Wed Feb 11 04:00:01 EST 2009
SVN updating
/opt/bviren/dayabay/nightly/NuWa-trunk /opt/bviren/dayabay/nightly

Fetching external item into 'lcgcmt'
External at revision 5501.

Fetching external item into 'gaudi'
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Fetching external item into 'lhcb'
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Fetching external item into 'dybgaudi'
U    dybgaudi/DybRelease/cmt/requirements
U    dybgaudi/DybKernel/DybKernel/DybAlgorithmImp.h
U    dybgaudi/DybKernel/DybKernel/DybAlgorithm.h
U    dybgaudi/Simulation/Fifteen/ElecSimProc/src/ElecSimProc.cc
U    dybgaudi/Simulation/Fifteen/TrigReadProc/src/TrigReadProc.cc
U    dybgaudi/Simulation/Fifteen/TrigReadProc/src/TrigReadProc.h
U    dybgaudi/Simulation/Fifteen/SingleLoader/src/SingleLoader.cc
U    dybgaudi/Simulation/Fifteen/DetSimProc/src/DetSimProc.cc
U    dybgaudi/Simulation/Fifteen/Gnrtr/src/Gnrtr.cc
U    dybgaudi/Generators/Muon/app/muon_generator.cc
Updated external to revision 5501.

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Updated to revision 5501.
/opt/bviren/dayabay/nightly
Done svn updating
Building manual
/opt/bviren/dayabay/nightly/NuWa-trunk/dybgaudi/Documentation/OfflineUserManual /opt/bviren/dayabay/nightly
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. 
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=== Reference `ch:framework' on page 1 undefined 

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[]\OT1/cmr/m/n/10 Inherit from \OT1/cmtt/m/n/10 GaudiAlgorithm \OT1/cmr/m/n/10 
or if you will pro-duce data from \OT1/cmtt/m/n/10 DybAlgorithm\OT1/cmr/m/n/10 
. 
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[]\OT1/cmr/m/n/10 Subclasses of \OT1/cmtt/m/n/10 DybAlgorithm \OT1/cmr/m/n/10 s
hould pro-vide \OT1/cmtt/m/n/10 initialize\OT1/cmr/m/n/10 , \OT1/cmtt/m/n/10 ex
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[]\OT1/cmr/m/n/10 Each job op-tion \OT1/cmtt/m/n/10 .py \OT1/cmr/m/n/10 file th
at you pass on the com-mand line will be \OT1/cmtt/m/n/10 eval\OT1/cmr/m/n/10 u
ated
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ef-er-ences in the per-sis-tent ob-ject and \OT1/cmtt/m/n/10 fillObjRefs

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[]\OT1/cmr/m/n/10 describes a hi-er-ar-chy of dis-tinct, placed ``touch-able'' 
vol-umes (Geant4
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[]\OT1/cmr/m/n/10 the pointer to the \OT1/cmtt/m/n/10 DetectorElement \OT1/cmr/
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[]    \OT1/cmtt/m/n/10 historian = app.property("GiGa.GiGaStepActionSequence.Hi
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-sponds to a []\OT1/cmtt/m/n/10 G4Step \OT1/cmr/m/n/10 (or, more pre-cisely, a 
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[]    \OT1/cmtt/m/n/10 # Make vertices only when a particle crosses a volume bo
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here

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[]    \OT1/cmtt/m/n/10 const SimUnobservableStatisticsHeader* h = header->unobs
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\OT1/cmr/m/n/10 ac-tu-ally use lightweight ob-jects called []\OT1/cmtt/m/n/10 S
imTrackReference \OT1/cmr/m/n/10 and []\OT1/cmtt/m/n/10 SimVertexReference\OT1/
cmr/m/n/10 .
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[]\OT1/cmr/m/n/10 The DumpUnob-serv-ableStatis-tic-sAlg al-go-rithm sim-ply pri
nts out the counts,
)) [73 <../fig/drawhistoryalg_tracks.pdf>] [74 <../fig/drawhistoryalg_tracksand
vertices.pdf>] (./electronics/main.tex) [75] [76] (./trigger/main.tex
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[]                            \OT1/cmtt/m/n/10 const DayaBay::ElecHeader& elecH
eader);[] 
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[]\OT1/cmr/m/n/10 explains how new data is added to ex-ist-ing ta-bles in the d
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[]    \OT1/cmtt/m/n/10 UnObserver = app.property("GiGa.GiGaStepActionSequence.U
nObserverStepAction")[] 

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[]        \OT1/cmtt/m/n/10 ["PhotonsCreated" , "E" , "StepNumber==1 and pdg==20
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D==1)"  ][] 
[58]
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[]    \OT1/cmtt/m/n/10 const SimUnobservableStatisticsHeader* h = header->unobs
ervableStatistics();[] 
[59]
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<../fig/SimTrack_and_SimVertex.pdf, id=1222, 370.38374pt x 544.0325pt>
<use ../fig/SimTrack_and_SimVertex.pdf>

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\OT1/cmr/m/n/10 ac-tu-ally use lightweight ob-jects called []\OT1/cmtt/m/n/10 S
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cmr/m/n/10 .
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<use ../fig/History_Pruning2.pdf> [61] [62 <../fig/SimTrack_and_SimVertex.pdf>]
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\OT1/cmr/m/n/10 Each com-par-i-son must be of the form []\OT1/cmtt/m/n/10 <PARA
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[64]
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[65]
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(./detector/parameter_table.tex
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[71]) <../fig/drawhistoryalg_tracks.pdf, id=1442, 1484.54625pt x 882.29625pt>
<use ../fig/drawhistoryalg_tracks.pdf>
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[72]
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[]\OT1/cmr/m/n/10 The DumpUnob-serv-ableStatis-tic-sAlg al-go-rithm sim-ply pri
nts out the counts,
)) [73 <../fig/drawhistoryalg_tracks.pdf>] [74 <../fig/drawhistoryalg_tracksand
vertices.pdf>] (./electronics/main.tex) [75] [76] (./trigger/main.tex
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[78]
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[]                            \OT1/cmtt/m/n/10 const DayaBay::ElecHeader& elecH
eader);[] 
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(./database/database_interface.tex
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[]\OT1/cmr/m/n/10 explains how new data is added to ex-ist-ing ta-bles in the d
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[100] [101]
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 []  \OT1/cmtt/m/n/8 // Construct the extended context: FarDet data that starts
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[]\OT1/cmr/m/n/10 This is a string that can be re-trieved from \OT1/cmtt/m/n/10
 D\OT1/cmr/m/n/10 biResultSet
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[]\OT1/cmr/m/n/10 Query re-sults are held in a \OT1/cmtt/m/n/10 D\OT1/cmr/m/n/1
0 biResult and each of these also holds a \OT1/cmtt/m/n/10 D\OT1/cmr/m/n/10 biE
xceptionLog

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[]  \OT1/cmtt/m/n/8 else                  LOGINFO(mylog) << "Following errors f
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[]\OT1/cmtt/m/n/8 mysql://coop.phy.bnl.gov/dyb_test#\$DATABASEINTERFACE_ROOT/Db
iTest/scriptsDemoASCIICatalogue.db[] 

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[]\OT1/cmr/m/n/10 https://wiki.bnl.gov/dayabay/index.php?title=MySQL[]Installat
ion[] 
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\OT1/cmr/m/n/10 The Database-Main-te-nance pack-age pro-duces a sin-gle bi-nary
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[129]) [130] (./main.aux)

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 )
(see the transcript file for additional information)</usr/share/texmf-texlive/f
onts/type1/bluesky/cm/cmbx10.pfb></usr/share/texmf-texlive/fonts/type1/bluesky/
cm/cmbx12.pfb></usr/share/texmf-texlive/fonts/type1/bluesky/cm/cmbx8.pfb></usr/
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e/fonts/type1/bluesky/cm/cmmi10.pfb></usr/share/texmf-texlive/fonts/type1/blues
ky/cm/cmmi7.pfb></usr/share/texmf-texlive/fonts/type1/bluesky/cm/cmmi8.pfb></us
r/share/texmf-texlive/fonts/type1/bluesky/cm/cmr10.pfb></usr/share/texmf-texliv
e/fonts/type1/bluesky/cm/cmr12.pfb></usr/share/texmf-texlive/fonts/type1/bluesk
y/cm/cmr6.pfb></usr/share/texmf-texlive/fonts/type1/bluesky/cm/cmr7.pfb></usr/s
hare/texmf-texlive/fonts/type1/bluesky/cm/cmr8.pfb></usr/share/texmf-texlive/fo
nts/type1/bluesky/cm/cmsl10.pfb></usr/share/texmf-texlive/fonts/type1/bluesky/c
m/cmsy10.pfb></usr/share/texmf-texlive/fonts/type1/bluesky/cm/cmsy7.pfb></usr/s
hare/texmf-texlive/fonts/type1/bluesky/cm/cmsy8.pfb></usr/share/texmf-texlive/f
onts/type1/bluesky/cm/cmti10.pfb></usr/share/texmf-texlive/fonts/type1/bluesky/
cm/cmti8.pfb></usr/share/texmf-texlive/fonts/type1/bluesky/cm/cmtt10.pfb></usr/
share/texmf-texlive/fonts/type1/bluesky/cm/cmtt8.pfb>
Output written on main.pdf (136 pages, 870125 bytes).
Transcript written on main.log.

=== Citation `g4dyb' on page 1 undefined 

=== Reference `AES' on page 35 undefined 

=== Reference `f:history_pruning' on page 60 undefined 

=== Reference `Dbi:Install' on page 129 undefined 
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File "main.aux" has not changed, so it is valid

------------
Latexmk: Latex could not resolve all references.
-- Use the -f option to force complete processing.
/opt/bviren/dayabay/nightly
Done building manual
Building doxygen
/opt/bviren/dayabay/nightly/NuWa-trunk /opt/bviren/dayabay/nightly
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Configuring environment for standalone package.
CMT version v1r20p20080222.
System is Linux-x86_64
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Creating setup scripts.
Creating cleanup scripts.
/opt/bviren/dayabay/nightly/NuWa-trunk
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/opt/bviren/dayabay/nightly/NuWa-trunk/dybgaudi/Database/DatabaseRelease /opt/bviren/dayabay/nightly/NuWa-trunk/dybgaudi /opt/bviren/dayabay/nightly
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/opt/bviren/dayabay/nightly/NuWa-trunk/dybgaudi/Database/DatabaseInterface /opt/bviren/dayabay/nightly/NuWa-trunk/dybgaudi /opt/bviren/dayabay/nightly
/opt/bviren/dayabay/nightly/NuWa-trunk/dybgaudi /opt/bviren/dayabay/nightly
/opt/bviren/dayabay/nightly/NuWa-trunk/dybgaudi/Database/ParamFiles /opt/bviren/dayabay/nightly/NuWa-trunk/dybgaudi /opt/bviren/dayabay/nightly
/opt/bviren/dayabay/nightly/NuWa-trunk/dybgaudi /opt/bviren/dayabay/nightly
/opt/bviren/dayabay/nightly/NuWa-trunk/dybgaudi/DybAlg /opt/bviren/dayabay/nightly/NuWa-trunk/dybgaudi /opt/bviren/dayabay/nightly
/opt/bviren/dayabay/nightly/NuWa-trunk/dybgaudi /opt/bviren/dayabay/nightly
/opt/bviren/dayabay/nightly
Done building ChangeLogs
Updating existing installation directory installation/trunk/dybinst.
Updating existing installation directory installation/trunk/dybtest.
Logging to /opt/bviren/dayabay/nightly/dybinst-20090211-042240.log (or dybinst-recent.log)
Starting dybinst commands: cmt checkout external projects

Stage: "cmt"... 

Will reuse existing tar file: /opt/bviren/dayabay/nightly/external/CMTv1r20p20080222.tar.gz
Will reuse existing unpacked source area: /opt/bviren/dayabay/nightly/external/CMT/v1r20p20080222/
Will reuse existing installation: /opt/bviren/dayabay/nightly/external/CMT/v1r20p20080222

Stage: "checkout"... 

SVN checkout /opt/bviren/dayabay/nightly/NuWa-trunk found, will do update  

Stage: "external"... 

dybinst-external: installing packages: aida python boost clhep gccxml gsl mysql root xercesc hepmc heppdt openmotif openscientist geant4 nosebit

Installing external packages, this will take a while.  Go get coffee...
  Installing aida ... done
  Installing python ... done
  Installing boost ... done
  Installing clhep ... done
  Installing gccxml ... done
  Installing gsl ... done
  Installing mysql ... done
  Installing root ... done
  Installing xercesc ... done
  Installing hepmc ... done
  Installing heppdt ... done
  Installing openmotif ... done
  Installing openscientist ... done
  Installing geant4 ... done
  Installing nosebit ... done

Stage: "projects"... 

dybinst-projects: installing projects: relax gaudi lhcb dybgaudi from the possible: relax gaudi lhcb dybgaudi

Installing Daya Bay projects, this will take a while.  Go get tea...
  Installing relax ...
  Output dir : /opt/bviren/dayabay/nightly/NuWa-trunk/relax/Relax/Linux-x86_64
  default : skip rebuild when output_dir exists ... remove this output dir to force rebuild or rerun with -r / -c / -s  options to do this dumbly / cleverly / simply  ==> SKIP
  Installing gaudi ...
  Output dir : /opt/bviren/dayabay/nightly/NuWa-trunk/gaudi/GaudiRelease/Linux-x86_64
  default : skip rebuild when output_dir exists ... remove this output dir to force rebuild or rerun with -r / -c / -s  options to do this dumbly / cleverly / simply  ==> SKIP
  Installing lhcb ...
  Output dir : /opt/bviren/dayabay/nightly/NuWa-trunk/lhcb/Dyb/GiGaRelease/Linux-x86_64
  default : skip rebuild when output_dir exists ... remove this output dir to force rebuild or rerun with -r / -c / -s  options to do this dumbly / cleverly / simply  ==> SKIP
  Installing dybgaudi ...
  Output dir : /opt/bviren/dayabay/nightly/NuWa-trunk/dybgaudi/DybRelease/Linux-x86_64
  default : skip rebuild when output_dir exists ... remove this output dir to force rebuild or rerun with -r / -c / -s  options to do this dumbly / cleverly / simply  ==> SKIP