>COG0003 (Putative duplication confidence score 1.000)
CLUSTER 1
VNG0365G
VNG7123
MTH1511
MJ1142
MK1680
Ta0437
TVN0026
TVN1056
PAB1555
PAE1427
APE2164
APE2165
YDL100c
SPAC1142.06
aq_343
aq_682
FN1537
FN1538
Rv2184c
Rv3680
MT2239
MT3782
ML0890
ML2306
pli0037
BH1795
sll0086
slr1794
all2244
all2700
all4481
CLUSTER 2
Rv3679
MT3781
ML2305

>COG0004 (Putative duplication confidence score 0.500)
CLUSTER 1
AF0977
AF1746
AF1749
MA3917
MA3918
MA4207
MTH661
MTH663
MJ0058
MJ1343
MK0053
Ta0181a
SSO1054
YGR121c
YNL142w
YPR138c
SPAC2E1P3.02c
SPAC664.14
SPCPB1C11.01
aq_112
TM0402
DR0693
CAC0682
Cgl1545
Cgl2012
Rv2920c
MT2988
L0236
SA1848
lin1551
BS_nrgA
BH3834
sll0108
sll0537
sll1017
alr0990
alr0991
alr0992
amtB
ZamtB
ECs0505
YPO3142
STM0463
PA3039
PA5287
XF1844
NMB0615
NMA0820
RSc0343
AGc5001
SMc03807
BMEI0167
mll4246
CC1338
UU218
UU219
CLUSTER 2
Ta0181m
TVN1042

>COG0008 (Putative duplication confidence score 0.548)
CLUSTER 1
AF0260
VNG1153G
MA0587
MTH51
MJ1377
MK0757
Ta0942
TVN1086
PH1686
PAB0323
PAE2969
SSO0093
APE2317
YGL245w
YOR168w
SPAC17A5.15c
SPBC342.02
ECU02g1210
ECU10g1460
DR2611_1
glnS
ZglnS
ECs0710
YPO2630
STM0686
BU415
VC0997
PA1794
HI1354
PM0528
XF1338
NMB1560
NMA1748
RSc0791
CLUSTER 2
YOL033w
SPAPB1A10.11c
aq_1221
TM1351
TM1875
FN1340
DR0485
DR1687
CAC0990
Cgl0237
Cgl1263
Rv2992c
MT3070
ML1688
L0349
SPy0239
SP2069
SA0486
lin0269
BS_gltX
BH0109
sll0179
all3205
gltX
yadB
ZgltX
ZyadB
ECs0148
ECs3278
YPO2984
YPO3398
STM0185
STM2415
BU070
VC0595
VC2214
PA3134
PA4724
HI0274
PM1115
XF0822
NMB0003
NMB0349
NMA0250
NMA2138
RSc1179
RSc2210
HP0476
HP0643
jhp0428
jhp0588
Cj0845c
Cj1288c
AGl2475
AGl791
SMc00735
SMc03172
BMEI0381
BMEI0837
BMEI0968
mll0813
mlr0628
mlr3479
CC1905
CC2205
RP325
RP623
RC0448
RC0966
CT445
CPn0560
TP0673
BB0372
UU599
MYPU_6820
MPN678
MG462

>COG0014 (Putative duplication confidence score 1.000)
CLUSTER 1
MA4100
YOR323c
SPAC821.11
aq_1071
TM0293
DR1826
CAC3254
Cgl2303
Rv2427c
MT2500
ML1458
L0116
SPy1670
SP0932
lin1227
BS_proA
BH1504
sll0373
all2166
proA
ZproA
ECs0270
YPO3221
STM0322
VC2273
PA4007
HI1239
PM0936
XF1005
NMB1068
NMA1267
RSc2741
Cj0558c
AGc5042
SMc03777
BMEI0208
mll4009
CC3430
TP0350
CLUSTER 2
sll0461
alr3995

>COG0017 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0920
VNG0461G
MA1684
MTH226
MJ1555
MK0710
Ta0519
Ta0946
TVN0996
TVN1090
PH0241
PH1020
PAB0646
PAB2203
PAE0703
PAE2973
SSO0173
APE2192
YCR024c
YHR019c
YLL018c
SPBC1198.10c
SPBC1773.10c
SPCC1223.07c
ECU06g0790
ECU09g1680
FN0040
DR1055
DR1270
CAC2979
CAC3260
CAC3564
L0345
SPy0559
SPy0651
SP1542
SA1287
lin2010
BS_asnS
BH1696
sll0495
alr3658
asnS
ZasnS
ECs1013
YPO1412
STM1000
BU360
VC1297
HI1302
PM0643
XF2563
TP0609
BB0101
UU365
MYPU_7710
MPN252
MG113
CLUSTER 2
Ta0609m
TVN0659
PH0270
PAB2356
PAE2557

>COG0019 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0800
MA0726
MA2728
MTH1335
MJ1097
MK0483
Ta0788m
TVN0806
YKL184w
SPAC144.04c
aq_1208
aq_728
TM1517
TM1873
DR1758
CAC0608
Cgl1154
Cgl2084_2
Rv1293
MT1332
ML1128
L0121
SP0166
SP1978
SA0119
SA1232
lin2066
BS_lysA
BH1544
sll0504
all2997
lysA
ZlysA
ECs3695
YPO0796
STM2360
STM3013
BU438
VC0125
PA4519
PA5277
HI0727
PM1424
XF1116_2
NMB1976
NMA0468
RSc2979
RSp0424
RSp0679
HP0290
jhp0275
Cj0314
AGc3079
AGl2454
AGl3227
SMc00723
SMc02983
BMEI0084
BMEII1133
mll1584
mll2974
mlr3508
CC0360
CC2213
CLUSTER 2
DR1410
SP0920
BH3958
sll0873
VC1623
PM0371
HP0020
jhp0018
Cj1515c
AGl1366
SMb21631
BMEI1589

>COG0020 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0707
AF1219
VNG1779C
VNG1781C
MA1831
MA3723
MA4402
MTH232
MJ1372
MK0767
Ta0546
TVN0600
PH1590
PAB0394
PAE2942
SSO0163
APE1385
YBR002c
YMR101c
SPAC4D7.04c
ECU09g1870
aq_1248
TM1398
FN1326
DR2447
CAC1432
CAC1791
Cgl0966
Cgl2231
Rv1086
Rv2361c
MT1118
MT1118.2
MT2430
ML0634
ML2467
L183602
SPy1965
SP0261
SA1103
lin1352
BS_yluA
BH2423
sll0506
all2995
all3432
yaeS
ZyaeS
ECs0176
YPO1049
STM0221
BU236
VC2256
PA3652
HI0920
PM1989
XF1050
NMB0186
NMA0081
RSc1408
HP1221
jhp1142
Cj0824
AGc2550
SMc02097
BMEI0827
mll0640
CC1919
RP425
RC0590
CT450
CPn0566
TP0603
BB0120
CLUSTER 2
YDL193w_2
SPBC2A9.06c

>COG0021 (Putative duplication confidence score 0.500)
CLUSTER 1
YBR117c
YPR074c
SPBC2G5.05
ECU06g0120
aq_1765
DR2256
CAC0944
CAC1348
Cgl1536
Rv1449c
MT1496
ML0583
L0043
SPy1676
SP2030
SA1177
lin0360
lin1343
lin2809
BS_tkt
BH2352
sll1070
alr3344
tktA
tktB
ZtktA
ZtktB
ECs3327
ECs3810
YPO0926
STM2474
STM3076
BU094
VC0473
VCA0624
PA0548
HI1023
PM1242
PM1638
XF1936
NMB1457
NMA1669
RSc2750
HP1088
jhp0337
Cj1645
AGl2197
SMb20200
SMc02342
SMc03978
BMEI0311
mlr3749
CC3620
CT750
CPn0893
TP0560
UU586
MYPU_5110
MPN082
MG066
CLUSTER 2
TM1762
all4052

>COG0022 (Putative duplication confidence score 1.000)
CLUSTER 1
VNG2218G
Ta1437
TVN0101
PAE2646
SSO1370
SSO1526
APE1674
YBR221c
SPBC30D10.13c
ECU04g1160
DR0030
Rv2496c
MT2571
L0034
SPy1028
SP1163
SA0944
SA1347
lin1045
lin1410
BS_acoB
BS_bfmBAB
BS_pdhB
BH0214
BH0777
BH1823
BH2654
BH2762
sll1721
all0122
PA2248
PA3416
PA4151
RSc1798
AGc2638_2
AGl2718
SMb20020_2
SMc01031_2
SMc03202
BMEI0855_2
BMEII0747
mll3628
mll4472
mlr0384_2
CC1727_2
RP262
RC0348
CT246
CT340_2
CPn0033_2
CPn0305
MYPU_7630
MPN392
MG273
CLUSTER 2
BMEII0061_2
BMEII0216_2

>COG0031 (Putative duplication confidence score 1.000)
CLUSTER 1
VNG0606G
VNG1301G
MA2720
Ta0535
TVN0589
PAB0250
PAE1051
SSO0360
APE1223
APE1586
YGR012w
YGR155w_1
SPAC3A12.17c
SPBC36.04
aq_1556
TM0665
FN1055
FN1220
DR0789
CAC0931
CAC2235
Cgl2085
Cgl2508
Rv0848
Rv1077_1
Rv1336
Rv2334
MT1108_1
MT1377
MT2397
ML0839
ML2396_1
L0088
L0089
SPy1618
SP2210
SA0112
SA0418
SA0471
lin0255
BS_cysK
BS_yrhA
BS_ytkP
BH0088
BH3271
sll0712
slr1842
all1169
all2521
alr4416
alr4552
alr7586
cysK
cysM
ZcysK
ZcysM
ECs3286
ECs3292
YPO2992
YPO3011
YPO4018
STM2430
STM2440
BU066
VC0537
VC0968
PA0399_1
PA0932
PA2104
PA2709
HI1103
PM1693
XF0603_1
XF0831
NMB0763
NMA0974
RSc0917
RSp0276
RSp0417
HP0107
jhp0099
Cj0912c
AGc2247
AGc543
SMc00421
SMc01174
BMEI0101
BMEI0933
mll4505_1
mll4616
mll9227
mlr0353
mlr4651
mlr9541
CC1426
CC3625
CLUSTER 2
Rv3684
MT3786
YPO3147
STM0458
VC1061
PA1061
XF0128

>COG0044 (Putative duplication confidence score 0.500)
CLUSTER 1
AF2250
VNG2533G
MA0892
MTH1127
MJ1490
MK0530
Ta1319
TVN0269
PH1963
PAB1149
PAE0322
SSO0611
APE0261
YIR027c
aq_806
TM0335
FN0420
DR1106
DR1153
CAC0519
Cgl1573
Rv1381
MT1425
ML0533
L81189
SPy0907
SP1167
SA1044
lin1951
BS_pyrC
BS_yunH
BH2309
BH2538
sll1018
all2303
alr3339
alr5010
ybbX
ygeZ
Z0666
Z0667
Z4212
ECs0573
ECs0574
ECs3746
STM0523
PA0401
PA0441
PA5541
XF0988
RSc0679
HP0266
jhp0251
Cj1195c
AGc2404
AGc4328
SMa0552
SMc01361
SMc01821
BMEI1281
BMEI1644
BMEII0669
mll1629
mlr0687
mlr7790
CC0388
CC2444
CLUSTER 2
YJL130c_3
SPAC22G7.06c_3

>COG0045 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1540
AF2186
VNG1541G
MTH1036
MJ0210
MK0731
Ta1332m
TVN0274
PAE2312
SSO2483
APE1065
YGR244c
SPCC1620.08
aq_1306
aq_1620
DR1247
Cgl2512
Rv0951
MT0978
ML0155
SA1088
BS_sucC
BH2470
sll1023
all3914
sucC
ZsucC
ECs0753
YPO1115
STM0738
VC2085
PA1588
HI1196
PM0280
XF2547
NMB0959
NMA1153
RSc0554
Cj0533
AGc4780
SMc02480
BMEI0138
mll4306
mlr1324
CC0337
RP433
RC0599
CT821
CPn0973
CLUSTER 2
SPAC22A12.16

>COG0055 (Putative duplication confidence score 1.000)
CLUSTER 1
MA2441
YJR121w
SPAC222.12c
aq_2038
TM1610
FN0358
CAC2865
Cgl1185
Rv1310
MT1350
ML1145
L6563
SPy0760
SP1508
SA1905
lin0138
lin2673
BS_atpD
BH3754
slr1329
all5039
atpD
ZatpD
ECs4674
YPO4121
STM3865
BU008
VC2764
PA5554
HI0479
PM1494
XF1143
NMB1934
NMA0519
RSc3317
HP1132
jhp1060
Cj0107
AGc4754
SMc02501
BMEI0251
mll4060
CC3447
RP801
RC1235
UU129
MYPU_2360
MYPU_2660
MPN598
MG399
CLUSTER 2
UU054
MYPU_4500
MYPU_6990

>COG0056 (Putative duplication confidence score 1.000)
CLUSTER 1
MA2434
YBL099w
SPAC14C4.14
aq_679
TM1612
FN0360
CAC2867
Cgl1183
Rv1308
MT1348
ML1143
L8990
SPy0758
SP1510
SA1907
lin0136
lin2675
BS_atpA
BH3756
sll1326
all0005
atpA
ZatpA
ECs4676
YPO4123
STM3867
BU006
VC2766
PA5556
HI0481
PM1492
XF1145
NMB1936
NMA0517
RSc3319
HP1134
jhp1062
Cj0105
AGc4757
SMc02499
BMEI0249
mll4065
CC3449
RP803
RC1237
UU132_1
MYPU_2680
MPN600
MG401
CLUSTER 2
UU053
MYPU_2350
MYPU_4490
MYPU_7000

>COG0063 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0851_2
VNG1272C_2
MA1170_2
MTH1256_2
MJ1586_2
MK0808_2
Ta1451_2
TVN0127_2
PH1950_2
PAB1144_2
PAE2520_2
SSO2254_2
APE2362_2
YKL151c
SPCC61.03
ECU03g1390
aq_1365_2
TM0922_2
DR1529_2
CAC0490_2
Cgl0579_2
Rv3433c_2
MT3539_2
ML0373_2
L57608
SA0007
lin1663
BS_yxkO
sll1433_2
alr2957_2
yjeF_2
ZyjeF_2
ECs5142_2
YPO0368_2
STM4356_2
VCA0191_2
PA4949_2
XF0757_2
NMB1159
NMB1197
NMA1369
RSc1720_2
HP1363_2
jhp1281_2
Cj0188c_2
AGc3249_2
SMc00946_2
BMEI0977_2
mlr0346_2
CC1965_2
CLUSTER 2
MJ1337
MK0264

>COG0068 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1366
MA4161
MTH1287
MJ0713
MK0648
PH0897
PAB1560
aq_672
CAC0810
CAP0146
sll0322
alr0694
hypF
ZhypF
ECs3568
STM2842
HP0048
jhp0041
Cj0622
CLUSTER 2
MA0506

>COG0069 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0953_2
MA4218_2
MTH105_2
MTH1666
MTH194_2
MJ1351_2
MK0550
PAE3444
SSO0684
YDL171c_2
SPAPB1E7.07_2
aq_1565_2
TM0397_2
DR0183_2
CAC1673_2
Cgl0184_2
Rv3859c_2
MT3974_2
ML0061_2
L0119_2
SA0430_2
SA2248
lin1845_2
BS_gltA_2
BS_yerD
BH1728_2
sll1499_2
sll1502_2
alr4344_2
gltB_2
ZgltB_2
ECs4091_2
YPO3557_2
STM3330_2
VC2373_2
VC2376_2
PA3602
PA5036_2
XF2710_2
RSc2722
RSc2965_2
Cj0007_2
AGc235_2
AGl1265
AGl2101_2
SMc02612
SMc04028_2
BMEII0040_2
mll3030_2
mll7308
CC3607_2
CLUSTER 2
TM1058

>COG0074 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1539
AF2185
VNG1542G
MTH563
MJ1246
MK0732
Ta1331
TVN0273
PAE2313
SSO2482
APE1072
YOR142w
SPAC16E8.17c
SPBC1703.07_1
aq_1622
aq_1888
DR1248
Cgl2511
Rv0952
MT0979
ML0156
SA1089
BS_sucD
BH2469
sll1557
all3913
sucD
ZsucD
ECs0754
YPO1116
STM0739
VC2084
PA1589
HI1197
PM0281
XF2548
NMB0960
NMA1154
RSc0555
Cj0534
AGc4779
SMc02481
BMEI0139
mll4303
mlr1326
CC0338
RP432
RC0598
CT822
CPn0974
CLUSTER 2
fdrA
yahF
ZfdrA
ZyahF
ECs0369
ECs0580
STM0529

>COG0075 (Putative duplication confidence score 0.500)
CLUSTER 1
AF1417
VNG2418G
MA1816
MTH1601
MJ0959
MK0633
Ta1018
TVN0571
PH1308
PAB1801
PAE3321
PAE3447
SSO0906
SSO2597
APE2423
YFL030w
aq_1591
aq_1593
TM1400
DR0991
DR1350
DR2465
CAC0014
CAC0221
L86881
SA1544
BS_yurG
BH0762
sll1559
alr1004
VC0392
HP0736
jhp0673
AGl3195
SMa1495
SMa2139
mlr1322
mlr6806
CC2604
CLUSTER 2
STM0431
VCA0604
PA1310
SMb21537

>COG0076 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1323
AF2004
AF2295
VNG0327G
VNG6211G
MA0006
MA1949
MTH1116
MJ0050
MK1500
PH0937
PAB1578
APE0020
APE0412
APE2267
YDR294c
YMR250w
Rv3432c
MT3538
L123581
lin2463
lin2528
BH0566
BH2623
sll1641
all0395
gadA
gadB
ZgadA
ZgadB
ECs2098
ECs4397
YPO1193
YPO1529
VC1149
VCA0269
HI0946.1
SMa2402
SMb21414
BMEII0910
BMEII0911
mll0712
mlr4653
mlr6209
CLUSTER 2
MJ0610
MK0672

>COG0078 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1255
VNG6315G
MA3310
MTH1446
MJ0881
MK1070
Ta1330
TVN0272
PH0726
PAB1502
PAE1985
SSO0871
APE1992
YJL088w
SPAC4G9.10
aq_1711
TM1097
DR0080
CAC0316
Cgl1006
Cgl1365
Rv1656
MT1694
ML1410
L0108
L0109
L0113
SPy1544
SP2150
SA1012
SA2427
lin1629
BS_argF
BH2894
sll0902
alr4907
argF
argI
ZargI
ECs5231
YPO3446
STM4465
STM4469
BU368
VC2508
PA3537
PA5172
HI0596
PM0808
XF0998
NMB1573
NMA1762
RSc2554
Cj0994c
AGc755
SMa0695
SMc02137
BMEI1620
mlr5647
CC2242
BB0842
MPN306
CLUSTER 2
ygeW
Z4209
ECs3743

>COG0115 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0933
VNG0387G
VNG2122G
MA4349
MTH1430
MJ1008
MK1627
PAE3297
YHR208w
YJR148w
SPBC19G7.02
SPBC428.02c
aq_1606
aq_1893
TM0831
FN1729
DR0195
DR1626
CAC0792
CAC1479
CAC2226
Cgl0800
Cgl0971
Cgl2155
Cgl2526
Rv0812
Rv2210c
MT0833
MT2266
ML0866
L0086
L0179_2
SPy0911
SPy1990_2
SP0665_2
SP0856
SA0512
SA0670
SA1571
lin0977
lin1660
lin2893_2
BS_pabC
BS_ybgE
BS_yheM
BS_ywaA
BH0092
BH2156
BH2811
slr0032
slr0887
alr1260
ilvE
pabC
ZilvE
ZpabC
ECs1474
ECs4704
YPO1603
YPO3899
STM1198
STM3903
VC0029
VC2018
PA2964
PA5013
HI1169
HI1193
PM0566
PM1465
XF0075
XF1999
NMB0337
NMB1970_2
NMA0477_2
NMA2151
RSc0567
RSc2633_2
RSp0714
RSp1327
RSp1358
HP0293_2
HP1468
jhp0278_2
jhp1361
Cj0269c
Cj0862c_2
AGc1592
AGc4563
AGl2139
AGpA698
SMa0093
SMc00042
SMc01047
SMc02896
SMc04014
BMEII0014
BMEII0363
BMEII0612
BMEII0613
mll2664
mll9205
mlr0401
mlr1594
mlr3007
mlr7635
CC1744
CC2929
CC2952
RP428
RC0594
CLUSTER 2
YMR289w

>COG0119 (Putative duplication confidence score 0.846)
CLUSTER 1
AF0219
AF0957
MA1225
MA1226
MA3342
MA3793
MA4264
MA4615
MTH1481
MTH1630
MTH723
MJ0503
MJ1195
MJ1392
MK0275
MK0391
MK1209
TVN0909
PH1727
PAB0286
PAB0890
PAB0894
PAE1330
PAE1986
PAE1993
SSO0127
SSO0977
SSO2407
YDL131w
YDL182w
SPBC1105.02c
aq_2090
aq_356
TM0552
TM0553
DR1238
DR1482
CAC0260
CAC0261
CAC0970
CAC3174
Rv3469c
Rv3534c
MT3575
MT3638
SP1258
SA0837
SA1862
lin2094
BS_leuA
BS_yngG
BH1134
BH3058
sll1564
slr0186
alr1407
alr2968
alr3522
alr4840
leuA
mhpE
ZleuA
ZmhpE
ECs0078
ECs0407
YPO0533
STM0113
BUpL04
VC2490
PA1217
PA2011
HI0986
PM1962
XF1818
NMB1070
NMA1270
RSc0261
RSc2072
RSp0895
Cj1719c
AGl2702
SMb21125
SMc02546
BMEI1270
BMEI1926
mlr7805
CC0467
CC1541
CLUSTER 2
YNL104c
YOR108w
SPBC3E7.16c
CAC0273
Cgl0250
Rv3710
MT3813
ML2324
PA3792
RSp0322
AGc4114
SMc02717
BMEI0451
mlr2792

>COG0125 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0061
AF1308
VNG1929G
MA4433
MTH1100
MTH1765
MJ0293
MK0101
Ta0081
TVN0173
PH1695
PAB0319
PAE0964
SSO0780
SSO1191
SSO1192
APE2090
YJR057w
SPCC70.07c
ECU04g1220
aq_969
TM1099
FN1323
DR0111
Cgl0730
Rv3247c
MT3345
ML0772
L3846
SPy0399
SP0935
SA0440
lin2841
BS_tmk
BH0042
slr0379
all4708
tmk
Ztmk
ECs1476
YPO1605
STM1200
BU353
VC2016
PA2962
HI0456
PM1673
XF0580
NMB0670
NMA0869
RSc1784
HP1474
jhp1367
Cj0766c
AGc2760
SMc01189
BMEI0989
mll0424
CC1824
RP684
RC1047
CT188
CPn0273
TP0354
BB0793
UU020
MYPU_0520
MPN006
MG006
CLUSTER 2
MA2176

>COG0129 (Putative duplication confidence score 0.889)
CLUSTER 1
AF1014
MA1802
MA3373
MTH1449
MJ1276
MK1197
PAB0895
PAE0615
SSO3107
APE0013
YJR016c
SPAC17G8.06c
aq_837
TM0551
DR1132
CAC3170
CAC3604
Cgl1238
Rv0189c
MT0199
ML2608
L0077
SP2126
SA1858
lin2090
BS_ilvD
BH3062
slr0452
alr2771
ilvD
yagF
yjhG
ZilvD
ECs4705
YPO3897
STM3531
STM3904
BU600
VC0028
PA0353
HI0738
PM1625
XF0099
NMB1150
NMB1188
NMA1361
RSc2412
Cj0013
AGc3510
AGc4959
AGl1769
AGl3190
SMa0235
SMb20115
SMb20890
SMc00884
SMc04045
SMc04144
BMEI1848
BMEII0356
mll1102
mll7192
mlr5361
mlr5404
CC0819
CC1421
CC3044
CLUSTER 2
edd
Zedd
ECs2561
YPO2533
STM1885
VC0288
PA3194
XF1062
NMB1393
NMA1610
RSp1560
HP1100
jhp1026
AGc1060
SMc03068
BMEII0511
mll6512
CC2055

>COG0130 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0238
VNG1729G
MA1105
MTH32
MJ0148
MK0133
Ta1244
TVN0352
PH1644
PAB0356
PAE0865
SSO0393
APE0990
YLR175w
YNL292w
SPAC29A4.04c
SPBC11C11.10
ECU05g1020
aq_705
TM0856
FN0635
DR1323
CAC1805
Cgl1933
Rv2793c
MT2862.1
ML1546
L0328
SPy1251
SP1212
SA1114
lin1365
BS_truB
BH2410
slr0457
alr1543
truB
ZtruB
ECs4047
YPO3494
STM3284
BU375
VC0645
PA4742
HI1289
PM0756
XF0237
NMB1374
NMA1588
RSc1291
Cj1102
AGc127
SMc00321
BMEI1963
mlr5558
CC0036
RP501
RP502
RC0665
CT094
CPn0319
TP0889
BB0803
UU354
MYPU_5500
CLUSTER 2
SSO5761
APE0989

>COG0136 (Putative duplication confidence score 0.692)
CLUSTER 1
AF1506
VNG1435G
MA0430
MTH799
MJ0205
MK1389
Ta0363
PH1088
PAB1678
PAE2876
SSO0874
SSO2178
APE1143
YDR158w
SPCC1827.06c
aq_1866
TM1523
DR2008
CAC0022
CAC0568
Cgl0253
Rv3708c
MT3811
ML2322
L66199
SP1013
SA1226
lin1476
BS_asd
BH2401
slr0549
all3680
usg
Zusg
ECs3203
YPO2765
STM2369
VC2107
PA3116
HI1433
PM0486
XF1371
HP1189
jhp1114
Cj1023c
AGc4523
SMc04410
BMEII0407
mll4392
CC0253
CC3485
RP316
RC0430
CT363
CPn1048
CLUSTER 2
asd
Zasd
ECs4278
YPO3949
STM3539
BU448
VC2036
PA3117
HI0646
PM1632
NMB2079
NMA0351
RSc1987

>COG0144 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0853
AF2039
AF2324
VNG0499G
MJ0026
MK0043
MK0295
MK0370
MK0444
MK0673
MK0769
MK1539
MK1575
MK1630
PH0851
PH1078
PH1374
PH1537
PH1991
PAB0523
PAB0830
PAB1173
PAB1947
PAB2390
PAE0743
PAE3578
SSO0122
SSO0252
SSO0371
APE0514
APE1098
APE2465
YBL024w
YNL022c
YNL061w_2
SPAC17D4.04
SPAC23C4.17
SPAC2C4.06c
SPBP8B7.20c
ECU01g1080
ECU07g0320
ECU08g0400
TM1512
FN0313
DR2168
CAC1725
Cgl1561
Rv1407
MT1451
L141260
SPy1246_1
SPy1627
SP1402_1
SP1734
SA1060
lin1936
BS_yloM
BH2507
slr0679
alr0820
alr1008
sun
yebU_1
Zsun
ZyebU_1
ECs2545_1
ECs4154
YPO0240
STM1850_1
STM3408
VC0044
VC1502_1
PA0017
HI0624
PM1561
XF0928
NMB0112
NMB1351
NMA0162
NMA1563
RSc0075
RSc2453
Cj0636
AGc495
AGc5121
SMc00403
SMc04090
BMEI0235
BMEII0890
mlr4098
mlr6944
CC0102
CC1619
CT553
CPn0674
CLUSTER 2
MK0170

>COG0145 (Putative duplication confidence score 0.667)
CLUSTER 1
AF0906
MA0858
MA2889
MA3497
MA3498
MA4203
MA4395
MA4396
MA4562
MA4563
MK1093
SSO1668
lin0475
BH1881
BH1884
AGl3521
AGl3530
SMc02580
mll9131
mlr4662
CLUSTER 2
MA2300_1
MJ0964
MK1091
TVN0812
PAE2030
SSO1663
SSO2008
SSO2936
APE1328
APE2528
YKL215c_1
SPAC11D3.14c_1
SPAC11D3.15_1
aq_708
Rv0266c_1
slr0697_1
all4970
HP0695
jhp0633
AGpT62
SMb20023_1
SMb20406
BMEII0602_1
mlr1573_1
mlr4786
mlr5245
mlr7024
mlr9030
CC2369_1

>COG0146 (Putative duplication confidence score 0.500)
CLUSTER 1
MA2300_2
MJ0963
MK1048
TVN0811
PAE2028
SSO1662
SSO2010
SSO2934
APE1331
APE2530
YKL215c_2
SPAC11D3.14c_2
SPAC11D3.15_2
aq_1925
Rv0266c_2
slr0697_2
all4969
AGpT63
SMb20023_2
BMEII0602_2
mlr1573_2
mlr4788
mlr7025
mlr9031
CC2369_2
CLUSTER 2
HP0696
jhp0632
SMb20407
mlr5246

>COG0147 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1603
VNG0384G
VNG1647G
MA2987
MTH1655
MJ1075
MK0437
Ta0806m
TVN1024
PAB2045
PAE2460
SSO0893
APE2553
YER090w
YNR033w_2
SPBP8B7.29_2
SPCC1442.09
aq_1144
aq_582
TM0142
FN1730
DR0196_1
DR1791
CAC3163
Cgl0970_2
Cgl2971
Rv1005c
Rv1609
Rv2386c
MT1034
MT1644
MT2454
ML0236
ML1269
L0054
L0179_1
SPy1990_1
SP0665_1
SP1817
SA0669
SA1199
lin1674
lin2893_1
BS_pabB
BS_trpE
BH0090
BH1659
slr0738
slr1979
all0328
all0414_1
alr3233_1
alr3443_2
pabB
trpE
ZpabB
ZtrpEm
ECs1836
ECs2521
YPO1773
YPO1916
YPO1976
YPO2208
STM1723
STM1824
BUpT01
VC1174
VC1303
PA0609
PA1001
PA1758
HI1170
HI1387
PM0584
PM1464
XF0210
XF0674
XF1914
NMB1021
NMB1970_1
NMA0477_1
NMA1247
RSc2633_1
RSc2881
HP0293_1
HP1282
jhp0278_1
jhp1203
Cj0345
Cj0862c_1
AGc3082
AGc4162_1
SMc02725_1
SMc04013
BMEI0449_1
BMEII0013
mlr2774_1
mlr3005
CC1895
CC2953
CLUSTER 2
PA1903_1
PA4214_1

>COG0157 (Putative duplication confidence score 0.500)
CLUSTER 1
AF1839
VNG1884G
MA0322
MA0955
MTH1832
MJ0493
MK0446
PH0011
PAB2347
PAE3114_1
SSO0996
YFR047c
aq_869
TM1645
FN0010
CAC1023
Cgl1044
Rv1596
MT1632
ML1227
SPy0197
SP2016
lin2132
BS_nadC
BH1219
slr0936
all2091
nadC
ZnadC
ECs0113
YPO3424
STM0145
VC2422
PA4524
XF1925
NMB0396
NMA2088
RSc2448
HP1355
jhp1273
AGl1516
SMc02598
mll5833
mll6272
mll9102
CC2915
CLUSTER 2
ZmodD
ECs1694
HI1473
PM1111

>COG0160 (Putative duplication confidence score 0.750)
CLUSTER 1
VNG1524C
VNG6210G
MA2859
Ta0068
TVN0024
PH0138
PH0782
PH1423
PH1501
PAB0086
PAB0501
PAB1921
PAB2386
PAE1799
SSO2720
SSO2727
SSO3211
APE0457
SPAC1039.07c
DRA0029
CAC0368
CAC1427
Cgl0472
Cgl2387
Rv2589
MT2666
ML0485
SA2397
BS_ycnG
BH0919
BH0991
BH2624
all0396
alr2398
gabT
goaG
ZgabT
ZgoaG
ECs1879
ECs3523
YPO2844
STM2792
VCA0605
VCA0824
PA0266
PA2413
HI0949
RSc0029
RSp1424
AGpA358
AGpA435
SMa1761
SMa2400
SMb20973_3
SMb21186
SMc00675_2
SMc00677_3
SMc02413
BMEII0131
BMEII0348
mlr5521
mlr5943
mlr6024
mlr6991
mlr7169
CLUSTER 2
YGR019w
SPAC19D5.07
Rv3290c
MT3389

>COG0169 (Putative duplication confidence score 1.000)
CLUSTER 1
AF2327
VNG0382G
MA4594
MTH242
MJ1084
MK0117
Ta0284
TVN1317
PAB0300
PAE1913
SSO0306
APE0574
YDR127w_5
SPAC1834.02_5
aq_901
TM0346
FN0045
DR0077
DR1173
CAC0897_2
Cgl0419
Cgl1108
Cgl1591
Rv2552c
MT2629
ML0515
L0061
SPy0534
SPy1584
SP1376
SA1424
lin0493
lin1525
lin2338
BS_aroD
BH1324
slr1559
alr2057
aroE
ydiB
ZaroE
ZydiB
ECs2399
ECs4147
YPO0246
YPO1610
STM1359
STM3401
STM3859
BU493
VC0056
PA0025
PA0244
HI0607
HI0655
PM1271
PM1429
XF0624
NMB0358
NMA2129
RSc2777
RSp1398
HP1249
jhp1170
Cj0405
AGc3
AGl1139
AGl673
SMb20037
SMc02791
BMEI2058
BMEII0059
BMEII0871
mlr4492
CC0003
CT370_2
CPn1035_2
CLUSTER 2
SMc02044

>COG0174 (Putative duplication confidence score 0.600)
CLUSTER 1
AF0949
VNG2093G
MA3382
MA4216
MTH1570
MJ1346
MK0338
Ta1498
TVN1492
PH0359
PAB1292
PAE2556
PAE3442
SSO0366
SSO2440
SSO2554
APE2142
aq_111
TM0943
DR0451
Cgl2165
Cgl2180
Rv1878
Rv2220
Rv2222c
Rv2860c
MT1927
MT2278
MT2280
MT2928
ML0925
ML1631
L0118
SPy1877
SP0502
SA1150
lin1337
BS_glnA
BH2360
BH3867
slr1756
alr2328
glnA
ycjK
Z2491
ZglnA
ECs1874
ECs4792
YPO0024
STM4007
VC2746
PA0296
PA0298
PA1566
PA2040
PA3356
PA5119
PA5508
PA5522
HI0865
PM1175
XF1842
NMB0359
NMA2128
RSc1258
RSp0886
HP0512
jhp0461
Cj0699c
AGc1068
AGc3253
AGc326
AGc3883
AGl1262
SMc00762
SMc00948
SMc01594
SMc01973
SMc02352
SMc02613
BMEI0979
BMEII0523
BMEII0554
mll0343
mll3074
mll4187
mll5148
mll6521
mll7254
mll7307
mlr6210
CC1969
CC3130
CC3138
RP495
RC0671
CLUSTER 2
YPR035w
SPAC23H4.06
AGc4385
SMb20745
mlr0339

>COG0179 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0091
AF2225
VNG1037G
MA0585
MTH1507
MJ1656
MK1002
Ta0750
Ta1154m
TVN1232
PH0643
PAB1451
PAE2688
SSO2520
SSO2773
SSO2941
APE0053
YNL168c
SPBC21C3.09c
DR1609
DRA0226
Cgl1260
Cgl2964
Rv0939_1
Rv2993c
MT0966_1
MT3071
ML1689
SA0829
lin2367
BS_yisK
BH1071
BH2000
BH2005
slr1877
alr4803
ycgM
Z1942
Z3392
ECs1675
ECs3029
YPO1566
YPO2082
STM0331
STM1101
STM1812
STM2177
VCA1004
PA0318
PA2008
PA2471
PA4121
PA4122
PM1528
PM1529
NMB1338
NMA1552
RSc0383
RSc1086
RSc1824
RSp0690
Cj0021c
AGc22
AGc2795
AGl564
SMb21112
SMc04240
BMEI1708
BMEI1882
BMEII0137
mll4780
mlr1134
CC3567
CLUSTER 2
VC1346
RSc0301
SMc03207
mlr8306
CC2531

>COG0183 (Putative duplication confidence score 0.700)
CLUSTER 1
AF0018
AF0034
AF0133
AF0134
AF0201
AF0202
AF0283
AF0438
AF0967
AF0968
AF1291
AF2416
VNG0678G
VNG0931G
MA4042
MTH793
MJ1549
MK1378
Ta0030
Ta0351
Ta1456
TVN0069
TVN0131
TVN1260
PH0676
PAB0907
PAE1377
PAE2183
PAE2471
PAE2486
PAE2488
SSO0534
SSO2061
SSO2062
SSO2508
SSO2625
SSO2697
SSO2874
SSO3113
APE0929
APE1872
APE2382
APE2384
Rv0914c
Rv1627c
Rv1867
Rv2790c
Rv3522
Rv3523
Rv3540c
MT0939
MT1663
MT2860
MT3622.1
MT3623
MT3644
PA1016
AGl121
SMc00262
mlr7614
CC1432
CC1967
CC3111
CLUSTER 2
AF1028
AF1197
AF2243
VNG2063G
Ta0296
Ta0582
TVN0649
TVN1304
PAE1220
PAE3656
SSO2377
SSO2496
APE2108
YIL160c
YPL028w
SPBC215.09c
ECU06g0940
FN0495
DR1072
DR1428
DR1960
DR2480
DRA0053
CAC2873
CAP0078
Cgl2341
Rv0243
Rv0859
Rv1074c
Rv1323
Rv3546
Rv3556c
MT0257
MT0882
MT1104
MT1169
MT1365
MT3650
MT3660
ML1158
ML2162
ML2564
L11745
L25946
SPy0140
SPy0524
SPy1637
SA0223
SA0342
SA0534
lin1453
BS_mmgA
BS_yhfS
BS_yusK
BH0205
BH1997
BH2029
BH3487
BH3801
slr1993
atoB
fadA
paaJ
yfcY
yqeF
Z3605
ZfadA
ZyqeF
ECs3225
ECs3701
ECs4773
YPO2746
YPO3767
STM2389
STM3019
STM3982
VC1046
VC2759
VCA0690
PA0228
PA1736
PA2001
PA2553
PA2940
PA3013
PA3454
PA3589
PA3925
PA4785
HI0771
RSc0276
RSc0475
RSc1632
RSc1637
RSc1761
RSc2252
HP0690
jhp0638
AGc5022
AGc886
AGl2713
AGl640
SMa1450
SMb20589
SMc00966
SMc02228
SMc03879
BMEI0274
BMEII0496
BMEII0646
BMEII0817
mll4180
mlr3847
mlr5628
CC0077
CC0265
CC0510
CC0779
CC0894
CC1111
CC2407
CC3462
RP737
RC1134
RC1135
BB0109

>COG0194 (Putative duplication confidence score 1.000)
CLUSTER 1
YDR454c
SPBC1198.05
ECU01g1220
aq_184
TM1689
FN2033
DR2289
CAC1718
Cgl1568
Rv1389
MT1434
ML0541
L149828
SPy1632
SP1738
SA1052
lin1941
BS_yloD
BH2512
slr1123
alr0106
gmk
Zgmk
ECs4523
YPO0040
STM3740
BU434
VC2708
PA5336
HI1743
PM0922
XF1503
NMB1661
NMA1919
RSc2155
HP0321
jhp0304
Cj1177c
AGc2038
SMc00577
BMEI1469
mlr7857
CC1681
RP765
RC1194
CT030
CPn0120
UU213
MYPU_6870
MPN246
MG107
CLUSTER 2
CAC0298
CAC1217

>COG0195 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1891
VNG2661G
MA1260
MTH1054
MJ1045
MK0682
Ta0393m
TVN1179
PH1543
PHS019
PAB0426
PAB3393
PAE0669
SSO0220
APE1850
aq_259
TM1777
FN2022
DR1797
CAC1799
Cgl1941
Rv2841c
MT2907
ML1558
L173813
SPy1724
SP0553
SA1109
lin1359
BS_nusA
BH2416
slr0743
alr3829
nusA
ZnusA
ECs4050
YPO3497
STM3287
BU378
VC0642
PA4745
HI1283
PM0760
XF0234
NMB1642
NMA1896
RSc1288
HP1514
jhp1407
Cj0460
AGc136
SMc02912
BMEI1967
mlr5551
CC0044
RP553
RC0817
CT097
CPn0316
TP0892
BB0800
UU318
MYPU_2030
MPN154
MG141
CLUSTER 2
MTH1217
MK0714
PH0706
PAB1492
PAE0705
SSO0172

>COG0196 (Putative duplication confidence score 1.000)
CLUSTER 1
YDR236c
SPCC18.16c
aq_139
TM0857
FN0707
DR1008
CAC1806
Cgl1932
Rv2786c
MT2856
ML0852
L0167
SPy1250
SP1110
SA1115
lin0735
lin1366
BS_ribC
BH2409
slr1882
alr4848
ribF
ZribF
ECs0028
YPO0474
STM0045
BU150
VC0681
PA4561
HI0963
PM1661
XF2419
NMB1834
NMA0621
RSc2457
HP1087
jhp0338
Cj0589
AGc1228
SMc00909
BMEII1044
mlr8243
CC0703
CT093
CPn0320
TP0888
UU355
MYPU_5480
MPN158
MG145
CLUSTER 2
BS_ribR

>COG0208 (Putative duplication confidence score 0.667)
CLUSTER 1
VNG2383G
YGR180c
YJL026w
SPBC25D12.04
ECU06g0730
aq_1505_1
aq_1505_3
FN0103
DRB0109
CAC3276
Cgl2473
Rv1981c
Rv3048c
MT2033
MT3133
ML1731
L0295
SPy0425
SPy1378
SP1180
SA0687
lin2258
BS_nrdF
BS_yosP
BH0502
slr0591
nrdB
nrdF
ZnrdB
ZnrdF
ECs3118
ECs3539
YPO1213
YPO2648
STM2278
STM2808
BU178
VC1255
PA1155
HI1660
PM0719
XF1197
NMB1288
NMA1498
RSc2804
HP0364
jhp1016
Cj0231c
AGc107
BMEII0929
CC0260
RP512
RC0651
CT828
CPn0985
TP0053
MYPU_5390
MPN322
MG229
CLUSTER 2
SSO2498
Rv0233
MT0244

>COG0209 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1664
VNG1644G
VNG2384G
MA1665
MTH652
Ta1475
TVN0092
PH0363_1
PH0363_3
PAB1057_1
PAB1057_3
PAB1057_5
PAB1057_7
PAE3155
SSO0929
APE2062
YER070w
YIL066c
SPAC1F7.05
ECU10g0920
aq_094
TM0118
FN0102
DR2374_3
DRB0108
CAC1047
CAC3277
Cgl2478
Rv0570
Rv3051c
MT0596
MT3137
ML1734
L0294
SPy0427
SPy1375
SP1179
SA0686
lin2259
BS_nrdE
BS_yosN
BS_yosO_1
BS_yosO_3
BH0501
BH2810
slr1164
nrdA
nrdE
ZnrdA
ZnrdE
ECs3117
ECs3538
YPO1214
YPO2649
STM2277
STM2807
BU179
VC1256
PA1156
PA5496
PA5497
HI1659
PM0717
XF1196
NMB1291
NMA1501
RSc0195
RSc2805
HP0680
jhp0621
Cj0024
AGc106
AGc3183
SMc01237
BMEI0943
BMEII0930
mll0136
CC1889
CC3492
RP513
RC0647
CT827
CPn0984
TP1008
MYPU_5410
MPN324
MG231
CLUSTER 2
DR2374_1

>COG0219 (Putative duplication confidence score 1.000)
CLUSTER 1
FN0809
DR0231
CAC0700
Cgl0628
Rv3366
MT3475
ML0419
L161988
SPy0371
SP0486
SA1672
BS_cspR
BH1023
slr0992
alr3352
yibK
ZyibK
ECs4484
YPO0071
STM3695
VC2695
PA5127
HI0766
PM1513
XF1972
NMB0268
NMA2218
RSc0358
Cj0904c
AGc4082
SMc00184
BMEI0470
mlr2718
CC0471
CT540
CPn0660
UU268
MYPU_3030
MPN521
MG346
CLUSTER 2
VCA0627

>COG0222 (Putative duplication confidence score 1.000)
CLUSTER 1
YGL068w
SPCC4B3.09c
aq_1937
TM0457
FN2037
DR2043
CAC3145
Cgl0479
Rv0652
MT0681
ML1895
L0405
SPy1073
SP1354
SA0498
lin0283
BS_rplL
BH0122
sll1746
alr5303
rplL
ZrplL
ECs4909
YPO3748
STM4152
BU035
VC0327
PA4271
HI0641
PM1738
XF2634
NMB0131
NMA0143
RSc3035
HP1199
jhp1122
Cj0477
AGc3571
SMc01318
BMEI0748
mlr0275
CC0497
RP139
RC0180
CT316
CPn0080
TP0240
BB0390
UU011
MYPU_2890
MPN539
MG362
CLUSTER 2
CAC1661
Cgl0420
ssl0438

>COG0223 (Putative duplication confidence score 1.000)
CLUSTER 1
YBL013w
SPAC1805.09c
aq_1156_1
aq_2131
TM0528
FN1489
DR2435
CAC1723
Cgl1562
Rv1406
MT1450
ML0552
L0362
SPy1628
SP1735
SA1059
lin1937
BS_fmt
BH2508
slr0070
alr3460
fmt
yfbG_1
Z3513_1
Zfmt
ECs3143_1
ECs4153
YPO0241
YPO2420_1
STM2299_1
STM3407
BU497
VC0045
PA0018
PA3554_1
HI0623
PM1560
XF0927
NMB0111
NMA0163
RSc0072
RSc1320
HP1141
jhp1069
Cj0098
AGc642
SMb21235
SMc01100
BMEI1418
BMEII0265
mll4854
CC0279
RP209
RC0279
CT530
CPn0649
TP0756
BB0064
UU463
MYPU_0450
MPN543
MG365
CLUSTER 2
Rv3404c
MT3512

>COG0224 (Putative duplication confidence score 1.000)
CLUSTER 1
MA2433
YBR039w
SPBC1734.13
aq_2041
TM1611
FN0359
CAC2866
Cgl1184
Rv1309
MT1349
ML1144
L8105
SPy0759
SP1509
SA1906
lin0137
lin2674
BS_atpG
BH3755
sll1327
all0004
atpG
ZatpG
ECs4675
YPO4122
STM3866
BU007
VC2765
PA5555
HI0480
PM1493
XF1144
NMB1935
NMA0518
RSc3318
HP1133
jhp1061
Cj0106
AGc4756
SMc02500
BMEI0250
mll4063
CC3448
RP802
RC1236
UU130
MYPU_2670
MPN599
MG400
CLUSTER 2
aq_203

>COG0226 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1356
VNG0457G
VNG2486G
MA0887
MA2349
MA3093
MTH1727
MTH1728
MJ1015
MK1690
PAB2365
PAE1397
SSO0489
APE0045
aq_2016
TM1264
DRA0157
CAC1705
Cgl2521
Rv0928
Rv0932c
Rv0934
MT0955
MT0959
MT0961
ML2095
ML2192
L158188
L159386
SPy1245
SP1400
SA1221
lin2642
BS_pstS
BH2994
sll0540
sll0679
sll0680
slr1247
all0911
all3054_1
all4575
alr1094
alr4585
pstS
Z4788
Z4789
ZpstS
ECs4271
ECs4272
ECs4664
YPO3203
YPO4117
STM3528
STM3857
VC0721
VCA0070
VCA0807
PA0688
PA0689
PA2548_1
PA5369
HI1383m
PM0436
XF2141
RSc1529
RSc3310
Cj0613
AGc738
SMc02146
BMEI1989
mll3723
CC1515
BB0215
UU198
MPN611
MG412
CLUSTER 2
SP2084

>COG0235 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0480
VNG1201G
MA0263
MTH1406
MJ1418
MK1585
TVN1450
PH0191
PAB0117
PAE2158
APE1657
YJR024c
SPAC20H4.05c
SPAC9.06c
SPBC1289.14
SPBC359.06
aq_1658
aq_1979
TM0283
TM1072
FN1417
CAC1341
Rv0727c
MT0752
ML0837
SPy0179
SP2033
SP2166
lin2198
lin2979
BS_araD
BS_ykrY
BH1871
all1723
araD
fucA
rhaD
sgaE
sgbE
ygbL
ZaraD
ZfucA
ZrhaD
ZsgaE
ECs0065
ECs3660
ECs4829
ECs5174
YPO0328
YPO1236
YPO2230
YPO3326
STM0101
STM2916
STM2974
STM3677
STM4045
STM4388
VCA0244
PA0224
PA1683
PA3430
HI0611
HI1012
HI1025
PM1244
PM1364
XF2209
RSc0806
RSc1767
RSp0889
HP0112
jhp0104
SMa1976
SMb20490
SMb20666
SMc01621
BMEII0189
BMEII1095
mll4933
mlr6791
CC1201
RP493
RC0678
MYPU_5990
MPN498
CLUSTER 2
BH1952

>COG0243 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0159
AF0176
AF1203
AF1651
AF2384
VNG0829G
MTH1140
MTH1567
MJ0006
MJ1353m
MK0321
Ta0045m
TVN0002
PH1353
PH1359
PAB0532
PAB1389
PAB2442
PAE1265
PAE2002
PAE2662
PAE2840
PAE2859
SSO1029
SSO1580
SSO2795
SSO3191
APE2556
APE2610
aq_1039
aq_1234
aq_217
DR0397
Cgl0516
Rv0197
Rv1442
Rv2900c
MT0207
MT1487
MT2968
BS_nasC
BS_yoaE
BS_yyaE
BH0615
BH2530
BH2853
sll1454
all1061
alr0612
bisC
bisZ
dmsA
fdhF
fdnG
fdoG
napA
torA
ydeP
ynfE
ynfF
Z2207
Z2575
Z2576
Z3785
ZbisC
ZbisZ
ZdmsA
ZfdhF
ZfdnG
ZfdoG
ZnapA
ZtorA
ECs0979
ECs1152
ECs2078
ECs2106
ECs2293
ECs2294
ECs2582
ECs3095
ECs3384
ECs4436
ECs4820
ECs5061
YPO0344
YPO0794
YPO2965
YPO3038
YPO3325
STM0611
STM0964
STM1383
STM1498
STM1499
STM1570
STM2065
STM2259
STM2530
STM3644
STM3822
STM4037
STM4285
STM4305
VC1692
VC1950
VCA0678
PA1174
PA1779_1
PA2714
PA3534
PA5181
HI0006m
HI0344
HI0643
HI1047
PM0408
PM0409
PM0721
PM1594
PM1754
PM1793
RSc2373
RSc2859
RSp0070
RSp1048
RSp1219
HP0407
jhp0974
Cj0264c
Cj0780
Cj1511c
AGc2104
AGc2854
AGl1895
AGl213
AGl917
SMa0002
SMa1236
SMb20986
SMc00609
BMEI1243
BMEII0378
mll5614
mll9633
mlr2864
mlr7933
CC0617
CC1243
CLUSTER 2
PAE2839

>COG0246 (Putative duplication confidence score 0.562)
CLUSTER 1
YEL070w
YNR073c
TM0068
CAC0695
Cgl0110
L0241
BS_yjmI
BH0492
uxaB
uxuB
ydfI
yeiQ
ZuxaB
ZuxuB
ZydfI
ZyeiQ
ECs2128
ECs2151
ECs3064
ECs5282
YPO0580
YPO1280
YPO2325
STM1508
STM3083
STM3136
PA2342
RSc2129
AGc5101
AGl2604
AGl830
SMb20749
SMc01501
BMEII0478
mll4920
mlr1886
mlr4057
CC1487
CLUSTER 2
CAC0157
L33416
SP0397
SA1963
BS_mtlD
BH3851
mtlD
ZmtlD
ECs4476
YPO4067
STM3686
BU571
VCA1046
PM1062
MYPU_7500
MPN652

>COG0247 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0502
AF0506
AF0543
AF0544
AF0547
AF0661
AF0755
AF0809
AF0867
AF1773
AF1851
AF1998
VNG1972G
VNG2320G
VNG2422G_2
VNG6379C_2
MA0526
MA0687
MA0688
MA4410_2
MA4630
MTH139
MTH1850_2
MJ0092_2
MK0132_2
MK0498
Ta0198m
Ta0540
Ta0541
TVN0593
TVN0595
TVN1395
PAE1280
PAE1281
PAE1282
PAE1288
PAE1331
PAE1762
PAE2616
SSO2162_2
SSO2398
SSO2643
SSO3131
SSO3161
APE0101
APE0481
APE2352
aq_1639
aq_961
FN1540_2
DR1730
DR1907
DR2565
Cgl2262_2
Rv0338c
MT0352
ML2501
L174321
BS_ysfD
BS_yvfV
BS_ywjF
BH1832
BH2135
BH2729
BH3802
sll1831
all0623
glcF_2
glpC
ydiJ_2
ykgE
ZglpC
ZydiJ_2
ZykgE
ECs0344
ECs2394_2
ECs3128
YPO2407_2
YPO3824
STM1365_2
STM2286
VC1198_2
VCA0749
VCA0985_2
PA4772_2
PA5353
PA5399
HI0683
HI1163_2
PM0787_2
PM1440
PM1853
NMB0998_2
NMB1436
NMA1206_2
NMA1648
RSc0454_2
RSc1611
RSc2668
RSp0059
HP0139
HP0666
HP1222_2
jhp0127
jhp0611
jhp1143_2
Cj0075c
Cj0991c
Cj1585c_2
AGc1194
SMc00926
BMEII1061
mlr5745
mlr6920
CLUSTER 2
SSO0018

>COG0249 (Putative duplication confidence score 1.000)
CLUSTER 1
VNG0163G
VNG0172G
MA0523
TVN0674
TVN0675
YCR092c
YDL154w
YDR097c
YFL003c
YHR120w
YOL090w
SPAC13f5.01c
SPAC8F11.03
SPBC19G7.01c
SPCC285.16c
ECU03g0540
ECU10g0710
aq_308
TM1719
FN0693
DR1039
CAC1837
CAC3034
CAC3563
L0277
SPy2148
SA1137
SA1853
lin1440
BS_mutS
BH2369
sll1165
alr3638
mutS
ZmutS
ECs3589
YPO3354
STM2909
BU429
VC0535
PA3620
HI0707
PM1830
XF1716
NMB2160
NMA0247
RSc1151
AGc602
SMc01125
BMEI1801
mll5328
CC0012
RP298
RC0401
CT792
CPn0941
TP0328
BB0797
CLUSTER 2
SPBC24C6.12c

>COG0252 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0882
VNG1844G
MA1317
MTH706
MJ0020
MK1509
Ta0972
TVN1118
PH0066
PH1463
PAB1901
PAB2294
PAE1003
SSO0938
APE2200
YDR321w
YLR155c
YLR157c
YLR158c
YLR160c
SPAC186.03
SPAC977.12
FN0751
DR2353
CAC1714
Cgl2092
Rv1538c
MT1590
ML1198
L142722
SPy1782
SP1998
SA1310
lin2054
BS_ansA
BS_yccC
BH1624
ansA
ansB
ZansA
ZansB
ECs2474
ECs3833
YPO1386
YPO2161
STM1294
STM3106
STM3598
VC1995
PA1337
PA2253
HI0745
XF1093
NMB1688
NMA1947
RSc1306
HP0723
jhp0661
Cj0029
AGl2084
BMEI0105
BMEI0107
CLUSTER 2
YHR139c
YNL160w

>COG0259 (Putative duplication confidence score 1.000)
CLUSTER 1
YBR035c
SPAC1093.02
DR0495
Rv2607
MT2682
ML2131
sll1440
all1248
pdxH
ZpdxH
ECs2347
YPO2370
STM1448
VCA1079
PA1049
HI0863
XF1337
NMB1360
NMA1572
RSc0767
RSp0678
AGc1381
SMc00069
BMEI1517
mll7454
CC0918
CLUSTER 2
PA1905
PA4216

>COG0262 (Putative duplication confidence score 0.909)
CLUSTER 1
MA4540
DR0793
CAC1495
Cgl0700
L18647
lin2717
BS_ywjB
BS_yyaP
PA3469
AGc2241
AGl575
SMa1326
SMc02439
SMc04173
mll1872
mll8258
mll8388
mlr0926
mlr2503
mlr2644
CLUSTER 2
YOR236w
SPCC1223.08c_2
ECU01g0170
ECU01g1450
ECU08g0080
TM1641
FN0241
DR2632
CAC3004
Cgl0820
Rv2763c
MT2833
ML1518
L162872
SPy0883
SP1571
SA1259
lin1987
BS_dfrA
BH3450
folA
Z0055
ECs0051
YPO0486
STM0087
BU143
VC0440
PA0350
HI0899
PM1893
XF2331
NMB0308
NMA2179
RSc0946
AGc3708
SMc01442
BMEI0609
mll1457
CC2126
RC0034
CT612
CPn0759
UU114
MYPU_5370
MPN300_1
MPN321
MG213_1
MG228

>COG0266 (Putative duplication confidence score 1.000)
CLUSTER 1
DR0493
Cgl2021
Rv0944
Rv2924c
MT0970
MT2994
ML1658
L0271
SPy0497
SP0970
SA1512
lin1599
BS_mutM
BH3152
slr1689
alr4320
mutM
ZmutM
ECs4510
YPO0052
STM3726
VC0221
PA0357
HI0946
PM1145
XF0071
XF0170
NMB1295
NMA1505
RSc0399
AGc561
SMc01154
BMEI1946
mll5585
CC3707
RC1038
UU413
MYPU_3100
MPN380
MG262.1
CLUSTER 2
Cgl0824
Cgl2944
Rv2464c
Rv3297
MT2539
MT3396
nei
Znei
ECs0739
STM0728

>COG0272 (Putative duplication confidence score 1.000)
CLUSTER 1
aq_633
TM0100
FN1717
DR2069
CAC1195
CAC2673
Cgl1215
Rv3014c
MT3094
ML1705
L0304
SPy0751
SP1117
SA1720
lin1870
BS_yerG
BH0649
sll1209
all1717
lig
Zlig
ECs3283
YPO2989
STM2427
BU067
VC0971
PA1529
HI1100
PM1716
XF2556
NMB0666
NMA0865
RSc1398
HP0615
jhp0558
Cj0586
AGc3775
SMc01878
BMEI0589
mll1539
CC1522
RP720
RC1096
CT146
CPn0149
TP0634
BB0552
UU121
MYPU_3890
MYPU_4010
MPN357
MG254
CLUSTER 2
yicF
ZyicF
ECs4522
YPO0041
STM3739

>COG0276 (Putative duplication confidence score 1.000)
CLUSTER 1
Ta0311
TVN1293
YOR176w
SPCC320.09
aq_948
DR1131
Cgl1500
Rv1485
MT1532
ML1805
L0194
SP1009
SA1651
lin2314
BS_hemH
BH1203
slr0839_1
alr3751
hemH
ZhemH
ECs0528
YPO3117
STM0489
VC0987
PA4655
HI1160
PM0789
XF0566
NMB0718
NMA0927
RSc2643
HP0376
jhp1005
Cj0503c
AGl2129
SMc04019
BMEII0018
mlr3019
CC3762
RP884
RC1373
CT485
CPn0603
CLUSTER 2
alr4616

>COG0277 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0394
AF0507
AF0808
AF0868
VNG2422G_1
MA4410_1
MA4631
Ta0542
TVN0596
PAE1284
PAE1286
PAE2035
SSO0788
SSO1004
SSO1063
SSO1531
SSO2162_1
SSO3163
SSO3165
APE0308
APE0487
YDL174c
YDL178w
YEL071w
YML086c
SPAPB1A10.12c
SPBC713.03
aq_1769
FN1536
DR1026
DR1731
DR1732
CAC2542
Cgl0191
Cgl0556
Cgl0877
Cgl2262_1
Rv0063
Rv0161
Rv1257c
Rv1726
Rv1771
Rv1774
Rv2251
Rv2280
Rv3107c
Rv3351c
Rv3352c
Rv3353c
Rv3719
Rv3790
MT0068
MT1296
MT1767
MT1821
MT1824
MT2311
MT2338
MT3190
MT3459
MT3460
MT3461
MT3822
MT3898
ML0109
ML1103
ML2333
ML2631
BS_ygaK
BS_yitY
BS_ysfC
BS_yvdP
BH2134
BH2136
BH2730
sll0404
sll1189
slr0806
all0324
all0624
all4443
alr5269
dld
glcD
glcF_1
ydiJ_1
ygcT
ygcU
Z4084
Zdld
ZydiJ_1
ECs2394_1
ECs3020
ECs3629
YPO0308_1
YPO1177
YPO2407_1
STM1365_1
STM2167
VC1198_1
VCA0985_1
PA0317
PA1416
PA3026
PA4140
PA4772_1
PA5327
PA5354
PA5355
HI1163_1
HI1649
PM0787_1
XF0347
XF2205
NMB0997
NMB0998_1
NMB1524
NMA1205
NMA1206_1
NMA1724
RSc0050
RSc0172
RSc0454_1
RSc1556
RSc2664
RSc2666
RSc2667
HP0509
HP1222_1
jhp0459
jhp1143_1
Cj1213c
Cj1585c_1
AGc1189
AGc1191
AGc1314
AGc3718
AGc4965
SMa0244
SMb20097
SMb21129
SMb21415
SMc00779
SMc00832
SMc00833
SMc00985
SMc01020
SMc01455
SMc04384
BMEI0599
BMEI1527
BMEII0185
BMEII0438
BMEII1062
BMEII1063
BMEII1064
mll1265
mll1289
mll1488
mll2617
mll8576
mll8747
mlr6875
mlr6916
mlr6919
mlr7184
mlr7440
mlr8207
CC1219
CC3389
CLUSTER 2
YPO1451

>COG0280 (Putative duplication confidence score 0.833)
CLUSTER 1
VNG1624G_2
MA3607
FN1172
DR0073_2
CAC1742
Cgl2696
Rv0408_2
MT0421_2
L107797
SPy1128
SP1100
SA0545
lin2207
BS_pta
BH3823
slr2132_2
eutI
maeB_2
pta_2
Z3719_2
ZeutI
Zpta_2
ECs3181_2
ECs3320
ECs3325_2
YPO2567_2
YPO3034_2
STM2338_2
STM2466
STM2472_2
BU176_2
VC1097_2
PA0835_2
HI1203_2
HI1245_2
PM0002_2
PM0705_2
XF0977_2
NMB0631_2
NMA0841_2
RSc2123_2
RSc2767_2
jhp0841_2
Cj0688_2
AGc3042_2
AGl2933_2
SMb21532
SMc00169_2
SMc01126_2
BMEI0967_2
BMEI1803
mlr0809_2
mlr5329_2
CC2622_2
CC3549_2
RP373_2
RC0507_2
TP0094
BB0589
UU066
MYPU_2370
MPN428
MG299
CLUSTER 2
TM1130
TM1755
CAC3076
lin1406
BS_yqiS
RP109
RC0147

>COG0281 (Putative duplication confidence score 0.588)
CLUSTER 1
AF1727
VNG1624G_1
MA1735
Ta0456m
TVN0768
PH1275
PAB1792
PAE1688
SSO2869
APE0392
TM0542
Cgl2950
L3227
SPy1110
SA1524
BS_mleA
BS_ytsJ
BH0399
BH3168
slr0721
alr4596
maeB_1
Z3719_1
ECs3325_1
YPO3034_1
STM2472_1
VC2681
PA5046
HI1245_1
PM0002_1
XF0977_1
NMB0671
NMA0870
RSc2123_1
RSc2767_1
Cj1287c
AGc3042_1
AGl2933_1
SMc00169_1
SMc01126_1
BMEI0967_1
BMEI1802
mlr0809_1
mlr5329_1
CC2622_1
CC3549_1
RP373_1
RC0507_1
CLUSTER 2
MA1002
YKL029c
SPAC750.08c
SPCC794.12c
DR2583
DRA0276
CAC1589
CAC1596
Rv2332
MT2394
L121483
lin2029
BS_malS
BS_ywkA
sfcA
ZsfcA
ECs2083
YPO1511
STM1566
VC1188
PA3471

>COG0285 (Putative duplication confidence score 1.000)
CLUSTER 1
VNG0412G_1
Ta0637
TVN0757
YKL132c
YMR113w
SPAC227.09
aq_2045
TM0166
FN1014
DR0340
DR2575
CAC2398
Cgl2324
Rv2447c
MT2523
ML1471
L0177
SPy0814
SPy1096
SP0197
SP0290
SA1487
lin1586
BS_folC
BH3037
sll1612
alr1026
folC
ZfolC
ECs3199
YPO2769
STM2365
BU167
VC1001
PA3111
HI1261
PM0635
XF1946
NMB0693
NMA0896
RSc1979
HP1545
jhp1454
Cj1088c
AGc35
SMc02763
BMEI2021
mlr5076
CC3541
RP536
RC0779
TP0340
CLUSTER 2
YOR241w
SPBC1709.17

>COG0296 (Putative duplication confidence score 0.833)
CLUSTER 1
MA3032
SSO2093
DR0464
Cgl2075
Rv1562c
MT1613
all0168
all0875
STM1560
PA2164
RSp0237
AGpA409
SMb21447
CLUSTER 2
YEL011w
aq_722
FN0856
DR1848
Cgl1196
Rv1326c
MT1368
SP1121
BS_glgB
sll0158
all0713
glgB
ZglgB
ECs4277
YPO3942
STM3538
VCA0016
PA2153
HI1357
PM0541
RSp0239
AGl1558
SMc03922
mlr7587
CT866
CPn0475

>COG0303 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0161
AF0930
AF0931_1
VNG0086Gm_1
VNG0090G
MA4087
MA4350_1
MTH1003
MTH1369
MJ0666
MJ0886_1
MK1524
Ta1022_1
Ta1023
TVN0566
TVN0567_1
PH0582
PH1647
PAB1436
PAB2014
PAE3048
PAE3465_1
PAE3466
SSO0676
SSO2365
APE0177
APE0450
aq_030
DR0076
CAC2020_1
CAC2021
Cgl0213
Cgl0858
Cgl1170
Rv0438c
Rv0994
MT0454
MT1023
ML0183
SA2068
lin1034
BS_moeA
BH3021
slr0900
all5136
moeA
ZmoeA
ECs0905
YPO1495
STM0846
VC1527_2
VCA0617
PA3028
PA3914
HI1448
PM0694
RSc1037
RSc1330
HP0172
jhp0158
Cj0857c
Cj1519
AGc3105
SMc00238
BMEI0841
mlr0617
CC3209
CLUSTER 2
SMc00519_1
BMEI1902
mlr0093_1

>COG0305 (Putative duplication confidence score 1.000)
CLUSTER 1
aq_1472
TM1736
FN1827
DR0549
CAC3715
Cgl2923
Rv0058_1
Rv0058_3
MT0064_1
MT0064_3
ML2680
L0286
SPy2182
SP2203
SA0015
lin0047
BS_dnaC
BH4029
slr0833_1
slr0833_3
all0578_1
all0578_3
all7274
dnaB
ZdnaB
ECs1190
ECs5034
YPO0320
YPO1869
STM4246
BU546
VC0371
PA4931
HI1574
PM0412
XF0361
NMB0494
NMB0885
NMA1105
RSc1311
HP1362
jhp1280
Cj0562
AGc2006
AGl882
SMc00561
SMc01749
BMEI1485
mll7836
CC1665
RP542
RC0803
CT497
CPn0616
TP0058
BB0111
BBG32
UU550
MYPU_5150
MPN232
MG094
CLUSTER 2
CAC1192
BS_yorI

>COG0313 (Putative duplication confidence score 0.600)
CLUSTER 1
aq_1111
TM0709
FN1204
DR0636
CAC0307
Cgl0866
Rv1003
MT1032
ML0193
L6615
SPy0406
SP0938
SA0447
lin0210
BS_yabC
BH0049
sll0818
all4680
yraL
ZyraL
ECs4027
YPO3547
STM3263
BU091
VC0582
PA4422
HI1654
PM0645
XF0552
NMB2088
NMA0342
RSc3266
HP0552
jhp0499
Cj0154c
AGc523
SMc00416
BMEI1770
mlr4632
CC0144
RP747
RC1158
TP0975
BB0427
UU195
MYPU_0540
MPN071
MG056
CLUSTER 2
NMB1908
NMA0547
RSc1045
CT048
CPn0382

>COG0316 (Putative duplication confidence score 1.000)
CLUSTER 1
MA0903
YLL027w_2
YPR067w
SPBC3B9.17
SPCC645.03c
aq_1857
DR0051
DR0439
Cgl2149
Rv2204c
MT2260
ML0871
SA0801
BS_yutM
BH3410
slr1417
slr1565
all1431
all4341
alr2385
iscA
yadR
ydiC
ZyadR
ZydiC
ZyfhF
ECs0160
ECs2391
ECs3394
YPO2404
YPO2894
YPO3387
STM0204
STM1369
STM2541
BU122
BU211
VC0627
VC0750
PA0665
PA3812
HI0376
HI1723
PM0320
PM0458
XF0405
XF2394_2
XF2562
NMB0557
NMB1381
NMA0739
NMA1597
RSc0494
RSc1021
AGc3148
AGc3339
SMc00301
SMc02075
BMEI1034
BMEI1091
mll5942
mlr0024
mlr1094
CC1858
CC2009
RP063
RP484
RC0093
RC0728
CLUSTER 2
yhgI_1
ZyhgI_1
ECs4256_1
YPO0127_1
STM3511_1
BU544_1
VC2720_1
PA1847_1
HI0433_1
PM1557_1
XF2603_1

>COG0318 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0089
AF0196
AF0262
AF0567
AF0568
AF0672
AF0687
AF0840
AF1029
AF1261
AF1510
AF1772
AF1855
AF1932
AF2033
AF2368
VNG0162G
VNG1073G
VNG1339C
MA1028
MA1422
MA3717
MTH657
Ta0292
Ta0667
Ta1450
TVN0126
TVN0671
TVN1309
PAE1379
PAE2333
PAE2466
SSO0369
SSO1597
SSO2510
SSO2523
SSO2808
SSO2875
SSO3064
APE0396
APE1310
APE2284
YBR041w
YBR222c
YOR093c
SPAC22F3.04
SPAC56F8.02
SPCC1827.03c
DR0336
DR1692
DR2507
DRA0264
DRA0309
Cgl0284
Cgl0395
Cgl0445
Cgl1172
Cgl2812
Rv0035
Rv0099
Rv0119
Rv0166
Rv0214
Rv0270
Rv0404
Rv0542c
Rv0551c
Rv1013
Rv1058
Rv1185c
Rv1193
Rv1206
Rv1345
Rv1427c
Rv1521
Rv1529
Rv1683_2
Rv1750c
Rv1925
Rv2505c
Rv2930
Rv2941
Rv2948c
Rv2950c
Rv3089
Rv3506
Rv3513c
Rv3515c
Rv3561
Rv3801c
Rv3826
MT0040
MT0108
MT0127
MT0175
MT0224
MT0283
MT0417
MT0567
MT0577
MT1041
MT1088
MT1222
MT1230
MT1244
MT1387
MT1470
MT1572
MT1580
MT1723_2
MT1793
MT1976
MT2580
MT2999
MT3011
MT3021
MT3023
MT3174
MT3610
MT3615.2
MT3616
MT3666
MT3908
MT3934
ML0100
ML0132
ML0134
ML0138
ML0243
ML1051
ML1234
ML1346_2
ML1994
ML2257
ML2358
ML2546
ML2661
L0172
L24742
SPy0526
SA0226
SA0533
SA1615
lin1780
BS_lcfA
BS_menE
BS_pksJ
BS_ydaB
BS_yhfL
BS_yhfT
BS_yngI
BH1131
BH1932
BH2006
BH3103
BH3104
slr0492
alr0035
alr2678_1
alr4057
aas_2
caiC
fadD
menE
ydiD
Zaas_2
ZcaiC
ZfadD
ZmenE
ZydiD
ECs0040
ECs2408
ECs2514
ECs3148
ECs3693_2
YPO0793_2
YPO2074
YPO2523
STM0071
STM1350
STM1818
STM2305
STM3010_2
VC0249
VC1971
VC1985
PA1215
PA2424_1
PA2557
PA2893
PA3299
PA3300
PA3860
PA3924
PA4198
HI0194
HI0390.1
PM0357
PM0707
XF0287
XF2276
NMB1276
NMB1555
NMA1482
NMA1743
RSc0064
RSc0442
RSc0780
RSc1749
RSc1806_1
RSc2857
RSp0227
RSp0641_1
RSp0787
RSp1419_1
Cj0938c_3
AGc2614
AGc3078
AGc713
AGl123
AGl2326
SMa0150
SMb20650
SMc00261
SMc00965
SMc02162
BMEI1632
mll5415
mll6742
mll6983
mll7824_2
mlr1843
mlr4763
mlr5451_3
mlr6932
mlr6974
mlr7293
mlr7537
CC0192
CC0391
CC0922_1
CC0944
CC0966
CC1165
CC1321
CC1733
CC1801
CC1812
CC2299
CC2400
CC3188
CC3338
RP620_3
RC0962_3
CT776
CPn0922
CLUSTER 2
SMc00592

>COG0322 (Putative duplication confidence score 1.000)
CLUSTER 1
VNG2381G
MA3324
MTH441
aq_2126
TM0265
FN1090
DR1354
CAC0508
CAC3468
Cgl1554
Rv1420
Rv2191_2
MT1463
MT2247_2
ML0562
L0258
SPy1068
SP0618
SA0993
lin0839
lin1197
BS_uvrC
BS_yurQ
BH3097
sll0664
sll0865
alr2728
uvrC
ydjQ
Z2771
ZuvrC
ECs2447
ECs2651
YPO1866
STM1309
STM1946
VC1214
PA2585
HI0057
PM0857
XF2311
NMB1326
NMA1540
RSc1071
HP0821
jhp0760
Cj1246c
AGc2088
SMc00602
BMEI1251
mlr7912
CC2881
RP572
RC0864
CT791
CPn0940
TP0472
BB0457
UU381
MYPU_1560
MPN125
MG206
CLUSTER 2
sll0441

>COG0323 (Putative duplication confidence score 1.000)
CLUSTER 1
VNG0159G
MA0522
YMR167w
YNL082w
YPL164c
SPAC19G12.02c
SPBC1703.04
ECU05g0300
ECU11g1260
aq_1578
TM0022
FN0462
DR1696
CAC1836
L0276
SPy2121
SP0173
SA1138
lin1441
BS_mutL
BH2368
slr1199
alr3055
mutL
ZmutL
ECs5146
YPO0371
STM4359
BU570
VC0345
PA4946
HI0067
PM0904
XF0760
NMB1442
NMA1655
RSc2563
AGc1260
SMc00932
BMEII1026
mll8278
CC0695
RP880
RC1361
CT575
CPn0812
TP0303
BB0211
CLUSTER 2
YLR035c

>COG0324 (Putative duplication confidence score 1.000)
CLUSTER 1
YOR274w
SPAC343.15
aq_1067
TM0525
FN1917
DR1690
CAC1835
Cgl1899
Rv2727c
MT2799
ML0995
L15012
SPy0921
SP0671
SA1144
lin1332
BS_miaA
BH2366
sll0817
alr5266
miaA
ZmiaA
ECs5147
YPO0372
STM4360
BU569
VC0346
PA4945
HI0068
PM0905
XF0090
NMB0935
NMA1130
RSc2564
HP1415
jhp1310
Cj0166
AGc3695
SMc01435
BMEI0616
mll1448
CC2098
RP510
RC0656
CT766
CPn0910
TP0637
BB0821
CLUSTER 2
all0220
RSp1225
AGpT290
AGpT50

>COG0337 (Putative duplication confidence score 1.000)
CLUSTER 1
Ta0285
TVN1316
PAB0298
PAE1926
SSO0305
APE0579
YDR127w_1
SPAC1834.02_1
TM0348_2
FN0871_1
DR0777
CAC0894
Cgl1583
Rv2538c
MT2613
ML0518
L0060
SPy1577
SP1375
SA1298
lin2041
BS_aroB
BH1657
slr2130
alr1924
aroB
ZaroB
ECs4231
YPO0152
STM3486
BU538
VC2628
PA5038
HI0208
PM1223
XF1334
NMB1814
NMA0647
RSc2969
HP0283
jhp0268
Cj1008c
AGl2401
SMc00696
BMEI0043
mll3571
CC3009
CT369
CPn1036
CLUSTER 2
all0417

>COG0339 (Putative duplication confidence score 0.500)
CLUSTER 1
YCL057w
DR1659
Cgl2248
slr0659
alr0880
dcp
prlC
Zdcp
ZprlC
ECs2147
ECs4370
YPO3975
STM1512
STM3594
VC0188
PA0067
HI0214
PM0680
XF0127
XF1944
NMB0214
NMA0054
RSc1595
AGc4829
SMc04403
BMEII0416
mlr4139
CC3702
CLUSTER 2
YKL134c
SPAC1F3.10c

>COG0344 (Putative duplication confidence score 1.000)
CLUSTER 1
aq_676
TM1447
FN0537
DR0790_1
DR2021
DR2270
CAC2500
L5517
SPy0908
SP0851
SA1187
lin1323
BS_yneS
BH1639
sll1973
all0492
ygiH
ZygiH
ECs3942
YPO0647
STM3207
VC0523
PA0581
HI0266
PM1696
NMB1062
NMA1261
RSc2546
HP1509
jhp1402
Cj0357c
AGc2402
SMc01362
BMEII0668
mlr0688
CC2446
UU405
MYPU_2950
MPN350
MG247
CLUSTER 2
TM1283

>COG0348 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0143
MA4409
MJ0749
MJ0750
MK1183
Ta1233
TVN0362_2
SSO1581_2
SSO1816
SSO2764_2
CAC2762_1
slr1529_3
all3558_3
napH
yccM
ZnapH
ZyccM
ECs1147
ECs3093
STM2257
VC0036
PA1551
PA3391_2
PA4131
HI0346
PM1596
NMB1454
NMA1668
RSc1280
RSp1369_2
HP1508
jhp1401
Cj0369c
Cj0782
AGc2821
SMa1179_2
SMa1211
BMEI1567
BMEII0975_2
mll6626
mlr6415
CC1405
CLUSTER 2
BMEII0882

>COG0352 (Putative duplication confidence score 1.000)
CLUSTER 1
AF2074
MA2722
Ta1277
TVN0508
PH1156
PAB1645
YPL214c_1
SPAC23H4.10c_1
aq_1366
aq_558
FN1752
FN1758
DRA0174
CAC0495
CAC2920
Cgl1428_1
Cgl1990
Rv0414c
MT0427
ML0300
L0201
SP0718
SP0725
SA1894
lin0343
BS_tenI
BS_thiC
BH1431
sll0635
alr1343
thiE
ZthiE
ECs4916
YPO3740
STM4163
VC0062_2
PA3976
PA4400_2
HI0417
PM1260
XF0378
XF1120_2
NMB2069
NMA0363
RSc0108
RSp0984
HP0843
jhp0781
Cj1043c
Cj1081c
AGl3059
SMb20618
BMEI1736
mll5789
CC3264
CC3746
CLUSTER 2
AGl2166
SMc03996
BMEI0329
mlr3913

>COG0365 (Putative duplication confidence score 0.500)
CLUSTER 1
AF0197
AF0366
AF0677
AF0975
AF0976
AF1287
AF2389-C
AF2389-N
VNG0484G
VNG0997G
MA2912
MTH1603
MTH1604
MTH216
MTH217
MTH701
MTH702
Ta0229
Ta0421
Ta0769
Ta1508m
TVN0122
TVN1150
TVN1266
TVN1268
PAE2474
PAE2481
PAE2865
PAE2867
PAE3592
SSO1314
SSO1340
SSO1342
SSO1903
SSO2020
SSO2021
SSO2041
SSO2059
SSO2070
SSO2216
SSO2863
SSO3203
SSO9201
APE1346
APE2604m
YAL054c
YLR153c
SPCC417.14c
ECU05g0310
aq_2103
aq_2104
DR0460
DR2471
Rv3667
MT3768
SA1554
SA2402
lin2868
BS_acsA
BS_ytcI
BH1137
BH3201
BH3234
sll0542
all4256
all4257
acs
prpE
Z4856
Zacs
ZprpE
ECs0388
ECs4331
ECs5051
YPO0253
STM0371
STM4275
VC0298
VC1340
VCA0829
PA0887
PA0996
PA1997
PA2555
PA3568
PA4733
PM0692
XF1038
XF2255
RSc0432_1
RSc1518
RSc1952
RSp0037
RSp0367_1
RSp0651
RSp1265
HP1045
Cj1537c
AGc4980
AGl1446
SMa0567
SMc00741
SMc00774
SMc04093
SMc04095
BMEI0238
BMEI0307
BMEI1921
BMEI1922
BMEII0815
mll5286
mll6017
mlr0619
mlr2005
mlr4089
mlr6539
CC3581
CLUSTER 2
L54546
lin0373

>COG0367 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1439
VNG0867G
MA1966
MTH414
MJ1056
MJ1116
MK0103
Ta0315
TVN0439
PH1102
PAB0750
PAB1605
PAE0376
APE2041
YGR124w
YML096w
YPR145w
SPBC119.10
SPBC4F6.11c
ECU04g0840
CAC2243
CAC2249
Cgl2148
Rv2201
MT2257
ML0874
L00396
L0095
lin1772
BS_asnB
BS_asnH
BS_asnO
BH1508
asnB
ZasnB
ECs0704
YPO2623
STM0680
VC0991
PA0051
PA1214
PA2084
PA3459
XF0118
SMb20481
SMb20652
mll5256
mll6743
mlr5888
mlr6755
mlr9125
CLUSTER 2
MA0051

>COG0370 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0246
AF2394
MA3477
MA4337
MTH1361
MTH213
MJ0566
MK1248
PH1205
PAB0708
PAE0323
PAE0324
aq_1255
TM0051
DR1219
CAC0448
CAC1031
L190009
SA2337
lin2209
slr1392
alr2118
alr2119
feoB
ZfeoB
ECs4251
YPO0132
STM3506
VC2077
PA4358
XF0933
RSp0251
HP0687
jhp0627
Cj1398
CC0712
CLUSTER 2
SA2369

>COG0372 (Putative duplication confidence score 0.500)
CLUSTER 1
AF1340
VNG2102G
MA0249
MTH1726
MTH962
Ta0169
Ta0819
TVN0239
PAE1689
PAE3584
PAE3585
SSO2589
APE1713
SPBC1703.07_2
aq_150
TM0290
DR0757
Cgl0639
Cgl0806
Cgl6076
Rv0889c
Rv0896
Rv1131
MT0912
MT0920
MT1163
ML2130
L67186
SA1518
lin1602
BS_citA
BS_citZ
BS_mmgD
BH3160
BH3924
sll0401
alr0222
gltA
prpC
ZgltA
ZprpC
ECs0386
ECs0745
YPO1108
STM0369
STM0730
VC1337
VC2092
PA0795
PA1580
PM0276
XF1535
NMB0431
NMB0954
NMA1148
NMA2054
RSc1991
RSp0121
HP0026
jhp0022
Cj1682c
AGc2572
AGl71
AGpA439
AGpA441
SMc02087
BMEI0836
mll3842
mlr0629
mlr3843
msl6268
CC1906
CC3642
CC3643
RP844
RC1308
CLUSTER 2
YCR005c
YNR001c
YPR001w
SPAC6C3.04

>COG0380 (Putative duplication confidence score 1.000)
CLUSTER 1
MTH1757
Ta1210
TVN1254
PAE1272_1
YBR126c
YDR074w_1
YML100w_2
YMR261c_2
SPAC19G12.15c_1
SPAC22F8.05_1
SPAC328.03
SPAC3G6.09c_1
SPACUNK4.16c_1
ECU01g0800
Cgl2573
Rv3490
MT3594
ML2254
sll1566
otsA
ZotsA
ECs2604
STM1928
RSp0731
RSp1105
SMa0233
mll0691
mlr9595
msr9761
CLUSTER 2
ECU01g0870_1

>COG0389 (Putative duplication confidence score 1.000)
CLUSTER 1
VNG1014G
MA0974
MA4027
SSO2448
YDR419w
YOR346w_2
SPBC16A3.11_1
SPCC553.07c
FN1199
CAC0285
Cgl2094
Rv1537
Rv3056
MT1589
MT3142
L0305
L180104
SPy1846
SP0458
SA1196
SA1711
lin2082
lin2823
pli0067
BS_uvrX
BS_yobH
BS_yozK
BS_yqjH
BS_yqjW
BH1472
BH2741
slr0790
alr7254
dinP
umuC
ZdinP
ZumuC
ECs0258
ECs1679
YPO3231
PSLT054
STM0313
STM1997
VC2287
PA0923
PM0467
NMB1448
NMA1661
RSc1587
AGc2382
AGpA692
SMa0886
SMa2355
SMc01373
BMEII0656
mll9709
mlr0866
mlr1877
CC2466
UU437
MYPU_1880
MPN537
MG360
CLUSTER 2
Cgl0600
Rv3394c
MT3501
PA0670
RSp0799
AGl3171
AGpA144
AGpT174
SMa0890
SMc03789
BMEI1875
mlr4427
CC3212

>COG0396 (Putative duplication confidence score 0.600)
CLUSTER 1
AF2364
VNG0524G
MA4406
MTH1149
Ta0202
TVN1391
PH1384
PAB1855
PAE1808
SSO0925
APE1702
TM1368
DR2107
CAC3288
Cgl1525
Rv1463
MT1510
ML0595
L34806
SPy0285
SP0867
SA0774
lin2510
BS_yurY
BH3471
slr0075
alr2493
ynhD
ZynhD
ECs2389
YPO2402
STM1371
XF1475
AGc3346
SMc00531
BMEI1041
mlr0019
CC1862
CT685
CPn0691
TP0611
CLUSTER 2
MA0937
MJ0035
MK1233
PH0882
TM1417

>COG0402 (Putative duplication confidence score 0.667)
CLUSTER 1
AF0550
AF0997
AF1775
VNG1205C
VNG2249G
VNG6258C
MA1276
MA4095
MTH1505
MTH994
MJ0699
MJ1541
MK0366
MK1050
Ta1060m
TVN0515
PH1515
PAB0443
PAE0309
SSO0398
SSO0679
SSO2438
APE2436
YDL238c
SPAC1F8.04c
SPCC1672.03c
aq_587
TM0936
DR0824
DRA0180
CAC0282
SP1356
BH0185
BH0746
BH1692
alr3749
ssnA
ygfP
Z4218
ZygfP
ECs3752
ECs3756
YPO1974
PA0134
PA0142
PA1521
PA3170
PA5106
XF2472
RSc2099
RSc2119
RSp0551
HP0267
jhp0252
Cj0067
AGc4212
AGl1821
AGl363
AGl93GM
SMa0551
SMb20288
SMb20849
SMb21293
SMc00673
SMc02414
SMc02416
SMc02421
BMEI1571
BMEII0369
mll8318
mlr5142
CC0961
CC2616
CLUSTER 2
SSO2770
Cgl0075
slr1237
codA
yahJ
ZcodA
ZyahJ
ECs0373
ECs0390
YPO0162
STM3334
PA0437
HI0842
PM0565
PM1882
RSc1594
AGl364
SMa2371
SMb20128
SMc02420
mll1290
mll2061
mlr5363

>COG0409 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1370
MA1139
MTH1072
MJ0993
MK0226
PH0879
PAB1559
aq_1157
CAC0811
slr1498
alr0696
hypD
ZhypD
ECs3585
STM2857
HP0898
jhp0835
Cj0625
CLUSTER 2
jhp0834

>COG0413 (Putative duplication confidence score 1.000)
CLUSTER 1
VNG1478G
PH0951
PAB0570
PAE3410
SSO2400
APE0676
YBR176w
SPAC5H10.09c
aq_1973
TM1728
DR2615
CAC2914
Cgl0115
Rv2225
MT2284
ML1635
SA2392
lin2016
BS_panB
BH1687
slr0526
all1522
panB
ZpanB
ECs0138
YPO3401
STM0182
BU197
VC0592
PA1598
PA4729
XF0229
NMB0870
NMA1088
RSc2630
HP1058
jhp0367
Cj0298c
AGl2695
SMc01881
BMEI1592
mll0197
CC1651
CLUSTER 2
SMb20821
mll1731
mlr7631

>COG0417 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0497
AF0693m
VNG0521G
VNG6362G
MA0885
MTH1208
MTH208
MJ0885_1
MJ0885_3
MJ0885_5
MK1039
Ta0450
Ta0907
TVN0660
TVN0823
TVN1045
PH1947_1
PH1947_3
PAB1128
PAE1113
PAE2109
PAE2180
SSO0081
SSO0552
SSO1459
APE0099
APE2098
APE2229
YDL102w
YNL102w
YPL167c
SPAC3H5.06c
SPAC688.10
SPBC336.04
ECU05g0990
ECU09g0430
alr7572
polB
ZpolB
ECs0064
YPO0518
STM0097
VC1212
PA1886
CLUSTER 2
YNL262w
SPBC25H2.13c
ECU10g1210

>COG0426 (Putative duplication confidence score 0.571)
CLUSTER 1
AF0167
AF1520
MA1799
MA3381
MA3743
MTH1350
MTH157
MTH220
MJ0534
MJ0732
MJ0748
PH1085
PAB0596
TM0755
FN0512
FN1423
CAC1027
CAC2449
sll0217_1
sll0219_1
sll0550_1
sll1521_1
all0177_1
all0178_1
all3891_1
all3895_1
all4444_1
all4446_1
ygaK_1
Z4018_1
ECs3566_1
STM2840_1
CLUSTER 2
PH1971
PAB1188
aq_990
TM0013
CAC1498
PA4348
RSc2212

>COG0431 (Putative duplication confidence score 1.000)
CLUSTER 1
VNG1618H
YLR011w
SPCC4B3.06c
DR0624
DR0962
Cgl0985
Cgl2851
Rv3054c
MT3140
L171116
SPy1959
SP1471
SP1472_1
SP1546
SA0328
SA0518
lin2445
BS_yhdA
BH2050
BH3321
slr0945
alr4777
ycbP
yieF
ZycbP
ZyieF
ECs1020
ECs4650
YPO3623
STM3850
VC2111
PA1204
PA2280
PA2357
PA3446
PM1472
NMB1796
NMA0666
RSc1337
RSp1495
AGc2746
AGpA462
AGpA786
SMb20573
SMc00183
SMc01960
SMc02650
mll2599
mll4710
mll4752
mll5191
mlr0414
mlr4323
mlr5227
CC1506
CC1536
MPN517
MG342
CLUSTER 2
Cgl1606

>COG0444 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1770
VNG2344G
VNG2363Gm
VNG2526G_1
MA0299
MA0698
MA0879
MA1245
MA1911
MA2479
MA3046
MA3457
MA3464
MA3908
MA4252
MA4598
Ta0265
Ta1325
TVN1329
PH0505
PH0810
PH1412
PH1959
PAB0094
PAB0630
PAB1196
PAB1346
PAB1874
PAE1297
PAE3317
SSO1276
SSO1282
SSO2616
SSO2670
SSO3046
APE0301
APE1399
APE1578
APE2261
aq_2160
TM0028
TM0058
TM0074
TM0303
TM0498
TM0501
TM1064
TM1152
TM1194
TM1220
TM1749
FN0399
FN1110
FN1501
FN1524
FN1649
DR1568
CAC0179
CAC3182
CAC3629
CAC3636
CAC3642
Cgl2601_2
L148976
L93148
SPy0296
SPy2003
SP1888
SA0847
SA0851
SA1212
SA2252
lin2297
BS_appD
BS_dppD
BS_oppD
BH0028
BH0350
BH0570
BH1799
BH2077
BH3640
BH3646
ddpD
dppD
nikD
oppD
Z2226
ZdppD
ZnikD
ZoppD
ECs1746
ECs2088
ECs4346
ECs4421
YPO2185
YPO3452
YPO4000
STM1743
STM3627
VC0617
VC1094
PA4505
HI1121
HI1185
PM0239
PM1907
RSc1884
RSc2867
HP0301
jhp0286
Cj1581c
AGc2212
AGc4569
AGl1475
AGl2743
AGl2781
AGl3200
AGl360
AGl525
AGl868
AGpA366
AGpT258
SMa0108
SMa1365
SMa1371
SMa1647
SMa2081
SMb20478_2
SMc00789
SMc01528
SMc02423
SMc03125
BMEI0437
BMEII0200
BMEII0206
BMEII0222
BMEII0287
BMEII0490
BMEII0507
BMEII0863
mll0596
mll5437
mll9133
mll9147
mlr3400
mlr5419
mlr5516
mlr5893
mlr6085
mlr6674
mlr9270
CT201
CT690
CPn0201
CPn0682
BB0334
UU560_2
MYPU_2850
MYPU_4120
MPN217
MG079
CLUSTER 2
TVN0511

>COG0445 (Putative duplication confidence score 1.000)
CLUSTER 1
YGL236c
SPBC30B4.06c
aq_761
TM0263
FN0007
FN1723
DR0027
CAC3733
L97777
SPy2185
SP0120
SA2500
lin2942
BS_gidA
BH4061
sll0202
alr3561
gidA
ZgidA
ECs4683
YPO4130
STM3874
BU001
VC2775
PA5565
HI0582
PM1485
XF2106
NMB0193
NMA0074
RSc3328
HP0213
jhp0199
Cj1188c
AGc5134
SMc02798
BMEI0007
mll4482
CC3755
RP056
RC0084
CT498
CPn0617
TP0044
BB0178
UU039
MYPU_2530
MPN557
MG379
CLUSTER 2
DR1681

>COG0449 (Putative duplication confidence score 0.714)
CLUSTER 1
VNG0006G
MA3023
MTH171
MJ1420_3
MK0127
PH0243
PAB2201
PAE3025
SSO0382
SSO1268
APE1205
YKL104c
YMR084w
YMR085w
SPBC12C2.11
ECU07g1280
aq_301
TM0148
FN0452
DR0302
CAC0158
Cgl2219
Rv3436c
MT3542
ML0371
L33556
SPy1280
SP0266
SA1959
lin0734
BS_glmS
BH0268
sll0220
alr3464
glmS
ZglmS
ECs4671
YPO4118
STM3861
BU026
VC0487
PA5549
HI0429
PM1731
XF0141
NMB0031
NMA0276
RSc0178
HP1532
jhp1420
Cj1366c
AGc3284
SMa0878
SMc00231
BMEII0685
mll0833
mlr6386
mlr6774
CC0118
CT816
CPn0968
TP0861
CLUSTER 2
MJ1420_1
Ta0479
TVN0825
SSO0016_1
FN0628
lin0034
lin2107
STM0573
STM4539

>COG0450 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0270
MA4103
MTH159
MJ0736
Ta0152
Ta0473
Ta0954m
TVN0222
TVN0443
TVN0444
TVN1099
PH1217
PAB1673
PAE2085
SSO2121
APE2278
YBL064c
YDR453c
YML028w
SPCC576.03c
ECU03g1190
aq_486
aq_858
TM0807
FN1983
DR2242
Rv2428
MT2503
ML2042
L135351
SPy2079
SA0366
lin1645
BS_ahpC
BS_ykuU
BH2665
sll0755
slr1198
alr4404
alr4641
ahpC
ZahpC
ECs0644
YPO3194
STM0402
STM0608
BU182
VC0731
PA0139
PA0848
PA3450
PA3529
PM0795
XF1530
RSc0754
RSc1646
RSp0245
HP1563
jhp1471
Cj0334
AGc2729
SMb20964
BMEII0577
mll2432
mll3745
CC2918
RP327
RC0451
CT603
CPn0778
TP0509
CLUSTER 2
SPAC27D7.12c

>COG0452 (Putative duplication confidence score 0.875)
CLUSTER 1
AF1645
VNG0572G
MA1280
MTH1216
MJ0913
MK0713
Ta0889
TVN0973
PH1444
PAB1897
PAE1204
SSO0210
APE1959
SPAC15E1.04_1
aq_815
TM1687
FN0711
DR0579
CAC1720
Cgl1566
Rv1391
MT1436
ML0543
L166912
SPy1222
SP0165
SP1231
SA1054
lin1939
BS_yloI
BH2510
sll0250
all3111
dfp
Zdfp
ECs4514
YPO0048
STM3730
VC0215
PA5320
HI0953
PM1153
XF0149
NMB1658
NMA1916
RSc2461
HP0841
jhp0779
Cj0822
AGc552
SMc01161
BMEII0235
mlr3167
CC3712
BB0812
CLUSTER 2
YIL083c
YKL088w
YKR072c
YOR054c
SPCC4B3.18
Cgl1650
L167675
SPy1221
SP1230
BS_spoVFB
BH2402

>COG0464 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0477
AF1297
AF2098
VNG1462G
VNG1472G
VNG1654G
VNG1667G
VNG2062G
VNG6199G
MA1813
MA3527
MA4064
MA4575
MTH1639
MJ1156
MK0486_1
MK0486_3
Ta0840
Ta1175
TVN0382
TVN0947
PH0687
PH1278
PH1840
PAB1478
PAB1789
PAB2086
PAE0696
PAE3171
SSO0176
SSO0421
SSO0909
SSO2420
SSO2831
APE0960
APE1367
APE2474
YBR080c
YBR186w
YDL126c
YER047c
YGR028w
YGR270w
YKL197c
YLL034c
YLR397c
YNL329c
YPL074w
YPR173c
SPAC1565.08
SPAC17A5.01
SPAC1834.11c
SPAC2G11.06
SPAC31G5.19
SPAC328.04
SPBC16E9.10c
SPBC56F2.07c
SPBC947.01
SPBP22H7.05c
SPCC24B10.10c
SPCC553.03
ECU01g1230
ECU03g1410
ECU05g1140
ECU11g0840
ECU11g1030
DR0647
Cgl1461
Rv0282_2
Rv0435c
Rv1798_2
Rv2115c
Rv3868_2
Rv3884c_2
MT0295_2
MT0451
MT1847_2
MT2175
MT3981_2
MT3999_2
ML0055_2
ML1316
ML1536_2
ML2537_2
BS_spoVK
BH2289
BH2363
slr0374
slr0480
all1872
all2243
all3141
all4233
all4296
alr7046
alr7200
alr7528
alr8015
PA0657
RSc1961
Cj0377
AGpT158
SMb20196
SMc02733
mlr2758
mlr6544
CLUSTER 2
MA2066

>COG0468 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0993
AF2096
VNG1665G
VNG1711G_1
VNG2473G
MA0074
MA3545
MTH1383
MTH1693
MJ0254
MJ0869
MK1032
MK1442
Ta1036
Ta1104
TVN0457
TVN0559
PH0119
PH0263_1
PH0263_3
PAB0164
PAB2270
PAE0654
PAE3238
SSO0250
APE0119
YDR004w
YER095w
YER179w
SPAC20H4.07
SPAC644.14c
SPAC8E11.03c
ECU11g0820
aq_2150
TM1859
FN0547
DR2340
CAC1815
Cgl1910
Rv2737c_1
Rv2737c_3
MT2806_1
MT2806_3
ML0987_1
ML0987_3
L0260
SPy2116
SP1940
SA1128
lin1435
BS_recA
BH2383
sll0569
all3272
recA
ZrecA
ECs3556
YPMT1.50c
YPO3307
STM2829
VC0543
PA3617
HI0600
PM1817
XF0123
NMB1445
NMA1658
RSc0551
HP0153
jhp0141
Cj1673c
AGc3441
SMc00760
BMEI0787
mlr0030
CC1087
RP761
RC1182
CT650
CPn0762
TP0692
BB0131
UU084
MYPU_2520
MPN490
MG339
CLUSTER 2
SPAC3C7.03c

>COG0469 (Putative duplication confidence score 1.000)
CLUSTER 1
VNG0324G_1
MA3890
MJ0108
Ta0896
TVN1020
PH0570
PAB1441
PAE0819
SSO0981
APE0489
YAL038w
YOR347c
SPAC4H3.10c
ECU09g0640
TM0208
FN1765
DR2635
CAC0518
CAC1036
Cgl2036
Rv1617
MT1653
ML1277
L0003
SPy1282
SP0897
SA1520_1
lin1605_1
BS_pykA_1
BH3163_1
sll0587
sll1275_1
all2564
all4008_1
pykA
pykF
ZpykA
ZpykF
ECs2383
ECs2564
YPO2064
YPO2393
STM1378
STM1888
BU319
VC0485
VC2008
VCA0708
PA1498
PA4329
HI1573
PM0653
XF0824
NMB0089
NMA0177
RSc0572
RSp1448
Cj0392c
AGl2146
SMc04005
BMEI0292
mll3819
CC2051
CT332
CPn0097
BB0348
UU186
MYPU_2400
MPN303
MG216
CLUSTER 2
Cgl2847

>COG0474 (Putative duplication confidence score 1.000)
CLUSTER 1
MA1678
MA2501
MA2833
MA4082
MA4378
MTH1001
MTH1516
MTH481
MTH482
MJ1226
Ta1045
YAL026c
YDR038c
YDR039c
YDR040c
YDR093w
YER166w
YGL006w
YGL008c
YGL167c
YIL048w
YMR162c
YPL036w
SPAC1071.10c
SPAC24B11.12c
SPAC4F10.16c
SPAC6C3.06c
SPAC821.13c
SPAPB2B4.04c
SPBC31E1.02c
SPBC839.06
SPBC887.12
SPCC1020.01c
ECU06g0930
ECU09g1440
aq_724
FN1022
CAC1269
CAC2137
Cgl1510
Rv0107c
Rv0425c
Rv0908
Rv1997
MT0116
MT0440
MT0931
MT2053
ML2671
L117821
L168650
L2866
L76107
L85514
SPy0623
SP1551
SP1623
lin0814
lin0832
lin2836
BS_yloB
BH2515
sll0672
sll1076
sll1614
slr0822
all3245
all3375
alr1715_1
alr3723
mgtA
ZmgtA
ECs5219
YPO0451
YPO1661
STM3763
STM4456
PA1429
PA4825
SMa1155
BMEII0056
mlr6609
UU264
MYPU_1550
MPN209
MG071
CLUSTER 2
YEL031w
YOR291w
SPAC29A4.19c
SPACUNK4.07c
SPCC1672.11c
ECU02g0330
ECU07g1500

>COG0476 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0531
AF0553
VNG0084G
MA0255
MTH1571
Ta0844
TVN0943
PH0056
PAB2302
PAE1056
SSO0298
APE1594
YDR390c
YHR111w_1
YHR171w
YKL210w
YPL003w
YPR066w
YPR180w
SPAC24H6.12c
SPAC2G11.10c_1
SPAC323.06c
SPAC4C5.04
SPBC16H5.03c
SPBC211.09
SPBC6B1.05c
ECU02g1340
ECU03g0930
ECU03g1290_1
ECU09g0860
aq_1329
FN1755
DR2269
CAC2923
Cgl0209_1
Cgl1994_1
Rv1355c_1
Rv3116_1
Rv3206c_1
MT1398_1
MT3198_1
MT3301_1
ML0817_1
ML1751_1
SP0695
SA2071
lin1041
BS_moeB
BS_yjbU
BH1419
sll1536_1
all1432
all2906_1
alr7504
moeB
thiF
ZmoeB
ZthiF
ECs0904
ECs4915
YPO1494
YPO3741
STM0845
STM4162
VC0063
VCA0618
PA2103_1
PA4663
HI1449
PM0695
XF0466_2
NMB2062
NMA0373
RSc0351
HP0814
jhp0750
Cj1046c
AGc111
SMc02864
BMEI1940
mll5577
mll6192_2
mlr6140
CC3726
CLUSTER 2
Rv2338c
MT2401

>COG0479 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0682
VNG1308G
MTH1850_1
MJ0092_1
MK0132_1
Ta1002
TVN0746
PAE0717
SSO2357
APE0946
YLL041c
SPAC140.01
aq_553
aq_655
DR0951
Cgl0368
Rv0247c
Rv1553
Rv3319
MT0261
MT1604
MT3420
ML0696
SA0996
BS_sdhB
BH3091
sll0823
sll1625
all0945
frdB
sdhB
ZfrdB
ZsdhB
ECs0749
ECs5134
YPO0359
YPO1112
STM0735
STM4342
VC2088
VC2657
PA1584
HI0834
PM0200
XF1073
NMB0951
NMA1146
RSc1993
HP0191
jhp0177
Cj0410
Cj0438
AGc4790
SMc02466
BMEI0162
mll4260
CC3526
RP044
RC0069
CT591
CPn0790
CLUSTER 2
PAE2690

>COG0482 (Putative duplication confidence score 1.000)
CLUSTER 1
YDL033c
SPAC23H4.04
aq_1224
aq_899
TM0520
FN0765
FN1920
DR1759
CAC2233
Cgl1211
Rv3024c
MT3108
ML1707
L52034
SPy2188
SP0118
SA1449
lin1547
BS_yrrA
BH1261
sll0844
all1359
trmU
ZycfB
ECs1605
YPO1638
STM1234
BU261
VC1128
PA2626
HI0174
PM1336
XF1440
NMB1556
NMA1744
RSc2723
HP1335
jhp1254
Cj0053c
AGl2270
SMc00659
BMEI0428
mlr2824
CC0897
RP306
RC0410
CT287
CPn0438
BB0682
UU402
MYPU_5580
MPN422
MG295
CLUSTER 2
aq_898
FN0563
HP0013
jhp0011
Cj1633

>COG0492 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1554
VNG1259G
VNG2301G
VNG6074G
VNG6075G
VNG6451G
VNG6452G
VNG7055
VNG7154
MA1368
MTH708
MJ1536
MK1561
Ta0984
TVN0470
TVN1129
PH1426
PAB0500
PAE1725
PAE2744
SSO2222
SSO2416
SSO2765
APE1061
YDR353w
YHR106w
ECU01g0680
ECU02g0940
aq_407
aq_500
TM0134
TM0869
FN1163
FN1984_1
DR0412
DR1982
DR2623
CAC0869
CAC1548
CAC3082
Cgl0673
Cgl3030
Rv3913
MT4032
ML2703_1
L00196
L0196
SPy0850
SP1458
SP1563
SA0719
SA1311
SA2162
lin2075
lin2489
lin2621
BS_trxB
BS_ycgT
BS_ypdA
BS_yumC
BH0657
BH1428
BH1429
BH1493
BH1623
BH3408
BH3571
slr0600
all0737_1
all4510
alr2204
trxB
ZtrxB
ECs0973
YPO1374
STM0958
BU314
VC1182
PA0849
PA2616
PA4170
HI1158
PM0573
XF1448
NMB1324
NMA1538
RSc1139
RSc2342
HP0825
HP1164
jhp0764
jhp1091
Cj0146c
Cj0559
Cj1725
AGc2995
AGc3970
AGc405
SMa1890_2
SMa1891
SMc01159
SMc01224
BMEI0512
BMEI0958
mll0792
mll2552
mlr4645
CC2871
RP445
RP514
RC0618
RC0637
CT099
CPn0314
TP0814
BB0515
UU074
MYPU_7130
MPN240
MG102
CLUSTER 2
SA2370

>COG0493 (Putative duplication confidence score 0.875)
CLUSTER 1
MA3787
Ta0414
TVN1157
PH0876
PH1873
PAB1214
PAB1738
PAE3227
APE0935
YDL171c_4
SPAPB1E7.07_4
aq_2064
TM1217_2
TM1640
DR0182
CAC0764
CAC1674
Cgl0185
Rv3858c
MT3973
ML0062
L114827
SA0431
lin1844
BS_gltB
BH1729
sll1027
aegA_2
gltD
yeiT
ygfK_2
ygfT_2
Z3401
Z4217_2
ZgltD
ZyffG_2
ZygfT_2
ECs3038
ECs3330_2
ECs3751_2
ECs3759_2
ECs4092
YPO0342_2
YPO3558
STM2186
STM2479_2
STM3331
VC2374
VC2377
PA0440
PA5035
XF2709
RSc2964
Cj0009
AGl2104
SMc01814
SMc04026
BMEI1638
BMEII0039
mll1646
mll3029
CC3606
RP006_1
RC0005_2
TP0735
CLUSTER 2
YDR376w
SPBC3B8.01c
ECU11g1310
DR0496
Cgl2697
Cgl2757
Rv0886_2
Rv3106
MT0909_2
MT3189
ML0666
ML2134_2

>COG0503 (Putative duplication confidence score 0.923)
CLUSTER 1
VNG0559G
VNG2117C
MA0717
MTH1320
MJ1655
MK0610
PH1691
PAB2035
PAE2071
SSO0233
APE0060
APE1080
YDR441c
YML022w
SPAC23A1.03
TM1384
FN1483
FN2073
DR0568
DR0878
DR1617
CAC0873
CAC2275
CAC3224
Cgl1615
Rv2584c
MT2661
L134453
L159396
L22735
SPy0268
SPy0927
SPy1136
SP1577
SP1847
SP1979
SA0373
SA0454
SA1461
lin0231
lin1559
lin1998
BS_apt
BS_purR
BS_xpt
BH0062
BH1241
BH1514
sll1430
alr4582
apt
Zapt
ECs0522
YPO3123
YPO4019
STM0483
VC1053
PA1543
PA5298
HI1230
PM0363
NMB1662
NMA1920
RSc0417
HP0572
jhp0519
Cj0927
AGc4069
AGl877
SMb21280
SMc02698
BMEI0476
mll2701
TP1039
BB0777
UU488
MYPU_3220
MPN395
MG276
CLUSTER 2
gpt
Zgpt
ECs0265
YPO3225
STM0317
BU251
VC2277
HI0674
HI0692
PM1369
AGc3180
SMc00945
BMEI0940
mll0141

>COG0504 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0252
VNG1830G
MA3279
MTH419
MJ1174
MK0205
Ta0044m
TVN0033
PH1792
PAB0231
PAE3518
SSO0201
APE1604
YBL039c
YJR103w
SPAC10F6.03c
ECU11g0480
ECU11g0880
aq_1334
TM0803
DR1573
CAC2892
Cgl1383
Rv1699
MT1738
ML1363
L88252
SPy1894
SP0494
SA1929
lin2704
BS_ctrA
BH3792
sll1443
alr5000
pyrG
ZpyrG
ECs3640
YPO3377
STM2953
BU416
VC2448
PA3637
HI1077
PM1872
XF1288
NMB1554
NMA1742
RSc1126
HP0349
jhp0323
Cj0027
AGc2984
SMc01025
BMEI0849
mll0606
CC1720
RP378
RC0523
CT183
CPn0236
TP0305
BB0575
UU284
MYPU_6660
CLUSTER 2
PA2268_1
AGpA703

>COG0512 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1602
VNG0386Gm
VNG1646G
MA2986
MTH1656
MJ0238
MK0436
Ta0807
TVN1023
PAB2046
PAE2459
SSO0894
APE2555
YKL211c_1
YNR033w_1
SPBC1539.09c_1
SPBP8B7.29_1
aq_549
TM0141_1
FN1731
DR0196_2
DR1766
CAC3162
Cgl0970_1
Cgl2972
Rv0013
MT0016
ML0015
L0053
L0178
SPy1991
SP1816
SA0668
SA1200
lin1673
lin2892
BS_pabA
BH0091
slr0055
all0269
all0414_2
alr3233_2
alr3443_1
pabA
trpD_1
ZpabA
ZtrpD_1
ECs1835_1
ECs4211
YPO0169
YPO2207
STM1724_1
STM3469
BUpT02
BUpT04
VC1173
VC2619
PA0649
PA1002
HI1171
HI1388
PM0583
PM1463
XF0211
XF1915
NMB0966
NMA1163
RSc2882
HP1281
jhp1202
Cj0346_1
Cj0861c
AGc4162_2
SMc02725_2
BMEI0449_2
mlr2774_2
CC1897
CLUSTER 2
PA1903_2
PA4214_2

>COG0513 (Putative duplication confidence score 1.000)
CLUSTER 1
AF2254
MA3956
MTH203
MJ0669
Ta0297
TVN1303
SSO1889
SSO2036
YBR142w
YBR237w
YDL031w
YDL084w
YDL160c
YDR021w
YDR194c
YDR243c
YFL002c
YGL064c
YGL078c
YGL171w
YHR065c
YHR169w
YJL033w
YJL138c
YKR024c
YKR059w
YLL008w
YLR276c
YMR290c
YNL112w
YNR038w
YOR046c
YOR204w
YPL029w
YPL119c
SPAC1006.07
SPAC1093.05
SPAC17G6.14c
SPAC1F5.10
SPAC1F7.02c
SPAC22F3.08c
SPAC30D11.03
SPAC31A2.07c
SPAC637.11
SPAC823.08c
SPBC12C2.06
SPBC17D1.06
SPBC21H7.04
SPBC24C6.02
SPBC4F6.07c
SPBC543.06c
SPBC691.04
SPBC776.09
SPBP8B7.16c
SPCC10H11.01
SPCC1494.06c
SPCC1795.11
SPCC285.03
SPCC63.11
ECU02g0670
ECU02g1520
ECU05g1270
ECU06g1250
ECU07g1060
ECU08g1080
ECU09g1200
ECU09g1640
ECU10g0440
ECU10g0690
ECU10g1680
aq_613
FN1975
DR0335
DR1624
CAC0778
CAC0784
CAC2748
CAC3010
Cgl0747
Cgl1130
Cgl1415
Rv1253
Rv3211
MT1292
MT3307
ML0811
L0339
L0340
SPy1369
SPy1415
SPy1659
SP0761
SP1483
SP1586
SA1387
SA1885
lin0859
lin1214
lin1488
lin1833
BS_deaD
BS_ydbR
BS_yfmL
BS_yqfR
BH1385
BH2384
BH3348
slr0083
alr1223
alr4718
dbpA
deaD
rhlB
rhlE
srmB
ZdbpA
ZdeaD
ZrhlB
ZrhlE
ZsrmB
ECs0875
ECs1927
ECs3442
ECs4043
ECs4713
YPO1776
YPO2708
YPO3488
YPO3869
STM0820
STM1655
STM2643
STM3280
STM3914
BU372
VC0305
VC0660
VC1407
VC2564
VCA0061
VCA0204
VCA0768
VCA0804
VCA0990
PA0428
PA0455
PA2840
PA3466
PA3861
PA3950
HI0231
HI0422
HI0892
PM1112
PM1840
PM1921
XF0192
XF0252
XF2696
NMB1368
NMB1422
NMA1580
NMA1634
RSc0539
RSc0622
RSc0952
RSc2211
HP0247
jhp0232
AGc3366
AGc4238
AGc4993
AGl1362
SMb20880
SMc00522
SMc01090
SMc03877
BMEI0275
BMEI0934
BMEI1035
BMEI1824
mll0224
mlr0349
mlr3852
mlr4393
CC0657
CC0835
CC1847
RP669
RC1020
TP0770
UU582
MYPU_0690
MPN443
MPN623
MG308
MG425
CLUSTER 2
YBL111c
YBL112c
YDR545w
YEL077c
YER190w
YFL066c
YGR296w
YHL050c
YHR218w
YHR219w
YIL177c
YJL225c
YLL066c
YLL067c
YLR466w
YLR467w
YML133c
YNL339c
YOR396w
YPL283c
YPR204w

>COG0514 (Putative duplication confidence score 1.000)
CLUSTER 1
MA4507
APE1353_2
YMR190c
SPAC212.11
SPAC2G11.12
ECU07g1130
FN0578
DR1289
CAC2687
Cgl0869
L0268
SA0676
SA1313
lin2056
lin2900
BS_recQ
BS_yocI
BH1607
slr1536
alr0205
alr3451
alr4842
recQ
Z4802
Z4803
ZrecQ
ECs4283
ECs4284
ECs4752
YPO3833
STM3958
VC0196
PA3344
HI0728
PM1427
XF1381
NMB0274
NMA2213
RSc3025
AGc92
SMc01566
mll4050
CC3465
TP0103
CLUSTER 2
Z4801
ECs4282

>COG0516 (Putative duplication confidence score 1.000)
CLUSTER 1
VNG1001G_1
MTH142_1
MJ1616_1
MK1600_1
Ta0219_1
TVN1375_1
PH0307_1
PAB1250_1
YAR073w_1
YHR216w_1
YLR432w_1
YML056c_1
SPBC2F12.14c_1
aq_2023_1
TM1347_1
FN1231_1
DR1878_1
CAC2701_1
Cgl0587_1
Cgl2623_1
Rv1843c_1
Rv3411c_1
MT1891_1
MT3519_1
ML0387_1
ML2066_1
L21264_1
SPy2206_1
SP2228_1
SA0375_1
lin0179_1
lin2901_1
BS_guaB_1
BH0020_1
guaB_1
ZguaB_1
ECs3370_1
YPO2871_1
STM2511_1
VC0767_1
PA3770_1
HI0221.1_2
HI0221_1
PM0295_1
XF2430_1
NMB1201_1
NMA1372_1
RSc1429_1
HP0829_1
jhp0768_1
Cj1058c_1
AGc1108_1
SMc00815_1
BMEII0896_1
mlr8350_1
CC1617_1
CPn0172a
BBB17_1
CLUSTER 2
VNG1001G_3
MTH142_3
MJ1616_3
MK1600_3
Ta0219_3
TVN1375_3
PH0307_3
PAB1250_3
APE1507
YAR073w_3
YAR075w
YHR216w_3
YLR432w_3
YML056c_3
SPBC2F12.14c_3
aq_2023_3
TM1347_3
FN1231_3
DR1878_3
CAC2701_3
CAC3471
Cgl0587_3
Cgl0588
Cgl2623_3
Rv1843c_3
Rv3410c
Rv3411c_3
MT1891_3
MT3518
MT3519_3
ML0387_3
ML0388
ML2066_3
L158186
L21264_3
SPy1135
SPy2206_3
SP1249
SP2228_3
SA0375_3
SA1172
lin0179_3
lin2901_3
BS_guaB_3
BS_yumD
BH0020_3
slr1722
alr0051
guaB_3
guaC
ZguaB_3
ZguaC
ECs0108
ECs3370_3
YPO2871_3
YPO3428
STM0141
STM2511_3
BU204
VC0767_3
VCA0197
PA3770_3
HI0221_3
PM0295_3
XF2430_3
NMB1201_3
NMA1372_3
RSc1429_3
HP0829_3
HP0854
jhp0768_3
jhp0790
Cj1058c_3
AGc1108_3
SMc00815_3
BMEII0896_3
mlr8350_3
CC1617_3
CPn0172
BBB17_3

>COG0532 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0768
VNG1997G
MA1525
MTH259
MJ0262_1
MJ0262_3
MK1595
Ta1112
TVN0453
PH1095_1
PH1095_3
PAB0755_1
PAB0755_3
PAE1513
SSO0228
APE2374
YAL035w_2
YOL023w
SPAC56F8.03
SPBC1271.15c
ECU09g0070
aq_2032
TM0775
FN2020
DR1799
CAC1802
Cgl1939
Rv2839c
MT2905
ML1556
L0372
SPy1721
SP0556
SA1112
lin1362
BS_infB
BH2413
slr0744
alr3832
infB
ZinfB
ECs4049
YPO3496
STM3286
BU377
VC0643
PA4744
HI1284
PM0759
XF0235
NMB1643
NMA1897
RSc1289
HP1048
jhp0377
Cj0136
AGc131
SMc02914
BMEI1965
mlr5554
CC0042
RP552
RC0816
CT096
CPn0317
TP0891
BB0801
UU320
MYPU_2050
MPN155
MG142
CLUSTER 2
MK1564

>COG0542 (Putative duplication confidence score 1.000)
CLUSTER 1
MTH284
YDR258c
YLL026w
SPBC16D10.08c
SPBC4F6.17c
ECU11g1420
aq_1296
aq_1672
TM0198
TM1391
FN1941
DR0588
DR1046
DR1117
CAC0904
CAC0959
CAC1824
CAC3189
Cgl1714
Cgl1741
Cgl2622
Cgl2721
Rv0384c
Rv3596c
MT0397
MT3703
ML0235
ML2490
L0221
L0222
L166407
SPy0888
SPy1509
SPy2073
SP0338
SP0820
SP2194
SA0483
SA0835
SA2336
lin0264
lin0996
lin2309
BS_clpC
BS_clpE
BH0103
BH2179
sll0020
slr0156
slr1641
alr1963
alr2322
alr2999
alr5084
clpA
clpB
Z0254
ZclpA
ZclpB
ECs0223
ECs0968
ECs3455
YPO0506
YPO0971
YPO1368
YPO1471
YPO2946
YPO3275
YPO3599
STM0272
STM0945
STM2660
VC0711
VC1144
VCA0116
PA0090
PA0459
PA1662
PA2371
PA2620
PA2725
PA3365
PA4542
HI0859
PM1704
XF0381
XF1443
NMB0836
NMB1472
NMA1045
NMA1683
RSc1335
RSc2464
RSp0749
HP0033
HP0264
jhp0029
jhp0249
Cj0509c
Cj1108
AGc2524
AGl1041
AGl1346
SMc02109
SMc02433
BMEI0195
BMEI0816
mll0663
mll2335
mll3429
CC0878
CC2468
RP036
RC0059
CT113
CT286
CPn0144
CPn0437
TP0071
TP0549
TP0801
BB0369
BB0834
UU391
MPN531
MG355
CLUSTER 2
Rv2667_2
MT2741_2

>COG0543 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0528
MA0584
MA3786
MTH1212
MJ1446
MK0564
Ta0047
Ta0403
TVN0004
TVN1171
PH0878
PH1291
PH1874
PH1965
PAB0639
PAB1150
PAB1213
PAB1737
PAB1785
SSO0612
YIL043c
YKL150w
YML087c
YML125c
SPAC17H9.12c
SPCC970.03
aq_1305
aq_2098
TM0334
TM1639
FN0423
CAC1514
CAC1860
CAC2651
Cgl2354_1
Cgl2732
Rv0385
Rv1937_1
MT0398
MT1987_1
L183563
SP0963
lin1948
BS_pyrDII
BH2535
ubiB
ZubiB
ECs4772
YPO3116
YPO3768
STM2093
STM2549
STM3979
VC0312
PA2514
PA2516
PA4331
PA5236
NMB1359
NMA1571
RSc1091
RSc2434
AGc2205
RP006_2
RC0005_3
TP0736
CLUSTER 2
YOR037w

>COG0545 (Putative duplication confidence score 1.000)
CLUSTER 1
YDR519w
YLR449w_2
YML074c_2
YNL135c
SPAC27F1.06c
SPBC1347.02
SPBC839.17c
DR1839
Cgl0807
slr1761
alr0577
fklB
fkpA
ZfklB
ZfkpA
ECs4198
ECs5185
YPO0195
YPO3532
STM3453
STM4397
BU533
VC0354
VC2568
VCA0661
PA3262
PA3717
PA4572
PA5254
HI0574
PM1349
PM1898
XF1605
NMB0027
NMB1567
NMA0273
NMA1756
RSc0784
RSc1565
CC2799
CC3636
CT541
CPn0661
TP0862
CLUSTER 2
XF0644

>COG0548 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1280
MA4515
MTH183
MJ0069
MK1631
PH1718
PAB0292
PAE2882
SSO0156
APE1461
YER069w_1
SPAC4G9.09c_1
aq_2068
TM1784
DR1420
DR2442
CAC2389
Cgl1363
Rv1654
MT1692
ML1408
L0107
SA0176
lin1631
BS_argB
BH2898
slr1898
alr1245
argB
ZargB
ECs4888
YPO3925
STM4122
BU049
VC2643
PA5323
PM1119
XF1001_1
NMB1074
NMA1275
RSc0033
Cj0226
AGc666
SMc01726
BMEII0273
mlr4826
CC0283
RC0139
CLUSTER 2
argA_1
ZargA_1
ECs3675_1
YPO1022_1
STM2992_1
BU456_1
VC2316_1
PA5204_1
PM0828_1
NMB1876_1
NMA0580_1
RSc1250_1

>COG0553 (Putative duplication confidence score 1.000)
CLUSTER 1
AF2350
VNG6139G
VNG7099
MA0189
TVN0682
PH0900
PAB0591
SSO1653
SSO1655
APE0413
YAL019w
YBR073w
YBR114w
YBR245c
YDR334w
YER164w
YFR038w
YGL150c
YGL163c
YIL126w_1
YJR035w
YLR032w
YLR247c
YOR191w
YOR290c_1
YOR304w
YPL082c
SPAC11E3.01c
SPAC1250.01_1
SPAC13G6.01c
SPAC144.05
SPAC15A10.03c
SPAC1783.05
SPAC17A2.12
SPAC20G8.08c
SPAC22F3.03c
SPAC25A8.01c
SPAC3G6.01
SPAC3G6.12
SPBC1826.01c
SPBC23E6.02
SPBC582.10c
SPBP35G2.10
SPCC1235.05c
SPCC1620.14c_1
SPCC330.01c
SPCP25A2.02c
ECU01g0350
ECU03g1530
ECU06g0820
ECU09g0410
ECU09g1890
ECU10g1320
TM0990
FN1160
FN1386
DR1258
DR1259
DRB0136
CAC2996
CAC3303
CAC3441
Cgl0717
Cgl1138
Cgl1599
Cgl1697
Rv2101
MT2161
L104021
SPy0342
SP1523
lin1348
lin1685
BS_yqhH
BS_ywqA
BH0969
BH2817
BH2913
sll1366
all4900
all7026
all7172
alr4398
hepA
Z0067
Z5899
ECs0063
ECs5261
YPO0517
STM0096
VC1760
VC2506
PA0799
PA3308
HI0616
PM1837
XF0680
XF2295_1
XF2528
SMc02152
CT555
CT708
CPn0835
CPn0849
MPN020
MG018
CLUSTER 2
FN0414
pli0027
PM0696

>COG0557 (Putative duplication confidence score 1.000)
CLUSTER 1
VNG2647G
YDR293c_2
YMR287c_2
YOL021c
SPAC2C4.07c
SPBC26H8.10
SPBC609.01
SPCC16C4.09
ECU03g0700
aq_2046
TM0722
FN0608
DR0020
DR0353
CAC0715
Cgl2185
L0323
L25961
SPy0503
SP0975
SA0735
lin2543
BS_yvaJ
BH3553
sll1290
sll1910
all4450
alr1240
vacB
ZvacB
ECs5155
YPO0380
STM4368
BU565
VC2599
PA4937
HI0861
PM1954
XF1987
NMB0282
NMB1200
NMA1371
NMA2205
RSc1228
RSc2779
HP1248
jhp1169
Cj0631c
AGc2395
SMc01365
BMEII0665
mll0040
mlr0841
CC2453
CT397
CPn0504
TP0805
UU057
MYPU_3510
MPN243
MG104
CLUSTER 2
SPCC23B6.06

>COG0563 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0676
VNG1724G
MA1096
PH1117
PAB0739
YDR226w
YER170w
YKL024c
SPAC4G9.03
SPCC1795.05c
ECU06g0650
aq_078
TM1479
FN1298
DR2117
CAC3112
Cgl0542
Rv0733
MT0757
ML1832
L140714
SPy0074
SP0231
SA2027
lin2760
BS_adk
BH0155
sll1059
sll1815
all4196
alr0068
adk
Zadk
ECs0527
YPO3118
STM0488
BU484
VC0986
PA3686
HI0349
PM0284
XF0275
NMB0823
NMA1032
RSc2533
HP0618
jhp0561
Cj0639c
AGc3521
SMc01288
BMEI0778
mlr0322
CC1269
RP638
RC0985
CT128
CPn0244
TP0595
BB0417
UU251
MYPU_5670
MPN185
MG171
CLUSTER 2
FN0012
DR0202
DR0494
DR0974
DR2273
CAC2481
Cgl0315
Cgl1057
L16101
L88237
SPy1995
SP0837
lin1175
lin1449
BS_yqaC
BH1014
all3160
alr4795
PA4799
AGc2655
SMc01742
mlr5488

>COG0565 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1801
VNG1347C
MA0682
MTH1849
MJ1476
MK0519
Ta1010m
TVN0579
SSO0747
APE0555
DR0576
slr0120
alr4542
yfhQ
Z3799
ECs3398
YPO2898
STM2545
VC0746
PA3817
HI0380
PM0316
XF2475
NMB1348
NMA1560
RSc1161
AGc3426
SMc00482
BMEI0794
mlr0038
CC2520
RC0160
CLUSTER 2
lasT
ZlasT
ECs5361
STM4600

>COG0567 (Putative duplication confidence score 1.000)
CLUSTER 1
YIL125w
SPBC3H7.03c
DR0287
Cgl1105_3
Rv1248c_3
MT1286_3
ML1095_3
SA1245
BS_odhA
BH2206
sucA
ZsucA
ECs0751
YPO1113
STM0736
BU302
VC2087
PA1585
HI1662
PM0277
XF1550
NMB0955
NMA1149
RSc1269
RSp1364
AGc4776
SMc02482
BMEI0140
mll4301
CC0339
RP180
RC0227
CT054
CPn0378
CLUSTER 2
Cgl1105_1
Rv1248c_1
MT1286_1
ML1095_1

>COG0568 (Putative duplication confidence score 1.000)
CLUSTER 1
aq_1452
aq_1490
TM1451
FN1317
FN1318
DR0916
CAC1300
CAC2052
Cgl1865
Cgl1873
Rv2703
Rv2710
MT2777
MT2783
ML1014
ML1022
L0139
SPy0782
SP1073
SA1390
lin1491
BS_sigA
BH1376
sll0184
sll0306
sll1689
sll2012
slr0653
all1692
all5263
all7179
all7608
all7615
alr3800
alr3810
alr4249
rpoD
rpoH
rpoS
ZrpoD
ZrpoH
ZrpoS
ECs3595
ECs3950
ECs4310
YPO0643
YPO3355
YPO3811
STM2924
STM3211
STM3568
BU025
BU055
VC0150
VC0517
VC0534
PA0376
PA0576
PA3622
HI0269
HI0533
PM1241
PM1584
XF1350
XF2691
NMB0712
NMB1538
NMA0917
NMA1737
RSc0374
RSc1207
RSc2215
HP0088
jhp0081
Cj1001
AGc3929
AGc4439
SMc00646
SMc01563
SMc03873
BMEI0280
BMEI0378
BMEI0532
mll2466
mlr3741
mlr3862
CC3047
CC3098
RP303
RP858
RC0407
RC1329
CT615
CPn0756
TP0493
TP1012
BB0712
BB0771
UU349
MYPU_4540
MPN352
MG249
CLUSTER 2
DR2482

>COG0578 (Putative duplication confidence score 0.538)
CLUSTER 1
VNG1070Gm
VNG1969G
Ta0633
TVN0840
SSO2526
glpA
ZglpA
ECs3126
YPO3826
STM2284
VCA0747
PA4991
HI0685
PM1442
CLUSTER 2
YIL155c
SPCC1223.03c
ECU10g0870
DR1019
Cgl1608
Rv2249c
Rv3302c
MT2309
MT3401
ML0713
L0013
SPy1683
SP2185
SA1142
lin1331
BS_glpD
BH1095
sll1085
glpD
ZglpD
ECs4269
YPO3937
STM3526
VCA0657
PA3025
PA3584
XF2266
RSc3045
AGl1902
AGl1938
AGl2503
SMb20499
SMc01620
SMc02520
BMEI1749
BMEII0429
mll0710
mlr7270
BB0243

>COG0584 (Putative duplication confidence score 1.000)
CLUSTER 1
VNG1846C
Ta0634
TVN0841
PAB0180
PAE1058
APE0262
YPL110c_3
YPL206c
SPAC4D7.02c
SPAPB1E7.05_3
ECU01g1380
TM1621
FN1891
FN1908
FN1954
DR0542
DR2084
DRB0111_2
CAC0430
CAP0015
Cgl1354
Cgl2845
Rv0317c
Rv2277c
Rv3842c
MT0332
MT2337
MT3950
ML0074
L1007
L18600_2
L58914_2
SPy0839_2
SP0994_2
SA0036
SA0220_2
SA0820
SA0969
SA1542
lin0625_2
lin1330
BS_glpQ
BS_yhdW
BS_yqiK
BH1080
BH1776
BH3700
all0275_2
all1051
glpQ
ugpQ
ZglpQ
ZugpQ
ECs3124
ECs4295
YPO2028
YPO2035
YPO3232
YPO3792
YPO3827
STM2282
STM3553
VC1554
VCA0136
PA0347
PA2352
PA2990
PA4792
HI0689
PM1444
RSc0502
RSc1268
AGc2533
AGl1291
AGl598
AGpA81
AGpT266
SMc02104
SMc02646
SMc03129
BMEI0819
mlr0660
mlr8455
CC2157
CC3172
CC3272
TP0257
MYPU_2630
MPN420
MPN566
MG293
MG385
CLUSTER 2
mlr9158

>COG0587 (Putative duplication confidence score 1.000)
CLUSTER 1
aq_1008
TM0461
FN1383
DR0507
CAC0516
CAC1223
Cgl2079
Rv1547
MT1598
ML1207
L0307
SPy1284
SP0895
SA1525
lin1609
BS_dnaE
BS_yorL
BH3169
sll1572
slr0603
all3578
alr1054
dnaE
ZdnaE
ECs0186
YPO1059
STM0231
BU238
VC2245
PA3640
HI0739
PM0034
XF0204
NMB1827
NMA0632
RSc2205
HP1460
jhp1353
Cj0718
AGc2379
SMc01375
BMEI1137
mll0870
CC1926
RP778
RC1211
CT545
CPn0666
TP0669
BB0579
UU415
MYPU_7190
MPN378
MG261
CLUSTER 2
Cgl0620
Rv3370c
MT3480
PA0669
RSp0800
AGl3173
AGpAbx5
AGpT175
SMa0892
SMc03788
BMEI1876
mlr4428
CC3211

>COG0590 (Putative duplication confidence score 1.000)
CLUSTER 1
MA2341
MA2559
MA3407
YJL035c
YLR316c
YPR062w
SPAP27G11.04c
SPBC16D10.10_2
SPCC965.14c
ECU09g0990
ECU09g1960
aq_903
DR0603_1
DR1207_2
CAC0123
Cgl0229
Cgl0626
Rv0828c
Rv3114
Rv3752c
MT3196
MT3859
ML2474
L127182
SP0020
SA0516
lin2867
BS_yaaJ
BS_yknA
BH0033
sll0051
sll1631
all3284
all4872
alr4634
yfhC
ZyfhC
ECs3425
YPO2923
STM2568
BU255
VC0864
PA2499
PA3767
HI0906
PM0078
XF1012
NMB0933_2
NMA1129
RSc1451
AGc1234
SMc00905
BMEII1040
mll2512
mll8252
CC0231
RP831
RC1285
CT844
CPn1001
CLUSTER 2
slr1161
AGc2681
SMc01052
BMEII0619
mll5129

>COG0593 (Putative duplication confidence score 1.000)
CLUSTER 1
aq_322
TM0926
DR0002
CAC0001
Cgl0001
Rv0001
MT0001
ML0001
L0274
SPy0002
SP0001
SA0001
lin0001
BS_dnaA
BH0001
sll0848
alr2009
dnaA
ZdnaA
ECs4637
YPO4097
STM3838
BU012
VC0012
PA0001
HI0993
PM1161
XF0001
NMB1903
NMA0552
RSc3442
HP1529
jhp1417
Cj0001
AGc1670
AGc566
SMc01167
BMEI1362
BMEI1943
mll5581
CC0008
CC1058
RP601
RC0916
CT250
CT275
CPn0309
CPn0424
TP0001
BB0437
UU001
MYPU_0010
MPN686
MG469
CLUSTER 2
yfgE
Z3759
ECs3358
YPO3071
STM2496
PA0947
HI1225.1
PM0017
XF0590
NMB1076
NMA1279
RSc2625
AGc2114
SMc00617
BMEI1238
mlr7968
CC1711
RP631
RC0979

>COG0595 (Putative duplication confidence score 0.800)
CLUSTER 1
VNG1149Cm
MA0605
MTH49
MJ0861
MK0775
PH1071
PAB1751
FN1210
DR2417m
CAC1683
Cgl1924
Rv2752c
MT2822
ML1512
L61727
L89418
SPy1020
SPy1876
SP0121
SP0613
SA0940
SA1118
lin1026
lin1473
BS_ykqC
BS_ymfA
BH2398
BH2662
slr0551
all3678
HP1430
jhp1323
Cj1710c
AGc2368
SMc01929
BMEI1143
mll1350
CC1934
RP441
RC0613
UU509
UU570
MYPU_7040
MYPU_7050
MPN280
MPN621
MG139
MG423
CLUSTER 2
MTH912
MK0315
MK1258
MK1274
PH0466
PAB1035
TM0663

>COG0602 (Putative duplication confidence score 0.722)
CLUSTER 1
AF0441
VNG6305C
MA4197
MTH1227
MJ1645
MK0818
Ta1359
TVN0296
PH0635
PAB1446
PAE0010
SSO0624
aq_2035
CAC3625
SA0665
BS_ykvL
BH2242
sll2011
alr4161
ygcF
ZygcF
ECs3633
YPO3374
STM2951
VC1365
PA0975
HI1189
PM0184
XF1894
NMB0529
NMA0707
RSc1449
HP0934
jhp0868
Cj0160c
AGl2955
SMb20938
BMEI0093
mll5796
msl8680
CC3159
RP607
RC0933
CLUSTER 2
MTH287
FN0312
CAC0481
L72609
SPy2105
SP0205
SA2409
lin0306
alr0731
nrdG
ZnrdG
ECs5214
YPO3455
STM4451
VCA0512
PA2726
HI1155
PM0941

>COG0608 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0075
AF0291
AF0699
AF0735
VNG2333C
MA0823
MA2569
MA3432
MTH1422
MTH164
MJ0831
MJ0977
MJ1071
MK0061
MK0204
MK1592
Ta0527
Ta1132m
TVN1003
TVN1209
PH0059
PAB0034
PAB1596
PAE2792
PAE2794a
SSO0295
aq_2155
TM1546
FN0374
FN2018
DR1126
CAC1198
CAC2232
CAC2276
Cgl1691
L0259_1
SPy0926_1
SP0611_1
SA1462_1
lin1560_1
BS_yorK
BS_yrvE_1
BH1240_1
sll1354_1
all1989
alr5127
recJ
ZrecJ
ECs3764
YPO0890
STM3042
VC2417
PA3725
HI1214
PM0192
XF1110
NMB0842
NMA1052
RSc1115
HP0348
jhp0322
Cj0028
AGc2915
SMc00292
BMEI0728
mll0927
CC1386
RP528
RC0761
CT447
CPn0563
TP0704
BB0254
CLUSTER 2
HP0425
HP1410
jhp1303

>COG0616 (Putative duplication confidence score 0.636)
CLUSTER 1
AF0856
MA2409
MJ0137
MJ1495
PH0282
PAB2437
APE2212
aq_814
TM0916
Cgl1774
alr3825
mlr4682
CLUSTER 2
VNG0620G
MA4047
MTH806
MJ0651
Ta0074
TVN0029
PH1569
PAB1960
PAE2794_1
PAE3679_1
aq_2080
FN0873
FN1271
DR2096
Rv0724
MT0749
ML1839
lin1627
BS_yteI
BH3198
sll1703
slr0021
all4013
all4590
sohB
sppA
Z1886
Z2134
Z2361
ZsohB
ZsppA
ECs1108
ECs1633
ECs1844
ECs2176
ECs2472
ECs2732
YPO2162
YPO2216
STM1295
STM1716
STM2605
BU283
VC1060
VC1994
PA1832
PA2973
HI1541
HI1682
PM0585
PM0671
XF2685
NMB1587
NMB2127
NMA0305
NMA1778
RSc0858
RSc1044
HP1435
jhp1328
Cj0068
AGc1130
AGc588
SMc00857
SMc01135
BMEI1535_2
BMEI1793
mll7424
mlr3201
CC0927
RP398
RP525
RC0545
RC0758
CT494
CPn0613
TP0997

>COG0619 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0730
AF1842
VNG1632G
MA0393
MA0869
MA1419
MA1748
MA3552
MA4019
MA4022
MA4343
MTH132
MTH1705
MTH453
MJ1089
MJ1571
MK0181
PH0131
PAB2261
SSO1892
SSO2031
APE2155
TM1868
FN2006
DR2468
CAC0772
CAC1367
CAC3100
Cgl1056
Cgl1915
Cgl2771
Rv2325c
MT2387
ML0849
L125503
L77627
SPy1788
SPy2193
SP0484
SP1437
SP2219
SA0927
SA2019
SA2475
lin1169
lin2748
lin2783
BS_ybaF
BS_ykoC
BH0166
sll0384
slr1978
alr0484
alr3945
alr3948
Z4269
ECs3801
STM2021
STM3073
HI1619
AGc1361
SMc00963
BMEI0637
UU537
MYPU_3880
MPN195
MPN431
MG181
MG302
CLUSTER 2
Cgl0520

>COG0621 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1247
VNG1861C
MA1153
MTH826
MJ0867
MK1081
Ta0256
TVN1338
PH1875
PAB1134
PAE2939
SSO2380
APE1530
aq_284
aq_474
TM0653
TM0830
FN0475
FN1214
DR1150
CAC1286
CAC1838
Cgl1904
Rv2733c
MT2803
ML0989
SA1134
SA1405
BS_ymcB
BS_yqeV
BH1351
BH2372
sll0996
alr1312
yleA
ZyleA
ECs0699
YPO2620
STM0670
BU441
VC0962
PA3980
HI0019
PM1001
XF0906
NMB1866
NMA0590
RSc0531
HP0269
HP0285
jhp0254
jhp0270
Cj0458c
Cj1006c
AGc4885
AGc623
SMc01115
SMc03855
BMEI0132
BMEI1976
mlr4319
mlr5534
CC3684
RP416
RP808
RC0580
RC1246
CPn0477
TP0269
TP0754
CLUSTER 2
aq_849
TM1862
DRA0189
CAC1813
slr0082
alr1222
yliG
ZyliG
ECs0915
STM0852
VC2620
PA0916
PM1571
RSc1636
HP0734
jhp0671
Cj1454c
BMEII0703
mlr0499
CPn0251

>COG0624 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0051
AF0522
AF0904
MJ0457
MJ1497
MK0128
MK1581
Ta0934m
TVN1079
PH0265
PH1153
PH1288
PH1715
PAB0294
PAB0581
PAB0723
PAE2335
PAE2798
SSO0162
SSO0790
SSO1007
SSO1538
SSO2737
APE0632
APE1467
APE1917
YBR281c_2
YFR044c
YJL172w
SPAC24C9.08
SPBC1198.08
SPCC757.05c
aq_547
TM0129
TM1666
FN0278
DR1413
DR2017
DR2025
DR2493
CAC2723
Cgl1085
Cgl2670
Cgl2768
Rv1202
Rv2141c
Rv2522c
MT1240
MT2199
MT2598
ML1059
ML1193
ML1288
L0115
L59867
SPy1070
SPy1542
SP0150
SP0623
SP2153
SA1572
SA1814
lin0289
lin1661
BS_argE
BS_ylmB
BS_ytjP
BH0352
BH1059
BH2678
BH3272
BH3875
argE
dapE
ygeY
ZargE
ZdapE
ZygeY
ECs3334
ECs3745
ECs4886
YPO3053
YPO3928
STM2483
STM4120
BU047
BU095
VC2152
VC2645
PA1162
PA2787
PA5206
PA5390
HI0102
PM0932
PM1022
PM1117
XF0116
XF1000
NMB1530
NMA1730
RSc1302
RSc1390
RSc1641
RSc3093
RSc3273
RSp0273
RSp0487
HP0212
jhp0198
Cj1048c
AGc165
AGc647
AGl2847
AGpA709
SMa1836
SMc01096
SMc02852
BMEI1827
BMEII0268
mll3297
mll6018
mll7049
mlr1185
mlr4849
mlr7167
CC0275
CC0736
CC1605
CC3239
CC3631
RP874
RC1347
CPn0980
CLUSTER 2
SSO2719
DR1154
lin0541
BS_yurH
BH0761
ylbB
ZylbB
ECs0578
YPO3249
STM0527
PA0444
HI0588
PM0160
AGc4327
AGl3478
SMb21435
SMc01820
BMEI1643
mll1631
mll7658
mlr0967
mlr7938
CC2603

>COG0630 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0338
AF0659
AF0996
AF1049
VNG0823G
VNG0949G
MA0234
MA1299
MA3056
MA3082
MA3096
MA3975
MJ0900
MJ1287
MJ1288
Ta0559
Ta0901
Ta0904
TVN0613
TVN1012
TVN1015
PH0557
PH0650_3
PH1309
PAB0563
PAB1386
PAB1457_3
PAE0773
PAE2119
PAE2399
PAE2778
SSO0120
SSO2316
SSO2387
SSO2680
APE0695
APE1896
APE2208
XFa0015
HP0525
HP1421
jhp0474
jhp1316
AGpAbx65
AGpT14
SMa1302
BMEII0035
mlr9260
CC2423
RP292
RC0390
CLUSTER 2
VNG0218G

>COG0635 (Putative duplication confidence score 1.000)
CLUSTER 1
aq_1424
TM1166
FN0560
FN0771
FN1612
DR0130
CAC1279
CAC2271
Cgl2240
Rv2388c
MT2457
L0193
SPy1040
SP1409
SA1412
lin1513
BS_hemN
BS_hemZ
BH1152
BH1343
sll1917
all4956
yggW
ZchuW
ZyggW
ECs3831
ECs4383
YPO0286
YPO0946
STM3104
STM4012
BU550
VC0455
VCA0909
PA0386
HI0463
PM1669
XF1507
NMB0665
NMA0864
RSc2161
HP1226
jhp1147
Cj0363c
Cj0580c
AGc568
SMc01147
BMEI1771
mlr4627
CC0145
RP175
RC0219
CT052
CPn0380
TP0186
BB0656
UU274
CLUSTER 2
aq_2124
sll1876
alr3126
hemN
ZhemN
ECs4789
YPO0021
STM4004
VC0116
PA1546
PM1833
NMB0379
NMA2108
RSc3284
HP0665
jhp0610
Cj0992c
AGc2945
SMa1266
BMEI1293
BMEII0096
mll5815
mll6408
mlr6390
mlr6633
CC1411
CT746
CPn0889

>COG0638 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0481
AF0490
VNG0166G
VNG0880G
MA1779
MA3873
MTH1202
MTH686
MJ0591
MJ1237
MK0385
MK1228
Ta0612
Ta1288
TVN0304
TVN0663
PH0245
PH1402
PH1553
PAB0417
PAB1867
PAB2199
PAE0807
PAE2215
PAE3595
SSO0278
SSO0738
SSO0766
APE0507
APE0521
APE1449
YBL041w
YER012w
YER094c
YFR050c
YGL011c
YGR135w
YGR253c
YJL001w
YML092c
YMR314w
YOL038w
YOR157c
YOR362c
YPR103w
SPAC22D3.07
SPAC22F8.06
SPAC31A2.04c
SPAC31A2.17c
SPAC323.02c
SPAC4A8.13c
SPAC6G10.04c
SPBC106.16
SPBC4C3.10c
SPBC577.10
SPBC646.16
SPCC1442.06
SPCC1795.04c
SPCC63.12c
ECU02g0340
ECU05g0290
ECU05g1340
ECU05g1400
ECU07g1040
ECU07g1420
ECU08g0280
ECU08g1580
ECU08g1870
ECU09g0330
ECU09g0720
ECU10g0550
ECU10g1450
ECU11g1670
Rv2110c
MT2170
ML1322
CLUSTER 2
Rv2109c
MT2169
ML1323

>COG0645 (Putative duplication confidence score 0.500)
CLUSTER 1
VNG1964a
aq_1484
DR2139
DR2467
Rv2004c_2
MT2060_2
slr0207_2
alr4787_2
PA4701_2
mll6593_2
CC0920_2
CLUSTER 2
DR0609
SMc02847

>COG0651 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1825
VNG0560C
VNG0562C
VNG0563G
MA4368
MA4371
MA4569
MTH1246
MJ1309
TVN1455
TVN1458
PH0941
PH1431
PH1451
PH1452
PAB0490
PAB0806
PAB1392
PAB1402
PAB1888
PAB2416
PAE1576
SSO0328_1
SSO1021
SSO1024
APE1415
TM1105
TM1211
TM1212
DR0883
Cgl0268
Cgl2674
Rv0083
Rv0086
MT0090
MT0093
SA0581
SA0810
lin2480
BS_yufD
BH1316
slr2007
slr2009
all1842
hycC
hyfB
hyfF
ZhycC
ZhyfB
ZhyfF
ECs3344
ECs3348
ECs3579
STM2851
VCA0155
PA1056
AGc1663
AGc899
SMa1538
SMa1541
SMc00054
SMc03181
BMEII0768
RP283
RP284
RC0381
RC0382
CLUSTER 2
RP282
RC0378

>COG0657 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1716
MA2629
TVN0727
SSO2493
SSO2517
SSO2521
YDR428c
YGR263c
SPAC1039.03
SPAC4A8.06c
SPAPB1A11.02
SPBPB2B2.02
TM1160
DR0133
DR0821_2
DR1485
DRA0340
DRB0033_1
CAC2917
Cgl0119
Cgl0151
Cgl0872
Cgl1142_1
Rv0217c
Rv0220
Rv1076
Rv1399c
Rv1400c
Rv1426c
Rv2284
Rv2385
Rv2485c
Rv2970c
Rv3084
Rv3097c_2
Rv3487c
MT0227
MT0230
MT1106
MT1443
MT1444
MT1469
MT2342
MT2453
MT2559
MT3048
MT3169
MT3181_2
MT3591
ML0314
ML1243
L141530
L42784
SPy1308
SPy1718
SA0310
SA0610
SA2140
SA2323
lin2194
BH2248
BH2806
sll0644
alr0079
aes
ZybaC
ECs0529
YPO2007
YPO2336
STM0490
STM4032
VCA0490
PA2098
PA5384
XF1253
XF1743
RSc0439
RSc1772
RSc3312
RSp0232
RSp1108
RSp1111
RSp1429
AGc2981
AGc4503
AGpA499
SMa0259
SMc01093
SMc01650
mll0618
mll1869
mll3568
mll4497
mll5717
mll7218
mlr0240
mlr1247
mlr5045
CC0771
CC1226
CC2298
CC2313
CC3346
TP0935
CLUSTER 2
SPAC8F11.08c

>COG0663 (Putative duplication confidence score 1.000)
CLUSTER 1
MA1098
MA1134
MA2536
MTH1588
MJ0304
MK0112
Ta0552
Ta0881m
TVN0606
TVN0980
PH1591
PAB0393
SSO0372
aq_1660
DR2089
CAC1048
Cgl0121
Rv3525c
MT3625
BS_ytoA
BH0211
BH3289
sll1031_1
sll1636
all0865_1
alr1024
caiE
paaY
yrdA
Z4650
ZcaiE
ECs0038
ECs4145
STM0069
STM3399
VC0058
PA0066
PA3753
PA5540
XF1984
XF2095
NMB0625
NMA0833
RSc1133
Cj0229
AGc2798
SMc04241
BMEI0736
mll0380
mlr0180
CC2643
RP516
RC0635
CLUSTER 2
MK0772_2

>COG0674 (Putative duplication confidence score 0.727)
CLUSTER 1
AF0469
AF0749_2
VNG0474G_2
VNG1128G_2
MA2910
MA3075_2
MTH1033
MTH536_2
MTH704
MJ0276
MK0728
Ta0259m_2
Ta0773_2
TVN0846_2
TVN1335_2
PH1662
PH1666
PAB0346
PAB2359
PAE0939_2
PAE1559_2
PAE2736_2
SSO2815_2
APE1473_2
APE2126_2
TM0878
TM1164_2
TM1759
CAC2459_2
Rv2455c_2
MT2530_2
SA1131_2
BH2374_2
HP0589
jhp0537
Cj0536
CLUSTER 2
AF1701
AF2053
MA0032
MTH1739
MJ0267
MK0082
Ta0628m
TVN0835
PH0680
PH0684
PAB1472
PAB1475
PAE1042
PAE3275
SSO1207
SSO2129
SSO2757
YFR030w_1
YJR137c_1
SPAC10F6.01c_1
SPCC584.01c_1
aq_1167
aq_1195
TM0017
FN1170_1
FN1421_1
FN1748
FN1749
CAC2229_1
CAC2499_1
L29321_1
lin0824_1
sll0741_1
alr1911_1
alr2803_1
ydbK_1
ZydbK_1
ECs2000_1
YPO2334_1
STM1651_1
VCA0530_1
HP1110
jhp1037
Cj1476c_1
TP0939_1

>COG0675 (Putative duplication confidence score 1.000)
CLUSTER 1
VNG0013C
VNG0026C
VNG0042G
VNG0044H
VNG0286C
VNG2652H
VNG6181H
VNG6221H
VNG6361G
VNG6406H
MA0258
MA1009
MA1041
MA1786
MA3213
MA3361
MA3720
MA4675
MJ0013
MJ0751
MJ0752
MJ0856.1
MJ0857
MJ1635
MK0605
Ta0028
Ta0029
Ta0381
Ta0382
Ta0475
Ta0564
Ta1471
Ta1472
TVN0006
TVN0043
TVN0248
TVN0323
TVN0468
TVN0712
TVN0713
TVN0714
TVN0764
TVN0770
TVN0842
TVN0903
TVN0952
TVN1131
TVN1187
TVN1222
PH0585
PH0630
PAB1452
PAB1802
PAB2077
PAE1076
PAE1827
PAE2522
PAE2770
PAE3530
SSO0008
SSO0794
SSO0797
SSO0801
SSO0842
SSO1072
SSO1182
SSO1187
SSO1216
SSO12210
SSO1316
SSO1336
SSO1341
SSO1347
SSO1348
SSO1366
SSO1368
SSO1475
SSO1498
SSO1504
SSO1521
SSO1652
SSO1659
SSO1672
SSO1681
SSO1682
SSO1829
SSO1844
SSO1916
SSO1967
SSO1974
SSO2123
SSO2124
SSO2143
SSO2144
SSO2782
SSO2785
SSO2811
SSO2944
SSO3153
SSO3172
SSO3217
SSO3256
SSO7675
SSO7710
SSO8288
SSO9268
aq_1459
aq_716
aq_aa05
TM0047
TM0135
TM0776
TM0970
TM1003
TM1026
TM1044
TM1677
TM1831
DR0178
DR0666
DR0978
DR1381
DR1593
DR1651
DR1933
DR2324
DR2424
Rv0031
Rv0606
Rv0829
Rv0922
Rv2791c
Rv2885c
Rv2978c
Rv3827c
MT0035
MT0949
MT2861
MT2953
MT3056
MT3935
slr2062
all0314
all0315
all1608
all1684
all3986
all4465
all4675
all5207
all7008
all7085
all7148
all7158
all7245
all8010
all8068
all8070
alr1157
alr1531
alr2168
alr2719
alr3372
alr4104
alr7147
alr7153
alr7228
alr7231
alr7325
alr7329
ydcM
Z3664
Z5816
ECs3276
ECs5183
PSLT035
STM2599
XF0536
XF1850
HP0413
HP0438
HP0989
HP0997
HP1095
HP1534
jhp0826
BBH40
BBI41
CLUSTER 2
MJ0012m

>COG0689 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0493
MTH683
MK0381
Ta1293
TVN0307
PH1549
PAB0420
PAE2207
SSO0735
APE1447
YGR095c
YGR195w
SPAC3G9.10c
SPBC115.01c
SPBC211.08c
ECU09g0830
ECU10g0270
aq_924
FN1851_1
DR1585
Cgl2451
Rv1340
MT1381
ML1174
lin1201
BS_rph
BH3068
alr0069
rph
Zrph
ECs4518
YPO0044
STM3734
VC0210
PA5334
HI0273
PM1876
XF1505
NMB1499
NMA1702
RSc2159
AGc571
SMc01144
BMEI1775
mlr4622
CC0152
RP628
RC0975
CLUSTER 2
YGR158c

>COG0696 (Putative duplication confidence score 1.000)
CLUSTER 1
VNG1887G
MA2671
MA4007
ECU10g1060
CAC0712
SA0730
lin2550
BS_pgm
BH3557
slr1945
all4182
gpmI
ZyibO
ECs4490
YPO0064
STM3704
VC0336
PA5131
HP0974
jhp0908
Cj0434
AGl2721
UU182
MYPU_4590
MPN628
MG430
CLUSTER 2
MA3365

>COG0698 (Putative duplication confidence score 0.800)
CLUSTER 1
aq_1138
TM1080
FN1874
CAC0726
CAC2880
CAC2953
CAC2954
Cgl2369
Rv2465c
MT2540
ML1484
SPy1707
SPy1708
SPy1922
SPy1923
SP1192
SP1193
SA1996
SA1997
lin0363
lin0498
lin2811
lin2821
BS_ywlF
BH3767
ssl2153
rpiB
YPO3353
PM1645
HP0574
jhp0521
Cj0925
SMb20371
SMc01613
BMEII0424
msr7277
RP299
RC0402
UU006
MYPU_6120
MPN595
MG396
CLUSTER 2
CAC2606
SPy0637
SP0319
YPO1991
STM1933

>COG0715 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0088
MA0065
MJ1181
MK0601
YDL244w
YFL058w
YJR156c
YNL332w
SPCC1223.02
TM0202
TM0484
FN0236
DR0268
DR1277
DR1655
CAC0106
CAC0620
CAC1400
Cgl1195
Cgl1246
Cgl1257
SP2197
SA0167
BS_ssuA
BS_ytlA
BS_ytlB
BH1209
BH2682
sll0473
sll1080
sll1450
sll1452_2
slr0040
slr0043_2
all3333
alr0608
alr0610_2
alr2877
alr2879_2
ssuA
ZycbO
ECs1019
YPMT1.42
YPO2286
YPO3624
VC1369
PA0186
PA1786
PA2296
PA2309
PA2328
PA2594
PA2595
PA2596
PA2599
PA3445
PA3449
PA3513
HI0357
PM1263
RSc0381
RSc1198
RSc1338
RSc3391
RSp1383
RSp1509
AGc1281
AGc1930
AGc256
AGc3458
AGc4336
AGl1197
AGl129GM
AGl1399
AGl1881gl
AGl1886
AGl2760
AGl2788
AGl3061
AGl928
AGpT119
AGpT163
SMa0585
SMa2087
SMa2093
SMb20570
SMb21114
SMc01827
SMc02344
BMEI1737
BMEII0109
BMEII0797
BMEII0963
mll1256
mll1296
mll1621
mll1755
mll4559
mll6979
mll8573
mll9181
mlr2856
mlr2858
mlr6799
mlr7112
mlr7949
CC0609
CC1833
CC2633
CT854_2
CPn1012_2
CLUSTER 2
AF0640

>COG0733 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1995
VNG1526G
VNG1528G
VNG6261G
MA0901
MA1518
MJ1319
PH1372
PAB1850
aq_2077
FN1944
FN1989
Cgl1001
SP0737
SA0417
lin1873
BS_yhdH
BS_yocR
BH0217
BH1128
BH3439
VC1669
VC2012
VC2283
HI0736
HI1690
PM0380
PM0718
NMB1707
NMB1975
NMA0470
NMA1961
HP0497
HP0498
jhp0449
jhp0450
Cj0601c
Cj0934c
Cj0935c
CT231
CPn0290
TP0023
CLUSTER 2
SP0738

>COG0744 (Putative duplication confidence score 1.000)
CLUSTER 1
TM0886
FN0525
DR0479
DR1417
CAC2301
CAP0076
Cgl0279
Cgl2930
Rv0050
Rv3682
MT0056
MT3784
ML2308
ML2688
L129183
L160485
L191431
SPy0097
SPy1649
SPy2059
SP0369
SP2010
SP2099
SA1283
SA1551
SA1691
lin2006
lin2331
BS_pbpD
BS_pbpF
BS_ponA
BS_ywhE
BH1201
BH1702
BH3229
BH3812
sll0002_2
sll1434
slr1710
all2952
all2981
alr4579
alr5324
alr5326
mrcB
mtgA
ZmrcB
ZmtgA
ECs0153
ECs4087
YPO3393
YPO3552
STM0190
STM2439
STM3326
BU200
VC0602
PA0378
PA4700
HI0831
HI1725
PM0324
PM0456
XF0884
XF1715
NMB0357
NMA2130
RSc2776
HP0597
jhp0544
Cj0508
AGc158
AGc1696
AGc4930
SMa1905
SMc00122
SMc02856
SMc03883
BMEI0271
BMEI1351
BMEI1831
mll3238
mll3783
mll7657
CC0252
CC0325
CC1516
CC3277
CLUSTER 2
VC1321
PA0788
RSc1476

>COG0753 (Putative duplication confidence score 1.000)
CLUSTER 1
YDR256c
YGR088w
SPCC757.07c
DR1998
DRA0259
Cgl0256
SA1170
lin2920
BS_katA
BS_katB
BS_katX
BH1306
BH1980
katE
ZkatE
ECs2438
YPO1207
STM1318
VC1585
PA2147
PA4236
PA4613
HI0928
PM0032
NMB0216
NMA0050
RSp1581
HP0875
jhp0809
Cj1385
AGpA722
SMb20007
SMc00819
BMEII0893
mlr2101
CLUSTER 2
HP0485
jhp0437

>COG0754 (Putative duplication confidence score 1.000)
CLUSTER 1
sll0023
ygiC
yjfC
ZygiC
ZyjfC
ECs3926
ECs5162
YPO0660
STM3188
STM4376
HI0929
HP0233
jhp0218
Cj0372
AGc3820
AGc3823
CC2361
CLUSTER 2
gsp_2
Zgsp_2
ECs3873_2
STM3139_2

>COG0764 (Putative duplication confidence score 1.000)
CLUSTER 1
aq_056
TM0801
FN0594
DR1074
CAC3571
L0188
L160425
SPy1746
SP0424
SA1901
lin2668
BS_ycsD
BS_ywpB
BH1850
BH3735
sll1605
alr2271
fabZ
Z1546
Z4857
ZfabZ
ECs0182
ECs1286
ECs4332
YPO1055
YPO1454
STM0227
BU237_2
VC2249
PA3645
HI1062
PM1995
XF0774
XF1044
NMB0179
NMA0088
RSc0432_2
RSc1415
RSp0367_2
HP1376
jhp1290
Cj0273
AGc2558
AGc2940
SMc02092
SMc04277
BMEI0832
mll0634
CC1912
RP008
RC0009
CT532
CPn0651
CLUSTER 2
all1643_2
fabA
ZfabA
ECs1038
YPO1430
STM1067
VC1483
PA1610
HI1325
PM0484
XF0572
AGc246
SMc00328
BMEI1956
mll5569
CC3720

>COG0767 (Putative duplication confidence score 1.000)
CLUSTER 1
aq_1530
aq_355
Rv0167
Rv0587
Rv1964
Rv3501c
MT0176
MT0616
MT2016
MT3605
ML2587
slr1045
slr1344
alr4015
yrbE
ZyrbE
ECs4073
YPO3574
STM3312
VC2519
PA3211
PA4455
HI1086
PM0175
XF0420
XF1303
NMB1965
NMA0486
RSc0313
RSc2961
HP1466
jhp1359
Cj1646
AGc3035
SMc00174
BMEI0965
mll0801
CC2318
CC3695
RP096
RC0129
CLUSTER 2
Rv0168
Rv0588
Rv1965
Rv3500c
MT0617
MT2017
MT3604
ML2588

>COG0769 (Putative duplication confidence score 1.000)
CLUSTER 1
MTH734
MK0752
aq_1747
TM0237
FN1225
DR0297
CAC2129
CAC2819
Cgl2113
Rv2158c
MT2217
ML0909
L53929
SPy0388
SP1530
SA0876
lin2144
BS_murE
BH2571
slr0528
slr2002_2
all1663
all3879_2
murE
ZmurE
ECs0089
YPO0550
STM0123
BU221
VC2406
PA4417
HI1133
PM0137
XF0793
NMB0414
NMA2071
RSc2849
HP1494
jhp1387
Cj1641
AGc3809
SMc01861
BMEI0574
mll1560
CC2559
RP597
RC0912
CT269
CPn0418
TP0933
BB0201
CLUSTER 2
MK0926
CAC0962
Cgl0247
Rv3712
MT3815
ML2326
L114717
SPy1035
SP1589
SA1708
slr0938
alr2717

>COG0772 (Putative duplication confidence score 1.000)
CLUSTER 1
aq_025
aq_1139
TM0233
TM0839
FN0042
FN1027
DR2497
CAC0505
CAC1251
CAC2126
Cgl0044
Cgl2109
Rv0017c
Rv2154c
MT0020
MT2213
ML0019
ML0913
L107499
L115706
L62179
SPy0609
SP0803
SP1067
SA0962
SA1888
lin0441
lin1059
lin2521
lin2522
lin2834
lin2835
BS_spoVE
BS_ylaO
BS_ywcF
BH2566
BH3275
BH3276
BH3360
slr1267
all0154
alr0653
ftsW
mrdB
ZftsW
ZmrdB
ECs0093
ECs0672
YPO0554
YPO2603
STM0127
STM0639
BU217
VC0949
VC2402
PA4002
PA4413
HI0031
HI1137
PM0141
PM1925
XF0796
XF1313
NMB0421
NMA2063
RSc0063
RSc2845
HP0743
HP1560
jhp0680
jhp1468
Cj1038
Cj1282
AGc3801
SMc01865
BMEI0578
mll1555
CC1547
CC2552
RP280
RP411
RC0376
RC0561
CT726
CT760
CPn0867
CPn0903
TP0387
TP0501
BB0302
BB0719
CLUSTER 2
CC3235

>COG0773 (Putative duplication confidence score 1.000)
CLUSTER 1
aq_1360
TM0231
FN1456
DR0627
CAC3225
Cgl2107
Rv2152c
MT2211
ML0915
L101678
SPy0345
SP1521
SA1561
lin1646
BS_murC
BH3248
slr1423
alr5065
murC
ZmurC
ECs0095
YPO0556
STM0129
BU215
VC2400
PA4411
HI1139
PM0143
XF0798
NMB0423
NMA2061
RSc2843
HP0623
jhp0567
Cj1054c
AGc3796
SMc01867
BMEI0580
mll1553
CC2546
RP247
RC0331
CT762_1
CPn0905_1
TP0341
BB0817
CLUSTER 2
mpl
ZyjfG
ECs5210
YPO3519
STM4416
VC2542
PA4020
HI0121
PM0929
XF0276
NMB1145
NMB1183
NMA1356
RSc2782

>COG0775 (Putative duplication confidence score 0.867)
CLUSTER 1
MA3492
MA3560_2
TM1129
FN1015
DR1451
DR1664
CAC2117
Cgl2742
Rv0091
Rv2293c
MT0100
MT2350
L132777
SPy0447
SP0991
SA1427
lin1529
BS_yrrU
BH1279
BH2690
BH3238
pfs
Zpfs
ECs0163
YPO3384
STM0207
BU210
VC2379
HI1216
PM0194
NMB0767
NMA0978
RSc3374
HP0089
jhp0082
Cj0117
AGc482
SMc00395
BMEII0888
mlr6947
CC2266
CPn0232
TP0170
BB0375
BB0588
BBE07
BBI06
UU470
MYPU_3360
CLUSTER 2
Cgl0095
amn
Zamn
ECs2779
YPO2288
STM2009
PA3970
RSp0214
AGc1849
SMc02386
BMEI1318
mll7714
CC0264
CT751
CPn0894

>COG0777 (Putative duplication confidence score 1.000)
CLUSTER 1
aq_445
FN0408
DR1215
CAC3569
Cgl0808_1
Rv0904c_1
MT0927_1
L0180
SPy1744
SP0426
SA1523
lin1608
BS_yttI
BH3166
sll0336
all2364
accD
ZaccD
ECs3200
YPO2768
STM2366
VC1000
PA3112
HI1260
PM0636
XF1467
NMB0679
NMA0880
RSc1980
HP0950
jhp0884
Cj0127c
AGc32
SMc02764
BMEI2020
mlr5075
CC3542
CT293
CPn0058
CLUSTER 2
PA0211

>COG0782 (Putative duplication confidence score 1.000)
CLUSTER 1
TM1706
DR1162
DR1970
DR2375
CAC1965
CAC2430
CAC3198
Cgl0961
Rv1080c
Rv3788
MT1111
MT3896
ML2393
L0140
SPy0349
SP1517
SA1438
lin1531
BS_greA
BH1276
greA
greBm
rnk
ZgreA
ZgreB
Zrnk
ECs0649
ECs4060
ECs4248
YPO0135
YPO3505
YPO3695
STM0616
STM3299
STM3503
BU384
VC0634
VC2715
VCA0607
PA2859
PA4755
PA5274
HI0569
HI1331
PM0715
PM1450
XF1108
NMB0689
NMB1430
NMA0891
NMA1643
RSc1522
RSc2152
RSc2636
HP0866
jhp0800
Cj0287c
AGc3965
AGl2534
SMa0149
SMa0229
SMa0232
SMc00347
SMc01218
BMEI0508
BMEI1377
BMEII0657
mll2568
mll3994
mlr7618
CC2202
CC2848
RP861
RC1332
CT636_2
CPn0741_2
TP0019
BB0132_2
UU304
MYPU_5530
MPN401
MG282
CLUSTER 2
mll3993

>COG0786 (Putative duplication confidence score 0.500)
CLUSTER 1
FN0205
FN0793
FN1801
SA2135
slr1145
gltS
ZgltS
ECs4529
YPO0035
STM3746
VCA0041
PA3176
HI1530
NMB0085
NMA0183
HP1506
jhp1399
CLUSTER 2
Cgl2722
slr0625

>COG0804 (Putative duplication confidence score 0.500)
CLUSTER 1
SPAC1952.11c_3
DRA0318
Cgl0086
Rv1850
MT1898
SA2084
BS_ureC
BH0254
sll1750
alr3670
ZureC
ZureC.2
ECs1324
PA4868
HI0539
RSc2032
HP0072
jhp0067
AGc4357
SMc01837
BMEI1652
mll4940
UU432
CLUSTER 2
YPO2667
BMEI0647

>COG0811 (Putative duplication confidence score 0.500)
CLUSTER 1
MA0344
MA4426
MA4641
MTH671
MK0066
PA1924
CLUSTER 2
MTH1022
aq_1757
aq_1988
FN1312
FN1834
DR0456
sll0477
sll1404
slr0677
all5047
alr0643
alr4587
exbB
tolQ
ZexbB
ZtolQ
ECs0772
ECs3890
YPO0682
YPO1121
STM0745
STM3159
VC1546
VC1547_2
VC1839
VCA0911
PA0198
PA0693_2
PA0969
PA2983
HI0253
HI0385
PM0970
PM1186
XF0010
XF1079
XF1900
NMB1729
NMA1984
RSc0732
RSc1964
RSc2528
HP1130
HP1339
HP1445
jhp1058
jhp1258
jhp1338
Cj0109
Cj0179
Cj1628
AGc264
AGl2236
SMc02085
SMc03958
BMEI0336
BMEI0365
mll3891
mll4168
CC2336
CC3233
RP309
RC0422
CT596
CPn0785

>COG0814 (Putative duplication confidence score 0.727)
CLUSTER 1
YBL089w
YEL064c
YER119c
YIL088c
YJR001w
YKL146w
YNL101w
SPAC3H1.09c
SPBC1685.07c
ECU04g1190
ECU05g0160
ECU05g0580
ECU09g1190
ECU11g1740
Cgl0474
mtr
tnaB
tyrP
Zmtr
ZtnaB
ZtyrP
ECs2615
ECs4042
ECs4646
YPO1209
YPO1285
STM1937
STM3279
VCA0160
VCA0772
PA1916
PA3766
PA5434
HI0287
HI0477
HI0528
PM0732
PM0810
PM1192
PM1419
NMB2031
NMA0409
CT817
CT818
CPn0969
CPn0970
CLUSTER 2
sdaC
tdcC
yhaO
yhjV
yqeG
Z4165
ZsdaC
ZtdcC
ZyhaO
ZyhjV
ECs3656
ECs3702
ECs3991
ECs3996
ECs4419
YPO0277
YPO1321
STM2970
STM3022
STM3239
STM3243
STM3625
VC1301
VC1658
HI0289
PM0037
HP0133
jhp0121
Cj1625c

>COG0820 (Putative duplication confidence score 1.000)
CLUSTER 1
aq_1528
aq_416
TM1715
FN0526
DR0936
CAC1726
Cgl1973
Rv2879c
Rv2880c
MT2947
L184159
SPy1533
SP0768
SA1061
lin0484
BS_yloN
BH2506
sll0098
all0355
yfgB
ZyfgB
ECs3379
YPO2882
STM2525
BU286
VC0757
PA1839
PA3806
HI0365
PM2007
XF0459
NMB1308
NMA1522
RSc1212
HP1428
jhp1325
Cj1713
AGc4846
SMc03831
BMEI1867
mlr4359
CC0134
TP0068
UU214
CLUSTER 2
TM0136
CAC1190

>COG0826 (Putative duplication confidence score 1.000)
CLUSTER 1
MA0538
MA1709
MA4661
MTH1763
MTH645
MJ0090
MJ1657
MK0019
MK0904
MK0906
SSO1759
SSO2015
aq_1015
FN1826
FN1931
DR2130
CAC1687
CAC2341
CAC2974
L52207
L54059
SPy0590
SPy0591
SP0801
SP1427
SP1429
SA1440
SA1441
lin0959
lin0960
BS_yrrN
BS_yrrO
BH1273
BH1274
all1741
ydcP
yegQ
yhbU
ZydcP
ZyegQ
ZyhbU
ECs2039
ECs2889
ECs4039
YPO2855
YPO3479
STM1604
STM2136
STM3274
VC0652
VC0717
PA3913
PA5440
HI0419
PM0233
NMB1664
NMA1923
RSp0970
HP0169
jhp0155
Cj0701
AGl935
SMa1291
BMEII0959
CLUSTER 2
yhbV
ZyhbV
ECs4040
YPO3480
STM3275
VC0651
PA3912
RSp0969
AGl934
SMa1292
BMEII0960

>COG0833 (Putative duplication confidence score 1.000)
CLUSTER 1
YBR068c
YBR069c
YBR132c
YCL025c
YDR046c
YDR508c
YEL063c
YFL055w
YGR191w
YKR039w
YLL061w
YNL268w
YNL270c
YOL020w
YOR348c
YPL265w
YPL274w
SPAC1039.09
SPAC869.10c
SPAC869.11
SPAP7G5.06
SPBC1652.02
SPBC19F8.06c
SPBC359.01
SPBC359.03c
SPBPB2B2.01
SPCC777.04
SPCC965.11c
SPCPB1C11.02
CAC3164
CAC3347
L169610
L59950
SA1169
SA1505
lin0791
BS_hutM
BS_rocC
BS_rocE
BS_ybgF
lysP
ykfD
ZlysP
ECs3048
YPO1309
STM2200
STM2357
PA4628
PA4981
RSc1757
RSc1758
HP1017
jhp0406
CLUSTER 2
YDR160w

>COG0836 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1097_1
VNG2159Gm
MA3781_1
PH0925_1
PAB0818_1
aq_589_1
TM1033
DRA0032
CAC2968
CAC3058
CAC3072
sll1370
alr0188
cpsB_1
ZcpsB_1
ZmanC_1
ECs2836_1
ECs2854_1
YPO3099_1
STM2084_1
STM2105_1
VC0241_1
PA2232_1
PA3551_1
PA5452_1
XF0259_1
HP0043_1
jhp0037_1
AGl2939_1
SMb21082_1
BMEI1395_1
BMEII0900_1
mlr5802_1
mlr7607_1
CC3618
RC1039_2
CLUSTER 2
RC1040

>COG0841 (Putative duplication confidence score 1.000)
CLUSTER 1
MA0141
aq_786
TM0372
FN0474
FN0515
FN1275
DR0740
CAC0370
SA2056
BS_yerP
BH3816
sll0142
slr0369
slr0454
slr2131
all3143
alr1656
alr4267
alr5294
acrB
acrD
acrF
yegN
yegO
yhiV
Z2507
Z2508
ZacrB
ZacrD
ZacrF.1
ZacrF.2
ZyegN
ZyegO
ZyhiV
ECs0515
ECs1864
ECs2883
ECs2884
ECs3332
ECs4138
ECs4139
ECs4394
YPO0421
YPO1001
YPO2848
YPO2849
YPO3043
YPO3133
YPO3482
STM0351
STM0475
STM2127
STM2128
STM2481
STM3391
VC0164
VC0629
VC0914
VC1673
VC1757
PA0158
PA0426
PA1436
PA2018
PA2494
PA2526
PA2527
PA3522
PA3676
PA4207
PA4375
PA4598
HI0895
PM1132
XF0243
XF2083
XF2094
XF2385
XF2386
NMB1715
NMA1969
RSc0010
RSc1654
RSc3205
RSp0312
RSp0670_2
RSp0818
RSp1113
RSp1198
RSp1199
RSp1458
RSp1597
HP0607
jhp0554
Cj0366c
Cj1033
AGc3721
AGc4340
AGc4508
AGc4621
AGl1281
AGl2075
AGl3088
AGl3217
AGl494
AGpA548
SMa0875
SMa1662
SMa1884
SMb20345
SMb21498
SMc01095
SMc01457
SMc01829
SMc02867
SMc03971
BMEI0893
BMEI1629
BMEI1645
BMEII0382
BMEII0473
BMEII0915
BMEII0916
mll1426
mll3832
mll5518
mll5779
mll6730
mll7357
mlr2404
mlr3285
mlr3649
mlr7298
CC0807
CC1204
CC1788
CC3120
CC3197
RP170
RC0211
RC0564
RC0565
RC0566
RC0567
RC0568
RC0569
BB0140
CLUSTER 2
aq_695
VCA0638

>COG0843 (Putative duplication confidence score 1.000)
CLUSTER 1
VNG0657G
PAE1337_1
SSO2973_1
APE0793_1
Q0045
Q0065
Q0070
aq_2191
DR2620_1
Cgl2472
Rv3043c
MT3128
ML1728
SA0912
lin0014
BS_ctaD
BS_qoxB
BH2065
BH2614
slr1137
slr2082
alr0951
alr2515
alr2732
cyoB
ZcyoB
ECs0485
YPO3165
STM0442
BU471
PA0106
PA1318
XF1389
RSc0363
RSc1859
RSc2916
RSp1565
AGc1399
AGc227
SMb21370
SMb21488
SMc00010
SMc01983
BMEI1465
BMEI1900
mll9630
mlr1041
mlr6847
mlr7491
CC1772
CC3406
RP405
RC0553
CLUSTER 2
VNG2193Gm
PAE1357
SSO0044
SSO2657
APE1623
aq_2192
BH0739

>COG0849 (Putative duplication confidence score 1.000)
CLUSTER 1
MK0451
aq_523
TM0835
FN1452
DR0630
CAC1692
L0207
SPy1521
SP1667
SA1028
lin2139
BS_ftsA
BH2559
ftsA
ZftsA
ECs0098
YPO0559
STM0132
BU213
VC2398
PA4408
HI1142
PM0146
XF0801
NMB0426
NMA2058
RSc2840
HP0978
jhp0912
Cj0695
AGc3785
SMc01873
BMEI0584
mll1549
CC2541
RP251
RC0335
TP0389
BB0300
CLUSTER 2
TM1277
CAC1013
BH3243

>COG0861 (Putative duplication confidence score 0.588)
CLUSTER 1
DR1187
DRB0131
CAC1039
CAC1415
SA0878
lin0990
lin0991
BS_yceF
BS_yjbE
BS_ykoY
BH2553
BH2860
sll1022
all3403
yegH_1
ygdQ
yoaE_1
Z4150
ZyegH_1
ZyoaE_1
ECs2525_1
ECs2868_1
ECs3689
YPO1527_1
YPO1759_1
STM1828_1
STM2119_1
STM3006
BU323_1
PA1170
PA1331_1
PA5250
PA5469
HI0056
PM1066
NMB1485_1
NMA1694_1
RSc0556
RSc0949
RSp1172_1
HP1343
jhp1262
Cj0186c
AGc3584
AGl1024_1
AGl786
SMc03171
SMc04175
BMEI0317
BMEI0671_1
mll3952
mlr0496
CC0347
CC1237
CLUSTER 2
Cgl1921
Rv2723
MT2795
ygjT
ZterC
ZterC.2
ZygjT
ECs1354
ECs3970
YPO0297
STM3224
VCA0546
PA2549
XF0406
NMB0012
NMA0259
AGc3415
CC3682
RP786
RC1219

>COG1001 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0240
MA2310
MTH866
MJ1459
MK0829
DRA0270
CAC0887
lin1853
BS_adeC
BH0640
yicP
ZyicP
ECs4602
AGc4165
AGl883
SMa1715
SMa1718
SMb21278
SMc01533
BMEII0627
mlr0157
BBH33
BBK17
CLUSTER 2
BS_yerA
BH0637

>COG1009 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1826
VNG0646G
MA1504
MA4572_1
Ta0961
TVN1106
PAB1391
PAE1568
SSO0328_2
APE1411
aq_1320
aq_1379
aq_866
DR0880_1
DR1494
Cgl0270_1
Cgl2672_1
Rv3156
MT3244
SA0411
SA0578_1
SA0813_1
lin2477_1
BS_ndhF
BS_shaA_1
BH1319_1
sll0026
sll1732
slr0844
alr0869
alr3956
alr4156
hyfD
nuoL
ZhyfD
ZnuoL
ECs3162
ECs3346
YPO2545
STM2318
BU164
VC1581
VCA0157_1
PA1054_1
PA2647
XF0316
NMB0257
NMA0002
RSc2051
HP1271
jhp1192
Cj1568c
AGc1658_1
AGc2360
AGc903_1
SMc00051_1
SMc01925
SMc03179_1
BMEI1147
BMEII0770_1
mll1355
CC1939
RP792
RC1226
CLUSTER 2
TVN1107

>COG1012 (Putative duplication confidence score 0.923)
CLUSTER 1
VNG0771G
VNG0808G
VNG0937G
VNG2513G
MA0705
MA1355
MA2860
MA4079
MTH978
MJ1411
MK1108
Ta0220
Ta0439
Ta0603
Ta0809
TVN0397
TVN0653
TVN1021
TVN1054
TVN1283
TVN1374
PAE2480
SSO1218
SSO1629
SSO1842
SSO3117
SSO3194
APE0163
APE0807
APE1786
YBR006w
YER073w
YHR037w
YHR039c
YMR110c
YMR169c
YMR170c
YOR374w
YPL061w
SPAC1002.12c
SPAC139.05
SPAC922.07c
SPAC9E9.09c
SPBC21C3.15c
SPBC24C6.04
SPCC550.10
aq_186
FN0454
DR0813
DR2381_1
DRA0003
DRA0030
DRA0126
DRA0220
DRA0343
DRA0348
CAC3657
Cgl0050
Cgl0099_2
Cgl0160
Cgl0447
Cgl0473
Cgl0530
Cgl0532
Cgl2416
Cgl2615
Cgl2656
Cgl2736
Rv0147
Rv0223c
Rv0234c
Rv0458
Rv0753c
Rv0768
Rv1187
Rv1731
Rv2858c
Rv3293
MT0155
MT0233
MT0245
MT0474
MT0777
MT0792
MT1224
MT1772
MT2926
MT3392
ML2573
ML2639
SPy1067
SPy1371
SP1119
SA0162
SA1736
SA1924
SA2341
SA2406
lin0401
lin0913
BS_aldX
BS_aldY
BS_dhaS
BS_gbsA
BS_iolA
BS_rocA
BS_ycbD
BS_ycgN
BS_ycnH
BS_yfmT
BS_ywdH
BH0203
BH0539
BH0681
BH0865
BH0995
BH1005
BH1738
BH2010
BH2237
BH2312
BH2737
BH3316
BH3940
sll1561_2
slr0091
slr0370
all3556
all5022
alr0540_2
alr3672
alr3771
aldA
aldB
aldH
astD
betB
feaB
gabD
maoC_1
ydcW
yneI
Z2275
Z2778
ZaldA
ZaldB
ZaldH
ZbetB
ZgabD
ZyneI
ECs0358
ECs1877
ECs2021
ECs2048
ECs2132
ECs2452
ECs3522
ECs4464
YPO1166
YPO1290
YPO1763
YPO1964
YPO2577
STM1102
STM1305
STM1524
STM1597
STM2791
STM3129
STM3680
STM4421
STM4519
VC0819
VC1745
VC1819
VC2616
VCA1067
PA0130
PA0219
PA0265
PA0366
PA0747
PA0898
PA1027
PA1253
PA1984
PA2125
PA2217
PA2323
PA3504
PA3570
PA4022
PA4073
PA4123
PA4189
PA4899
PA5312
PA5373
PM1530
PM1536
NMB1353
NMB1488
NMB1968
NMA0480
NMA1565
NMA1696
RSc0028
RSc0161
RSc1456
RSc2110
RSc2350
RSc2536
RSc3128
RSp0226
RSp0229
RSp0650
RSp0827
RSp0890
RSp1055
RSp1591
RSp1611
HP0056_2
jhp0048_2
Cj0489
Cj0490
Cj1503c_2
AGc1515
AGc351
AGc3880
AGc4041
AGl1010GM
AGl1228
AGl1241
AGl1402
AGl1790
AGl1806
AGl241
AGl2660
AGl2838
AGl2842
AGl3116
AGl75
AGpA197
AGpA283
AGpA320
SMa0050
SMa0052
SMa0220
SMa0260
SMa0796
SMa0805
SMa1415
SMa1731
SMa1844
SMa1848
SMa2213
SMb20262
SMb20378
SMb20424
SMb20891
SMb21185
SMb21301
SMb21539
SMb21635_1
SMc00094
SMc00781
SMc01588
SMc01656
SMc01971
SMc02689
SMc02780
SMc04385
SMc04397
BMEI0024
BMEI0219
BMEI0386
BMEI1382
BMEI1559
BMEI1560
BMEI1740
BMEI1747
BMEII0124
BMEII0125
BMEII0135
BMEII0140
BMEII0141
BMEII0142
BMEII0225
BMEII0241
BMEII0242
BMEII0282
BMEII0388
BMEII0608
BMEII0869
mll1015
mll1168
mll2219
mll2319
mll2867
mll3072
mll3987
mll4783
mll5719
mll5809
mll6142
mll6153
mll6639
mll7043
mll7045
mll7128
mll7197
mll7608
mlr3049
mlr4051
mlr4198
mlr5236
mlr5385
mlr6098
mlr6969
msl6152
msl8688
CC0419
CC0582
CC0822
CC1216
CC1302
CC1607
CC1849
CC2274
CC2397
CC2402
CC2791
CC3140
CC3141
CC3580
RC0621
UU362
CLUSTER 2
FN0084
CAP0035_1
CAP0162_1
L13145_1
SP2026_1
SA0143_1
lin1129
lin1143
lin1675_1
adhE_1
eutE
ZadhE_1
ZeutE
ECs1741_1
ECs3317
YPO2180_1
STM1749_1
STM2051
STM2463
VC2033_1
PM1453_1

>COG1015 (Putative duplication confidence score 1.000)
CLUSTER 1
TM0167
DR2135
CAC2065
L154925
SPy0890
SP0829
SA0134
lin2068
BS_drm
BH1530
deoB
ZdeoB
ECs5342
YPO0439
STM4569
BU542
VC2348
HP1179
jhp1105
AGc219
SMc04119
mll5587
MYPU_2770
CLUSTER 2
BH0592
yhfW

>COG1018 (Putative duplication confidence score 0.812)
CLUSTER 1
VNG0475C
YGR234w_2
SPAC869.02c_2
FN0100
DRA0243_2
Cgl2333
Cgl2778_2
Rv2776c
Rv3230c
Rv3554_2
Rv3571
MT2846
MT3327
MT3658_2
MT3676
SA0231_2
BS_hmp_2
BH1058_2
hmp_2
paaE
ybjV
yeaX
Z1106
ZhmpA_2
ZyeaX
ECs0958
ECs2512
ECs3418_2
YPO1359
YPO2492
YPO2908_2
STM0936
STM2556_2
VCA0183_2
VCA0924_2
PA2664_2
PA3498
PA4889
PA4905
PA5411
XF0053_2
RSc3398_2
RSp0063
RSp0223
RSp0608
AGc1321
SMa0752
SMa1191_2
SMa1500_2
SMa1735
SMa2117_2
SMb21636
SMc00981
SMc04151
BMEI0548
mll5100
mll6619_2
mlr7322
CC2394
CLUSTER 2
fpr
Zfpr
ECs4849
YPO0088
STM4084
BU581
PA3397
PA4615
XF1889
NMB1044
NMB1450
NMA1442
NMA1664
RSc1305
AGc2692
SMc02122
BMEI1591
mll4785
CC3208

>COG1024 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0017_2
AF0285_2
AF0435
AF0685
AF0963
AF1122_2
AF1641
AF2273_2
AF2429
VNG0428G
VNG1313G_2
VNG2032Gm
Ta0061
Ta0121
Ta0291_2
Ta0440
Ta1232
TVN0017
TVN0198
TVN0363
TVN0915
TVN1310_2
PAE1383_2
PAE1650
PAE2479
SSO0050
SSO0654
SSO1311
SSO2017
SSO2514_2
SSO2535
SSO2623
SSO2624
APE0056
APE0591
APE1484_2
YDR036c_1
YLR284c
YOR180c
SPBC2D10.09
aq_1156_2
FN0271
FN1020
DR0114
DR0184
DR1151
DR1487_1
DR2477_2
DR2510
CAC2012
CAC2016
CAC2712
Cgl0895
Rv0222
Rv0456c
Rv0632c
Rv0673
Rv0675
Rv0860_1
Rv0905
Rv0971c
Rv1070c
Rv1071c
Rv1136
Rv1141c
Rv1142c
Rv1472
Rv1935c
Rv2486
Rv2679
Rv2831
Rv3039c
Rv3373
Rv3374
Rv3516
Rv3550
Rv3774
MT0232
MT0472
MT0660
MT0702
MT0704
MT0883_1
MT0928
MT0999.1
MT1100
MT1101
MT1169.1
MT1174
MT1175
MT1518
MT1985
MT2560
MT2753
MT2897
MT3124
MT3617
MT3654
MT3883
ML0120
ML1241
ML1724
ML2118
ML2161_1
ML2401
ML2402
ML2498
SPy1758
SP0415
SA0224_2
BS_pksH
BS_pksI
BS_yhaR
BS_yngF
BS_ysiB
BS_yusL_2
BH0201
BH0202
BH0207
BH1135
BH1849
BH1996
BH2582
BH3101
BH3488_2
BH3824
alr4455
caiD
fadB_1
paaG
ydbS
yfcX_1
ygfG
Z3604_1
ZcaiD
ZfadB_1
ZygfG
ECs0039
ECs3224_1
ECs3789
ECs4774_1
YPO1458
YPO1459
YPO2747_1
YPO3766_1
STM0070
STM2388_1
STM3983_1
VC1047_1
VC2758_1
PA0744
PA0745
PA1021
PA1240
PA1629
PA1737_1
PA1748
PA1821
PA2013
PA2767
PA2841
PA2890
PA3014_1
PA3426
PA3591
PA4330
PA4980
XF1115
RSc0267
RSc0304
RSc0474_2
RSc0476
RSc1298
RSc1759_1
RSc2014
RSc2872
RSc2873
RSp0035
RSp0225
RSp0647
RSp0648
RSp0671
AGc1329
AGc2617
AGc562
AGc888_1
AGl2647
AGl2700
SMa1408
SMb20752
SMb21126
SMb21633
SMc00976
SMc01153
SMc01641
SMc01669
SMc01806
SMc02227_1
SMc04398
BMEI0022
BMEI0023
BMEI1196
BMEI1522
BMEI1927
BMEI1945
BMEII0214
BMEII0497_1
BMEII1021
mll1009
mll4199_1
mll5431
mll5584
mll6015
mll6870
mll8753
mlr1841
mlr3048
mlr5044
mlr5629_1
mlr5639
mlr6976
mlr7453
mlr8134
mlr8392
mlr8461
CC0006
CC0076_1
CC0353
CC0397
CC0947
CC1352
CC1723
CC1813_1
CC1814
CC1851
CC2169
CC2401
CC2575
CC3084
CC3189_1
RP560_2
RC0836
RC0837
RC0838
CLUSTER 2
BMEI1928

>COG1026 (Putative duplication confidence score 1.000)
CLUSTER 1
YDR430c
SPBC119.17
DR0617
CAC1654
CAC3006
CT824
CPn0981
TP0025
BB0228
CLUSTER 2
YOL098c
SPAC3H1.02c

>COG1028 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1207
VNG0364G
VNG0479G
VNG1341G
VNG1540G
VNG1748C
VNG2158G
VNG2632G
MA0107
MA0415
MA0479
MA1321
MA2686
MA2687
Ta0191
Ta0205
Ta0251
Ta0441
Ta0481_2
Ta0672
Ta0747
Ta0754
Ta0822
Ta0913
TVN0075
TVN0448_2
TVN0711
TVN1059
TVN1344
TVN1406
PH1809
PH1901
PAB0245
PAB1085
PAB2177
PAE0025
PAE0797
PAE1589
PAE2089
PAE2832
SSO0975
SSO1542
SSO2205
SSO2276
SSO2289
SSO2500
SSO2664
SSO3004
SSO3114
APE0912
APE1361
APE2503
YBR265w
YDL114w
YIL124w
YIR035c
YIR036c
YKL055c
YKL071w
YKL107w
YKR009c_1
YLR100w
YLR426w
YNL181w
YNL202w
YOR246c
YPL033c
SPAC1348.09
SPAC19A8.06
SPAC22A12.17c
SPAC23D3.11
SPAC3G9.02
SPAC4H3.08
SPAC8E11.10
SPAC922.06
SPAC977.08
SPBC16H5.14c
SPBC1709.07
SPBC30D10.05c
SPCC1450.15_1
SPCC162.03
SPCC1739.08c
SPCC24B10.20
SPCC663.06c
SPCC663.08c
SPCC663.09c
SPCC736.13
ECU10g0560
ECU11g1070
aq_1010
aq_1240
aq_1716
TM0019
TM0297
TM0325
TM0441
TM1169
TM1724
FN0216
FN0494
FN1687
DR0088
DR0113
DR0411
DR0730
DR0822
DR1467
DR1620
DR1700_2
DR1938
DR1943
DR2595
DRA0195
DRA0200
DRA0364
DRB0036
DRB0080
CAC0361
CAC1331
CAC1423
CAC1576
CAC2607
CAC2626
CAC3335
CAC3462
CAC3484
CAC3574
Cgl0190
Cgl0286
Cgl0321
Cgl0536
Cgl0699
Cgl1008
Cgl1009
Cgl1450
Cgl2083
Cgl2355
Cgl2390
Cgl2619
Cgl2992
Rv0068
Rv0148
Rv0242c
Rv0303
Rv0439c
Rv0547c
Rv0687
Rv0765c
Rv0769
Rv0851c
Rv0927c
Rv0945
Rv1050
Rv1144
Rv1245c
Rv1350
Rv1483
Rv1543
Rv1714
Rv1856c
Rv1865c
Rv1882c
Rv1928c
Rv1941
Rv2002
Rv2073c
Rv2129c
Rv2214c_2
Rv2263
Rv2750
Rv2766c
Rv2857c
Rv3057c
Rv3085
Rv3174
Rv3224
Rv3391_2
Rv3485c
Rv3502c
Rv3530c
Rv3548c
Rv3549c
Rv3559c
Rv3791
MT0074
MT0156
MT0256
MT0316
MT0455
MT0572
MT0715
MT0789
MT0793
MT0874
MT0954
MT0971
MT1080
MT1177
MT1283
MT1393
MT1530
MT1595
MT1753.1
MT1904
MT1914
MT1931
MT1991
MT2058
MT2133
MT2187
MT2270_2
MT2323
MT2820
MT2836
MT2925
MT3143
MT3170
MT3263
MT3321
MT3498_2
MT3589
MT3606
MT3633
MT3652
MT3653
MT3664
MT3899
ML0108
ML0315
ML0862_2
ML1094
ML1740
ML1807
ML2059
ML2565
L0185
L118271
L121175
L142816
L143350
L1530
L172964
L27694
L77482
SPy0440
SPy0636
SPy1640
SPy1749
SP0320
SP0421
SP0793
SA0122
SA1074
SA1123
SA2119
SA2260
SA2365
lin0362
lin0674
lin1431
lin1796
lin1921
lin1944
lin2278
lin2948
BS_dhbA
BS_fabG
BS_gdh
BS_kduD
BS_ycdF
BS_ydaD
BS_yfhR
BS_yhdF
BS_yhxC
BS_yhxD
BS_yjdA
BS_yjmF
BS_ykuF
BS_ykvO
BS_ymfI
BS_yoxD
BS_ytkK
BS_yueD
BS_yusR
BS_yusS
BS_yusZ
BS_yuxG_2
BS_yvaG
BS_yvrD
BS_ywfD
BS_ywfH
BS_yxbG
BS_yxjF
BS_yxnA
BH0316
BH0410
BH0506
BH0707
BH0800
BH0932
BH0938
BH1067
BH1510
BH1511
BH1550_2
BH1842
BH1843
BH2144
BH2167
BH2210
BH2391
BH2491
BH3182
BH3896
sll0330
sll1308
sll1704
sll1709
sll1825
slr0506
slr0886
slr1208_2
slr1994
slr2124
all0352
all0968
all1418
all1420
all1743
all1884
all2963
all3805
all3836
alr0430
alr1722
alr1894
alr2920
alr3252
alr3897
alr4456
alr5182
alr5286
alr5358
entA
fabG
hcaB
hdhA
idnO
kduD
srlD
ucpA
ybbO
yciK
ydgB
ygcW
ygfF
yjgI
yohE
yohF
yqhB
Z1533
Z1545
Z4865
Z5618
ZentA
ZfabG
ZhcaB
ZhdhA
ZkduD
ZsrlD
ZucpA
ZybbO
ZyciK
ZydgB
ZygcW
ZyghA
ZyjgI
ZyohF
ECs0556
ECs0635
ECs1275
ECs1285
ECs1471
ECs1843
ECs2312
ECs2327
ECs3024
ECs3297
ECs3407
ECs3561
ECs3630
ECs3699
ECs3887
ECs4340
ECs5003
ECs5226
YPO0839
YPO1287
YPO1452
YPO1456
YPO1460
YPO1565
YPO1599
YPO1724
YPO1811_2
YPO1993
YPO2215
YPO2539
YPO3081
YPO3199
YPO3351
STM0505
STM0598
STM1195
STM1675
STM1717
STM2171
STM2445
STM2835
STM3017
STM3157
STM4483
BU351
VC0774
VC0979
VC1059
VC1119
VC1591
VC1815
VC2021
VC2047
VCA0301
VCA0691
VCA1108
PA0117
PA0182
PA1023
PA1066
PA1330
PA1344
PA1379
PA1470
PA1537
PA1649
PA1827
PA1828
PA2003
PA2099
PA2142
PA2515
PA2554
PA2887
PA2892
PA2918
PA2967
PA3106
PA3128
PA3173
PA3277
PA3324_2
PA3330
PA3387
PA3427
PA3437
PA3507
PA3511
PA3883
PA3957
PA4079
PA4089
PA4098
PA4148
PA4162
PA4389
PA4786
PA5031
PA5150
PA5521
PA5524
HI0048
HI0155
PM1916
PM1968
XF0173
XF0319
XF0671
XF0913
XF1457
XF1726
XF1741
XF2082
XF2269
XF2716
NMB1127
NMB1165
NMB1702
NMB1921
NMA0533
NMA1336
RSc0156
RSc0171
RSc0215
RSc0275
RSc0284
RSc0435
RSc0536
RSc1029
RSc1052
RSc1568
RSc1572
RSc1633
RSc1730
RSc1763
RSc1769
RSc1838
RSc2147
RSc2186
RSc2351
RSc2504
RSc2534
RSc2597
RSc2753
RSc3138
RSc3209
RSc3331
RSp0033
RSp0230
RSp0305
RSp0359
RSp0446
RSp0589
RSp0697
RSp0947
RSp1059
RSp1123
HP0561
HP0890
HP1014
jhp0409
jhp0508
jhp0823
Cj0435
Cj0485
Cj0807
Cj1332
AGc1273
AGc1817
AGc1984
AGc2026
AGc2091
AGc2317
AGc2465
AGc2598
AGc2613
AGc3482
AGc3496
AGc3699
AGc4198
AGc4386
AGc4705
AGc4837
AGc5024
AGl1000
AGl1073
AGl117
AGl126
AGl1444
AGl1541
AGl2039
AGl2341
AGl2470
AGl2601
AGl2690_2
AGl28
AGl2975
AGl3035
AGl3292
AGl3337
AGl3471
AGl3508
AGl3556
AGl43
AGl509
AGl561
AGl595
AGl807
AGl91
AGpA178
AGpA214
AGpA252
AGpA258
AGpA293
AGpA300
AGpA355
AGpA398
AGpA417
AGpA564
AGpA642
AGpA687
AGpA801
AGpT126
AGpT46
SMa0059
SMa0074
SMa0187
SMa0326
SMa0329
SMa0335
SMa0339
SMa0389
SMa0513
SMa0719
SMa0854
SMa0959
SMa1367
SMa1398
SMa1452
SMa1629
SMa1757
SMa1779
SMa1967
SMa2019
SMa2165
SMb20073
SMb20076
SMb20210
SMb20409
SMb20456
SMb20492
SMb20493
SMb20511
SMb20662
SMb20692
SMb20693
SMb20750
SMb20871
SMb20974
SMb21010
SMb21111
SMb21159
SMb21348
SMb21383
SMb21474
SMc00136
SMc00165
SMc00260
SMc00264
SMc00268
SMc00372
SMc00553
SMc00572
SMc00603
SMc00733
SMc00778
SMc00880
SMc01157
SMc01175
SMc01500
SMc01571
SMc01635
SMc01698
SMc01955
SMc01991
SMc02034
SMc02037
SMc02041
SMc02271
SMc02322_2
SMc02336
SMc02339
SMc02486
SMc02522
SMc03878
SMc04391
BMEI0026
BMEI0032
BMEI0090
BMEI0268
BMEI0394
BMEI0395
BMEI0405
BMEI0406
BMEI0666
BMEI0861
BMEI1235
BMEI1250
BMEI1477
BMEI1489
BMEI1709
BMEI1832
BMEII0062
BMEII0063
BMEII0080
BMEII0283
BMEII0316
BMEII0514
BMEII0543
BMEII0816
BMEII0872
mll0352
mll0534
mll1017
mll1036
mll1830
mll1981
mll1982
mll2041
mll2118
mll2196
mll2271
mll2413
mll2989
mll2997
mll3081
mll3237
mll3372
mll3632
mll4054
mll4297
mll4781
mll4921
mll4989
mll5243
mll5433
mll5540
mll5766
mll6713
mll6717
mll6858
mll6862
mll7083
mll7191
mll7199
mll7289_2
mll7334
mll7371
mll7832
mll8174
mll8564
mlr0808
mlr1526
mlr1583
mlr1595
mlr1637
mlr1638
mlr1884
mlr1899
mlr2047
mlr2182
mlr2400
mlr2473
mlr2535
mlr2780
mlr2803
mlr2833
mlr3013
mlr3057
mlr3096
mlr3100
mlr3115
mlr3482
mlr3785
mlr3848
mlr4150
mlr4172
mlr4741
mlr5208
mlr5248
mlr5278
mlr5280
mlr5708_2
mlr5879
mlr5880
mlr6366
mlr6518
mlr6807
mlr6893
mlr7055
mlr7057
mlr7106
mlr7680
mlr7850
mlr7910
mlr9033
msl7784m
CC0094
CC0124
CC0246
CC0398
CC0400
CC0417
CC0511
CC0644
CC0821
CC1286
CC1492
CC1571
CC1656
CC1675
CC1803
CC1804
CC1808
CC1816
CC2093
CC2306
CC2655
CC2836
CC2861
CC2966
CC2979
CC3076
CC3175
CC3380
CC3384
CC3685
RP035
RP762
RC0054
RC1183
RC1363
RC1364
CT237
CPn0296
CLUSTER 2
sll1376
alr1909

>COG1029 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1650
MA2878
CLUSTER 2
AF1929
MA0309
MA0834
MA1241
MA4178
MTH1559
MTH919
MJ1194m
MK0259
MK1527

>COG1035 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1833
MA0978
MA3732
MA4220
MA4520_2
MTH1139_1
MTH1297
MTH280_1
MTH341
MJ0005_1
MJ0032
MJ0725
MJ0870_1
MJ1349
MK0322
MK0539
MK0799_1
MK0929
slr1923
all1601
SMb20252
CLUSTER 2
MTH193

>COG1036 (Putative duplication confidence score 0.750)
CLUSTER 1
AF1518
MA3741
MTH697
MJ0730
CLUSTER 2
MA0696
MTH1379
MJ0208
MK1484

>COG1044 (Putative duplication confidence score 1.000)
CLUSTER 1
aq_538
FN1909
slr0776
alr3074
lpxD
ZlpxD
ECs0181
YPO1054
STM0226
VC2250
PA3646
HI0915
PM1994
XF1045
NMB0180
NMA0087
RSc1414
HP0196
jhp0182
Cj0576
AGc2556
SMc02093
BMEI0831
mll0635
CC1913
RP009
RC0010
CT243
CPn0302
CLUSTER 2
XF0486
XF0918
XF1419
XF1646

>COG1053 (Putative duplication confidence score 0.700)
CLUSTER 1
AF0681
AF1463
AF1670
VNG1306G
MTH1502
MJ0033
MK0828
Ta1001
TVN0747
PAE0716
PAE2563
PAE2564
SSO2356
APE0950
YJL045w
YKL148c
SPAC1556.02c
aq_594
TM0427
DR0952
CAC0104
Cgl0367
Rv0248c
Rv1552
Rv3318
MT0262
MT1603
MT3419
ML0697
SA0995
BS_sdhA
BH3092
slr1233
all2970
frdA
sdhA
ZfrdA
ZsdhA
ECs0748
ECs5135
YPO0360
YPO1111
STM0734
STM4343
VC2089
VC2656
PA1583
PA2298
HI0835
PM0201
XF1072
NMB0950
NMA1145
RSc1994
HP0192
jhp0178
Cj0409
Cj0437
AGc4792
SMc02349
SMc02465
BMEI0161
mll4263
mlr9192
CC3527
RP128
RC0170
CT592
CPn0789
CLUSTER 2
YEL047c
YJR051w
SPAC17A2.05
FN0050_2
Cgl2564
Cgl2581
Rv1817
Rv3537
MT1865
MT3641
L137630
lin0374
STM0691
PA2243

>COG1058 (Putative duplication confidence score 1.000)
CLUSTER 1
AF2251
VNG0761G
Ta0487
TVN0585
PH0439
PAB1305
PAE0875
SSO0103
APE1980
YMR178w
TM0703_1
FN1929_1
DR2338_1
CAC3586_1
Rv1901_1
MT1952_1
ML2015_1
SPy2117_1
SP1941_1
SA1127
lin1434_1
BS_cinA_1
BH2385_1
slr0427_1
alr4808_1
yfaY
Z3507
ECs3137
YPO1210
STM2293
VC1252
NMB2128
NMA0304
RSc1256
AGc3176
SMc00944
BMEI0937
mll0144
CC2674
CLUSTER 2
STM2288

>COG1061 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0358
VNG1406Gm
VNG6130G
VNG7093
MA1603_2
MA2403
MA2897
Ta1016
TVN0573
PH0210
PH0450
PH1064_1
PAB0128
PAB1312
PAE1611
PAE2446
SSO0473
SSO0959
SSO1879
APE1073
YDR332w
YIL143c
SPAC17A5.06
SPBC3B8.12
ECU01g1060
FN0448
FN1974_2
DRA0131_1
CAC2824_2
Cgl0793
Cgl1126_2
Cgl1533_2
Rv0861c
MT0884
ML2157
SPy0669
SP0575
SA2276
SA2277_2
lin2589
all2951
all8075
alr4703
alr4909
alr7157
yejH_1
Z1129_2
Z1568_2
ZyejH_1
ECs1305_2
ECs3076_1
YPMT1.30
YPO1265_1
STM0900
STM2223_1
VC0812_2
VC1636_1
TP0380
CLUSTER 2
Cgl1868
Rv1179c_1
Rv2917
MT1217
MT2985
ML1624

>COG1066 (Putative duplication confidence score 1.000)
CLUSTER 1
aq_1773
CLUSTER 2
aq_552
TM0199
FN0157
DR1105
CAC3188
Cgl2612
Rv3585
MT3691
L0303
SPy0236
SA0484
lin0265
BS_sms
BH0104
slr0448
alr3823
sms
Zsms
ECs5347
YPO0443
STM4579
VC2343
PA4609
HI1597
PM0252
XF1378
NMB0782
NMA0992
RSc1372
HP0223
jhp0209
Cj1205c
AGc1991
SMc00556
BMEI1486
mll7835
CC1660
RP546
RC0810
CT298
CPn0053
TP1022

>COG1071 (Putative duplication confidence score 0.500)
CLUSTER 1
VNG1926G
VNG2217G
Ta1438
TVN0102
PAE2644
APE1677
DR0029
Rv2497c
MT2572
L0033
SA1348
lin1044
lin1409
BS_bfmBAA
BS_pdhA
BH0213
BH2655
BH2763
PA2247
PA3417
RSc1797
AGl2716
SMb20020_1
SMc03201
BMEII0748
mll4473
CT340_1
CPn0033_1
MYPU_7640
MPN393
MG274
CLUSTER 2
SSO1369
SSO1525
YER178w
SPAC26F1.03
ECU09g1040
Rv0843
MT0865
SPy1026
SP1164
BS_acoA
BH0776
BH1822
slr1934
alr2708
PA4150
AGc2636
SMc01030
BMEI0854
BMEII0061_1
BMEII0216_1
mll3629
mlr0383
CC1726
RP261
RC0347
CT245
CPn0304

>COG1072 (Putative duplication confidence score 0.778)
CLUSTER 1
TVN0137_2
Cgl0968
Rv1092c
MT1124
ML1954
L66222
SPy1233
SP0839
lin0923
BS_yqjS
BH2875
coaA
ZcoaA
ECs4901
YPO3758
STM4139
VC0320
HI0631
PM1747
AGc59
SMc02567
BMEI2039
mlr5019
CLUSTER 2
YFR007w
SPAC227.14
yggC
Z4273
ECs3804
AGc100
AGl262
SMc02167
BMEI1883
mll4957

>COG1073 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0675
AF1563
VNG1418C
MA0077
MA0419
MA2933
MA3920
PAB2176
APE1244_1
YNL320w
SPBC32H8.03
ECU09g0730
TM0336
FN0852
DR1053
DR1064
DR1915
DR1931
DR2248
DR2478
DR2551
DRB0023
CAC2725
CAC3022
CAC3407
CAC3665
Cgl1404_1
Rv2307c
MT2364
L123536
L15267
SPy1892
lin1094
lin2180
lin2363
BS_yitV
BS_yqkD
BS_ytaP
BH1308
BH2917
all8511
ycjY
yfhR
yjfP
Z0347
Z0370
Z2442
Z2444
Z2445
Z3802
ZyjfP
ECs0310
ECs0332
ECs1907
ECs1908
ECs1909
ECs3400
ECs5166
YPO2002
STM2547
STM4380
VCA0863_2
PA1680
PA2168
PA2218
PA3695
PA3829
PM1361
XF1745
XF1750
RSc0206
RSc1887_1
AGl2362
SMa0171
SMa1898_1
BMEI1884
mlr4383
mlr6657
CC0882
CT149
CT206
CPn0152
CPn0161
CLUSTER 2
yafA
ZyafA
ECs0266
YPO3224
STM0318
VC2276

>COG1076 (Putative duplication confidence score 0.600)
CLUSTER 1
YGL018c
SPAC144.08
ECU02g0690
sll0909
hscB
ZyfhE
ECs3393
YPO2893
YPO3641
STM0567
STM2540
BU604
VC0751
PA3811
HI0375
PM0321
NMB1383
NMA1598
RSc1023
RP201
RC0263
CLUSTER 2
djlA
ZyabH
ECs0060
YPO0496
STM0094
VC0447
PA0598
HI0271
PM1878
Cj0954c
AGc3834
SMc01853
BMEI0564
mll1571
mll4676
CC2134

>COG1079 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0889
VNG0897G
PH1711
PAB0305
PAE3118
PAE3411
APE0067
APE2586
TM0105
DR0251
CAC0705
L167877
SPy1225
SP0848
lin1428
BS_yufQ
alr5368
PA0138
RSc2175
AGc207
AGc3294
SMa1514
SMa2123
SMa2369
SMb20125
SMc00244
SMc04125
BMEII0087
BMEII0701
mll0502
mll4174
mlr3157
mlr6804
mlr7063
TP0302
TP0323
BB0679
UU013
MYPU_6170
MPN260
MG121
CLUSTER 2
BB0316

>COG1085 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1331
MA3680
PH0365
PAE1184
YBR018c
SPBPB2B2.10c
TM0896
TM1191
CAC2844
Cgl2030
Rv0619
L51063
galT
ZgalT
ECs0786
YPO1138
STM0775
VC1596
HI0820
PM1036
CLUSTER 2
Rv0618

>COG1094 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1805
VNG2227C
MA0893
MTH1006
MJ0443
MK0513
Ta0397
TVN1176
PH1566
PAB0406
PAE3473
SSO2373
APE0754
YOR145c
SPAC2C4.11c
ECU11g0750
CLUSTER 2
YCL059c
SPBC25B2.05
ECU04g0510

>COG1103 (Putative duplication confidence score 0.500)
CLUSTER 1
AF0028
MA0722
CLUSTER 2
AF0181
MTH1067
MJ1678
MK0229

>COG1104 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0186
AF0564
MA0808
MA2718
MA3264
YCL017c
SPBC21D10.11c
ECU11g1770
aq_1053
aq_739
TM1692
FN0058
DR0215
CAC2234
CAC2972
Cgl1043
Cgl1203
Rv3025c
MT3109
ML1708
L111126
L122222
SPy0816
SPy1122
SP0880
SP1094
SA1450
SA1538
lin1548
lin1635
lin2130
BS_nifS
BS_nifZ
BS_yrvO
BH1217
BH1260
BH3204
sll0704
slr0387
all1457
alr2505
alr3088
yfhO
ZyfhO
ECs3396
YPO2138
YPO2896
STM2543
BU602
VC0748
PA2062
PA3814
HI0378
PM0318
NMB1379
NMA1594
RSc1019
RSp0173
HP0220
jhp0206
Cj0240c
AGc3350
SMc00529
BMEI1043
mll5865
mlr0015
CC1865
RP486
RP487
RC0730
RC0731
CT258
CPn0396
TP0863
CLUSTER 2
CT721
CPn0862

>COG1107 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1337
VNG0779C
MA0917
MTH763
MJ1198
MK0157
PH0340
PAB1284
CLUSTER 2
VNG1511C

>COG1110 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1024
MJ1512_3
MK0289
PH0800_1
PH0800_3
PAB2423
PAE1108
SSO0420
SSO0963
APE1340
APE1376
aq_1159
aq_886
TM0173
CLUSTER 2
MJ1512_1
MK0049

>COG1112 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1388
AF1960
VNG1501G
VNG2167G
MA3490
MTH1634
MTH487
MJ0104
MK0070
Ta1398
PH0109_2
PH0909
PAB0067_2
PAB1561
SSO1456
YER176w
YHR164c
YKL017c
YLR430w
YMR080c
SPAC16C9.06c
SPAC6G9.10c
SPBC16D10.04c
SPBC29A10.10c
SPCC1739.03
SPCC737.07c
ECU05g1110
ECU09g1800
ECU10g1640
aq_2057
aq_791
TM0005
TM0618
TM1411_2
FN0949
FN1445
CAC3036
Rv1251c_2
MT1290_2
ML1098_2
SA0089
sll1582
yjhR
Z1202
Z1642
ECs1384
STM4489
PA2727_3
XF2409
HP0435
HP0447
RC1124
RC1125
RC1126
UU389
UU571
MYPU_1220
MPN153
MG140
CLUSTER 2
PA2728

>COG1113 (Putative duplication confidence score 1.000)
CLUSTER 1
CAC0727
CAC1472
Cgl0463
Cgl1083
Cgl1129
Rv0346c
Rv0522
Rv1704c
Rv2127
MT0361
MT0544
MT1744
MT2186
ML1304
ML1305
L160176
L161441
L18622
L73435
SPy1654
SA1519
SA2109
SA2226
SA2227
lin0780
BS_aapA
BS_gabP
BS_ybxG
BS_ycgH
BS_ydgF
BS_ytnA
BS_yvbW
BH2171
ansP
aroP
cycA
gabP
pheP
proY
yifK
ZansP
ZaroP
ZcycA
ZgabP
ZpheP
ZproY
ZyifK
ECs0116
ECs0452
ECs0614
ECs2057
ECs3524
ECs4729
ECs5186
YPO1743
YPO1859
YPO1937
YPO3201
YPO3421
YPO3854
YPO4015
STM0150
STM0400
STM0568
STM1584
STM2793
STM3930
STM4398
PA0129
PA0789
PA0866
PA2079
PA3000
PA5097
AGl2082
BMEII0038
CLUSTER 2
Cgl0998

>COG1117 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1359
VNG0452G
VNG2482G
MA0890
MTH1731
MJ1012
MK1687
PAB0700
PAE1393
SSO0488
APE0050
aq_1055
TM1261
DRA0160
CAC1708
Cgl2518
Rv0820
Rv0933
MT0842
MT0960
ML2189
L154481
L155408
SPy1241
SPy1242
SP1396
SP1397
SP2087
SA1218
lin2638
lin2639
BS_yqgJ
BS_yqgK
BH2991
sll0683
sll0684
slr1250
all0907
all0908
all4572
pstB
ZpstB
ECs4661
YPO2833
YPO4114
STM3854
VC0726
VCA0073
PA5366
HI1380
PM0433
XF2144
RSc1532
Cj0616
AGc743
SMc02142
BMEI1986
mll3719
CC0292
BB0218
UU200
MPN609
MG410
CLUSTER 2
BS_yjkB

>COG1118 (Putative duplication confidence score 1.000)
CLUSTER 1
Rv1859
MT1907
Z4271
ECs3803
STM3075
CLUSTER 2
Rv2397c
MT2468
BH3130
sll0739_2
slr1455
all0126
alr2433_2
cysA
ZcysA
ECs3293
YPO3012
STM2441
VC0541
PA0280
XF1347
NMB0879
NMA1097
RSc1347
RSp1145
HP0475
jhp0427
Cj0300c
AGc1506
AGl2655
SMa2067
SMb21130
BMEI1838
mlr1669
CC1598

>COG1120 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0430
AF1401
VNG1371Gm
VNG2552G
VNG2558G
MA0950
MA1132
MA1198
MA1233
MA2150
MA2776
MA3358
MA3453
MA3642
MA3919
MA3933
MA4532
MA4606
MJ0089
MJ0873
Ta1410
TVN1429
PH0791
PH1235
PAB0678
PAB1536
SSO0487
APE1055
TM0078
TM0191
FN0302
FN0307
FN0770
FN0817
FN0882
FN1968
DR2590
DRB0121
CAC0791
CAC1989
CAC2443
Cgl0038
Cgl0491
Cgl0646
Cgl0655
Cgl1590
Cgl2059
Cgl2784
SPy0386
SPy1793
SP1035
SA0602
lin2074
lin2286
lin2523
BS_fhuC
BS_yfmF
BS_yusV
BS_yvrA_1
BH1039
BH1081
BH1587_1
BH3292
BH3295
slr1318
all0389
all2584
alr3241
alr4033
fecE
fepC
fhuC
Z1964
Z4385
ZfepC
ZfhuC
ECs0155
ECs0627
ECs1697
ECs3916
YPO1312
YPO1345
YPO1533
YPO3392
STM0192
STM0590
STM0771
VC0201
VC0779
PA2912
PA4158
HI1272
HI1470
PM0128
PM1080
PM1147
PM1309
RSc2398
HP0888
jhp0821
Cj1616
AGl1656
AGl2292
AGl2857
AGl2867
AGpA452
SMa1741
SMb20058
SMb21429
BMEI0660
BMEII0537
mlr8227
CC1193
UU069
UU435
MPN416
MG290
CLUSTER 2
MA2778

>COG1122 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0731
AF1170
AF1841
VNG1631G
VNG2317G
MA0394
MA0870
MA1418
MA1747
MA3551
MA4020
MA4021
MA4341
MA4342
MTH133
MTH1704
MTH454
MJ1088
MJ1572
MK0182
PH0132
PH1815
PAB0249
PAB2260
PAE2532
SSO0167
SSO1893
SSO2030
APE2154b
APE2406
APE2408
TM0222
TM1663
FN2004
FN2005
DR2469
DRA0269
CAC0773
CAC1368
CAC3101
CAC3102
Cgl0519
Cgl1055
Cgl1914
Rv2326c
MT2388
ML0848
L123777
L75718
L76755
SPy1787
SPy2194
SPy2195
SP0483
SP0720
SP1438
SP2220
SP2221
SA0928
SA2020
SA2021
SA2476
lin1170
lin2749
lin2750
BS_ybaE
BS_ybxA
BS_ykoD
BH0164
BH0165
sll0385
sll1623
slr0354
all1547
all4546
alr3946
alr3949
Z4270
ECs3802
STM2020
STM3074
VC1525
HI1618
RSc2632
AGc1362
SMc00962
BMEI0635
BMEI0636
TP0227
UU538
UU539
MYPU_3860
MYPU_3870
MPN193
MPN194
MPN432
MPN433
MG179
MG180
MG303
MG304
CLUSTER 2
Cgl2770

>COG1126 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0680
MA0788
MA0789
PAE2001
APE1891
TM0591
FN0801
DR1648
CAC0112
CAC0378
CAC0879
CAC3327
CAC3618
Cgl1298
Cgl1905
L164012
L2385
L37916
SPy0276
SPy1275
SPy1316
SPy1506
SPy1657
SP0452
SP0610
SP0709
SP0824
SP1242
SP1460
SP1501
SA1674
SA2200
lin0841
lin1850
lin2353
lin2440
BS_glnQ
BS_hisP
BS_yckI
BS_yqiZ
BS_yxeO
BH0172
BH1463
slr1735
alr4167
glnQ
gltL
yecC
yhdZ
ZglnQ
ZgltL
ZyecC
ZyhdZ
ECs0691
ECs0887
ECs2655
ECs4144
YPO1848
YPO2514
YPO2612
YPO3254
STM0662
STM0828
STM1635
STM1951
VC0008
VC1359
VCA1037
PA1256
PA1339
PA4192
PA5074
HI1078
NMB0696
NMB0789
NMA0900
NMA1000
RSc0484
RSc2106
RSc2260
RSc3408
RSp0428
RSp0479
RSp0932
HP1171
jhp1098
Cj0469
Cj0902
Cj0922c
AGc2571
AGc2580
AGc2909
AGl1162
AGl1253
AGl257
AGl2810_2
AGl2925
AGl381
AGl402
AGl671
AGpA331
AGpA712
AGpA9_2
SMa0083
SMa0489
SMa0508
SMa2195
SMb20266
SMb20427
SMb21096
SMb21138
SMc02121
SMc03135
SMc03894
BMEI0108
BMEI0111
BMEI1208
BMEII0599
mll3858
mlr2206
mlr3801
mlr7132
mlr8154
mlr9616
CC1439
RP868
RC1341
CT130
CPn0191
CLUSTER 2
RSc1743

>COG1132 (Putative duplication confidence score 1.000)
CLUSTER 1
VNG0123G
MA2472
MA2473
MA2939
PH1735
PH1736
PAB2147
PAB2148
PAE1878
SSO3012
YDR135c
YGR281w
YHL035c
YKL209c
YKR103w
YKR104w
YLL015w
YLL048c
YLR188w
YPL270w
SPAC30.04c
SPAC3F10.11c
SPAC9E9.12c
SPBC2G5.09c
SPBC359.05
SPBC9B6.09c
SPCC663.03
ECU01g0200
ECU01g1410
ECU03g0240
ECU04g0480
ECU10g1230
ECU11g1200
aq_1563
TM0043
TM0287
TM0288
TM1256
TM1310
TM1319
TM1328
FN0598
FN0614
FN0615
FN1080
FN1435
FN1436
FN1820
DR0095
DR0096
DR0163
DR2051
DR2052
DR2379
DR2404
DRA0349
CAC0661
CAC1558
CAC1613
CAC2392
CAC2393
CAC2755
CAC2756
CAC3281
CAC3282
CAC3414
CAC3415
Cgl0236
Cgl0928
Cgl0929
Cgl0939
Cgl0940
Cgl1106
Cgl1122
Cgl1398
Cgl1399
Cgl1488
Cgl1489
Cgl2025
Cgl2026
Cgl2246
Rv0194_1
Rv0194_2
Rv1272c
Rv1273c
Rv1348_2
Rv1349
Rv1620c
MT0204
MT1310
MT1311
MT1390_2
MT1392
MT1656
ML1113
ML1114
L102979
L104789
L109162
L110899
L116532
L162870
L59135
L61006
L61680
SPy0229
SPy0230
SPy1084
SPy1148
SPy1149
SPy1790
SP0137
SP1342
SP1357
SP1358
SP1434
SP1435
SP1839
SP1840
SP1918
SP1919
SP2073
SP2075
SA0599
SA1683
SA2216
SA2217
lin0155
lin0156
lin0616
lin0617
lin0829
lin1098
lin1691
lin1692
lin2888
lin2894
lin2895
BS_yfiB
BS_yfiC
BS_ygaD
BS_yheH
BS_yheI
BS_yknU
BS_yknV
BS_yvcC
BS_ywjA
BH0713
BH0813
BH0814
BH0815
BH0941
BH1125
BH1126
BH1157
BH1158
BH2335
BH2336
BH3891
sll1276
sll1725
slr0615
slr1149
slr1488
slr1494
slr2019
all0640
all1294
all2146
all2622
all2623
all4730
all4731
all4732
all4955
all5193
alr0583
alr1554
alr1978
alr2835
alr4715
alr5199
asl1293
mdlA
mdlB
msbA
ZmdlA
ZmdlB
ZmsbA
ECs0502
ECs0503
ECs0997
YPO0770
YPO0771
YPO1395
YPO1735
YPO1913
YPO1914
YPO3144
YPO3145
STM0460
STM0461
STM0984
STM2774
BU479
BU480
VC0199
VC1499
VC1878
VCA0996
PA0860
PA1113
PA3228
PA4222
PA4223
PA4997
HI0060
HI0664
HI1051
PM0861
PM1301
PM1473
XF1081
XF2582
NMB0264
NMB1919
NMA0535
NMA2223
RSc1808
RSc1809
RSc2200
HP0600
HP1082
HP1206
jhp0343
jhp0547
jhp1129
Cj0803
Cj1130c
AGc3190
AGc4077
AGc4079
AGc4668
AGc4944
AGl2179
AGl309
AGl552
SMb20813
SMb20941
SMb21191
SMb21268
SMb21269
SMc00185
SMc00186
SMc02836
SMc03900
SMc03991
BMEI0323
BMEI0471
BMEI0472
BMEI0984
BMEI1742
BMEI1743
BMEII0250
mll0815
mll2714
mll2715
mll3934
mll5254
mll5362
mll7116
mll7118
mlr1948
mlr3255
mlr4641
mlr5867
mlr8326
CC0305
CC3274
CC3420
RP214
RP387
RP388
RP696
RC0286
RC0301
RC0534
RC1073
CT264
CPn0413
UU059
UU060
MYPU_0390
MYPU_0400
MYPU_0410
MYPU_7410
MYPU_7420
MPN018
MPN019
MG014
MG015
CLUSTER 2
PAE2301

>COG1134 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0041
AF0290
MA1177
aq_1094
CAC2328
Cgl0201
Rv3781
MT3890
ML0114
L137446_1
L4342
SPy0790
SA0593
lin1063
BS_tagH_1
BH3659
sll0575
slr0982
slr2108
ssr2802
all0916
alr4486
STM0723
VC0247
PA1386
PA5450
PM0781
XF2568
NMB0074
NMA0195
Cj1447c
SMb20832
BMEI1416
mll7564
CC0634
RP003
RC0003
CLUSTER 2
SA1688

>COG1136 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1018
AF1469
AF1819
VNG0002G
VNG0799C
MA0377
MA1120
MA1668
MA1752
MA2275
MA2488
MA2548
MA2840
MA3171
MA3582
MA3957
MA3960
MTH696
MJ0796
MJ1508
MK1654
PAE2286
PAE2699
PAE2785
SSO0688
SSO1034
SSO1078
APE1253
aq_297
aq_417
TM0194
TM0352
TM0705
FN0582
FN0827
FN1348
FN1352
DR0473
DR2192
DRA0280
DRB0049
CAC0066
CAC0164
CAC0226
CAC0245
CAC0319
CAC0373
CAC0453
CAC0526
CAC0822
CAC1518
CAC1535
CAC1998
CAC2256
CAC2732
CAC3560
CAC3585
CAC3616
Cgl0616
Cgl0833
Cgl1966
Cgl2501
Cgl2938
Rv0073_1
Rv0986
Rv2564_1
MT0079_1
MT1014
MT2640_1
L110431
L119891_1
L132038
L15262
L192122
L52030
L79717
L94760
SPy0773
SPy0837
SPy1257
SPy1912
SPy2031
SP0111
SP0600
SP0687
SP0786
SP0912
SP1341
SP1653
SP1957
SP1987
SA0192
SA0297
SA0616
SA0888
SA2149
SA2416
SA2492
SAP022
lin0233
lin0418
lin0746
lin0866
lin1186
lin1540
lin1859
lin2219
lin2471
lin2725
lin2914
BS_yclH
BS_yknY
BS_ytrE
BS_ytsC
BS_yvcR
BS_yvrO
BS_yxdL
BH0273
BH0281
BH0286
BH0599
BH0753
BH1756
BH2699
BH3122
BH3505
BH3673
BH3913
sll0484
slr0544
all0439
all0807
alr0447
alr1507
alr3649
alr3712
alr4282
alr4975
lolD
ybjZ_1
Z1552
ZybjZ_1
ZycfV
ECs0965_1
ECs1292
ECs1495
YPO1365_1
YPO1497
YPO1627
YPO1946
YPO3000_1
STM0942_1
STM1218
BU296
VC1568
VC1630
VC1883
VC2553
VCA0855
PA0073
PA2390_1
PA2987
PA4064
PA4594
HI1549
PM0448
PM0561
PM0996_1
PM1823
XF1077
NMB0549_1
NMB1234
NMA0729_1
NMA1402
RSc1118
RSp1464
HP0179
HP0748
jhp0167
jhp0685
Cj0607_1
Cj1180c
Cj1277c
Cj1663
AGc2377
AGc3334
AGpA191
AGpA247_1
AGpA663
SMa1120
SMb20370
SMc01376
SMc04351_1
BMEI0360_1
BMEI1138
mll1341
mlr1396
mlr4461
mlr4463
CC0932
CC1929
CC2091
RP700
RC1077
CT152
CPn0248
TP0581
TP0964
BB0080
BBJ26
UU118
MYPU_0640
MYPU_0660_1
MYPU_6250_1
MYPU_6260_1
MYPU_7730
MPN081
MPN683
MPN685
MG065
MG467
MG468.1
CLUSTER 2
MA1227
MA1273
MTH1673
MJ0121
MK0809
FN0130

>COG1142 (Putative duplication confidence score 0.500)
CLUSTER 1
AF0950
MA3283
MTH105_1
MTH1714
MTH1736
MTH1737
MJ0155
MJ0264
MJ0265
MK0084
MK0725
PH0893
PAB2084
TM0396
aegA_1
hycB
hydN
hyfA
ygfS
ygfT_1
yiaI
ZhycB
ZhydN
ZhyfA
ZyffG_1
ZygfS
ZygfT_1
ZyiaI
ECs3330_1
ECs3343
ECs3569
ECs3580
ECs3758
ECs3759_1
ECs4456
YPO0342_1
YPO0343
STM2479_1
STM2843
STM2852
STM3666
CLUSTER 2
PH1750
PAB0213
sll0031
alr2308

>COG1150 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1376
MA3127
MA4236
MTH1878
MJ0744
MJ0864
MK0573
SSO1127
aq_391
CLUSTER 2
SSO1134
aq_398

>COG1152 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1100
AF2397
MA1016
MA3860
MA4399
MTH1708
MJ0153
MK0717
MK0719
CLUSTER 2
MJ0152_1

>COG1154 (Putative duplication confidence score 0.667)
CLUSTER 1
aq_881
TM1770
FN1208
DR1475
CAC2077
Cgl1856
Rv2682c
Rv3379c
MT2756
ML1038
lin1402
BS_yqiE
BH2779
sll1945
alr0599
dxs
Zdxs
ECs0474
YPO3177
STM0422
BU464
VC0889
PA4044
HI1439
PM0532
XF2249
NMB1867
NMA0589
RSc2221
HP0354
jhp0328
Cj0321
AGc1351
SMc00972
BMEI1498
mlr7474
CC2068
CT331
CPn1060
TP0824
CLUSTER 2
FN1464
CAP0106
L108911
L123365

>COG1157 (Putative duplication confidence score 1.000)
CLUSTER 1
aq_1595
TM0218
CAC2159
lin0724
BS_fliI
BH2455
fliI
Z4194
ZescN
ZfliI
ECs2680
ECs3730
ECs4568
YPCD1.40
YPO0267
YPO0717
YPO1827
STM1415
STM1972
STM2894
BU076
VC2130
PA1104
PA1697
RSp0393
RSp0870
HP1420
jhp1315
Cj0195
AGc980
SMc03025
BMEII1105
mlr2909
mlr6342
CC3040
CT669
CPn0707
TP0402
BB0288
CLUSTER 2
CT717
CPn0858

>COG1160 (Putative duplication confidence score 1.000)
CLUSTER 1
aq_1919
TM1446
FN0170
DR2308
CAC1711
Cgl1394
Rv1713
MT1753
ML1372
L0156
SPy0341
SP1709
SA1307
lin2051
BS_yphC
BH1638
slr1974
alr0483
yfgK
Z3774
ECs3373
YPO2875
STM2519
BU607
VC0763
PA3799
HI0136
PM0105
XF0465
NMB0852
NMA1063
RSc1219
HP0834
jhp0773
Cj0386
AGc4180
SMb20995
BMEI1550
mlr7404
CC1654
RP677
RC1030
CT703
CPn0844
TP0689
BB0508
UU383
MYPU_0880
MPN475
MG329
CLUSTER 2
TM0445
CAC1651

>COG1171 (Putative duplication confidence score 1.000)
CLUSTER 1
VNG2100G
Ta0113
TVN0190
TVN1130
PAE2316
SSO0248
APE1498
YCL064c
YER086w
YKL218c
SPBC1677.03c
SPCC320.14
TM0356
FN1411
DR0567
Cgl0953
Cgl2076
Rv1559
MT1610
ML1209
L0081
SP0450
SA1271
SA1866
lin2098
BS_ilvA
BH1711
slr2072
all0262
alr4232
ilvA
tdcB
ZilvA
ZtdcB
ECs3997
ECs4706
YPO3896
YPO4089
STM3244
STM3905
VC0027
PA0331
PA0851
PA1326
PA2683
HI0738.1
PM1624
XF1819
NMB0878
NMA1096
RSc0449
RSc0948
RSp1516
Cj0828c
AGc2225
AGc4956
AGl246
SMa1872
SMb20432
SMc00936
BMEI0935
mll4597
mll7611
mlr0162
mlr3510
mlr7138
CC3105
CC3635
RP449
RC0628
CLUSTER 2
ygeX
ZygeX
ECs3744
STM1002
mlr7936

>COG1181 (Putative duplication confidence score 1.000)
CLUSTER 1
MA4352_2
aq_521
TM0259
FN1454
DR0362
CAC2895
Cgl1289
Rv2981c
MT3059
ML1678
L140690
SPy1421
SP1671
SA1887
lin0848
BS_ddlA
BH1621
slr1874
all0980
ddlA
ddlB
Z0477
ZddlB
ECs0096
ECs0431
YPO0557
STM0130
STM0380
VCA0572
PA4201
PA4410
HI1140
PM0144
XF0799
NMB0424
NMA2060
RSc2842
HP0738
jhp0675
Cj0798c
AGc3788
SMc01871
BMEI0582
BMEI0727
mll1551
mll1812
CC2543
RP249
RC0333
CT762_2
CPn0905_2
TP0670
BB0200
CLUSTER 2
CAC1540
lin2913_2
BH3653_1
BH3654_1
BH3655_1
slr2002_1
all3879_1
alr0573
alr1779
PA3460_2
PM1048_2
SMb20482_2

>COG1183 (Putative duplication confidence score 0.833)
CLUSTER 1
AF2044
VNG0784G
MA0116
MTH1027
MJ1212
MK0161
YER026c
SPCC1442.12
FN0991
CAC0676
CAC0798
Rv0436c
MT0452
ML0310
BS_pssA
BH1310
PA4693
XF0442
NMB1318
NMA1532
RSc2073
HP1071
jhp0354
Cj1114c
AGc1962
SMc00552
BMEI1490
mlr5886
mlr7822
RP242
RC0326
CT826
CPn0983
CLUSTER 2
PA3857
AGc3299
SMc00247
BMEII0695
mll0506
BB0249

>COG1186 (Putative duplication confidence score 0.929)
CLUSTER 1
YLR281c
aq_1840
TM1579
FN1341
DR0173
CAC2845
CAC3384
Cgl0778
Rv3105c
MT3188
ML0667
L0374
SPy0643
SA0709
lin2653
BS_prfB
BH3605
sll1865
all0273
prfB
prfH
ZprfB
ZprfH
ECs0263
ECs3763
YPO0889
STM0315
STM3041
BU436
VC0663
PA5470
HI1212
PM0190
XF1111
NMB2138
NMA0224
RSc1030
RSp0699
HP0171
jhp0157
Cj1455
AGc2479
SMc01333
BMEI1054
mlr0216
CC1874
RP274
RC0368
CT459
CPn0575a
TP0576
BB0074
CLUSTER 2
YOL114c
SPAC589.11
alr4696
yaeJ
ZyaeJ
ECs0193
YPO1066
STM0240
PA0868
AGc57
SMc02563
BMEI2038
mlr5097
CC1214

>COG1190 (Putative duplication confidence score 1.000)
CLUSTER 1
MA0760
PAE1840
SSO0090
YDR037w
YNL073w
SPBC17G9.03c
SPCC18.08
ECU04g0580
aq_1202
TM1705
FN0466
DR0372
CAC3197
Cgl2631
Rv1640c_2
Rv3598c
MT1678_2
MT3705
ML0233
ML1393_2
L0347
SPy0595
SP0713
SA0475
lin0260
BS_lysS
BH0098
slr1550
all4071
lysS
lysU
ZlysS
ZlysU
ECs3762
ECs5111
YPO0888
STM3040
BU437
VC0664
PA3700
HI1211
PM0189
XF1112
NMB1425
NMA1638
RSc1028
HP0182
jhp0170
Cj0401
AGl794
SMc03173
CT781
CPn0931
UU062
MYPU_3900
MYPU_4020
MPN277
MG136
CLUSTER 2
L129283_2

>COG1191 (Putative duplication confidence score 1.000)
CLUSTER 1
aq_1218
TM0902
CAC1226
CAC1689
CAC1695
CAC1696
CAC2143
CAC2306
Rv3286c
MT3385
SA1869
lin0894
BS_sigB
BS_sigD
BS_sigE
BS_sigF
BS_sigG
BS_spoIIIC
BS_spoIVCB
BH0529
BH1285
BH1538
BH2431
BH2554
BH2556
slr1564
all3853
alr0277
fliA
ZfliA
ECs2661
YPO0745
YPO1843
STM1956
VC2066
PA1455
RSp1390
HP1032
jhp0392
Cj0061c
CT061
CPn0362
TP0709
CLUSTER 2
CAC1770
BS_ykoZ

>COG1222 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1976
VNG0510G
VNG2000G
MA4123
MA4268
MTH728
MJ1176
MK0878
PH0201
PAB2233
SSO0271
APE2012
YDL007w
YDR394w
YGL048c
YKL145w
YOR259c
SPBC16C6.07c
SPBC23G7.12c
SPBC4.07c
SPCC1682.16
SPCC576.10c
ECU03g1330
ECU07g0190
ECU07g1640
ECU08g1970
ECU09g1840
ECU10g0130
CLUSTER 2
YOR117w
SPAC3A11.12c
ECU10g1420

>COG1227 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0756
MJ0608
YHR201c
SPAC2F3.11
ECU05g0460
TM0587_3
FN1824
DR2576
CAC2138
L62663
SPy0380
SP1534
SA1735
lin1486
BS_yybQ
VC1687
CLUSTER 2
TM0587_1

>COG1229 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1930
MA0833
MTH1557
MJ1169
MK1529
CLUSTER 2
MA0306
MA4175

>COG1239 (Putative duplication confidence score 0.500)
CLUSTER 1
AF1445
MK0192_1
DR2594
Cgl1033
Rv0958
MT0985
CLUSTER 2
VNG1565G_1
MA0877_1
MTH451_1
MTH556
MJ0911
Ta0576_1
TVN0630_1
Cgl1951
Rv2850c_1
MT2916_1
slr1030
slr1777_1
all0152
all0278_1
PA2942
RSp0625_1

>COG1241 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0517
VNG2181G
MA0681
MA3829
MA4403
MTH1770
MJ0363
MJ0961
MJ1489
MJECL13
MK0965
MK1120
Ta0799
TVN1032
PH0606_1
PH0606_3
PH0606_5
PAB2373_1
PAB2373_3
PAB2373_5
PAE0901
SSO0774
APE0188
YBL023c
YBR202w
YEL032w
YGL201c
YLR274w
YPR019w
SPAC1B2.05
SPAC3F10.01
SPBC211.04c
SPBC25D12.03c
SPBC4.04c
SPCC1682.02c
SPCC16A11.17
ECU02g1150
ECU04g0850
ECU05g0780
ECU06g0340
ECU07g0490
ECU08g0290
ECU09g1360
ECU11g0800
CLUSTER 2
PAB0384

>COG1250 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0017_1
AF0285_1
AF0434
AF1025
AF1122_1
AF1177
AF1190
AF1206
AF2017
AF2273_1
VNG0681G
VNG1313G_1
Ta0291_1
Ta0476
Ta0947
TVN0826
TVN1091
TVN1310_1
PAE1383_1
SSO0647
SSO2514_1
SSO2871
SSO2996
APE1484_1
FN1019
DR1068
DR1487_2
DR2477_1
DRA0143
CAC2009
CAC2708
Rv0468
Rv0860_2
Rv1715
MT0484
MT0883_2
MT1754
ML2161_2
ML2461
SA0224_1
BS_mmgB
BS_yusL_1
BH0204
BH1995
BH3488_1
BH3800
fadB_2
ydbU
yfcX_2
Z3604_2
ZfadB_2
ECs3224_2
ECs4774_2
YPO2747_2
YPO3766_2
STM2388_2
STM3983_2
VC1047_2
VC2758_2
PA1628
PA1737_2
PA3014_2
PA3590
PA5188
PA5386
RSc0244
RSc0474_1
RSc1759_2
RSc2013
AGc888_2
AGl2460
AGpA493_1
SMb21632
SMc00727
SMc01638_1
SMc02227_2
BMEI0099
BMEII0215
BMEII0497_2
BMEII1020
mll1034
mll4199_2
mlr3490
mlr5041
mlr5629_2
mlr6793
CC0076_2
CC0715
CC3189_2
RP560_1
RC0841
RC0842
CLUSTER 2
CC1813_2

>COG1263 (Putative duplication confidence score 0.765)
CLUSTER 1
FN1547_1
CAC0532_1
CAC0570_1
CAC1353_1
CAC3425_1
SPy1986_1
SP0758_1
SP1684_1
SA0183_1
SA0233_1
SA1547_1
SA2114_1
SA2326_1
BS_glvC_1
BS_ptsG_1
BS_ybfS_1
BS_yflF_1
BH0422_1
BH0673_1
BH0844_1
glvCm_1
malX_1
nagE_1
ptsG_1
Z5178_1
ZmalX_1
ZnagE_1
ZptsG_1
ECs0709_1
ECs1479_1
ECs2329_1
ECs4623_1
YPO1608_1
YPO2628_1
STM0685_1
STM1203_1
STM2758_1
BU356_1
VC0995_1
VC2013_1
PA3761_1
PM0876_1
PM1752_1
CC0449_1
CC0538_1
BB0116_1
BB0645_1
BBB29_1
MYPU_0170_1
MYPU_3610_1
MYPU_3640_1
MPN207_1
MG069_1
CLUSTER 2
CAC0423_2
CAC1407_2
Cgl1324_2
Cgl2590_2
Cgl2650
L145238_2
L37906_2
L90678_2
SPy0572_2
SPy1815_2
SPy2097_2
SP0577_2
SP1722_2
SP1884_2
SA0186_2
SA0432_2
SA2167_2
lin0026_2
lin1223_2
BS_bglP_2
BS_sacP_2
BS_sacX_2
BS_treP_2
BS_ybbF_2
BH0296_2
BH0595_2
BH1856_2
BH2216_2
BH3574_2
ascF_2
bglF_2
treB_2
yfeV_2
Z3694_2
ZascF_2
ZtreB_2
ECs3300_2
ECs3571_2
ECs5217_2
YPO3697_2
STM2570_2
VC0207_2
VC0910_2
VCA0653_2
PM1575_2
PM1846_2
RSp1285_2

>COG1285 (Putative duplication confidence score 1.000)
CLUSTER 1
aq_447
FN0215
DR0816
CAC3658
Rv1811
MT1859
L63770
SP1823
lin2751
BS_sapB
BH0541
BH3225
slr0014
all3396
yhiD
ZyhiD
ECs4388
YPO1660
YPO2332
STM3764
PA2148
PA2558
PA4635
HI0647
PM1753
RSc1461
AGl1431
AGpAbx97
SMc00799
BMEII0053
TP0774
CLUSTER 2
Rv3008
MT3088

>COG1290 (Putative duplication confidence score 1.000)
CLUSTER 1
VNG0582C
BS_qcrC_1
BH1674_1
slr0343
alr3422
CLUSTER 2
VNG0583G
Ta1222
Ta1228
TVN0367
TVN0373
PAE1350
SSO2656
SSO2805
SSO2970
APE1725
Q0105
Q0120
aq_044
DR0436
Cgl2141
Rv2196
MT2252
ML0879
BS_qcrB
BH1673
slr0342
all0253
alr3421
VC0574
PA4430
XF0909
NMB2052
NMA0384
RSc2928
HP1539
jhp1460
Cj1185c
AGc4073
SMc00188
BMEI0474
mll2706
mlr0971
CC0473
RP271
RC0359

>COG1292 (Putative duplication confidence score 1.000)
CLUSTER 1
VNG1077G
Cgl0867
Cgl2259
Cgl2282
Rv0917
MT0942
SA1183
SA1987
SA2408
lin2197
BS_opuD
BH1457
BH2645
BH3895
betT
caiT
yeaV
ZbetT
ZcaiT
ZyeaV
ECs0043
ECs0360
ECs2510
YPO1168
YPO2494
STM0074
VC1279
PA3933
PA5291
PA5375
HI1706
PM1791
NMB1277
NMA1483
SMb20333
TP0106
CLUSTER 2
SMc00279

>COG1295 (Putative duplication confidence score 1.000)
CLUSTER 1
MA2279
aq_453
FN1154
DR2609
CAC0168
CAC0485
Cgl0927
Rv2707
MT2780
ML1017
L1778
SPy1353
SP0657
SA1699
lin1818
BS_yfkH
BH3355
slr0119
all2070
alr3393
rbn
Zrbn
ECs4809
YPO0028
STM4027
VC2742
PA0951
PA2751
HI0276
PM1616
XF0432
NMB0524
NMA0700
RSc1559
RSp1664
HP1407
jhp1299
Cj1212c
AGl2474
SMb21356
SMb21363
SMc00734
BMEI0089
mll2378
mll3481
mll8068
mll9669
mlr9690
CC1840
RP496
RC0670
CT132
CPn0188
MYPU_2020
CLUSTER 2
Cgl0658
Rv3335c
MT3439
ML0687
yhjD
ZyhjD
ECs4402
YPO3985
STM3608

>COG1299 (Putative duplication confidence score 1.000)
CLUSTER 1
FN1441_3
DRB0073_2
CAC0234_2
Cgl1891_3
L185031_3
SPy0855_3
SP0877_3
SP1617
SA0655_3
SA2434_2
lin0377_2
lin0423
lin0448
lin2240
lin2429_3
BS_fruA_3
BS_yjdD_2
BH0828_3
fruA_3
frvB_2
frwC
hrsA_3
ypdG
Z3652
ZfruA_3
ZfrvB_2
ZfrwCm
ECs3059_3
ECs3266
ECs4825_2
ECs4878
YPO0404
YPO1300_3
STM2204_3
STM3255_2
STM3858_2
STM4112
VC1821_1
VC1822_2
VC1826_3
VCA0516_2
PA3560_2
HI0446_3
RSc2863_2
BB0408_3
BB0629_3
MYPU_1290_3
MPN078_3
MG062_3
CLUSTER 2
SPy0146
SA0298
SA2320

>COG1310 (Putative duplication confidence score 1.000)
CLUSTER 1
AF2198
VNG0778C
VNG1818a
MA1736
MTH971
MK0214
Ta0623
TVN1035
PH0451
PH1488
PAB1045
PAB1919
PAE2024
SSO0111
APE0681
YDL216c
YFR004w
YOR261c
SPAC1687.13c
SPAC31G5.13
SPBC4C3.07
SPCC1682.10
ECU04g0420
ECU11g0570
aq_1691
DR0402
Rv1334
MT1376
sll0864
all2907
Z0978_1
Z1377_1
Z1819_1
Z2143_1
Z2351_1
Z3081_1
Z3314_1
Z6032_1
ECs0840_1
ECs1117_1
ECs1558_1
ECs1646_1
ECs1986_1
ECs2163_1
ECs2237_1
ECs2722_1
ECs2946_1
YPMT1.08c_1
YPO2123_1
STM0922_1
STM1046_1
STM2591_1
PA0639_1
PA2102
RSc1695_1
CLUSTER 2
SPAC19B12.10

>COG1318 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0796
MJ1053
MK0231
PH0283
PAB2181
PAE3144
APE0469
aq_2056
TM0369
CLUSTER 2
aq_600

>COG1331 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1737
VNG1303C
MA3726
MTH753
MTH754
Ta0991
TVN0731
PAE2717
SSO2204
APE2533
aq_2146
DR0844
CAC3546
Rv1084
MT1115
BS_yyaL
BS_yyaO
all1237
BMEI0004
BMEI0005
mlr4484
CT356
CPn1057
CLUSTER 2
VNG1905C

>COG1348 (Putative duplication confidence score 0.500)
CLUSTER 1
MA1205
MA1213
MA1633
MA2032_1
MA3627
MA3895
MTH1560
MTH643
MJ0879
MK1416
FN0303
CAC0253
all1455
alr0874
SMa0825
mlr5905
CLUSTER 2
slr0749
all5078

>COG1362 (Putative duplication confidence score 0.667)
CLUSTER 1
YHR113w
YKL103c
SPAC4F10.02
FN0775
CAC0607
Cgl1463
Rv0800
MT0821
ML2213
PA3247
BB0627
CLUSTER 2
TM0365
CAC1091
BB0366

>COG1363 (Putative duplication confidence score 0.667)
CLUSTER 1
AF1795
VNG1498G
MA3849
MTH437
MJ0555
MK0383
PH0519
PH1527
PH1821
PAB0437
PAB2096
PAB2375
PAE1385
PAE1474
APE1335
TM1048
TM1049
TM1050
DR0229
CAC0214
CAC0215
CAC0216
L193909
SPy0115
SP1865
SA1566
SA2244
lin1180
lin1652
BS_ysdC
BS_ytoP
BH3132
BH3257
frvX
sgcX
ypdE
Z3649
ZfrvX
ECs3264
ECs4824
STM1612
UU280
MYPU_7300
CLUSTER 2
PH0737
PAB0869
FN0999
DR0946
CAC0690
SP0627
SA1198
lin0981
BS_yhfE
all3633
PA2172
PA3461
SMb20466

>COG1382 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1150
VNG0234C
MA3850
MTH678
MJ0987
MK0375
Ta1137
TVN1213
PH0532
PAB1364
PAE2199
SSO0730
APE1440
YLR200w
SPAC3A11.13
CLUSTER 2
YNL153c
SPAC227.05

>COG1387 (Putative duplication confidence score 0.667)
CLUSTER 1
AF1233
AF1550
MA0727_2
MA1289
MA1291
MTH550_2
MTH576
MJ1295
MK0169
MK1681
Ta0758_2
TVN0856_2
PH1316
PAB0560
aq_1422_2
TM0804
FN0428
DR0467_2
CAC0509
CAC2727
Rv3856c
MT3971
L37351
SA0990_2
lin1194_2
BS_yshC_2
BH3107_2
ycdX
ZycdX
ECs1411
YPO2037
STM1136
VCA0894
SMb21226
CLUSTER 2
YFR025c
SPCC1672.01
DR0470
lin0579
BS_ytvP
BH3206

>COG1388 (Putative duplication confidence score 1.000)
CLUSTER 1
aq_652_1
DR0910
DR1325_1
DR1749_1
CAC1232_1
CAC2903
Cgl1707
Rv1288_1
MT1326_1
L127411_2
L137446_2
L68758_2
SA0423_1
SA0620_1
SA0710_1
lin0591_1
lin0591_3
lin0879_2
lin1341
lin1703
lin2666_1
lin2838_2
BS_lytE_1
BS_xlyA_2
BS_yhdD_1
BS_ykvP_2
BS_yneA
BS_yocH_1
BS_yojL_1
BS_yrbA
BH0693
BH1803_1
BH2879_1
YPO0370_2
VC0344_2
PA4947_2
HI0066_2
PM0903_2
CT601
CT759
CPn0780
CPn0902
BB0625_1
CLUSTER 2
BH1221_1

>COG1398 (Putative duplication confidence score 0.500)
CLUSTER 1
YGL055w_1
SPCC1281.06c_1
sll0541
all1599
all4991
RSp0792
RP038_1
RC0062_1
CLUSTER 2
PA0286
RSc2450

>COG1402 (Putative duplication confidence score 1.000)
CLUSTER 1
VNG0124C
VNG1769Cm
MTH651
MJ0116
MK0183
PAE2983
SSO2832
APE0954
TM0413
Rv0695
MT0722
lin2796
BH0226
sll0596
slr0596
all4283
alr1374
AGl731
SMc02977
BMEII0309
mlr1298
mlr3472
CC3578
CLUSTER 2
mlr8484

>COG1433 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0668
AF2377
AF2378
AF2388_2
MA2085_2
MA4243
MA4244
MTH1172_2
MTH1175
MTH1177
MJ0327
MJ0580
MK1241
Ta1041m
Ta1370
TVN0554
PH0822
PH0880
PH1227
PH1383
PAB0517
PAB1692
PAE1037
TM1290
TM1816
CAC3167
VC1323
CLUSTER 2
PAE1034

>COG1434 (Putative duplication confidence score 1.000)
CLUSTER 1
aq_1986
TM1674
DR0210
CAC0352
CAC0441
Cgl0695
Cgl2222
Cgl2946
L169301
L17153
L171552
SA2148
lin1003
lin2536
sll1606
all0244
all1816
all7174
alr1740
alr2467
alr5243
ycbC
ydcF
ZycbC
ZydcF
ECs1003
ECs2020
YPO2511_2
STM0098
STM0990
STM1640
VC1698
VC1718
PA2066
PA3985
HI1701
PM0506
XF2101
NMB0004
NMA0251
RSc0146
RSc1968
RSc2460
AGl144
AGl2436
SMc00331
SMc00715
BMEI0074
BMEI0810
BMEI1842
BMEI2016
BMEII0841
mll0674
mlr3524
CC2218
RP875
RC1356
CLUSTER 2
VCA0595

>COG1449 (Putative duplication confidence score 0.500)
CLUSTER 1
MA4052
MA4053
MJ1611
Ta0339m
TVN0431
PAE3428
SSO0988
CLUSTER 2
Ta0129_1
PH0193
PAB0118
PAB0122_1
PAE1048
PAE3454_1
SSO1172
aq_720
slr0337
alr0627
alr1310
TP0147

>COG1450 (Putative duplication confidence score 0.571)
CLUSTER 1
aq_1288
FN2086
gspD
YPO0816
YPO2280
VC0402
PA0685
PA1382
PA1868
PA3105
XF1527
RSc3114
Cj1474c
mll6829
CC0173
CT572
CT674
CPn0702
CPn0815
CLUSTER 2
Z4197
ZescC
ECs3733
ECs4575
YPCD1.52
YPO0257
STM1394
STM2898
PA1716
RSp0874
mll6338

>COG1455 (Putative duplication confidence score 1.000)
CLUSTER 1
CAC0386
CAC2964
L177520
L20847
L31294
SPy1917
SPy2050
SP0250
SP0310
SP0474
SP0478
SP1185
SP2022
SA1992
lin0033
lin0326
lin0392
lin0874
lin0900
lin0915
lin2459
lin2832
lin2856
lin2906
BS_licC
BS_ydhO
BS_ywbA
BH0911
BH3919
celB
ZcelB
ECs2443
YPO2679
STM1313
VC1282
BBB04
CLUSTER 2
VC1211_1

>COG1459 (Putative duplication confidence score 1.000)
CLUSTER 1
aq_1285
aq_747
TM0094
FN2094
DR1863
CAC2104
L0314
SPy0102
SP2052
SA1373
lin1383
BS_comGB
BH2831
slr0162
slr0163
all2442
hofC
hofF
ZhofC
ECs0110
YPO3427
STM0142
VC0406
VC2425
VC2731
PA0687
PA2676
PA3102
PA4527
HI0297
PM0086
XF1518
XF2538
NMB0333
NMA2155
RSc2309
RSc2826
RSc3116
RSp0149
RSp0467
mlr6821
CC0175
CT570
CPn0817
CLUSTER 2
VC0836

>COG1470 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1138
MA1537
PH1368
PAB2446
BH3215
CLUSTER 2
MA4361

>COG1472 (Putative duplication confidence score 0.824)
CLUSTER 1
SSO3032
SPBC1683.04
TM0025
TM0076
CAC1075
Cgl0317
Cgl0318
Rv0186
MT0195
lin1840
BH1908
bglX
ZbglX
ECs3019
YPO0616
YPO2803
STM2166
PA1726
XF0439
XF0845
CC0797
CC0968
CC1105
CC1756
CC2052
CC3054
CLUSTER 2
TM0809
DR1333
CAC0182
Cgl2792
Rv0237
MT0251
ML2569
L100350
BS_ybbD
BH0675
sll1538
all1831
ycfO
ZycfO
ECs1485
YPO1615
STM1209
VC0692
PA3005
HI0959
PM0071
XF2355
NMB0530
NMA0708
RSc0769
RSc1068
AGc3141
SMc02071
BMEI1087
mll1089
mll9166
CC2006
RP706
RC1086
BB0002
BB0620

>COG1473 (Putative duplication confidence score 0.933)
CLUSTER 1
VNG0437C
MA1192
TVN0740
PH0722
PH1043
PAB0873
SSO1355
SSO1952
TM1516
FN0590
FN0703
FN1063
DR0339
DR1711
CAC0921
CAC1014
Cgl0667
Cgl2031
Cgl2860
Rv3305c
MT3404
L182020
L80177
SP2096
SA0098
SA0507
SA1230
SA2120
lin0542
lin1011
lin2950
lin2952
BS_amhX
BS_hipO
BS_yhaA
BS_ykuR
BS_yxeP
BH1613
BH2668
sll0100
slr1653
all2102
alr4934
ydaJ
Z5522
ZydaJ
ECs1922
ECs4892
PA2922
PA4344
HI0584
PM1300
RSc2511
RSc2871
Cj0605
Cj0985c
AGc4953
AGl2386
AGl2766
AGl2806
AGl3029
AGl849
AGl879
SMb21279
SMc00682
SMc02256
BMEI0033
BMEI0034
mlr2296
mlr3583
mlr7940
mlr9207
CC2456
CC2809
CLUSTER 2
Ta0235
TVN1360
FN1186
CAC0295
Cgl0102
Rv3306c
MT3405
SA1935
abgB
Z2427
ECs1921
AGl2896
SMc02024
mll7671
CC1556

>COG1479 (Putative duplication confidence score 1.000)
CLUSTER 1
VNG1585Cm
MA2417_1
MJ0686_1
PH0009
TM0991_1
FN0677
CAC1168
Cgl0713
Cgl1252_1
lin0337
lin0833
all3615_1
all4179
all8551
alr1266
alr4229
alr5156
alr5159
Z5943m_1
Z5949
Z5950
ECs5304
ECs5305_1
ECs5309
ECs5310
YPO3437
VC1766
VC1767
VCA0199
PM0594
PM0595
NMA2230
HP0186
HP0187
HP0426
HP0513_1
HP0629
HP0937
HP0938
HP1396
HP1397
HP1409
jhp0174
jhp0462_1
jhp0572
jhp0872
jhp0873
jhp0955
jhp0957
jhp1301
jhp1302
jhp1430
jhp1431
Cj0008
UU090
UU527
MYPU_1870
CLUSTER 2
HP0188

>COG1483 (Putative duplication confidence score 1.000)
CLUSTER 1
AF2338
AF2339
MK1260
PH0902
PAB0589
APE0415
TM0988
SMc02155
CLUSTER 2
AF2340

>COG1486 (Putative duplication confidence score 1.000)
CLUSTER 1
TM0434
TM0752
TM1068
TM1834
CLUSTER 2
TM1281
CAC0533
CAC3426
lin0526
lin0540
lin2454
BS_glvA
BS_licH
BS_lplD
BS_melA
BH0183
BH0912
BH2228
celF
glvG
melA
Z5177
ZcelF
ZmelA
ECs2440
ECs4622
ECs5101
YPO0166
STM1316
STM4298
VC1284
AGl436
AGl446
SMb21463
SMb21643
SMb21648
mlr6443
mlr6450

>COG1492 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1338
VNG1576G
MA3250
MTH787
MJ0484
MK1414
Ta0075
TVN0031
SSO3233
FN0977
FN2070
DRB0012
CAC1374
Rv0255c
MT0268
lin1171
BH1591
slr0618
alr2377
STM2019
VCA0727
PA1277
RSc2390
AGc5093
SMc04309
BMEI0690
mll1198
CC1751
CC2694
CLUSTER 2
MTH1497
MJ0138

>COG1498 (Putative duplication confidence score 1.000)
CLUSTER 1
AF2088
VNG1174G
MA0340
MTH1214
MJ0694
MK0559
Ta1243m
TVN0353
PH0053
PAB2305
PAE3232
SSO0939
APE2199
YLR197w
YOR310c
SPAC23G3.06
SPBC646.10c
ECU04g0820
ECU09g1600
CLUSTER 2
YGR091w
SPBC119.13c

>COG1499 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1972
VNG2474C
MA3869
MTH1768
MJ1650
MK0517
Ta0988
TVN0478
PH0990
PAB1716
PAE1653
SSO2383
APE0748
YHR170w
SPAC16C9.03
ECU09g1380
CLUSTER 2
APE2334

>COG1503 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1220
VNG2131G
MA0042
MA1008
MTH878
MJ0829
MK0759
Ta0534
TVN0588
PH1584
PAB0396
PAE2906
SSO2339
APE1988
YBR143c
SPAC1834.01
ECU05g0360
aq_199
CLUSTER 2
VNG1842H
MA1281

>COG1505 (Putative duplication confidence score 0.500)
CLUSTER 1
PH1262
PAB0762
DR2503
Cgl0339
Rv0457c
MT0473
all2533
NMB1877
NMA0579
mll1209
CC3687
CC3688
RC0215
CLUSTER 2
RP174
RC0216
RC0217
RC0218

>COG1517 (Putative duplication confidence score 1.000)
CLUSTER 1
MJ1666
TVN0114
TVN0275
PH0168
PAE0117
SSO1389
SSO1711
SSO1787
SSO1788
aq_378
CLUSTER 2
PAE0119
PAE0121

>COG1524 (Putative duplication confidence score 0.667)
CLUSTER 1
AF0247
Ta1349
TVN0258
PH1114
PAB2429
SSO2423
YCR026c_2
YEL016c
SPBC725.05c
TM0626
TM1581
CAC0477
Cgl2398
lin1457
BH1564
BH1955
all0415
PA3251
XF2599
Cj0729
SMb21538
mll5120
mll5889
mlr9275
CC1277
CC2461
CLUSTER 2
YJL062w
YKL165c
YLL031c
SPAC13G6.03
SPBC27B12.06
SPBC839.08c
ECU07g0310

>COG1529 (Putative duplication confidence score 0.667)
CLUSTER 1
PAE1935
PAE2478
SSO1209
SSO2091
SSO2150
SSO2639
SSO2760
SSO2942
SSO3009
SSO3239
APE0708
APE2216
DRA0231
DRA0237
Rv0373c
MT0388
BS_yurC
BH0748
BH1977_1
yagR
ygeS
ygfN_2
Z4205
Z4220_2
ZyagR
ECs0314
ECs3739
ECs3754_2
PA1933
PA4621
RSc1468
AGpA739
SMa2037
SMa2353
SMb20132
SMb20395
SMb21340
SMb21556
SMc03102
mll1128
mll2287
mll4880
mlr1703m
mlr1927
mlr7702
TP0079
CLUSTER 2
aq_227
PA1601
PA1880
PA2378
RSc0627
RSc1889
RSp0325
SMa1488
SMb20342
SMb20404
SMb21339
mll3836
CC0021
CC2269

>COG1543 (Putative duplication confidence score 1.000)
CLUSTER 1
PH0368
CLUSTER 2
PH1386
PAB1857
CAC2414
Rv3031
MT3115
ML1714
BH1415_1
sll0735
alr2450
TP0358

>COG1549 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0587
VNG1957G
MA4632
MTH1665
MJ1022
MK1084
Ta0924
TVN1069
PH0135
PAB0082
SSO2201
CLUSTER 2
MA0927

>COG1553 (Putative duplication confidence score 0.600)
CLUSTER 1
MA3926
MTH1357
MJ0989
MK0008
TM0981
ychN
ZychN
ECs1724
YPO3130
STM1769
PM0515
CLUSTER 2
yheN
ZyheN
ECs4196
YPO0197
STM3451
BU532
VC0356
PA2605
HI0576
PM1351

>COG1568 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1611
MJ1273
PH0728
PAB0872
aq_1754
CLUSTER 2
MJ0675

>COG1571 (Putative duplication confidence score 1.000)
CLUSTER 1
AF2259
VNG2110C
MA3525
MTH966
MJ1095
MK1003
Ta0545
TVN0599
PH1812
PAB0247
PAE0933
SSO0258
APE0656
CLUSTER 2
MA1981
MTH1391
MJ0921
MK0351

>COG1573 (Putative duplication confidence score 0.583)
CLUSTER 1
AF2277
VNG0707C
VNG1228C
VNG2082G
MA2265
MA3593
Ta0477
TVN0827
PH1472
PAB0474
PAE0651
PAE1327
SSO2275
SSO2733
APE0427
aq_1693
TM0511
FN0901
DR1751
CAC0219
CAC2997
Rv1259
MT1297.1
ML1105
sll1217
alr3018
NMB1873
NMA0583
RSc1369
HP0650
jhp0595
Cj0963
AGc1810
AGc3961
SMb21448
SMc02375
BMEI1299
BMEI1321
mll5147
mll7705
mll7751
CC1333
CC1549
CC2333
RP845
RC1309
TP0229
CLUSTER 2
FN1259
L68066
SPy0472
SP0624
VC0266
HI0220.2
RSc1329
AGc3461
SMc04210
BMEI1097
mll0558
CC2084

>COG1577 (Putative duplication confidence score 1.000)
CLUSTER 1
AF2289
VNG1145G
MA0602
MTH46
MJ1087
MK0993
PH1625
PAB0372
PAE3108
SSO0383
APE2439
YMR208w
SPAC13G6.11c
ECU09g1780
L7866
SPy0876
SP0381
SA0547
lin0010
BB0688
CLUSTER 2
L10014
SPy0878
SP0383
SA0549
lin0012

>COG1581 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1067
AF1956
MTH1483
MJ0212
MK0715
MK1089
Ta0912
TVN1058
PHS053
PAB7094
PAE2226
SSO0962
APE1823
APES060
CLUSTER 2
SSO6877

>COG1599 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0382
AF0780
VNG0133G
VNG1255C
VNG2160C
MA0590
MA3019
MA4645
MTH1384
MTH1385
MJ1159
MK1441
Ta0387
Ta1149
TVN1185
TVN1236
PH1893
PAB2163
SSO2364
APE1323
YAR007c
SPBC660.13c
ECU01g0880
ECU10g0600
CLUSTER 2
VNG6403H
VNG7134

>COG1615 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1421
CAC0010
Cgl0762
Rv0064
Rv3193c
MT0070
MT3285
ML0644
sll1060
alr1037
CLUSTER 2
alr1036

>COG1621 (Putative duplication confidence score 1.000)
CLUSTER 1
YIL162w
SPAC8E11.01c
SPCC191.11
TM1414
CAC0425
CAC1462
CAC1773
Cgl2591
SPy1816
SP1724
SP1795
SA1846
BS_sacA
BS_sacC
BS_yveB
BH1858
Z3625
ECs3243
VCA0655
PM1848
RSp1284
AGc1721
CLUSTER 2
Cgl1092

>COG1632 (Putative duplication confidence score 1.000)
CLUSTER 1
AF2319
VNG0177G
MA1784
MTH690
MJ0983
MK0389
Ta1286m
TVN0535
PH0978
PAB0575
PAE1833
SSO0742
APE1452
YLR029c
YMR121c
SPAC1783.08c
SPCC576.11
ECU11g1380i
CLUSTER 2
PAE1639_2

>COG1640 (Putative duplication confidence score 1.000)
CLUSTER 1
PAE1209
aq_723
FN0858
DR1637
Cgl2245
Rv1781c
MT1831
L93919
SPy1292
SP2107
sll1676
alr3871
malQ
ZmalQ
ECs4258
YPO0126
STM3513
VCA0014
PA2163
HI1356
PM0540
RSp0236
CT087
CPn0326
BB0166
CLUSTER 2
L94405

>COG1641 (Putative duplication confidence score 1.000)
CLUSTER 1
AF2097
MA0429
MTH1109
MJ1387
MK0293
MK1105
TM0964
CAC0774
Cgl2418
slr1411
all0200
CLUSTER 2
MA0369

>COG1643 (Putative duplication confidence score 1.000)
CLUSTER 1
YER013w_2
YGL120c
YKL078w
YKR086w
YLR419w
YMR128w
YNR011c
SPAC10F6.02c_2
SPAC145.03
SPAC2G11.11c
SPAPB1A10.06c
SPBC15C4.05
SPBC16H5.10c
SPBC1711.17
SPBC19C2.01
SPCC895.09c
ECU04g0250
ECU09g0150
ECU10g0680
ECU11g0860
DR0420
Cgl0142
Cgl1881
hrpA
hrpB
ZhrpA
ZhrpB
ECs0152
ECs2015
YPO2322
YPO3394
STM0189
STM1641
VC0601
VC1382
PA3297
PA3961
HI1070
PM0769
XF1229
XF1383
NMB2007
NMA0433
RSc1251
AGc86
SMc02586
BMEI1817
BMEI1818
mlr5306
CC1185
TP0526
BB0827
CLUSTER 2
NMB2011
NMA0430

>COG1653 (Putative duplication confidence score 1.000)
CLUSTER 1
VNG6277G
Ta0144
Ta0691_2
TVN0205
TVN1143
PH0025
PH0753
PH1039
PH1214
PAB2333
PAE0689
PAE1324
SSO0999
SSO2847
SSO3066_1
APE0035
APE1630
TM0432
TM0595
TM0810
TM1120
TM1235
TM1855
DR1438
CAC0429
CAC0662
CAC0664
CAC1456
CAC2912
CAC3672
Cgl0706
Cgl1352
Cgl2408
Rv1235
Rv2041c
Rv2318
Rv2833c
MT1273
MT2101
MT2381
MT2899
ML1086
ML1427
ML1770
L127223
SPy0252
SPy1591
SPy1592
SP0092
SP1683
SP1690
SP1796
SP1897
lin0220
lin0762
lin0852
lin1841
lin2115
lin2972
BS_araN
BS_lplA
BS_msmE
BS_yesO
BS_ytcQ
BS_yurO
BH0482
BH0796
BH0905
BH1064
BH1079
BH1117
BH1244
BH1864
BH1913
BH1924
BH2111
BH2226
BH2726
BH3680
BH3690
BH3845
slr0529
slr1865
slr1897
all1027
all1916
alr2722
alr4277
ugpB
ycjN
Z2474m
ZugpB
ECs1888
ECs1889
ECs4299
YPO0612
YPO1719
YPO1893
YPO2477
YPO3472
YPO3796
STM3557
VC1549
VCA1033
PA2338
PA3190
PM1762
XF2448
RSc1264
RSc2144
RSc3051
AGc1045
AGc2594
AGc4552
AGc4715
AGc529
AGc689
AGl1009
AGl1217
AGl1777
AGl1912
AGl2941
AGl2966
AGl3070
AGl3153
AGl3248
AGl3270
AGl3289
AGl3319
AGl3359
AGl3389
AGl3404
AGl3413
AGl3424
AGl3560
AGl456
AGl615
AGl841
AGpA114
AGpA115
AGpA379
AGpA587
AGpA676
AGpA77
SMa0709
SMa1337
SMa1364
SMa2305
SMb20231
SMb20325
SMb20416
SMb20538
SMb20634
SMb20660
SMb20971
SMb21090
SMb21103
SMb21151
SMb21221
SMb21461
SMb21595
SMb21604
SMb21652
SMc01496
SMc01628
SMc01977
SMc02471
SMc02514
SMc02873
SMc03061
SMc04135
SMc04259
SMc04396
BMEI1716
BMEII0115
BMEII0542
BMEII0590
BMEII0625
BMEII0754
BMEII0755
BMEII0945
mll0702
mll0854
mll1712
mll3319
mll3384
mll3503
mll3590
mll4149
mll4927
mll5113
mll5302
mll7154
mll7157
mlr2244
mlr2326
mlr3050
mlr3639
mlr4771
mlr4910
mlr6435
mlr6651
mlr7000
mlr7091
mlr7225
mlr7261
TP0074
TP0737
CLUSTER 2
mll8488

>COG1675 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0757
VNG0757G
MA3871
MTH1669
MJ0777
MK0495
PH0619
PAB0950
PAE0781
SSO0266
APE2004
YKL028w
SPAC458.07
ECU07g0220
CLUSTER 2
SPAPYUG7.01

>COG1724 (Putative duplication confidence score 0.600)
CLUSTER 1
MA0765
MA4126
TM1312
ssr1766
asl1824
jhp0961
CLUSTER 2
MA2135
slr1999_1
asl2714
YPO1818
SMc04441
msr2149
CC3184

>COG1736 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1803
VNG0854C
MA0718
MTH1319
MJ0483
MK1517
Ta0255
TVN1339
PH1105
PAB0746
PAE2994
SSO0293
APE0447
YIL103w
YKL191w
SPBC17D1.02
SPBC3B8.05
ECU07g0980
CLUSTER 2
ECU06g1330

>COG1739 (Putative duplication confidence score 0.500)
CLUSTER 1
VNG2298a
MA0784
SPBC14C8.09c
TM1713
FN1907
DR2203
CAC2296
Cgl2074
L98095
SPy1617
SP2209
SA0703
lin2660
BS_yvyE
BH3630
yigZ
ZyigZ
ECs4776
STM3985
VC2757
PA0168
HI0722
PM1497
NMB2153
NMA0240
RSc3277
HP1485
jhp1378
Cj0429c
AGl1623
SMc01701
BMEII0420
BB0430
UU262
MYPU_2760
CLUSTER 2
YCR059c
YDL177c
SPAC27E2.02

>COG1749 (Putative duplication confidence score 1.000)
CLUSTER 1
aq_1859
CAC2154
lin0705
flgE
ZflgE
ECs1454
YPO0725
YPO1802
STM1177
BU340
VC2197
PA1080
RSp0345
HP0870
jhp0804
Cj0043
Cj1729c
AGc1012
SMc03047
BMEII0159
mlr2937
CC0902
CC2839
TP0727
BB0283
CLUSTER 2
HP0908
jhp0844

>COG1757 (Putative duplication confidence score 0.500)
CLUSTER 1
VNG0436G
VNG2123G
VNG6313G
FN0352
FN0624
FN0650
FN0978
FN1414
FN1420
FN1422
FN1860
FN2077
CAC0744
SA2094
SA2117
BS_mleN
BS_nhaC
BH3946
YPO0624
STM1556
VC2037
VCA0193
HI1107
NMB0536
NMA0715
BB0637
BB0638
CLUSTER 2
VNG1985C
VNG2124C
PH1889
PAB2161
APE2538
CAP0140
BH3449
VC1131
VCA0213
HI1586
PM0871
NMB0531
NMA0709
HP0946
jhp0880
Cj0832c

>COG1759 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0113
MA0206
MTH1201
MJ0136
MK0588
PH1348
PAB0547
PAE0608
SSO0239
CLUSTER 2
AF0256
MA3689
PH0324
PAB1272
PAE0604
SSO0241

>COG1760 (Putative duplication confidence score 1.000)
CLUSTER 1
FN1106
DR0377
CAC0674
Cgl1607
Rv0069c
MT0075
ML1755
L44083
SPy2190
SP0105
SA2318
lin1926
BS_ylpA
BH2496
sdaA
sdaB
yhaP
Z4464
ZsdaA
ZsdaB
ECs2523
ECs3657
ECs3992
YPO1771
STM1826
STM2196
STM2971
STM3240
VC1300
VCA0666
PA2443
PA5379
HI0288
PM0036
NMB0211
NMA0057
RSc1099
RSc1100
RSc3296
RSp0045
HP0132
jhp0120
Cj1624c
AGc3229
SMc01256
BMEI0811
mll0670
CC3108
CLUSTER 2
DR0497
CAC0673
L43452
SPy2189
SP0106
SA2319
lin1927
BS_yloW
BH2497
yhaQ

>COG1766 (Putative duplication confidence score 1.000)
CLUSTER 1
aq_1182
TM0221
CAC2162
lin0721
BS_fliF
BH2458
fliF
ZfliF
ECs2677
YPO0714
YPO1830
STM1969
BU073
VC2133
PA1101
RSp0390
HP0351
jhp0325
Cj0318
AGc922
SMc03014
BMEII0151
mlr2928
CC0905
TP0399
BB0291
CLUSTER 2
BMEII0152

>COG1773 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0341
AF0880
AF1349
MTH1453_1
MTH155
MTH156
MJ0735
MJ0740
PAB7224
TM0659
FN1424_3
CAC2778
Rv3250c
Rv3251c
MT3348
MT3349
slr2033
alr3843
asl4557
ygaK_2
Z4018_2
ECs3566_2
STM1533_2
STM2840_2
PA5350
PA5351
XF0379
NMB0993
NMA1201
RSc0667
CC2495
TP0991
CLUSTER 2
MJ0737

>COG1775 (Putative duplication confidence score 0.667)
CLUSTER 1
AF1957
MJ0007
MK0258
FN0208
yjiM
ZyjiM
ECs5298
CLUSTER 2
AF1958
FN0207
CAC3622

>COG1788 (Putative duplication confidence score 0.500)
CLUSTER 1
AF1199
SSO1083
FN0202
Rv3551
MT3655
PA0226
SMb20587
mll4183
CLUSTER 2
FN0272
FN1857
DRA0054_1
DRA0068
CAP0163
Cgl2339
Rv2504c
MT2579
SPy0141
SPy1638
BS_yodS
BS_yxjD
BH2259
atoD
PA1999
HI0774
RSc1570
RSc2254
HP0691
jhp0637
AGl1055GM
BMEII0643
BMEII0644
CC0206
CC2405
RC0904
RC0905

>COG1794 (Putative duplication confidence score 0.667)
CLUSTER 1
AF1422
PH1733
PAB2073
ygeA
ZygeA
ECs3697
YPO2758
STM3015
PM1626
RSc0212
Cj0085c
AGl1549
AGl3474
SMc01404
mll4070
CC3278
CLUSTER 2
PH0670
PAB0912
L92665
BS_racX
STM4510
CC2033

>COG1800 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0384
MJECL39
MJECS12m
PH0672
CLUSTER 2
MJ1282
PH1321

>COG1804 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0020
AF0973
AF0974
AF0990
AF1315
TVN0908
TVN1161
PAE2467
SSO1343
SSO3144
DR1717
DRA0025
Rv0855
Rv1143
Rv1866
Rv3272
MT0878
MT1176
MT1915
MT3372
caiB
yfdE
yfdW
Z3639
ZcaiB
ZyfdEm
ECs0041
ECs3250
ECs3251
ECs3254
STM0072
PA0446
PA0882
PA1188
PA3592
PA3733
RSc0796
RSc1197
RSc1375
RSp1421
AGc3858
SMb21089
SMb21182
BMEI0898
BMEII0224
BMEII1019
BMEII1076
mll1018
mll7158
mlr1614
mlr2316
mlr6096
CC1841
CC2325
CC3562
CLUSTER 2
RSc3367

>COG1816 (Putative duplication confidence score 1.000)
CLUSTER 1
YBR284w
YJL070c
YML035c
SPBC106.04
CLUSTER 2
YNL141w
SPBC1198.02
SPBC1683.02
CAC3005
Rv3313c
ML0700
L87453
all4418
add
Zadd
ECs2331
STM1463
VC2751
PA0148
RSc2098
AGc218
SMc04120
mll3163
CC3180
TP0045

>COG1820 (Putative duplication confidence score 1.000)
CLUSTER 1
SSO2673
TM0814
FN1133
DRA0066
CAC0188
Cgl2593
Rv3332
MT3435
L173068
SPy1694
SP2056
SA0656
lin0955
lin2213
BS_nagA
BH0421
all0988
agaA
nagA
Z4489
ZnagA
ECs0707
ECs4015
YPO0838
YPO2626
STM0683
VC0994
VC1783
PA3758
HI0140
PM0874
XF1465
AGc4726
SMc02878
BMEII0385
mll4766
CC0443
CC0534
BB0151
MYPU_3690
CLUSTER 2
MYPU_3680

>COG1822 (Putative duplication confidence score 1.000)
CLUSTER 1
MTH1461
MTH655
MJ0419
PH0088
PAB0054
CLUSTER 2
MJ0420
PH0089
PAB0055

>COG1830 (Putative duplication confidence score 0.571)
CLUSTER 1
AF0108
AF0230
VNG0309C
VNG0683C
MA0439
MA2666
MA3889
MA4591
MTH579
MJ0400
MJ1585
MK1409
PH0082
PAB0049
SSO3226
APE0011
aq_1554
yneB
ZyneB
ECs2124
YPO0408
STM4078
PM1278
AGl1940
SMb20498
mlr7221
CLUSTER 2
all3735
fbaB
Z3260
ECs2900
STM2141
CT215
CPn0281

>COG1840 (Putative duplication confidence score 0.600)
CLUSTER 1
VNG0924G
MA1229
MA1271
FN0128
FN0308
FN0375
Cgl0423
SPy1063
SP0243
SP1826
SA0217
BH0513
sll0237
slr0513
slr1295
alr1382
ZafuA
ECs0415
YPO2958
YPO3050
STM0429
VC0608
VCA0603
VCA0685
PA2377
PA3250
PA4687
PA5217
HI0097
HI0131
PM0051
PM0203
PM0953
PM0954
PM0955
PM1457
XF0324
NMB0634
NMA0844
RSc1791
RSc2934
RSc2937
Cj0175c
Cj0727
AGc346
AGc3652
AGc3890
AGc4480
AGc715
AGl196
AGl198
AGl591
SMa0522
SMa0523
SMb20157
SMb20158
SMb20365
SMb20723
SMb21540
SMc00784
SMc01605
SMc04317
BMEII0565
BMEII0584
BMEII1120
mll3069
mll3626
mlr3495
CLUSTER 2
PAE0061
PAE3657
APE1728
STM2398
VCA0706
PM1458

>COG1850 (Putative duplication confidence score 0.500)
CLUSTER 1
AF1587
AF1638
MA4555
MJ1235
PH0939
PAB1580
BS_ykrW
slr0009
alr1524
SMb20198
CLUSTER 2
SMb20393
mll7006

>COG1858 (Putative duplication confidence score 1.000)
CLUSTER 1
MA2908
MA2925
aq_136
DRA0301
yhjA
ZyhjA
ECs4398
YPO3342
STM3820
VC0089
PA4587
PM0939
RSc2493
RSp0718
RSp1173
HP1461
jhp1354
Cj0020c
Cj0358
AGc5068
mll1163
mlr1826
mlr5805
CLUSTER 2
PA3032

>COG1863 (Putative duplication confidence score 1.000)
CLUSTER 1
VNG0571C
MA4568
MTH1251
MJ0953
PH0946
PH1427
PH1456
PAB0485
PAB0802
PAB1401
PAB1884
TM1205
DR0748a
DR0884
Cgl2675
SA0582
SA0809
lin2481
BS_mnhE
BH1315
VCA0154
PA1057
AGc1664
AGc898
SMc00055
SMc03182
BMEII0767
RP156
RC0199
CLUSTER 2
Cgl0267

>COG1875 (Putative duplication confidence score 1.000)
CLUSTER 1
TM0495
Cgl0065
Rv1095
MT1127
ML1951
BS_ylaK
BH2629
VC2507
PA3919
XF0959
RSc1316
CT015
CPn0106
CLUSTER 2
XF0960

>COG1882 (Putative duplication confidence score 0.667)
CLUSTER 1
AF1449
MTH346
SPy2049
SP0251
pflD
ybiW
Z1046m
ZpflD
ECs0900
ECs0901
ECs4880
STM0843
STM4114
RSc1546_2
CLUSTER 2
FN0262
CAC0980
L57408
SPy1849
SP0459
SA0218
lin1443
lin2031
pflB
tdcE
ZpflB
ZtdcE
ECs0986
ECs3994
YPO1383
STM0973
STM3241
VC1866
HI0180
PM0075

>COG1884 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1288a
AF2215
VNG0481G
VNG0653G
Ta0462
TVN0772
PH1306
PAB1800
SSO2425
APE1687
DR1084_1
DR1189
Cgl1492_1
Rv1493_1
MT1535
MT1540_1
ML1799_1
BH2955_1
BH3796_3
sbm_1
Zsbm_1
ECs3787_1
RSc0237_3
AGl2498_1
SMb20757_1
BMEI0799_1
mll7619_1
CC2374_1
CC3081_1
CLUSTER 2
Cgl1493_1
Rv1492_1
MT1539_1
ML1800_1
BH2956_1
mll7621
CC2373

>COG1886 (Putative duplication confidence score 1.000)
CLUSTER 1
aq_1539
TM0680a
CAC2215_2
lin0701
lin0706
lin0708_2
BS_fliY_2
BH2445_2
fliN
Z4190
ZfliN
ECs2685
ECs3726
YPCD1.43
YPO0269
YPO0710
YPO1822
STM1418
STM1977
STM2891
BU081
VC2125
PA1444
PA1694
RSp0377
RSp0861
HP0584
HP1030_2
jhp0394_2
jhp0531
Cj0059c_2
Cj0351
AGc988
SMc03020
BMEII1112
mll2902
mlr6344
CC0908
CC2175
CT672
CPn0704
TP0720_2
BB0277
CLUSTER 2
ZsepQ
ECs4565

>COG1900 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1186_1
MA1821_1
MTH855_1
MJ0100_1
MK0907_1
slr0689
all1701
CLUSTER 2
MA3299_1
MTH1684_1
MJ1681_1
MK0358_1

>COG1908 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0662_2
CLUSTER 2
AF1238_2
AF1374
MA2868_2
MTH1136
MTH1138
MJ1190a
MK0268
MK0627

>COG1913 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0330
VNG2610C
MJ0281
MK0548
PH1820
PAB2097
PAE1990
SSO0689
APE0147
aq_459
CLUSTER 2
PH1784
PAB2114

>COG1929 (Putative duplication confidence score 1.000)
CLUSTER 1
CAC2834
Cgl1847
Cgl2028
Rv2205c
MT2261
L79277
SPy1903
SP1126
SA2220
lin2965
BS_yxaA
BH0555
slr1840
ybbZ
yhaD
ZybbZ
ZyhaD
ECs0576
ECs4002
YPO3980
STM0525
STM2492
STM2959
STM3247
VCA0903
PA1052
HI0091
PM1741
NMB1268
NMA1473
CLUSTER 2
SA0697

>COG1940 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1968
VNG2629G
Ta0825
TVN0728
PAE3437
APE2091
aq_1496
TM0032
TM0110
TM0393
TM0411
TM0808
TM1224
TM1469
TM1847
FN0790
FN1164
FN1474
DR0823
DR2296
CAC0933
CAC1086
CAC1523
CAC2613
CAC3673
Cgl0009
Cgl0122
Cgl1864
Cgl2137
Cgl2595
Rv0485
Rv0650
Rv2702
MT0503
MT0679
MT2776
ML1023
L117718
L118696
L84096
SPy0258
SPy1529
SPy1596
SPy1811
SP0171
SP0473
SP0668
SP1324
SP1675
SP1721
SP2142
SA0041
SA0305
SA1377
lin0031
lin0217
lin0520
lin0770
lin0809
lin1376
lin2907
lin2928
BS_glcK
BS_xylR
BS_ydhR
BH0700
BH0786
BH0797
BH1094
BH1425
BH2758
slr0329
all1371
all5002
alr1982
alsK
mlc
nagC
nanK
yajF
ycfX
yphH
Zmlc
ZnagC
ZyajF
ZycfX
ZyhcI
ZyphH
ECs0444
ECs0706
ECs1497
ECs2300
ECs3416
ECs4095
YPO1629
YPO1891
YPO2036
YPO2268
YPO2625
YPO3020
YPO3211
STM0393
STM0682
STM1220
STM1488
STM3336
STM3681
VC0270
VC0993
VC1532
VC1782
VC2007
HI0144
HI0182
PM0642
PM0675
PM0683
PM1375
PM1712
AGc4728
AGc93
AGl1298
AGl2504
AGl3149
AGl3541
AGl455
AGl592
AGl609
AGl95
SMa2004
SMa2303
SMb20901
SMb21222
SMc02172
SMc02470
SMc02880
SMc03109
SMc03816
SMc03817
BMEII0106
BMEII0857_2
mll3638
mll7583
mll8569
mlr3412
mlr3714
mlr4209
mlr7234
CC1134
CC1792
CC2465
BB0693
BB0831
MYPU_2280
CLUSTER 2
SMb20465

>COG1941 (Putative duplication confidence score 0.750)
CLUSTER 1
AF1373
MTH1135
MJ1191
MK0179
MK0267
PH1292
PAB0640
PAB1786
sll1224
alr0764
CLUSTER 2
MA0977
MTH1298
MJ0031
MJ0726
MK0538
MK0930

>COG1943 (Putative duplication confidence score 1.000)
CLUSTER 1
VNG0043H
VNG0285C
VNG2653C
VNG6182H
MA0257
MA3362
Ta0474
TVN0469
TVN0750
TVN0843
SSO1474
SSO9043
TM0048
TM0777
TM1832
FN1675
FN1677
DR0177
DR0667
DR0979
DR1382
DR1592
DR1652
DR1927
DR1932
DR2323
CAC3531
MT3204
SP1064
SP1622
BH0176
BH0269
BH1642
BH1895
BH2842
BH3233
BH3466
BH3478
all2167
all3371
alr1015
alr1685
alr4734
alr7009
alr7086
alr7149
alr8071
asl7246
yafM
Z5815
ZyafM
ECs0255
ECs3277
ECs5182
YPMT1.37c
YPO0018
YPO0094
YPO0204
YPO0300
YPO0356
YPO0479
YPO0487
YPO0534
YPO0541
YPO0583
YPO0696
YPO0697
YPO0726
YPO0925
YPO1036
YPO1099
YPO1164
YPO1173
YPO1223
YPO1263
YPO1369
YPO1406
YPO1424
YPO1434
YPO1521
YPO1592
YPO1602
YPO1609
YPO1794
YPO2023
YPO2033
YPO2121
YPO2311
YPO2343
YPO2353
YPO2395
YPO2629
YPO2764
YPO2826
YPO2869
YPO2900
YPO2917
YPO2928
YPO2985
YPO2996
YPO3060
YPO3072
YPO3178
YPO3187
YPO3195
YPO3280
YPO3291
YPO3299
YPO3329
YPO3416
YPO3433
YPO3535
YPO3567
YPO3642
YPO3745
YPO3764
YPO3810
YPO3853
YPO3968
PSLT036
STM0946
STM1957
STM2471
STM3032
STM3479
STM4311
VC0870
VCA0202
VCA0275
VCA0493
PA1154
HI0217
HI0554
NMB1464
NMA0532
NMA1155
NMA1675
RSc2966
HP0414
HP0437
HP0988
HP0998
HP1008
HP1096
HP1535
jhp0827
mll6832
mll6834
mll6836
msl6830
msl6833
CC1445
CLUSTER 2
all4950

>COG1951 (Putative duplication confidence score 0.667)
CLUSTER 1
AF1099
MA2497
MTH1735
MTH963
MJ1294
MK0085
PH1683
PAB2030
PAE2132
aq_1780
TM0540
CAC3091
BH0894_1
ttdA
ZttdA
ECs3944
STM0762
STM3355
VC1304_1
PA4333_1
XF1855_1
NMB1613_1
NMA1812_1
RSc1955_1
mlr6099_1
CLUSTER 2
fumA_1
fumB_1
Z0887_1
ZfumA_1
ZfumB_1
ECs0757_1
ECs2318_1
ECs5104_1
YPO3335_1
STM1468_1
STM4300_1
BMEI1016_1

>COG1971 (Putative duplication confidence score 1.000)
CLUSTER 1
MA3749
MTH1812
FN1615
CAC0950
Cgl1434
BS_ywlD
BH3770
yebN
Z2864
ECs2531
YPO1754
STM1834
PA2910
XF2257
NMB0215
NMA0052
Cj0167c
CLUSTER 2
CAC0130
CAC0325
BS_ytaF
BH3151

>COG1972 (Putative duplication confidence score 0.714)
CLUSTER 1
SPy1868
BS_yutK
BH1446
all0378
yeiJ
yeiM
ZyeiJ
ZyeiM
ECs3053
ECs3056
YPO0435
VC1953
VC2352
VCA0179
HI0519
PM1292
HP1180
jhp1106
CC2089
CLUSTER 2
SA0302
SA0479
SA0600
BS_nupC
BS_yxjA
nupC
ZnupC
ECs3272
YPO2983
STM2409

>COG1997 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0057
VNG0239C
MA1775
MTH681
MJ0593
MK0379
Ta1295
TVN0309
PHS057
PAB7067
PAE2202
SSO6418
APES054
YJR094w-a
YPR043w
SPBC800.04c
SPBC83.02c
ECU07g1005
CLUSTER 2
MA4142

>COG2003 (Putative duplication confidence score 1.000)
CLUSTER 1
MA1979
aq_1610
TM1557
FN0909
CAC1241
L0306
SPy1118
SP1088
SA0053
SA1485
lin1584
BS_ysxA
BH3032
sll0766
alr2351
radC
yeeS
yfjY
ykfG
Z1217
Z1657
ZradC
ECs1403
ECs2803
ECs4513
YPO0049
STM3729
VC0217
VC0510
VC1786
PA5319
HI0952
PM1152
XF0148
NMB1038
NMA1448
RSc2444
RSc2620
AGc2959
SMc00299
BMEI0718
mlr0956
msr1029
RC1278
CLUSTER 2
RC1277

>COG2006 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1306
MA0628_1
MA1031_1
MTH772_1
TM0049_1
sll1697
alr3725
CLUSTER 2
AF2235
MA1433

>COG2007 (Putative duplication confidence score 1.000)
CLUSTER 1
AF2152
VNG1668G
MA0923
MTH207
MJ0673
MK1545
Ta1040
TVN0555
PH1103
PAB0749
PAE3331
SSO0164
APE0789
YBL072c
YER102w
SPAC2C4.16c
SPAC521.05
ECU02g0880
CLUSTER 2
YER126c
SPCP1E11.08
ECU11g0810

>COG2010 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0190_2
MA0167
DR0343_2
DR0429_2
DR2095_2
DRA0275
Cgl2143
Rv2194
MT2250
ML0881
BS_cccA
BS_cccB
BS_qcrC_2
BH1378
BH1674_2
BH3603
sll1245
sll1796
all0161
all1365
alr4251
asl0256
VC1439
PA0105_2
PA0509_1
PA0517
PA0519_1
PA0523
PA1552
PA1555
PA1600
PA1734
PA1983
PA2266
PA4571_1
PA4619
PA5248_1
NMB0717
NMB1723
NMA0925
NMA1977
RSc0362_2
RSc0772
RSc1279
RSc3154
RSp0989
RSp1503_2
HP0147
jhp0135
Cj1487c
AGc1609
AGc2829
AGl954
SMa0118
SMa0617
SMa0769
SMa1099
SMa1104
SMa1113
SMa1170
SMa1213
SMa1276
SMb20174
SMb20402
SMc00086
SMc04048
BMEI1566
BMEII0999
mll6628
mll9632
mlr6414
mlr7639
CC1090
CC1404
CC1696
CC2792
CC2970
CLUSTER 2
DR0434

>COG2013 (Putative duplication confidence score 0.750)
CLUSTER 1
AF0626
VNG1609C
VNG2631H
MA2615
MA4652
MTH747
Ta0740
TVN1405
PAB2205
SSO1755
APE2139
TM0367
DR0368
DR2216
CAC0556
CAC1537
CAC2738
L178908
SPy0238
slr1570
slr1571
slr1572
PA3696
mlr0194
CC1115
CLUSTER 2
VNG0533H
MA1825
MK0909
DR0625

>COG2025 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0287
VNG2151G
Ta0212
Ta0329
Ta0429_2
TVN1281
TVN1382
PAE0721
PAE3587
SSO2762
SSO2817_2
APE0135
APE2419
YPR004c
SPAC27D7.06
TM1531
FN0785
FN1424_2
FN1533
DR0970
CAC2543_2
CAC2709
Cgl1202
Rv3028c
MT3112
ML1711
BS_etfA
BH3099
fixB
ydiR
ZfixB
ZydiR
ECs0045
ECs2405
STM0076
STM0856
STM1353
PA2951
PA5400
XF0253
NMB2154
NMA0241
RSc0924
RSp0060
AGl2462
SMa0819
SMa1389
SMc00728
BMEI0097
mll5861
mlr3488
CC0726
CLUSTER 2
ygcQ
Z4079
Z4080
ECs3624
ECs3625

>COG2030 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0198
AF1124
AF1933
AF2313
VNG0626G
VNG1349Cm
VNG2290G
SSO1154
SSO3136
YKL182w_3
YKR009c_2
SPAC926.09c_3
FN0816
DR1239
DR2381_2
DRA0199
Cgl0289
Cgl0813_3
Cgl2444_3
Rv0130
Rv0216
Rv0241c
Rv0636
Rv2499c
Rv2524c_3
Rv3389c
Rv3538
MT0138
MT0226
MT0255
MT0665
MT2574
MT2600_3
MT3496
MT3642
ML1191_3
ML1909
ML2566
ML2627
SA0037
BS_ydeM
maoC_2
YPO1927
STM3119
VCA0808
PA1018
PA3302
PA4015
PA4788
RSc2042
RSc2043
RSp1120
AGc4066
AGc4068
AGl1567
SMa0874
SMb20978
SMb21110
SMb21635_2
SMc02696
SMc02697
SMc03927
BMEI0477
BMEI0478
BMEII0328
mll1143
mll6685
mll7145
mll7159
mlr0905
mlr2698
mlr2699
mlr3097
msl6009m
CC0704
CC0942
CC3498
CC3656
CLUSTER 2
RSc0535

>COG2031 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1538
APE2381m
FN1858
Cgl1143
SPy0137
BH0358
atoE
PA2002
HI0772
HP0693
jhp0635
CLUSTER 2
Cgl1142_2

>COG2036 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0337
AF1493
VNG0134G
MA0672
MTH1696
MTH254
MTH821
MJ0168
MJ0932
MJ1258
MJ1647
MJECL29
MK0506
MK0743
MK1677
PHS046
PHS051
PAB3089
PAB3117
YBL021c
SPAC23C11.08
SPBC800.13_2
ECU10g0260
CLUSTER 2
YBR009c
YBR010w
YKL049c
YNL030w
YNL031c
SPAC1834.03c
SPAC1834.04
SPBC1105.11c
SPBC1105.12
SPBC1105.17
SPBC8D2.03c
SPBC8D2.04
SPBPI060
SPBPI061
ECU03g1460
ECU09g0440
ECU09g0450

>COG2037 (Putative duplication confidence score 1.000)
CLUSTER 1
AF2073
MTH403
MK0816
CLUSTER 2
AF2207
MA0010
MTH1259
MJ0318
MK0116

>COG2043 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0180
CLUSTER 2
AF0908
AF1313
AF2126
MA0089
MA0921
MA1972
MA4240
MTH1364
MTH1418
MTH469
MTH526
MJ0308
MK0575

>COG2048 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0271_2
AF1375
MA3126
MA4237
MTH1879
MJ0743
MJ0863
MK0572
SSO1135
SSO2358
aq_400
slr0201
all3341
Cj0439
CLUSTER 2
SSO1129
aq_392
aq_394

>COG2055 (Putative duplication confidence score 0.500)
CLUSTER 1
MTH1205
MJ1425
MK0392
PH1277
PAB1791
CAC0566
Cgl0641
BS_yjmC
ybiC
ylbC
ZybiC
ZylbC
ECs0579
ECs0879
STM0528
STM3081
PA1252
AGc268
AGl3209
AGl410
SMa0265
SMa1459
SMb20261
SMc02035
BMEII1005
mll5197
mlr9117
mlr9216
CLUSTER 2
yiaK
STM3668
HI1031
PM1256

>COG2057 (Putative duplication confidence score 0.571)
CLUSTER 1
SSO1085
FN0203
Rv3552
MT3656
PA0227
SMb20588
mll4181
CLUSTER 2
FN0273
FN1856
DRA0054_2
DRA0067
CAP0164
Cgl2338
Rv2503c
MT2578
SPy0142
SPy1639
BS_yodR
BS_yxjE
BH2258
atoA
PA2000
HI0773
RSc1571
RSc2253
HP0692
jhp0636
AGl642
BMEII0645
CC0207
CC2406
RC0906

>COG2064 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0658
AF0995
VNG0822C
MA0233
MA3097
MA3976
MTH1703
MTH980
MJ0779
MJ0780
MJ1286
MK0705
MK0706
Ta0902
Ta0903
TVN1013
TVN1014
PH0653
PH0654
PAB1458
PAB1459
PAE0772
PAE2779
SSO0119
SSO2386
SSO2679
APE2206
APE2207
CAC1978
Cgl0303
Rv3657c
YPO0688
PA4300
PM0847
RSc0650
RSp1083
AGc371
SMa1562
SMc02822
mll0893
mlr5604
mlr6486
CC2940
CLUSTER 2
MA3098

>COG2066 (Putative duplication confidence score 0.500)
CLUSTER 1
FN1397
Cgl2430
BS_ybgJ
BS_ylaM
BH2627
BH2717
all2934
ybaS
yneH
ZybaS
ZyneH
ECs0538
ECs2131
YPO0949
YPO1939
STM1525
VC0454
PA1638
RSp1143
AGc3412
SMc00486
BMEII0907
BMEII0908
mlr0211
CC0276
CLUSTER 2
slr2079
all4774

>COG2070 (Putative duplication confidence score 1.000)
CLUSTER 1
AF2173
YJR149w
aq_159
TM0800
FN0174
FN0664
DR2545
CAC3576
CAC3580
Cgl0912
Rv0021c
Rv1533
Rv1894c
Rv2781c
Rv3553
MT0024
MT1944
MT2851
MT3657
L28502
SPy1751
SP0419
SA0781
lin0810
lin2273
BS_yrpB
BH0210
BH1205
BH2639
all3741
PA0660
PA1024
PA4202
XF0121
NMB1452
NMA1666
RSc0114
RSc0255
RSp0307
RSp0316
HP0773
jhp0710
Cj1270c
AGc729
SMc02150
BMEII0460
CC1570
CC2372
CC2990
CC3379
CLUSTER 2
BS_pksE_2
all1642
alr5356

>COG2071 (Putative duplication confidence score 1.000)
CLUSTER 1
SPBPB2B2.05
FN0218
FN0505
CAC1764
Rv2859c
MT2927
ML1573
L120396
SPy1119
SP1089
SP2072
lin1909
ycjL
ZycjL
ECs1875
PA0297
Cj1417c
AGl2905
SMc03943
BMEII0314
mll5165
mll8760
CC3133
RP404
RC0552
CLUSTER 2
RP713

>COG2073 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0725
VNG1554G
MTH1408
MJ1144
MK1518
Ta0660_1
TVN0916_1
PAE0339
SSO2297
FN0952
CAC1370
lin1161
slr0969_1
all0453_1
all2747
STM2028
PA2903_1
PA2947
RSp0619
AGc5076
SMc04285
BMEI0700
BMEI0712_1
mlr1384
CLUSTER 2
SSO0129

>COG2075 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0766
VNG1159G
MA1523
MTH257
MJ1201
MK1444
Ta1114
TVN0451
PH1495a
PAB8165
PAE3345
SSO5478
APES070
YLR009w
SPAC22E12.13c
ECU02g0810
CLUSTER 2
YGL031c
YGR148c
SPAC6G9.09c
SPCC330.14c
ECU07g0930

>COG2076 (Putative duplication confidence score 1.000)
CLUSTER 1
VNG1886a
MA1348
DR1004
DR1005
CAC3666
Rv3065
MT3150.1
ML1756
L124677
lin0846
lin0847
BS_ebrA
BS_ebrB
BS_ykkC
BS_ykkD
BS_yvaE
BS_yvdR
BS_yvdS
BH0685
BH0686
BH0840
BH0841
all0285
emrE
sugE
ydgE
ydgF
Z1870
Z2593
Z2594
ZsugE
ECs1614
ECs2305
ECs2306
ECs5129
YPO0355
YPO2068
YPO2069
YPO2333
STM1482
STM1483
STM1653
STM4338
VC1393
PA0786
PA1540
PA1541
PA1882
PA3265
PA4990
NMB0393
NMA2091
Cj0309c
Cj0310c
Cj1173
Cj1174
AGc4218
SMc01178
SMc01179
SMc01278
SMc01523
BMEI1045
mlr4864
CC3443
CLUSTER 2
mll9408

>COG2077 (Putative duplication confidence score 1.000)
CLUSTER 1
aq_488
CAC3306
Cgl1062
Rv1932
MT1982
L101699
SP1651
SA1535
lin1625
BS_ytgI
BH3194
tpx
Ztpx
ECs1903
YPO2342
STM1682
VC0824
PA2532
HI0751
PM0820
RSc2790
HP0390
jhp0991
Cj0779
MYPU_7080
CLUSTER 2
STM1667

>COG2081 (Putative duplication confidence score 1.000)
CLUSTER 1
CAC1849
CAC3590
L56208
SPy1866
SP0741
SA1576
lin2032
BS_ytfP
BH3279
sll0586
all4556
yhiN
ZyhiN
ECs4364
YPO3966
STM3588
VC0080
PA0559
HI0933
PM0031
RSc2218
AGc1070
SMc00763
BMEI0614
CC1477
CLUSTER 2
PA3949
RSc3158
AGl1622
SMb20319
BMEI0946
CC0638

>COG2082 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0724_2
VNG1567G
MA4258
MTH227
MJ0930
MK1196
Ta0654
TVN0922
PAE0343_2
SSO2308_2
FN0970
CAC1376
Rv2065
MT2125
lin1156
sll0916
slr1467
all0456
all2544
STM2033
PA2905
RSp0623_2
AGc5081
SMc03192
BMEI0714
mlr1379
CLUSTER 2
sll0794_2
alr3162_2

>COG2084 (Putative duplication confidence score 0.500)
CLUSTER 1
MA0614
Ta0161
TVN0231
PAE1145
PAE2977
SSO0974
SSO1560
APE0756
aq_038
DR0499
CAC3342
Rv0751c
Rv0770
MT0771
MT0775
MT0794
L81616
lin1004
BS_yfjR
BS_ykwC
BH2634
slr0229
alr3358
ybbQ
ygbJ
yhaE
yihU
ZybbQ
ZyhaE
ZyihU
ECs0570
ECs4003
ECs4805
YPO3648
STM0519
STM2918
STM3248
STM4023
VCA0007
PA0743
PA1500
PA1576
PA2199
PA3312
PA3569
HI1010
PM1366
NMB1584
NMA1773
RSc2429
RSc3283
RSp0649
jhp0585
AGc4961
AGl1448
AGl1542
AGl3303
AGpA234
SMa0237
SMa0516
SMb20668
SMb20679
SMb20710
SMb20751
SMc00133
SMc00274
SMc01572
BMEI0688
BMEI1024
BMEII1090
mlr0254
mlr0552
mlr1203
mlr1689
mlr2606
CC1354
CC1574
CLUSTER 2
MTH1747
SMc00501

>COG2086 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0286
VNG2150G
Ta0211m
Ta0328
Ta0429_1
TVN1280
TVN1383
PAE0722
PAE3586
SSO2763
SSO2817_1
APE0134
APE2418
YGR207c
SPAC1805.02c
TM1530
FN0784
FN1534
DR0971
CAC2544
CAC2710
Cgl1201
Rv3029c
MT3113
ML1712
BS_etfB
BH3100
fixA
ydiQ
ZfixA
ZydiQ
ECs0044
ECs2404
STM0075
STM0855
STM1354
PA2952
XF0254
NMB2155
NMA0242
RSc0923
AGl2463
SMa0822
SMa1391
SMc00729
BMEI0096
mll5862
mlr3487
CC0727
CLUSTER 2
ygcR
ZygcR
ECs3626
PA5401
RSp0061

>COG2087 (Putative duplication confidence score 1.000)
CLUSTER 1
FN0913
DRA0020
CAC1383
Cgl2151
Rv0254c
MT0267
lin1111
BH1590
slr0216
all3174
cobU
ZcobU
ECs2788
STM2018
VC1239
PA1278
RSc2391
AGc2839
SMc04305
BMEI0693
mll1308
CLUSTER 2
BH1594

>COG2091 (Putative duplication confidence score 1.000)
CLUSTER 1
YGL154c
SPAC17C9.02c
CAC1329
CAC2006
SA0174
BS_sfpm
BH1852
slr0495
all5359
yhhU
Z4867
ECs4342
STM3583
HI0152
PM0116
XF1934
RSc1804_3
RSp0163
CLUSTER 2
yieE
ZyieE
ECs4649
STM3849

>COG2095 (Putative duplication confidence score 1.000)
CLUSTER 1
AF2111
MA3411
MJ0972
MJ1677
MK1198
Ta0019
Ta1070
TVN0065
TVN0525
PH0214
PH0760
PAB0863
PAB2220
PAE0791
PAE0942
PAE0943
SSO0607
APE2497
aq_540
DR2343
BS_yvbG
all2000
marC
ychE
yhgN
ZychE
ZydeB
ZyhgN
ECs1742
ECs2136
ECs4279
YPO2181
YPO2437
YPO3950
STM1521
STM1748
BU267
BU449
VC2035
PA4857
PA5205
PA5486
PM0044
PM1581
XF2666
NMB1354
NMA1566
RSc2813
RSc2949
Cj1111c
AGc2781
SMa1096
SMc01232
BMEI0403
BMEI0883
mlr0740
CC0106
CC1662
CT852
CT853
CPn1010
CPn1011
TP0988
CLUSTER 2
STM3540

>COG2102 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0720
PH0375
PAB0415
PAE0374
APE2042
CLUSTER 2
AF1666
VNG0391C
MA1374
MTH432
MJ0570
MK0644
Ta0525
TVN1001
PH1257
PAB0759
PAE2672
SSO0678
APE0421
YLR143w_1
SPBC577.12_1
ECU08g1840

>COG2110 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1521
MA1614
MK0950
Ta1105
TVN0719
PH1513
PAB0445
PAE1111
SSO2899
APE1648
YBR022w
aq_987
TM0508_2
FN1951
DR2288
Rv1899c_2
MT1950_2
SPy1216_2
SA0314
lin2902
ymdB
Z1679
ECs1423
STM1147
STM1868_1
STM2587
PA1746
PA3693
RSc0334
mll3540
mll7730
CLUSTER 2
Rv0060
MT0066

>COG2111 (Putative duplication confidence score 0.800)
CLUSTER 1
VNG0564H
MA4665
MTH1243
MJ1307
PH0942
PH1429
PH1454
PAB0805
PAB1399
PAB1886
PAB2415
TM1110
TM1209
DR0881
SA0579
SA0812
lin2478
BS_yufU
BH1318
slr2012
all1837
VCA0157_2
AGc1660
SMc00052
RP267_2
RC0355_2
CLUSTER 2
VNG0566C
MA4572_2
MTH1244
PH0943
PAB0804
DR0880_2
Cgl0270_2
Cgl2672_2
SA0578_2
SA0813_2
lin2477_2
BS_shaA_2
BH1319_2
PA1054_2
AGc1658_2
AGc903_2
SMc00051_2
SMc03179_2
BMEII0770_2

>COG2113 (Putative duplication confidence score 0.500)
CLUSTER 1
MA2147
L72477_2
SPy0184_2
pli0045
proX
ZproX
ECs3542
YPO2645
STM2811
PA0030
PA3236
PA5096
PA5103
PA5378
PA5388
RSp0064
AGc1631
AGc3730
AGc4148
AGl1618
AGl1793
AGl2067
AGl470
AGpA305
SMa1729
SMb20410
SMb21572
SMc00672
SMc02378
SMc02737
SMc04311
SMc04341
BMEI0441
BMEII0550
mll2746
mll7332
mlr1996
BB0144
CLUSTER 2
lin1015
BS_opuAC

>COG2116 (Putative duplication confidence score 0.800)
CLUSTER 1
MK0314
YHL008c
FN1141
CAC1512
L195318
SPy1424
SP1215
SA0293
SA2191
lin0602
lin0912
BS_yrhG
BS_ywcJ
focA
focB
nirCm
ZfocA
ZfocB
ZnirCm
ECs0987
ECs3354
ECs4218
YPO0159
YPO1384
STM0974
STM3476
VC1695
VCA0540_1
HI0181
PM0074
CLUSTER 2
yfdC
ZyfdC
ECs3230
STM2393
PA2777

>COG2123 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0494
MA1776
MTH682
MK0380
Ta1294m
TVN0308
PH1548
PAB0421
PAE2206
SSO0732
APE1445
YDR280w
SPBC17D1.03c
SPCC757.08
ECU06g0390
CLUSTER 2
YDL111c
SPBC16G5.10

>COG2130 (Putative duplication confidence score 1.000)
CLUSTER 1
VNG0815G
YML131w
SPAPB24D3.08c
SA1989
BS_yfmJ
all1188
yncB
ZyncB
ECs2053
STM1589
PA1648
PA2197
RSc1766
mlr6843
CC2016
CLUSTER 2
all5008

>COG2144 (Putative duplication confidence score 1.000)
CLUSTER 1
MA4193
MTH1864
MJ0640
MK0795
sll0787
CLUSTER 2
MJ0799
MK0889
MK1558

>COG2148 (Putative duplication confidence score 1.000)
CLUSTER 1
VNG0011C
TM0632
FN1695
DRA0034
CAC2330
CAC3059
CAC3073
Cgl0348
SP0350
SP1838
SA0124
SA0156
BS_tuaA
BS_yvfC
BH3650
BH3716
sll1535
slr0820
all2285_2
all2854
all4160_2
all4420
all4719
all4829
alr4823
wcaJ
ZwcaJ
ECs2852
STM2082
STM2103
VC0263
VC0934
PA2231
HI0872
PM1011
XF2367
NMB1820_1
NMA0639_1
RSp1008
Cj1124c
AGc157
AGc2280
AGl2989
SMb20946
SMb21071
SMb21246
SMc01792
BMEI1177
mll5252
mll8435
mlr6766
mlr7570
CC0166
CC1486
CC2384
CC2425
CLUSTER 2
alr2834

>COG2150 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1020
VNG2296C
MA1396
MTH1654
Ta1106
TVN0456
PH1554
PAB2435
CLUSTER 2
Ta0033
TVN0041
PH0306
PAB1089

>COG2163 (Putative duplication confidence score 1.000)
CLUSTER 1
MTH31
MJ0657
MK0833
PH1265a
PAB7290
PAE0862
SSO5763
APE0976
YHL001w
YKL006w
YLR448w
YML073c
SPAC1805.13
SPCC622.18
ECU04g0330
ECU08g1780
CAC3110
BH0157
CLUSTER 2
YDR471w
YHR010w
SPBC685.07c
SPCC74.05

>COG2172 (Putative duplication confidence score 1.000)
CLUSTER 1
TM0733
TM1354_2
DRB0026
DRB0027_1
DRB0028_1
CAC2307
Rv1364c_3
MT1410_3
SA1870
lin0890
lin0893
BS_rsbT
BS_rsbW
BS_spoIIAB
BH0525
BH0528
BH1537
sll1968
slr1861
all1702
all2284
alr3423
alr3655
alr3760
CT549
CPn0670
CLUSTER 2
Rv3287c
MT3386

>COG2181 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0501
AF0546
PAE2614
Cgl1160
Rv1164
Rv1736c_3
MT1201
MT1778_3
SA2182
BS_narI
narI
narV
ZnarI
ZnarV
ECs1732
ECs2068
STM1580
STM1761
PA3872
RSp0977
BMEII0953
CLUSTER 2
AF0545

>COG2185 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1288b
AF2219
VNG0673G
VNG2286G
Ta0463
TVN0773
PH0275
PAB2187
SSO2266
APE1686
FN1853
DR1084_2
DR2032
Cgl1492_2
Rv1493_2
MT1540_2
ML1799_2
BH2955_2
BH3796_1
sbm_2
Z0895
Zsbm_2
ECs0764
ECs3787_2
RSc0237_1
AGl2498_2
SMb20757_2
BMEI0799_2
mll7619_2
CC2374_2
CC3081_2
CLUSTER 2
Cgl1493_2
Rv1492_2
MT1539_2
ML1800_2
BH2956_2

>COG2191 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0177
AF0433_2
MA0381
MA4602
MTH1345
Ta1109
TVN0676
PH1238
PAB0675
DRA0267
CLUSTER 2
MA0304
MTH917

>COG2192 (Putative duplication confidence score 1.000)
CLUSTER 1
MJ1051
MJ1058
MK0097
PH1253
PAB1612
DRC0037
sll1178
PA2069
PA5005
RSp0788
RSp1491
SMb20472
mlr6171
CLUSTER 2
RSp1487

>COG2193 (Putative duplication confidence score 0.500)
CLUSTER 1
Rv1876
MT1925
ML2038
sll1341
slr1890
bfr
Z4695
ECs4189
YPO0206
STM3443
VC0365
PA3531
PA4235
XF0395
NMB1206
NMB1207
NMA1376
NMA1377
RSc0350
AGc5028
SMc03786
BMEII0704
mlr5526
CC3262
CLUSTER 2
all3940
PA4880

>COG2198 (Putative duplication confidence score 1.000)
CLUSTER 1
YDL235c
SPBC725.02
sll0043_1
sll1905_6
slr0073_1
slr1759_7
slr2098_6
slr2104_5
all2875_6
all5174_2
alr2279_5
alr2428_2
alr3761_7
arcB_3
barA_4
evgS_4
torS_3
ZarcB_3
ZbarA_4
ZevgS_4
ZtorS_3
ECs1148_3
ECs3249_4
ECs3646_4
ECs4089_3
YPO3381_4
YPO3555_3
STM2958_4
STM3328_3
STM3826_3
VC1080
VC1349_5
VC1653_4
VC2038_2
VC2369_3
VC2453_4
VCA0709_3
PA0033
PA0928_4
PA0991
PA3044_5
PA3345
PA3946_5
PA4112_5
HI0219a_2
HI1651
PM0313_3
mll6695
CLUSTER 2
yojN_2
ZyojN_2
ECs3105_2
STM2269_2

>COG2201 (Putative duplication confidence score 0.500)
CLUSTER 1
AF1041
VNG0973G
MA0015
MA1989_1
MA3067
MA3542_1
PH0483
PAB1331
TM0408
CAC2222
BS_cheB
BH2435
all1716_1
all1847
cheB
ZcheB
ECs2593
YPO1679
STM1917
VC1401
VC2062
PA0173
PA1459
PA3703
RSp1403
Cj0924c
AGc916
SMa1561
SMb20514
SMb20515_1
SMc03010
mll9510
CC0436
CC0597
TP0631
BB0415
BB0568
CLUSTER 2
PA0414
XF1951

>COG2213 (Putative duplication confidence score 0.500)
CLUSTER 1
CAC0154
SP0394
SA1960
lin2931
BS_mtlA_1
BH3854
cmtA
mtlA_1
ZcmtA
ZmtlA_1
ECs3808
ECs4475_1
YPO4068_1
STM3685_1
BU572_1
VCA1045_1
PM1061_1
MYPU_7520
CLUSTER 2
MYPU_7510
MPN651

>COG2218 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1931
MA0307
MA0832
MA4176
MTH1558
MTH918_1
MJ1171
MK1530
CLUSTER 2
MTH238
MJ0658

>COG2224 (Putative duplication confidence score 0.500)
CLUSTER 1
SSO1333
YER065c
YPR006c
SPBC1683.11c
DR0828
Cgl2279
Rv0467
Rv1915
MT0483
MT1966
BH2677
aceA
ZaceA
ECs4933
YPO3725
STM4184
VC0736
PA2634
RSc1358
AGc1079
SMc00768
BMEI0409
mll6527
CC1764
CLUSTER 2
Rv1916
ML1985

>COG2226 (Putative duplication confidence score 1.000)
CLUSTER 1
MA2333
MA2408
MA3655
MA4347
Ta0801
TVN1030
PAE2338
SSO1808
YML110c
SPCC4G3.04c
aq_338
TM0753
FN1543
DR2405
Cgl0464
Rv0558
MT0584
ML2273
SA1303
lin2045
BS_gerCB
BH1649
sll1653
slr0407
all0538
alr5252
ubiE
ZubiE
ECs4763
YPO3781
STM3970
VC0083
PA5063
PM1686
XF1487
NMB0743
NMA0956
RSc0458
HP1483
jhp1376
Cj0324
AGc559
SMc01155
BMEII0233
mlr3165
CC3708
RP680
RC1037
CT428
CPn0515
CLUSTER 2
SMb20449
mll6702

>COG2233 (Putative duplication confidence score 1.000)
CLUSTER 1
PAB1838
SPAC1399.01c
TM0819
FN0888
DR2280
DRA0176
CAC0872
CAC2112
Cgl1894
Cgl2307_1
L160092
L46118
SPy0831
SPy1137
SP1286
SP1848
SA0374
SA1042
lin1953
lin1997
BS_pbuX
BS_pyrP
BS_yunJ
BS_yunK
BH2540
uraA
ycdG
ygfO
ygfU
yicE
ZuraA
ZycdG
ZygfO
ZygfU
ZyicE
ECs1252
ECs3359
ECs3755
ECs3760
ECs4530
YPO0034
STM2497
STM3631
STM3747
VC2171
VC2712
PA0166
PA0352
PA1507
PA2938
PA4647
HI1227
PM0018
NMB0930
NMB1315
NMA1126
NMA1528
RSc2118
AGl3468
SMb20134
SMb20289
SMc02512
SMc02513
BMEII0825
CLUSTER 2
BS_ywdJ
ybbY
ZybbY
ECs0575
STM0524

>COG2239 (Putative duplication confidence score 1.000)
CLUSTER 1
MTH620
TM1161
FN1480
CAC0684
Cgl0225
Rv0362
MT0378
SA0867
BS_ykoK
BH0511
BH1947
BH1948
BH3224
slr1216
all1682
all5184
YPO2839
VC1655
VC2534
VCA0818
PA0913
XF1400
XF1401
NMB1999
NMA0442
AGc1836
AGc2851
SMc01261
BMEII0418
mll1318
mlr0521
CC2174
RP583
RC0886
CT194
CPn0286
TP0917
BB0380
UU009
MYPU_4080
CLUSTER 2
Cgl1101
Rv1232c
MT1270

>COG2243 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0727
VNG1551G
MA4262
MTH1348
MJ0771
MK1038
Ta0658
TVN0918
PAE0348
SSO2301
FN0959
CAC1379
Rv2066_1
MT2126_1
lin1166
slr1879
all0455
STM2024
PA2904
RSp0621
AGc5080
SMc03191
BMEI0713
mlr1380
CLUSTER 2
SMc03194
mlr1461

>COG2247 (Putative duplication confidence score 0.667)
CLUSTER 1
MJ0755
PH1673
PH1674
PAB0336
PAB0337
CLUSTER 2
PH0614_1
PAB0953_1
BS_lytB_1
BS_lytC_1

>COG2249 (Putative duplication confidence score 0.571)
CLUSTER 1
MA0147
MA0326
FN1233
CAC0018
lin1898
lin1903
BS_ydeQ
BS_yrkL
BS_ywrO
BH2748
BH3885
yabF
ycaK
yheR
ZyabF
ZyheR
ECs0049
ECs4202
YPO0190
STM0085
STM3458
VC2607
PA0853
PA1224
PA1225
PA4975
HI1544
PM0887
RSc3097
SMa0346
SMa1168
SMc00379
SMc03185
mll1286
mll1288
mll6586
mll7814
CC0205
CC0277
UU380
CLUSTER 2
SPAC5H10.05c
mdaB
ZmdaB
ECs3910
YPO0670
STM3179
PA2580
HI0648
NMB0977
NMB1857
NMA0600
NMA1174
RSc2329
HP0630
jhp0573
Cj1545c

>COG2262 (Putative duplication confidence score 1.000)
CLUSTER 1
VNG1275Gm
VNG2611G
MA3622
MJ1126
MK0456
PH1132
PAB0722
PAE0782
SSO0269
APE2007
aq_1908
TM0527
FN0823
DR0139
CAC2299
Cgl1895
Rv2725c
MT2797
ML0997
L0162
SPy0922
SP0672
SA1147
lin0756
lin1334
BS_ynbA
BH2362
slr1521
all3862
hflX
ZhflX
ECs5149
YPO0374
STM4362
VC0348
PA4943
PM0907
XF0088
NMB1041
NMA1445
RSc1221
AGc2676
SMc01049
BMEI0873
mlr0403
CC1746
CT379
CPn0478
CLUSTER 2
AGc2675

>COG2263 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0205
VNG0857Cm
MA0719
MTH1918
MJ0284
MK0062
Ta1320
TVN0270
PH1948
PAB1205
PAE0261
SSO2158
APE0446
ECU08g1860
CLUSTER 2
MK1438

>COG2264 (Putative duplication confidence score 1.000)
CLUSTER 1
aq_2102
TM1079
FN1608
DR1521
CAC1284
L104221
SPy1988
SP1782
SA1407
lin1508
BS_yqeT
BH1349
sll1909
alr1419
alr1891
prmA
ZprmA
ECs4131
YPO3656
STM3383
VC0293
PA4850
HI0978
PM1088
XF2201
NMB1862
NMA0595
RSc2788
HP1068
jhp0357
Cj1117c
AGc3754
SMc01472
BMEI0592
mlr1533
CC1526
CLUSTER 2
SMa0773

>COG2267 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1753
PAB1050
YKL094w
SPCC5E4.05c
TM1350
FN1306_1
DR1537
DR2522
CAC2246
Cgl1956
Cgl2514
Rv0183
Rv2854
MT0192
MT2921
ML2603
L7563
SA1143
SA1584
lin1226
BS_ytpA
BH0879
BH3288
alr0851
pldB
ynbC_1
Z2317_1
ZpldB
ECs2012_1
ECs4755
YPO2814_1
YPO3830
YPO4014
STM3961
VC0135
PA0308
PA2540_1
PA3301
HI0645
PM1631
RSc2319
RSc3346
AGc3857
AGl1924
SMc02818
SMc04041
BMEI0552
BMEII0047
mlr1612
mlr3034
CC1734
CC2083
CC2253
CLUSTER 2
CC3441

>COG2268 (Putative duplication confidence score 0.500)
CLUSTER 1
Cgl0631
L145739
BS_yuaG
BH3500
sll1021
alr4526
alr4528
yqiK
Z4403
ECs3933
STM3199
PA3729
CLUSTER 2
all0966
mll0592

>COG2272 (Putative duplication confidence score 1.000)
CLUSTER 1
SPCC417.12
DR0415
DR2626
CAP0050
Cgl1109
Cgl2249
Rv1104
Rv2045c
MT2105
SA2240
BS_pnbA
STM1623
RSc2593
CC0799
CLUSTER 2
Rv1105

>COG2273 (Putative duplication confidence score 0.571)
CLUSTER 1
YEL040w
YGR189c
YLR213c
CAC2807
BS_bglS
BH3231
BH3232
AGl1600
SMb20955
mlr5264
CLUSTER 2
YGR143w
YPR159w
SPAC17G6.11c
SPAC23H3.11c
TM0024
Rv0315
MT0329
AGl2532_2
SMa1587_2
SMb20932_2
mll2585_2
CC0380

>COG2301 (Putative duplication confidence score 1.000)
CLUSTER 1
VNG0627G
SSO1254
APE0311
FN1379
DR1240
DR2206
Cgl0839
Rv2498c
Rv3075c
MT2573
MT3160
L0040
SPy1188
citE
ZcitE
ECs0655
YPO1928
STM0060
STM0622
STM0854
STM3120
VC0798
PA0883
HI0023
RSc1999
AGc5061
SMc01014
SMc03793
BMEII0413
BMEII1074
mll6008
mlr0906
mlr1323
mlr4422
CC2999
CC3659
CLUSTER 2
DR2219
Z1166
Z1605
ECs1345
YPO0289

>COG2307 (Putative duplication confidence score 1.000)
CLUSTER 1
DR2041
Rv2410c
MT2483
ML0606
sll1039
PA1731
RSc1122
AGc4249
SMb20887
mll0716
CC1601
CLUSTER 2
Rv2567_2
MT2643_2
ML2679_2
PA4927_2
AGl1958_2
SMc04057_2
mll2876_2

>COG2308 (Putative duplication confidence score 1.000)
CLUSTER 1
SSO1308
DR2042
Rv2411c
MT2484
ML0605
sll0335
PA1730
RSc1121
AGc4248
SMb20886
mll0717
CC1602
CLUSTER 2
Rv2567_1
MT2643_1
ML2679_1
PA4927_1
AGl1958_1
SMc04057_1
mll2876_1

>COG2310 (Putative duplication confidence score 1.000)
CLUSTER 1
DR2217_1
DR2223_1
DRA0057_1
ZterA.2_1
ZterA_1
ZterF
ZterF.2
ECs1352_1
ECs1358
YPO0295_1
CLUSTER 2
DR2217_2
DR2221
DR2224
DR2225
CAC1412
CAC1414
BS_yceC
BS_yceD
BS_yceE
slr1764
ZterD
ZterD.2
ZterE
ZterE.2
ZterZ
ZterZ.2
ECs1351
ECs1355
ECs1356
YPO0294
YPO0298
YPO0299
YPO0596

>COG2321 (Putative duplication confidence score 1.000)
CLUSTER 1
DR2596
Cgl1598
Rv2575
MT2651
SPy0775
ypfJ
Z3734
ECs3337
YPO3058
STM2486
PA4717
PM1973
RSc2503
AGc3948
SMc01213
BMEI0525
mll2493
CLUSTER 2
Rv0419
MT0433

>COG2358 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0467
AF0635
VNG0540G
APE2136
DR1649
BH0601
BH2937
BH2947
sll1037
VC0430
VCA0144
PA3848
PA5545
PM0472
PM1578
SMb20292
BMEI0796
RP197
RC0259
CLUSTER 2
AF0988
APE2545

>COG2376 (Putative duplication confidence score 1.000)
CLUSTER 1
YFL053w
YML070w
SPAC22A12.11
SPAC977.16c
FN1840
DRB0053
L44063
L45677
SA0605
lin0366
lin2843
BH3393
BH3397
ycgT
Z1971
ECs1705
YPO3350
PM1649
AGl2580
SMb20312_2
SMb20314
SMb20767
BMEI0396
BMEI0398_2
mll5289
mll5296
mll7280
mlr9018
CLUSTER 2
FN1841
L46694
SA0606
lin0365
lin2844
BH3396
ycgS
Z1970
ECs1704
YPO3349
PM1648
SMb20307
SMb20313
BMEI0397
BMEI0399
mll5295
mll7278

>COG2390 (Putative duplication confidence score 0.600)
CLUSTER 1
DR1935
L0037
SPy2053
SP0247
lin0551
lin2104
BS_deoR
BH0780
ydeW
yjhU
Z5619
ZydeW
ECs2119
ECs5004
YPO1810
YPO2324
YPO3310
YPO3348
STM4073
VCA0621
PM1273
PM1646
RSc2127
AGc3494
AGl1935
AGl814
AGl843
SMb20312_1
SMb20501
SMb20619
SMb20851
SMb21021
SMc01495
SMc01629
SMc03123
BMEI0398_1
BMEII0427
mll3409
mll3605
mll4931
mll7290
mlr7259
CLUSTER 2
CAC0708
SA0726
lin2554
BS_yvbQ
BH3561

>COG2401 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1064
MK0520
PH1507
PAB1929
APE2272
YPMT1.27c
CLUSTER 2
YPMT1.26c

>COG2405 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0099
CLUSTER 2
AF0598
APE0276
APE0890
sll0658
all2804

>COG2413 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1979
MK0982
PH0007
PAB0004
SSO0086
APE0213
CLUSTER 2
MK1464

>COG2414 (Putative duplication confidence score 0.750)
CLUSTER 1
AF0023
AF0077
AF0340
AF2281
MA1714
MA2962
MA3989
Ta0810
Ta0834
Ta1142
TVN0795
TVN1239
PH0028
PH0891
PH0892
PH1019
PH1274
PAB0647
PAB0798
PAB2085
PAB2330
PAE0622
PAE2052
PAE3427
APE0266
CAC2018
ydhV
Z2701
ECs2380
CLUSTER 2
MJ1185
PH0457
PAB1315
PAE1029

>COG2461 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0170
PAB1709
TM1002
TM1004
FN1655
CAC1531
L52568
SP0562
BH0228
CLUSTER 2
SP1472_2

>COG2514 (Putative duplication confidence score 1.000)
CLUSTER 1
PAE2685
APE2519
DR1764
Cgl2035
SPy2103
SP0073
SA1037
SA2310
lin0649
BS_yfiE
BH3305
AGc1468
AGc1648
SMc00115
BMEI1118
mlr0078
CLUSTER 2
BH2142

>COG2602 (Putative duplication confidence score 1.000)
CLUSTER 1
SA0039_2
SAP011_2
BS_ybxI
slr0319
all2480
PA5514
RSp0030
Cj0299
AGc1700
mll0916
RC1244
CLUSTER 2
RC1243

>COG2603 (Putative duplication confidence score 1.000)
CLUSTER 1
MJ0052
ybbB
ZybbB
ECs0564
STM0513
PA1643
Cj0500
CLUSTER 2
MJ0053

>COG2604 (Putative duplication confidence score 1.000)
CLUSTER 1
CAC2168
CAC2196
CAC2200
CAC2202
HP0114
jhp0106
Cj1318
Cj1333
Cj1334
Cj1335
Cj1336
Cj1337
Cj1340c
Cj1341c
TP0175
CLUSTER 2
HP0465
jhp0417

>COG2605 (Putative duplication confidence score 1.000)
CLUSTER 1
Ta0344m
TVN0888
CAC3055
Rv0115
MT0123
slr0862
Cj1425c
CLUSTER 2
Ta1304
TVN0504

>COG2610 (Putative duplication confidence score 1.000)
CLUSTER 1
MA0021
FN0225
FN0554
FN0815
CAC3605
Cgl2846
SPy1641
SA2293
BS_gntP
BS_yojA
BS_yxjC
BH0805
BH3897
dsdX
gntP
gntT
gntU
idnT
ygbN
yjhF
Z3627
ZgntP
ZgntT
ZgntU
ECs4257
ECs4285
ECs5280
YPO0767
YPO3954
STM0860
STM2913
STM3512
STM3541
STM3801
STM4482
VC0286
VCA0904
PA1051
PA2004
PA2322
HI1015
PM0793
PM1359
PM1740
NMB2027
NMA0413
RSc2518
RSp1189
CLUSTER 2
CAC2835
YPO3979
HI0092

>COG2704 (Putative duplication confidence score 0.667)
CLUSTER 1
CAC3500
dcuB
ZdcuB
ECs5105
STM3599
STM4301
VCA0205
HI0153
HI0746
PM1434
PM1918
Cj0671
CLUSTER 2
dcuA
ZdcuA
ECs5119
YPO0347
STM4325
VC2699
HP0724
jhp0660
Cj0088

>COG2716 (Putative duplication confidence score 0.667)
CLUSTER 1
gcvR
ZgcvR
ECs3341
YPO3063
STM2490
VC2159
PA1009
XF0962
CLUSTER 2
VC1249
PA0484
CC3046

>COG2721 (Putative duplication confidence score 1.000)
CLUSTER 1
Ta1392
SSO1260
STM0649
Cj0482
CLUSTER 2
Ta1393
SSO1259
CAC0696
BS_ycbH
BS_yjmJ
BH0490
uxaA
yhaG
ZuxaA
ZyhaG
ECs3973
ECs4006
YPO0581
STM0650
STM3250
RSp0830
RSp1615
Cj0483
AGc5115
AGl2029
SMc02776
BMEII0485
mlr3330
CC1488

>COG2731 (Putative duplication confidence score 1.000)
CLUSTER 1
FN1134
CAC0836
SP1327
SP1680
SP1691
yhcH
yiaL
yjgK
ZyhcH
ZyjgK
ECs4094
ECs5229
YPO2541
YPO3019
YPO3447
STM3080
STM3335
STM3669
STM4468
VC1555
HI0227
PM1255
PM1713
HP1029
jhp0395
MYPU_6600
CLUSTER 2
ebgC
ZebgC
ECs3959

>COG2761 (Putative duplication confidence score 0.500)
CLUSTER 1
VNG0170Cm
SSO1074
DR0659
CAC3447
Cgl2513
BS_ywbO
BH1902
VCA0178
XF2135
RSp0909
AGc3262
AGpA16
SMc00952
BMEII0690
mlr0515
CC1843
CLUSTER 2
SA0860
lin0963
BS_yjbH
BH2855

>COG2770 (Putative duplication confidence score 0.667)
CLUSTER 1
AF1503_2
AF1620_2
aq_1825
DR1829_2
BS_resE_2
slr0829_1
slr1860_2
all2260
alr1121_1
alr1883_2
VC2750_2
PA0172_2
RSp0012_1
RSp0253_1
RSp0254_1
AGl3494_1
SMb20450_2
mll2385_1
mll6700_2
CLUSTER 2
MA1739_2
MA2555_2
VC1295_2
PA0847_2

>COG2801 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0309
AF1071
AF1310
AF1383
AF1410
AF1705
MA0351
MA0399
MA0579
MA1034
MA1116
MA1125
MA1379
MA1434
MA1890
MA1930
MA2020
MA2187
MA2189
MA2836
MA2931
MA2940
MA2983
MA3158
MA3841
MA4057
MA4463
MA4483
Ta1408
TVN0692
TVN0867
TVN1427
YGR109w-b_2
YIL082w-a_2
SPAC13D1.01c
SPAC13D1.02c
SPAC167.08
SPAC26A3.13c
SPAC27E2.08
SPAC2E1P3.03c
SPAC9.04
SPBC1289.17
SPCC1020.14
FN0137
FN0138
FN0139
FN0486
FN0787
FN0841
FN1442
FN1447
FN1530
FN1680
FN1888
FN1889
DRA0075
DRB0019.2
Cgl0239
Cgl0698
Cgl0874
Cgl0875
Cgl0880
Cgl0881
Cgl1485
Cgl1687
Cgl1834
Cgl1835
Cgl2580
Cgl2704
Cgl2885
Cgl2886_2
Rv0796
Rv1369c
Rv1756c
Rv1764
Rv2106
Rv2167c
Rv2279
Rv2355
Rv2479c
Rv2649
Rv2812
Rv2814c
Rv3185
Rv3187
Rv3326
Rv3380c
Rv3430c
Rv3475
MT0413
MT1803
MT2879
MT2881
MT3100
MT3534
MT3879
L0432
L0433
L0434
L0435
L0436
L0438
L0439
L0440
L0457
L0458
L0459
L0460
L0461
L0462
L0463
L0464
L0465
L0466
L0467
L0468
L0469
L0470
L0471
L0472
SPy0198
SPy0565_2
SPy1336
SP1485
SA0062
SA0063
SA1622
SA1623
SAP014
pli0058
pli0072
pli0076
BH0335
BH0689
BH2343
BH3417
BH3444
slr1523
all3630
b0257
b1578
b4285
tra5_g1
tra5_g2
tra5_g3
tra5_g4
tra5_g5
yagA
yehQ
yi22
yi22_g1
yi22_g2
yi22_g3
yi22_g4
yi22_g5
yi5B
yjhS
Z0322
Z1134
Z1198
Z1207
Z1221
Z1349
Z1466
Z1573
Z1638
Z1647
Z1660
Z1793
Z1825
Z1934
Z1957
Z2065
Z2066
Z2073
Z2108
Z2109
Z2111
Z2376
Z2377
Z2430
Z2806
Z2981
Z3095
Z3107
Z3162
Z3297
Z3342
Z3924
Z3925
Z3926
Z3927
Z4334
Z4503
Z5089
Z5880
Z6054
ZyehQ
ZyjhS
ECs0288
ECs1088
ECs1090
ECs1207
ECs1208
ECs1311
ECs1380
ECs1391
ECs1527
ECs1564
ECs1666
ECs1689
ECs1781
ECs1918
ECs1961
ECs2189
ECs2219
ECs2262
ECs2478
ECs2636
ECs2745
ECs2746
ECs2795
ECs2931
ECs2932
ECs2959
ECs2972
ECs3133
ECs3491
ECs3498
ECs3862
ECs4025
ECs4537
ECs4549
ECs4945
ECs4993
ECs5244
ECs5268
YPCD1.04
YPCD1.14c
YPCD1.15c
YPCD1.18c
YPCD1.63
YPCD1.64
YPCD1.65
YPCD1.69
YPCD1.75c
YPCD1.81
YPCD1.82c
YPCD1.89
YPCD1.93
YPCD1.94
YPO0118
YPO0756
YPO0997
YPO1873
YPO1889
YPO2009
YPO2640
YPO3491
YPO3703
YPO3932
YPO4047
YPO4092
PSLT044
STM0297
STM0298
STM0325
STM0947
STM2509
STM2764
STM2765
STM2769
STM4457
VC0257
VC0817
VC1478
VC1789
VCA0371
VCA0508
VCA0791
PA0257
PA0978
PA0986
PA0987
PA1938
PA3142
PA3143
PA3144
PA3868
HI0493
HI1280
HI1721
NMB1081
NMB1751
NMA1234
NMA1284
NMA1882
RSc0423
RSc0578
RSc0828
RSc0829
RSc1435
RSc1436
RSc1438
RSc1439
RSc1492
RSc1493
RSc1549
RSc1830
RSc2265
RSc2267
RSc2313
RSc2331
RSc2405
RSc2406
RSc2408
RSc2706
RSc2707
RSc3089
RSp0460
RSp0503
RSp0504
RSp0548
RSp0557
RSp0558
RSp0567
RSp1216
RSp1217
RSp1299
RSp1303
RSp1333
RSp1624
RSp1625
RSp1628
RSp1629
AGc3822
AGl10
AGl1690
AGl545
AGl547
AGl551
AGpA137
AGpA37
AGpA508
AGpA535
SMa0360
SMa0444
SMa0806
SMa0841
SMa0846
SMa1029
SMa1171
SMa1586
SMa1614
SMa1698
SMb20064
SMb20827
SMb20905
SMb20919
SMb21233
SMc00343
SMc01050
SMc01811
SMc01994
SMc02303
SMc02329
SMc03248
SMc03296
SMc03948
SMc04250
SMc04433
BMEI1223
BMEI1397
BMEI1401
BMEI1408
BMEI1420
BMEI1422
BMEI1423
BMEII0183
BMEII0228
BMEII1097
mll5774
mll6088
mll6089
mll9368
mlr4020
mlr4024
mlr4025
mlr5757
mlr5807
mlr5843
mlr5946
mlr5952
mlr5973_1
mlr6150
mlr6273
msr5947
msr9548
CC0514
CC0515
CC0624
CC2290
CC2291
CC2656
CC2689
CC2690
CC2729
CC2741
CC2742
UU372
MYPU_0180
MYPU_1510
MYPU_3940
MYPU_7560
CLUSTER 2
HI1478

>COG2804 (Putative duplication confidence score 1.000)
CLUSTER 1
aq_1474
aq_1971
TM0837
FN2095
DR1964
CAC2105
L0313
SPy0101
SP2053
SA1374
lin1384
BS_comGA
BH2832
slr0063
slr0079
all2444
gspE
hofB
ZhofB
ECs0111
YPO0815
YPO3426
STM0143
VC0405
VC2424
VC2732
PA0686
PA2677
PA3103
PA4526
PA5210
HI0298
PM0085
XF1517
XF2544
NMB0329
NMA2159
RSc2308
RSc2825
RSc3115
RSp0148
RSp0464
Cj1471c
mlr6819
CC0174
CT571
CPn0816
CLUSTER 2
VC0835

>COG2812 (Putative duplication confidence score 1.000)
CLUSTER 1
aq_1855
TM0686
FN1830
DR2410
CAC0125
CAC0300
Cgl0243
Rv3721c
MT3824
ML2335
L0279
SPy1364
SP0865
SA0436
lin2852
BS_dnaX
BH0034
sll1360_1
sll1360_3
alr4932
alr7570
dnaX
ZdnaX
ECs0523
YPO3122
STM0484
BU481
VC1054
PA1532
HI1229
PM0364
XF1807
NMB1443
NMA1656
RSc1191
HP0717
jhp0655
Cj1157
AGc147
SMc02905
BMEI1908
mlr5503
CC0267
RP865
RC1336
CT334
CPn0040
TP1005
BB0461
UU087
MYPU_0490
MPN618
MG419
MG420
CLUSTER 2
BB0765

>COG2813 (Putative duplication confidence score 1.000)
CLUSTER 1
MJ0882
MK0709
PH1642
PAB0359
SSO0392
TM1664
DR0914
L65498
SPy1232
SP0841
SA0499
lin0284
BS_ybxB
BH0124
rsmC
ZyjjT
ECs5329
YPO0427
STM4556
BU328
VC0623
PA4627
HI0012
PM0958
AGc122
SMc00325
BMEI1959
BMEI1960
mlr5563
CC1837
CLUSTER 2
ygjO
ZygjO
ECs3966
YPO0588
STM3220
VC2297
PA4617

>COG2818 (Putative duplication confidence score 1.000)
CLUSTER 1
Cgl0145
Cgl2777
Rv1210
MT1248
ML1066
L0289
SPy2118
SP0180
SA1489
lin1680
BH1453_1
tag
Ztag
ECs4434
YPO4074
STM3642
VC1672
PA0010
HI0654
PM1601
NMB1673
NMA1931
RSp0666
AGc1200
SMc00923
BMEII1058
mlr6925
CC0382
CLUSTER 2
PA1193
mll0820

>COG2823 (Putative duplication confidence score 0.500)
CLUSTER 1
DR0392
SMb20225
SMb21444
CLUSTER 2
CAC0440
osmY
yraP
ZosmY
ZyraP
ECs4031
ECs5334
YPO0431
YPO2202
YPO3551
STM3267
STM4561
VC0578
PA4426
PA4739
HI1658
PM0649
NMB2091
NMA0339
RSc0186
RSc0189
RSc3264_1
SMa1153
RP391
RC0538

>COG2837 (Putative duplication confidence score 0.600)
CLUSTER 1
DRA0145
Rv0799c
MT0820
alr1585
yfeX
Z3696
ECs3302
YPO3025
STM2446
VC2145
PA2765
PM0455
NMB0786
NMA0996
RSc1546_1
mlr1483
CLUSTER 2
Cgl1632
SA0332
lin0386
BS_ywbN
ycdB
ZycdB
ECs1265
YPO1856
NMB0036
NMA0282

>COG2887 (Putative duplication confidence score 1.000)
CLUSTER 1
MA2359_2
APE0373
Cgl0751_2
Cgl1464
Rv2119
Rv3202c_2
MT2179
MT3296_2
ML1312
RSc1189_2
HP1089_2
jhp0336_2
Cj1482c_2
AGc40_2
SMc02759_2
BMEI2024_2
mll5084_2
CC3537_2
RP403_2
RC0550_2
TP0899
CLUSTER 2
Cgl0752_2
Rv3201c_2
MT3295_2

>COG2905 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0971
aq_2107
Cgl1258
BH3833
VC0300
VC1291
PA3233
CLUSTER 2
BH3742

>COG2932 (Putative duplication confidence score 1.000)
CLUSTER 1
FN1589
L102100_2
SPy0657_2
SPy0939_2
SPy1198_2
SPy1486_2
SPy2125_2
SA1805_2
Z1447_2
STM0898
PA0611
PA0906
HI1476
PM0417
XF0696
XF1658
XF2511
NMB0556
NMB0910
NMB1078
NMB1079
NMA0738
NMA1884
AGc784_2
AGc858
SMc02223
SMc04198_2
BMEII0498
mll8500
mlr2136_2
mlr5631
CC0082
CLUSTER 2
STM2738

>COG2936 (Putative duplication confidence score 0.500)
CLUSTER 1
Rv1215c
MT1253
L61341
SA2380
CLUSTER 2
Rv1835c
Rv2800
MT2868
lin2898
slr1771
XF1029
SMb21424
SMc01648
mll5128
mlr6999
CC0940
CC1622

>COG2940 (Putative duplication confidence score 1.000)
CLUSTER 1
MA1679
YHR119w
YHR207c
YJL105w
YJL168c
YKR029c
YPL165c
SPAC29B12.02c
SPBC428.08c
SPBP8B7.07c
SPCC1739.05
SPCC297.04c
SPCC306.04c
SPCC4B3.12
ECU09g1750
XF1478
RSc3358
mll7640
mlr3116
CT737
CPn0878
CLUSTER 2
SPAC22E12.11c

>COG2962 (Putative duplication confidence score 0.500)
CLUSTER 1
Cgl0133
PA3473
HI0223
HI0680
PM1281
CLUSTER 2
Cgl2080
SA2487
lin0788
BS_yojE
BH3866
rarD
ZrarD
ECs4749
YPO3836
STM2986
STM3955
VC0195
PA0485
RSc0570
AGc1973
SMc02545
BMEI1269
mlr7806
CC0254

>COG2966 (Putative duplication confidence score 1.000)
CLUSTER 1
MTH749_1
YJL108c_1
SPAC16A10.01_1
SPAC7D4.12c_1
FN0781
CAC2265
Cgl2571_1
Rv3737_1
MT3842_1
SP1731
SA0543
SA0700
lin0587
BH0081
yjjP
ZyjjP
ECs5324
YPO0484
STM4546
VC0438
HI0108_1
PM1895
XF1304_1
Cj1166c
CLUSTER 2
YJL107c

>COG2972 (Putative duplication confidence score 0.800)
CLUSTER 1
FN0190
SPy1061
SPy1588
SP0155
SP0662
SA0216
lin2119
BS_yesM
BS_ywpD_2
BH0792
BH1122
BH1547_3
BH1909
BH2013_3
BH2110
BH2727
BH3447
BH3678
BH3841
VCA0851
PA5262
XF1625
RSc1351
CLUSTER 2
CAC0080
CAC1582
SPy0242
SPy0244
SPy1605
SP0527
SP2236
SA1843
lin0043
lin0802

>COG2978 (Putative duplication confidence score 1.000)
CLUSTER 1
FN0470
FN0591
Cgl0101
SA2261
BH0866
BH1752
abgT
Z2428
ECs1920
YPO1008
VC0863
VC0880
PM1104
NMB1719
NMA1973
CC0745
CC1624
CLUSTER 2
Z2431
ECs1917

>COG2985 (Putative duplication confidence score 0.833)
CLUSTER 1
VNG7101
FN1450
Cgl0574
Cgl2162
yidE
ZyidE
ECs4625
YPO4083
STM3807
HI0035
PM1071
CLUSTER 2
ybjL
Z1074
ECs0927
YPO1326
STM0870
VC1145

>COG2987 (Putative duplication confidence score 0.500)
CLUSTER 1
VNG1208G
Ta0239m
TVN1356
FN1401
DRA0151
SA2122
BS_hutU
BH1983
YPO4017
VC1203
PA5100
RSc2647
AGl1830
SMb21163
BMEII0365
mlr8323
CC0957
CLUSTER 2
FN0792
SPy2082

>COG2991 (Putative duplication confidence score 0.500)
CLUSTER 1
YPO3233
VC2288
HI0173
PM1335
NMB0562
NMA0745
CLUSTER 2
VC1322
PA2992

>COG2995 (Putative duplication confidence score 1.000)
CLUSTER 1
pqiA
yebS
Z2880
ZpqiA
ECs1034
ECs2543
YPO1420
YPO1702
STM1063
STM1848
VC1500
VC1753
HI1671
PM0267
NMB1670
NMA1928
RSc0602
CLUSTER 2
RSc0603

>COG3005 (Putative duplication confidence score 1.000)
CLUSTER 1
napC
torC
yecK
ZnapC
ZtorC
ZyecK
ECs1151
ECs2583
ECs3091
YPO3036
STM2255
STM3823
VC1693
VC1951
VCA0680
PA1172
HI0348
HI0644
PM1598
PM1792
Cj1358c
AGl913
SMa0657
SMa0659
SMa1232
CLUSTER 2
Cj0265c

>COG3008 (Putative duplication confidence score 0.667)
CLUSTER 1
pqiB
ZpqiB
ECs1035
YPO1421
STM1064
VC1754
NMB1671
NMA1929
RSc0601
RSc2562
CLUSTER 2
yebT
Z2881
ECs2544
YPO1701
STM1849
VC1501
PA4689
HI1672
PM0266

>COG3018 (Putative duplication confidence score 0.500)
CLUSTER 1
VC2206
HP0837
Cj1026c
CLUSTER 2
HP0836
jhp0775

>COG3069 (Putative duplication confidence score 0.500)
CLUSTER 1
dcuC
dcuD
Z4585
ZdcuC
ECs0660
ECs4100
STM0627
VCA0665
PM0230
PM0933
CLUSTER 2
HI0585
HI0586
PM1299

>COG3083 (Putative duplication confidence score 0.500)
CLUSTER 1
yejM
ZyejM
ECs3080
YPO1260
STM2228
VC2041
HI0841
PM1883
CLUSTER 2
VC2600
PA0924

>COG3108 (Putative duplication confidence score 1.000)
CLUSTER 1
ycbK
ZycbK
ECs1009
YPO1408
STM0996
VC1269
HI1665
HI1666
PM0271
AGl2143_1
SMc04010_1
BMEII0010_1
mll2999_1
mlr6494_1
CC1512
CLUSTER 2
AGc3311
SMc00291
BMEI0722
mlr0938

>COG3111 (Putative duplication confidence score 1.000)
CLUSTER 1
ydeI
ZydeI
ECs2145
STM1515
CLUSTER 2
ygiW
Z1498
Z2099
ZygiW
ECs1244
ECs2197
ECs3906
YPO3027
PSLT020
STM3176
VCA0732
PA0320
HI1709
PM1171

>COG3126 (Putative duplication confidence score 1.000)
CLUSTER 1
ybaY
ZybaY
ECs0507
YPO3140
STM0465
VC1064
PA3674
AGc4472_1
BMEI1255_1
mlr7916_1
CLUSTER 2
PA4058

>COG3131 (Putative duplication confidence score 0.833)
CLUSTER 1
mdoG
ZmdoG
ECs1426
STM1150
VC1288
PA5078
RSc2908
CLUSTER 2
ydcG
ZydcG
ECs2029
STM1622
XF2682
RSc3057
RSp0262

>COG3142 (Putative duplication confidence score 1.000)
CLUSTER 1
FN0469
L56431
SPy0408
SP1260
lin0025
cutCm
ZcutCm
ECs2584
YPO2048
STM1907
VC0730
PM0526
XF1341
AGc4698
SMc02879
mlr1122
CC2360
CLUSTER 2
lin1017

>COG3145 (Putative duplication confidence score 1.000)
CLUSTER 1
SPAP8A3.02c
SPBC13G1.04c
Cgl0144
Rv0999a
MT1029
ML0190
all7279
alkB
ZalkB
ECs3101
STM2264
VCA0961
PA3306
XF1299
RSc2568
AGc894
SMb20399
SMc02566
BMEII0739
mlr5099
msr6861
CC0009
CLUSTER 2
mlr6860

>COG3148 (Putative duplication confidence score 1.000)
CLUSTER 1
yfiP
ZyfiP
ECs3449
YPO3271
STM2650
VC0131
VC1533
PA3606
CLUSTER 2
VC1980
PA1424

>COG3150 (Putative duplication confidence score 0.857)
CLUSTER 1
ycfP
ZycfP
ECs1486
YPO1616
STM1210
VC1892
PM0825
CLUSTER 2
yqiA
ZyqiA
ECs3919
YPO0667
STM3182
VC2432
PA4968
RSc2781

>COG3153 (Putative duplication confidence score 1.000)
CLUSTER 1
MA0446
MA1701
Cgl1207
L1005
SA0435
SA0741
lin1847
all1321
yhbS
yjhQ
ZyhbS
ECs4037
YPO3476
STM3272
VC0655
VCA0263
PA0711
PA2455
AGc3283
AGc4108
AGl3231
SMa0359
SMc00230
SMc02707
SMc02982
BMEI0456
BMEI0466
mll2972
mll4853
mlr2800
CC0405
CLUSTER 2
SMa0357

>COG3166 (Putative duplication confidence score 0.500)
CLUSTER 1
slr1275
alr1029
yrfC
ZyrfC
ECs4236
YPO0147
STM3491
VC2633
PA5043
XF0370
NMB1809
NMA0653
RSc2974
CLUSTER 2
XF1524
mlr6815

>COG3176 (Putative duplication confidence score 0.500)
CLUSTER 1
Rv3027c
MT3111
alr0228
PA4350
RSc1538
AGc599
SMc01127
BMEI1800
mlr3216
CLUSTER 2
VC0489
VCA0646
SMc02490
mll0913
CC3533

>COG3179 (Putative duplication confidence score 1.000)
CLUSTER 1
DRA0117
STM0907
STM1869A
PA0629
HI1415
SMc03769_1
CLUSTER 2
SMb20518
SMb20922

>COG3181 (Putative duplication confidence score 1.000)
CLUSTER 1
FN2103
Cgl2764
BS_yflP
BH2007
STM2786
VC1334
PA0754
PA2209
PM1679
RSc2963
RSc3088
AGc180
AGc4482
AGl312
AGpA473
SMa1927
SMb20025
SMb20724
SMb20771
SMc00499
CLUSTER 2
SMb21043

>COG3182 (Putative duplication confidence score 1.000)
CLUSTER 1
Cgl2275
SA1275
BH0982
BH1854
VCA0891
PA0801
PA1909
PA2403
PA2465
PA3789
PA4513_1
NMB1721
NMA1975
RSp1642
AGc3630
CC1782
CC2927
CC3501
CLUSTER 2
PA4219

>COG3185 (Putative duplication confidence score 0.600)
CLUSTER 1
Cgl0417_2
PA0242_2
RSp1400_2
AGl678_2
SMb20581_2
CLUSTER 2
slr0090
all0771
VC1344
PA0865
RSc3103
RSp1316
RSp1347
SMc03211
mll8309
CC2533

>COG3188 (Putative duplication confidence score 1.000)
CLUSTER 1
slr0019
fimD
htrE
sfmD
ybgQ
ycbS
ydeT
yehB
yfcUm
yqiG
yraJ
Z0022
Z1288m
Z1536
Z2203
Z3600
Z4968m
Z5222
ZfimD
ZhtrE
ZsfmD
ZybgQ
ZyehB
ZyraJ
ECs0022
ECs0143
ECs0594
ECs0743
ECs1023
ECs1024
ECs1278
ECs2110
ECs2915
ECs3221
ECs4022
ECs4428
ECs4429
ECs4667
ECs5276
YPMT1.83
YPO0698
YPO1305
YPO1696
YPO1709
YPO1920
YPO3879
PSLT017
STM0023
STM0175
STM0196
STM0301
STM0338
STM0546
STM2150
STM3028
STM3638
STM4593
PA0994
PA2130
PA4084
PA4652
XF0081
RSc2693
RSp1498
AGl299
mll7724
RC0641
CLUSTER 2
yhcD
YPO0302
STM4572

>COG3191 (Putative duplication confidence score 0.500)
CLUSTER 1
PH0078
PAB0045
PA1486
RSc1383
AGc4562
AGpA343
SMa0095
BMEII0741
mll6895
mlr2477
CLUSTER 2
SSO1540
DR0782
Cgl2463
Rv1333
MT1375
ML1167
AGc4649
SMc00512
BMEII0898
mll0085
CC2187

>COG3199 (Putative duplication confidence score 0.667)
CLUSTER 1
AF0748
SSO1527
PA4149
CLUSTER 2
VNG0764C
Ta1068
TVN0523
PH1675
PAB0335
SSO0869
APE1825
PA1572

>COG3200 (Putative duplication confidence score 1.000)
CLUSTER 1
Cgl2130
Rv2178c
MT2234
ML0896
PA2843
HP0134
jhp0122
Cj0716
AGc2964
SMc00155
BMEI0971
mll0826
CC2300
CLUSTER 2
PA1901
PA4212

>COG3209 (Putative duplication confidence score 1.000)
CLUSTER 1
MA2043
MA2045
CAC1057
CAC1061
lin0454
BS_wapA
rhsA
rhsB
rhsC
rhsD
rhsE
ybfO
yibJ
ylbH
Z0268
Z0272
Z0651
Z0702
Z0705
Z0851
Z2257
Z2259
Z2261
Z5485
Z5487
Z5488
ZrhsA
ZrhsC
ZyibJ
ECs0237
ECs0242
ECs0560
ECs0603
ECs0605
ECs0729
ECs2061
ECs4470
ECs4864
YPO2312_1
YPO2380
YPO3608
YPO3609
YPO3615
YPO3673
YPO3674
STM0291
STM0292
PA2457
PA2458
PA2684
RSc2470
RSp0085
RSp0086
RSp0096
RSp0151
RSp0157
RSp0449
RSp0454
RSp0455
RSp0456
RSp0457
RSp0458
RSp0459
RSp0476
RSp0477
RSp1137
RSp1305
RSp1335
RSp1585
mll6838_2
CLUSTER 2
YPO0762

>COG3210 (Putative duplication confidence score 1.000)
CLUSTER 1
FN0132
FN1817
CLUSTER 2
FN0290
FN0291
slr1753_1
all2171
all4433
all5104
all5105
all5106
all5107
all5108
all5110
all5111
all5112
all5113
all5114
all5115
all5280
all7072
all7235
all7313
alr0366
alr0367
alr1184
alr1397
alr1906
Z1542
ECs1282
YPO0599
YPO2045
YPO2486
YPO2490
YPO3247
YPO3721
YPO4006
PA0041
PA0690
PA2462
PA4082
PA4541
PA4625
HI0264
PM0057
PM0059
XF0889
XF0893
XF0897
XF2196
XF2775
NMB0490
NMB0493
NMB0497
NMB0499
NMB0502
NMB0506
NMB0511
NMB1214
NMB1768
NMB1772
NMB1775
NMB1779
NMA0688
NMA0690
NMA0692
RSc0887
RSc1775
RSc3183
RSc3188
RSp0540
RSp1071
RSp1073
RSp1444
RSp1536
RSp1539
RSp1545
Cj0737
Cj0968
CC0602

>COG3213 (Putative duplication confidence score 1.000)
CLUSTER 1
VC2330
PA2662
NMB0439
NMA2046
RSc3399
AGl924
AGl968
SMa1194
SMa1252
BMEII0964
CLUSTER 2
NMB0552
NMA0732

>COG3230 (Putative duplication confidence score 0.500)
CLUSTER 1
DRA0052m
PA4116
CLUSTER 2
PA0672
NMB1669
NMA1927
AGc4545

>COG3246 (Putative duplication confidence score 0.500)
CLUSTER 1
AF1210
FN1868
Rv1718
PA5387
AGpA488
SMc01637
mll0106
mll1033
mlr5039
mlr9032
CLUSTER 2
DR0052
RSc0083
SMa0574
SMb20275
mll1845

>COG3250 (Putative duplication confidence score 0.500)
CLUSTER 1
SSO3036
TM1062
TM1193
L0025
SPy1586
SP0648_2
BH2723
ebgA
lacZ
uidA
ZebgA
ZlacZ
ZuidAm
ECs0397
ECs2324
ECs2325
ECs3958
YPO1654
SMb21655
CLUSTER 2
TM1624
XF0846
AGc2809
AGc4665
SMc04255

>COG3258 (Putative duplication confidence score 0.500)
CLUSTER 1
sll1359_2
PA2481
PA4571_2
Cj0874c
BMEII0895
CLUSTER 2
RSp1453
Cj0037c

>COG3264 (Putative duplication confidence score 1.000)
CLUSTER 1
slr0510_1
slr1575_1
aefA
ZaefA
ECs0518
YPO3129
STM0478
PA1408
PA5022
HI0195.1
PM0358
RSc2451
AGc3014
SMa1582
SMc00028
SMc04176
BMEI0682
mll1272
CC3000
CLUSTER 2
yjeP
ZyjeP
ECs5138
YPO0363
STM4347

>COG3267 (Putative duplication confidence score 1.000)
CLUSTER 1
Rv2813
MT2880
PSLT043
VC0403
VC1798
VC2445_1
PA3869
PA5037_1
CLUSTER 2
VC2627_1

>COG3269 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0280
VNG0287a
VNG2263G_2
VNG6090C
VNG6437C
VNG7069
VNG7140
MA0056
MA0057
MA0058
MA0059
MA0182_2
MA1288_2
MTH1263
MJ0660
MK1022
Ta0605_2
TVN0655_2
PAE3058
CLUSTER 2
VNG1050H

>COG3271 (Putative duplication confidence score 1.000)
CLUSTER 1
MA2198
MTH1463
MTH97
PA1762
PA1953
NMB0103
NMB0582
NMB0855
NMA0173
NMA0767
NMA1066
RSc0445
Cj0058
CLUSTER 2
MTH1330
MTH1332
MTH1651
MTH1653
MTH96

>COG3288 (Putative duplication confidence score 1.000)
CLUSTER 1
Rv0155
ML2636
slr1239
all3410
pntA
ZpntA
ECs2309
YPO2303
STM1479
VCA0563
PA0195
HI1362
PM0753
NMB0980
NMA1177
RSc2730
RSp0949
AGc4529
SMc03950
BMEII0323
mlr5181
CC3305
RP863
RC1334
CLUSTER 2
Rv0156
ML2635
asl3409
PA0195a
RSc2732
RSp0950
SMc03939
BMEII0324
mlr5183
CC3304
RP862
RC1333

>COG3290 (Putative duplication confidence score 1.000)
CLUSTER 1
Cgl0068
SPy1107
BS_citS
BS_ydbF
BS_yufL
BH0397
BH2752
BH3839
citA
dcuS
ZcitA
ZyjdH
ECs0658
ECs5107
STM0053
STM0625
STM4304
VC0791
VC1605
CLUSTER 2
BS_yccG

>COG3292 (Putative duplication confidence score 1.000)
CLUSTER 1
sll0241
all1523
VC1353_1
XF1330_1
CLUSTER 2
VC2080_1

>COG3298 (Putative duplication confidence score 0.500)
CLUSTER 1
NMB1417
NMA1628
HP0688
Cj1132c
CLUSTER 2
HP0689
jhp0628

>COG3299 (Putative duplication confidence score 1.000)
CLUSTER 1
lin1287
BS_xkdT
BS_yqbT
ymfP
ECs4987
YPO1250
HI1520
XF1598
XF1704
NMA1323
NMA1826
NMA1827
CLUSTER 2
lin1710

>COG3321 (Putative duplication confidence score 1.000)
CLUSTER 1
CAC3355
Cgl2811_1
Rv0405_1
Rv1180
Rv1181
Rv1527c
Rv1661
Rv1662
Rv1663
Rv1664
Rv2048c_1
Rv2048c_2
Rv2381c
Rv2382c
Rv2931
Rv2932
Rv2933
Rv2934
Rv2935_1
Rv2940c
Rv2946c
Rv2947c
Rv3800c_1
Rv3825c
MT0418_1
MT1218
MT1701
MT1702
MT1703
MT1704
MT2108_1
MT2108_2
MT2449
MT2450
MT3000
MT3002
MT3003
MT3004
MT3005_1
MT3010
MT3018
MT3021.1
MT3907_1
MT3933
ML0101_1
ML0135
ML0139
ML1229
ML2353_1
ML2354
ML2355
ML2356
ML2357
BS_pksD
BS_pksK_2
BS_pksK_3
BS_pksK_4
BS_pksL_1
BS_pksL_2
BS_pksL_3
BS_pksL_4
BS_pksM_1
BS_pksM_2
BS_pksM_3
BS_pksP_2
BS_pksP_3
BS_pksP_4
BS_pksR_2
all1643_1
all1644
all1646
all1648_1
all1649
all2635
all2646
alr2679
alr2680
alr5351
alr5353
alr5354
alr5355
YPO1910_1
RSc1806_2
RSc1810_1
RSp0641_2
AGl2313
AGl2329
SMc02273
mlr9053_1
CLUSTER 2
BS_pksR_1

>COG3329 (Putative duplication confidence score 0.500)
CLUSTER 1
Rv2387
MT2456
BH3869
alr0986
CC3509
CLUSTER 2
slr1512
all2134

>COG3341 (Putative duplication confidence score 1.000)
CLUSTER 1
YMR234w_1
SPBC336.06c_1
TM1296
CAC2551
BH0863
CLUSTER 2
CAC1856

>COG3342 (Putative duplication confidence score 0.500)
CLUSTER 1
VNG1422H
PAE3380
SSO1350
SSO1945
SSO1947
APE1388
BH2194
CLUSTER 2
VNG2644a
PA5391

>COG3347 (Putative duplication confidence score 1.000)
CLUSTER 1
Ta0481_1
BS_yuxG_1
BH1550_1
slr1208_1
YPO1811_1
AGl2690_1
SMb20837
SMb21015
SMc02322_1
mll7289_1
mlr5708_1
CLUSTER 2
SMc01619
mlr3601
mlr7271

>COG3349 (Putative duplication confidence score 1.000)
CLUSTER 1
VNG0277G
Rv3727
MT3830
sll0254_3
slr0940
slr1254
all2382
alr1788
alr1832
alr2257
alr2785_3
CLUSTER 2
sll0254_1
alr2785_1

>COG3367 (Putative duplication confidence score 0.500)
CLUSTER 1
VNG1839H
MK0569
Ta0025
TVN0072
TM0796
all3531
SMc03251
CLUSTER 2
MTH1837
MK0035
MK1582

>COG3370 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1964
Ta0241
TVN1354
PAE2742
SSO2867
APE1568
CLUSTER 2
Ta0584a
TVN0643

>COG3371 (Putative duplication confidence score 0.800)
CLUSTER 1
Ta0785
TVN0809
PH1785
PAB0225
PAE2889
SSO3111
CLUSTER 2
Ta0986
TVN0479
PH0262
PH1610
PAB0162
APE2535

>COG3384 (Putative duplication confidence score 0.750)
CLUSTER 1
MA0486
Ta1117
SSO1913
SSO2052
SPBC1709.16c
CAC0851
ygiD
ZygiD
ECs3927
YPO0659
STM3189
PA2839
RSc0015
CC2958
CLUSTER 2
YPO1764
STM1103
PA4124
PM1531

>COG3385 (Putative duplication confidence score 1.000)
CLUSTER 1
VNG0052H
VNG0059H
VNG0112H
VNG0337H
VNG1590H
VNG1653H
VNG2175H
VNG6015H
VNG6016H
VNG6038H
VNG6042H
VNG6079H
VNG6106H
VNG6111H
VNG6147H
VNG6148H
VNG6161H
VNG6290H
VNG6331H
VNG6345H
VNG6366H
VNG6395H
VNG6447H
VNG6484H
VNG7012
VNG7032
VNG7035
VNG7037
VNG7059
VNG7119
VNG7150
VNG7172
VNG7174
MA0984
MA1757
MA2016
MA2679
MA2857
MA3329
TVN0693
TVN1465
SSO0132
SSO0137
SSO0141
SSO0515
SSO0525
SSO0549
SSO0787
SSO10674
SSO10982
SSO11138
SSO11307
SSO1180
SSO12063
SSO12067
SSO1245
SSO1280
SSO1293
SSO1302
SSO1317
SSO1367
SSO1396
SSO1408
SSO1417
SSO1448
SSO1466
SSO1472
SSO1473
SSO1480
SSO1509
SSO1546
SSO1572
SSO1599
SSO1627
SSO1642
SSO1678
SSO1688
SSO1703
SSO1735
SSO1775
SSO1779
SSO1796
SSO1822
SSO1832
SSO1833
SSO1847
SSO1850
SSO1853
SSO1856
SSO1904
SSO1937
SSO1938
SSO1978
SSO1995
SSO2086
SSO2103
SSO2104
SSO2120
SSO2145
SSO2540
SSO2562
SSO2721
SSO2724
SSO2784
SSO2834
SSO2845
SSO2855
SSO2883
SSO2888
SSO2889
SSO2922
SSO2985
SSO3018
SSO3027
SSO3033
SSO3101
SSO3135
SSO3151
SSO3259
SSO6050
SSO6566
SSO7351
SSO7635
SSO7986
SSO8002
SSO9407
DR0010
DR0870
DR1284
DR1285
DR1618
DR1762
DR2222
DRA0253
DRB0018
DRB0055
DRB0058
DRB0059
DRB0103
DRB0113
DRB0114
DRB0132
BH0436
BH0691
BH0769
sll0010
sll0315
sll0317
sll1255
sll1474
sll1560
sll1780
sll1997
sll1999
slr0180
slr1635
slr2036
all7115
all7244
yi41
yi81
yi81_g1
yi81_g2
RSc1484
RSc1864
RSc3168
RSc3242
RSp0465
RSp1149
RSp1300
SMb20766
SMc00721
SMc01453
SMc02719
SMc02731
SMc02762
SMc02823
SMc03067
SMc04116
CLUSTER 2
VNG6007H
VNG6119H
VNG7005
VNG7085

>COG3386 (Putative duplication confidence score 1.000)
CLUSTER 1
Ta0648
TVN0929
SSO2705
SSO3041
YBR053c
DR0277
SA2480
BS_yvrE
STM2668
PA1293
PM1248
XF1297
XF1742
RSc2755
RSp0824
RSp0832
AGc1268
AGl1336
AGl1647
AGl1784
AGpA685_2
SMa0060
SMa0196
SMa0717_2
SMb20453
SMc00883
SMc04142
BMEI1997
BMEII0198
mll1724_2
mll4328
mll7820
mlr4744
mlr7379
msl1031
CC0820
CC1224
CC1805
CC2128
CLUSTER 2
DR1790

>COG3387 (Putative duplication confidence score 0.500)
CLUSTER 1
MA1190
MA4050
MJ1610
Ta0342
TVN0428
SSO0990
SSO1163
SSO1167
SSO2473
YIL099w
SPBC14C8.05c
CAC2810
alr1586
AGl102
mlr4205
CC2282
CLUSTER 2
Ta0286m
TVN1315
SSO2742
SSO2754
SPAC4H3.03c
Cgl2214
Rv2402
MT2474
RSc1458

>COG3396 (Putative duplication confidence score 1.000)
CLUSTER 1
SSO1312
SSO1313
SSO2018
SSO2019
DR2386
BH0196
ydbO
RSp0604
SMb21640
CLUSTER 2
DR2384
BH0198
ydbP
RSp0606
SMb21638

>COG3408 (Putative duplication confidence score 0.571)
CLUSTER 1
MA0905
MA2628
Ta0341
TVN0429
SSO0991
YPR184w_2
DR0191
all4639
CLUSTER 2
MA1640
Ta0147
Ta0686
Ta0687
TVN1147
TVN1148
PH1222
PAB0689
BH3691
alr0331
SMb20116
SMb20968
mll0692

>COG3424 (Putative duplication confidence score 1.000)
CLUSTER 1
DR2091
DRA0326
Rv1660
Rv1665
MT1698
MT1705
BS_bcsA
BH0617
CLUSTER 2
Rv1372
MT1417

>COG3437 (Putative duplication confidence score 1.000)
CLUSTER 1
TM0186
TM1147
CAC3251
sll1624
slr2100
alr3920
VC1348
VCA0210
PA4781
XF1113
CLUSTER 2
VC1087
PA2572

>COG3444 (Putative duplication confidence score 1.000)
CLUSTER 1
FN0631
CAP0066_2
L1762179_2
SPy0631
SPy1058
SPy1738_2
SP0061
SP0284_2
SP0323
SP2163
lin0021
lin0143_2
lin0776
lin2110
BS_levE
agaB
agaV
manX_2
Z5616
ZagaB
ZagaV
ZmanX_2
ECs2527_2
ECs4011
ECs4018
ECs5001
YPO0834
YPO1758_2
STM0576
STM1830_2
STM3771
STM4536
PM0834_2
CLUSTER 2
CAC1458

>COG3449 (Putative duplication confidence score 1.000)
CLUSTER 1
CAC3490
lin1814_2
BS_yosT
BH0401_2
BH4009
ygiV
Z4375
ECs3905
STM3175_2
RSc0132_2
RSp1247_2
mll4902_2
CC2527_2
CLUSTER 2
sbmC
ZsbmC
ECs2811
STM2061

>COG3450 (Putative duplication confidence score 0.500)
CLUSTER 1
TM1112
asr1714
PA1917
PA2762
PA3425
PA5314
AGc2315
AGc536
AGl2844
SMa1840
SMc01810
mll2946
mll3593
mll7047
mlr4195
mlr4196
mlr4197
mlr8466
CLUSTER 2
STM3127
PA2318

>COG3454 (Putative duplication confidence score 1.000)
CLUSTER 1
all2216
phnM
ZphnM
ECs5078
YPO3463
PA3374
AGc279
SMb21171
BMEI1106
mll4974
mll9156
mlr9276
CLUSTER 2
all2221_2
mlr2305

>COG3464 (Putative duplication confidence score 1.000)
CLUSTER 1
MA2406
MA2954
MA3988
TVN0466
TVN0687
TVN0688
FN0274
FN0275
FN0599
Cgl0876
Cgl1015
Cgl1042
Cgl2316
Cgl2427
Rv0741
Rv1313c
Rv2810c
Rv3798
MT0725
MT0767
MT1353
MT3905
SP0460
SP0836
SP1262
SP1444
SP1582
SP1639
SP1692
SP1792
SA0369
SA0586
SA0787
SA1006
SA1541
SA1677
SA1884
SA2289
BH0089
BH0123
BH0245
BH0270
BH0379
BH0416
BH0668
BH0767
BH0954
BH1049
BH1170
BH1183
BH1307
BH1338
BH1347
BH1381
BH1412
BH1473
BH1546
BH1686
BH1701
BH1929
BH1946
BH1963
BH2154
BH2204
BH2377
BH2472
BH2477
BH2641
BH2651
BH2774
BH2922
BH2967
BH2978
BH3137
BH3247
BH3409
BH3499
BH3507
BH3565
BH3585
BH3752
all7161
alr1609
alr2698
alr7003
alr7305
alr7349
alr7350
alr7386
alr8016
asr7006
RSc2573
RSp1547
AGpA139
SMa0643
mll5961
mll6319
CLUSTER 2
mll9026

>COG3476 (Putative duplication confidence score 0.500)
CLUSTER 1
AF1475
MA4214
SPBC725.10
CAC0262
L173469
BS_ytaB
all3007
AGc485
SMa1079
CLUSTER 2
sll1845
all4617
alr4114
alr4115

>COG3482 (Putative duplication confidence score 1.000)
CLUSTER 1
MA0164
MTH989
Rv1376
MT1420
AGl2517
SMb21116
SMc01412
mll0573
CLUSTER 2
MTH988

>COG3483 (Putative duplication confidence score 1.000)
CLUSTER 1
DRA0339
PA2579
RSc0758
mlr0620
CC2886
CLUSTER 2
RSp0694

>COG3498 (Putative duplication confidence score 1.000)
CLUSTER 1
Z2990
ECs2644
STM2700
PA0623
XF0728
XF2484
RSc1917
CLUSTER 2
STM4212

>COG3504 (Putative duplication confidence score 1.000)
CLUSTER 1
XF2051
XFa0013
XFa0042
RSc2576
HP0528_3
jhp0477_3
AGpA229
AGpT12
AGpT73
SMa1306
BMEII0033
mll9604
mlr6404
mlr9258
CC2421
CC2686
RP286
RP290
RC0384
RC0388
CLUSTER 2
HP0039m
HP0528_1
jhp0035
jhp0477_1
jhp0922m_1

>COG3507 (Putative duplication confidence score 1.000)
CLUSTER 1
CAC0577
BS_abnA
BS_yxiA
BH1878
CLUSTER 2
CAC3452
CAP0114
L0234
BS_xynB
BH3683
yagH
SMc04247
CC0813
CC0989
CC2802

>COG3511 (Putative duplication confidence score 0.500)
CLUSTER 1
SSO2789
Rv1755c
Rv2349c
Rv2350c
Rv2351c
MT1799
MT2414
MT2415
MT2416
PA0844
PA3319
RSc0319
CC3031
CLUSTER 2
RSp1174
mlr8246

>COG3523 (Putative duplication confidence score 1.000)
CLUSTER 1
Z0250
ECs0218
YPO0515
YPO2724
YPO3603
STM0285
VCA0120
PA0077
PA1669
RSp0763
AGl1062
mlr2349
mlr2360
CLUSTER 2
YPO1482
PA2361

>COG3527 (Putative duplication confidence score 1.000)
CLUSTER 1
MA3744
CAC2967
L0321
L0322
SP1392
SA2007
SA2394
lin2099
BS_alsD
VC1589
CLUSTER 2
MA3746

>COG3531 (Putative duplication confidence score 1.000)
CLUSTER 1
YPO0630
PA0859
RSc0778
CLUSTER 2
YPO0801
VCA0901
PA0058
RSc1444
mll3417

>COG3536 (Putative duplication confidence score 1.000)
CLUSTER 1
PA2292
CLUSTER 2
PA5055
NMB0742
NMA0955
RSc0457
AGc3112
SMc00145
BMEI1018
mll0540

>COG3541 (Putative duplication confidence score 1.000)
CLUSTER 1
MJ0002
CAC1496
CAC1497
BS_ycgL
alr0150
asr5365
PA4584
RSc0225
mll4259
CLUSTER 2
alr5366

>COG3549 (Putative duplication confidence score 1.000)
CLUSTER 1
all2924
VCA0391
HI1250
XF0721
SMc02461
SMc02476
mlr1576
CLUSTER 2
XF1709

>COG3552 (Putative duplication confidence score 0.667)
CLUSTER 1
MTH1815
Rv2425c
MT2498
CLUSTER 2
APE2221
Rv0368c
MT0384
RSc1465
SMc00516
mlr0089
mlr1707

>COG3555 (Putative duplication confidence score 1.000)
CLUSTER 1
all5009
STM4286
PA0936
PA4512
XF2100
RSc1877
BMEI0464
BMEI0465
mll1937
mlr0331
CLUSTER 2
XF2039

>COG3561 (Putative duplication confidence score 1.000)
CLUSTER 1
CAC1945
L52331_1
SPy0946_1
SA1801_1
Z1503
ECs1251
HI1422
NMA1293
CLUSTER 2
Z1818_2
ECs1199_2
ECs1557_2

>COG3562 (Putative duplication confidence score 1.000)
CLUSTER 1
PM0772
NMB0083
NMA0185
Cj1413c
SMc02269
CLUSTER 2
SMb20824_2

>COG3599 (Putative duplication confidence score 0.667)
CLUSTER 1
DR1369
CAC2118
Cgl2100
Rv2145c
MT2204
ML0922
L102051
L117685
SPy1514
SPy1646
SP0372
SP1661
SA1035
SA1279
lin2002
lin2128
BS_divIVA
BS_ypsB
BH1769
BH2546
MYPU_3050
CLUSTER 2
Cgl2024
Rv2927c
MT2997
ML1661
slr0848
alr4701

>COG3604 (Putative duplication confidence score 0.625)
CLUSTER 1
aq_1792
aq_218
fhlA
hyfR
ZfhlA
ZhyfR
ECs3353
ECs3587
STM2859
PA1663
SMa0815
mll5837
mll5857
CLUSTER 2
ygaA
ZygaA
ECs3565
STM2839
VCA0182
PA2665
RSp0959
TP0082

>COG3616 (Putative duplication confidence score 0.750)
CLUSTER 1
YGL196w
SPAC1039.06
FN0552
Cgl2558
Rv1413
Rv1414
MT1457
RSc2709
RSp1185
AGl1808
AGl1837
AGpA328
SMb21134
BMEII0546
mll6666
mll8328
CC3106
CLUSTER 2
Rv1769
MT1820
PA5326
mlr8208

>COG3618 (Putative duplication confidence score 0.500)
CLUSTER 1
YPO1933
RSp0233
Cj0556
AGl3341
CLUSTER 2
PA2211
Cj0487
AGc5105
AGl2610
SMb21101
BMEI1718
mll5767
mlr1708
mlr7156

>COG3622 (Putative duplication confidence score 1.000)
CLUSTER 1
Cgl2056
mll1001
mlr7629
CLUSTER 2
Cgl2419
gip
ygbM
Zgip
ECs0569
YPO1238
STM0518
STM2915
PA0550
PA1501
HI1013
PM1363
RSc0020
RSc3282
SMb20669
SMb20680
BMEII1092
mlr0252

>COG3627 (Putative duplication confidence score 1.000)
CLUSTER 1
all2219
phnJ
ZphnJ
ECs5081
YPO3460
PA3377
AGc297
SMb20762
mlr3346
CLUSTER 2
mll9152
mlr9282

>COG3636 (Putative duplication confidence score 0.500)
CLUSTER 1
YPO1088
XFa0046
CLUSTER 2
HI1420
XF1596
XF1702
XF2763
RSp0076
SMc00178_2
CC3037

>COG3639 (Putative duplication confidence score 1.000)
CLUSTER 1
VNG2084G
PAE2697
FN1137
Cgl1423
Cgl1424
L98204
L99004
SA0135
SA0136
BH0441
BH0442
BH0470
BH2975
BH2976
all2227
all2356
all8088
b4103
phnE
ZphnE
ECs5086
YPO1184
YPO1185
PA3315
PA3316
PA3382
AGc284
AGc285
SMb21174
SMb21175
mlr3356
mlr3358
mlr3359
CC0363
MYPU_2180
MPN417
MG291
CLUSTER 2
MYPU_1080

>COG3640 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0378
AF1685
MA1013
MA1967
MA3863
MTH1120
MTH1711
MJ0685
MJ0823
MK0721
MK0726
CLUSTER 2
MA1021
MA1340
MA2780
MA3449
MTH571
MJ0084

>COG3646 (Putative duplication confidence score 0.500)
CLUSTER 1
L42465
lin1260_1
lin1738_1
BS_yoqD_1
Z1457_1
ECs1200_1
HI1412
PM1774
CLUSTER 2
L6094
SP1134

>COG3652 (Putative duplication confidence score 1.000)
CLUSTER 1
DR1385
PA2134
SMb20223
SMb20593
mll8139
CC3563
CLUSTER 2
PA2109

>COG3662 (Putative duplication confidence score 1.000)
CLUSTER 1
Rv0276
Rv2237
MT0288
MT2296
CLUSTER 2
Rv0826
Rv1645c
MT0848
MT1683
PA4734
RSp1255
CC2570

>COG3669 (Putative duplication confidence score 0.500)
CLUSTER 1
SSO11867
SSO3060
TM0306
XF2714
CC0795
CLUSTER 2
SP2146
XF0106

>COG3670 (Putative duplication confidence score 0.500)
CLUSTER 1
Rv0654
Rv0913c
MT0683
MT0938
all1106
CC0776
CLUSTER 2
sll1541
slr1648
all4284
all4895
RSp0212
CC0333

>COG3677 (Putative duplication confidence score 1.000)
CLUSTER 1
VNG0918H_1
VNG7107_1
MA1315
MA1650
MA1879
MA2162
MA2470
MA2734
MA2785
MA2946
MA3005
MA3222
MA3311
MA3375
MA3511
MA3848
MA4108
MA4225
PH1854
PAB2064
SSO0509
SSO0511_1
SSO0541_1
SSO1436_1
SSO1654_1
SSO2242
SSO2320_1
SSO2898
SSO2950_1
SSO8684
SSO8685
CAC1493
CAC1597
sll1156
slr1902
slr2095
insA_g1
insA_g2
insA_g3
insA_g6
insA_g5
insA_g7
Z1122
Z1561
ECs1373
YPO0964
YPO0968
YPO0981
STM0861_1
RSc3179
CLUSTER 2
RSc0889

>COG3678 (Putative duplication confidence score 1.000)
CLUSTER 1
sll0858
alr4637
spy
yiiO
Zspy
ZyiiO
ECs2449
ECs4839
YPO0075
STM0307
STM1308
STM4060
VC2691
PA3205
NMA1414
RSp1160
SMb21562
CLUSTER 2
zra
ZyjaI
ECs4925
STM4172

>COG3679 (Putative duplication confidence score 0.800)
CLUSTER 1
AF1058
VNG0853C
SPy0811
SP1372
SA1663
lin2326
BS_yheA
BH1149
CLUSTER 2
L162952
SA0968
lin2161
BS_ylbF
BH2596

>COG3685 (Putative duplication confidence score 0.833)
CLUSTER 1
all0615
yciF
Z1923
ZyciF
ECs1654
ECs1830
STM1729
AGl1433
AGpA401
AGpA721
AGpA727
SMc00371
mll4608
mll9661
mlr3134
CLUSTER 2
yciE
Z1922
ZyciE
ECs1653
ECs1829
STM1730
PA2184
SMb20091

>COG3704 (Putative duplication confidence score 1.000)
CLUSTER 1
XFa0011
AGpA226
AGpT10
SMa1311
BMEII0030
mlr9255
CC2420
RP104
RP105
RC0142
RC0143
CLUSTER 2
RP106
RP107
RP108_1
RC0144
RC0145
RC0146_1

>COG3706 (Putative duplication confidence score 1.000)
CLUSTER 1
TM0143
BH2234
slr1760
all2874
alr2306_1
alr3599
PA3702
PA4396
PA4843
Cj0643
AGc1956
AGc2387
SMc01370
BMEII0660
mll0859
mll9509
CC1842
CC2462
RP237
RC0321
BB0419
CLUSTER 2
BH2233

>COG3711 (Putative duplication confidence score 1.000)
CLUSTER 1
FN0198
CAC0155
CAC0422
CAC0569
CAC1355
CAC1406
Cgl2781
L0154
L30901
SPy0181
SPy0571
SPy1325_1
SPy1952_1
SP0306
SP0395
SP0576
SP1187
SP2032
SP2131_1
SA0235_1
SA0321_1
SA1191
SA1961
SA2433_1
lin0325_1
lin0425_1
lin0445_1
lin0501_1
lin0871_1
lin0919_1
lin2203_1
lin2243
lin2455_1
lin2530
lin2801_1
lin2817_1
BS_glcT
BS_licR_1
BS_licT
BS_sacT
BS_sacY
BS_ydaA
BS_yjdC_1
BH0193_1
BH0220_1
BH0297
BH0781
BH0845
BH3853
bglG
csiE
ZcsiE
ECs3401
YPO2903
STM2553
STM4448_1
CLUSTER 2
frvR_1
ZfrvR_1
ECs4823_1

>COG3722 (Putative duplication confidence score 1.000)
CLUSTER 1
mtlR
ZmtlR
ECs4477
YPO4066
STM3687
VCA1047
PM1063
CLUSTER 2
yggD
ZyggD
ECs3805

>COG3732 (Putative duplication confidence score 1.000)
CLUSTER 1
lin0547
BH0772
srlE
ZsrlE.2
STM2752
STM2833
PM1970
mll3613
CLUSTER 2
ZsrlE.1

>COG3741 (Putative duplication confidence score 1.000)
CLUSTER 1
DR1397
YPO1971
PA5091
AGl1827
SMb21164
BMEII0366
mlr8322
CC0958
CLUSTER 2
AGl1927
SMc04043
BMEII0049
mll3040
CC0743

>COG3745 (Putative duplication confidence score 0.500)
CLUSTER 1
PA4305
RSp1089
CLUSTER 2
RSc0656
AGc380
SMa1576
SMc04112
mll0900
mll6480
mlr5595
CC2946

>COG3748 (Putative duplication confidence score 1.000)
CLUSTER 1
PA1513
RSc2115
AGc4211
SMb20848
SMb21292
BMEI1572
mlr5140
CC2607
CLUSTER 2
CC1988

>COG3773 (Putative duplication confidence score 1.000)
CLUSTER 1
CAC0686_2
CAC1232_2
CAC3081
BS_cwlJ
BS_sleB_2
BS_ykvT
BH1631_2
BH2879_2
BH3826
AGc1291
SMc00928
BMEI1548
mlr7408
CC2872
CC2967
CLUSTER 2
BMEI1983
mlr5508

>COG3798 (Putative duplication confidence score 1.000)
CLUSTER 1
DR1261
msr0083
CC1532
CLUSTER 2
DR1348

>COG3800 (Putative duplication confidence score 0.600)
CLUSTER 1
Cgl0365_2
Cgl0678_2
Rv0465c_2
Rv1129c_2
MT0481_2
MT1161_2
AGl2480_2
SMb20754_2
BMEI0802_2
CLUSTER 2
AGc1081_2
SMc00769_2
BMEI0410_2
mlr6529_2
CC1763_2

>COG3802 (Putative duplication confidence score 0.500)
CLUSTER 1
PA2216
mll7189
CLUSTER 2
AGc4261
SMb20892
BMEII0354
mll5655
CC1419

>COG3803 (Putative duplication confidence score 1.000)
CLUSTER 1
PA2878
RSc2089
AGc189
SMa1626
SMc00282
SMc04178
BMEI0803
mlr0784
CC2122
CLUSTER 2
PA5109

>COG3845 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0887
VNG0901G
PH1713
PAB0303
PAE3120
PAE3413
APE0063
APE2588
TM0103
DR0957
CAC0703
L165279
SPy1227
SP0846
lin1426
BS_yufO
alr5362
PA0136
RSc2173
AGc202
AGc3297
SMa1509
SMa2127
SMa2365
SMb20124
SMc00245
SMc04127
BMEII0085
BMEII0698
mll0504
mll4176
mlr3154
mlr6802
mlr7066
TP0321
BB0677
UU015
MYPU_6190
MPN258
MG119
CLUSTER 2
TP0300

>COG3851 (Putative duplication confidence score 0.667)
CLUSTER 1
uhpB
ZuhpB
ECs4605
STM3789
PM1339
CLUSTER 2
Z0462
ECs0417
VCA0683

>COG3858 (Putative duplication confidence score 1.000)
CLUSTER 1
CAC1556
CAC2747
BS_yaaH
BS_ydhD
BS_ykvQ
BS_yvbX
BH2292
XF0848
CLUSTER 2
BH0017
BH3513

>COG3862 (Putative duplication confidence score 1.000)
CLUSTER 1
PAB0185
TM1434
FN0181
CAC1324
CLUSTER 2
CAC0013

>COG3870 (Putative duplication confidence score 1.000)
CLUSTER 1
DR1423
CAC0299
SA0441
lin2840
BS_yaaQ
BH0043
CLUSTER 2
BH0950

>COG3878 (Putative duplication confidence score 0.500)
CLUSTER 1
FN1221
SA0761
CLUSTER 2
DR2173_2
CAC0820
SAS022
lin2486
lin2487
BS_ywqG

>COG3903 (Putative duplication confidence score 0.500)
CLUSTER 1
Rv0386_2
Rv0890c_1
Rv0894
Rv1358_2
Rv2488c_2
MT0399_2
MT0914_1
MT0918
MT1402_2
MT2563_2
ML1753_2
mlr6681_2
mlr6873_2
CLUSTER 2
SMa1591_3
SMa1789_3
SMc01491_3
mll0576_3

>COG3914 (Putative duplication confidence score 1.000)
CLUSTER 1
slr1816
all0562
AGl1760
CC0119_2
CC1107
CC3718
CLUSTER 2
alr0558_2

>COG3920 (Putative duplication confidence score 0.800)
CLUSTER 1
MA0203_4
MA0490_2
MA0551_4
MA0552_2
MA0619_3
MA0620_3
MA0758_2
MA0759_2
MA0970_4
MA1267_3
MA1274_2
MA1322_2
MA1463_2
MA1470_2
MA1627_2
MA1628_4
MA1630_4
MA1645_2
MA1646_4
MA1704_2
MA1844_2
MA1878_3
MA1991_2
MA2082_2
MA2266_4
MA2732_2
MA2757_2
MA2784_2
MA2890_4
MA3346_2
MA3370_3
MA3481_3
MA3543_2
MA4026_2
MTH1124
MTH123
MTH1260
MTH174_3
MTH292
MTH356
MTH360_3
MTH446_3
MTH459
MTH468_3
MTH619_3
MTH823_3
MTH901_2
MTH902_3
MTH985
FN0077
FN1915
CAC2720
Rv3220c
MT3316
ML0803
lin1137
slr1212_3
all1280_4
all2095_3
all2239_4
all3347_2
alr5151_2
asr0358
AGc3610_2
AGpA543_2
BMEI0370
mll2301
mlr1749
mlr5739_2
mlr8084_2
mlr9681_2
CC0285_2
CC3198
CC3474
CLUSTER 2
AGc3616_2
AGl1379
AGl1382
AGpA130
AGpA542_2
AGpA788_2
SMa0113_2
SMa1001
SMa1696
SMa2063
SMb20515_4
SMb20933_4
SMc00322
SMc01507_3
BMEI0374
BMEII0679_2
mll1798_2
mll3709_2
mll9598
mll9655_2
mlr3690_3
mlr3704
mlr6761_2
mlr8083
mlr9591_2
mlr9680
CC0629
CC0836_2
CC1683
CC2554
CC2909
CC3048_2
CC3058_2
CC3170_2
CC3560_3

>COG3931 (Putative duplication confidence score 1.000)
CLUSTER 1
PA5509
AGc3887
SMc01600
SMc02354
BMEII0555
mll3076
CLUSTER 2
AGl2148
SMc04007
BMEI0290
mlr3822

>COG3937 (Putative duplication confidence score 1.000)
CLUSTER 1
MA2622
CAC0034
BH2709
slr0455
all1164
CLUSTER 2
slr0058
alr0576

>COG3938 (Putative duplication confidence score 1.000)
CLUSTER 1
PA1255
AGc701
AGl395
SMb20270
BMEI1586
mlr6810
CLUSTER 2
PA1268
AGl1800
SMb20268
BMEI0257
mll3979

>COG3948 (Putative duplication confidence score 1.000)
CLUSTER 1
STM2708
PA0618
XF0724
XF2488
RSc1923
CLUSTER 2
STM4202

>COG3950 (Putative duplication confidence score 1.000)
CLUSTER 1
STM2746
CLUSTER 2
STM3753
VC2386
SMc02153

>COG3957 (Putative duplication confidence score 1.000)
CLUSTER 1
SPBC24C6.09c
CAC1343
L138230
slr0453
all1483
all2567
PA3613
SMa1084
SMc04146
BMEII0881
mlr6575
CLUSTER 2
sll0529
alr1850

>COG3961 (Putative duplication confidence score 1.000)
CLUSTER 1
MA0594
YDL080c
YDR380w
YGR087c
YLR044c
YLR134w
SPAC13A11.06
SPAC3G9.11c
CAP0025
Rv0853c
MT0876
ML2167
L138640
SA0182
STM2405
CLUSTER 2
SPAC186.09
SPAC1F8.07c

>COG3964 (Putative duplication confidence score 0.500)
CLUSTER 1
STM4413
mll4451
CLUSTER 2
STM4445
AGl3103

>COG3975 (Putative duplication confidence score 0.500)
CLUSTER 1
SSO2575
slr0031
alr2326
NMB1726
NMA1981
RSc2890
CC2539
CLUSTER 2
CC3051
CC3287
RC0445

>COG4043 (Putative duplication confidence score 1.000)
CLUSTER 1
MK0492_2
PH0355
PAB1060
BH0816
CLUSTER 2
PH0447
PAB1310

>COG4063 (Putative duplication confidence score 1.000)
CLUSTER 1
MA0272
MTH1062
MTH1159
MJ0851
MK0660
CLUSTER 2
MA1805

>COG4075 (Putative duplication confidence score 1.000)
CLUSTER 1
MTH1110
MJ1244
MK1106
CLUSTER 2
MJ1245

>COG4102 (Putative duplication confidence score 0.500)
CLUSTER 1
RSc1651
CC2414
CLUSTER 2
AGl3459
mll5452
CC1979

>COG4103 (Putative duplication confidence score 1.000)
CLUSTER 1
VC1379
AGc4817
SMc03235
BMEI0180
mll4217
CLUSTER 2
BMEI0699
mll1192

>COG4115 (Putative duplication confidence score 0.500)
CLUSTER 1
Rv3358
MT3466
SP1740
SA2195
asl0171
AGc3658
CLUSTER 2
SA2245
RC0291

>COG4129 (Putative duplication confidence score 1.000)
CLUSTER 1
CAC2484
SPy1253
SP1754
SA1344
lin1983
BS_yqjA
BH1464
CLUSTER 2
CAC3439
Cgl2711
Rv2571c
MT2647
SPy1879
SP0500
SA1682
SA1705
lin1794
BS_ygaE
BH0942
BH2644
AGc2137
BMEI1556

>COG4154 (Putative duplication confidence score 0.500)
CLUSTER 1
SP2165
fucU
ZfucU
ECs3664
STM2978
HI0612
SMc02173
mll7581
CLUSTER 2
AGc3656
SMb21302
BMEI0667
mlr8491

>COG4158 (Putative duplication confidence score 1.000)
CLUSTER 1
Z5690
ECs5072
YPO3963
PM1378
mll3597
CLUSTER 2
mll3405

>COG4178 (Putative duplication confidence score 1.000)
CLUSTER 1
YKL188c
YPL147w
Rv1819c
MT1867
ML2084
sll0182
all2650
alr2663
yddA
ZyddA
ECs2101
HI0036
HI1467
PM0041
PM1072
NMB1077
RSc0456
AGl1966
AGl3495
SMb20937
BMEI0520
mll3543
mll4764
CLUSTER 2
BMEII0976
mlr0519

>COG4190 (Putative duplication confidence score 0.500)
CLUSTER 1
VNG0040C
VNG6001H
VNG7001
SMc01416
CLUSTER 2
PA2736
SMa2167

>COG4191 (Putative duplication confidence score 1.000)
CLUSTER 1
VC1925
VCA0141
PA1336
PA5165
PA5512
RSc0331
RSp0008
AGc174
AGl3043
SMb20612
SMb21201
mlr5841
mlr7238
CLUSTER 2
RSc2432_1

>COG4220 (Putative duplication confidence score 1.000)
CLUSTER 1
nohA
nohB
Z1882
ECs1629
ECs2180
STM2609
XF0710
XF2501
AGc800_2
CLUSTER 2
Z2124
Z2365
ECs1101
ECs1105
ECs2736

>COG4222 (Putative duplication confidence score 1.000)
CLUSTER 1
DRB0111_1
all0275_1
CLUSTER 2
DRB0111_3
slr1087
all0275_3
all3208
alr4238_1
alr4238_3
YPO3640
Cj0728
AGc2125
AGc4118
SMc00620
mlr1518

>COG4231 (Putative duplication confidence score 0.667)
CLUSTER 1
AF1489
MA1022
MA1727
MA1982
MTH1852
Ta1012
TVN0577
PH0765
PH1138
PAB0718
PAB0855
PAE3477
PAE3478
SSO2067
CAC2001
RSc1829
mlr5448
CLUSTER 2
RSc3122_1
mlr5175_1
CC3176_1

>COG4242 (Putative duplication confidence score 1.000)
CLUSTER 1
slr2001
all0571
all3880
CC0577
CLUSTER 2
all2506

>COG4244 (Putative duplication confidence score 0.500)
CLUSTER 1
aq_811
all3197
PA2415
SMb21357
SMb21365
mll6613
CLUSTER 2
sll1485
sll1486
alr2729
alr2730

>COG4249 (Putative duplication confidence score 1.000)
CLUSTER 1
all0283_1
all0284_1
all2124_1
all3226_1
all5017
alr3676_1
XF2779_3
mlr3303_2
CLUSTER 2
mll2372
mll5190_1
mlr1170_1
mlr1804_1
mlr2366
mlr3463
mlr7482

>COG4251 (Putative duplication confidence score 0.500)
CLUSTER 1
DRA0050
slr0473
all2899
alr3157
AGc3620
CLUSTER 2
PA4117
AGc3927_1

>COG4257 (Putative duplication confidence score 1.000)
CLUSTER 1
sll0173
PA0468
RSp0135
CLUSTER 2
RSc3155

>COG4258 (Putative duplication confidence score 0.500)
CLUSTER 1
Z4861
ECs4336
RSp0362
CLUSTER 2
XF0777
RSc0429

>COG4261 (Putative duplication confidence score 0.500)
CLUSTER 1
Z4858_2
ECs4333_2
RSp0366_2
CLUSTER 2
XF0775
RSc0431

>COG4263 (Putative duplication confidence score 0.500)
CLUSTER 1
PA3392
RSp1368
BMEII0973
CLUSTER 2
SMa1182
BMEII0974

>COG4264 (Putative duplication confidence score 1.000)
CLUSTER 1
VNG6212G
SA0116
SA1981
SA1983
BH2622
all0394
RSp0421
SMa2404
CLUSTER 2
VNG6216G
SA0114
SA0117
BH2618
all0390
YPO0992
YPO1532
YPO1538
RSp0419
RSp0422
SMa2410

>COG4275 (Putative duplication confidence score 1.000)
CLUSTER 1
TVN1199
RSp0556
SMc00911_2
mlr5406_2
CLUSTER 2
RSp0554

>COG4284 (Putative duplication confidence score 0.750)
CLUSTER 1
YDL103c
SPBC1289.08
ECU11g1780
SA1974
CT715
CPn0856
CLUSTER 2
YHL012w
YKL035w
SPCC1322.04
SPCC794.10
ECU03g0280
BB0003

>COG4311 (Putative duplication confidence score 0.750)
CLUSTER 1
PA5417
RSc1102
RSp0047
AGl1276
SMc02607
msl5231
msl6239
msl7305
msr1274
CLUSTER 2
AGl1105
AGl1575
SMc03932
BMEI1721
msl3109

>COG4312 (Putative duplication confidence score 1.000)
CLUSTER 1
PA1350
RSc1113
AGc1560
SMb21565
SMc00803
mll1876
mlr1911
mlr3755
CLUSTER 2
SMc01408
mll2522

>COG4321 (Putative duplication confidence score 0.500)
CLUSTER 1
PA4335
RSc0415
AGl852
BMEI0792
CLUSTER 2
AGc3716
SMc01452
BMEI0601
mll6467
msr1476

>COG4335 (Putative duplication confidence score 1.000)
CLUSTER 1
BS_yhaZ
PM1750
AGl2657
CLUSTER 2
AGl2659

>COG4341 (Putative duplication confidence score 1.000)
CLUSTER 1
all2220
PA2804
RSc3336
mll1439
CLUSTER 2
mlr5040

>COG4383 (Putative duplication confidence score 0.500)
CLUSTER 1
ECs4970
HI1501
CLUSTER 2
HI1571
NMB1095
NMA1314
NMA1851

>COG4395 (Putative duplication confidence score 0.571)
CLUSTER 1
VC1964
PA5528
RSc0459
AGl2266
SMc04202
BMEI0729
mll7160
CLUSTER 2
AGc12
SMc02786
BMEI2053
mlr4544
CC3741
RP434
RC0604

>COG4403 (Putative duplication confidence score 1.000)
CLUSTER 1
CAC0082
SPy1914
SP1950
BH0452
BH0455
all2025
CLUSTER 2
SP0380

>COG4451 (Putative duplication confidence score 0.667)
CLUSTER 1
sll1031_2
all0865_2
alr1533_2
CLUSTER 2
slr0012
alr1526
SMb20197

>COG4453 (Putative duplication confidence score 0.714)
CLUSTER 1
Rv0918
MT0944
Z4776
ECs4261
STM3652
STM4317
XFa0024
SMc00740
CLUSTER 2
MT2871
Z4833
ECs4308
STM2904
VCA0319
VCA0482
HI0420
RSp1627
SMc04222

>COG4461 (Putative duplication confidence score 1.000)
CLUSTER 1
Rv1541c
MT1593
YPO2684
STM1236
PA1114
AGc3508
mlr0530
CLUSTER 2
YPO0702

>COG4465 (Putative duplication confidence score 1.000)
CLUSTER 1
CAC1786
L0243
SPy1777
SP1584
SA1098
lin1319
BS_codY
BH2462
CLUSTER 2
L0244

>COG4473 (Putative duplication confidence score 1.000)
CLUSTER 1
L57113
SPy1728
SP0523
SA1654
lin2317
BS_ecsB
BH1192
CLUSTER 2
BS_ythQ

>COG4474 (Putative duplication confidence score 1.000)
CLUSTER 1
L131937
SPy1647
SP0371
SA1280
lin2003
BS_ypsA
BH1768
CLUSTER 2
BS_yoqJ

>COG4533 (Putative duplication confidence score 1.000)
CLUSTER 1
DRB0042
lin2150
BS_yhjP
BH1159
yabN
ZyabN
ECs0074
YPO0524
STM0109
STM2759
STM3860
VC1647
VCA0578
CLUSTER 2
ybaE
ZybaE
ECs0499
YPO3149
STM0456

>COG4577 (Putative duplication confidence score 1.000)
CLUSTER 1
FN0082
FN0083
lin1115
lin1122
lin1123
lin1142
lin1144
sll1028
sll1029
slr0436
slr1838
slr1839
all0863
all0867
all0868
alr0317
alr0318
cchA
eutK
Z3703
ZcchA
ECs3309
ECs3319
STM2038
STM2045
STM2046
STM2455
STM2465
CLUSTER 2
lin1107
lin1149
STM2054

>COG4581 (Putative duplication confidence score 1.000)
CLUSTER 1
YJL050w
YLR398c
SPAC17H9.02
SPAC6F12.16c
SPCC550.03c
ECU04g0910
ECU04g1290
Cgl1453
Cgl1878
Rv2092c
MT2153
ML1333
slr0451
alr0489
CLUSTER 2
SPAC694.02
ECU05g0940

>COG4585 (Putative duplication confidence score 1.000)
CLUSTER 1
DR0577
DR1227_2
DR1556
DRA0009
CAC0239
CAC0864
CAC1454
CAC2253
CAC2940
CAC3430
Cgl0594
Cgl0924
Cgl1964
Cgl2871
Rv0845
Rv2027c_2
Rv3132c_2
MT0867
MT2086_2
MT3218_2
L0126
SPy1622
SP0386
SP2001
SA1158
SA1667_2
SA1701
SA2180
lin1020
BS_comP
BS_degS
BS_ydfH
BS_yfiJ
BS_yhcY_2
BS_yocF
BS_yvfT
BS_yvqE
BS_yxjM
BH0582
BH0784
BH1050
BH1199
BH2096
BH2214_2
BH3629
slr0311_3
all4636
alr2137_3
PA0600_3
PA1979
RSc0191_2
RSc0289_2
RSc2311_2
RSc3160
AGl1636
SMa0204
SMb20077
SMb20467
SMb21519
mll4568
CC1149
CLUSTER 2
Cgl2706

>COG4588 (Putative duplication confidence score 1.000)
CLUSTER 1
Z2053
ECs1772
VC0841
Cj0289c
SMc02156
CLUSTER 2
Cj0778

>COG4598 (Putative duplication confidence score 1.000)
CLUSTER 1
hisP
ZhisP
ECs3190
YPO2777
STM2351
VC1864
PA0892
PA2926
PA5152
AGc4296
SMc02260
mll5204
CLUSTER 2
AGpT69

>COG4603 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0888
VNG0898G
PH1712
PAB0304
PAE3119
PAE3412
APE0065
APE2587
TM0104
DR0250_2
CAC0704
L166804
SPy1226
SP0847
lin1427
BS_yufP
alr5367
PA0137
RSc2174
AGc205
AGc3295
SMa1513
SMa2125
SMa2367
SMb20126
SMc00243
SMc04126
BMEII0086
BMEII0699
BMEII0700
mll0503
mll4175
mlr3155
mlr6803
mlr7062
TP0301
TP0322
BB0678
UU014_1
MYPU_6180
MPN259
MG120
CLUSTER 2
BB0317

>COG4608 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1771
VNG2343G
VNG2365G
VNG2526G_2
MA0298
MA0697
MA0878
MA1244
MA2474
MA2478
MA3047
MA3456
MA3465
MA3909
MA4253
MA4597
Ta0266
Ta1326
TVN1328
PH0507
PH0811
PH1413
PH1958
PAB0095
PAB0631
PAB1197
PAB1347
PAB1875
PAE1296
PAE3316
SSO1277
SSO1279
SSO1281
SSO2615
SSO2672
SSO3045
APE0300
APE1402
APE1576
APE2263
aq_2122
TM0027
TM0057
TM0075
TM0304
TM0500
TM0530
TM1063
TM1151
TM1196
TM1219
TM1750
FN0400
FN1109
FN1363
FN1525
FN1648
DR1567
CAC0180
CAC3183
CAC3628
CAC3635
CAC3641
Cgl2602
L150031
L92192
SPy0297
SP1887
SA0848
SA0852
SA1211
lin2296
BS_appF
BS_oppF
BS_ykfD
BH0027
BH0351
BH0571
BH1800
BH3639
BH3645
dppF
oppF
ZdppF
ZoppF
ECs1747
ECs4420
YPO2186
YPO3999
STM1742
STM3626
VC0616
VC1095
PA4506
HI1120
HI1184
PM0240
PM1906
RSc1885
RSc2866
HP0302
jhp0287
Cj1580c
AGc2214
AGl1474
AGl2779
AGl3198
AGl359
AGpA367
AGpT260
SMa0110
SMa1370
SMa1646
SMa2079
SMb20479
SMc00790
SMc02424
SMc03126
BMEI0438
BMEII0199
BMEII0205
BMEII0223
BMEII0288
BMEII0508
BMEII0864
mll0595
mll5436
mll9145
mlr3401
mlr5420
mlr5895
mlr6086
mlr9271
CT689
CPn0683
BB0335
MYPU_2860_1
MYPU_2860_3
MPN218_1
MPN218_3
MG080_1
MG080_3
CLUSTER 2
MYPU_2560_2

>COG4623 (Putative duplication confidence score 1.000)
CLUSTER 1
yfhD
ZyfhD
ECs3424
YPO2922
STM2567
VC0866
PA3764
HI0232
PM0045
CLUSTER 2
PA2865

>COG4628 (Putative duplication confidence score 1.000)
CLUSTER 1
DR0127_1
YPO1157
VC1816
CLUSTER 2
VC1100

>COG4637 (Putative duplication confidence score 1.000)
CLUSTER 1
all3132
all8080
PA0787
SMc02491
CLUSTER 2
alr0507

>COG4648 (Putative duplication confidence score 1.000)
CLUSTER 1
Z4855
ECs4330
NMA1954
RSp0368
CLUSTER 2
RSc0433

>COG4652 (Putative duplication confidence score 0.500)
CLUSTER 1
L13272
SA0886
SAP020
BH0280
CLUSTER 2
L80344
SP0686
SP1956
SP1988

>COG4663 (Putative duplication confidence score 0.500)
CLUSTER 1
slr1962
all3028
AGc426
AGl2908
AGpA385
SMc04251
BMEI1579
mlr5166
CLUSTER 2
VC0488
VC1273
SMc04289

>COG4664 (Putative duplication confidence score 1.000)
CLUSTER 1
sll1103
alr3027
VC1275
AGl2910
AGpA387
SMc04249
BMEI1580
mll5170
CLUSTER 2
SMc04283

>COG4665 (Putative duplication confidence score 1.000)
CLUSTER 1
sll1102
alr3026
VC1274
AGl2913
AGpA389
SMc04248
BMEI1581
mll5171
CLUSTER 2
SMc04287

>COG4666 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0466
AF0636
AF0989
VNG0537C
APE2133
APE2542
DR1653
BH0602
BH2938
BH2945
VC0429
VCA0146
PA5544
PM0473
PM1580
SMb20291
BMEI0797
CLUSTER 2
DR1650

>COG4668 (Putative duplication confidence score 0.500)
CLUSTER 1
DRB0075_1
CAC0156
L32907
SP0396
SA1962
BS_mtlA_2
BH3852
fruB_1
mtlA_2
ZfruB_1
ZmtlA_2
ECs3061_1
ECs4475_2
YPO1298_1
YPO4068_2
STM2206_1
STM3256_1
STM3685_2
BU572_2
VCA0518_1
VCA1045_2
PA3562_1
HI0448_1
PM1061_2
PM1797_1
RSc2861_1
MPN653
CLUSTER 2
lin0425_2
STM4448_2

>COG4671 (Putative duplication confidence score 1.000)
CLUSTER 1
sll1722
all5196
alr5197
AGc4693
SMb21264
mlr3248
CLUSTER 2
alr5198
AGc4697
SMb21266
mlr3252

>COG4676 (Putative duplication confidence score 1.000)
CLUSTER 1
yfaP
Z3478
ECs3108
PA4487
RSc3027
CLUSTER 2
PA4492
RSc3028

>COG4678 (Putative duplication confidence score 0.500)
CLUSTER 1
slr0795
slr1966
alr2752
CLUSTER 2
all7671
Z1876
ECs1622
RSc1700

>COG4682 (Putative duplication confidence score 0.750)
CLUSTER 1
BS_yubF
yiaA
ZyiaA
ECs4445
YPO0112
RSc0141
CLUSTER 2
yiaB
ZyiaB
ECs4446
STM3659

>COG4697 (Putative duplication confidence score 1.000)
CLUSTER 1
PH0222
PAB0137
SSO3037
APE0560
CLUSTER 2
SSO3038

>COG4705 (Putative duplication confidence score 0.500)
CLUSTER 1
all7626
RSc3405
CLUSTER 2
RSp0114
mlr4456

>COG4722 (Putative duplication confidence score 0.500)
CLUSTER 1
CAC0062
L63101
SPy0698
SPy1447
lin2567
BS_yomH
CLUSTER 2
SPy0995
BH0013
BH0961
BH3517

>COG4750 (Putative duplication confidence score 0.500)
CLUSTER 1
FN1237_1
SP1267
HI1539
CLUSTER 2
FN1668
TP0107_1

>COG4759 (Putative duplication confidence score 0.500)
CLUSTER 1
Cgl0602
all1981
alr2582
alr2589
CLUSTER 2
sll1203
all2608
all2617
alr2187
alr2660

>COG4767 (Putative duplication confidence score 1.000)
CLUSTER 1
CAC0652
CAC0829
CAC1444
Cgl2952
Cgl2953
L188881
L98876
SP0049
SP0769
lin0486
lin1455
lin1804
lin1900
BH2294
CLUSTER 2
BH3967

>COG4770 (Putative duplication confidence score 0.714)
CLUSTER 1
VNG1532G
Cgl0680
Rv2501c
Rv3285
MT2576
MT3384
ML0726
PA2012
PA2891
RSc0265
AGl1864
AGl2704
SMb21124
BMEI1925
mll6011
mll7727
CC2168
CLUSTER 2
AGl580GM
SMb20756
BMEI0800
mll0871
CC2179
RP618
RC0959

>COG4771 (Putative duplication confidence score 1.000)
CLUSTER 1
cirA
Z1178
Z1617
ZcirA
ECs1360
ECs3047
YPO1313
STM2199
VC0475
PA1922
Cj0755
AGl1858
CLUSTER 2
fepA
ZfepA
ECs0623
STM0585
STM2777
PA0931
PA2688

>COG4773 (Putative duplication confidence score 1.000)
CLUSTER 1
fhuE
ZfhuE
ECs1480
YPO1537
STM1204
PA2398
PA4168
PA4221
NMB1829
NMB1882
NMA0575
NMA1662
CLUSTER 2
NMA1663

>COG4789 (Putative duplication confidence score 1.000)
CLUSTER 1
Z4195
ECs3731
STM2896
CLUSTER 2
ZescV
ECs4569
YPCD1.34c
YPO0266
STM1414
PA1703
RSp0863
mlr6348
CT090
CPn0323

>COG4790 (Putative duplication confidence score 1.000)
CLUSTER 1
Z4189
ECs3725
STM2890
CLUSTER 2
ZescR
ECs4583
YPCD1.44
YPO0270
STM1419
PA1693
RSp0860
mlr8766

>COG4798 (Putative duplication confidence score 0.500)
CLUSTER 1
alr7345
asr7339
CC2257
CLUSTER 2
mlr5283
msl1894
CC1026
CC1353

>COG4804 (Putative duplication confidence score 1.000)
CLUSTER 1
MA2412
MA2994
FN1448
yhcG
ZyhcG
ECs4093
STM3332
RSc2621
RC0365
RC0366
RC0740
CLUSTER 2
RC0367
RC0739

>COG4809 (Putative duplication confidence score 1.000)
CLUSTER 1
MA3562
CLUSTER 2
MA3563
MJ1604
PH0589
PH1645
PAB0967
PAB2013

>COG4816 (Putative duplication confidence score 1.000)
CLUSTER 1
FN0081
lin1141
eutL
Z3704
ECs3310
STM2456
CLUSTER 2
lin1116
STM2039

>COG4855 (Putative duplication confidence score 1.000)
CLUSTER 1
AF1427
MA3734
MTH102
CLUSTER 2
MA3735

>COG4869 (Putative duplication confidence score 0.500)
CLUSTER 1
TM0375
lin1146
CLUSTER 2
lin1124
STM2047

>COG4878 (Putative duplication confidence score 1.000)
CLUSTER 1
TM1409
FN0381
CAC0733
CLUSTER 2
FN0380

>COG4889 (Putative duplication confidence score 1.000)
CLUSTER 1
Cgl3009
Rv2024c
MT2082
pli0021
HP0668
jhp0612
CLUSTER 2
HP0669
jhp0613

>COG4891 (Putative duplication confidence score 1.000)
CLUSTER 1
MA3620
DR0722
Cgl1266
Cgl1268
CC0461
CLUSTER 2
DR0721

>COG4917 (Putative duplication confidence score 0.750)
CLUSTER 1
FN0075
lin1109
Z3167
ECs2808
STM2056
CLUSTER 2
eutP
Z3717
ECs3323
STM2469

>COG4926 (Putative duplication confidence score 1.000)
CLUSTER 1
CAC0063
L63739_1
SPy0700_1
lin2566
CLUSTER 2
SPy1446_1

>COG4928 (Putative duplication confidence score 0.667)
CLUSTER 1
MJ0182
TM0615
DRC0009
all7130_2
STM2238
AGpA30
CLUSTER 2
TM1189
Cgl1683
all7133

>COG4941 (Putative duplication confidence score 0.667)
CLUSTER 1
PA1351
RSp0636
mll7837
mlr2588
mlr4613
CC0389
CLUSTER 2
SMc01150
mll2869
CC1329_2

>COG4943 (Putative duplication confidence score 1.000)
CLUSTER 1
yjcC
ZyjcC
ECs5043
STM4264
CLUSTER 2
ylaB
ZylaB
ECs0510
STM0468
PA2200_2
XF0470
BMEI1448
BMEII0904

>COG4968 (Putative duplication confidence score 1.000)
CLUSTER 1
VC0857
PA4556
XF0033
XF0479
NMB0547
NMA0726
RSc0717
RSc0723
RSc2680
RSp1287
CLUSTER 2
NMB2016
NMA0424

>COG4969 (Putative duplication confidence score 1.000)
CLUSTER 1
aq_1433
aq_1434
ppdD
ZppdD
ECs0112
YPO3425
STM0144
VC2423
PA0659_3
PA4525
HI0299
PM0084
XF0487
XF0538
XF0539
XF1791
XF1792
XF2539
XF2542
NMB0890
NMA1110
RSc0557
RSc0558
CLUSTER 2
NMB0018
NMB0019
NMB0020
NMB0021
NMB0022
NMB0023
NMB0024
NMB0025
NMB0026
NMA0264
NMA0265
NMA0266
NMA0267
NMA0268
NMA0269
NMA0270
NMA0271
NMA0272

>COG4976 (Putative duplication confidence score 0.667)
CLUSTER 1
AGc3455
SMc00134
BMEI0923
CC2448
CLUSTER 2
AGc866
SMc02241
mlr5485

>COG4977 (Putative duplication confidence score 0.571)
CLUSTER 1
Z0442
Z2164
ECs0399
ECs2143
PA1850
PA3782
PA4436
AGc453
AGl2735
AGpA562
SMa1725
SMb20055
SMb20215
mll3844
mll5195
mlr2766
CC2960
CC3367
CLUSTER 2
PA0893
PA4184
PA5380
PA5389
RSc1098
RSc1108
RSp0044
RSp0054
RSp0068
AGc3247
AGl1109
AGl1272
AGpAbx241
SMa1476
SMc00256
SMc01636
SMc02609
SMc04169
BMEI0685
BMEI1615
mll2026
mll4501
mll5038
mll6236
mlr1251
mlr6241
mlr6509

>COG4978 (Putative duplication confidence score 1.000)
CLUSTER 1
MA0499
MA0516
MA0733
MA0989_2
MTH1066
MTH628
PAE1796
CAC3443_2
Cgl1396
Cgl1893
BS_bltR_2
BS_bmrR_2
BS_ydfL_2
BH3496_2
BH4047
all0345_2
CLUSTER 2
MA0732

>COG4988 (Putative duplication confidence score 0.600)
CLUSTER 1
FN1819
SPy1791
lin1097
HI0663m
PM1474
CLUSTER 2
Cgl1123
Rv1621c
MT1657
L110479
SA0639
lin2864
BS_cydC
BH3971
cydD
ZcydD
ECs0972
YPO1373
STM0957
VC1181
HI1157
PM0572
AGl1532
BMEII0762
CC0761

>COG4993 (Putative duplication confidence score 1.000)
CLUSTER 1
gcd
Zgcd
ECs0128
STM0169
PA2290
AGl1436
AGl2936
SMc00110
mll1500
CLUSTER 2
PA1982
SMb20173

>COG4995 (Putative duplication confidence score 1.000)
CLUSTER 1
sll0499_2
sll0638
slr0380
slr1753_3
slr1968_2
all0360
all1176_2
all1820_2
all2170_2
all4078_2
all4926_3
all5311_2
all7234_2
alr1398_2
alr7318_2
CC0601
CLUSTER 2
alr0963_2

>COG5005 (Putative duplication confidence score 0.500)
CLUSTER 1
ECs4972
HI1503
CLUSTER 2
HI1568
NMA1316
NMA1849

>COG5006 (Putative duplication confidence score 1.000)
CLUSTER 1
DR1295
Cgl0589
ybiF
ZybiF
ECs0891
YPO2507
STM0832
VC1311
PA1360
RSc2802
mll1936
CC3468
CLUSTER 2
Cgl2095
mlr1493

>COG5008 (Putative duplication confidence score 1.000)
CLUSTER 1
VC0463
PA0396
XF1632
NMB0768
NMA0979
RSc2681
CLUSTER 2
NMB0051
NMA0219

>COG5020 (Putative duplication confidence score 1.000)
CLUSTER 1
YBR199w
YBR205w
YDR483w
YIL085c
YJL139c
YKR061w
YNL029c
YOR099w
YPL053c
SPBC16H5.09c
SPBC1773.08c
SPBC19C7.12c
SPBC32H8.08c
SPCC777.07
ECU04g1130
CLUSTER 2
SPAC959.04c

>COG5022 (Putative duplication confidence score 1.000)
CLUSTER 1
YAL029c
YHR023w
YOR326w
SPAC4A8.05c
SPBC2D10.14c
SPCC1919.10c
SPCC645.05c
ECU04g1000
ECU09g1970
CLUSTER 2
YKL129c
YMR109w
SPBC146.13c

>COG5023 (Putative duplication confidence score 1.000)
CLUSTER 1
YFL037w
YML085c
YML124c
SPBC16A3.15c
SPBC26H8.07c
SPBC800.05c
ECU03g0820i
ECU07g1190
CLUSTER 2
YLR212c
SPBC32F12.04
ECU08g0670

>COG5024 (Putative duplication confidence score 1.000)
CLUSTER 1
YAL040c
YMR199w
YPL256c
CLUSTER 2
YDL155w
YGR108w
YGR109c
YLR210w
YPR119w
YPR120c
SPAPB2B4.03
SPBC16E9.17c
SPBC19F5.01c
SPBC582.03
SPCC4E9.02
ECU08g0260
ECU09g1030

>COG5027 (Putative duplication confidence score 1.000)
CLUSTER 1
YBL052c
YOR244w
SPAC17G8.13c
SPAC637.12c
ECU09g1310
ECU10g0660
CLUSTER 2
YMR127c

>COG5028 (Putative duplication confidence score 1.000)
CLUSTER 1
YHR098c
YIL109c
YNL049c
SPAC22F8.08
SPBC4.03c
ECU02g1230
CLUSTER 2
ECU02g1460

>COG5029 (Putative duplication confidence score 1.000)
CLUSTER 1
YDL090c
YPR176c
SPAC167.02
SPAC17G6.04c
ECU08g1290
CLUSTER 2
YGL155w
SPAC2E1P5.04c

>COG5032 (Putative duplication confidence score 1.000)
CLUSTER 1
YBL088c
YBR136w
YHR099w
YJR066w
YKL203c
YLR240w
YLR305c
YNL267w
SPAC1F5.11c
SPAC22E12.16c
SPAC458.05
SPBC216.05
SPBC216.07c
SPBC30D10.10c
SPBC577.06c
SPBP16F5.03c
SPCC23B6.03c
ECU02g1130
ECU03g1100
ECU10g0590
ECU11g0450
CLUSTER 2
ECU05g0540

>COG5033 (Putative duplication confidence score 1.000)
CLUSTER 1
YNL107w
SPAC17G8.07
ECU03g1600
CLUSTER 2
YOR213c
YPL129w
SPAC22H12.02

>COG5036 (Putative duplication confidence score 0.667)
CLUSTER 1
YFL004w_1
YPL019c_1
SPAC14C4.11_1
CLUSTER 2
YJL012c
SPCC1322.14c_1
ECU06g1420i_1

>COG5038 (Putative duplication confidence score 1.000)
CLUSTER 1
YML072c
YNL087w
YOR086c
SPAPYUK71.03c
SPCC962.01
ECU01g1250
CLUSTER 2
SPCP31B10.06

>COG5039 (Putative duplication confidence score 0.500)
CLUSTER 1
SPAC8F11.10c
BS_yveS
BS_yxaB
CLUSTER 2
BS_yvfF
all3271
alr3066

>COG5044 (Putative duplication confidence score 1.000)
CLUSTER 1
YER136w
YOR370c
SPAC22H10.12c
SPBC15C4.03
ECU02g1410
CLUSTER 2
ECU11g0350

>COG5047 (Putative duplication confidence score 1.000)
CLUSTER 1
YHR035w
CLUSTER 2
YPR181c
SPBC776.04
SPCC31H12.07
ECU11g0790

>COG5049 (Putative duplication confidence score 1.000)
CLUSTER 1
YGL173c
SPAC17A5.14
CLUSTER 2
YOR048c
SPAC26A3.12c
ECU09g0760

>COG5052 (Putative duplication confidence score 1.000)
CLUSTER 1
YPR028w
SPBC30D10.09c
SPCC830.08c
ECU09g1950
CLUSTER 2
ECU05g1180

>COG5053 (Putative duplication confidence score 1.000)
CLUSTER 1
YOL139c
SPAC16E8.15
SPBC1709.18
ECU08g0900
CLUSTER 2
ECU11g1350

>COG5055 (Putative duplication confidence score 1.000)
CLUSTER 1
YDL059c
CLUSTER 2
YML032c
SPAC30D11.10
SPBC119.14
ECU09g0930

>COG5057 (Putative duplication confidence score 1.000)
CLUSTER 1
YIL153w
SPAC4F10.04
ECU06g0720
CLUSTER 2
YPL152w
SPAC1782.05

>COG5059 (Putative duplication confidence score 1.000)
CLUSTER 1
YBL063w
YEL061c
YGL216w
YKL079w
YPL155c
SPAC144.14
SPAC1834.07
SPAC25G10.07c
SPBC15D4.01c
SPBC1604.20c
SPBC2D10.21c
SPBC2F12.13
SPBC649.01c
ECU05g0060_1
ECU08g0890
ECU10g1000
ECU11g0470
ECU11g2020
CLUSTER 2
YPR141c
SPAC3A11.14c
SPAC664.10
ECU10g0320

>COG5068 (Putative duplication confidence score 0.667)
CLUSTER 1
YBR182c
YPL089c
SPBC19G7.06
SPBC317.01
CLUSTER 2
YMR042w
YMR043w
SPAC11E3.06
ECU07g1740

>COG5069 (Putative duplication confidence score 0.500)
CLUSTER 1
YDR129c
SPBC1778.06c
CLUSTER 2
SPAC15A10.08
ECU09g0290

>COG5073 (Putative duplication confidence score 1.000)
CLUSTER 1
YBR105c
YGR066c
SPAC3H1.14
ECU03g0570
CLUSTER 2
SPAP8A3.13c

>COG5076 (Putative duplication confidence score 1.000)
CLUSTER 1
YBR081c
YDL070w
YGR056w
YGR252w
YIL126w_2
YKR008w
YLR357w
YLR399c
YOR290c_2
SPAC1250.01_2
SPAC1952.05
SPAC631.02
SPBC1734.15
SPBC25H2.11c
SPBC4B4.03
SPCC1620.14c_2
ECU08g1560
ECU08g1640
ECU10g0760_2
ECU10g1430
CLUSTER 2
SPBC21D10.10

>COG5080 (Putative duplication confidence score 1.000)
CLUSTER 1
YGL198w
CLUSTER 2
YGR172c
SPAC644.13c
SPCC61.04c
ECU03g0590

>COG5096 (Putative duplication confidence score 1.000)
CLUSTER 1
YDR238c
SPBC146.14c
ECU08g1100
CLUSTER 2
YGR261c
YJR005w
YKL135c
SPAC23H3.06
SPBC2G2.06c
SPBC947.02
ECU06g0770

>COG5099 (Putative duplication confidence score 1.000)
CLUSTER 1
YGL014w
YJR091c
YLL013c
YPR042c
SPAC1687.22c
SPAC4G8.03c
SPAC4G9.05
SPAC6G9.14
SPBC56F2.08c
SPBP35G2.14
SPCC1682.08c
ECU11g1730
CLUSTER 2
YGL178w

>COG5147 (Putative duplication confidence score 1.000)
CLUSTER 1
YBR049c
YDR026c
SPAC22F8.07c
SPBC1198.11c
ECU06g1020
CLUSTER 2
YKR099w
YMR213w
SPAC644.12
ECU02g0420
ECU11g1690

>COG5158 (Putative duplication confidence score 1.000)
CLUSTER 1
YDR164c
YDR189w
YGL095c
SPAC2G11.03c
SPCC584.05
SPCC74.01
ECU02g0430
ECU03g0900
ECU06g1460
CLUSTER 2
YLR396c
SPBC1703.15c

>COG5160 (Putative duplication confidence score 1.000)
CLUSTER 1
YIL031w
SPAC17A5.07c
CLUSTER 2
YPL020c
SPBC19G7.09
ECU05g0760

>COG5184 (Putative duplication confidence score 1.000)
CLUSTER 1
YAL020c
YGL097w
SPAC10F6.04
SPBC557.03c
SPCC330.11_2
ECU04g1500
CAC2722
CLUSTER 2
YLR077w

>COG5190 (Putative duplication confidence score 1.000)
CLUSTER 1
YHR004c
YLL010c
YLR019w
SPAC2F7.02c
SPBC3B8.10c
ECU10g1270
CLUSTER 2
YMR277w
YPL063w
SPAC19B12.05c
SPBC17A3.01c
ECU07g0890
ECU10g0580

>COG5193 (Putative duplication confidence score 0.667)
CLUSTER 1
YCL037c
YDR515w
SPAC1527.03
CLUSTER 2
YDL051w
SPAC57A10.10c
ECU09g0680

>COG5194 (Putative duplication confidence score 1.000)
CLUSTER 1
YDL008w
SPAC343.03
CLUSTER 2
YOL133w
SPAC23H4.18c
ECU01g1095

>COG5239 (Putative duplication confidence score 1.000)
CLUSTER 1
YAL021c_2
YOL042w
SPCC31H12.08c_2
ECU11g0770_2
CLUSTER 2
YML118w
YMR285c
SPBC9B6.11c

>COG5253 (Putative duplication confidence score 1.000)
CLUSTER 1
YDR208w
SPAC19G12.14
ECU03g0330
CLUSTER 2
YFR019w_3
SPBC6B1.11c

>COG5256 (Putative duplication confidence score 1.000)
CLUSTER 1
AF0937
VNG2649G
MA1256
MTH1058
MJ0324
MK0247
Ta0444
TVN1051
PH1484
PAB0465
PAE3000
SSO0216
APE1844
YBR118w
YDR172w_2
YKR084c
YPR080w
SPAC23A1.10
SPBC2G5.08
SPBC839.15c
SPCC584.04
SPCC794.09c
ECU04g1100
ECU06g1440
CLUSTER 2
YOR076c
SPAP8A3.05

>COG5260 (Putative duplication confidence score 1.000)
CLUSTER 1
YNL299w
YOL115w
SPAC12G12.13c
SPAC19D5.03
SPAC821.04c
SPBC1685.06
SPCC663.12
ECU06g1520
CLUSTER 2
SPAC17H9.01

>COG5261 (Putative duplication confidence score 1.000)
CLUSTER 1
YPL242c
SPAC4F8.13c
ECU10g1740
CLUSTER 2
SPBC646.12c

>COG5264 (Putative duplication confidence score 1.000)
CLUSTER 1
YER072w
YJL012c-a
SPAC14C4.11_2
SPBC21B10.04c
SPCC1322.14c_2
ECU06g1420i_2
CLUSTER 2
YFL004w_2
YPL019c_2

>COG5265 (Putative duplication confidence score 1.000)
CLUSTER 1
YMR301c
SPAC15A10.01
SPCC737.09c
YPO2588
RSc0478
AGc1966
SMc00550
BMEI1492
mlr7818
CC1314
RP205
RC0268
RC0269
RC0270
RC0271
CLUSTER 2
SPCC74.01c

>COG5267 (Putative duplication confidence score 1.000)
CLUSTER 1
RSc1650
AGl3457
mll5453
CC1978
CLUSTER 2
CC2415

>COG5274 (Putative duplication confidence score 0.667)
CLUSTER 1
YGL055w_2
YMR272c_1
YNL111c
SPAC19G12.08_1
SPBC29A10.16c
SPCC1281.06c_2
SPCC16A11.10c
CLUSTER 2
YML054c_1
YMR073c
SPAC1F12.10
SPCC330.03c
ECU01g1115

>COG5282 (Putative duplication confidence score 0.667)
CLUSTER 1
VNG1497C
Rv3626c
MT3728
CLUSTER 2
Cgl0758
Rv3195
MT3287
ML0642

>COG5294 (Putative duplication confidence score 1.000)
CLUSTER 1
L106083
L177221
L193090
SA0358
lin2533
BS_yxeA
CLUSTER 2
SA0887
SAP021

>COG5316 (Putative duplication confidence score 1.000)
CLUSTER 1
MA1196
DR0969
DR1924
CC1037
CC1038
CLUSTER 2
DR1923

>COG5325 (Putative duplication confidence score 1.000)
CLUSTER 1
YOL018c
SPAC823.05c
ECU05g1220
CLUSTER 2
YOR036w
YOR106w
SPBC31E1.04

>COG5330 (Putative duplication confidence score 0.500)
CLUSTER 1
AGc1683
SMc00120
BMEI1354
mll7653
CLUSTER 2
AGc3197
SMc01015
CC0948
CC2323
CC2637

>COG5343 (Putative duplication confidence score 1.000)
CLUSTER 1
RSc2362
AGc3608
SMc01725
mll4823
CLUSTER 2
AGc840

>COG5349 (Putative duplication confidence score 1.000)
CLUSTER 1
AGc1409
SMc00014
SMc01488
BMEI1461
mlr7498
CC3115
CC3401
CLUSTER 2
AGc2394
SMc01366
BMEII0664
mlr0842
CC1021

>COG5352 (Putative duplication confidence score 1.000)
CLUSTER 1
SMc02139
BMEI1623
mll5645
CC2245
CLUSTER 2
CC1211

>COG5354 (Putative duplication confidence score 1.000)
CLUSTER 1
YGR054w
SPBC4B4.04
ECU11g0670
CLUSTER 2
YOR361c_2
SPAC25G10.08_2

>COG5371 (Putative duplication confidence score 1.000)
CLUSTER 1
YEL042w
SPAC824.08
ECU07g1260
CLUSTER 2
YER005w
SPCC11E10.05c

>COG5383 (Putative duplication confidence score 0.500)
CLUSTER 1
Rv3292
MT3391
Z2296
ECs2028
YPO1397
STM1624
SMc04383
BMEII0389
CLUSTER 2
ydcJ
Z2297
Z2298

>COG5386 (Putative duplication confidence score 1.000)
CLUSTER 1
SA0977
CLUSTER 2
SA0978
lin2289
lin2290
BH3298
BH3299

>COG5391 (Putative duplication confidence score 1.000)
CLUSTER 1
YDL113c
YDR425w
YJL036w
YMR004w
YOR357c
SPAC6F6.12
SPBC14F5.11c
SPBC1711.11
SPBC887.06c
SPCC16A11.08
SPCPJ732.01
ECU05g0840
CLUSTER 2
SPAC3A11.06

>COG5405 (Putative duplication confidence score 1.000)
CLUSTER 1
aq_1671
TM0521
SA1096
lin1317
BS_clpQ
BH2464
hslV
ZhslV
ECs4859
YPO0106
STM4092
BU578
VC2675
PA5053
HI0496
PM1749
XF1484
RSc0043
HP0515
jhp0464
Cj0663c
AGc70
SMc02575
BMEI2047
mll5007
CC3727
RP319
RC0433
BB0296
CLUSTER 2
RSc1602

>COG5411 (Putative duplication confidence score 1.000)
CLUSTER 1
YIL002c_2
YNL106c_2
YOL065c
YOR109w_2
SPBC2G2.02_2
SPBC577.13_2
ECU10g1370
CLUSTER 2
SPAC9G1.10c

>COG5430 (Putative duplication confidence score 1.000)
CLUSTER 1
YPO1695
YPO1698
YPO1699
YPO1700
PA4648
PA4649
PA4650
PA4653
RSc2692
RSc2695
RSc2696
RSp1497
RSp1500
AGl295
AGl303
mll7723
mll7726
RC0638
CLUSTER 2
RC0646

>COG5433 (Putative duplication confidence score 1.000)
CLUSTER 1
SPy0303
SPy1574
SPy1807
SPy2180
all8064
all8065
asr2499
b1458
b1459
ybfD
ybfL
yhhI
Z0271
Z0275
Z0700
Z0854
Z0856
Z0857
Z2253
Z2254
ECs0241
ECs0245
ECs0602
ECs0731
ECs2062
ECs2063
ECs2832
SMb20421
SMc01466
SMc03886
SMc03892
CLUSTER 2
ydcC
ECs2833

>COG5434 (Putative duplication confidence score 1.000)
CLUSTER 1
YJR153w
TM0437
CAC0355
CAC3684
SP1833
RSc1756
RSp0833
RSp0880
AGl3361
AGl619
CC0572
CLUSTER 2
AGl183

>COG5444 (Putative duplication confidence score 1.000)
CLUSTER 1
SA0281
lin0059
BS_yxiD
BH0978
BH2344
BH2523
BH3705
BH3991
BH3992
BH4017
CLUSTER 2
BS_yeeF
BS_yobL
BS_yokI
BS_yqcG
BS_ywqJ

>COG5445 (Putative duplication confidence score 1.000)
CLUSTER 1
yfaQ
Z3480
ECs3110
PA4488
RSc3029
CLUSTER 2
Z3479
ECs3109
RSc0320

>COG5450 (Putative duplication confidence score 1.000)
CLUSTER 1
Rv0657c
Rv1560
Rv2009
Rv2758c
MT0662.1
MT0686
MT1611
MT2064.1
MT2828
ML1911A
AGc1846
CC2983
CLUSTER 2
Rv2375
Rv2545
MT2444
MT2621

>COG5461 (Putative duplication confidence score 0.500)
CLUSTER 1
AGc378
SMc04110
mlr5598
CLUSTER 2
mlr8762
CC2944

>COG5463 (Putative duplication confidence score 1.000)
CLUSTER 1
ygiB
ZygiB
ECs3925
YPO0661
STM3187
AGc3818
CC2366
CLUSTER 2
yjfM
ZyjfM
ECs5161
STM4375

>COG5472 (Putative duplication confidence score 1.000)
CLUSTER 1
YPO0899
RSp0688
Cj1160c
CLUSTER 2
Cj1158c

>COG5476 (Putative duplication confidence score 1.000)
CLUSTER 1
RSp1573
AGc4702
AGl1835
SMb21155
SMb21161
BMEII0539
mll4144
mll6676
mlr5988
mlr6294
CLUSTER 2
mll6059
msl6060

>COG5479 (Putative duplication confidence score 0.750)
CLUSTER 1
MA1510_2
Cgl0771
Cgl1439
Cgl1790
Cgl1798
Cgl1842
Cgl2494
Cgl2815_2
Rv2721c
MT2794
ML1002
CLUSTER 2
DR1115
Cgl2827
Rv3811
MT3918

>COG5486 (Putative duplication confidence score 0.500)
CLUSTER 1
RSp0711
mll0509
mll6464
CLUSTER 2
SMc02859
mlr8147

>COG5489 (Putative duplication confidence score 0.500)
CLUSTER 1
RSc2613
AGpT209
AGpT217
mll9301
mlr9738
mlr9743
CC2683
CLUSTER 2
SMa0922
mlr6185

>COG5490 (Putative duplication confidence score 0.500)
CLUSTER 1
SMc00777
mlr6541
CLUSTER 2
mll1145
CC2160

>COG5492 (Putative duplication confidence score 1.000)
CLUSTER 1
CAC0551
CAC0552
CAC1389
CAC2107
CAC2367
CAC3085
CAC3086
CAC3272_1
CAC3273_1
CAC3274_1
CAC3275
CAC3278
CAC3279_1
CAC3280_1
CAP0002_1
CAP0003_1
CAP0160
lin2385
BS_yjdB
Z0972
Z1894
Z2137
Z2358
Z3087
ECs0834
ECs1111
ECs1640
ECs2169
ECs2729
ECs2952
YPMT1.14c
YPMT1.20c
YPO2110
YPO2116
STM0916
STM1038
STM2597
CLUSTER 2
CAC3565

>COG5502 (Putative duplication confidence score 1.000)
CLUSTER 1
aq_888
all1996
all3586
alr0892
SMc01448
mll6598
CLUSTER 2
SMc01008

>COG5504 (Putative duplication confidence score 0.500)
CLUSTER 1
DR0445
SA2177
BS_yjfC
CLUSTER 2
BS_yjaZ
BH2873

>COG5507 (Putative duplication confidence score 0.500)
CLUSTER 1
ybaA
ZybaA
ECs0509
mll7839
CLUSTER 2
SMc01560
mlr2642

>COG5519 (Putative duplication confidence score 0.500)
CLUSTER 1
MA1895
MA2235
MA4137
SA1828
CLUSTER 2
SA0059
SA0073
Z1843
ECs1583
ECs1584
YPO1259
STM2745
PM1782

>COG5525 (Putative duplication confidence score 1.000)
CLUSTER 1
lin0100
all7676
ybcX
Z1883
Z2131
Z2364
ECs1106
ECs1630
ECs2179
ECs2735
STM2608
XF0508
XF0711
XF2120
XF2500
RSc0853
CLUSTER 2
Z0964
Z2116
Z3099
ECs0825
ECs2963
STM0910
STM1031

>COG5539 (Putative duplication confidence score 1.000)
CLUSTER 1
YFL044c
SPAC24C9.14
ECU05g0570
CLUSTER 2
YHL013c
SPAC1952.03

>COG5542 (Putative duplication confidence score 0.500)
CLUSTER 1
YBR004c
SPAC18B11.05
ECU09g0560
all4350
CLUSTER 2
CAC0354
all4348
all4349

>COG5556 (Putative duplication confidence score 1.000)
CLUSTER 1
YPO2102
SMb20839
mlr8001
CLUSTER 2
SMa0731

>COG5564 (Putative duplication confidence score 1.000)
CLUSTER 1
YPO3838
SMa1332
mll9387
mlr3388
CLUSTER 2
mll9384_1
mlr9389

>COG5565 (Putative duplication confidence score 1.000)
CLUSTER 1
XF1238
CLUSTER 2
XF1239
SMc04187
mll1771
msl1767

>COG5576 (Putative duplication confidence score 1.000)
CLUSTER 1
YDL106c
YDR451c
YML027w
SPAC32A11.03c
SPBC21B10.13c
ECU02g1200
ECU03g0600
ECU03g0610
ECU03g1170
ECU04g0970
ECU04g1030
ECU06g0500
ECU09g0970
CLUSTER 2
ECU10g1470

>COG5588 (Putative duplication confidence score 0.500)
CLUSTER 1
RSp0712
mll0508
mll4476
mll6465
CLUSTER 2
SMa0407
SMc02860
mlr8146

>COG5592 (Putative duplication confidence score 0.500)
CLUSTER 1
Ta0035
TVN0039
SSO1911
SSO2049
CLUSTER 2
SSO1764
alr3199

>COG5596 (Putative duplication confidence score 0.667)
CLUSTER 1
YDL217c
SPBC25H2.04c
ECU07g0240
CLUSTER 2
YJL143w
YNR017w
SPAC3A12.16c
SPCC16A11.09c

>COG5598 (Putative duplication confidence score 0.667)
CLUSTER 1
MA0528
MA0932
SMc01661
mll5409
CLUSTER 2
SMa1478
SMb21178
SMc00886
SMc04330
mll1230
mll1516
mll1654
mlr1212
mlr8280

>COG5609 (Putative duplication confidence score 1.000)
CLUSTER 1
SA0170
BS_yrhF
BH2529
CLUSTER 2
SA0413
BS_ybcI
BH3870
alr3238

>COG5632 (Putative duplication confidence score 0.500)
CLUSTER 1
SA0905_2
lin2703
CLUSTER 2
lin0128
lin1700
lin2374
lin2563
BS_cwlA_1
BS_xlyA_1
BS_xlyB_1
BS_yomC
BS_yqeE_1

>COG5637 (Putative duplication confidence score 0.500)
CLUSTER 1
DR2377
DRA0006
alr0894
CLUSTER 2
slr0941
all2381

>COG5642 (Putative duplication confidence score 0.500)
CLUSTER 1
YPO2345
SMb20696
CLUSTER 2
SMa2281
mlr9078

>COG5643 (Putative duplication confidence score 1.000)
CLUSTER 1
MA0715
MTH1346
MTH55
MTH56
MTH674
MK1177
CLUSTER 2
MTH913

>COG5648 (Putative duplication confidence score 1.000)
CLUSTER 1
YBR089c-a
YDL002c
YDR174w
YKL032c
YMR072w
YPR052c
SPAC57A10.09c
ECU06g1270
CLUSTER 2
SPAC4G9.11c

>COG5649 (Putative duplication confidence score 1.000)
CLUSTER 1
RSp1476
SMb21004
mll2249
CLUSTER 2
SMb21005
mll2250

>COG5653 (Putative duplication confidence score 0.500)
CLUSTER 1
AGc2285
SMc01796
mll2080
mll2082
mll8447
CLUSTER 2
mlr0003
CC1244
CC2278
CC3689

>COG5655 (Putative duplication confidence score 0.500)
CLUSTER 1
CAC1872
SA0028
pli0015
CLUSTER 2
SA0027
SAP002
BH3964

>COG5657 (Putative duplication confidence score 1.000)
CLUSTER 1
YGL238w
SPBC30B4.05
ECU02g0630
CLUSTER 2
YPL125w
SPAC22H10.03c
SPCC1322.06

>COG5664 (Putative duplication confidence score 1.000)
CLUSTER 1
AGc3641
SMb21492
BMEII0082
mlr1823
CLUSTER 2
mlr7711