
prokMSA_id:51860 AF252326 pPD15 
2.30.7.10.4.11597 OTU 1 seq
prokMSA_id:14594 L27478 Bacillus thermoamylovorans str. DKP CNCM I-1378
2.30.7.10.4.13 OTU 1 seq
prokMSA_id:33595 AB034721 compost 4-75 
2.30.7.10.4.17890 OTU 1 seq
prokMSA_id:76944 AJ519637 Clostridium sp. clone Sh765B-AG-44
2.30.7.10.4.17911 OTU 1 seq
prokMSA_id:16783 AB021182 Bacillus carboniphilus 
2.30.7.10.4.18039 OTU 1 seq
prokMSA_id:69789 AJ250318 LMG 18435 strain LMG 18435
2.30.7.10.4.19427 OTU 1 seq
prokMSA_id:40429 AB034720 compost 5-33 
2.30.7.10.4.25209 OTU 5 seqs
prokMSA_id:14596 AF071858 Bacillus 115898 str. 115898
prokMSA_id:16862 AB066342 Bacillus sp. TAT105 
prokMSA_id:25041 AB066341 Bacillus sp. TAT112 
prokMSA_id:43776 AB034705 compost 4-11 
prokMSA_id:47302 AB034716 compost 4-74 
2.30.7.10.4.26895 OTU 2 seqs
prokMSA_id:14585 U49078 Bacillus sporothermodurans str. M215 DSM 10599
prokMSA_id:14587 U49079 Bacillus sporothermodurans str. M215 DSM 10599
2.30.7.10.4.301 OTU 1 seq
prokMSA_id:17956 AB020192 Bacillus sp. strain TGS137
2.30.7.10.4.32076 OTU 2 seqs
prokMSA_id:14588 AB030930 Bacillus IPso1 str. IPso1
prokMSA_id:14589 AB030931 Bacillus IPso2 str. IPso2
2.30.7.10.4.34100 OTU 4 seqs
prokMSA_id:34699 AF252325 pPD14 
prokMSA_id:35194 AF252317 pPD4 
prokMSA_id:36181 AF252324 pPD13 
prokMSA_id:45759 AF252323 pPD12 
2.30.7.10.4.4546 OTU 1 seq
prokMSA_id:34734 AF326360 Bacillus sp. MB-11 
2.30.7.10.4.7172 OTU 1 seq
prokMSA_id:21214 AB034717 compost 5-10 
2.30.7.10.4.9519 OTU 1 seq
prokMSA_id:28732 AB034715 compost 4-57 
2.30.7.10.5 VR.PANTOTHENTICUS_SUBGROUP 50 seqs
2.30.7.10.5.1128 OTU 1 seq
prokMSA_id:42141 AF326365 Bacillus sp. MB-9 
2.30.7.10.5.11725 OTU 1 seq
prokMSA_id:59716 AP004595 Oceanobacillus iheyensis genomic section 3/13
2.30.7.10.5.12011 OTU 1 seq
prokMSA_id:14603 X82436 Gracilibacillus dipsosauri str. DD1
2.30.7.10.5.12012 OTU 1 seq
prokMSA_id:14604 AF036922 Gracilibacillus halotolerans str. NN
2.30.7.10.5.12021 OTU 1 seq
prokMSA_id:14609 AJ012667 Virgibacillus proomii LMG 12370
2.30.7.10.5.12045 OTU 1 seq
prokMSA_id:14615 X90834 Marinococcus albus DSM 20748
2.30.7.10.5.12090 OTU 1 seq
prokMSA_id:21848 AJ309562 Bacillus nitritophilus strain IB-256
2.30.7.10.5.12820 OTU 1 seq
prokMSA_id:44837 AB034706 compost 4-13 
2.30.7.10.5.1490 OTU 1 seq
prokMSA_id:40994 AB034713 compost 4-49 
2.30.7.10.5.15452 OTU 1 seq
prokMSA_id:22996 AF275698 Hailaer soda lake F10 
2.30.7.10.5.16010 OTU 1 seq
prokMSA_id:39395 AB021186 Bacillus halodenitrificans 
2.30.7.10.5.16297 OTU 1 seq
prokMSA_id:23741 AJ391200 marine AS-39 
2.30.7.10.5.18126 OTU 1 seq
prokMSA_id:63140 AY121439 Salibacillus sp. YIM-kkny16 
2.30.7.10.5.18130 OTU 1 seq
prokMSA_id:63145 AY121437 Gracilibacillus sp. YIM-kkny13 
2.30.7.10.5.18132 OTU 1 seq
prokMSA_id:63146 AY121438 Halobacillus sp. YIM-kkny15 
2.30.7.10.5.18146 OTU 1 seq
prokMSA_id:63156 AY121432 Amphibacillus sp. YIM-kkny6 
2.30.7.10.5.18147 OTU 1 seq
prokMSA_id:63157 AY121430 Salibacillus sp. YIM-kkny3 
2.30.7.10.5.18622 OTU 1 seq
prokMSA_id:39733 AJ291752 Halobacillus sp. K3-1 strain K3-1
2.30.7.10.5.19207 OTU 1 seq
prokMSA_id:16928 AJ238042 Filobacillus milensis 
2.30.7.10.5.19233 OTU 1 seq
prokMSA_id:47685 AJ309561 Bacillus litoralis strain IB-B4
2.30.7.10.5.20475 OTU 1 seq
prokMSA_id:62835 AJ496807 Amphibacillus xylanus strain DSM 6626
2.30.7.10.5.21887 OTU 1 seq
prokMSA_id:56418 AB087828 Paraliobacillus ryukyuensis 
2.30.7.10.5.25618 OTU 2 seqs
prokMSA_id:14608 D16275 Virgibacillus pantothenticus IAM 11061
prokMSA_id:42215 AB039331 Virgibacillus pantothenticus strain:M1-4
2.30.7.10.5.25718 OTU 2 seqs
prokMSA_id:14616 X62174 Sporosarcina ureae
prokMSA_id:14617 X62174 Halobacillus halophilus NCIMB 2269
2.30.7.10.5.30692 OTU 2 seqs
prokMSA_id:41371 AB021188 Bacillus halophilus 
prokMSA_id:42873 AJ243920 Bacillus halophilus strain DSM 4771T
2.30.7.10.5.31786 OTU 2 seqs
prokMSA_id:14614 X94558 Halobacillus litoralis str. SL-4 DSM 10405
prokMSA_id:44334 AJ310149 Halobacillus trueperi strain DSM 10404T
2.30.7.10.5.32737 OTU 2 seqs
prokMSA_id:14602 X72876 Bacillus sp. str. WN13 DSM 5271
prokMSA_id:26016 AJ238041 Bacillus haloalkaliphilus 
2.30.7.10.5.32762 OTU 2 seqs
prokMSA_id:14612 AJ009793 Bacillus marismortui str. 123
prokMSA_id:73885 AF166093 Bacillus permians complete 
2.30.7.10.5.32921 OTU 2 seqs
prokMSA_id:46172 AJ315056 Virgibacillus necropolis 
prokMSA_id:70340 T AJ316302 Virgibacillus carmonensis strain LMG 20964
2.30.7.10.5.34411 OTU 5 seqs
prokMSA_id:14611 AB010863 firmicute strain HTE831 
prokMSA_id:59386 NC_004193 Oceanobacillus iheyensis complete genome
prokMSA_id:59715 AP004600 Oceanobacillus iheyensis genomic section 8/13
prokMSA_id:59718 AP004596 Oceanobacillus iheyensis genomic section 4/13
prokMSA_id:59720 AP004593 Oceanobacillus iheyensis genomic section 1/13
2.30.7.10.5.3958 OTU 1 seq
prokMSA_id:19694 AY057394 Lentibacillus salicampi 
2.30.7.10.5.41762 OTU 2 seqs
prokMSA_id:71975 AJ291754 Halobacillus sp. I7 strain I7
prokMSA_id:72101 AJ291753 Halobacillus sp. I3 strain I3
2.30.7.10.5.42838 OTU 2 seqs
prokMSA_id:63158 AY121429 Halobacillus sp. YIM-kkny2 
prokMSA_id:80237 AY190534 Halobacillus locisalis 
2.30.7.10.5.6145 OTU 1 seq
prokMSA_id:73499 AF295302 Bacillus endophyticus 
2.30.7.10.5.6287 OTU 1 seq
prokMSA_id:34922 AJ309559 Bacillus litoralis strain IB-B8
2.30.7.10.5.7619 OTU 1 seq
prokMSA_id:66422 AJ486874 Halobacillus karajiensis strain DSM 14948
2.30.7.10.5.9487 OTU 1 seq
prokMSA_id:66685 AF500003 Halobacillus salinus strain HSL-3 
2.30.7.10.6 B.BADIUS_SUBGROUP 9 seqs
2.30.7.10.6.12052 OTU 1 seq
prokMSA_id:14618 X62178 Bacillus aminovorans NCIMB 8292
2.30.7.10.6.12076 OTU 1 seq
prokMSA_id:14620 X77790 Bacillus badius ATCC 14574
2.30.7.10.6.12077 OTU 1 seq
prokMSA_id:14621 AF071857 Bacillus '112442 JS2' str. 112442 JS2
2.30.7.10.6.13996 OTU 1 seq
prokMSA_id:52810 AF423288 soil clone 720-1 
2.30.7.10.6.15517 OTU 1 seq
prokMSA_id:68753 AF479347 Glacial ice G200-N5 
2.30.7.10.6.16971 OTU 1 seq
prokMSA_id:77436 AY167810 Bacillus sp. SAFN-020 
2.30.7.10.6.17800 OTU 1 seq
prokMSA_id:77568 AY167801 Bacillus sp. SAFN-028 
2.30.7.10.6.18361 OTU 1 seq
prokMSA_id:77601 AB098575 Bacillus badius 
2.30.7.10.6.5832 OTU 1 seq
prokMSA_id:73402 AF227844 Bacillus sp. 76992 
2.30.7.10.7 B.LENTUS_SUBGROUP 11 seqs
2.30.7.10.7.12081 OTU 1 seq
prokMSA_id:14624 Y14693 Bacillus benzoevorans str. YEO5
2.30.7.10.7.15608 OTU 1 seq
prokMSA_id:24211 AF286485 Bacillus sp. VAN26 
2.30.7.10.7.15687 OTU 1 seq
prokMSA_id:77233 AJ535638 Bacillus galactosidasius strain LMG 17892T
2.30.7.10.7.18000 OTU 1 seq
prokMSA_id:39686 AF463535 Bacillus sp. HT-1 
2.30.7.10.7.2329 OTU 1 seq
prokMSA_id:49517 AB020194 Bacillus sp. strain TGS337
2.30.7.10.7.26602 OTU 3 seqs
prokMSA_id:32275 AB066346 Bacillus sp. TH64 
prokMSA_id:40353 AB066337 Bacillus sp. TP81 
prokMSA_id:71600 AB066336 Bacillus sp. TP50 
2.30.7.10.7.32803 OTU 2 seqs
prokMSA_id:14623 D16272 Bacillus lentus IAM 12466
prokMSA_id:47718 AB021189 Bacillus lentus 
2.30.7.10.7.442 OTU 1 seq
prokMSA_id:71520 AY148429 Bacillus hackensackii complete 
2.30.7.10.8 B.PSEUDOMEGATERIUM_SUBGROUP 24 seqs
2.30.7.10.8.12083 OTU 1 seq
prokMSA_id:14626 X77791 Bacillus pseudomegaterium ATCC 49866
2.30.7.10.8.12085 OTU 1 seq
prokMSA_id:14628 AJ001222 clone DA154
2.30.7.10.8.12132 OTU 1 seq
prokMSA_id:14641 AJ000981 clone DA036
2.30.7.10.8.12128 OTU 1 seq
prokMSA_id:14640 AJ000983 DA134 
2.30.7.10.8.12135 OTU 1 seq
prokMSA_id:14642 AJ000982 DA066 
2.30.7.10.8.13829 OTU 1 seq
prokMSA_id:29974 AJ315066 Bacillus sp. 19498 
2.30.7.10.8.14108 OTU 1 seq
prokMSA_id:46286 X99967 DA001 mark03 
2.30.7.10.8.17116 OTU 1 seq
prokMSA_id:77490 AY167817 Bacillus niacini strain SAFN-011 
2.30.7.10.8.17688 OTU 1 seq
prokMSA_id:54667 AF423249 soil clone 335-1 
2.30.7.10.8.18127 OTU 1 seq
prokMSA_id:63143 AY121435 Amphibacillus sp. YIM-kkny10 
2.30.7.10.8.18144 OTU 1 seq
prokMSA_id:63154 AY121431 YIM-kkny4 
2.30.7.10.8.19042 OTU 1 seq
prokMSA_id:17518 AF252320 pPD7 
2.30.7.10.8.20522 OTU 1 seq
prokMSA_id:48416 AJ229200 from anoxic bulk soil clone BSV45
2.30.7.10.8.21035 OTU 1 seq
prokMSA_id:40603 AJ229215 from anoxic bulk soil clone BSV71
2.30.7.10.8.3797 OTU 1 seq
prokMSA_id:27496 AJ229179 from anoxic bulk soil clone BSV05
2.30.7.10.8.37967 OTU 3 seqs
prokMSA_id:24853 AF423209 soil clone 1104-1 
prokMSA_id:34585 AF423214 soil clone 1200-1 
prokMSA_id:43113 AJ229201 from anoxic bulk soil clone BSV46
2.30.7.10.8.40821 OTU 2 seqs
prokMSA_id:14627 AJ222833 str. 5-28
prokMSA_id:72679 AF519468 Bacillus senegalensis strain RS8 
2.30.7.10.8.42169 OTU 3 seqs
prokMSA_id:81120 AJ542514 Bacillus soli strain LMG 21839
prokMSA_id:82239 AJ542513 Bacillus soli strain LMG 21838
prokMSA_id:82298 AJ542515 Bacillus soli strain LMG 21840
2.30.7.10.8.7210 OTU 1 seq
prokMSA_id:81403 AJ542512 Bacillus novalis strain LMG 21837
2.30.7.10.9 B.FIRMUS_SUBGROUP 23 seqs
2.30.7.10.9.12144 OTU 1 seq
prokMSA_id:14647 D16268 Bacillus firmus IAM 12464
2.30.7.10.9.12142 OTU 1 seq
prokMSA_id:14646 X60616 Bacillus firmus NCIMB 9366
2.30.7.10.9.15619 OTU 1 seq
prokMSA_id:17006 AF234863 Bacillus sp. FO-092 
2.30.7.10.9.15661 OTU 1 seq
prokMSA_id:24269 AF423299 soil clone 911-1 
2.30.7.10.9.18402 OTU 1 seq
prokMSA_id:78276 AJ491843 Bacillus firmus strain D1
2.30.7.10.9.18595 OTU 1 seq
prokMSA_id:46942 AB049939 Thermoactinomyces kribbensis 
2.30.7.10.9.26719 OTU 2 seqs
prokMSA_id:14648 AJ237708 Bacillus marinus DSM 1297
prokMSA_id:23280 AB021190 Bacillus marinus 
2.30.7.10.9.30669 OTU 2 seqs
prokMSA_id:22904 AB034709 compost 4-21 
prokMSA_id:42097 AB034708 compost 4-20 
2.30.7.10.9.37634 OTU 6 seqs
prokMSA_id:21215 AF326366 Bacillus sp. PL-12 
prokMSA_id:27557 AF326363 Bacillus sp. MB-5 
prokMSA_id:28047 AF326367 Bacillus sp. PL-16 
prokMSA_id:28181 AF221061 Bacillus sp. YKJ-10 
prokMSA_id:67863 AY082367 Bacillus sp. clone DGG2 
prokMSA_id:74232 AF326371 Bacillus sp. PL-7 
2.30.7.10.9.41327 OTU 2 seqs
prokMSA_id:14649 D88778 Bacillus sp. str. DSK25
prokMSA_id:28627 AF281158 Bacillus kangii 
2.30.7.10.9.41347 OTU 2 seqs
prokMSA_id:14654 AF154081 clone BPC060
prokMSA_id:14655 AF154082 clone BPC094
2.30.7.10.9.42656 OTU 2 seqs
prokMSA_id:56298 AF530155 Marinibacillus marinus 
prokMSA_id:79732 AY190535 Marinibacillus campisalis 
2.30.7.10.9.716 OTU 1 seq
prokMSA_id:26443 AJ229207 from anoxic bulk soil clone BSV55
2.30.7.10.10 B.CIRCULANS_SUBGROUP 3 seqs
2.30.7.10.10.12169 OTU 1 seq
prokMSA_id:14659 X60611 Bacillus benzoevorans NCIMB 12555
2.30.7.10.10.17732 OTU 1 seq
prokMSA_id:77545 AY167808 Bacillus benzoevorans strain SAFN-024 
2.30.7.10.10.18648 OTU 1 seq
prokMSA_id:46961 AY043084 Bacillus circulans 
2.30.7.10.11 B.SIMPLEX_SUBGROUP 5 seqs
2.30.7.10.11.12187 OTU 1 seq
prokMSA_id:14669 Y07574 DA032 
2.30.7.10.11.12512 OTU 1 seq
prokMSA_id:52613 AB021195 Bacillus psychrosaccharolyticus 
2.30.7.10.11.16377 OTU 1 seq
prokMSA_id:77384 AY167822 Bacillus macroides strain SAFN-005 
2.30.7.10.11.17745 OTU 1 seq
prokMSA_id:46809 AJ316309 Bacillus sp. LMG 20238 strain LMG 20238
2.30.7.10.11.20196 OTU 1 seq
prokMSA_id:71264 AY030324 Bacillus macroides strain KL-009 
2.30.7.10.12 B.MEGATERIUM_SUBGROUP 27 seqs
2.30.7.10.12.12213 OTU 1 seq
prokMSA_id:14678 D78478 Bacillus simplex DSM 1321
2.30.7.10.12.16919 OTU 1 seq
prokMSA_id:77415 AY167813 Bacillus megaterium strain SAFN-017 
2.30.7.10.12.18794 OTU 1 seq
prokMSA_id:56000 AF513963 Bacillaceae clone PH-B53N 
2.30.7.10.12.40354 OTU 20 seqs
prokMSA_id:14673 D16273 Bacillus megaterium IAM 13418
prokMSA_id:17758 AB066344 Bacillus sp. No.51 
prokMSA_id:20365 AB066347 Bacillus sp. No.49 
prokMSA_id:22479 AY030338 Bacillus megaterium strain KL-197 
prokMSA_id:23021 AB066338 Bacillus sp. No.61 
prokMSA_id:23952 AF423258 soil clone 408-1 
prokMSA_id:28208 AJ315065 Bacillus sp. 19497 
prokMSA_id:31967 AF427153 Bacillus sp. PAR4 
prokMSA_id:33074 AY030336 Bacillus megaterium strain KL-181 
prokMSA_id:36437 AB066339 Bacillus sp. No.44 
prokMSA_id:36736 AB066345 Bacillus sp. No.54 
prokMSA_id:47700 AF323260 Gram positive B4P-1B 
prokMSA_id:48235 AF323264 Gram positive W6G-1 
prokMSA_id:60442 AY131222 Bacillus sp. Fa29 
prokMSA_id:68766 AF479335 Glacial ice G500K-18 
prokMSA_id:70648 AF423213 soil clone 1175-1 
prokMSA_id:74302 AJ316310 Bacillus sp. LMG 20240 strain LMG 20240
prokMSA_id:78046 AJ491841 Bacillus megaterium strain C1
prokMSA_id:81504 NC_004604 Bacillus megaterium plasmid pBM400 complete 
prokMSA_id:81816 AF142677 Bacillus megaterium plasmid pBM400 complete 
2.30.7.10.12.41470 OTU 2 seqs
prokMSA_id:29536 AF217809 Bacillus sp. KYJ963 
prokMSA_id:52825 AB021185 Bacillus flexus 
2.30.7.10.12.42049 OTU 2 seqs
prokMSA_id:77353 AY167803 Bacillus megaterium strain SAFN-040 
prokMSA_id:77354 AY167824 Bacillus megaterium strain SAFN-002 
2.30.7.10.99 VARIOUS 7 seqs
2.30.7.10.99.29082 OTU 5 seqs
prokMSA_id:28572 AF326364 Bacillus sp. MB-7 
prokMSA_id:28827 AF326362 Bacillus sp. MB-3 
prokMSA_id:35899 AF326359 Bacillus sp. MB-1 
prokMSA_id:39597 AJ276808 Virgibacillus picturae strain LMG-19416
prokMSA_id:70179 AJ316297 Virgibacillus picturae strain LMG 20959
2.30.7.10.99.42368 OTU 2 seqs
prokMSA_id:24811 AF423263 soil clone 432-1 
prokMSA_id:71698 AF547209 Bacillus acidogenesis 
2.30.7.11 B.SUBTILIS_GROUP 218 seqs
2.30.7.11.1 B.COHNII_SUBGROUP 16 seqs
2.30.7.11.1.10322 OTU 1 seq
prokMSA_id:30044 AF423230 soil clone 1448-1 
2.30.7.11.1.10504 OTU 1 seq
prokMSA_id:75224 AJ519635 Clostridium sp. clone Sh765B-TzT-27
2.30.7.11.1.12243 OTU 1 seq
prokMSA_id:14684 AB002642 str. HTA437
2.30.7.11.1.12237 OTU 1 seq
prokMSA_id:14681 Y07584 clone DA026
2.30.7.11.1.1345 OTU 1 seq
prokMSA_id:41580 AB049195 Bacillus sp. NAF001 
2.30.7.11.1.15428 OTU 1 seq
prokMSA_id:39292 AF275705 Hailaer soda lake F6 
2.30.7.11.1.18684 OTU 1 seq
prokMSA_id:71049 AF414443 Bacillus sp. YY complete 
2.30.7.11.1.19554 OTU 1 seq
prokMSA_id:26043 AB021193 Bacillus naganoensis 
2.30.7.11.1.21640 OTU 1 seq
prokMSA_id:47996 AY030333 Bacillus sp. KL-152 
2.30.7.11.1.2610 OTU 1 seq
prokMSA_id:20088 AJ316317 Bacillus sp. LMG 20243 strain LMG 20243
2.30.7.11.1.41195 OTU 6 seqs
prokMSA_id:14679 X76447 Bacillus sp. DSM 8723
prokMSA_id:31425 AB043862 Bacillus sp. KX6 
prokMSA_id:41217 AB055093 Bacillus sp. KSM-KP43 
prokMSA_id:42189 AB043865 Bacillus horikoshii 
prokMSA_id:45974 AB055097 Bacillus sp. NCIB12289 
prokMSA_id:68751 AF479350 Glacial ice G200-T16 
2.30.7.11.2 EXG.ACETYLICUM_SUBGROUP 12 seqs
2.30.7.11.2.12269 OTU 1 seq
prokMSA_id:14694 X86600 Bacillus sp. str. S2-97
2.30.7.11.2.12267 OTU 1 seq
prokMSA_id:14692 AB015558 str. BD4-8
2.30.7.11.2.21274 OTU 1 seq
prokMSA_id:49147 AF268997 SBR2004 
2.30.7.11.2.21450 OTU 1 seq
prokMSA_id:62984 AF526924 Exiguobacterium sp. clone T6-7 rrn 
2.30.7.11.2.26437 OTU 2 seqs
prokMSA_id:40417 AF227839 str. 61610 
prokMSA_id:48885 AF275715 Hailaer soda lake Z8 
2.30.7.11.2.33019 OTU 3 seqs
prokMSA_id:14687 D55730 Exiguobacterium acetylicum
prokMSA_id:14688 X70313 Exiguobacterium acetylicum NCIMB 9889
prokMSA_id:68746 AF479360 Glacial ice SB12K-2-2 
2.30.7.11.2.32986 OTU 2 seqs
prokMSA_id:32124 AJ297437 Exiguobacterium aff. acetylicum C/C-aer/b 
prokMSA_id:72912 AJ344151 Exiguobacterium undae strain L2
2.30.7.11.2.5638 OTU 1 seq
prokMSA_id:81209 AY205564 Exiguobacterium sp. BTAH1 
2.30.7.11.4 B.PUMILUS_SUBGROUP 23 seqs
2.30.7.11.4.19889 OTU 1 seq
prokMSA_id:48390 AF286481 Bacillus sp. VAN13 
2.30.7.11.4.41162 OTU 3 seqs
prokMSA_id:18224 AF234856 Bacillus pumilus strain FO-038 
prokMSA_id:41068 AF234854 Bacillus pumilus strain FO-036b 
prokMSA_id:49034 AF234851 Bacillus pumilus strain FO-033 
2.30.7.11.4.41615 OTU 6 seqs
prokMSA_id:14700 D55731 Bacillus sp. IFO 12605
prokMSA_id:14702 AB020208 Bacillus pumilus str. OM-F6
prokMSA_id:14706 AF142575 Bacillus Biosubtyl str. Biosubtyl
prokMSA_id:19779 AY030327 Bacillus pumilus strain KL-052 
prokMSA_id:23057 AF275714 Hailaer soda lake Z6 
prokMSA_id:39910 AJ315067 Bacillus sp. 19499 
2.30.7.11.4.41747 OTU 13 seqs
prokMSA_id:17740 AF447806 Bacillus pumilus A586 
prokMSA_id:18698 AB048252 Bacillus pumilus complete sequense strain:M1-9-1
prokMSA_id:47807 AF286483 Bacillus sp. VAN22 
prokMSA_id:55661 AJ494726 Bacillus pumilus isolate EI-24-8
prokMSA_id:60382 AF513457 Bacillaceae LA28 
prokMSA_id:63739 AJ494734 Bacillus pumilus isolate EI-44-7
prokMSA_id:63740 AJ494732 Bacillus pumilus isolate EI-31-12
prokMSA_id:63741 AJ494731 Bacillus pumilus isolate EI-26-8
prokMSA_id:63742 AJ494730 Bacillus pumilus isolate EI-26-7
prokMSA_id:63743 AJ494728 Bacillus pumilus isolate EI-25-8
prokMSA_id:63747 AJ494727 Bacillus pumilus isolate EI-24-10
prokMSA_id:64988 AY112667 Bacillus pumilus 
prokMSA_id:78259 AB098578 Bacillus pumilus 
2.30.7.11.5 B.SUBTILIS_SUBGROUP 130 seqs
2.30.7.11.5.11633 OTU 1 seq
prokMSA_id:37471 AJ315058 Bacillus sp. 19490 
2.30.7.11.5.12853 OTU 1 seq
prokMSA_id:14757 AF058767 Bacillus subtilis str. A405
2.30.7.11.5.13247 OTU 1 seq
prokMSA_id:46107 AB020200 Bacillus sp. strain TGS950
2.30.7.11.5.14515 OTU 1 seq
prokMSA_id:46318 AB020195 Bacillus sp. strain TGS437
2.30.7.11.5.14973 OTU 1 seq
prokMSA_id:68699 AF489591 Bacillus amyloliquefaciens strain CMB01 
2.30.7.11.5.16231 OTU 1 seq
prokMSA_id:77320 AY167806 Bacillus licheniformis strain SAFN-031 
2.30.7.11.5.16463 OTU 1 seq
prokMSA_id:39451 AF234845 Bacillus licheniformis strain FO-022a 
2.30.7.11.5.34788 OTU 8 seqs
prokMSA_id:23159 AF326368 Bacillus sp. PL-21 
prokMSA_id:34421 AF326370 Bacillus sp. PL-30 
prokMSA_id:50746 AF286482 Bacillus sp. VAN14 
prokMSA_id:68788 AF483624 Bacillus marisflavi strain TF-11 
prokMSA_id:69296 AJ391199 Bacillus sp. AS-38 
prokMSA_id:74659 AF326361 Bacillus sp. MB-12 
prokMSA_id:79525 AF221855 Bacillus sp. JC1076 
prokMSA_id:82070 AY205296 Bacillus sp. CR1-2 
2.30.7.11.5.3852 OTU 1 seq
prokMSA_id:79819 AY189750 Bacillus mojavensis 
2.30.7.11.5.40602 OTU 2 seqs
prokMSA_id:14746 AF058766 Bacillus subtilis str. TB11
prokMSA_id:32902 AF447803 Bacillus subtilis A184 
2.30.7.11.5.41275 OTU 4 seqs
prokMSA_id:14753 AL009126 Bacillus subtilis =rrnD
prokMSA_id:14754 Z82044 Bacillus subtilis str. 168
prokMSA_id:50768 NC_000964 Bacillus subtilis complete genome
prokMSA_id:52408 Z99108 Bacillus subtilis complete genome section 5 of 21: from 8028
2.30.7.11.5.42390 OTU 6 seqs
prokMSA_id:14745 AB017592 Bacillus sp. str. TKSP24
prokMSA_id:57756 AF549498 Bacillus subtilis and -23S intergenic spacer complete ; and 
prokMSA_id:62519 AF399911 Bacillus subtilis subsp. endophyticus 
prokMSA_id:76502 AY162132 Bacillus subtilis strain MA12 
prokMSA_id:76767 AY162128 Bacillus subtilis strain HAZ14 
prokMSA_id:76813 AY162129 Bacillus subtilis strain WP1-21 
2.30.7.11.5.42456 OTU 3 seqs
prokMSA_id:14748 AB018487 Bacillus subtilis ATCC 21331
prokMSA_id:36092 AF233579 Bacillus subtilis var. chungkookjang complete 
prokMSA_id:38716 AF346494 Bacillus sp. BAC1 
2.30.7.11.5.42868 OTU 94 seqs
prokMSA_id:14709 AL009126 Bacillus subtilis =rrnB
prokMSA_id:14712 K00637 Bacillus subtilis
prokMSA_id:14713 AF008220 Bacillus subtilis
prokMSA_id:14718 K00637 Bacillus subtilis str. 168
prokMSA_id:14719 AL009126 Bacillus subtilis =
prokMSA_id:14720 AB018485 Bacillus subtilis str. OG-01-fringe
prokMSA_id:14727 X60646 Bacillus subtilis NCDO 1769
prokMSA_id:14728 AL009126 Bacillus subtilis =rrnI
prokMSA_id:14729 D64126 Bacillus subtilis str. 168
prokMSA_id:14731 D26185 Bacillus subtilis str. 168 =
prokMSA_id:14732 AL009126 Bacillus subtilis =rrnJ
prokMSA_id:14734 AB017587 Bacillus sp. str. SSA3
prokMSA_id:14735 AL009126 Bacillus subtilis =rrnG
prokMSA_id:14736 AL009126 Bacillus subtilis =rrnE
prokMSA_id:14737 D88802 Bacillus subtilis subsp. Marburg str. 168
prokMSA_id:14738 AL009126 Bacillus subtilis =rrnH
prokMSA_id:14739 D84213 Bacillus subtilis str. 168
prokMSA_id:14740 AL009126 Bacillus subtilis =rrnO
prokMSA_id:14741 AB017588 Bacillus sp. str. PM3
prokMSA_id:14742 AB017589 Bacillus sp. str. SS7
prokMSA_id:14743 AB017590 Bacillus sp. str. SS9
prokMSA_id:14744 AB017591 Bacillus sp. str. TKSP21
prokMSA_id:14747 AF142574 Bacillus subtilis ATCC 9799
prokMSA_id:14749 D26185 Bacillus subtilis str. 168 =rrnJ
prokMSA_id:14751 D26185 Bacillus subtilis str. 168 =rrnO
prokMSA_id:14752 AL009126 Bacillus subtilis =rrnW
prokMSA_id:14755 D26185 Bacillus subtilis str. 168 =rrnW
prokMSA_id:14756 AF074970 Bacillus subtilis subsp. spizizenii NRRL B-23049
prokMSA_id:14758 AF142577 Bacillus subtilis str. PY79
prokMSA_id:14759 AB018484 Bacillus subtilis str. OG-01-center
prokMSA_id:14760 AB018486 Bacillus subtilis ATCC 6633
prokMSA_id:14761 AB016721 Bacillus subtilis str. BS62
prokMSA_id:17774 AF318900 Bacillus subtilis strain N10 
prokMSA_id:17839 AF198249 Bacillus subtilis strain LN002 
prokMSA_id:18271 AJ276351 Bacillus subtilis strain DSM10
prokMSA_id:20995 AB055852 Bacillus sp. CH7-1 
prokMSA_id:22295 AB020199 Bacillus sp. strain TGS850
prokMSA_id:22715 AF302125 Bacillus sonorensis strain NRRL B-23161 
prokMSA_id:24519 AF465648 Bacillus sp. YNPRH8P-2 
prokMSA_id:24734 AF199464 Bacillus subtilis strain MK007 
prokMSA_id:25248 AB021191 Bacillus mojavensis 
prokMSA_id:25728 AF302123 Bacillus sonorensis strain NNRL B-23159 
prokMSA_id:27219 AY030330 Bacillus subtilis strain KL-073 
prokMSA_id:28010 AB021198 Bacillus vallismortis 
prokMSA_id:29247 AF302118 Bacillus sonorensis strain NRRL B-23154 
prokMSA_id:30531 AB055853 Bacillus sp. CH10-1 
prokMSA_id:30814 AF302120 Bacillus sonorensis strain NRRL B-23156 
prokMSA_id:30966 AF302119 Bacillus sonorensis strain NRRL B-23155 
prokMSA_id:31397 AF333249 Bacillus subtilis 
prokMSA_id:32365 AY030329 Bacillus mojavensis strain KL-070 
prokMSA_id:33178 AF234849 Bacillus subtilis strain FO-029a 
prokMSA_id:33496 AB055848 Bacillus sp. CH4-5 
prokMSA_id:33993 AB020198 Bacillus sp. strain TGS750
prokMSA_id:34751 AF302124 Bacillus sonorensis strain NRRL B-23160 
prokMSA_id:36125 AY030328 Bacillus licheniformis strain KL-068 
prokMSA_id:37662 AB055851 Bacillus sp. CH20-1 
prokMSA_id:38003 AY030331 Bacillus subtilis strain KL-077 
prokMSA_id:38471 AB050667 Bacillus sp. PP19-H3 
prokMSA_id:39670 AF302121 Bacillus sonorensis strain NRRL B-23157 
prokMSA_id:41964 AF302122 Bacillus sonorensis strain NRRL B-23158 
prokMSA_id:42164 AB055850 Bacillus sp. CH19-3 
prokMSA_id:43444 AB021181 Bacillus atrophaeus 
prokMSA_id:44167 Z99104 Bacillus subtilis complete genome section 1 of 21: from 1 to
prokMSA_id:45034 AB055007 Bacillus subtilis 
prokMSA_id:45582 AB020201 Bacillus sp. strain TGS1050
prokMSA_id:45823 Z99107 Bacillus subtilis complete genome section 4 of 21: from 6007
prokMSA_id:46335 AY030334 Bacillus mojavensis strain KL-154 
prokMSA_id:47166 AB055849 Bacillus sp. CH15-2 
prokMSA_id:49509 AB055846 Bacillus sp. CH4-4 
prokMSA_id:49632 AF408261 Bacillus sp. clone KL-37-1-5 
prokMSA_id:50400 AF287011 Bacillus subtilis strain O9 
prokMSA_id:52508 AF391127 Bacillus licheniformis strain KL-164 
prokMSA_id:55519 AY103463 Bacillus sp. CGTase complete 
prokMSA_id:60365 AF513474 Bacillaceae PH32 
prokMSA_id:63981 AY114158 Bacillus subtilis 
prokMSA_id:68748 AF479353 Glacial ice G50-TB5 
prokMSA_id:68752 AF479349 Glacial ice G200-SD1 
prokMSA_id:72314 AF411118 Bacillus sp. Bch1 complete 
prokMSA_id:73711 AB065370 Bacillus subtilis complete 
prokMSA_id:73909 Z99119 Bacillus subtilis complete genome section 16 of 21: from 299
prokMSA_id:74771 AB053351 Bacillus sp. BBK-1 
prokMSA_id:74972 AY162133 Bacillus subtilis strain BZ15 
prokMSA_id:76151 AY162131 Bacillus subtilis strain BHP6-1 
prokMSA_id:76500 AY162126 Bacillus subtilis strain GA1-5 
prokMSA_id:76539 AY162130 Bacillus subtilis strain STB29 
prokMSA_id:76920 AY162127 Bacillus subtilis strain HAZ2 
prokMSA_id:76989 AY168451 Bacillus subtilis 
prokMSA_id:77829 AY172514 Bacillus subtilis isolate BS-1 
prokMSA_id:77901 AB098574 Bacillus sp. TUT1010 
prokMSA_id:78407 AY172513 Bacillus subtilis isolate BS-2 
prokMSA_id:78577 AY176766 Bacillus subtilis strain B2 
prokMSA_id:78621 AY160223 Bacillus sp. X3 
prokMSA_id:78627 AY176768 Bacillus subtilis strain HJ19 
prokMSA_id:80665 AY189745 Bacillus sp. B-2 
2.30.7.11.5.493 OTU 1 seq
prokMSA_id:41451 AF252321 pPD8 
2.30.7.11.5.569 OTU 1 seq
prokMSA_id:40827 AY030332 Bacillus subtilis strain KL-120 
2.30.7.11.5.8268 OTU 1 seq
prokMSA_id:80904 AY189749 Bacillus sp. B-6 
2.30.7.11.5.8611 OTU 1 seq
prokMSA_id:29253 AB020193 Bacillus sp. strain TGS237
2.30.7.11.5.9292 OTU 1 seq
prokMSA_id:36519 AY030326 Bacillus licheniformis strain KL-047 
2.30.7.11.99 VARIOUS 37 seqs
2.30.7.11.99.35717 OTU 37 seqs
prokMSA_id:14710 D31739 Bacillus licheniformis str. B-6-4J
prokMSA_id:14721 X68416 Bacillus licheniformis DSM 13
prokMSA_id:14723 v. X81131 Bacillus sp. str. Termite isolate
prokMSA_id:14724 AJ000648 Bacillus sp. str. GCB-2
prokMSA_id:20533 AF234846 Bacillus licheniformis strain FO-024 
prokMSA_id:20711 AB039328 Bacillus licheniformis strain:M1-1
prokMSA_id:20987 AF234847 Bacillus licheniformis strain FO-026 
prokMSA_id:28357 AY030337 Bacillus licheniformis strain KL-185 
prokMSA_id:28540 AJ224963 Pseudobacillus carolinae 
prokMSA_id:32682 AF234855 Bacillus licheniformis strain FO-037 
prokMSA_id:34060 AF346496 Bacillus sp. USC13 complete 
prokMSA_id:35577 AF234862 Bacillus licheniformis strain FO-085 
prokMSA_id:35852 AY030335 Bacillus licheniformis strain KL-176 
prokMSA_id:38139 AY071857 Bacillus licheniformis strain PR-1 
prokMSA_id:38198 AF387515 Bacillus licheniformis strain KL-196 
prokMSA_id:38338 AF411341 Bacillus licheniformis strain SK-1 
prokMSA_id:40513 AB055006 Bacillus licheniformis 
prokMSA_id:42423 AF234848 Bacillus licheniformis strain FO-028 
prokMSA_id:42774 AF234850 Bacillus subtilis strain FO-032 
prokMSA_id:44403 AF234841 Bacillus licheniformis strain FO-003 
prokMSA_id:44878 AF234859 Bacillus licheniformis strain FO-074b 
prokMSA_id:45517 AY017347 Bacillus licheniformis 
prokMSA_id:46379 AF276309 Bacillus licheniformis strain B 
prokMSA_id:50052 AJ293011 Bacillus licheniformis strain EI-34-6
prokMSA_id:51205 AF286479 Bacillus sp. VAN04 
prokMSA_id:53195 AF234844 Bacillus licheniformis strain FO-017b 
prokMSA_id:56458 AF397062 Bacillus licheniformis AB111114 
prokMSA_id:58334 AF492486 Bacillus licheniformis 
prokMSA_id:63744 AJ494729 Bacillus pumilus isolate EI-26-5
prokMSA_id:64682 AF516176 Bacillus licheniformis strain YW1258 
prokMSA_id:71867 AF234852 Bacillus sp. FO-035b 
prokMSA_id:73877 AF387514 Bacillus licheniformis strain KL-182 
prokMSA_id:75073 AY162135 Bacillus licheniformis strain HAZ6-17 
prokMSA_id:75819 AY162134 Bacillus licheniformis strain GA1-17 
prokMSA_id:77146 AY162136 Bacillus licheniformis strain GA8 
prokMSA_id:77543 AF372616 Bacillus licheniformis strain Mo1 
prokMSA_id:78954 AY176764 Bacillus subtilis strain HJ11 
2.30.7.12 STAPHYLOCOCCUS_GROUP 268 seqs
2.30.7.12.1 STAPHYLOCOCCUS_SUBGROUP 136 seqs
2.30.7.12.1.12933 OTU 1 seq
prokMSA_id:14787 L37597 Staphylococcus aureus subsp. aureus ATCC 12600
2.30.7.12.1.13722 OTU 1 seq
prokMSA_id:14872 AB009938 Staphylococcus delphini str. Heidy ATCC 49171
2.30.7.12.1.13712 OTU 1 seq
prokMSA_id:14869 X86633 Staphylococcus sp. str. 05-41
2.30.7.12.1.14163 OTU 1 seq
prokMSA_id:14903 Z22778 Spirochaeta sp. str. HIS Oman N26
2.30.7.12.1.14924 OTU 1 seq
prokMSA_id:37919 AJ251530 CCUG 42722T 
2.30.7.12.1.2211 OTU 1 seq
prokMSA_id:64577 AF467406 Staphylococcus sp. clone Tminor17 
2.30.7.12.1.2242 OTU 1 seq
prokMSA_id:64581 AF467402 Staphylococcus sp. clone Tminor24 
2.30.7.12.1.2423 OTU 1 seq
prokMSA_id:26685 AF322002 Staphylococcus sp. B3117 
2.30.7.12.1.39363 OTU 8 seqs
prokMSA_id:14767 D83370 Staphylococcus lentus str. K21 MAFF 911385
prokMSA_id:14844 AB009946 Staphylococcus vitulinus str. DD 756 ATCC 51145
prokMSA_id:14879 AB009942 Staphylococcus pulvereri ATCC 51698
prokMSA_id:14880 S83569 Staphylococcus sciuri ATCC 20345
prokMSA_id:14881 AB004765 unnamed organism
prokMSA_id:34155 AJ421446 Staphylococcus sciuri subsp. sciuri strain DSM 20345T
prokMSA_id:66238 AF508104 Staphylococcus sciuri isolate S7 
prokMSA_id:70830 AF423242 soil clone 240-1 
2.30.7.12.1.42686 OTU 6 seqs
prokMSA_id:14868 D83371 Staphylococcus saprophyticus subsp. saprophyticus MAFF 91147
prokMSA_id:14893 AB009936 Staphylococcus cohnii subsp. urealyticum str. CK27 ATCC 4933
prokMSA_id:14904 D83361 Staphylococcus cohnii subsp. cohnii MAFF 911487
prokMSA_id:61948 AJ244683 Staphylococcus sp. V4.BP.06 
prokMSA_id:64563 AF467419 Staphylococcus sp. clone Gpanamen9 
prokMSA_id:78094 AJ517414 Staphylococcus nepalensis strain CW1T
2.30.7.12.1.42740 OTU 3 seqs
prokMSA_id:64578 AF467405 Staphylococcus sp. clone Tminor25 
prokMSA_id:64579 AF467404 Staphylococcus sp. clone Tminor27 
prokMSA_id:64580 AF467403 Staphylococcus sp. clone Tminor19 
2.30.7.12.1.42761 OTU 2 seqs
prokMSA_id:14763 L37598 Staphylococcus auricularis str. WK811M ATCC 33753
prokMSA_id:14785 D83358 Staphylococcus auricularis str. WK811M MAFF 911484
2.30.7.12.1.42764 OTU 2 seqs
prokMSA_id:14768 D83373 Staphylococcus simulans str. MK 148 MAFF 910161
prokMSA_id:77128 AY167961 Swine manure RT-22 
2.30.7.12.1.42829 OTU 77 seqs
prokMSA_id:14764 D83360 Staphylococcus chromogenes str. 1462 MAFF 911474
prokMSA_id:14765 AB009944 Staphylococcus pasteuri ATCC 51129
prokMSA_id:14771 X66100 Staphylococcus haemolyticus ATCC 29970
prokMSA_id:14779 AB009943 Staphylococcus piscifermentans ATCC 51136
prokMSA_id:14781 Y15754 Staphylococcus piscifermentans str. SK 03
prokMSA_id:14782 Y15753 Staphylococcus piscifermentans str. PU-87
prokMSA_id:14783 L37605 Staphylococcus epidermidis ATCC 14990
prokMSA_id:14784 AB002641 str. HTA563
prokMSA_id:14790 AF124039 Staphylococcus #2 from Psoroptes ovis
prokMSA_id:14791 AB009937 Staphylococcus capitis subsp. ureolyticus ATCC 49326
prokMSA_id:14792 L37602 Staphylococcus saccharolyticus ATCC 14953
prokMSA_id:14795 D83363 Staphylococcus epidermidis ATCC 14990
prokMSA_id:14806 AB009945 Staphylococcus schleiferi subsp. coagulans str. GA211 ATCC 4
prokMSA_id:14807 D83372 Staphylococcus schleiferi str. CD22-1
prokMSA_id:14814 L37603 Staphylococcus warneri ATCC 27836
prokMSA_id:14816 AJ223451 str. 2e
prokMSA_id:14817 X75944 Staphylococcus epidermidis
prokMSA_id:14818 L37601 Staphylococcus hominis subsp. hominis ATCC 27844
prokMSA_id:14826 AB009935 Staphylococcus caprae ATCC 35538
prokMSA_id:14827 D83362 Staphylococcus epidermidis str. MAFF 911486
prokMSA_id:14830 AB009934 Staphylococcus carnosus subsp. carnosus ATCC 51365
prokMSA_id:14834 S83566 Staphylococcus muscae str. MB4 CCM 4175
prokMSA_id:14836 X66101 Staphylococcus hominis subsp. hominis ATCC 27844
prokMSA_id:14837 X86636 Staphylococcus sp. str. 1F-09
prokMSA_id:14857 L37600 Staphylococcus haemolyticus ATCC 29970
prokMSA_id:14859 AB009941 Staphylococcus lugdunensis str. N860297 ATCC 43809
prokMSA_id:14862 Y12593 Staphylococcus caprae DSM 20608
prokMSA_id:14864 D83367 Staphylococcus haemolyticus MAFF 911476
prokMSA_id:14867 X86640 Staphylococcus sp. str. 1F-23
prokMSA_id:14873 L37599 Staphylococcus capitis subsp. capitis ATCC 27840
prokMSA_id:14874 AJ224939 Staphylococcus sp. str. Koll-2
prokMSA_id:14878 AF041361 Staphylococcus pasteuri ATCC 51129
prokMSA_id:14891 X75943 Staphylococcus epidermidis
prokMSA_id:14892 D83369 Staphylococcus intermedius str. H11 MAFF 911388
prokMSA_id:14894 Y15750 Staphylococcus condimenti str. F-2 DSM 11674
prokMSA_id:14895 AF041359 Staphylococcus piscifermentans NRIC 1818
prokMSA_id:14897 X84731 Staphylococcus lutrae
prokMSA_id:14898 D83364 Staphylococcus felis str. GD521 ATCC 49168
prokMSA_id:14899 D83365 Staphylococcus felis str. FD21-2
prokMSA_id:21287 AF371538 clone p-888-a5 
prokMSA_id:23774 AF234853 Staphylococcus capitis 
prokMSA_id:29343 AY057450 Staphylococcus sp. YSS/2001-5 complete 
prokMSA_id:29754 AJ316320 Staphylococcus sp. LMG 21006 strain LMG 21006
prokMSA_id:30519 S83568 Staphylococcus schleiferi Genomic 1554 nt
prokMSA_id:41763 AY030318 Staphylococcus hominis strain JPL-5 
prokMSA_id:42583 AY030340 Staphylococcus epidermidis strain KL-004 
prokMSA_id:45990 AY030342 Staphylococcus epidermidis strain KL-096 
prokMSA_id:46870 AY030321 Staphylococcus capitis strain JPL-2 
prokMSA_id:48424 AY030317 Staphylococcus epidermidis strain JPL-7 
prokMSA_id:52769 AJ276810 Staphylococcus sp. strain LMG-19417
prokMSA_id:55429 AF532916 Staphylococcus pasteuri strain ZA-b2 
prokMSA_id:55657 AF532915 Staphylococcus pasteuri strain ZA-b1 
prokMSA_id:60719 AF532917 Staphylococcus pasteuri strain ZA-b3 
prokMSA_id:64554 AF467430 Staphylococcus sp. clone Gexpansis25 
prokMSA_id:64558 AF467425 Staphylococcus sp. clone bottae4 
prokMSA_id:64559 AF467424 Staphylococcus sp. clone bottae7 
prokMSA_id:64561 AF467423 Staphylococcus sp. clone bottae2 
prokMSA_id:64566 AF467418 Staphylococcus sp. clone Gsetzeri3 
prokMSA_id:64567 AF467416 Staphylococcus sp. clone Gexpansis24 
prokMSA_id:64570 AF467412 Staphylococcus sp. clone Tminor8 
prokMSA_id:64572 AF467411 Staphylococcus sp. clone Gcentralis14 
prokMSA_id:64573 AF467410 Staphylococcus sp. clone Tminor20 
prokMSA_id:64574 AF467409 Staphylococcus sp. clone Ggeomydis6 
prokMSA_id:64575 AF467407 Staphylococcus sp. clone Tminor30 
prokMSA_id:64576 AF467408 Staphylococcus sp. clone Gsetzer7 
prokMSA_id:70096 AF397060 Staphylococcus epidermidis AB111112 
prokMSA_id:71236 AF467415 Staphylococcus sp. clone Gcentralis1 
prokMSA_id:74274 X84731 Staphylococcus sp
prokMSA_id:74413 AF202011 Human oral C20 
prokMSA_id:77317 AE016749 Staphylococcus epidermidis ATCC 12228 section 6 of 9 of the 
prokMSA_id:77340 AY167864 Staphylococcus epidermidis strain SAFR-016 
prokMSA_id:77345 AY167805 Staphylococcus hominis strain SAFN-038 
prokMSA_id:77410 AE016751 Staphylococcus epidermidis ATCC 12228 section 8 of 9 of the 
prokMSA_id:77455 NC_004461 Staphylococcus epidermidis ATCC 12228 complete genome
prokMSA_id:77465 AY167804 Staphylococcus epidermidis strain SAFN-039 
prokMSA_id:77574 AE016750 Staphylococcus epidermidis ATCC 12228 section 7 of 9 of the 
prokMSA_id:78674 AJ536435 Staphylococcus sp. 9:4 isolate 9:4 1538BP
2.30.7.12.1.42863 OTU 29 seqs
prokMSA_id:14762 L37596 Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305
prokMSA_id:14786 AB009939 Staphylococcus equorum ATCC 43958
prokMSA_id:14808 AF004220 Staphylococcus succinus str. AMG-D1 ATCC 700337
prokMSA_id:14809 AF004219 Staphylococcus succinus str. AMG-D2
prokMSA_id:14811 AB004764 unnamed organism
prokMSA_id:14823 D83374 Staphylococcus xylosus MAFF 911482
prokMSA_id:14824 X86641 Staphylococcus sp. str. AG-30
prokMSA_id:14828 AB009933 Staphylococcus arlettae str. BP47 ATCC 43957
prokMSA_id:14831 AB009940 Staphylococcus kloosii str. SC210 ATCC 43959
prokMSA_id:14877 L20250 Staphylococcus saprophyticus subsp. saprophyticus str. NT75 
prokMSA_id:14901 D83366 Staphylococcus gallinarum str. VIII1 ATCC 35539
prokMSA_id:21472 AJ320272 Staphylococcus succinus strain SB72
prokMSA_id:40009 AF200217 Psychrophilic marine PS35 complete 
prokMSA_id:62644 AF527483 Staphylococcus linens 
prokMSA_id:63475 AY121979 Staphylococcus sp. RA90 
prokMSA_id:64553 AF467429 Staphylococcus sp. clone bottae10 
prokMSA_id:64555 AF467428 Staphylococcus sp. clone 87-7 
prokMSA_id:64556 AF467427 Staphylococcus sp. clone Gexpansis4 
prokMSA_id:64557 AF467426 Staphylococcus sp. clone 87-8 
prokMSA_id:64560 AF467422 Staphylococcus sp. clone bottae5 
prokMSA_id:64562 AF467421 Staphylococcus sp. clone Gexpansis9 
prokMSA_id:64564 AF467420 Staphylococcus sp. clone 87-5 
prokMSA_id:64565 AF467417 Staphylococcus sp. clone 87-10 
prokMSA_id:64568 AF467414 Staphylococcus sp. clone Ggeomydis17 
prokMSA_id:64571 AF467413 Staphylococcus sp. clone Gexpansis21 
prokMSA_id:64738 AF515587 Staphylococcus xylosus 
prokMSA_id:78763 AY161046 Staphylococcus cohnii strain PLC-9 
prokMSA_id:79759 AY189747 Staphylococcus sp. B-3 
prokMSA_id:80662 AF468443 Arctic sea ice bacterum ARK9973 
2.30.7.12.1.6860 OTU 1 seq
prokMSA_id:29030 AY053476 AT425_Eub41 
2.30.7.12.2 MAC.CASEOLYTICUS_SUBGROUP 11 seqs
2.30.7.12.2.14169 OTU 1 seq
prokMSA_id:14906 AF145815 clone K20-12
2.30.7.12.2.41724 OTU 5 seqs
prokMSA_id:14908 Y15714 Macrococcus bovicus str. L2F4
prokMSA_id:14911 Y15712 Macrococcus equipercicus str. H8h3
prokMSA_id:14912 Y15713 Macrococcus carouselicus str. H8b16
prokMSA_id:55999 AY119686 Macrococcus brunensis complete 
prokMSA_id:64394 AY119685 Macrococcus unicus complete 
2.30.7.12.2.42808 OTU 3 seqs
prokMSA_id:14905 Y15711 Macrococcus caseolyticus str. DD 4508 ATCC 13548
prokMSA_id:14910 D83359 Macrococcus caseolyticus str. DD 4508 MAFF 911387
prokMSA_id:61797 AB079788 Micrococcus luteus 
2.30.7.12.2.6329 OTU 1 seq
prokMSA_id:65687 AF507697 soil clone C065 
2.30.7.12.2.674 OTU 1 seq
prokMSA_id:64393 AY119687 Macrococcus lamae complete 
2.30.7.12.3 GEM.HAEMOLYSANS_SUBGROUP 16 seqs
2.30.7.12.3.11350 OTU 1 seq
prokMSA_id:45265 AJ251987 Gemella sp. M60449/99/1 T 
2.30.7.12.3.13740 OTU 1 seq
prokMSA_id:37750 AF275710 Hailaer soda lake T8 
2.30.7.12.3.14209 OTU 1 seq
prokMSA_id:14917 AB013835 str. 70.i
2.30.7.12.3.17853 OTU 1 seq
prokMSA_id:76927 AJ534689 Gemella haemolysans clone S15A-MN66
2.30.7.12.3.30303 OTU 2 seqs
prokMSA_id:14913 X94559 Salinicoccus roseus DSM 5351
prokMSA_id:31771 AF237976 Salinicoccus roseus 
2.30.7.12.3.30307 OTU 5 seqs
prokMSA_id:14914 L14327 Gemella morbillorum ATCC 27824
prokMSA_id:14916 Y13366 Gemella 933-88 str. 933-88
prokMSA_id:14918 L14326 Gemella haemolysans ATCC 10379
prokMSA_id:14922 Y13364 Gemella sanguinis str. 2045-94 CCUG 37820
prokMSA_id:50458 AY005051 Gemella sp. oral strain C24KA 
2.30.7.12.3.31487 OTU 3 seqs
prokMSA_id:14915 Y13363 Gemella 1754-94 str. 1754-94
prokMSA_id:14920 Y13365 Gemella 617-93 str. 617-93
prokMSA_id:52225 AY005050 Gemella sp. oral strain A31SC 
2.30.7.12.3.659 OTU 1 seq
prokMSA_id:26423 AY028927 Salinicoccus hispanicus 
2.30.7.12.3.8480 OTU 1 seq
prokMSA_id:80961 AY188939 Marine P_wp0225 
2.30.7.12.4 B.CEREUS_SUBGROUP 102 seqs
2.30.7.12.4.16517 OTU 1 seq
prokMSA_id:40011 AF332545 Bacillus thuringiensis isolate B73 
2.30.7.12.4.16627 OTU 1 seq
prokMSA_id:70144 AJ419629 Bacillus luciferensis strain LMG 18422
2.30.7.12.4.34462 OTU 96 seqs
prokMSA_id:14929 Z84575 Bacillus cereus str. WSBC10030
prokMSA_id:14930 Z84576 Bacillus cereus str. WSBC10037
prokMSA_id:14931 Z84577 Bacillus cereus str. WSBC10201
prokMSA_id:14932 Z84578 Bacillus cereus str. WSBC10204
prokMSA_id:14933 Z84579 Bacillus cereus str. WSBC10206
prokMSA_id:14934 Z84580 Bacillus cereus str. WSBC10210
prokMSA_id:14935 Z84581 Bacillus cereus ATCC 27877
prokMSA_id:14936 Z84589 Bacillus cereus str. WSBC10030
prokMSA_id:14937 Y18473 Bacillus thuringiensis str. WS2623
prokMSA_id:14938 Z84582 Bacillus mycoides str. MWS5303-1-4
prokMSA_id:14939 Z84583 Bacillus mycoides str. MWS5303-2-51
prokMSA_id:14940 Z84584 Bacillus thuringiensis str. WS 261
prokMSA_id:14941 Z84585 Bacillus thuringiensis str. WS 2617
prokMSA_id:14943 Z84587 Bacillus thuringiensis str. WS 2625
prokMSA_id:14944 Z84588 Bacillus thuringiensis str. WS 2626
prokMSA_id:14945 Z84590 Bacillus cereus str. WSBC10030
prokMSA_id:14946 Z84591 Bacillus mycoides str. MWS5303-1-4
prokMSA_id:14947 Z84593 Bacillus thuringiensis str. WS 2614
prokMSA_id:14948 Z84594 Bacillus thuringiensis str. WS 2617
prokMSA_id:14949 AF144645 Bacillus mycoides str. DRC1
prokMSA_id:14950 AB003391 str. sp6
prokMSA_id:14952 Y15466 Bacillus sp. str. JJ#1
prokMSA_id:14956 AB002640 str. HTA484
prokMSA_id:14957 AF027659 Bacillus BSID723 str. BSID723
prokMSA_id:14965 AB004761 unnamed organism
prokMSA_id:14969 AF157112 Bacillus thuringiensis str. 82347
prokMSA_id:14971 AF160221 Bacillus thuringiensis
prokMSA_id:16457 AF290545 Bacillus thuringiensis strain ATCC10792 
prokMSA_id:16497 AF290561 Bacillus sp. AH 678 
prokMSA_id:17205 AF417874 Bacillus sp. YSS/2001-3 
prokMSA_id:18433 AB021192 Bacillus mycoides 
prokMSA_id:19663 AF290546 Bacillus cereus strain ATCC11778 
prokMSA_id:20900 AF290558 Bacillus sp. AH 628 
prokMSA_id:20962 AF350926 Bacillus sp. 240B1 
prokMSA_id:22695 AF290562 Bacillus sp. AH 526 
prokMSA_id:24287 AF290548 Bacillus cereus strain ATCC31293 
prokMSA_id:24784 AF406633 Bacillus sp. CMB03 
prokMSA_id:25241 AF290554 Bacillus cereus strain AH 521 
prokMSA_id:25668 AF206326 Bacillus cereus 
prokMSA_id:26368 AB021199 Bacillus weihenstephanensis 
prokMSA_id:28214 AF441732 Bacillus sp. Kaza-37 
prokMSA_id:28561 AF390086 Bacillus cereus strain S-5 
prokMSA_id:30826 AJ288157 Bacillus cereus isolate Ki 2l
prokMSA_id:31673 AF176322 Bacillus cereus 
prokMSA_id:35163 AF155957 Bacillus mycoides strain 10206 
prokMSA_id:35737 AY048782 Bacillus sp. P16 
prokMSA_id:37153 AF290547 Bacillus cereus strain ATCC14579 
prokMSA_id:39328 AF441728 Bacillus sp. Kaza-31 
prokMSA_id:39601 AF290560 Bacillus sp. AH 665 
prokMSA_id:44252 AF290559 Bacillus sp. AH 648 
prokMSA_id:45153 AB067810 Bacillus sp. KPU 0013 
prokMSA_id:46656 AF155955 Bacillus thuringiensis strain B8 
prokMSA_id:52128 AF155956 Bacillus mycoides strain 6462 
prokMSA_id:55839 AF479367 Glacial ice SB12K-9-4 
prokMSA_id:56041 AB050630 Bacillus cereus 
prokMSA_id:58975 AY138277 Bacillus cereus strain 2000031503 
prokMSA_id:58976 AY138279 Bacillus cereus strain 2000031513 
prokMSA_id:58977 AY138278 Bacillus cereus strain G3317 
prokMSA_id:58978 AY138274 Bacillus cereus strain 2000031498 
prokMSA_id:58979 AY138275 Bacillus cereus strain LRN 
prokMSA_id:58980 AY138276 Bacillus cereus strain 2000031491 
prokMSA_id:60443 AY131220 Bacillus sp. Fa25 
prokMSA_id:60446 AY131217 Bacillus sp. Fa7 
prokMSA_id:62451 AY124766 Bacillus sp. FP1/2002 
prokMSA_id:63455 AF522353 Bacillus cereus SH 01 
prokMSA_id:64548 AF397398 Bacillus sp. A23 
prokMSA_id:64549 AF397399 Bacillus sp. A24 
prokMSA_id:68733 AF479369 Glacial ice SB100-8-1 
prokMSA_id:70008 AY138270 Bacillus cereus strain H1439 
prokMSA_id:70107 AY138272 Bacillus cereus strain 2000031486 
prokMSA_id:70161 AY138273 Bacillus cereus strain G9667 
prokMSA_id:70317 AF290550 Bacillus cereus strain ATCC43881 
prokMSA_id:70527 AY138284 Bacillus thuringiensis strain 2002017401 
prokMSA_id:70620 AY138290 Bacillus thuringiensis strain 2000031482 
prokMSA_id:70673 AF290557 Bacillus sp. AH 540 
prokMSA_id:70696 AY138288 Bacillus thuringiensis strain 2000031494 
prokMSA_id:70778 AF290549 Bacillus thuringiensis strain ATCC33679 
prokMSA_id:71443 AY138287 Bacillus thuringiensis strain 2000031496 
prokMSA_id:71586 AF290551 Bacillus cereus strain ATCC53522 
prokMSA_id:72196 AY138285 Bacillus thuringiensis strain 2000031509 
prokMSA_id:72393 AY138280 Bacillus thuringiensis strain 2000032757 
prokMSA_id:72615 AY138282 Bacillus thuringiensis strain 2000032755 
prokMSA_id:72680 AY138289 Bacillus thuringiensis strain 2000031485 
prokMSA_id:72703 AF290555 Bacillus cereus strain AH 527 
prokMSA_id:72810 AY138286 Bacillus thuringiensis strain 2000031508 
prokMSA_id:72980 AF503203 Bacillus sp. SVM 
prokMSA_id:73059 AY138283 Bacillus thuringiensis strain 2002007400 
prokMSA_id:73202 AF290556 Bacillus sp. AH 533 
prokMSA_id:73565 AY138281 Bacillus thuringiensis strain 2000032756 
prokMSA_id:74064 AF290552 Bacillus anthracis strain Sterne 
prokMSA_id:77357 AY167823 Bacillus thuringiensis strain SAFN-003 
prokMSA_id:78603 AY176771 Bacillus cereus strain HJ9 
prokMSA_id:78682 AY176769 Bacillus cereus strain HJ20 
prokMSA_id:78840 AY176767 Bacillus thuringiensis 
prokMSA_id:79142 AJ539225 Bacillus cereus strain A78
prokMSA_id:79578 AJ539226 clone AY13
2.30.7.12.4.41366 OTU 2 seqs
prokMSA_id:38188 AY048851 Bacillus sp. CMB26 
prokMSA_id:39946 AF234842 Bacillus sp. FO-011 
2.30.7.12.4.42458 OTU 2 seqs
prokMSA_id:14954 AJ000987 clone DA095
prokMSA_id:39453 AF234860 Bacillus mycoides 
2.30.7.12.99 VARIOUS 3 seqs
2.30.7.12.99.32011 OTU 3 seqs
prokMSA_id:28012 AY028926 Jeotgalibacillus psychrophilus 
prokMSA_id:36078 AY038633 clone GL178.18 
prokMSA_id:44574 AY028925 Jeotgalibacillus halotolerans 
2.30.7.13 B.SPHAERICUS_GROUP 128 seqs
2.30.7.13.1 B.SPHAERICUS_SUBGROUP 15 seqs
2.30.7.13.1.14359 OTU 1 seq
prokMSA_id:14988 L38654 Bacillus sphaericus str. BCA16
2.30.7.13.1.18740 OTU 1 seq
prokMSA_id:39794 AF169511 Bacillus sp. BD-109 
2.30.7.13.1.19595 OTU 1 seq
prokMSA_id:25415 AF169496 Bacillus sp. B-23269 
2.30.7.13.1.31889 OTU 4 seqs
prokMSA_id:28870 AF169525 Bacillus sp. BD-99 
prokMSA_id:41559 AF169509 Bacillus sp. BD-103 
prokMSA_id:48079 AF169520 Bacillus sp. BD-87 
prokMSA_id:48910 AF169508 Bacillus sp. BD-101 
2.30.7.13.1.32945 OTU 7 seqs
prokMSA_id:14976 L14013 Bacillus fusiformis ATCC 7055
prokMSA_id:14977 L14014 Bacillus sphaericus NRS 592
prokMSA_id:14978 L14011 Bacillus sphaericus str. 2362
prokMSA_id:14979 L14015 Bacillus sphaericus NRS 400
prokMSA_id:14980 L14016 Bacillus sphaericus NRS 1198
prokMSA_id:14981 L14012 Bacillus sphaericus str. 2297
prokMSA_id:14982 L14010 Bacillus sphaericus str. 1013 T. Gibson ATCC 14577
2.30.7.13.1.4178 OTU 1 seq
prokMSA_id:42508 AF169546 Bacillus sp. NRS-866 
2.30.7.13.2 CRP.LATUM_SUBGROUP 8 seqs
2.30.7.13.2.14367 OTU 1 seq
prokMSA_id:14992 X70318 Caryophanon latum NCDO 1745
2.30.7.13.2.16198 OTU 1 seq
prokMSA_id:77308 AY167818 Bacillus silvestris strain SAFN-010 
2.30.7.13.2.21160 OTU 1 seq
prokMSA_id:64192 AJ491302 Caryophanon latum strain DSM 14151T
2.30.7.13.2.32601 OTU 2 seqs
prokMSA_id:14994 X70314 Caryophanon latum NCIMB 9533
prokMSA_id:64190 AJ491303 Caryophanon tenue strain DSM 14152T
2.30.7.13.2.33548 OTU 2 seqs
prokMSA_id:14990 AJ006086 Bacillus silvestris str. HR3-23
prokMSA_id:71479 AF385535 Caryophanon sp. oral clone AW086 
2.30.7.13.2.7701 OTU 1 seq
prokMSA_id:73669 AF423297 soil clone 889-1 
2.30.7.13.3 KUR.ZOPFII_SUBGROUP 6 seqs
2.30.7.13.3.11885 OTU 1 seq
prokMSA_id:60381 AF513458 Bacillaceae LA38BB 
2.30.7.13.3.14371 OTU 1 seq
prokMSA_id:14996 X70320 Kurthia gibsonii NCIMB 9758
2.30.7.13.3.14372 OTU 1 seq
prokMSA_id:14997 X70321 Kurthia zopfii str. F64/100; K5 NCIMB 9878
2.30.7.13.3.33404 OTU 3 seqs
prokMSA_id:16706 AF169534 Bacillus sp. NRS-1694 
prokMSA_id:35115 AF169519 Bacillus sp. BD-85 
prokMSA_id:45761 AF169535 Bacillus sp. NRS-1695 
2.30.7.13.6 B.PSYCHROPHILUS_SUBGROUP 15 seqs
2.30.7.13.6.10409 OTU 1 seq
prokMSA_id:15010 AJ000988 DA057 
2.30.7.13.6.10398 OTU 1 seq
prokMSA_id:15009 AJ000980 DA114 
2.30.7.13.6.16235 OTU 1 seq
prokMSA_id:77326 AY167819 Sporosarcina aquimarina strain SAFN-008 
2.30.7.13.6.16277 OTU 1 seq
prokMSA_id:77347 AY167816 Filibacter limicola strain SAFN-012 
2.30.7.13.6.1851 OTU 1 seq
prokMSA_id:78989 AB094469 Sporosarcina sp. 2216.15.2 
2.30.7.13.6.19228 OTU 1 seq
prokMSA_id:17599 AF202057 Sporosarcina ureae 
2.30.7.13.6.34971 OTU 8 seqs
prokMSA_id:15008 X68415 Bacillus globisporus str. W25 DSM 4
prokMSA_id:15012 X54968 Bacillus psychrophilus str. W16A ATCC 23304
prokMSA_id:15014 AF157111 Bacillus psychrophilus str. 82346
prokMSA_id:15015 D16277 Bacillus psychrophilus str. W16A IAM 12468
prokMSA_id:33293 AJ431331 Bacillus sp. ikaite c21 isolate ikaite21
prokMSA_id:39603 AJ431329 Bacillus sp. ikaite c1 isolate ikaite c1
prokMSA_id:45316 AJ431330 Bacillus sp. ikaite c5 isolate ikaite c5
prokMSA_id:51589 AJ292316 Filibacter limicola strain DSM 13886T
2.30.7.13.6.5539 OTU 1 seq
prokMSA_id:57755 AF548874 Bacillus sp. CPB 2 
2.30.7.13.7 PLC.MCMEEKINII_SUBGROUP 30 seqs
2.30.7.13.7.10442 OTU 1 seq
prokMSA_id:15024 X62173 Planococcus kocurii NCIMB 629
2.30.7.13.7.10440 OTU 1 seq
prokMSA_id:15021 AF029364 Planococcus alkanoclasticus str. MAE2 NCIMB 13489
2.30.7.13.7.1606 OTU 1 seq
prokMSA_id:48809 AF394173 Blackwater bioreactor BW21 
2.30.7.13.7.18195 OTU 1 seq
prokMSA_id:63194 AJ496039 Planococcus sp. p16X 
2.30.7.13.7.18903 OTU 1 seq
prokMSA_id:55403 AJ514408 Sporosarcina macmurdoensis strain CMS 21w
2.30.7.13.7.18909 OTU 1 seq
prokMSA_id:18100 AY030325 Bacillus sp. KL-024 
2.30.7.13.7.20796 OTU 1 seq
prokMSA_id:17754 AJ297716 Bacillus sp. isolate P53-6
2.30.7.13.7.30837 OTU 2 seqs
prokMSA_id:70975 AY145537 Planococcaceae GP-13 
prokMSA_id:73238 AY145538 Planococcaceae GP-14 
2.30.7.13.7.39962 OTU 5 seqs
prokMSA_id:15017 D55729 Planococcus okeanokoites
prokMSA_id:15019 AF041791 Planococcus mcmeekinii str. S23F2 ATCC 700539
prokMSA_id:45093 AJ314746 Planococcus psychrophilus strain CMS 53or
prokMSA_id:52488 AF144750 Planococcus sp. JG07 
prokMSA_id:77011 AJ519633 Clostridium sp. clone Sh765B-AG-2
2.30.7.13.7.41359 OTU 7 seqs
prokMSA_id:15025 X62172 Planococcus citreus NCIMB 1493
prokMSA_id:16646 AJ314744 Planococcus southpolaris strain CMS 3or
prokMSA_id:66682 AF500008 Planococcus citreus strain TF-16 
prokMSA_id:66683 AF500007 Planococcus maritimus strain TF-9 
prokMSA_id:68743 AF479357 Glacial ice G50-TS4 
prokMSA_id:73281 AF237975 Planococcus citreus 
prokMSA_id:81178 AJ544622 Planococcus maitrii strain S1
2.30.7.13.7.41799 OTU 4 seqs
prokMSA_id:29551 AJ314745 Planococcus southpolaris strain CMS 26or
prokMSA_id:33254 AF242541 Planococcus sp. 'SOS Orange' 
prokMSA_id:37775 AJ314747 Planococcus southpolaris strain CMS 84or
prokMSA_id:74784 AF324659 Planococcus psychrotoleratus 
2.30.7.13.7.42898 OTU 4 seqs
prokMSA_id:15018 AB017538 Renibacterium salmoninarum
prokMSA_id:22739 AJ277984 Bacillus psychrodurans strain DSM 11713
prokMSA_id:23863 AJ277983 Bacillus psychrotolerans strain DSM 11706
prokMSA_id:36118 AF308876 Arsenic resistant soil 7-04 
2.30.7.13.7.4305 OTU 1 seq
prokMSA_id:35322 AB016269 Bacillus sp. strain NIBH P3M5 complete 
2.30.7.13.99 VARIOUS 54 seqs
2.30.7.13.99.42801 OTU 54 seqs
prokMSA_id:14984 D16280 Bacillus sphaericus str. IAM 13420
prokMSA_id:16731 AF169530 Bacillus sp. NRS-156 
prokMSA_id:18543 AF169526 Bacillus sp. NRS-111 
prokMSA_id:19002 AF169527 Bacillus sp. NRS-1186 
prokMSA_id:19225 AF169536 Bacillus sp. NRS-250 
prokMSA_id:19282 AF169538 Bacillus sp. NRS-400 
prokMSA_id:19710 AF169504 Bacillus sp. B-23286 
prokMSA_id:20757 AF169497 Bacillus sp. B-23279 
prokMSA_id:20955 AF169507 Bacillus sp. B-4297 
prokMSA_id:21252 AF169532 Bacillus sp. NRS-1692 
prokMSA_id:21894 AF169493 Bacillus sp. B-183 
prokMSA_id:22582 AJ310084 Bacillus sphaericus strain DSM 28
prokMSA_id:22934 AF169541 Bacillus sp. NRS-719 
prokMSA_id:23206 AF169544 Bacillus sp. NRS-800 
prokMSA_id:23256 AF169494 Bacillus sp. B-1876 
prokMSA_id:23764 AF169521 Bacillus sp. BD-89 
prokMSA_id:25196 AF169506 Bacillus sp. B-23288 
prokMSA_id:26107 AF169545 Bacillus sp. NRS-810 
prokMSA_id:29002 AF169517 Bacillus sp. BD-121 
prokMSA_id:30216 AF169492 Bacillus sp. B-14957 
prokMSA_id:31069 AF169495 Bacillus sphaericus 
prokMSA_id:31358 AF169491 Bacillus sp. B-14905 
prokMSA_id:31780 AF169542 Bacillus sp. NRS-732 
prokMSA_id:32927 AF169502 Bacillus sp. B-23284 
prokMSA_id:33671 AF169514 Bacillus sp. BD-115 
prokMSA_id:33727 AF169547 Bacillus sp. NRS-967 
prokMSA_id:34462 AF169500 Bacillus sp. B-23282 
prokMSA_id:34645 AF435435 Bacillus sphaericus strain 205y 
prokMSA_id:35652 AF169490 Bacillus sp. B-14865 
prokMSA_id:36376 AF169513 Bacillus sp. BD-113 
prokMSA_id:36977 AF169539 Bacillus sp. NRS-593 
prokMSA_id:38572 AF169515 Bacillus sp. BD-117 
prokMSA_id:39362 AF169529 Bacillus sp. NRS-1223 
prokMSA_id:39763 AF169543 Bacillus sp. NRS-752 
prokMSA_id:39772 AJ310083 Bacillus fusiformis strain DSM 2898T
prokMSA_id:41414 AF169512 Bacillus sp. BD-111 
prokMSA_id:41978 AF169524 Bacillus sp. BD-95 
prokMSA_id:42176 AF169523 Bacillus sp. BD-94 
prokMSA_id:43479 AF169540 Bacillus sp. NRS-718 
prokMSA_id:44025 AF427154 Bacillus sp. PAR5 
prokMSA_id:44036 AY043358 Bacillus sp. ZYM complete 
prokMSA_id:47340 AF169505 Bacillus sp. B-23287 
prokMSA_id:47760 AF169503 Bacillus sp. B-23285 
prokMSA_id:48387 AF169516 Bacillus sp. BD-119 
prokMSA_id:49078 AF169537 Bacillus fusiformis 
prokMSA_id:50391 AF169498 Bacillus sp. B-23280 
prokMSA_id:52279 AF169522 Bacillus sp. BD-93 
prokMSA_id:62950 AF526913 Bacillus sp. 34hs1 rrn 
prokMSA_id:67860 AY082370 Bacillus sp. clone DGG30 
prokMSA_id:70175 AF385530 Caryophanon sp. oral clone AV085 
prokMSA_id:70299 AJ311893 Bacillus sphaericus strain B3
prokMSA_id:72583 AJ311894 Bacillus sphaericus strain DSM 396 NTCC 9602
prokMSA_id:74854 AF169518 Bacillus sp. BD-83 
prokMSA_id:78227 AB098577 Bacillus sp. TUT1008 
2.30.7.14 B.THERMOCLOACAE 3 seqs
2.30.7.14.10054 OTU 1 seq
prokMSA_id:67361 AB084065 Bacillus sp. MSP06G 
2.30.7.14.10445 OTU 1 seq
prokMSA_id:15026 Z26939 Bacillus thermocloacae DSM 5250
2.30.7.14.2090 OTU 1 seq
prokMSA_id:27234 AB034710 compost 4-28 
2.30.7.15 LISTERIA-BROCHOTHRIX_GROUP 17 seqs
2.30.7.15.1 LIS.MONOCYTOGENES_SUBGROUP 17 seqs
2.30.7.15.1.10462 OTU 1 seq
prokMSA_id:15034 X98526 Listeria grayi ATCC 19120
2.30.7.15.1.1292 OTU 1 seq
prokMSA_id:41555 AJ400262 clone S24-10
2.30.7.15.1.15256 OTU 1 seq
prokMSA_id:16370 Y12757 isolate MB405
2.30.7.15.1.34479 OTU 14 seqs
prokMSA_id:15030 X98529 Listeria ivanovii subsp. londoniensis CLIP 12229
prokMSA_id:15032 S55473 Listeria innocua
prokMSA_id:15037 X98528 Listeria ivanovii subsp. ivanovii str. SLCC 2379 CLIP 12510
prokMSA_id:15039 X98527 Listeria innocua str. SLCC 3379 ATCC 33090
prokMSA_id:15040 X98531 Listeria seeligeri ATCC 35976
prokMSA_id:15042 S55472 Listeria monocytogenes
prokMSA_id:15045 X98530 Listeria monocytogenes str. LL195
prokMSA_id:15046 X98532 Listeria welshimeri str. Welshimer V8 ATCC 35897
prokMSA_id:46413 AL596172 Listeria innocua Clip11262 complete genome segment 10/12
prokMSA_id:49371 AL591983 Listeria monocytogenes strain EGD complete genome segment 11
prokMSA_id:50304 NC_003210 Listeria monocytogenes strain EGD complete genome
prokMSA_id:53366 NC_003212 Listeria innocua Clip11262 complete genome
prokMSA_id:53770 AL591981 Listeria monocytogenes strain EGD complete genome segment 9/
prokMSA_id:54496 AL596170 Listeria innocua Clip11262 complete genome segment 8/12
2.30.7.16 ABIOTROPHIA_GROUP 32 seqs
2.30.7.16.10506 OTU 1 seq
prokMSA_id:15053 Y18053 Facklamia languida str. 1144-97
2.30.7.16.10500 OTU 1 seq
prokMSA_id:15050 Y10772 Facklamia hominis
2.30.7.16.10535 OTU 1 seq
prokMSA_id:15062 Y17820 Facklamia CCUG30090 CCUG 30090
2.30.7.16.10532 OTU 1 seq
prokMSA_id:15060 Y16426 Ignavigranum ruoffiae str. 1607-97 CCUG 37658
2.30.7.16.10537 OTU 1 seq
prokMSA_id:15063 D50541 Abiotrophia defectiva str. SC10 ATCC 49176
2.30.7.16.10565 OTU 1 seq
prokMSA_id:15070 U64456 Aerococcus urinae str. F1-84
2.30.7.16.10568 OTU 1 seq
prokMSA_id:15071 U64457 Aerococcus urinae str. G1-84
2.30.7.16.10533 OTU 1 seq
prokMSA_id:15061 Y17312 Facklamia sourekii
2.30.7.16.10581 OTU 1 seq
prokMSA_id:15076 Y17318 Aerococcus CCUG28826 CCUG 28826
2.30.7.16.15063 OTU 1 seq
prokMSA_id:23513 AJ278341 Aerococcus urinaehominis strain CCUG 42038b
2.30.7.16.16955 OTU 1 seq
prokMSA_id:16600 AJ279038 Aerosphaera taetra strain CCUG 43036T
2.30.7.16.1875 OTU 1 seq
prokMSA_id:42227 AJ277381 Facklamia sp. CCUG 42728 
2.30.7.16.18986 OTU 1 seq
prokMSA_id:48237 AF300974 B16S 
2.30.7.16.19077 OTU 1 seq
prokMSA_id:48276 AJ012666 Streptococcus sp. isolate 2992-95
2.30.7.16.27469 OTU 2 seqs
prokMSA_id:35088 AF318316 Aerococcus rochesterensis 
prokMSA_id:37545 AJ276512 Aerococcus sp. CCUG43001 
2.30.7.16.31400 OTU 3 seqs
prokMSA_id:15051 Y15037 Facklamia 164-92 str. 164-92
prokMSA_id:15052 Y15038 Facklamia 1440-97 str. 1440-97
prokMSA_id:52354 Y15716 Facklamia ignava 
2.30.7.16.32358 OTU 3 seqs
prokMSA_id:15067 AF076639 Aerococcus LV65.5:W1 str. LV65.5:W1
prokMSA_id:15068 D87677 Pediococcus urinaeequi IFO 12173
prokMSA_id:34802 AF317386 feedlot manure B87 
2.30.7.16.32760 OTU 3 seqs
prokMSA_id:15055 Y15408 Abiotrophia sp. str. 2640-91
prokMSA_id:15056 Y15413 Abiotrophia sp. str. 4067-96
prokMSA_id:15057 AB022026 Abiotrophia elegans str. HHC5
2.30.7.16.33365 OTU 3 seqs
prokMSA_id:15058 AB022027 Abiotrophia adiacens str. TKT1
prokMSA_id:15065 D50540 Abiotrophia adiacens str. GaD ATCC 49175
prokMSA_id:70105 AJ312375 Granulicatella adiacens strain 10/833
2.30.7.16.34538 OTU 3 seqs
prokMSA_id:15072 U64458 Aerococcus urinae str. 1656-92
prokMSA_id:15073 U64459 Aerococcus urinae str. 944-94
prokMSA_id:15074 U64460 Aerococcus urinae str. 998-93
2.30.7.16.9825 OTU 1 seq
prokMSA_id:74511 Y17780 Facklamia sp. strain M1832/95/2
2.30.7.17 LACTOBACILLI 295 seqs
2.30.7.17.1 WEI.VIRIDESCENS_SUBGROUP 25 seqs
2.30.7.17.1.1605 OTU 1 seq
prokMSA_id:48808 AY040669 Weissella hanii 
2.30.7.17.1.30347 OTU 3 seqs
prokMSA_id:15087 M23040 Weissella viridescens str. S38A ATCC 12706
prokMSA_id:30631 AB022920 Weissella minor strain:NRIC 1625
prokMSA_id:33970 AB023236 Weissella viridescens strain NRIC 1536
2.30.7.17.1.32426 OTU 8 seqs
prokMSA_id:18129 AF252318 pPD5 
prokMSA_id:19121 AF371480 clone p-2770-24E5 
prokMSA_id:22775 AF312874 Weissella kimchii 
prokMSA_id:22822 AF371481 clone p-2734-24E5 
prokMSA_id:23573 AF477495 Weissella confusa strain PL9001 complete 
prokMSA_id:37266 AB023241 Weissella confusa strain JCM 1093
prokMSA_id:72769 AJ295989 Weissella cibaria strain LMG 17699T
prokMSA_id:76923 AJ422031 Weissella cibaria strain ACA-DC 3411t2
2.30.7.17.1.3309 OTU 1 seq
prokMSA_id:73154 AY028260 Weissella soli complete 
2.30.7.17.1.34541 OTU 7 seqs
prokMSA_id:15083 S67831 Weissella hellenica NCFB 2973
prokMSA_id:15084 AB015642 Weissella hellenica str. DS-12
prokMSA_id:15085 AF086706 Weissella LMG17702 LMG 17702
prokMSA_id:15086 AF086707 Weissella LMG17707 LMG 17707
prokMSA_id:15090 X95981 Weissella hellenica NCFB 2973
prokMSA_id:21108 AB023240 Weissella hellenica strain NRIC 0203
prokMSA_id:45849 AB023238 Weissella paramesenteroides strain NRIC 1542
2.30.7.17.1.42411 OTU 2 seqs
prokMSA_id:63449 AY035892 Weissella koreensis isolate S-5673 
prokMSA_id:63450 AY035891 Weissella koreensis isolate S-5623 
2.30.7.17.1.651 OTU 1 seq
prokMSA_id:64384 AF515221 Weissella kimchii strain RO5 complete 
2.30.7.17.1.8586 OTU 1 seq
prokMSA_id:43687 AB022922 Weissella kandleri strain:NRIC 1628
2.30.7.17.1.9818 OTU 1 seq
prokMSA_id:45087 AB022926 Weissella halotolerans strain:NRIC 1627
2.30.7.17.2 LC.MESENTEROIDES_SUBGROUP 33 seqs
2.30.7.17.2.12338 OTU 1 seq
prokMSA_id:67688 AF360736 Leuconostoc ficulneus 
2.30.7.17.2.12334 OTU 1 seq
prokMSA_id:67685 AF360737 Leuconostoc fructosus 
2.30.7.17.2.28150 OTU 3 seqs
prokMSA_id:16498 AF218797 Leuconostoc fallax 
prokMSA_id:52511 AB023239 Leuconostoc fallax strain NRIC 0210
prokMSA_id:67686 AF360738 Leuconostoc fallax 
2.30.7.17.2.31836 OTU 5 seqs
prokMSA_id:20679 AB054805 Oenococcus oeni strain:95 St.CS-5-1
prokMSA_id:24042 AB054807 Oenococcus oeni strain:95 ASH-5-C-1
prokMSA_id:43771 AB054803 Oenococcus oeni strain:94 CS-3-4
prokMSA_id:43827 AB054806 Oenococcus oeni strain:95 St.Mer-2-4
prokMSA_id:44642 AB054808 Oenococcus oeni strain:95 St.Mer-8-1
2.30.7.17.2.35318 OTU 21 seqs
prokMSA_id:15102 AF175402 Leuconostoc gelidum DSM 5578
prokMSA_id:15103 AB023242 Leuconostoc mesenteroides subsp. mesenteroides NCFB 523
prokMSA_id:15104 AB023243 Leuconostoc mesenteroides subsp. mesenteroides NRIC 1541
prokMSA_id:15105 AB004661 Leuconostoc gelidum JCM 10093
prokMSA_id:15110 AF111948 Leuconostoc citreum str. ; ATCC 49370
prokMSA_id:15112 AF195784 Leuconostoc citreum str. 22R CNRZ 1478
prokMSA_id:15116 AB023968 Leuconostoc lactis JCM 6123
prokMSA_id:15117 AF175403 Leuconostoc argentinum DSM 8581
prokMSA_id:24274 AF231131 Leuconostoc gasicomitatum strain LMG 18811 
prokMSA_id:24435 AB023237 Leuconostoc pseudomesenteroides strain NRIC 1777
prokMSA_id:28880 AF231132 Leuconostoc gasicomitatum strain LMG 18812 
prokMSA_id:33805 AB023246 Leuconostoc mesenteroides strain NRIC 1539
prokMSA_id:41680 AF468002 Leuconostoc pseudomesenteroides 
prokMSA_id:44146 AB022923 Leuconostoc citreum strain:NRIC 1776
prokMSA_id:50225 AB023244 Leuconostoc mesenteroides strain NCFB 529
prokMSA_id:64684 AY117686 Leuconostoc inhae strain IH611 
prokMSA_id:64685 AY117685 Leuconostoc inhae strain IH515 
prokMSA_id:64686 AY117684 Leuconostoc inhae strain IH101 
prokMSA_id:65411 AF439560 Leuconostoc inhae 
prokMSA_id:67809 AF349931 Leuconostoc sp. CR-310S clone crev-3 
prokMSA_id:75964 AY165007 Leuconostoc citreum 
2.30.7.17.2.41090 OTU 2 seqs
prokMSA_id:20790 AB022924 Oenococcus oeni strain:JCM 6125
prokMSA_id:32963 AB054804 Oenococcus oeni strain:95 MBA-6-A-1
2.30.7.17.3 L.DELBRUECKII_SUBGROUP 62 seqs
2.30.7.17.3.11205 OTU 1 seq
prokMSA_id:22336 Y18654 Lactobacillus sp. TV1018 
2.30.7.17.3.11240 OTU 1 seq
prokMSA_id:15133 Y16329 Lactobacillus sp. CCUG 28746
2.30.7.17.3.11225 OTU 1 seq
prokMSA_id:15129 AJ242969 Lactobacillus crispatus NCTC 4
2.30.7.17.3.11224 OTU 1 seq
prokMSA_id:15128 AJ242968 Lactobacillus gallinarum ATCC 33199
2.30.7.17.3.11222 OTU 1 seq
prokMSA_id:15125 Y17361 Lactobacillus amylolyticus str. LA 5 DSM 11664
2.30.7.17.3.11503 OTU 1 seq
prokMSA_id:21782 AJ306298 Lactobacillus hamsteri strain DSM 5661T
2.30.7.17.3.12054 OTU 1 seq
prokMSA_id:22491 AF371473 clone p-2716-65A5 
2.30.7.17.3.13708 OTU 1 seq
prokMSA_id:67818 AF349922 clone 51CR complete 
2.30.7.17.3.14300 OTU 1 seq
prokMSA_id:38470 AF243176 Lactobacillus jensenii strain ATCC25258 
2.30.7.17.3.1587 OTU 1 seq
prokMSA_id:18716 AF371475 clone p-4729-2Wb2 
2.30.7.17.3.17660 OTU 1 seq
prokMSA_id:47438 AY029223 Lactobacillus sp. Y10 
2.30.7.17.3.29098 OTU 2 seqs
prokMSA_id:15130 AF157050 Lactobacillus ASF360 str. ASF 360
prokMSA_id:31066 AJ308390 clone L10-37
2.30.7.17.3.32769 OTU 6 seqs
prokMSA_id:18763 AF243162 Lactobacillus jensenii strain KC44 
prokMSA_id:27140 AF243161 Lactobacillus jensenii strain KC39 
prokMSA_id:31979 AF243143 Lactobacillus jensenii strain BLB1a 
prokMSA_id:35518 AF243159 Lactobacillus jensenii strain KC36b 
prokMSA_id:47914 AF243155 Lactobacillus jensenii strain KC23 
prokMSA_id:51715 AF243153 Lactobacillus jensenii strain KC13 
2.30.7.17.3.34011 OTU 8 seqs
prokMSA_id:15119 AB007908 Lactobacillus delbrueckii subsp. bulgaricus str. Lb.14 JCM 1
prokMSA_id:19801 AF371474 clone p-2370-55G5 
prokMSA_id:24230 AY050172 Lactobacillus delbrueckii subsp. delbrueckii 
prokMSA_id:55673 AF349925 clone 54CR complete 
prokMSA_id:67822 AF349919 clone 37CR complete 
prokMSA_id:70954 AY050171 Lactobacillus delbrueckii subsp. bulgaricus 
prokMSA_id:73747 AY050173 Lactobacillus delbrueckii subsp. lactis 
prokMSA_id:77156 AY165006 Lactobacillus sp. CY1 
2.30.7.17.3.34670 OTU 15 seqs
prokMSA_id:15132 M99704 Lactobacillus acidophilus subsp. johnsonii str. BMF 6Lb6 LAB
prokMSA_id:15135 AJ002515 Lactobacillus johnsonii ATCC 33200
prokMSA_id:16314 AF243144 Lactobacillus gasseri strain BLB1b 
prokMSA_id:16504 AF243165 Lactobacillus gasseri strain KC5a 
prokMSA_id:17132 AF371476 clone p-136-a2 
prokMSA_id:18662 AF371478 clone p-2315-962-2 
prokMSA_id:22892 AF243151 Lactobacillus gasseri strain KC36a 
prokMSA_id:28241 AF371479 clone p-2865-6C5 
prokMSA_id:35597 AF243142 Lactobacillus gasseri strain BLB3 
prokMSA_id:39384 AF243173 Lactobacillus gasseri strain TL33a 
prokMSA_id:48509 AF243157 Lactobacillus gasseri strain KC29 
prokMSA_id:50521 AF243156 Lactobacillus gasseri strain KC26 
prokMSA_id:66613 AY094066 Lactobacillus sp. IDSAc 
prokMSA_id:70466 AF371477 clone p-13-a5 
prokMSA_id:74642 AF519171 Lactobacillus gasseri strain ATCC 33323 complete 
2.30.7.17.3.34877 OTU 13 seqs
prokMSA_id:15127 Y17362 Lactobacillus crispatus DSM 20584
prokMSA_id:16988 AF257097 Lactobacillus crispatus strain ATCC33820 
prokMSA_id:18690 AF243175 Lactobacillus crispatus strain TL39b 
prokMSA_id:21096 AF257096 Lactobacillus crispatus strain ATCC33197 
prokMSA_id:24380 AF243172 Lactobacillus crispatus strain TL25a 
prokMSA_id:26975 AF243152 Lactobacillus crispatus strain KC12a 
prokMSA_id:33386 AF243171 Lactobacillus crispatus strain TL23a 
prokMSA_id:40830 AF243170 Lactobacillus crispatus strain TL13 
prokMSA_id:41700 AF243141 Lactobacillus crispatus strain BLB2 
prokMSA_id:42454 AF243174 Lactobacillus crispatus strain TL35 
prokMSA_id:45385 AF243158 Lactobacillus crispatus strain KC35b 
prokMSA_id:49001 AF243150 Lactobacillus crispatus strain KC12b 
prokMSA_id:49002 AF243169 Lactobacillus crispatus strain KLB79 
2.30.7.17.3.38733 OTU 6 seqs
prokMSA_id:36681 AF371468 clone p-2500-18B5 
prokMSA_id:39660 AF371469 clone p-2488-18B5 
prokMSA_id:40617 AF371470 clone p-1340-a2 
prokMSA_id:45134 AF371471 clone p-2501-18B5 
prokMSA_id:48213 AF371472 clone p-3443-SwA2 
prokMSA_id:61751 AJ417737 Lactobacillus gallinarum and internal transcribed spacer 1 I
2.30.7.17.3.4104 OTU 1 seq
prokMSA_id:43142 AF243163 Lactobacillus sp. KC45a 
2.30.7.17.4 L.REUTERI_SUBGROUP 35 seqs
2.30.7.17.4.14582 OTU 1 seq
prokMSA_id:23477 AJ292530 Lactobacillus colehominis 
2.30.7.17.4.17210 OTU 1 seq
prokMSA_id:76876 T AJ422032 Lactobacillus pontis strain LMG 14187
2.30.7.17.4.24748 OTU 6 seqs
prokMSA_id:40447 AF317703 Lactobacillus sp. G43 
prokMSA_id:40831 AF317704 Lactobacillus sp. G44 
prokMSA_id:44614 AF317702 Lactobacillus sp. G35 
prokMSA_id:52162 AF333975 Lactobacillus sp. KR3 complete 
prokMSA_id:52562 AF308147 Lactobacillus sp. G22 complete 
prokMSA_id:72717 AF308146 Lactobacillus sp. G12 complete 
2.30.7.17.4.31722 OTU 6 seqs
prokMSA_id:15141 AF197126 Lactobacillus G24 str. G24
prokMSA_id:15146 AF126738 Lactobacillus mucosae str. S32
prokMSA_id:18857 AF243145 Lactobacillus mucosae strain BLB1c 
prokMSA_id:41977 AB034098 rumen 3C3d-12 
prokMSA_id:47403 AF243148 Lactobacillus mucosae strain F52 
prokMSA_id:48564 AF371488 clone p-1883-s962-3 
2.30.7.17.4.31824 OTU 6 seqs
prokMSA_id:15140 U62624 Lactobacillus fermentum str. KRM
prokMSA_id:41377 AF243166 Lactobacillus fermentum strain KC5b 
prokMSA_id:44080 AF477499 Lactobacillus fermentum strain PL9006 complete 
prokMSA_id:52471 AF302116 Lactobacillus fermentum complete 
prokMSA_id:67806 AF349935 Lactobacillus sp. CR-6AS clone crev-7 
prokMSA_id:67816 AF349926 clone 60CR complete 
2.30.7.17.4.33902 OTU 11 seqs
prokMSA_id:15143 L23507 Lactobacillus reuteri str. F275 DSM 20016
prokMSA_id:15144 X76328 Lactobacillus reuteri str. F275 DSM 20016
prokMSA_id:15148 X94230 Lactobacillus panis DSM 6035
prokMSA_id:15150 X94229 Lactobacillus oris DSM 4864
prokMSA_id:16684 AF243154 Lactobacillus vaginalis strain KC19 
prokMSA_id:21772 AF243177 Lactobacillus vaginalis strain ATCC49540 
prokMSA_id:22238 AF371485 clone p-3979-6Wa2 
prokMSA_id:35658 AJ250074 Lactobacillus sp. TMW 1.666 strain TMW 1.666
prokMSA_id:35920 AF371483 clone p-2694-65A5 
prokMSA_id:36454 AF371482 clone p-165-a2 
prokMSA_id:49202 AF371484 clone p-3301-23G2 
2.30.7.17.4.42058 OTU 3 seqs
prokMSA_id:15142 X76329 Lactobacillus pontis str. LTH 2587
prokMSA_id:49835 AF371487 clone p-3083-SwA-3 
prokMSA_id:77216 AJ422033 Lactobacillus pontis strain LMG 14188
2.30.7.17.4.5610 OTU 1 seq
prokMSA_id:49917 AF371486 clone p-4312-4Wa3 
2.30.7.17.5 PED.PENTOSACEUS_SUBGROUP 17 seqs
2.30.7.17.5.17508 OTU 1 seq
prokMSA_id:17309 AF371490 clone p-2984-9F2 
2.30.7.17.5.42279 OTU 3 seqs
prokMSA_id:15153 D88528 Pediococcus parvulus str. S182 JCM 5889
prokMSA_id:19307 AJ271383 Pediococcus inopinatus strain DSM 20285
prokMSA_id:39325 AJ318414 Pediococcus damnosus strain DSM 20331
2.30.7.17.5.42871 OTU 11 seqs
prokMSA_id:15151 M58834 Pediococcus pentosaceus ATCC 33316
prokMSA_id:15152 AB018215 Pediococcus pentosaceus str. LS 5
prokMSA_id:15156 AB018213 Pediococcus acidilactici str. LA 3
prokMSA_id:15157 AB018214 Pediococcus acidilactici str. LA 35
prokMSA_id:38120 AJ305321 Pediococcus pentosaceus strain DSM 20336 
prokMSA_id:40870 AJ305322 Pediococcus acidilactici strain B1104
prokMSA_id:44357 AJ305320 Pediococcus acidilactici strain DSM 20284 
prokMSA_id:56137 AF515227 Pediococcus pentosaceus strain RO95 complete 
prokMSA_id:56475 AF515229 Pediococcus acidilactici strain RO17 complete 
prokMSA_id:66562 AJ487025 amplicon L1
prokMSA_id:67805 AF349938 Pediococcus sp. CR-6S clone crev-10 
2.30.7.17.5.7085 OTU 1 seq
prokMSA_id:27815 AB018212 Pediococcus acidilactici strain E 7
2.30.7.17.5.8627 OTU 1 seq
prokMSA_id:66561 AJ487026 amplicon L2
2.30.7.17.6 L.PLANTARUM_SUBGROUP 46 seqs
2.30.7.17.6.11227 OTU 1 seq
prokMSA_id:52430 AF371501 clone p-2956-9F2 
2.30.7.17.6.14114 OTU 1 seq
prokMSA_id:76371 AJ422034 Lactobacillus paralimentarius strain ACA-DC 3363
2.30.7.17.6.15503 OTU 1 seq
prokMSA_id:75967 AJ422039 Lactobacillus brevis strain ACA-DC 3411t1
2.30.7.17.6.15671 OTU 1 seq
prokMSA_id:24271 AF371491 clone p-2626-9F5 
2.30.7.17.6.17189 OTU 1 seq
prokMSA_id:38908 AF371492 clone p-2945-9F2 
2.30.7.17.6.20582 OTU 1 seq
prokMSA_id:62877 AJ496791 Lactobacillus versmoldensis strain KU-3T
2.30.7.17.6.2175 OTU 1 seq
prokMSA_id:27265 AF371495 clone p-2988-9F2 
2.30.7.17.6.2993 OTU 1 seq
prokMSA_id:26722 AF371494 clone p-2960-9F2 
2.30.7.17.6.31635 OTU 4 seqs
prokMSA_id:24802 AF183558 Lactobacillus kimchii 
prokMSA_id:58041 AJ313530 Lactobacillus sp. TMW 1.80 strain TMW 1.80
prokMSA_id:70330 AJ417500 Lactobacillus paralimentarius strain DSM 13238
prokMSA_id:70957 AJ417499 Lactobacillus farciminis strain DSM 20185
2.30.7.17.6.31800 OTU 17 seqs
prokMSA_id:15159 D79211 Lactobacillus pentosus JCM 1588
prokMSA_id:15161 D79210 Lactobacillus plantarum JCM 1149
prokMSA_id:15163 M58827 Lactobacillus plantarum str. 17-5 ATCC 8014
prokMSA_id:31888 AJ306297 Lactobacillus paraplantarum strain DSM 10667T
prokMSA_id:46388 AB070610 Lactobacillus B5407 
prokMSA_id:48381 AF371493 clone p-3000-9F2 
prokMSA_id:64381 AF515222 Lactobacillus plantarum strain RO7 complete 
prokMSA_id:64526 AF516755 Lactobacillus sp. MR-2 
prokMSA_id:64527 AF516754 Lactobacillus sp. MR-1 
prokMSA_id:67804 AF349936 Lactobacillus sp. CR-7AS clone crev-8 
prokMSA_id:73879 AJ272031 Lactobacillus plantarum strain HSW36
prokMSA_id:79835 AL935253 Lactobacillus plantarum strain WCFS1 complete genome; segmen
prokMSA_id:80353 NC_004567 Lactobacillus plantarum WCFS1 complete genome
prokMSA_id:80366 AL935261 Lactobacillus plantarum strain WCFS1 complete genome; segmen
prokMSA_id:80507 AL935258 Lactobacillus plantarum strain WCFS1 complete genome; segmen
prokMSA_id:80613 AL935255 Lactobacillus plantarum strain WCFS1 complete genome; segmen
prokMSA_id:80844 AL935260 Lactobacillus plantarum strain WCFS1 complete genome; segmen
2.30.7.17.6.32541 OTU 2 seqs
prokMSA_id:15164 AB005893 Lactobacillus collinoides JCM 1123
prokMSA_id:38883 E16651 Lactobacillus sp. AB No.74 
2.30.7.17.6.32847 OTU 10 seqs
prokMSA_id:15170 M58810 Lactobacillus brevis ATCC 14869
prokMSA_id:15171 AB024299 Lactobacillus brevis NRIC 1684
prokMSA_id:15172 AF090328 Lactobacillus brevis str. K9
prokMSA_id:15173 D37785 Lactobacillus brevis str. Lactobacillus brevis L63
prokMSA_id:16554 AB070606 Lactobacillus brevis strain:B4101
prokMSA_id:17965 AB070611 Lactobacillus brevis strain:B5501
prokMSA_id:40052 AB070608 Lactobacillus brevis strain:B5401
prokMSA_id:48588 AB070607 Lactobacillus brevis strain:B5201
prokMSA_id:64387 AF515220 Lactobacillus brevis strain RO66 complete 
prokMSA_id:64389 AF515219 Lactobacillus brevis strain RO97 complete 
2.30.7.17.6.42614 OTU 2 seqs
prokMSA_id:76191 AJ422035 Lactobacillus paralimentarius strain ACA-DC 3413
prokMSA_id:76249 AJ422036 Lactobacillus paralimentarius strain ACA-DC 3415
2.30.7.17.6.6503 OTU 1 seq
prokMSA_id:74107 AJ315640 Lactobacillus durianis strain LMG 19193
2.30.7.17.6.666 OTU 1 seq
prokMSA_id:56512 AJ417738 Lactobacillus letivazi 23S and internal transcribed spacer 1
2.30.7.17.6.6787 OTU 1 seq
prokMSA_id:29013 AF371496 clone p-2963-9F2 
2.30.7.17.7 L.SANFRANCISCENSIS_SUBGROUP 17 seqs
2.30.7.17.7.10836 OTU 1 seq
prokMSA_id:44586 AF445731 clone SM2F09 
2.30.7.17.7.11341 OTU 1 seq
prokMSA_id:15179 Y11374 Lactobacillus sp. str. YH-15
2.30.7.17.7.11396 OTU 1 seq
prokMSA_id:15190 X76330 Lactobacillus fructivorans DSM 20203
2.30.7.17.7.29479 OTU 2 seqs
prokMSA_id:26176 AF408267 Lactobacillus sp. clone KL-11-1-6 
prokMSA_id:74576 AF408266 Lactobacillus sp. clone KL-111-2-6 
2.30.7.17.7.31588 OTU 3 seqs
prokMSA_id:15176 X76331 Lactobacillus sanfranciscensis DSM 20663
prokMSA_id:15189 X76327 Lactobacillus sanfranciscensis str. Kline L-2 ATCC 27651
prokMSA_id:76839 AJ422037 Lactobacillus sanfranciscensis strain C57
2.30.7.17.7.31801 OTU 4 seqs
prokMSA_id:15191 X95421 Lactobacillus lindneri str. KPA DSM 20690
prokMSA_id:15192 X95422 Lactobacillus lindneri str. L2
prokMSA_id:15193 X95423 Lactobacillus lindneri str. LTH 2505
prokMSA_id:15194 D37784 Lactobacillus lindneri str. DA1
2.30.7.17.7.39867 OTU 5 seqs
prokMSA_id:15178 AB024300 Lactobacillus kefiri NRIC 1693
prokMSA_id:26241 AF264701 Lactobacillus sp. JKD6 complete 
prokMSA_id:30670 AY026750 Lactobacillus parakefiri 
prokMSA_id:33139 AF275311 Lactobacillus ferintoshensis 
prokMSA_id:38705 AY026752 Lactobacillus sp. ACD7 
2.30.7.17.8 L.MALI_SUBGROUP 19 seqs
2.30.7.17.8.11409 OTU 1 seq
prokMSA_id:15196 AB016864 Lactobacillus sp
2.30.7.17.8.11892 OTU 1 seq
prokMSA_id:15202 AF197125 Lactobacillus C33LV5 str. C33LV5
2.30.7.17.8.11895 OTU 1 seq
prokMSA_id:15206 AF049743 Lactobacillus LMG17676 LMG 17676
2.30.7.17.8.28756 OTU 2 seqs
prokMSA_id:30219 AF371499 clone p-3424-SwA2 
prokMSA_id:48534 AB034090 rumen 5C3d-14 
2.30.7.17.8.28855 OTU 3 seqs
prokMSA_id:15200 AF157049 Lactobacillus murinus str. ASF 361
prokMSA_id:22999 AJ308393 clone S25-9
prokMSA_id:24547 AF371500 clone p-487-o2 
2.30.7.17.8.3199 OTU 1 seq
prokMSA_id:18965 AJ251560 Lactobacillus sp. LMK3 strain LMK3
2.30.7.17.8.33362 OTU 2 seqs
prokMSA_id:15208 AB001836 Lactobacillus aviarius 
prokMSA_id:15209 AB001837 Lactobacillus aviarius 
2.30.7.17.8.41417 OTU 2 seqs
prokMSA_id:48374 AF371497 clone p-4323-4Wa3 
prokMSA_id:64741 AY112743 Lactobacillus salivarius subsp. salivarius complete 
2.30.7.17.8.41772 OTU 4 seqs
prokMSA_id:35499 AF420311 Lactobacillus salivarius 
prokMSA_id:62010 AY137589 Lactobacillus salivarius subsp. salicinius strain JCM 1230 
prokMSA_id:62011 AY137587 Lactobacillus salivarius subsp. salicinius strain JCM 1046 
prokMSA_id:62012 AY137588 Lactobacillus salivarius subsp. salicinius strain JCM 1047 
2.30.7.17.8.5797 OTU 1 seq
prokMSA_id:74053 AB048833 Lactobacillus equi 
2.30.7.17.8.9369 OTU 1 seq
prokMSA_id:50977 AF316585 Lactobacillus sp. YE06 
2.30.7.17.9 L.CASEI_SUBGROUP 28 seqs
2.30.7.17.9.11926 OTU 1 seq
prokMSA_id:15222 AJ132757 Lactobacillus LM-17 str. LM-17
2.30.7.17.9.12445 OTU 1 seq
prokMSA_id:46006 AF371502 clone p-2923-9F2 
2.30.7.17.9.20119 OTU 1 seq
prokMSA_id:39949 AF413523 Lactobacillus pantheri complete 
2.30.7.17.9.2039 OTU 1 seq
prokMSA_id:35081 AF371503 clone p-2594-9F5 
2.30.7.17.9.29211 OTU 2 seqs
prokMSA_id:15211 AF000162 Lactobacillus manihotivorans str. OND 32 LMG 18010
prokMSA_id:15212 AF000163 Lactobacillus manihotivorans str. YAM I LMG 18011
2.30.7.17.9.40928 OTU 21 seqs
prokMSA_id:15214 D16552 Lactobacillus rhamnosus JCM 1136
prokMSA_id:15215 D16551 Lactobacillus casei subsp. casei JCM 1134
prokMSA_id:15216 D86518 Lactobacillus casei str. = JCM 8129
prokMSA_id:15218 M23928 Lactobacillus casei subsp. casei ATCC 393
prokMSA_id:15219 D86516 Lactobacillus zeae ATCC 15820
prokMSA_id:15221 D79212 Lactobacillus paracasei subsp. paracasei JCM 8130
prokMSA_id:15223 D16548 Lactobacillus paracasei subsp. paracasei JCM 1133
prokMSA_id:15224 D16549 Lactobacillus paracasei subsp. paracasei JCM 1181
prokMSA_id:19371 AB070609 Lactobacillus B5406 
prokMSA_id:20863 AF243147 Lactobacillus paracasei subsp. paracasei strain F31 
prokMSA_id:21135 AF306539 Lactobacillus sp. P8 
prokMSA_id:27334 AF385770 Lactobacillus casei strain BL23 
prokMSA_id:33166 AJ272201 Lactobacillus casei subsp. casei strain UK 318
prokMSA_id:46704 D86517 Lactobacillus casei 
prokMSA_id:48136 AF243146 Lactobacillus rhamnosus strain F11 
prokMSA_id:50029 AF243168 Lactobacillus paracasei subsp. paracasei strain KLB58 
prokMSA_id:56018 AF349937 Lactobacillus sp. CR-609S clone crev-9 
prokMSA_id:67359 AY091596 Lactobacillus casei strain KH-1 
prokMSA_id:70438 AJ271854 Lactobacillus paracasei strain UK179
prokMSA_id:77533 AF526388 Lactobacillus casei 
prokMSA_id:79380 AF469172 Lactobacillus casei strain ATCC 393 
2.30.7.17.9.9336 OTU 1 seq
prokMSA_id:66614 AY094065 Lactobacillus sp. IDLAc 
2.30.7.17.10 L.BIFERMENTANS_SUBGROUP 1 seq
2.30.7.17.10.1106 OTU 1 seq
prokMSA_id:72216 AF316586 Lactobacillus sp. YE07 
2.30.7.17.11 L.PEROLENS_SUBGROUP 7 seqs
2.30.7.17.11.11934 OTU 1 seq
prokMSA_id:15229 D87679 Pediococcus dextrinicus str. L95 JCM 5887
2.30.7.17.11.11944 OTU 1 seq
prokMSA_id:15230 AF049745 Lactobacillus LMG17710 LMG 17710
2.30.7.17.11.12346 OTU 1 seq
prokMSA_id:36943 AB033209 Lactobacillus algidus 
2.30.7.17.11.34581 OTU 4 seqs
prokMSA_id:15232 Y19167 Lactobacillus perolens str. L532
prokMSA_id:15233 Y19168 Lactobacillus perolens str. L534
prokMSA_id:15234 AB005739 Lactobacillus sp. str. LA-6
prokMSA_id:36168 E17066 Lactobacillus sp. AB No.434 
2.30.7.17.12 L.SAKEISAK_SUBGROUP 5 seqs
2.30.7.17.12.21179 OTU 1 seq
prokMSA_id:49102 AB063479 Lactobacillus fuchuensis 
2.30.7.17.12.41768 OTU 3 seqs
prokMSA_id:15236 D16553 Lactobacillus casei subsp. fusiformis str. = JCM 1177
prokMSA_id:81991 AY204892 Lactobacillus sakei subsp. carnosus strain CCUG 31331 
prokMSA_id:82312 AY204896 Lactobacillus sakei strain HNSL5a 
2.30.7.17.12.5481 OTU 1 seq
prokMSA_id:27633 AF401673 Lactobacillus sakei operon and rrnB operon 
2.30.7.18 CARNOBACTERIUM_GROUP 49 seqs
2.30.7.18.1 AIC.OTITIS_SUBGROUP 3 seqs
2.30.7.18.1.11952 OTU 1 seq
prokMSA_id:15238 AF124033 unnamed organism
2.30.7.18.1.11951 OTU 1 seq
prokMSA_id:15237 X59765 Alloiococcus otitis NCFB 2890
2.30.7.18.1.11966 OTU 1 seq
prokMSA_id:15241 X70907 Dolosigranulum pigrum str. R91/1468 NCFB 2975
2.30.7.18.2 CRN.DIVERGENS_SUBGROUP 45 seqs
2.30.7.18.2.11972 OTU 1 seq
prokMSA_id:15245 AF061558 Carnobacterium St2 str. St2
2.30.7.18.2.11969 OTU 1 seq
prokMSA_id:15243 S86170 Carnobacterium funditum str. pf3 DSM 5970
2.30.7.18.2.12013 OTU 1 seq
prokMSA_id:15260 AF076637 Carnobacterium LV62:W1 str. LV62:W1
2.30.7.18.2.11996 OTU 1 seq
prokMSA_id:15259 Y17300 Desemzia incerta DSM 20581
2.30.7.18.2.13865 OTU 1 seq
prokMSA_id:29998 AF255736 Nostocoida limicola I 
2.30.7.18.2.14383 OTU 1 seq
prokMSA_id:37875 AF275702 Hailaer soda lake F24 
2.30.7.18.2.19454 OTU 1 seq
prokMSA_id:69980 AY005049 Firmicutes sp. oral clone BX005 
2.30.7.18.2.20372 OTU 1 seq
prokMSA_id:56246 AB083414 Carnobacterium mobile strain:DSM 4848
2.30.7.18.2.2475 OTU 1 seq
prokMSA_id:48912 AF371533 clone p-2073-s959-2 
2.30.7.18.2.31516 OTU 2 seqs
prokMSA_id:43119 AJ271861 Granulicatella sp. M658/99/3 
prokMSA_id:43965 Y16546 Atopobacter phocae strain m1590/94/2
2.30.7.18.2.33336 OTU 5 seqs
prokMSA_id:15251 AF143511 Alkalibacterium olivoapovliticus strain WW2-SN4a 
prokMSA_id:15252 AF143512 Alkalibacterium olivoapovliticus strain WW2-SN4c 
prokMSA_id:15253 AF143513 Alkalibacterium olivoapovliticus strain WW2-SN5 
prokMSA_id:36593 AF275700 Hailaer soda lake F1 
prokMSA_id:47180 AF275703 Hailaer soda lake F27 
2.30.7.18.2.34001 OTU 3 seqs
prokMSA_id:16452 AJ387905 Carnobacterium gallinarum strain DSM 4847
prokMSA_id:22650 AF451271 Carnobacterium sp. D35 
prokMSA_id:36062 AF184247 Carnobacterium piscicola 
2.30.7.18.2.34259 OTU 5 seqs
prokMSA_id:15257 L08623 Carnobacterium alterfunditum ACAM 311
prokMSA_id:15258 Z73313 Carnobacterium sp. str. K1
prokMSA_id:15261 AF113133 Carnobacterium Y6 str. Y6
prokMSA_id:19355 AF425608 Carnobacterium viridans 
prokMSA_id:44929 AF450136 Carnobacterium sp. FTR-1 
2.30.7.18.2.36650 OTU 10 seqs
prokMSA_id:15246 L76599 Lactosphaera pasteurii str. KoTa2 ATCC 35945
prokMSA_id:15250 X87150 Lactosphaera pasteurii str. KoTa2 DSM 2381
prokMSA_id:15254 Y17301 Trichococcus flocculiformis DSM 2094
prokMSA_id:28044 AF394926 Lactosphaera sp. PMagG1 
prokMSA_id:34045 AJ296179 Ruminococcus palustris strain DSM 9172T
prokMSA_id:47450 AF244372 Nostocoida limicola I strain Ben201 
prokMSA_id:47658 AJ306612 Trichococcus collinsii strain 37AN3
prokMSA_id:66180 AJ488083 clone IIA-2
prokMSA_id:66187 AJ488077 clone IB-11
prokMSA_id:77290 AJ535705 Trichococcus sp. Coc4 strain Coc4
2.30.7.18.2.42484 OTU 9 seqs
prokMSA_id:55874 AB083411 Marinolactobacillus psychrotolerans strain:M13-7
prokMSA_id:61165 AB083413 Marinolactobacillus psychrotolerans strain:O21
prokMSA_id:61166 AB083412 Marinolactobacillus psychrotolerans strain:O1-1
prokMSA_id:61167 AB083410 Marinolactobacillus psychrotolerans strain:M13-6
prokMSA_id:61168 AB083409 Marinolactobacillus psychrotolerans strain:M13-5
prokMSA_id:61171 AB083407 Marinolactobacillus psychrotolerans strain:M13-3
prokMSA_id:61172 AB083408 Marinolactobacillus psychrotolerans strain:M13-4
prokMSA_id:61173 AB083406 Marinolactobacillus psychrotolerans strain:M13-2
prokMSA_id:78803 AB094468 Marinolactobacillus sp. MJYP.25.24 
2.30.7.18.2.662 OTU 1 seq
prokMSA_id:27088 X92169 sp. Lake Nakuru isolate WN16
2.30.7.18.2.9281 OTU 1 seq
prokMSA_id:73819 AF317369 feedlot manure B32 
2.30.7.18.3 DSZ.INCERTA_SUBGROUP 1 seq
2.30.7.18.3.12024 OTU 1 seq
prokMSA_id:15266 Y14650 Desemzia incerta DSM 20581
2.30.7.20 ENTEROCOCCUS_GROUP 125 seqs
2.30.7.20.10641 OTU 1 seq
prokMSA_id:52399 AF317373 feedlot manure B5 
2.30.7.20.11378 OTU 1 seq
prokMSA_id:51831 AJ243326 Vagococcus fessus strain m2661/98/1
2.30.7.20.12056 OTU 1 seq
prokMSA_id:15276 Y17152 Vagococcus CCUG39187 str. m1134/97/1 CCUG 39187
2.30.7.20.12492 OTU 1 seq
prokMSA_id:76127 AY167946 Swine manure RT-5D 
2.30.7.20.12936 OTU 1 seq
prokMSA_id:37654 AF395325 isopod gut clone RKPsBA 
2.30.7.20.13799 OTU 1 seq
prokMSA_id:37798 AJ301827 Enterococcus cecorum strain LMG 12902
2.30.7.20.14955 OTU 1 seq
prokMSA_id:75898 AY167933 Swine manure RT-2A 
2.30.7.20.1667 OTU 1 seq
prokMSA_id:78915 AY179329 Vagococcus carniphilus 
2.30.7.20.1702 OTU 1 seq
prokMSA_id:25976 AB018210 Enterococcus faecium strain E 26
2.30.7.20.26607 OTU 2 seqs
prokMSA_id:15297 Y18275 Enterococcus columbae NCFB 13013
prokMSA_id:17976 AJ301828 Enterococcus columbae strain LMG 11740
2.30.7.20.32850 OTU 3 seqs
prokMSA_id:15284 X75752 Melissococcus pluton str. M40P NCDO 2440
prokMSA_id:15336 X75751 Melissococcus pluton str. M43P NCDO 2443
prokMSA_id:37420 AJ301842 Melissococcus pluton strain LTH 3442
2.30.7.20.3912 OTU 1 seq
prokMSA_id:20210 AJ302648 Isobaculum melis isolate CCUG 37660T
2.30.7.20.39495 OTU 15 seqs
prokMSA_id:15313 AF061002 Enterococcus pseudoavium ATCC 49372
prokMSA_id:15314 AF061003 Enterococcus raffinosus str. Mayo Clinic laboratory strain
prokMSA_id:15317 AF061008 Enterococcus avium str. Mayo Clinic laboratory strain
prokMSA_id:15319 AF061012 Enterococcus malodoratus ATCC 43197
prokMSA_id:15324 Y18296 Enterococcus raffinosus NCIMB 12901
prokMSA_id:15325 Y18339 Enterococcus malodoratus NCFB 846
prokMSA_id:15328 Y18356 Enterococcus pseudoavium NCFB 2138
prokMSA_id:15332 Y18274 Enterococcus avium NCFB 2369
prokMSA_id:20443 AJ301838 Enterococcus raffinosus strain LMG 12999
prokMSA_id:45325 AJ301825 Enterococcus avium strain LMG 10744
prokMSA_id:50668 AF133535 Enterococcus avium 
prokMSA_id:53470 AJ301841 Enterococcus sulfureus strain LMG 13084
prokMSA_id:67807 AF349934 Enterococcus sp. CR-3 clone crev-6 
prokMSA_id:67867 AY033815 Enterococcus pallens 
prokMSA_id:67869 AY033814 Enterococcus gilvus 
2.30.7.20.40720 OTU 3 seqs
prokMSA_id:15279 AF061009 Enterococcus cecorum ATCC 43198
prokMSA_id:15280 Y18355 Enterococcus cecorum NCDO 2674
prokMSA_id:48901 AF357562 mpn-isolate group 14 
2.30.7.20.40859 OTU 28 seqs
prokMSA_id:15286 AB012213 Enterococcus faecium JCM 5804
prokMSA_id:15287 AF070223 Enterococcus faecium str. GUCR
prokMSA_id:15288 AF145258 Enterococcus faecium str. 71380
prokMSA_id:15289 AF039901 Enterococcus faecium
prokMSA_id:15290 Y18294 Enterococcus faecium NCFB 942
prokMSA_id:15302 AB015233 Enterococcus sp. str. GvF410
prokMSA_id:15311 Y17302 Enterococcus hirae DSM 20160
prokMSA_id:15312 AF061000 Enterococcus durans ATCC 59607
prokMSA_id:15318 AF061011 Enterococcus hirae ATCC 8043
prokMSA_id:15331 Y18359 Enterococcus durans NCFB 596
prokMSA_id:18966 AF357561 mpn-isolate group 13 
prokMSA_id:21403 AJ309563 Enterococcus azikeevi strain IB-A35
prokMSA_id:32550 AF371532 clone p-1938-s962-3 
prokMSA_id:35969 AF395326 isopod gut clone RKPsAG 
prokMSA_id:37425 AJ291732 Enterococcus faecium strain WI107
prokMSA_id:37447 AJ301834 Enterococcus hirae strain LMG 6399
prokMSA_id:39621 AJ301830 Enterococcus faecium strain LMG 11423
prokMSA_id:40247 AJ291731 Enterococcus faecium strain WI49
prokMSA_id:40545 AJ301837 Enterococcus pseudoavium strain LMG 11426
prokMSA_id:45428 AJ420799 Enterococcus hirae strain CECT279T
prokMSA_id:47702 AJ276354 Enterococcus durans strain DSM20633
prokMSA_id:49707 AY057055 Enterococcus faecium 
prokMSA_id:50018 AJ420800 Enterococcus faecium strain CECT410T
prokMSA_id:51948 AF371531 clone p-2526-18B5 
prokMSA_id:72595 AY098492 Enterococcus sp. AK61 
prokMSA_id:73318 AJ271856 Enterococcus faecalis strain UK873
prokMSA_id:74720 AJ276356 Enterococcus hirae strain DSM20160
prokMSA_id:76721 AY172570 Enterococcus faecium complete 
2.30.7.20.41345 OTU 61 seqs
prokMSA_id:15272 AB012212 Enterococcus faecalis str. JCM 5803
prokMSA_id:15273 AF070224 Enterococcus faecalis str. JH2-2
prokMSA_id:15274 AF039902 Enterococcus faecalis
prokMSA_id:15275 Y18293 Enterococcus faecalis
prokMSA_id:15285 X76177 Enterococcus sp. LMG 12316
prokMSA_id:15298 Y11621 Enterococcus asini str. AS2 DSM 11492
prokMSA_id:15307 AF039898 Enterococcus gallinarum str. 42
prokMSA_id:15308 AF039899 Enterococcus casseliflavus str. 32
prokMSA_id:15309 AF039900 Enterococcus gallinarum
prokMSA_id:15310 AF039903 Enterococcus casseliflavus
prokMSA_id:15315 AF061004 Enterococcus saccharolyticus ATCC 43076
prokMSA_id:15316 AF061007 Enterococcus dispar ATCC 51266
prokMSA_id:15320 AF061013 Enterococcus mundtii ATCC 43186
prokMSA_id:15321 Y18160 Enterococcus gallinarum NCFB 2314
prokMSA_id:15322 Y18161 Enterococcus casseliflavus NCIMB 11449
prokMSA_id:15323 Y18295 Enterococcus flavescens NCIMB 13226
prokMSA_id:15326 Y18340 Enterococcus mundtii NCFB 2375
prokMSA_id:15329 Y18357 Enterococcus saccharolyticus NCDO 2594
prokMSA_id:15330 Y18358 Enterococcus dispar NCIMB 13000
prokMSA_id:16425 AF277567 Enterococcus gallinarum 
prokMSA_id:17444 AJ301829 Enterococcus dispar strain LMG 13521
prokMSA_id:19924 AJ420805 Enterococcus gallinarum strain CECT970T
prokMSA_id:22749 AJ276462 Enterococcus sp. P7644 strain P7644
prokMSA_id:26643 AF447490 Enterococcus faecalis 
prokMSA_id:28186 AF286832 Enterococcus haemoperoxidus 
prokMSA_id:28797 AJ301832 Enterococcus flavescens strain LMG 13518
prokMSA_id:29590 AB036835 Enterococcus faecalis complete 
prokMSA_id:29774 AF135452 sp. 1275b 
prokMSA_id:30497 AJ276352 Enterococcus rottae strain CCM4629
prokMSA_id:31938 AF477496 Enterococcus faecalis strain PL9003 complete 
prokMSA_id:35549 AJ276461 Enterococcus sp. P8403 strain P8403
prokMSA_id:37079 AF367977 Enterococcus casseliflavus CCM 4869 
prokMSA_id:38180 AJ276353 Enterococcus sp. CCM4630 
prokMSA_id:40693 AJ301831 Enterococcus faecalis strain LMG 7937
prokMSA_id:42419 AJ420804 Enterococcus casseliflavus strain CECT969T
prokMSA_id:43140 AJ301833 Enterococcus gallinarum strain LMG 13129
prokMSA_id:43998 AJ301839 Enterococcus saccharolyticus strain LMG 11427
prokMSA_id:44126 AJ301826 Enterococcus casseliflavus strain LMG 10745
prokMSA_id:44890 AJ420806 Enterococcus mundtii strain CECT972T
prokMSA_id:45618 AJ420802 Enterococcus flavescens strain CECT4481T
prokMSA_id:50297 AJ276460 Enterococcus faecalis strain P7812
prokMSA_id:57509 AF326472 Enterococcus ratti 
prokMSA_id:58583 AB092693 Enterococcus faecalis complete 
prokMSA_id:60256 AF539705 Enterococcus ratti 
prokMSA_id:62639 E AJ459875 clone
prokMSA_id:62895 AB066266 Enterococcus mundtii 
prokMSA_id:62987 AF526922 Enterococcus sp. clone T8-20 rrn 
prokMSA_id:64383 AF515223 Enterococcus faecalis strain RO90 complete 
prokMSA_id:67810 AF349930 Enterococcus sp. CR-303S clone crev-2 
prokMSA_id:67813 AF349929 Enterococcus sp. CR-300S clone crev-1 
prokMSA_id:70378 AF286831 Enterococcus moraviensis 
prokMSA_id:72148 AY028437 Enterococcus phoeniculicola 
prokMSA_id:72178 AJ271329 Enterococcus villorum strain LMG 12287
prokMSA_id:73484 AF367978 Enterococcus casseliflavus CCM 4870 
prokMSA_id:73978 AJ133478 Enterococcus sp. isolate RfL6
prokMSA_id:74133 AJ272200 Enterococcus hirae strain UK 877
prokMSA_id:74276 AF335596 Enterococcus villorum 
prokMSA_id:74813 AJ301836 Enterococcus mundtii strain LMG 10748
prokMSA_id:75570 AY167960 Swine manure RT-21 
prokMSA_id:75810 AY167958 Swine manure RT-19B 
prokMSA_id:76134 AB098122 Enterococcus faecalis 
2.30.7.20.42334 OTU 2 seqs
prokMSA_id:15301 U30931 Enterococcus saccharolyticus
prokMSA_id:48898 AJ301835 Enterococcus malodoratus strain LMG 10747
2.30.7.20.5764 OTU 1 seq
prokMSA_id:20438 AB062833 clone:BCf6-17
2.30.7.21 STREPTOCOCCI 339 seqs
2.30.7.21.1 LCC.LACTIS_SUBGROUP 28 seqs
2.30.7.21.1.16771 OTU 1 seq
prokMSA_id:78015 AB089063 Lactococcus sp. clone:Rs-C68
2.30.7.21.1.18267 OTU 1 seq
prokMSA_id:78223 AB089061 Lactococcus sp. clone:Rs-B70
2.30.7.21.1.31815 OTU 9 seqs
prokMSA_id:15348 AB012306 Lactococcus garvieae JCM 8735
prokMSA_id:19276 AF352164 Lactococcus garvieae strain FLG4 
prokMSA_id:28491 AF352163 Lactococcus garvieae strain FLG2 
prokMSA_id:31382 AF352166 Lactococcus garvieae strain FLG12 
prokMSA_id:36458 AF061005 Enterococcus seriolicida 
prokMSA_id:44780 AB079369 Enterococcus sp. U1-1 
prokMSA_id:45250 AF283499 Lactococcus garvieae complete 
prokMSA_id:45788 AB079371 Enterococcus sp. U5-1 
prokMSA_id:48070 AF352165 Lactococcus garvieae strain FLG5 
2.30.7.21.1.32830 OTU 16 seqs
prokMSA_id:15343 X64887 Lactococcus lactis str. IL 1403
prokMSA_id:30402 AF408259 Lactococcus sp. clone KL-86-2-7 
prokMSA_id:48928 AE005176 Lactococcus lactis subsp. lactis IL1403 complete genome
prokMSA_id:54615 NC_002662 Lactococcus lactis subsp. lactis complete genome
prokMSA_id:58588 AB083092 Lactococcus lactis subsp. lactis 
prokMSA_id:64379 AF515224 Lactococcus lactis subsp. lactis strain RO6 complete 
prokMSA_id:64380 AF515226 Lactococcus lactis subsp. lactis strain RO37 complete 
prokMSA_id:64382 AF515225 Lactococcus lactis subsp. lactis strain RO3 complete 
prokMSA_id:66046 AJ488176 Lactococcus lactis strain 04
prokMSA_id:66047 AJ488175 Lactococcus lactis strain MRS5
prokMSA_id:66048 AJ488174 Lactococcus lactis strain MRS2
prokMSA_id:66049 AJ488173 Lactococcus lactis strain MRS1
prokMSA_id:66568 F AJ487019 amplicon
prokMSA_id:69977 AJ271851 Lactococcus lactis and internal transcribed spacer 1 ITS1 st
prokMSA_id:75483 AY167937 Swine manure RT-3A 
prokMSA_id:75681 AY167948 Swine manure RT-6B 
2.30.7.21.1.7728 OTU 1 seq
prokMSA_id:42931 AB018211 Lactococcus garvieae strain E 1
2.30.7.21.2 STC.EQUI_SUBGROUP 3 seqs
2.30.7.21.2.12607 OTU 1 seq
prokMSA_id:15355 AB002516 Streptococcus equi subsp. zooepidemicus str. S 34 ATCC 43079
2.30.7.21.2.12605 OTU 1 seq
prokMSA_id:15354 AB002515 Streptococcus equi subsp. equi ATCC 33398
2.30.7.21.2.7450 OTU 1 seq
prokMSA_id:81475 AB104843 Streptococcus equi subsp. zooepidemicus strain:Tokyo1291
2.30.7.21.3 STC.PYOGENES_SUBGROUP 113 seqs
2.30.7.21.3.12714 OTU 1 seq
prokMSA_id:15387 U87830 clone v6
2.30.7.21.3.13433 OTU 1 seq
prokMSA_id:22640 AF124350 Streptococcus orisratti 
2.30.7.21.3.13410 OTU 1 seq
prokMSA_id:15419 AB002521 Streptococcus pyogenes str. T1 ATCC 12344
2.30.7.21.3.24092 OTU 25 seqs
prokMSA_id:15370 AB023575 Streptococcus pyogenes JCM 5674
prokMSA_id:44359 NC_002737 Streptococcus pyogenes complete genome
prokMSA_id:45642 AE006496 Streptococcus pyogenes M1 GAS strain SF370 section 25 of 167
prokMSA_id:46458 AE006615 Streptococcus pyogenes M1 GAS strain SF370 section 144 of 16
prokMSA_id:47803 AE006473 Streptococcus pyogenes M1 GAS strain SF370 section 2 of 167 
prokMSA_id:48689 AE006479 Streptococcus pyogenes M1 GAS strain SF370 section 8 of 167 
prokMSA_id:49036 AE006474 Streptococcus pyogenes M1 GAS strain SF370 section 3 of 167 
prokMSA_id:54205 AE004092 Streptococcus pyogenes strain SF370 serotype M1 complete gen
prokMSA_id:54235 AE006593 Streptococcus pyogenes M1 GAS strain SF370 section 122 of 16
prokMSA_id:55428 AE009954 Streptococcus pyogenes strain MGAS8232 section 2 of 173 of t
prokMSA_id:61374 NC_003485 Streptococcus pyogenes strain MGAS8232 complete genome
prokMSA_id:63462 AE014141 Streptococcus pyogenes MGAS315 section 6 of 37 of the comple
prokMSA_id:63463 AE014168 Streptococcus pyogenes MGAS315 section 33 of 37 of the compl
prokMSA_id:63464 AE014137 Streptococcus pyogenes MGAS315 section 2 of 37 of the comple
prokMSA_id:63465 AE014136 Streptococcus pyogenes MGAS315 section 1 of 37 of the comple
prokMSA_id:63470 AE014162 Streptococcus pyogenes MGAS315 section 27 of 37 of the compl
prokMSA_id:67871 AE010101 Streptococcus pyogenes strain MGAS8232 section 149 of 173 of
prokMSA_id:67872 AE009959 Streptococcus pyogenes strain MGAS8232 section 7 of 173 of t
prokMSA_id:67873 AE009976 Streptococcus pyogenes strain MGAS8232 section 24 of 173 of 
prokMSA_id:67874 AE010074 Streptococcus pyogenes strain MGAS8232 section 122 of 173 of
prokMSA_id:73813 NC_004070 Streptococcus pyogenes MGAS315 complete genome
prokMSA_id:81122 NC_004606 Streptococcus pyogenes SSI-1 complete genome
prokMSA_id:81395 AP005141 Streptococcus pyogenes SSI-1 complete genome section 1/6
prokMSA_id:82331 AP005142 Streptococcus pyogenes SSI-1 complete genome section 2/6
prokMSA_id:82441 AP005146 Streptococcus pyogenes SSI-1 complete genome section 6/6
2.30.7.21.3.29546 OTU 9 seqs
prokMSA_id:15357 AF176101 Streptococcus didelphis str. W95-108899177
prokMSA_id:15358 AF176102 Streptococcus didelphis str. W95-018899131
prokMSA_id:15359 AF176103 Streptococcus didelphis str. W94-11374-1
prokMSA_id:15360 AF176104 Streptococcus didelphis str. W94-12010
prokMSA_id:15361 AF176105 Streptococcus didelphis str. 95-111064
prokMSA_id:15362 AF176106 Streptococcus didelphis str. W95-2085-1
prokMSA_id:15363 AF176107 Streptococcus didelphis str. 95-3349-1
prokMSA_id:15364 AF176108 Streptococcus didelphis str. W95-3565-7
prokMSA_id:15386 AF176100 Streptococcus didelphis str. W95-4849
2.30.7.21.3.33126 OTU 4 seqs
prokMSA_id:28805 AJ420196 Streptococcus ferus strain HD3
prokMSA_id:35033 AY058218 Streptococcus ferus strain LMG16520T 
prokMSA_id:37236 AF336367 Streptococcus ferus 
prokMSA_id:39498 AJ420197 Streptococcus ferus strain 8S1
2.30.7.21.3.33610 OTU 15 seqs
prokMSA_id:15372 AB002479 Streptococcus agalactiae ATCC 13813
prokMSA_id:15373 AF015927 Streptococcus agalactiae ATCC 27956
prokMSA_id:15374 AB023574 Streptococcus agalactiae JCM 5671
prokMSA_id:15382 AB002523 Streptococcus porcinus ATCC 43138
prokMSA_id:15383 AB002480 Streptococcus agalactiae ATCC 23956
prokMSA_id:55265 AE014192 Streptococcus agalactiae 2603V/R section 2 of 100 of the com
prokMSA_id:55977 AE014195 Streptococcus agalactiae 2603V/R section 5 of 100 of the com
prokMSA_id:57716 NC_004368 Streptococcus agalactiae NEM316 complete genome
prokMSA_id:58770 AF459432 Streptococcus agalactiae 
prokMSA_id:59530 NC_004116 Streptococcus agalactiae 2603V/R complete genome
prokMSA_id:59711 AE014210 Streptococcus agalactiae 2603V/R section 20 of 100 of the co
prokMSA_id:59712 AE014207 Streptococcus agalactiae 2603V/R section 17 of 100 of the co
prokMSA_id:59713 AE014202 Streptococcus agalactiae 2603V/R section 12 of 100 of the co
prokMSA_id:59714 AE014198 Streptococcus agalactiae 2603V/R section 8 of 100 of the com
prokMSA_id:59717 AE014191 Streptococcus agalactiae 2603V/R section 1 of 100 of the com
2.30.7.21.3.41877 OTU 53 seqs
prokMSA_id:15384 AB002485 Streptococcus dysgalactiae subsp. dysgalactiae ATCC 43078
prokMSA_id:15385 AF015928 Streptococcus dysgalactiae ATCC 27957
prokMSA_id:15388 AB002484 Streptococcus dysgalactiae ATCC 27957
prokMSA_id:15389 AB002486 Streptococcus dysgalactiae str. A1
prokMSA_id:15390 AB002487 Streptococcus dysgalactiae str. A20
prokMSA_id:15391 AB002488 Streptococcus dysgalactiae str. A24
prokMSA_id:15392 AB002489 Streptococcus dysgalactiae str. A25
prokMSA_id:15393 AB002490 Streptococcus dysgalactiae str. A5
prokMSA_id:15394 AB002491 Streptococcus dysgalactiae str. A6
prokMSA_id:15395 AB002492 Streptococcus dysgalactiae str. A7
prokMSA_id:15396 AB002493 Streptococcus dysgalactiae str. L13
prokMSA_id:15397 AB002494 Streptococcus dysgalactiae str. L1
prokMSA_id:15398 AB002495 Streptococcus dysgalactiae str. L21
prokMSA_id:15399 AB002496 Streptococcus dysgalactiae str. L23
prokMSA_id:15400 AB002497 Streptococcus dysgalactiae str. L27
prokMSA_id:15401 AB002498 Streptococcus dysgalactiae str. L2
prokMSA_id:15402 AB002499 Streptococcus dysgalactiae str. L31
prokMSA_id:15403 AB002500 Streptococcus dysgalactiae str. L32
prokMSA_id:15404 AB002501 Streptococcus dysgalactiae str. L33
prokMSA_id:15405 AB002502 Streptococcus dysgalactiae str. L34
prokMSA_id:15406 AB002503 Streptococcus dysgalactiae str. L35
prokMSA_id:15407 AB002504 Streptococcus dysgalactiae str. L36
prokMSA_id:15408 AB002505 Streptococcus dysgalactiae str. L4
prokMSA_id:15409 AB002506 Streptococcus dysgalactiae str. L5
prokMSA_id:15410 AB002507 Streptococcus dysgalactiae str. L7
prokMSA_id:15411 AB002508 Streptococcus dysgalactiae str. L8
prokMSA_id:15412 AB002509 Streptococcus dysgalactiae str. L9
prokMSA_id:15413 AB002510 Streptococcus dysgalactiae str. V24
prokMSA_id:15414 AB002511 Streptococcus dysgalactiae str. V24
prokMSA_id:15415 AB002512 Streptococcus dysgalactiae str. V26
prokMSA_id:15416 AB002513 Streptococcus dysgalactiae str. V36
prokMSA_id:15426 AB008926 Streptococcus dysgalactiae subsp. equisimilis NCFB 1356
prokMSA_id:24233 AF433167 Streptococcus dysgalactiae 
prokMSA_id:25514 AJ314611 Streptococcus dysgalactiae subsp. equisimilis strain AC-2074
prokMSA_id:33248 AF371509 clone p-4662-2Wa2 
prokMSA_id:48038 AJ314610 Streptococcus dysgalactiae subsp. equisimilis strain AC-2832
prokMSA_id:48544 AJ314609 Streptococcus dysgalactiae subsp. equisimilis strain AC-2713
prokMSA_id:55142 AB096755 Streptococcus dysgalactiae subsp. equisimilis strain:ATCC 35
prokMSA_id:55700 AJ319644 Streptococcus dysgalactiae subsp. equisimilis strain AC-4436
prokMSA_id:55723 AY121360 Streptococcus dysgalactiae subsp. equisimilis strain ATCC 35
prokMSA_id:62938 AY121362 Streptococcus dysgalactiae subsp. equisimilis strain CIP 55-
prokMSA_id:62942 AY121361 Streptococcus dysgalactiae subsp. equisimilis strain ATCC 12
prokMSA_id:62943 AY121359 Streptococcus dysgalactiae subsp. dysgalactiae strain ATCC 4
prokMSA_id:66197 AJ319643 Streptococcus dysgalactiae subsp. equisimilis strain ATCC 35
prokMSA_id:81034 AB104847 Streptococcus dysgalactiae subsp. equisimilis strain:
prokMSA_id:81224 AB104848 Streptococcus dysgalactiae subsp. equisimilis strain:A-ka
prokMSA_id:81436 AB104844 Streptococcus dysgalactiae subsp. equisimilis strain:N1434
prokMSA_id:81598 AB104840 Streptococcus dysgalactiae subsp. equisimilis strain:1149
prokMSA_id:81712 AB104849 Streptococcus dysgalactiae subsp. equisimilis strain:A-yo
prokMSA_id:81796 AB104846 Streptococcus dysgalactiae subsp. equisimilis strain:Ichi
prokMSA_id:81812 AB104850 Streptococcus dysgalactiae subsp. equisimilis strain:A-sa
prokMSA_id:82202 AB104839 Streptococcus dysgalactiae subsp. equisimilis strain:BL2719
prokMSA_id:82327 AB104842 Streptococcus dysgalactiae subsp. equisimilis strain:Fukuoka
2.30.7.21.3.42403 OTU 2 seqs
prokMSA_id:33357 AF335573 Streptococcus iniae strain Dan 1 
prokMSA_id:45172 AF335572 Streptococcus iniae strain ATCC29178 
2.30.7.21.3.8865 OTU 1 seq
prokMSA_id:82226 AB104841 Streptococcus dysgalactiae subsp. equisimilis strain:1201
2.30.7.21.3.8906 OTU 1 seq
prokMSA_id:22071 AJ131965 Streptococcus sp. strain 2285-97
2.30.7.21.4 STC.HYOINTESTINALIS_SUBGROUP 2 seqs
2.30.7.21.4.31771 OTU 2 seqs
prokMSA_id:15428 AB002518 Streptococcus hyointestinalis ATCC 49169
prokMSA_id:40770 AF201898 Streptococcus hyointestinalis 
2.30.7.21.5 STC.THORALTENSIS_SUBGROUP 1 seq
2.30.7.21.5.13464 OTU 1 seq
prokMSA_id:15430 Y07601 Streptococcus hyovaginalis str. SHV515 DSM 12219
2.30.7.21.6 STC.SALIVARIUS_SUBGROUP 62 seqs
2.30.7.21.6.13524 OTU 1 seq
prokMSA_id:15451 Y10868 Streptococcus gallolyticus ACM 3969
2.30.7.21.6.13531 OTU 1 seq
prokMSA_id:15459 M58839 Streptococcus salivarius str. C699 ATCC 13419
2.30.7.21.6.13613 OTU 1 seq
prokMSA_id:15483 AF084832 Streptococcus KN1 str. KN1
2.30.7.21.6.18808 OTU 1 seq
prokMSA_id:40363 AF432134 Streptococcus sp. oral clone FN042 
2.30.7.21.6.19419 OTU 1 seq
prokMSA_id:70509 AF439398 Streptococcus sobrinus strain 6715 
2.30.7.21.6.30160 OTU 2 seqs
prokMSA_id:15444 AJ243966 Streptococcus sobrinus NCTC 12279
prokMSA_id:80496 AY188349 Streptococcus sobrinus strain ATCC 33478 complete 
2.30.7.21.6.30618 OTU 2 seqs
prokMSA_id:27408 AJ420199 Streptococcus macacae strain NCTC11558
prokMSA_id:80258 AY188351 Streptococcus macacae strain ATCC 35911 complete 
2.30.7.21.6.3224 OTU 1 seq
prokMSA_id:50264 AJ420201 Streptococcus ratti strain ATCC19645
2.30.7.21.6.40041 OTU 33 seqs
prokMSA_id:15436 Z94012 Streptococcus macedonicus str. LAB617 ACA-DC 206
prokMSA_id:15437 AF104114 Streptococcus bovis ATCC 43143
prokMSA_id:15439 AF084834 Streptococcus KN3 str. KN3
prokMSA_id:15440 AF084836 Streptococcus TW1 str. TW1
prokMSA_id:15443 Y10869 Streptococcus caprinus ACM 3968
prokMSA_id:15445 AF157108 Streptococcus streptococcus R16-B35
prokMSA_id:15446 AF088900 Streptococcus waiu str. 3/1; NZRCC 20100
prokMSA_id:15458 AB002482 Streptococcus bovis ATCC 33317
prokMSA_id:15464 AF145239 Streptococcus anginosus str. 367
prokMSA_id:15472 AB006119 Streptococcus anginosus str. GTC820
prokMSA_id:15473 AB006120 Streptococcus anginosus str. GTC821
prokMSA_id:15478 M58835 Streptococcus bovis ATCC 33317
prokMSA_id:15484 AF177729 Streptococcus infantarius str. HDP90104; SLB
prokMSA_id:15485 AB002481 Streptococcus bovis ATCC 27960
prokMSA_id:15486 AB002514 Streptococcus equinus NCTC 9814
prokMSA_id:19466 AF371507 clone p-4289-4Wa3 
prokMSA_id:24015 AF429762 Streptococcus infantarius subsp. infantarius 
prokMSA_id:25587 AF135453 Streptococcus bovis 
prokMSA_id:29347 AJ297217 Streptococcus pasteuri strain NEM1205 CIP 105073
prokMSA_id:30971 AJ297214 Streptococcus luteciae strain NEM 760
prokMSA_id:31706 AF323911 Streptococcus gallolyticus complete 
prokMSA_id:33716 AF429764 Streptococcus bovis HDP90084 
prokMSA_id:36122 AJ305257 Streptococcus bovis strain NCTC11436
prokMSA_id:36638 AF298199 Streptococcus sp. LRC 0476 
prokMSA_id:38058 AF429763 Streptococcus infantarius subsp. coli 
prokMSA_id:39559 AF357559 mpn-isolate group 11 
prokMSA_id:39742 AF396920 Streptococcus bovis strain B315 
prokMSA_id:42690 AF298197 Streptococcus sp. LRC 0253 
prokMSA_id:44756 AJ297216 Streptococcus pasteuri strain NEM1202 CIP 105070
prokMSA_id:46517 AF298198 Streptococcus sp. LRC 0255 
prokMSA_id:51368 AJ301607 Streptococcus equinus strain ATCC 9812
prokMSA_id:58771 AF459431 Streptococcus macedonicus 
prokMSA_id:71159 AF429765 Streptococcus equinus NCDO1037T complete 
2.30.7.21.6.40135 OTU 5 seqs
prokMSA_id:15456 AB002519 Streptococcus alactolyticus str. 76-84-1 ATCC 43492
prokMSA_id:24384 AF371504 clone p-4-a5 
prokMSA_id:41712 AF371505 clone p-2-a5 
prokMSA_id:50372 AF371506 clone p-29-a5 
prokMSA_id:51786 AF201899 Streptococcus alactolyticus 
2.30.7.21.6.4048 OTU 1 seq
prokMSA_id:43122 AJ420198 Streptococcus criceti strain ATCC19642
2.30.7.21.6.42749 OTU 12 seqs
prokMSA_id:15434 X68418 Streptococcus thermophilus DSM 20617
prokMSA_id:23153 AF408260 Streptococcus sp. clone KL-48-1-4 
prokMSA_id:31326 AF408263 Streptococcus sp. clone KL-27-1-5 
prokMSA_id:41340 AF408258 Streptococcus sp. clone KL-86-2-9 
prokMSA_id:56634 AF459433 Streptococcus salivarius 
prokMSA_id:67808 AF349932 Streptococcus sp. CR-314S clone crev-4 
prokMSA_id:67823 AF349918 clone 32CR complete 
prokMSA_id:69863 AF349920 clone 39CR complete 
prokMSA_id:70173 AF202012 Human oral C23 
prokMSA_id:80065 AY188353 Streptococcus vestibularis strain ATCC 49124 complete 
prokMSA_id:80129 AY188352 Streptococcus salivarius strain ATCC 7073 complete 
prokMSA_id:80926 AY188354 Streptococcus thermophilus strain ATCC 19258 complete 
2.30.7.21.6.8667 OTU 1 seq
prokMSA_id:66577 AY098489 Streptococcus sp. AK68 
2.30.7.21.7 STC.CONSTELLATUS_SUBGROUP 6 seqs
2.30.7.21.7.32300 OTU 6 seqs
prokMSA_id:15500 AF104672 Streptococcus intermedius str. 125
prokMSA_id:15501 AF104673 Streptococcus intermedius str. 488
prokMSA_id:15502 AF104674 Streptococcus intermedius str. 535
prokMSA_id:15503 AF104675 Streptococcus intermedius str. 539
prokMSA_id:15504 AF104676 Streptococcus constellatus ATCC 27823
prokMSA_id:15505 AF104677 Streptococcus constellatus str. 206
2.30.7.21.8 STC.SUIS_SUBGROUP 41 seqs
2.30.7.21.8.14111 OTU 1 seq
prokMSA_id:15540 AF009508 Streptococcus suis str. EA1832.92
2.30.7.21.8.16120 OTU 1 seq
prokMSA_id:70091 AF227836 str. 37236 
2.30.7.21.8.20366 OTU 1 seq
prokMSA_id:63461 AJ307888 Streptococcus gallinaceus strain CCUG42692T
2.30.7.21.8.3913 OTU 1 seq
prokMSA_id:26896 Y17358 Streptococcus sp. S369-98-1 
2.30.7.21.8.40013 OTU 37 seqs
prokMSA_id:15508 AF009477 Streptococcus suis str. S735 NCTC 10234
prokMSA_id:15511 AF009475 Streptococcus suis str. 5428
prokMSA_id:15512 AF009478 Streptococcus suis str. 4961
prokMSA_id:15513 AF009479 Streptococcus suis str. 6407
prokMSA_id:15514 AF009483 Streptococcus suis str. 14636
prokMSA_id:15515 AF009484 Streptococcus suis str. 22083
prokMSA_id:15516 AF009485 Streptococcus suis str. 4417
prokMSA_id:15517 AF009486 Streptococcus suis str. 12814
prokMSA_id:15518 AF009487 Streptococcus suis str. 88308
prokMSA_id:15519 AF009489 Streptococcus suis str. 13730
prokMSA_id:15520 AF009490 Streptococcus suis NCTC 1046
prokMSA_id:15521 AF009491 Streptococcus suis str. 2726
prokMSA_id:15522 AF009492 Streptococcus suis str. 93A
prokMSA_id:15523 AF009493 Streptococcus suis str. NT77
prokMSA_id:15524 AF009494 Streptococcus suis str. 42A
prokMSA_id:15529 AF009498 Streptococcus suis str. 89-2479
prokMSA_id:15534 AF009504 Streptococcus suis str. 92-1191
prokMSA_id:15535 AF009506 Streptococcus suis str. 92-4172
prokMSA_id:15542 AF009480 Streptococcus suis str. 11538
prokMSA_id:15543 AF009481 Streptococcus suis str. 2524
prokMSA_id:15544 AF009488 Streptococcus suis str. 10581
prokMSA_id:15547 AF009505 Streptococcus suis str. 92-1400
prokMSA_id:18069 AB071344 Streptococcus suis cds strain:211
prokMSA_id:19499 AB071346 Streptococcus suis cds strain:222
prokMSA_id:20455 AB071345 Streptococcus suis cds strain:220
prokMSA_id:23271 AB071341 Streptococcus suis cds strain:203
prokMSA_id:24173 AB071339 Streptococcus suis cds strain:193
prokMSA_id:27714 AB071349 Streptococcus suis cds strain:235
prokMSA_id:29179 AB071350 Streptococcus suis cds strain:243
prokMSA_id:33693 AB071342 Streptococcus suis cds strain:209
prokMSA_id:34124 AB071348 Streptococcus suis cds strain:228
prokMSA_id:34509 AB071340 Streptococcus suis cds strain:194
prokMSA_id:36314 AB071338 Streptococcus suis cds strain:NIAH11318
prokMSA_id:46648 AB071343 Streptococcus suis cds strain:210
prokMSA_id:49657 AB071337 Streptococcus suis cds strain:DAT2
prokMSA_id:51021 AF009476 Streptococcus suis complete 
prokMSA_id:51591 AB071336 Streptococcus suis cds strain:DAT1
2.30.7.21.9 STC.PNEUMONIAE_SUBGROUP 81 seqs
2.30.7.21.9.1201 OTU 1 seq
prokMSA_id:42170 AF184974 Streptococcus australis 
2.30.7.21.9.14148 OTU 1 seq
prokMSA_id:15556 AB006125 Streptococcus parasanguis GIFU 8099
2.30.7.21.9.14181 OTU 1 seq
prokMSA_id:15567 AB008313 Streptococcus cristatus str. CR311 NCTC 12479
2.30.7.21.9.14176 OTU 1 seq
prokMSA_id:15564 U87827 clone v2
2.30.7.21.9.14205 OTU 1 seq
prokMSA_id:15571 U87829 clone v5
2.30.7.21.9.14214 OTU 1 seq
prokMSA_id:15576 AB002520 Streptococcus mitis str. SK 51 NCTC 3165
2.30.7.21.9.14203 OTU 1 seq
prokMSA_id:15570 U87828 clone v3
2.30.7.21.9.15134 OTU 1 seq
prokMSA_id:47073 AF432137 Streptococcus sp. oral clone FP015 
2.30.7.21.9.18240 OTU 1 seq
prokMSA_id:55342 AJ409287 Streptococcus entericus strain CECT 5353
2.30.7.21.9.18901 OTU 1 seq
prokMSA_id:32537 AF432139 Streptococcus sp. oral clone FP064 
2.30.7.21.9.267 OTU 1 seq
prokMSA_id:42006 AB038371 Streptococcus sp. PSH2 
2.30.7.21.9.27920 OTU 4 seqs
prokMSA_id:31500 AY049738 Streptococcus sp. VA1051_00 
prokMSA_id:35049 AF432856 Streptococcus sinensis strain HKU4 
prokMSA_id:56154 AF432857 Streptococcus sinensis strain HKU6 
prokMSA_id:71759 AF432855 Streptococcus sinensis strain HKU5 
2.30.7.21.9.2868 OTU 1 seq
prokMSA_id:27308 AY005046 Streptococcus sp. oral clone AA007 
2.30.7.21.9.33937 OTU 20 seqs
prokMSA_id:15552 D38482 Streptococcus mitis NCTC 12261
prokMSA_id:15568 AF003929 Streptococcus mitis ATCC 49456
prokMSA_id:15572 AF003930 Streptococcus pneumoniae ATCC 33400
prokMSA_id:15573 AB002522 Streptococcus pneumoniae MAFF 911410
prokMSA_id:17851 AY053482 AT425_EubB10 
prokMSA_id:18951 AE008552 Streptococcus pneumoniae R6 section 168 of 184 of the comple
prokMSA_id:26707 AF316591 Streptococcus sp. 2061A 
prokMSA_id:38886 AF316596 Streptococcus sp. 3192A 
prokMSA_id:39626 AF316595 Streptococcus sp. 3170A 
prokMSA_id:41742 AJ295848 Streptococcus mitis strain 127R
prokMSA_id:41889 AF316594 Streptococcus sp. 3097C 
prokMSA_id:45312 AE008386 Streptococcus pneumoniae R6 section 2 of 184 of the complete
prokMSA_id:46365 AJ295853 Streptococcus mitis strain 209
prokMSA_id:47428 AE008546 Streptococcus pneumoniae R6 section 162 of 184 of the comple
prokMSA_id:48329 AE008537 Streptococcus pneumoniae R6 section 153 of 184 of the comple
prokMSA_id:52668 NC_003098 Streptococcus pneumoniae R6 complete genome
prokMSA_id:53325 NC_003028 Streptococcus pneumoniae complete genome
prokMSA_id:58287 AF543291 Streptococcus mitis 
prokMSA_id:71395 AF385574 Streptococcus sp. oral clone EK048 
prokMSA_id:72273 AF316593 Streptococcus sp. 2056B 
2.30.7.21.9.37652 OTU 13 seqs
prokMSA_id:15565 AJ243965 Streptococcus mutans NCTC 10449
prokMSA_id:51371 AF202013 Human oral C29 
prokMSA_id:55433 AF139600 Streptococcus mutans strain UA96 ; tRNA-Ala complete ; 23S c
prokMSA_id:57764 AE015023 Streptococcus mutans UA159 section 171 of 185 of the complet
prokMSA_id:57765 AE015006 Streptococcus mutans UA159 section 154 of 185 of the complet
prokMSA_id:57766 AE015003 Streptococcus mutans UA159 section 151 of 185 of the complet
prokMSA_id:57767 AE014869 Streptococcus mutans UA159 section 17 of 185 of the complete
prokMSA_id:57768 AE014854 Streptococcus mutans UA159 section 2 of 185 of the complete 
prokMSA_id:69287 AF139599 Streptococcus mutans strain UA140 ; tRNA-Ala complete ; 23S 
prokMSA_id:69297 AF139602 Streptococcus mutans strain AF199 ; tRNA-Ala complete ; 23S 
prokMSA_id:72123 AF139603 Streptococcus mutans strain 669 ; tRNA-Ala complete ; 23S co
prokMSA_id:72641 AF139601 Streptococcus mutans strain LM7 ; tRNA-Ala complete ; 23S co
prokMSA_id:80416 AY188348 Streptococcus mutans strain ATCC 25175 complete 
2.30.7.21.9.40751 OTU 18 seqs
prokMSA_id:15551 AB008315 Streptococcus infantis str. O-122 JCM 10157
prokMSA_id:15554 AF003932 Streptococcus oralis str. PB 182 ATCC 35037
prokMSA_id:26554 AF479579 Streptococcus sp. NJ9704 
prokMSA_id:28885 AY005040 Streptococcus sp. oral strain 7A 
prokMSA_id:36398 AY005044 Streptococcus sp. oral clone CH016 
prokMSA_id:53864 AY005047 Streptococcus sp. oral strain B5SC 
prokMSA_id:59561 AY134908 Streptococcus sp. oral strain 12F 
prokMSA_id:66308 AY099095 Streptococcus oligefermentans 
prokMSA_id:69773 AY005042 Streptococcus sp. oral clone BW009 
prokMSA_id:70487 AF316592 Streptococcus sp. 4093B 
prokMSA_id:70803 AF432132 Streptococcus sp. oral clone DP009 
prokMSA_id:70877 AF432131 Streptococcus sp. oral clone DN025 
prokMSA_id:71055 AY005043 Streptococcus sp. oral clone BM035 
prokMSA_id:71752 AY005045 Streptococcus mitis bv2 
prokMSA_id:72990 AF385526 Streptococcus sp. oral strain T4-E3 
prokMSA_id:73251 AY005041 Streptococcus sp. oral strain H6 
prokMSA_id:73545 AF385525 Streptococcus sp. oral strain T1-E5 
prokMSA_id:73592 AF385523 Streptococcus sp. oral strain H3-M2 
2.30.7.21.9.41063 OTU 5 seqs
prokMSA_id:81367 AF077832 Streptococcus mutans strain LM7 complete 
prokMSA_id:81591 AF077835 Streptococcus mutans strain UA96 complete 
prokMSA_id:81886 AF077833 Streptococcus mutans strain AF199 complete 
prokMSA_id:82180 AF077834 Streptococcus mutans strain 669 complete 
prokMSA_id:82224 AF077836 Streptococcus mutans strain UA140 complete 
2.30.7.21.9.41913 OTU 3 seqs
prokMSA_id:15563 AF003931 Streptococcus gordonii str. SK 3 ATCC 10558
prokMSA_id:36023 AJ427479 Streptococcus gordonii strain DL1
prokMSA_id:62977 AF526931 Streptococcus sp. clone T10-23 rrn 
2.30.7.21.9.42803 OTU 2 seqs
prokMSA_id:15555 AF003933 Streptococcus parasanguinis ATCC 15912
prokMSA_id:15557 AB006127 Streptococcus parasanguis GIFU 8496
2.30.7.21.9.4614 OTU 1 seq
prokMSA_id:58289 AF543289 Streptococcus sp. ChDC OS37 
2.30.7.21.9.5483 OTU 1 seq
prokMSA_id:28293 AF432135 Streptococcus sp. oral clone FN051 
2.30.7.21.9.5872 OTU 1 seq
prokMSA_id:50550 AF385545 Streptococcus sp. oral clone AY020 
2.30.7.21.9.6451 OTU 1 seq
prokMSA_id:81302 AY216449 clone KM46 
2.30.7.21.99 VARIOUS 2 seqs
2.30.7.21.99.36641 OTU 2 seqs
prokMSA_id:42918 AF408257 Streptococcus sp. clone KL-94-1-12 
prokMSA_id:54794 AF408262 Streptococcus sp. clone KL-36-1-14 
2.30.7.99 VARIOUS 4 seqs
2.30.7.99.32256 OTU 4 seqs
prokMSA_id:20396 AF349724 Gram-positive MOL361 complete 
prokMSA_id:27545 AF371536 clone p-2330-s962-2 
prokMSA_id:29728 AF371535 clone p-66-a5 
prokMSA_id:45887 AF371534 clone p-79-a5 
2.30.8 MYCOPLASMA_AND_RELATIVES 577 seqs
2.30.8.2 ACHOLEPLASMA-ANAEROPLASMA_GROUP 281 seqs
2.30.8.2.1 MYCOPLASMA-LIKE-ORGANISM_SUBGROUP_I 147 seqs
2.30.8.2.1.14231 OTU 1 seq
prokMSA_id:15584 D12580 str. tsuwabuki witches' broom
2.30.8.2.1.14228 OTU 1 seq
prokMSA_id:15582 L33764 unnamed organism
2.30.8.2.1.14237 OTU 1 seq
prokMSA_id:15589 Y16389 Phytoplasma Picris echioides yellows phytoplasma
2.30.8.2.1.14235 OTU 1 seq
prokMSA_id:15586 X76430 Mycoplasma sp. str. VAC
2.30.8.2.1.14236 OTU 1 seq
prokMSA_id:15588 Y18052 Phytoplasma Knautia arvensis phyllody phytoplasma
2.30.8.2.1.14616 OTU 1 seq
prokMSA_id:15613 Y17055 Phytoplasma sp. str. StLL
2.30.8.2.1.14621 OTU 1 seq
prokMSA_id:15615 X76433 Mycoplasma sp. str. SUNHP
2.30.8.2.1.14715 OTU 1 seq
prokMSA_id:15641 Y15865 Phytoplasma sp. str. GaLL
2.30.8.2.1.14713 OTU 1 seq
prokMSA_id:15640 X76429 Mycoplasma sp. str. BVK
2.30.8.2.1.14694 OTU 1 seq
prokMSA_id:15636 X76432 str. SCWL
2.30.8.2.1.14728 OTU 1 seq
prokMSA_id:15646 X83438 unnamed organism
2.30.8.2.1.14732 OTU 1 seq
prokMSA_id:15648 Y13912 Phytoplasma sp. str. Coconut lethal yellowing disease
2.30.8.2.1.15075 OTU 1 seq
prokMSA_id:54260 AF147708 Hibiscus witches'-broom phytoplasma strain HibWB26 -23S inte
2.30.8.2.1.15096 OTU 1 seq
prokMSA_id:53611 AJ310849 Phytoplasma sp. PinP intergenic spacer and tRNA-Ile 
2.30.8.2.1.15234 OTU 1 seq
prokMSA_id:23582 AF361018 Ethiopian Gliricidia little leaf phytoplasma 
2.30.8.2.1.16565 OTU 1 seq
prokMSA_id:69575 AJ289192 Stylosanthes little leaf phytoplasma and tRNA-Ile genes
2.30.8.2.1.20497 OTU 1 seq
prokMSA_id:55620 AF515638 Lactuca serriola phytoplasma strain P12 ; 16-23S intergenic 
2.30.8.2.1.2076 OTU 1 seq
prokMSA_id:64533 AF515637 Candidatus Phytoplasma phoeniceum strain 21 ; 16-23S interge
2.30.8.2.1.20879 OTU 1 seq
prokMSA_id:77969 AB052878 Phytoplasma sp. JWB-F 
2.30.8.2.1.29764 OTU 2 seqs
prokMSA_id:15590 Y15866 Phytoplasma sp. str. ViLL
prokMSA_id:25555 AJ289195 Vigna little leaf phytoplasma 
2.30.8.2.1.29775 OTU 3 seqs
prokMSA_id:48457 AF353090 Loofah witches'-broom phytoplasma strain LfWB clone 1 operon
prokMSA_id:69009 AF086621 Loofah witches'-broom phytoplasma tRNA-Ile complete ; 23S ; 
prokMSA_id:69018 AF248956 Loofah witches'-broom phytoplasma complete ; tRNA-Ile comple
2.30.8.2.1.30873 OTU 2 seqs
prokMSA_id:15647 X80117 unnamed organism
prokMSA_id:72848 LD X80117 Phytoplasma sp. strain
2.30.8.2.1.31465 OTU 7 seqs
prokMSA_id:53053 AF455041 Almond witches'-broom phytoplasma strain AlmWB-N1 ; tRNA-Ile
prokMSA_id:53113 AF390137 Almond witches'- broom phytoplasma strain AlmWB2 ; -23S inte
prokMSA_id:53962 AF390136 Almond witches'- broom phytoplasma strain AlmWB1 ; -23S inte
prokMSA_id:64545 AF515636 Candidatus Phytoplasma phoeniceum strain A4 ; 16-23S interge
prokMSA_id:68806 AF455040 Almond witches'-broom phytoplasma strain AlmWB-P1 ; tRNA-Ile
prokMSA_id:68807 AF455039 Almond witches'-broom phytoplasma strain AlmWB4 ; tRNA-Ile c
prokMSA_id:68808 AF455038 Almond witches'-broom phytoplasma strain AlmWB3 ; tRNA-Ile c
2.30.8.2.1.32543 OTU 2 seqs
prokMSA_id:15627 D12581 str. rice yellow dwarf
prokMSA_id:62521 D12581 Rice yellow dwarf phytoplasma 
2.30.8.2.1.32590 OTU 4 seqs
prokMSA_id:15638 U18747 unnamed organism
prokMSA_id:23748 AF361020 Florida Pandanus decline phytoplasma 
prokMSA_id:65941 AF498309 Coconut lethal yellowing phytoplasma strain Florida LY-C2 
prokMSA_id:65944 AF498307 Coconut lethal yellowing phytoplasma strain Jamaica LYJ-C8 
2.30.8.2.1.33609 OTU 20 seqs
prokMSA_id:15580 U15442 unnamed organism
prokMSA_id:15581 Y16393 Phytoplasma Picris echioides phyllody phytoplasma
prokMSA_id:15592 L33765 unnamed organism
prokMSA_id:15617 X90591 unnamed organism
prokMSA_id:15618 Y08173 Phytoplasma sp
prokMSA_id:15619 Y10096 unnamed organism
prokMSA_id:15620 Y10097 unnamed organism
prokMSA_id:15621 AB026155 Phytoplasma Gph subsp. Gerbera phyllody phytoplasma str. GPh
prokMSA_id:15622 AF028813 Phytoplasma Chinese pigeon pea witches'-broom phytoplasma
prokMSA_id:15624 X83432 unnamed organism
prokMSA_id:15625 Y16390 Phytoplasma Italian alfalfa witches-broom phytoplasma
prokMSA_id:15626 Y15863 Phytoplasma sp. str. BoLL
prokMSA_id:18469 AF320575 Phytoplasma sp. pathovar mosaic-inducing complete 
prokMSA_id:28401 AF200718 Cactus phytoplasma 'Martinez-Soriano 1999' complete 
prokMSA_id:41747 AJ289191 Pigeon pea little leaf phytoplasma 
prokMSA_id:42358 AJ293216 Cactus witches'-broom phytoplasma isolate YNO1
prokMSA_id:48933 AJ289193 Sweet potato little leaf phytoplasma strain V4
prokMSA_id:58026 AY144608 'Vinca minor' phytoplasma 
prokMSA_id:60303 AF438413 Omani alfalfa witches'-broom phytoplasma complete 
prokMSA_id:73858 AJ295330 Cocky apple witches' broom phytoplasma tRNA-Ile and 
2.30.8.2.1.33613 OTU 10 seqs
prokMSA_id:15585 U18753 unnamed organism
prokMSA_id:43871 AF237615 Carludovica palmata leaf yellowing phytoplasma 
prokMSA_id:64249 AF500334 Phytoplasma sp. LfY5PE65-Oaxaca 
prokMSA_id:64250 AF500333 Phytoplasma sp. LfY5PE56-Oaxaca 
prokMSA_id:64251 AF500331 Phytoplasma sp. LfY4MA5-Oaxaca 
prokMSA_id:64252 AF500329 Phytoplasma sp. LfY1-Guerrero 
prokMSA_id:64253 AF500330 Phytoplasma sp. LfY4MA3-Oaxaca 
prokMSA_id:64254 AF500332 Phytoplasma sp. LfY2Alv2-Guerrero 
prokMSA_id:68903 AF434989 Texas Phoenix palm phytoplasma ; tRNA-Ile complete ; and 23S
prokMSA_id:72718 U18753 Yucatan coconut lethal decline phytoplasma 
2.30.8.2.1.34636 OTU 24 seqs
prokMSA_id:15591 L33733 unnamed organism
prokMSA_id:15594 L04682 unnamed organism
prokMSA_id:15595 AF189288 str. CYE-Or
prokMSA_id:15597 AF175304 str. CYE-C
prokMSA_id:15598 AF060875 Phytoplasma Virginia grapevine yellows phytoplasma VGYIII st
prokMSA_id:15599 AF173558 Phytoplasma Clover yellow edge phytoplasma str. CYE-L
prokMSA_id:15644 L33766 unnamed organism
prokMSA_id:17222 AF244363 Black locust witches'-broom phytoplasma operon 
prokMSA_id:18269 AF236123 Red suture phytoplasma 
prokMSA_id:18521 AF190227 Walnut witches' broom phytoplasma operon B 
prokMSA_id:33747 AF190223 Poinsettia branch-inducing phytoplasma operon 
prokMSA_id:37584 AF274876 Strawberry leafy fruit phytoplasma 
prokMSA_id:38010 AF190228 Spiraea stunt phytoplasma operon A 
prokMSA_id:38649 AF302841 Black raspberry witches'-broom phytoplasma clone BRWB7 opero
prokMSA_id:48082 AF236122 Little peach phytoplasma 
prokMSA_id:51281 AF190226 Walnut witches' broom phytoplasma operon A 
prokMSA_id:52044 AF236121 Peach rosette phytoplasma 
prokMSA_id:58988 AY081816 Garlic Decline Phytoplasma -23S intergenic spacer region and
prokMSA_id:58989 AY081817 China-tree decline phytoplasma -23S intergenic spacer region
prokMSA_id:62836 AY049029 Gaillardia phyllody phytoplasma ; tRNA-Ile complete ; and 23
prokMSA_id:66027 AY034090 Blueberry proliferation phytoplasma ; tRNA-Ile complete ; an
prokMSA_id:67362 AF495657 Chinaberry yellows phytoplasma ; tRNA-Ile complete ; and 23S
prokMSA_id:69885 AF056094 Sugarcane yellows phytoplasma I strain ScYP I-Barb ; tRNA-Il
prokMSA_id:73130 AF056095 Sugarcane yellows phytoplasma I strain ScYP I-Afr ; tRNA-Ile
2.30.8.2.1.34746 OTU 39 seqs
prokMSA_id:15593 L33763 unnamed organism
prokMSA_id:15602 X76560 str. FD
prokMSA_id:15603 AF189214 str. EY1
prokMSA_id:15604 AF122910 Phytoplasma Elm yellows phytoplasma str. EY1
prokMSA_id:15605 AF122911 Phytoplasma Elm yellows phytoplasma str. WVEY
prokMSA_id:15606 AF122912 Phytoplasma HD1 str. HD1
prokMSA_id:15607 Y16387 Phytoplasma Alder yellows phytoplasma
prokMSA_id:15608 Y16395 Phytoplasma Rubus stunt phytoplasma
prokMSA_id:15611 X83431 unnamed organism
prokMSA_id:15612 AF036354 Phytoplasma 'Fragaria multicipita' phytoplasma str. FRA9083
prokMSA_id:15614 L33761 unnamed organism
prokMSA_id:15623 X68376 str. ULW
prokMSA_id:15628 L33759 unnamed organism
prokMSA_id:15630 X68339 str. ASHY
prokMSA_id:15631 AF189215 str. AshY1
prokMSA_id:15632 AF092209 Phytoplasma Ash yellows phytoplasma str. AshY1
prokMSA_id:15633 AF105315 Phytoplasma Ash yellows phytoplasma str. AshY3
prokMSA_id:15634 AF105316 Phytoplasma Ash yellows phytoplasma str. AshY5
prokMSA_id:15635 AF105317 Phytoplasma Ash yellows phytoplasma str. LWB3
prokMSA_id:17967 AY028789 Alder yellows phytoplasma 
prokMSA_id:20661 AF190224 'Fragaria multicipita' phytoplasma operon A 
prokMSA_id:25887 AF176319 Flavescence doree phytoplasma operon 
prokMSA_id:42718 AF279272 Zizyphus jujube witches'-broom phytoplasma 
prokMSA_id:43247 AF190225 'Fragaria multicipita' phytoplasma operon B 
prokMSA_id:50829 AF409069 Clover proliferation phytoplasma strain EY-IL 2 
prokMSA_id:52099 AF409070 Clover proliferation phytoplasma strain EY-IL 1 
prokMSA_id:54286 AY072722 Ziziphus jujube witches'-broom phytoplasma ; -23S intergenic
prokMSA_id:55407 AF305240 Ziziphus jujube witches'-broom phytoplasma ; and tRNA-Ile co
prokMSA_id:60512 AF411592 Erigeron witches'-broom phytoplasma strain RPWB ; -23S inter
prokMSA_id:66024 AY034608 Erigeron witches'-broom phytoplasma ; tRNA-Ile complete ; an
prokMSA_id:68906 AF228052 Brinjal little leaf phytoplasma complete ; and tRNA-Ile comp
prokMSA_id:69030 AF228053 Periwinkle little leaf phytoplasma complete ; and tRNA-Ile c
prokMSA_id:69629 AF305198 Virginia creeper phytoplasma ; and tRNA-Ile complete 
prokMSA_id:69655 AF268895 Elm phytoplasma 'Arlington Heights' ; tRNA-Ile complete ; an
prokMSA_id:77772 AB052879 Phytoplasma sp. JWB-Ko 
prokMSA_id:78043 AB052877 Phytoplasma sp. JWB-G2 
prokMSA_id:78260 AB052876 Phytoplasma sp. JWB-G1 
prokMSA_id:78322 AB052875 Phytoplasma sp. JWB-Ky 
prokMSA_id:80823 AB076404 Potato witches'-broom phytoplasma -23S intergenic spacer reg
2.30.8.2.1.42153 OTU 8 seqs
prokMSA_id:15596 AF177383 Phytoplasma Soybean veinal necrosis phytoplasma str. SVN
prokMSA_id:53311 AF147707 Chayote witches' broom phytoplasma ChWBIII strain ChWBIIIMor
prokMSA_id:54971 AF147706 Chayote witches' broom phytoplasma ChWBIII strain ChWBIIICh1
prokMSA_id:55569 D12580 Tsuwabuki witches'-broom phytoplasma 
prokMSA_id:63392 AF522458 Phytoplasma sp. PY3 
prokMSA_id:66819 AF373106 Cirsium white leaf phytoplasma operon B 
prokMSA_id:66820 AF373105 Cirsium white leaf phytoplasma operon A 
prokMSA_id:66824 AF370119 Dandelion virescence phytoplasma operon A 
2.30.8.2.1.42678 OTU 2 seqs
prokMSA_id:63016 AF509321 Cynodon white leaf phytoplasma 
prokMSA_id:69014 AF248961 Bermuda grass white leaf phytoplasma complete ; tRNA-Ile com
2.30.8.2.1.42710 OTU 2 seqs
prokMSA_id:63013 AF509325 Sorghum grassy shoot phytoplasma variant II 
prokMSA_id:63014 AF509324 Sorghum grassy shoot phytoplasma variant I 
2.30.8.2.1.443 OTU 1 seq
prokMSA_id:64303 AF521672 Weeping tea tree witches'-broom phytoplasma complete ; tRNA-
2.30.8.2.1.6180 OTU 1 seq
prokMSA_id:58412 AB054986 Candidatus Phytoplasma castaneae 
2.30.8.2.1.8721 OTU 1 seq
prokMSA_id:65943 AF498308 Coconut lethal yellowing phytoplasma strain Florida LYF-C5 
2.30.8.2.2 MYCOPLASMA-LIKE-ORGANISM_SUBGROUP_II 10 seqs
2.30.8.2.2.14756 OTU 1 seq
prokMSA_id:15651 X92869 Phytoplasma sp
2.30.8.2.2.31844 OTU 7 seqs
prokMSA_id:15654 X68374 str. PPER
prokMSA_id:15655 Y11933 Phytoplasma sp. str. ESFY
prokMSA_id:15657 Y16392 Phytoplasma Pear decline phytoplasma
prokMSA_id:15658 Y16394 Phytoplasma Peach yellow leafroll phytoplasma
prokMSA_id:15661 AT X68375 Candidatus Phytoplasma mali IGS1 tRNA-Ile and 23S strain
prokMSA_id:54668 AY029540 European stone fruit yellows phytoplasma and 23S genes 
prokMSA_id:69015 AF248958 Apple proliferation phytoplasma complete ; tRNA-Ile complete
2.30.8.2.2.40807 OTU 2 seqs
prokMSA_id:15656 X76426 Mycoplasma sp
prokMSA_id:15659 X76425 Mycoplasma sp. str. PD
2.30.8.2.3 MYCOPLASMA-LIKE-ORGANISM_SUBGROUP_III 61 seqs
2.30.8.2.3.13359 OTU 1 seq
prokMSA_id:69016 AF248959 Stolbur phytoplasma complete ; tRNA-Ile complete ; and 23S 
2.30.8.2.3.14002 OTU 1 seq
prokMSA_id:60694 AY083605 Buckland valley grapevine yellows phytoplasma operon 
2.30.8.2.3.14802 OTU 1 seq
prokMSA_id:15664 L33762 unnamed organism
2.30.8.2.3.14804 OTU 1 seq
prokMSA_id:15665 L33767 unnamed organism
2.30.8.2.3.14833 OTU 1 seq
prokMSA_id:15674 Y16391 Phytoplasma Bindweed yellows phytoplasma
2.30.8.2.3.20611 OTU 1 seq
prokMSA_id:55663 AF248960 Mexican periwinkle virescence phytoplasma complete ; tRNA-Il
2.30.8.2.3.21378 OTU 1 seq
prokMSA_id:32876 AB010425 Candidatus Phytoplasma japonicum 
2.30.8.2.3.2300 OTU 1 seq
prokMSA_id:56725 AF522457 Phytoplasma sp. PY1 
2.30.8.2.3.30955 OTU 2 seqs
prokMSA_id:15673 X76427 Mycoplasma sp. str. STOL
prokMSA_id:15678 X76428 str. VK
2.30.8.2.3.30947 OTU 7 seqs
prokMSA_id:15667 U43570 Phytoplasma sp. =rrnB operon
prokMSA_id:15668 X95706 Mycoplasma sp. str. AGY
prokMSA_id:15669 L76865 Phytoplasma Australian grapevine yellows phytoplasma subsp
prokMSA_id:15670 Y10095 unnamed organism
prokMSA_id:15671 AJ243044 Phytoplasma Strawberry green petal phytoplasma str. SGP
prokMSA_id:15672 AJ243045 Phytoplasma Strawberry lethal yellows phytoplasma str. SLY
prokMSA_id:15675 U43569 Phytoplasma sp. = operon
2.30.8.2.3.39255 OTU 43 seqs
prokMSA_id:15663 M30790 unnamed organism
prokMSA_id:15677 D12569 str. onion yellows; tomato yellows mulberry dwarf; Paulownia
prokMSA_id:15679 X68338 str. ACLR
prokMSA_id:15680 M86340 str. SAY
prokMSA_id:15681 AF177384 Phytoplasma Alfalfa stunt phytoplasma str. AlfS
prokMSA_id:15682 U89378 Phytoplasma sp. str. rape phylody
prokMSA_id:15683 U96616 Phytoplasma STRAWB2 str. STRAWB2
prokMSA_id:15684 X83870 str. KV
prokMSA_id:15685 L33760 unnamed organism
prokMSA_id:15687 X68373 str. AAY
prokMSA_id:17288 AF356846 Cactus phytoplasma 'Martinez-Soriano 2001' 
prokMSA_id:18665 AF453328 Phytoplasma sp. PY1 
prokMSA_id:21066 AF217247 Potato purple top phytoplasma 
prokMSA_id:21501 AF222066 Clover phyllody phytoplasma strain CPh operon B 
prokMSA_id:21611 AF279271 Paulownia witches'-broom phytoplasma 
prokMSA_id:21676 AF222063 Aster yellows phytoplasma operon 
prokMSA_id:28502 AF322645 Aster yellows phytoplasma strain AY1 clone 10 operon B 
prokMSA_id:30043 AF268404 Aster yellows phytoplasma A isolate 98UW166A 
prokMSA_id:31795 AF222064 Tomato big bud phytoplasma operon 
prokMSA_id:32190 AF322644 Aster yellows phytoplasma strain AY1 clone 14 operon A 
prokMSA_id:36905 AF268403 Aster yellows phytoplasma A isolate 98UW159 
prokMSA_id:37239 AF268406 Aster yellows phytoplasma A isolate 99UW93 
prokMSA_id:42685 AF245439 Aster yellows phytoplasma 
prokMSA_id:44579 AF268407 Aster yellows phytoplasma B isolate 99UW89 
prokMSA_id:45677 AF268408 Aster yellows phytoplasma A isolate 99UW111 
prokMSA_id:46328 AF268409 Aster yellows phytoplasma B isolate 99UW108 
prokMSA_id:46674 AF222065 Clover phyllody phytoplasma strain CPh operon A 
prokMSA_id:48464 AF268405 Aster yellows phytoplasma O isolate 98UW166B 
prokMSA_id:50045 AF291682 Carrot proliferation phytoplasma 
prokMSA_id:51779 AF200431 Cirsium yellows phytoplasma 
prokMSA_id:55023 AY075038 Mulberry dwarf phytoplasma ; -23S intergenic spacer region a
prokMSA_id:55493 AY102274 Valeriana yellows phytoplasma clone ValY2 operon 
prokMSA_id:60545 AY101386 Epilobium phyllody phytoplasma ; -23S intergenic spacer and 
prokMSA_id:62523 D12569 Onion yellows phytoplasma 
prokMSA_id:64235 AY102273 Valeriana yellows phytoplasma clone ValY1 rrnB operon 
prokMSA_id:66025 AY034089 Cherry little leaf phytoplasma 
prokMSA_id:66094 AF510323 Aconitum proliferation phytoplasma ; tRNA-Ile complete ; and
prokMSA_id:68930 AF335107 'Rehmannia glutinosa var. purpurea' phytoplasma and tRNA-Ile
prokMSA_id:71715 AB078436 Phytoplasma sp. WDWB-K 
prokMSA_id:76240 AF453416 Oat proliferation phytoplasma operon 
prokMSA_id:77493 AF515771 'Helichrysum bracteatum' phytoplasma ; tRNA-Ile complete ; a
prokMSA_id:79786 AY192577 Paulownia witches'-broom phytoplasma 
prokMSA_id:82346 AF487779 Maize bushy stunt phytoplasma operon 
2.30.8.2.3.8525 OTU 1 seq
prokMSA_id:67193 AF495882 Chinaberry yellows phytoplasma strain CbY1 ; -23S intergenic
2.30.8.2.5 ACP.LAIDLAWII_SUBGROUP 5 seqs
2.30.8.2.5.14872 OTU 1 seq
prokMSA_id:15689 U14906 Acholeplasma oculi ISM 1499
2.30.8.2.5.14889 OTU 1 seq
prokMSA_id:15693 AB009230 clone RFN82
2.30.8.2.5.14883 OTU 1 seq
prokMSA_id:15690 U14904 Acholeplasma oculi str. 19L ATCC 27350
2.30.8.2.5.30964 OTU 2 seqs
prokMSA_id:15691 U14905 Acholeplasma laidlawii str. PG8 ATCC 23206
prokMSA_id:15692 M23932 Acholeplasma laidlawii str. JA1
2.30.8.2.6 ACP.MODICUM_SUBGROUP 15 seqs
2.30.8.2.6.10574 OTU 1 seq
prokMSA_id:21634 AF371528 clone p-3025-SwA5 
2.30.8.2.6.11185 OTU 1 seq
prokMSA_id:52403 AF371526 clone p-3053-SwA5 
2.30.8.2.6.11716 OTU 1 seq
prokMSA_id:29625 AF132232 adhufec202 
2.30.8.2.6.1371 OTU 1 seq
prokMSA_id:71687 AF132233 adhufec279 
2.30.8.2.6.1380 OTU 1 seq
prokMSA_id:40949 AF371525 clone p-2601-9F5 
2.30.8.2.6.14895 OTU 1 seq
prokMSA_id:15698 AF001742 clone RF9
2.30.8.2.6.14894 OTU 1 seq
prokMSA_id:15696 U16758 Mycoplasma feliminutum ATCC 25749
2.30.8.2.6.14896 OTU 1 seq
prokMSA_id:15699 AF001741 clone RF8
2.30.8.2.6.15216 OTU 1 seq
prokMSA_id:15700 AF001770 clone RF39
2.30.8.2.6.20288 OTU 1 seq
prokMSA_id:33343 AF371524 clone p-3208-42A2 
2.30.8.2.6.28673 OTU 2 seqs
prokMSA_id:21971 AF412968 Acholeplasma axanthum 
prokMSA_id:30323 AJ311394 Acholeplasma axanthum strain 118
2.30.8.2.6.3680 OTU 1 seq
prokMSA_id:41875 AF371522 clone p-2013-s959-5 
2.30.8.2.6.5654 OTU 1 seq
prokMSA_id:21042 AF371523 clone p-974-s962-5 
2.30.8.2.6.7614 OTU 1 seq
prokMSA_id:50779 AF371527 clone p-3870-23G5 
2.30.8.2.7 ANP.VARIUM_SUBGROUP 2 seqs
2.30.8.2.7.15219 OTU 1 seq
prokMSA_id:15703 M25050 Anaeroplasma abactoclasticum str. 6-1 ATCC 27879
2.30.8.2.7.15229 OTU 1 seq
prokMSA_id:15708 AB015266 Cytophaga sp. str. JTB220
2.30.8.2.8 C.RAMOSUM_ASSEMBLAGE 12 seqs
2.30.8.2.8.12015 OTU 1 seq
prokMSA_id:21822 AB030220 Coprobacillus catenaformis strain: JCM 10605
2.30.8.2.8.15255 OTU 1 seq
prokMSA_id:15714 AB009222 clone RFN74
2.30.8.2.8.15246 OTU 1 seq
prokMSA_id:15710 U81729 clone vadinHA31
2.30.8.2.8.15253 OTU 1 seq
prokMSA_id:15713 AB009179 clone RFN20
2.30.8.2.8.25795 OTU 2 seqs
prokMSA_id:15711 AF028350 Clostridium cocleatum str. CM972
prokMSA_id:45363 Y18188 Clostridium cocleatum strain DSM 1551
2.30.8.2.8.27603 OTU 2 seqs
prokMSA_id:36159 AB030219 Coprobacillus catenaformis strain: JCM 10604
prokMSA_id:74862 AB030218 Coprobacillus catenaformis strain: JCM 10603
2.30.8.2.8.32474 OTU 2 seqs
prokMSA_id:15715 X75908 Clostridium spiroforme ATCC 29900
prokMSA_id:15716 X73441 Clostridium spiroforme DSM 1552
2.30.8.2.8.32447 OTU 2 seqs
prokMSA_id:15709 X73440 Clostridium ramosum str. 113-I ATCC 25582
prokMSA_id:15712 M23731 Clostridium ramosum str. 113-I ATCC 25582
2.30.8.2.9 EUB.CYLINDROIDES_SUBGROUP 29 seqs
2.30.8.2.9.11320 OTU 1 seq
prokMSA_id:52474 AF304435 cf. Clostridium sp. MLG055 
2.30.8.2.9.14518 OTU 1 seq
prokMSA_id:60757 AY128088 low G+C Gram-positive clone PSB-M-3 
2.30.8.2.9.15293 OTU 1 seq
prokMSA_id:15728 Y11466 Holdemania filiformis str. J1-31B-1 ATCC 51649
2.30.8.2.9.15296 OTU 1 seq
prokMSA_id:15729 L34683 tortuosum ATCC 25548
2.30.8.2.9.18302 OTU 1 seq
prokMSA_id:31844 AF220064 Bulleidia extructa 
2.30.8.2.9.18348 OTU 1 seq
prokMSA_id:54730 AF371517 clone p-2772-24E5 
2.30.8.2.9.20717 OTU 1 seq
prokMSA_id:77904 AB055907 Erysipelothrix rhusiopathiae -23S spacer region strain:Pecs 
2.30.8.2.9.2791 OTU 1 seq
prokMSA_id:42372 AB018187 cylindroides 
2.30.8.2.9.28478 OTU 2 seqs
prokMSA_id:39574 AF371516 clone p-1630-c5 
prokMSA_id:44294 AF371515 clone p-326-a3 
2.30.8.2.9.30834 OTU 2 seqs
prokMSA_id:15734 M23732 Clostridium innocuum str. B-3 ATCC 14501
prokMSA_id:15735 AF028352 str. CM970
2.30.8.2.9.31338 OTU 2 seqs
prokMSA_id:78125 AB055909 Erysipelothrix rhusiopathiae -23S spacer region strain:KG-BB
prokMSA_id:78143 AB055910 Erysipelothrix rhusiopathiae -23S spacer region strain:KG-BB
2.30.8.2.9.32714 OTU 6 seqs
prokMSA_id:15730 M23728 Erysipelothrix rhusiopathiae str. alpha-P15 ATCC 19414
prokMSA_id:33753 AB034200 Erysipelothrix rhusiopathiae 
prokMSA_id:38274 AB034201 Erysipelothrix tonsillarum 
prokMSA_id:77952 AB055905 Erysipelothrix rhusiopathiae -23S spacer region strain:ATCC 
prokMSA_id:77965 AB055908 Erysipelothrix rhusiopathiae -23S spacer region strain:715
prokMSA_id:78170 AB055906 Erysipelothrix tonsillarum -23S spacer region strain:ATCC 43
2.30.8.2.9.32752 OTU 5 seqs
prokMSA_id:16818 AY044916 Bulleidia moorei strain JCM 10645 
prokMSA_id:19191 AB031058 Solobacterium moorei isolate:RCA59-77
prokMSA_id:21980 AB031056 Solobacterium moorei isolate:RCA59-74
prokMSA_id:22422 AY044915 Bulleidia moorei strain AHP 13983 
prokMSA_id:41366 AB031057 Solobacterium moorei isolate:RCA59-75
2.30.8.2.9.4382 OTU 1 seq
prokMSA_id:42560 AF371518 clone p-75-a5 
2.30.8.2.9.4749 OTU 1 seq
prokMSA_id:49837 AB018186 cylindroides 
2.30.8.2.9.4908 OTU 1 seq
prokMSA_id:50433 AF371512 clone p-392-o3 
2.30.8.2.9.8384 OTU 1 seq
prokMSA_id:43628 AF371513 clone p-2731-24E5 
2.30.8.3 SPIROPLASMA_GROUP 74 seqs
2.30.8.3.1 M.MYCOIDES_SUBGROUP 57 seqs
2.30.8.3.1.15171 OTU 1 seq
prokMSA_id:77171 AY157871 Entomoplasma somnilux 
2.30.8.3.1.15395 OTU 1 seq
prokMSA_id:15756 AF036954 Entomoplasma freundtii
2.30.8.3.1.2212 OTU 1 seq
prokMSA_id:71794 AF303132 Mesoplasma lactucae ATCC 49193 
2.30.8.3.1.33218 OTU 52 seqs
prokMSA_id:15741 U26036 Mycoplasma mycoides subsp. capri str. PG3 =
prokMSA_id:15743 U26050 Mycoplasma mycoides subsp. mycoides str. UM30847 =rrnB
prokMSA_id:15744 U26046 Mycoplasma capricolum subsp. capricolum str. California kid
prokMSA_id:15746 U26052 Mycoplasma capricolum subsp. capripneumoniae str. 4/2LC
prokMSA_id:15747 AF009838 str. 7/1a
prokMSA_id:15748 AF009839 str. 8789
prokMSA_id:15749 AF009840 str. 9081
prokMSA_id:15750 AF009841 str. 91106/550/1
prokMSA_id:15751 AF009842 str. 9231
prokMSA_id:15752 AF009843 str. 95043
prokMSA_id:15753 AF009844 str. GL102
prokMSA_id:15754 AF009845 str. M79/93
prokMSA_id:15755 U26037 Mycoplasma mycoides subsp. capri str. PG3 =rrnB
prokMSA_id:15757 U26053 Mycoplasma sp. str. PG50 =
prokMSA_id:15758 U26045 Mycoplasma capricolum subsp. capricolum str. California kid
prokMSA_id:15759 AF085350 str. 8756-13
prokMSA_id:15760 U26039 Mycoplasma mycoides subsp. mycoides str. PG1 =rrnB
prokMSA_id:15761 M10588 Mycoplasma sp. str. PG50 =
prokMSA_id:15762 U26047 Mycoplasma capricolum subsp. capricolum str. E570/iii =
prokMSA_id:15763 M94728 Mycoplasma sp. str. F38 =rrnB operon
prokMSA_id:15765 U26041 Mycoplasma capricolum subsp. capricolum str. G5 =rrnB
prokMSA_id:15766 U26040 Mycoplasma capricolum subsp. capricolum str. G5 =
prokMSA_id:15767 U26043 Mycoplasma mycoides subsp. mycoides str. Y-goat =
prokMSA_id:15768 U26051 Mycoplasma capricolum subsp. capripneumoniae str. 4/2LC
prokMSA_id:15769 U26054 Mycoplasma sp. str. PG50 =rrnB
prokMSA_id:15770 U26044 Mycoplasma mycoides subsp. mycoides str. Y-goat =rrnB
prokMSA_id:15771 U26038 Mycoplasma mycoides subsp. mycoides str. PG1 =
prokMSA_id:15772 U26049 Mycoplasma mycoides subsp. mycoides str. UM30847 =
prokMSA_id:15773 U26042 Mycoplasma capricolum subsp. capripneumoniae str. F38 =
prokMSA_id:15774 AF009830 str. 7/1a
prokMSA_id:15775 AF009831 str. 8789
prokMSA_id:15776 AF009832 str. 9081
prokMSA_id:15777 AF009833 str. 91106/C550/1
prokMSA_id:15778 AF009834 str. 9231
prokMSA_id:15779 AF009835 str. 95043
prokMSA_id:15780 AF009836 str. GL102
prokMSA_id:15781 AF009837 str. M79/93
prokMSA_id:15782 U26048 Mycoplasma capricolum subsp. capricolum str. E570/iii =rrnB
prokMSA_id:20656 AF202925 Mycoplasma capricolum capripneumoniae operon 
prokMSA_id:22976 AF232909 Mycoplasma capricolum subsp. capripneumoniae operon B 
prokMSA_id:27213 AF202923 Mycoplasma capricolum capripneumoniae operon 
prokMSA_id:30974 AF202927 Mycoplasma capricolum capripneumoniae operon 
prokMSA_id:31582 AF202928 Mycoplasma capricolum capripneumoniae rrnB operon 
prokMSA_id:34810 AF202926 Mycoplasma capricolum capripneumoniae rrnB operon 
prokMSA_id:35482 AF232908 Mycoplasma capricolum subsp. capripneumoniae operon A 
prokMSA_id:47300 AF202924 Mycoplasma capricolum capripneumoniae rrnB operon 
prokMSA_id:70102 AF261729 Mycoplasma sp. 'bovine group 7' isolate 47 
prokMSA_id:70694 AF261724 Mycoplasma sp. 'bovine group 7' isolate 57 
prokMSA_id:71050 AF261725 Mycoplasma sp. 'bovine group 7' isolate 4 
prokMSA_id:71421 AF261726 Mycoplasma sp. 'bovine group 7' isolate 33 
prokMSA_id:71703 AF261727 Mycoplasma sp. 'bovine group 7' isolate 36 
prokMSA_id:72686 AF261730 Mycoplasma sp. 'bovine group 7' isolate 48 
2.30.8.3.1.42502 OTU 2 seqs
prokMSA_id:70686 AF547212 Entomoplasma lucivorax 
prokMSA_id:75155 AY155670 Entomoplasma luminosum strain ATCC 49195 
2.30.8.3.2 M.PUTREFACIENS_SUBGROUP 3 seqs
2.30.8.3.2.19752 OTU 1 seq
prokMSA_id:78432 AY177627 Mesoplasma photuris 
2.30.8.3.2.32033 OTU 2 seqs
prokMSA_id:15785 U67946 Mycoplasma yeatsii str. GIH ATCC 51346
prokMSA_id:15786 U26055 Mycoplasma putrefaciens str. KS-1 = + rrnB
2.30.8.3.4 ENP.MELALEUCAE_SUBGROUP 6 seqs
2.30.8.3.4.32344 OTU 6 seqs
prokMSA_id:70272 AF305693 Mesoplasma entomophilum 
prokMSA_id:71542 AF300327 Mesoplasma florum 
prokMSA_id:75831 AY168929 Mesoplasma corruscae 
prokMSA_id:76006 AY166704 Mesoplasma chauliocola 
prokMSA_id:77531 AY174170 Mesoplasma grammopterae 
prokMSA_id:79099 AY187288 Mesoplasma tabanidae 
2.30.8.3.6 SPP.GLADIATORIS_SUBGROUP 1 seq
2.30.8.3.6.15504 OTU 1 seq
prokMSA_id:15797 M24476 Spiroplasma taiwanense str. CT-1 ATCC 43302
2.30.8.3.7 SPP.CITRI_SUBGROUP 3 seqs
2.30.8.3.7.15788 OTU 1 seq
prokMSA_id:15800 M24662 Spiroplasma mirum str. SMCA ATCC 29335
2.30.8.3.7.32334 OTU 2 seqs
prokMSA_id:15802 M23942 Spiroplasma citri str. Maroc-R8-A2 ATCC 27556
prokMSA_id:15803 X63781 Spiroplasma citri str. R8A2HP
2.30.8.3.8 SPP.IXODETIS_SUBGROUP 4 seqs
2.30.8.3.8.31922 OTU 4 seqs
prokMSA_id:15805 AJ132412 Spiroplasma sp
prokMSA_id:29463 AB048263 Spiroplasma sp. SM 
prokMSA_id:49332 AB030022 Spiroplasma-symbiont of Antonina crawii 
prokMSA_id:53927 AJ245996 Spiroplasma sp. and 23S genes and 23S 
2.30.8.4 M.PNEUMONIAE_GROUP 72 seqs
2.30.8.4.1 UPL.UREALYTICUM_SUBGROUP 29 seqs
2.30.8.4.1.15834 OTU 1 seq
prokMSA_id:15815 U06096 Ureaplasma urealyticum str. 23 serovar 2 ATCC 27814
2.30.8.4.1.15873 OTU 1 seq
prokMSA_id:15827 D78650 Ureaplasma diversum str. A417
2.30.8.4.1.15890 OTU 1 seq
prokMSA_id:15830 D78651 Ureaplasma felinum str. FT2-B
2.30.8.4.1.15875 OTU 1 seq
prokMSA_id:15828 D78648 Ureaplasma canigenitalium str. D6P-C
2.30.8.4.1.15876 OTU 1 seq
prokMSA_id:15829 D78649 Ureaplasma cati str. F2
2.30.8.4.1.15892 OTU 1 seq
prokMSA_id:15831 U62937 Ureaplasma gallorale ATCC 43346
2.30.8.4.1.28925 OTU 23 seqs
prokMSA_id:15806 U06098 Ureaplasma urealyticum str. Pi serovar 6 ATCC 27818
prokMSA_id:15807 U06094 Ureaplasma urealyticum str. 7 serovar 1 ATCC 27813
prokMSA_id:15808 AF073457 Ureaplasma urealyticum str. U26 serovar 14 ATCC 33697
prokMSA_id:15809 AF073458 Ureaplasma urealyticum str. 7 serovar 1 ATCC 27813
prokMSA_id:15810 U06095 Ureaplasma urealyticum str. U26 serovar 14 ATCC 33697
prokMSA_id:15811 L08642 Ureaplasma urealyticum str. 27
prokMSA_id:15812 AF073456 Ureaplasma urealyticum ATCC 27815
prokMSA_id:15813 AF073459 Ureaplasma urealyticum str. Pi serovar 6 ATCC 27818
prokMSA_id:15814 M23935 Ureaplasma urealyticum str. 960 ATCC 27618
prokMSA_id:15816 U06097 Ureaplasma urealyticum str. 354 serovar 5 ATCC 27817
prokMSA_id:15817 AF073446 Ureaplasma urealyticum str. 23 serovar 2 ATCC 27814
prokMSA_id:15818 AF073447 Ureaplasma urealyticum ATCC 27816
prokMSA_id:15819 AF073448 Ureaplasma urealyticum str. 354 serovar 5 ATCC 27817
prokMSA_id:15820 AF073449 Ureaplasma urealyticum ATCC 27819
prokMSA_id:15821 AF073450 Ureaplasma urealyticum str. 960 ATCC 27618
prokMSA_id:15822 AF073451 Ureaplasma urealyticum ATCC 33175
prokMSA_id:15823 AF073452 Ureaplasma urealyticum ATCC 33699
prokMSA_id:15824 AF073453 Ureaplasma urealyticum ATCC 33695
prokMSA_id:15825 AF073454 Ureaplasma urealyticum ATCC 33696
prokMSA_id:15826 AF073455 Ureaplasma urealyticum ATCC 33698
prokMSA_id:40947 AE002112 Ureaplasma urealyticum section 13 of 59 of the complete geno
prokMSA_id:48336 NC_002162 Ureaplasma urealyticum complete genome
prokMSA_id:50881 AE002127 Ureaplasma urealyticum section 28 of 59 of the complete geno
2.30.8.4.2 M.IOWAE_SUBGROUP 10 seqs
2.30.8.4.2.10978 OTU 1 seq
prokMSA_id:43971 AB062824 clone:BCf4-19
2.30.8.4.2.15902 OTU 1 seq
prokMSA_id:15837 AF125878 Mycoplasma fastidiosum str. 4822
2.30.8.4.2.15896 OTU 1 seq
prokMSA_id:15833 L10839 Mycoplasma penetrans str. GTU-54-6A1
2.30.8.4.2.18377 OTU 1 seq
prokMSA_id:78268 AB089056 Mycoplasma sp. clone:Rs-B53
2.30.8.4.2.25614 OTU 2 seqs
prokMSA_id:15832 U22415 Mycoplasma volis str. IL-372
prokMSA_id:42807 AF212859 Mycoplasma microti 
2.30.8.4.2.31168 OTU 2 seqs
prokMSA_id:15836 X55271 Mycoplasma iowae str. PPAV
prokMSA_id:15839 U29676 Mycoplasma iowae
2.30.8.4.2.37683 OTU 2 seqs
prokMSA_id:76821 NC_004432 Mycoplasma penetrans complete genome
prokMSA_id:76952 AP004174 Mycoplasma penetrans genomic complete section 5/5
2.30.8.4.3 M.GENITALIUM_SUBGROUP 7 seqs
2.30.8.4.3.31183 OTU 4 seqs
prokMSA_id:15844 M29061 Mycoplasma pneumoniae str. FH ATCC 15531
prokMSA_id:15845 U00089 Mycoplasma pneumoniae str. M129
prokMSA_id:15846 AF132740 Mycoplasma pneumoniae str. FH ATCC 15531
prokMSA_id:15847 AF132741 ATCC 29342
2.30.8.4.3.32110 OTU 3 seqs
prokMSA_id:15840 U39693 Mycoplasma genitalium str. G37 J.G. Tully ATCC 33530
prokMSA_id:15841 X77334 Mycoplasma genitalium str. G37
prokMSA_id:15842 L43967 Mycoplasma genitalium str. G37 =
2.30.8.4.4 M.GALLISEPTICUM_SUBGROUP 7 seqs
2.30.8.4.4.15933 OTU 1 seq
prokMSA_id:15848 U44765 Mycoplasma alvi str. Isley
2.30.8.4.4.15953 OTU 1 seq
prokMSA_id:15850 M23940 Mycoplasma pirum str. HRC/70-159 ATCC 25960
2.30.8.4.4.15956 OTU 1 seq
prokMSA_id:15851 U09788 Mycoplasma testudinis str. 010 ATCC 43263
2.30.8.4.4.31188 OTU 4 seqs
prokMSA_id:15852 L24103 Mycoplasma imitans str. 4229
prokMSA_id:15853 M22441 Mycoplasma gallisepticum str. A5969
prokMSA_id:15854 L08896 Mycoplasma gallisepticum str. S6 =rrn16 operon
prokMSA_id:15855 L08897 Mycoplasma gallisepticum str. S6; A5969 = operon
2.30.8.4.5 HBN.FELIS_SUBGROUP 19 seqs
2.30.8.4.5.18725 OTU 1 seq
prokMSA_id:70410 AY150978 Candidatus Mycoplasma haemominutum isolate Australian no. 3 
2.30.8.4.5.21326 OTU 1 seq
prokMSA_id:49164 AF338268 Mycoplasma ovis 
2.30.8.4.5.31189 OTU 2 seqs
prokMSA_id:15857 AF029394 Eperythrozoon suis str. Zachary
prokMSA_id:15859 U88565 Eperythrozoon suis str. Illinois
2.30.8.4.5.32073 OTU 11 seqs
prokMSA_id:15861 U95297 Haemobartonella felis
prokMSA_id:23047 AF178677 Haemobartonella felis 
prokMSA_id:31040 AF197337 Haemobartonella canis 
prokMSA_id:50405 AF407208 Haemobartonella canis 
prokMSA_id:56527 AF548631 Mycoplasma haemofelis 
prokMSA_id:58418 AY150985 Mycoplasma haemofelis isolate UK no. 6 
prokMSA_id:58425 AY150977 Mycoplasma haemofelis isolate Australian no. 2 
prokMSA_id:58429 AY150972 Mycoplasma haemofelis isolate French no. 1 
prokMSA_id:70879 U88563 Candidatus Mycoplasma haemominutum 
prokMSA_id:71517 AY150973 Mycoplasma haemocanis isolate German no. 1 
prokMSA_id:74226 AY069948 Haemobartonella felis 
2.30.8.4.5.33042 OTU 4 seqs
prokMSA_id:15856 U88564 Haemobartonella felis str. California
prokMSA_id:58423 AY150980 Candidatus Mycoplasma haemominutum isolate UK no. 1 
prokMSA_id:58424 AY150979 Candidatus Mycoplasma haemominutum isolate South African no.
prokMSA_id:73873 AY150981 Candidatus Mycoplasma haemominutum isolate UK no. 2 
2.30.8.5 M.HOMINIS_GROUP 150 seqs
2.30.8.5.1 MYCOPLASMA.MOBILE 2 seqs
2.30.8.5.1.15995 OTU 1 seq
prokMSA_id:15863 M24480 Mycoplasma mobile str. 163K ATCC 43663
2.30.8.5.1.2709 OTU 1 seq
prokMSA_id:42338 AF412984 Mycoplasma moatsii 
2.30.8.5.2 M.HYOPNEUMONIAE_SUBGROUP 18 seqs
2.30.8.5.2.16018 OTU 1 seq
prokMSA_id:15870 U44771 Mycoplasma ovipneumoniae str. Y-98
2.30.8.5.2.16021 OTU 1 seq
prokMSA_id:15872 U44770 Mycoplasma conjunctivae str. HRC/583
2.30.8.5.2.15999 OTU 1 seq
prokMSA_id:15865 U44768 Mycoplasma bovoculi str. M165/69
2.30.8.5.2.17898 OTU 1 seq
prokMSA_id:39647 AF412988 Mycoplasma sualvi 
2.30.8.5.2.19560 OTU 1 seq
prokMSA_id:56134 AF538681 Mycoplasma collis ; -23S intergenic spacer complete ; and 23
2.30.8.5.2.20287 OTU 1 seq
prokMSA_id:33342 AF412985 Mycoplasma molare 
2.30.8.5.2.20513 OTU 1 seq
prokMSA_id:79153 AY191226 Mycoplasma gypsbengalensis strain Gb-V33 
2.30.8.5.2.29937 OTU 2 seqs
prokMSA_id:28253 AF412974 Mycoplasma collis 
prokMSA_id:32835 AF412976 Mycoplasma cricetuli 
2.30.8.5.2.30575 OTU 2 seqs
prokMSA_id:15880 Y00149 Mycoplasma hyopneumoniae str. Weybridge ATCC 27719
prokMSA_id:21580 E02783 of Mycoplasma hyopneumoniae 
2.30.8.5.2.30899 OTU 3 seqs
prokMSA_id:15864 L22210 Mycoplasma flocculare str. Ms42
prokMSA_id:15867 X63377 Mycoplasma flocculare str. Ms42
prokMSA_id:15874 X62699 Mycoplasma flocculare str. Ms42 ATCC 27399
2.30.8.5.2.32935 OTU 3 seqs
prokMSA_id:15878 AF121890 Mycoplasma hyorhinis ATCC VR-2580
prokMSA_id:31894 AF412982 Mycoplasma hyorhinis 
prokMSA_id:42111 AF258792 Mycoplasma hyorhinis strain BTS7 rrs 
2.30.8.5.2.3864 OTU 1 seq
prokMSA_id:19656 AF412979 Mycoplasma dispar 
2.30.8.5.3 M.HOMINIS_SUBGROUP 35 seqs
2.30.8.5.3.12179 OTU 1 seq
prokMSA_id:67615 AF493543 Mycoplasma zalophus 
2.30.8.5.3.13253 OTU 1 seq
prokMSA_id:60547 AY050170 Mycoplasma timone 
2.30.8.5.3.16078 OTU 1 seq
prokMSA_id:15899 AF001173 Mycoplasma 'Grey Lung disease agent'
2.30.8.5.3.16071 OTU 1 seq
prokMSA_id:15891 AF125593 Mycoplasma indiense str. 3T
2.30.8.5.3.16077 OTU 1 seq
prokMSA_id:15897 AF125591 Mycoplasma falconis str. H/T1
2.30.8.5.3.16051 OTU 1 seq
prokMSA_id:15888 AF125588 Mycoplasma subdolum str. TB
2.30.8.5.3.16407 OTU 1 seq
prokMSA_id:15905 AF125583 Mycoplasma salivarium str. PG20
2.30.8.5.3.16404 OTU 1 seq
prokMSA_id:15901 AF125590 Mycoplasma faucium str. DC333
2.30.8.5.3.16406 OTU 1 seq
prokMSA_id:15903 AF125589 Mycoplasma gypis str. B1/T1
2.30.8.5.3.16402 OTU 1 seq
prokMSA_id:15900 AF125586 Mycoplasma buccale str. CH20247
2.30.8.5.3.21678 OTU 1 seq
prokMSA_id:72086 AF125585 Mycoplasma equirhinis strain M432/72 
2.30.8.5.3.21747 OTU 1 seq
prokMSA_id:71453 AF304323 Mycoplasma phocicerebrale 
2.30.8.5.3.27203 OTU 5 seqs
prokMSA_id:18925 AF465775 Mycoplasma hyosynoviae strain M309/84 
prokMSA_id:31624 AF465777 Mycoplasma hyosynoviae strain EU4a 
prokMSA_id:37697 AF465776 Mycoplasma hyosynoviae strain SF9317 
prokMSA_id:40373 AF465778 Mycoplasma hyosynoviae strain L44 
prokMSA_id:49757 AF465779 Mycoplasma hyosynoviae strain SAC63 
2.30.8.5.3.2808 OTU 1 seq
prokMSA_id:72462 AF304325 Mycoplasma phocae 
2.30.8.5.3.30387 OTU 6 seqs
prokMSA_id:15892 M96660 Mycoplasma hominis str. 183
prokMSA_id:19704 AJ002267 Mycoplasma hominis rrnB operon strain SC4
prokMSA_id:23718 AJ002265 Mycoplasma hominis rrnB operon strain PG21
prokMSA_id:40026 AJ002268 Mycoplasma hominis rrnB operon strain P2
prokMSA_id:49564 AJ002269 Mycoplasma hominis rrnB operon strain 7488
prokMSA_id:74598 AJ002266 Mycoplasma hominis rrnB operon strain DC63
2.30.8.5.3.31977 OTU 2 seqs
prokMSA_id:15887 AF125584 Mycoplasma anseris str. 1219
prokMSA_id:39995 AF125592 Mycoplasma cloacale strain 383 
2.30.8.5.3.32000 OTU 2 seqs
prokMSA_id:15896 AF125587 Mycoplasma spumans str. PG13
prokMSA_id:59733 AF538684 Mycoplasma spumans ; -23S intergenic spacer complete ; and 2
2.30.8.5.3.33377 OTU 6 seqs
prokMSA_id:15884 U15796 Mycoplasma gateae ATCC 23392
prokMSA_id:15886 U44769 Mycoplasma canadense str. 275c
prokMSA_id:15889 U44764 Mycoplasma alkalescens str. PG51
prokMSA_id:15894 U15794 Mycoplasma arginini ATCC 25528
prokMSA_id:15895 AF125581 Mycoplasma arginini str. G230
prokMSA_id:15902 U67944 Mycoplasma auris str. UIA ATCC 51348
2.30.8.5.3.7498 OTU 1 seq
prokMSA_id:36302 AF221121 Mycoplasma elephantis isolate E42 
2.30.8.5.4 M.AGASSIZII_SUBGROUP 4 seqs
2.30.8.5.4.16411 OTU 1 seq
prokMSA_id:15908 U19768 Mycoplasma sp. str. H3110
2.30.8.5.4.31118 OTU 3 seqs
prokMSA_id:15910 AF125582 Mycoplasma pulmonis str. PG34
prokMSA_id:49947 NC_002771 Mycoplasma pulmonis complete genome
prokMSA_id:58394 AL445565 Mycoplasma pulmonis strain UAB CTIP complete genome; segment
2.30.8.5.5 M.BOVIRHINIS_SUBGROUP 25 seqs
2.30.8.5.5.11128 OTU 1 seq
prokMSA_id:53013 AF412978 Mycoplasma cynos 
2.30.8.5.5.16425 OTU 1 seq
prokMSA_id:15912 U44766 Mycoplasma bovirhinis str. PG43
2.30.8.5.5.16430 OTU 1 seq
prokMSA_id:15916 U16759 Mycoplasma leonicaptivi ATCC 49890
2.30.8.5.5.16447 OTU 1 seq
prokMSA_id:15920 U22013 Mycoplasma sturni str. UCMF; p170/171 ATCC 51945
2.30.8.5.5.16452 OTU 1 seq
prokMSA_id:15922 L24104 Mycoplasma gallinaceum str. DD
2.30.8.5.5.16457 OTU 1 seq
prokMSA_id:15925 AF150495 Mycoplasma 94630 str. 94630
2.30.8.5.5.16433 OTU 1 seq
prokMSA_id:15917 U09787 Mycoplasma felis ATCC 23391
2.30.8.5.5.16435 OTU 1 seq
prokMSA_id:15918 L08054 Mycoplasma corogypsi str. BV1 ATCC 51148
2.30.8.5.5.18015 OTU 1 seq
prokMSA_id:69777 AF412971 Mycoplasma buteonis 
2.30.8.5.5.18214 OTU 1 seq
prokMSA_id:32469 AF412977 Mycoplasma crocodyli 
2.30.8.5.5.18712 OTU 1 seq
prokMSA_id:70402 AF412973 Mycoplasma citelli 
2.30.8.5.5.19393 OTU 1 seq
prokMSA_id:71155 AF538682 Mycoplasma cynos ; -23S intergenic spacer complete ; and 23S
2.30.8.5.5.2170 OTU 1 seq
prokMSA_id:71789 AF412970 Mycoplasma anatis 
2.30.8.5.5.2820 OTU 1 seq
prokMSA_id:72467 AF412986 Mycoplasma mustelae 
2.30.8.5.5.30192 OTU 2 seqs
prokMSA_id:15921 AF170102 unnamed organism
prokMSA_id:24960 AF412975 Mycoplasma columborale 
2.30.8.5.5.30792 OTU 2 seqs
prokMSA_id:15919 AF064062 Mycoplasma gallopavonis
prokMSA_id:72545 AF412980 Mycoplasma gallopavonis 
2.30.8.5.5.31129 OTU 2 seqs
prokMSA_id:15928 L07757 Mycoplasma synoviae str. WVU 1853
prokMSA_id:15929 X52083 Mycoplasma synoviae str. WVU 1853
2.30.8.5.5.34220 OTU 2 seqs
prokMSA_id:15913 U73903 Mycoplasma edwardii str. PG24
prokMSA_id:74000 AF340023 Mycoplasma canis 
2.30.8.5.5.578 OTU 1 seq
prokMSA_id:70918 AF412981 Mycoplasma glycophilum 
2.30.8.5.5.909 OTU 1 seq
prokMSA_id:49382 AF412969 Mycoplasma alligatoris 
2.30.8.5.5.9520 OTU 1 seq
prokMSA_id:28733 AF412989 Mycoplasma verecundum 
2.30.8.5.6 M.HYOPHARYNGIS_SUBGROUP 1 seq
2.30.8.5.6.16474 OTU 1 seq
prokMSA_id:15931 U58997 Mycoplasma hyopharyngis str. H3-6B F
2.30.8.5.7 M.AGALACTIAE_SUBGROUP 35 seqs
2.30.8.5.7.16501 OTU 1 seq
prokMSA_id:15943 U15795 Mycoplasma felifaucium ATCC 43428
2.30.8.5.7.16499 OTU 1 seq
prokMSA_id:15941 U67943 Mycoplasma adleri str. G145 ATCC 27948
2.30.8.5.7.19006 OTU 1 seq
prokMSA_id:48246 AF221118 Mycoplasma primatum isolate HRC292 
2.30.8.5.7.28797 OTU 2 seqs
prokMSA_id:19193 AF221117 Mycoplasma opalescens isolate MH5408 
prokMSA_id:71629 AF538961 Mycoplasma opalescens complete ; and 23S 
2.30.8.5.7.30389 OTU 2 seqs
prokMSA_id:15944 U16760 Mycoplasma leopharyngis ATCC 49889
prokMSA_id:47885 AF221116 Mycoplasma maculosum isolate PG15 
2.30.8.5.7.32052 OTU 26 seqs
prokMSA_id:15933 U44763 Mycoplasma agalactiae str. PG2
prokMSA_id:15935 U02968 Mycoplasma bovis str. Donetta
prokMSA_id:15937 AF092935 Mycoplasma bovis str. JTCL1
prokMSA_id:15940 AF010477 Mycoplasma agalactiae str. Izat 17/95-96
prokMSA_id:15942 U44767 Mycoplasma bovis str. Donetta
prokMSA_id:17045 AF332756 Mycoplasma bovis strain 120/81 
prokMSA_id:25799 AJ419903 Mycoplasma agalactiae strain 5632
prokMSA_id:31572 AJ419904 Mycoplasma agalactiae strain 4212
prokMSA_id:51117 AF332744 Mycoplasma agalactiae strain 847.121 
prokMSA_id:70015 AF332751 Mycoplasma agalactiae strain 35 
prokMSA_id:70591 AF332752 Mycoplasma bovis strain M148/88 
prokMSA_id:70634 AF332750 Mycoplasma agalactiae strain 4136/96 no 2 
prokMSA_id:70874 AJ419900 Mycoplasma agalactiae strain PG2
prokMSA_id:71393 AJ419905 Mycoplasma bovis strain PG45
prokMSA_id:71755 AF332746 Mycoplasma agalactiae strain 5725 
prokMSA_id:71854 AF332749 Mycoplasma agalactiae strain 25/95 
prokMSA_id:71989 AJ419902 Mycoplasma agalactiae strain 209
prokMSA_id:72350 AF332754 Mycoplasma bovis strain 1067 
prokMSA_id:72539 AJ419901 Mycoplasma agalactiae strain 6968
prokMSA_id:72986 AF332755 Mycoplasma bovis strain L22 
prokMSA_id:73088 AF332753 Mycoplasma bovis strain MC3386 
prokMSA_id:73175 AF332757 Mycoplasma bovis strain 422/88 
prokMSA_id:73703 AF332745 Mycoplasma agalactiae strain 396/12 
prokMSA_id:73746 AF332748 Mycoplasma agalactiae strain L9 
prokMSA_id:74108 AF332747 Mycoplasma agalactiae strain 17 
prokMSA_id:74234 AF332743 Mycoplasma agalactiae strain M133/87 
2.30.8.5.7.32276 OTU 2 seqs
prokMSA_id:15936 AJ000494 Mycoplasma sp. str. Patient#88
prokMSA_id:19645 AF221119 Mycoplasma spermatophilum isolate AH159 
2.30.8.5.8 M.MELEAGRIDIS_SUBGROUP 30 seqs
2.30.8.5.8.1111 OTU 1 seq
prokMSA_id:72219 AF304324 Mycoplasma phocirhinis 
2.30.8.5.8.14426 OTU 1 seq
prokMSA_id:60702 AF527624 Mycoplasma sp. HRC689 /23S intergenic spacer complete ; and 
2.30.8.5.8.15839 OTU 1 seq
prokMSA_id:23690 AF221120 Mycoplasma equigenitalium isolate T37 
2.30.8.5.8.16503 OTU 1 seq
prokMSA_id:15947 L24106 Mycoplasma meleagridis str. 17529
2.30.8.5.8.16527 OTU 1 seq
prokMSA_id:15953 U16323 Mycoplasma simbae ATCC 49888
2.30.8.5.8.16509 OTU 1 seq
prokMSA_id:15949 L24105 Mycoplasma gallinarum str. PG16
2.30.8.5.8.16530 OTU 1 seq
prokMSA_id:15954 M24582 Mycoplasma californicum str. ST-6 ATCC 33461
2.30.8.5.8.18091 OTU 1 seq
prokMSA_id:70343 AF221112 Mycoplasma columbinasale isolate 694 
2.30.8.5.8.2677 OTU 1 seq
prokMSA_id:73061 AF221111 Mycoplasma caviae isolate G122 
2.30.8.5.8.30277 OTU 2 seqs
prokMSA_id:15948 AF064063 Mycoplasma iners
prokMSA_id:50081 AF221114 Mycoplasma iners isolate PG30 
2.30.8.5.8.35106 OTU 17 seqs
prokMSA_id:19819 AF465628 Mycoplasma bovigenitalium strain 2001-035TU 
prokMSA_id:55778 AY121097 Mycoplasma bovigenitalium isolate 988/80 
prokMSA_id:62437 AY121105 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 48SR99 
prokMSA_id:62438 AY121107 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 52SR99 
prokMSA_id:62440 AY121106 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 52SR98 
prokMSA_id:62442 AY121103 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 3SR99 
prokMSA_id:62446 AY121095 Mycoplasma bovigenitalium isolate 434/81 
prokMSA_id:62449 AY121098 Mycoplasma bovigenitalium strain PG 11 
prokMSA_id:70063 AY121100 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 126SR99 
prokMSA_id:70186 AY121096 Mycoplasma bovigenitalium isolate 57B00 
prokMSA_id:71448 AY121102 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 12SR98 
prokMSA_id:71679 AY121101 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 129SR99 
prokMSA_id:72631 AY121109 Mycoplasma bovigenitalium isolate 398/87 
prokMSA_id:72958 AY121099 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 122SR99 
prokMSA_id:73778 AY121104 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 48SR98 
prokMSA_id:73988 AY121108 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 95SR99 
prokMSA_id:74382 AY121094 Mycoplasma sp. 'ovine/caprine serogroup 11' strain 2D 
2.30.8.5.8.572 OTU 1 seq
prokMSA_id:71570 AF221113 Mycoplasma columbinum isolate MMP-1 
2.30.8.5.8.901 OTU 1 seq
prokMSA_id:19295 AF221115 Mycoplasma lipofaciens isolate R171 
2.30.9 CLOSTRIDIUM_AND_RELATIVES 572 seqs
2.30.9.1 C.LEPTUM_GROUP 345 seqs
2.30.9.1.1 C.THERMOCELLUM_SUBGROUP 81 seqs
2.30.9.1.1.10582 OTU 1 seq
prokMSA_id:82466 AY214179 clone ZZ12C1 
2.30.9.1.1.13203 OTU 1 seq
prokMSA_id:16002 AF018558 clone JW32
2.30.9.1.1.13206 OTU 1 seq
prokMSA_id:16004 AF018564 clone 12-124
2.30.9.1.1.13784 OTU 1 seq
prokMSA_id:29902 AB034030 rumen 4C0d-17 
2.30.9.1.1.14669 OTU 1 seq
prokMSA_id:45715 AB034127 rumen 4C28d-18 
2.30.9.1.1.15158 OTU 1 seq
prokMSA_id:53642 Y18180 Clostridium thermosuccinogenes strain DSM 5807
2.30.9.1.1.15632 OTU 1 seq
prokMSA_id:47100 AF371820 clone p-1565-b5 
2.30.9.1.1.15621 OTU 1 seq
prokMSA_id:31444 AF323768 clone BA143 complete 
2.30.9.1.1.16141 OTU 1 seq
prokMSA_id:32177 AF286038 Saltmarsh clone LCP-84 
2.30.9.1.1.16156 OTU 1 seq
prokMSA_id:32194 AB034038 rumen 5C0d-4 
2.30.9.1.1.16322 OTU 1 seq
prokMSA_id:77360 AF482434 clone R1p16 
2.30.9.1.1.16531 OTU 1 seq
prokMSA_id:15955 L35517 Bacteroides cellulosolvens ATCC 35603
2.30.9.1.1.16569 OTU 1 seq
prokMSA_id:15969 X71846 Clostridium aldrichii DSM 6159
2.30.9.1.1.16537 OTU 1 seq
prokMSA_id:15959 AJ229248 Clostridium FCB45 str. FCB45
2.30.9.1.1.16554 OTU 1 seq
prokMSA_id:15960 AJ229249 Clostridium FCG90-1 str. FCB90-1
2.30.9.1.1.16603 OTU 1 seq
prokMSA_id:15982 AB009228 clone RFN80
2.30.9.1.1.16606 OTU 1 seq
prokMSA_id:15989 L09173 Clostridium thermocellum DSM 1237
2.30.9.1.1.16591 OTU 1 seq
prokMSA_id:15977 AB011057 Clostridium josui str. III FERM P-9684
2.30.9.1.1.16589 OTU 1 seq
prokMSA_id:15975 AB009220 clone RFN72
2.30.9.1.1.16588 OTU 1 seq
prokMSA_id:15974 AB009186 clone RFN28
2.30.9.1.1.16584 OTU 1 seq
prokMSA_id:15971 AF001739 clone RF6
2.30.9.1.1.16590 OTU 1 seq
prokMSA_id:15976 AB015268 str. JTB32
2.30.9.1.1.16620 OTU 1 seq
prokMSA_id:15992 AB009175 clone RFN16
2.30.9.1.1.16616 OTU 1 seq
prokMSA_id:68943 AF407388 clone RA9C1 
2.30.9.1.1.16623 OTU 1 seq
prokMSA_id:15995 AB009227 clone RFN8
2.30.9.1.1.16621 OTU 1 seq
prokMSA_id:15993 AB009183 clone RFN25
2.30.9.1.1.16586 OTU 1 seq
prokMSA_id:15972 AF001743 clone RF10
2.30.9.1.1.16622 OTU 1 seq
prokMSA_id:15994 AB009218 clone RFN70
2.30.9.1.1.16946 OTU 1 seq
prokMSA_id:78088 AB089020 Clostridiaceae clone:Rs-D81
2.30.9.1.1.17012 OTU 1 seq
prokMSA_id:53929 AF371827 clone p-3024-SwA5 
2.30.9.1.1.17182 OTU 1 seq
prokMSA_id:16692 AB034012 rumen 3C0d-12 
2.30.9.1.1.17714 OTU 1 seq
prokMSA_id:78199 AB088976 Clostridiaceae clone:Rs-H83
2.30.9.1.1.17768 OTU 1 seq
prokMSA_id:17384 AB034077 rumen 5C3d-17 
2.30.9.1.1.17804 OTU 1 seq
prokMSA_id:39605 AJ229219 from anoxic bulk soil clone BSV75
2.30.9.1.1.17933 OTU 1 seq
prokMSA_id:16796 AF371819 clone p-3230-42A2 
2.30.9.1.1.17988 OTU 1 seq
prokMSA_id:70302 AF538854 Clostridiales oral clone P4PB_122 P3 
2.30.9.1.1.1823 OTU 1 seq
prokMSA_id:48899 AF371815 clone p-1062-a5 
2.30.9.1.1.18787 OTU 1 seq
prokMSA_id:71095 AF317372 feedlot manure B4 
2.30.9.1.1.18819 OTU 1 seq
prokMSA_id:63236 AF523991 clone FW105 
2.30.9.1.1.18924 OTU 1 seq
prokMSA_id:63296 AF523923 clone RCP2-43 
2.30.9.1.1.19040 OTU 1 seq
prokMSA_id:17517 AF385563 sp. oral clone BU014 
2.30.9.1.1.19117 OTU 1 seq
prokMSA_id:24765 AB034027 rumen 4C0d-14 
2.30.9.1.1.19165 OTU 1 seq
prokMSA_id:77738 AB088982 Clostridiaceae clone:Rs-M05
2.30.9.1.1.19140 OTU 1 seq
prokMSA_id:77727 AB088977 Clostridiaceae clone:Rs-J39
2.30.9.1.1.19204 OTU 1 seq
prokMSA_id:16925 AJ318164 firmicute clone BIri47
2.30.9.1.1.19355 OTU 1 seq
prokMSA_id:69942 AF371714 clone p-4154-6Wa5 
2.30.9.1.1.19652 OTU 1 seq
prokMSA_id:48313 AF407399 clone RA13C2 
2.30.9.1.1.20871 OTU 1 seq
prokMSA_id:77963 AB089011 Clostridiaceae clone:Rs-K46
2.30.9.1.1.21476 OTU 1 seq
prokMSA_id:55772 AF507888 low G+C Gram-positive clone ML635J-65 
2.30.9.1.1.21512 OTU 1 seq
prokMSA_id:17822 AF371822 clone p-1014-a5 
2.30.9.1.1.2512 OTU 1 seq
prokMSA_id:50120 AJ229216 from anoxic bulk soil clone BSV72
2.30.9.1.1.2732 OTU 1 seq
prokMSA_id:72439 AF287779 Firmicutes sp. oral clone F058 
2.30.9.1.1.29478 OTU 2 seqs
prokMSA_id:15999 L35515 Acetivibrio cellulolyticus str. BAS ATCC 35928
prokMSA_id:16007 L35516 Acetivibrio cellulolyticus str. CD2 ATCC 33288
2.30.9.1.1.29474 OTU 2 seqs
prokMSA_id:15970 AF001719 clone RC38
prokMSA_id:16005 AB009181 clone RFN23
2.30.9.1.1.29488 OTU 2 seqs
prokMSA_id:35836 AF371818 clone p-85-a5 
prokMSA_id:45626 AF371817 clone p-1086-a5 
2.30.9.1.1.2992 OTU 1 seq
prokMSA_id:26721 AB034047 rumen 5C0d-14 
2.30.9.1.1.30524 OTU 2 seqs
prokMSA_id:24626 AY050580 clone GOUTA8 
prokMSA_id:50158 AY050596 clone GOUTB10 
2.30.9.1.1.31169 OTU 2 seqs
prokMSA_id:15963 X71854 Clostridium termitidis DSM 5396
prokMSA_id:15980 X71856 Clostridium cellobioparum DSM 1351
2.30.9.1.1.312 OTU 1 seq
prokMSA_id:42029 AB034045 rumen 5C0d-12 
2.30.9.1.1.31799 OTU 2 seqs
prokMSA_id:35019 AJ229191 from anoxic bulk soil clone BSV29
prokMSA_id:50695 AJ229193 from anoxic bulk soil clone BSV31
2.30.9.1.1.33675 OTU 2 seqs
prokMSA_id:15984 AF001697 clone RC4
prokMSA_id:15990 AF001733 clone RC31
2.30.9.1.1.3507 OTU 1 seq
prokMSA_id:35260 AF371832 clone p-2531-18B5 
2.30.9.1.1.3978 OTU 1 seq
prokMSA_id:81069 AB100474 Clostridiaceae clone: Rs-057
2.30.9.1.1.42050 OTU 2 seqs
prokMSA_id:62670 AF507891 low G+C Gram-positive clone ML635J-14 
prokMSA_id:62672 AF507890 low G+C Gram-positive clone ML635J-38 
2.30.9.1.1.5183 OTU 1 seq
prokMSA_id:42636 AF371826 clone p-208-o5 
2.30.9.1.1.5637 OTU 1 seq
prokMSA_id:81208 AB093546 Clostridium sp. JC3 
2.30.9.1.1.5715 OTU 1 seq
prokMSA_id:81242 AB100467 Clostridiaceae clone: Rs-L37
2.30.9.1.1.7155 OTU 1 seq
prokMSA_id:27881 AF407403 clone RA13C3 
2.30.9.1.1.7162 OTU 1 seq
prokMSA_id:82036 AB100478 Clostridiaceae clone: Rs-056
2.30.9.1.1.7190 OTU 1 seq
prokMSA_id:82058 AB100493 Clostridiaceae clone: Rs-060
2.30.9.1.1.9309 OTU 1 seq
prokMSA_id:74480 AB034126 rumen 4C28d-12 
2.30.9.1.1.9360 OTU 1 seq
prokMSA_id:29311 AB078861 Clostridiaceae str. 80Wd 
2.30.9.1.1.9598 OTU 1 seq
prokMSA_id:52211 AF371808 clone p-1772-c3 
2.30.9.1.2 C.THERMOLACTICUM_SUBGROUP 6 seqs
2.30.9.1.2.29505 OTU 5 seqs
prokMSA_id:16011 L09175 str. Rt51.B1
prokMSA_id:16012 L09174 Clostridium stercorarium NCIMB 11754
prokMSA_id:16013 L09176 Clostridium thermolacticum str. TC 21 DSM 2911
prokMSA_id:16015 X72870 Clostridium thermolacticum str. TX41
prokMSA_id:40758 AF266461 Clostridium stercorarium subsp. leptospartum 
2.30.9.1.2.8140 OTU 1 seq
prokMSA_id:81528 AB100479 Clostridiaceae clone: Rs-068
2.30.9.1.3 C.LEPTUM_SUBGROUP 254 seqs
2.30.9.1.3.10091 OTU 1 seq
prokMSA_id:29413 AF371796 clone p-2657-65A5 
2.30.9.1.3.10095 OTU 1 seq
prokMSA_id:37295 AB062812 clone:BCf2-24
2.30.9.1.3.10112 OTU 1 seq
prokMSA_id:73946 AF371780 clone p-2448-18B5 
2.30.9.1.3.10242 OTU 1 seq
prokMSA_id:28809 AF371943 clone p-5228-4Wb5 
2.30.9.1.3.10303 OTU 1 seq
prokMSA_id:29495 AF371720 clone p-2609-9F5 
2.30.9.1.3.10352 OTU 1 seq
prokMSA_id:30067 AF371759 clone p-2506-18B5 
2.30.9.1.3.10494 OTU 1 seq
prokMSA_id:45135 AJ404681 ZF3 
2.30.9.1.3.10587 OTU 1 seq
prokMSA_id:51722 AF371805 clone p-1877-s962-3 
2.30.9.1.3.10916 OTU 1 seq
prokMSA_id:43950 AF371803 clone p-1316-a5 
2.30.9.1.3.11241 OTU 1 seq
prokMSA_id:22352 AJ400237 clone F13
2.30.9.1.3.11329 OTU 1 seq
prokMSA_id:81903 AB100489 Clostridiaceae clone: Rs-L27
2.30.9.1.3.11416 OTU 1 seq
prokMSA_id:44628 AB034124 rumen 4C28d-19 
2.30.9.1.3.11472 OTU 1 seq
prokMSA_id:37423 AB062821 clone:BCf4-08
2.30.9.1.3.11506 OTU 1 seq
prokMSA_id:21784 AB034005 rumen 3C0d-5 
2.30.9.1.3.11591 OTU 1 seq
prokMSA_id:81980 AB100486 Clostridiaceae clone: Rs-116
2.30.9.1.3.11685 OTU 1 seq
prokMSA_id:74798 AF132261 adhufec311 
2.30.9.1.3.11747 OTU 1 seq
prokMSA_id:66942 AJ306752 clone SHA-32
2.30.9.1.3.12007 OTU 1 seq
prokMSA_id:38129 AF371948 clone p-5460-2Wb5 
2.30.9.1.3.13238 OTU 1 seq
prokMSA_id:16017 AF001706 clone RC15
2.30.9.1.3.13255 OTU 1 seq
prokMSA_id:16023 AF157051 str. ASF 500
2.30.9.1.3.13241 OTU 1 seq
prokMSA_id:16019 AF001758 clone RF26
2.30.9.1.3.13287 OTU 1 seq
prokMSA_id:30476 AF132283 adhufec108 
2.30.9.1.3.13297 OTU 1 seq
prokMSA_id:16040 AF104837 Ruminococcus flavefaciens str. AR46
2.30.9.1.3.13258 OTU 1 seq
prokMSA_id:16027 AF001761 clone RF29
2.30.9.1.3.13303 OTU 1 seq
prokMSA_id:16045 AF001713 clone RC23
2.30.9.1.3.13280 OTU 1 seq
prokMSA_id:16036 AF001720 clone RC37
2.30.9.1.3.13305 OTU 1 seq
prokMSA_id:16047 M59116 Clostridium sporosphaeroides ATCC 25781
2.30.9.1.3.13274 OTU 1 seq
prokMSA_id:16030 U81762 clone vadinHA42
2.30.9.1.3.13275 OTU 1 seq
prokMSA_id:16031 AF129864 clone BC09
2.30.9.1.3.13276 OTU 1 seq
prokMSA_id:16033 AF129862 clone CA26
2.30.9.1.3.13331 OTU 1 seq
prokMSA_id:16059 L09177 Clostridium cellulosi str.
2.30.9.1.3.13366 OTU 1 seq
prokMSA_id:16063 AB009176 clone RFN17
2.30.9.1.3.13375 OTU 1 seq
prokMSA_id:16067 AF030446 Ruminococcus flavefaciens str. NJ
2.30.9.1.3.13355 OTU 1 seq
prokMSA_id:16060 AF001698 clone RC5
2.30.9.1.3.13360 OTU 1 seq
prokMSA_id:16062 AF050581 clone WCHB1-49
2.30.9.1.3.13358 OTU 1 seq
prokMSA_id:16061 AF001699 clone RC6
2.30.9.1.3.13405 OTU 1 seq
prokMSA_id:16072 X81125 Clostridium viride str. T2-7 DSM 6836
2.30.9.1.3.13406 OTU 1 seq
prokMSA_id:16073 AF050582 clone WCHB1-54
2.30.9.1.3.13436 OTU 1 seq
prokMSA_id:16080 X85022 Fusobacterium prausnitzii ATCC 27766
2.30.9.1.3.13514 OTU 1 seq
prokMSA_id:52755 AJ408987 clone HuCB2
2.30.9.1.3.13515 OTU 1 seq
prokMSA_id:52759 AF371735 clone p-4067-6Wa3 
2.30.9.1.3.13599 OTU 1 seq
prokMSA_id:45569 AB034013 rumen 3C0d-14 
2.30.9.1.3.14846 OTU 1 seq
prokMSA_id:45766 AB034020 rumen 4C0d-7 
2.30.9.1.3.15049 OTU 1 seq
prokMSA_id:31384 AF371749 clone p-839-a5 
2.30.9.1.3.15093 OTU 1 seq
prokMSA_id:30743 AF371940 clone p-5291-2Wa3 
2.30.9.1.3.15269 OTU 1 seq
prokMSA_id:16379 AB034011 rumen 3C0d-11 
2.30.9.1.3.15532 OTU 1 seq
prokMSA_id:45893 AF371760 clone p-4157-6Wa5 
2.30.9.1.3.15579 OTU 1 seq
prokMSA_id:32020 Y18187 Clostridium orbiscindens strain DSM 674
2.30.9.1.3.15812 OTU 1 seq
prokMSA_id:16466 AB034028 rumen 4C0d-15 
2.30.9.1.3.16106 OTU 1 seq
prokMSA_id:70077 AF132280 adhufec81 
2.30.9.1.3.16421 OTU 1 seq
prokMSA_id:46657 AF376229 ckncm325-B3-50 
2.30.9.1.3.16384 OTU 1 seq
prokMSA_id:16559 AF371791 clone p-1617-c5 
2.30.9.1.3.1644 OTU 1 seq
prokMSA_id:25957 AF371792 clone p-2479-18B5 
2.30.9.1.3.16747 OTU 1 seq
prokMSA_id:31601 AF481148 Linmingia china 
2.30.9.1.3.16759 OTU 1 seq
prokMSA_id:25054 AF371765 clone p-1082-a5 
2.30.9.1.3.16757 OTU 1 seq
prokMSA_id:78007 AB089030 Clostridiaceae clone:Rs-A13
2.30.9.1.3.16943 OTU 1 seq
prokMSA_id:78083 AB088958 Clostridiaceae clone:Rs-M87
2.30.9.1.3.16992 OTU 1 seq
prokMSA_id:77443 AF349415 A2 
2.30.9.1.3.17075 OTU 1 seq
prokMSA_id:16649 AF371755 clone p-812-a5 
2.30.9.1.3.17330 OTU 1 seq
prokMSA_id:40164 AF371764 clone p-1986-959-5 
2.30.9.1.3.17510 OTU 1 seq
prokMSA_id:78138 AB088969 Clostridiaceae clone:Rs-N70
2.30.9.1.3.17578 OTU 1 seq
prokMSA_id:78154 AB089044 Clostridiaceae clone:Rs-M14
2.30.9.1.3.17579 OTU 1 seq
prokMSA_id:31763 AF371736 clone p-193-o5 
2.30.9.1.3.17611 OTU 1 seq
prokMSA_id:78167 AB089031 Clostridiaceae clone:Rs-G87
2.30.9.1.3.17622 OTU 1 seq
prokMSA_id:48084 AF371756 clone p-1791-c3 
2.30.9.1.3.17641 OTU 1 seq
prokMSA_id:78171 AB089040 Clostridiaceae clone:Rs-N94
2.30.9.1.3.17604 OTU 1 seq
prokMSA_id:77507 AF349422 A29-1 
2.30.9.1.3.1769 OTU 1 seq
prokMSA_id:50072 AF376224 ckncm320-B3-25 
2.30.9.1.3.17676 OTU 1 seq
prokMSA_id:78187 AB089045 Clostridiaceae clone:Rs-C76
2.30.9.1.3.17771 OTU 1 seq
prokMSA_id:16729 AF371773 clone p-2428-55G5 
2.30.9.1.3.17830 OTU 1 seq
prokMSA_id:46835 AF371799 clone p-953-s962-5 
2.30.9.1.3.17894 OTU 1 seq
prokMSA_id:23994 AF371775 clone p-3567-9F3 
2.30.9.1.3.18268 OTU 1 seq
prokMSA_id:78224 AB088965 Clostridiaceae clone:Rs-M34
2.30.9.1.3.18276 OTU 1 seq
prokMSA_id:32491 AJ305238 Clostridium leptum strain DSM 753T
2.30.9.1.3.18557 OTU 1 seq
prokMSA_id:77671 AB089033 Clostridiaceae clone:Rs-N16
2.30.9.1.3.18535 OTU 1 seq
prokMSA_id:39700 AF167711 Papillibacter cinnaminovorans 
2.30.9.1.3.18619 OTU 1 seq
prokMSA_id:77698 AB089038 Clostridiaceae clone:Rs-D76
2.30.9.1.3.18614 OTU 1 seq
prokMSA_id:77693 AB089043 Clostridiaceae clone:Rs-A15
2.30.9.1.3.18742 OTU 1 seq
prokMSA_id:33112 AF371740 clone p-1719-b3 
2.30.9.1.3.18977 OTU 1 seq
prokMSA_id:78317 AB089008 Clostridiaceae clone:Rs-Q01
2.30.9.1.3.19047 OTU 1 seq
prokMSA_id:25396 AF332710 clone UASB_brew_B23 
2.30.9.1.3.19116 OTU 1 seq
prokMSA_id:78375 AB088952 Clostridiaceae clone:Rs-N86
2.30.9.1.3.19095 OTU 1 seq
prokMSA_id:78368 AB088968 Clostridiaceae clone:Rs-M18
2.30.9.1.3.19114 OTU 1 seq
prokMSA_id:77718 AB088953 Clostridiaceae clone:Rs-N03
2.30.9.1.3.19093 OTU 1 seq
prokMSA_id:31973 AJ408998 clone HuCB24
2.30.9.1.3.19132 OTU 1 seq
prokMSA_id:77723 AB088981 Clostridiaceae clone:Rs-P74
2.30.9.1.3.19118 OTU 1 seq
prokMSA_id:78376 AB089029 Clostridiaceae clone:Rs-Q69
2.30.9.1.3.19263 OTU 1 seq
prokMSA_id:77781 AB089034 Clostridiaceae clone:Rs-Q53
2.30.9.1.3.19667 OTU 1 seq
prokMSA_id:78408 AB088979 Clostridiaceae clone:Rs-M04
2.30.9.1.3.19881 OTU 1 seq
prokMSA_id:77816 AB089047 Clostridiaceae clone:Rs-C69
2.30.9.1.3.19852 OTU 1 seq
prokMSA_id:77804 AB088966 Clostridiaceae clone:Rs-H18
2.30.9.1.3.19936 OTU 1 seq
prokMSA_id:77833 AB089039 Clostridiaceae clone:Rs-K92
2.30.9.1.3.19969 OTU 1 seq
prokMSA_id:77848 AB089028 Clostridiaceae clone:Rs-M23
2.30.9.1.3.2001 OTU 1 seq
prokMSA_id:71706 AF150697 Elbe River snow isolate Iso15_5 
2.30.9.1.3.20245 OTU 1 seq
prokMSA_id:33321 AB034039 rumen 5C0d-6 
2.30.9.1.3.20290 OTU 1 seq
prokMSA_id:33345 AB034019 rumen 4C0d-6 
2.30.9.1.3.20622 OTU 1 seq
prokMSA_id:24921 AF376228 ckncm324-B6-45 
2.30.9.1.3.20625 OTU 1 seq
prokMSA_id:18361 AJ270469 Butyrate-producing A2-165 
2.30.9.1.3.20947 OTU 1 seq
prokMSA_id:71310 AF132242 adhufec168 16 
2.30.9.1.3.20927 OTU 1 seq
prokMSA_id:77987 AB089036 Clostridiaceae clone:Rs-K11
2.30.9.1.3.21063 OTU 1 seq
prokMSA_id:40616 AF371770 clone p-84-a5 
2.30.9.1.3.21089 OTU 1 seq
prokMSA_id:41287 AF371776 clone p-1651-c5 
2.30.9.1.3.21238 OTU 1 seq
prokMSA_id:26264 AF371750 clone p-1637-c5 
2.30.9.1.3.21339 OTU 1 seq
prokMSA_id:19080 AF371758 clone p-1510-b5 
2.30.9.1.3.21562 OTU 1 seq
prokMSA_id:17850 AF376226 ckncm322-B3-7 
2.30.9.1.3.21957 OTU 1 seq
prokMSA_id:40798 AF371806 clone p-2560-9F5 
2.30.9.1.3.24977 OTU 2 seqs
prokMSA_id:21306 AF371753 clone p-241-o5 
prokMSA_id:31392 AF371752 clone p-422-o3 
2.30.9.1.3.2506 OTU 1 seq
prokMSA_id:80201 AY188291 clone KD1-101 
2.30.9.1.3.25493 OTU 2 seqs
prokMSA_id:32948 AF132258 adhufec296 
prokMSA_id:71027 AF371807 clone p-900-a5 
2.30.9.1.3.26714 OTU 4 seqs
prokMSA_id:29057 AB034071 rumen 6C3d-10 
prokMSA_id:31936 AB034070 rumen 6C3d-12 
prokMSA_id:39644 AB034072 rumen 6C3d-27 
prokMSA_id:54623 AB034073 rumen 6C3d-33 
2.30.9.1.3.2790 OTU 1 seq
prokMSA_id:35154 AF371744 clone p-3051-SwA5 
2.30.9.1.3.2796 OTU 1 seq
prokMSA_id:42379 AB034048 rumen 5C0d-16 
2.30.9.1.3.2903 OTU 1 seq
prokMSA_id:71858 AF376225 ckncm321-B7-11 
2.30.9.1.3.2934 OTU 1 seq
prokMSA_id:33914 AF371739 clone p-4177-6Wa5 
2.30.9.1.3.2935 OTU 1 seq
prokMSA_id:27355 AF371738 clone p-1061-a5 
2.30.9.1.3.29514 OTU 2 seqs
prokMSA_id:16018 AF001740 clone RF7
prokMSA_id:16029 AB009217 clone RFN7
2.30.9.1.3.2953 OTU 1 seq
prokMSA_id:26704 AF371823 clone p-2573-9F5 
2.30.9.1.3.29531 OTU 2 seqs
prokMSA_id:16021 AB009219 clone RFN71
prokMSA_id:45828 AB034076 rumen 3C3d-13 
2.30.9.1.3.29577 OTU 2 seqs
prokMSA_id:16037 AF001730 clone RCP6
prokMSA_id:26324 AB034024 rumen 4C0d-11 
2.30.9.1.3.29759 OTU 5 seqs
prokMSA_id:16048 L76598 Ruminococcus albus str. 7 ATCC 27210
prokMSA_id:16049 AF104839 Ruminococcus albus str. AR67
prokMSA_id:16052 AF030452 Ruminococcus albus str. OR108
prokMSA_id:16074 X85098 Ruminococcus albus
prokMSA_id:16075 AF079847 Ruminococcus albus str. F-40
2.30.9.1.3.29735 OTU 2 seqs
prokMSA_id:16043 AF030449 Ruminococcus flavefaciens str. C52 ATCC 49949
prokMSA_id:44827 AF371747 clone p-421-o3 
2.30.9.1.3.29773 OTU 2 seqs
prokMSA_id:16050 AF104833 Ruminococcus albus str. Ra8
prokMSA_id:16051 AF030451 Ruminococcus albus str. 20 ATCC 27211
2.30.9.1.3.29792 OTU 2 seqs
prokMSA_id:16058 X98011 Anaerofilum agile str. F DSM 4272
prokMSA_id:16081 X97852 Anaerofilum pentosovorans str. Fae DSM 7168
2.30.9.1.3.29938 OTU 2 seqs
prokMSA_id:20993 AB034026 rumen 4C0d-13 
prokMSA_id:48444 AB034074 rumen 3C3d-3 
2.30.9.1.3.30124 OTU 2 seqs
prokMSA_id:21443 AF376222 ckncm318-B6-18 
prokMSA_id:25644 AF376221 ckncm317-B3-27 
2.30.9.1.3.3013 OTU 1 seq
prokMSA_id:49605 AF371721 clone p-3796-23G3 
2.30.9.1.3.3022 OTU 1 seq
prokMSA_id:19521 AF132235 adhufec101 
2.30.9.1.3.3058 OTU 1 seq
prokMSA_id:33984 AF371830 clone p-595-a5 
2.30.9.1.3.3128 OTU 1 seq
prokMSA_id:50218 AF371751 clone p-206-o5 
2.30.9.1.3.31485 OTU 2 seqs
prokMSA_id:16041 AF104835 Ruminococcus flavefaciens str. LP-R1-Adx
prokMSA_id:16042 AF104834 Ruminococcus flavefaciens str. LP-C14-Adx
2.30.9.1.3.31886 OTU 2 seqs
prokMSA_id:16078 AB009169 clone RFN10
prokMSA_id:16079 AB009210 clone RFN63
2.30.9.1.3.3239 OTU 1 seq
prokMSA_id:73132 AJ488093 clone IIIA-3
2.30.9.1.3.32362 OTU 10 seqs
prokMSA_id:16025 L76603 Ruminococcus flavefaciens str. C94 ATCC 19208
prokMSA_id:16035 X85097 Ruminococcus flavefaciens str. C94 ATCC 19208
prokMSA_id:16038 AB009234 clone RFN88
prokMSA_id:16039 AF104844 Ruminococcus flavefaciens str. FD-1
prokMSA_id:16064 X83430 Ruminococcus flavefaciens str. C94 NCFB 2213
prokMSA_id:16065 AF104846 Ruminococcus flavefaciens str. Y1
prokMSA_id:16066 AF104841 Ruminococcus flavefaciens str. AR72
prokMSA_id:16068 AF030447 Ruminococcus flavefaciens str. 007; LRC017
prokMSA_id:16069 AF030448 Ruminococcus flavefaciens str. 4; LRC083
prokMSA_id:16070 AF030450 Ruminococcus flavefaciens str. 17
2.30.9.1.3.32394 OTU 2 seqs
prokMSA_id:46910 AF371762 clone p-2239-s959-3 
prokMSA_id:49817 AF371763 clone p-594-a5 
2.30.9.1.3.3249 OTU 1 seq
prokMSA_id:43052 AF371774 clone p-878-a5 
2.30.9.1.3.32465 OTU 4 seqs
prokMSA_id:19113 AB040497 Oscillospira guillermondii clone:OSC3
prokMSA_id:21464 AB040499 Oscillospira guillermondii clone:OSC5
prokMSA_id:31587 AB040495 Oscillospira guillermondii clone:OSC1
prokMSA_id:49276 AB040498 Oscillospira guillermondii clone:OSC4
2.30.9.1.3.32544 OTU 2 seqs
prokMSA_id:22844 AF371746 clone p-641-a5 
prokMSA_id:47737 AF371745 clone p-886-a5 
2.30.9.1.3.32631 OTU 2 seqs
prokMSA_id:16053 L76596 Ruminococcus callidus ATCC 27760
prokMSA_id:16054 X85100 Ruminococcus callidus
2.30.9.1.3.32783 OTU 15 seqs
prokMSA_id:17499 AF371729 clone p-2203-s959-3 
prokMSA_id:18520 AF371728 clone p-1720-b3 
prokMSA_id:26836 AF371731 clone p-2423-55G5 
prokMSA_id:27866 AJ413954 Fusobacterium prausnitzii strain ATCC 27768
prokMSA_id:28428 AF371730 clone p-2557-9F5 
prokMSA_id:31395 AJ270470 Butyrate-producing L2-6 
prokMSA_id:35563 AJ408966 clone HuCA11
prokMSA_id:37047 AF371726 clone p-1706-b3 
prokMSA_id:37658 AF371727 clone p-1721-b3 
prokMSA_id:39948 AF371723 clone p-366-a3 
prokMSA_id:40793 AJ409002 clone HuCB29
prokMSA_id:45687 AF371724 clone p-2840-6C5 
prokMSA_id:53461 AF371733 clone p-1749-b3 
prokMSA_id:72568 AF132236 adhufec113 
prokMSA_id:74119 AJ408973 clone HuCA25
2.30.9.1.3.32959 OTU 6 seqs
prokMSA_id:46933 AF371715 clone p-2559-9F5 
prokMSA_id:49343 AF132237 adhufec13 
prokMSA_id:56565 AF530318 clone cadhufec030h7 
prokMSA_id:81198 AY169430 Faecalibacterium prausnitzii clone 1-88 
prokMSA_id:81552 AY169429 Faecalibacterium prausnitzii clone 1-84 
prokMSA_id:82053 AY169427 Faecalibacterium prausnitzii clone 1-79 
2.30.9.1.3.33299 OTU 2 seqs
prokMSA_id:16652 AJ408991 clone HuCB7
prokMSA_id:27791 AF371800 clone p-2053-s959-5 
2.30.9.1.3.33954 OTU 4 seqs
prokMSA_id:16076 X85099 Ruminococcus bromii
prokMSA_id:23588 AF371771 clone p-2452-18B5 
prokMSA_id:42426 AF132247 adhufec21 
prokMSA_id:61082 AF530317 clone cadhufec014h7 
2.30.9.1.3.3426 OTU 1 seq
prokMSA_id:42458 AF371741 clone p-1699-b3 
2.30.9.1.3.3509 OTU 1 seq
prokMSA_id:42480 AB034033 rumen 3C0d-15 
2.30.9.1.3.35489 OTU 14 seqs
prokMSA_id:24554 AF376204 ckncm300-B2-4 
prokMSA_id:26738 AF376201 ckncm297-B1-1 
prokMSA_id:34145 AF376219 ckncm315-B3-32 
prokMSA_id:36483 AF376213 ckncm309-B3-39 
prokMSA_id:71012 AF376212 ckncm308-B6-4 
prokMSA_id:71071 AF376203 ckncm299-B6-29 
prokMSA_id:72195 AF376207 ckncm303-B3-1 
prokMSA_id:72853 AF376215 ckncm311-B3-45 
prokMSA_id:72938 AF376210 ckncm306-B3-19 
prokMSA_id:73168 AF376211 ckncm307-B-6-40 
prokMSA_id:73368 AF376202 ckncm298-B3-17 
prokMSA_id:73521 AF376206 ckncm302-B3-11 
prokMSA_id:73770 AF376208 ckncm304-B3-9 
prokMSA_id:73826 AF376205 ckncm301-B3-28 
2.30.9.1.3.3788 OTU 1 seq
prokMSA_id:19611 AF371779 clone p-1674-b3 
2.30.9.1.3.379 OTU 1 seq
prokMSA_id:72147 AF376220 ckncm316-B4-5 
2.30.9.1.3.38081 OTU 2 seqs
prokMSA_id:51893 AB050851 CB25 
prokMSA_id:69800 AF376214 ckncm310-B6-79 
2.30.9.1.3.3916 OTU 1 seq
prokMSA_id:81041 AB100492 Clostridiaceae clone: Rs-084
2.30.9.1.3.4033 OTU 1 seq
prokMSA_id:73205 AF376223 ckncm319-B7-19 
2.30.9.1.3.4126 OTU 1 seq
prokMSA_id:20289 AJ229190 from anoxic bulk soil clone BSV28
2.30.9.1.3.4742 OTU 1 seq
prokMSA_id:19747 AB034029 rumen 4C0d-16 
2.30.9.1.3.4745 OTU 1 seq
prokMSA_id:81110 AB100476 Clostridiaceae clone: Rs-093
2.30.9.1.3.4762 OTU 1 seq
prokMSA_id:26978 AF371767 clone p-1741-b3 
2.30.9.1.3.5274 OTU 1 seq
prokMSA_id:66186 AJ488078 clone IB-18
2.30.9.1.3.5278 OTU 1 seq
prokMSA_id:66188 AJ488075 clone IA-24
2.30.9.1.3.5407 OTU 1 seq
prokMSA_id:34823 AF371937 clone p-5152-2Wb3 
2.30.9.1.3.5808 OTU 1 seq
prokMSA_id:20449 AJ295664 Irt-JG1-53 
2.30.9.1.3.6487 OTU 1 seq
prokMSA_id:81319 AB100487 Clostridiaceae clone: Rs-039
2.30.9.1.3.6826 OTU 1 seq
prokMSA_id:29029 AF371743 clone p-1293-a5 
2.30.9.1.3.6935 OTU 1 seq
prokMSA_id:36271 Y18181 Clostridium methylpentosum strain DSM 5476
2.30.9.1.3.7050 OTU 1 seq
prokMSA_id:72970 AF132277 adhufec58 
2.30.9.1.3.7068 OTU 1 seq
prokMSA_id:72987 AJ408957 clone HuCA1
2.30.9.1.3.7134 OTU 1 seq
prokMSA_id:82017 AB100494 Clostridiaceae clone: Rs-L18
2.30.9.1.3.7133 OTU 1 seq
prokMSA_id:82016 AB100485 Clostridiaceae clone: Rs-114
2.30.9.1.3.7179 OTU 1 seq
prokMSA_id:51306 AF371734 clone p-2576-9F5 
2.30.9.1.3.7212 OTU 1 seq
prokMSA_id:21232 AF371769 clone p-2484-18B5 
2.30.9.1.3.722 OTU 1 seq
prokMSA_id:33668 AF371742 clone p-417-o3 
2.30.9.1.3.7252 OTU 1 seq
prokMSA_id:81416 AB100488 Clostridiaceae clone: Rs-061
2.30.9.1.3.7371 OTU 1 seq
prokMSA_id:50712 AF371934 clone p-5014-2Wa5 
2.30.9.1.3.7372 OTU 1 seq
prokMSA_id:44151 AF371804 clone p-1487-b5 
2.30.9.1.3.7479 OTU 1 seq
prokMSA_id:73606 AF376230 ckncm326-B4-13 
2.30.9.1.3.7506 OTU 1 seq
prokMSA_id:44184 AF371761 clone p-3778-23G3 
2.30.9.1.3.7737 OTU 1 seq
prokMSA_id:36378 AF371777 clone p-1528-b5 
2.30.9.1.3.7908 OTU 1 seq
prokMSA_id:35786 AF371778 clone p-2498-18B5 
2.30.9.1.3.8133 OTU 1 seq
prokMSA_id:81523 AB100490 Clostridiaceae clone: Rs-072
2.30.9.1.3.8280 OTU 1 seq
prokMSA_id:81566 AY218560 clone KD1-35 
2.30.9.1.3.8402 OTU 1 seq
prokMSA_id:20765 AF371768 clone p-3275-A42 
2.30.9.1.3.8807 OTU 1 seq
prokMSA_id:22018 AJ409008 clone HuCA10
2.30.9.1.3.9065 OTU 1 seq
prokMSA_id:81634 AB100469 Clostridiaceae clone: Rs-109
2.30.9.1.3.9085 OTU 1 seq
prokMSA_id:44335 AB034034 rumen 3C0d-19 
2.30.9.1.3.9232 OTU 1 seq
prokMSA_id:74461 AF357573 mpn-isolate group 25 
2.30.9.1.3.9256 OTU 1 seq
prokMSA_id:36503 AF371801 clone p-4322-4Wa3 
2.30.9.1.4 STR.16SX_SUBGROUP 4 seqs
2.30.9.1.4.13448 OTU 1 seq
prokMSA_id:16087 AJ240981 clone Sva0855
2.30.9.1.4.30003 OTU 2 seqs
prokMSA_id:16082 U27711 str. 16SX-2
prokMSA_id:16085 U27710 str. 16SX-1
2.30.9.1.4.8549 OTU 1 seq
prokMSA_id:43679 AJ229231 from anoxic bulk soil clone BSV87
2.30.9.2 C.BOTULINUM_GROUP 227 seqs
2.30.9.2.1 CCS.OWENSENSIS_SUBGROUP 14 seqs
2.30.9.2.1.13449 OTU 1 seq
prokMSA_id:16088 U80596 Caldicellulosiruptor owensensis str. OL ATCC 700167
2.30.9.2.1.13478 OTU 1 seq
prokMSA_id:16095 AJ004811 Caldicellulosiruptor kristjanssonii str. I77R1B
2.30.9.2.1.30010 OTU 4 seqs
prokMSA_id:16089 L35151 str. Rt8B.4
prokMSA_id:16092 L09186 str. Ok9.B1
prokMSA_id:16096 L09184 str. Rt8.B7
prokMSA_id:16102 L09185 str. Rt8. B15
2.30.9.2.1.30040 OTU 2 seqs
prokMSA_id:16098 L09178 Caldicellulosiruptor saccharolyticus str. Tp8T.6.3.3.1 ATCC 
prokMSA_id:16099 L09179 str. COMP.B1
2.30.9.2.1.30034 OTU 2 seqs
prokMSA_id:16093 L09183 Thermoanaerobacter "cellulolyticus" str. NA 10 IFO 14436
prokMSA_id:16100 L09183 Thermoanaerobacter "cellulolyticus" str. NA 10 IFO 14436
2.30.9.2.1.30638 OTU 2 seqs
prokMSA_id:16101 L09182 str. Wai35 B1
prokMSA_id:16104 L09181 str. RI2.B1
2.30.9.2.1.30639 OTU 2 seqs
prokMSA_id:16103 ?. L09180 "Anaerocellum thermophilum" str. Z-1203
prokMSA_id:16105 ?. L09180 "Anaerocellum thermophilum" str. Z-1203
2.30.9.2.2 OX.PFENNIGII 1 seq
2.30.9.2.2.3941 OTU 1 seq
prokMSA_id:49771 AJ229181 from anoxic bulk soil clone BSV07
2.30.9.2.3 CLR.FERVIDUS_SUBGROUP 7 seqs
2.30.9.2.3.13662 OTU 1 seq
prokMSA_id:68459 AF489534 Caloramator uzoniensis 
2.30.9.2.3.13886 OTU 1 seq
prokMSA_id:16109 X90488 Caloramator proteolyticus str. Uruguayensis
2.30.9.2.3.13885 OTU 1 seq
prokMSA_id:16108 X75788 Caloramator indicus str. IndiB4 ACM 3982
2.30.9.2.3.13898 OTU 1 seq
prokMSA_id:16110 AF104215 Caloramator coolhaasii str. Z
2.30.9.2.3.16146 OTU 1 seq
prokMSA_id:32182 Y18179 Clostridium cylindrosporum strain DSM 605
2.30.9.2.3.2011 OTU 1 seq
prokMSA_id:34407 AF181848 Caloramator viterbiensis 
2.30.9.2.3.9661 OTU 1 seq
prokMSA_id:45031 AJ229206 from anoxic bulk soil clone BSV54
2.30.9.2.5 C.THERMOBUTYRICUM_SUBGROUP 18 seqs
2.30.9.2.5.11810 OTU 1 seq
prokMSA_id:23003 AF371834 clone p-2513-18B5 
2.30.9.2.5.13030 OTU 1 seq
prokMSA_id:59913 AY133082 spirochete clone ccslm210 
2.30.9.2.5.13916 OTU 1 seq
prokMSA_id:16129 X75272 Clostridium grantii str. A-1
2.30.9.2.5.13931 OTU 1 seq
prokMSA_id:16130 AF129867 clone HB69
2.30.9.2.5.13932 OTU 1 seq
prokMSA_id:16131 AF129865 clone HA16
2.30.9.2.5.17709 OTU 1 seq
prokMSA_id:78194 AB088963 Clostridiaceae clone:Rs-K21
2.30.9.2.5.32351 OTU 5 seqs
prokMSA_id:16125 C. X68315 Clostridium botulinum str. 468 toxin 
prokMSA_id:22235 AB035087 Clostridium novyi 
prokMSA_id:23882 Y18173 Clostridium haemolyticum strain DSM 5565
prokMSA_id:28961 AB041865 Clostridium novyi strain:ATCC27323
prokMSA_id:29512 AB037910 Clostridium haemolyticum 
2.30.9.2.5.33403 OTU 2 seqs
prokMSA_id:16120 X76744 Clostridium homopropionicum DSM 5847
prokMSA_id:16121 X95274 Clostridium sp. LMG 16094
2.30.9.2.5.42146 OTU 4 seqs
prokMSA_id:16123 X68188 Clostridium novyi str. A NCTC 538
prokMSA_id:16124 L37594 Clostridium novyi str. 151 L.S. McClung ATCC 17861
prokMSA_id:19010 AB041866 Clostridium novyi strain:ATCC19402
prokMSA_id:29673 AB045606 Clostridium novyi 
2.30.9.2.5.5303 OTU 1 seq
prokMSA_id:66191 AJ488074 clone IA-23
2.30.9.2.6 C.BOTULINUM_SUBGROUP 9 seqs
2.30.9.2.6.13133 OTU 1 seq
prokMSA_id:31072 AJ229222 from anoxic bulk soil clone BSV78
2.30.9.2.6.13936 OTU 1 seq
prokMSA_id:16138 X77835 Clostridium magnum DSM 2767
2.30.9.2.6.13952 OTU 1 seq
prokMSA_id:16145 AJ009473 clone SJA-65
2.30.9.2.6.13951 OTU 1 seq
prokMSA_id:16144 L08062 Clostridium tyrobutyricum NIZO 51
2.30.9.2.6.16248 OTU 1 seq
prokMSA_id:17161 Y18178 Clostridium autoethanogenum strain DSM 10061
2.30.9.2.6.34478 OTU 3 seqs
prokMSA_id:16132 X73442 Clostridium putrificum str. 2318 ATCC 25784
prokMSA_id:16140 X68189 Clostridium sporogenes str. 388 ATCC 3584
prokMSA_id:16148 L37585 Clostridium botulinum ATCC 25763
2.30.9.2.6.6357 OTU 1 seq
prokMSA_id:34959 AJ237756 Clostridium acidisoli strain CK74
2.30.9.2.8 C.COCHLEARIUM_SUBGROUP 19 seqs
2.30.9.2.8.13846 OTU 1 seq
prokMSA_id:60609 AF407688 clone R16 
2.30.9.2.8.13989 OTU 1 seq
prokMSA_id:16163 Y15985 Clostridium sp. str. RPec1
2.30.9.2.8.13992 OTU 1 seq
prokMSA_id:16166 X74770 Clostridium tetani NCTC 279
2.30.9.2.8.15129 OTU 1 seq
prokMSA_id:30766 AJ229202 from anoxic bulk soil clone BSV50
2.30.9.2.8.19509 OTU 1 seq
prokMSA_id:33242 AF371831 clone p-4524-4Wb3 
2.30.9.2.8.30078 OTU 2 seqs
prokMSA_id:21985 AJ408959 clone HuCA3
prokMSA_id:44983 AJ408962 clone HuCA6
2.30.9.2.8.30744 OTU 2 seqs
prokMSA_id:16157 S46737 Clostridium tetanomorphum str. H1 NCIMB 11547
prokMSA_id:16159 X68184 Clostridium tetanomorphum str. H1 NCIMB 11547
2.30.9.2.8.30745 OTU 2 seqs
prokMSA_id:16158 AF001732 clone RC30
prokMSA_id:27711 AB034023 rumen 4C0d-10 
2.30.9.2.8.34591 OTU 2 seqs
prokMSA_id:16161 X76741 Clostridium sp
prokMSA_id:16162 X96736 Clostridium pascui str. cm19 DSM 10365
2.30.9.2.8.42673 OTU 3 seqs
prokMSA_id:79176 AE015936 Clostridium tetani E88 section 1 of 10 of the complete genom
prokMSA_id:79236 AE015937 Clostridium tetani E88 section 2 of 10 of the complete genom
prokMSA_id:79542 AE015945 Clostridium tetani E88 section 10 of 10 of the complete geno
2.30.9.2.8.431 OTU 1 seq
prokMSA_id:71518 AB081585 Clostridiaceae str. A4d 
2.30.9.2.8.4943 OTU 1 seq
prokMSA_id:36004 AJ229185 from anoxic bulk soil clone BSV20
2.30.9.2.8.9045 OTU 1 seq
prokMSA_id:44328 AJ250960 Clostridium sp. strain ccug 42741
2.30.9.2.9 C.SUBTERMINALE_SUBGROUP 25 seqs
2.30.9.2.9.11689 OTU 1 seq
prokMSA_id:29618 AJ297443 Clostridium aff. estertheticum A-1/C-an/I 
2.30.9.2.9.13855 OTU 1 seq
prokMSA_id:60611 AF407686 clone R10 
2.30.9.2.9.14018 OTU 1 seq
prokMSA_id:16174 S46734 Clostridium estertheticum NCIMB 12511
2.30.9.2.9.14471 OTU 1 seq
prokMSA_id:60735 AJ506120 Clostridium bowmanii strain DSM 14206 clone 16
2.30.9.2.9.14472 OTU 1 seq
prokMSA_id:60737 AJ506119 Clostridium bowmanii strain DSM 14206 clone 11
2.30.9.2.9.14753 OTU 1 seq
prokMSA_id:75821 AY167950 Swine manure RT-8B 
2.30.9.2.9.17104 OTU 1 seq
prokMSA_id:46741 AF332717 clone UASB_brew_B68 
2.30.9.2.9.19059 OTU 1 seq
prokMSA_id:78350 AB088991 clone:Rs-Q18
2.30.9.2.9.33927 OTU 7 seqs
prokMSA_id:16178 X68316 Clostridium argentinense ATCC 27322
prokMSA_id:16179 G. X68317 Clostridium argentinense str. 113/30 toxin 
prokMSA_id:16181 M59087 Clostridium argentinense ATCC 27322
prokMSA_id:16182 X68451 Clostridium subterminale NCIMB 10746
prokMSA_id:16183 X78074 Clostridium sp. DSM 1975
prokMSA_id:31319 AF241842 Clostridium subterminale isolate DSM 2636 
prokMSA_id:39409 AF241843 Clostridium subterminale isolate DSM 758 
2.30.9.2.9.34585 OTU 8 seqs
prokMSA_id:16169 L37595 Clostridium subterminale ATCC 25774
prokMSA_id:16171 AF191249 str. 6
prokMSA_id:16172 AF191250 str. 25
prokMSA_id:16173 AF191251 str. 45
prokMSA_id:20268 AJ295661 Clostridium sp. Irt-JG1-73 
prokMSA_id:30228 AF241844 Clostridium subterminale isolate DSM 6970 
prokMSA_id:38588 AY024332 Clostridium thiosulforeducens 
prokMSA_id:81138 AY217406 PTCE-T2A 7H 
2.30.9.2.9.5849 OTU 1 seq
prokMSA_id:50541 AJ297442 Clostridium aff. estertheticum A-1/C-an/C1 
2.30.9.2.9.817 OTU 1 seq
prokMSA_id:79436 AY187622 Clostridium tunisiense 
2.30.9.2.10 C.ACETOBUTYLICUM_SUBGROUP 10 seqs
2.30.9.2.10.1267 OTU 1 seq
prokMSA_id:72289 X78070 C.acetobutylicum ATCC 824 T 
2.30.9.2.10.14084 OTU 1 seq
prokMSA_id:16190 X78072 Clostridium acetobutylicum NCDO 1712
2.30.9.2.10.14063 OTU 1 seq
prokMSA_id:16189 U16166 Clostridium acetobutylicum ATCC 824
2.30.9.2.10.14061 OTU 1 seq
prokMSA_id:16187 X78070 Clostridium acetobutylicum ATCC 824
2.30.9.2.10.14059 OTU 1 seq
prokMSA_id:16185 X73439 Clostridium collagenovorans DSM 3089
2.30.9.2.10.33067 OTU 5 seqs
prokMSA_id:16191 X78071 Clostridium acetobutylicum DSM 1731
prokMSA_id:18375 AF270501 Clostridium felsineum NCIMB 10690 
prokMSA_id:20598 AF270502 Clostridium felsineum DSM 794 
prokMSA_id:46897 Y18172 Clostridium roseum strain DSM 6424
prokMSA_id:47394 NC_003030 Clostridium acetobutylicum ATCC824 complete genome
2.30.9.2.11 C.BARATI_SUBGROUP 124 seqs
2.30.9.2.11.1 C.CADAVERIS_SUBGROUP 7 seqs
2.30.9.2.11.1.14096 OTU 1 seq
prokMSA_id:16195 X80834 unnamed organism
2.30.9.2.11.1.29022 OTU 6 seqs
prokMSA_id:16192 D86305 unnamed organism
prokMSA_id:16193 X77814 unnamed organism
prokMSA_id:16194 X87244 unnamed organism
prokMSA_id:34378 AJ308387 clone S25-6
prokMSA_id:70665 E11861 of a segment 
prokMSA_id:72493 E11886 of novel Segmented filamentous BAL01
2.30.9.2.11.2 C.ALGIDICARNIS_SUBGROUP 5 seqs
2.30.9.2.11.2.14098 OTU 1 seq
prokMSA_id:16198 X76740 Clostridium intestinalis DSM 6191
2.30.9.2.11.2.14456 OTU 1 seq
prokMSA_id:16200 X77676 Clostridium algidicarnis NCFB 2931
2.30.9.2.11.2.30002 OTU 2 seqs
prokMSA_id:16199 AJ222546 Anaerobacter polyendosporus
prokMSA_id:42703 Y18189 Anaerobacter polyendosporus strain DSM 5272
2.30.9.2.11.2.9244 OTU 1 seq
prokMSA_id:81682 AY208919 Clostridium fallax isolate VA24831_02 
2.30.9.2.11.3 C.PERFRINGENS_SUBGROUP 25 seqs
2.30.9.2.11.3.14460 OTU 1 seq
prokMSA_id:16204 X76650 Sarcina maxima str. K66 DSM 316
2.30.9.2.11.3.14459 OTU 1 seq
prokMSA_id:16203 D14151 Sarcina ventriculi str. VPI-s-7-31 GIFU 7886
2.30.9.2.11.3.32350 OTU 2 seqs
prokMSA_id:16201 X76649 Sarcina ventriculi DSM 286
prokMSA_id:16202 AF110272 Sarcina ventriculi
2.30.9.2.11.3.35332 OTU 21 seqs
prokMSA_id:16206 M69264 Clostridium perfringens str. CPN50 =rrnB operon H3 fragment
prokMSA_id:16210 Y12669 Clostridium perfringens str. antibioticNitrofurantoin-resist
prokMSA_id:18408 AF390549 Clostridium sp. AB&J 
prokMSA_id:26184 AF371845 clone p-4636-2Wa2 
prokMSA_id:46789 NC_003366 Clostridium perfringens complete genome
prokMSA_id:52947 AB045282 Clostridium perfringens operon 23S 5S genes complete sequenc
prokMSA_id:53902 AB045286 Clostridium perfringens rrnE operon 23S 5S genes complete se
prokMSA_id:54029 AB045285 Clostridium perfringens rrnD operon 23S 5S genes complete se
prokMSA_id:54412 AB045284 Clostridium perfringens rrnC operon 23S 5S genes complete se
prokMSA_id:54675 AB045283 Clostridium perfringens rrnB operon 23S 5S genes complete se
prokMSA_id:54809 AB045287 Clostridium perfringens rrnF operon 23S 5S genes complete se
prokMSA_id:54834 AB045288 Clostridium perfringens rrnG operon 23S 5S genes complete se
prokMSA_id:63982 AP003194 Clostridium perfringens str. 13 complete genome section 10/1
prokMSA_id:63983 AP003193 Clostridium perfringens str. 13 complete genome section 9/10
prokMSA_id:68917 AB045289 Clostridium perfringens rrnH operon tRNA-Ile 23S 5S genes co
prokMSA_id:68918 AB045290 Clostridium perfringens rrnI operon tRNA-Ile 23S 5S genes co
prokMSA_id:68919 AB045291 Clostridium perfringens rrnJ operon tRNA-Ile 23S 5S genes co
prokMSA_id:70420 AF018036 OI1612 
prokMSA_id:73346 AB075767 Clostridium perfringens 
prokMSA_id:75452 AY167965 Swine manure 37-3 
prokMSA_id:77120 AY167966 Swine manure 37-4 
2.30.9.2.11.4 C.AURANTIBUTYRICUM_SUBGROUP 35 seqs
2.30.9.2.11.4.13272 OTU 1 seq
prokMSA_id:76200 AJ420008 Clostridium colicanis strain 13634
2.30.9.2.11.4.14476 OTU 1 seq
prokMSA_id:16212 X68183 Clostridium aurantibutyricum str. 2038 NCIMB 10659
2.30.9.2.11.4.14484 OTU 1 seq
prokMSA_id:16219 X98395 Clostridium sp. str. WV6
2.30.9.2.11.4.14501 OTU 1 seq
prokMSA_id:16221 S46736 Clostridium aurantibutyricum str. 2038 NCIMB 10659
2.30.9.2.11.4.14509 OTU 1 seq
prokMSA_id:16227 X97432 Clostridium vincentii
2.30.9.2.11.4.14499 OTU 1 seq
prokMSA_id:16220 AF069742 Clostridium frigidicarnis str. SPL77A
2.30.9.2.11.4.14481 OTU 1 seq
prokMSA_id:16215 X75907 Clostridium paraputrificum ATCC 25780
2.30.9.2.11.4.14478 OTU 1 seq
prokMSA_id:16214 X76745 Clostridium quinii DSM 6736
2.30.9.2.11.4.14521 OTU 1 seq
prokMSA_id:16230 X77844 Clostridium celatum DSM 1785
2.30.9.2.11.4.14528 OTU 1 seq
prokMSA_id:16236 AJ245413 Clostridium tertium ATCC 14573
2.30.9.2.11.4.14532 OTU 1 seq
prokMSA_id:16239 AF092548 Clostridium gasigenes DSM 12272
2.30.9.2.11.4.16630 OTU 1 seq
prokMSA_id:40062 AB018184 multiforme 
2.30.9.2.11.4.17744 OTU 1 seq
prokMSA_id:47464 AF371843 clone p-2194-s959-3 
2.30.9.2.11.4.30663 OTU 2 seqs
prokMSA_id:16225 X73445 Clostridium paraputrificum ATCC 25780
prokMSA_id:16228 AB032556 Clostridium paraputrificum str. M-21
2.30.9.2.11.4.32378 OTU 2 seqs
prokMSA_id:16224 X71849 Clostridium cellulovorans DSM 3052
prokMSA_id:16231 X73438 Clostridium cellulovorans DSM 3052
2.30.9.2.11.4.32684 OTU 2 seqs
prokMSA_id:30877 AJ229211 from anoxic bulk soil clone BSV62
prokMSA_id:74580 AJ229226 from anoxic bulk soil clone BSV82
2.30.9.2.11.4.33370 OTU 2 seqs
prokMSA_id:16216 X76164 Clostridium longisporum DSM 8431
prokMSA_id:16223 X71850 Clostridium chartatabidum DSM 5482
2.30.9.2.11.4.35238 OTU 4 seqs
prokMSA_id:16213 X68174 Clostridium barati str. 2227 ATCC 27638
prokMSA_id:16232 X68175 Clostridium barati ATCC 43756
prokMSA_id:54713 AF371840 clone p-234-o5 
prokMSA_id:74851 AB018183 budayi 
2.30.9.2.11.4.3742 OTU 1 seq
prokMSA_id:34679 AF371841 clone p-2171-s959-3 
2.30.9.2.11.4.41500 OTU 3 seqs
prokMSA_id:35112 AF371932 clone p-4936-6Wb2 
prokMSA_id:41092 AF371837 clone p-2117-s959-2 
prokMSA_id:73073 AJ408995 clone HuCB15
2.30.9.2.11.4.41664 OTU 3 seqs
prokMSA_id:16218 U59278 Clostridium septicum ATCC 12464
prokMSA_id:16235 U51843 Clostridium chauvoei ATCC 10092
prokMSA_id:70497 U59278 Clostridium septicum 
2.30.9.2.11.4.42918 OTU 2 seqs
prokMSA_id:16234 X77842 Clostridium absonum DSM 599
prokMSA_id:31869 AB018185 nitritogenes 
2.30.9.2.11.4.4528 OTU 1 seq
prokMSA_id:41948 AF371842 clone p-2106-s959-2 
2.30.9.2.11.5 C.BUTYRICUM_SUBGROUP 52 seqs
2.30.9.2.11.5.10674 OTU 1 seq
prokMSA_id:75278 AY168741 clone HC-31 
2.30.9.2.11.5.13010 OTU 1 seq
prokMSA_id:59906 AY133085 low G+C Gram-positive clone ccslm2120 
2.30.9.2.11.5.14551 OTU 1 seq
prokMSA_id:16245 L37592 Clostridium botulinum str. 36208 ATCC 9564
2.30.9.2.11.5.14626 OTU 1 seq
prokMSA_id:16273 AB009208 clone RFN54
2.30.9.2.11.5.1492 OTU 1 seq
prokMSA_id:49421 AJ229186 from anoxic bulk soil clone BSV21
2.30.9.2.11.5.2402 OTU 1 seq
prokMSA_id:49549 AB020191 Clostridium beijerinckii strain:JCM 7847
2.30.9.2.11.5.2545 OTU 1 seq
prokMSA_id:73000 AF275949 Clostridium neonatale 
2.30.9.2.11.5.2976 OTU 1 seq
prokMSA_id:27375 AJ276992 Clostridium uliginosum strain CK55
2.30.9.2.11.5.39513 OTU 2 seqs
prokMSA_id:16276 Y15984 Clostridium sp. str. RXyl1
prokMSA_id:66612 AB084626 Clostridiaceae str. KB6 
2.30.9.2.11.5.41562 OTU 3 seqs
prokMSA_id:32184 AF127024 Clostridium putrefaciens 
prokMSA_id:37683 Y18177 Clostridium putrifaciens strain DSM 1291
prokMSA_id:41634 AF127023 Clostridium algidicarnis 
2.30.9.2.11.5.42228 OTU 33 seqs
prokMSA_id:16243 X77843 Clostridium caliptrosporum DSM 5905
prokMSA_id:16248 U16122 Clostridium saccharoperbutylacetonicum str. N1-4 ATCC 13564
prokMSA_id:16250 X68180 Clostridium beijerinckii NCIMB 9362
prokMSA_id:16252 X68178 Clostridium butyricum str. E.VI.3.6.1 NCIMB 8082
prokMSA_id:16253 AJ002592 Clostridium butyricum str. strain MW8
prokMSA_id:16255 X68176 Clostridium butyricum ATCC 43755
prokMSA_id:16256 AF005092 Clostridium SP3 str. SP3
prokMSA_id:16258 X76742 Clostridium corinoforum DSM 5906
prokMSA_id:16259 X68179 Clostridium beijerinckii DSM 791
prokMSA_id:16261 X68177 Clostridium butyricum str. MMP3 DSM 2478
prokMSA_id:16263 X68182 Clostridium beijerinckii NCIMB 8052
prokMSA_id:16264 X76749 Clostridium favososporum str. BKM B-1360 DSM 5907
prokMSA_id:16266 X78073 Clostridium acetobutylicum NCP 262
prokMSA_id:16268 S46735 Clostridium beijerinckii NCIMB 8052
prokMSA_id:16270 U16147 Clostridium acetobutylicum NCP 262
prokMSA_id:16271 X71857 Clostridium puniceum DSM 2619
prokMSA_id:16274 AJ229244 Clostridium VeCb10 str. VeCb10
prokMSA_id:16275 U16165 Clostridium beijerinckii NCIMB 8052
prokMSA_id:16277 X81021 Clostridium beijerinckii NCIMB 8052
prokMSA_id:19926 AJ289706 Clostridium butyricum strain IBUN 64A
prokMSA_id:21382 AJ289705 Clostridium butyricum strain IBUN 125C
prokMSA_id:27405 Y18171 Clostridium roseum strain DSM 51
prokMSA_id:32781 AB020188 Clostridium beijerinckii strain:JCM 7839
prokMSA_id:33631 AJ289704 Clostridium butyricum strain IBUN 22A
prokMSA_id:34846 AB020189 Clostridium beijerinckii strain:JCM 7844
prokMSA_id:39254 AB020190 Clostridium beijerinckii strain:JCM 7845
prokMSA_id:47159 AB020187 Clostridium beijerinckii strain:JCM 7833
prokMSA_id:52588 AF316590 Clostridium butyricum 
prokMSA_id:67022 AJ458420 Clostridium butyricum strain VPI3266
prokMSA_id:67023 AJ458419 Clostridium butyricum strain E5
prokMSA_id:67024 AJ458418 Clostridium butyricum strain DSM 5431
prokMSA_id:67025 AJ458417 Clostridium butyricum strain DSM 5430
prokMSA_id:71927 AB075768 Clostridium butyricum 
2.30.9.2.11.5.4249 OTU 1 seq
prokMSA_id:35306 AJ229230 from anoxic bulk soil clone BSV86
2.30.9.2.11.5.6372 OTU 1 seq
prokMSA_id:27748 AF418957 clone HTE5 
2.30.9.2.11.5.6663 OTU 1 seq
prokMSA_id:20553 AJ229218 from anoxic bulk soil clone BSV74
2.30.9.2.11.5.8251 OTU 1 seq
prokMSA_id:51473 AB062807 clone:BCf10-24
2.30.9.2.11.5.8446 OTU 1 seq
prokMSA_id:37089 AJ229224 from anoxic bulk soil clone BSV80
2.30.9.2.11.5.8739 OTU 1 seq
prokMSA_id:35865 AF371835 clone p-406-o3 
2.30.99 VARIOUS 10 seqs
2.30.99.30081 OTU 2 seqs
prokMSA_id:60012 AB091328 clone:UT-2
prokMSA_id:60013 AB091327 clone:UT-1
2.30.99.32632 OTU 2 seqs
prokMSA_id:44578 AF190460 Symbiobacterium toebii 
prokMSA_id:54890 AB004913 Symbiobacterium thermophilum 
2.30.99.42806 OTU 6 seqs
prokMSA_id:77725 AB089019 Clostridiaceae clone:Rs-J36
prokMSA_id:77865 AB089014 Clostridiaceae clone:Rs-A28
prokMSA_id:77906 AB089013 Clostridiaceae clone:Rs-D61
prokMSA_id:78141 AB089015 Clostridiaceae clone:Rs-D04
prokMSA_id:78366 AB089017 Clostridiaceae clone:Rs-P50
prokMSA_id:81326 AB100466 Clostridiaceae clone: Rs-L02
2.99 VARIOUS 17 seqs
2.99.31955 OTU 3 seqs
prokMSA_id:1524 AB004577 clone TG25
prokMSA_id:1525 AB004578 clone TG33
prokMSA_id:1704 AB004576 clone TG14
2.99.34821 OTU 7 seqs
prokMSA_id:1783 AF013550 clone S023
prokMSA_id:3686 Z95711 clone 32-11
prokMSA_id:3692 Z95722 clone RB41
prokMSA_id:16287 Z95730 species clone iii3-16
prokMSA_id:21414 Z95712 species clone 32-19
prokMSA_id:24596 Z95715 species clone RB112
prokMSA_id:78630 AY177759 Acidobacteria isolate OF23 
2.99.40317 OTU 2 seqs
prokMSA_id:66623 AF500277 Pseudomonas sp. SMCC B0205 
prokMSA_id:69818 AF523985 clone FW47 
2.99.42663 OTU 2 seqs
prokMSA_id:40888 AF418968 clone HT2F11 
prokMSA_id:60573 AF407728 clone B83 
2.99.42767 OTU 3 seqs
prokMSA_id:63100 AY093483 clone MB-C2-152 
prokMSA_id:63111 AY093471 clone MB-B2-106 
prokMSA_id:63116 AY093467 clone MB-A2-137