1 ARCHAEA 1169 seqs
1.1 EURYARCHAEOTA 874 seqs
1.1.1 METHANOCOCCALES 24 seqs
1.1.1.1 MC.JANNASCHII_GROUP 20 seqs
1.1.1.1.2104 OTU 1 seq
prokMSA_id:18 clone ABS12
1.1.1.1.2141 OTU 5 seqs
prokMSA_id:27 clone ST1-16
prokMSA_id:28 clone S15-2
prokMSA_id:29 clone S15-4
prokMSA_id:30 clone S15-6
prokMSA_id:31 clone S30-7
1.1.1.1.2147 OTU 3 seqs
prokMSA_id:69659 clone G26_C49 
prokMSA_id:69745 clone G26_C45 
prokMSA_id:73911 clone G26_C5 
1.1.1.1.2154 OTU 1 seq
prokMSA_id:52158 euryarchaeote MERTZ_21CM_297 
1.1.1.1.2196 OTU 1 seq
prokMSA_id:29288 archaebacteria clone ABS3
1.1.1.1.2202 OTU 1 seq
prokMSA_id:48249 Methanothermococcus okinawensis 
1.1.1.1.2216 OTU 1 seq
prokMSA_id:73906 SAGMA-F 
1.1.1.1.2231 OTU 1 seq
prokMSA_id:21 clone pMC2A5
1.1.1.1.2233 OTU 1 seq
prokMSA_id:26 Methanococcus thermolithotrophicus str. SN-1 DSM 2095
1.1.1.1.2236 OTU 1 seq
prokMSA_id:54381 clone RS0-24 
1.1.1.1.2271 OTU 1 seq
prokMSA_id:2 clone ABS9
1.1.1.1.2277 OTU 1 seq
prokMSA_id:26100 SAGMA-E 
1.1.1.1.2282 OTU 1 seq
prokMSA_id:4 clone pISA18
1.1.1.1.2283 OTU 1 seq
prokMSA_id:6 clone Rot20
1.1.1.2 MC.MARIPALUDIS_GROUP 4 seqs
1.1.1.2.2191 OTU 3 seqs
prokMSA_id:37 Methanococcus vannielii str. EY33
prokMSA_id:42 Methanococcus maripaludis str. D. NONE
prokMSA_id:43 Methanococcus maripaludis str. LL
1.1.1.2.2281 OTU 1 seq
prokMSA_id:36765 Methanococcus sp. P2F9701a 
1.1.2 METHANOBACTERIALES 129 seqs
1.1.2.1 MT.FERVIDUS_GROUP 10 seqs
1.1.2.1.2261 OTU 1 seq
prokMSA_id:46 Methanothermus fervidus
1.1.2.1.2266 OTU 1 seq
prokMSA_id:48 clone pBRKC82
1.1.2.1.2268 OTU 1 seq
prokMSA_id:49 unnamed organism
1.1.2.1.2276 OTU 1 seq
prokMSA_id:50 clone KTK 9A
1.1.2.1.2279 OTU 1 seq
prokMSA_id:52 clone KTK 28A
1.1.2.1.2280 OTU 1 seq
prokMSA_id:54 clone pMC2A24
1.1.2.1.2304 OTU 4 seqs
prokMSA_id:51 clone KTK 18A. AJ133623
prokMSA_id:18294 SA2 group euryarchaeote clone ST-12K24A
prokMSA_id:33564 SA2 group euryarchaeote clone ST-12K22A AJ347789
prokMSA_id:39923 Euryarchaeote J4.75-24 
1.1.2.2 METHANOBACTERIUM_GROUP 119 seqs
1.1.2.2.1 MB.FORMICICUM_SUBGROUP 78 seqs
1.1.2.2.1.2080 OTU 3 seqs
prokMSA_id:58 clone TA1f2
prokMSA_id:37573 BURTON2_A 
prokMSA_id:45897 BURTON20_A 
1.1.2.2.1.2082 OTU 1 seq
prokMSA_id:48957 SAGMA-K 
1.1.2.2.1.2088 OTU 1 seq
prokMSA_id:24205 methanogenic endosymbiont of Nyctotherus ovalis 
1.1.2.2.1.2098 OTU 1 seq
prokMSA_id:16893 SAGMA-J 
1.1.2.2.1.2110 OTU 3 seqs
prokMSA_id:118 Methanobrevibacter smithii. AF054208
prokMSA_id:125 Methanobrevibacter sp. str. HO DSM 11977
prokMSA_id:95844 Methanobrevibacter sp. ZA-10 AY196673
1.1.2.2.1.2116 OTU 1 seq
prokMSA_id:21835 Euryarchaeote J4.75-15 
1.1.2.2.1.2119 OTU 6 seqs
prokMSA_id:201 clone WCHA1-57
prokMSA_id:27098 39-2 AF424769
prokMSA_id:32110 69-1 
prokMSA_id:51118 46-1 AF424764
prokMSA_id:52425 44A-1 
prokMSA_id:62886 euryarchaeote clone:KuA13
1.1.2.2.1.2124 OTU 2 seqs
prokMSA_id:45914 euryarchaeote clone P3-Ar-10 
prokMSA_id:51931 euryarchaeote clone P3-Ar-23 
1.1.2.2.1.2128 OTU 1 seq
prokMSA_id:200 clone VAL68
1.1.2.2.1.2145 OTU 1 seq
prokMSA_id:75 Methanobacterium formicicum DSM 3636
1.1.2.2.1.2162 OTU 1 seq
prokMSA_id:57 Methanosphaera stadtmanae str. MCB-3 DSM 3091
1.1.2.2.1.2165 OTU 7 seqs
prokMSA_id:58991 19b-9 clone 19b-9
prokMSA_id:59050 19c-50 clone 19c-50
prokMSA_id:59052 19c-18 clone 19c-18
prokMSA_id:59057 19c-10 clone 19c-10
prokMSA_id:59071 19b-41 clone 19b-41
prokMSA_id:59085 19b-2 clone 19b-2
prokMSA_id:59086 19b-1 clone 19b-1
1.1.2.2.1.2185 OTU 1 seq
prokMSA_id:69892 TA1c9 
1.1.2.2.1.2206 OTU 5 seqs
prokMSA_id:17811 SA1 group euryarchaeote clone ST-12K11A
prokMSA_id:24075 SA1 group euryarchaeote clone ST-3K26A
prokMSA_id:32440 SA1 group euryarchaeote clone ST-12K28A
prokMSA_id:46891 SA1 group euryarchaeote clone ST-3K65A AJ347781
prokMSA_id:52466 SA1 group euryarchaeote clone ST-3K1A
1.1.2.2.1.2241 OTU 5 seqs
prokMSA_id:77 Methanobrevibacter smithii str. PS DSM 861
prokMSA_id:122 Methanobrevibacter smithii str. ALI
prokMSA_id:123 Methanobrevibacter smithii str. B181 DSM 11975
prokMSA_id:130 Methanobrevibacter sp. str. SM9
prokMSA_id:29783 rumen methanogen M6 
1.1.2.2.1.2247 OTU 2 seqs
prokMSA_id:29032 SM1K20 
prokMSA_id:52505 SM1 
1.1.2.2.1.2255 OTU 2 seqs
prokMSA_id:33106 SA1 group euryarchaeote clone ST-12K10A
prokMSA_id:41854 SA1 group euryarchaeote clone ST-3K54A
1.1.2.2.1.2272 OTU 28 seqs
prokMSA_id:79 Methanobacterium bryantii str. RiH2. AF028688
prokMSA_id:86 Methanobrevibacter sp. str. GS DSM 11979
prokMSA_id:114 Methanobrevibacter sp. str. NT7
prokMSA_id:115 Methanobrevibacter sp. str. MB-9
prokMSA_id:127 Methanobrevibacter sp. str. SH DSM 11976. U55240
prokMSA_id:128 Methanobrevibacter sp. str. RT
prokMSA_id:138 Methanobrevibacter cuticularis str. RFM-1 DSM 11139 . U41095
prokMSA_id:139 Methanobrevibacter filiformis str. RFM-3 DSM 11501
prokMSA_id:141 Methanobrevibacter HW3. AB026925
prokMSA_id:150 Methanobrevibacter curvatus str. RFM-2 DSM 11111
prokMSA_id:152 Methanobrevibacter RsW2. AB026915
prokMSA_id:153 Methanobrevibacter RsI17. AB026919
prokMSA_id:154 Methanobrevibacter LHD2. AB026920
prokMSA_id:158 Methanobrevibacter HW2. AB026924
prokMSA_id:175 Methanobrevibacter RsI12. AB026918
prokMSA_id:21086 rumen methanogen 15 
prokMSA_id:22694 Methanobrevibacter sp. ATM AF242652
prokMSA_id:24414 Methanobrevibacter arboriphilus 
prokMSA_id:38084 rumen methanogen 956 
prokMSA_id:39249 Methanobrevibacter sp. HW23 AB033293
prokMSA_id:39741 Methanobrevibacter sp. LRsD4 AB033290
prokMSA_id:43504 Methanobrevibacter sp. RsW3 AB033291
prokMSA_id:84255 euryarchaeote clone 15ar16 AY251026
prokMSA_id:92357 Methanobacterium sp. 8-2 AY350742
prokMSA_id:95916 Methanobrevibacter ruminantium AY196666
prokMSA_id:96099 Methanobacterium bryantii strain MOHG AY196658
prokMSA_id:97471 Methanobacterium bryantii strain MOH AY196657
prokMSA_id:97554 Methanobacterium formicicum AY196659
1.1.2.2.1.2284 OTU 1 seq
prokMSA_id:44789 Euryarchaeote J4.75-12 
1.1.2.2.1.2285 OTU 6 seqs
prokMSA_id:203 clone vadinDC06
prokMSA_id:18599 Methanobacterium curvum 
prokMSA_id:44183 Methanobacterium congolense 
prokMSA_id:77878 Methanobacteriaceae clone AEC 3 M71
prokMSA_id:77966 Methanobacteriaceae clone AEC 2 M46
prokMSA_id:78121 Methanobacteriaceae clone AMC 3 M14
1.1.2.2.2 MB.THERMOAUTOTROPHICUM_SUBGROUP 41 seqs
1.1.2.2.2.2073 OTU 3 seqs
prokMSA_id:237 unnamed organism
prokMSA_id:58504 clone:pHAuA-5 
prokMSA_id:78558 clone:OHKA2.33
1.1.2.2.2.2173 OTU 22 seqs
prokMSA_id:216 Methanothermobacter thermophilus str. M VKM B-1786
prokMSA_id:217 Methanobacterium wolfei. X89406
prokMSA_id:219 Methanobacterium thermoautotrophicum str. CSM3
prokMSA_id:221 Methanobacterium thermoautotrophicum str. FF3
prokMSA_id:222 Methanobacterium thermoautotrophicum str. CB12 OCM 36
prokMSA_id:223 Methanobacterium thermoautotrophicum str. Marburg
prokMSA_id:225 Methanothermobacter thermoflex str. IDZ VKM B-1963
prokMSA_id:226 Methanobacterium thermoautotrophicum str. FF1
prokMSA_id:227 Methanobacterium thermoautotrophicum str. ZH3 DSM 9446
prokMSA_id:229 Methanobacterium thermoautotrophicum str. CB12 ATCC 43574. N
prokMSA_id:233 Methanobacterium thermoautotrophicum str. KHT-2
prokMSA_id:234 Methanobacterium thermoautotrophicum str. THF
prokMSA_id:235 Methanobacterium thermoautotrophicum str. HN4
prokMSA_id:236 Methanothermobacter defluvii str. ADZ VKM B-1962
prokMSA_id:238 Methanobacterium thermoautotrophicum str. delta H
prokMSA_id:239 Methanobacterium thermoautotrophicum str. delta H
prokMSA_id:241 Methanobacterium thermoautotrophicum str. Z-245 DSM 3720
prokMSA_id:242 Methanobacterium thermoautotrophicum str. delta H
prokMSA_id:251 Methanobacterium thermoautotrophicum str. FTF
prokMSA_id:67146 clone:LCB
prokMSA_id:67147 clone:LCA
prokMSA_id:81334 Methanothermobacter wolfeii 
1.1.2.2.2.2183 OTU 6 seqs
prokMSA_id:18834 TA1b12 AF134385
prokMSA_id:48616 BA2e8 AF134383
prokMSA_id:53542 AT425_ArB7 
prokMSA_id:93665 clone GZfosARC_25D1 AY324375
prokMSA_id:93719 clone GZfosARC_1C11 AY324374
prokMSA_id:93742 clone BR34ARC_C03 AY324378
1.1.2.2.2.2235 OTU 1 seq
prokMSA_id:249 clone pMC1A4
1.1.2.2.2.2257 OTU 5 seqs
prokMSA_id:243 clone TA1a9
prokMSA_id:20341 TA1a6 
prokMSA_id:35808 BA1a2 
prokMSA_id:36790 BA1b1 
prokMSA_id:94129 clone F17.1ARC_A01 AY324382
1.1.2.2.2.2292 OTU 4 seqs
prokMSA_id:245 unnamed organism. AF119124
prokMSA_id:248 unnamed organism. AF119140
prokMSA_id:56753 clone FZ2aA62 
prokMSA_id:56767 clone FZ1aA168 
1.1.3 METHANOMICROBACTERIA_AND_RELATIVES 641 seqs
1.1.3.1 METHANOMICROBIALES 182 seqs
1.1.3.1.1 MCU.BOURGENSE_SUBGROUP 133 seqs
1.1.3.1.1.2078 OTU 1 seq
prokMSA_id:30524 marine pN1-2 
1.1.3.1.1.2084 OTU 1 seq
prokMSA_id:300 clone SYA-133
1.1.3.1.1.2089 OTU 1 seq
prokMSA_id:303 clone SYA-45
1.1.3.1.1.2094 OTU 1 seq
prokMSA_id:314 Methanoculleus MAB3 str. MAB3
1.1.3.1.1.2093 OTU 1 seq
prokMSA_id:312 Methanoculleus MAB1 str. MAB1
1.1.3.1.1.2102 OTU 5 seqs
prokMSA_id:306 str. DCM875
prokMSA_id:28555 euryarchaeote AT-200_29 
prokMSA_id:45211 euryarchaeote ME-450_38 
prokMSA_id:50813 marine AEGEAN_60 
prokMSA_id:84991 clone:pCIRA-15
1.1.3.1.1.2105 OTU 1 seq
prokMSA_id:34486 euryarchaeote VAL147 clone VAL147
1.1.3.1.1.2121 OTU 1 seq
prokMSA_id:18762 clone TDC-AR4 
1.1.3.1.1.2131 OTU 2 seqs
prokMSA_id:253 clone 2C25
prokMSA_id:255 clone 2MT8
1.1.3.1.1.2161 OTU 16 seqs
prokMSA_id:263 clone 2MT120
prokMSA_id:264 Methanogenium ACE1_A
prokMSA_id:265 Methanogenium organophilum 
prokMSA_id:266 Methanogenium frigidum OCM 469. AF009219
prokMSA_id:24448 2C169 
prokMSA_id:26952 2C130 
prokMSA_id:31414 O23E2 
prokMSA_id:49083 O23C7 
prokMSA_id:72379 O23D1 AF220336
prokMSA_id:72381 euryarchaeote EHB156 AF374279
prokMSA_id:72572 euryarchaeote EHB158 AF374277
prokMSA_id:74196 euryarchaeote EHB154 AF374278
prokMSA_id:78486 Methanogenium sp. clone SB13 
prokMSA_id:78517 Methanogenium sp. clone LH14 
prokMSA_id:78642 Methanogenium sp. clone LH23 
prokMSA_id:78953 Methanogenium sp. clone SB18 
1.1.3.1.1.2171 OTU 1 seq
prokMSA_id:26253 AT425_ArD10 
1.1.3.1.1.2188 OTU 1 seq
prokMSA_id:260 Methanoplanus petrolearius SEBR 4847
1.1.3.1.1.2228 OTU 8 seqs
prokMSA_id:298 unnamed organism
prokMSA_id:299 Methanocalculus halotolerans SEBR 4845
prokMSA_id:19259 Methanocalculus sp. K1F9705b 
prokMSA_id:41198 Methanocalculus sp. K1F9705c 
prokMSA_id:42125 Methanocalculus taiwanense strain P2F9704a 
prokMSA_id:45899 Methanocalculus halotolerans strain P2F9705 
prokMSA_id:74785 Methanocalculus sp. O1F9702c 
prokMSA_id:83974 Methanocalculus chunshungensis 
1.1.3.1.1.2234 OTU 2 seqs
prokMSA_id:257 Methanomicrobium mobile str. BP DSM 1539
prokMSA_id:50770 rumen methanogen Hole9 
1.1.3.1.1.2243 OTU 1 seq
prokMSA_id:37655 2C174 
1.1.3.1.1.2244 OTU 2 seqs
prokMSA_id:258 clone BURTON24_A
prokMSA_id:261 clone ACE4_A
1.1.3.1.1.2245 OTU 1 seq
prokMSA_id:252 Methanoplanus limicola str. M3 DSM 2279
1.1.3.1.1.2248 OTU 1 seq
prokMSA_id:254 clone 2C84
1.1.3.1.1.2250 OTU 1 seq
prokMSA_id:256 Methanoplanus endosymbiosus str. MC1 GDVogels DSM 3599
1.1.3.1.1.2274 OTU 52 seqs
prokMSA_id:267 Methanoculleus palmolei str. INSLUZ DSM 4273
prokMSA_id:294 Methanoculleus marisnigri str. JR1 ATCC 35101
prokMSA_id:295 Methanoculleus marisnigri str. CoCam
prokMSA_id:296 unnamed organism. AF157519
prokMSA_id:304 Methanoculleus thermophilicus str. TCI DSM 3915
prokMSA_id:308 Methanoculleus olentangyi str. RC/ER OCM 52 . AF095270
prokMSA_id:309 clone 2C87
prokMSA_id:310 clone 2MT196. AF015985
prokMSA_id:311 unnamed organism. AF157518
prokMSA_id:316 Methanoculleus bourgense str. MS2 ATCC 43281 . NONE
prokMSA_id:317 Methanoculleus bourgensis str. MS2. AF095269
prokMSA_id:318 Methanoculleus olentangyi str. RC/ER ATCC 35293 . NONE
prokMSA_id:16936 clone GW60-13-38 AY062220
prokMSA_id:26465 anaerobic methanogenic E15-1 
prokMSA_id:26720 Methanoculleus chikugoensis strain:MG62
prokMSA_id:28508 isolate MUAHR 10 AF376797
prokMSA_id:29601 anaerobic methanogenic E30-5 AJ244301
prokMSA_id:30915 clone GW70-20-6 AY062235
prokMSA_id:33933 anaerobic methanogenic E15-3 
prokMSA_id:44000 clone GW60-13-4 AY062222
prokMSA_id:44094 clone GW60-13-1 AY062218
prokMSA_id:44296 anaerobic methanogenic E15-10 
prokMSA_id:44379 clone GW70-10-35 AY062230
prokMSA_id:45011 clone GW60-13-3 AY062221
prokMSA_id:48761 clone GW70-10-10 AY062225
prokMSA_id:55959 clone DERR12
prokMSA_id:58532 clone LK28 AJ493110
prokMSA_id:58533 clone LK49 AJ493107
prokMSA_id:58534 clone LK31 AJ493109
prokMSA_id:58537 clone LK26 AJ493103
prokMSA_id:58538 clone LK50 AJ493104
prokMSA_id:63713 clone DERS7
prokMSA_id:63714 clone DERS6 AJ412784
prokMSA_id:63723 clone DERS4
prokMSA_id:63724 clone DERS5 AJ412783
prokMSA_id:63729 clone DERR10
prokMSA_id:67141 clone:LCD
prokMSA_id:69299 clone LK16 AJ493099
prokMSA_id:69300 Methanoculleus oldenburgensis 
prokMSA_id:69442 clone LK23 AJ493108
prokMSA_id:69616 clone LK9 AJ493097
prokMSA_id:69714 clone LK13 AJ493095
prokMSA_id:70145 Methanoculleus submarinus 
prokMSA_id:70246 clone LK14 AJ493102
prokMSA_id:71365 clone LK4 AJ493098
prokMSA_id:73005 clone LK45 AJ493096
prokMSA_id:73658 clone LK15 AJ493093
prokMSA_id:82879 euryarchaeote clone:AA01
prokMSA_id:84703 clone AR2_8 
prokMSA_id:91502 Methanoculleus thermophilicus AB065297
prokMSA_id:93802 clone CM20 AY368461
prokMSA_id:98731 Methanoculleus bourgensis AY196674
1.1.3.1.1.2286 OTU 33 seqs
prokMSA_id:269 clone WCHD3-07
prokMSA_id:16528 AM-10 AB056013
prokMSA_id:27240 OS-23 AB056048
prokMSA_id:28545 19-1 
prokMSA_id:29292 euryarchaeote r-5_06C AF473903
prokMSA_id:30469 OS-16 AB056041
prokMSA_id:32200 OS-8 AB056033
prokMSA_id:37119 57-1 
prokMSA_id:39739 OS-13 AB056038
prokMSA_id:50440 Toluene-degrading methanogenic consortium M1 
prokMSA_id:55255 Methanoculleus palmolei clone 2a AF509447
prokMSA_id:56516 Methanoculleus palmolei clone 12a AF509439
prokMSA_id:62887 Methanomicrobiales clone:KuA12
prokMSA_id:66206 Methanocorpusculum bavaricum clone 50i AF509456
prokMSA_id:66210 Methanocorpusculum bavaricum clone 51i AF509457
prokMSA_id:66213 Methanoculleus palmolei clone 44i AF509453
prokMSA_id:66215 Methanoculleus palmolei clone 45i AF509454
prokMSA_id:66220 Methanoculleus palmolei clone 1a AF509444
prokMSA_id:66225 Methanospirillum hungatei clone 10e AF509437
prokMSA_id:66889 clone SHC-88 AJ312019
prokMSA_id:77921 Methanomicrobiales clone AMC 1 M21 AJ459899
prokMSA_id:81190 methanogenic clone FenH- AJ548953
prokMSA_id:81349 methanogenic clone FenW- AJ548949
prokMSA_id:81531 methanogenic clone FenR- AJ548950
prokMSA_id:81538 methanogenic clone FenK- AJ548952
prokMSA_id:81750 methanogenic clone FenI- AJ548947
prokMSA_id:81899 methanogenic clone FenZ- AJ548946
prokMSA_id:82322 methanogenic clone FenH1- AJ548948
prokMSA_id:84116 clone AF6 AY092163
prokMSA_id:85604 euryarchaeote clone 15ar18 
prokMSA_id:85882 clone AF7 AY092165
prokMSA_id:90496 clone Stme2 AY294415
prokMSA_id:90666 clone Stme4 AY294409
1.1.3.1.2 MF.TATIONIS_SUBGROUP 4 seqs
1.1.3.1.2.2225 OTU 4 seqs
prokMSA_id:328 Methanofollis liminatans str. GKZPZ DSM 4140
prokMSA_id:329 Methanofollis liminatans DSM 10196
prokMSA_id:22804 Methanofollis sp. N2F9704 
prokMSA_id:96483 Methanofollis liminatans AY196677
1.1.3.1.3 MSP.HUNGATEI_SUBGROUP 10 seqs
1.1.3.1.3.2103 OTU 1 seq
prokMSA_id:338 unnamed organism
1.1.3.1.3.2146 OTU 1 seq
prokMSA_id:345 clone SYA-50
1.1.3.1.3.2168 OTU 3 seqs
prokMSA_id:340 clone MNt1
prokMSA_id:341 clone MNt2
prokMSA_id:342 clone MPn1
1.1.3.1.3.2172 OTU 4 seqs
prokMSA_id:336 Methanospirillum hungatei str. JF1 DSM 864
prokMSA_id:343 Methanospirillum sp
prokMSA_id:43804 clone AC43 AJ288312
prokMSA_id:97855 Methanospirillum hungatei AY196683
1.1.3.1.3.2232 OTU 1 seq
prokMSA_id:344 clone SYA-77
1.1.3.1.4 MCR.PARVUM_SUBGROUP 35 seqs
1.1.3.1.4.2077 OTU 18 seqs
prokMSA_id:347 symbiont of Trimyema compressa. M96976
prokMSA_id:348 symbiont of archaeobacterial symbiont of Trimyema sp. Z16412
prokMSA_id:349 symbiont of archaeobacterial symbiont of Metopus contortus
prokMSA_id:25498 isolate MUAHR 6 AF376793
prokMSA_id:34398 isolate MUAHR 4 AF376791
prokMSA_id:82638 clone CARB_AR1_1 AY239517
prokMSA_id:84012 clone AR2_6 AY231361
prokMSA_id:84058 clone CARB_AR1_4 AY239520
prokMSA_id:84212 clone AR1R2_3 
prokMSA_id:84307 clone AR1R2_1 AY231351
prokMSA_id:85040 clone AR2_10 AY231364
prokMSA_id:85920 clone CARB_AR1_6 AY239522
prokMSA_id:86048 clone AR1R2_4 
prokMSA_id:86278 clone AR1_5 AY231355
prokMSA_id:92492 ZAR20 AY341317
prokMSA_id:92733 ZAR11 AY341307
prokMSA_id:92887 ZAR7 AY341315
prokMSA_id:93046 ZAR8 AY341316
1.1.3.1.4.2278 OTU 17 seqs
prokMSA_id:350 Methanocorpusculum labreanum str. Z ATCC 43576 . NONE
prokMSA_id:352 Methanocorpusculum sinense str. China Z DSM 4274 . AF095268
prokMSA_id:353 Methanocorpusculum labreanum str. Z DSM 4855 . AF095267
prokMSA_id:356 Methanocorpusculum parvum str. XII ATCC 43721 . M59147
prokMSA_id:31702 equine intestinal archaeal sp. DL11 clone DL11
prokMSA_id:39103 equine intestinal clone:YT28
prokMSA_id:39974 Methanocorpusculum parvum strain IF9601b 
prokMSA_id:66890 clone SHC-268
prokMSA_id:71599 C1_R002 
prokMSA_id:75506 methanogenic symbiont PA127 AB062302
prokMSA_id:75579 methanogenic symbiont PA123 AB062305
prokMSA_id:76282 methanogenic symbiont ST152 AB062304
prokMSA_id:76790 methanogenic symbiont ST131 AB062301
prokMSA_id:83370 Methanocorpusculum sp. MSP 
prokMSA_id:85117 Methanocorpusculum labreanum 
prokMSA_id:86427 Methanocorpusculum parvum 
prokMSA_id:97068 Methanocorpusculum bavaricum AY196676
1.1.3.2 METHANOSARCINALES 152 seqs
1.1.3.2.1 METHANOSARCINA_AND_RELATIVES 122 seqs
1.1.3.2.1.2067 OTU 1 seq
prokMSA_id:35246 Euryarchaeote DJ3.25-13 
1.1.3.2.1.2072 OTU 1 seq
prokMSA_id:470 clone S30-29
1.1.3.2.1.2095 OTU 1 seq
prokMSA_id:422 symbiont of Plagiopyla frontata
1.1.3.2.1.2099 OTU 1 seq
prokMSA_id:20092 RSS50-7 clone RSS50-7
1.1.3.2.1.2101 OTU 1 seq
prokMSA_id:475 str. GS1-A
1.1.3.2.1.2113 OTU 1 seq
prokMSA_id:73685 C1_R046 
1.1.3.2.1.2125 OTU 2 seqs
prokMSA_id:20184 Green Bay ferromanganous micronodule ARB5 
prokMSA_id:74581 Green Bay ferromanganous micronodule ARC3 
1.1.3.2.1.2127 OTU 7 seqs
prokMSA_id:472 Methanosarcina siciliae str. C2J
prokMSA_id:490 Methanosarcina barkeri str. MS DSM 800
prokMSA_id:491 Methanosarcina barkeri str. Sar
prokMSA_id:498 clone vadinCA25
prokMSA_id:514 Methanosarcina barkeri str. CM1
prokMSA_id:67692 Methanosarcina acetivorans str. C2A section 99 of 534 of the
prokMSA_id:67693 Methanosarcina acetivorans str. C2A section 529 of 534 of th
1.1.3.2.1.2133 OTU 1 seq
prokMSA_id:427 clone BURTON-12
1.1.3.2.1.2134 OTU 1 seq
prokMSA_id:428 clone pMC2A203
1.1.3.2.1.2139 OTU 1 seq
prokMSA_id:429 clone pMC2A33
1.1.3.2.1.2143 OTU 6 seqs
prokMSA_id:380 clone vadinDA05
prokMSA_id:476 Methanosarcina FR str. FR
prokMSA_id:67139 clone:LCE
prokMSA_id:83898 Methanosarcina sp. MS 
prokMSA_id:85506 Methanosarcina sp. MM 
prokMSA_id:88792 Methanosarcina sp. JL01 AF519802
1.1.3.2.1.2158 OTU 1 seq
prokMSA_id:442 clone pBRKC129
1.1.3.2.1.2159 OTU 1 seq
prokMSA_id:443 clone S15-27
1.1.3.2.1.2160 OTU 1 seq
prokMSA_id:45908 Euryarchaeote D4.75-4 
1.1.3.2.1.2201 OTU 30 seqs
prokMSA_id:444 clone TA1a4. AF134384
prokMSA_id:20168 At425_ArD2 AY053472
prokMSA_id:21515 AT425_ArE12 
prokMSA_id:35354 C1_R048 
prokMSA_id:41219 isolate SB-17a1D3 
prokMSA_id:59039 19b-31 clone 19b-31 AJ294899
prokMSA_id:59046 19c-45 clone 19c-45 AJ294893
prokMSA_id:59047 19c-49 clone 19c-49
prokMSA_id:59048 19c-36 clone 19c-36 AJ294892
prokMSA_id:59068 19b-46 clone 19b-46
prokMSA_id:59070 19b-38 clone 19b-38 AJ294868
prokMSA_id:59077 19b-24 clone 19b-24
prokMSA_id:59079 19b-23 clone 19b-23 AJ294860
prokMSA_id:59083 19b-7 clone 19b-7 AJ294855
prokMSA_id:69806 CS_R012 
prokMSA_id:70991 isolate Eel-36a2A1 
prokMSA_id:71136 isolate SB-24a1A12 
prokMSA_id:72394 isolate SB-17a1B11 
prokMSA_id:72945 isolate Eel-36a2E1 
prokMSA_id:73069 C1_R004 
prokMSA_id:74281 isolate Eel-36a2A5 
prokMSA_id:74364 C1_R019 
prokMSA_id:92926 clone 626-27 AY345181
prokMSA_id:93178 Methanosarcinales clone AMOS4A_4113_B05 AY323218
prokMSA_id:94105 Methanosarcinales clone AMOS4A_4113_H05 AY323223
prokMSA_id:95246 Methanosarcinales clone GoM GC234 021R AY211695
prokMSA_id:95425 Methanosarcinales clone GoM GC234 520R AY211701
prokMSA_id:97124 Methanosarcinales clone GoM GC234 607R AY211704
prokMSA_id:98308 Methanosarcinales clone GoM GC234 019R AY211694
prokMSA_id:98490 Methanosarcinales clone GoM GC185 503R AY211685
1.1.3.2.1.2215 OTU 2 seqs
prokMSA_id:68322 clone G72_C12 
prokMSA_id:68326 clone G72_C1 
1.1.3.2.1.2223 OTU 7 seqs
prokMSA_id:373 Methanosarcina mazei str. C16 DSM 2053
prokMSA_id:374 Methanosarcina mazei str. SarPi
prokMSA_id:439 Methanosarcina mazei str. Go1
prokMSA_id:18470 Methanosarcina mazei strain O1M9704b 
prokMSA_id:18827 Methanosarcina mazei strain O1M9701 
prokMSA_id:30939 Methanosarcina mazei 
prokMSA_id:84434 Methanosarcina sp. MT 
1.1.3.2.1.2246 OTU 4 seqs
prokMSA_id:36504 isolate Eel-36a2B9 
prokMSA_id:69820 isolate Eel-36a2A4 
prokMSA_id:72991 isolate SB-24a1H2 
prokMSA_id:73643 isolate SB-24a1C12 
1.1.3.2.1.2252 OTU 1 seq
prokMSA_id:403 Methanosarcina semesii str. MD1
1.1.3.2.1.2269 OTU 26 seqs
prokMSA_id:473 clone MOf1. AB009822
prokMSA_id:474 clone MPn4
prokMSA_id:516 Methanomicrococcus blatticolus str. PA
prokMSA_id:16838 euryarchaeote clone P1-Ar-10 AF293508
prokMSA_id:18310 euryarchaeote clone P1-Ar-15 AF293513
prokMSA_id:18593 euryarchaeote clone P1-Ar-26 AF293533
prokMSA_id:18969 euryarchaeote clone P1-Ar-6 
prokMSA_id:20977 euryarchaeote clone P3-Ar-24 
prokMSA_id:21448 euryarchaeote clone P1-Ar-4 
prokMSA_id:21910 euryarchaeote clone P1-Ar-17 AF293526
prokMSA_id:23609 euryarchaeote clone P1-Ar-1 
prokMSA_id:32888 euryarchaeote clone P1-Ar-3 
prokMSA_id:33973 euryarchaeote clone P1-Ar-28 AF293535
prokMSA_id:35091 euryarchaeote clone P1-Ar-19 AF293527
prokMSA_id:35561 euryarchaeote clone P1-Ar-14 AF293512
prokMSA_id:36045 euryarchaeote clone P1-Ar-16 
prokMSA_id:39139 euryarchaeote clone P1-Ar-7 
prokMSA_id:40656 euryarchaeote clone P1-Ar-25 AF293532
prokMSA_id:44162 euryarchaeote clone P1-Ar-2 AF293514
prokMSA_id:45534 euryarchaeote clone P1-Ar-13 AF293511
prokMSA_id:46877 euryarchaeote clone P1-Ar-5 
prokMSA_id:48239 euryarchaeote clone P1-Ar-27 AF293534
prokMSA_id:50358 euryarchaeote clone P1-Ar-8 AF293520
prokMSA_id:50674 euryarchaeote clone P4b-Ar-18 
prokMSA_id:51355 euryarchaeote clone P1-Ar-30 AF293537
prokMSA_id:95892 Methanimicrococcus blatticola AY196680
1.1.3.2.1.2275 OTU 1 seq
prokMSA_id:42447 2MT1 
1.1.3.2.1.2287 OTU 7 seqs
prokMSA_id:437 clone 2MT7. AF015991
prokMSA_id:438 clone BA2H11fin. AF134393
prokMSA_id:69934 isolate SB-24a1B11 
prokMSA_id:73952 isolate SB-24a1F10 
prokMSA_id:92823 clone 626-29 AY345183
prokMSA_id:93364 clone BR34ARC_C05 AY324379
prokMSA_id:95517 Methanosarcinales clone GoM GC185 517R AY211687
1.1.3.2.1.2291 OTU 10 seqs
prokMSA_id:426 Methanococcoides burtonii DSM 6242
prokMSA_id:431 Methanomethylovorans hollandica str. DMS1. AF120163
prokMSA_id:40857 isolate SB-24a1C2 
prokMSA_id:44725 Methanococcoides sp. strain NaT1
prokMSA_id:48567 Methanomethylovorans victoriae strain TM
prokMSA_id:62890 Methanomethylovorans sp. clone:KuA6
prokMSA_id:66897 clone SHB-143
prokMSA_id:70903 isolate Eel-36a2H11 
prokMSA_id:83403 clone:pCIRA-K AB095121
prokMSA_id:83794 Methanomethylovorans sp. ZB 
1.1.3.2.1.2299 OTU 7 seqs
prokMSA_id:456 clone ARC46
prokMSA_id:493 clone ARC9
prokMSA_id:494 clone ARC31
prokMSA_id:495 clone ARC45
prokMSA_id:496 clone ARC63
prokMSA_id:497 clone ARC64
prokMSA_id:36837 rumen methanogen 2 
1.1.3.2.2 METHANOSAETA 30 seqs
1.1.3.2.2.2068 OTU 1 seq
prokMSA_id:23885 anaerobic methanogenic E15-7 
1.1.3.2.2.2074 OTU 1 seq
prokMSA_id:78578 clone MB-12 
1.1.3.2.2.2079 OTU 1 seq
prokMSA_id:72917 O23F7 
1.1.3.2.2.2085 OTU 1 seq
prokMSA_id:20919 clone AS17-04 
1.1.3.2.2.2107 OTU 5 seqs
prokMSA_id:537 clone ARR2
prokMSA_id:546 clone EtOH6
prokMSA_id:573 clone ARR18
prokMSA_id:37876 archeobacteria Clone EtOH2
prokMSA_id:41805 clone AS00-12 
1.1.3.2.2.2129 OTU 5 seqs
prokMSA_id:538 clone SJC-11b
prokMSA_id:19676 TA01 
prokMSA_id:49668 TA04 
prokMSA_id:62894 Methanosaeta sp. clone:KuA1
prokMSA_id:66894 clone SHB-23
1.1.3.2.2.2130 OTU 5 seqs
prokMSA_id:532 Methanosaeta WCHD3-03
prokMSA_id:539 clone SJC-125a
prokMSA_id:25452 120A-4 
prokMSA_id:32447 61-2 
prokMSA_id:86454 euryarchaeote clone 15ar14 
1.1.3.2.2.2140 OTU 1 seq
prokMSA_id:27475 Methanosaeta sp. Clone A1
1.1.3.2.2.2153 OTU 2 seqs
prokMSA_id:22948 Toluene-degrading methanogenic consortium M2 
prokMSA_id:67140 clone:LCC
1.1.3.2.2.2155 OTU 1 seq
prokMSA_id:549 clone Rot10
1.1.3.2.2.2156 OTU 1 seq
prokMSA_id:44079 clone RS0-17 
1.1.3.2.2.2157 OTU 1 seq
prokMSA_id:560 clone S15-20
1.1.3.2.2.2177 OTU 2 seqs
prokMSA_id:533 clone WCHD3-34
prokMSA_id:41595 euryarchaeote clone AS04-16
1.1.3.2.2.2273 OTU 1 seq
prokMSA_id:554 clone VAL33-1
1.1.3.2.2.2294 OTU 1 seq
prokMSA_id:526 unnamed organism
1.1.3.2.2.2296 OTU 1 seq
prokMSA_id:62889 Methanosarcinales clone:KuA7
1.1.3.4 HALOPHILIC_ARCHAEA 199 seqs
1.1.3.4.1 HBM.GOMORRENSE_SUBGROUP 5 seqs
1.1.3.4.1.2290 OTU 3 seqs
prokMSA_id:596 clone DEEP-8
prokMSA_id:597 clone DEEP-7
prokMSA_id:598 clone DEEP-6
1.1.3.4.1.2295 OTU 1 seq
prokMSA_id:595 clone pBRKC22
1.1.3.4.1.2297 OTU 1 seq
prokMSA_id:599 clone DEEP-5
1.1.3.4.2 HF.VOLCANII_SUBGROUP 30 seqs
1.1.3.4.2.2112 OTU 3 seqs
prokMSA_id:24020 clone HW10
prokMSA_id:46041 clone HW3
prokMSA_id:50299 clone HW5
1.1.3.4.2.2120 OTU 2 seqs
prokMSA_id:39318 Unknown PCR fragment of an archaeal microorganism
prokMSA_id:43013 Unknown organism 
1.1.3.4.2.2167 OTU 13 seqs
prokMSA_id:600 Haloferax mediterranei ATCC 33500
prokMSA_id:603 Haloferax denitrificans ATCC 35960
prokMSA_id:604 Haloferax volcanii str. DS-2 ATCC 29605
prokMSA_id:606 clone 2C82
prokMSA_id:608 Haloferax D1227 str. D1227
prokMSA_id:610 Haloferax gibbonsii ATCC 33959
prokMSA_id:25672 Haloferax volcanii 
prokMSA_id:29381 2MT310 
prokMSA_id:41199 2MT103 AF015982
prokMSA_id:47309 Haloferax alexandrinus complete 
prokMSA_id:71072 Haloferax denitrificans complete 
prokMSA_id:74464 Haloferax gibbonsii complete 
prokMSA_id:89487 Haloarchaeon 8AHG AY292395
1.1.3.4.2.2174 OTU 2 seqs
prokMSA_id:35866 ORGANIC5_A 
prokMSA_id:37132 ORGANIC1_A 
1.1.3.4.2.2203 OTU 2 seqs
prokMSA_id:611 Haloferax sp. str. Aa 2.2
prokMSA_id:45692 Haloferax alicantei 
1.1.3.4.2.2218 OTU 2 seqs
prokMSA_id:609 Halogeometricum borinquense str. PR 3 ATCC 700274
prokMSA_id:42829 Halophilic PalaeII strain PalaeII
1.1.3.4.2.2260 OTU 1 seq
prokMSA_id:602 clone DEEP-9
1.1.3.4.2.2262 OTU 1 seq
prokMSA_id:605 clone 1MT315
1.1.3.4.2.2307 OTU 4 seqs
prokMSA_id:39274 JDS-1 
prokMSA_id:62506 euryarchaeote clone LA1-A10 
prokMSA_id:64078 prokaryote isolate DGGE Band 506-ICM 15% pond AF477953
prokMSA_id:71057 prokaryote isolate DGGE Band 508-ICM 15% pond AF477954
1.1.3.4.3 HR.SACCHAROVORUM_SUBGROUP 27 seqs
1.1.3.4.3.2100 OTU 1 seq
prokMSA_id:615 Halorubrum distributum str. I-M JCM 9100
1.1.3.4.3.2106 OTU 3 seqs
prokMSA_id:23696 clone HW107
prokMSA_id:53794 A151 
prokMSA_id:72249 A154 
1.1.3.4.3.2148 OTU 10 seqs
prokMSA_id:618 Halorubrum sodomense str. RD-26 ATCC 33755 . X82169
prokMSA_id:624 Halorubrum saccharovorum NCIMB 2081 . X82167
prokMSA_id:625 Halorubrum saccharovorum JCM 8865
prokMSA_id:626 Halorubrum vacuolatum str. M24 JCM 9060
prokMSA_id:627 Halorubrum lacusprofundi ACAM 34
prokMSA_id:632 Halorubrum lacusprofundi JCM 8891
prokMSA_id:23129 Haloarchaeon str. 54R strain 54R AJ270251
prokMSA_id:35867 Haloarchaeon str. MAlk006.3 strain MAlk006.3
prokMSA_id:45762 Halorubrum tibetense AF435111
prokMSA_id:57545 Halorubrum tibetense strain 8W8 AY149598
1.1.3.4.3.2254 OTU 8 seqs
prokMSA_id:612 Halobacterium sp. str. Ch2 ACM 3911
prokMSA_id:613 Halobacterium AUS-1
prokMSA_id:616 Halorubrum trapanicum NRC 34021
prokMSA_id:617 Halobacterium AUS-2
prokMSA_id:622 Halorubrum sodomense str. RD-26 ATCC 33755
prokMSA_id:42756 Halobacterium=halophilic Ch2 Genomic 1469 nt
prokMSA_id:43177 Halophilic NaxosII strain NaxosII
prokMSA_id:71191 Halobacterium sodomense complete 
1.1.3.4.3.2289 OTU 1 seq
prokMSA_id:619 clone pBRKC112
1.1.3.4.3.2300 OTU 1 seq
prokMSA_id:620 clone pBRKC101
1.1.3.4.3.2301 OTU 1 seq
prokMSA_id:623 Halorubrum saccharovorum NCIMB 2081
1.1.3.4.3.2305 OTU 1 seq
prokMSA_id:628 clone pBRKC128
1.1.3.4.3.2306 OTU 1 seq
prokMSA_id:629 clone pBRKC125
1.1.3.4.4 HB.HALOBIUM_SUBGROUP 29 seqs
1.1.3.4.4.2175 OTU 25 seqs
prokMSA_id:633 Halobacterium halobium str. R1
prokMSA_id:634 Halobacterium halobium str. R1
prokMSA_id:635 Halobacterium 9R str. 9R
prokMSA_id:636 Halobacterium salinarum str. E12
prokMSA_id:637 Halobacterium halobium
prokMSA_id:640 Halobacterium sp. str. Y12
prokMSA_id:641 Halobacterium cutirubrum str. clone lambda-Hc4
prokMSA_id:23901 Halobacterium sp. NCIMB 741 
prokMSA_id:32933 Halobacterium sp. NRC-1 section 159 of 170 of the complete g
prokMSA_id:38000 Haloarchaeon str. BbpA.1 strain BbpA.1
prokMSA_id:40871 Halobacterium sp. NCIMB 733 AB074301
prokMSA_id:44211 Haloarchaeon str. B1bra.5 strain B1bra.5
prokMSA_id:47635 Halobacterium sp. JP-6 
prokMSA_id:48009 Halobacterium sp. NRC-1 complete genome AE004437
prokMSA_id:50435 Halobacterium salinarum 
prokMSA_id:54099 Halobacterium sp. NRC-1 complete genome NC_002607
prokMSA_id:56380 H.cutirubrum cluster and Ala-tRNA complete; 23S 5' end
prokMSA_id:63193 Halobacterium salinarum strain DSM 3754T
prokMSA_id:68649 Halobacterium sp. JCM 9447 AB081731
prokMSA_id:70968 Halobacterium sp. complete 
prokMSA_id:81508 Halobacterium sp. A1 
prokMSA_id:82712 Halobacterium sp. HM13 AY232300
prokMSA_id:83852 Halobacterium sp. HM01 AY232297
prokMSA_id:83927 Halobacterium sp. HM02 AY232298
prokMSA_id:86046 Halobacterium sp. HM11 AY232299
1.1.3.4.4.2211 OTU 1 seq
prokMSA_id:37525 D3.5-B 
1.1.3.4.4.2217 OTU 1 seq
prokMSA_id:41147 Halobacteriales MT15 
1.1.3.4.4.2222 OTU 1 seq
prokMSA_id:49296 euryarchaeote clone ST-3K67A
1.1.3.4.4.2267 OTU 1 seq
prokMSA_id:26302 Halobacteriales MT14 
1.1.3.4.5 NTM.PHARAONIS 10 seqs
1.1.3.4.5.2210 OTU 10 seqs
prokMSA_id:643 Natronomonas pharaonis str. Gabara JCM 8858
prokMSA_id:27407 clone HW23
prokMSA_id:56234 clone mHK12.1 AJ517877
prokMSA_id:57386 clone E10.1 AJ517901
prokMSA_id:57390 clone mOO44.2 AJ517895
prokMSA_id:57391 clone mCMC46.6 AJ517892
prokMSA_id:57392 clone mCMC38.5 AJ517890
prokMSA_id:57395 clone mCMC46.5 AJ517891
prokMSA_id:57397 clone mHK36.1 AJ517879
prokMSA_id:70801 clone EMF51
1.1.3.4.6 NTC.AMYLOLYTICUS_SUBGROUP 67 seqs
1.1.3.4.6.2065 OTU 1 seq
prokMSA_id:46014 A016 clone A016
1.1.3.4.6.2081 OTU 8 seqs
prokMSA_id:639 str. MSP9. AB012051
prokMSA_id:649 str. MSP1
prokMSA_id:650 str. MSP11
prokMSA_id:651 str. MSP12
prokMSA_id:653 str. MSP16
prokMSA_id:654 str. MSP17
prokMSA_id:655 str. MSP22
prokMSA_id:656 str. MSP23
1.1.3.4.6.2086 OTU 1 seq
prokMSA_id:37730 Halobacteriaceae gen. sp. 56 
1.1.3.4.6.2091 OTU 1 seq
prokMSA_id:33887 sp. Lake Magadi isolate 82M4
1.1.3.4.6.2108 OTU 2 seqs
prokMSA_id:21201 clone HW88
prokMSA_id:29270 clone HW8
1.1.3.4.6.2136 OTU 3 seqs
prokMSA_id:30847 38B-1 
prokMSA_id:32775 41-1 
prokMSA_id:34918 Natronobacterium gregoryi 
1.1.3.4.6.2137 OTU 6 seqs
prokMSA_id:644 Halorubrum trapanicum NCIMB 767
prokMSA_id:647 Halorubrum trapanicum NCMB 784
prokMSA_id:666 str. L-11
prokMSA_id:45943 Natrinema sp. R-fish 
prokMSA_id:72482 Halobacterium trapanicum complete 
prokMSA_id:74122 Halophilic archaeum complete 
1.1.3.4.6.2142 OTU 2 seqs
prokMSA_id:27020 Halococcus tibetense AF435112
prokMSA_id:66381 haloarchaeon clone ZB-A22 
1.1.3.4.6.2163 OTU 1 seq
prokMSA_id:645 Halobacterium sp. str. arg-4
1.1.3.4.6.2176 OTU 1 seq
prokMSA_id:659 clone DEEP-2
1.1.3.4.6.2180 OTU 2 seqs
prokMSA_id:27978 Halobacterium cutirubrum NCIMB 763 operon AB073365
prokMSA_id:36299 Halobacterium cutirubrum NCIMB 763 rrnB operon
1.1.3.4.6.2197 OTU 1 seq
prokMSA_id:18525 sp. Little Lake Magadi isolate 93dLM4
1.1.3.4.6.2205 OTU 2 seqs
prokMSA_id:46771 clone HW25
prokMSA_id:49132 clone HW22
1.1.3.4.6.2207 OTU 2 seqs
prokMSA_id:658 clone 2MT16
prokMSA_id:17936 2C129 
1.1.3.4.6.2213 OTU 34 seqs
prokMSA_id:646 Natrinema thermotolerans str. PR 5
prokMSA_id:657 Natronorubrum bangense str. A33 AS 1.1984
prokMSA_id:660 Natronobacterium tibetense str. GA33
prokMSA_id:665 Haloterrigena turkmenica str. 4 VKM B-1734
prokMSA_id:668 Natrialba magadii NCIMB 2190
prokMSA_id:669 Natronobacterium wudunaoensis str. Y21
prokMSA_id:670 str. B1T
prokMSA_id:671 Natronobacterium chahannaoensis str. C112
prokMSA_id:672 Natrialba ATCC 43988 str. SSL1 ATCC 43988
prokMSA_id:673 str. 172P1
prokMSA_id:674 Natronococcus occultus ATCC 43101
prokMSA_id:675 Natronococcus amylolyticus str. Ah-36 JCM 9655
prokMSA_id:21979 Natrialba asiatica 
prokMSA_id:24766 Natrinema versiforme 
prokMSA_id:28138 Natrialba sp. Tunisia HMg-25 complete 
prokMSA_id:28549 Natronorubrum sp. Tenzan-10 
prokMSA_id:32045 sp. Little Lake Magadi isolate 93lLM4
prokMSA_id:32934 sp. Lake Magadi isolate 89M4
prokMSA_id:36767 Natrialba sp. Tunisia HMg-27 
prokMSA_id:38317 Natrialba aegyptiaca complete 
prokMSA_id:40112 Halobacteriaceae gen. sp. H1 
prokMSA_id:42055 sp. Lake Magadi isolate 86M4
prokMSA_id:43132 Halobacteriaceae gen. sp. 135 
prokMSA_id:43283 sp. Lake Natron isolate 98NT4
prokMSA_id:47016 Natronorubrum sp. Wadi Natrun-19 
prokMSA_id:51196 Natronobacterium innermongoliae 
prokMSA_id:52324 Natronococcus xinjiangense 
prokMSA_id:58361 Natronobacterium chagannuoerensis 
prokMSA_id:58987 Haloterrigena thermotolerans 
prokMSA_id:72038 Natrialba asiatica 
prokMSA_id:72475 Natrialba hulunbeirensis AS1.1986 
prokMSA_id:73832 Natrialba asiatica 
prokMSA_id:81102 Natrinema ajinwuensis 
prokMSA_id:83240 Natrinema sp. HM06 
1.1.3.4.7 HC.MORRHUAE_SUBGROUP 15 seqs
1.1.3.4.7.2189 OTU 5 seqs
prokMSA_id:678 Halococcus salifodinae str. Blp DSM 8989
prokMSA_id:679 Halococcus salifodinae str. Br3
prokMSA_id:684 Halococcus salifodinae str. BG 2/2
prokMSA_id:685 Halococcus saccharolyticus ATCC 49257
prokMSA_id:73359 Halococcus sp
1.1.3.4.7.2200 OTU 10 seqs
prokMSA_id:686 Halococcus morrhuae NRC 16008
prokMSA_id:687 Halococcus morrhuae
prokMSA_id:688 Halorubrum trapanicum JCM 8979
prokMSA_id:689 Halococcus morrhuae str. LD.3.1 C.B. van Niel ATCC 17082
prokMSA_id:17584 Halobacterium sp. NCIMB 734 
prokMSA_id:27023 Halobacterium sp. NCIMB 765 rrnB operon
prokMSA_id:38435 Halobacterium sp. NCIMB 765 operon
prokMSA_id:39472 Halococcus dombrowskii strain H4
prokMSA_id:52396 clone HW50 AJ344307
prokMSA_id:83880 Halococcus qingdaogense complete 
1.1.3.4.8 HAR.VALLISMORTIS_SUBGROUP 16 seqs
1.1.3.4.8.2064 OTU 1 seq
prokMSA_id:690 Haloarcula mukohataei
1.1.3.4.8.2066 OTU 2 seqs
prokMSA_id:691 str. MSP8. AB012050
prokMSA_id:692 str. MSP41
1.1.3.4.8.2069 OTU 1 seq
prokMSA_id:696 Halobacter utahensis str. AX-2
1.1.3.4.8.2111 OTU 5 seqs
prokMSA_id:20446 Halosimplex carlsbadense A AF320478
prokMSA_id:21614 Halosimplex carlsbadense B AF320479
prokMSA_id:84278 Halosimplex carlsbadense rrnB operon 
prokMSA_id:85089 Halosimplex carlsbadense operon genes 23S complete and 
prokMSA_id:85668 Halosimplex carlsbadense rrnB operon genes tRNA-Ala 23S comp
1.1.3.4.8.2115 OTU 3 seqs
prokMSA_id:18167 marine euryarchaeote DH148-Y19 
prokMSA_id:34968 marine euryarchaeote DH148-Y15 
prokMSA_id:51102 marine euryarchaeote DH148-Y16 
1.1.3.4.8.2135 OTU 3 seqs
prokMSA_id:47411 Halosimplex carlsbadense C 
prokMSA_id:83805 Halosimplex carlsbadense operon 
prokMSA_id:86270 Halosimplex carlsbadense rrnC operon genes tRNA-Ala 23S comp
1.1.3.4.8.2256 OTU 1 seq
prokMSA_id:73223 clone EMF3
1.1.3.5 THERMOPLASMALES_AND_RELATIVES 84 seqs
1.1.3.5.1 TPL.ACIDOPHILUM_SUBGROUP 72 seqs
1.1.3.5.1.2071 OTU 1 seq
prokMSA_id:716 str. DCM3921
1.1.3.5.1.2096 OTU 1 seq
prokMSA_id:43890 clone HTA-H9 
1.1.3.5.1.2118 OTU 8 seqs
prokMSA_id:20250 112D 
prokMSA_id:24419 113C 
prokMSA_id:29379 73A 
prokMSA_id:31891 66D 
prokMSA_id:34934 101B 
prokMSA_id:38604 71A AF268634
prokMSA_id:41358 Ar26 
prokMSA_id:54629 60B 
1.1.3.5.1.2122 OTU 1 seq
prokMSA_id:23572 euryarchaeote ME-450_P9 
1.1.3.5.1.2123 OTU 1 seq
prokMSA_id:53752 euryarchaeote ME-450_30 
1.1.3.5.1.2132 OTU 7 seqs
prokMSA_id:727 clone ABS23
prokMSA_id:23326 clone RS300-12 
prokMSA_id:26892 archaebacteria clone ARR19 AJ227932
prokMSA_id:45554 archaebacteria clone ARR16 AJ227929
prokMSA_id:48711 clone AS08-17 
prokMSA_id:49712 clone AS17-30 
prokMSA_id:74688 clone AS08-11 
1.1.3.5.1.2164 OTU 5 seqs
prokMSA_id:712 clone WCHD3-33
prokMSA_id:722 clone WCHD3-02
prokMSA_id:33637 clone HTA-C7 
prokMSA_id:45960 33-1 
prokMSA_id:62881 euryarchaeote clone:KuA16
1.1.3.5.1.2166 OTU 1 seq
prokMSA_id:710 Picrophilus oshimae str. KAW2/2 DSM 9789
1.1.3.5.1.2169 OTU 1 seq
prokMSA_id:713 clone SB95-72
1.1.3.5.1.2170 OTU 1 seq
prokMSA_id:714 clone KTK 4A
1.1.3.5.1.2178 OTU 6 seqs
prokMSA_id:721 Thermoplasma acidophilum str. 122-1B2
prokMSA_id:27173 Thermoplasma volcanium 
prokMSA_id:46145 Thermoplasma volcanium complete genome NC_002689
prokMSA_id:47351 Thermoplasma volcanium strain GSS1
prokMSA_id:47977 Thermoplasma acidophilum complete genome NC_002578
prokMSA_id:68998 Thermoplasma volcanium genomic complete section 6/6 AP000996
1.1.3.5.1.2179 OTU 1 seq
prokMSA_id:36228 clone archaeap1 
1.1.3.5.1.2186 OTU 2 seqs
prokMSA_id:16489 SC38 AF225458
prokMSA_id:71237 clone ARCP1-60 
1.1.3.5.1.2192 OTU 2 seqs
prokMSA_id:34273 rumen M2 
prokMSA_id:52339 rumen M7 
1.1.3.5.1.2194 OTU 1 seq
prokMSA_id:52811 maize root ZmrA19 
1.1.3.5.1.2198 OTU 1 seq
prokMSA_id:58156 clone AS1 
1.1.3.5.1.2204 OTU 1 seq
prokMSA_id:63282 clone ARCP1-30 
1.1.3.5.1.2227 OTU 4 seqs
prokMSA_id:720 Ferromonas metallovorans str. Y
prokMSA_id:29649 MS14 
prokMSA_id:65352 Ferroplasma sp. MT17 
prokMSA_id:85217 Ferroplasma acidiphilum strain DR1 
1.1.3.5.1.2229 OTU 1 seq
prokMSA_id:22294 Crenarchaeote SRI-298 
1.1.3.5.1.2239 OTU 1 seq
prokMSA_id:32461 clone A10 
1.1.3.5.1.2249 OTU 1 seq
prokMSA_id:724 clone vadinCA11
1.1.3.5.1.2251 OTU 1 seq
prokMSA_id:725 clone SCALE-3
1.1.3.5.1.2253 OTU 7 seqs
prokMSA_id:16713 euryarchaeote clone P4b-Ar-7 AF293504
prokMSA_id:30521 euryarchaeote clone P4b-Ar-10 AF293482
prokMSA_id:45098 euryarchaeote clone P4b-Ar-19 AF293491
prokMSA_id:74993 archaeal symbiont PA201 
prokMSA_id:76146 archaeal symbiont PA204 
prokMSA_id:76154 archaeal symbiont PA203 
prokMSA_id:76707 archaeal symbiont PA202 
1.1.3.5.1.2258 OTU 1 seq
prokMSA_id:30004 61D 
1.1.3.5.1.2265 OTU 13 seqs
prokMSA_id:14 clone VC2.1 Arc13. AF068820
prokMSA_id:15 clone pMC2A10
prokMSA_id:719 clone pSSMCA108
prokMSA_id:732 clone pISA42
prokMSA_id:30970 pPACMA-W 
prokMSA_id:35429 pPACMA-M 
prokMSA_id:41367 pPACMA-P 
prokMSA_id:55306 clone pEPR719 AF526962
prokMSA_id:56356 clone G26_C56 AF356635
prokMSA_id:63649 clone pEPR159 AF526964
prokMSA_id:63650 clone pEPR193 
prokMSA_id:63654 clone pEPR707 AF526961
prokMSA_id:68328 clone G26_C73 AF356637
1.1.3.5.1.2270 OTU 2 seqs
prokMSA_id:723 clone vadinDC79
prokMSA_id:44971 rumen M1 
1.1.3.5.2 ENV.SBAR16_SUBGROUP 10 seqs
1.1.3.5.2.2087 OTU 1 seq
prokMSA_id:86464 euryarchaeote clone: pCIRA110
1.1.3.5.2.2109 OTU 2 seqs
prokMSA_id:733 Santa Barbara Channel clone SBAR16
prokMSA_id:36345 euryarchaeote SB95-35 
1.1.3.5.2.2190 OTU 1 seq
prokMSA_id:48775 euryarchaeote AM-20A_123 
1.1.3.5.2.2303 OTU 6 seqs
prokMSA_id:734 coastal surface waters picoplankton from Oregon clone OARB
prokMSA_id:27739 euryarchaeote MERTZ_21CM_5 
prokMSA_id:88553 euryarchaeote 96C-131-17 AY288386
prokMSA_id:90085 euryarchaeote 96C-55-10 AY288390
prokMSA_id:90329 euryarchaeote 96C-55-08 AY288393
prokMSA_id:93343 clone BSA4-89m AY360483
1.1.3.5.3 ENV.25-7_SUBGROUP 2 seqs
1.1.3.5.3.2208 OTU 2 seqs
prokMSA_id:736 Santa Barbara Channel clone SBAR1A
prokMSA_id:21548 marine AEGEAN_58 
1.1.3.6 ARCHAEOGLOBALES 24 seqs
1.1.3.6.2083 OTU 1 seq
prokMSA_id:25153 AT425_ArB9 
1.1.3.6.2138 OTU 12 seqs
prokMSA_id:740 Archaeoglobus veneficus str. SNP6 DSM 11195
prokMSA_id:743 Archaeoglobus fulgidus str. VC-16 DSM 4304 . X05567
prokMSA_id:744 Archaeoglobus fulgidus. AE000782
prokMSA_id:750 clone VC2.1 Arc2
prokMSA_id:751 VC2.1 Arc4 complete 
prokMSA_id:755 Archaeoglobus fulgidus str. VC-16
prokMSA_id:50705 Archaeoglobus fulgidus complete genome NC_000917
prokMSA_id:69844 Archaeoglobus veneficus 23S and internal transcribed spacer 
prokMSA_id:71588 Archaeoglobus lithotrophicus TF2 23S and ITS1 strain TF2
prokMSA_id:71722 Archaeoglobus veneficus DSM 11195 
prokMSA_id:73240 Hyperthermophile str. 234 
prokMSA_id:74691 Archaeoglobus fulgidus section 142 of 172 of the complete ge
1.1.3.6.2149 OTU 3 seqs
prokMSA_id:746 clone pISA16
prokMSA_id:71793 GBa1r013 
prokMSA_id:72343 GBa1r010 
1.1.3.6.2181 OTU 1 seq
prokMSA_id:39716 AT_R040 
1.1.3.6.2187 OTU 1 seq
prokMSA_id:71091 isolate Eel-36a2G10 
1.1.3.6.2214 OTU 6 seqs
prokMSA_id:30999 GBa2r045 
prokMSA_id:68319 clone G72_C65 
prokMSA_id:68320 clone G72_C59 
prokMSA_id:68325 clone G72_C3 
prokMSA_id:70411 clone G72_C2 
prokMSA_id:71148 AT_R022 
1.1.4 THERMOCOCCALES 78 seqs
1.1.4.2 TC.AGGREGANS 1 seq
1.1.4.2.2199 OTU 1 seq
prokMSA_id:757 Thermococcus aggregans str. TY DSM 10597
1.1.4.3 PC.FURIOSUS_SUBGROUP 17 seqs
1.1.4.3.2076 OTU 2 seqs
prokMSA_id:763 Pyrococcus shinkaii str. OT3
prokMSA_id:73290 Pyrococcus horikoshii complete D45214
1.1.4.3.2182 OTU 15 seqs
prokMSA_id:758 Pyrococcus sp
prokMSA_id:759 Pyrococcus abyssi str. ST546
prokMSA_id:760 Pyrococcus abyssi str. ST549
prokMSA_id:761 Pyrococcus abyssi
prokMSA_id:762 Pyrococcus horikoshii str. OT3
prokMSA_id:765 Pyrococcus horikoshii str. JA-1
prokMSA_id:766 Pyrococcus furiosus
prokMSA_id:767 Pyrococcus hellenicus str. P3BK17S6-3-a3
prokMSA_id:768 Thermococcus chitonophagus str. GC74 DSM 10152 . X99570
prokMSA_id:769 Pyrococcus sp. str. AL585
prokMSA_id:49491 SAGMA-16 AB050246
prokMSA_id:70123 Pyrococcus horikoshii D87344
prokMSA_id:84011 clone:pCIRA-C AB095114
prokMSA_id:84479 Pyrococcus sp. Tc-2-70 AB095146
prokMSA_id:86433 Thermococcus sp. Tc-1-70 AB095143
1.1.4.4 TC.CELER_SUBGROUP 60 seqs
1.1.4.4.2075 OTU 1 seq
prokMSA_id:46965 33-P44A00 
1.1.4.4.2195 OTU 1 seq
prokMSA_id:24840 SAGMA-G 
1.1.4.4.2212 OTU 1 seq
prokMSA_id:771 clone pMCA256
1.1.4.4.2219 OTU 1 seq
prokMSA_id:772 clone pMC2A209
1.1.4.4.2220 OTU 1 seq
prokMSA_id:774 clone pMC2A17
1.1.4.4.2221 OTU 1 seq
prokMSA_id:775 clone pISA1
1.1.4.4.2224 OTU 1 seq
prokMSA_id:58788 Palaeococcus helgesonii ; -23S intergenic spacer complete ; 
1.1.4.4.2226 OTU 3 seqs
prokMSA_id:778 clone pMC2A249
prokMSA_id:779 clone pMC2A14. AB019715
prokMSA_id:780 clone pSSMCA1
1.1.4.4.2237 OTU 22 seqs
prokMSA_id:777 Thermococcus hydrothermalis str. AL662
prokMSA_id:784 Thermococcus celer str. VU 13 DSM 2476
prokMSA_id:789 Thermococcus barossii
prokMSA_id:791 Thermococcus sp. strain P6 
prokMSA_id:800 VC2.1 Arc5 complete 
prokMSA_id:802 VC2.1 Arc16 complete 
prokMSA_id:803 VC2.1 Arc35 complete 
prokMSA_id:814 Thermococcus stetteri str. K-3 DSM 5262
prokMSA_id:30578 Thermococcus acidaminovorans strain:DSM 11906
prokMSA_id:30964 Thermococcus gorgonarius strain:JCM 10552
prokMSA_id:31437 Thermococcus gorgonarius strain DSM 10395 
prokMSA_id:34911 Desulfurococcus sp. SY 
prokMSA_id:38459 Thermococcus acidaminovorans strain DSM 11906
prokMSA_id:43730 Thermococcus gammatolerans 
prokMSA_id:54119 Thermococcus sp. MZ2 ; internal transcribed spacer complete 
prokMSA_id:54189 Thermococcus sp. MZ1 ; internal transcribed spacer complete 
prokMSA_id:54583 Thermococcus sp. MZ12 ; internal transcribed spacer complete
prokMSA_id:54651 Thermococcus sp. MZ5 ; internal transcribed spacer complete 
prokMSA_id:54665 Thermococcus sp. MZ13 ; internal transcribed spacer complete
prokMSA_id:55014 Thermococcus sp. MZ6 ; internal transcribed spacer complete 
prokMSA_id:68329 clone G26_C48 
prokMSA_id:71185 Thermococcus kodakaraensis genes 23S complete and sequences
1.1.4.4.2238 OTU 1 seq
prokMSA_id:34194 SAGMA-I 
1.1.4.4.2240 OTU 6 seqs
prokMSA_id:790 Thermococcus zilligii str. AN1
prokMSA_id:807 Palaeococcus ferriphilus str. DMJ. AB019239
prokMSA_id:810 Thermococcus waimanguensis str. Wai21.S1
prokMSA_id:811 Thermococcus Rt3 str. Rt3
prokMSA_id:812 Thermococcus waiotapuense str. WT1
prokMSA_id:19786 Thermococcus waiotapuensis strain:JCM 10985
1.1.4.4.2242 OTU 5 seqs
prokMSA_id:786 Thermococcus mexicalis str. GY 869
prokMSA_id:787 Thermococcus sp. str. B1001
prokMSA_id:792 Thermococcus aegeaicus str. P5BK17S6-3-b2
prokMSA_id:46577 Thermococcus sibiricus 
prokMSA_id:48696 Thermococcus alcaliphilus strain:DSM 10322
1.1.4.4.2264 OTU 16 seqs
prokMSA_id:770 Thermococcus barophilus str. MP
prokMSA_id:799 VC2.1 Arc1 complete 
prokMSA_id:809 Thermococcus profundus str. DT5432 DSM 9503
prokMSA_id:818 Pyrococcus sp. str. KOD1
prokMSA_id:819 Thermococcus guaymasensis str. TYS JCM 10136
prokMSA_id:18391 Thermococcus radiophilus 
prokMSA_id:21914 Thermococcus pacificus strain:JCM 10553
prokMSA_id:32059 Thermococcus peptonophilus strain DSM 10343 AJ298871
prokMSA_id:32192 Thermococcus peptonophilus strain DSM 10343 AJ291810
prokMSA_id:33045 Thermococcus siculi strain:DSM 12349
prokMSA_id:34206 Thermococcus pacificus strain DSM 10394 
prokMSA_id:48271 Thermococcus siculi strain DSM 12349 AJ298870
prokMSA_id:48581 Thermococcus siculi strain DSM 12349 AJ291808
prokMSA_id:58650 Thermococcus sp. MV1099 23S and ITS 1
prokMSA_id:69804 C1_R034 
prokMSA_id:73209 Thermococcus marinus 
1.1.5 METHANOPYRALES 2 seqs
1.1.5.2114 OTU 2 seqs
prokMSA_id:822 Methanopyrus kandleri str. av19 DSM 6324
prokMSA_id:64372 Methanopyrus kandleri AV19 complete genome
1.2 CRENARCHAEOTA 295 seqs
1.2.1 THERMOPHILIC_CRENARCHAEOTA 174 seqs
1.2.1.2 ENVIRONMENTAL_CLONE_PJP33 1 seq
1.2.1.2.2648 OTU 1 seq
prokMSA_id:824 Mud Volcano area of Yellowstone NP "Black Pool" hot spring 
1.2.1.3 TMF.PENDENS_SUBGROUP 44 seqs
1.2.1.3.2566 OTU 3 seqs
prokMSA_id:826 Thermofilum pendens str. Hvv3 DSM 2475
prokMSA_id:49927 Thermofiliaceae str. SRI-370 
prokMSA_id:70948 crenarchaeote pBA1 
1.2.1.3.2568 OTU 6 seqs
prokMSA_id:34207 thermal soil clone YNPFFA4 
prokMSA_id:36629 thermal soil clone YNPFFA85 
prokMSA_id:37402 thermal soil clone YNPFFA1 
prokMSA_id:41999 thermal soil clone YNPFFA23 
prokMSA_id:45996 thermal soil clone YNPFFA108 
prokMSA_id:63276 clone ARCP1-35 
1.2.1.3.2573 OTU 2 seqs
prokMSA_id:852 clone Arc.2
prokMSA_id:47871 Arc.168 
1.2.1.3.2575 OTU 3 seqs
prokMSA_id:831 clone BBA6
prokMSA_id:23119 crenarchaeote MERTZ_2CM_269 
prokMSA_id:31024 crenarchaeote MERTZ_21CM_232 
1.2.1.3.2577 OTU 2 seqs
prokMSA_id:849 clone pUWA2
prokMSA_id:53714 clone A14 
1.2.1.3.2580 OTU 10 seqs
prokMSA_id:829 clone vadinDC69
prokMSA_id:835 clone pGrfC26
prokMSA_id:42699 WSB-11 AB055993
prokMSA_id:43667 62-2 
prokMSA_id:45742 72-1 
prokMSA_id:56717 crenarchaeote clone 44a-A1-4 
prokMSA_id:81841 methanogenic clone FenO1-
prokMSA_id:82394 methanogenic clone FenO- AJ548934
prokMSA_id:83224 clone AF87 AY092146
prokMSA_id:83474 clone AF9 AY092147
1.2.1.3.2581 OTU 5 seqs
prokMSA_id:832 clone Arc.1
prokMSA_id:834 clone Arc.119
prokMSA_id:30652 Arc.118 
prokMSA_id:42364 Arc.98 
prokMSA_id:69953 Arc.119 AF005762
1.2.1.3.2617 OTU 1 seq
prokMSA_id:838 clone pSL4
1.2.1.3.2618 OTU 1 seq
prokMSA_id:839 clone pSL50
1.2.1.3.2627 OTU 1 seq
prokMSA_id:847 clone pBRKC88
1.2.1.3.2628 OTU 1 seq
prokMSA_id:848 unnamed organism
1.2.1.3.2630 OTU 1 seq
prokMSA_id:68897 SAGMA-H 
1.2.1.3.2634 OTU 1 seq
prokMSA_id:854 clone pGrfB286
1.2.1.3.2635 OTU 1 seq
prokMSA_id:43314 clone A1 
1.2.1.3.2637 OTU 1 seq
prokMSA_id:72965 AT_R003 
1.2.1.3.2649 OTU 1 seq
prokMSA_id:828 clone pBRKC86
1.2.1.3.2653 OTU 1 seq
prokMSA_id:44205 clone KS60 
1.2.1.3.2652 OTU 1 seq
prokMSA_id:73046 GBa2r048 
1.2.1.3.2654 OTU 1 seq
prokMSA_id:830 clone pMC2A308
1.2.1.3.2655 OTU 1 seq
prokMSA_id:833 clone Arc.22
1.2.1.4 PYB.ISLANDICUM_SUBGROUP 31 seqs
1.2.1.4.2596 OTU 1 seq
prokMSA_id:872 Thermoproteus tenax
1.2.1.4.2597 OTU 1 seq
prokMSA_id:877 Thermocladium modestius str. IC-125 JCM 10088
1.2.1.4.2608 OTU 17 seqs
prokMSA_id:16312 Vulcanisaeta distributa strain:IC-052 AB063636
prokMSA_id:18315 Vulcanisaeta distributa strain:IC-017 AB063630
prokMSA_id:19003 Vulcanisaeta distributa strain:IC-065 AB063639
prokMSA_id:23083 Vulcanisaeta souniana strain:IC-060 AB063646
prokMSA_id:23289 Vulcanisaeta souniana strain:IC-059
prokMSA_id:23618 Vulcanisaeta distributa strain:IC-135 AB063641
prokMSA_id:27751 Vulcanisaeta distributa strain:IC-029 AB063632
prokMSA_id:30926 Vulcanisaeta distributa strain:IC-032
prokMSA_id:38823 Vulcanisaeta distributa strain:IC-051 AB063635
prokMSA_id:40703 Vulcanisaeta distributa strain:IC-124 AB063640
prokMSA_id:41394 Vulcanisaeta distributa strain:IC-019 AB063631
prokMSA_id:42441 Vulcanisaeta distributa strain:IC-058 AB063637
prokMSA_id:45499 Vulcanisaeta distributa strain:IC-030 AB063633
prokMSA_id:47601 Vulcanisaeta distributa strain:IC-140 AB063643
prokMSA_id:71811 Vulcanisaeta distributa strain:IC-141 AB063644
prokMSA_id:72845 Vulcanisaeta distributa strain:IC-064 AB063638
prokMSA_id:73455 Vulcanisaeta distributa strain:IC-136
1.2.1.4.2609 OTU 11 seqs
prokMSA_id:868 Pyrobaculum islandicum str. geo3
prokMSA_id:869 Pyrobaculum aerophilum str. IM2 DSM 7523 . L07510
prokMSA_id:870 Pyrobaculum neutrophilum str. NZ1
prokMSA_id:873 Thermoproteus neutrophilus JCM 9278
prokMSA_id:20435 Pyrobaculum arsenaticum strain PZ6 AJ277124
prokMSA_id:26139 crenarchaeote pBA2 AF176346
prokMSA_id:34186 Pyrobaculum organotrophum strain:JCM 9190
prokMSA_id:44220 Pyrobaculum oguniense 
prokMSA_id:52477 Pyrobaculum sp. WIJ3 
prokMSA_id:63979 Pyrobaculum oguniense genes homing endonuclease I-PogI and c
prokMSA_id:78804 Pyrobaculum calidifontis complete 
1.2.1.4.2650 OTU 1 seq
prokMSA_id:16428 Caldivirga maquilingensis 
1.2.1.5 PYRODICTIALES 48 seqs
1.2.1.5.1 PYR.OCCULTUM_SUBGROUP 10 seqs
1.2.1.5.1.2564 OTU 2 seqs
prokMSA_id:23461 pPACMA-I 
prokMSA_id:23664 pPACMA-X 
1.2.1.5.1.2598 OTU 1 seq
prokMSA_id:880 clone pSL123
1.2.1.5.1.2600 OTU 1 seq
prokMSA_id:888 clone pISA9
1.2.1.5.1.2631 OTU 1 seq
prokMSA_id:17296 crenarchaeote clone SUBT-13 
1.2.1.5.1.2656 OTU 5 seqs
prokMSA_id:884 clone pOWA19
prokMSA_id:885 clone pOWA54
prokMSA_id:886 clone pUWA43
prokMSA_id:63629 clone pEPR153 
prokMSA_id:70637 C1_R025 
1.2.1.5.2 AP.PERNIX_SUBGROUP 13 seqs
1.2.1.5.2.2590 OTU 1 seq
prokMSA_id:894 Aeropyrum pernix str. K1
1.2.1.5.2.2595 OTU 1 seq
prokMSA_id:28917 73D 
1.2.1.5.2.2607 OTU 8 seqs
prokMSA_id:901 clone VAL11
prokMSA_id:902 clone VAL81
prokMSA_id:903 clone VAL20
prokMSA_id:904 clone VAL42
prokMSA_id:905 clone VAL48
prokMSA_id:906 clone VAL29
prokMSA_id:907 clone VAL18
prokMSA_id:908 clone VAL76
1.2.1.5.2.2613 OTU 1 seq
prokMSA_id:900 str. JTB173
1.2.1.5.2.2633 OTU 1 seq
prokMSA_id:899 clone Arc.43
1.2.1.5.2.2641 OTU 1 seq
prokMSA_id:72647 Desulfurococcus sp. clone SUBT-9 
1.2.1.5.3 STH.MARINUS_SUBGROUP 16 seqs
1.2.1.5.3.2560 OTU 7 seqs
prokMSA_id:916 Staphylothermus marinus str. F1 DSM 3639
prokMSA_id:920 Staphylothermus achaiicus str. P8BK20S6-10-b1
prokMSA_id:56004 20a-15 clone 20a-15 AJ299156
prokMSA_id:59040 20a-25 clone 20a-25 AJ299158
prokMSA_id:59042 20a-17 clone 20a-17 AJ299157
prokMSA_id:59090 20a-3 clone 20a-3 AJ299150
prokMSA_id:59091 20a-2 clone 20a-2 AJ299149
1.2.1.5.3.2571 OTU 3 seqs
prokMSA_id:922 clone Arc.4
prokMSA_id:27534 Arc.212 
prokMSA_id:35833 Arc.148 
1.2.1.5.3.2576 OTU 2 seqs
prokMSA_id:921 Igneococcus islandicus str. Ko18
prokMSA_id:16514 Ignicoccus pacificus strain LPC33
1.2.1.5.3.2611 OTU 1 seq
prokMSA_id:66762 Ignicoccus sp. Kin4-I strain Kin4-I
1.2.1.5.3.2622 OTU 1 seq
prokMSA_id:917 unnamed organism
1.2.1.5.3.2623 OTU 1 seq
prokMSA_id:918 clone BBA2
1.2.1.5.3.2624 OTU 1 seq
prokMSA_id:919 clone pSL22
1.2.1.5.4 DCO.MOBILIS_SUBGROUP 9 seqs
1.2.1.5.4.2565 OTU 2 seqs
prokMSA_id:934 clone Arc.3
prokMSA_id:935 clone Arc.75
1.2.1.5.4.2605 OTU 6 seqs
prokMSA_id:929 Desulfurococcus mobilis DSM 2161
prokMSA_id:930 Desulfurococcus mobilis
prokMSA_id:932 unnamed organism
prokMSA_id:936 Sulfophobococcus zilligii str. K1 DSM 11193
prokMSA_id:22921 Desulfurococcaceae str. SRI-465 AF255606
prokMSA_id:23984 Desulfurococcus sp. SEA 
1.2.1.5.4.2639 OTU 1 seq
prokMSA_id:931 clone Arc.9
1.2.1.6 SULFOLOBUS_SUBGROUP_I 22 seqs
1.2.1.6.1 SUL.SOLFATARICUS_SUBGROUP 19 seqs
1.2.1.6.1.2561 OTU 19 seqs
prokMSA_id:938 Sulfolobus solfataricus str. Ron 12/III
prokMSA_id:940 Sulfolobus shibatae str. B12 DSM 5389
prokMSA_id:941 Sulfolobus solfataricus str. P1 DSM 1616
prokMSA_id:942 Sulfolobus solfataricus str. P1 IFO 15331 . D26490
prokMSA_id:54467 Sulfolobus solfataricus complete genome NC_002754
prokMSA_id:69935 Sulfolobus sp. NGB23/00 
prokMSA_id:70345 Sulfolobus sp. FF5/00 
prokMSA_id:71652 Sulfolobus sp. NL8/00 
prokMSA_id:71769 Sulfolobus sp. MV2/99 
prokMSA_id:73229 Sulfolobus sp. RC6/00 
prokMSA_id:74206 Sulfolobus sp. NGB6/00 
prokMSA_id:74215 Sulfolobus sp. AMP12/99 
prokMSA_id:92332 Sulfolobus sp. C51 AY247901
prokMSA_id:92401 Sulfolobus sp. B6A AY247897
prokMSA_id:92457 Sulfolobus sp. M14A AY247895
prokMSA_id:92579 Sulfolobus sp. N15B AY247900
prokMSA_id:92813 Sulfolobus sp. I2 AY247893
prokMSA_id:92884 Sulfolobus sp. I7 AY247894
prokMSA_id:93061 Sulfolobus sp. N15A AY247899
1.2.1.6.2 SUL.METALLICUS_SUBGROUP 3 seqs
1.2.1.6.2.2572 OTU 3 seqs
prokMSA_id:945 Sulfolobus sp. str. LM
prokMSA_id:946 Sulfolobus metallicus DSM 6482
prokMSA_id:947 Sulfolobus metallicus DSM 6482
1.2.1.7 SULFOLOBUS_SUBGROUP_II 18 seqs
1.2.1.7.1 SUL.ACIDOCALDARIUS_SUBGROUP 6 seqs
1.2.1.7.1.2570 OTU 6 seqs
prokMSA_id:950 Sulfolobus "thuringiensis" str. Ron 12/I. X90485
prokMSA_id:951 Sulfolobus acidocaldarius str. 98-3 ATCC 33909
prokMSA_id:952 Sulfolobus acidocaldarius. U05018
prokMSA_id:953 Sulfolobus solfataricus str. P1 DSM 1616
prokMSA_id:18034 Sulfolobus sp. MVSoil6/SC1 
prokMSA_id:71832 Sulfolobus sp. MVSoil3/SC2 
1.2.1.7.2 SL.AZORICUS_SUBGROUP 3 seqs
1.2.1.7.2.2610 OTU 3 seqs
prokMSA_id:954 Sulfolobus sp. str. B6/2
prokMSA_id:955 Stygiolobus azoricus str. FC6 DSM 6296
prokMSA_id:956 Stygiolobus azoricus str. FC6 DSM 6296
1.2.1.7.3 SFR.OHWAKUENSIS_SUBGROUP 9 seqs
1.2.1.7.3.2599 OTU 1 seq
prokMSA_id:959 clone FFSB5
1.2.1.7.3.2604 OTU 1 seq
prokMSA_id:963 clone MS1
1.2.1.7.3.2614 OTU 4 seqs
prokMSA_id:958 Sulfurisphaera ohwakuensis str. TA-1 IFO 15161
prokMSA_id:964 Sulfolobus yangmingensis str. YM
prokMSA_id:46167 Sulfolobus tokodaii complete genome
prokMSA_id:54912 Sulfolobus sp. and 23S complete and 
1.2.1.7.3.2615 OTU 3 seqs
prokMSA_id:29928 thermal soil clone YNPFFA30 
prokMSA_id:30893 thermal soil clone YNPFFA52 
prokMSA_id:35548 thermal soil clone YNPFFA2 
1.2.1.8 ACIDIANUS_SUBGROUP 10 seqs
1.2.1.8.2 ADI.BRIERLEYI_SUBGROUP 4 seqs
1.2.1.8.2.2647 OTU 4 seqs
prokMSA_id:973 Acidianus brierleyi
prokMSA_id:974 Acidianus brierleyi DSM 1651
prokMSA_id:975 Acidianus brierleyi IFO 15269
prokMSA_id:19329 Acidianus tengchongensis 
1.2.1.8.3 MTS.SEDULA_SUBGROUP 6 seqs
1.2.1.8.3.2567 OTU 6 seqs
prokMSA_id:977 Metallosphaera sedula
prokMSA_id:978 Metallosphaera sedula IFO 15509
prokMSA_id:979 Metallosphaera sedula DSM 5348
prokMSA_id:980 Metallosphaera prunae str. Ron 12/II DSM 10039
prokMSA_id:981 Metallosphaera J1 str. J1
prokMSA_id:41957 Metallosphaera sp. complete cds
1.2.2 NON-THERMOPHILIC_CRENARCHAEOTA 117 seqs
1.2.2.1 MARINE_CRENARCHAEOTA 115 seqs
1.2.2.1.2 ENVIRONMENTAL_CLONE_PVA2_SUBGROUP 1 seq
1.2.2.1.2.2640 OTU 1 seq
prokMSA_id:989 Pacific Ocean station 49 500m depth clone
1.2.2.1.4 ENVIRONMENTAL_CLONE_4B7_SUBGROUP 114 seqs
1.2.2.1.4.2563 OTU 1 seq
prokMSA_id:50209 pPCA4.4 
1.2.2.1.4.2574 OTU 3 seqs
prokMSA_id:1017 clone FFSB6
prokMSA_id:19586 Archaea sp. clone FFSA2 
prokMSA_id:41469 Archaea sp. clone FFSA1 
1.2.2.1.4.2579 OTU 2 seqs
prokMSA_id:1007 unnamed organism
prokMSA_id:1008 unnamed organism
1.2.2.1.4.2582 OTU 1 seq
prokMSA_id:1127 clone PM8
1.2.2.1.4.2583 OTU 1 seq
prokMSA_id:1128 clone PM23
1.2.2.1.4.2584 OTU 2 seqs
prokMSA_id:39230 crenarchaeote clone SUBT-14 AF361211
prokMSA_id:58501 clone:pHAuA-C 
1.2.2.1.4.2585 OTU 20 seqs
prokMSA_id:1050 unnamed organism
prokMSA_id:1056 unnamed organism
prokMSA_id:1099 clone pMC2A1
prokMSA_id:1100 clone pMC1A11
prokMSA_id:1101 clone pMC1A103
prokMSA_id:1129 clone C6
prokMSA_id:1130 clone C11
prokMSA_id:1131 clone C20
prokMSA_id:1133 clone C35
prokMSA_id:1134 clone C46
prokMSA_id:1135 clone C48
prokMSA_id:28779 marine archaeal group 1 crenarchaeote clone ST-12K13A
prokMSA_id:28911 marine archaeal group 1 crenarchaeote clone ST-3K4A
prokMSA_id:33041 crenarchaeote 19H08 
prokMSA_id:38520 crenarchaeote 15G10 ; and glutamate semialdehyde aminotransf
prokMSA_id:39914 SAGMA-1 
prokMSA_id:70288 CS_R008 
prokMSA_id:70553 crenarchaeote 74A4 genomic 
prokMSA_id:73495 C1_R010 
prokMSA_id:75293 crenarchaeote clone Gitt-GR-27
1.2.2.1.4.2586 OTU 1 seq
prokMSA_id:1132 clone C33
1.2.2.1.4.2587 OTU 9 seqs
prokMSA_id:1093 clone SB95-57
prokMSA_id:1102 clone pIVWA108
prokMSA_id:1103 clone pIVWA1. AB019727
prokMSA_id:1105 clone pIVWA11
prokMSA_id:1106 clone pIVWA2
prokMSA_id:1107 clone pIVWA3
prokMSA_id:1108 clone M17. U68604
prokMSA_id:34469 marine archaeal group 1 crenarchaeote clone ST-12K2A
prokMSA_id:63634 clone pEPR853 AF526983
1.2.2.1.4.2588 OTU 3 seqs
prokMSA_id:1005 clone 4B7
prokMSA_id:1126 clone PM7
prokMSA_id:46043 crenarchaeote 4B7 40 kb genomic fragment
1.2.2.1.4.2589 OTU 6 seqs
prokMSA_id:1140 clone SCA1150
prokMSA_id:1146 clone SCA1173
prokMSA_id:25116 SAGMA-2 
prokMSA_id:47778 SAGMA-W 
prokMSA_id:75056 crenarchaeote clone Gitt-GR-39
prokMSA_id:76611 crenarchaeote clone Gitt-GR-31
1.2.2.1.4.2591 OTU 10 seqs
prokMSA_id:1111 clone pGrfA4
prokMSA_id:1142 clone SCA1154
prokMSA_id:1143 clone SCA1158
prokMSA_id:1145 clone SCA1170
prokMSA_id:41594 crenarchaeote TRC23-10 
prokMSA_id:45484 crenarchaeote TRC132-3 
prokMSA_id:74966 crenarchaeote clone Gitt-GR-5
prokMSA_id:75314 crenarchaeote clone Gitt-GR-74
prokMSA_id:76642 crenarchaeote clone Gitt-GR-47
prokMSA_id:83832 crenarchaeote clone 54D9 
1.2.2.1.4.2593 OTU 5 seqs
prokMSA_id:19543 Crenarchaeote symbiont of Axinella damicornis 
prokMSA_id:31020 Crenarchaeote symbiont of Axinella sp
prokMSA_id:36985 Crenarchaeote symbiont of Axinella verrucosa 
prokMSA_id:69323 Cenarchaeum symbiosum strain A hypothetical protein 01 compl
prokMSA_id:69639 Cenarchaeum symbiosum strain B histone H1 binding protein hc
1.2.2.1.4.2594 OTU 2 seqs
prokMSA_id:1051 unnamed organism
prokMSA_id:1055 unnamed organism
1.2.2.1.4.2601 OTU 1 seq
prokMSA_id:1052 unnamed organism
1.2.2.1.4.2602 OTU 1 seq
prokMSA_id:70916 crenarchaeote isolate DOURO3 
1.2.2.1.4.2606 OTU 12 seqs
prokMSA_id:1011 clone FFSB1
prokMSA_id:1014 clone FFSB2
prokMSA_id:19206 Front Range soil crenarchaeote FRD38 
prokMSA_id:19287 crenarchaeote clone PSSBEM10-6
prokMSA_id:30300 Front Range soil crenarchaeote FRC1x2 
prokMSA_id:32046 Front Range soil crenarchaeote FRC33A 
prokMSA_id:35162 crenarchaeote clone PSPIHH28-2
prokMSA_id:76043 crenarchaeote clone JG36-GR-140
prokMSA_id:84196 crenarchaeote clone GRU11 
prokMSA_id:84510 crenarchaeote clone GRU10 
prokMSA_id:84669 crenarchaeote clone GRU19 
prokMSA_id:85692 crenarchaeote clone S248-7 
1.2.2.1.4.2612 OTU 1 seq
prokMSA_id:31165 SAGMA-8 
1.2.2.1.4.2616 OTU 1 seq
prokMSA_id:1029 Cenarchaeum symbiosum
1.2.2.1.4.2619 OTU 1 seq
prokMSA_id:1006 clone pSL12
1.2.2.1.4.2620 OTU 1 seq
prokMSA_id:1009 clone ACE-6
1.2.2.1.4.2621 OTU 8 seqs
prokMSA_id:16793 SAGMA-Z AB050231
prokMSA_id:18486 SAGMA-D 
prokMSA_id:30678 SAGMA-X 
prokMSA_id:46479 SAGMA-11 
prokMSA_id:49412 SAGMA-10 
prokMSA_id:73503 clone SRS62DAR03 
prokMSA_id:96490 clone EA1G9 AY186065
prokMSA_id:97287 clone EA1F4 AY186062
1.2.2.1.4.2625 OTU 15 seqs
prokMSA_id:1139 clone SCA1145
prokMSA_id:1141 clone SCA1151
prokMSA_id:1144 clone SCA1166
prokMSA_id:1147 clone SCA1175
prokMSA_id:24479 crenarchaeote TRC23-38 
prokMSA_id:26266 crenarchaeote TRC132-7 
prokMSA_id:30247 crenarchaeote TRC132-8 
prokMSA_id:32035 SAGMA-P 
prokMSA_id:32329 crenarchaeote TRC23-30 
prokMSA_id:39571 crenarchaeote TRC23-31 
prokMSA_id:43271 crenarchaeote TRC23-28 
prokMSA_id:46609 crenarchaeote TRC132-9 
prokMSA_id:51909 crenarchaeote TRC132-6 
prokMSA_id:71074 crenarchaeote 34 kb genomic fragment
prokMSA_id:76092 crenarchaeote clone Gitt-GR-78
1.2.2.1.4.2626 OTU 1 seq
prokMSA_id:1010 VC2.1 Arc31 complete 
1.2.2.1.4.2629 OTU 1 seq
prokMSA_id:1019 clone pMC2A36
1.2.2.1.4.2638 OTU 1 seq
prokMSA_id:22234 Front Range soil crenarchaeote FRA27 
1.2.2.1.4.2643 OTU 1 seq
prokMSA_id:20712 33-P38A00 
1.2.2.1.4.2645 OTU 1 seq
prokMSA_id:1148 clone SCA11
1.2.2.1.4.2646 OTU 1 seq
prokMSA_id:50748 SAGMA-A 
1.2.2.1.4.2651 OTU 1 seq
prokMSA_id:16284 C1_R043 
1.2.2.2 ENVIRONMENTAL_CLONE_PJP89 2 seqs
1.2.2.2.2603 OTU 1 seq
prokMSA_id:1171 Mud Volcano area of Yellowstone NP "Black Pool" hot spring 
1.2.2.2.2644 OTU 1 seq
prokMSA_id:38903 Arc.201 
1.2.3 ENVIRONMENTAL_CLONE_PJP27_SUBGROUP 4 seqs
1.2.3.2562 OTU 2 seqs
prokMSA_id:1173 Mud Volcano area of Yellowstone NP "Black Pool" hot spring 
prokMSA_id:49873 Korarchaeota SRI-306 
1.2.3.2569 OTU 2 seqs
prokMSA_id:1172 Mud Volcano area of Yellowstone NP "Black Pool" hot spring 
prokMSA_id:51224 korarchaeote pBA5 
2 BACTERIA 25117 seqs
2.1 THERMOPHILIC_OXYGEN_REDUCERS 78 seqs
2.1.220 OTU 5 seqs
prokMSA_id:1177 clone OPB13
prokMSA_id:1182 clone env.OPS 1
prokMSA_id:1183 clone env.OPS 4
prokMSA_id:1184 clone env.OPS 7
prokMSA_id:60550 Aquificales YNP-SS1 
2.1.256 OTU 1 seq
prokMSA_id:32720 Aquificales clone 
2.1.381 OTU 1 seq
prokMSA_id:32287 Hydrogenothermus marinus 
2.1.445 OTU 28 seqs
prokMSA_id:1174 Thermocrinis ruber str. OC 1/4. AJ005640
prokMSA_id:1199 Calderobacterium hydrogenophilum str. Z-829 . Z30242
prokMSA_id:1207 clone OPS132
prokMSA_id:1209 Hydrogenobacter thermophilus str. T3. Z30189
prokMSA_id:1210 Hydrogenobacter subterranea str. HGP1
prokMSA_id:1211 str. EM 17
prokMSA_id:1213 clone OPS165. AF027105
prokMSA_id:16683 Hydrogenobacter sp. MV4L2B strain MV4L2B
prokMSA_id:18011 Hydrogenobacter sp. PA14 strain PA16
prokMSA_id:21804 Thermocrinis sp. P2L2B strain P2L2B
prokMSA_id:22567 Thermocrinis albus strain HI 11/12
prokMSA_id:23410 Thermocrinis sp. clone SUBT-1 
prokMSA_id:25858 Aquificales str. SS5H1 AF301908
prokMSA_id:31233 Hydrogenobacter sp. GV8L3A strain GV8L3A
prokMSA_id:33986 Hydrogenobacter sp. BB4L1B strain BB4L1B
prokMSA_id:35025 Hydrogenobacter sp. PZ2AL1B strain PZ2AL1B
prokMSA_id:36754 Thermocrinis sp. UZ23L3A strain UZ23L3A
prokMSA_id:38669 Thermocrinis sp. H7L1B strain H7L1B
prokMSA_id:38815 Aquificales str. SRI-48 
prokMSA_id:39236 Hydrogenobacter sp. IT-7242 
prokMSA_id:46163 Hydrogenobacter sp. UZ27L2A strain UZ27L2A
prokMSA_id:51871 Aquificales pIce1 
prokMSA_id:52320 Thermocrinis sp. G3L1B strain G3L1B
prokMSA_id:60606 clone R57 
prokMSA_id:60621 clone Y04 
prokMSA_id:60624 clone Sed01 
prokMSA_id:67859 Bacillus sp. clone DGG36 
prokMSA_id:70459 Aquificales clone pKA 
2.1.653 OTU 3 seqs
prokMSA_id:1176 Hydrogenobacter acidophilus str. 3H-1
prokMSA_id:26906 clone B5 
prokMSA_id:43828 Hydrogenobaculum sp. NOR3L3B strain NOR3L3B
2.1.715 OTU 1 seq
prokMSA_id:1215 clone env.OPS 6
2.1.737 OTU 16 seqs
prokMSA_id:1186 clone env.OPS 14
prokMSA_id:17781 Aquificales clone SM2G01 
prokMSA_id:25727 Aquificales clone SM2G07 
prokMSA_id:27456 Aquificales clone SM2G04 
prokMSA_id:38487 Aquificales clone SM1B11 
prokMSA_id:42953 Aquificales pBB 
prokMSA_id:49376 Aquificales clone SM1G03 
prokMSA_id:56574 Aquificales clone:YUM915 AB073130
prokMSA_id:67472 Aquificales clone:YE3152
prokMSA_id:67473 Aquificales clone:YE2101 AB073125
prokMSA_id:67474 Aquificales clone:YE2921
prokMSA_id:67475 Aquificales clone:YE111 AB073123
prokMSA_id:67476 Aquificales clone:YE12
prokMSA_id:67477 Aquificales clone:YE31422
prokMSA_id:71370 Aquificaceae Az-Fu1 AF528192
prokMSA_id:72765 Aquificales clone pTthxG5 
2.1.751 OTU 1 seq
prokMSA_id:79191 Coprothermobacter sp. Dex80-3 strain Dex80-3
2.1.762 OTU 5 seqs
prokMSA_id:1189 VC2.1 bac39 complete 
prokMSA_id:1194 VC2.1 Bac10 complete 
prokMSA_id:1195 VC2.1 Bac11 complete 
prokMSA_id:1196 VC2.1 Bac27 complete 
prokMSA_id:1198 VC2.1 Bac33 complete 
2.1.82 OTU 17 seqs
prokMSA_id:1187 Aquifex pyrophilus 
prokMSA_id:30117 Aquificales str. CIR3017HO90 
prokMSA_id:32822 Aquifex sp. Gri14L3B strain Gri14L3B
prokMSA_id:38306 Aquifex aeolicus section 83 of 109 of the complete genome AE
prokMSA_id:39217 Aquifex aeolicus AJ309733
prokMSA_id:39591 Aquifex sp. Ob6 strain Ob6 AJ320224
prokMSA_id:51070 Aquifex aeolicus complete genome NC_000918
prokMSA_id:51605 Aquifex aeolicus section 41 of 109 of the complete genome
prokMSA_id:53595 Aquifex aeolicus complete genome AE000657
prokMSA_id:82720 Aquifex sp. Aq-365-85-NO3 
prokMSA_id:82818 Aquifex sp. Aq-1-85-NO3 
prokMSA_id:83172 Aquifex sp. Aq-365-85-1%O2 
prokMSA_id:83524 Aquifex sp. Aq-1-70-1%O2 
prokMSA_id:84742 Aquifex sp. Aq-1-85-1%O2 
prokMSA_id:85552 Aquifex sp. Aq-365-70-1%O2 
prokMSA_id:86227 Aquifex sp. Aq-I-70-1%O2 AB095175
prokMSA_id:86369 Aquifex sp. Aq-S-70-1%O2 AB095176
2.2 THERMOTOGALES 43 seqs
2.2.1 PETROTOGA_GROUP 4 seqs
2.2.1.809 OTU 4 seqs
prokMSA_id:1216 Petrotoga mobilis str. SJ95 DSM 10674
prokMSA_id:17828 Petrotoga siberica strain SL25T
prokMSA_id:51557 Petrotoga olearia strain SL24T
prokMSA_id:69492 Petrotoga mexicana 
2.2.2 GEOTOGA_GROUP 4 seqs
2.2.2.238 OTU 1 seq
prokMSA_id:79381 Thermotogales str. Dex60-32 strain Dex60-32
2.2.2.56 OTU 2 seqs
prokMSA_id:1218 Geotoga petraea str. T5 ATCC 51226
prokMSA_id:1219 Geotoga subterranea str. CC-1 ATCC 51225
2.2.2.729 OTU 1 seq
prokMSA_id:1220 str. MV1075
2.2.3 FERVIDOBACTERIUM_GROUP 4 seqs
2.2.3.732 OTU 1 seq
prokMSA_id:1223 Caldotoga fontana str. B4
2.2.3.735 OTU 1 seq
prokMSA_id:1227 Fervidobacterium gondwanense str. AB39 ACM 5017
2.2.3.780 OTU 2 seqs
prokMSA_id:18702 Fervidobacterium islandicum strain AW-1 
prokMSA_id:32030 Thermotogales sp. SRI-251 
2.2.4 THERMOSIPHO_GROUP 8 seqs
2.2.4.346 OTU 5 seqs
prokMSA_id:1231 Thermosipho IHB1 str. IHB1
prokMSA_id:40837 Thermosipho sp. DSM 13256 
prokMSA_id:42520 Thermosipho sp. TBA5 
prokMSA_id:50206 Thermosipho sp. DSM 6568 strain DSM 6568 RI19.B2
prokMSA_id:89466 Thermosipho sp. FD1 AB107770
2.2.4.51 OTU 1 seq
prokMSA_id:72302 Thermosipho sp. MV1063 
2.2.4.783 OTU 1 seq
prokMSA_id:1230 Thermosipho melanesiensis str. BI429 CIP 104789
2.2.4.819 OTU 1 seq
prokMSA_id:83498 Thermosipho ferriphilus 
2.2.5 THERMOTOGA_GROUP 5 seqs
2.2.5.587 OTU 3 seqs
prokMSA_id:1233 Thermotoga subterranea str. SL1 DSM 9912
prokMSA_id:1234 Thermotoga elfii str. SERB 6459 DSM 9442
prokMSA_id:62474 Thermotoga sp. TMO complete 
2.2.5.804 OTU 1 seq
prokMSA_id:1235 Thermotoga hypogea SEBR 7054
2.2.5.971 OTU 1 seq
prokMSA_id:38910 Thermotoga thermarum 
2.2.6 TT.MARITIMA_GROUP 14 seqs
2.2.6.573 OTU 13 seqs
prokMSA_id:1236 Thermotoga maritima str. MSB8 DSM 3109 . M21774
prokMSA_id:24284 Thermotoga maritima strain FJSS3-B.1
prokMSA_id:27647 Thermotoga sp. RQ2 strain RQ2 AJ401019
prokMSA_id:32773 Thermotoga neapolitana strain LA10
prokMSA_id:35101 Thermotoga neapolitana strain NES AJ401016
prokMSA_id:40929 Thermotoga sp. RQ7 strain RQ7 AJ401023
prokMSA_id:41353 Thermotoga neapolitana 
prokMSA_id:46327 Thermotoga sp. RKU-10 isolate:RKU-10
prokMSA_id:48407 Thermotoga sp. RKU-1 
prokMSA_id:49474 Thermotoga maritima complete genome NC_000853
prokMSA_id:50916 Thermotoga sp. SG1 strain SG1 AJ401022
prokMSA_id:70547 Thermotoga neapolitana strain LA4
prokMSA_id:72408 Thermotoga maritima strain SL7 AJ401017
2.2.6.826 OTU 1 seq
prokMSA_id:1240 clone OPB14
2.2.7 ENVIRONMENTAL_CLONE_OPB7_GROUP 4 seqs
2.2.7.828 OTU 1 seq
prokMSA_id:1241 str. EM 3
2.2.7.830 OTU 2 seqs
prokMSA_id:1243 clone OPB7
prokMSA_id:35305 Thermotogales sp. SRI-15 AF255594
2.2.7.831 OTU 1 seq
prokMSA_id:1248 clone TUG22
2.3 CTM.PROTEOLYTICUS_GROUP 2 seqs
2.3.848 OTU 1 seq
prokMSA_id:1249 Coprothermobacter platensis str. 3R DSM 11748
2.3.880 OTU 1 seq
prokMSA_id:1250 Coprothermobacter proteolyticus str. BT ATCC 35245
2.4 STRAIN.EM_19 2 seqs
2.4.41 OTU 2 seqs
prokMSA_id:1251 str. EM 19
prokMSA_id:16693 clone BH81 complete 
2.5 ENVIRONMENTAL_CLONE_OPB45_GROUP 19 seqs
2.5.230 OTU 1 seq
prokMSA_id:1260 Desulfurobacterium thermolithotrophum str. BSA
2.5.48 OTU 1 seq
prokMSA_id:52699 Thermodesulfobacterium sp. CIR29812 
2.5.515 OTU 1 seq
prokMSA_id:65699 soil clone S079 
2.5.524 OTU 2 seqs
prokMSA_id:1253 clone OPS67
prokMSA_id:1254 clone OPS68
2.5.62 OTU 3 seqs
prokMSA_id:1259 Thermodesulfobacterium hveragerdicum str. JSP
prokMSA_id:38674 Thermodesulfobacterium commune DSM 2178 AF418169
prokMSA_id:70598 Thermodesulfobacterium thermophilum strain DSM 1276 
2.5.667 OTU 10 seqs
prokMSA_id:1252 clone OPB45
prokMSA_id:1256 clone OPT4. AF027093
prokMSA_id:1257 clone OPT53. AF027094
prokMSA_id:1258 clone OPS7
prokMSA_id:27454 Geothermobacterium ferrireducens strain FW-1a 
prokMSA_id:39066 Thermodesulfotobacterium sp. SRI-93 
prokMSA_id:42031 Thermodesulfobacterium hydrogeniphilum 
prokMSA_id:43680 Thermodesulfobacterium sp. clone BSpN50 complete 
prokMSA_id:67861 Thermodesulfobacteriaceae clone DGG19 
prokMSA_id:72666 Thermodesulfotobacterium sp. SRI-27 
2.5.899 OTU 1 seq
prokMSA_id:1255 clone ORGANIC-1
2.7 GREEN_NON-SULFUR_BACTERIA_AND_RELATIVES 228 seqs
2.7.1 CHLOROFLEXUS_SUBDIVISION 95 seqs
2.7.1.1 CHLOROFLEXUS_ASSEMBLAGE 21 seqs
2.7.1.1.1041 OTU 1 seq
prokMSA_id:85874 clone FBP471 
2.7.1.1.1048 OTU 1 seq
prokMSA_id:70526 clone SBR2022
2.7.1.1.119 OTU 1 seq
prokMSA_id:38489 Green non-sulfur B1-5 
2.7.1.1.202 OTU 1 seq
prokMSA_id:72831 Chloroflexus sp. 396-1 strain 396-1
2.7.1.1.229 OTU 2 seqs
prokMSA_id:21812 Chloroflexaceae group clone P4-E04
prokMSA_id:47113 Chloroflexaceae group clone P5-E06
2.7.1.1.235 OTU 1 seq
prokMSA_id:1266 Herpetosiphon geysericola ATCC 23076
2.7.1.1.236 OTU 1 seq
prokMSA_id:20892 Sphaerobacter thermophilus strain DSM 20745T
2.7.1.1.299 OTU 1 seq
prokMSA_id:1282 Thermomicrobium roseum ATCC 27502
2.7.1.1.635 OTU 1 seq
prokMSA_id:28650 clone HTH4 
2.7.1.1.641 OTU 1 seq
prokMSA_id:72494 Chloroflexus aggregans strain DSM 9486
2.7.1.1.718 OTU 2 seqs
prokMSA_id:34391 Eikelboom 1851 Ben52 
prokMSA_id:63978 clone:R6-06 AB087523
2.7.1.1.818 OTU 2 seqs
prokMSA_id:37755 Chloroflexaceae group clone P5-F08
prokMSA_id:43935 Chloroflexaceae group clone P6-D01
2.7.1.1.942 OTU 4 seqs
prokMSA_id:56710 clone R08 AF407685
prokMSA_id:60577 clone B55 
prokMSA_id:60594 clone G32 
prokMSA_id:71275 Chloroflexus aurantiacus strain DSM 637 AJ308501
2.7.1.1.99 VARIOUS 2 seqs
2.7.1.2 ENVIRONMENTAL_CLONE_T78_GROUP 61 seqs
2.7.1.2.1022 OTU 2 seqs
prokMSA_id:35554 green nonsulfur MERTZ_0CM_325 
prokMSA_id:46319 green nonsulfur MERTZ_2CM_230 
2.7.1.2.1038 OTU 1 seq
prokMSA_id:29524 green nonsulfur MERTZ_21CM_197 
2.7.1.2.1051 OTU 1 seq
prokMSA_id:76852 clone JG37-AG-138
2.7.1.2.1061 OTU 1 seq
prokMSA_id:50483 green nonsulfur MERTZ_21CM_275 
2.7.1.2.109 OTU 1 seq
prokMSA_id:66908 clone SHD-194
2.7.1.2.180 OTU 1 seq
prokMSA_id:69766 clone SHA-31
2.7.1.2.183 OTU 1 seq
prokMSA_id:65480 SHD-58 
2.7.1.2.27 OTU 1 seq
prokMSA_id:22922 SHA-21 
2.7.1.2.284 OTU 1 seq
prokMSA_id:38885 green non-sulfur TIHP302-40 
2.7.1.2.320 OTU 1 seq
prokMSA_id:1293 clone OPT90
2.7.1.2.334 OTU 1 seq
prokMSA_id:1298 str. BD3-16
2.7.1.2.432 OTU 2 seqs
prokMSA_id:23428 sludge H39 
prokMSA_id:36737 sludge S41 
2.7.1.2.448 OTU 1 seq
prokMSA_id:39542 clone Car120rc 
2.7.1.2.537 OTU 24 seqs
prokMSA_id:2708 str. SBR1029. X84472
prokMSA_id:2726 unnamed organism. X84483
prokMSA_id:2739 str. SBR1064. X84498
prokMSA_id:17004 soil clone S002 AY037556
prokMSA_id:19034 soil clone S111 AY037625
prokMSA_id:20488 freshwater LCK-51 AF107330
prokMSA_id:21638 soil clone 1028-2 AF423206
prokMSA_id:22845 sludge S16 
prokMSA_id:40747 soil clone S054 AY037587
prokMSA_id:48198 soil clone S003 AY037557
prokMSA_id:67258 clone F13.34 
prokMSA_id:67292 clone F10.31 
prokMSA_id:67536 sludge H1 
prokMSA_id:67537 sludge A30 AF234698
prokMSA_id:67538 sludge H19 
prokMSA_id:67539 sludge A11b 
prokMSA_id:70551 soil clone 746-2 
prokMSA_id:71187 soil clone 666-2 
prokMSA_id:71675 clone SBR1029
prokMSA_id:72088 soil clone 572-2 
prokMSA_id:72308 soil clone 838-2 
prokMSA_id:73823 clone SBR1064
prokMSA_id:86049 Bacteroidetes clone BB-2-F8R AY214804
prokMSA_id:93900 clone P8-GEN-27 AY361935
2.7.1.2.634 OTU 2 seqs
prokMSA_id:49130 green nonsulfur MERTZ_21CM_278 
prokMSA_id:52047 green nonsulfur MERTZ_2CM_18 
2.7.1.2.693 OTU 2 seqs
prokMSA_id:37891 Crater Lake CL500-86 
prokMSA_id:51154 Crater Lake CL500-11 AF316759
2.7.1.2.695 OTU 5 seqs
prokMSA_id:1285 clone OPB65
prokMSA_id:1297 clone env.OPS 12
prokMSA_id:18359 green nonsulfur clone SM2G02 
prokMSA_id:52019 green nonsulfur clone SM2H10 
prokMSA_id:74684 green nonsulfur clone SM1B12 
2.7.1.2.765 OTU 1 seq
prokMSA_id:65481 SHD-71 
2.7.1.2.767 OTU 1 seq
prokMSA_id:65482 SHD-197 
2.7.1.2.788 OTU 5 seqs
prokMSA_id:1288 clone PENDANT-37
prokMSA_id:23867 green nonsulfur MERTZ_2CM_159 
prokMSA_id:26191 green nonsulfur MERTZ_21CM_236 
prokMSA_id:36235 green nonsulfur MERTZ_21CM_133 
prokMSA_id:56086 clone OB3_58 
2.7.1.2.827 OTU 1 seq
prokMSA_id:22225 GR/GS-296.II.265 clone GR/GS-296.II.265
2.7.1.2.905 OTU 2 seqs
prokMSA_id:1295 clone GCA112
prokMSA_id:1296 clone GCA004
2.7.1.2.927 OTU 1 seq
prokMSA_id:72863 green non-sulfur clone P. palm C 37
2.7.1.2.983 OTU 2 seqs
prokMSA_id:1287 clone SJA-15
prokMSA_id:52017 SHA-3 
2.7.1.3 ENVIRONMENTAL_CLONE_OPB92_GROUP 13 seqs
2.7.1.3.1070 OTU 1 seq
prokMSA_id:1304 clone LGd2
2.7.1.3.1072 OTU 1 seq
prokMSA_id:1305 clone LGd6
2.7.1.3.1075 OTU 1 seq
prokMSA_id:1306 clone LGd5
2.7.1.3.1076 OTU 1 seq
prokMSA_id:1307 clone LGd10
2.7.1.3.1080 OTU 3 seqs
prokMSA_id:1308 clone NTd42
prokMSA_id:1312 str. from Obsidian Pool hot spring Yellowstone National Park
prokMSA_id:40604 candidate division OP11 clone SM1F02 
2.7.1.3.12 OTU 1 seq
prokMSA_id:1315 clone LGd9
2.7.1.3.171 OTU 2 seqs
prokMSA_id:1302 clone LGd1
prokMSA_id:1303 clone LGd15
2.7.1.3.214 OTU 2 seqs
prokMSA_id:1310 clone OPB92
prokMSA_id:28223 candidate division OP11 clone SM1E10 
2.7.1.3.5 OTU 1 seq
prokMSA_id:1309 clone OPS128
2.7.2 DEINOCOCCUS-THERMUS_SUBDIVISION 133 seqs
2.7.2.1 THERMUS_GROUP 116 seqs
2.7.2.1.1 T.THERMOPHILUS_SUBGROUP 83 seqs
2.7.2.1.1.178 OTU 1 seq
prokMSA_id:67904 Thermus sp. C4 
2.7.2.1.1.193 OTU 2 seqs
prokMSA_id:20463 Marinothermus profundus strain 506T
prokMSA_id:85579 Oceanothermus sp. St55B 
2.7.2.1.1.753 OTU 3 seqs
prokMSA_id:45920 Thermus oshimai strain SPS-17T
prokMSA_id:46453 Thermus sp. T2 
prokMSA_id:60595 clone G24 
2.7.2.1.1.886 OTU 77 seqs
prokMSA_id:1316 Thermus thermophilus str. HB27. L09659
prokMSA_id:1317 Thermus sp. str. YSPID A.1
prokMSA_id:1318 clone OPB19
prokMSA_id:1319 clone OPB31
prokMSA_id:1320 clone OPB32
prokMSA_id:1324 clone env.OPS 15
prokMSA_id:1325 Thermus sp. str. ZHGIB A.4. L10071
prokMSA_id:1326 Thermus thermophilus str. HB-8 ATCC 27634
prokMSA_id:1328 Thermus sp. str. Fiji 3A.1
prokMSA_id:1331 Thermus sp. str. YS38. Z15062
prokMSA_id:1333 Thermus scotoductus str. SE-1 DSM 8553
prokMSA_id:1334 Thermus sp. str. NMX2 A.1
prokMSA_id:1335 Thermus SA-01 str. SA-01
prokMSA_id:1337 Thermus sp. str. HS A.1
prokMSA_id:1338 Thermus sp. str. TMY1. AB020888
prokMSA_id:1344 Thermus flavus str. AT-62. L09660
prokMSA_id:1345 Thermus aquaticus str. YT-1
prokMSA_id:1348 Thermus sp. str. ZHGI A.1. L09664
prokMSA_id:1349 Thermus thermophilus str. HB-8
prokMSA_id:1350 Thermus H21.73.f
prokMSA_id:1355 Thermus sp. str. ZFI A.2. L09662
prokMSA_id:1356 Thermus sp. str. ac-1
prokMSA_id:1357 Thermus sp. str. ac-7
prokMSA_id:1358 Thermus sp. str. ViI7
prokMSA_id:16358 AT425_EubC9 
prokMSA_id:17962 Thermus sp. SRI-248 
prokMSA_id:18463 Thermus igniterrae strain RF-4T Y18406
prokMSA_id:24092 Thermus kawarayuensis 
prokMSA_id:25836 Thermus sp. SRI-96 
prokMSA_id:26144 Thermus scotoductus strain ITI-252T
prokMSA_id:27993 Thermus sp. NTU-024 
prokMSA_id:29817 Thermus/Deinococcus group clone SM1A01 
prokMSA_id:30085 Thermus brockianus strain 15038T Y18409
prokMSA_id:33149 Thermus igniterrae strain HN1-8 Y18407
prokMSA_id:35173 Thermus thermophilus strain CS
prokMSA_id:37306 Thermus thermophilus strain X6
prokMSA_id:39025 Thermus antranikianus strain HN3-7T
prokMSA_id:40690 Thermus thermophilus strain CT1
prokMSA_id:41572 Thermus rehai 
prokMSA_id:45737 Thermus sp. IT-7254 
prokMSA_id:47782 Thermus igniterrae strain GE-2 Y18408
prokMSA_id:53657 Thermus sp. HR13 
prokMSA_id:55685 Thermus sp. G70-06 AF407738
prokMSA_id:55806 Thermus sp. G70-05 AF407737
prokMSA_id:60555 Thermus sp. Y55-11 
prokMSA_id:60556 Thermus sp. Y55-12 AF407748
prokMSA_id:60557 Thermus sp. Y55-10 AF407746
prokMSA_id:60558 Thermus sp. Y55-09 AF407745
prokMSA_id:60559 Thermus sp. Y55-08 AF407744
prokMSA_id:60560 Thermus sp. Y55-07 AF407743
prokMSA_id:60561 Thermus sp. B70-05 
prokMSA_id:60562 Thermus sp. B70-04 AF407741
prokMSA_id:60563 Thermus sp. G70-08 AF407740
prokMSA_id:60564 Thermus sp. G70-07 AF407739
prokMSA_id:60565 Thermus sp. R70-07 AF407736
prokMSA_id:60566 Thermus sp. R70-06 AF407735
prokMSA_id:60567 Thermus sp. Y70-07 AF407734
prokMSA_id:60568 Thermus sp. Y70-06 AF407733
prokMSA_id:60569 Thermus sp. Y70-05 AF407732
prokMSA_id:60605 clone R58 
prokMSA_id:60613 clone Y90 
prokMSA_id:60614 clone Y88 AF407682
prokMSA_id:60615 clone Y71 
prokMSA_id:60620 clone Y10 
prokMSA_id:60622 clone Y03 
prokMSA_id:63588 Thermus sp. RH-1514 
prokMSA_id:63589 Thermus sp. RH-1214 
prokMSA_id:63592 Thermus sp. RH-914 
prokMSA_id:67864 Thermus sp. clone DFQ34 
prokMSA_id:67865 Thermus sp. clone DFQ28 
prokMSA_id:67866 Thermus sp. clone DFQ37 
prokMSA_id:67868 Thermus sp. clone DFQ6 
prokMSA_id:71171 Thermus sp. YBJ-1 
prokMSA_id:72262 H21.73.f AF005751
prokMSA_id:75730 45 from Patent WO0246392 AX557347
prokMSA_id:81243 Thermus scotoductus clone 1-43 
prokMSA_id:81961 Thermus scotoductus clone 1-71 
2.7.2.1.2 T.FILIFORMIS_SUBGROUP 11 seqs
2.7.2.1.2.136 OTU 9 seqs
prokMSA_id:1360 Thermus filiformis
prokMSA_id:1383 Thermus sp. str. W28 A.1
prokMSA_id:1384 Thermus sp. str. Tok8 A.1
prokMSA_id:1385 Thermus sp. str. Tok20 A.1
prokMSA_id:1388 Thermus sp. str. Tok3 A.1
prokMSA_id:1392 Thermus sp. str. Rt4 1A
prokMSA_id:1393 Thermus sp. str. OK6 A.1
prokMSA_id:1394 Thermus sp. str. T351
prokMSA_id:38282 Thermus sp. clone 
2.7.2.1.2.638 OTU 2 seqs
prokMSA_id:1386 clone OPS1
prokMSA_id:2640 clone OPB88. AF027006
2.7.2.1.3 MEI.RUBER_SUBGROUP 22 seqs
2.7.2.1.3.563 OTU 1 seq
prokMSA_id:60062 Vulcanithermus medioatlanticus strain TR
2.7.2.1.3.678 OTU 1 seq
prokMSA_id:1404 Meiothermus chliarophilus str. ALT-8 DSM 9957
2.7.2.1.3.679 OTU 3 seqs
prokMSA_id:1405 Meiothermus silvanus str. V1-R2 DSM 9946
prokMSA_id:1406 Meiothermus silvanus str. GY-8. Y13598
prokMSA_id:1407 Meiothermus silvanus str. GY-10. Y13599
2.7.2.1.3.941 OTU 17 seqs
prokMSA_id:1395 Thermus sp. str. ac-17
prokMSA_id:1396 Meiothermus cerbereus str. GY-1 DSM 11376 . Y13594
prokMSA_id:1397 Meiothermus cerbereus str. GY-5. Y13595
prokMSA_id:1398 Thermus sp. str. ac-2
prokMSA_id:1400 Meiothermus ruber
prokMSA_id:1401 Meiothermus ruber str. 16105. Y13596
prokMSA_id:1402 Meiothermus ruber str. 16106. Y13597
prokMSA_id:1403 Meiothermus ruber str. Loginova 21 ATCC 35948
prokMSA_id:17405 Meiothermus rosaceus 
prokMSA_id:20802 Meiothermus taiwanensis strain WR-220 
prokMSA_id:26209 Meiothermus taiwanensis strain WR-30T 
prokMSA_id:56011 Thermus sp. R55-10 AF407749
prokMSA_id:56267 clone G21 
prokMSA_id:60587 clone B01 
prokMSA_id:60593 clone G34 
prokMSA_id:60612 clone R03 
prokMSA_id:69769 Meiothermus sp. R55-11 
2.7.2.2 DEINOCOCCUS_GROUP 17 seqs
2.7.2.2.124 OTU 5 seqs
prokMSA_id:1411 Deinococcus geothermalis str. AG-5a
prokMSA_id:1412 Deinococcus geothermalis str. RSPS-2a
prokMSA_id:1413 Deinococcus geothermalis str. AG-3a
prokMSA_id:1420 Deinococcus geothermalis str. E50053. AJ000002
prokMSA_id:1421 Deinococcus geothermalis str. E50053. Y15444
2.7.2.2.335 OTU 3 seqs
prokMSA_id:1414 Deinococcus murrayi str. ALT-1b
prokMSA_id:1415 Deinococcus murrayi str. RSPS-7a
prokMSA_id:1416 Deinococcus murrayi str. RSG-1.2
2.7.2.2.52 OTU 3 seqs
prokMSA_id:1417 Deinococcus radiodurans DSM 20539
prokMSA_id:25349 Deinococcus radiodurans DC 
prokMSA_id:55007 Deinococcus radiodurans chromosome 1 complete 
2.7.2.2.637 OTU 1 seq
prokMSA_id:62482 Deinococci clone LA7-B27N 
2.7.2.2.688 OTU 1 seq
prokMSA_id:1408 Deinococcus proteolyticus DSM 20540
2.7.2.2.700 OTU 1 seq
prokMSA_id:1410 Deinococcus radiophilus DSM 20551
2.7.2.2.720 OTU 1 seq
prokMSA_id:1419 Deinococcus radiopugnans ATCC 19172
2.7.2.2.920 OTU 1 seq
prokMSA_id:63290 clone RCP1-75 
2.7.2.2.996 OTU 1 seq
prokMSA_id:1418 Deinococcus radiodurans ATCC 35073
2.8 ENVIRONMENTAL_CLONE_OPB80_GROUP 28 seqs
2.8.114 OTU 1 seq
prokMSA_id:63289 clone RCP2-64 
2.8.127 OTU 1 seq
prokMSA_id:1431 clone SJA-171
2.8.130 OTU 1 seq
prokMSA_id:1432 clone SJA-176
2.8.148 OTU 1 seq
prokMSA_id:1435 clone SJA-22
2.8.211 OTU 2 seqs
prokMSA_id:1434 clone OPB80
prokMSA_id:1436 clone OPB90
2.8.308 OTU 4 seqs
prokMSA_id:30869 clone HTG11 AF418960
prokMSA_id:54457 clone HTF1 AF418958
prokMSA_id:57713 clone HTD12 
prokMSA_id:57714 clone HTB7 
2.8.326 OTU 1 seq
prokMSA_id:85439 clone ST01-SN3H 
2.8.457 OTU 1 seq
prokMSA_id:57715 clone HTC12 
2.8.459 OTU 3 seqs
prokMSA_id:58376 candidate division OP10 clone SBRT162 AF368189
prokMSA_id:58377 candidate division OP10 clone SBRT161 AF368187
prokMSA_id:58378 candidate division OP10 clone SBRT152 
2.8.484 OTU 1 seq
prokMSA_id:63206 clone FW68 
2.8.495 OTU 3 seqs
prokMSA_id:46234 firmicute clone SM2H09 
prokMSA_id:46324 firmicute clone SM2D03 
prokMSA_id:46343 clone SM2G08 
2.8.514 OTU 2 seqs
prokMSA_id:66823 candidate division OP10 clone SBRA309 
prokMSA_id:66825 candidate division OP10 clone SBRA136 
2.8.650 OTU 2 seqs
prokMSA_id:17343 CFB/Green sulfur group clone KL-11-1-13 AF408271
prokMSA_id:80475 candidate division OP10 clone W1-4H 
2.8.676 OTU 1 seq
prokMSA_id:71249 SBR1039 
2.8.728 OTU 1 seq
prokMSA_id:81869 clone ZZ12AC2 
2.8.763 OTU 1 seq
prokMSA_id:1429 clone OPB50
2.8.903 OTU 1 seq
prokMSA_id:32254 WD294 clone WD294
2.8.925 OTU 1 seq
prokMSA_id:41280 UASB_TL26 complete 
2.9 LEPTOSPIRILLUM-NITROSPIRA 107 seqs
2.9.1 NITROSPIRA_GROUP 44 seqs
2.9.1.1 NSP.MARINA_SUBGROUP 6 seqs
2.9.1.1.199 OTU 1 seq
prokMSA_id:1443 Nitrospira marina
2.9.1.1.216 OTU 1 seq
prokMSA_id:1449 Cytophaga sp. str. BD3-8
2.9.1.1.255 OTU 1 seq
prokMSA_id:1450 clone Sva0777
2.9.1.1.269 OTU 1 seq
prokMSA_id:70898 clone TK24
2.9.1.1.984 OTU 2 seqs
prokMSA_id:75438 Nitrospira sp. clone JG37-AG-131
prokMSA_id:76201 clone JG37-AG-70
2.9.1.2 NSP.MOSCOVIENSIS_SUBGROUP 38 seqs
2.9.1.2.1031 OTU 1 seq
prokMSA_id:65688 soil clone S0126 
2.9.1.2.179 OTU 1 seq
prokMSA_id:60596 clone G19 
2.9.1.2.260 OTU 1 seq
prokMSA_id:1457 clone K20-81
2.9.1.2.278 OTU 1 seq
prokMSA_id:1458 clone K20-78
2.9.1.2.407 OTU 1 seq
prokMSA_id:46321 Green Bay ferromanganous micronodule MNB2 
2.9.1.2.543 OTU 1 seq
prokMSA_id:47795 clone t015 
2.9.1.2.589 OTU 2 seqs
prokMSA_id:44024 sludge A31 AF234694
prokMSA_id:52208 sludge S47 
2.9.1.2.854 OTU 1 seq
prokMSA_id:1495 clone 1404-16
2.9.1.2.860 OTU 15 seqs
prokMSA_id:1460 Nitrospira sp
prokMSA_id:1461 Nitrospira sp
prokMSA_id:1462 Nitrospira sp
prokMSA_id:1463 Nitrospira sp
prokMSA_id:1464 Nitrospira sp
prokMSA_id:1465 Nitrospira sp
prokMSA_id:1466 Nitrospira sp
prokMSA_id:1467 Nitrospira sp
prokMSA_id:1471 Nitrospira sp
prokMSA_id:1473 Nitrospira sp
prokMSA_id:1474 Nitrospira sp
prokMSA_id:1480 clone A-11
prokMSA_id:1481 clone A-4
prokMSA_id:1493 Nitrospira cf. moscoviensis SBR2016 str. SBR2016
prokMSA_id:19768 PHOS-HE34 
2.9.1.2.864 OTU 14 seqs
prokMSA_id:1456 Nitrospira moscoviensis str. M-1 DSM 10035
prokMSA_id:1468 Nitrospira sp
prokMSA_id:1472 Nitrospira sp
prokMSA_id:1475 Nitrospira sp
prokMSA_id:1490 Nitrospira sp
prokMSA_id:1491 Nitrospira cf. moscoviensis SBR1015 str. SBR1015
prokMSA_id:1492 Nitrospira cf. moscoviensis SBR1024 str. SBR1024
prokMSA_id:1494 Nitrospira cf. moscoviensis SBR2046 str. SBR2046
prokMSA_id:38830 Green Bay ferromanganous micronodule MNC2 
prokMSA_id:50234 clone HT2BB6 AF418966
prokMSA_id:85357 clone CCU23 AY221079
prokMSA_id:88224 DSSD62 AY328760
prokMSA_id:88698 DSSD16 AY328715
prokMSA_id:93640 Nitrospira sp. clone JG36-GS-2 AJ582041
2.9.2 STR.SBR1108 1 seq
2.9.2.663 OTU 1 seq
prokMSA_id:32174 SBR1108 
2.9.3 LEPTOSPIRILLUM_GROUP 40 seqs
2.9.3.1 LPP.FERROOXIDANS_SUBGROUP 31 seqs
2.9.3.1.157 OTU 11 seqs
prokMSA_id:1509 Leptospirillum ferrooxidans
prokMSA_id:1510 clone TRA1-10
prokMSA_id:17118 Leptospirillum ferrooxidans strain CF12 complete 
prokMSA_id:17578 Leptospirillum ferrooxidans strain P3a complete 
prokMSA_id:24590 Leptospirillum ferrooxidans strain Chil-Lf2 complete 
prokMSA_id:28578 Leptospirillum ferrooxidans strain 49879 complete 
prokMSA_id:30465 Leptospirillum ferrooxidans strain Parys complete 
prokMSA_id:39980 Leptospirillum ferrooxidans strain Sy complete 
prokMSA_id:40142 Leptospirillum sp. NOen1 
prokMSA_id:41859 Leptospirillum ferrooxidans strain BCT2 complete 
prokMSA_id:58308 clone BA39 
2.9.3.1.194 OTU 17 seqs
prokMSA_id:1499 clone cOS17. X86772
prokMSA_id:1500 Leptospirillum sp. DSM 2391
prokMSA_id:1503 Leptospirillum ferrooxidans
prokMSA_id:1507 clone cOS7
prokMSA_id:28124 Leptospirillum sp. K01 
prokMSA_id:29535 Leptospirillum ferriphilum strain Fairview AF356830
prokMSA_id:29635 Leptospirillum sp. TzT-JG-3 
prokMSA_id:34533 Leptospirillum ferrooxidans strain TzT-B1-K3
prokMSA_id:38108 Leptospirillum sp. strain DSM 2391
prokMSA_id:38542 Leptospirillum ferrooxidans strain TzT-B1-K4
prokMSA_id:38928 Leptospirillum sp. isolate LA
prokMSA_id:39717 Leptospirillum ferriphilum strain ATCC 49881 AF356829
prokMSA_id:41525 Leptospirillum sp. TzT-JG-24 
prokMSA_id:43208 Leptospirillum sp. K16 
prokMSA_id:45840 BA24 
prokMSA_id:50647 Leptospirillum ferriphilum strain Warwick 
prokMSA_id:56048 Leptospirillum sp. MT6 
2.9.3.1.611 OTU 1 seq
prokMSA_id:58314 clone AW11 
2.9.3.1.705 OTU 1 seq
prokMSA_id:77042 actinobacterium clone Sh765B-AG-45
2.9.3.1.738 OTU 1 seq
prokMSA_id:76626 clone JG34-KF-252
2.9.3.2 ENVIRONMENTAL_CLONE_C0S62 9 seqs
2.9.3.2.240 OTU 3 seqs
prokMSA_id:56204 clone BA33 
prokMSA_id:58317 clone AW4 
prokMSA_id:63293 clone RCP2-12 
2.9.3.2.81 OTU 1 seq
prokMSA_id:1511 clone cOS62
2.9.3.2.833 OTU 5 seqs
prokMSA_id:54251 BA29 
prokMSA_id:58150 clone ASL9 
prokMSA_id:58311 clone AW5 
prokMSA_id:58316 clone AW1 
prokMSA_id:63295 clone RCP1-70 
2.9.4 TDV.YELLOWSTONII_GROUP 22 seqs
2.9.4.15 OTU 1 seq
prokMSA_id:1526 str. BD2-6
2.9.4.16 OTU 1 seq
prokMSA_id:1528 clone OPI-2
2.9.4.18 OTU 1 seq
prokMSA_id:1529 clone OPB67A
2.9.4.22 OTU 3 seqs
prokMSA_id:1524 clone TG25
prokMSA_id:1525 clone TG33
prokMSA_id:1704 clone TG14
2.9.4.287 OTU 4 seqs
prokMSA_id:1523 Thermodesulfovibrio islandicus str. R1ha3
prokMSA_id:1531 Thermodesulfovibrio TGL-LS1 str. TGL-LS1
prokMSA_id:1532 Thermodesulfovibrio TSL-P1 str. TSL-P1
prokMSA_id:23948 Nitrospira sp. clone 
2.9.4.366 OTU 1 seq
prokMSA_id:63218 clone FW114 
2.9.4.443 OTU 1 seq
prokMSA_id:34433 clone GOUTA19 
2.9.4.518 OTU 1 seq
prokMSA_id:51852 Saltmarsh clone LCP-6 
2.9.4.542 OTU 1 seq
prokMSA_id:63221 clone FW19 
2.9.4.544 OTU 1 seq
prokMSA_id:63223 clone FW5 
2.9.4.577 OTU 2 seqs
prokMSA_id:27466 Nitrospira sp. SRI-237 
prokMSA_id:46856 Nitrospira sp. SRI-9 AF255603
2.9.4.643 OTU 1 seq
prokMSA_id:43630 Nitrospira sp. clone SUBT-7 
2.9.4.655 OTU 1 seq
prokMSA_id:77126 Nitrospirae clone S15A-MN30
2.9.4.681 OTU 1 seq
prokMSA_id:63220 clone FW27 
2.9.4.697 OTU 1 seq
prokMSA_id:63224 clone FW118 
2.9.4.982 OTU 1 seq
prokMSA_id:30232 Nitrospira group MERTZ_2CM_109 
2.10 PROSTHECOBACTER_GROUP 154 seqs
2.10.1 ENVIRONMENTAL_CLONE_WCHB1-41_SUBGROUP 46 seqs
2.10.1.108 OTU 1 seq
prokMSA_id:25675 Verrucomicrobia MERTZ_21CM_62 
2.10.1.111 OTU 1 seq
prokMSA_id:62665 Verrucomicrobia clone ML635J-35 
2.10.1.146 OTU 1 seq
prokMSA_id:24730 Verrucomicrobia MERTZ_2CM_293 
2.10.1.169 OTU 1 seq
prokMSA_id:71809 Verrucomicrobia clone LD1-PA26 
2.10.1.187 OTU 2 seqs
prokMSA_id:1542 clone vadinHB65
prokMSA_id:31745 AA08 
2.10.1.21 OTU 1 seq
prokMSA_id:63770 Verrucomicrobia clone LD1-PB9 
2.10.1.24 OTU 1 seq
prokMSA_id:63772 Verrucomicrobia clone LD1-PB3 
2.10.1.253 OTU 1 seq
prokMSA_id:25775 Verrucomicrobia MERTZ_2CM_283 
2.10.1.361 OTU 1 seq
prokMSA_id:43552 clone KS52 
2.10.1.40 OTU 1 seq
prokMSA_id:39097 verrucomicrobium DEV055 clone DEV055
2.10.1.427 OTU 1 seq
prokMSA_id:35755 equine intestinal clone:YT6
2.10.1.446 OTU 2 seqs
prokMSA_id:63783 Verrucomicrobia clone LD1-PA37 
prokMSA_id:63784 Verrucomicrobia clone LD1-PA34 
2.10.1.469 OTU 1 seq
prokMSA_id:38307 clone Car98rb 
2.10.1.486 OTU 1 seq
prokMSA_id:33256 verrucomicrobium DEV045 clone DEV045
2.10.1.491 OTU 1 seq
prokMSA_id:1535 clone WCHA1-33
2.10.1.493 OTU 1 seq
prokMSA_id:1536 clone WCHA1-80
2.10.1.496 OTU 1 seq
prokMSA_id:1538 clone RFP12
2.10.1.504 OTU 1 seq
prokMSA_id:1539 clone CLEAR-26
2.10.1.510 OTU 1 seq
prokMSA_id:1540 clone WCHB1-41
2.10.1.521 OTU 1 seq
prokMSA_id:1541 clone vadinBE97
2.10.1.525 OTU 1 seq
prokMSA_id:1544 clone BURTON-54
2.10.1.526 OTU 1 seq
prokMSA_id:1545 clone CLEAR-12
2.10.1.530 OTU 1 seq
prokMSA_id:63771 Verrucomicrobia clone LD1-PB20 
2.10.1.532 OTU 1 seq
prokMSA_id:63774 Verrucomicrobia clone LD1-PB2 
2.10.1.533 OTU 1 seq
prokMSA_id:63776 Verrucomicrobia clone LD1-PB12 
2.10.1.539 OTU 3 seqs
prokMSA_id:33164 equine intestinal sp. DL14 clone DL14
prokMSA_id:44416 equine intestinal sp. DL12 clone DL12
prokMSA_id:45703 equine intestinal sp. PL16 clone PL16
2.10.1.547 OTU 1 seq
prokMSA_id:63777 Verrucomicrobia clone LD1-PB1 
2.10.1.559 OTU 1 seq
prokMSA_id:63790 Verrucomicrobia clone LD1-PA20 
2.10.1.586 OTU 1 seq
prokMSA_id:1543 clone Sva0107a
2.10.1.615 OTU 1 seq
prokMSA_id:39740 Verrucomicrobia MERTZ_2CM_235 
2.10.1.629 OTU 1 seq
prokMSA_id:70013 Verrucomicrobia clone LD1-PA50 
2.10.1.686 OTU 1 seq
prokMSA_id:70602 a2b018 
2.10.1.692 OTU 1 seq
prokMSA_id:37080 verrucomicrobiales Sva0585 
2.10.1.760 OTU 3 seqs
prokMSA_id:62664 Verrucomicrobia clone ML623J-15 
prokMSA_id:63827 Verrucomicrobia clone ML316M-1 
prokMSA_id:63828 Verrucomicrobia clone ML1228J-2 
2.10.1.806 OTU 4 seqs
prokMSA_id:61852 Verrucomicrobia clone R103-B35 
prokMSA_id:61853 Verrucomicrobia clone R76-B18 
prokMSA_id:61854 Verrucomicrobia clone R76-B66 
prokMSA_id:61856 Verrucomicrobia clone R76-B128 
2.10.1.885 OTU 1 seq
prokMSA_id:69582 soil PBS-III-26 
2.10.1.985 OTU 1 seq
prokMSA_id:37973 soil PBS-III-20 
2.10.2 VER.SP_STR_VEGLC2_SUBGROUP 19 seqs
2.10.2.103 OTU 1 seq
prokMSA_id:39216 Rhizosphere soil clone RSC-II-64 
2.10.2.110 OTU 1 seq
prokMSA_id:33333 Verrucomicrobia MERTZ_2CM_57 
2.10.2.29 OTU 6 seqs
prokMSA_id:1550 clone HstpL11
prokMSA_id:1551 clone HstpL20
prokMSA_id:1552 clone HstpL53
prokMSA_id:1553 clone HstpL65
prokMSA_id:41135 Fucophilus fucoidanolyticus 
prokMSA_id:74031 CHAB-II-49 5' 
2.10.2.433 OTU 1 seq
prokMSA_id:63314 clone RCP2-6 
2.10.2.554 OTU 1 seq
prokMSA_id:1554 clone EKHO-20
2.10.2.555 OTU 1 seq
prokMSA_id:1556 clone vadinHA64
2.10.2.567 OTU 1 seq
prokMSA_id:1565 clone RB39
2.10.2.568 OTU 1 seq
prokMSA_id:1566 clone TM18
2.10.2.646 OTU 5 seqs
prokMSA_id:17862 rumen 2C28d-9 
prokMSA_id:95381 Verrucomicrobia clone NE53 AJ575736
prokMSA_id:95864 Verrucomicrobia clone NE55 AJ575738
prokMSA_id:96571 Verrucomicrobia clone NE37 AJ575735
prokMSA_id:96658 Verrucomicrobia clone NE54 AJ575737
2.10.2.731 OTU 1 seq
prokMSA_id:25549 FukuN111 
2.10.3 ENVIRONMENTAL_CLONE_OPB35_SUBGROUP 20 seqs
2.10.3.11 OTU 1 seq
prokMSA_id:17035 sludge H2 
2.10.3.145 OTU 1 seq
prokMSA_id:31747 verrucomicrobium DEV008 clone DEV008
2.10.3.293 OTU 1 seq
prokMSA_id:52814 verrucomicrobium DEV114 clone DEV114
2.10.3.296 OTU 2 seqs
prokMSA_id:30852 Chlamydiales/Verrucomicrobia group clone 1_29a AJ431300
prokMSA_id:37435 Agricultural soil clone SC-I-74 
2.10.3.357 OTU 1 seq
prokMSA_id:21798 verrucomicrobium DEV059 clone DEV059
2.10.3.399 OTU 1 seq
prokMSA_id:35236 Verrucomicrobia EV107 
2.10.3.44 OTU 1 seq
prokMSA_id:27626 Rhizosphere soil clone RSC-II-18 
2.10.3.560 OTU 1 seq
prokMSA_id:63231 clone FW49 
2.10.3.581 OTU 1 seq
prokMSA_id:1572 clone OPB35
2.10.3.607 OTU 1 seq
prokMSA_id:1585 clone RB01
2.10.3.610 OTU 1 seq
prokMSA_id:1587 clone RB14
2.10.3.660 OTU 4 seqs
prokMSA_id:26596 Verrucomicrobia EV134 
prokMSA_id:27540 Verrucomicrobia EV106 
prokMSA_id:41724 Verrucomicrobia EV104 AJ132482
prokMSA_id:54478 Verrucomicrobia EV102 AJ132480
2.10.3.712 OTU 2 seqs
prokMSA_id:63232 clone FW4 
prokMSA_id:72827 Verrucomicrobia clone 12-30 AF351215
2.10.3.772 OTU 1 seq
prokMSA_id:81873 Verrucomicrobia clone VC12 
2.10.3.820 OTU 1 seq
prokMSA_id:31253 verrucomicrobium DEV020 clone DEV020
2.10.4 PRSB.DEJONGEII_SUBGROUP 35 seqs
2.10.4.1000 OTU 1 seq
prokMSA_id:35295 verrucomicrobium DEV010 clone DEV010
2.10.4.1062 OTU 1 seq
prokMSA_id:1594 clone HstpL102
2.10.4.1063 OTU 1 seq
prokMSA_id:1596 Verrucomicrobium spinosum str. 145 DSM 4136
2.10.4.1065 OTU 1 seq
prokMSA_id:1597 clone HstpL71
2.10.4.133 OTU 2 seqs
prokMSA_id:23971 sludge A38 
prokMSA_id:35008 sludge A21 
2.10.4.203 OTU 6 seqs
prokMSA_id:17463 clone S30-1 AJ400240
prokMSA_id:18109 clone L10-6
prokMSA_id:24442 isolate HuCC13
prokMSA_id:31006 clone HuCA18
prokMSA_id:35703 Verrucomicrobia CE59 
prokMSA_id:57441 Verrucomicrobia clone P. palm A 54 AJ441243
2.10.4.222 OTU 3 seqs
prokMSA_id:1598 clone BURTON-29. AF142847
prokMSA_id:53058 Verrucomicrobia MERTZ_0CM_215 
prokMSA_id:59753 clone OB3_171 
2.10.4.282 OTU 2 seqs
prokMSA_id:47433 Crater Lake CL500-85 
prokMSA_id:53214 verrucomicrobium DEV005 clone DEV005 AJ401105
2.10.4.288 OTU 3 seqs
prokMSA_id:1588 Prosthecobacter dejongeii str. FC1 ATCC 27091
prokMSA_id:22941 FukuS27 
prokMSA_id:91270 clone K2-30-31 AY344427
2.10.4.303 OTU 1 seq
prokMSA_id:36316 Verrucomicrobia MERTZ_0CM_339 
2.10.4.345 OTU 1 seq
prokMSA_id:43995 Verrucomicrobia MERTZ_0CM_111 
2.10.4.410 OTU 1 seq
prokMSA_id:1601 clone ACE-12
2.10.4.414 OTU 1 seq
prokMSA_id:1602 clone T62
2.10.4.430 OTU 1 seq
prokMSA_id:43412 Agricultural soil clone SC-I-26 
2.10.4.475 OTU 2 seqs
prokMSA_id:17307 verrucomicrobium DEV006 clone DEV006
prokMSA_id:19930 verrucomicrobium DEV179 clone DEV179
2.10.4.531 OTU 1 seq
prokMSA_id:46082 Verrucomicrobia Arctic96BD-2 
2.10.4.613 OTU 1 seq
prokMSA_id:55975 Verrucomicrobia clone P. palm C 85
2.10.4.661 OTU 1 seq
prokMSA_id:1592 Prosthecobacter fusiformis str. FC4 DSM 8960
2.10.4.671 OTU 1 seq
prokMSA_id:1593 Prosthecobacter vanneervenii str. FC2 ATCC 70019
2.10.4.868 OTU 1 seq
prokMSA_id:26283 verrucomicrobium DEV064 clone DEV064
2.10.4.871 OTU 2 seqs
prokMSA_id:79805 Verrucomicrobia clone BTM64 
prokMSA_id:79963 Verrucomicrobia clone BTM48 
2.10.4.9 OTU 1 seq
prokMSA_id:45457 verrucomicrobium DEV132 clone DEV132
2.10.5 ENVIRONMENTAL_CLONE_WCHD3-88 9 seqs
2.10.5.223 OTU 1 seq
prokMSA_id:1603 clone WCHD3-88
2.10.5.814 OTU 4 seqs
prokMSA_id:28723 FukuN43 AJ290079
prokMSA_id:45580 FukuN18 
prokMSA_id:73340 FukuN106 
prokMSA_id:97376 Verrucomicrobia clone NE06 AJ575731
2.10.5.888 OTU 4 seqs
prokMSA_id:29275 Candidatus Xiphinematobacter brevicolli 
prokMSA_id:37483 Candidatus Xiphinematobacter rivesi 
prokMSA_id:43374 Candidatus Xiphinematobacter americani 
prokMSA_id:65712 soil clone C1172 
2.10.6 ENVIRONMENTAL_CLONE_DA101_SUBGROUP 25 seqs
2.10.6.155 OTU 1 seq
prokMSA_id:1633 grassland soil sample approx. 15 mi. N of Pullman WA clone E
2.10.6.219 OTU 2 seqs
prokMSA_id:48886 verrucomicrobium DEV035 clone DEV035
prokMSA_id:52421 verrucomicrobium DEV009 clone DEV009
2.10.6.249 OTU 1 seq
prokMSA_id:82424 clone KD6-84 
2.10.6.352 OTU 8 seqs
prokMSA_id:44313 Metal-contaminated soil clone K20-28 
prokMSA_id:51214 Metal-contaminated soil clone K20-07 
prokMSA_id:61310 Verrucomicrobia clone SMS9.135WL AY043942
prokMSA_id:61313 Verrucomicrobia clone SMS9.23WL AY043944
prokMSA_id:61321 Verrucomicrobia clone NMS8.47WL 
prokMSA_id:61329 Verrucomicrobia clone NMW3.82WL AY043925
prokMSA_id:61490 Verrucomicrobia clone NOS7.72WL AY043729
prokMSA_id:65927 soil clone C0154 
2.10.6.394 OTU 1 seq
prokMSA_id:28009 verrucomicrobium DEV003 clone DEV003
2.10.6.417 OTU 1 seq
prokMSA_id:1605 clone C019
2.10.6.418 OTU 1 seq
prokMSA_id:1607 unnamed organism
2.10.6.420 OTU 1 seq
prokMSA_id:1608 unnamed organism
2.10.6.50 OTU 1 seq
prokMSA_id:43879 clone cvf122212 
2.10.6.565 OTU 1 seq
prokMSA_id:33602 Verrucomicrobia EV116 
2.10.6.701 OTU 1 seq
prokMSA_id:46832 Riz6E2 
2.10.6.792 OTU 1 seq
prokMSA_id:78274 Verrucomicrobia clone:Rs-P07
2.10.6.875 OTU 1 seq
prokMSA_id:1622 clone LD19
2.10.6.876 OTU 1 seq
prokMSA_id:1623 clone LD29
2.10.6.881 OTU 1 seq
prokMSA_id:1624 clone DA101
2.10.6.892 OTU 1 seq
prokMSA_id:1625 unnamed organism
2.10.6.911 OTU 1 seq
prokMSA_id:1631 clone RB35
2.11 ANR.THERMOTERRENUM_GROUP 49 seqs
2.11.1013 OTU 1 seq
prokMSA_id:1651 Aminobacterium mobilis str. ILE-3
2.11.117 OTU 1 seq
prokMSA_id:78257 clone:Rs-D89
2.11.248 OTU 4 seqs
prokMSA_id:1637 clone vadinCA02
prokMSA_id:1652 clone SYNE4. U46538
prokMSA_id:36934 clone TDC-S1:29 
prokMSA_id:81485 MTCE-T2 11H 
2.11.272 OTU 1 seq
prokMSA_id:78385 low G+C Gram-positive clone:Rs-C88
2.11.297 OTU 1 seq
prokMSA_id:1638 clone vadinHA73
2.11.353 OTU 1 seq
prokMSA_id:82669 low G+C Gram-positive clone PD-UASB-13 
2.11.359 OTU 1 seq
prokMSA_id:1658 clone TUG14
2.11.467 OTU 2 seqs
prokMSA_id:1653 clone OPB46
prokMSA_id:1654 clone OPB47
2.11.512 OTU 2 seqs
prokMSA_id:1634 Anaerobaculum thermoterrenum str. RWcit ACM 5076
prokMSA_id:42039 Anaerobaculum mobile strain NGA
2.11.60 OTU 1 seq
prokMSA_id:68344 Flexistipes sp. E3_33 E1 oral isolate 
2.11.601 OTU 2 seqs
prokMSA_id:50590 TA19 
prokMSA_id:81956 MTCE-T2 8D 
2.11.617 OTU 1 seq
prokMSA_id:72767 O11D9 
2.11.652 OTU 2 seqs
prokMSA_id:78484 clone JG30-KF-AS13 AJ536888
prokMSA_id:78862 clone JG30-KF-CM45
2.11.677 OTU 2 seqs
prokMSA_id:18164 tbr4-7 
prokMSA_id:71796 tbr1-2 
2.11.717 OTU 5 seqs
prokMSA_id:1635 Desulfothiovibrio peptidovorans str. G4207. U52817
prokMSA_id:70882 Dethiosulfovibrio russensis strain sr13 DSM 12577 AF234543
prokMSA_id:71455 Dethiosulfovibrio marinus strain sr12 DSM 12538 AF234542
prokMSA_id:72749 Dethiosulfovibrio acidaminovorans 
prokMSA_id:72998 Dethiosulfovibrio russensis strain WS 100 DSM 12537 
2.11.719 OTU 2 seqs
prokMSA_id:30163 Flexistipes-like sp. oral clone BA121 
prokMSA_id:86619 Synergistes sp. P4G_18 P1 
2.11.726 OTU 1 seq
prokMSA_id:1659 clone OPB72
2.11.740 OTU 1 seq
prokMSA_id:49883 clone p-4292-4Wa3 
2.11.808 OTU 11 seqs
prokMSA_id:1642 clone BH017
prokMSA_id:1643 clone D084
prokMSA_id:1644 clone D006
prokMSA_id:1645 clone W028
prokMSA_id:1646 clone W090
prokMSA_id:47490 Flexistipes-like sp. oral clone BB062 
prokMSA_id:68345 Firmicutes oral clone MCE3_120 E3 
prokMSA_id:68348 Firmicutes oral clone MCE7_5 E2 
prokMSA_id:71329 Flexistipes-like sp. oral clone BH007 
prokMSA_id:92501 Deferribacteres sp. oral clone JV023 AY349372
prokMSA_id:92848 Deferribacteres sp. oral clone JV001 AY349370
2.11.915 OTU 1 seq
prokMSA_id:1636 clone vadinBB02
2.11.961 OTU 1 seq
prokMSA_id:1641 clone BB48
2.11.969 OTU 2 seqs
prokMSA_id:66306 clone SHA-110
prokMSA_id:66918 clone SHA-1
2.11.974 OTU 1 seq
prokMSA_id:19846 clone:BCf4-02
2.11.978 OTU 1 seq
prokMSA_id:1649 Aminobacterium colombiense str. ALA-1
2.11.988 OTU 1 seq
prokMSA_id:38526 clone:BCf7-04
2.12 ENVIRONMENTAL_CLONE_OPB2_GROUP 6 seqs
2.12.1015 OTU 1 seq
prokMSA_id:17532 Banisveld landfill BVC56 
2.12.1077 OTU 1 seq
prokMSA_id:24187 clone Car90fb 
2.12.398 OTU 1 seq
prokMSA_id:1663 clone OPB2
2.12.408 OTU 1 seq
prokMSA_id:1664 str. BD3-9
2.12.628 OTU 1 seq
prokMSA_id:49231 clone GOUTB15 
2.12.774 OTU 1 seq
prokMSA_id:1665 str. BD4-9
2.13 NITROSPINA_SUBDIVISION 240 seqs
2.13.2 NITROSPINA_GROUP 12 seqs
2.13.2.1082 OTU 1 seq
prokMSA_id:43480 Car184f 
2.13.2.434 OTU 1 seq
prokMSA_id:47701 delta SA71 
2.13.2.444 OTU 1 seq
prokMSA_id:1673 Nitrospina gracilis str. Nb-211
2.13.2.447 OTU 1 seq
prokMSA_id:1675 str. BD4-10
2.13.2.580 OTU 1 seq
prokMSA_id:19976 delta Arctic97A-12 
2.13.2.594 OTU 2 seqs
prokMSA_id:24687 GR-296.I.52 clone GR-296.I.52
prokMSA_id:28255 delta GR-296.I.86 
2.13.2.769 OTU 1 seq
prokMSA_id:70140 firmicute isolate ikaite un-c23
2.13.2.785 OTU 3 seqs
prokMSA_id:28642 soil PBS-II-35 
prokMSA_id:30315 soil PBS-II-5 
prokMSA_id:36982 soil PBS-III-32 AJ390459
2.13.2.955 OTU 1 seq
prokMSA_id:27569 delta Arctic95C-6 
2.13.3 ENVIRONMENTAL_CLONE_OS_K_GROUP 3 seqs
2.13.3.453 OTU 1 seq
prokMSA_id:1678 Pele's Vents clone PVB_36
2.13.3.546 OTU 1 seq
prokMSA_id:20039 Ferribacter thermoautotrophicus clone KA2b 
2.13.3.703 OTU 1 seq
prokMSA_id:63800 candidate division WS3 clone LD1-PA13 
2.13.4 ENVIRONMENTAL_CLONE_OPB5_GROUP 54 seqs
2.13.4.1073 OTU 1 seq
prokMSA_id:41163 candidate division OP3 MERTZ_2CM_315 
2.13.4.118 OTU 1 seq
prokMSA_id:82144 clone KD1-1 
2.13.4.152 OTU 1 seq
prokMSA_id:53679 SHA-89 
2.13.4.164 OTU 2 seqs
prokMSA_id:25261 candidate division OP8 MERTZ_2CM_108 
prokMSA_id:51674 candidate division OP8 MERTZ_21CM_72 
2.13.4.165 OTU 3 seqs
prokMSA_id:1701 str. NKB18
prokMSA_id:19789 clone Car60fc 
prokMSA_id:45395 candidate division OP8 MERTZ_21CM_147 AF424331
2.13.4.23 OTU 3 seqs
prokMSA_id:1683 str. BD3-11
prokMSA_id:48834 strain NS1019
prokMSA_id:87958 planctomycete clone NS-61 AY283150
2.13.4.243 OTU 1 seq
prokMSA_id:52397 Candidate division OP2 clone OPB25 complete 
2.13.4.251 OTU 1 seq
prokMSA_id:34948 'KTK 36' 
2.13.4.3 OTU 12 seqs
prokMSA_id:1682 str. KOLL2a
prokMSA_id:19967 Anoxic biofilm clone Pla1-14 
prokMSA_id:21761 Anoxic biofilm clone Pla2-19 
prokMSA_id:29574 Anoxic biofilm clone Pla1-47 
prokMSA_id:30943 Anoxic biofilm clone Pla2-10 
prokMSA_id:32022 Anoxic biofilm clone Pla1-1 
prokMSA_id:38720 anoxic sludge KU2 
prokMSA_id:40152 Anoxic biofilm clone Pla1-44 
prokMSA_id:40184 Anoxic biofilm clone Pla1-48 
prokMSA_id:45461 Anoxic biofilm clone Pla2-48 
prokMSA_id:48522 Anoxic biofilm clone Pla2-22 
prokMSA_id:53683 Candidatus Kuenenia stuttgartiensis complete ; internal tran
2.13.4.325 OTU 1 seq
prokMSA_id:70520 C1_B017 
2.13.4.330 OTU 1 seq
prokMSA_id:60591 clone G58 
2.13.4.349 OTU 1 seq
prokMSA_id:32255 soil PBS-25 
2.13.4.379 OTU 1 seq
prokMSA_id:30457 candidate division OP8 MERTZ_2CM_344 
2.13.4.437 OTU 2 seqs
prokMSA_id:78103 Termite group 1 clone:Rs-D43
prokMSA_id:78190 Termite group 1 clone:Rs-M73
2.13.4.438 OTU 1 seq
prokMSA_id:1703 clone TG13
2.13.4.485 OTU 1 seq
prokMSA_id:80983 clone O1aA90 
2.13.4.492 OTU 1 seq
prokMSA_id:1681 str. clone koll11
2.13.4.499 OTU 1 seq
prokMSA_id:1688 clone KTK 32
2.13.4.505 OTU 1 seq
prokMSA_id:23667 CtaxTah-42 
2.13.4.506 OTU 1 seq
prokMSA_id:17055 clone KS89 
2.13.4.520 OTU 2 seqs
prokMSA_id:23626 candidate division OP8 MERTZ_21CM_186 
prokMSA_id:35212 candidate division OP8 MERTZ_2CM_346 
2.13.4.540 OTU 1 seq
prokMSA_id:70747 a2b031 
2.13.4.598 OTU 1 seq
prokMSA_id:33161 a2b010 
2.13.4.605 OTU 1 seq
prokMSA_id:36990 SBR2095 
2.13.4.63 OTU 1 seq
prokMSA_id:1705 clone WCHA1-39
2.13.4.65 OTU 1 seq
prokMSA_id:1707 clone WCHA1-89
2.13.4.662 OTU 2 seqs
prokMSA_id:1699 str. TIHP368-03
prokMSA_id:1700 str. TIHP368-11
2.13.4.69 OTU 1 seq
prokMSA_id:73076 clone SHA-124
2.13.4.722 OTU 1 seq
prokMSA_id:77986 Termite group 1 clone:Rs-H93
2.13.4.74 OTU 1 seq
prokMSA_id:1708 clone WFeA1-35
2.13.4.811 OTU 2 seqs
prokMSA_id:1680 clone OPB5
prokMSA_id:1684 clone OPB23
2.13.4.857 OTU 1 seq
prokMSA_id:77032 clone GuBH2-AD-75
2.13.4.930 OTU 1 seq
prokMSA_id:49483 candidate division OP8 MERTZ_21CM_86 
2.13.4.993 OTU 1 seq
prokMSA_id:77861 Termite group 1 clone:Rs-D95
2.13.5 ENVIRONMENTAL_CLONE_RB25_GROUP 16 seqs
2.13.5.105 OTU 1 seq
prokMSA_id:78237 Holophaga sp. clone Hyd24-44
2.13.5.232 OTU 1 seq
prokMSA_id:33996 clone KS63 
2.13.5.373 OTU 1 seq
prokMSA_id:45661 mle1-16 
2.13.5.391 OTU 1 seq
prokMSA_id:44715 MERTZ_2CM_263 
2.13.5.442 OTU 1 seq
prokMSA_id:73339 soil clone S0134 
2.13.5.452 OTU 1 seq
prokMSA_id:79044 Gram-positive isolate 5G01 
2.13.5.465 OTU 1 seq
prokMSA_id:1716 str. NKB17
2.13.5.468 OTU 1 seq
prokMSA_id:1717 clone Sva0515
2.13.5.508 OTU 1 seq
prokMSA_id:75917 Holophaga sp. clone JG37-AG-81
2.13.5.516 OTU 1 seq
prokMSA_id:76459 clone JG34-KF-153
2.13.5.536 OTU 1 seq
prokMSA_id:76461 clone GuBH2-AD-8
2.13.5.572 OTU 1 seq
prokMSA_id:63239 clone FW144 
2.13.5.591 OTU 1 seq
prokMSA_id:73910 Holophaga sp. oral clone CA002 
2.13.5.83 OTU 1 seq
prokMSA_id:46217 delta MERTZ_21CM_290 
2.13.5.97 OTU 1 seq
prokMSA_id:1711 str. BD7-11
2.13.5.98 OTU 1 seq
prokMSA_id:1712 clone TAYNAYA-25
2.13.6 ENVIRONMENTAL_CLONE_III1-8_GROUP 26 seqs
2.13.6.113 OTU 1 seq
prokMSA_id:1718 clone iii1-8
2.13.6.125 OTU 1 seq
prokMSA_id:1720 clone SJA-88
2.13.6.129 OTU 1 seq
prokMSA_id:1722 clone CLEAR-14
2.13.6.226 OTU 3 seqs
prokMSA_id:56349 soil clone S1146 
prokMSA_id:65637 soil clone S1145 
prokMSA_id:65891 soil clone C0200 
2.13.6.333 OTU 2 seqs
prokMSA_id:85300 clone D39 
prokMSA_id:86560 clone D131 
2.13.6.501 OTU 1 seq
prokMSA_id:1724 clone Sva0450
2.13.6.541 OTU 1 seq
prokMSA_id:76467 Holophaga sp. clone GuBH2-AG-47
2.13.6.588 OTU 2 seqs
prokMSA_id:1719 clone SJA-36. AJ009461
prokMSA_id:84306 clone LKC2.127-11 
2.13.6.704 OTU 1 seq
prokMSA_id:60180 clone TK29
2.13.6.773 OTU 12 seqs
prokMSA_id:1721 clone UC38fp
prokMSA_id:17007 sponge symbiont RSWS25 AF434953
prokMSA_id:17935 sponge symbiont RSWS7 AF434962
prokMSA_id:18334 sponge symbiont RSWS3 
prokMSA_id:19886 sponge symbiont RSWS9 AF434939
prokMSA_id:33722 sponge symbiont RSWS20 
prokMSA_id:40884 sponge symbiont RSWS17 
prokMSA_id:43895 sponge symbiont RSWS4 AF434959
prokMSA_id:48287 sponge symbiont RSWS2 AF434948
prokMSA_id:48870 sponge symbiont PAUC55 AF186440
prokMSA_id:51461 sponge symbiont PAUC54 AF186439
prokMSA_id:60768 sponge symbiont PAUC49 AF186436
2.13.6.95 OTU 1 seq
prokMSA_id:78123 delta clone Hyd24-32
2.13.7 ENVIRONMENTAL_CLONE_32-20_GROUP 3 seqs
2.13.7.151 OTU 1 seq
prokMSA_id:1728 clone 32-20
2.13.7.195 OTU 1 seq
prokMSA_id:1731 clone PENDANT-12
2.13.7.227 OTU 1 seq
prokMSA_id:75259 actinobacterium clone JG37-AG-36
2.13.8 HP.FOETIDA_GROUP 7 seqs
2.13.8.201 OTU 1 seq
prokMSA_id:1732 Holophaga foetida str. TMBS4 DSM 6591
2.13.8.204 OTU 1 seq
prokMSA_id:1733 clone SJA-87
2.13.8.208 OTU 1 seq
prokMSA_id:76766 Holophaga sp. clone GuBH2-AD-9
2.13.8.386 OTU 1 seq
prokMSA_id:1736 "Geothrix fermentans"
2.13.8.481 OTU 1 seq
prokMSA_id:62398 clone FTLM45 
2.13.8.482 OTU 1 seq
prokMSA_id:62399 delta clone FTLM205 
2.13.8.734 OTU 1 seq
prokMSA_id:55664 Acidobacterium group clone FTLM5 
2.13.9 ENVIRONMENTAL_CLONE_S027_GROUP 34 seqs
2.13.9.1024 OTU 1 seq
prokMSA_id:83178 rumen clone BS5 
2.13.9.1052 OTU 1 seq
prokMSA_id:41153 Pietermaritzburg Y14-5 
2.13.9.316 OTU 1 seq
prokMSA_id:1750 unnamed organism
2.13.9.327 OTU 1 seq
prokMSA_id:86097 clone FBP241 
2.13.9.401 OTU 1 seq
prokMSA_id:1769 clone P8
2.13.9.419 OTU 1 seq
prokMSA_id:16287 species clone iii3-16
2.13.9.435 OTU 1 seq
prokMSA_id:81698 Acidobacteria clone VC47 
2.13.9.523 OTU 6 seqs
prokMSA_id:16412 species clone 32-21
prokMSA_id:44004 17F9 
prokMSA_id:75727 Holophaga sp. clone JG37-AG-149
prokMSA_id:76452 Acidobacteriales clone GR13 
prokMSA_id:76977 Acidobacteriales clone GR14 
prokMSA_id:84875 Acidobacteria clone BB-2-C9F 
2.13.9.654 OTU 1 seq
prokMSA_id:1791 clone S027
2.13.9.659 OTU 1 seq
prokMSA_id:1793 unnamed organism
2.13.9.790 OTU 10 seqs
prokMSA_id:1749 clone 11-25
prokMSA_id:1767 clone LB3-92
prokMSA_id:1768 clone LB3-30
prokMSA_id:47841 sludge H44 
prokMSA_id:51292 sludge S6 
prokMSA_id:56714 Acidobacterium group clone SBR1013 
prokMSA_id:66557 clone SM1H07 
prokMSA_id:75650 earthworm intestine clone wi14 
prokMSA_id:86817 clone SM1H07 AY293402
prokMSA_id:88737 soil clone DS-249 AY289362
2.13.9.817 OTU 1 seq
prokMSA_id:1772 unnamed organism
2.13.9.87 OTU 1 seq
prokMSA_id:1776 clone 2951
2.13.9.872 OTU 1 seq
prokMSA_id:1784 unnamed organism
2.13.9.874 OTU 1 seq
prokMSA_id:1785 unnamed organism
2.13.9.884 OTU 1 seq
prokMSA_id:1783 clone S023
2.13.9.916 OTU 1 seq
prokMSA_id:1792 unnamed organism
2.13.9.929 OTU 1 seq
prokMSA_id:1794 unnamed organism
2.13.9.938 OTU 1 seq
prokMSA_id:1797 clone S111
2.13.9.948 OTU 1 seq
prokMSA_id:1798 unnamed organism
2.13.11 ENVIRONMENTAL_CLONE_MB1228_GROUP 43 seqs
2.13.11.1047 OTU 1 seq
prokMSA_id:1818 clone RB27
2.13.11.271 OTU 1 seq
prokMSA_id:1808 clone ii3-36
2.13.11.273 OTU 1 seq
prokMSA_id:1809 clone RFN4
2.13.11.306 OTU 1 seq
prokMSA_id:1810 unnamed organism
2.13.11.314 OTU 1 seq
prokMSA_id:1813 clone BPC015
2.13.11.315 OTU 1 seq
prokMSA_id:1814 clone BPC066
2.13.11.321 OTU 1 seq
prokMSA_id:1817 clone WCHA1-56
2.13.11.324 OTU 1 seq
prokMSA_id:1819 clone BPC102
2.13.11.347 OTU 1 seq
prokMSA_id:28670 sludge A22 
2.13.11.350 OTU 1 seq
prokMSA_id:85443 clone CCM15a 
2.13.11.363 OTU 1 seq
prokMSA_id:1821 unnamed organism
2.13.11.404 OTU 2 seqs
prokMSA_id:35478 species clone mb3429
prokMSA_id:89660 Acidobacteria clone 23k22 genomic AY281352
2.13.11.431 OTU 1 seq
prokMSA_id:59729 clone BB2_223 
2.13.11.502 OTU 1 seq
prokMSA_id:84610 clone CCM3a 
2.13.11.517 OTU 1 seq
prokMSA_id:46235 soil clone 576-2 
2.13.11.53 OTU 1 seq
prokMSA_id:31800 species clone iii1-15
2.13.11.622 OTU 1 seq
prokMSA_id:80248 candidate division SPAM clone P2-8G 
2.13.11.68 OTU 2 seqs
prokMSA_id:32598 soil PBS-III-9 
prokMSA_id:36561 soil PBS-III-27 
2.13.11.706 OTU 14 seqs
prokMSA_id:1807 clone DA008
prokMSA_id:1820 clone RB126. Z95716
prokMSA_id:28281 Agricultural soil clone SC-I-79 AJ252657
prokMSA_id:40242 Agricultural soil clone SC-I-21 AJ252624
prokMSA_id:43082 Agricultural soil clone SC-I-76 AJ252654
prokMSA_id:48016 species clone mb2431
prokMSA_id:74543 Agricultural soil clone SC-I-13 AJ252616
prokMSA_id:75545 Acidobacterium group clone JG36-TzT-99
prokMSA_id:75999 clone JG34-KF-113
prokMSA_id:76022 clone JG34-KF-337
prokMSA_id:76897 clone JG34-KF-257
prokMSA_id:78582 Holophaga sp. clone JG30a-KF-145
prokMSA_id:88876 soil clone DS-231 AY289378
prokMSA_id:93333 Acidobacteria clone JG36-GS-72 AJ582048
2.13.11.834 OTU 5 seqs
prokMSA_id:1815 clone mb1228
prokMSA_id:17667 species clone mb2424
prokMSA_id:18226 species clone iii3-7
prokMSA_id:20725 soil clone 192-2 
prokMSA_id:71241 mle1-25 
2.13.11.867 OTU 2 seqs
prokMSA_id:17129 sludge H3 
prokMSA_id:45334 sludge A34 
2.13.11.897 OTU 1 seq
prokMSA_id:84221 clone CCM8b 
2.13.11.91 OTU 1 seq
prokMSA_id:53652 clone BA059 complete 
2.13.12 ENVIRONMENTAL_CLONE_RB40_GROUP 42 seqs
2.13.12.100 OTU 1 seq
prokMSA_id:76114 clone JG36-TzT-10
2.13.12.1014 OTU 1 seq
prokMSA_id:52982 species clone ii3-15
2.13.12.102 OTU 1 seq
prokMSA_id:51476 species clone mb2430
2.13.12.1040 OTU 1 seq
prokMSA_id:46967 gold mine D15 
2.13.12.1046 OTU 1 seq
prokMSA_id:75514 clone JG34-KF-27
2.13.12.1049 OTU 1 seq
prokMSA_id:1828 clone C112
2.13.12.13 OTU 1 seq
prokMSA_id:76504 Acidobacterium group clone JG36-TzT-202
2.13.12.14 OTU 1 seq
prokMSA_id:30759 NWCu002 
2.13.12.176 OTU 1 seq
prokMSA_id:75775 Holophaga sp. clone JG37-AG-112
2.13.12.209 OTU 1 seq
prokMSA_id:76566 Holophaga sp. clone JG37-AG-29
2.13.12.267 OTU 1 seq
prokMSA_id:77958 Fibrobacteres clone OF20
2.13.12.274 OTU 1 seq
prokMSA_id:75044 Holophaga sp. clone JG37-AG-73
2.13.12.37 OTU 2 seqs
prokMSA_id:76544 Holophaga sp. clone JG37-AG-99
prokMSA_id:83207 Acidobacteria clone BAC-14A1 AY214904
2.13.12.384 OTU 1 seq
prokMSA_id:1829 unnamed organism
2.13.12.396 OTU 1 seq
prokMSA_id:1833 clone DA023
2.13.12.403 OTU 1 seq
prokMSA_id:1835 unnamed organism
2.13.12.415 OTU 1 seq
prokMSA_id:49683 clone Tc67 
2.13.12.450 OTU 1 seq
prokMSA_id:1834 unnamed organism
2.13.12.500 OTU 6 seqs
prokMSA_id:1827 clone C028
prokMSA_id:1854 clone RB24. Z95717
prokMSA_id:75589 Holophaga sp. clone JG37-AG-56
prokMSA_id:80372 Acidobacterium sp. clone CF7
prokMSA_id:82974 Acidobacteria clone WCB72 
prokMSA_id:83511 Acidobacteria clone WCB122 
2.13.12.548 OTU 1 seq
prokMSA_id:76925 Holophaga sp. clone GuBH2-AD-16
2.13.12.569 OTU 1 seq
prokMSA_id:23209 species clone ii3-12
2.13.12.582 OTU 1 seq
prokMSA_id:65464 clone a13114 
2.13.12.642 OTU 1 seq
prokMSA_id:22391 species clone 32-10
2.13.12.66 OTU 1 seq
prokMSA_id:75652 clone JG34-KF-135
2.13.12.674 OTU 2 seqs
prokMSA_id:71357 Lake Michigan sediment LMBA20 and genes 
prokMSA_id:73082 Lake Michigan sediment LMBA20 
2.13.12.877 OTU 1 seq
prokMSA_id:1851 clone P65
2.13.12.879 OTU 1 seq
prokMSA_id:1853 clone pB1-114
2.13.12.883 OTU 1 seq
prokMSA_id:1856 clone P16
2.13.12.89 OTU 1 seq
prokMSA_id:75679 Holophaga sp. clone JG37-AG-31
2.13.12.893 OTU 1 seq
prokMSA_id:1857 clone RB40
2.13.12.896 OTU 1 seq
prokMSA_id:1859 clone M19
2.13.12.964 OTU 1 seq
prokMSA_id:77004 Holophaga sp. clone JG37-AG-145
2.13.12.987 OTU 1 seq
prokMSA_id:76119 Acidobacterium group clone JG36-TzT-200
2.13.12.990 OTU 1 seq
prokMSA_id:28512 #0319-7F19 
2.13.12.994 OTU 1 seq
prokMSA_id:77025 Holophaga sp. clone JG37-AG-117
2.14 FLS.SINUSARABICI_ASSEMBLAGE 18 seqs
2.14.1 OTU 10 seqs
prokMSA_id:1867 str. UNSW2.6liv
prokMSA_id:1868 str. HRI1cae. AF059187
prokMSA_id:1869 str. HRI3liv
prokMSA_id:1871 str. UNSWRSp12. AF059190
prokMSA_id:1872 str. ASF 457
prokMSA_id:25453 clone p-2881-6C5 
prokMSA_id:95638 Mucispirillum schaedleri strain HRI I17 AY387670
prokMSA_id:95739 Mucispirillum schaedleri strain UNSW I23 AY387671
prokMSA_id:96944 Mucispirillum schaedleri strain HRI I12 AY387669
prokMSA_id:97295 Mucispirillum schaedleri strain ABHU I23 AY387668
2.14.770 OTU 2 seqs
prokMSA_id:1863 Deferribacter thermophilus str. BMA. U75602
prokMSA_id:70142 Deferribacter desulfuricans 
2.14.797 OTU 2 seqs
prokMSA_id:57548 Deferribacter sp. JR strain JR
prokMSA_id:57551 Deferribacter sp. DR strain DR
2.14.918 OTU 1 seq
prokMSA_id:1865 VC2.1 Bac9 complete 
2.14.945 OTU 1 seq
prokMSA_id:43329 Denitrovibrio acetophilus 
2.14.962 OTU 1 seq
prokMSA_id:1873 str. Lincoln Park 3
2.14.963 OTU 1 seq
prokMSA_id:1875 Chrysiogenes arsenatis str. BAL-1
2.15 FLEXIBACTER-CYTOPHAGA-BACTEROIDES 1820 seqs
2.15.1 BACTEROIDES_AND_CYTOPHAGA 1329 seqs
2.15.1.2 BACTEROIDES_GROUP 656 seqs
2.15.1.2.1 RIK.MICROFUSUS_SUBGROUP 32 seqs
2.15.1.2.1.5253 OTU 1 seq
prokMSA_id:80101 CFB group clone ML1218M-32 
2.15.1.2.1.5256 OTU 1 seq
prokMSA_id:77967 Bacteroidaceae clone:Rs-D38
2.15.1.2.1.5452 OTU 1 seq
prokMSA_id:21213 clone p-1628-c5 
2.15.1.2.1.5498 OTU 2 seqs
prokMSA_id:1880 clone RC9
prokMSA_id:1881 clone RF2
2.15.1.2.1.5502 OTU 2 seqs
prokMSA_id:22459 clone HuCA7
prokMSA_id:74420 adhufec73 
2.15.1.2.1.5532 OTU 1 seq
prokMSA_id:77751 CFB group clone:Rs-E47
2.15.1.2.1.5554 OTU 1 seq
prokMSA_id:52441 clone p-2158-s959-3 
2.15.1.2.1.5573 OTU 1 seq
prokMSA_id:78222 CFB group clone:Rs-D44
2.15.1.2.1.5779 OTU 1 seq
prokMSA_id:42845 clone RFLP 51E 
2.15.1.2.1.5851 OTU 1 seq
prokMSA_id:28923 equine intestinal sp. PW08 clone PW08
2.15.1.2.1.5889 OTU 1 seq
prokMSA_id:77794 Bacteroidaceae clone:Rs-F73
2.15.1.2.1.5908 OTU 1 seq
prokMSA_id:21326 clone TDC-S1:8 
2.15.1.2.1.5982 OTU 1 seq
prokMSA_id:70027 enrichment culture LET-13 clone II
2.15.1.2.1.6005 OTU 1 seq
prokMSA_id:31264 equine intestinal sp. DL13 clone DL13
2.15.1.2.1.6025 OTU 1 seq
prokMSA_id:38895 clone p-2202-s959-3 
2.15.1.2.1.6032 OTU 2 seqs
prokMSA_id:34085 clone HuCB23 AJ408997
prokMSA_id:61057 clone cadhufec17d09sav 
2.15.1.2.1.6097 OTU 1 seq
prokMSA_id:1878 clone vadinHA21
2.15.1.2.1.6096 OTU 1 seq
prokMSA_id:19478 equine intestinal clone:YT14
2.15.1.2.1.6116 OTU 1 seq
prokMSA_id:42791 equine intestinal clone:YT4
2.15.1.2.1.6134 OTU 1 seq
prokMSA_id:1882 clone RF15
2.15.1.2.1.6133 OTU 1 seq
prokMSA_id:20499 clone TDC-S5:22 
2.15.1.2.1.6135 OTU 1 seq
prokMSA_id:1883 clone RF28
2.15.1.2.1.6137 OTU 1 seq
prokMSA_id:1884 clone WCHB1-29
2.15.1.2.1.6138 OTU 1 seq
prokMSA_id:1885 clone vadinBC27
2.15.1.2.1.6139 OTU 1 seq
prokMSA_id:1886 clone JW12
2.15.1.2.1.6173 OTU 2 seqs
prokMSA_id:23709 Porphyromonas-like sp. oral clone DA064 
prokMSA_id:55622 Bacteroidales oral clone MCE7_120 E3 
2.15.1.2.1.6257 OTU 1 seq
prokMSA_id:26475 equine intestinal sp. DW02 clone DW02
2.15.1.2.1.6277 OTU 1 seq
prokMSA_id:28192 SHA-7 
2.15.1.2.4 CY.FERMENTANS_SUBGROUP 63 seqs
2.15.1.2.4.5353 OTU 1 seq
prokMSA_id:62390 Bacteroidetes clone FTLpost3 
2.15.1.2.4.5361 OTU 1 seq
prokMSA_id:27877 FukuN63 
2.15.1.2.4.5410 OTU 1 seq
prokMSA_id:66165 clone IIIB-28
2.15.1.2.4.5439 OTU 3 seqs
prokMSA_id:56341 Bacteroidetes clone ML635J-40 
prokMSA_id:79827 CFB group clone ML1228M-4 AF449769
prokMSA_id:80791 CFB group clone ML1228J-9 
2.15.1.2.4.5443 OTU 1 seq
prokMSA_id:27268 SHA-54 
2.15.1.2.4.5475 OTU 2 seqs
prokMSA_id:16567 SHA-25 
prokMSA_id:52484 SHA-38 
2.15.1.2.4.5501 OTU 1 seq
prokMSA_id:21755 Cytophagales clone CD4D9 
2.15.1.2.4.5511 OTU 1 seq
prokMSA_id:78165 Cytophagales clone Hyd-B2-1
2.15.1.2.4.5534 OTU 1 seq
prokMSA_id:49571 CFB group MERTZ_2CM_270 
2.15.1.2.4.5540 OTU 1 seq
prokMSA_id:49501 CFB group clone 8-1 
2.15.1.2.4.5544 OTU 1 seq
prokMSA_id:80197 clone KD3-17 
2.15.1.2.4.5568 OTU 1 seq
prokMSA_id:1899 clone WCHA2-47
2.15.1.2.4.5578 OTU 1 seq
prokMSA_id:76499 bacteroidetes clone S15A-MN91
2.15.1.2.4.5650 OTU 1 seq
prokMSA_id:49689 mRNA clone sipK20
2.15.1.2.4.5717 OTU 1 seq
prokMSA_id:1900 clone WCHB1-69
2.15.1.2.4.5782 OTU 1 seq
prokMSA_id:75791 Bacteroidetes Ko710 
2.15.1.2.4.5783 OTU 1 seq
prokMSA_id:62690 Bacteroidetes clone ML635J-15 
2.15.1.2.4.5802 OTU 1 seq
prokMSA_id:67037 clone SHA-94
2.15.1.2.4.5809 OTU 1 seq
prokMSA_id:1902 clone EKHO-19
2.15.1.2.4.5808 OTU 1 seq
prokMSA_id:1901 clone 1_60
2.15.1.2.4.5810 OTU 1 seq
prokMSA_id:1903 clone BURTON-42
2.15.1.2.4.5814 OTU 1 seq
prokMSA_id:1904 clone BURTON-5
2.15.1.2.4.5815 OTU 1 seq
prokMSA_id:41113 CFB group MERTZ_2CM_347 
2.15.1.2.4.5827 OTU 1 seq
prokMSA_id:1906 clone vadinHA17
2.15.1.2.4.5830 OTU 1 seq
prokMSA_id:1909 clone LD21
2.15.1.2.4.5850 OTU 2 seqs
prokMSA_id:1898 clone WCHA1-01
prokMSA_id:26565 clone RFLP 92E 
2.15.1.2.4.5854 OTU 1 seq
prokMSA_id:1911 Cytophaga sp. str. BD1-16
2.15.1.2.4.5855 OTU 1 seq
prokMSA_id:1912 Cytophaga sp. str. BD2-2
2.15.1.2.4.5856 OTU 1 seq
prokMSA_id:1914 Cytophaga Cytophaga Sva1038
2.15.1.2.4.5874 OTU 1 seq
prokMSA_id:57448 CFB group clone P. palm A 53
2.15.1.2.4.5880 OTU 1 seq
prokMSA_id:82140 Bacteroidetes ANT9285 
2.15.1.2.4.5892 OTU 2 seqs
prokMSA_id:33956 from anoxic bulk soil clone BSV13
prokMSA_id:40718 from anoxic bulk soil clone BSV73 AJ229217
2.15.1.2.4.5890 OTU 1 seq
prokMSA_id:82372 clone KD1-125 
2.15.1.2.4.5900 OTU 2 seqs
prokMSA_id:21344 isolate HOS19 Z88577
prokMSA_id:82792 Bacteroidetes clone 1A5 
2.15.1.2.4.5921 OTU 1 seq
prokMSA_id:34437 UASB_TL54 complete 
2.15.1.2.4.5945 OTU 1 seq
prokMSA_id:83262 Bacteroidetes clone LKC2.127-25 
2.15.1.2.4.5947 OTU 1 seq
prokMSA_id:57462 CFB group clone P. palm C/A 221
2.15.1.2.4.6038 OTU 1 seq
prokMSA_id:46205 CFB group MERTZ_21CM_238 
2.15.1.2.4.6046 OTU 1 seq
prokMSA_id:66167 clone IIIB-1
2.15.1.2.4.6069 OTU 1 seq
prokMSA_id:44257 E1-K9 
2.15.1.2.4.6078 OTU 1 seq
prokMSA_id:66189 clone IA-5
2.15.1.2.4.6101 OTU 1 seq
prokMSA_id:26698 Cytophagales CE54 
2.15.1.2.4.6114 OTU 1 seq
prokMSA_id:26752 CFB group MERTZ_21CM_75 
2.15.1.2.4.6155 OTU 1 seq
prokMSA_id:1895 clone Phenol-4
2.15.1.2.4.6156 OTU 2 seqs
prokMSA_id:21292 Cytophagales clone 26 
prokMSA_id:40351 Cytophagales clone 17 
2.15.1.2.4.6175 OTU 1 seq
prokMSA_id:1897 clone WCHA1-14
2.15.1.2.4.6176 OTU 2 seqs
prokMSA_id:42167 C1_B008 
prokMSA_id:77623 clone Hyd89-65
2.15.1.2.4.6181 OTU 1 seq
prokMSA_id:37588 CFB group MERTZ_2CM_232 
2.15.1.2.4.6187 OTU 3 seqs
prokMSA_id:20062 clone BA141 complete AF323769
prokMSA_id:40910 clone BA043 complete 
prokMSA_id:48692 clone BA029 complete AF323762
2.15.1.2.4.6226 OTU 1 seq
prokMSA_id:81077 clone KD3-136 
2.15.1.2.4.6233 OTU 1 seq
prokMSA_id:59562 Bacteroidetes sp. oral clone FX069 
2.15.1.2.4.6282 OTU 1 seq
prokMSA_id:41715 UASB_TL13 complete 
2.15.1.2.4.6317 OTU 1 seq
prokMSA_id:75260 bacteroidetes clone S15A-MN128
2.15.1.2.5 ML.AGAROVORANS_SUBGROUP 8 seqs
2.15.1.2.5.5471 OTU 1 seq
prokMSA_id:32729 clone P3IB-39 
2.15.1.2.5.5865 OTU 1 seq
prokMSA_id:1918 clone WCHB1-32
2.15.1.2.5.6278 OTU 6 seqs
prokMSA_id:1905 clone SRang1.29. AF047618
prokMSA_id:1907 str. PB90-2. AJ229236
prokMSA_id:1908 str. XB45. AJ229237
prokMSA_id:51120 from anoxic bulk soil clone BSV85 AJ229229
prokMSA_id:81805 clone KD2-16 
prokMSA_id:81865 clone KD2-19 AY218578
2.15.1.2.6 BAC.SPLANCHNICUS_SUBGROUP 3 seqs
2.15.1.2.6.5882 OTU 1 seq
prokMSA_id:1920 clone TAYNAYA-26
2.15.1.2.6.5883 OTU 1 seq
prokMSA_id:1921 clone SB-1
2.15.1.2.6.6076 OTU 1 seq
prokMSA_id:73753 adhufec291 
2.15.1.2.7 PPM.MACACAE_SUBGROUP 144 seqs
2.15.1.2.7.5295 OTU 1 seq
prokMSA_id:72093 clone p-987-s962-5 
2.15.1.2.7.5320 OTU 2 seqs
prokMSA_id:1953 Bacteroides distasonis ATCC 8503 . M86695
prokMSA_id:85501 clone ABLCf15 
2.15.1.2.7.5325 OTU 1 seq
prokMSA_id:41295 KF-Gitt2-47 
2.15.1.2.7.5343 OTU 1 seq
prokMSA_id:1941 Porphyromonas cangingivalis VPB 4874
2.15.1.2.7.5349 OTU 1 seq
prokMSA_id:78037 Bacteroidaceae clone:Rs-N74
2.15.1.2.7.5371 OTU 1 seq
prokMSA_id:1950 Porphyromonas cansulci VPB 4875
2.15.1.2.7.5374 OTU 1 seq
prokMSA_id:1952 Bacteroides merdae ATCC 43184
2.15.1.2.7.5373 OTU 1 seq
prokMSA_id:1951 Porphyromonas canoris VPB 4882
2.15.1.2.7.5377 OTU 1 seq
prokMSA_id:1955 clone RC16
2.15.1.2.7.5376 OTU 1 seq
prokMSA_id:1954 clone RC2
2.15.1.2.7.5379 OTU 1 seq
prokMSA_id:1957 clone RF36
2.15.1.2.7.5392 OTU 1 seq
prokMSA_id:1958 clone RFN84
2.15.1.2.7.5393 OTU 1 seq
prokMSA_id:1959 clone RFN96
2.15.1.2.7.5411 OTU 1 seq
prokMSA_id:1960 clone adhufec77.25
2.15.1.2.7.5413 OTU 1 seq
prokMSA_id:1963 clone BB23
2.15.1.2.7.5415 OTU 1 seq
prokMSA_id:1969 clone RFN41
2.15.1.2.7.5414 OTU 1 seq
prokMSA_id:1966 str. CDC Group DF-3
2.15.1.2.7.5429 OTU 1 seq
prokMSA_id:28832 clone RFLP 2E 
2.15.1.2.7.5467 OTU 4 seqs
prokMSA_id:1942 clone RFN47. AB009203
prokMSA_id:1968 clone RFN12
prokMSA_id:1970 clone RFN43
prokMSA_id:1972 clone RFN86. AB009233
2.15.1.2.7.5469 OTU 1 seq
prokMSA_id:1976 clone vadinHA28
2.15.1.2.7.5468 OTU 1 seq
prokMSA_id:1975 clone vadinHA54
2.15.1.2.7.5496 OTU 1 seq
prokMSA_id:32176 equine intestinal sp. PL40 clone PL40
2.15.1.2.7.5508 OTU 1 seq
prokMSA_id:26171 equine intestinal YT7 
2.15.1.2.7.5516 OTU 2 seqs
prokMSA_id:18150 equine intestinal sp. CL14 clone CL14
prokMSA_id:28315 equine intestinal sp. ML14 clone ML14
2.15.1.2.7.5530 OTU 1 seq
prokMSA_id:74492 Bacteroidetes clone BIci17
2.15.1.2.7.5537 OTU 2 seqs
prokMSA_id:31170 clone p-2177-s959-3 
prokMSA_id:35721 clone p-816-a5 
2.15.1.2.7.5546 OTU 1 seq
prokMSA_id:49573 TCE5 
2.15.1.2.7.5557 OTU 1 seq
prokMSA_id:51927 Bacteroides cf. forsythus oral clone BU063 
2.15.1.2.7.5631 OTU 1 seq
prokMSA_id:44678 Bacteroides sp. clone:BCf1-03
2.15.1.2.7.5634 OTU 1 seq
prokMSA_id:86429 rumen clone BE25 
2.15.1.2.7.5652 OTU 1 seq
prokMSA_id:78288 Bacteroidaceae clone:Rs-D29
2.15.1.2.7.5664 OTU 1 seq
prokMSA_id:78297 Bacteroidaceae clone:Rs-E83
2.15.1.2.7.5666 OTU 1 seq
prokMSA_id:30407 equine intestinal sp. ML19 clone ML19
2.15.1.2.7.5676 OTU 1 seq
prokMSA_id:37920 equine intestinal sp. CL08 clone CL08
2.15.1.2.7.5680 OTU 1 seq
prokMSA_id:82191 Bacteroidaceae clone: Rs-106
2.15.1.2.7.5696 OTU 1 seq
prokMSA_id:85590 rumen clone BE26 
2.15.1.2.7.5713 OTU 10 seqs
prokMSA_id:1931 Porphyromonas catoniae ATCC 51270 . X82823
prokMSA_id:18314 Porphyromonas sp. clone DS033 
prokMSA_id:28623 Porphyromonas sp. oral clone BS045 
prokMSA_id:30493 Porphyromonas sp. oral clone EP003 
prokMSA_id:30507 Porphyromonas sp. oral clone BS077 
prokMSA_id:72237 Porphyromonas sp. oral clone CW034 
prokMSA_id:72284 Porphyromonas sp. oral clone BR037 
prokMSA_id:72586 Porphyromonas sp. oral clone DP023 
prokMSA_id:74406 Porphyromonas sp. oral clone AW032 
prokMSA_id:94489 CFB group clone S15B-MN34 AJ583190
2.15.1.2.7.5719 OTU 1 seq
prokMSA_id:41939 mRNA clone sipK57
2.15.1.2.7.5732 OTU 3 seqs
prokMSA_id:1928 Bacteroides sp. str. sp4
prokMSA_id:1973 Bacteroides sp. str. sp14
prokMSA_id:66177 clone IIB-29
2.15.1.2.7.5752 OTU 2 seqs
prokMSA_id:1943 clone RFN67
prokMSA_id:1971 clone RFN73
2.15.1.2.7.5761 OTU 1 seq
prokMSA_id:46885 Bacteroides-like sp. oral clone AU126 
2.15.1.2.7.5771 OTU 1 seq
prokMSA_id:77581 CFB group clone:APe2_39
2.15.1.2.7.5781 OTU 1 seq
prokMSA_id:27468 equine intestinal sp. MW16 clone MW16
2.15.1.2.7.5789 OTU 3 seqs
prokMSA_id:84120 rumen clone BE29 
prokMSA_id:84938 rumen clone BF25 
prokMSA_id:84953 rumen clone BE18 
2.15.1.2.7.5791 OTU 1 seq
prokMSA_id:43915 Bacteroides sp. oral clone BU045 
2.15.1.2.7.5800 OTU 7 seqs
prokMSA_id:1938 str. PUS3.23
prokMSA_id:28004 Porphyromonas sp. oral clone F016 
prokMSA_id:29149 Porphyromonas sp. oral clone AJ002 
prokMSA_id:51233 Porphyromonas sp. oral clone BB134 AY005068
prokMSA_id:84092 Porphyromonas endodontalis ATCC 35406 
prokMSA_id:84660 Porphyromonas sp. oral clone P4GB_100 P2 
prokMSA_id:84799 Porphyromonas sp. oral clone P2PB_52 P1 
2.15.1.2.7.5804 OTU 1 seq
prokMSA_id:40523 clone p-262-o5 
2.15.1.2.7.5806 OTU 2 seqs
prokMSA_id:74495 adhufec55 
prokMSA_id:81083 Bacteroides merdae 
2.15.1.2.7.5817 OTU 1 seq
prokMSA_id:77707 Bacteroidaceae clone:Rs-N56
2.15.1.2.7.5852 OTU 1 seq
prokMSA_id:38316 clone:BCf7-02
2.15.1.2.7.5887 OTU 1 seq
prokMSA_id:1923 clone RF17
2.15.1.2.7.5907 OTU 6 seqs
prokMSA_id:1924 clone RFN37
prokMSA_id:1925 clone RFN50
prokMSA_id:1926 clone RFN6
prokMSA_id:1927 clone RFN79
prokMSA_id:17505 fiber-attaching rumen clone:SY26
prokMSA_id:84958 rumen clone BE36 
2.15.1.2.7.5932 OTU 1 seq
prokMSA_id:77773 Bacteroidaceae clone:Rs-P41
2.15.1.2.7.5943 OTU 32 seqs
prokMSA_id:1948 Porphyromonas gingivalis ATCC 33277 . L16492
prokMSA_id:1962 Porphyromonas gingivalis DSM 20709
prokMSA_id:17881 Porphyromonas gingivalis 
prokMSA_id:18895 Porphyromonas gingivalis strain 27-PGI AF414817
prokMSA_id:26186 Porphyromonas gulae strain Manga 1.41 AF285869
prokMSA_id:31120 Porphyromonas gingivalis strain 30-PGI AF414820
prokMSA_id:32807 Porphyromonas gulae strain chien 4.2 
prokMSA_id:33231 Porphyromonas gingivalis strain 26-PGI AF414816
prokMSA_id:33300 Porphyromonas gingivalis strain ATCC 33277 
prokMSA_id:33338 Porphyromonas gingivalis strain:SUNY1021
prokMSA_id:34895 Porphyromonas gingivalis strain 1-PGI AF414810
prokMSA_id:35758 Porphyromonas gingivalis strain 40-PGI AF414813
prokMSA_id:35989 Porphyromonas gulae 
prokMSA_id:36451 Porphyromonas gingivalis strain 25-PGI AF414815
prokMSA_id:39994 Porphyromonas gulae strain ours 3.1 
prokMSA_id:42789 Porphyromonas gingivalis strain 28-PGI 
prokMSA_id:42871 Porphyromonas gulae 
prokMSA_id:42887 Porphyromonas gingivalis strain 2-PGI 
prokMSA_id:44500 Porphyromonas gingivalis strain 42-PGI 
prokMSA_id:46900 Porphyromonas gingivalis strain:A7A1-28
prokMSA_id:47786 Porphyromonas gulae strain B 243 
prokMSA_id:49110 Porphyromonas gingivalis strain:W83
prokMSA_id:49606 Porphyromonas gingivalis AF285870
prokMSA_id:53253 Porphyromonas gingivalis strain:ATCC33277
prokMSA_id:71486 Porphyromonas gingivalis strain 29-PGI AF414819
prokMSA_id:71638 Porphyromonas gulae strain chat 3.1 
prokMSA_id:74161 Porphyromonas gingivalis strain 3-PGI AF414812
prokMSA_id:93277 Porphyromonas gingivalis W83 section 8 of 8 of the complete 
prokMSA_id:93513 Porphyromonas gingivalis W83 complete genome NC_002950
prokMSA_id:93631 Porphyromonas gingivalis W83 section 1 of 8 of the complete 
prokMSA_id:93824 Porphyromonas gingivalis W83 section 5 of 8 of the complete 
prokMSA_id:93948 Porphyromonas gingivalis W83 section 6 of 8 of the complete 
2.15.1.2.7.5952 OTU 1 seq
prokMSA_id:28974 clone p-1862-c3 
2.15.1.2.7.5961 OTU 2 seqs
prokMSA_id:55494 clone IA-16
prokMSA_id:79914 Bacteroidetes clone GalB60 
2.15.1.2.7.5963 OTU 2 seqs
prokMSA_id:1929 Bacteroides ASF519 str. ASF 519
prokMSA_id:69900 mpn-isolate group 6 
2.15.1.2.7.5990 OTU 1 seq
prokMSA_id:19082 clone:BCf5-08
2.15.1.2.7.5998 OTU 1 seq
prokMSA_id:84869 rumen clone BS9 
2.15.1.2.7.6009 OTU 1 seq
prokMSA_id:77928 Bacteroidaceae clone:Rs-J02
2.15.1.2.7.6022 OTU 1 seq
prokMSA_id:45315 clone L7-16
2.15.1.2.7.6088 OTU 1 seq
prokMSA_id:31626 Bacteroidales str. WB4 
2.15.1.2.7.6117 OTU 1 seq
prokMSA_id:41054 clone RFLP 40E 
2.15.1.2.7.6214 OTU 12 seqs
prokMSA_id:1922 Bacteroides forsythus FDC 331
prokMSA_id:22635 Bacteroides forsythus strain:Sai5
prokMSA_id:34893 Bacteroides forsythus strain:KM3
prokMSA_id:36831 Bacteroides forsythus strain:FJ1
prokMSA_id:38366 Bacteroides forsythus strain:HG3
prokMSA_id:38992 Bacteroides forsythus strain:Ko3
prokMSA_id:40709 Bacteroides forsythus strain:G9
prokMSA_id:40924 Bacteroides forsythus strain:KS16 AB053944
prokMSA_id:46214 Bacteroides forsythus strain:L7
prokMSA_id:46574 Bacteroides forsythus strain:TR6 AB053947
prokMSA_id:49167 Bacteroides forsythus strain:HA3
prokMSA_id:51467 Bacteroides forsythus strain:ATCC43037
2.15.1.2.7.6263 OTU 1 seq
prokMSA_id:84193 rumen clone BE20 
2.15.1.2.7.6262 OTU 1 seq
prokMSA_id:40059 ckncm156-F1M.2H5 
2.15.1.2.7.6280 OTU 1 seq
prokMSA_id:36893 AA17 
2.15.1.2.7.6288 OTU 1 seq
prokMSA_id:26510 ckncm163-F3M.1B4 
2.15.1.2.8 BAC.FRAGILIS_SUBGROUP 106 seqs
2.15.1.2.8.5264 OTU 1 seq
prokMSA_id:43829 clone L7-17
2.15.1.2.8.5275 OTU 1 seq
prokMSA_id:73683 Bacteroides sp. 253c 
2.15.1.2.8.5285 OTU 1 seq
prokMSA_id:2030 Bacteroides stercoris ATCC 43183
2.15.1.2.8.5299 OTU 1 seq
prokMSA_id:2033 clone adhufec12.25
2.15.1.2.8.5298 OTU 1 seq
prokMSA_id:29526 TAYNAYA-27 
2.15.1.2.8.5303 OTU 1 seq
prokMSA_id:2036 clone RFN2
2.15.1.2.8.5302 OTU 1 seq
prokMSA_id:2034 clone JW16
2.15.1.2.8.5306 OTU 1 seq
prokMSA_id:2037 clone RFN46
2.15.1.2.8.5326 OTU 2 seqs
prokMSA_id:2043 clone adhufec26.25
prokMSA_id:24383 adhufec151 AF132239
2.15.1.2.8.5329 OTU 1 seq
prokMSA_id:2045 Bacteroides acidofaciens
2.15.1.2.8.5360 OTU 1 seq
prokMSA_id:73937 clone p-1273-a5 
2.15.1.2.8.5390 OTU 1 seq
prokMSA_id:24616 fiber-attaching rumen clone:SY30
2.15.1.2.8.5424 OTU 2 seqs
prokMSA_id:2035 Bacteroides eggerthii NCTC 11185
prokMSA_id:70488 Bacteroides eggerthii 
2.15.1.2.8.5425 OTU 1 seq
prokMSA_id:37022 Bacteroides ovatus 
2.15.1.2.8.5441 OTU 3 seqs
prokMSA_id:33268 clone HuCB3
prokMSA_id:45060 clone HuCA9
prokMSA_id:52020 clone HuCA36
2.15.1.2.8.5450 OTU 2 seqs
prokMSA_id:1988 Bacteroides sp. str. BV-1
prokMSA_id:50342 clone HuCA21
2.15.1.2.8.5454 OTU 5 seqs
prokMSA_id:25154 Bacteroidetes clone BIfciii40 AJ318126
prokMSA_id:47890 Dysgonomonas gadei strain 1145589 Y18530
prokMSA_id:78080 Bacteroidaceae clone:Rs-M21
prokMSA_id:81335 Bacteroidaceae clone: Rs-008
prokMSA_id:91816 Dysgonomonas shahii strain CCUG 43457 AJ319867
2.15.1.2.8.5474 OTU 3 seqs
prokMSA_id:1992 Bacteroides acidofaciens str. A24
prokMSA_id:1994 Bacteroides acidofaciens str. A31
prokMSA_id:1998 Bacteroides acidofaciens str. A43
2.15.1.2.8.5489 OTU 2 seqs
prokMSA_id:1986 Bacteroides caccae ATCC 43185
prokMSA_id:74577 adhufec51 AF132273
2.15.1.2.8.5510 OTU 1 seq
prokMSA_id:77508 26-4b2 
2.15.1.2.8.5551 OTU 4 seqs
prokMSA_id:2020 Bacteroides uniformis ATCC 8492 . L16486
prokMSA_id:2024 Bacteroides AR20 str. AR20. AF139524
prokMSA_id:28973 adhufec153 
prokMSA_id:47157 Bacteroides uniformis 
2.15.1.2.8.5556 OTU 1 seq
prokMSA_id:34809 rumen 4C0d-8 
2.15.1.2.8.5577 OTU 2 seqs
prokMSA_id:41973 clone p-1018-a5 
prokMSA_id:52212 clone p-1091-a5 
2.15.1.2.8.5593 OTU 1 seq
prokMSA_id:79483 clone M2 
2.15.1.2.8.5596 OTU 3 seqs
prokMSA_id:30861 Bacteroides sp. 139 
prokMSA_id:46819 Swine fecal FPC111 
prokMSA_id:89392 Bacteroides sp. 111 AJ514255
2.15.1.2.8.5621 OTU 1 seq
prokMSA_id:82138 MTCE-T2 3G 
2.15.1.2.8.5627 OTU 1 seq
prokMSA_id:43091 adhufec303 
2.15.1.2.8.5651 OTU 1 seq
prokMSA_id:78342 Bacteroidaceae clone:Rs-F14
2.15.1.2.8.5698 OTU 1 seq
prokMSA_id:2044 clone 12-129
2.15.1.2.8.5759 OTU 1 seq
prokMSA_id:52362 E1-K8 
2.15.1.2.8.5768 OTU 1 seq
prokMSA_id:73517 Prevotella sp. oral clone BU035 
2.15.1.2.8.5823 OTU 1 seq
prokMSA_id:26888 clone p-218-o5 
2.15.1.2.8.5837 OTU 1 seq
prokMSA_id:71331 adhufec355 
2.15.1.2.8.5844 OTU 6 seqs
prokMSA_id:1990 Bacteroides acidofaciens
prokMSA_id:1991 Bacteroides acidofaciens str. A1
prokMSA_id:1993 Bacteroides acidofaciens str. A29
prokMSA_id:1995 Bacteroides acidofaciens str. A32
prokMSA_id:1996 Bacteroides acidofaciens str. A37
prokMSA_id:1997 Bacteroides acidofaciens str. A40
2.15.1.2.8.5885 OTU 1 seq
prokMSA_id:25165 clone HuCA34
2.15.1.2.8.5897 OTU 1 seq
prokMSA_id:45921 clone p-240-o5 
2.15.1.2.8.5950 OTU 1 seq
prokMSA_id:44290 human fecal HF10 
2.15.1.2.8.5979 OTU 22 seqs
prokMSA_id:2000 Bacteroides fragilis
prokMSA_id:2001 Bacteroides fragilis ATCC 25285
prokMSA_id:2003 Bacteroides fragilis ATCC 25285
prokMSA_id:2004 Bacteroides fragilis str. Bfr189. X83944
prokMSA_id:2005 Bacteroides fragilis str. Bfr901
prokMSA_id:2006 Bacteroides fragilis str. Bfr920. X83946
prokMSA_id:2007 Bacteroides fragilis str. KSB1486. X83947
prokMSA_id:2008 Bacteroides fragilis str. 2393
prokMSA_id:2009 Bacteroides fragilis str. 4117
prokMSA_id:2010 Bacteroides fragilis str. 4225
prokMSA_id:2011 Bacteroides fragilis str. AIP 638
prokMSA_id:2012 Bacteroides fragilis str. 790
prokMSA_id:2013 Bacteroides fragilis str. 2991
prokMSA_id:2014 Bacteroides fragilis str. 6791. X83939
prokMSA_id:2015 Bacteroides fragilis str. 12491. X83940
prokMSA_id:2016 Bacteroides fragilis str. TAL3636
prokMSA_id:2017 Bacteroides fragilis str. B119
prokMSA_id:2018 Bacteroides fragilis str. Bfr81. X83943
prokMSA_id:2019 Bacteroides CIP103040 str. 040 CIP 103
prokMSA_id:51984 clone HuCA33
prokMSA_id:52643 Bacteroides fragilis 
prokMSA_id:71002 mpn-isolate group 7 
2.15.1.2.8.5980 OTU 1 seq
prokMSA_id:48647 str. 31285 
2.15.1.2.8.6012 OTU 1 seq
prokMSA_id:25137 clone L11-6
2.15.1.2.8.6060 OTU 2 seqs
prokMSA_id:47293 Bacteroidetes clone BIsii27 AJ318179
prokMSA_id:73751 Bacteroides sp. 265d 
2.15.1.2.8.6064 OTU 13 seqs
prokMSA_id:1982 Bacteroides thetaiotaomicron M58763
prokMSA_id:1983 Bacteroides AR29 str. AR29
prokMSA_id:46476 Bacteroides thetaiotaomicron 
prokMSA_id:57995 clone:G-56 AB094183
prokMSA_id:71812 clone cadhufec17h05sav AF530346
prokMSA_id:72562 adhufec23 AF132251
prokMSA_id:82797 Bacteroides sp. 'Smarlab BioMol-2301151' 
prokMSA_id:83324 Bacteroides thetaiotaomicron VPI-5482 section 6 of 21 of the
prokMSA_id:83868 Bacteroides thetaiotaomicron VPI-5482 section 17 of 21 of th
prokMSA_id:84161 Bacteroides thetaiotaomicron VPI-5482 section 12 of 21 of th
prokMSA_id:85849 Bacteroides thetaiotaomicron VPI-5482 section 8 of 21 of the
prokMSA_id:86008 Bacteroides thetaiotaomicron VPI-5482 section 11 of 21 of th
prokMSA_id:86458 Bacteroides thetaiotaomicron VPI-5482 complete genome NC_004
2.15.1.2.8.6066 OTU 1 seq
prokMSA_id:83456 Prevotellaceae P4P_62 P1 
2.15.1.2.8.6204 OTU 1 seq
prokMSA_id:50289 equine intestinal sp. PW13 clone PW13
2.15.1.2.8.6227 OTU 1 seq
prokMSA_id:2002 clone BURTON-6
2.15.1.2.8.6307 OTU 1 seq
prokMSA_id:49461 clone p-4305-4Wa3 
2.15.1.2.8.6309 OTU 2 seqs
prokMSA_id:44276 adhufec367 
prokMSA_id:60914 84634 
2.15.1.2.8.6326 OTU 1 seq
prokMSA_id:72466 Bacteroides sp. 0103 800 strain 0103 800
2.15.1.2.9 PRV.TANNERAE_SUBGROUP 10 seqs
2.15.1.2.9.5684 OTU 1 seq
prokMSA_id:38227 E1-K15 
2.15.1.2.9.5718 OTU 9 seqs
prokMSA_id:2046 Prevotella tannerae ATCC 51259
prokMSA_id:2047 str. PUS3.42
prokMSA_id:28563 Prevotella tannerae strain 29-1 complete 
prokMSA_id:30384 Prevotella tannerae strain 131-9-1 complete 
prokMSA_id:35980 Prevotella tannerae strain 83-10-2 complete 
prokMSA_id:37055 Prevotella tannerae strain 93-1-2 complete 
prokMSA_id:38368 Prevotella tannerae strain 89-9-1 complete 
prokMSA_id:63115 clone MB-A2-118 
prokMSA_id:72923 E1-K12 
2.15.1.2.10 PRV.BRYANTII_SUBGROUP 16 seqs
2.15.1.2.10.5338 OTU 1 seq
prokMSA_id:47181 clone p-1005-a5 
2.15.1.2.10.5403 OTU 7 seqs
prokMSA_id:2048 Prevotella bryantii str. B14 DSM 11371 . AJ006457
prokMSA_id:2049 clone RF23
prokMSA_id:2050 clone 12-4
prokMSA_id:23685 rumen 5C3d-4 
prokMSA_id:31856 Prevotella bryantii AF396925
prokMSA_id:39885 rumen 3C3d-16 
prokMSA_id:52763 rumen 5C3d-8 
2.15.1.2.10.5646 OTU 1 seq
prokMSA_id:49682 clone p-219-o5 
2.15.1.2.10.5972 OTU 2 seqs
prokMSA_id:2051 clone 12-16
prokMSA_id:2052 clone 12-102
2.15.1.2.10.6118 OTU 1 seq
prokMSA_id:2054 clone 30-13
2.15.1.2.10.6119 OTU 1 seq
prokMSA_id:2055 clone 30-14
2.15.1.2.10.6120 OTU 1 seq
prokMSA_id:2056 clone 30-21
2.15.1.2.10.6180 OTU 1 seq
prokMSA_id:42406 clone p-185-o5 
2.15.1.2.10.6232 OTU 1 seq
prokMSA_id:31029 equine intestinal sp. CL22 clone CL22
2.15.1.2.11 PRV.RUMINICOLA_SUBGROUP 148 seqs
2.15.1.2.11.5245 OTU 1 seq
prokMSA_id:2164 clone 30-38
2.15.1.2.11.5246 OTU 1 seq
prokMSA_id:2167 clone 30-46
2.15.1.2.11.5259 OTU 3 seqs
prokMSA_id:2065 clone RCP19
prokMSA_id:2096 clone 12-66
prokMSA_id:18443 rumen 3C3d-1 
2.15.1.2.11.5262 OTU 1 seq
prokMSA_id:70217 mpn-isolate group 2 
2.15.1.2.11.5290 OTU 1 seq
prokMSA_id:2170 Prevotella aff. ruminicola Tc2-24 str. Tc2-24
2.15.1.2.11.5323 OTU 1 seq
prokMSA_id:16433 fiber-attaching rumen clone:SY29
2.15.1.2.11.5386 OTU 3 seqs
prokMSA_id:2136 clone 12-1. AF018452
prokMSA_id:2162 clone 30-34
prokMSA_id:2163 clone 30-35
2.15.1.2.11.5398 OTU 24 seqs
prokMSA_id:2064 clone RC40
prokMSA_id:2067 clone RF19
prokMSA_id:2070 clone RF40
prokMSA_id:2071 Prevotella ruminicola str. PF20-3
prokMSA_id:2072 clone RFN21
prokMSA_id:2078 clone RFN68
prokMSA_id:2079 clone RFN78
prokMSA_id:2084 Prevotella sp. str. sp24
prokMSA_id:2085 Prevotella sp. str. sp34
prokMSA_id:2086 Prevotella sp. str. sp28
prokMSA_id:2087 Prevotella sp. str. sp158
prokMSA_id:2088 Prevotella sp. str. sp20
prokMSA_id:2089 Prevotella ruminicola str. T31
prokMSA_id:2090 Prevotella ruminicola subsp. ruminicola
prokMSA_id:41037 rumen 4C3d-18 
prokMSA_id:49294 rumen 4C3d-1 
prokMSA_id:52673 rumen 4C3d-15 
prokMSA_id:82806 rumen clone BF37 
prokMSA_id:83302 rumen clone BE27 
prokMSA_id:84681 rumen clone BF19 
prokMSA_id:85456 rumen clone BE3 
prokMSA_id:85968 rumen clone BF21 
prokMSA_id:86283 rumen clone BE11 
prokMSA_id:86611 rumen clone BF15 
2.15.1.2.11.5422 OTU 2 seqs
prokMSA_id:2128 clone RFN9
prokMSA_id:83419 rumen clone BF17 
2.15.1.2.11.5437 OTU 2 seqs
prokMSA_id:82967 rumen clone BF36 
prokMSA_id:86520 rumen clone BE1 
2.15.1.2.11.5528 OTU 2 seqs
prokMSA_id:2127 clone RFN76
prokMSA_id:2130 clone RFN92
2.15.1.2.11.5539 OTU 1 seq
prokMSA_id:2081 clone RFN90
2.15.1.2.11.5603 OTU 2 seqs
prokMSA_id:2066 clone RC29
prokMSA_id:2075 clone RFN36
2.15.1.2.11.5608 OTU 2 seqs
prokMSA_id:2146 clone 12-118
prokMSA_id:2165 clone 30-39
2.15.1.2.11.5656 OTU 1 seq
prokMSA_id:83963 rumen clone BE19 
2.15.1.2.11.5668 OTU 1 seq
prokMSA_id:84919 rumen clone BE4 
2.15.1.2.11.5679 OTU 1 seq
prokMSA_id:2103 clone 30-15
2.15.1.2.11.5686 OTU 2 seqs
prokMSA_id:2068 clone RF25
prokMSA_id:84308 rumen clone BE35 
2.15.1.2.11.5691 OTU 1 seq
prokMSA_id:2105 clone 30-19
2.15.1.2.11.5692 OTU 1 seq
prokMSA_id:2107 clone 30-37
2.15.1.2.11.5693 OTU 1 seq
prokMSA_id:2108 clone 30-43
2.15.1.2.11.5694 OTU 1 seq
prokMSA_id:2109 clone 30-44
2.15.1.2.11.5700 OTU 1 seq
prokMSA_id:82767 rumen clone BF38 
2.15.1.2.11.5709 OTU 1 seq
prokMSA_id:2110 clone 30-45
2.15.1.2.11.5711 OTU 1 seq
prokMSA_id:2113 clone RC14
2.15.1.2.11.5710 OTU 1 seq
prokMSA_id:2112 clone RC11
2.15.1.2.11.5716 OTU 2 seqs
prokMSA_id:84248 rumen clone BF40 
prokMSA_id:86050 rumen clone BE23 
2.15.1.2.11.5721 OTU 1 seq
prokMSA_id:2115 clone RC24
2.15.1.2.11.5723 OTU 1 seq
prokMSA_id:2117 clone RF20
2.15.1.2.11.5725 OTU 1 seq
prokMSA_id:2118 clone RF27
2.15.1.2.11.5746 OTU 2 seqs
prokMSA_id:2121 clone RFN1
prokMSA_id:2124 clone RFN19. AB009178
2.15.1.2.11.5760 OTU 1 seq
prokMSA_id:19299 fiber-attaching rumen SY11 
2.15.1.2.11.5762 OTU 1 seq
prokMSA_id:43544 clone p-2181-s959-3 
2.15.1.2.11.5764 OTU 1 seq
prokMSA_id:2125 clone RFN40
2.15.1.2.11.5765 OTU 2 seqs
prokMSA_id:2122 clone RFN11. AB009170
prokMSA_id:2126 clone RFN75
2.15.1.2.11.5767 OTU 1 seq
prokMSA_id:2129 clone RFN91
2.15.1.2.11.5803 OTU 5 seqs
prokMSA_id:2073 clone RFN26
prokMSA_id:2076 clone RFN38
prokMSA_id:2077 clone RFN5
prokMSA_id:2082 clone RFN93
prokMSA_id:2083 clone RFN94
2.15.1.2.11.5820 OTU 1 seq
prokMSA_id:84178 rumen clone BF24 
2.15.1.2.11.5834 OTU 2 seqs
prokMSA_id:83192 rumen clone BF29 
prokMSA_id:83664 rumen clone BE6 
2.15.1.2.11.5916 OTU 1 seq
prokMSA_id:83344 rumen clone BE14 
2.15.1.2.11.5917 OTU 1 seq
prokMSA_id:46597 rumen 6C3d-16 
2.15.1.2.11.5920 OTU 1 seq
prokMSA_id:17450 rumen 4C3d-10 
2.15.1.2.11.5926 OTU 10 seqs
prokMSA_id:83241 rumen clone BE30 
prokMSA_id:84373 rumen clone BF31 
prokMSA_id:84424 rumen clone BE10 
prokMSA_id:84905 rumen clone BE22 
prokMSA_id:85274 rumen clone BF23 
prokMSA_id:85648 rumen clone BE21 
prokMSA_id:85887 rumen clone BF22 
prokMSA_id:85996 rumen clone BF28 
prokMSA_id:85999 rumen clone BE17 
prokMSA_id:86234 rumen clone BE32 
2.15.1.2.11.5927 OTU 1 seq
prokMSA_id:2091 clone JW1
2.15.1.2.11.5976 OTU 2 seqs
prokMSA_id:31669 rumen 4C3d-5 
prokMSA_id:85859 rumen clone BF20 
2.15.1.2.11.5985 OTU 1 seq
prokMSA_id:43707 rumen 6C3d-25 
2.15.1.2.11.5986 OTU 1 seq
prokMSA_id:69910 Prevotella ruminicola strain TC2-28 
2.15.1.2.11.6011 OTU 5 seqs
prokMSA_id:83662 rumen clone BE5 
prokMSA_id:83826 rumen clone BF27 
prokMSA_id:84270 rumen clone BE12 AY244929
prokMSA_id:84471 rumen clone BE9 
prokMSA_id:84913 rumen clone BF33 
2.15.1.2.11.6063 OTU 1 seq
prokMSA_id:2120 clone RFP6
2.15.1.2.11.6062 OTU 2 seqs
prokMSA_id:25004 clone p-281-a3 
prokMSA_id:47554 clone p-828-a5 AF371888
2.15.1.2.11.6091 OTU 1 seq
prokMSA_id:82695 rumen clone BE34 
2.15.1.2.11.6092 OTU 2 seqs
prokMSA_id:2119 clone RF31. AF001763
prokMSA_id:85507 rumen clone BF26 
2.15.1.2.11.6107 OTU 1 seq
prokMSA_id:2154 clone 30-23
2.15.1.2.11.6109 OTU 1 seq
prokMSA_id:2159 clone 30-31
2.15.1.2.11.6110 OTU 2 seqs
prokMSA_id:2102 clone 30-11. AF018508
prokMSA_id:82965 rumen clone BE28 
2.15.1.2.11.6127 OTU 2 seqs
prokMSA_id:2116 clone RF18
prokMSA_id:2123 clone RFN15
2.15.1.2.11.6152 OTU 1 seq
prokMSA_id:2069 clone RF37
2.15.1.2.11.6182 OTU 1 seq
prokMSA_id:2074 clone RFN29
2.15.1.2.11.6193 OTU 1 seq
prokMSA_id:2131 clone JW2
2.15.1.2.11.6198 OTU 1 seq
prokMSA_id:2132 clone JW7
2.15.1.2.11.6202 OTU 1 seq
prokMSA_id:2134 clone JW10
2.15.1.2.11.6201 OTU 1 seq
prokMSA_id:2133 clone JW9
2.15.1.2.11.6212 OTU 1 seq
prokMSA_id:82971 rumen clone BE8 
2.15.1.2.11.6210 OTU 1 seq
prokMSA_id:2137 clone 12-12
2.15.1.2.11.6213 OTU 1 seq
prokMSA_id:2138 clone 12-39
2.15.1.2.11.6216 OTU 1 seq
prokMSA_id:2139 clone 12-46
2.15.1.2.11.6223 OTU 1 seq
prokMSA_id:2080 clone RFN89
2.15.1.2.11.6234 OTU 1 seq
prokMSA_id:2140 clone 12-51
2.15.1.2.11.6236 OTU 1 seq
prokMSA_id:2147 clone 12-125
2.15.1.2.11.6235 OTU 1 seq
prokMSA_id:2144 clone 12-112
2.15.1.2.11.6237 OTU 1 seq
prokMSA_id:2148 clone 12-130
2.15.1.2.11.6238 OTU 1 seq
prokMSA_id:2149 clone 30-3
2.15.1.2.11.6240 OTU 1 seq
prokMSA_id:71561 clone p-1864-s962-3 
2.15.1.2.11.6260 OTU 1 seq
prokMSA_id:2151 clone 30-10
2.15.1.2.11.6259 OTU 1 seq
prokMSA_id:2150 clone 30-6
2.15.1.2.11.6264 OTU 1 seq
prokMSA_id:2092 clone JW20
2.15.1.2.11.6266 OTU 1 seq
prokMSA_id:2093 clone JW31
2.15.1.2.11.6271 OTU 1 seq
prokMSA_id:85799 rumen clone BF18 
2.15.1.2.11.6283 OTU 1 seq
prokMSA_id:24907 clone p-2190-s959-3 
2.15.1.2.11.6286 OTU 1 seq
prokMSA_id:2152 clone 30-17
2.15.1.2.11.6287 OTU 1 seq
prokMSA_id:2153 clone 30-18
2.15.1.2.11.6290 OTU 1 seq
prokMSA_id:2157 clone 30-29
2.15.1.2.11.6292 OTU 1 seq
prokMSA_id:2158 clone 30-30
2.15.1.2.11.6291 OTU 1 seq
prokMSA_id:2094 clone 12-15
2.15.1.2.11.6294 OTU 1 seq
prokMSA_id:2098 clone 12-127
2.15.1.2.11.6293 OTU 1 seq
prokMSA_id:2095 clone 12-50
2.15.1.2.11.6295 OTU 1 seq
prokMSA_id:2099 clone 12-132
2.15.1.2.11.6308 OTU 1 seq
prokMSA_id:72956 rumen 12-111 
2.15.1.2.11.6316 OTU 1 seq
prokMSA_id:2161 clone 30-33
2.15.1.2.12 PRV.BUCCAE_SUBGROUP 16 seqs
2.15.1.2.12.5291 OTU 1 seq
prokMSA_id:2172 clone RC17
2.15.1.2.12.5292 OTU 1 seq
prokMSA_id:2173 Prevotella buccae str. 938.11 ATCC 33690
2.15.1.2.12.5293 OTU 1 seq
prokMSA_id:2174 clone RFN35
2.15.1.2.12.5408 OTU 2 seqs
prokMSA_id:2176 Prevotella dentalis str. ES2645 DSM 3688
prokMSA_id:2177 Hallella seregens ATCC 51272
2.15.1.2.12.5460 OTU 1 seq
prokMSA_id:38278 clone F8
2.15.1.2.12.5702 OTU 1 seq
prokMSA_id:2179 clone JW15
2.15.1.2.12.5720 OTU 1 seq
prokMSA_id:68339 Prevotella sp. E9_34 E2 oral isolate 
2.15.1.2.12.5724 OTU 1 seq
prokMSA_id:2181 Prevotella enoeca ATCC 51261
2.15.1.2.12.5812 OTU 1 seq
prokMSA_id:28413 clone p-1310-a5 
2.15.1.2.12.5860 OTU 1 seq
prokMSA_id:46566 clone p-863-a5 
2.15.1.2.12.5966 OTU 1 seq
prokMSA_id:26715 isolate HuCC28
2.15.1.2.12.5974 OTU 2 seqs
prokMSA_id:28097 equine intestinal sp. ML02 clone ML02
prokMSA_id:36936 equine intestinal sp. CW07 clone CW07
2.15.1.2.12.6095 OTU 1 seq
prokMSA_id:22466 clone p-1297-a5 
2.15.1.2.12.6169 OTU 1 seq
prokMSA_id:73255 Prevotella sp. oral clone CY006 
2.15.1.2.13 PRV.NIGRESCENS_SUBGROUP 110 seqs
2.15.1.2.13.5249 OTU 3 seqs
prokMSA_id:71102 Prevotella sp. oral clone AH005 
prokMSA_id:72964 Prevotella sp. oral clone AO036 
prokMSA_id:88701 Prevotella denticola AY323524
2.15.1.2.13.5265 OTU 1 seq
prokMSA_id:46017 clone p-408-o3 
2.15.1.2.13.5331 OTU 1 seq
prokMSA_id:47101 Prevotella sp. oral clone DO022 
2.15.1.2.13.5342 OTU 1 seq
prokMSA_id:51061 E1-K13 
2.15.1.2.13.5388 OTU 2 seqs
prokMSA_id:2201 clone RFN64
prokMSA_id:85059 rumen clone BF16 
2.15.1.2.13.5406 OTU 8 seqs
prokMSA_id:2191 clone 12-7
prokMSA_id:2203 clone 12-44. AF018466
prokMSA_id:2205 clone 12-71
prokMSA_id:2207 clone 12-106
prokMSA_id:2209 clone 12-114
prokMSA_id:2211 clone 30-8. AF018505
prokMSA_id:2214 clone 30-40
prokMSA_id:41434 rumen 12-64 AF018474
2.15.1.2.13.5426 OTU 1 seq
prokMSA_id:70671 Prevotella sp. oral clone DO014 
2.15.1.2.13.5440 OTU 1 seq
prokMSA_id:44821 clone p-2517-18B5 
2.15.1.2.13.5453 OTU 1 seq
prokMSA_id:22951 Prevotella sp. oral clone AU069 
2.15.1.2.13.5484 OTU 1 seq
prokMSA_id:71907 Prevotella sp. oral clone FX046 
2.15.1.2.13.5597 OTU 3 seqs
prokMSA_id:41169 Bacteroidales str. KB3 AB078826
prokMSA_id:45491 Bacteroidales str. KB11 
prokMSA_id:50178 Bacteroidales str. KB13 
2.15.1.2.13.5606 OTU 1 seq
prokMSA_id:18221 rumen 4C3d-6 
2.15.1.2.13.5632 OTU 1 seq
prokMSA_id:72142 adhufec235 
2.15.1.2.13.5665 OTU 1 seq
prokMSA_id:2204 clone 12-56
2.15.1.2.13.5670 OTU 1 seq
prokMSA_id:2206 clone 12-104
2.15.1.2.13.5687 OTU 1 seq
prokMSA_id:2213 clone 30-24
2.15.1.2.13.5690 OTU 1 seq
prokMSA_id:2215 clone 30-49
2.15.1.2.13.5704 OTU 1 seq
prokMSA_id:2225 clone 12-107
2.15.1.2.13.5706 OTU 2 seqs
prokMSA_id:2224 str. PUS3.3
prokMSA_id:45107 Prevotella sp. oral clone F045 
2.15.1.2.13.5705 OTU 1 seq
prokMSA_id:42820 Prevotella sp. oral clone AO096 
2.15.1.2.13.5735 OTU 1 seq
prokMSA_id:74280 Prevotella sp. clone DG059 
2.15.1.2.13.5738 OTU 1 seq
prokMSA_id:2184 clone 30-12
2.15.1.2.13.5741 OTU 1 seq
prokMSA_id:2188 Prevotella veroralis ATCC 33779
2.15.1.2.13.5745 OTU 1 seq
prokMSA_id:18282 equine intestinal sp. PL11 clone PL11
2.15.1.2.13.5756 OTU 13 seqs
prokMSA_id:2197 Prevotella intermedia str. B422 S.Finegold ATCC 25611
prokMSA_id:17066 Prevotella intermedia strain 15-PIN AF414828
prokMSA_id:18327 Prevotella intermedia strain 35-PIN 
prokMSA_id:25390 Prevotella intermedia strain 16-PIN AF414829
prokMSA_id:28131 Prevotella intermedia strain 32-PIN AF414824
prokMSA_id:45410 Prevotella intermedia strain 10-PIN AF414827
prokMSA_id:70556 Prevotella intermedia strain 23-PIN AF414831
prokMSA_id:70907 Prevotella intermedia strain 5-PIN 
prokMSA_id:70996 Prevotella intermedia strain 24-PIN AF414832
prokMSA_id:72112 Prevotella intermedia strain ATCC 25611 AF414821
prokMSA_id:72550 Prevotella intermedia strain 6-PIN 
prokMSA_id:73101 Prevotella intermedia strain 36-PIN 
prokMSA_id:74076 Prevotella intermedia strain 22-PIN AF414830
2.15.1.2.13.5766 OTU 1 seq
prokMSA_id:2193 Prevotella disiens ATCC 29426
2.15.1.2.13.5769 OTU 1 seq
prokMSA_id:69843 Bacteroidaceae str. A42 
2.15.1.2.13.5819 OTU 2 seqs
prokMSA_id:73666 Prevotella ruminicola strain TC2-3 
prokMSA_id:73671 Prevotella ruminicola strain 223/M2/7 
2.15.1.2.13.5846 OTU 1 seq
prokMSA_id:71701 mpn-isolate group 3 
2.15.1.2.13.5864 OTU 1 seq
prokMSA_id:71710 clone p-993-s962-5 
2.15.1.2.13.5893 OTU 1 seq
prokMSA_id:73324 Prevotella sp. oral clone DO045 
2.15.1.2.13.5905 OTU 11 seqs
prokMSA_id:2189 clone adhufec61.25
prokMSA_id:2190 clone adhufec41.25
prokMSA_id:26496 clone p-2443-18B5 
prokMSA_id:29272 adhufec94 
prokMSA_id:29968 Prevotella sp. oral clone FM005 
prokMSA_id:33062 CA75 
prokMSA_id:35402 Prevotella sp. oral clone BE073 
prokMSA_id:36894 clone p-1029-a5 
prokMSA_id:38507 clone p-1980-s959-5 
prokMSA_id:42963 adhufec43 
prokMSA_id:48738 mpn-isolate group 1 
2.15.1.2.13.5909 OTU 1 seq
prokMSA_id:36031 clone p-3779-23G3 
2.15.1.2.13.5929 OTU 3 seqs
prokMSA_id:2200 Prevotella albensis str. M384 DSM 11370
prokMSA_id:2202 clone 12-8. AF018456
prokMSA_id:2216 Prevotella RZ str. RZ
2.15.1.2.13.5940 OTU 1 seq
prokMSA_id:55854 Prevotella sp. E7_34 E1 oral isolate 
2.15.1.2.13.5946 OTU 1 seq
prokMSA_id:72779 Prevotella sp. oral clone DO027 
2.15.1.2.13.5949 OTU 1 seq
prokMSA_id:31240 clone p-2173-s959-3 
2.15.1.2.13.5983 OTU 3 seqs
prokMSA_id:39852 clone p-3951-23G5 
prokMSA_id:45329 mpn-isolate group 4 
prokMSA_id:76393 Prevotella sp. RS2 
2.15.1.2.13.6018 OTU 1 seq
prokMSA_id:68838 clone p-394-o3 
2.15.1.2.13.6026 OTU 1 seq
prokMSA_id:50936 Bacteroidales str. KB1 
2.15.1.2.13.6039 OTU 2 seqs
prokMSA_id:2208 clone 12-109
prokMSA_id:36773 rumen 4C28d-23 
2.15.1.2.13.6045 OTU 13 seqs
prokMSA_id:2198 Prevotella nigrescens str. Lambe 729-74 NCTC 9336
prokMSA_id:34082 E1-K11 
prokMSA_id:35662 Prevotella nigrescens strain 7-PNIG 
prokMSA_id:52068 Prevotella nigrescens strain 37-PNIG 
prokMSA_id:70423 Prevotella nigrescens strain 17-PNIG 
prokMSA_id:70986 Prevotella nigrescens strain 11-PNIG 
prokMSA_id:71190 Prevotella nigrescens strain 31-PNIG 
prokMSA_id:71240 Prevotella nigrescens strain 9-PNIG 
prokMSA_id:71569 Prevotella nigrescens strain 13-PNIG 
prokMSA_id:72329 Prevotella nigrescens strain 8-PNIG 
prokMSA_id:73458 Prevotella nigrescens strain 20-PNIG 
prokMSA_id:73473 Prevotella nigrescens strain ATCC 33563 
prokMSA_id:73933 Prevotella nigrescens strain 18-PNIG 
2.15.1.2.13.6047 OTU 1 seq
prokMSA_id:63123 clone MB-A2-107 
2.15.1.2.13.6072 OTU 2 seqs
prokMSA_id:54330 Prevotella sp. oral clone AA016 AY005058
prokMSA_id:73752 Prevotella sp. oral clone AA020 
2.15.1.2.13.6073 OTU 1 seq
prokMSA_id:17164 Bacteroidales str. KB10 
2.15.1.2.13.6121 OTU 1 seq
prokMSA_id:49622 equine intestinal sp. ML07 clone ML07
2.15.1.2.13.6125 OTU 2 seqs
prokMSA_id:29831 Bacteroidales str. KB7 AB078827
prokMSA_id:30361 Bacteroidales str. KB12 
2.15.1.2.13.6166 OTU 3 seqs
prokMSA_id:24338 Prevotella sp. oral clone AO009 AY005059
prokMSA_id:71918 Prevotella sp. oral clone BR014 
prokMSA_id:88035 Prevotella genomosp. C2 AY278625
2.15.1.2.13.6178 OTU 1 seq
prokMSA_id:16549 clone p-1031-a5 
2.15.1.2.13.6179 OTU 1 seq
prokMSA_id:74407 Prevotella sp. oral clone DA058 
2.15.1.2.13.6207 OTU 1 seq
prokMSA_id:83758 rumen clone BF34 
2.15.1.2.13.6239 OTU 1 seq
prokMSA_id:72590 Prevotella sp. oral clone DO033 
2.15.1.2.13.6275 OTU 1 seq
prokMSA_id:33010 clone p-2407-55G5 
2.15.1.3 CYTOPHAGA_GROUP_I 643 seqs
2.15.1.3.2 MSC.AGGREGANS_SUBGROUP 3 seqs
2.15.1.3.2.5400 OTU 1 seq
prokMSA_id:58645 Flexibacter aggregans subsp. catalaticus strain:IFO 15977
2.15.1.3.2.5813 OTU 1 seq
prokMSA_id:49398 PHOS-HE28 
2.15.1.3.2.6268 OTU 1 seq
prokMSA_id:77910 clone s34 
2.15.1.3.3 BLT.SP_SUBGROUP 51 seqs
2.15.1.3.3.5734 OTU 1 seq
prokMSA_id:2237 endosymbiont of Mastotermes darwiniensis
2.15.1.3.3.5737 OTU 1 seq
prokMSA_id:2238 Blattabacterium sp
2.15.1.3.3.5739 OTU 1 seq
prokMSA_id:2239 Blattabacterium sp
2.15.1.3.3.5777 OTU 1 seq
prokMSA_id:2241 Flavobacterium sp
2.15.1.3.3.5776 OTU 1 seq
prokMSA_id:2240 unnamed organism
2.15.1.3.3.5778 OTU 1 seq
prokMSA_id:2243 Blattabacterium sp
2.15.1.3.3.5828 OTU 1 seq
prokMSA_id:2235 Blattabacterium sp
2.15.1.3.3.6010 OTU 2 seqs
prokMSA_id:2233 Blattabacterium sp
prokMSA_id:2234 Blattabacterium sp
2.15.1.3.3.6141 OTU 3 seqs
prokMSA_id:24514 Blattabacterium relictus AF363715
prokMSA_id:36262 Blattabacterium sp. Cryptocercus relictus AF322473
prokMSA_id:43163 Blattabacterium sp. Cryptocercus relictus 
2.15.1.3.3.6270 OTU 39 seqs
prokMSA_id:2236 Blattabacterium sp
prokMSA_id:16690 Blattabacterium punctulatus 
prokMSA_id:16942 Blattabacterium punctulatus AF363693
prokMSA_id:18153 Blattabacterium sp. Cryptocercus darwini isolate Cumberland 
prokMSA_id:18551 Blattabacterium punctulatus 
prokMSA_id:18626 Blattabacterium sp. Cryptocercus wrighti isolate Bear 
prokMSA_id:20670 Blattabacterium sp. Cryptocercus darwini isolate Cheaha 
prokMSA_id:21143 Blattabacterium punctulatus 
prokMSA_id:21150 Blattabacterium punctulatus 
prokMSA_id:24181 Blattabacterium punctulatus 
prokMSA_id:24910 Blattabacterium punctulatus 
prokMSA_id:24997 Blattabacterium punctulatus 
prokMSA_id:25301 Blattabacterium sp. Cryptocercus wrighti isolate Little 
prokMSA_id:27730 Blattabacterium sp. Cryptocercus punctulatus isolate Mountai
prokMSA_id:27731 Blattabacterium sp. Cryptocercus wrighti isolate Asheville 
prokMSA_id:29432 Blattabacterium punctulatus 
prokMSA_id:30774 Blattabacterium sp. Cryptocercus darwini isolate DeSoto 
prokMSA_id:31782 Blattabacterium punctulatus AF363695
prokMSA_id:32119 Blattabacterium punctulatus 
prokMSA_id:33549 Blattabacterium sp. Cryptocercus garciai isolate Cherry AF32
prokMSA_id:33965 Blattabacterium sp. Cryptocercus punctulatus isolate Mononga
prokMSA_id:35136 Blattabacterium punctulatus 
prokMSA_id:35277 Blattabacterium punctulatus 
prokMSA_id:35615 Blattabacterium punctulatus 
prokMSA_id:37019 Blattabacterium sp. Cryptocercus wrighti AF322469
prokMSA_id:37689 Blattabacterium punctulatus 
prokMSA_id:38143 Blattabacterium sp. Cryptocercus darwini isolate Daniel 
prokMSA_id:39069 Blattabacterium sp. Cryptocercus darwini isolate Buck 
prokMSA_id:40895 Blattabacterium punctulatus 
prokMSA_id:42526 Blattabacterium sp. Cryptocercus garciai isolate Vogel AF322
prokMSA_id:42631 Blattabacterium punctulatus AF363692
prokMSA_id:43084 Blattabacterium sp. Cryptocercus garciai isolate Highway AF3
prokMSA_id:43690 Blattabacterium punctulatus 
prokMSA_id:49951 Blattabacterium punctulatus AF363697
prokMSA_id:50133 Blattabacterium punctulatus AF363698
prokMSA_id:50389 Blattabacterium punctulatus AF363709
prokMSA_id:50894 Blattabacterium punctulatus AF363699
prokMSA_id:52027 Blattabacterium sp. Cryptocercus punctulatus AF310161
prokMSA_id:74844 Blattabacterium punctulatus 
2.15.1.3.4 EMB.BREVIS_SUBGROUP 13 seqs
2.15.1.3.4.5248 OTU 1 seq
prokMSA_id:86113 Bacteroidetes clone 1G12 
2.15.1.3.4.5714 OTU 2 seqs
prokMSA_id:69811 Brumimicrobium glaciale 
prokMSA_id:70335 Cf. Cytophaga sp. MGP-8AN AF530156
2.15.1.3.4.5918 OTU 1 seq
prokMSA_id:28957 Bacteroidetes clone BIui38
2.15.1.3.4.6035 OTU 7 seqs
prokMSA_id:2247 Ornithobacterium rhinotracheale str. D95-36425
prokMSA_id:2248 Ornithobacterium rhinotracheale LMG 9086
prokMSA_id:2249 Ornithobacterium rhinotracheale LMG 11553
prokMSA_id:2250 Ornithobacterium rhinotracheale LMG 15870
prokMSA_id:2251 Ornithobacterium rhinotracheale LMG 11554
prokMSA_id:2252 Ornithobacterium rhinotracheale LMG 14578
prokMSA_id:2253 Ornithobacterium rhinotracheale LMG 11551
2.15.1.3.4.6190 OTU 1 seq
prokMSA_id:41838 CFB group kpj11rc 
2.15.1.3.4.6225 OTU 1 seq
prokMSA_id:2255 clone BA2
2.15.1.3.5 CSB.MENINGOSEPTICUM_SUBGROUP 29 seqs
2.15.1.3.5.5352 OTU 28 seqs
prokMSA_id:21663 Chryseobacterium meningosepticum CIP 7830 AF207073
prokMSA_id:24059 Chryseobacterium meningosepticum PINT 
prokMSA_id:25313 Chryseobacterium meningosepticum AB1572 AF207076
prokMSA_id:26365 Chryseobacterium meningosepticum CIP 79.5 
prokMSA_id:27969 Chryseobacterium meningosepticum CIP 6057 
prokMSA_id:35949 Chryseobacterium meningosepticum CIP 6059 
prokMSA_id:36392 Chryseobacterium meningosepticum CIP 6058 
prokMSA_id:38477 Chryseobacterium meningosepticum AMA 
prokMSA_id:45371 Chryseobacterium meningosepticum HO1J100 
prokMSA_id:45458 Chryseobacterium meningosepticum GEO 
prokMSA_id:56180 Trichloroacetic-acid-degrading TCAA1 
prokMSA_id:59359 clone HP1B06 
prokMSA_id:59361 clone HP1A43 
prokMSA_id:59466 Chryseobacterium mirecola 
prokMSA_id:60999 Flavobacteriaceae 90B 
prokMSA_id:62966 clone LPB28 
prokMSA_id:63613 Chryseobacterium sp. AU939 
prokMSA_id:67365 Chryseobacterium sp. CPW406 
prokMSA_id:67485 Flavobacteriaceae str. EP105 
prokMSA_id:78557 Chryseobacterium sp. DW3 isolate DW3 AJ534853
prokMSA_id:82614 Flavobacterium sp. 'Smarlab BioMol-2300973' 
prokMSA_id:89098 Kaistella koreensis strain Ko10 AY299974
prokMSA_id:90366 Kaistella koreensis complete AY294611
prokMSA_id:91024 clone W4-B50 AY345495
prokMSA_id:91220 K2-70 AY345404
prokMSA_id:91713 Chryseobacterium meningosepticum strain ATCC 13253 AY336568
prokMSA_id:91756 KA75 AY345443
prokMSA_id:94931 CFB group clone S15D-MN4 AJ583192
2.15.1.3.5.5555 OTU 1 seq
prokMSA_id:26642 clone BIfcii29
2.15.1.3.6 CSB.BALUSTINUM_SUBGROUP 39 seqs
2.15.1.3.6.5255 OTU 1 seq
prokMSA_id:19397 CFB group clone TAF-A228 
2.15.1.3.6.5276 OTU 1 seq
prokMSA_id:17076 Chryseobacterium indologenes SB1 
2.15.1.3.6.5339 OTU 1 seq
prokMSA_id:70367 CFB group clone TAF-A199 
2.15.1.3.6.5362 OTU 1 seq
prokMSA_id:73938 CFB group clone TAF-A144 
2.15.1.3.6.5446 OTU 1 seq
prokMSA_id:32882 Flavobacteriaceae str. 2 
2.15.1.3.6.5470 OTU 1 seq
prokMSA_id:63469 Chryseobacterium sp. p20H 
2.15.1.3.6.5495 OTU 1 seq
prokMSA_id:75303 Chryseobacterium sp. kr6 
2.15.1.3.6.5505 OTU 2 seqs
prokMSA_id:31168 Chryseobacterium sp. dU1 
prokMSA_id:48960 Chryseobacterium sp. dU3 AF375838
2.15.1.3.6.5535 OTU 2 seqs
prokMSA_id:43886 Flavobacterium sp. A14 strain A14-B19 AF406663
prokMSA_id:74496 Flavobacterium sp. B17 
2.15.1.3.6.5629 OTU 1 seq
prokMSA_id:21005 Chryseobacterium proteolyticum 
2.15.1.3.6.5653 OTU 1 seq
prokMSA_id:19303 Chryseobacterium joosteii strain LMG 18212
2.15.1.3.6.5726 OTU 1 seq
prokMSA_id:71901 Bergeyella sp. oral clone AK152 
2.15.1.3.6.5730 OTU 1 seq
prokMSA_id:81435 clone BIOEST-10
2.15.1.3.6.5788 OTU 2 seqs
prokMSA_id:19452 Unknown organism 1863 strain F006
prokMSA_id:21236 Unknown organism 1863 strain F006C
2.15.1.3.6.5797 OTU 1 seq
prokMSA_id:20686 CFB group clone TAF-A70 
2.15.1.3.6.5843 OTU 7 seqs
prokMSA_id:2261 Riemerella anatipestifer ATCC 11845
prokMSA_id:22221 Riemerella anatipestifer strain 4005 
prokMSA_id:24404 Riemerella anatipestifer strain 4280 
prokMSA_id:47818 Riemerella anatipestifer serotype 19 strain 30/90 
prokMSA_id:75752 flavobacterium sp. clone JG37-AG-16
prokMSA_id:82260 Slime control method in paper making step of neutral paper m
prokMSA_id:87140 Flavobacteriaceae genomosp. C1 AY278614
2.15.1.3.6.5862 OTU 3 seqs
prokMSA_id:2265 Flavobacterium paraogurii
prokMSA_id:2274 Chryseobacterium indologenes
prokMSA_id:2276 Chryseobacterium gleum
2.15.1.3.6.5934 OTU 2 seqs
prokMSA_id:45877 Haloanella gallinarum complete AB035150
prokMSA_id:86598 Haloanella gallinarum 
2.15.1.3.6.6079 OTU 1 seq
prokMSA_id:78016 CFB group clone:APe4_42
2.15.1.3.6.6090 OTU 1 seq
prokMSA_id:77694 CFB group clone:APe2_9
2.15.1.3.6.6100 OTU 1 seq
prokMSA_id:71527 Chryseobacterium defluvium isolate B2
2.15.1.3.6.6126 OTU 1 seq
prokMSA_id:32560 Chryseobacterium sp. FR2 complete 
2.15.1.3.6.6157 OTU 1 seq
prokMSA_id:59536 Enrichment culture LB-Q clone LB-Q 
2.15.1.3.6.6195 OTU 1 seq
prokMSA_id:72435 Flavobacterium-like sp. oral clone AY017 
2.15.1.3.6.6215 OTU 1 seq
prokMSA_id:46641 Flavobacterium sp. cpw707 
2.15.1.3.6.6251 OTU 1 seq
prokMSA_id:2268 clone WsCH39
2.15.1.3.6.6284 OTU 1 seq
prokMSA_id:2270 clone BS1
2.15.1.3.9 MY.ODORATUS_SUBGROUP 2 seqs
2.15.1.3.9.5533 OTU 2 seqs
prokMSA_id:2285 str. SS2
prokMSA_id:2286 str. SS1
2.15.1.3.10 F.FLEVENSE_SUBGROUP 181 seqs
2.15.1.3.10.5244 OTU 1 seq
prokMSA_id:18678 CFB group MERTZ_0CM_382 
2.15.1.3.10.5243 OTU 1 seq
prokMSA_id:31371 Bacteroidetes clone BIhi40
2.15.1.3.10.5261 OTU 2 seqs
prokMSA_id:16309 Crater Lake CL0-114 AF316792
prokMSA_id:23279 Crater Lake CL0-37 
2.15.1.3.10.5277 OTU 4 seqs
prokMSA_id:20304 flavobacterium sp. clone A2 AJ319006
prokMSA_id:23404 Flavobacterium sp. IsoC1 isolate IsoC1
prokMSA_id:40777 Flavobacterium sp. IsoB1 isolate IsoB1
prokMSA_id:52496 Flavobacterium sp. IsoA1 isolate IsoA1 AJ319015
2.15.1.3.10.5282 OTU 1 seq
prokMSA_id:2299 Flavobacterium psychrophilum ATCC 49418
2.15.1.3.10.5301 OTU 2 seqs
prokMSA_id:2324 clone BURTON-44
prokMSA_id:22560 CFB group MERTZ_2CM_320 
2.15.1.3.10.5336 OTU 1 seq
prokMSA_id:23658 SIC.B8232 
2.15.1.3.10.5341 OTU 1 seq
prokMSA_id:44565 CFB group clone TAF-A168 
2.15.1.3.10.5367 OTU 1 seq
prokMSA_id:83488 Cf. Cytophaga sp. MDA2507 
2.15.1.3.10.5391 OTU 1 seq
prokMSA_id:21369 Bacteroidetes clone BIwi5
2.15.1.3.10.5399 OTU 5 seqs
prokMSA_id:2323 Cytophaga sp. str. 0092
prokMSA_id:57758 Flavobacterium sp. SC1 
prokMSA_id:57759 Flavobacterium sp. SR1 
prokMSA_id:57760 Flavobacterium sp. BR1 
prokMSA_id:58641 Flexibacter aurantiacus subsp. excathedrus strain:IFO 16024
2.15.1.3.10.5435 OTU 4 seqs
prokMSA_id:80388 clone ARKICE-35 AF468305
prokMSA_id:81071 Arctic sea ice clone ARKXV/1-43 AY165589
prokMSA_id:81822 Arctic sea ice clone ARKXV/1-139 
prokMSA_id:82527 Antarctic R-8282 strain R-8282
2.15.1.3.10.5462 OTU 19 seqs
prokMSA_id:17527 Flavobacterium omnivorum As1.2747 
prokMSA_id:43638 rape rhizosphere wr0076 
prokMSA_id:48501 Cytophaga sp. P1 
prokMSA_id:55662 Flavobacterium sp. EP134 
prokMSA_id:60350 clone Glu1 
prokMSA_id:67568 Flavobacterium sp. EP360 
prokMSA_id:67571 Flavobacterium sp. EP136 
prokMSA_id:67577 Flavobacterium sp. EP372 
prokMSA_id:69817 Flavobacterium sp. EP300 
prokMSA_id:69846 Flavobacterium sp. EP306 
prokMSA_id:70207 Flavobacterium sp. EP233 
prokMSA_id:70214 Flavobacterium sp. EP241 
prokMSA_id:70473 Flavobacterium sp. EP246 
prokMSA_id:70652 Flavobacterium sp. EP297 
prokMSA_id:71261 Flavobacterium sp. EP328 
prokMSA_id:71429 Flavobacterium sp. EP251 
prokMSA_id:71583 Flavobacterium sp. EP204 
prokMSA_id:73010 Flavobacterium sp. EP101 
prokMSA_id:73277 Flavobacterium sp. EP286 
2.15.1.3.10.5479 OTU 9 seqs
prokMSA_id:30411 Flavobacterium xinjiangensis AS1.2749 
prokMSA_id:34165 Flavobacterium sp. ST-92 
prokMSA_id:36697 Flavobacterium sp. ST-10 
prokMSA_id:41560 Flavobacterium aff. xylanivorum A1/C-aer/OIV 
prokMSA_id:52347 Flavobacterium sp. ST-82 
prokMSA_id:80159 Arctic sea ice ARK10287 
prokMSA_id:81617 Bacteroidetes ARK10264 
prokMSA_id:83757 Antarctic R-8022 strain R-8022
prokMSA_id:85147 Antarctic R-7550 strain R-7550
2.15.1.3.10.5482 OTU 1 seq
prokMSA_id:73509 Flavobacterium sp. EP333 
2.15.1.3.10.5480 OTU 1 seq
prokMSA_id:77276 Earthworm gut ED5 
2.15.1.3.10.5486 OTU 1 seq
prokMSA_id:2300 clone MK06
2.15.1.3.10.5485 OTU 1 seq
prokMSA_id:44265 FukuN36 
2.15.1.3.10.5487 OTU 1 seq
prokMSA_id:2301 clone MK08
2.15.1.3.10.5490 OTU 1 seq
prokMSA_id:47437 CFB group GOBB3-308 
2.15.1.3.10.5531 OTU 1 seq
prokMSA_id:2313 Gelidibacter QSSC1-21 str. QSSC1-21
2.15.1.3.10.5536 OTU 1 seq
prokMSA_id:2314 str. QSSC9-3
2.15.1.3.10.5588 OTU 1 seq
prokMSA_id:44727 Flavobacterium sp. GOBB3-109 
2.15.1.3.10.5590 OTU 1 seq
prokMSA_id:82700 Antarctic R-9033 strain R-9033
2.15.1.3.10.5615 OTU 1 seq
prokMSA_id:71577 Cytophagales clone PRD01b005B 
2.15.1.3.10.5661 OTU 1 seq
prokMSA_id:21882 Spd2B_4 
2.15.1.3.10.5675 OTU 1 seq
prokMSA_id:25476 CFB group clone TAF-A35 
2.15.1.3.10.5742 OTU 1 seq
prokMSA_id:46038 ARCTIC.16 
2.15.1.3.10.5750 OTU 2 seqs
prokMSA_id:19998 Flavobacterium sp. GOBB3-C103-3 
prokMSA_id:37648 Flavobacterium sp. GOBB3-C101 
2.15.1.3.10.5821 OTU 1 seq
prokMSA_id:44589 CFB group clone TAF-A38 
2.15.1.3.10.5847 OTU 1 seq
prokMSA_id:72366 CFB group clone TAF-B87 
2.15.1.3.10.5867 OTU 1 seq
prokMSA_id:48020 CFB group MERTZ_0CM_293 
2.15.1.3.10.5901 OTU 5 seqs
prokMSA_id:79763 Arctic sea ice ARK10104 
prokMSA_id:80437 Arctic sea ice ARK10164 
prokMSA_id:80488 Arctic sea ice ARK10161 
prokMSA_id:80779 Arctic sea ice ARK10270 
prokMSA_id:80970 Arctic sea ice ARK10159 
2.15.1.3.10.5915 OTU 1 seq
prokMSA_id:76123 bacteroidetes clone S15A-MN27
2.15.1.3.10.5931 OTU 6 seqs
prokMSA_id:2310 Flavobacterium columnare str. IAM 14301
prokMSA_id:2311 Flavobacterium columnare str. FK 401
prokMSA_id:2317 Flavobacterium columnare str. JIP 49/87 ATCC 49513
prokMSA_id:31594 Flavobacterium sp. IsoD1 isolate IsoD1 AJ319020
prokMSA_id:58640 Flavobacterium columnare strain:IFO 15943
prokMSA_id:77434 Flavobacterium columnare 
2.15.1.3.10.5933 OTU 1 seq
prokMSA_id:2325 Flavobacterium columnare str. PH-97028 IAM 14821
2.15.1.3.10.5935 OTU 1 seq
prokMSA_id:2326 clone BS5
2.15.1.3.10.5954 OTU 22 seqs
prokMSA_id:2296 clone K20-54
prokMSA_id:2297 Flavobacterium BURTON-22. AF142841
prokMSA_id:2298 Flavobacterium frigidarium complete 
prokMSA_id:2319 Flavobacterium hibernum ATCC 51468
prokMSA_id:2327 Flavobacterium xanthum ACAM 81
prokMSA_id:18728 Acanthamoeba sp. K69i AF366583
prokMSA_id:22760 Flavobacterium SIC.ARCTIC.156 AF277542
prokMSA_id:27830 Acanthamoeba sp. KHLA1 
prokMSA_id:28033 Cytophaga sp. KT0234A 
prokMSA_id:30501 Cytophagales clone PRD01b007B 
prokMSA_id:38264 Elbe River snow isolate Iso8 
prokMSA_id:58643 Flavobacterium johnsoniae strain:IFO 15970
prokMSA_id:67491 Flavobacterium sp. SW254 
prokMSA_id:69855 Flavobacterium sp. EP209 
prokMSA_id:69915 Flavobacterium sp. EP217 
prokMSA_id:70674 Flavobacterium sp. EP236 
prokMSA_id:71925 Flavobacterium sp. EP030 
prokMSA_id:73974 Flavobacterium hibernum 
prokMSA_id:77602 CFB group clone:APe4_4
prokMSA_id:83993 Flavobacterium sp. GOBB3-209 
prokMSA_id:85358 Antarctic R-9003 strain R-9003
prokMSA_id:91330 clone W4A-G04 AY345505
2.15.1.3.10.5968 OTU 2 seqs
prokMSA_id:19188 BA12 
prokMSA_id:31709 BA6 
2.15.1.3.10.5997 OTU 30 seqs
prokMSA_id:2295 Flavobacterium sp. str. A265
prokMSA_id:2309 Flavobacterium aquatile ATCC 11947 . M62797
prokMSA_id:2320 Flavobacterium sp. str. A103
prokMSA_id:2322 Flavobacterium sp. ACAM 123. U85890
prokMSA_id:2330 Flexibacter aurantiacus str. Lewin DWO ATCC 23107 . M62792
prokMSA_id:2334 Flavobacterium johnsoniae M59051
prokMSA_id:2401 Cytophaga fucicola str. NN015860 strain
prokMSA_id:23812 Cellulophaga lytica strain:IFO15986
prokMSA_id:25886 Cellulophaga lytica strain:IFO16020
prokMSA_id:28162 Cellulophaga lytica strain:IFO16021
prokMSA_id:29722 Cellulophaga lytica strain:MBIC1544
prokMSA_id:31829 Cellulophaga lytica strain ACEM21 AY035870
prokMSA_id:34517 Cellulophaga lytica strain:IFO16022
prokMSA_id:52052 CFB group GOBB3-317_2 
prokMSA_id:58543 Flavobacterium gelidilacus strain LMG 21477 AJ440996
prokMSA_id:58544 Flavobacterium gelidilacus strain LMG 21619 AJ507151
prokMSA_id:58629 Flavobacterium psychrophilum strain:IFO 15942
prokMSA_id:69711 Bacteroidetes clone FTLM155 AF529117
prokMSA_id:71270 Flavobacteriales CF-1 AY145539
prokMSA_id:71465 Flavobacterium sp. EP125 AF493655
prokMSA_id:72663 Flavobacterium sp. V12.MO.200.17 AJ244699
prokMSA_id:73721 Flavobacterium sp. EP130 AF493637
prokMSA_id:73825 CS910 AY124339
prokMSA_id:82751 Antarctic R-8963 strain R-8963 AJ440998
prokMSA_id:84320 Antarctic R-7666 strain R-7666
prokMSA_id:84602 Antarctic R-7579 strain R-7579
prokMSA_id:85662 Flavobacteria clone TLM12 
prokMSA_id:88618 Glacier FJS32 AY315159
prokMSA_id:93990 Gelidibacter sp. 'BSD S2 05' AY259512
prokMSA_id:98800 Flavobacterium fryxellicola strain LMG 22022 AJ585429
2.15.1.3.10.6014 OTU 1 seq
prokMSA_id:48592 SIC.946 
2.15.1.3.10.6017 OTU 1 seq
prokMSA_id:72799 Flavobacterium sp. IsoE1 isolate IsoE1
2.15.1.3.10.6027 OTU 1 seq
prokMSA_id:51596 BAx1 
2.15.1.3.10.6034 OTU 2 seqs
prokMSA_id:2312 Flavobacterium columnare str. EK-28 IAM 14820
prokMSA_id:2315 Flavobacterium columnare str. LP 8
2.15.1.3.10.6041 OTU 1 seq
prokMSA_id:40092 antarctic soil clone bh3.26 
2.15.1.3.10.6042 OTU 3 seqs
prokMSA_id:24397 isolate BUG-82 AJ320489
prokMSA_id:73968 Bacteroidetes so23 AF530973
prokMSA_id:84227 Antarctic R-7515 strain R-7515
2.15.1.3.10.6067 OTU 10 seqs
prokMSA_id:17681 clone KS27 AF328176
prokMSA_id:26719 SIC.B8012 AF277556
prokMSA_id:30111 clone KS28 AF328177
prokMSA_id:31861 clone KS88 AF328221
prokMSA_id:33373 clone KS10 AF328164
prokMSA_id:39816 clone KS15 AF328168
prokMSA_id:46252 CFB group kbc13 AF195444
prokMSA_id:51877 clone KS16 AF328169
prokMSA_id:75119 Croceibacter atlanticus strain HTCC2559T 
prokMSA_id:83353 Marine arctic deep-sea FI7 AJ557873
2.15.1.3.10.6077 OTU 1 seq
prokMSA_id:52923 Flavobacterium sp. clone GOBB3-CL141 
2.15.1.3.10.6083 OTU 1 seq
prokMSA_id:59360 clone HP1A39 
2.15.1.3.10.6089 OTU 1 seq
prokMSA_id:65530 yard-trimming-compost clone S-72 
2.15.1.3.10.6103 OTU 1 seq
prokMSA_id:17931 CFB group GOBB3-210 
2.15.1.3.10.6112 OTU 1 seq
prokMSA_id:39169 CFB group A1002 
2.15.1.3.10.6113 OTU 3 seqs
prokMSA_id:28744 Flavobacterium sp. IsoD2 isolate IsoD2
prokMSA_id:32751 Flavobacterium sp. IsoC2 isolate IsoC2 AJ319019
prokMSA_id:59118 Flavobacterium sp. BH11.5 isolate BH11.5 AJ440504
2.15.1.3.10.6145 OTU 2 seqs
prokMSA_id:22450 MK12 
prokMSA_id:65573 yard-trimming-compost clone S-16 
2.15.1.3.10.6163 OTU 1 seq
prokMSA_id:72573 CFB group clone TAF-A188 
2.15.1.3.10.6186 OTU 1 seq
prokMSA_id:39294 Cytophagales clone 15 
2.15.1.3.10.6197 OTU 1 seq
prokMSA_id:39414 MK18 
2.15.1.3.10.6200 OTU 1 seq
prokMSA_id:40807 Flavobacterium sp. GOBB3-C108 
2.15.1.3.10.6203 OTU 2 seqs
prokMSA_id:68616 clone KRA30+19 
prokMSA_id:68626 clone KRA30+03 AY081974
2.15.1.3.10.6206 OTU 2 seqs
prokMSA_id:33592 Flexibacter sp. FR1 AF217563
prokMSA_id:41509 O11D1 
2.15.1.3.10.6220 OTU 1 seq
prokMSA_id:19183 antarctic soil clone bh1.62 
2.15.1.3.10.6254 OTU 1 seq
prokMSA_id:23950 CFB group A0653 
2.15.1.3.10.6274 OTU 1 seq
prokMSA_id:43553 BS7 
2.15.1.3.10.6313 OTU 1 seq
prokMSA_id:20632 earthworm cast clone C147 
2.15.1.3.10.6322 OTU 1 seq
prokMSA_id:27491 antarctic soil clone bh2.35 
2.15.1.3.11 FLX.MARITIMUS_SUBGROUP 83 seqs
2.15.1.3.11.5251 OTU 5 seqs
prokMSA_id:21361 Flexibacter sp. kba19 AF195446
prokMSA_id:22718 Tenacibaculum mesophilum strain:MBIC4357 AB032504
prokMSA_id:31105 Tenacibaculum mesophilum strain:MBIC1140
prokMSA_id:44581 Tenacibaculum mesophilum strain:MBIC1543
prokMSA_id:52498 Tenacibaculum mesophilum strain:MBIC4356 AB032503
2.15.1.3.11.5317 OTU 27 seqs
prokMSA_id:2352 Polaribacter franzmannii str. 301
prokMSA_id:2355 Polaribacter IC063 str. IC063
prokMSA_id:2356 Polaribacter IC066 str. IC066
prokMSA_id:2357 Polaribacter filamentus str. 215
prokMSA_id:28929 Polaribacter Arctic96B-11 AF354621
prokMSA_id:43476 Polaribacter Arctic97A-15 AF354620
prokMSA_id:44604 marine ZD0255 
prokMSA_id:58630 Tenacibaculum maritimum strain:IFO 15946
prokMSA_id:61127 Polaribacter sp. MGP-9 
prokMSA_id:67335 Polaribacter sp. SW007 
prokMSA_id:70110 Marine ATAM173a_2 
prokMSA_id:79136 Bacteroidetes KMM 3938 
prokMSA_id:79783 Arctic sea ice ARK10177 
prokMSA_id:79935 Arctic sea ice associated ARK10121 
prokMSA_id:80091 Arctic sea ice ARK10048 
prokMSA_id:80368 Arctic sea ice associated ARK10124 
prokMSA_id:80402 Polaribacter sp. HLE 
prokMSA_id:80621 Arctic sea ice ARK10105 
prokMSA_id:81099 Polaribacter irgensii strain ANT9044 
prokMSA_id:81397 Polaribacter sp. ANT9167 
prokMSA_id:81422 Polaribacter irgensii strain ANT9243 
prokMSA_id:81705 Antarctic sea ice clone ANTXI/4_14-12 
prokMSA_id:81910 Antarctic sea ice clone ANTXI/4_14-37 
prokMSA_id:81957 Polaribacter irgensii strain ANT9210 
prokMSA_id:81979 Polaribacter franzmannii strain ANT9260 
prokMSA_id:82211 Antarctic sea ice clone ANTXI/4_14-55 
prokMSA_id:84331 Cellulophaga sp. E26 
2.15.1.3.11.5412 OTU 1 seq
prokMSA_id:42267 CFB group MERTZ_0CM_16 
2.15.1.3.11.5499 OTU 1 seq
prokMSA_id:78228 Cytophagales clone Hyd24-2-2
2.15.1.3.11.5507 OTU 1 seq
prokMSA_id:19411 Polaribacter SIC.10332 
2.15.1.3.11.5618 OTU 1 seq
prokMSA_id:43791 Flexibacter sp. UST991130-045 
2.15.1.3.11.5641 OTU 1 seq
prokMSA_id:30581 CFB group MERTZ_2CM_80 
2.15.1.3.11.5660 OTU 1 seq
prokMSA_id:25083 CFB group CtaxPhil-13 
2.15.1.3.11.5695 OTU 1 seq
prokMSA_id:77676 Cytophagales clone Hyd24-41
2.15.1.3.11.5758 OTU 1 seq
prokMSA_id:61125 Tenacibaculum sp. MGP-10 
2.15.1.3.11.5873 OTU 1 seq
prokMSA_id:45481 Tenacibaculum amylolyticum strain:MBIC4355
2.15.1.3.11.5894 OTU 3 seqs
prokMSA_id:36779 Cytophaga sp. NBF7 
prokMSA_id:42720 Cytophaga sp. NBF12 
prokMSA_id:69032 Marine NBF14 
2.15.1.3.11.5919 OTU 2 seqs
prokMSA_id:22873 Tenacibaculum cellulophagum strain D30 
prokMSA_id:59171 Sphingobacteriales RED34 
2.15.1.3.11.5922 OTU 1 seq
prokMSA_id:25172 CFB group MERTZ_2CM_289 
2.15.1.3.11.5991 OTU 23 seqs
prokMSA_id:20824 Tenacibaculum ovolyticus strain:IFO15992 AB032507
prokMSA_id:24142 Tenacibaculum ovolyticus strain:IFO15993 AB032508
prokMSA_id:31362 Tenacibaculum sp. clone MERTZ_0CM_42 AF425756
prokMSA_id:37069 Tenacibaculum ovolyticus strain:IAM14318 AB032506
prokMSA_id:47567 clone SIC.9-10 AF333086
prokMSA_id:51108 Polaribacter SIC.B9029 AF277564
prokMSA_id:58631 Tenacibaculum ovolyticum strain:IFO 15947 AB078058
prokMSA_id:66033 Cytophaga sp. MBIC04665 
prokMSA_id:66034 Cytophaga sp. T-551 
prokMSA_id:67328 Tenacibaculum sp. SW258 
prokMSA_id:70094 Polaribacter sp. SW019 AF493675
prokMSA_id:70449 Tenacibaculum sp. SW274 
prokMSA_id:73960 Tenacibaculum sp. MGP-74/AN6 
prokMSA_id:82951 Bacteroidetes clone CF18 AY274865
prokMSA_id:85098 Bacteroidetes clone CF10 AY274847
prokMSA_id:87187 Flavobacteriaceae G1A2 AY285942
prokMSA_id:87529 Flavobacteriaceae G912S3B AY285945
prokMSA_id:87711 Flavobacteriaceae G912S4 AY285946
prokMSA_id:92204 Flavobacteriaceae G121102s2_3 AY353820
prokMSA_id:92286 Flavobacteriaceae G1112S4A AY353814
prokMSA_id:92882 Flavobacteriaceae G121102s2_2 AY353819
prokMSA_id:92966 Flavobacteriaceae G1112S4B AY353815
prokMSA_id:93100 Flavobacteriaceae G11A3 AY353817
2.15.1.3.11.6021 OTU 1 seq
prokMSA_id:2353 clone BURTON-38
2.15.1.3.11.6024 OTU 1 seq
prokMSA_id:2354 Polaribacter BURTON-11
2.15.1.3.11.6037 OTU 1 seq
prokMSA_id:2359 Cytophaga sp. str. JTB143
2.15.1.3.11.6058 OTU 1 seq
prokMSA_id:2362 marine snow associated clone agg50
2.15.1.3.11.6094 OTU 4 seqs
prokMSA_id:48241 KHN36A 
prokMSA_id:53529 Tenacibaculum sp. UST991130-047 AF465364
prokMSA_id:58642 Flexibacter aurantiacus subsp. copepodarum strain:IFO 15978
prokMSA_id:59173 Tenacibaculum sp. RED13 AY136123
2.15.1.3.11.6164 OTU 1 seq
prokMSA_id:18143 Flavobacteriaceae str. SA-0082 
2.15.1.3.11.6211 OTU 1 seq
prokMSA_id:34364 clone CTD5B 
2.15.1.3.11.6229 OTU 1 seq
prokMSA_id:39685 Marine gliding UWA-1 
2.15.1.3.11.6252 OTU 1 seq
prokMSA_id:61850 CFB group clone R103-B20 
2.15.1.3.11.6318 OTU 1 seq
prokMSA_id:84084 Flavobacteriaceae T15 
2.15.1.3.12 CAP.OCHRACEA_SUBGROUP 40 seqs
2.15.1.3.12.5263 OTU 1 seq
prokMSA_id:71957 Capnocytophaga sp. oral clone DZ074 
2.15.1.3.12.5296 OTU 2 seqs
prokMSA_id:2371 Coenonia anatina LMG 14382
prokMSA_id:31284 Coenonia anatina 
2.15.1.3.12.5300 OTU 2 seqs
prokMSA_id:2383 Capnocytophaga canimorsus str. CalHlthDept 2340-2-61 ATCC 35
prokMSA_id:2392 Capnocytophaga canimorsus str. CalHlthDept 2340-2-61 ATCC 35
2.15.1.3.12.5401 OTU 5 seqs
prokMSA_id:2366 Capnocytophaga granulosa LMG 16022
prokMSA_id:2368 Capnocytophaga granulosa ATCC 51502
prokMSA_id:2386 Capnocytophaga gingivalis ATCC 33624
prokMSA_id:58282 Capnocytophaga gingivalis 
prokMSA_id:70530 Capnocytophaga sp. oral clone AH015 
2.15.1.3.12.5434 OTU 2 seqs
prokMSA_id:56208 Capnocytophaga sp. ChDC OS43 
prokMSA_id:58285 Capnocytophaga sp. ChDC OS44 
2.15.1.3.12.5526 OTU 1 seq
prokMSA_id:2382 Capnocytophaga gingivalis ATCC 33624
2.15.1.3.12.5563 OTU 1 seq
prokMSA_id:66035 Cytophaga sp. I-545 
2.15.1.3.12.5645 OTU 1 seq
prokMSA_id:70542 Capnocytophaga sp. clone DS022 
2.15.1.3.12.5836 OTU 1 seq
prokMSA_id:2377 Capnocytophaga granulosa LMG 12119
2.15.1.3.12.5841 OTU 1 seq
prokMSA_id:70616 Capnocytophaga sp. oral clone BB167 
2.15.1.3.12.5906 OTU 2 seqs
prokMSA_id:2373 Capnocytophaga sputigena ATCC 33612
prokMSA_id:2374 Capnocytophaga sputigena str. 897 CIP 100
2.15.1.3.12.5969 OTU 11 seqs
prokMSA_id:2363 Capnocytophaga ochracea ATCC 27872
prokMSA_id:2364 Capnocytophaga ochracea FDC 7b. U41354
prokMSA_id:2369 Capnocytophaga ochracea LMG 12115. U41353
prokMSA_id:2394 Capnocytophaga ochracea LMG 12117. U41351
prokMSA_id:26200 Capnocytophaga sp. oral clone X066 
prokMSA_id:29194 Capnocytophaga sp. oral clone X089 
prokMSA_id:39124 Capnocytophaga sp. oral clone AA032 
prokMSA_id:56144 Capnocytophaga ochracea strain ChDC OS48 
prokMSA_id:58284 Capnocytophaga ochracea strain ChDC OS42 
prokMSA_id:59534 Capnocytophaga sp. oral strain P4G_35 P4 
prokMSA_id:87442 Capnocytophaga genomosp. C1 AY278613
2.15.1.3.12.6043 OTU 1 seq
prokMSA_id:73803 Capnocytophaga sp. oral clone EL043 
2.15.1.3.12.6075 OTU 2 seqs
prokMSA_id:2365 Capnocytophaga cynodegmi ATCC 49044
prokMSA_id:2384 Capnocytophaga cynodegmi ATCC 49044 . L14638
2.15.1.3.12.6098 OTU 2 seqs
prokMSA_id:2370 Capnocytophaga ochracea str. 25 ATCC 33596
prokMSA_id:2381 Capnocytophaga ochracea str. 25 ATCC 33596 . L14635
2.15.1.3.12.6246 OTU 3 seqs
prokMSA_id:21242 Capnocytophaga sp. oral clone BM058 AY005075
prokMSA_id:23229 Capnocytophaga sp. oral clone BU084 
prokMSA_id:73111 Capnocytophaga sp. oral clone BR085 
2.15.1.3.12.6248 OTU 2 seqs
prokMSA_id:2367 Capnocytophaga sp. str. S3
prokMSA_id:37716 Capnocytophaga sp. oral strain S3 
2.15.1.3.13 CY.ULIGINOSA_SUBGROUP 75 seqs
2.15.1.3.13.5269 OTU 1 seq
prokMSA_id:35795 CFB group clone:TYM--16 
2.15.1.3.13.5297 OTU 1 seq
prokMSA_id:83454 Flavobacteriaceae TN 
2.15.1.3.13.5324 OTU 1 seq
prokMSA_id:22632 CLEAR-5 
2.15.1.3.13.5421 OTU 5 seqs
prokMSA_id:55430 Cytophaga sp. I-689 
prokMSA_id:66036 Cytophaga sp. I-105 
prokMSA_id:66037 Cytophaga sp. I-1147 
prokMSA_id:66038 Cytophaga sp. I-602 AB073569
prokMSA_id:66039 Cytophaga sp. I-601 
2.15.1.3.13.5423 OTU 7 seqs
prokMSA_id:2407 str. QSSC9-14
prokMSA_id:23255 Aequorivita ferruginea SW49T 
prokMSA_id:33316 Aequorivita lipolytica Y10-2T 
prokMSA_id:39184 Aequorivita crocea Y12-2T 
prokMSA_id:40585 Aequorivita ferruginea O9-2 
prokMSA_id:45756 GR-Sh1-5 clone GR-Sh1-5 AJ296578
prokMSA_id:52249 Aequorivita ferruginea G#5 
2.15.1.3.13.5451 OTU 1 seq
prokMSA_id:36799 Cellulophaga sp. ACEM20 
2.15.1.3.13.5456 OTU 6 seqs
prokMSA_id:2400 Cytophaga baltica str. NN015840 strain
prokMSA_id:45411 Cytophaga sp. KT02ds20 
prokMSA_id:67189 Cellulophaga sp. MM#3 
prokMSA_id:70798 Cellulophaga sp. SW265 
prokMSA_id:71231 Cellulophaga sp. SW285 
prokMSA_id:83359 Cytophaga sp. E4 
2.15.1.3.13.5503 OTU 1 seq
prokMSA_id:76628 Bacteroidetes Ko706 
2.15.1.3.13.5509 OTU 1 seq
prokMSA_id:82529 Cellulophaga sp. E14 
2.15.1.3.13.5538 OTU 1 seq
prokMSA_id:54172 TAYNAYA-5 
2.15.1.3.13.5569 OTU 1 seq
prokMSA_id:2399 clone BURTON-28
2.15.1.3.13.5622 OTU 1 seq
prokMSA_id:80973 Arctic sea ice associated ARK10146 
2.15.1.3.13.5628 OTU 1 seq
prokMSA_id:44039 RSHD3B4 
2.15.1.3.13.5630 OTU 2 seqs
prokMSA_id:71519 isolate HOS12 Z88574
prokMSA_id:86285 Bacteroidetes clone 1D10 
2.15.1.3.13.5659 OTU 1 seq
prokMSA_id:27077 Flavobacteriaceae QSSC9L-8 
2.15.1.3.13.5663 OTU 1 seq
prokMSA_id:83115 Cytophaga sp. E46 
2.15.1.3.13.5728 OTU 1 seq
prokMSA_id:69822 Cytophaga sp. MBIC04693 
2.15.1.3.13.5733 OTU 7 seqs
prokMSA_id:53677 Cellulophaga SIC.B8113 
prokMSA_id:79769 clone ARKDMS-74 
prokMSA_id:80367 clone ARKCH4-88 
prokMSA_id:80618 Arctic sea ice ARK10044 
prokMSA_id:80944 Arctic sea ice ARK10223 
prokMSA_id:81144 Bacteroidetes ANT9105 
prokMSA_id:81534 Antarctic sea ice clone ANTXI/4_14-81 
2.15.1.3.13.5807 OTU 1 seq
prokMSA_id:40211 CFB group FL13A12 
2.15.1.3.13.5942 OTU 1 seq
prokMSA_id:67323 Flavobacteriaceae str. SW072 
2.15.1.3.13.5955 OTU 1 seq
prokMSA_id:61970 Flavobacterium sp. V4.MS.29 
2.15.1.3.13.5956 OTU 5 seqs
prokMSA_id:58646 Flexibacter aggregans strain:IFO 15975
prokMSA_id:70583 Cytophaga sp. KT02ds22 AF235114
prokMSA_id:78926 Flexibacter sp. 2216.15.5 AB094462
prokMSA_id:81311 Arenibacter troitsensis 
prokMSA_id:96209 Cytophaga sp. EPR 14 AY394872
2.15.1.3.13.5960 OTU 1 seq
prokMSA_id:45309 Marine ATAM173a_6 
2.15.1.3.13.5971 OTU 13 seqs
prokMSA_id:2402 Cytophaga uliginosa str. Zobell 553 ATCC 14397 . M62799
prokMSA_id:46683 Cytophaga sp. KT02ds18 AF235126
prokMSA_id:61123 Zobellia sp. MGP-14 
prokMSA_id:67321 Flavobacteriaceae str. SW268 
prokMSA_id:80846 Arctic sea ice associated ARK10141 
prokMSA_id:83542 Cellulophaga sp. E6 
prokMSA_id:83581 Cellulophaga sp. RE2-13 
prokMSA_id:83608 Bacteroidetes KMM 3951 
prokMSA_id:84346 Marine HP25 
prokMSA_id:85064 Bacteroidetes KMM 3949 
prokMSA_id:85665 Bacteroidetes KMM 3947 
prokMSA_id:86570 Bacteroidetes KMM 3903 
prokMSA_id:89246 Cytophaga sp. GE04 AY317149
2.15.1.3.13.5977 OTU 1 seq
prokMSA_id:20776 Bacteroidetes clone BIvi22
2.15.1.3.13.6000 OTU 1 seq
prokMSA_id:2403 ACAM 210
2.15.1.3.13.6001 OTU 1 seq
prokMSA_id:2404 str. IC166
2.15.1.3.13.6002 OTU 1 seq
prokMSA_id:2405 clone BURTON-20
2.15.1.3.13.6004 OTU 1 seq
prokMSA_id:2406 str. QSSC1-18
2.15.1.3.13.6129 OTU 2 seqs
prokMSA_id:39004 Arenibacter latericius KMM 426T 
prokMSA_id:84611 Arenibacter sp. KMM 3941 
2.15.1.3.13.6140 OTU 1 seq
prokMSA_id:28646 CFB group MERTZ_0CM_248 
2.15.1.3.13.6149 OTU 1 seq
prokMSA_id:50504 Marine CFB-group S3 
2.15.1.3.13.6161 OTU 3 seqs
prokMSA_id:34151 clone 4-Org1-38 
prokMSA_id:79592 Vladibacter vitellinus 
prokMSA_id:93854 Aequorivita sp. 'BSD S2 02' AY259510
2.15.1.3.13.6310 OTU 1 seq
prokMSA_id:70274 Zobellia galactanovora 
2.15.1.3.14 PSF.TORQUIS_SUBGROUP 56 seqs
2.15.1.3.14.5335 OTU 2 seqs
prokMSA_id:2419 Psychroflexus torquis str. 651 ACAM 623
prokMSA_id:2421 Psychroflexus torquis ACAM 627
2.15.1.3.14.5397 OTU 2 seqs
prokMSA_id:27823 Cytophaga sp. G22 
prokMSA_id:71623 Flavobacterium sp. V4.BE.50 AJ244690
2.15.1.3.14.5404 OTU 8 seqs
prokMSA_id:2426 Cytophaga latercula M58769
prokMSA_id:2430 Cytophaga latercula str. Lewin SIO-1 ATCC 23177 . D12665
prokMSA_id:44430 CFB group clone MERTZ_0CM_94 AF425755
prokMSA_id:61118 Cf. Cytophaga sp. MGP-28/AN2 AF530141
prokMSA_id:67317 Flavobacteriaceae str. SW334 
prokMSA_id:67318 Flavobacteriaceae str. SW152 
prokMSA_id:67319 Flavobacteriaceae str. SW062 
prokMSA_id:67320 Flavobacteriaceae str. SW058 
2.15.1.3.14.5407 OTU 1 seq
prokMSA_id:16835 clone CD2D6 
2.15.1.3.14.5430 OTU 1 seq
prokMSA_id:24630 marine strain:GY12
2.15.1.3.14.5431 OTU 1 seq
prokMSA_id:46475 Cytophaga sp. KT0803 
2.15.1.3.14.5436 OTU 4 seqs
prokMSA_id:80029 Arctic sea ice ARK9985 
prokMSA_id:80722 Arctic sea ice ARK10004 
prokMSA_id:80782 Arctic sea ice ARK10129 
prokMSA_id:80936 Arctic sea ice ARK10138 
2.15.1.3.14.5473 OTU 3 seqs
prokMSA_id:74154 Flavobacteriaceae str. SW256 
prokMSA_id:85471 Bacteroidetes R43 
prokMSA_id:88683 Flavobacteriaceae G812M2 AY298788
2.15.1.3.14.5598 OTU 3 seqs
prokMSA_id:61975 Flavobacterium sp. V4.MO.31 
prokMSA_id:61980 Flavobacterium sp. V4.BO.21 
prokMSA_id:70361 Flavobacterium sp. V4.ME.09 marine isolate
2.15.1.3.14.5697 OTU 1 seq
prokMSA_id:49407 Cytophaga sp. 41-DBG2 
2.15.1.3.14.5727 OTU 5 seqs
prokMSA_id:2424 clone ORGANIC-6. AF142908
prokMSA_id:60400 Psychroflexus sp. LA1 
prokMSA_id:62484 CFB group clone LA1-A3N AF513956
prokMSA_id:62485 Flavobacteriaceae clone LA1-B21N AF513959
prokMSA_id:62486 Flavobacteriaceae clone LAS-B39N AF513958
2.15.1.3.14.5801 OTU 5 seqs
prokMSA_id:23725 Flavobacterium sp. AS-40 
prokMSA_id:46941 Muricauda ruestringensis 
prokMSA_id:51895 Flavobacterium sp. 7BT 
prokMSA_id:60401 Flavobacteriaceae LA8 
prokMSA_id:70926 Cytophaga sp. MBIC04684 
2.15.1.3.14.5859 OTU 1 seq
prokMSA_id:22547 Cytophagales CE55 
2.15.1.3.14.5904 OTU 4 seqs
prokMSA_id:79692 Arctic sea ice ARK10255 
prokMSA_id:80980 Arctic sea ice ARK10063 
prokMSA_id:81123 Psychroflexus torquis ANT9232b 
prokMSA_id:81527 Psychroflexus torquis strain ANT9268 
2.15.1.3.14.5958 OTU 1 seq
prokMSA_id:61974 Flavobacterium sp. V4.BS.09 marine isolate
2.15.1.3.14.5967 OTU 1 seq
prokMSA_id:25633 antarctic soil clone bh2.57 
2.15.1.3.14.5981 OTU 1 seq
prokMSA_id:29202 TAYNAYA-7 
2.15.1.3.14.6023 OTU 1 seq
prokMSA_id:35551 A16s 
2.15.1.3.14.6028 OTU 1 seq
prokMSA_id:2411 Flavobacterium salegens DSM 5424
2.15.1.3.14.6040 OTU 1 seq
prokMSA_id:2413 str. IC148
2.15.1.3.14.6151 OTU 1 seq
prokMSA_id:26072 Cytophaga sp. B12 
2.15.1.3.14.6256 OTU 1 seq
prokMSA_id:41855 AG 
2.15.1.3.14.6258 OTU 1 seq
prokMSA_id:42542 Marine BBFL7 
2.15.1.3.14.6296 OTU 1 seq
prokMSA_id:48628 CFB group kpc113rc 
2.15.1.3.14.6321 OTU 5 seqs
prokMSA_id:2427 Cytophaga sp. str. J18-M01
prokMSA_id:2428 Cytophaga sp. str. AA8-2. AB017047
prokMSA_id:2429 Cytophaga sp. str. AA8-3. AB017048
prokMSA_id:70738 Marine ALUS253_6 
prokMSA_id:79767 Kordia algicida 
2.15.1.3.15 PSH.BURTONENSIS_SUBGROUP 64 seqs
2.15.1.3.15.5252 OTU 1 seq
prokMSA_id:35713 Saltmarsh clone LCP-72 
2.15.1.3.15.5267 OTU 1 seq
prokMSA_id:56043 CFB group clone AEGEAN_179 
2.15.1.3.15.5268 OTU 1 seq
prokMSA_id:27314 Gelidibacter McMurdo.124 
2.15.1.3.15.5311 OTU 1 seq
prokMSA_id:32923 CFB group clone CD3D3 
2.15.1.3.15.5322 OTU 1 seq
prokMSA_id:79594 clone ZA3907c 
2.15.1.3.15.5330 OTU 1 seq
prokMSA_id:74645 flexibacterium Sva0755 
2.15.1.3.15.5396 OTU 1 seq
prokMSA_id:73211 Marine ATAM173a_3 
2.15.1.3.15.5428 OTU 1 seq
prokMSA_id:28913 SIC.B9002 
2.15.1.3.15.5442 OTU 1 seq
prokMSA_id:22322 clone KS66 
2.15.1.3.15.5464 OTU 1 seq
prokMSA_id:50817 Flavobacteriaceae clone GOBB3-CL282 
2.15.1.3.15.5488 OTU 1 seq
prokMSA_id:20283 BURTON-50 
2.15.1.3.15.5517 OTU 1 seq
prokMSA_id:26631 Gelidibacter sp. QSSC5-7 
2.15.1.3.15.5518 OTU 1 seq
prokMSA_id:2447 clone BURTON-52
2.15.1.3.15.5521 OTU 1 seq
prokMSA_id:72771 Flavobacteriaceae str. SW269 
2.15.1.3.15.5548 OTU 1 seq
prokMSA_id:2452 str. SW17
2.15.1.3.15.5550 OTU 1 seq
prokMSA_id:49506 Marine MBIC1357 strain:MBIC1357
2.15.1.3.15.5559 OTU 1 seq
prokMSA_id:2460 clone BURTON-32
2.15.1.3.15.5561 OTU 1 seq
prokMSA_id:2461 clone BURTON-13
2.15.1.3.15.5570 OTU 1 seq
prokMSA_id:2462 Flavobacterium 5N-3 str. 5N-3
2.15.1.3.15.5571 OTU 1 seq
prokMSA_id:2463 Cytophaga sp. str. BD2-17
2.15.1.3.15.5589 OTU 1 seq
prokMSA_id:78012 clone 2112 
2.15.1.3.15.5591 OTU 1 seq
prokMSA_id:36868 Cytophagales Arctic97A-14 
2.15.1.3.15.5636 OTU 3 seqs
prokMSA_id:2438 Psychroserpens burtonensis ACAM 188
prokMSA_id:2445 Psychroserpens burtonensis ACAM 167
prokMSA_id:2446 Psychroserpens burtonensis ACAM 181
2.15.1.3.15.5657 OTU 1 seq
prokMSA_id:18364 Cytophagales Arctic97A-13 
2.15.1.3.15.5662 OTU 3 seqs
prokMSA_id:18627 strain R7695 AJ278780
prokMSA_id:25304 Km5 AF367846
prokMSA_id:26032 clone CTD28B 
2.15.1.3.15.5688 OTU 1 seq
prokMSA_id:86531 Bacteroidetes KMM 3912 
2.15.1.3.15.5793 OTU 3 seqs
prokMSA_id:22447 Cytophaga sp. KT11ds2 
prokMSA_id:61968 Flavobacterium sp. V4.MS.12 
prokMSA_id:85151 Cytophaga sp. 4301-10/1 isolate 4301-10/1
2.15.1.3.15.5838 OTU 3 seqs
prokMSA_id:2443 Gelidibacter algens str. C8ST5 ACAM 536
prokMSA_id:2444 Gelidibacter algens str. A296 ACAM 551
prokMSA_id:17502 Gelidibacter algens ACAM 550 
2.15.1.3.15.5896 OTU 2 seqs
prokMSA_id:60625 CFB group clone AEGEAN_129 
prokMSA_id:60635 CFB group clone AEGEAN_136 
2.15.1.3.15.5903 OTU 1 seq
prokMSA_id:68987 Cytophagales MB11E04 ; tRNA-Ile and tRNA-Ala genes complete 
2.15.1.3.15.5914 OTU 13 seqs
prokMSA_id:21203 Gelidibacter mesophilus strain 2SM28 AJ344134
prokMSA_id:25577 Gelidibacter mesophilus strain 2SM29T AJ344133
prokMSA_id:61113 Cf. Cytophaga sp. MGP-67 
prokMSA_id:79768 Bacteroidetes KMM 3901 
prokMSA_id:79974 clone ARKIA-137 
prokMSA_id:80530 Arctic sea ice ARK10267 
prokMSA_id:81005 Arctic sea ice ARK10217 AF468427
prokMSA_id:81008 Arctic sea ice associated ARK10144 
prokMSA_id:81033 Psychroserpens sp. ARK10236 AY167341
prokMSA_id:81654 clone KD1-108 AY218549
prokMSA_id:82874 Bacteroidetes E42 
prokMSA_id:83782 Pseudocytophaga algae KMM 3557 
prokMSA_id:93315 Gelidibacter sp. 'BSD S1 18' AY259506
2.15.1.3.15.5953 OTU 1 seq
prokMSA_id:80559 clone ARKDMS-33 
2.15.1.3.15.5992 OTU 2 seqs
prokMSA_id:24934 Cytophaga marinoflava 
prokMSA_id:82233 Cytophaga marinoflava strain ANT9103 
2.15.1.3.15.6044 OTU 1 seq
prokMSA_id:85666 Bacteroidetes clone 2D9 
2.15.1.3.15.6052 OTU 1 seq
prokMSA_id:2450 marine snow associated clone agg13
2.15.1.3.15.6093 OTU 1 seq
prokMSA_id:17872 marine ZD0203 
2.15.1.3.15.6208 OTU 1 seq
prokMSA_id:67313 Flavobacteriaceae str. SW325 
2.15.1.3.15.6221 OTU 1 seq
prokMSA_id:34569 Cytophagales Arctic96AD-4 
2.15.1.3.15.6241 OTU 2 seqs
prokMSA_id:70870 Abyssal strain AIII4 AF254114
prokMSA_id:71563 Abyssal strain AII3 
2.15.1.3.15.6242 OTU 1 seq
prokMSA_id:46707 Psychroserpens aff. burtonensis 
2.15.1.3.15.6269 OTU 1 seq
prokMSA_id:61189 clone UC1 
2.15.1.3.16 ENVIRONMENTAL_CLONE_FL7_SUBGROUP 7 seqs
2.15.1.3.16.5757 OTU 1 seq
prokMSA_id:51701 Cytophagales Arctic96B-24 
2.15.1.3.16.6104 OTU 3 seqs
prokMSA_id:85631 Bacteroidetes clone CF20 
prokMSA_id:86070 Bacteroidetes clone CF91 
prokMSA_id:86177 Bacteroidetes clone CF6 
2.15.1.3.16.6142 OTU 3 seqs
prokMSA_id:26293 CS_B009 
prokMSA_id:77994 Cytophagales clone Hyd24-17
prokMSA_id:78061 Cytophagales clone Hyd24-39
2.15.1.4 CYTOPHAGA_GROUP_II 30 seqs
2.15.1.4.5257 OTU 1 seq
prokMSA_id:80463 clone KD3-67 
2.15.1.4.5309 OTU 1 seq
prokMSA_id:71827 clone 33-PA63B98 
2.15.1.4.5313 OTU 1 seq
prokMSA_id:28458 CFB group MERTZ_2CM_101 
2.15.1.4.5315 OTU 1 seq
prokMSA_id:66632 Cytophagaceae clone 1-13 
2.15.1.4.5355 OTU 1 seq
prokMSA_id:66951 clone SHA-5
2.15.1.4.5356 OTU 1 seq
prokMSA_id:77203 flavobacterium sp. clone JG37-AG-150
2.15.1.4.5481 OTU 1 seq
prokMSA_id:77721 Cytophagales clone Hyd89-72
2.15.1.4.5500 OTU 1 seq
prokMSA_id:78229 clone Hyd24-66
2.15.1.4.5583 OTU 1 seq
prokMSA_id:2471 clone BURTON-31
2.15.1.4.5586 OTU 1 seq
prokMSA_id:2477 str. Koll-22
2.15.1.4.5585 OTU 1 seq
prokMSA_id:2473 clone BURTON-2
2.15.1.4.5587 OTU 1 seq
prokMSA_id:2478 Cytophaga sp. str. JTB250
2.15.1.4.5638 OTU 1 seq
prokMSA_id:62694 Bacteroidetes clone ML635J-44 
2.15.1.4.5637 OTU 1 seq
prokMSA_id:77100 clone BLIB-51 
2.15.1.4.5649 OTU 1 seq
prokMSA_id:22127 CFB group kpj60f 
2.15.1.4.5671 OTU 1 seq
prokMSA_id:85577 Bacteroidetes clone CF96 
2.15.1.4.5678 OTU 1 seq
prokMSA_id:36986 MERTZ_2CM_1 
2.15.1.4.5703 OTU 1 seq
prokMSA_id:59793 clone BB2_87 
2.15.1.4.5707 OTU 1 seq
prokMSA_id:45081 Bacteroidetes clone ST-12K19
2.15.1.4.5784 OTU 1 seq
prokMSA_id:83084 rumen clone BS11 
2.15.1.4.5787 OTU 1 seq
prokMSA_id:62699 Bacteroidetes clone ML635J-1 
2.15.1.4.5785 OTU 2 seqs
prokMSA_id:62696 Bacteroidetes clone ML635J-56 AF507862
prokMSA_id:62698 Bacteroidetes clone ML623J-20 
2.15.1.4.5957 OTU 1 seq
prokMSA_id:57464 CFB group clone P. palm C/A 20
2.15.1.4.5988 OTU 1 seq
prokMSA_id:42624 GR-WP33-68 clone GR-WP33-68
2.15.1.4.6082 OTU 1 seq
prokMSA_id:33969 equine intestinal clone:YT26
2.15.1.4.6099 OTU 1 seq
prokMSA_id:22467 CS_B047 
2.15.1.4.6144 OTU 1 seq
prokMSA_id:28868 clone BIfcii9
2.15.1.4.6285 OTU 1 seq
prokMSA_id:25565 CFB group MERTZ_0CM_154 
2.15.1.4.6324 OTU 1 seq
prokMSA_id:82061 clone KM02 
2.15.2 SPHINGOBACTERIUM_GROUP 86 seqs
2.15.2.5250 OTU 1 seq
prokMSA_id:42382 Pedobacter saltans strain DSM 12145T
2.15.2.5274 OTU 1 seq
prokMSA_id:17550 Wuba47 
2.15.2.5279 OTU 1 seq
prokMSA_id:19131 Bacteroidetes clone BIsii5
2.15.2.5278 OTU 1 seq
prokMSA_id:22691 Sphingobacterium faecium strain DSM 11690T
2.15.2.5337 OTU 1 seq
prokMSA_id:37703 GR-Sh2-12 clone GR-Sh2-12
2.15.2.5402 OTU 1 seq
prokMSA_id:71779 CFB group clone TAF-A147 
2.15.2.5432 OTU 1 seq
prokMSA_id:46477 Flavobacterium mizutaii strain DSM 11724T
2.15.2.5444 OTU 1 seq
prokMSA_id:67493 Sphingobacteriaceae str. EP211 
2.15.2.5459 OTU 2 seqs
prokMSA_id:78203 CFB group clone:APe2_8
prokMSA_id:93552 Pedobacter sp. An13 isolate An13 AJ551152
2.15.2.5492 OTU 1 seq
prokMSA_id:68384 Sphingobacterium sp. HC-6155 
2.15.2.5513 OTU 2 seqs
prokMSA_id:26222 Pedobacter sp. LMG 10351 
prokMSA_id:26343 Flavobacterium-like sp. oral clone AZ123 AF385549
2.15.2.5519 OTU 1 seq
prokMSA_id:65554 yard-trimming-compost clone S-44 
2.15.2.5541 OTU 1 seq
prokMSA_id:50974 KF-Gitt2-34 
2.15.2.5582 OTU 1 seq
prokMSA_id:40435 Sphingobacterium sp. S3 
2.15.2.5601 OTU 6 seqs
prokMSA_id:2491 Sphingobacterium multivorum str. OM-A8. AB020205
prokMSA_id:36348 Sphingobacterium sp. clone:OS1L-21
prokMSA_id:63191 Sphingobacterium sp. p11E AJ496037
prokMSA_id:77995 Sphingobacterium sp. TUT1026 
prokMSA_id:79272 Sphingobacterium multivorum 
prokMSA_id:79519 Sphingobacterium multivorum 
2.15.2.5605 OTU 1 seq
prokMSA_id:77459 Sphingobacterium sp. SAFR-022 
2.15.2.5611 OTU 1 seq
prokMSA_id:19806 CFB group clone SM1C08 
2.15.2.5613 OTU 1 seq
prokMSA_id:2485 str. QSSC5-1
2.15.2.5614 OTU 1 seq
prokMSA_id:2486 str. MBIC4147
2.15.2.5616 OTU 1 seq
prokMSA_id:2488 clone 49511
2.15.2.5633 OTU 1 seq
prokMSA_id:2497 clone BURTON-43
2.15.2.5648 OTU 3 seqs
prokMSA_id:2490 Sphingobacterium thalpophilum M58779
prokMSA_id:2499 Sphingobacterium thalpophilum
prokMSA_id:26308 Sphingobacterium thalpophilum strain DSM 11723T AJ438177
2.15.2.5658 OTU 1 seq
prokMSA_id:33633 Agricultural soil clone SC-I-70 
2.15.2.5674 OTU 1 seq
prokMSA_id:74255 clone BIsi7
2.15.2.5699 OTU 1 seq
prokMSA_id:47809 Pedobacter sp. KP-2 
2.15.2.5747 OTU 3 seqs
prokMSA_id:33665 Flavobacterium sp. jshs26 
prokMSA_id:37473 Potato plant root clone RC-III-9 AJ252710
prokMSA_id:47105 Flavobacterium sp. C204B AF375835
2.15.2.5792 OTU 1 seq
prokMSA_id:65426 clone 47 
2.15.2.5840 OTU 1 seq
prokMSA_id:31489 rape rhizosphere wr0012 
2.15.2.5858 OTU 1 seq
prokMSA_id:24148 Flavobacterium sp. 36 
2.15.2.5878 OTU 3 seqs
prokMSA_id:2484 Sphingobacterium OM-E81 str. OM-E81
prokMSA_id:29206 Pedobacter piscium strain DSM 11725T
prokMSA_id:39088 Pedobacter cryoconitis strain DSM 14825T
2.15.2.5913 OTU 17 seqs
prokMSA_id:20232 Pedobacter sp. LMG 10342 AF329966
prokMSA_id:36195 Pedobacter sp. LMG 10354 AF329965
prokMSA_id:36521 Pedobacter sp. LMG 9527 AF329964
prokMSA_id:44075 Bacteroidetes clone BIji46
prokMSA_id:46956 Sphingobacterium-like sp. PC1.9 strain PC1.9 X89912
prokMSA_id:60340 clone Glu58 
prokMSA_id:67490 Sphingobacteriaceae str. EP316 
prokMSA_id:70559 Pedobacter sp. oral clone AV100 AF385531
prokMSA_id:75974 Flavobacterium sp. MTN11 
prokMSA_id:81220 clone KD5-103 
prokMSA_id:82880 Cytophagales clone TLT005 AY250892
prokMSA_id:85313 Cytophagales clone BPU107 AY250857
prokMSA_id:91125 Bacteroidetes LC9 AY337604
prokMSA_id:91480 Bacteroidetes EC2 AY337599
prokMSA_id:95052 Pedobacter sp. HHS22 strain HHS22 AJ583425
prokMSA_id:96908 Bacteroidetes clone SW35 AJ575721
prokMSA_id:98093 Bacteroidetes clone SW66 AJ575725
2.15.2.6136 OTU 1 seq
prokMSA_id:31688 Bacteroidetes clone BIti3
2.15.2.6158 OTU 1 seq
prokMSA_id:59539 CAGY10 strain CAGY10 
2.15.2.6168 OTU 1 seq
prokMSA_id:83335 clone TLM11/TLMdgge04 
2.15.2.6174 OTU 1 seq
prokMSA_id:43436 Bacteroidetes clone BIti35
2.15.2.6177 OTU 1 seq
prokMSA_id:26452 clone Ebpr7 
2.15.2.6185 OTU 1 seq
prokMSA_id:66760 Sphingobacterium spiritivorum strain DSM 2582
2.15.2.6188 OTU 2 seqs
prokMSA_id:46199 CFB group clone TAF-A198 
prokMSA_id:73110 CFB group clone TAF-A194 
2.15.2.6191 OTU 1 seq
prokMSA_id:30987 CFB group clone pA47 
2.15.2.6222 OTU 1 seq
prokMSA_id:74412 CFB group clone TAF-A131 
2.15.2.6231 OTU 1 seq
prokMSA_id:82023 clone KD1-39 
2.15.2.6247 OTU 4 seqs
prokMSA_id:2483 Bacteroides b-17BO str. b-17BO. AF070444
prokMSA_id:28059 Tuber borchii symbiont b-Z43 
prokMSA_id:51029 Tuber borchii symbiont b-10RA 
prokMSA_id:51168 Tuber borchii symbiont b-1BO AF233293
2.15.2.6250 OTU 1 seq
prokMSA_id:56235 Flexibacter canadensis strain:IFO 15130
2.15.2.6273 OTU 1 seq
prokMSA_id:52137 Rhizosphere soil isolate RSI-35 
2.15.2.6272 OTU 6 seqs
prokMSA_id:2481 Pedobacter heparinus str. HIM 762-3 ATCC 13125
prokMSA_id:28476 clone GL184.1 
prokMSA_id:39221 clone GL182.29 
prokMSA_id:40607 Pedobacter africanus strain DSM 12126T
prokMSA_id:52839 Pedobacter heparinus strain DSM 2366T
prokMSA_id:68958 clone GL182.33 
2.15.2.6289 OTU 1 seq
prokMSA_id:32790 CFB group MERTZ_0CM_182 
2.15.2.6303 OTU 1 seq
prokMSA_id:85393 clone TLM10/TLMdgge01 
2.15.2.6314 OTU 1 seq
prokMSA_id:43819 Bacteroidetes clone BIsi29
2.15.4 LEWINELLA_GROUP 158 seqs
2.15.4.2 FLX.SANCTI_SUBGROUP 103 seqs
2.15.4.2.5254 OTU 1 seq
prokMSA_id:22060 clone Ebpr5 
2.15.4.2.5260 OTU 1 seq
prokMSA_id:81789 clone KD6-102 
2.15.4.2.5266 OTU 1 seq
prokMSA_id:27437 #0319-2D13 
2.15.4.2.5281 OTU 1 seq
prokMSA_id:2521 Chitinophaga pinensis ACM 2034
2.15.4.2.5283 OTU 1 seq
prokMSA_id:70346 Cytophagales clone 09 
2.15.4.2.5284 OTU 1 seq
prokMSA_id:2522 unnamed organism
2.15.4.2.5288 OTU 1 seq
prokMSA_id:2523 unnamed organism
2.15.4.2.5289 OTU 1 seq
prokMSA_id:17675 clone BIjii2
2.15.4.2.5314 OTU 1 seq
prokMSA_id:52719 FukuN24 
2.15.4.2.5334 OTU 1 seq
prokMSA_id:81227 clone KD3-58 
2.15.4.2.5354 OTU 3 seqs
prokMSA_id:22940 FukuN21 
prokMSA_id:50093 isolate AH47 
prokMSA_id:72978 Flexibacter sp. CF 1 
2.15.4.2.5389 OTU 1 seq
prokMSA_id:82843 Flexibacter sp. MDA2495 
2.15.4.2.5387 OTU 1 seq
prokMSA_id:16825 FukuN47 
2.15.4.2.5409 OTU 1 seq
prokMSA_id:43204 clone Ebpr2 
2.15.4.2.5449 OTU 1 seq
prokMSA_id:37034 Bacteroidetes clone BIfcii37
2.15.4.2.5463 OTU 2 seqs
prokMSA_id:58621 Flexibacter sancti strain:IFO 16034
prokMSA_id:58639 Flexibacter filiformis strain:IFO 15056
2.15.4.2.5491 OTU 1 seq
prokMSA_id:50373 GKS2-106 
2.15.4.2.5564 OTU 1 seq
prokMSA_id:23809 clone Ebpr3 
2.15.4.2.5567 OTU 1 seq
prokMSA_id:55504 CS57 
2.15.4.2.5576 OTU 1 seq
prokMSA_id:20042 PHOS-HE31 
2.15.4.2.5581 OTU 1 seq
prokMSA_id:31613 Agricultural soil clone SC-I-12 
2.15.4.2.5619 OTU 1 seq
prokMSA_id:81764 Bacteroidetes clone VC10 
2.15.4.2.5640 OTU 1 seq
prokMSA_id:2519 Flexibacter filiformis str. FX e 1 ATCC 29495
2.15.4.2.5642 OTU 1 seq
prokMSA_id:81937 clone KD8-73 
2.15.4.2.5669 OTU 4 seqs
prokMSA_id:25133 clone GL182.1 
prokMSA_id:29854 clone GL182.3 
prokMSA_id:50765 AT425_EubA6 
prokMSA_id:68460 Symbiont cf. Flavobacterium of Acromyrmex octospinosus 
2.15.4.2.5722 OTU 1 seq
prokMSA_id:31329 CFB group clone TAF-B76 
2.15.4.2.5772 OTU 1 seq
prokMSA_id:82403 clone KD2-128 
2.15.4.2.5832 OTU 1 seq
prokMSA_id:58374 Haliscomenobacter sp. clone SBRT303 
2.15.4.2.5857 OTU 1 seq
prokMSA_id:2508 str. NIH
2.15.4.2.5872 OTU 1 seq
prokMSA_id:46428 Agricultural soil clone SC-I-91 
2.15.4.2.5884 OTU 6 seqs
prokMSA_id:25213 rape rhizosphere wr0053 AJ295507
prokMSA_id:25227 rape rhizosphere wr0060 
prokMSA_id:35540 rape rhizosphere wr0011 AJ295472
prokMSA_id:37328 rape rhizosphere wr0003 AJ295464
prokMSA_id:39882 rape rhizosphere wr0002 AJ295463
prokMSA_id:42289 rape rhizosphere wr0086 AJ295528
2.15.4.2.5888 OTU 33 seqs
prokMSA_id:39496 Bacteroidetes clone BIjiii34
prokMSA_id:74932 isolate ENV-MO-007 AF538339
prokMSA_id:76380 isolate ENV-MO-004 AF538336
prokMSA_id:79291 clone KD6-86 
prokMSA_id:80170 Bacteroidetes clone W3-1E AY192292
prokMSA_id:81076 clone KD8-102 
prokMSA_id:81081 clone KD3-74 
prokMSA_id:81165 clone KD3-83 
prokMSA_id:81265 clone KD8-106 AY218679
prokMSA_id:81417 clone KD4-68 
prokMSA_id:81462 clone KD8-75 
prokMSA_id:81521 clone KD4-25 
prokMSA_id:81628 clone KD3-77 AY218616
prokMSA_id:81668 clone KD4-19 
prokMSA_id:81734 clone KD2-72 
prokMSA_id:81785 clone KD2-78 
prokMSA_id:81804 clone KD9-156 
prokMSA_id:81845 clone KD3-81 
prokMSA_id:81847 clone KD6-82 
prokMSA_id:81875 clone KD6-125 
prokMSA_id:81935 clone KD7-36 AY218708
prokMSA_id:82060 clone KD6-69 
prokMSA_id:82091 clone KD2-41 
prokMSA_id:82095 clone KD6-47 AY218761
prokMSA_id:82129 clone KD5-2 
prokMSA_id:82169 clone KD9-68 
prokMSA_id:82204 clone KD4-13 
prokMSA_id:82231 clone KD8-115 
prokMSA_id:82277 clone KD7-116 
prokMSA_id:82316 clone KD9-169 
prokMSA_id:82360 clone KD6-136 
prokMSA_id:84350 clone D143 AY274148
prokMSA_id:85906 clone D124 AY274132
2.15.4.2.5925 OTU 1 seq
prokMSA_id:16356 earthworm cast clone C065 
2.15.4.2.5948 OTU 1 seq
prokMSA_id:42740 soil clone 760-2 
2.15.4.2.5970 OTU 1 seq
prokMSA_id:40073 FukuS59 
2.15.4.2.5987 OTU 1 seq
prokMSA_id:29927 Rhizosphere soil clone RSC-II-81 
2.15.4.2.6003 OTU 1 seq
prokMSA_id:47936 Flavobacterium-like sp. oral clone AZ105 
2.15.4.2.6020 OTU 1 seq
prokMSA_id:81900 clone KD5-90 
2.15.4.2.6049 OTU 1 seq
prokMSA_id:59355 clone HP1B19 
2.15.4.2.6050 OTU 1 seq
prokMSA_id:62965 clone LPB08 
2.15.4.2.6111 OTU 2 seqs
prokMSA_id:27005 FukuN23 
prokMSA_id:96745 Bacteroidetes clone SW56 AJ575723
2.15.4.2.6123 OTU 1 seq
prokMSA_id:58633 Flexibacter japonensis strain:IFO 16041
2.15.4.2.6130 OTU 1 seq
prokMSA_id:47447 Potato plant root clone RC-III-62 
2.15.4.2.6143 OTU 1 seq
prokMSA_id:85194 clone TLM09/TLMdgge12a 
2.15.4.2.6148 OTU 1 seq
prokMSA_id:47339 clone Ebpr1 
2.15.4.2.6150 OTU 1 seq
prokMSA_id:71851 Flexibacter cf. sancti 
2.15.4.2.6167 OTU 1 seq
prokMSA_id:19885 Metal-contaminated soil clone K20-37 
2.15.4.2.6171 OTU 1 seq
prokMSA_id:32581 Dipareforma spartinacae 
2.15.4.2.6196 OTU 1 seq
prokMSA_id:26459 Bacteroidetes clone BIti15
2.15.4.2.6243 OTU 1 seq
prokMSA_id:42738 Flexibacter sp. clone:TSL-25
2.15.4.2.6244 OTU 1 seq
prokMSA_id:61843 Bacteroidetes clone CLi112 
2.15.4.2.6245 OTU 1 seq
prokMSA_id:31404 FukuN54 
2.15.4.2.6267 OTU 4 seqs
prokMSA_id:70436 Cilia-associated respiratory 96-1590 
prokMSA_id:71059 Cilia-associated respiratory 246-57 AF316116
prokMSA_id:71156 Cilia-associated respiratory 95-15405 AF316117
prokMSA_id:71903 Cilia-associated respiratory 243-54 AF316115
2.15.4.2.6281 OTU 1 seq
prokMSA_id:34759 clone cvf122192 
2.15.4.2.6320 OTU 1 seq
prokMSA_id:18670 clone Tc12 
2.15.4.2.6325 OTU 1 seq
prokMSA_id:2512 Flavobacterium ferrugineum ATCC 13524
2.15.4.3 LEW.NIGRICANS_SUBGROUP 55 seqs
2.15.4.3.5310 OTU 1 seq
prokMSA_id:70292 CFB group clone TAF-B80 
2.15.4.3.5328 OTU 1 seq
prokMSA_id:2538 clone MK04
2.15.4.3.5327 OTU 1 seq
prokMSA_id:2536 clone MK07
2.15.4.3.5344 OTU 1 seq
prokMSA_id:2540 Cytophaga sp. str. JTB251
2.15.4.3.5347 OTU 1 seq
prokMSA_id:73931 GKS2-217 
2.15.4.3.5348 OTU 1 seq
prokMSA_id:2546 Lewinella nigricans str. SS-2 ATCC 23147
2.15.4.3.5359 OTU 1 seq
prokMSA_id:2549 clone QSSC9L-2
2.15.4.3.5358 OTU 1 seq
prokMSA_id:2548 clone EKHO-12
2.15.4.3.5375 OTU 1 seq
prokMSA_id:2550 Lewinella cohaerens str. II-2 ATCC 23123
2.15.4.3.5378 OTU 1 seq
prokMSA_id:2551 Lewinella persica str. T-3 ATCC 23167
2.15.4.3.5382 OTU 1 seq
prokMSA_id:2556 clone BURTON-51
2.15.4.3.5381 OTU 1 seq
prokMSA_id:2555 marine snow associated clone agg32
2.15.4.3.5380 OTU 1 seq
prokMSA_id:2554 clone LD1
2.15.4.3.5384 OTU 1 seq
prokMSA_id:2558 clone QSSC9L-1
2.15.4.3.5383 OTU 1 seq
prokMSA_id:2557 clone BURTON-23
2.15.4.3.5466 OTU 1 seq
prokMSA_id:72740 clone KS69 
2.15.4.3.5477 OTU 2 seqs
prokMSA_id:2534 clone MK09
prokMSA_id:2539 clone MK11
2.15.4.3.5497 OTU 2 seqs
prokMSA_id:29244 Saprospira sp. SS95-4 
prokMSA_id:30366 Saprospira sp. SS92-11 
2.15.4.3.5558 OTU 1 seq
prokMSA_id:42683 EKHO-10 
2.15.4.3.5560 OTU 1 seq
prokMSA_id:44289 Marine MSC1 
2.15.4.3.5592 OTU 2 seqs
prokMSA_id:39161 clone Ebpr18 
prokMSA_id:41847 clone Ebpr17 
2.15.4.3.5617 OTU 3 seqs
prokMSA_id:29419 CFB group clone SM2D04 AF445721
prokMSA_id:33230 CFB group clone SM1E03 
prokMSA_id:87377 Bacteroidetes clone FL08B07 AY293499
2.15.4.3.5654 OTU 1 seq
prokMSA_id:63062 Saprospira grandis 
2.15.4.3.5677 OTU 1 seq
prokMSA_id:50627 BA7 
2.15.4.3.5743 OTU 1 seq
prokMSA_id:44087 ACE-3 
2.15.4.3.5798 OTU 1 seq
prokMSA_id:29118 Lewinella ARCTIC.161 
2.15.4.3.5829 OTU 1 seq
prokMSA_id:2563 clone BS2
2.15.4.3.5845 OTU 4 seqs
prokMSA_id:2541 clone LD2
prokMSA_id:2542 clone LD30
prokMSA_id:61777 clone Med0-02
prokMSA_id:71535 clone Urk0-01 AJ416169
2.15.4.3.5853 OTU 1 seq
prokMSA_id:33318 Lewinella SIC.165 
2.15.4.3.5996 OTU 1 seq
prokMSA_id:2535 clone MK24
2.15.4.3.6030 OTU 1 seq
prokMSA_id:27657 CFB group clone SM1A07 
2.15.4.3.6036 OTU 1 seq
prokMSA_id:35871 PHOS-HE35 
2.15.4.3.6051 OTU 1 seq
prokMSA_id:19837 Bacteroidetes clone BIhii16
2.15.4.3.6061 OTU 1 seq
prokMSA_id:52545 Bacteroidetes clone BIjiii32
2.15.4.3.6199 OTU 1 seq
prokMSA_id:27029 PHOS-HE45 
2.15.4.3.6249 OTU 3 seqs
prokMSA_id:2533 Haliscomenobacter hydrossis M58790
prokMSA_id:76801 clone HC-49P 
prokMSA_id:79482 clone csbio160175 
2.15.4.3.6323 OTU 9 seqs
prokMSA_id:2531 Candidatus Magnospira bakii
prokMSA_id:2532 Candidatus Magnospira bakii
prokMSA_id:2559 Candidatus Magnospira bakii
prokMSA_id:2560 Candidatus Magnospira bakii
prokMSA_id:2561 Candidatus Magnospira bakii
prokMSA_id:2562 Candidatus Magnospira bakii
prokMSA_id:21458 Candidatus Magnospira bakii clone BM09 
prokMSA_id:23993 Candidatus Magnospira bakii clone BM6 
prokMSA_id:50421 Candidatus Magnospira bakii clone BM18 
2.15.5 PERSICOBACTER_GROUP 17 seqs
2.15.5.5312 OTU 1 seq
prokMSA_id:44553 clone cvf122070 
2.15.5.5542 OTU 4 seqs
prokMSA_id:66029 Cytophaga sp. I-1787 
prokMSA_id:66030 Cytophaga sp. I-976 AB073594
prokMSA_id:66031 Cytophaga sp. I-482 AB073593
prokMSA_id:70072 Cytophaga sp. I-1789 AB073596
2.15.5.5682 OTU 1 seq
prokMSA_id:66996 Reichenbachia agaroperforata 
2.15.5.5740 OTU 1 seq
prokMSA_id:83725 Cytophagales clone FBP292 
2.15.5.5839 OTU 1 seq
prokMSA_id:2569 Flexithrix dorotheae ATCC 23163
2.15.5.5866 OTU 1 seq
prokMSA_id:2574 Taxeobacter ocellatus str. Myx2105
2.15.5.5869 OTU 1 seq
prokMSA_id:2575 Taxeobacter ocellatus str. Txo1
2.15.5.5870 OTU 1 seq
prokMSA_id:2577 Cytophaga sp. str. JTB248
2.15.5.5951 OTU 3 seqs
prokMSA_id:79775 CFB group clone ML615J-4 AF449785
prokMSA_id:80577 CFB group clone ML513M-12 
prokMSA_id:80853 CFB group clone ML615J-16 AF449783
2.15.5.5999 OTU 1 seq
prokMSA_id:41046 clone cvf122197 
2.15.5.6055 OTU 1 seq
prokMSA_id:65682 soil clone C0108 
2.15.5.6084 OTU 1 seq
prokMSA_id:58610 Microscilla arenaria strain:IFO 15982
2.15.6 CY.AURANTIACA_GROUP 177 seqs
2.15.6.5286 OTU 1 seq
prokMSA_id:29165 Unknown organism 0411
2.15.6.5304 OTU 1 seq
prokMSA_id:25963 Acanthamoeba sp. TUMSJ-321 
2.15.6.5305 OTU 3 seqs
prokMSA_id:2614 IFAM 2074
prokMSA_id:2615 IFAM 3211
prokMSA_id:2618 IFAM 3359
2.15.6.5307 OTU 1 seq
prokMSA_id:58606 Microscilla sericea strain:IFO 16561
2.15.6.5308 OTU 1 seq
prokMSA_id:74081 CFB group clone TAF-A99 
2.15.6.5321 OTU 7 seqs
prokMSA_id:35716 isolate AH57 
prokMSA_id:67489 Flectobacillus sp. EP293 
prokMSA_id:72722 Flectobacillus sp. Isolate GWF23A AJ011696
prokMSA_id:77370 Flectobacillus speluncae strain GWF20B 
prokMSA_id:77393 Arcocella aquatica strain NO-502T
prokMSA_id:77560 Flectobacillus speluncae strain GWF20C 
prokMSA_id:91727 H22 AY345549
2.15.6.5345 OTU 1 seq
prokMSA_id:2601 clone BURTON-24
2.15.6.5346 OTU 1 seq
prokMSA_id:18766 Flexibacter sp. QSSC9L-9 
2.15.6.5357 OTU 1 seq
prokMSA_id:58624 Flexibacter ruber strain:IFO 16677
2.15.6.5364 OTU 6 seqs
prokMSA_id:71214 Cyclobacterium sp. V4.MS.32 
prokMSA_id:80523 Arctic sea ice ARK10280 
prokMSA_id:85114 Antarctic R-9286 strain R-9286
prokMSA_id:93224 Rhodovirga antarctica strain R-10710 AJ577141
prokMSA_id:93561 Rhodovirga antarctica strain R-9286 AJ577267
prokMSA_id:94046 Rhodovirga antarctica strain R-11427 AJ577142
2.15.6.5365 OTU 2 seqs
prokMSA_id:18798 Cytophagales clone PRD01a001B 
prokMSA_id:28897 Cytophagales clone 30 
2.15.6.5368 OTU 2 seqs
prokMSA_id:58616 Flexibacter tractuosus strain:IFO 15989
prokMSA_id:58617 Flexibacter tractuosus strain:IFO 15981
2.15.6.5372 OTU 2 seqs
prokMSA_id:76741 clone HC-2 
prokMSA_id:82467 clone BIOEST-8
2.15.6.5405 OTU 2 seqs
prokMSA_id:42106 MC-2 
prokMSA_id:48801 KEppib35 
2.15.6.5416 OTU 4 seqs
prokMSA_id:82506 Spirosoma escalantus strain HDK691 
prokMSA_id:83668 Spirosoma escalantus strain HDK627 
prokMSA_id:83691 Spirosoma escalantus strain HDK201 
prokMSA_id:85731 Spirosoma linguale 
2.15.6.5520 OTU 2 seqs
prokMSA_id:20292 Hymenobacter sp. clone KL-2-4-9 
prokMSA_id:42223 Hymenobacter sp. clone KL-2-4-2 
2.15.6.5522 OTU 1 seq
prokMSA_id:40349 Hymenobacter sp. clone KL-26-2-11 
2.15.6.5545 OTU 1 seq
prokMSA_id:24449 Hymenobacter group clone KL-37-1-8 
2.15.6.5547 OTU 1 seq
prokMSA_id:66032 Cytophaga sp. T-561 
2.15.6.5566 OTU 1 seq
prokMSA_id:82548 Flexibacteraceae IMSNU 14012 
2.15.6.5595 OTU 1 seq
prokMSA_id:77448 Taxeobacter sp. SAFR-023 
2.15.6.5602 OTU 1 seq
prokMSA_id:59812 clone BB2_75 
2.15.6.5655 OTU 1 seq
prokMSA_id:26841 KEppib45 
2.15.6.5667 OTU 1 seq
prokMSA_id:81798 clone KD6-118 
2.15.6.5701 OTU 1 seq
prokMSA_id:19323 CFB groupbacterium NAC60-3 
2.15.6.5729 OTU 1 seq
prokMSA_id:77550 Taxeobacter sp. SAFR-033 
2.15.6.5744 OTU 1 seq
prokMSA_id:26447 CFB group clone SM1E06 
2.15.6.5748 OTU 1 seq
prokMSA_id:2604 Taxeobacter gelupurpurascens str. Txg1
2.15.6.5751 OTU 1 seq
prokMSA_id:2605 Taxeobacter Txc1 str. Txc1
2.15.6.5754 OTU 1 seq
prokMSA_id:2608 unnamed organism
2.15.6.5755 OTU 1 seq
prokMSA_id:53303 clone KS84 
2.15.6.5775 OTU 1 seq
prokMSA_id:23225 Hymenobacter sp. MJ1 
2.15.6.5773 OTU 1 seq
prokMSA_id:25907 clone cvf122218 
2.15.6.5780 OTU 1 seq
prokMSA_id:36284 Microscilla sp. isolate PRLIST05 
2.15.6.5794 OTU 1 seq
prokMSA_id:2612 clone CLEAR-1
2.15.6.5796 OTU 1 seq
prokMSA_id:74295 CFB group clone TAF-B100 
2.15.6.5799 OTU 1 seq
prokMSA_id:60633 CFB group clone AEGEAN_150 
2.15.6.5805 OTU 1 seq
prokMSA_id:2617 IFAM 3359
2.15.6.5842 OTU 1 seq
prokMSA_id:45409 Agricultural soil isolate SI-11 
2.15.6.5849 OTU 1 seq
prokMSA_id:71338 CFB group clone TAF-A119 
2.15.6.5879 OTU 1 seq
prokMSA_id:19038 Hymenobacter group clone KL-2-5-13 
2.15.6.5881 OTU 1 seq
prokMSA_id:42147 Hailaer soda lake Z3 
2.15.6.5891 OTU 36 seqs
prokMSA_id:17682 Hymenobacter group clone KL-11-1-4 
prokMSA_id:18171 Hymenobacter group clone KL-114-2-8 
prokMSA_id:18440 Hymenobacter group clone KL-13-4-2 
prokMSA_id:18647 Hymenobacter group clone KL-114-2-1 
prokMSA_id:18835 Hymenobacter group clone KL-111-2-4 
prokMSA_id:19707 Hymenobacter group clone KL-114-2-3 
prokMSA_id:21658 Hymenobacter group clone KL-93-1-11 
prokMSA_id:22065 Hymenobacter group clone KL-94-2-7 
prokMSA_id:23697 Hymenobacter group clone KL-48-1-8 
prokMSA_id:24199 Hymenobacter group clone KL-27-1-4 
prokMSA_id:24408 Hymenobacter group clone KL-125-4-4 
prokMSA_id:26934 Hymenobacter group clone KL-114-2-2 
prokMSA_id:27258 Hymenobacter group clone KL-111-2-2 
prokMSA_id:28499 Hymenobacter group clone KL-114-2-5 
prokMSA_id:29431 Hymenobacter group clone KL-26-2-7 
prokMSA_id:29557 Hymenobacter group clone KL-27-1-8 
prokMSA_id:29868 Hymenobacter group clone KL-48-1-3 
prokMSA_id:36763 Hymenobacter group clone KL-2-5-1 
prokMSA_id:37382 Hymenobacter group clone KL-26-2-3 AF408312
prokMSA_id:37430 Hymenobacter group clone KL-26-2-14 
prokMSA_id:38961 Hymenobacter group clone KL-26-2-15 
prokMSA_id:39156 Hymenobacter group clone KL-59-7-4 
prokMSA_id:39638 Hymenobacter group clone KL-94-2-11 
prokMSA_id:39913 Hymenobacter group clone KL-94-2-4 
prokMSA_id:39988 Hymenobacter group clone KL-94-1-4 
prokMSA_id:40455 Hymenobacter group clone KL-125-4-11 
prokMSA_id:42218 Hymenobacter group clone KL-36-1-7 
prokMSA_id:42810 Hymenobacter group clone KL-53-2-5 
prokMSA_id:42815 Hymenobacter group clone KL-111-2-9 
prokMSA_id:45352 Hymenobacter group clone KL-26-2-4 
prokMSA_id:47580 Hymenobacter group clone KL-94-1-6 
prokMSA_id:49913 Hymenobacter group clone KL-94-1-3 
prokMSA_id:50263 Hymenobacter group clone KL-93-1-12 
prokMSA_id:52329 Hymenobacter group clone KL-27-1-9 
prokMSA_id:52380 Hymenobacter group clone KL-59-7-9 
prokMSA_id:71125 Hymenobacter group clone KL-125-4-2 
2.15.6.5902 OTU 5 seqs
prokMSA_id:23691 Hymenobacter group clone KL-94-1-15 
prokMSA_id:36577 Taxeobacter sp. clone KL-59-7-7 
prokMSA_id:39725 Hymenobacter group clone KL-27-1-12 
prokMSA_id:41203 Hymenobacter group clone KL-59-7-8 
prokMSA_id:46108 Taxeobacter sp. clone KL-2-4-3 
2.15.6.5911 OTU 1 seq
prokMSA_id:2587 clone QSSC8L-18
2.15.6.5910 OTU 1 seq
prokMSA_id:2586 str. QSSC1-11
2.15.6.5912 OTU 1 seq
prokMSA_id:2588 Cytophaga sp. str. BD1-27
2.15.6.5936 OTU 1 seq
prokMSA_id:2592 Flectobacillus sp. str. MWH38
2.15.6.5937 OTU 1 seq
prokMSA_id:2593 clone PLY51
2.15.6.5938 OTU 1 seq
prokMSA_id:2595 str. NS114
2.15.6.5939 OTU 1 seq
prokMSA_id:2596 Runella NS12 str. NS12
2.15.6.5944 OTU 1 seq
prokMSA_id:60399 Flexibacter group LA48 
2.15.6.5959 OTU 3 seqs
prokMSA_id:82819 Spirosoma navajo strain HDK666 
prokMSA_id:84249 Spirosoma navajo strain HDK660 
prokMSA_id:85754 Spirosoma navajo strain HDK663 
2.15.6.5962 OTU 1 seq
prokMSA_id:50855 Rhizosphere soil clone RSC-II-76 
2.15.6.5965 OTU 1 seq
prokMSA_id:33872 Endosymbiont of Acanthamoeba sp. Hungarian isolate 
2.15.6.5978 OTU 1 seq
prokMSA_id:38021 CFB group MERTZ_0CM_57 
2.15.6.5984 OTU 1 seq
prokMSA_id:29921 CFB group clone TAF-A28 
2.15.6.5994 OTU 4 seqs
prokMSA_id:41126 Taxeobacter sp. clone KL-2-5-12 
prokMSA_id:70352 Hymenobacter group clone KL-93-1-10 
prokMSA_id:82222 Hymenobacter sp. NS/50 strain NS/50
prokMSA_id:83153 Antarctic R-7572 strain R-7572
2.15.6.6019 OTU 1 seq
prokMSA_id:85985 Flexibacteraceae IMSNU 14013 
2.15.6.6048 OTU 1 seq
prokMSA_id:52858 CFB group clone TAF-A130 
2.15.6.6054 OTU 1 seq
prokMSA_id:49920 PHOS-HE21 
2.15.6.6057 OTU 1 seq
prokMSA_id:79737 clone Bol18 
2.15.6.6056 OTU 1 seq
prokMSA_id:32162 CFB group clone TAF-B75 
2.15.6.6059 OTU 1 seq
prokMSA_id:20151 GKS2-216 
2.15.6.6087 OTU 1 seq
prokMSA_id:59894 Bacteroidetes clone ccspost2184 
2.15.6.6102 OTU 1 seq
prokMSA_id:48679 CFB group clone TAF-B81 
2.15.6.6124 OTU 1 seq
prokMSA_id:58634 Flexibacter flexilis subsp. pelliculosus strain:IFO 16028
2.15.6.6159 OTU 1 seq
prokMSA_id:82949 Flexibacteraceae IMSNU 14014 
2.15.6.6172 OTU 1 seq
prokMSA_id:18147 CFB group MERTZ_21CM_141 
2.15.6.6184 OTU 1 seq
prokMSA_id:32392 CFB group clone TAF-B84 
2.15.6.6192 OTU 1 seq
prokMSA_id:20428 clone BIhii45
2.15.6.6194 OTU 1 seq
prokMSA_id:24593 CFB group ikaite c9 isolate ikaite c9
2.15.6.6217 OTU 1 seq
prokMSA_id:36224 Hymenobacter group clone KL-53-2-6 
2.15.6.6218 OTU 1 seq
prokMSA_id:19106 Microscilla sp. Nano 1 complete 
2.15.6.6219 OTU 1 seq
prokMSA_id:40101 CFB group clone SM1G04 
2.15.6.6224 OTU 1 seq
prokMSA_id:18161 CFB group MERTZ_2CM_107 
2.15.6.6230 OTU 20 seqs
prokMSA_id:2585 unnamed organism
prokMSA_id:27784 Encarsia pergandiella asexual line endosymbiont 
prokMSA_id:38123 Brevipalpus phoenicis endosymbiont 
prokMSA_id:82482 Endosymbiont of Encarsia sp. 3 AY285777
prokMSA_id:82648 Endosymbiont of Oppiella nova 
prokMSA_id:82769 Endosymbiont of Brevipalpus obovatus 
prokMSA_id:82774 Endosymbiont of Brevipalpus phoenicis AY279412
prokMSA_id:82984 Endosymbiont of Balaustium sp
prokMSA_id:83033 Endosymbiont of Aphytis sp. 3 
prokMSA_id:83219 Endosymbiont of Encarsia sp. 2 AY279406
prokMSA_id:83469 Endosymbiont of Aspidiotus nerii 
prokMSA_id:83840 Endosymbiont of Aphytis lingnanensis 
prokMSA_id:83888 Endosymbiont of Dicranotropis hamata 
prokMSA_id:84888 Endosymbiont of Aphytis sp. 4 
prokMSA_id:84920 Endosymbiont of Petrobia harti AY279410
prokMSA_id:85539 Endosymbiont of Encarsiella noyesi AY279408
prokMSA_id:85710 Endosymbiont of Bemisia tabaci biotype A 
prokMSA_id:86289 Endosymbiont of Encarsia lutea AY279407
prokMSA_id:92039 Endosymbiont of Brevipalpus lewisi AB116515
prokMSA_id:93122 Endosymbiont of Brevipalpus californicus AB116514
2.15.6.6255 OTU 1 seq
prokMSA_id:53218 GKS2-70 
2.15.6.6261 OTU 5 seqs
prokMSA_id:79655 clone ARKCRY-50 
prokMSA_id:80153 clone ARKCRY-118 
prokMSA_id:80290 clone ARKMP-14 
prokMSA_id:80558 clone ARKCRY-39 
prokMSA_id:81016 clone ARKCRY2 
2.15.6.6276 OTU 1 seq
prokMSA_id:43316 Hymenobacter group clone KL-27-1-11 
2.15.6.6297 OTU 1 seq
prokMSA_id:59352 clone HP1A92 
2.15.6.6298 OTU 1 seq
prokMSA_id:33001 CFB group clone SM1C04 
2.15.6.6304 OTU 1 seq
prokMSA_id:69788 Agricultural soil clone SC-I-6 
2.15.6.6305 OTU 1 seq
prokMSA_id:39931 ORGANIC-8 
2.15.6.6315 OTU 1 seq
prokMSA_id:45068 Potato plant root clone RC-III-57 
2.15.6.6319 OTU 4 seqs
prokMSA_id:58635 Flexibacter flexilis strain:IFO 16027
prokMSA_id:58636 Flexibacter flexilis strain:IFO 16026
prokMSA_id:58637 Flexibacter flexilis strain:IFO 16025
prokMSA_id:58638 Flexibacter flexilis strain:IFO 15060
2.15.7 FLX.LITORALIS_GROUP 1 seq
2.15.7.5366 OTU 1 seq
prokMSA_id:58627 Flexibacter roseolus strain:IFO 16030
2.15.8 TMN.LAPSUM_GROUP 7 seqs
2.15.8.5770 OTU 2 seqs
prokMSA_id:2631 clone OPB73
prokMSA_id:2632 clone env.OPS 17
2.15.8.5826 OTU 1 seq
prokMSA_id:2627 unnamed organism
2.15.8.5824 OTU 1 seq
prokMSA_id:2626 Thermonema lapsum ATCC 43542
2.15.8.5895 OTU 3 seqs
prokMSA_id:2628 Thermonema rossianum str. NR-27T
prokMSA_id:2629 Thermonema rossianum str. SC-1
prokMSA_id:2630 Thermonema rossianum str. AG3-1
2.15.11 RHODOTHERMUS_GROUP 35 seqs
2.15.11.5270 OTU 5 seqs
prokMSA_id:29905 Rhodothermus marinus strain PRQ-55 
prokMSA_id:35404 Rhodothermus marinus strain DSM 4253 
prokMSA_id:37111 Rhodothermus marinus strain NR-29 
prokMSA_id:43102 Rhodothermus obamensis strain JCM 9785T 
prokMSA_id:74734 Rhodothermus marinus strain DSM 4252T 
2.15.11.5271 OTU 1 seq
prokMSA_id:2650 Cytophaga sp. str. BD7-14
2.15.11.5287 OTU 1 seq
prokMSA_id:26494 from anoxic bulk soil clone BSV40
2.15.11.5420 OTU 2 seqs
prokMSA_id:2644 clone EHB-5. AJ242997
prokMSA_id:2645 clone EHB-2
2.15.11.5543 OTU 1 seq
prokMSA_id:60618 clone Y30 
2.15.11.5647 OTU 4 seqs
prokMSA_id:33596 sponge symbiont RSWS18 
prokMSA_id:45159 sponge symbiont RSWS16 
prokMSA_id:60166 clone TK44
prokMSA_id:96738 Rhodothermus marinus isolate ISR03 Y14143
2.15.11.5774 OTU 1 seq
prokMSA_id:30398 CFB group kpj57rc 
2.15.11.5790 OTU 7 seqs
prokMSA_id:2642 clone EHB
prokMSA_id:2646 clone EHB-3
prokMSA_id:27936 Salinibacter ruber strain M8 AF323501
prokMSA_id:28419 Salinibacter ruber strain M31 
prokMSA_id:37202 Salinibacter ruber strain POLA 18 
prokMSA_id:43485 Salinibacter ruber strain POLA 13 
prokMSA_id:51274 Salinibacter ruber strain M1 
2.15.11.5822 OTU 1 seq
prokMSA_id:79504 sequences clone: IheB3-7
2.15.11.5863 OTU 1 seq
prokMSA_id:2635 Rhodothermus obamensis str. OKD7
2.15.11.5868 OTU 1 seq
prokMSA_id:2638 VC2.1 Bac16 complete 
2.15.11.5871 OTU 1 seq
prokMSA_id:2639 clone LB3-13
2.15.11.5875 OTU 1 seq
prokMSA_id:38912 Rhodothermus marinus strain PRQ-34 
2.15.11.5898 OTU 1 seq
prokMSA_id:2647 clone env.OPS 2
2.15.11.5899 OTU 1 seq
prokMSA_id:2649 Cytophaga sp. str. BD2-15
2.15.11.5923 OTU 1 seq
prokMSA_id:43898 green sulfur MERTZ_21CM_53 
2.15.11.5975 OTU 2 seqs
prokMSA_id:37226 green sulfur MERTZ_21CM_281 
prokMSA_id:52416 green sulfur MERTZ_2CM_69 
2.15.11.6115 OTU 1 seq
prokMSA_id:26060 CFB group MERTZ_0CM_89 
2.15.11.691 OTU 2 seqs
prokMSA_id:2636 Rhodothermus marinus
prokMSA_id:2637 Rhodothermus marinus
2.15.12 ENVIRONMENTAL_CLONE_OPB56_GROUP 10 seqs
2.15.12.5272 OTU 1 seq
prokMSA_id:2651 clone OPB56
2.15.12.5273 OTU 1 seq
prokMSA_id:2652 clone WCHA1-94
2.15.12.5294 OTU 2 seqs
prokMSA_id:36507 GR-296.II.11 clone GR-296.II.11
prokMSA_id:83562 clone CCM9b 
2.15.12.5753 OTU 2 seqs
prokMSA_id:2654 clone OPS77
prokMSA_id:46550 green sulfur clone SM1H02 
2.15.12.5928 OTU 1 seq
prokMSA_id:57444 CFB group clone P. palm A 12
2.15.12.6053 OTU 1 seq
prokMSA_id:66901 clone SHA-83
2.15.12.6131 OTU 1 seq
prokMSA_id:49950 CFB/Green sulfur group clone 
2.15.12.6146 OTU 1 seq
prokMSA_id:25315 sludge A12b 
2.16 GREEN_SULFUR_BACTERIA 43 seqs
2.16.1 ENVIRONMENTAL_CLONE_WCHB1-02_GROUP 7 seqs
2.16.1.1007 OTU 1 seq
prokMSA_id:2657 clone WCHB1-02
2.16.1.1056 OTU 1 seq
prokMSA_id:2660 clone WCHB1-03
2.16.1.461 OTU 5 seqs
prokMSA_id:2659 clone OPS107
prokMSA_id:2661 clone OPB60
prokMSA_id:2663 clone OPS148
prokMSA_id:2664 clone OPS163
prokMSA_id:36070 SRI-280 
2.16.3 CHLOROBIUM_GROUP 36 seqs
2.16.3.1020 OTU 3 seqs
prokMSA_id:2678 clone PENDANT-21. AF142933
prokMSA_id:2679 clone PENDANT-20
prokMSA_id:52206 green sulfur MERTZ_2CM_278 
2.16.3.1039 OTU 2 seqs
prokMSA_id:2692 Chlorobium limicola str. 6230
prokMSA_id:63746 Chlorobium limicola f. thiosulfatophilum strain 1430
2.16.3.262 OTU 11 seqs
prokMSA_id:2670 Pelodictyon phaeoclathratiforme str. BU-1
prokMSA_id:2675 Prosthecochloris aestuarii str. SK 413 DSM 271
prokMSA_id:2676 Chlorobium limicola str. 8327
prokMSA_id:2681 Chlorobium vibrioforme str. UdG 6026. Y10649
prokMSA_id:2687 Chlorobium limicola str. UdG 6040. Y10642
prokMSA_id:2694 Chlorobium vibrioforme str. 6132. Y08103
prokMSA_id:2695 Pelodictyon luteolum str. 2530. Y08107
prokMSA_id:18641 Chlorobium ferrooxidans 
prokMSA_id:64302 Chlorobium tepidum TLS section 14 of 194 of the complete gen
prokMSA_id:71554 Chlorobium vibrioforme f. thiosulfatophilum strain NCIB 8346
prokMSA_id:91506 clone K2-4-2 AY344404
2.16.3.295 OTU 1 seq
prokMSA_id:2677 clone SJA-28
2.16.3.341 OTU 1 seq
prokMSA_id:51942 clone SM1H06 
2.16.3.344 OTU 1 seq
prokMSA_id:62569 isolate P2CN14
2.16.3.503 OTU 1 seq
prokMSA_id:2680 Chloroherpeton thalassium
2.16.3.549 OTU 1 seq
prokMSA_id:60815 Chlorobi clone Cart-N2 
2.16.3.636 OTU 1 seq
prokMSA_id:60814 Chlorobi clone Cart-N3 
2.16.3.755 OTU 5 seqs
prokMSA_id:19434 green sulfur clone SM1B03 
prokMSA_id:28620 green sulfur clone SM1B02 
prokMSA_id:34775 green sulfur clone SM1C05 
prokMSA_id:39737 green sulfur clone SM2F10 
prokMSA_id:48102 green sulfur clone SM1B01 
2.16.3.859 OTU 7 seqs
prokMSA_id:2673 Chlorobium phaeovibrioides str. 2631
prokMSA_id:63878 Chlorobium vibrioforme f. thiosulfatophilum strain DSM 265
prokMSA_id:63917 Chlorobium phaeovibrioides strain DSM 270
prokMSA_id:63925 Chlorobium vibrioforme strain DSM 261
prokMSA_id:73247 Chlorobium limicola strain DSM246
prokMSA_id:73772 Chlorobium limicola f. thiosulfatophilum strain 1630
prokMSA_id:74116 Chlorobium limicola f. thiosulfatophilum strain 9330 AJ29082
2.16.3.906 OTU 1 seq
prokMSA_id:63922 Chlorobium phaeobacteroides strain DSM 1677
2.16.3.995 OTU 1 seq
prokMSA_id:69274 Chlorobium limicola strain:M1
2.18 ENVIRONMENTAL_CLONE_WCHB1-31_GROUP 102 seqs
2.18.101 OTU 1 seq
prokMSA_id:26613 Anaerobic filamentous STL-6-O1 
2.18.1054 OTU 1 seq
prokMSA_id:25243 green nonsulfur clone SM1F10 
2.18.106 OTU 1 seq
prokMSA_id:66907 clone SHD-231
2.18.1071 OTU 2 seqs
prokMSA_id:63984 clone 131
prokMSA_id:64880 clone 31
2.18.1078 OTU 1 seq
prokMSA_id:70228 a2b046 
2.18.121 OTU 1 seq
prokMSA_id:45285 AB13 
2.18.158 OTU 1 seq
prokMSA_id:65477 SHD-43 
2.18.159 OTU 1 seq
prokMSA_id:65479 SHD-235 
2.18.162 OTU 2 seqs
prokMSA_id:2744 clone SJA-58
prokMSA_id:84512 Anaerobic filamentous KIBI-1 
2.18.166 OTU 1 seq
prokMSA_id:69761 C1_B004 
2.18.170 OTU 1 seq
prokMSA_id:71617 clone SBR2037
2.18.172 OTU 1 seq
prokMSA_id:73779 Chloroflexaceae group clone P2-G12
2.18.174 OTU 1 seq
prokMSA_id:44630 Anaerobic filamentous UNI-1 
2.18.175 OTU 1 seq
prokMSA_id:71882 C1_B046 
2.18.188 OTU 1 seq
prokMSA_id:19494 clone GIF1 
2.18.2 OTU 1 seq
prokMSA_id:38904 AA25 
2.18.205 OTU 1 seq
prokMSA_id:76756 clone JG34-KF-221
2.18.225 OTU 1 seq
prokMSA_id:34880 Toluene-degrading methanogenic consortium Eub 6 
2.18.239 OTU 2 seqs
prokMSA_id:66909 clone SHD-190
prokMSA_id:66946 clone SHA-27
2.18.25 OTU 1 seq
prokMSA_id:72208 C1_B034 
2.18.258 OTU 7 seqs
prokMSA_id:2740 clone WCHB1-05
prokMSA_id:2745 clone SJA-108
prokMSA_id:65476 SHD-299 AJ278173
prokMSA_id:66910 clone SHD-100 AJ306794
prokMSA_id:66911 clone SHD-14
prokMSA_id:77298 K-4b6 
prokMSA_id:77570 K-5b9 
2.18.266 OTU 2 seqs
prokMSA_id:80378 Chloroflexi clone O1aA21 
prokMSA_id:80786 Chloroflexi clone O1aA19 
2.18.276 OTU 1 seq
prokMSA_id:21437 SHA-105 
2.18.286 OTU 1 seq
prokMSA_id:51584 Thermal soil YNP1 
2.18.355 OTU 1 seq
prokMSA_id:81161 clone ZZ14AC19 
2.18.356 OTU 1 seq
prokMSA_id:2752 clone H1.43.f
2.18.358 OTU 1 seq
prokMSA_id:2756 clone RB03
2.18.374 OTU 1 seq
prokMSA_id:65692 soil clone S041 
2.18.375 OTU 1 seq
prokMSA_id:65693 soil clone C043 
2.18.376 OTU 1 seq
prokMSA_id:2707 clone WCHB1-63
2.18.382 OTU 1 seq
prokMSA_id:38560 a1b002 
2.18.390 OTU 1 seq
prokMSA_id:33506 green nonsulfur MERTZ_2CM_217 
2.18.402 OTU 1 seq
prokMSA_id:72140 a1b007 
2.18.411 OTU 1 seq
prokMSA_id:32511 UASB_TL14 complete 
2.18.413 OTU 1 seq
prokMSA_id:2711 clone PENDANT-36
2.18.416 OTU 3 seqs
prokMSA_id:2709 clone OPB12. AF027031
prokMSA_id:2712 clone OPB11. AF027032
prokMSA_id:2715 clone OPS124
2.18.43 OTU 6 seqs
prokMSA_id:24750 Chloroflexaceae group clone DGGE band P6.2
prokMSA_id:25099 Chloroflexaceae group clone P2-C09
prokMSA_id:38613 Chloroflexaceae group clone P2-F12
prokMSA_id:52373 Chloroflexaceae group clone P5-F05 AJ309634
prokMSA_id:70638 Chloroflexaceae group clone P6-B01
prokMSA_id:73176 Chloroflexaceae group clone DGGE band P6.1
2.18.470 OTU 3 seqs
prokMSA_id:2750 clone WCHB1-50
prokMSA_id:2751 clone SJA-35
prokMSA_id:63208 clone FW24 
2.18.473 OTU 1 seq
prokMSA_id:17692 Banisveld landfill BVB11 
2.18.487 OTU 1 seq
prokMSA_id:85265 Anaerobic filamentous IMO-1 
2.18.490 OTU 1 seq
prokMSA_id:83666 Anaerobic filamentous YMTK-2 
2.18.494 OTU 1 seq
prokMSA_id:30996 green nonsulfur MERTZ_2CM_197 
2.18.509 OTU 1 seq
prokMSA_id:23789 clone BH4-63 
2.18.566 OTU 2 seqs
prokMSA_id:2710 clone SJA-101
prokMSA_id:38185 Eub No. 13 
2.18.57 OTU 1 seq
prokMSA_id:31908 SHA-300 
2.18.576 OTU 1 seq
prokMSA_id:55534 clone SHA-36
2.18.583 OTU 1 seq
prokMSA_id:65478 SHD-238 
2.18.606 OTU 1 seq
prokMSA_id:71233 a2b029 
2.18.651 OTU 1 seq
prokMSA_id:66905 clone SHD-262
2.18.683 OTU 1 seq
prokMSA_id:2741 clone WCHB1-80
2.18.689 OTU 2 seqs
prokMSA_id:2743 clone WCHA1-69. AF050567
prokMSA_id:73947 Chloroflexi clone 44a-B1-15 
2.18.72 OTU 1 seq
prokMSA_id:83926 clone CCD21 
2.18.727 OTU 1 seq
prokMSA_id:71875 soil clone S0208 
2.18.730 OTU 1 seq
prokMSA_id:67028 clone SHD-249
2.18.757 OTU 1 seq
prokMSA_id:67038 clone SHA-8
2.18.76 OTU 1 seq
prokMSA_id:66944 clone SHA-147
2.18.766 OTU 5 seqs
prokMSA_id:2728 clone WCHB1-43
prokMSA_id:2742 clone WCHB1-44
prokMSA_id:20651 SHA-56 
prokMSA_id:47263 SHA-24 
prokMSA_id:56469 SHD-245 
2.18.789 OTU 1 seq
prokMSA_id:30131 clone SM1D10 
2.18.836 OTU 1 seq
prokMSA_id:2721 clone RB41
2.18.838 OTU 1 seq
prokMSA_id:2722 clone WCHB1-62
2.18.843 OTU 1 seq
prokMSA_id:2724 clone SJA-170
2.18.846 OTU 1 seq
prokMSA_id:2725 clone SB-34
2.18.849 OTU 1 seq
prokMSA_id:2727 clone LB3-100
2.18.850 OTU 1 seq
prokMSA_id:42071 C1-28 clone C1-28
2.18.86 OTU 1 seq
prokMSA_id:45276 TA17 
2.18.869 OTU 1 seq
prokMSA_id:2729 clone SJA-116
2.18.895 OTU 2 seqs
prokMSA_id:84241 clone CARB_ESS_12 
prokMSA_id:85574 clone CARB_ESS_5 
2.18.90 OTU 1 seq
prokMSA_id:66945 clone SHA-135
2.18.910 OTU 1 seq
prokMSA_id:2736 clone WCHB1-31
2.18.913 OTU 1 seq
prokMSA_id:62549 isolate P2CN39
2.18.933 OTU 1 seq
prokMSA_id:41206 green nonsulfur MERTZ_21CM_156 
2.18.94 OTU 1 seq
prokMSA_id:66949 clone SHA-2
2.18.946 OTU 1 seq
prokMSA_id:81557 clone KM87 
2.18.952 OTU 1 seq
prokMSA_id:22061 sludge H5 
2.18.977 OTU 1 seq
prokMSA_id:23814 green nonsulfur MERTZ_2CM_137 
2.18.989 OTU 1 seq
prokMSA_id:2748 clone WCHA1-79
2.20 PLANCTOMYCES_AND_RELATIVES 386 seqs
2.20.1 PIRELLULA_GROUP 156 seqs
2.20.1.1 PIRELLULA_SCHLESNER_ISOLATES 84 seqs
2.20.1.1.4660 OTU 1 seq
prokMSA_id:46836 planctomycete MERTZ_2CM_307 
2.20.1.1.4670 OTU 2 seqs
prokMSA_id:85976 planctomycete clone CY0ARA055B12 of environmental sample of 
prokMSA_id:86334 planctomycete clone CY0ARA029G09 of environmental sample of 
2.20.1.1.4677 OTU 5 seqs
prokMSA_id:82851 planctomycete clone CY0ARA055C03 of environmental sample of 
prokMSA_id:83873 planctomycete clone CY0ARA026H07 of environmental sample of 
prokMSA_id:85229 planctomycete clone CY0ARA027D11 of environmental sample of 
prokMSA_id:85571 planctomycete clone CY0ARA032A03 of environmental sample of 
prokMSA_id:86238 planctomycete clone CY0ARA025H03 of environmental sample of 
2.20.1.1.4683 OTU 2 seqs
prokMSA_id:83520 planctomycete clone CY0ARA025F10 of environmental sample of 
prokMSA_id:86383 planctomycete clone CY0ARA028B09 of environmental sample of 
2.20.1.1.4689 OTU 2 seqs
prokMSA_id:2771 Pirellula sp. str. Schlesner 1
prokMSA_id:2776 str. 608
2.20.1.1.4692 OTU 4 seqs
prokMSA_id:82939 planctomycete clone CY0ARA026F01 of environmental sample of 
prokMSA_id:84399 planctomycete clone CY0ARA031A01 of environmental sample of 
prokMSA_id:84674 planctomycete clone CY0ARA031D06 of environmental sample of 
prokMSA_id:86221 planctomycete clone CY0ARA026G04 of environmental sample of 
2.20.1.1.4694 OTU 1 seq
prokMSA_id:40888 clone HT2F11 
2.20.1.1.4701 OTU 1 seq
prokMSA_id:48536 soil PBS-40 
2.20.1.1.4704 OTU 2 seqs
prokMSA_id:82914 planctomycete clone CY0ARA025E11 of environmental sample of 
prokMSA_id:84402 planctomycete clone CY0ARA032H05 of environmental sample of 
2.20.1.1.4713 OTU 1 seq
prokMSA_id:40268 planctomycete isolate ikaite un-c21
2.20.1.1.4716 OTU 1 seq
prokMSA_id:34936 planctomycete MERTZ_2CM_236 
2.20.1.1.4724 OTU 1 seq
prokMSA_id:35748 planctomycete clone DSP48
2.20.1.1.4720 OTU 1 seq
prokMSA_id:84073 planctomycete clone CY0ARA032G08 of environmental sample of 
2.20.1.1.4722 OTU 1 seq
prokMSA_id:20894 planctomycete clone DSP26
2.20.1.1.4729 OTU 1 seq
prokMSA_id:52599 planctomycete clone DSP18
2.20.1.1.4738 OTU 1 seq
prokMSA_id:44654 soil PBS-33 
2.20.1.1.4735 OTU 1 seq
prokMSA_id:85995 planctomycete clone CY0ARA025E05 of environmental sample of 
2.20.1.1.4748 OTU 1 seq
prokMSA_id:2767 Pirellula sp. str. Schlesner 140
2.20.1.1.4753 OTU 1 seq
prokMSA_id:80219 clone ARKCH2Br2-73 
2.20.1.1.4761 OTU 1 seq
prokMSA_id:22815 planctomycete Sva0800 
2.20.1.1.4762 OTU 1 seq
prokMSA_id:31565 clone KS32 
2.20.1.1.4767 OTU 1 seq
prokMSA_id:2770 Pirellula sp. str. Schlesner 384
2.20.1.1.4772 OTU 1 seq
prokMSA_id:2772 clone HstpL75
2.20.1.1.4770 OTU 1 seq
prokMSA_id:33379 planctomycete clone49 
2.20.1.1.4769 OTU 1 seq
prokMSA_id:71342 planctomycete clone LD1-PA40 
2.20.1.1.4775 OTU 1 seq
prokMSA_id:2777 str. 529
2.20.1.1.4778 OTU 1 seq
prokMSA_id:2778 str. 610
2.20.1.1.4792 OTU 1 seq
prokMSA_id:2780 Pirellula Pirellula clone 6N14
2.20.1.1.4797 OTU 1 seq
prokMSA_id:2784 str. 337
2.20.1.1.4802 OTU 3 seqs
prokMSA_id:84128 planctomycete clone CY0ARA026G09 of environmental sample of 
prokMSA_id:85856 planctomycete clone CY0ARA025H08 of environmental sample of 
prokMSA_id:86524 planctomycete clone CY0ARA031H01 of environmental sample of 
2.20.1.1.4799 OTU 1 seq
prokMSA_id:2785 str. 567
2.20.1.1.4801 OTU 2 seqs
prokMSA_id:83238 planctomycete clone CY0ARA030F07 of environmental sample of 
prokMSA_id:83410 planctomycete clone CY0ARA025B08 of environmental sample of 
2.20.1.1.4807 OTU 1 seq
prokMSA_id:2787 Pirellula sp. str. Schlesner 158
2.20.1.1.4814 OTU 2 seqs
prokMSA_id:2783 Pirellula sp. str. Schlesner 516
prokMSA_id:2786 str. 543
2.20.1.1.4813 OTU 1 seq
prokMSA_id:86095 planctomycete clone CY0ARA027H11 of environmental sample of 
2.20.1.1.4815 OTU 7 seqs
prokMSA_id:33918 planctomycete clone DSP12 AJ290173
prokMSA_id:41687 planctomycete clone DSP19 AJ290174
prokMSA_id:43981 planctomycete clone DSP23
prokMSA_id:45321 planctomycete clone DSP17
prokMSA_id:54575 planctomycete clone DSP04 AJ290170
prokMSA_id:71284 planctomycete clone DSP41
prokMSA_id:91141 clone W4A-A33 AY345510
2.20.1.1.4835 OTU 2 seqs
prokMSA_id:42704 clone Tc94 
prokMSA_id:49237 clone Tc74 
2.20.1.1.4837 OTU 2 seqs
prokMSA_id:18879 planctomycete clone30 
prokMSA_id:85732 clone CCM5b 
2.20.1.1.4847 OTU 1 seq
prokMSA_id:18704 planctomycete clone DSP25
2.20.1.1.4848 OTU 1 seq
prokMSA_id:18708 planctomycete MERTZ_2CM_25 
2.20.1.1.4851 OTU 1 seq
prokMSA_id:17699 planctomycete MERTZ_21CM_189 
2.20.1.1.4863 OTU 1 seq
prokMSA_id:33252 planctomycete clone DSP36
2.20.1.1.4861 OTU 1 seq
prokMSA_id:26033 planctomycete MERTZ_21CM_35 
2.20.1.1.4867 OTU 1 seq
prokMSA_id:52475 planctomycete clone46 
2.20.1.1.4869 OTU 1 seq
prokMSA_id:23198 soil PBS-81 
2.20.1.1.4880 OTU 1 seq
prokMSA_id:17937 clone KS31 
2.20.1.1.4885 OTU 1 seq
prokMSA_id:2805 str. 449
2.20.1.1.4883 OTU 1 seq
prokMSA_id:2800 Pirellula sp. str. Schlesner 382
2.20.1.1.4884 OTU 1 seq
prokMSA_id:2801 Pirellula sp. str. Schlesner 302
2.20.1.1.4889 OTU 1 seq
prokMSA_id:25864 planctomycete clone DSP08
2.20.1.1.4890 OTU 1 seq
prokMSA_id:84815 planctomycete clone CY0ARA027A06 of environmental sample of 
2.20.1.1.4891 OTU 1 seq
prokMSA_id:29003 planctomycete clone DSP56
2.20.1.1.4904 OTU 1 seq
prokMSA_id:19319 planctomycete MERTZ_2CM_313 
2.20.1.1.4905 OTU 1 seq
prokMSA_id:40976 planctomycete MERTZ_2CM_10 
2.20.1.1.4911 OTU 1 seq
prokMSA_id:2793 Pirellula sp. str. Schlesner 139
2.20.1.1.4918 OTU 1 seq
prokMSA_id:2797 clone ACE-29
2.20.1.1.4919 OTU 2 seqs
prokMSA_id:2798 clone OPB17. AF027057
prokMSA_id:2799 clone OPB6
2.20.1.1.4916 OTU 1 seq
prokMSA_id:2794 clone vadinBA30
2.20.1.1.4931 OTU 1 seq
prokMSA_id:66934 clone SHA-6
2.20.1.1.4956 OTU 1 seq
prokMSA_id:37686 PHOS-HE25 
2.20.1.2 PIR.STALEYI_SUBGROUP 67 seqs
2.20.1.2.4654 OTU 2 seqs
prokMSA_id:2824 clone HstpL83
prokMSA_id:16674 clone 33-FL67B99 
2.20.1.2.4659 OTU 1 seq
prokMSA_id:46904 soil PBS-II-13 
2.20.1.2.4687 OTU 2 seqs
prokMSA_id:35477 planctomycete clone41 
prokMSA_id:52010 planctomycete clone47 
2.20.1.2.4691 OTU 9 seqs
prokMSA_id:24219 Metal-contaminated soil clone K20-02 
prokMSA_id:26957 planctomycete clone23 
prokMSA_id:27858 Metal-contaminated soil clone K20-38 
prokMSA_id:35556 sludge A25 AF234700
prokMSA_id:84577 planctomycete clone CY0ARA028H09 of environmental sample of 
prokMSA_id:85090 planctomycete clone CY0ARA026C09 of environmental sample of 
prokMSA_id:85948 soil clone Tc130-30 AY242736
prokMSA_id:86136 planctomycete clone CY0ARA056C02 of environmental sample of 
prokMSA_id:98499 clone B28R AY395113
2.20.1.2.4693 OTU 2 seqs
prokMSA_id:16536 planctomycete MERTZ_21CM_143 
prokMSA_id:59765 clone BB2_148 
2.20.1.2.4709 OTU 1 seq
prokMSA_id:86701 planctomycete clone CY0ARA055H09 of environmental sample of 
2.20.1.2.4712 OTU 1 seq
prokMSA_id:73686 Planctomycetales clone SM2F01 
2.20.1.2.4718 OTU 1 seq
prokMSA_id:40276 Metal-contaminated soil clone K20-31 
2.20.1.2.4726 OTU 1 seq
prokMSA_id:37281 clone t040 
2.20.1.2.4732 OTU 1 seq
prokMSA_id:36841 planctomycete clone33 
2.20.1.2.4737 OTU 1 seq
prokMSA_id:37436 Pirellula kpj13f 
2.20.1.2.4740 OTU 1 seq
prokMSA_id:82583 planctomycete clone CY0ARA031C05 of environmental sample of 
2.20.1.2.4744 OTU 1 seq
prokMSA_id:27673 sludge A1 
2.20.1.2.4754 OTU 1 seq
prokMSA_id:28765 Agricultural soil clone SC-I-28 
2.20.1.2.4776 OTU 1 seq
prokMSA_id:43338 planctomycete MERTZ_0CM_317 
2.20.1.2.4782 OTU 1 seq
prokMSA_id:51502 planctomycete MERTZ_21CM_287 
2.20.1.2.4779 OTU 1 seq
prokMSA_id:30167 soil PRR-47 
2.20.1.2.4803 OTU 9 seqs
prokMSA_id:2809 str. 611. AJ231179
prokMSA_id:2810 str. 391. AJ231180
prokMSA_id:2812 Pirellula sp. ACM 3180
prokMSA_id:2813 Pirellula sp. ACM 3181
prokMSA_id:2814 Pirellula sp. str. AGA/C41
prokMSA_id:2815 Pirellula sp. str. AGA/M12
prokMSA_id:2816 Pirellula sp. str. AGA/M41
prokMSA_id:71634 Pirellula sp. SW16 
prokMSA_id:71672 Pirellula sp. Apfist 
2.20.1.2.4812 OTU 2 seqs
prokMSA_id:17181 planctomycete MERTZ_21CM_254 
prokMSA_id:42468 planctomycete MERTZ_21CM_21 
2.20.1.2.4808 OTU 1 seq
prokMSA_id:35201 planctomycete clone6 
2.20.1.2.4810 OTU 1 seq
prokMSA_id:2818 Pirellula sp. str. Schlesner 678
2.20.1.2.4819 OTU 3 seqs
prokMSA_id:2826 Pirellula staleyi ATCC 27377
prokMSA_id:2828 Pirellula staleyi DSM 6068 . AJ231183
prokMSA_id:35238 Pirellula staleyi strain ATCC 35122 
2.20.1.2.4817 OTU 3 seqs
prokMSA_id:38299 soil PRR-1B 
prokMSA_id:46511 soil PRR-7 
prokMSA_id:51628 soil PRR-14 
2.20.1.2.4833 OTU 2 seqs
prokMSA_id:33540 Metal-contaminated soil clone K20-20 
prokMSA_id:44989 planctomycete clone44 
2.20.1.2.4838 OTU 1 seq
prokMSA_id:32118 planctomycete clone DSP09
2.20.1.2.4844 OTU 1 seq
prokMSA_id:22503 planctomycete MERTZ_21CM_411 
2.20.1.2.4845 OTU 1 seq
prokMSA_id:22360 MERTZ_21CM_74 
2.20.1.2.4850 OTU 1 seq
prokMSA_id:82832 planctomycete clone CY0ARA027C01 of environmental sample of 
2.20.1.2.4853 OTU 1 seq
prokMSA_id:70249 C1_B039 
2.20.1.2.4860 OTU 1 seq
prokMSA_id:22522 planctomycete MERTZ_21CM_26 
2.20.1.2.4879 OTU 1 seq
prokMSA_id:30401 planctomycete clone40 
2.20.1.2.4877 OTU 1 seq
prokMSA_id:50882 sludge A8 
2.20.1.2.4876 OTU 1 seq
prokMSA_id:32460 planctomycete clone38 
2.20.1.2.4882 OTU 1 seq
prokMSA_id:66932 clone SHA-87
2.20.1.2.4888 OTU 1 seq
prokMSA_id:2808 Pirellula marina DSM 3645
2.20.1.2.4894 OTU 1 seq
prokMSA_id:38697 clone Tc77 
2.20.1.2.4903 OTU 1 seq
prokMSA_id:2811 str. 116
2.20.1.2.4900 OTU 1 seq
prokMSA_id:83886 planctomycete clone CY0ARA027E04 of environmental sample of 
2.20.1.2.4913 OTU 1 seq
prokMSA_id:83975 planctomycete clone CY0ARA031B03 of environmental sample of 
2.20.1.2.4912 OTU 1 seq
prokMSA_id:85578 planctomycete clone CY0ARA031F02 of environmental sample of 
2.20.1.2.4927 OTU 1 seq
prokMSA_id:2821 str. 292
2.20.1.2.4934 OTU 1 seq
prokMSA_id:47745 soil PBS-72 
2.20.1.3 ENVIRONMENTAL_CLONE_AGG8_SUBGROUP 5 seqs
2.20.1.3.4736 OTU 1 seq
prokMSA_id:2830 marine snow associated clone agg8
2.20.1.3.4739 OTU 1 seq
prokMSA_id:2831 clone HstpL8
2.20.1.3.4828 OTU 2 seqs
prokMSA_id:2833 Pirellula Pirellula clone 5H12
prokMSA_id:2834 Pirellula Pirellula clone 6O13
2.20.1.3.4892 OTU 1 seq
prokMSA_id:38280 planctomycete MERTZ_0CM_394 
2.20.2 PLANCTOMYCES_GROUP 75 seqs
2.20.2.1 PLN.LIMNOPHILUS_SUBGROUP 29 seqs
2.20.2.1.4682 OTU 3 seqs
prokMSA_id:26236 verrucomicrobium DEV057 clone DEV057 AJ401119
prokMSA_id:40021 verrucomicrobium DEV036 clone DEV036
prokMSA_id:46265 verrucomicrobium DEV050 clone DEV050
2.20.2.1.4727 OTU 1 seq
prokMSA_id:26861 planctomycete MERTZ_2CM_85 
2.20.2.1.4730 OTU 1 seq
prokMSA_id:19648 planctomycete MERTZ_2CM_312 
2.20.2.1.4746 OTU 1 seq
prokMSA_id:2837 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 
2.20.2.1.4757 OTU 1 seq
prokMSA_id:2840 Planctomyces 599 str. 599
2.20.2.1.4759 OTU 1 seq
prokMSA_id:36579 planctomycete clone DSP14
2.20.2.1.4765 OTU 1 seq
prokMSA_id:22015 planctomycete MERTZ_0CM_311 
2.20.2.1.4768 OTU 1 seq
prokMSA_id:2843 clone Sva0503
2.20.2.1.4773 OTU 3 seqs
prokMSA_id:2845 Planctomyces limnophilus ATCC 43296
prokMSA_id:2846 Planctomyces 287 str. 287. AJ231187
prokMSA_id:2847 Planctomyces 282 str. 282. AJ231188
2.20.2.1.4818 OTU 4 seqs
prokMSA_id:84043 planctomycete clone CY0ARA027C06 of environmental sample of 
prokMSA_id:85255 planctomycete clone CY0ARA028G10 of environmental sample of 
prokMSA_id:85278 planctomycete clone CY0ARA028F09 of environmental sample of 
prokMSA_id:89643 DSSD34 AY328733
2.20.2.1.4821 OTU 2 seqs
prokMSA_id:2838 Planctomyces sp. str. Schlesner 638
prokMSA_id:2841 Planctomyces sp. str. Schlesner 642
2.20.2.1.4858 OTU 1 seq
prokMSA_id:29509 planctomycete clone DSP01
2.20.2.1.4864 OTU 1 seq
prokMSA_id:45322 planctomycete MERTZ_2CM_102 
2.20.2.1.4895 OTU 1 seq
prokMSA_id:63101 clone MB-C2-147 
2.20.2.1.4897 OTU 1 seq
prokMSA_id:63103 clone MB-C2-105 
2.20.2.1.4923 OTU 1 seq
prokMSA_id:33421 planctomycete MERTZ_21CM_298 
2.20.2.1.4920 OTU 1 seq
prokMSA_id:43304 planctomycete MERTZ_21CM_155 
2.20.2.1.4929 OTU 1 seq
prokMSA_id:34497 planctomycete MERTZ_21CM_249 
2.20.2.1.4930 OTU 1 seq
prokMSA_id:66933 clone SHA-43
2.20.2.1.4950 OTU 1 seq
prokMSA_id:20818 planctomycete MERTZ_2CM_77 
2.20.2.1.4952 OTU 1 seq
prokMSA_id:28302 planctomycete MERTZ_21CM_239 
2.20.2.2 PLN.MARIS_SUBGROUP 46 seqs
2.20.2.2.4650 OTU 1 seq
prokMSA_id:17529 sp. clone 1200-34
2.20.2.2.4652 OTU 5 seqs
prokMSA_id:82501 planctomycete clone CY0ARA026E07 of environmental sample of 
prokMSA_id:84112 planctomycete clone CY0ARA028F06 of environmental sample of 
prokMSA_id:84152 planctomycete clone CY0ARA031G02 of environmental sample of 
prokMSA_id:84174 planctomycete clone CY0ARA028C04 of environmental sample of 
prokMSA_id:84269 planctomycete clone CY0ARA027A01 of environmental sample of 
2.20.2.2.4674 OTU 1 seq
prokMSA_id:85582 planctomycete clone CY0ARA028B05 of environmental sample of 
2.20.2.2.4676 OTU 3 seqs
prokMSA_id:84069 planctomycete clone CY0ARA026C05 of environmental sample of 
prokMSA_id:85037 planctomycete clone CY0ARA031E04 of environmental sample of 
prokMSA_id:86466 planctomycete clone CY0ARA028E09 of environmental sample of 
2.20.2.2.4699 OTU 6 seqs
prokMSA_id:84138 planctomycete clone CY0ARA027G11 of environmental sample of 
prokMSA_id:85389 planctomycete clone CY0ARA025A02 of environmental sample of 
prokMSA_id:85891 planctomycete clone CY0ARA027C03 of environmental sample of 
prokMSA_id:85984 planctomycete clone CY0ARA028B01 of environmental sample of 
prokMSA_id:86090 planctomycete clone CY0ARA031E07 of environmental sample of 
prokMSA_id:86400 planctomycete clone CY0ARA031F03 of environmental sample of 
2.20.2.2.4711 OTU 1 seq
prokMSA_id:66533 clone cvf113042 
2.20.2.2.4734 OTU 1 seq
prokMSA_id:26219 planctomycete MERTZ_21CM_203 
2.20.2.2.4756 OTU 1 seq
prokMSA_id:34174 mRNA clone sipK18
2.20.2.2.4764 OTU 1 seq
prokMSA_id:83569 planctomycete clone CY0ARA032H11 of environmental sample of 
2.20.2.2.4774 OTU 1 seq
prokMSA_id:2849 Planctomyces sp. str. Schlesner 130
2.20.2.2.4783 OTU 1 seq
prokMSA_id:52232 Crater Lake CL500-4 
2.20.2.2.4789 OTU 1 seq
prokMSA_id:2851 Planctomyces maris DSM 8797
2.20.2.2.4791 OTU 1 seq
prokMSA_id:2852 Planctomyces ACE-2
2.20.2.2.4793 OTU 1 seq
prokMSA_id:2853 Planctomyces Planctomyces clone 7F15
2.20.2.2.4796 OTU 1 seq
prokMSA_id:2856 Planctomyces sp. str. Schlesner 668
2.20.2.2.4798 OTU 1 seq
prokMSA_id:2858 clone QSSC8L-11
2.20.2.2.4806 OTU 1 seq
prokMSA_id:2859 Planctomyces 248 str. 248
2.20.2.2.4816 OTU 2 seqs
prokMSA_id:2862 Planctomyces sp. str. Schlesner 269
prokMSA_id:2863 Planctomyces 423 str. 423
2.20.2.2.4831 OTU 3 seqs
prokMSA_id:2857 Planctomyces brasiliensis DSM 5305
prokMSA_id:2860 Planctomyces sp. str. AGA/M18
prokMSA_id:62476 planctomycete clone LA4-B40N 
2.20.2.2.4855 OTU 1 seq
prokMSA_id:84446 planctomycete clone CY0ARA026D10 of environmental sample of 
2.20.2.2.4862 OTU 1 seq
prokMSA_id:27845 planctomycete MERTZ_21CM_40 
2.20.2.2.4872 OTU 1 seq
prokMSA_id:39076 planctomycete MERTZ_21CM_342 
2.20.2.2.4873 OTU 1 seq
prokMSA_id:46917 Agricultural soil clone SC-I-11 
2.20.2.2.4881 OTU 1 seq
prokMSA_id:82539 planctomycete clone CY0ARA028C07 of environmental sample of 
2.20.2.2.4899 OTU 1 seq
prokMSA_id:2861 Planctomyces sp. str. Schlesner 664
2.20.2.2.4917 OTU 1 seq
prokMSA_id:2869 clone SCALE-10
2.20.2.2.4933 OTU 1 seq
prokMSA_id:2871 Planctomyces sp. str. BD1-23
2.20.2.2.4948 OTU 5 seqs
prokMSA_id:83300 planctomycete clone CY0ARA032C05 of environmental sample of 
prokMSA_id:83373 planctomycete clone CY0ARA027D12 of environmental sample of 
prokMSA_id:84911 planctomycete clone CY0ARA027D01 of environmental sample of 
prokMSA_id:85009 planctomycete clone CY0ARA031F05 of environmental sample of 
prokMSA_id:85309 planctomycete clone CY0ARA026D07 of environmental sample of 
2.20.3 ISOSPHAERA_GROUP 55 seqs
2.20.3.1 ISO.PALLIDA_SUBGROUP 22 seqs
2.20.3.1.4695 OTU 2 seqs
prokMSA_id:30187 Crater Lake CL500-100 
prokMSA_id:37264 Crater Lake CL500-15 AF316773
2.20.3.1.4710 OTU 1 seq
prokMSA_id:30562 planctomycete MERTZ_21CM_399 
2.20.3.1.4749 OTU 1 seq
prokMSA_id:63228 clone FW26 
2.20.3.1.4750 OTU 1 seq
prokMSA_id:20269 Nostocoida limicola III strain Ben220 
2.20.3.1.4780 OTU 1 seq
prokMSA_id:43216 GT43a 
2.20.3.1.4824 OTU 2 seqs
prokMSA_id:2881 str. 563
prokMSA_id:31175 Isosphaera-like str. CJuql1 
2.20.3.1.4829 OTU 2 seqs
prokMSA_id:16557 Nostocoida limicola III strain Ben222 
prokMSA_id:51778 Nostocoida limicola III strain Ben225 
2.20.3.1.4846 OTU 1 seq
prokMSA_id:53180 Nostocoida limicola III strain Ben223 
2.20.3.1.4856 OTU 1 seq
prokMSA_id:45617 Isosphaera-like str. C2-3 
2.20.3.1.4868 OTU 1 seq
prokMSA_id:24367 WD287 clone WD287
2.20.3.1.4874 OTU 1 seq
prokMSA_id:46130 sludge A19 
2.20.3.1.4902 OTU 1 seq
prokMSA_id:27191 2112 clone 2112
2.20.3.1.4928 OTU 1 seq
prokMSA_id:33768 Nostocoida limicola III strain Ben224 
2.20.3.1.4942 OTU 1 seq
prokMSA_id:2877 Isosphaera sp. str. Schlesner 640
2.20.3.1.4943 OTU 1 seq
prokMSA_id:2878 str. 394
2.20.3.1.4940 OTU 1 seq
prokMSA_id:2875 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 
2.20.3.1.4944 OTU 1 seq
prokMSA_id:2879 Isosphaera sp. str. Schlesner 666
2.20.3.1.4958 OTU 1 seq
prokMSA_id:2885 Isosphaera sp. str. Schlesner 657
2.20.3.1.4957 OTU 1 seq
prokMSA_id:2884 Isosphaera pallida DSM 9630
2.20.3.2 MOUNT_COOT-THA_ENVIRONMENTAL_CLONES_I 15 seqs
2.20.3.2.4649 OTU 1 seq
prokMSA_id:36970 planctomycete clone35 
2.20.3.2.4655 OTU 2 seqs
prokMSA_id:17601 planctomycete clone27 
prokMSA_id:19485 planctomycete clone14 
2.20.3.2.4651 OTU 1 seq
prokMSA_id:42389 sludge A12 
2.20.3.2.4661 OTU 1 seq
prokMSA_id:16827 planctomycete clone11 
2.20.3.2.4714 OTU 1 seq
prokMSA_id:27713 planctomycete clone7 
2.20.3.2.4785 OTU 1 seq
prokMSA_id:29777 planctomycete clone28 
2.20.3.2.4852 OTU 1 seq
prokMSA_id:22379 thermal soil clone YNPFFP32 
2.20.3.2.4859 OTU 1 seq
prokMSA_id:31715 planctomycete clone9 
2.20.3.2.4866 OTU 1 seq
prokMSA_id:17920 planctomycete YNPRH54A 
2.20.3.2.4871 OTU 1 seq
prokMSA_id:44900 planctomycete clone18 
2.20.3.2.4932 OTU 1 seq
prokMSA_id:41568 planctomycete clone22 
2.20.3.2.4945 OTU 1 seq
prokMSA_id:46659 planctomycete clone32 
2.20.3.2.4959 OTU 1 seq
prokMSA_id:2887 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 
2.20.3.2.4961 OTU 1 seq
prokMSA_id:2889 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 
2.20.3.3 GMT.OBSCURIGLOBUS_SUBGROUP 18 seqs
2.20.3.3.4664 OTU 1 seq
prokMSA_id:2896 unnamed organism
2.20.3.3.4665 OTU 1 seq
prokMSA_id:2897 Gemmata obscuriglobus str. Schlesner 633
2.20.3.3.4666 OTU 1 seq
prokMSA_id:2898 unnamed organism
2.20.3.3.4667 OTU 1 seq
prokMSA_id:2899 clone 2BP-58
2.20.3.3.4690 OTU 3 seqs
prokMSA_id:2892 Gemmata obscuriglobus DSM 5831
prokMSA_id:2893 Gemmata obscuriglobus ACM 2246
prokMSA_id:2895 Gemmata obscuriglobus str. UQM 2246 ACM 2224
2.20.3.3.4698 OTU 2 seqs
prokMSA_id:83039 planctomycete clone CY0ARA027A08 of environmental sample of 
prokMSA_id:84729 planctomycete clone CY0ARA028B03 of environmental sample of 
2.20.3.3.4719 OTU 1 seq
prokMSA_id:73916 planctomycete clone20 
2.20.3.3.4733 OTU 1 seq
prokMSA_id:22723 Pietermaritzburg Y14-6 
2.20.3.3.4752 OTU 1 seq
prokMSA_id:23399 Gemmata-like str. JW11-2f5 
2.20.3.3.4827 OTU 3 seqs
prokMSA_id:41796 Gemmata-like str. JW9-3f1 
prokMSA_id:42240 Gemmata-like str. Soil9 
prokMSA_id:52302 Gemmata-like str. JW3-8s0 
2.20.3.3.4843 OTU 1 seq
prokMSA_id:60607 clone R38 
2.20.3.3.4857 OTU 1 seq
prokMSA_id:45545 clone Tc75 
2.20.3.3.4925 OTU 1 seq
prokMSA_id:22404 Gemmata-like str. CJuql4 
2.20.4 ENVIRONMENTAL_CLONE_AGG27 1 seq
2.20.4.4755 OTU 1 seq
prokMSA_id:2910 marine snow associated clone agg27
2.20.5 ENVIRONMENTAL_CLONE_A36O_GROUP 1 seq
2.20.5.4703 OTU 1 seq
prokMSA_id:39730 clone GIF19 
2.20.6 CHLAMYDOPHILA_SUBDIVISION 88 seqs
2.20.6.1 ENVIRONMENTAL_CLONE_WCHB1-58_GROUP 6 seqs
2.20.6.1.4668 OTU 2 seqs
prokMSA_id:79860 candidate division OD1 clone Bol6 
prokMSA_id:79995 candidate division OD1 clone Bol25 
2.20.6.1.4760 OTU 1 seq
prokMSA_id:2915 clone OPd3
2.20.6.1.4766 OTU 1 seq
prokMSA_id:2916 clone LGd8
2.20.6.1.4771 OTU 1 seq
prokMSA_id:2918 clone ACE-38
2.20.6.1.4915 OTU 1 seq
prokMSA_id:35504 Crater Lake CL500-94 
2.20.6.2 CHLAMYDOPHILA_GROUP 82 seqs
2.20.6.2.2 SMK.NEGEVENSIS_SUBGROUP 39 seqs
2.20.6.2.2.4663 OTU 2 seqs
prokMSA_id:2934 Simkania negevensis str. Z
prokMSA_id:2935 Simkania negevensis str. Z
2.20.6.2.2.4696 OTU 2 seqs
prokMSA_id:2930 unnamed organism
prokMSA_id:2933 unnamed organism
2.20.6.2.2.4702 OTU 1 seq
prokMSA_id:83246 Candidatus Rhabdochlamydia porcellionis 
2.20.6.2.2.4723 OTU 1 seq
prokMSA_id:33207 Chlamydiales clone cvE9 complete 
2.20.6.2.2.4743 OTU 2 seqs
prokMSA_id:17182 Endosymbiont of Bemisia tabaci biotype Jatropha 
prokMSA_id:89521 Fritschea bemisiae YaeL yaeL cds; putative glycosylhydrolase
2.20.6.2.2.4758 OTU 1 seq
prokMSA_id:24341 Neochlamydia hartmannellae 
2.20.6.2.2.4787 OTU 1 seq
prokMSA_id:2923 clone TAYNAYA-24
2.20.6.2.2.4790 OTU 1 seq
prokMSA_id:2925 clone M12
2.20.6.2.2.4788 OTU 1 seq
prokMSA_id:2924 clone BURTON-46
2.20.6.2.2.4823 OTU 2 seqs
prokMSA_id:2920 Parachlamydia acanthamoebae
prokMSA_id:49792 Parachlamydia sp. Hall's coccus 
2.20.6.2.2.4834 OTU 12 seqs
prokMSA_id:22160 Chlamydiales clone P-11 
prokMSA_id:24629 Chlamydiales clone P-13 
prokMSA_id:25769 Chlamydiales clone P-17 
prokMSA_id:26915 Chlamydiales clone P-19 
prokMSA_id:30860 Chlamydiales clone P-15 
prokMSA_id:31998 Chlamydiales clone P-8 
prokMSA_id:33726 Chlamydiales clone P-14 
prokMSA_id:34118 Chlamydiales clone P-10 
prokMSA_id:40042 Chlamydiales clone P-16 
prokMSA_id:43225 Chlamydiales clone P-1 
prokMSA_id:43574 Chlamydiales clone P-18 
prokMSA_id:50356 Chlamydiales clone P-12 
2.20.6.2.2.4836 OTU 3 seqs
prokMSA_id:18839 Chlamydiales clone P-7 
prokMSA_id:38880 Chlamydiales clone P-4 
prokMSA_id:44515 Chlamydiales clone P-9 
2.20.6.2.2.4886 OTU 1 seq
prokMSA_id:23644 corvenA4 
2.20.6.2.2.4898 OTU 1 seq
prokMSA_id:2932 unnamed organism
2.20.6.2.2.4896 OTU 1 seq
prokMSA_id:2931 unnamed organism
2.20.6.2.2.4909 OTU 1 seq
prokMSA_id:2936 Waddlia chondrophila str. WSU 86/1044
2.20.6.2.2.4924 OTU 2 seqs
prokMSA_id:45999 Chlamydiales clone P-3 
prokMSA_id:51801 Chlamydiales clone P-5 AF364565
2.20.6.2.2.4926 OTU 1 seq
prokMSA_id:30011 Chlamydiales MERTZ_2CM_173 
2.20.6.2.2.4936 OTU 1 seq
prokMSA_id:54620 Waddlia chondrophila complete ; and 23S 
2.20.6.2.2.4946 OTU 1 seq
prokMSA_id:31309 Chlamydiales clone cvE6 complete 
2.20.6.2.2.4964 OTU 1 seq
prokMSA_id:67842 Chlamydiales clone 44a-B1-34 
2.20.6.2.3 CHLAMYDOPHILA_SUBGROUP 43 seqs
2.20.6.2.3.4685 OTU 2 seqs
prokMSA_id:2945 Chlamydophila pneumoniae str. N16
prokMSA_id:2952 Chlamydophila pneumoniae str. N16
2.20.6.2.3.4686 OTU 3 seqs
prokMSA_id:3024 Chlamydia suis str. S45
prokMSA_id:3025 Chlamydia suis str. R22
prokMSA_id:72345 Chlamydia suis strain S45 complete ; and 23S 
2.20.6.2.3.4741 OTU 1 seq
prokMSA_id:25273 Chlamydiales clone P-6 
2.20.6.2.3.4820 OTU 6 seqs
prokMSA_id:2948 Chlamydophila pneumoniae str. TW-183. L06108
prokMSA_id:3006 Chlamydophila pneumoniae
prokMSA_id:3007 Chlamydophila pneumoniae str. CWL029
prokMSA_id:3008 Chlamydophila pneumoniae
prokMSA_id:49993 Chlamydophila pneumoniae CWL029 complete genome NC_000922
prokMSA_id:90574 Chlamydophila pneumoniae TW-183 section 4 of 4 of the comple
2.20.6.2.3.4822 OTU 19 seqs
prokMSA_id:2954 Chlamydia trachomatis str. 434
prokMSA_id:2955 Chlamydia trachomatis str. L2/434/BU ATCC VR-902B
prokMSA_id:2956 Chlamydia trachomatis str. E/UW-5/Cx
prokMSA_id:3009 Chlamydia trachomatis str. HAR-13. D89067
prokMSA_id:3010 Chlamydia trachomatis str. A.SA-1.OT. D88316
prokMSA_id:3011 Chlamydia trachomatis str. B/TW-5/OT
prokMSA_id:3012 Chlamydia trachomatis str. C/TW-3/OT
prokMSA_id:3013 Chlamydia trachomatis str. D/TW-3/CX. D85721
prokMSA_id:3014 Chlamydia trachomatis str. D/UW-3/CX. AE001345
prokMSA_id:3015 Chlamydia trachomatis str. D/UW-3/CX. AE001347
prokMSA_id:3041 Chlamydia muridarum str. MoPn/Wiess-Nigg
prokMSA_id:3042 Chlamydia muridarum str. SFPD
prokMSA_id:19114 Chlamydia trachomatis MoPn/Weiss-Nigg E17345
prokMSA_id:49665 Chlamydia trachomatis A/Har-13T E17344
prokMSA_id:50790 Chlamydia trachomatis complete genome NC_000117
prokMSA_id:52481 Chlamydia trachomatis complete genome AE001273
prokMSA_id:83720 Chlamydia muridarum section 12 of 85 of the complete genome 
prokMSA_id:84873 Chlamydia muridarum complete genome NC_002620
prokMSA_id:85637 Chlamydia muridarum section 11 of 85 of the complete genome 
2.20.6.2.3.4826 OTU 12 seqs
prokMSA_id:3027 Chlamydophila pecorum str. Bo/E58
prokMSA_id:3028 Chlamydophila pecorum str. BE. U73782
prokMSA_id:3029 Chlamydophila pecorum str. Bo/E8. U73785
prokMSA_id:3030 Chlamydia pecorum str. Bo/Shizuoka
prokMSA_id:3031 Chlamydia pecorum str. Bo/Maeda
prokMSA_id:3032 Chlamydophila pecorum str. Ov/IPA ATCC VR629
prokMSA_id:3033 Chlamydia pecorum str. Koala II
prokMSA_id:3034 Chlamydia pecorum str. Bo-1485
prokMSA_id:3035 Chlamydia pecorum str. Bo-Maeda
prokMSA_id:3036 Chlamydia pecorum str. Bo-Yokohama
prokMSA_id:3037 Chlamydia pecorum str. SPV789
prokMSA_id:36991 Chlamydia pecorum Bo/Maeda E17343
2.20.7 MOUNT_COOT-THA_ENVIRONMENTAL_CLONES_II 10 seqs
2.20.7.4731 OTU 1 seq
prokMSA_id:43121 verrucomicrobium DEV031 clone DEV031
2.20.7.4800 OTU 1 seq
prokMSA_id:49106 planctomycete clone2 
2.20.7.4830 OTU 3 seqs
prokMSA_id:23308 clone Tc79 
prokMSA_id:25369 clone Tc33 
prokMSA_id:84908 soil clone TcA24 
2.20.7.4840 OTU 1 seq
prokMSA_id:3044 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 
2.20.7.4839 OTU 1 seq
prokMSA_id:3043 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 
2.20.7.4841 OTU 1 seq
prokMSA_id:3045 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 
2.20.7.4842 OTU 1 seq
prokMSA_id:3047 clone TM5
2.20.7.4865 OTU 1 seq
prokMSA_id:45324 Metal-contaminated soil clone K20-32 
2.21 CYANOBACTERIA_AND_CHLOROPLASTS 1144 seqs
2.21.1 CYANOBACTERIA 815 seqs
2.21.1.1 OSCILLATORIA_GROUP 94 seqs
2.21.1.1.4998 OTU 1 seq
prokMSA_id:75533 clone HC-61 
2.21.1.1.4999 OTU 1 seq
prokMSA_id:25443 Geitlerinema PCC7105 
2.21.1.1.5012 OTU 1 seq
prokMSA_id:62920 Synechococcus sp. PCC 6312 
2.21.1.1.5029 OTU 6 seqs
prokMSA_id:3060 Synechococcus ATCC700243 str. C1 ATCC 700243
prokMSA_id:3063 Synechococcus elongatus
prokMSA_id:40063 Synechococcus PCC6716 
prokMSA_id:54965 Synechococcus PCC6717 
prokMSA_id:55947 Thermosynechococcus elongatus BP-1 complete genome NC_004113
prokMSA_id:61266 Thermosynechococcus elongatus BP-1 complete genome section 8
2.21.1.1.5032 OTU 1 seq
prokMSA_id:82269 Phormidium sp. ETS-05 isolate ETS-05
2.21.1.1.5038 OTU 3 seqs
prokMSA_id:58155 Rumen YS2 
prokMSA_id:84893 rumen clone BF2 AY244880
prokMSA_id:85761 rumen clone BF12 AY244890
2.21.1.1.5056 OTU 28 seqs
prokMSA_id:3066 "Oscillatoria agardhii" str. CYA 18
prokMSA_id:3071 Planktothrix rubescens str. BC-Pla 9401
prokMSA_id:3072 Planktothrix rubescens str. BC-Pla 9303
prokMSA_id:16819 Oscillatoria sp. strain 49 
prokMSA_id:56079 Planktothrix agardhii strain: CCAP 1459/21
prokMSA_id:58440 Planktothrix agardhii strain: NIES 596
prokMSA_id:58449 Planktothrix agardhii strain: NIVA CYA 88/3
prokMSA_id:58453 Planktothrix rubescens strain: NIVA CYA 85
prokMSA_id:58454 Planktothrix rubescens strain: NIVA CYA 73
prokMSA_id:58457 Planktothrix agardhii strain: NIVA CYA 59
prokMSA_id:58460 Planktothrix agardhii strain: NIVA CYA 56/3
prokMSA_id:58461 Planktothrix agardhii strain: NIVA CYA 34
prokMSA_id:58462 Planktothrix rubescens strain: NIVA CYA 35
prokMSA_id:58463 Planktothrix rubescens strain: NIVA CYA 320
prokMSA_id:58464 Planktothrix agardhii strain: NIVA CYA 313
prokMSA_id:58465 Planktothrix agardhii strain: NIVA CYA 30
prokMSA_id:58466 Planktothrix agardhii strain: NIVA CYA 29
prokMSA_id:58468 Planktothrix agardhii strain: NIVA CYA 229
prokMSA_id:58473 Planktothrix agardhii strain: NIVA CYA 15
prokMSA_id:58475 Planktothrix pseudagardhii strain: NIVA CYA 153
prokMSA_id:58477 Planktothrix rubescens strain: NIVA CYA 151
prokMSA_id:58480 Planktothrix rubescens strain: NIVA CYA 129
prokMSA_id:58482 Planktothrix agardhii strain: NIVA CYA 127
prokMSA_id:58487 Planktothrix agardhii strain: NIVA CYA 10
prokMSA_id:58497 Planktothrix agardhii starin:CCAP 1459/11A
prokMSA_id:72966 Oscillatoria sp. strain 2 
prokMSA_id:73793 Oscillatoria sp. strain CYA127 
prokMSA_id:80934 Oscillatoria agardhii 
2.21.1.1.5063 OTU 1 seq
prokMSA_id:3082 "Oscillatoria williamsii" PCC 7105
2.21.1.1.5077 OTU 1 seq
prokMSA_id:58491 Lyngbya hieronymusii var. hieronymusii strain: CN4-3
2.21.1.1.5078 OTU 8 seqs
prokMSA_id:55562 Planktothrix pseudagardhii strain: T19-6'-8 AB045966
prokMSA_id:55697 Planktothrix mougeotii strain: TR1-5
prokMSA_id:56026 Planktothrix pseudagardhii strain: T19-6'-6
prokMSA_id:58430 Planktothrix mougeotii strain: TR2-4
prokMSA_id:58431 Planktothrix mougeotii strain: TK5-1
prokMSA_id:58432 Planktothrix pseudagardhii strain: T1-8-4
prokMSA_id:58433 Planktothrix mougeotii strain: TK4-5
prokMSA_id:58490 Planktothrix pseudagardhii strain: CW4-5 AB045907
2.21.1.1.5141 OTU 1 seq
prokMSA_id:36764 cyanobacterium clone SM2C12 
2.21.1.1.5159 OTU 6 seqs
prokMSA_id:20614 Oscillatoria sp. Ant-G17 AF263334
prokMSA_id:26990 Oscillatoria acuminata 
prokMSA_id:32704 Oscillatoria sp. Ant-Salt AF263337
prokMSA_id:37596 Phormidium sp. Ant-Brack-3 AF263332
prokMSA_id:49230 Oscillatoria priestleyii 
prokMSA_id:51758 cyanobacterium isolate ikaite un-c15
2.21.1.1.5164 OTU 1 seq
prokMSA_id:77762 clone:Rs-H34
2.21.1.1.5169 OTU 2 seqs
prokMSA_id:3065 clone QSSC8L-2
prokMSA_id:25253 cyanobacterium QSSC8L-15 
2.21.1.1.5178 OTU 6 seqs
prokMSA_id:56232 Planktothricoides raciborskii strain: T1-6-2
prokMSA_id:58434 Planktothricoides raciborskii strain: NSLA4
prokMSA_id:58435 Planktothricoides raciborskii strain: OR1-1
prokMSA_id:58436 Planktothricoides raciborskii strain: NSLA3
prokMSA_id:58439 Planktothricoides raciborskii strain: NIES 207
prokMSA_id:58445 Planktothricoides raciborskii strain: INBaOR
2.21.1.1.5180 OTU 2 seqs
prokMSA_id:67883 Microcoleus steenstrupii clone 177-7A 
prokMSA_id:67884 Microcoleus steenstrupii clone 177-7B 
2.21.1.1.5184 OTU 6 seqs
prokMSA_id:3059 Arthrospira sp. PCC 8005
prokMSA_id:35094 Arthrospira fusiformis 
prokMSA_id:69038 Arthrospira sp. FACHB438 complete ; tRNA-Ile and tRNA-Ala ge
prokMSA_id:69039 Arthrospira sp. FACHB439 complete ; tRNA-Ile and tRNA-Ala ge
prokMSA_id:70913 Arthrospira sp. strain PCC8005
prokMSA_id:80667 Spirulina platensis 
2.21.1.1.5189 OTU 4 seqs
prokMSA_id:34024 Microcoleus vaginatus PCC 9802 
prokMSA_id:47726 Oscillatoria sancta 
prokMSA_id:74791 Oscillatoria sancta 
prokMSA_id:80595 Oscillatoria sp. PCC 7112 
2.21.1.1.5200 OTU 8 seqs
prokMSA_id:3048 Trichodesmium sp. NIBB 1067
prokMSA_id:3050 Trichodesmium hildebrandtii str. puff
prokMSA_id:3051 Trichodesmium thiebautii str. puff. AF091321
prokMSA_id:3052 Trichodesmium erythraeum
prokMSA_id:3053 Trichodesmium tenue
prokMSA_id:3054 Trichodesmium contortum
prokMSA_id:3055 Trichodesmium thiebautii
prokMSA_id:59107 Trichodesmium havanum str. F34-5 
2.21.1.1.5215 OTU 5 seqs
prokMSA_id:3062 Arthrospira sp. PCC 7345
prokMSA_id:3064 Lyngbya confervoides PCC 7419
prokMSA_id:40937 Lyngbya aestuarii 
prokMSA_id:43562 Lyngbya hieronymusii AF337650
prokMSA_id:71484 Arthrospira sp. genes tRNA-Ile tRNA-Ala 23S 
2.21.1.1.5220 OTU 1 seq
prokMSA_id:35777 Oscillatoria sp. KCTC AG10184 
2.21.1.1.5230 OTU 1 seq
prokMSA_id:51024 Phormidium subfuscum 
2.21.1.2 NOSTOC_GROUP 270 seqs
2.21.1.2.5004 OTU 2 seqs
prokMSA_id:24719 Anabaena flos-aquae strain AWQC 264A 
prokMSA_id:42168 Anabaena cylindrica NIES19 AF247592
2.21.1.2.5015 OTU 1 seq
prokMSA_id:83035 Chlorogloeopsis fritschii PCC 6912 
2.21.1.2.5020 OTU 2 seqs
prokMSA_id:71932 Scytonema hyalinum clone 144-3B + 159-3 
prokMSA_id:73317 Scytonema hyalinum clone 144-3C + 159-3 
2.21.1.2.5023 OTU 1 seq
prokMSA_id:44224 Scytonema sp. U-3-3 
2.21.1.2.5030 OTU 11 seqs
prokMSA_id:20777 Fischerella sp. BB98.1 strain SAG 2027
prokMSA_id:45088 Hapalosiphon welwitschii 
prokMSA_id:60570 clone B95 
prokMSA_id:60602 clone G01 
prokMSA_id:70960 Fischerella sp. CENA19 
prokMSA_id:80861 Fischerella muscicola 
prokMSA_id:81241 Cylindrospermum sp. CENA33 AY218831
prokMSA_id:82530 Fischerella major NIES 592 
prokMSA_id:83042 Fischerella sp. IAM M-263 
prokMSA_id:83639 Hapalosiphon delicatulus IAM M-266 
prokMSA_id:85287 Hapalosiphon sp. IAM M-264 
2.21.1.2.5027 OTU 2 seqs
prokMSA_id:56564 Calothrix sp. CCMEE 5085 
prokMSA_id:69425 Calothrix sp. CCMEE 5093 
2.21.1.2.5028 OTU 5 seqs
prokMSA_id:3101 Cylindrospermopsis raciborskii str. Solomon Dam Palm Island
prokMSA_id:3102 Cylindrospermopsis raciborskii str. Solomon Dam Palm Island
prokMSA_id:56040 Cylindrospermopsis raciborskii strain Aqc 
prokMSA_id:60833 Cylindrospermopsis raciborskii strain 05E 
prokMSA_id:72636 Cylindrospermopsis raciborskii strain LJ 
2.21.1.2.5047 OTU 14 seqs
prokMSA_id:19102 Anabaena circinalis AWQC307C 
prokMSA_id:19178 Anabaena circinalis AWT205B 
prokMSA_id:19855 Anabaena circinalis AWQC131C 
prokMSA_id:21891 Anabaena circinalis AWT204A 
prokMSA_id:23978 Anabaena circinalis AWQC150A 
prokMSA_id:30153 Anabaena circinalis AWQC271C 
prokMSA_id:36205 Anabaena affinis NIES40 
prokMSA_id:39090 Anabaena circinalis AWT02 
prokMSA_id:41035 Anabaena circinalis NIES41 
prokMSA_id:42825 Anabaena circinalis AWQC279B 
prokMSA_id:45448 Anabaena circinalis AWQC344B 
prokMSA_id:49853 Anabaena circinalis AWQC118C 
prokMSA_id:50849 Anabaena circinalis AWQC323B 
prokMSA_id:52583 Anabaena circinalis AWQC173A 
2.21.1.2.5057 OTU 77 seqs
prokMSA_id:3100 str. watersample from Lake Loosdrecht
prokMSA_id:3103 Nostoc punctiforme PCC 73102. AF027655
prokMSA_id:3105 Nostoc GSV224 str. GSV224. AF062637
prokMSA_id:3106 Nostoc ATCC53789 ATCC 53789. AF062638
prokMSA_id:3107 Nostoc TDI#AR94 str. TDI#AR94. AF027653
prokMSA_id:3108 Nostoc PCC9709 PCC 9709. AF027654
prokMSA_id:19807 Anabaena circinalis NIES-41 AB042859
prokMSA_id:20514 Anabaena circinalis AWQC331C 
prokMSA_id:20681 Aphanizomenon flos-aquae var. Klebahnii strain 218 AJ293123
prokMSA_id:20833 Anabaena solitaria strain 82
prokMSA_id:23120 Aphanizomenon flos-aquae strain NIES81
prokMSA_id:23731 Anabaena circinalis AWQC310F 
prokMSA_id:24012 Nostoc sp. strain 152 AJ133161
prokMSA_id:28360 Aphanizomenon flos-aquae strain NIES81 
prokMSA_id:30002 Anabaena flos-aquae NRC44-1 
prokMSA_id:31160 Aphanizomenon gracile strain PMC9402
prokMSA_id:31378 Spirirestis rafaelensis clone 143-2A + 159-1 AF334690
prokMSA_id:34443 Aphanizomenon sp. 'BC-Aph 9601' 
prokMSA_id:35407 Anabaena circinalis AWQC332H 
prokMSA_id:36941 Nostoc sp. AWT 203 AF317630
prokMSA_id:37515 Anabaena sp. 299 strain 299 AJ293106
prokMSA_id:38208 Anabaena flos-aquae AWQC112D 
prokMSA_id:40148 Aphanizomenon flos-aquae var. Klebahnii strain 83 AJ293122
prokMSA_id:40671 Anabaena crassa strain 215
prokMSA_id:41609 Anabaena flos-aquae strain PCC 9302 
prokMSA_id:42144 Anabaena solitaria NIES80 
prokMSA_id:43523 Anabaena spiroides strain PMC9702
prokMSA_id:43551 Anabaena planctonica strain 71
prokMSA_id:43633 Anabaena cf. Scheremetievi PMC9701 strain PMC9701
prokMSA_id:45965 Anabaena sp. strain A277 
prokMSA_id:46184 Anabaena spiroides AB047104
prokMSA_id:48627 Anabaena circinalis AWQC134C 
prokMSA_id:48640 Anabaena flos-aquae NRC525-17 
prokMSA_id:49357 Spirirestis rafaelensis clone 143-2B + 159-1 AF334691
prokMSA_id:53702 Aphanizomenon cf. flos-aquae PMC9501 strain PMC9501
prokMSA_id:54292 Anabaena Lemmermannii strain 256 AJ293113
prokMSA_id:55937 Nostoc sp. 'Nephroma parile cyanobiont 27' AF506252
prokMSA_id:56511 Nostoc sp. 'Peltigera venosa cyanobiont 15' AF506240
prokMSA_id:56651 Aphanizomenon sp. NH-5 
prokMSA_id:58838 Nostoc sp. 'Nephroma resupinatum cyanobiont 40' AF506265
prokMSA_id:58839 Nostoc sp. 'Nephroma resupinatum cyanobiont 38' AF506263
prokMSA_id:58845 Nostoc sp. 'Nephroma helveticum cyanobiont 33' AF506258
prokMSA_id:58852 Nostoc sp. 'Nephroma parile cyanobiont 26' AF506251
prokMSA_id:58853 Nostoc sp. 'Muscicolous cyanobiont 21' AF506246
prokMSA_id:58854 Nostoc sp. 'Peltigera praetextata cyanobiont 22' AF506247
prokMSA_id:58857 Nostoc sp. 'Lobaria hallii cyanobiont 19' AF506244
prokMSA_id:58858 Nostoc sp. 'Peltigera pruinosa cyanobiont 18' AF506243
prokMSA_id:58861 Nostoc sp. 'Peltigera pruinosa cyanobiont 14' AF506239
prokMSA_id:63340 Nostoc commune strain:M-13 AB088405
prokMSA_id:69813 Anabaena sp strain 90 
prokMSA_id:70327 Tolypothrix distorta clone 163-5B + 163-8 AF334694
prokMSA_id:71028 Anabaena Lemmermannii strain 202A2
prokMSA_id:71116 Aphanizomenon sp. 326 strain 326
prokMSA_id:71529 Nostoc sp. 'Parmeliella triptophylla cyanobiont 30' AF506255
prokMSA_id:71610 Aphanizomenon sp. strain TR183 
prokMSA_id:71971 Nostoc sp. 'Lobaria pulmonaria cyanobiont 36' AF506261
prokMSA_id:72914 Anabaena sp. strain A202A1 
prokMSA_id:72921 Aphanizomenon cf. gracile 271 strain 271
prokMSA_id:73017 Aphanizomenon flos-aquae strain PMC9401
prokMSA_id:73230 Nodularia spumigena strain NSLA02A4 AF268008
prokMSA_id:73276 Anabaena sp. strain 66A 
prokMSA_id:73348 Nostoc sp. 'Lobaria cyanobiont 34' AF506259
prokMSA_id:74202 Aphanizomenon sp. strain 202 
prokMSA_id:74222 Nostoc sp. 'Nephroma helveticum cyanobiont 37' AF506262
prokMSA_id:74246 Anabaena cf. cylindrica PMC9705 strain PMC9705
prokMSA_id:74363 Aphanizomenon flos-aquae strain PMC9707
prokMSA_id:74386 Anabaena sp. strain CYA83/1 
prokMSA_id:77866 Nostoc commune strain:KU002 AB088375
prokMSA_id:80843 Nostoc linckia AB074503
prokMSA_id:82666 Anabaena planctonica NIES 810 
prokMSA_id:83183 Nostoc commune country:Japan:Ishikawa Kanazawa Asano River A
prokMSA_id:86833 Nostoc sp. VI.5 AY112695
prokMSA_id:88320 Aphanizomenon flos-aquae str. 'Aph Zayi' AY196082
prokMSA_id:88923 Aphanizomenon issatschenkoi str. LEMCYA31 AY196088
prokMSA_id:89617 Aphanizomenon flos-aquae str. 'Aph Ku' AY196085
prokMSA_id:90379 Aphanizomenon flos-aquae str. 'Aph Inba' AY196083
prokMSA_id:96618 Nostoc sp. 'Bad Sachsa_BSC-16-N' AY422694
2.21.1.2.5072 OTU 23 seqs
prokMSA_id:3091 Nodularia BCNOD9427 str. BCNOD9427
prokMSA_id:19362 Nodularia sp. strain PCC7804 
prokMSA_id:20056 Nodularia harveyana strain PCC7804 
prokMSA_id:24739 Nodularia harveyana strain UTEX-B2093 
prokMSA_id:24971 Nodularia spumigena strain NSOR12 
prokMSA_id:32123 Nodularia spumigena strain NSGL02A10 
prokMSA_id:34133 Nodularia spumigena strain NSOR10 
prokMSA_id:34506 Nodularia spumigena strain NSBL05 
prokMSA_id:35491 Nodularia spumigena strain NSLA01 
prokMSA_id:37800 Nodularia spumigena strain L575 
prokMSA_id:40979 Nodularia spumigena strain NSOR04 
prokMSA_id:44512 Nodularia spumigena strain NSPH02 
prokMSA_id:46466 Nodularia spumigena 
prokMSA_id:46957 Nodularia spumigena strain UTEX-B2092 
prokMSA_id:51799 Nodularia spumigena strain PCC73104 
prokMSA_id:52046 Nodularia spumigena strain HEM 
prokMSA_id:70323 Nodularia spumigena strain BY1 
prokMSA_id:71066 Nodularia sp. strain BY1 
prokMSA_id:71521 Nodularia sp. strain GR8b 
prokMSA_id:71803 Nodularia sp. strain NSOR-12 
prokMSA_id:72177 Nodularia sp. strain NSPI-05 
prokMSA_id:72893 Nodularia sp. strain UP16f 
prokMSA_id:74014 Nodularia spumigena strain NSPH05A14 
2.21.1.2.5071 OTU 1 seq
prokMSA_id:3089 "Chlorogloeopsis" sp. str. HTF PCC 7518
2.21.1.2.5087 OTU 1 seq
prokMSA_id:25956 Microcoleus sociatus MPI 96MS.KID 
2.21.1.2.5103 OTU 3 seqs
prokMSA_id:3093 "Calothrix desertica" PCC 7102
prokMSA_id:3097 "Calothrix D253"
prokMSA_id:33939 Calothrix sp. strain PCC7714 
2.21.1.2.5115 OTU 1 seq
prokMSA_id:84987 Scytonema sp. IAM M-262 
2.21.1.2.5132 OTU 6 seqs
prokMSA_id:3084 Chroococcidiopsis sp. PCC 7203
prokMSA_id:23035 Chroococcidiopsis cubana strain SAG 39.79
prokMSA_id:34564 Chroococcidiopsis sp. BB82.3 strain SAG 2024
prokMSA_id:41207 Chroococcidiopsis thermalis 
prokMSA_id:72915 Chroococcidiopsis sp. BB84.1 strain SAG 2025
prokMSA_id:80235 Chroococcidiopsis sp. PCC 7431 
2.21.1.2.5131 OTU 1 seq
prokMSA_id:70663 Oscillatoria princeps strain: NIVA CYA 150
2.21.1.2.5142 OTU 1 seq
prokMSA_id:35188 Lyngbya sp. UTCC296 
2.21.1.2.5153 OTU 3 seqs
prokMSA_id:34545 cyanobacterium clone TAF-B69 
prokMSA_id:42801 cyanobacterium clone TAF-A32 AY038726
prokMSA_id:71940 cyanobacterium clone TAF-B14 
2.21.1.2.5168 OTU 1 seq
prokMSA_id:3104 clone WsCH31
2.21.1.2.5174 OTU 11 seqs
prokMSA_id:3099 Cylindrospermopsis raciborskii str. AWT205
prokMSA_id:60818 Cylindrospermopsis raciborskii strain Florida I 
prokMSA_id:60821 Cylindrospermopsis raciborskii strain Florida G 
prokMSA_id:60822 Cylindrospermopsis raciborskii strain Florida F 
prokMSA_id:60823 Cylindrospermopsis raciborskii strain Caia 
prokMSA_id:60824 Cylindrospermopsis raciborskii strain Florida D 
prokMSA_id:60826 Cylindrospermopsis raciborskii strain 4799 
prokMSA_id:60828 Cylindrospermopsis raciborskii strain Germany 2 
prokMSA_id:60831 Cylindrospermopsis raciborskii strain Germany 1 
prokMSA_id:60834 Cylindrospermopsis raciborskii strain 23B 
prokMSA_id:60840 Cylindrospermopsis raciborskii strain 09A 
2.21.1.2.5175 OTU 5 seqs
prokMSA_id:60830 Cylindrospermopsis raciborskii strain Brazil 2 
prokMSA_id:60832 Cylindrospermopsis raciborskii strain Brazil 1 
prokMSA_id:60838 Cylindrospermopsis raciborskii strain 24C 
prokMSA_id:60843 Cylindrospermopsis raciborskii strain Goon 
prokMSA_id:71065 Cylindrospermopsis raciborskii strain Mk 
2.21.1.2.5187 OTU 1 seq
prokMSA_id:3094 Phormidium ambiguum str. M-71
2.21.1.2.5191 OTU 5 seqs
prokMSA_id:28247 Nodularia harveyana strain CDAC1983/300 
prokMSA_id:29506 Cyanospira rippkae 
prokMSA_id:36477 Anabaena bergii 
prokMSA_id:45521 Anabaenopsis sp. PCC 9215 
prokMSA_id:60819 Anabaenopsis sp. 1A 
2.21.1.2.5194 OTU 1 seq
prokMSA_id:3096 clone QSSC8L-3
2.21.1.2.5199 OTU 15 seqs
prokMSA_id:3092 Nostoc muscorum PCC 7120
prokMSA_id:3095 "Anabaena variabilis" IAM M-3
prokMSA_id:28828 Anabaenopsis circularis NIES21 
prokMSA_id:29130 Anabaena variabilis NIES23 
prokMSA_id:44376 Nostoc sp. PCC 7120 complete genome section 7/19 AP003587
prokMSA_id:46727 Nostoc sp. PCC 7120 complete genome section 15/19
prokMSA_id:50880 Nostoc sp. PCC 7120 
prokMSA_id:52227 Nostoc sp. PCC 7120 complete genome section 18/19 AP003598
prokMSA_id:53088 Nostoc sp. PCC 7120 complete genome section 8/19 AP003588
prokMSA_id:53707 Nostoc sp. PCC 7120 complete genome NC_003272
prokMSA_id:79820 Anabaena variabilis 
prokMSA_id:80820 Calothrix brevissima 
prokMSA_id:81799 Anabaena flos-aquae UTCC 64 
prokMSA_id:83776 Tolypothrix sp. IAM M-259 
prokMSA_id:90192 Nostoc sp. HK-01 AB085687
2.21.1.2.5204 OTU 1 seq
prokMSA_id:32930 Phormidium murrayii 
2.21.1.2.5217 OTU 1 seq
prokMSA_id:80814 clone KD3-62 
2.21.1.3 GLOEOTHECE-GLOEOCAPSA_GROUP 202 seqs
2.21.1.3.4992 OTU 2 seqs
prokMSA_id:3159 Synechococcus ATCC700244 str. C9 ATCC 700244
prokMSA_id:47451 cyanobacterium clone SM1B04 
2.21.1.3.4989 OTU 2 seqs
prokMSA_id:3233 Spirulina P7 str. P7
prokMSA_id:50782 Spirulina sp. strain MPI S4 
2.21.1.3.5002 OTU 18 seqs
prokMSA_id:3244 Cyanothece sp. PCC 7418
prokMSA_id:3245 str. MPI 95AH10
prokMSA_id:3246 str. MPI 95AH13
prokMSA_id:3248 str. MPI 96N303
prokMSA_id:3249 str. MPI 96N304
prokMSA_id:3252 Dactylococcopsis sp. PCC 8305
prokMSA_id:17894 Euhalothece sp. strain MPI 96AL06 AJ000718
prokMSA_id:20240 Euhalothece sp. strain MPI 95AH11 AJ000717
prokMSA_id:22842 Cyanothece sp. PCC 7418 
prokMSA_id:25353 Aphanothece sp. strain ATCC 43922 AJ000721
prokMSA_id:31941 Euhalothece sp. LK-1 AF459426
prokMSA_id:36657 cyanobacterium AF266668
prokMSA_id:42841 cyanobacterium clone P6.5 AJ248314
prokMSA_id:43885 Euhalothece sp. strain Syn CIP22 AJ000720
prokMSA_id:45745 Euhalothece sp. strain MPI 96P402 AJ000722
prokMSA_id:55647 Aphanothece naegelii strain KCTC AG10042 
prokMSA_id:71416 Euhalothece sp. strain MPI 96AL03 AJ000719
prokMSA_id:92563 cyanobacterium DGGE band 8 AJ580973
2.21.1.3.5005 OTU 2 seqs
prokMSA_id:3157 Cyanothece sp. PCC 7424
prokMSA_id:48404 Cyanothece sp. PCC 7424 
2.21.1.3.5011 OTU 80 seqs
prokMSA_id:3112 Microcystis aeruginosa
prokMSA_id:3113 Microcystis aeruginosa
prokMSA_id:3114 Microcystis aeruginosa str. NIES87
prokMSA_id:3119 Microcystis aeruginosa
prokMSA_id:3121 Microcystis wesenbergii
prokMSA_id:3122 Microcystis viridis
prokMSA_id:3130 Microcystis viridis str. TAC17. AB012328
prokMSA_id:3131 Microcystis viridis str. TAC78. AB012331
prokMSA_id:3132 Microcystis aeruginosa str. TAC71. AB012332
prokMSA_id:3133 Microcystis wesenbergii str. TAC38. AB012334
prokMSA_id:3134 Microcystis novacekii str. TAC20
prokMSA_id:3135 Microcystis viridis str. NIES102
prokMSA_id:3161 Microcystis aeruginosa PCC 7806. Z28699
prokMSA_id:3162 Microcystis sp. str. KND9506
prokMSA_id:3163 Microcystis sp. str. P.R.China. AB012326
prokMSA_id:3164 Microcystis sp. str. P.R.China. AB012327
prokMSA_id:3165 Microcystis sp. str. Thailand
prokMSA_id:3166 Microcystis sp. str. Thailand
prokMSA_id:3167 Microcystis aeruginosa str. TAC86
prokMSA_id:3168 Microcystis wesenbergii str. TAC52
prokMSA_id:3169 Microcystis novacekii str. TAC65
prokMSA_id:3170 Microcystis ichthyoblabe str. TAC48
prokMSA_id:3171 Microcystis aeruginosa str. TAC170
prokMSA_id:3177 Microcystis ichthyoblabe
prokMSA_id:3191 Microcystis aeruginosa PCC 7806. U03402
prokMSA_id:3213 Microcystis sp. str. AWT139
prokMSA_id:3235 Microcystis wesenbergii
prokMSA_id:3236 Microcystis aeruginosa str. NIES98
prokMSA_id:3237 Microcystis wesenbergii str. NIES111
prokMSA_id:3241 Microcystis aeruginosa
prokMSA_id:16345 Microcystis aeruginosa strain UWOCC C4 AF139316
prokMSA_id:16837 Microcystis sp. 'UWOCC BauldE' strain UWOCC BauldE AF139312
prokMSA_id:17617 Microcystis aeruginosa strain UWOCC M4 
prokMSA_id:17755 Microcystis aeruginosa strain UWOCC MR-B AF139322
prokMSA_id:18186 Microcystis sp. 'UWOCC Q' 
prokMSA_id:18594 Microcystis aeruginosa strain UWOCC AubB1 
prokMSA_id:18622 Microcystis aeruginosa strain UWOCC RID-1 AF139317
prokMSA_id:19980 Microcystis flos-aquae strain UWOCC C2 AF139328
prokMSA_id:21664 Microcystis aeruginosa strain UWOCC Bauld5A AF139305
prokMSA_id:24627 Microcystis aeruginosa strain UWOCC S-15-b AF139325
prokMSA_id:25608 Microcystis ichthyoblabe 
prokMSA_id:26154 Microcystis sp. strain 269 
prokMSA_id:26766 Microcystis aeruginosa strain UWOCC AK-1 AF139303
prokMSA_id:27566 Microcystis sp. 'UWOCC K' AF139309
prokMSA_id:27606 Microcystis aeruginosa AB035549
prokMSA_id:27662 Microcystis aeruginosa strain UWOCC P3 AF139314
prokMSA_id:28391 Microcystis wesenbergii AB035553
prokMSA_id:28651 Microcystis aeruginosa strain UWOCC C1 
prokMSA_id:29068 Microcystis novacekii 
prokMSA_id:29230 Microcystis aeruginosa strain UWOCC E7 AF139326
prokMSA_id:29257 Microcystis aeruginosa strain UWOCC MR-C AF139323
prokMSA_id:34524 Microcystis aeruginosa strain UWOCC C5 
prokMSA_id:35129 Microcystis flos-aquae strain UWOCC C3 AF139329
prokMSA_id:35467 Microcystis aeruginosa strain UWOCC 84/1 AF139301
prokMSA_id:37777 Microcystis sp. strain GL280641 
prokMSA_id:37828 Microcystis aeruginosa strain UWOCC AKGV- AF139302
prokMSA_id:38719 Microcystis sp. 'UWOCC MSU28-1' AF139310
prokMSA_id:39102 Microcystis aeruginosa strain UWOCC 017 AF139294
prokMSA_id:39573 Microcystis aeruginosa strain PCC 7820 AF139300
prokMSA_id:39760 Microcystis sp. 'UWOCC F' strain UWOCC F AF139308
prokMSA_id:40291 Microcystis flos-aquae strain UWOCC N 
prokMSA_id:40536 Microcystis aeruginosa strain UWOCC MR-A AF139320
prokMSA_id:40548 Microcystis aeruginosa strain UWOCC 006 
prokMSA_id:40647 Microcystis aeruginosa strain UWOCC MR-B AF139321
prokMSA_id:41065 Microcystis aeruginosa strain UWOCC MSU28-2 AF139313
prokMSA_id:42696 Microcystis sp. strain NIES104 
prokMSA_id:43227 Microcystis sp. strain 199 
prokMSA_id:43518 Microcystis sp. 'UWOCC BauldB' AF139306
prokMSA_id:45553 Microcystis viridis AB035552
prokMSA_id:47759 Microcystis aeruginosa strain PCC 7806 AF139299
prokMSA_id:48796 Microcystis aeruginosa strain UWOCC 019 
prokMSA_id:49423 Microcystis aeruginosa strain UWOCC 024 
prokMSA_id:49574 Microcystis sp. 'UWOCC CBS' strain UWOCC CBS AF139307
prokMSA_id:50935 Microcystis aeruginosa strain UWOCC 023 AF139296
prokMSA_id:51805 Microcystis aeruginosa strain UWOCC MR-D AF139324
prokMSA_id:52503 Microcystis aeruginosa strain UWOCC 001 AF139292
prokMSA_id:52726 Microcystis aeruginosa strain UWOCC 026 AF139298
prokMSA_id:60879 clone SG2-6 
prokMSA_id:70007 Microcystis sp. strain 130 
prokMSA_id:71454 Microcystis sp. strain PCC7941 
2.21.1.3.5017 OTU 1 seq
prokMSA_id:62923 Synechococcus sp. PCC 8806 
2.21.1.3.5013 OTU 4 seqs
prokMSA_id:24354 Oscillatoria sp. 3-SLR7 
prokMSA_id:33445 Oscillatoria sp. UTCC487 
prokMSA_id:37748 Oscillatoria cf. laetevirens Baja-Osc-1 AF268490
prokMSA_id:43803 Oscillatoria sp. 1-SLR2 AF230966
2.21.1.3.5031 OTU 4 seqs
prokMSA_id:67712 Cyanothece sp. SKTU126 genes Ile-tRNA 23S and complete 
prokMSA_id:67714 Gloeothece sp. KO68DGA genes Ile-tRNA 23S and complete 
prokMSA_id:67719 Gloeothece sp. KO11DG genes r Ile-tRNA 23S and complete 
prokMSA_id:67720 Gloeothece sp. SK40 genes Ile-tRNA 23S and complete 
2.21.1.3.5034 OTU 1 seq
prokMSA_id:56680 Spirulina subsalsa complete ; tRNA-Ile complete ; and 23S 
2.21.1.3.5046 OTU 1 seq
prokMSA_id:3208 Xenococcus PCC7305 PCC 7305
2.21.1.3.5044 OTU 1 seq
prokMSA_id:3206 "Oscillatoria corallinae" str. CJ1 SAG8.92
2.21.1.3.5049 OTU 1 seq
prokMSA_id:59109 Oscillatoria spongeliae 520bg 
2.21.1.3.5050 OTU 2 seqs
prokMSA_id:3211 unnamed organism
prokMSA_id:3230 unnamed organism
2.21.1.3.5054 OTU 1 seq
prokMSA_id:17732 cyanobacterium LR-3L 
2.21.1.3.5052 OTU 1 seq
prokMSA_id:3231 Cyanobacterium stanieri PCC 7202
2.21.1.3.5085 OTU 1 seq
prokMSA_id:41164 prochlorophyte CtaxPhil-25 
2.21.1.3.5081 OTU 1 seq
prokMSA_id:29085 Synechocystis PCC6308 
2.21.1.3.5086 OTU 1 seq
prokMSA_id:3232 Spirulina subsalsa str. M-223
2.21.1.3.5090 OTU 3 seqs
prokMSA_id:39534 Halospirulina sp.'MPI S3' 
prokMSA_id:71513 Halospirulina tapeticola strain CCC Baja-95 Cl.2
prokMSA_id:72932 Halospirulina sp.'CCC Baja-95 Cl.3' 
2.21.1.3.5093 OTU 1 seq
prokMSA_id:49732 cyanobacterium clone CD1401B9 
2.21.1.3.5104 OTU 2 seqs
prokMSA_id:44601 cyanobacterium clone SM2A06 
prokMSA_id:74772 cyanobacterium clone SM1D12 
2.21.1.3.5113 OTU 3 seqs
prokMSA_id:33394 cyanobacterium 
prokMSA_id:34157 cyanobacterium 
prokMSA_id:40423 cyanobacterium 
2.21.1.3.5116 OTU 3 seqs
prokMSA_id:3116 Merismopedia glauca str. B1448-1
prokMSA_id:27910 Synechocystis PCC6702 
prokMSA_id:82137 Synechocystis sp. PCC 6803 
2.21.1.3.5118 OTU 1 seq
prokMSA_id:26120 Oscillatoria sp. MPI 990BR03 
2.21.1.3.5127 OTU 1 seq
prokMSA_id:17093 Gloeocapsa PCC73106 
2.21.1.3.5134 OTU 2 seqs
prokMSA_id:24455 Chroococcidiopsis sp. PCC 6712 strain PCC 6712
prokMSA_id:42907 Chroococcidiopsis PCC6712 
2.21.1.3.5138 OTU 2 seqs
prokMSA_id:35765 Chroococcidiopsis sp. BB96.1 strain SAG 2026
prokMSA_id:71326 Chroococcidiopsis sp. BB79.2 SAG 2023
2.21.1.3.5144 OTU 3 seqs
prokMSA_id:25314 cyanobacterium clone SM1D04 
prokMSA_id:28685 cyanobacterium clone SM1F09 
prokMSA_id:40359 cyanobacterium clone SM1C10 
2.21.1.3.5148 OTU 4 seqs
prokMSA_id:16431 Cyanobacterial symbiont MY4 host: Mycale sp. strain MY4
prokMSA_id:17869 Cyanobacterial symbiont MY2 host: Mycale sp. strain MY2
prokMSA_id:39596 Cyanobacterial symbiont MY3 host: Mycale sp. strain MY3
prokMSA_id:40771 Cyanobacterial symbiont MY17 host: Mycale sp. strain MY17
2.21.1.3.5152 OTU 2 seqs
prokMSA_id:28876 Stanieria cyanosphaera 
prokMSA_id:48280 Stanieria cyanosphaera 
2.21.1.3.5151 OTU 2 seqs
prokMSA_id:16864 cyanobacterium 
prokMSA_id:26117 cyanobacterium 128-56 
2.21.1.3.5162 OTU 3 seqs
prokMSA_id:22139 Lyngbya sp. NIH309 
prokMSA_id:35119 Lyngbya sp. VP417b 
prokMSA_id:46480 Lyngbya sp. VP417a 
2.21.1.3.5167 OTU 5 seqs
prokMSA_id:3158 Cyanothece ATCC51142 ATCC 51142
prokMSA_id:27671 Symbiont of Climacodium frauenfeldianum 
prokMSA_id:55668 Gloeocapsa sp. KO38CU6 genes Ile-tRNA 23S and complete 
prokMSA_id:67713 Gloeocapsa sp. KO30D1 genes Ile-tRNA 23S and complete 
prokMSA_id:67715 Gloeocapsa sp. KO20B5 genes Ile-tRNA 23S and complete 
2.21.1.3.5165 OTU 5 seqs
prokMSA_id:21210 Symploca sp. VP642c 
prokMSA_id:36962 Symploca PCC8002 
prokMSA_id:45181 Symploca sp. VP642a AY032932
prokMSA_id:52817 Symploca sp. VP642b 
prokMSA_id:53953 Symploca sp. VP377 
2.21.1.3.5172 OTU 1 seq
prokMSA_id:69683 Cyanobacterium sp. MBIC10216 
2.21.1.3.5186 OTU 1 seq
prokMSA_id:83349 cyanobacterium clone ST01-SN2C 
2.21.1.3.5201 OTU 1 seq
prokMSA_id:28368 glaucocystophycean clone CD5A12 ; chloroplast chloroplast pr
2.21.1.3.5198 OTU 17 seqs
prokMSA_id:3118 Myxosarcina sp. PCC 7312. NONE
prokMSA_id:3207 Pleurocapsa sp. PCC 7516
prokMSA_id:24335 Pleurocapsa PCC7319 
prokMSA_id:24838 Chroococcidiopsis sp. CCMP1489 strain CCMP1489
prokMSA_id:42381 Myxosarcina sp. PCC 7312 strain PCC 7312
prokMSA_id:45178 Myxosarcina sp. PCC 7325 strain PCC 7325 AJ344562
prokMSA_id:45775 Dermocarpella incrassata strain SAG 29.84
prokMSA_id:46080 Stanieria PCC7301 
prokMSA_id:46462 Pleurocapsa minor strain SAG 4.99
prokMSA_id:69285 Dermocarpa sp. MBIC10056 AB058218
prokMSA_id:69707 Dermocarpa sp. MBIC10768 AB058287
prokMSA_id:69734 Dermocarpa sp. MBIC10001 
prokMSA_id:71088 Dermocarpa sp. MBIC10765 AB058284
prokMSA_id:71478 Dermocarpa sp. MBIC10766 AB058285
prokMSA_id:74148 Dermocarpa sp. MBIC10004 
prokMSA_id:80524 Xenococcus sp. PCC 7307 
prokMSA_id:80822 Pleurocapsa sp. PCC 7314 
2.21.1.3.5202 OTU 1 seq
prokMSA_id:3240 Gloeothece membranacea
2.21.1.3.5207 OTU 8 seqs
prokMSA_id:3124 Synechococcus sp. PCC 7003
prokMSA_id:3125 "Oscillatoria rosea" str. M-220
prokMSA_id:3126 Synechococcus sp. PCC 7117
prokMSA_id:3127 Synechococcus sp. PCC 73109
prokMSA_id:17081 Synechococcus sp. strain PCC 7002
prokMSA_id:42888 Synechococcus sp
prokMSA_id:55776 Synechococcus sp. PCC 8807 
prokMSA_id:71525 Synechococcus sp. PH40 
2.21.1.3.5208 OTU 1 seq
prokMSA_id:3247 Halothece 'MPI 96P605' str. MPI 96P605
2.21.1.3.5213 OTU 1 seq
prokMSA_id:3253 Prochloron didemni
2.21.1.3.5218 OTU 1 seq
prokMSA_id:49254 Pleurocapsa PCC7327 
2.21.1.3.5219 OTU 3 seqs
prokMSA_id:62922 Synechococcus sp. HOG 
prokMSA_id:62924 Synechococcus sp. UH7 
prokMSA_id:62925 Synechococcus sp. T71 
2.21.1.3.5238 OTU 1 seq
prokMSA_id:35028 Cyanothece sp. PCC 8801 
2.21.1.4 LEPTOLYNGBYA_GROUP 34 seqs
2.21.1.4.4978 OTU 1 seq
prokMSA_id:70492 LPP-group MBIC10087 
2.21.1.4.4991 OTU 2 seqs
prokMSA_id:36979 Oscillatoria sp. J-24-Osc 
prokMSA_id:71468 Oscillatoria sp. OH25 
2.21.1.4.4996 OTU 1 seq
prokMSA_id:31912 Fischerella muscicola 
2.21.1.4.4995 OTU 3 seqs
prokMSA_id:70722 Oscillatoria amphigranulata strain 19-2 AF317504
prokMSA_id:73716 Oscillatoria amphigranulata strain 11-3 AF317503
prokMSA_id:74082 Oscillatoria amphigranulata strain 23-3 
2.21.1.4.5025 OTU 3 seqs
prokMSA_id:3276 unnamed organism
prokMSA_id:3277 unnamed organism
prokMSA_id:94377 Antarctic cyanobacterium clone Fr397 complete AY151735
2.21.1.4.5070 OTU 1 seq
prokMSA_id:3263 clone OPI-8
2.21.1.4.5067 OTU 1 seq
prokMSA_id:3260 unnamed organism
2.21.1.4.5074 OTU 1 seq
prokMSA_id:3268 clone QSSC8L-6
2.21.1.4.5075 OTU 1 seq
prokMSA_id:3269 clone QSSC8L-8
2.21.1.4.5084 OTU 1 seq
prokMSA_id:51795 Phormidium tenue 
2.21.1.4.5091 OTU 1 seq
prokMSA_id:3274 unnamed organism
2.21.1.4.5126 OTU 3 seqs
prokMSA_id:67764 cyanobacterium TFWG 
prokMSA_id:72108 Leptolyngbya sp. PCC 9207 AF317506
prokMSA_id:74282 Leptolyngbya sp. PCC 9221 AF317507
2.21.1.4.5157 OTU 9 seqs
prokMSA_id:3279 Leptolyngbya boryanum PCC 73110. NONE
prokMSA_id:3280 Leptolyngbya foveolarum str. Komarek 1964/112
prokMSA_id:3281 "Plectonema boryanum" UTEX 485
prokMSA_id:3282 "Oscillatoria" sp. str. M-117
prokMSA_id:3283 Phormidium sp. str. M-99
prokMSA_id:39175 Phormidium tenue 
prokMSA_id:41034 Phormidium tenue AF337652
prokMSA_id:43289 Phormidium molle 
prokMSA_id:45010 Phormidium pachydematicum 
2.21.1.4.5188 OTU 1 seq
prokMSA_id:57549 Acaryochloris marina strain MBIC 11017 
2.21.1.4.5197 OTU 4 seqs
prokMSA_id:3255 Chamaesiphon subglobosus PCC 7430
prokMSA_id:3261 unnamed organism
prokMSA_id:3262 unnamed organism
prokMSA_id:40204 cyanobacterium clone TAF-B74 AY038733
2.21.1.4.5205 OTU 1 seq
prokMSA_id:40082 Synechococcus PCC7902 
2.21.1.6 PHORMIDIUM_GROUP 15 seqs
2.21.1.6.4985 OTU 1 seq
prokMSA_id:85621 cyanobacterium clone FBP290 
2.21.1.6.4993 OTU 1 seq
prokMSA_id:38561 Oscillatoria sp
2.21.1.6.5010 OTU 1 seq
prokMSA_id:3289 str. QSSC5cya
2.21.1.6.5064 OTU 2 seqs
prokMSA_id:3288 "Oscillatoria neglecta" str. M-82
prokMSA_id:34894 Leptolyngbya PCC7104 
2.21.1.6.5069 OTU 1 seq
prokMSA_id:56488 LPP-group MBIC10086 
2.21.1.6.5190 OTU 7 seqs
prokMSA_id:3259 Synechococcus sp. PCC 7335. AB015062
prokMSA_id:3290 str. QSSC8cya. AF170758
prokMSA_id:3293 "Plectonema F3" str. F3
prokMSA_id:69558 Phormidium sp. MBIC10002 
prokMSA_id:73558 LPP-group MBIC10597 
prokMSA_id:83595 cyanobacterium clone FBP256 
prokMSA_id:94566 Antarctic cyanobacterium clone BGC-Fr054 complete AY151722
2.21.1.6.5210 OTU 1 seq
prokMSA_id:85304 cyanobacterium clone FBP403 
2.21.1.6.5211 OTU 1 seq
prokMSA_id:3287 Phormidium minutum str. D5
2.21.1.8 MICROCYSTIS_GROUP 8 seqs
2.21.1.8.5048 OTU 1 seq
prokMSA_id:17697 Planktothrix sp. FP1 
2.21.1.8.5083 OTU 1 seq
prokMSA_id:3304 clone LD7
2.21.1.8.5088 OTU 1 seq
prokMSA_id:3307 Microcystis elabens
2.21.1.8.5125 OTU 5 seqs
prokMSA_id:3299 Synechococcus sp. PCC 6301. X03538
prokMSA_id:3303 Synechococcus sp. PCC 7942
prokMSA_id:28050 Synechococcus sp. PCC 7942 
prokMSA_id:50219 Synechococcus PCC7943 
prokMSA_id:81974 Synechococcus sp. BD-1 
2.21.1.9 PRC.MARINUS_GROUP 192 seqs
2.21.1.9.5001 OTU 1 seq
prokMSA_id:60158 clone TK09
2.21.1.9.5051 OTU 1 seq
prokMSA_id:37044 soil PBS-III-24 
2.21.1.9.5076 OTU 189 seqs
prokMSA_id:3315 Sargasso Sea clone SAR 139
prokMSA_id:3320 Sargasso Sea clone SAR 7
prokMSA_id:3328 str. watersample from Lake Loosdrecht
prokMSA_id:3333 Microcystis holsatica str. NIES43
prokMSA_id:3335 Synechococcus PCC6307 PCC 6307. AF001477
prokMSA_id:3338 Synechococcus WH8101 str. WH8101
prokMSA_id:3339 Synechococcus WH7803 str. WH7803
prokMSA_id:3341 Synechococcus sp. str. Biwa-G0
prokMSA_id:3343 str. ACE
prokMSA_id:3344 str. PENDANT
prokMSA_id:3345 str. ABRAXAS
prokMSA_id:3346 Synechococcus sp. PCC 7001. AB015058
prokMSA_id:3347 Prochlorococcus MIT9303 str. MIT9303
prokMSA_id:3348 Prochlorococcus MIT9313 str. MIT9313
prokMSA_id:3350 Sargasso Sea clone SAR 6
prokMSA_id:3351 Prochlorococcus MIT9201 str. MIT9201
prokMSA_id:3352 Prochlorococcus MIT9202 str. MIT9202
prokMSA_id:3353 Prochlorococcus MIT9211 str. MIT9211
prokMSA_id:3372 str. P211
prokMSA_id:3373 str. P212
prokMSA_id:3374 Microcystis elabens str. NIES42
prokMSA_id:3375 Prochlorococcus marinus PCC 9511
prokMSA_id:3376 Prochlorococcus MIT9302 str. MIT9302
prokMSA_id:3377 Prochlorococcus MIT9312 str. MIT9312
prokMSA_id:16741 Synechococcus PCC7918 AF216947
prokMSA_id:21853 Synechococcus sp. WH 7803 AF311291
prokMSA_id:22119 cyanobacterium clone:B7
prokMSA_id:22911 Synechococcus PCC9005 AF216950
prokMSA_id:23065 Synechococcus NAC1-5 
prokMSA_id:28802 Synechococcus sp. strain GL150636 
prokMSA_id:28869 Cyanobacterium 5X15 
prokMSA_id:29390 Synechococcus sp. PS680 
prokMSA_id:30769 Prochlorococcus marinus subsp. pastoris str. NATL2 
prokMSA_id:30851 Synechococcus sp. PS721 AF216954
prokMSA_id:33102 Prochlorococcus marinus subsp. pastoris str. NATL1 
prokMSA_id:33530 Synechococcus sp. WH 8018 
prokMSA_id:33656 Synechococcus sp. PS723 AF216955
prokMSA_id:37989 Synechococcus PCC7009 AF216945
prokMSA_id:38616 Synechococcus sp. PS715 
prokMSA_id:38890 Prochlorococcus marinus str. TAK9803-2 
prokMSA_id:45601 Synechococcus sp. PS717 AF216953
prokMSA_id:46334 Synechococcus PCC7920 
prokMSA_id:46500 Synechococcus sp. AB4192 
prokMSA_id:46690 Synechococcus PCC6904 AF216944
prokMSA_id:47172 Synechococcus sp. WH 8103 AF311293
prokMSA_id:49782 Prochlorococcus marinus str. EQPAC1 
prokMSA_id:52928 Synechococcus sp. BO8807 ; internal transcribed spacer 1 com
prokMSA_id:53000 Synechococcus sp. BS4 ; internal transcribed spacer 1 comple
prokMSA_id:53150 Synechococcus sp. BO8801 ; internal transcribed spacer 1 com
prokMSA_id:53206 Synechococcus sp. LBB3 ; internal transcribed spacer 1 compl
prokMSA_id:53228 Synechococcus sp. BO8806 ; internal transcribed spacer 1 com
prokMSA_id:53283 Synechococcus sp. BGS171 ; internal transcribed spacer 1 com
prokMSA_id:53331 Synechococcus rubescens ; internal transcribed spacer 1 comp
prokMSA_id:53471 Synechococcus sp. BS20 ; internal transcribed spacer 1 compl
prokMSA_id:53495 Synechococcus sp. LM94 ; internal transcribed spacer 1 compl
prokMSA_id:53650 Synechococcus sp. BO0014 ; internal transcribed spacer 1 com
prokMSA_id:53839 Synechococcus sp. BO981502 ; internal transcribed spacer 1 c
prokMSA_id:53923 Synechococcus sp. BO9404 ; internal transcribed spacer 1 com
prokMSA_id:54164 Synechococcus sp. BO984127 ; internal transcribed spacer 1 c
prokMSA_id:54219 Synechococcus sp. BO8805 ; internal transcribed spacer 1 com
prokMSA_id:54464 Synechococcus sp. LBP1 ; internal transcribed spacer 1 compl
prokMSA_id:54469 Synechococcus sp. BO983115 ; internal transcribed spacer 1 c
prokMSA_id:54577 Synechococcus sp. BS5 ; internal transcribed spacer 1 comple
prokMSA_id:54601 Synechococcus sp. LBG2 ; internal transcribed spacer 1 compl
prokMSA_id:58392 Synechococcus sp. MB11A04 ; tRNA-Ile and tRNA-Ala genes comp
prokMSA_id:58393 Synechococcus sp. MB11E09 ; tRNA-Ile and tRNA-Ala genes comp
prokMSA_id:59293 Synechococcus sp. WH 8012 
prokMSA_id:62926 Synechococcus sp. PCC 8966 AF448072
prokMSA_id:62927 Synechococcus sp. PCC 8916 AF448071
prokMSA_id:62928 Synechococcus sp. PS845 
prokMSA_id:62929 Synechococcus sp. PS840 
prokMSA_id:62930 Synechococcus sp. PS838 
prokMSA_id:62931 Synechococcus sp. TAGS 
prokMSA_id:62932 Synechococcus sp. TAG AF448066
prokMSA_id:62933 Synechococcus sp. NAN 
prokMSA_id:62934 Synechococcus sp. HOS AF448064
prokMSA_id:62935 Synechococcus sp. UBR 
prokMSA_id:62937 Synechococcus sp. T7cc1 AF448061
prokMSA_id:62939 Synechococcus sp. 1002 
prokMSA_id:62940 Synechococcus sp. IR48 
prokMSA_id:68984 Prochlorococcus sp. MB11F02 ; tRNA-Ile and tRNA-Ala genes co
prokMSA_id:68986 Prochlorococcus sp. MB11E08 ; tRNA-Ile and tRNA-Ala genes co
prokMSA_id:69178 Synechococcus sp. MBIC10459 
prokMSA_id:69200 Synechococcus sp. MW28B3 complete AY151235
prokMSA_id:69228 Synechococcus sp. MBIC10224 AB058250
prokMSA_id:69485 Synechococcus sp. MW26A5 complete AY151234
prokMSA_id:69531 Synechococcus sp. MW76B2 complete AY151245
prokMSA_id:69544 Synechococcus sp. MW73D5 complete AY151241
prokMSA_id:69548 Synechococcus sp. MW99B6 complete 
prokMSA_id:69574 Synechococcus sp. MW72C6 complete AY151240
prokMSA_id:69638 Synechococcus sp. MW101C3 complete 
prokMSA_id:69725 Synechococcus sp. MW15-2 complete AY151232
prokMSA_id:69965 Synechococcus sp. MW74D6 complete AY151242
prokMSA_id:70279 Synechococcus sp. MW25B5 complete AY151233
prokMSA_id:70431 Synechococcus sp. MLS1228cl3 
prokMSA_id:70534 Synechococcus sp. MW77D1 complete AY151246
prokMSA_id:70666 Synechococcus sp. MW6B4 complete AY151239
prokMSA_id:70678 Synechococcus sp. MBIC10089 
prokMSA_id:71118 Synechococcus sp. MW10#1 complete 
prokMSA_id:71256 Synechococcus sp. MW73B4 complete AY151250
prokMSA_id:71906 Synechococcus sp. MBIC10456 
prokMSA_id:72087 Synechococcus sp. MW4C3 complete 
prokMSA_id:72387 Synechococcus sp. MW32B5 complete 
prokMSA_id:72502 clone Sta0-25
prokMSA_id:72834 Synechococcus sp. MW6C6 complete AY151243
prokMSA_id:73727 Synechococcus sp. MBIC10007 
prokMSA_id:74342 Synechococcus sp. MW33B4 complete AY151237
prokMSA_id:74359 Synechococcus sp. MW97C4 complete 
prokMSA_id:74397 Synechococcus sp. MW74D3 complete AY151244
prokMSA_id:79102 clone ZA3242c 
prokMSA_id:79129 clone ZA3421c 
prokMSA_id:79192 clone ZA3833c 
prokMSA_id:79250 Cyanobium sp. LB03 
prokMSA_id:79350 clone ZA3703c 
prokMSA_id:79456 Synechococcus sp. clone 46Fr 
prokMSA_id:79569 clone ZA3803c 
prokMSA_id:81048 Synechococcus sp. clone A715009 AY125366
prokMSA_id:81268 Synechococcus sp. clone A315006 AY125377
prokMSA_id:81277 Synechococcus sp. clone A715016 
prokMSA_id:81379 Synechococcus sp. clone A715001 
prokMSA_id:81393 Synechococcus sp. clone A315003 
prokMSA_id:81413 Synechococcus sp. clone A715015 
prokMSA_id:81449 Synechococcus sp. clone A715003 
prokMSA_id:81631 Synechococcus sp. clone A715005 
prokMSA_id:81638 Synechococcus sp. clone A315025 
prokMSA_id:81662 Synechococcus sp. clone A315023 
prokMSA_id:81715 Synechococcus sp. clone A715004 
prokMSA_id:81769 Synechococcus sp. clone A715013 
prokMSA_id:81828 Synechococcus sp. clone A315002 
prokMSA_id:81859 Synechococcus sp. clone A715006 
prokMSA_id:81872 Synechococcus sp. clone A715012 
prokMSA_id:81898 Synechococcus sp. clone A315010 
prokMSA_id:82121 Synechococcus sp. clone A715011 
prokMSA_id:82146 Synechococcus sp. clone A315004 
prokMSA_id:82220 Synechococcus sp. clone A715014 
prokMSA_id:82249 Synechococcus sp. clone A315011 
prokMSA_id:82268 Synechococcus sp. clone A715002 
prokMSA_id:82280 Synechococcus sp. clone A315008 
prokMSA_id:82376 Synechococcus sp. clone A315020 
prokMSA_id:82398 Synechococcus sp. clone A315026 
prokMSA_id:82763 Synechococcus sp. CC9311 
prokMSA_id:82788 Synechococcus sp. WH 5701 
prokMSA_id:83008 Synechococcus sp. RS9918 AY172828
prokMSA_id:83014 Synechococcus sp. RS9904 AY172814
prokMSA_id:83015 Synechococcus sp. RS9905 AY172815
prokMSA_id:83121 Synechococcus sp. Minos12 
prokMSA_id:83222 Synechococcus sp. RS9902 AY172812
prokMSA_id:83391 Synechococcus sp. WH 8016 
prokMSA_id:83400 Synechococcus sp. MH305 
prokMSA_id:83422 Synechococcus sp. WH 8002 AY172833
prokMSA_id:83438 Synechococcus sp. RS9910 AY172820
prokMSA_id:83522 Synechococcus sp. MH301 
prokMSA_id:83566 Synechococcus sp. RS9907 AY172817
prokMSA_id:84053 Synechococcus sp. Oli31 AY172810
prokMSA_id:84144 Cyanobium sp. Bright 
prokMSA_id:84148 Synechococcus sp. MW74D3 AY224200
prokMSA_id:84700 Synechococcus sp. Minos01-AC6F1 
prokMSA_id:84712 Synechococcus sp. CC9605 
prokMSA_id:84801 Synechococcus sp. RS9919 AY172829
prokMSA_id:84810 Synechococcus sp. RS9909 
prokMSA_id:85023 Synechococcus sp. Max42 AY172805
prokMSA_id:85105 Synechococcus sp. Almo3 
prokMSA_id:85112 Synechococcus sp. Dim AY172803
prokMSA_id:85143 Synechococcus sp. RS9911 AY172821
prokMSA_id:85276 Synechococcus sp. WH 8109 
prokMSA_id:85406 Synechococcus sp. RS9920 
prokMSA_id:85509 Synechococcus sp. RS9901 AY172811
prokMSA_id:85659 Synechococcus sp. RS9915 AY172825
prokMSA_id:85670 Synechococcus sp. RS9914 
prokMSA_id:85703 Synechococcus sp. RS9913 
prokMSA_id:85806 Synechococcus sp. RS9912 AY172822
prokMSA_id:85960 Synechococcus sp. Eum14 AY172804
prokMSA_id:85989 Synechococcus sp. RS9916 AY172826
prokMSA_id:86023 Synechococcus sp. RS9906 
prokMSA_id:86155 Synechococcus sp. RS9903 AY172813
prokMSA_id:86201 Synechococcus sp. Minos02-C2C2 AY172809
prokMSA_id:86476 Synechococcus sp. Minos11 
prokMSA_id:86621 Synechococcus sp. RS9908 AY172818
prokMSA_id:86649 Synechococcus sp. WH 8020 
prokMSA_id:88136 Prochlorococcus marinus subsp. marinus str. CCMP1375 complet
prokMSA_id:89557 Prochlorococcus marinus subsp. marinus str. CCMP1375 section
prokMSA_id:91747 clone K2-30-3 AY344431
prokMSA_id:92037 Prochlorococcus marinus subsp. pastoris str. CCMP1378 comple
prokMSA_id:92092 Prochlorococcus marinus MED4 complete genome; segment 1/5 BX
prokMSA_id:92221 Synechococcus sp. WH 8102 complete genome NC_005070
prokMSA_id:92417 Synechococcus sp. WH8102 complete genome; segment 6/7 BX5696
prokMSA_id:92726 Prochlorococcus marinus str. MIT 9313 complete genome NC_005
prokMSA_id:93043 Prochlorococcus marinus MIT9313 complete genome; segment 6/7
prokMSA_id:93066 Prochlorococcus marinus MIT9313 complete genome; segment 1/7
2.21.1.9.5158 OTU 1 seq
prokMSA_id:30150 Pavlova gyrans ; chloroplast chloroplast product
2.21.2 CHLOROPLASTS_AND_CYANELLES 312 seqs
2.21.2.1 PSEUDANABAENA_GROUP 44 seqs
2.21.2.1.5008 OTU 1 seq
prokMSA_id:62918 Synechococcus sp. PCC 7502 
2.21.2.1.5082 OTU 1 seq
prokMSA_id:58469 Limnothrix redekei strain: NIVA CYA 227/1
2.21.2.1.5121 OTU 2 seqs
prokMSA_id:3382 Pseudoanabaena biceps PCC 7367
prokMSA_id:28470 Pseudanabaena PCC7367 
2.21.2.1.5133 OTU 1 seq
prokMSA_id:16700 Pseudanabaena PCC6802 
2.21.2.1.5146 OTU 2 seqs
prokMSA_id:3386 Phormidium mucicola str. M-221
prokMSA_id:30337 Pseudanabaena PCC7403 
2.21.2.1.5145 OTU 21 seqs
prokMSA_id:3383 Synechococcus ATCC700245 str. P1 ATCC 700245. AF132774
prokMSA_id:3384 Synechococcus ATCC700246 str. P2 ATCC 700246. AF132775
prokMSA_id:3561 Octopus Spring microbial mat from Yellowstone NP clone B. M6
prokMSA_id:37551 cyanobacterium clone SM1F11 
prokMSA_id:42778 cyanobacterium clone SM2D09 
prokMSA_id:69841 Synechococcus sp. OH20 AF285241
prokMSA_id:70240 Synechococcus sp. OH31 AF285242
prokMSA_id:70422 Synechococcus sp. OH32 AF285243
prokMSA_id:70809 Synechococcus sp. OH4 AF285240
prokMSA_id:71080 Synechococcus sp. OH30 AF285256
prokMSA_id:71306 Synechococcus sp. OH28 AF285254
prokMSA_id:71581 Synechococcus sp. OH34 AF285258
prokMSA_id:71587 Synechococcus sp. OH2 
prokMSA_id:72458 Synechococcus sp. OH29 AF285255
prokMSA_id:73271 Synechococcus sp. OH33 AF285257
prokMSA_id:78933 clone EarCan098 
prokMSA_id:80319 cyanobacterium clone O1aA6 AY193064
prokMSA_id:81599 Synechococcus sp. 37 NACy05-A AF505960
prokMSA_id:82209 cyanobacterium NACy05-A AF505962
prokMSA_id:82458 cyanobacterium NACy05-A AF505961
prokMSA_id:87354 cyanobacterium clone SM2A08 AY293403
2.21.2.1.5223 OTU 16 seqs
prokMSA_id:3380 "Pseudanabaena galeata" str. CCC OL-75-PS. NONE
prokMSA_id:3385 "Pseudanabaena PCC7402" PCC 7402. AF132787
prokMSA_id:3387 "Oscillatoria limnetica" str. MR1
prokMSA_id:20111 Phormidium tenue AB042842
prokMSA_id:25499 Phormidium tenue strain:A AB042971
prokMSA_id:26809 Phormidium tenue 
prokMSA_id:32638 Phormidium tenue strain:C AB042972
prokMSA_id:33610 Pseudanabaena PCC7408 
prokMSA_id:42848 Phormidium tenue AB042838
prokMSA_id:47367 Phormidium tenue strain:S 
prokMSA_id:49081 Phormidium tenue 
prokMSA_id:49923 Phormidium sp. E18 AF263339
prokMSA_id:54033 Pseudanabaena PCC6903 
prokMSA_id:54183 Oscillatoria sp. UTCC393 
prokMSA_id:95607 Limnothrix redekei CCAP 1443/1 ITS1 tRNA-Ile tRNA-Ala and 23
prokMSA_id:96216 Limnothrix sp. MR1 ITS1 tRNA-Ile tRNA-Ala and 23S isolate MR
2.21.2.2 CYANELLE_GROUP 7 seqs
2.21.2.2.4987 OTU 1 seq
prokMSA_id:3393 Gloeochaete wittrockiana str. SAG B 46.84 blue green alga --
2.21.2.2.5097 OTU 4 seqs
prokMSA_id:3388 Cyanophora paradoxa colorless flagellate alga -- cyanelle. U
prokMSA_id:3389 Cyanophora paradoxa colorless flagellate alga -- cyanelle
prokMSA_id:3390 Cyanophora paradoxa colorless flagellate alga -- cyanelle. U
prokMSA_id:53530 Cyanophora paradoxa cyanelle complete genome NC_001675
2.21.2.2.5106 OTU 1 seq
prokMSA_id:3392 Glaucocystis nostochinearum str. SAG 45.88 blue green alga -
2.21.2.2.5239 OTU 1 seq
prokMSA_id:30917 clone PRD01a012B 
2.21.2.3 OTHER_CHLOROPLASTS 104 seqs
2.21.2.3.1 SKELETONEMA_SUBGROUP 27 seqs
2.21.2.3.1.4984 OTU 1 seq
prokMSA_id:30128 eukaryote OM164 
2.21.2.3.1.5037 OTU 1 seq
prokMSA_id:30270 stramenopile CLEAR-18 
2.21.2.3.1.5045 OTU 1 seq
prokMSA_id:30482 diatom clone HTAA8 ; chloroplast chloroplast product
2.21.2.3.1.5060 OTU 20 seqs
prokMSA_id:3401 marine snow associated clone agg46
prokMSA_id:3403 Skeletonema pseudocostatum str. CSIRO culture CS-76 centric
prokMSA_id:3439 Skeletonema costatum str. UBS-18 Univ. of British Columbia c
prokMSA_id:18056 diatom clone HTDD6 ; chloroplast chloroplast product
prokMSA_id:26067 diatom clone HT2F1 ; chloroplast chloroplast product AF41897
prokMSA_id:30625 diatom clone HT2A3 ; chloroplast chloroplast product AF41897
prokMSA_id:42337 diatom clone HTB2 ; chloroplast chloroplast product
prokMSA_id:44942 diatom clone HT2B7 ; chloroplast chloroplast product
prokMSA_id:48163 diatom clone HT2A8 ; chloroplast chloroplast product AF41897
prokMSA_id:48825 Odontella sinensis chloroplast complete genome NC_001713
prokMSA_id:63316 clone RCP2-13 
prokMSA_id:63815 plastid clone ML310M-8 AF454328
prokMSA_id:64737 Haslea wawrikae ; chloroplast chloroplast product
prokMSA_id:64739 Haslea pseudostrearia ; chloroplast chloroplast product AF51
prokMSA_id:64743 Haslea ostrearia ; chloroplast chloroplast product AF514852
prokMSA_id:64745 Haslea sp. ; chloroplast chloroplast product AF514851
prokMSA_id:64746 Pleurosigma intermedium ; chloroplast chloroplast product AF
prokMSA_id:69021 Odontella sinensis complete chloroplast genome Z67753
prokMSA_id:77079 diatom clone HC-8 ; chloroplast chloroplast product
prokMSA_id:95798 clone 53 AJ538357
2.21.2.3.1.5120 OTU 1 seq
prokMSA_id:3438 clone LD27
2.21.2.3.1.5221 OTU 1 seq
prokMSA_id:3400 clone OM20
2.21.2.3.1.5240 OTU 1 seq
prokMSA_id:3447 Olisthodiscus luteus stramenopile -- chloroplast
2.21.2.3.1.5241 OTU 1 seq
prokMSA_id:3448 Pylaiella littoralis brown alga -- chloroplast
2.21.2.3.2 EUGLENA_SUBGROUP 23 seqs
2.21.2.3.2.4967 OTU 1 seq
prokMSA_id:83959 eukaryote clone TLM14 
2.21.2.3.2.4973 OTU 1 seq
prokMSA_id:3454 Astasia longa str. CCAP 1204-17a colorless euglenophycean al
2.21.2.3.2.4971 OTU 1 seq
prokMSA_id:3450 Chlorarachnion reptans CCMP 238 amoeboflagellate -- chloropl
2.21.2.3.2.4977 OTU 1 seq
prokMSA_id:40682 Colacium vesiculosum ; chloroplast chloroplast product
2.21.2.3.2.4974 OTU 1 seq
prokMSA_id:3452 Prototheca zopfii str. SAG 263-1a green alga -- chloroplast
2.21.2.3.2.4979 OTU 1 seq
prokMSA_id:38279 Phacus orbicularis ; chloroplast chloroplast product
2.21.2.3.2.5019 OTU 2 seqs
prokMSA_id:3451 Chlorarachnion sp. CCMP 240 amoeboflagellate -- chloroplast
prokMSA_id:70779 Chlorarachnion CCMP240 chloroplast chloroplast complete U214
2.21.2.3.2.5033 OTU 1 seq
prokMSA_id:46777 eukaryote OM81 
2.21.2.3.2.5043 OTU 1 seq
prokMSA_id:40174 Strombomonas costata ; chloroplast chloroplast product
2.21.2.3.2.5053 OTU 1 seq
prokMSA_id:34641 Phacus pleuronectes ; chloroplast chloroplast product
2.21.2.3.2.5068 OTU 1 seq
prokMSA_id:49499 Crater Lake CL120-102 
2.21.2.3.2.5096 OTU 1 seq
prokMSA_id:3456 Euglena gracilis euglenophycean alga -- chloroplast
2.21.2.3.2.5102 OTU 1 seq
prokMSA_id:77406 Euglena geniculata SAG 1224-4F ; chloroplast chloroplast pro
2.21.2.3.2.5130 OTU 1 seq
prokMSA_id:49945 eukaryote clone SM2B11 ; plastid plastid product
2.21.2.3.2.5171 OTU 1 seq
prokMSA_id:26708 Trachelomonas volvocina ; chloroplast chloroplast product
2.21.2.3.2.5206 OTU 1 seq
prokMSA_id:63233 clone FW124 
2.21.2.3.2.5225 OTU 1 seq
prokMSA_id:33162 Euglena polymorpha ; chloroplast chloroplast product
2.21.2.3.2.5224 OTU 1 seq
prokMSA_id:16320 Euglena stellata ; chloroplast chloroplast product
2.21.2.3.2.5231 OTU 1 seq
prokMSA_id:44394 rhodophyte PRD01a010B 
2.21.2.3.2.5232 OTU 1 seq
prokMSA_id:24874 Euglena tristella ; chloroplast chloroplast product
2.21.2.3.2.5242 OTU 2 seqs
prokMSA_id:3449 Chlorarachnion sp. CCMP 242 amoeboflagellate -- chloroplast
prokMSA_id:72174 Chlorarachnion CCMP242 chloroplast chloroplast complete U214
2.21.2.3.3 OCHROSPHAERA_SUBGROUP 18 seqs
2.21.2.3.3.5039 OTU 1 seq
prokMSA_id:47593 eukaryote OM270 
2.21.2.3.3.5100 OTU 1 seq
prokMSA_id:17082 Isochrysidales sp. SIC.42345 
2.21.2.3.3.5147 OTU 16 seqs
prokMSA_id:3462 clone OM21
prokMSA_id:3464 str. 2-100 C10. Z77491
prokMSA_id:3465 Ochrosphaera sp. str. 181 haptophyte -- chloroplast
prokMSA_id:3466 Ochrosphaera neapolitana CCMP 593 haptophyte -- chloroplast
prokMSA_id:3467 Isochrysis sp. flagellate alga -- chloroplast
prokMSA_id:3468 Emiliania huxleyi str. Plymouth Marine Laborator PML 92D
prokMSA_id:3469 str. 1-140 C10. Z77353
prokMSA_id:22013 haptophyte OM125 
prokMSA_id:23395 Crater Lake CL120-71 
prokMSA_id:34744 clone 33-PA67B00 AF469400
prokMSA_id:35915 haptophyte OM153 
prokMSA_id:40411 Crater Lake CL120-48 AF316699
prokMSA_id:48463 Chrysochromulina polylepis ; chloroplast chloroplast product
prokMSA_id:48657 Crater Lake CL120-75 
prokMSA_id:72546 Ochrosphaera neapolitana plastid tRNAIle tRNAAla and 23S gen
prokMSA_id:83678 Morganella morganii strain:JCM1672 AB089243
2.21.2.3.4 PYRENOMONAS_SUBGROUP 29 seqs
2.21.2.3.4.4970 OTU 1 seq
prokMSA_id:69457 Chilomonas paramecium leucoplast 
2.21.2.3.4.4994 OTU 3 seqs
prokMSA_id:52865 Porphyra leucosticta ; plastid plastid product
prokMSA_id:53015 Porphyra purpurea chloroplast complete genome NC_000925
prokMSA_id:69121 Porphyra purpurea chloroplast complete genome U38804
2.21.2.3.4.5007 OTU 1 seq
prokMSA_id:85239 eukaryote clone TLM13/TLMdgge20 
2.21.2.3.4.5041 OTU 1 seq
prokMSA_id:27542 Flintiella sanguinaria ; plastid plastid product
2.21.2.3.4.5139 OTU 1 seq
prokMSA_id:29775 Compsopogon coeruleus ; plastid plastid product
2.21.2.3.4.5166 OTU 18 seqs
prokMSA_id:3470 Pyrenomonas salina cryptomonad -- chloroplast
prokMSA_id:3472 Cryptomonas phi str. F 2-flagellae cryptomonad -- chloroplas
prokMSA_id:25107 cryptomonad OM283 
prokMSA_id:51823 Guillardia theta chloroplast complete genome NC_000926
prokMSA_id:60252 Proteomonas sulcata plastid 
prokMSA_id:60253 Hemiselmis virescens plastid 
prokMSA_id:60255 Chroomonas placoidea plastid 
prokMSA_id:69145 Geminigera cryophila plastid 
prokMSA_id:69194 Dinophysis acuminata plastid AB073114
prokMSA_id:69410 Dinophysis norvegica plastid AB073116
prokMSA_id:69432 Guillardia theta complete plastid genome AF041468
prokMSA_id:69476 alga isolate WL11-15 ; chloroplast chloroplast product AF497
prokMSA_id:71043 Dinophysis fortii plastid AB073115
prokMSA_id:72132 algal chloroplast clone DGGE band CIBAC-9 AJ239996
prokMSA_id:73189 alga isolate WL11-17 ; chloroplast chloroplast product AF497
prokMSA_id:80010 Dinophysis acuta strain acutNP09 ; plastid plastid product A
prokMSA_id:80089 Dinophysis norvegica strain norvCC04 ; plastid plastid produ
prokMSA_id:80457 Dinophysis acuminata strain acumGC08 ; plastid plastid produ
2.21.2.3.4.5170 OTU 3 seqs
prokMSA_id:16609 Stylonema alsidii ; plastid plastid product
prokMSA_id:47228 Chroodactylon ramosum ; plastid plastid product
prokMSA_id:47632 Rhodosorus marinus ; plastid plastid product
2.21.2.3.4.5235 OTU 1 seq
prokMSA_id:56317 Cryptomonas ovata plastid 
2.21.2.3.5 PORPHYRA_SUBGROUP 5 seqs
2.21.2.3.5.5109 OTU 1 seq
prokMSA_id:3476 Glaucosphaera vacuolata str. SAG B 13.82 blue green alga --
2.21.2.3.5.5108 OTU 1 seq
prokMSA_id:3474 Chondrus crispus red alga -- chloroplast
2.21.2.3.5.5107 OTU 1 seq
prokMSA_id:3473 Antithamnion sp. red alga -- chloroplast
2.21.2.3.5.5135 OTU 1 seq
prokMSA_id:3475 Palmaria palmata edible? red alga -- chloroplast
2.21.2.3.5.5154 OTU 1 seq
prokMSA_id:19992 Bangia fuscopurpurea ; plastid plastid product
2.21.2.3.6 CYANIDIUM_SUBGROUP 2 seqs
2.21.2.3.6.5112 OTU 1 seq
prokMSA_id:3479 Cyanidium caldarium str. 14-1-1 red alga -- chloroplast
2.21.2.3.6.5176 OTU 1 seq
prokMSA_id:47684 Rhodophyte NZ4 ; plastid plastid product
2.21.2.4 GREEN_ALGAE_CHLOROPLASTS 91 seqs
2.21.2.4.4968 OTU 1 seq
prokMSA_id:3487 Chlamydomonas pallidostigmatica green alga -- chloroplast
2.21.2.4.4975 OTU 1 seq
prokMSA_id:3490 Nanochlorum eucaryotum green coccoidal alga -- chloroplast
2.21.2.4.4980 OTU 1 seq
prokMSA_id:3492 clone HstpL33
2.21.2.4.4982 OTU 1 seq
prokMSA_id:3493 Chlamydomonas parkeae str. NIES-440 green alga -- chloroplas
2.21.2.4.4986 OTU 2 seqs
prokMSA_id:3484 Chlamydomonas reinhardtii green alga -- chloroplast
prokMSA_id:79762 TPA: Chlamydomonas reinhardtii chloroplast complete genome
2.21.2.4.4983 OTU 1 seq
prokMSA_id:3494 Chlorella mirabilis str. 748-I green alga -- chloroplast
2.21.2.4.4990 OTU 2 seqs
prokMSA_id:3497 Chlorella saccharophila subsp. saccharophila str. 211-1d gre
prokMSA_id:71886 Chlorella saccharophila strain 211-1d chloroplast D11349
2.21.2.4.5006 OTU 58 seqs
prokMSA_id:3481 Chlorella kessleri str. 211-11g green alga -- chloroplast
prokMSA_id:3483 Chlorella sorokiniana str. 211-8k green alga -- chloroplast
prokMSA_id:3488 Chlorella kessleri str. 211-11h green alga -- chloroplast
prokMSA_id:3489 Chlorella vulgaris green alga -- chloroplast
prokMSA_id:3499 Chlorella vulgaris str. 211-11b green alga -- chloroplast
prokMSA_id:16639 Chlorella sp. CS12 region isolate 21 AJ387754
prokMSA_id:17252 moss plastid clone moss33 ; chloroplast chloroplast product 
prokMSA_id:17254 Chlorella vulgaris ; chloroplast chloroplast product AF35025
prokMSA_id:18215 soil crust cyanobacterium clone moss32 AF428503
prokMSA_id:18695 Plastid transformation vector pGS31A ; aminoglycoside 3'-ade
prokMSA_id:20187 Putative agent of rhinosporidiosis AJ409116
prokMSA_id:22442 moss plastid clone moss35 ; chloroplast chloroplast product 
prokMSA_id:23026 Phaseolus vulgaris clone 8360 AJ007448
prokMSA_id:26398 soil C051 AF128638
prokMSA_id:26787 Chlorella vulgaris CS12 region strain IAM C-208 AJ387750
prokMSA_id:26834 moss plastid clone moss22 ; chloroplast chloroplast product 
prokMSA_id:32970 Chlorella pyrenoidosa CS12 region strain IAM C-210 AJ387756
prokMSA_id:34404 Chlorella vulgaris chloroplast strain CCAP 211/19 AJ242750
prokMSA_id:36473 Chlorella sp. CS12 region isolate I AJ387755
prokMSA_id:36543 Magnolia x soulangeana ; chloroplast chloroplast product AF2
prokMSA_id:36710 Chlorella vulgaris ; chloroplast chloroplast product AF35026
prokMSA_id:38024 Crater Lake CL120-109 
prokMSA_id:38828 Chlorella vulgaris C-27 chloroplast complete AB001684
prokMSA_id:39313 Chlorella vulgaris chloroplast strain NIES 227 AJ242754
prokMSA_id:39824 Koliella sempervirens ; chloroplast chloroplast product AF27
prokMSA_id:39850 Medicago sativa AF419246
prokMSA_id:40905 Chlorella emersonii chloroplast strain NIES 690 AJ242751
prokMSA_id:41108 Phaseolus vulgaris clone 8206 AJ007447
prokMSA_id:41814 Nitella flexilis ; chloroplast chloroplast product AF278748
prokMSA_id:43787 Koliella spiculiformis ; chloroplast chloroplast product AF2
prokMSA_id:45393 Chlorella sp. CS12 region isolate V AJ387757
prokMSA_id:45563 Alnus glutinosa chloroplast encoding chloroplast U46209
prokMSA_id:47517 Solanum tuberosum leukoplast clone RC-III-13 AJ252712
prokMSA_id:49481 Chlorella vulgaris chloroplast complete genome NC_001865
prokMSA_id:51755 A.glutinosa chloroplast X95278
prokMSA_id:52742 Chlorella sp. CS12 region isolate 216 AJ387753
prokMSA_id:52757 Chlorella vulgaris chloroplast strain IAM C-27 AJ242753
prokMSA_id:54861 moss plastid clone moss23 ; chloroplast chloroplast product 
prokMSA_id:56887 clone Sai4P3-16 AJ518707
prokMSA_id:61291 embryophyte plastid clone NOS7.166WL ; chloroplast chloropla
prokMSA_id:61292 embryophyte plastid clone SMW4.10WL ; chloroplast chloroplas
prokMSA_id:61293 embryophyte plastid clone NOW2.115WL ; chloroplast chloropla
prokMSA_id:64444 embryophyte clone BCM1-32B ; plastid plastid product
prokMSA_id:69239 eukaryote FL10D12 ; plastid plastid product AY145639
prokMSA_id:70155 Chlorella vulgaris strain 211-1e chloroplast D11347
prokMSA_id:70573 Calothrix parietina clone 144-1B + 159-4 AF334696
prokMSA_id:71605 Cuscuta subinclusa chloroplast tRNA-ValGAC and AJ278625
prokMSA_id:73853 Calothrix parietina clone 144-1A + 159-4 AF334695
prokMSA_id:83443 Raphidonema nivale strain IAM C-166 ; chloroplast chloroplas
prokMSA_id:83538 Zygnema sp. KA-2002 ; chloroplast chloroplast product AF4977
prokMSA_id:83946 Chaetosphaeridium globosum ; chloroplast chloroplast product
prokMSA_id:84762 Nitellopsis obtusa ; chloroplast chloroplast product AF49779
prokMSA_id:85205 Koliella planctonica ; chloroplast chloroplast product AF497
prokMSA_id:85873 Raphidonema nivale strain CCAP ; chloroplast chloroplast pro
prokMSA_id:86193 Chara strigosa ; chloroplast chloroplast product AF497791
prokMSA_id:89527 marine eukaryote isolate ODP1176A22X_6_B ; plastid plastid p
prokMSA_id:89881 Calothrix sp. KU004 AB097922
prokMSA_id:98871 clone DGGE band 34 AJ583813
2.21.2.4.5022 OTU 1 seq
prokMSA_id:63818 plastid clone ML310M-37 
2.21.2.4.5055 OTU 2 seqs
prokMSA_id:32850 Prototheca wickerhamii 5.0 kb plastid fragment of genecluste
prokMSA_id:48130 Prototheca wickerhamii chloroplast genome
2.21.2.4.5058 OTU 1 seq
prokMSA_id:17005 Crater Lake CL120-14 
2.21.2.4.5092 OTU 2 seqs
prokMSA_id:26799 Codium fragile chloroplast encoding chloroplast 
prokMSA_id:97540 Codium fragile ; chloroplast chloroplast product AY389515
2.21.2.4.5095 OTU 3 seqs
prokMSA_id:31996 Chlamydomonas dysosmos rrn16 ; chloroplast chloroplast produ
prokMSA_id:47887 Chlamydomonas humicola rrn16 ; chloroplast chloroplast produ
prokMSA_id:49287 Chlamydomonas applanata ; chloroplast chloroplast product
2.21.2.4.5098 OTU 1 seq
prokMSA_id:20563 Euglena tripteris ; chloroplast chloroplast product
2.21.2.4.5111 OTU 2 seqs
prokMSA_id:3500 Chlorella saccharophila subsp. ellipsoidea str. 3.80 green a
prokMSA_id:70500 Chlorella saccharophila strain 3.80 chloroplast D11348
2.21.2.4.5110 OTU 2 seqs
prokMSA_id:3485 Chlamydomonas eugametos str. UTEX 9 mt+ green alga --
prokMSA_id:3498 Chlamydomonas moewusii str. UTEX 97 mt+ green alga --
2.21.2.4.5119 OTU 1 seq
prokMSA_id:18107 Prototheca wickerhamii ; leucoplast leucoplast product
2.21.2.4.5124 OTU 1 seq
prokMSA_id:3486 Yamagishiella unicocca str. X-441 green alga -- chloroplast
2.21.2.4.5123 OTU 1 seq
prokMSA_id:31682 Lepocinclis fusiformis ; chloroplast chloroplast product
2.21.2.4.5137 OTU 2 seqs
prokMSA_id:42846 Polytoma oviforme rrn16 ; chloroplast chloroplast product AF
prokMSA_id:48283 Polytoma oviforme ; leucoplast leucoplast product
2.21.2.4.5140 OTU 1 seq
prokMSA_id:3495 Chlorella protothecoides str. 211-7a green alga --
2.21.2.4.5155 OTU 1 seq
prokMSA_id:3480 Gonium pectorale str. NIES-468 green alga -- chloroplast
2.21.2.4.5156 OTU 1 seq
prokMSA_id:3482 Chlorella ellipsoidea str. IAM-C87 green alga -- chloroplast
2.21.2.4.5160 OTU 1 seq
prokMSA_id:3491 Pyramimonas parkeae str. NIES 254 green alga -- chloroplast
2.21.2.4.5179 OTU 1 seq
prokMSA_id:38948 Phacus skujai ; chloroplast chloroplast product
2.21.2.5 CHAROPHYTA-EMBRYOPHYTA_CHLOROPLASTS 66 seqs
2.21.2.5.4966 OTU 1 seq
prokMSA_id:34845 Adiantum pedatum ; chloroplast chloroplast product
2.21.2.5.4976 OTU 1 seq
prokMSA_id:42014 Calypogeia muelleriana ; chloroplast chloroplast product
2.21.2.5.5000 OTU 1 seq
prokMSA_id:72055 Mitrastema yamamotoi chloroplast 
2.21.2.5.5018 OTU 2 seqs
prokMSA_id:3509 Juniperus virginiana gymnosperm -- chloroplast
prokMSA_id:19534 eukaryote clone SM1B08 ; plastid plastid product
2.21.2.5.5026 OTU 2 seqs
prokMSA_id:3530 Ephedra trifurca gymnosperm -- chloroplast
prokMSA_id:36243 Gnetum leyboldii ; chloroplast chloroplast product
2.21.2.5.5040 OTU 32 seqs
prokMSA_id:3506 Angiopteris evecta eusporangiate fern -- chloroplast
prokMSA_id:3511 Cibotium glaucum Hawaiian tree fern -- chloroplast
prokMSA_id:3512 Doodia maxima leptosporangiate fern -- chloroplast
prokMSA_id:3514 Nicotiana tabacum common tobacco; tobacco; American tobacco 
prokMSA_id:3516 Pinus thunbergiana Japanese black pine; green pine --
prokMSA_id:3517 Sphagnum palustre bryophyte -- chloroplast
prokMSA_id:3521 Alnus incana hazel alder -- chloroplast
prokMSA_id:3531 Marchantia polymorpha liverwort -- chloroplast
prokMSA_id:3532 Nicotiana plumbaginifolia str. wild curled-leaved tobacco;
prokMSA_id:3539 Brassica napus forage rape; kale -- chloroplast
prokMSA_id:3542 Nicotiana plumbaginifolia str. wild curled-leaved tobacco;
prokMSA_id:3546 Daucus carota carrot -- chloroplast
prokMSA_id:3552 Ricinis communis castor bean -- chloroplast
prokMSA_id:3554 Osmunda cinnamomea str. var. fokiensis cinnamon fern --
prokMSA_id:3559 Cuscuta reflexa dodder plant -- chloroplast
prokMSA_id:18362 Cuscuta campestris chloroplast 
prokMSA_id:21502 Cuscuta platyloba chloroplast 
prokMSA_id:32016 Megaceros aenigmaticus ; chloroplast chloroplast product
prokMSA_id:35330 Cuscuta europaea chloroplast 
prokMSA_id:40521 Polytrichum commune ; chloroplast chloroplast product
prokMSA_id:41462 Phaeoceros laevis ; chloroplast chloroplast product
prokMSA_id:48267 Carica papaya chloroplast chloroplast 
prokMSA_id:48948 Ginkgo biloba ; chloroplast chloroplast product
prokMSA_id:52573 Nymphaea tuberosa ; chloroplast chloroplast product
prokMSA_id:53526 Orobanche minor chloroplast trnVGAC trnIGAU pseudogene trnAU
prokMSA_id:62969 angiosperm clone T5-20 ; chloroplast chloroplast product
prokMSA_id:64370 Putative agent of rhinosporidiosis 
prokMSA_id:69031 Solanum nigrum chloroplast tRNA-Ala tRNA-Ile tRNA-Val rps12 
prokMSA_id:69292 Cuscuta odorata chloroplast tRNA-ValGAC and 
prokMSA_id:72159 Cuscuta gronovii chloroplast tRNA-ValGAC and 
prokMSA_id:74351 Cuscuta reflexa chloroplast tRNA-ValGAC and 
prokMSA_id:84627 Lycopersicon esculentum tRNA-Val complete ; complete ; and t
2.21.2.5.5062 OTU 2 seqs
prokMSA_id:83461 Coleochaete pulvinata ; chloroplast chloroplast product
prokMSA_id:86374 Coleochaete nitellarum ; chloroplast chloroplast product
2.21.2.5.5099 OTU 1 seq
prokMSA_id:3534 Selaginella apoda fern allies -- chloroplast
2.21.2.5.5101 OTU 1 seq
prokMSA_id:3536 Spirogyra maxima charophyte alga -- chloroplast
2.21.2.5.5105 OTU 1 seq
prokMSA_id:3538 Klebsormidium flaccidum charophyte alga -- chloroplast
2.21.2.5.5122 OTU 1 seq
prokMSA_id:3540 Chara sp. stonewort green alga -- chloroplast
2.21.2.5.5136 OTU 1 seq
prokMSA_id:35074 Cynomorium coccineum chloroplast 
2.21.2.5.5181 OTU 1 seq
prokMSA_id:29047 Cytinus ruber chloroplast chloroplast 
2.21.2.5.5183 OTU 2 seqs
prokMSA_id:3504 Pisum sativum str. cr. Progress No.9 pea; garden pea --
prokMSA_id:3529 Pisum sativum pea; garden pea -- chloroplast
2.21.2.5.5182 OTU 14 seqs
prokMSA_id:3501 Epifagus virginiana beechdrops -- chloroplast
prokMSA_id:3505 Oryza sativa str. cv. Nipponbare rice -- chloroplast
prokMSA_id:3518 Psilotum nudum fern allies -- chloroplast
prokMSA_id:3525 Tmesipteris oblanceolata fern allies -- chloroplast
prokMSA_id:3526 Lycopodium digitatum fern allies -- chloroplast
prokMSA_id:3527 Equisetum arvense fern allies -- chloroplast
prokMSA_id:3544 Conopholis americana flowering plant -- chloroplast
prokMSA_id:3545 Isoetes melanopoda fern allies -- chloroplast
prokMSA_id:3549 Ophioglossum engelmannii eusporangiate fern -- chloroplast
prokMSA_id:3550 Lygodium japonicum leptosporangiate fern -- chloroplast
prokMSA_id:18059 Plastid transformation vector pMSK49 plastid targeting regio
prokMSA_id:46607 Oryza sativa japonica cultivar-group plastid complete genome
prokMSA_id:52836 Triticum aestivum L. chloroplast 
prokMSA_id:74494 Huperzia lucidula ; chloroplast chloroplast product
2.21.2.5.5192 OTU 1 seq
prokMSA_id:39969 Cycas revoluta ; chloroplast chloroplast product
2.21.2.5.5203 OTU 1 seq
prokMSA_id:45967 Bdallophyton americanum chloroplast 
2.21.2.5.5227 OTU 1 seq
prokMSA_id:3508 Closterium ehrenbergii str. NIES-228 green alga -- chloropla
2.21.4 GLOEOBACTER_GROUP 6 seqs
2.21.4.4997 OTU 5 seqs
prokMSA_id:3563 Gloeobacter violaceus PCC 7421
prokMSA_id:3564 Gloeobacter violaceus PCC 7421
prokMSA_id:3565 Gloeobacter PCC8105 PCC 8105
prokMSA_id:94836 Gloeobacter violaceus PCC 7421 complete genome section 6/16 
prokMSA_id:97840 Gloeobacter violaceus complete genome NC_005125
2.21.4.5143 OTU 1 seq
prokMSA_id:19077 soil PBS-II-1 
2.21.5 ENVIRONMENTAL_CLONE_TM7_GROUP 11 seqs
2.21.5.4981 OTU 1 seq
prokMSA_id:3566 clone TM7
2.21.5.4988 OTU 1 seq
prokMSA_id:3568 clone M13
2.21.5.5014 OTU 1 seq
prokMSA_id:16748 TM7LH15 
2.21.5.5061 OTU 3 seqs
prokMSA_id:17120 NoosaAW13 
prokMSA_id:46000 NoosaAW67 
prokMSA_id:49063 NoosaAW56 
2.21.5.5177 OTU 4 seqs
prokMSA_id:21216 gold mine D25 
prokMSA_id:40620 gold mine D20 
prokMSA_id:44180 gold mine D51 
prokMSA_id:85251 clone D140 
2.21.5.5228 OTU 1 seq
prokMSA_id:37526 GC1 
2.25 FIBROBACTER_AND_ACIDOBACTERIUM 209 seqs
2.25.1 FIBROBACTER_SUBDIVISION 76 seqs
2.25.1.1 FIBROBACTER_GROUP 4 seqs
2.25.1.1.6384 OTU 1 seq
prokMSA_id:3581 Fibrobacter sp
2.25.1.1.6381 OTU 1 seq
prokMSA_id:3577 clone 12-5
2.25.1.1.6389 OTU 1 seq
prokMSA_id:3591 Fibrobacter sp
2.25.1.1.6422 OTU 1 seq
prokMSA_id:63459 Fibrobacter succinogenes strain HM2
2.25.1.2 ENVIRONMENTAL_CLONE_OCS307_GROUP 72 seqs
2.25.1.2.6327 OTU 1 seq
prokMSA_id:38224 clone Car89fb 
2.25.1.2.6328 OTU 4 seqs
prokMSA_id:3641 clone BOL-162
prokMSA_id:3643 clone BOL-116
prokMSA_id:3644 clone BOL-27
prokMSA_id:3646 clone BOL-06
2.25.1.2.6331 OTU 2 seqs
prokMSA_id:3620 clone CA1-01
prokMSA_id:3627 clone BMS1-37
2.25.1.2.6336 OTU 1 seq
prokMSA_id:22653 delta clone Car176f 
2.25.1.2.6344 OTU 1 seq
prokMSA_id:79412 clone ZA3648c 
2.25.1.2.6346 OTU 1 seq
prokMSA_id:22758 MERTZ_21CM_187 
2.25.1.2.6349 OTU 3 seqs
prokMSA_id:42960 marine ARCT1-7 
prokMSA_id:64945 Fibrobacter group CS4K-103 
prokMSA_id:64952 Fibrobacter group CS4K-102 
2.25.1.2.6352 OTU 1 seq
prokMSA_id:35861 delta Arctic96B-7 
2.25.1.2.6369 OTU 1 seq
prokMSA_id:3628 clone BMS1-28
2.25.1.2.6373 OTU 1 seq
prokMSA_id:3633 clone LL-19
2.25.1.2.6370 OTU 1 seq
prokMSA_id:3629 clone BMS1-07
2.25.1.2.6372 OTU 1 seq
prokMSA_id:3630 clone WCHB1-01
2.25.1.2.6376 OTU 1 seq
prokMSA_id:3640 clone CA1-03
2.25.1.2.6379 OTU 1 seq
prokMSA_id:3647 clone BOL-05
2.25.1.2.6377 OTU 1 seq
prokMSA_id:3642 clone BOL-126
2.25.1.2.6383 OTU 1 seq
prokMSA_id:3653 clone pB1-121
2.25.1.2.6385 OTU 1 seq
prokMSA_id:3655 clone NH16-16
2.25.1.2.6392 OTU 2 seqs
prokMSA_id:3602 clone CA1-183
prokMSA_id:3605 clone CA1-02
2.25.1.2.6393 OTU 1 seq
prokMSA_id:3594 clone WCHB1-15
2.25.1.2.6397 OTU 4 seqs
prokMSA_id:3601 clone LL-02
prokMSA_id:3603 clone CA1-06
prokMSA_id:3607 clone BOL-173. AF172899
prokMSA_id:3612 clone BMS1-64. AF172880
2.25.1.2.6395 OTU 3 seqs
prokMSA_id:3631 clone LL-22
prokMSA_id:3632 clone LL-20
prokMSA_id:3634 clone LL-01
2.25.1.2.6399 OTU 3 seqs
prokMSA_id:3637 clone CA1-114
prokMSA_id:3645 clone BOL-15
prokMSA_id:3648 clone BMS1-76. AF172881
2.25.1.2.6406 OTU 5 seqs
prokMSA_id:3635 clone CA1-191
prokMSA_id:3636 clone CA1-115
prokMSA_id:3638 clone CA1-22
prokMSA_id:3639 clone CA1-17
prokMSA_id:18930 Toluene-degrading methanogenic consortium Eub 3 
2.25.1.2.6408 OTU 2 seqs
prokMSA_id:64895 Fibrobacter group pT-426 
prokMSA_id:79575 clone ZA3312c 
2.25.1.2.6411 OTU 1 seq
prokMSA_id:48719 clone 33-PA26B99 
2.25.1.2.6430 OTU 2 seqs
prokMSA_id:74962 clone BLIB-95 
prokMSA_id:75343 clone ALIB-11 
2.25.1.2.6433 OTU 1 seq
prokMSA_id:23348 delta Arctic95A-3 
2.25.1.2.6436 OTU 1 seq
prokMSA_id:3608 clone BOL-134
2.25.1.2.6437 OTU 1 seq
prokMSA_id:3609 clone BOL-22
2.25.1.2.6442 OTU 1 seq
prokMSA_id:3619 clone BOL-130
2.25.1.2.6441 OTU 1 seq
prokMSA_id:3618 clone WCHB1-06
2.25.1.2.6447 OTU 1 seq
prokMSA_id:3621 clone BOL-195
2.25.1.2.6445 OTU 4 seqs
prokMSA_id:3622 clone BOL-177
prokMSA_id:3623 clone BOL-118
prokMSA_id:3624 clone BOL-26
prokMSA_id:3626 clone BOL-01
2.25.1.2.6454 OTU 6 seqs
prokMSA_id:3654 clone SAR 406
prokMSA_id:3656 clone OCS146. AF001653
prokMSA_id:3657 clone OCS 307
prokMSA_id:29916 NH16-12 
prokMSA_id:60631 Fibrobacter/Acidobacteria group clone AEGEAN_225 
prokMSA_id:68979 MB13C05 ; tRNA-Ile and tRNA-Ala genes complete ; and 23S 
2.25.1.2.6456 OTU 5 seqs
prokMSA_id:23031 MERTZ_21CM_158 
prokMSA_id:30415 MERTZ_2CM_63 
prokMSA_id:42369 MERTZ_2CM_351 
prokMSA_id:44566 MERTZ_2CM_321 
prokMSA_id:59831 clone OB3_30 
2.25.1.2.6457 OTU 5 seqs
prokMSA_id:3599 clone LL-27
prokMSA_id:3606 clone BOL-176
prokMSA_id:3611 clone BOL-04
prokMSA_id:3616 clone BMS1-11
prokMSA_id:3625 clone BOL-02
2.25.3 ACIDOBACTERIUM_SUBDIVISION 133 seqs
2.25.3.1 MOUNT_COOT-THA_ENVIRONMENTAL_CLONES_III 35 seqs
2.25.3.1.6329 OTU 1 seq
prokMSA_id:50491 Acidobacterium group YNPRH5A 
2.25.3.1.6337 OTU 1 seq
prokMSA_id:63244 clone FW14 
2.25.3.1.6339 OTU 1 seq
prokMSA_id:14398 DA040 
2.25.3.1.6353 OTU 1 seq
prokMSA_id:58081 Ellin371 
2.25.3.1.6354 OTU 1 seq
prokMSA_id:79283 sequences clone: IheB3-42
2.25.3.1.6357 OTU 1 seq
prokMSA_id:60816 Acidobacteria/Holophaga group clone Cart-N4 
2.25.3.1.6364 OTU 3 seqs
prokMSA_id:63235 clone FW3 
prokMSA_id:69911 Ellin342 
prokMSA_id:78832 Holophaga sp. clone JG30-KF-C5
2.25.3.1.6360 OTU 1 seq
prokMSA_id:63238 clone FW112 
2.25.3.1.6367 OTU 3 seqs
prokMSA_id:62412 Acidobacterium group clone FTL227 AF529104
prokMSA_id:63237 clone FW120 
prokMSA_id:76339 Holophaga sp. clone JG37-AG-74
2.25.3.1.6375 OTU 1 seq
prokMSA_id:16602 WD205 clone WD205
2.25.3.1.6380 OTU 1 seq
prokMSA_id:40302 #0319-7B4 
2.25.3.1.6386 OTU 2 seqs
prokMSA_id:26745 WD254 clone WD254
prokMSA_id:31570 WD292 clone WD292
2.25.3.1.6388 OTU 1 seq
prokMSA_id:3663 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 
2.25.3.1.6387 OTU 1 seq
prokMSA_id:3660 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 
2.25.3.1.6394 OTU 1 seq
prokMSA_id:3668 unnamed organism
2.25.3.1.6390 OTU 1 seq
prokMSA_id:3667 clone C002
2.25.3.1.6396 OTU 1 seq
prokMSA_id:3669 unnamed organism
2.25.3.1.6401 OTU 1 seq
prokMSA_id:75757 Holophaga sp. clone JG37-AG-109
2.25.3.1.6400 OTU 1 seq
prokMSA_id:32551 Agricultural soil clone SC-I-77 
2.25.3.1.6415 OTU 1 seq
prokMSA_id:76572 Holophaga sp. clone JG37-AG-39
2.25.3.1.6420 OTU 1 seq
prokMSA_id:60572 clone B90 
2.25.3.1.6426 OTU 1 seq
prokMSA_id:60585 clone B11 
2.25.3.1.6425 OTU 1 seq
prokMSA_id:60581 clone B27 
2.25.3.1.6429 OTU 1 seq
prokMSA_id:47645 SHA-18 
2.25.3.1.6435 OTU 1 seq
prokMSA_id:3671 clone RB38
2.25.3.1.6434 OTU 1 seq
prokMSA_id:3670 clone RB29
2.25.3.1.6439 OTU 1 seq
prokMSA_id:3679 clone CLEAR-4
2.25.3.1.6438 OTU 1 seq
prokMSA_id:3677 clone SJA-149
2.25.3.1.6444 OTU 1 seq
prokMSA_id:3684 clone OPB3
2.25.3.1.6450 OTU 1 seq
prokMSA_id:60599 clone G10 
2.25.3.2 ENVIRONMENTAL_RB_CLONES_GROUP 21 seqs
2.25.3.2.6338 OTU 8 seqs
prokMSA_id:3693 unnamed organism
prokMSA_id:3694 unnamed organism
prokMSA_id:65811 soil clone S088 
prokMSA_id:65831 soil clone S0119 
prokMSA_id:65838 soil clone S0109 
prokMSA_id:65845 soil clone S061 
prokMSA_id:65847 soil clone S055 
prokMSA_id:65855 soil clone S032 
2.25.3.2.6348 OTU 1 seq
prokMSA_id:3692 clone RB41
2.25.3.2.6363 OTU 5 seqs
prokMSA_id:3686 clone 32-11
prokMSA_id:21414 species clone 32-19
prokMSA_id:24596 species clone RB112
prokMSA_id:86371 Acidobacteria clone BAC-220H AY214900
prokMSA_id:88510 soil clone DS-111 AY289367
2.25.3.2.6431 OTU 1 seq
prokMSA_id:74836 clone LRS13
2.25.3.2.6451 OTU 1 seq
prokMSA_id:3690 unnamed organism
2.25.3.2.6448 OTU 1 seq
prokMSA_id:3687 unnamed organism
2.25.3.2.6449 OTU 1 seq
prokMSA_id:3689 unnamed organism
2.25.3.2.6452 OTU 1 seq
prokMSA_id:3695 unnamed organism
2.25.3.2.6453 OTU 1 seq
prokMSA_id:3696 clone GFP1
2.25.3.2.6455 OTU 1 seq
prokMSA_id:3697 clone RB30
2.25.3.4 ENVIRONMENTAL_CLONE_MC22_GROUP 2 seqs
2.25.3.4.6371 OTU 1 seq
prokMSA_id:3700 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 
2.25.3.4.6407 OTU 1 seq
prokMSA_id:84133 soil clone Tc120-F03 
2.25.3.6 ACBT.CAPSULATUM_GROUP 75 seqs
2.25.3.6.6335 OTU 1 seq
prokMSA_id:63241 clone FW45 
2.25.3.6.6343 OTU 1 seq
prokMSA_id:75632 Holophaga sp. clone JG37-AG-116
2.25.3.6.6345 OTU 1 seq
prokMSA_id:76368 Acidobacterium group clone JG36-TzT-77
2.25.3.6.6350 OTU 1 seq
prokMSA_id:58105 Ellin337 
2.25.3.6.6359 OTU 2 seqs
prokMSA_id:61838 Acidobacterium group clone CLi114 
prokMSA_id:76027 Holophaga sp. clone JG37-AG-61
2.25.3.6.6355 OTU 1 seq
prokMSA_id:77048 Holophaga sp. clone Sh765B-AG-82
2.25.3.6.6356 OTU 1 seq
prokMSA_id:69818 clone FW47 
2.25.3.6.6362 OTU 7 seqs
prokMSA_id:3732 clone DA052
prokMSA_id:31615 WD244 clone WD244
prokMSA_id:75894 Holophaga sp. clone JG37-AG-5 AJ519364
prokMSA_id:76166 Holophaga sp. clone JG37-AG-47
prokMSA_id:93614 Acidobacteria clone JG36-GS-126 AJ582044
prokMSA_id:93694 Acidobacteria clone JG36-GS-132 AJ582045
prokMSA_id:93966 Acidobacteria clone JG36-GS-146 AJ582043
2.25.3.6.6368 OTU 41 seqs
prokMSA_id:3708 clone 611
prokMSA_id:3709 clone 614
prokMSA_id:3724 clone Ep_T1.153. Z73364
prokMSA_id:3727 Mount Coot-tha region Brisbane Australia 5-10cm depth soil X
prokMSA_id:3734 clone Ep_T1.154. Z73365
prokMSA_id:14397 DA038 
prokMSA_id:16327 Acidobacterium UA2 
prokMSA_id:24040 WD226 clone WD226 AJ292577
prokMSA_id:25003 WD247 clone WD247
prokMSA_id:28064 WD257 clone WD257
prokMSA_id:31221 Acidobacterium UA3 
prokMSA_id:37457 Acidobacterium UA1 
prokMSA_id:41797 Acidobacterium group YNPRH72A 
prokMSA_id:46677 Acidobacterium group YNPRH46A 
prokMSA_id:47557 WD276 clone WD276
prokMSA_id:51223 WD213 clone WD213
prokMSA_id:56082 clone RCP1-32 
prokMSA_id:58117 Ellin327 
prokMSA_id:58126 Ellin323 
prokMSA_id:58136 Ellin310 
prokMSA_id:61405 Acidobacterium group clone SMS9.16WL 
prokMSA_id:63242 clone FW43 AF523983
prokMSA_id:63246 clone FW116 AF523977
prokMSA_id:63248 clone FW111 
prokMSA_id:63319 clone RCP2-4 AF523897
prokMSA_id:63320 clone RCP2-97 
prokMSA_id:63321 clone RCP1-101 
prokMSA_id:63322 clone RCP2-3 
prokMSA_id:63323 clone RCP1-43 
prokMSA_id:66600 Acidobacterium sp. WJ7 
prokMSA_id:69821 Ellin326 AF498708
prokMSA_id:73492 Ellin311 
prokMSA_id:75133 Holophaga sp. clone JG37-AG-9
prokMSA_id:76453 Holophaga sp. clone JG37-AG-67 AJ519378
prokMSA_id:76740 Acidobacterium group clone JG36-TzT-54 AJ534633
prokMSA_id:76986 Holophaga sp. clone JG37-AG-42
prokMSA_id:77412 K-5b2 
prokMSA_id:79035 Holophaga sp. clone JG30-KF-A4 AJ536862
prokMSA_id:84886 clone D118 
prokMSA_id:88321 delta clone ML23_ANME2 AY245460
prokMSA_id:93256 Acidobacteria clone JG36-GS-69 AJ582046
2.25.3.6.6366 OTU 5 seqs
prokMSA_id:3730 clone TM2
prokMSA_id:42606 WD243 clone WD243
prokMSA_id:45591 WD228 clone WD228
prokMSA_id:73733 Ellin351 
prokMSA_id:77776 Acidobacteriaceae clone:Rs-M39
2.25.3.6.6378 OTU 5 seqs
prokMSA_id:3704 Acidobacterium capsulatum str. 161. D26171
prokMSA_id:3746 str. TM13
prokMSA_id:39070 WD277 clone WD277
prokMSA_id:51399 Rainforest soil clone HRS-55 
prokMSA_id:73903 Acidobacterium capsulatum Acidophilic chemoorganotrophic 
2.25.3.6.6405 OTU 1 seq
prokMSA_id:74896 Acidobacterium group clone JG36-TzT-31
2.25.3.6.6410 OTU 1 seq
prokMSA_id:63318 clone RCP2-102 
2.25.3.6.6412 OTU 1 seq
prokMSA_id:3735 clone TRB82
2.25.3.6.6414 OTU 1 seq
prokMSA_id:61819 Acidobacterium group clone CLs73 
2.25.3.6.6423 OTU 1 seq
prokMSA_id:56406 clone FW92 
2.25.3.6.6421 OTU 1 seq
prokMSA_id:38048 WD217 clone WD217
2.25.3.6.6424 OTU 1 seq
prokMSA_id:77390 K-5b10 
2.25.3.6.6432 OTU 2 seqs
prokMSA_id:26225 WD281 clone WD281
prokMSA_id:72400 Ellin345 
2.27 SPIROCHETES_AND_RELATIVES 668 seqs
2.27.1 BRACHYSPIRA_GROUP 119 seqs
2.27.1.6548 OTU 119 seqs
prokMSA_id:3750 Brachyspira hyodysenteriae str. PWS/A
prokMSA_id:3751 Brachyspira innocens str. AN 520:93 group II
prokMSA_id:3752 Brachyspira hyodysenteriae str. R1
prokMSA_id:3753 Brachyspira innocens str. AN 1023:90 group III
prokMSA_id:3754 Brachyspira hyodysenteriae str. 2818.5
prokMSA_id:3755 Brachyspira innocens str. AN 3706:90 group III
prokMSA_id:3756 Brachyspira hyodysenteriae str. AN 174:92
prokMSA_id:3757 Brachyspira innocens str. HRM-7. U23031
prokMSA_id:3758 Brachyspira innocens str. C 320 group III
prokMSA_id:3760 Brachyspira innocens str. C 109 group III
prokMSA_id:3761 Brachyspira innocens str. P 43 group IV
prokMSA_id:3762 Brachyspira hyodysenteriae str. B204 ATCC 31212
prokMSA_id:3763 Brachyspira innocens str. C 162 group IV
prokMSA_id:3768 Brachyspira hyodysenteriae str. B78
prokMSA_id:3769 Brachyspira innocens str. P43/6/78. U23032
prokMSA_id:3770 Brachyspira innocens str. B256 group III
prokMSA_id:3771 Brachyspira innocens str. 155-20
prokMSA_id:3772 Brachyspira innocens str. C 555 group III
prokMSA_id:3774 Brachyspira innocens str. WES-B. U23034
prokMSA_id:3776 Brachyspira innocens str. C 173 group III
prokMSA_id:3777 Brachyspira aalborgi NCTC 11492
prokMSA_id:3779 Brachyspira innocens str. AN 26:93 group II
prokMSA_id:3781 Brachyspira innocens str. C 378 group III
prokMSA_id:3782 Brachyspira innocens str. AN 1004:90 group III
prokMSA_id:3783 Brachyspira innocens str. AN 983:90 group II
prokMSA_id:3784 Brachyspira innocens str. AN 167:90 group II
prokMSA_id:3785 Brachyspira hyodysenteriae str. NIV-1
prokMSA_id:3786 Brachyspira innocens str. AN 916:90 group IV
prokMSA_id:3788 Brachyspira hyodysenteriae str. B204
prokMSA_id:3789 Brachyspira hyodysenteriae str. A4974
prokMSA_id:3791 Brachyspira innocens str. C 265 group III
prokMSA_id:3792 Brachyspira innocens str. C 301 group III
prokMSA_id:16876 adhucomuHca09 
prokMSA_id:18811 adhucomuHca25 
prokMSA_id:25199 adhucomuHcc35 
prokMSA_id:25279 Brachyspira aalborgi strain W1 
prokMSA_id:25827 adhucomuHca20 
prokMSA_id:26030 adhucomuTvb40 
prokMSA_id:27259 Brachyspira sp. Cb104:95 
prokMSA_id:28079 Brachyspira sp. A3077 
prokMSA_id:30878 adhucomuHca76 
prokMSA_id:32489 adhucomuHcc39 
prokMSA_id:32828 Brachyspira sp. AN883:98 
prokMSA_id:37834 adhucomuHcc07 AF228812
prokMSA_id:39956 adhucomuTvb21 
prokMSA_id:42611 adhucomuTva35 
prokMSA_id:43373 adhucomuTvb03 
prokMSA_id:47721 adhucomuTva17 
prokMSA_id:47728 adhucomuHca41 
prokMSA_id:47881 adhucomuHcc33 
prokMSA_id:49210 adhucomuTvb72 
prokMSA_id:49836 Brachyspira sp. AN2608:97 
prokMSA_id:72200 Brachyspira aalborgi AL 
prokMSA_id:72651 Brachyspira aalborgi JLL 
prokMSA_id:75479 Brachyspira pilosicoli AY155458
prokMSA_id:77935 Brachyspira ibaraki strain:HIS24/11/99
prokMSA_id:82516 Brachyspira pilosicoli strain OmanN26 
prokMSA_id:82667 Brachyspira innocens isolate:D2A/8/31
prokMSA_id:82681 Brachyspira innocens isolate:D9D/6/15
prokMSA_id:82925 Brachyspira innocens isolate:D4A/11/9
prokMSA_id:83009 Brachyspira innocens isolate:D3A/11/9
prokMSA_id:83195 Brachyspira innocens isolate:D1A/8/31
prokMSA_id:83206 Brachyspira innocens isolate:D5A/11/9
prokMSA_id:83297 Brachyspira innocens isolate:D10A/6/15 AB093309
prokMSA_id:83588 Brachyspira innocens isolate:D4D/6/15
prokMSA_id:83600 Brachyspira innocens isolate:D12A/6/15 AB093310
prokMSA_id:83734 Brachyspira innocens isolate:D1A/10/5
prokMSA_id:83843 Brachyspira innocens isolate:D7D/6/15
prokMSA_id:83872 Brachyspira innocens AB094042
prokMSA_id:84014 Brachyspira innocens isolate:D4B/10/25
prokMSA_id:84017 Brachyspira innocens isolate:D3D/6/15
prokMSA_id:84263 Brachyspira innocens isolate:D2A/6/15
prokMSA_id:84303 Brachyspira innocens isolate:D1A/10/25
prokMSA_id:84658 Brachyspira innocens isolate:D2A/10/5
prokMSA_id:84667 Brachyspira innocens isolate:D1A/11/9
prokMSA_id:84740 Brachyspira innocens isolate:D3B/10/25
prokMSA_id:84797 Brachyspira innocens isolate:D3A/8/31
prokMSA_id:84927 Brachyspira innocens isolate:D7A/10/25 AB093321
prokMSA_id:85039 Brachyspira innocens isolate:D5D/6/15
prokMSA_id:85067 Brachyspira innocens isolate:D6B/10/25
prokMSA_id:85297 Brachyspira innocens isolate:D6B/6/15
prokMSA_id:85671 Brachyspira innocens isolate:D2A/11/9
prokMSA_id:86423 Brachyspira innocens isolate:D1D/6/15
prokMSA_id:86499 Brachyspira innocens AB094043
prokMSA_id:86505 Brachyspira innocens isolate:D9D/10/25
prokMSA_id:86660 Brachyspira innocens isolate:D2A/10/25
prokMSA_id:88315 Brachyspira canis strain AN 2657:01 AY312848
prokMSA_id:88867 Brachyspira murdochii strain 56-150 AY312492
prokMSA_id:89273 Brachyspira canis strain AN 4752:01 AY312849
prokMSA_id:90173 Brachyspira canis strain AN 5288:01 AY312846
prokMSA_id:90613 Brachyspira canis strain AN 5358:01 AY312847
prokMSA_id:92045 Brachyspira sp. AN 3599/02 AY352283
prokMSA_id:92098 Brachyspira sp. AN 3902/02 AY352286
prokMSA_id:92107 Brachyspira hyodysenteriae AN 3907/02 AY352287
prokMSA_id:92196 Brachyspira hyodysenteriae AN 383:2/00 AY352291
prokMSA_id:92217 Brachyspira sp. AN 4578/01 AY349933
prokMSA_id:92253 Brachyspira canis strain AN 5304/01 AY349938
prokMSA_id:92258 Brachyspira sp. AN 1788/01 AY349935
prokMSA_id:92268 Brachyspira sp. AN 3624/02 AY352284
prokMSA_id:92273 Brachyspira canis strain A2 AY349936
prokMSA_id:92278 Brachyspira sp. AN 3930/02 AY352288
prokMSA_id:92292 Brachyspira sp. AN 3949/02 AY352290
prokMSA_id:92338 Brachyspira sp. W2f AY349948
prokMSA_id:92341 Brachyspira canis strain AN 5467/01 AY349939
prokMSA_id:92347 Brachyspira aalborgi W3b AY349949
prokMSA_id:92356 Brachyspira sp. AN 1418/01 AY352282
prokMSA_id:92367 Brachyspira pilosicoli Dog 17 AY349944
prokMSA_id:92440 Brachyspira pilosicoli 24072-93a AY349943
prokMSA_id:92446 Brachyspira canis strain H98-13 AY349942
prokMSA_id:92499 Brachyspira canis strain AN 4771/01 AY349937
prokMSA_id:92560 Brachyspira aalborgi W2b AY349947
prokMSA_id:92698 Brachyspira pilosicoli CN 140 AY349945
prokMSA_id:92728 Brachyspira sp. AN 3931/02 AY352289
prokMSA_id:92748 Brachyspira pilosicoli H98-5 AY349946
prokMSA_id:92885 Brachyspira hyodysenteriae AN 1409/01 AY352281
prokMSA_id:92933 Brachyspira canis strain CN 6 AY349940
prokMSA_id:92968 Brachyspira sp. AN 3886/02 AY352285
prokMSA_id:93018 Brachyspira canis strain CN 129 AY349941
prokMSA_id:93115 Brachyspira sp. CN 2 AY349934
2.27.2 BRV.ANDERSONII_GROUP 1 seq
2.27.2.6598 OTU 1 seq
prokMSA_id:3793 Brevinema andersonii str. FS47
2.27.3 SPIROCHAETA-TREPONEMA-BORRELIA_SUBDIVISION 505 seqs
2.27.3.1 SPI.HALOPHILA_GROUP 31 seqs
2.27.3.1.6459 OTU 1 seq
prokMSA_id:79117 Spirochaeta sp. BHI80-158 strain BHI80-158
2.27.3.1.6464 OTU 1 seq
prokMSA_id:38610 Spirochaeta sp. clone za29
2.27.3.1.6467 OTU 1 seq
prokMSA_id:3801 Spirochaeta sp. str. TM3
2.27.3.1.6465 OTU 1 seq
prokMSA_id:52112 Spirochaeta sp. Grapes 
2.27.3.1.6469 OTU 1 seq
prokMSA_id:3807 Spirochaeta asiatica str. Z-7591 DSM 8901
2.27.3.1.6468 OTU 1 seq
prokMSA_id:3802 Spirochaeta africana str. Z-7692 DSM 8902
2.27.3.1.6478 OTU 2 seqs
prokMSA_id:3804 Spirochaeta alkalica str. Z-7491 DSM 8900
prokMSA_id:38562 Spirochaeta sp. ASpG1 
2.27.3.1.6482 OTU 2 seqs
prokMSA_id:17526 Spirochaeta sp. MERTZ_21CM_149 
prokMSA_id:59817 clone OB3_185 
2.27.3.1.6503 OTU 3 seqs
prokMSA_id:36866 DCE33 AF349763
prokMSA_id:66166 clone IIIB-9
prokMSA_id:74347 DCE25 
2.27.3.1.6513 OTU 2 seqs
prokMSA_id:63216 clone FW20 
prokMSA_id:63217 clone FW67 
2.27.3.1.6516 OTU 1 seq
prokMSA_id:36699 spirochete MT10 
2.27.3.1.6514 OTU 2 seqs
prokMSA_id:77624 Treponema sp. clone:Rs-H09
prokMSA_id:77774 Spirochaeta sp. clone:Rs-B68
2.27.3.1.6534 OTU 1 seq
prokMSA_id:3803 clone MUG26
2.27.3.1.6536 OTU 1 seq
prokMSA_id:3805 clone CLEAR-22
2.27.3.1.6537 OTU 1 seq
prokMSA_id:3806 Spirochaeta Olavius loisae endosymbiont 4
2.27.3.1.6538 OTU 1 seq
prokMSA_id:3808 clone ACE-19
2.27.3.1.6547 OTU 1 seq
prokMSA_id:62701 Spirochaetaceae clone ML623J-23 
2.27.3.1.6558 OTU 1 seq
prokMSA_id:37803 Spironema culicis 
2.27.3.1.6557 OTU 1 seq
prokMSA_id:56171 spirochete clone ML320J-13 
2.27.3.1.6582 OTU 1 seq
prokMSA_id:25074 spirochete MERTZ_21CM_139 
2.27.3.1.6602 OTU 1 seq
prokMSA_id:3799 Spirochaeta halophila str. RS1 ATCC 29478
2.27.3.1.6600 OTU 1 seq
prokMSA_id:3797 Spirochaeta litoralis str. R1 ATCC 27000
2.27.3.1.6607 OTU 1 seq
prokMSA_id:3812 Spirochaeta thermophila DSM 6192
2.27.3.1.6609 OTU 1 seq
prokMSA_id:3821 clone BURTON-26
2.27.3.1.6610 OTU 1 seq
prokMSA_id:38414 spirochete MT57 
2.27.3.2 TREPONEMA_GROUP 266 seqs
2.27.3.2.1 TRP.BRYANTII_SUBGROUP 9 seqs
2.27.3.2.1.6483 OTU 2 seqs
prokMSA_id:17711 fiber-attaching rumen SY2 
prokMSA_id:39089 fiber-attaching rumen clone:SY22
2.27.3.2.1.6561 OTU 4 seqs
prokMSA_id:3829 Treponema bryantii str. RUS-1 ATCC 33254
prokMSA_id:3830 clone RC1
prokMSA_id:3831 clone RF13
prokMSA_id:3833 clone RFN95
2.27.3.2.1.6593 OTU 1 seq
prokMSA_id:71422 mpn-isolate group 17 
2.27.3.2.1.6591 OTU 1 seq
prokMSA_id:42877 Treponema pectinovorum OMZ831 
2.27.3.2.1.6612 OTU 1 seq
prokMSA_id:3826 Treponema saccharophilum str. PB ATCC 43261
2.27.3.2.2 TRP.SOCRANSKII_SUBGROUP 67 seqs
2.27.3.2.2.6484 OTU 4 seqs
prokMSA_id:3852 Treponema amylovorum
prokMSA_id:3855 Treponema V:20:D62 str. V:20:D62
prokMSA_id:3856 Treponema V:A:U7A str. V:A:U7A
prokMSA_id:3859 Treponema 5:C:AT040 str. 5:C:AT040. AF182834
2.27.3.2.2.6492 OTU 6 seqs
prokMSA_id:3862 Treponema Treponema clone RFS12
prokMSA_id:26242 Treponema clone RsDiSp12 
prokMSA_id:36987 Treponema clone HsPySp16 
prokMSA_id:37517 Treponema clone HsPySp15 
prokMSA_id:47422 Treponema clone RsDiSp1 
prokMSA_id:78106 Treponema sp. clone:Rs-E01
2.27.3.2.2.6526 OTU 1 seq
prokMSA_id:83155 Treponema sp. 7CPL208 
2.27.3.2.2.6531 OTU 1 seq
prokMSA_id:3854 Treponema V:19:D36 str. V:19:D36
2.27.3.2.2.6546 OTU 5 seqs
prokMSA_id:3853 Treponema Smibert-2 str. D96NR-3. AF033304
prokMSA_id:17854 Treponema parvum OMZ843 
prokMSA_id:30574 Treponema parvum OMZ842 
prokMSA_id:36464 Treponema parvum OMZ833 
prokMSA_id:49225 Treponema parvum OMZ832 
2.27.3.2.2.6560 OTU 2 seqs
prokMSA_id:3886 Spirochaeta sp
prokMSA_id:3887 Spirochaeta sp
2.27.3.2.2.6567 OTU 1 seq
prokMSA_id:78163 Treponema sp. clone:Rs-A48
2.27.3.2.2.6570 OTU 8 seqs
prokMSA_id:3861 Treponema maltophilum str. BR
prokMSA_id:3880 Treponema IV:17B:C21 str. IV:17B:C21
prokMSA_id:3882 Treponema IV:17C:GF6 str. IV:17C:GF6
prokMSA_id:3883 Treponema IV:17D:D31 str. IV:17D:D31
prokMSA_id:3884 Treponema IV:18:C9 str. IV:18:C9
prokMSA_id:3888 Treponema IV:17E:D36 str. IV:17E:D36
prokMSA_id:38741 Treponema lecithinolyticum isolate PFB4G AJ131282
prokMSA_id:63015 Treponema lecithinolytikum patient PFB4G X87139
2.27.3.2.2.6576 OTU 1 seq
prokMSA_id:78359 Treponema sp. clone:Rs-J14
2.27.3.2.2.6578 OTU 12 seqs
prokMSA_id:3876 Treponema Treponema clone RFS105
prokMSA_id:3877 Treponema Treponema clone RFS2
prokMSA_id:3878 Treponema Treponema clone RFS66
prokMSA_id:3879 Treponema Treponema clone RFS9
prokMSA_id:3969 Treponema Treponema clone RFS29. AF068339
prokMSA_id:22641 Treponema clone HsDiSp314 
prokMSA_id:29435 Treponema clone HsPySp1 
prokMSA_id:30690 Treponema clone RsDiSp3 
prokMSA_id:43411 Treponema clone RsDiSp9 
prokMSA_id:46814 Treponema clone HsPySp20 
prokMSA_id:77852 Treponema sp. clone:Rs-G65
prokMSA_id:78226 Treponema sp. clone:Rs-P12
2.27.3.2.2.6581 OTU 1 seq
prokMSA_id:42928 equine intestinal sp. ML20 clone ML20
2.27.3.2.2.6590 OTU 2 seqs
prokMSA_id:3860 Treponema 5:22:BH022 str. 5:22:BH022
prokMSA_id:29328 Treponema sp. oral clone BZ013 AF385536
2.27.3.2.2.6604 OTU 18 seqs
prokMSA_id:3838 Treponema socranskii subsp. socranskii str. D56BRIII6 ATCC 3
prokMSA_id:3839 Treponema socranskii subsp. socranskii str. 122C
prokMSA_id:3840 Treponema socranskii subsp. socranskii str. 1166
prokMSA_id:3841 Treponema socranskii subsp. socranskii str. 128B
prokMSA_id:3842 Treponema socranskii subsp. socranskii str. 1267
prokMSA_id:3843 Treponema socranskii subsp. buccale str. 351
prokMSA_id:3844 Treponema socranskii subsp. buccale str. B418
prokMSA_id:3845 Treponema socranskii subsp. buccale str. T10
prokMSA_id:3846 Treponema Smibert-5 str. D120CR-1
prokMSA_id:3847 Treponema socranskii subsp. '04' str. D11B-2
prokMSA_id:3848 Treponema VI:G:G47 str. VI:G:G47
prokMSA_id:3849 Treponema VI:F:C44 str. VI:F:C44
prokMSA_id:3850 Treponema socranskii subsp. paredis ATCC 35535
prokMSA_id:3851 Treponema socranskii subsp. buccale ATCC 35534
prokMSA_id:24210 Treponema sp. 6:H:D15A-4 
prokMSA_id:94913 Treponema socranskii subsp. '04' strain D40DR-2 AY369246
prokMSA_id:95105 Treponema socranskii subsp. buccale strain OMZ 884 AY369255
prokMSA_id:95113 Treponema socranskii subsp. paredis strain OMZ 882 AY369254
2.27.3.2.2.6614 OTU 1 seq
prokMSA_id:3889 Treponema brennaborense
2.27.3.2.2.6615 OTU 3 seqs
prokMSA_id:3980 Spirochaeta sp
prokMSA_id:4007 Spirochaeta sp
prokMSA_id:77899 Treponema sp. clone:Rs-Q63
2.27.3.2.2.6619 OTU 1 seq
prokMSA_id:3892 str. sp40-12
2.27.3.2.3 TRP.PALLIDUM_SUBGROUP 34 seqs
2.27.3.2.3.6475 OTU 2 seqs
prokMSA_id:3964 Treponema pallidum str. Nichols
prokMSA_id:40086 Treponema pallidum subsp. pertenue 
2.27.3.2.3.6474 OTU 1 seq
prokMSA_id:3906 Treponema III:13:D94 str. III:13:D94
2.27.3.2.3.6479 OTU 1 seq
prokMSA_id:3927 Treponema sp
2.27.3.2.3.6502 OTU 8 seqs
prokMSA_id:3898 Treponema denticola ATCC 35405
prokMSA_id:3899 Treponema denticola ATCC 35404
prokMSA_id:3911 Treponema II:11:C3 str. II:11:C3
prokMSA_id:3912 Treponema II:11:C57 str. II:11:C57
prokMSA_id:3915 Treponema denticola str. W ATCC 33520
prokMSA_id:64388 Treponema denticola 
prokMSA_id:85243 Treponema putidum strain ATCC 700334
prokMSA_id:86665 Treponema sp. oral clone P2PB_53 P3 
2.27.3.2.3.6505 OTU 9 seqs
prokMSA_id:3907 Treponema II:10:D12 str. II:10:D12
prokMSA_id:3908 Treponema II:C:T1 str. II:C:T1
prokMSA_id:3909 Treponema II:D:G93 str. II:D:G93
prokMSA_id:3910 Treponema II:11:U61 str. II:E:U61
prokMSA_id:3913 Treponema II:H:D11 str. II:H:D11
prokMSA_id:3914 Treponema II:I:C53 str. II:I:C53
prokMSA_id:3916 unnamed organism
prokMSA_id:3919 str. 9-3143
prokMSA_id:36733 Treponema sp. G179 complete 
2.27.3.2.3.6522 OTU 1 seq
prokMSA_id:73875 Treponema refringens 
2.27.3.2.3.6528 OTU 1 seq
prokMSA_id:46681 AA14 
2.27.3.2.3.6540 OTU 7 seqs
prokMSA_id:3905 Treponema III:A:D24 str. III:A:D24
prokMSA_id:3917 Treponema III:B:U8A str. III:B:U8A
prokMSA_id:3921 Treponema III:F:AT004 str. III:F:AT004
prokMSA_id:3922 Treponema 3:E:AT013 str. 3:E:AT013
prokMSA_id:3923 Treponema 3:D:BQ032 str. 3:D:BQ032
prokMSA_id:3957 Treponema 3:G:BB003 str. 3:G:BB003
prokMSA_id:59569 Treponema sp. oral clone EX137 
2.27.3.2.3.6580 OTU 1 seq
prokMSA_id:3918 Treponema III:C:BA213 str. III:C:BA213
2.27.3.2.3.6608 OTU 1 seq
prokMSA_id:47380 Treponema calligyrum 
2.27.3.2.3.6611 OTU 1 seq
prokMSA_id:3949 str. 2-1498
2.27.3.2.3.6618 OTU 1 seq
prokMSA_id:3963 Treponema sp
2.27.3.2.4 SPI.STENOSTREPTA_SUBGROUP 14 seqs
2.27.3.2.4.6458 OTU 1 seq
prokMSA_id:73922 spirochete clone: NkS34
2.27.3.2.4.6466 OTU 1 seq
prokMSA_id:81100 clone ZZ12C6 
2.27.3.2.4.6472 OTU 1 seq
prokMSA_id:59907 spirochete clone ccslm2126 
2.27.3.2.4.6494 OTU 1 seq
prokMSA_id:78058 Treponema sp. clone:Rs-C47
2.27.3.2.4.6527 OTU 1 seq
prokMSA_id:3966 clone WCHB1-40
2.27.3.2.4.6530 OTU 1 seq
prokMSA_id:3984 Treponema Treponema clone RFS6
2.27.3.2.4.6562 OTU 1 seq
prokMSA_id:63291 clone RCP1-96 
2.27.3.2.4.6574 OTU 1 seq
prokMSA_id:4003 Treponema Treponema clone RFS81
2.27.3.2.4.6572 OTU 1 seq
prokMSA_id:51498 Spirochaeta sp. clone nc5
2.27.3.2.4.6577 OTU 1 seq
prokMSA_id:4008 clone R5-B26
2.27.3.2.4.6596 OTU 2 seqs
prokMSA_id:4004 Treponema Treponema clone RFS84
prokMSA_id:42498 Spirochaeta sp. clone rs443
2.27.3.2.4.6621 OTU 1 seq
prokMSA_id:3968 clone WCHB1-30
2.27.3.2.4.6620 OTU 1 seq
prokMSA_id:3967 clone WCHB1-91
2.27.3.2.5 SPI.SPMAST_SUBGROUP 9 seqs
2.27.3.2.5.6507 OTU 4 seqs
prokMSA_id:69247 spirochete clone: NkS4
prokMSA_id:69670 spirochete clone: NkS-Ste2
prokMSA_id:72109 spirochete clone: NkS-Dev14 AB085159
prokMSA_id:73183 spirochete clone: NkS-Oxy70
2.27.3.2.5.6552 OTU 1 seq
prokMSA_id:77955 Treponema sp. clone:Rs-E91
2.27.3.2.5.6583 OTU 2 seqs
prokMSA_id:78017 Treponema sp. clone:Rs-Q13
prokMSA_id:78252 Treponema sp. clone:Rs-J42
2.27.3.2.5.6585 OTU 1 seq
prokMSA_id:4027 Treponema Treponema clone RFS60
2.27.3.2.5.6597 OTU 1 seq
prokMSA_id:21434 Treponema sp. clone:BCf1-01
2.27.3.2.6 STR.MPSP16_SUBGROUP 131 seqs
2.27.3.2.6.6461 OTU 1 seq
prokMSA_id:78244 Treponema sp. clone:Rs-J54
2.27.3.2.6.6460 OTU 1 seq
prokMSA_id:77997 Treponema sp. clone:Rs-B69
2.27.3.2.6.6463 OTU 1 seq
prokMSA_id:78179 Treponema sp. clone:Rs-C91
2.27.3.2.6.6471 OTU 1 seq
prokMSA_id:4098 Treponema Treponema clone RFS52
2.27.3.2.6.6477 OTU 1 seq
prokMSA_id:83413 Spirochete symbiont of Mixotricha paradoxa clone mp3
2.27.3.2.6.6473 OTU 1 seq
prokMSA_id:77621 Treponema sp. clone:Rs-B29
2.27.3.2.6.6476 OTU 1 seq
prokMSA_id:74426 spirochete clone: NkS50
2.27.3.2.6.6481 OTU 1 seq
prokMSA_id:78281 Treponema sp. clone:Rs-C15
2.27.3.2.6.6485 OTU 1 seq
prokMSA_id:4125 Treponema Treponema clone RFS64
2.27.3.2.6.6486 OTU 1 seq
prokMSA_id:4126 Treponema Treponema clone RFS99
2.27.3.2.6.6489 OTU 1 seq
prokMSA_id:83652 Spirochete symbiont of Mixotricha paradoxa clone mp1
2.27.3.2.6.6488 OTU 57 seqs
prokMSA_id:4009 Treponema ZAS-1 str. ZAS-1
prokMSA_id:4084 Treponema Treponema clone RFS25
prokMSA_id:4085 Treponema Treponema clone RFS21
prokMSA_id:4086 Treponema Treponema clone RFS3
prokMSA_id:4087 Treponema Treponema clone RFS41
prokMSA_id:4088 Treponema Treponema clone RFS8
prokMSA_id:4099 Treponema Treponema clone RFS7
prokMSA_id:4100 Treponema Treponema clone RFS75
prokMSA_id:4101 Treponema Treponema clone RFS82
prokMSA_id:4114 Treponema ZAS-2 str. ZAS-2
prokMSA_id:4116 Treponema Treponema clone RFS15. AF068336
prokMSA_id:24078 Treponema clone HsPySp4 
prokMSA_id:29732 Treponema clone RsDiSp8 
prokMSA_id:32372 Treponema clone HsDiSp320 
prokMSA_id:44741 Spirochaeta sp. clone rs402
prokMSA_id:44787 Spirochaeta sp. clone nc40
prokMSA_id:46398 clone:BCf6-24 AB062834
prokMSA_id:69074 spirochete clone: NkS1
prokMSA_id:69104 spirochete clone: NkS21
prokMSA_id:69148 spirochete clone: NkS56
prokMSA_id:69426 spirochete clone: NkS15
prokMSA_id:69563 spirochete clone: NkS-Oxy8
prokMSA_id:69619 spirochete clone: NkS-Oxy26
prokMSA_id:70117 spirochete clone: NkS-Oxy1
prokMSA_id:70817 spirochete clone: NkS85
prokMSA_id:70909 spirochete clone: NkS-Oxy3
prokMSA_id:71442 spirochete clone: NkS94
prokMSA_id:71676 spirochete clone: NkS53
prokMSA_id:71891 spirochete clone: NkS37
prokMSA_id:72131 spirochete clone: NkS49
prokMSA_id:73490 spirochete clone: NkS97
prokMSA_id:73924 spirochete clone: NkS8
prokMSA_id:74331 spirochete clone: NkS5
prokMSA_id:74527 spirochete clone: NkS95
prokMSA_id:77582 Treponema sp. clone:Rs-D40
prokMSA_id:77591 Treponema sp. clone:Rs-Q78
prokMSA_id:77600 Treponema sp. clone:Rs-P25
prokMSA_id:77606 Treponema sp. clone:Rs-C35
prokMSA_id:77632 Treponema sp. clone:Rs-C32
prokMSA_id:77647 Treponema sp. clone:Rs-P59
prokMSA_id:77677 Treponema sp. clone:Rs-E18
prokMSA_id:77686 Treponema sp. clone:Rs-D47
prokMSA_id:77700 Treponema sp. clone:Rs-A16 AB088892
prokMSA_id:77759 Treponema sp. clone:Rs-H62
prokMSA_id:77775 Treponema sp. clone:Rs-E15
prokMSA_id:77778 Treponema sp. clone:Rs-A77
prokMSA_id:77811 Treponema sp. clone:Rs-D01
prokMSA_id:77877 Treponema sp. clone:Rs-A09 AB088905
prokMSA_id:77905 Treponema sp. clone:Rs-E03
prokMSA_id:77953 Treponema sp. clone:Rs-B10
prokMSA_id:77980 Treponema sp. clone:Rs-E37
prokMSA_id:78076 Treponema sp. clone:Rs-D73
prokMSA_id:78092 Treponema sp. clone:Rs-D13
prokMSA_id:78117 Treponema sp. clone:Rs-F60
prokMSA_id:78272 Treponema sp. clone:Rs-D96
prokMSA_id:78296 Treponema sp. clone:Rs-J93
prokMSA_id:78381 Treponema sp. clone:Rs-D53
2.27.3.2.6.6491 OTU 5 seqs
prokMSA_id:17555 clone:BCf9-08
prokMSA_id:25068 clone:BCf5-01
prokMSA_id:36150 clone:BCf11-05
prokMSA_id:38586 clone:BCf8-03
prokMSA_id:78047 Treponema sp. clone:Rs-D57
2.27.3.2.6.6487 OTU 1 seq
prokMSA_id:78105 Treponema sp. clone:Rs-D52
2.27.3.2.6.6490 OTU 1 seq
prokMSA_id:48891 clone:BCf4-14
2.27.3.2.6.6495 OTU 1 seq
prokMSA_id:4062 Spirochaeta sp
2.27.3.2.6.6498 OTU 1 seq
prokMSA_id:4065 Spirochaeta sp
2.27.3.2.6.6501 OTU 1 seq
prokMSA_id:4068 Spirochaeta sp
2.27.3.2.6.6497 OTU 1 seq
prokMSA_id:4063 Spirochaeta sp
2.27.3.2.6.6500 OTU 1 seq
prokMSA_id:4067 Spirochaeta sp
2.27.3.2.6.6506 OTU 3 seqs
prokMSA_id:78119 Treponema sp. clone:Rs-G28
prokMSA_id:78155 Treponema sp. clone:Rs-H84
prokMSA_id:78206 Treponema sp. clone:Rs-J58
2.27.3.2.6.6504 OTU 1 seq
prokMSA_id:4069 Spirochaeta sp
2.27.3.2.6.6510 OTU 1 seq
prokMSA_id:4071 Spirochaeta sp
2.27.3.2.6.6511 OTU 4 seqs
prokMSA_id:40147 Spirochaeta sp. kf401 
prokMSA_id:69324 spirochete clone: NkS93
prokMSA_id:69390 spirochete clone: NkS-Ste1
prokMSA_id:72963 spirochete clone: NkS-Dev1
2.27.3.2.6.6508 OTU 2 seqs
prokMSA_id:4043 str. mpsp2
prokMSA_id:4115 str. sp40-7
2.27.3.2.6.6520 OTU 2 seqs
prokMSA_id:4076 str. sp5-9. X89042
prokMSA_id:4082 str. mpsp16
2.27.3.2.6.6519 OTU 1 seq
prokMSA_id:4080 str. sp40-8
2.27.3.2.6.6517 OTU 1 seq
prokMSA_id:23660 Treponema sp. ZAS-9 
2.27.3.2.6.6521 OTU 1 seq
prokMSA_id:4083 str. sp40-11
2.27.3.2.6.6523 OTU 1 seq
prokMSA_id:78395 Treponema sp. clone:Rs-J64
2.27.3.2.6.6529 OTU 1 seq
prokMSA_id:16871 clone:BCf10-21
2.27.3.2.6.6535 OTU 1 seq
prokMSA_id:77792 Treponema sp. clone:Rs-B94
2.27.3.2.6.6532 OTU 1 seq
prokMSA_id:56589 spirochete clone: NkS39
2.27.3.2.6.6541 OTU 1 seq
prokMSA_id:4046 clone Cd48
2.27.3.2.6.6543 OTU 1 seq
prokMSA_id:4047 Treponema Treponema clone RFS11
2.27.3.2.6.6544 OTU 1 seq
prokMSA_id:4127 Treponema Treponema clone RFS18
2.27.3.2.6.6550 OTU 1 seq
prokMSA_id:22449 Spirochaeta sp. clone kf428
2.27.3.2.6.6554 OTU 1 seq
prokMSA_id:78084 Treponema sp. clone:Rs-D43
2.27.3.2.6.6555 OTU 1 seq
prokMSA_id:4053 Treponema Treponema clone RFS94
2.27.3.2.6.6564 OTU 1 seq
prokMSA_id:25824 Treponema clone HsDiSp319 
2.27.3.2.6.6569 OTU 1 seq
prokMSA_id:27500 Spirochaeta sp. clone kf612
2.27.3.2.6.6568 OTU 1 seq
prokMSA_id:40667 Spirochaeta sp. clone rs438
2.27.3.2.6.6565 OTU 2 seqs
prokMSA_id:69238 spirochete clone: NkS-Oxy25
prokMSA_id:69779 spirochete clone: NkS9
2.27.3.2.6.6571 OTU 1 seq
prokMSA_id:86557 Spirochete symbiont of Mixotricha paradoxa clone mp4
2.27.3.2.6.6573 OTU 1 seq
prokMSA_id:69510 spirochete clone: NkS7
2.27.3.2.6.6579 OTU 1 seq
prokMSA_id:69543 spirochete clone: NkS83
2.27.3.2.6.6575 OTU 2 seqs
prokMSA_id:59914 spirochete clone ccslm226 
prokMSA_id:91429 clone SR_FBR_L44 AY340839
2.27.3.2.6.6589 OTU 3 seqs
prokMSA_id:4056 clone SJA-102
prokMSA_id:4131 clone SJA-69
prokMSA_id:4132 clone SJA-182
2.27.3.2.6.6587 OTU 1 seq
prokMSA_id:4097 Treponema Treponema clone RFS102
2.27.3.2.6.6586 OTU 1 seq
prokMSA_id:35642 clone:BCf9-14
2.27.3.2.6.6588 OTU 1 seq
prokMSA_id:4038 str. sp5-18
2.27.3.2.6.6592 OTU 1 seq
prokMSA_id:4044 clone Cd3
2.27.3.2.6.6594 OTU 1 seq
prokMSA_id:4118 Treponema Treponema clone CFS121
2.27.3.2.6.6595 OTU 1 seq
prokMSA_id:4049 Treponema Treponema clone CFS6
2.27.3.2.6.6599 OTU 1 seq
prokMSA_id:31994 clone:BCf6-15
2.27.3.2.6.6601 OTU 3 seqs
prokMSA_id:4117 Treponema Treponema clone CFS124
prokMSA_id:35727 clone:BCf3-09
prokMSA_id:47692 clone:BCf5-23
2.27.3.2.6.6603 OTU 1 seq
prokMSA_id:27323 clone:BCf7-24
2.27.3.2.6.6623 OTU 1 seq
prokMSA_id:78014 Treponema sp. clone:Rs-D46
2.27.3.2.7 SPI.SPNL1_SUBGROUP 2 seqs
2.27.3.2.7.6499 OTU 1 seq
prokMSA_id:4139 Spirochaeta sp
2.27.3.2.7.6509 OTU 1 seq
prokMSA_id:4143 Spirochaeta sp
2.27.3.3 SPI.AURANTIA 3 seqs
2.27.3.3.6549 OTU 1 seq
prokMSA_id:63294 clone RCP1-64 
2.27.3.3.6622 OTU 2 seqs
prokMSA_id:4145 Spirochaeta aurantia subsp. aurantia str. J1 ATCC 25082
prokMSA_id:89319 Spirochaeta aurantia isolate WQM4 AJ565432
2.27.3.4 CRS.SP_STR_CP1 1 seq
2.27.3.4.6515 OTU 1 seq
prokMSA_id:4146 Cristispira sp. str. CP1
2.27.3.5 BORRELIA_GROUP 204 seqs
2.27.3.5.6493 OTU 3 seqs
prokMSA_id:4182 Borrelia anserina str. ES-1
prokMSA_id:4296 Borrelia burgdorferi str. CA8. AJ224134
prokMSA_id:4297 Borrelia burgdorferi str. CA29. AJ224135
2.27.3.5.6566 OTU 201 seqs
prokMSA_id:4147 Borrelia burgdorferi str. R-IP90. M89937
prokMSA_id:4148 Borrelia coriaceae str. Co53 ATCC 43381 . M60970
prokMSA_id:4149 Borrelia hermsii str. HS1T ATCC 35209
prokMSA_id:4151 Borrelia burgdorferi str. 20004. M64310
prokMSA_id:4153 Borrelia burgdorferi str. CA2-87
prokMSA_id:4154 Borrelia coriaceae str. Co53 ATCC 43381
prokMSA_id:4155 Borrelia persica str. UESV/340
prokMSA_id:4157 Borrelia burgdorferi str. 272
prokMSA_id:4158 Borrelia afzelii str. DK5
prokMSA_id:4159 Borrelia garinii str. SL20
prokMSA_id:4160 Borrelia garinii str. DK29
prokMSA_id:4161 Borrelia garinii str. isolate Far01. AJ009749
prokMSA_id:4162 Borrelia garinii str. isolate Far02. AJ009750
prokMSA_id:4163 Borrelia garinii str. isolate Fis01
prokMSA_id:4164 Borrelia garinii str. isolate Far03. AJ009752
prokMSA_id:4165 Borrelia garinii str. isolate Far04. AJ009753
prokMSA_id:4166 Borrelia garinii str. A87S. AF010165
prokMSA_id:4168 Borrelia garinii str. 20047
prokMSA_id:4169 Borrelia tanukii str. OR2eL
prokMSA_id:4170 Borrelia tanukii str. Hk501
prokMSA_id:4171 Borrelia garinii str. ChY13p
prokMSA_id:4172 Borrelia lonestari str. Texas 20
prokMSA_id:4173 Borrelia afzelii str. DK4
prokMSA_id:4174 Borrelia garinii str. PBi
prokMSA_id:4177 Borrelia garinii str. DK27
prokMSA_id:4179 Borrelia burgdorferi str. Illinois 1. M89936
prokMSA_id:4180 Borrelia burgdorferi str. DK7
prokMSA_id:4183 Borrelia burgdorferi str. B31 ATCC 35210
prokMSA_id:4185 Borrelia burgdorferi str. 934U
prokMSA_id:4187 Borrelia burgdorferi
prokMSA_id:4188 Borrelia burgdorferi
prokMSA_id:4189 Borrelia burgdorferi
prokMSA_id:4190 Borrelia burgdorferi
prokMSA_id:4191 Borrelia valaisiana str. AR-2. U78153
prokMSA_id:4192 Borrelia valaisiana str. M19. U78154
prokMSA_id:4193 Borrelia valaisiana str. M49. U78155
prokMSA_id:4194 Borrelia valaisiana str. M53. U78156
prokMSA_id:4195 Borrelia valaisiana str. VS116
prokMSA_id:4196 Borrelia valaisiana str. UK
prokMSA_id:4197 Borrelia valaisiana str. VS116. U78152
prokMSA_id:4198 Borrelia afzelii str. HT61
prokMSA_id:4199 Borrelia andersonii
prokMSA_id:4202 Borrelia andersonii
prokMSA_id:4203 Borrelia japonica
prokMSA_id:4204 Borrelia sp
prokMSA_id:4205 Borrelia duttoni
prokMSA_id:4208 Borrelia burgdorferi str. VS219
prokMSA_id:4209 Borrelia burgdorferi str. 9MT
prokMSA_id:4210 Borrelia sp. str. VS116
prokMSA_id:4211 Borrelia valaisiana str. CKA3a
prokMSA_id:4212 Borrelia valaisiana str. CKA1
prokMSA_id:4213 Borrelia sp. str. Am501
prokMSA_id:4214 Borrelia turdi str. Ya501
prokMSA_id:4215 Borrelia turdi str. Ac502
prokMSA_id:4216 Borrelia A14S str. A14S
prokMSA_id:4217 Borrelia burgdorferi str. 5MT
prokMSA_id:4218 Borrelia valaisiana str. CKA2a
prokMSA_id:4219 Borrelia valaisiana str. CKA4a
prokMSA_id:4220 Borrelia 10MT str. 10MT
prokMSA_id:4221 Borrelia sp. str. FCB-1
prokMSA_id:4222 Borrelia recurrentis str. A4. AF107356
prokMSA_id:4223 Borrelia recurrentis str. A5. AF107357
prokMSA_id:4224 Borrelia recurrentis str. A8. AF107358
prokMSA_id:4225 Borrelia recurrentis str. A10. AF107359
prokMSA_id:4226 Borrelia recurrentis str. A17. AF107360
prokMSA_id:4227 Borrelia recurrentis str. A11. AF107361
prokMSA_id:4228 Borrelia recurrentis str. A16. AF107362
prokMSA_id:4233 Borrelia recurrentis str. A1. AF107367
prokMSA_id:4235 Borrelia turicatae str. M2007
prokMSA_id:4237 Borrelia burgdorferi str. 1352. M64309
prokMSA_id:4238 Borrelia japonica
prokMSA_id:4239 Borrelia burgdorferi str. B31 ATCC 35210
prokMSA_id:4240 Borrelia miyamotoi str. HT31 JCM 9579
prokMSA_id:4241 Borrelia hermsii str. HS1T ATCC 35209
prokMSA_id:4243 Borrelia crocidurae str. UESV/626BAN
prokMSA_id:4244 Borrelia crocidurae str. UESV/917BAR
prokMSA_id:4249 Borrelia crocidurae str. UESV/523SIS
prokMSA_id:4250 Borrelia crocidurae str. UESV/1096TEN
prokMSA_id:4252 Borrelia duttonii str. UR/BD94MIT
prokMSA_id:4254 Borrelia hispanica str. UESV/246
prokMSA_id:4255 Borrelia recurrentis str. A1
prokMSA_id:4256 Borrelia sp
prokMSA_id:4257 Borrelia burgdorferi str. Sh-2-82
prokMSA_id:4258 Borrelia burgdorferi str. 935T
prokMSA_id:4259 Borrelia tanukii str. NPNE1
prokMSA_id:4263 Borrelia burgdorferi str. 17Y
prokMSA_id:4265 Borrelia burgdorferi str. 297
prokMSA_id:4266 Borrelia burgdorferi str. R-IP3. M84815
prokMSA_id:4267 Borrelia afzelii str. DK3
prokMSA_id:4268 Borrelia afzelii str. VS461. U78151
prokMSA_id:4269 Borrelia japonica str. IKA2
prokMSA_id:4270 Borrelia burgdorferi str. G1. M64311
prokMSA_id:4271 Borrelia afzelii
prokMSA_id:4272 Borrelia japonica str. HO14
prokMSA_id:4274 Borrelia hermsii. M85075
prokMSA_id:4275 Borrelia burgdorferi str. G2. M60967
prokMSA_id:4277 Borrelia burgdorferi str. MUL
prokMSA_id:4279 Borrelia burgdorferi str. Kipp
prokMSA_id:4280 Borrelia burgdorferi str. DUNKIRK
prokMSA_id:4282 Borrelia afzelii str. DK1
prokMSA_id:4283 Borrelia burgdorferi str. DN127
prokMSA_id:4285 Borrelia burgdorferi
prokMSA_id:4286 str. Z41293
prokMSA_id:4287 str. Z41493
prokMSA_id:4288 Borrelia sinica str. CMN3
prokMSA_id:4290 Borrelia sinica str. CMN2
prokMSA_id:4293 Borrelia burgdorferi str. CA28
prokMSA_id:4295 Borrelia burgdorferi str. CA13
prokMSA_id:4298 Borrelia burgdorferi str. CA2
prokMSA_id:4300 Borrelia burgdorferi str. 25015
prokMSA_id:4304 Borrelia burgdorferi str. NE49
prokMSA_id:16983 Borrelia sp. HNM13 AF055421
prokMSA_id:19185 Borrelia hermsii strain SB82 
prokMSA_id:19331 Borrelia afzelii strain:N490 AB035405
prokMSA_id:19525 Borrelia sp. KR1 
prokMSA_id:20565 Borrelia garinii strain:F508 AB035394
prokMSA_id:21264 Borrelia sp. HNM19 AF055420
prokMSA_id:22412 Borrelia garinii strain:F669 AB035393
prokMSA_id:23336 Borrelia garinii strain:F641 AB035392
prokMSA_id:25006 Borrelia sp. TA1 
prokMSA_id:25669 Borrelia burgdorferi 
prokMSA_id:26743 Borrelia garinii strain:N346 AB035401
prokMSA_id:26944 Borrelia garinii strain:U039 AB035400
prokMSA_id:27079 Borrelia coriaceae isolate Co53 AF210134
prokMSA_id:27096 Borrelia burgdorferi strain:297 AB035408
prokMSA_id:27288 Borrelia garinii strain:F632 AB035403
prokMSA_id:27883 Borrelia garinii strain:N303 AB035387
prokMSA_id:28678 Borrelia hermsii strain MC77 AF228029
prokMSA_id:31684 Borrelia garinii strain:PBi AB035385
prokMSA_id:32451 Borrelia parkeri 
prokMSA_id:33474 Borrelia garinii strain:F624 AB035399
prokMSA_id:33625 Borrelia sp. EFL-S0100110 
prokMSA_id:34189 Borrelia garinii strain:T25 AB035388
prokMSA_id:35785 Borrelia afzelii strain:N334 AB035407
prokMSA_id:37085 Borrelia sp. HN8 AF055418
prokMSA_id:38090 Borrelia coriaceae isolate CA435 AF210136
prokMSA_id:41987 Borrelia garinii strain:N417 AB035390
prokMSA_id:43875 Borrelia coriaceae isolate CA434 AF210135
prokMSA_id:44343 Borrelia sp. TM1 
prokMSA_id:44729 Borrelia garinii strain:U063 AB035389
prokMSA_id:45376 Borrelia garinii strain:N341 AB035395
prokMSA_id:45780 Borrelia sp. HN6 AF055416
prokMSA_id:46301 Borrelia garinii strain:K269 AB035397
prokMSA_id:47110 Borrelia garinii strain:F511 AB035386
prokMSA_id:48535 Borrelia hermsii strain NM84 AF228030
prokMSA_id:49261 Borrelia garinii strain:N374 AB035396
prokMSA_id:51974 Borrelia sp. LB-2001 
prokMSA_id:52230 Borrelia garinii strain:F548 AB035391
prokMSA_id:52646 Borrelia garinii strain:N410 AB035402
prokMSA_id:52958 Borrelia afzelii strain:U001 AB035406
prokMSA_id:55311 Borrelia valaisiana strain:OS115/01
prokMSA_id:55731 Borrelia garinii strain:Tr77
prokMSA_id:55971 Borrelia valaisiana strain:OG45/01
prokMSA_id:59693 Borrelia garinii strain:Tr309
prokMSA_id:59694 Borrelia burgdorferi strain:Tr293
prokMSA_id:59695 Borrelia lusitaniae strain:Tr210 AB091821
prokMSA_id:59696 Borrelia afzelii strain:Tr96
prokMSA_id:59697 Borrelia lusitaniae strain:Tr170 AB091820
prokMSA_id:59698 Borrelia lusitaniae strain:Tr161
prokMSA_id:59699 Borrelia lusitaniae strain:Tr213 AB091822
prokMSA_id:59700 Borrelia afzelii strain:Tr38
prokMSA_id:59704 Borrelia valaisiana strain:Tr29
prokMSA_id:59841 Borrelia valaisiana strain:OS3/01
prokMSA_id:59842 Borrelia valaisiana strain:OS66/01 AB091469
prokMSA_id:59843 Borrelia valaisiana strain:OR5/01 AB091463
prokMSA_id:59846 Borrelia valaisiana strain:OC1/01
prokMSA_id:60001 Borrelia valaisiana strain:OS49
prokMSA_id:60002 Borrelia valaisiana strain:OS42
prokMSA_id:60004 Borrelia valaisiana strain:OM58/01
prokMSA_id:60005 Borrelia valaisiana strain:OM50 AB091459
prokMSA_id:60010 Borrelia valaisiana strain:OM43 AB091458
prokMSA_id:66988 Borrelia sp. HN7 AF055417
prokMSA_id:71584 Borrelia valaisiana strain:OM92/01
prokMSA_id:72227 Borrelia valaisiana strain:OS28/01
prokMSA_id:73630 Borrelia sp. I-77 
prokMSA_id:74591 Borrelia valaisiana strain:OS31
prokMSA_id:74612 Borrelia garinii strain:N337 AB035398
prokMSA_id:76818 Borrelia lonestari 
prokMSA_id:79095 Borrelia sp. BC-1 
prokMSA_id:79116 Borrelia sp. TXW-1 
prokMSA_id:79150 Borrelia sp. MI-8 
prokMSA_id:79174 Borrelia sp. SCGT-10 
prokMSA_id:79226 Borrelia sp. SCGT-8a 
prokMSA_id:79244 Borrelia sp. MI-6 
prokMSA_id:79303 Borrelia sp. SI-10 
prokMSA_id:79357 Borrelia sp. MOK-3a 
prokMSA_id:79368 Borrelia sp. MOS-1b 
prokMSA_id:79408 Borrelia sp. MI-9 
prokMSA_id:79467 Borrelia sp. FD-1 
prokMSA_id:79496 Borrelia sp. AI-1 
prokMSA_id:79528 Borrelia sp. MOD-5 
prokMSA_id:87237 Borrelia sp. LB-W100 AF529085
prokMSA_id:89055 Borrelia garinii AY129302
prokMSA_id:90093 Borrelia garinii AB111523
prokMSA_id:94239 Borrelia sp. PC-Eq17 AY147008
prokMSA_id:95373 Borrelia sp. IST4 AB111850
prokMSA_id:96034 Borrelia sp. IST4 AB111851
prokMSA_id:96377 Borrelia sp. ISTF1 AB111853
prokMSA_id:96595 Borrelia sp. IST6 AB111852
prokMSA_id:97806 Borrelia sp. ISTF2 AB111854
prokMSA_id:98539 Borrelia sp. IST7 AB111849
2.27.4 LEPTOSPIRA_SUBDIVISION 43 seqs
2.27.4.1 LEPTOSPIRA_GROUP 41 seqs
2.27.4.1.1 LPS.INTERROGANS_SUBGROUP 24 seqs
2.27.4.1.1.6470 OTU 1 seq
prokMSA_id:67836 spirochete clone 44a-B1-48 
2.27.4.1.1.6480 OTU 2 seqs
prokMSA_id:4335 Leptospira fainei str. SSI 5402-98
prokMSA_id:4349 Leptospira fainei str. Hurstbridge
2.27.4.1.1.6496 OTU 16 seqs
prokMSA_id:4305 Leptospira santarosai str. Shermani 1342K ATCC 43286
prokMSA_id:4306 Leptospira borgpetersenii str. Hardjo bovis/Sponselee isolat
prokMSA_id:4307 Leptospira weilii str. Sarmin isolate WB46
prokMSA_id:4310 Leptospira interrogans str. icterohaemorrhagiae RGA
prokMSA_id:4333 Leptospira borgpetersenii str. Moulton serovar canicola
prokMSA_id:4342 Leptospira weilii str. Worsfold isolate WA 52
prokMSA_id:4343 Leptospira weilii str. Celledoni isolate WA 45 ATCC 43285
prokMSA_id:4344 Leptospira meyeri str. Ranarum ICF ATCC 43287
prokMSA_id:4348 Leptospira borgpetersenii str. Veldrat Bataviae 46 ATCC 4329
prokMSA_id:4351 Leptospira weilii str. Celledoni isolate WA 45 ATCC 43285
prokMSA_id:4357 Leptospira noguchii str. Fort Bragg isolate NB36
prokMSA_id:4359 Leptospira kirschneri str. cynopteri 3522 C
prokMSA_id:58028 Leptospira interrogans serovar lai str. 56601 chromosome I s
prokMSA_id:58029 Leptospira interrogans serovar lai str. 56601 chromosome I s
prokMSA_id:58052 Leptospira interrogans serovar lai str. 56601 chromosome I c
prokMSA_id:65605 Leptospira weilii strain Ecochallenge 
2.27.4.1.1.6512 OTU 3 seqs
prokMSA_id:4311 Leptospira borgpetersenii str. 1627 Burgas isolate BD30. U12
prokMSA_id:4346 Leptospira inadai str. lyme ATCC 43289
prokMSA_id:4347 Leptospira noguchii str. Panama CZ 214 ATCC 43288
2.27.4.1.1.6518 OTU 1 seq
prokMSA_id:4354 Leptospira santarosai str. LT81 isolate SA39
2.27.4.1.1.6525 OTU 1 seq
prokMSA_id:44594 spirochete clone SM2A10 
2.27.4.1.2 LPS.BIFLEXA_SUBGROUP 17 seqs
2.27.4.1.2.6616 OTU 17 seqs
prokMSA_id:4360 Leptospira sp. str. A-183
prokMSA_id:4361 Leptospira sp. str. A-183. M88721
prokMSA_id:4370 Leptospira biflexa str. Porto
prokMSA_id:4372 Leptospira biflexa str. Tororo ATCC 23583. Z26969
prokMSA_id:4373 Leptospira biflexa subsp. Tororo str. mutant 1/1993
prokMSA_id:4374 Leptospira biflexa subsp. Tororo str. mutant 2/1993. Z98592
prokMSA_id:4375 Leptospira biflexa subsp. Tororo str. mutant 2/1994
prokMSA_id:4376 Leptospira biflexa subsp. Tororo str. mutant 3/1993
prokMSA_id:4377 Leptospira biflexa subsp. Tororo str. mutant 3/1994
prokMSA_id:4378 Leptospira biflexa subsp. Tororo str. mutant 6/1993
prokMSA_id:4379 Leptospira biflexa subsp. Tororo str. mutant 6/1994
prokMSA_id:4380 Leptospira biflexa str. Tororo parent strain
prokMSA_id:4381 Leptospira biflexa
prokMSA_id:4382 Leptospira biflexa
prokMSA_id:4383 Leptospira biflexa str. patoc Patoc 1
prokMSA_id:4384 Leptospira wolbachii str. CDC Biflexa ATCC 43284
prokMSA_id:32731 Leptospira meyeri 
2.27.4.2 LEPTONEMA_GROUP 2 seqs
2.27.4.2.6539 OTU 2 seqs
prokMSA_id:4386 Leptonema illini str. 3055. M88719
prokMSA_id:4396 Leptonema illini str. 3055
2.28 PROTEOBACTERIA 10968 seqs
2.28.1 ALPHA_SUBDIVISION 3235 seqs
2.28.1.1 RDV.SALINARUM_GROUP 4 seqs
2.28.1.1.6715 OTU 1 seq
prokMSA_id:4399 Rhodovibrio salinarum NCIMB 2243
2.28.1.1.7204 OTU 1 seq
prokMSA_id:78120 alpha clone:Rs-M75
2.28.1.1.7248 OTU 1 seq
prokMSA_id:70396 mle1-13 
2.28.1.1.7431 OTU 1 seq
prokMSA_id:62473 Rhodovibrio sodomensis strain SG3105
2.28.1.2 RHODOPILA_GROUP 189 seqs
2.28.1.2.2 RSC.THIOSULFATOPHILUS_SUBGROUP 1 seq
2.28.1.2.2.7448 OTU 1 seq
prokMSA_id:4404 clone LB3-94
2.28.1.2.3 RPL.GLOBIFORMIS_SUBGROUP 39 seqs
2.28.1.2.3.6708 OTU 2 seqs
prokMSA_id:39419 Acetobacteraceae clone KL-2-4-8 AF408324
prokMSA_id:77305 Roseomonas sp. SAFR-014 
2.28.1.2.3.6783 OTU 2 seqs
prokMSA_id:60465 Roseomonas genomospecies 4 
prokMSA_id:75114 Roseomonas genomospecies 4 strain ATCC 49959 
2.28.1.2.3.6832 OTU 1 seq
prokMSA_id:63335 clone RCP2-88 
2.28.1.2.3.6834 OTU 1 seq
prokMSA_id:63336 clone RCP2-10 
2.28.1.2.3.6841 OTU 1 seq
prokMSA_id:4410 Rhodopila globiformis str. 7950 DSM 161
2.28.1.2.3.6852 OTU 1 seq
prokMSA_id:4412 clone OPT5
2.28.1.2.3.6853 OTU 1 seq
prokMSA_id:4413 Paracraurococcus QSSC5-3 str. QSSC5-3
2.28.1.2.3.6856 OTU 1 seq
prokMSA_id:4415 Craurococcus roseus str. NS130
2.28.1.2.3.6872 OTU 1 seq
prokMSA_id:4417 Acidosphaera rubrifaciens str. HS-AP3
2.28.1.2.3.6992 OTU 2 seqs
prokMSA_id:26912 KF-JG30-B12 
prokMSA_id:73222 KF-JG30-B10 
2.28.1.2.3.7106 OTU 15 seqs
prokMSA_id:24986 str. 96446 
prokMSA_id:26143 str. 47076 
prokMSA_id:55243 Muricoccus roseus 
prokMSA_id:59735 Roseomonas sp. MDA5527 
prokMSA_id:60463 Roseomonas sp. NML94-0193 
prokMSA_id:60464 Roseomonas sp. NML97-0121 
prokMSA_id:60474 Roseomonas gilardii 
prokMSA_id:60996 Alpha 1461A 
prokMSA_id:70407 Roseomonas sp. NML98-0157 
prokMSA_id:74557 Roseomonas sp. NML98-0009 AF533358
prokMSA_id:75079 Roseomonas gilardii strain E9464 
prokMSA_id:75313 Roseomonas gilardii strain ATCC 49956 
prokMSA_id:83064 Roseomonas sp. BON 1 
prokMSA_id:85056 Roseomonas gilardii 
prokMSA_id:92249 Roseomonas sp. 040703/248107A AY360348
2.28.1.2.3.7230 OTU 1 seq
prokMSA_id:42326 isolate LMG19505
2.28.1.2.3.7320 OTU 1 seq
prokMSA_id:42768 GKS2-218 
2.28.1.2.3.7361 OTU 1 seq
prokMSA_id:41076 thermal soil clone YNPFFP86 
2.28.1.2.3.7377 OTU 1 seq
prokMSA_id:81029 alpha clone W2b-8C 
2.28.1.2.3.7388 OTU 1 seq
prokMSA_id:78172 alpha clone:Rs-H51
2.28.1.2.3.7408 OTU 1 seq
prokMSA_id:33392 Acidisphaera sp. NO-15 
2.28.1.2.3.7426 OTU 1 seq
prokMSA_id:17264 MS5 
2.28.1.2.3.7452 OTU 1 seq
prokMSA_id:4407 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 
2.28.1.2.3.7500 OTU 2 seqs
prokMSA_id:60580 clone B35 
prokMSA_id:60590 clone G62 
2.28.1.2.3.7610 OTU 1 seq
prokMSA_id:40191 KF-JG30-C23 
2.28.1.2.4 ABA.ACETI_SUBGROUP 121 seqs
2.28.1.2.4.6637 OTU 23 seqs
prokMSA_id:4452 Acetobacter aceti JCM 7641
prokMSA_id:4453 Acetobacter aceti str. SRI1321
prokMSA_id:4469 Acetobacter aceti NCIMB 8621
prokMSA_id:18427 Acetobacter indonesiensis strain:LMG 1571
prokMSA_id:22182 Acetobacter estunensis 
prokMSA_id:25708 Acetobacter indonesiensis strain:1B-M19D
prokMSA_id:25818 Acetobacter orientalis strain:21F-2
prokMSA_id:27422 Acetobacter tropicalis strain:Y-1BM
prokMSA_id:29322 Acetobacter cibinongensis strain:4H-1
prokMSA_id:34202 Acetobacter tropicalis strain:NRIC 0312 isolate:No.3
prokMSA_id:34622 Acetobacter tropicalis strain:NRIC 0312 isolate:No.39
prokMSA_id:39658 Acetobacter orientalis strain:1B-M18A
prokMSA_id:41554 Acetobacter cibinongensis strain:1BM-18C
prokMSA_id:46239 Acetobacter indonesiensis strain:NRIC 0313 AB032356
prokMSA_id:51781 Acetobacter orleanensis 
prokMSA_id:56023 Acetobacter malorum strain LMG 1746
prokMSA_id:58362 Acetobacter orleanensis strain LMG 1583
prokMSA_id:58364 Acetobacter tropicalis strain LMG 1663
prokMSA_id:58368 Acetobacter cerevisiae strain LMG 1625
prokMSA_id:58369 Acetobacter indonesiensis strain LMG 1588
prokMSA_id:58371 Acetobacter aceti strain LMG 1531
prokMSA_id:58372 Acetobacter estunensis strain LMG 1572 AJ419839
prokMSA_id:58373 Acetobacter estunensis strain LMG 1626 AJ419838
2.28.1.2.4.6662 OTU 7 seqs
prokMSA_id:4419 Acetobacter intermedius str. TF2 DSM 11804
prokMSA_id:4454 Gluconacetobacter europaeus str. DES11 DSM 6160
prokMSA_id:4455 Acetobacter europaeus str. JK2
prokMSA_id:4465 Gluconacetobacter xylinus subsp. sucrofermentans str. BPR200
prokMSA_id:4466 Acetobacter ITDI2.1 str. ITDI2.1
prokMSA_id:56605 Gluconacetobacter sp. LMG 1689 
prokMSA_id:72244 A.europaeus 
2.28.1.2.4.6667 OTU 1 seq
prokMSA_id:21795 alpha YNPRH71B 
2.28.1.2.4.6766 OTU 1 seq
prokMSA_id:4411 DA004 clone vii
2.28.1.2.4.6844 OTU 1 seq
prokMSA_id:32348 WD271 clone WD271
2.28.1.2.4.6868 OTU 1 seq
prokMSA_id:4457 Gluconobacter asaii IFO 3275
2.28.1.2.4.7065 OTU 1 seq
prokMSA_id:44239 WD2108 clone WD2108
2.28.1.2.4.7080 OTU 1 seq
prokMSA_id:32874 WD295 clone WD295
2.28.1.2.4.7115 OTU 8 seqs
prokMSA_id:4420 Acetobacter sp
prokMSA_id:4423 Gluconacetobacter hansenii NCIMB 8746
prokMSA_id:4424 str. IFR101
prokMSA_id:4463 Gluconacetobacter xylinus subsp. xylinus NCIMB 11664 . X7561
prokMSA_id:21095 Gluconacetobacter entanii strain LTH4560
prokMSA_id:70289 A.xylinum X75619
prokMSA_id:71473 A.hansenii 
prokMSA_id:73040 Acetobacter sp. strain LMG 1582
2.28.1.2.4.7150 OTU 13 seqs
prokMSA_id:4429 Gluconacetobacter liquefaciens IFO 12388
prokMSA_id:4430 Gluconacetobacter sacchari str. IF9645
prokMSA_id:4431 Gluconacetobacter sacchari str. IF2-6
prokMSA_id:4432 Gluconacetobacter sacchari str. IF9701
prokMSA_id:4433 Gluconacetobacter sacchari str. SRI1953
prokMSA_id:4435 Gluconacetobacter sacchari str. SRI1853
prokMSA_id:4436 Gluconacetobacter sacchari str. SRI1794
prokMSA_id:4437 Gluconacetobacter sacchari str. SRI1216
prokMSA_id:4438 Gluconacetobacter sacchari str. SRI1230
prokMSA_id:4439 Gluconacetobacter sacchari str. SRI1951
prokMSA_id:4441 Gluconacetobacter liquefaciens str. SRI1994
prokMSA_id:4443 Gluconacetobacter liquefaciens str. SRI1957
prokMSA_id:72097 A.liquefaciens 
2.28.1.2.4.7284 OTU 1 seq
prokMSA_id:86451 Gluconacetobacter diazotrophicus clone CFN-Cf52 
2.28.1.2.4.7414 OTU 1 seq
prokMSA_id:4442 Acetobacter sp. str. SRI1939
2.28.1.2.4.7417 OTU 1 seq
prokMSA_id:4445 clone WCHB1-87
2.28.1.2.4.7427 OTU 1 seq
prokMSA_id:4446 clone DA007
2.28.1.2.4.7430 OTU 1 seq
prokMSA_id:4448 str. from 400 mbsl of lake Baikal RUSSIA
2.28.1.2.4.7439 OTU 1 seq
prokMSA_id:4440 str. SRI1941
2.28.1.2.4.7456 OTU 1 seq
prokMSA_id:82490 Gluconacetobacter diazotrophicus clone 1-05 
2.28.1.2.4.7459 OTU 6 seqs
prokMSA_id:4462 Gluconacetobacter diazotrophicus str. SRI1990
prokMSA_id:73674 A.diazotrophicus 
prokMSA_id:83463 Gluconacetobacter diazotrophicus clone UAP-Ac7 
prokMSA_id:83645 Gluconacetobacter diazotrophicus clone Psp22 
prokMSA_id:85095 Gluconacetobacter diazotrophicus clone UAP-Cf51 
prokMSA_id:85491 Gluconacetobacter diazotrophicus clone UAP-Ac10 
2.28.1.2.4.7472 OTU 4 seqs
prokMSA_id:4427 Gluconobacter oxydans subsp. oxydans DSM 3503
prokMSA_id:4428 Gluconobacter oxydans str. SRI1995
prokMSA_id:72941 Gluconobacter oxydans 
prokMSA_id:82086 Gluconobacter oxydans strain 39PCAac1 
2.28.1.2.4.7529 OTU 10 seqs
prokMSA_id:4425 Acetobacter PA2.2 str. PA2.2. AF062474
prokMSA_id:4450 Acetobacter intermedius str. ZIM B025 JKD
prokMSA_id:4451 Acetobacter intermedius str. ZIM B025 JK3. AJ012699
prokMSA_id:4467 Acetobacter europaeus str. ZIM B028 V3. AJ012698
prokMSA_id:36976 Acetobacter azotocaptans 
prokMSA_id:67745 Kozakia baliensis strain:Yo-3
prokMSA_id:67747 Kozakia baliensis strain:Wa-5
prokMSA_id:67750 Kozakia baliensis strain:Ri-1
prokMSA_id:82919 Gluconacetobacter diazotrophicus clone PAl3 
prokMSA_id:85459 Gluconacetobacter diazotrophicus clone 4-02 
2.28.1.2.4.7565 OTU 1 seq
prokMSA_id:21346 clone Tc76 
2.28.1.2.4.7600 OTU 35 seqs
prokMSA_id:4418 Acetobacter pasteurianus str. LMD 22.1 LMG 1262
prokMSA_id:4421 Acetobacter pomorum str. LTH 2458 DSM 11825
prokMSA_id:4456 Gluconobacter cerinus IFO 3267
prokMSA_id:4464 Gluconobacter frateurii IFO 3264
prokMSA_id:4472 Gluconobacter cerinus 
prokMSA_id:17998 Halobharath swaminathanianus strain PA 51 
prokMSA_id:23292 Acetobacter sp. DOR AF111841
prokMSA_id:27254 Asaia sp. 85 AB025932
prokMSA_id:28635 Gluconobacter cerinus strain:IFO 3276 AB063287
prokMSA_id:30702 Gluconobacter cerinus strain:IAM 1832 AB063288
prokMSA_id:35660 Asaia bogorensis strain:86 AB025929
prokMSA_id:41257 Acetobacter peroxydans 
prokMSA_id:43353 Gluconobacter cerinus strain:IFO 3267
prokMSA_id:47931 Asaia bogorensis strain:90 AB025931
prokMSA_id:58365 Acetobacter peroxydans strain LMG 1633
prokMSA_id:58366 Acetobacter pomorum strain LMG 18848
prokMSA_id:58367 Acetobacter pasteurianus strain LMG 1629
prokMSA_id:65495 Acetobacter pasteurianus strain:NCI 1193 AB086016
prokMSA_id:87151 Acidomonas methanolica complete strain: TS0143 AB110713
prokMSA_id:87268 Acidomonas methanolica complete strain: TS0128 AB110710
prokMSA_id:87327 Acidomonas methanolica complete strain: TS0145 AB110714
prokMSA_id:87360 Acidomonas methanolica complete strain: TS0114 AB110707
prokMSA_id:87384 Acidomonas methanolica complete strain: TS0117 AB110708
prokMSA_id:87399 Acidomonas methanolica complete strain: TS0135 AB110712
prokMSA_id:87445 Acidomonas methanolica complete strain: LMG1669 AB110704
prokMSA_id:87481 Acidomonas methanolica complete strain: TS0156 AB110715
prokMSA_id:87580 Acidomonas methanolica complete strain: LMG1735 AB110705
prokMSA_id:87641 Acidomonas methanolica complete strain: TS0131 AB110711
prokMSA_id:87665 Acidomonas methanolica complete strain: TS0121 AB110709
prokMSA_id:87740 Acidomonas methanolica complete strain: NRIC0498 AB110702
prokMSA_id:87858 Acidomonas methanolica complete strain: LMG1667 AB110703
prokMSA_id:87902 Acidomonas methanolica complete strain: TS0101 AB110706
prokMSA_id:95258 Asaia krungthepensis strain:AA06 AB102955
prokMSA_id:96639 Asaia krungthepensis strain:AA09 AB102954
prokMSA_id:97066 Asaia krungthepensis strain:AA08 AB102953
2.28.1.2.4.7619 OTU 1 seq
prokMSA_id:46484 Acetobacter lovaniensis 
2.28.1.2.5 ACDP.CRYPTUM_SUBGROUP 28 seqs
2.28.1.2.5.6779 OTU 2 seqs
prokMSA_id:4474 Acidocella facilis str. PW2 ATCC 35904
prokMSA_id:45483 Acidocella sp
2.28.1.2.5.6795 OTU 2 seqs
prokMSA_id:22545 Acidocella sp. LGS-3 
prokMSA_id:50531 Acidocella sp. WJB-3 
2.28.1.2.5.6843 OTU 1 seq
prokMSA_id:43037 WD248 clone WD248
2.28.1.2.5.6934 OTU 1 seq
prokMSA_id:4475 str. SRS1
2.28.1.2.5.6940 OTU 1 seq
prokMSA_id:4478 clone OPB40
2.28.1.2.5.6950 OTU 1 seq
prokMSA_id:4479 Acidiphilium acidophilum ATCC 27807
2.28.1.2.5.7027 OTU 1 seq
prokMSA_id:70861 Acidocella sp. IS10 
2.28.1.2.5.7057 OTU 2 seqs
prokMSA_id:4491 Acidocella aminolytica str. 101 JCM 8796
prokMSA_id:4492 Acidocella sp. str. GS19h. X91797
2.28.1.2.5.7066 OTU 1 seq
prokMSA_id:39575 Acidocella sp. NO-12 
2.28.1.2.5.7092 OTU 14 seqs
prokMSA_id:4476 Acidiphilium cryptum str. B-Het4
prokMSA_id:4477 Acidiphilium organovorum ATCC 43141
prokMSA_id:4490 clone cOS6
prokMSA_id:4493 Acidiphilium multivorum AIU 301
prokMSA_id:4495 Acidiphilium multivorum AIU 303
prokMSA_id:4496 Acidiphilium MBIC4287 str. MBIC4287
prokMSA_id:4502 Acidiphilium cryptum ATCC 33463
prokMSA_id:4503 Acidiphilium cryptum str. Kuesel IFV
prokMSA_id:4505 Acidiphilium sp. str. GS18h
prokMSA_id:28295 Acidiphilium sp. NO-14 
prokMSA_id:47077 Acidiphilium sp. SJH 
prokMSA_id:63337 clone RCP1-78 
prokMSA_id:66871 clone M2-70 AY096140
prokMSA_id:72048 Acidiphilium sp. MPH3 
2.28.1.2.5.7089 OTU 1 seq
prokMSA_id:4497 Acidiphilium sp. str. C-1
2.28.1.2.5.7623 OTU 1 seq
prokMSA_id:53994 WD238 clone WD238
2.28.1.4 AZOSPIRILLUM_GROUP 167 seqs
2.28.1.4.1 R.RUBRUM_SUBGROUP 26 seqs
2.28.1.4.1.6717 OTU 3 seqs
prokMSA_id:4512 IFO 14922. AB000479
prokMSA_id:4513 IFO 13617. AB000480
prokMSA_id:56046 Aquaspirillum peregrinum subsp. integrum 
2.28.1.4.1.6740 OTU 1 seq
prokMSA_id:55857 Roseospira marina strain CE2105
2.28.1.4.1.6806 OTU 1 seq
prokMSA_id:78030 Roseospira navarrense strain navarrense
2.28.1.4.1.6881 OTU 1 seq
prokMSA_id:4509 Rhodospira trueperi
2.28.1.4.1.6976 OTU 2 seqs
prokMSA_id:43239 Azospirillum sp. 5C variant 1 
prokMSA_id:45811 Azospirillum sp. 5C variant 2 AF413109
2.28.1.4.1.7024 OTU 1 seq
prokMSA_id:79281 alpha clone P_wp0211 
2.28.1.4.1.7109 OTU 4 seqs
prokMSA_id:4514 str. MBIC1474
prokMSA_id:20957 clone 4-Org1-12 
prokMSA_id:80090 Marine B-4 
prokMSA_id:80223 Marine M-5 
2.28.1.4.1.7198 OTU 2 seqs
prokMSA_id:4516 Rhodospirillum photometricum str. E-11
prokMSA_id:68790 Rhodospirillum photometricum 
2.28.1.4.1.7239 OTU 1 seq
prokMSA_id:35557 Thalassospira lucentensis 
2.28.1.4.1.7313 OTU 1 seq
prokMSA_id:25696 clone 4-Org1-58 
2.28.1.4.1.7340 OTU 1 seq
prokMSA_id:78776 clone JG30-KF-AS50
2.28.1.4.1.7401 OTU 5 seqs
prokMSA_id:18725 clone 4-Org1-59 
prokMSA_id:27957 Marine SCRIPPS_94 
prokMSA_id:43487 alphaproteobacterium 4alphavs17 strain alphavs17
prokMSA_id:79518 Alpha UMB1A 
prokMSA_id:85257 Alpha CJ11073 
2.28.1.4.1.7573 OTU 1 seq
prokMSA_id:77884 Roseospira sp. AT2115 
2.28.1.4.1.7628 OTU 2 seqs
prokMSA_id:4508 Rhodospirillum rubrum str. ATH 1.1.1; S.1 ATCC 11170
prokMSA_id:4511 Rhodospirillum rubrum
2.28.1.4.2 MAG.GRYPHISWALDENSE_SUBGROUP 40 seqs
2.28.1.4.2.6640 OTU 1 seq
prokMSA_id:44956 rape rhizosphere wr0007 
2.28.1.4.2.6758 OTU 5 seqs
prokMSA_id:33368 rape rhizosphere wr0200 
prokMSA_id:58087 Ellin361 AF498743
prokMSA_id:58088 Ellin360 AF498742
prokMSA_id:58109 Ellin333 AF498715
prokMSA_id:75071 alpha clone Sh765B-TzT-31
2.28.1.4.2.6807 OTU 12 seqs
prokMSA_id:17960 clone d021 
prokMSA_id:21627 clone d157 
prokMSA_id:31003 clone d047 
prokMSA_id:35285 clone d163 
prokMSA_id:36229 clone d088 AF422667
prokMSA_id:39067 clone d155 AF422678
prokMSA_id:40115 clone d033 
prokMSA_id:40501 clone d023 
prokMSA_id:48292 clone d037 AF422645
prokMSA_id:49057 clone d029 AF422640
prokMSA_id:89350 DSSD44 AY328742
prokMSA_id:90210 DSSD57 AY328755
2.28.1.4.2.6922 OTU 1 seq
prokMSA_id:78316 Dechlorospirillum sp. SN1 
2.28.1.4.2.6956 OTU 1 seq
prokMSA_id:4520 clone HstpL69
2.28.1.4.2.6961 OTU 1 seq
prokMSA_id:4523 str. from 400 mbsl of lake Baikal RUSSIA
2.28.1.4.2.6998 OTU 1 seq
prokMSA_id:4529 Dechlorospirillum WD str. WD
2.28.1.4.2.7138 OTU 1 seq
prokMSA_id:47933 alpha clone SM2D12 
2.28.1.4.2.7207 OTU 1 seq
prokMSA_id:47123 alpha kpc47rc 
2.28.1.4.2.7294 OTU 1 seq
prokMSA_id:19497 clone t047 
2.28.1.4.2.7400 OTU 1 seq
prokMSA_id:77302 K-5b5 
2.28.1.4.2.7412 OTU 1 seq
prokMSA_id:4535 Phaeospirillum fulvum str. 1360 NCIMB 11762
2.28.1.4.2.7413 OTU 1 seq
prokMSA_id:4536 clone HstpL24
2.28.1.4.2.7418 OTU 2 seqs
prokMSA_id:4530 Magnetospirillum sp. str. MSM-3
prokMSA_id:4531 Magnetospirillum sp. str. MSM-4
2.28.1.4.2.7424 OTU 1 seq
prokMSA_id:4539 unnamed organism
2.28.1.4.2.7561 OTU 7 seqs
prokMSA_id:4518 Magnetospirillum magnetotacticum. M58171
prokMSA_id:4519 Magnetospirillum magnetotacticum DSM 3856 . NONE
prokMSA_id:4522 Magnetospirillum sp. str. MSM-6
prokMSA_id:4524 Magnetospirillum magnetotacticum DSM 3856 . Y10110
prokMSA_id:4525 Magnetospirillum sp. str. AMB-1
prokMSA_id:4526 Magnetospirillum sp. str. MGT-1
prokMSA_id:35227 Phenol-degrading denitrifying spirillum CC-26 
2.28.1.4.2.7632 OTU 1 seq
prokMSA_id:37406 WD229 clone WD229
2.28.1.4.2.7652 OTU 1 seq
prokMSA_id:27559 alpha clone pA419 
2.28.1.4.4 AZS.LIPOFERUM_SUBGROUP 101 seqs
2.28.1.4.4.6626 OTU 1 seq
prokMSA_id:30490 WD2103 clone WD2103
2.28.1.4.4.6687 OTU 1 seq
prokMSA_id:42220 Azospirillum sp. B510 
2.28.1.4.4.6685 OTU 2 seqs
prokMSA_id:25178 Alpha MA2802 
prokMSA_id:32446 alpha MA2801 
2.28.1.4.4.6694 OTU 1 seq
prokMSA_id:56033 clone RCP2-92 
2.28.1.4.4.6698 OTU 3 seqs
prokMSA_id:4584 clone OCS24
prokMSA_id:4585 clone OM25
prokMSA_id:68995 EBAC37G09 ; tRNA-Ile complete ; and 23S 
2.28.1.4.4.6703 OTU 2 seqs
prokMSA_id:23291 Alpha strain 15158 
prokMSA_id:91865 Alpha PX3.14 AY337602
2.28.1.4.4.6710 OTU 2 seqs
prokMSA_id:4573 clone OM38
prokMSA_id:17396 alpha clone Arctic96A-18 
2.28.1.4.4.6732 OTU 1 seq
prokMSA_id:58862 UNSW7 
2.28.1.4.4.6776 OTU 1 seq
prokMSA_id:83629 clone CCU22 
2.28.1.4.4.6851 OTU 1 seq
prokMSA_id:59903 alpha clone ccspost211 
2.28.1.4.4.6863 OTU 1 seq
prokMSA_id:50973 Green Bay ferromanganous micronodule MNG3 
2.28.1.4.4.6869 OTU 1 seq
prokMSA_id:63342 Azospirillum sp. Mat2-1a 
2.28.1.4.4.6900 OTU 1 seq
prokMSA_id:81336 alpha clone: Rs-070
2.28.1.4.4.6905 OTU 1 seq
prokMSA_id:34409 Alpha SOGA19 
2.28.1.4.4.6918 OTU 4 seqs
prokMSA_id:63269 clone FW93 
prokMSA_id:76700 alpha clone JG37-AG-11 AJ518764
prokMSA_id:78724 alpha clone JG30-KF-C3
prokMSA_id:93769 alpha clone KCM-C-45 AJ581616
2.28.1.4.4.6959 OTU 2 seqs
prokMSA_id:4589 Rhodocista centenaria IAM 14193 . D12701
prokMSA_id:69358 Rhodocista pekingense 
2.28.1.4.4.6990 OTU 1 seq
prokMSA_id:25641 sludge A3 
2.28.1.4.4.6993 OTU 1 seq
prokMSA_id:4574 clone OM75
2.28.1.4.4.6997 OTU 1 seq
prokMSA_id:25464 Elbe River snow isolate Iso40 
2.28.1.4.4.7028 OTU 1 seq
prokMSA_id:55487 clone FW51 
2.28.1.4.4.7058 OTU 1 seq
prokMSA_id:4586 Azospirillum TTI str. TTI
2.28.1.4.4.7123 OTU 4 seqs
prokMSA_id:75429 alpha clone JG36-TzT-23
prokMSA_id:75684 alpha clone JG36-TzT-195
prokMSA_id:76590 alpha clone JG37-AG-20
prokMSA_id:76595 alpha clone JG37-AG-102 AJ518774
2.28.1.4.4.7137 OTU 2 seqs
prokMSA_id:4575 str. HD-1
prokMSA_id:79172 clone I13 
2.28.1.4.4.7148 OTU 2 seqs
prokMSA_id:45257 thermal soil clone YNPFFP57 
prokMSA_id:45882 thermal soil clone YNPFFP3 AF391979
2.28.1.4.4.7159 OTU 1 seq
prokMSA_id:24244 Endosymbiont of Acanthamoeba sp. UWC9 
2.28.1.4.4.7157 OTU 2 seqs
prokMSA_id:60700 alpha clone ASL45 
prokMSA_id:74301 alpha clone ASL6 
2.28.1.4.4.7163 OTU 1 seq
prokMSA_id:70400 clone 49525 
2.28.1.4.4.7175 OTU 26 seqs
prokMSA_id:16678 alpha HOC43 
prokMSA_id:17000 alpha HOC48 AB054182
prokMSA_id:20547 alpha HOC42 
prokMSA_id:21146 alpha HOC4 
prokMSA_id:22043 alpha HOC44 
prokMSA_id:22342 alpha HOC6 AB054140
prokMSA_id:23317 alpha HOC24 
prokMSA_id:24176 alpha HOC32 AB054166
prokMSA_id:24637 alpha HOC8 
prokMSA_id:26396 alpha HOC17 AB054151
prokMSA_id:26958 alpha HOC26 
prokMSA_id:31227 alpha HOC7 
prokMSA_id:34613 alpha HOC10 
prokMSA_id:36213 alpha HOC20 AB054154
prokMSA_id:36320 alpha HOC45 
prokMSA_id:36723 alpha HOC13 
prokMSA_id:40299 alpha HOC18 AB054152
prokMSA_id:40336 alpha HOC16 
prokMSA_id:41079 alpha HOC19 
prokMSA_id:42614 alpha HOC15 AB054149
prokMSA_id:43501 alpha HOC14 
prokMSA_id:45239 alpha HOC30 AB054164
prokMSA_id:45712 alpha HOC35 
prokMSA_id:49588 alpha HOC1 AB054135
prokMSA_id:49607 alpha HOC11 
prokMSA_id:51928 alpha HOC9 AB054143
2.28.1.4.4.7171 OTU 2 seqs
prokMSA_id:4549 Azospirillum sp. str. 4 AZ DSM 4834
prokMSA_id:4555 Azospirillum sp. str. 5 AZ DSM 4835
2.28.1.4.4.7179 OTU 1 seq
prokMSA_id:46623 clone d064 
2.28.1.4.4.7200 OTU 1 seq
prokMSA_id:32545 isolate HRV35
2.28.1.4.4.7222 OTU 1 seq
prokMSA_id:60574 clone B79 
2.28.1.4.4.7307 OTU 1 seq
prokMSA_id:50928 alpha kpj324rc 
2.28.1.4.4.7387 OTU 1 seq
prokMSA_id:28753 alpha KEppib19 
2.28.1.4.4.7464 OTU 1 seq
prokMSA_id:4545 Azospirillum irakense str. KBC1
2.28.1.4.4.7467 OTU 1 seq
prokMSA_id:4546 Azospirillum sp. str. ASP-1
2.28.1.4.4.7469 OTU 1 seq
prokMSA_id:4547 Azospirillum amazonense str. Y-1 DSM 2787
2.28.1.4.4.7475 OTU 1 seq
prokMSA_id:4548 unnamed organism
2.28.1.4.4.7496 OTU 1 seq
prokMSA_id:4550 clone HstpL36
2.28.1.4.4.7507 OTU 1 seq
prokMSA_id:4552 Azospirillum sp. str. 137/5
2.28.1.4.4.7503 OTU 1 seq
prokMSA_id:4551 Trojanella thessalonices str. L13
2.28.1.4.4.7510 OTU 5 seqs
prokMSA_id:4583 clone OCS28
prokMSA_id:68978 alpha MB13G10 ; tRNA-Ile complete ; and 23S 
prokMSA_id:68980 alpha MB12F11 ; tRNA-Ile complete ; and 23S 
prokMSA_id:68981 alpha MB12C06 ; tRNA-Ile complete ; and 23S 
prokMSA_id:68991 alpha MB11B10 ; tRNA-Ile complete ; and 23S 
2.28.1.4.4.7516 OTU 1 seq
prokMSA_id:4554 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 
2.28.1.4.4.7521 OTU 1 seq
prokMSA_id:32841 Defluvicoccus vanus 
2.28.1.4.4.7519 OTU 1 seq
prokMSA_id:72555 alpha CHAB-III-8 5' 
2.28.1.4.4.7538 OTU 1 seq
prokMSA_id:33613 alpha YNPRH85B 
2.28.1.4.4.7539 OTU 2 seqs
prokMSA_id:77815 Rhodocista sp. AT2107 
prokMSA_id:78339 Rhodocista sp. AR2107 
2.28.1.4.4.7551 OTU 1 seq
prokMSA_id:52333 alpha MERTZ_2CM_62 
2.28.1.4.4.7559 OTU 1 seq
prokMSA_id:36094 alpha ARCT1-17 
2.28.1.4.4.7563 OTU 1 seq
prokMSA_id:41918 Azospirillum sp. B52 
2.28.1.4.4.7575 OTU 2 seqs
prokMSA_id:75527 alpha clone JG37-AG-119 AJ518777
prokMSA_id:75660 alpha clone JG37-AG-79
2.28.1.4.4.7616 OTU 1 seq
prokMSA_id:45099 alpha clone BIxi22
2.28.1.4.4.7644 OTU 1 seq
prokMSA_id:78233 alpha clone:Rs-D39
2.28.1.4.4.7647 OTU 1 seq
prokMSA_id:76633 alpha clone GuBH2-AD-23
2.28.1.5 OSP.PUSILLUM_GROUP 3 seqs
2.28.1.5.7088 OTU 1 seq
prokMSA_id:32879 alpha MERTZ_2CM_305a 
2.28.1.5.7119 OTU 1 seq
prokMSA_id:4594 Oceanospirillum pusillum IFO 13613
2.28.1.5.7177 OTU 1 seq
prokMSA_id:19713 marine 
2.28.1.6 RHIZOBIUM-AGROBACTERIUM_GROUP 1382 seqs
2.28.1.6.1 STA.STELLULATA_SUBGROUP 35 seqs
2.28.1.6.1.6672 OTU 1 seq
prokMSA_id:45402 Marine SE83 
2.28.1.6.1.6726 OTU 1 seq
prokMSA_id:74769 Alpha AP-20 
2.28.1.6.1.6912 OTU 9 seqs
prokMSA_id:26810 Achromobacter sp. LMG5410 
prokMSA_id:31969 alpha isolate C6/8 AJ314748
prokMSA_id:39707 alpha isolate C6/17 AJ314749
prokMSA_id:47270 Alpha C6-19 isolate C6-19 AJ400704
prokMSA_id:70672 Achromobacter sp. LMG5431 
prokMSA_id:72136 Achromobacter sp. LMG5430 
prokMSA_id:74042 Achromobacter sp. LMG5411 
prokMSA_id:76483 MF_clone_123 
prokMSA_id:90998 K56 AY345464
2.28.1.6.1.6920 OTU 4 seqs
prokMSA_id:4601 str. MBIC3368
prokMSA_id:27269 Alpha NW001 
prokMSA_id:36381 Alpha MBIC3368 
prokMSA_id:60397 Alpha LA33B 
2.28.1.6.1.6954 OTU 3 seqs
prokMSA_id:31584 Paracoccus sp. isolate PRLISY02 
prokMSA_id:35391 Bartonella sp. isolate PRLIST01 
prokMSA_id:41538 isolate PRLIST07 
2.28.1.6.1.6952 OTU 3 seqs
prokMSA_id:4600 str. MBIC3366. AB012760
prokMSA_id:4608 str. MBIC3865. AB015896
prokMSA_id:53790 Alpha kbc11 
2.28.1.6.1.7107 OTU 10 seqs
prokMSA_id:4599 str. MBIC3993
prokMSA_id:4604 Agrobacterium stellulatum IAM 12614
prokMSA_id:4606 unnamed organism -- macronuclear
prokMSA_id:4607 unnamed organism -- macronuclear
prokMSA_id:4610 str. MBIC1535
prokMSA_id:42788 Crassostrea virginica symbiont CV902-700 
prokMSA_id:70630 Unknown marine alpha JP22.1 
prokMSA_id:82237 Agrobacterium sp. SP25 
prokMSA_id:88655 Stappia sp. M8 AY307927
prokMSA_id:91003 K2-26 AY345441
2.28.1.6.1.7583 OTU 4 seqs
prokMSA_id:4598 Stappia stellulata IAM 12621
prokMSA_id:4603 str. PTB-5
prokMSA_id:4605 unnamed organism -- macronuclear
prokMSA_id:4609 str. HTB015. AB010864
2.28.1.6.2 HYP.DENITRIFICANS_SUBGROUP 33 seqs
2.28.1.6.2.6978 OTU 1 seq
prokMSA_id:4613 clone HstpL31
2.28.1.6.2.7001 OTU 1 seq
prokMSA_id:4616 str. JTB131
2.28.1.6.2.7012 OTU 2 seqs
prokMSA_id:21263 alpha MERTZ_21CM_88 
prokMSA_id:48953 alpha MERTZ_0CM_183 
2.28.1.6.2.7170 OTU 1 seq
prokMSA_id:46020 Alpha A0839 
2.28.1.6.2.7209 OTU 1 seq
prokMSA_id:49373 alpha MERTZ_21CM_114 
2.28.1.6.2.7226 OTU 1 seq
prokMSA_id:84103 clone CCM16b 
2.28.1.6.2.7306 OTU 1 seq
prokMSA_id:26724 clone LO13.3 
2.28.1.6.2.7389 OTU 5 seqs
prokMSA_id:4611 Pedomicrobium americanum ACM 3090
prokMSA_id:4612 Pedomicrobium australicum IFAM ST-1306
prokMSA_id:4614 Pedomicrobium australicum IFAM WD1355
prokMSA_id:4615 Pedomicrobium sp. ACM 3067
prokMSA_id:4618 Pedomicrobium ferrugineum ACM 3037
2.28.1.6.2.7422 OTU 1 seq
prokMSA_id:28949 clone 49512 
2.28.1.6.2.7428 OTU 2 seqs
prokMSA_id:4624 clone 4953 
prokMSA_id:50436 clone 49518 AF097812
2.28.1.6.2.7473 OTU 1 seq
prokMSA_id:56510 clone a13111 
2.28.1.6.2.7479 OTU 1 seq
prokMSA_id:47454 Hyphomicrobium sp. CM2 
2.28.1.6.2.7487 OTU 1 seq
prokMSA_id:23276 Green Bay ferromanganous micronodule MNH2 
2.28.1.6.2.7641 OTU 14 seqs
prokMSA_id:4620 Hyphomicrobium M3 str. M3 ATCC 202122
prokMSA_id:4621 Hyphomicrobium facile subsp. tolerans IFAM I-551 . Y14311
prokMSA_id:4622 Hyphomicrobium facile subsp. facile IFAM H-526 . Y14309
prokMSA_id:4623 Hyphomicrobium facilis IFAM B522. Y14312
prokMSA_id:4625 Hyphomicrobium facile subsp. ureaphilum IFAM CO-582 . Y14310
prokMSA_id:4626 Hyphomicrobium methylovorum str. MBIC3196
prokMSA_id:4627 Hyphomicrobium methylovorum str. KM-146 DSM 5458
prokMSA_id:25781 Hyphomicrobium sp. S3 AF279788
prokMSA_id:27497 Pietermaritzburg Y17-2 
prokMSA_id:31209 Hyphomicrobium sp. P2 AF148858
prokMSA_id:40973 Hyphomicrobium sp. S4 AF279789
prokMSA_id:45287 Hyphomicrobium sp. HM 
prokMSA_id:68656 clone KRA30-08 
prokMSA_id:79050 alpha clone JG30-KF-C30 AJ536858
2.28.1.6.3 HYP.ZAVARZINII_SUBGROUP 74 seqs
2.28.1.6.3.7167 OTU 1 seq
prokMSA_id:32066 alpha MERTZ_0CM_99 
2.28.1.6.3.7409 OTU 1 seq
prokMSA_id:41463 clone 1956 
2.28.1.6.3.7447 OTU 1 seq
prokMSA_id:34344 Hyphomicrobium vulgare part
2.28.1.6.3.7506 OTU 1 seq
prokMSA_id:4639 clone 1951 
2.28.1.6.3.7505 OTU 1 seq
prokMSA_id:4638 Pedomicrobium fusiforme DSM 5304
2.28.1.6.3.7530 OTU 1 seq
prokMSA_id:4640 clone 49520 
2.28.1.6.3.7646 OTU 68 seqs
prokMSA_id:4630 Hyphomicrobium hollandicum IFAM KB-677
prokMSA_id:4632 Hyphomicrobium zavarzinii IFAM ZV-622
prokMSA_id:4633 Hyphomicrobium W1-1B str. W1-1B
prokMSA_id:4634 Hyphomicrobium zavarzinii ATCC 27495
prokMSA_id:4635 Hyphomicrobium aestuarii DSM 1564
prokMSA_id:4636 Hyphomicrobium vulgare str. MC-750 IFAM MC-750
prokMSA_id:4637 Hyphomicrobium zavarzinii str. ZV-580
prokMSA_id:4641 str. US-353
prokMSA_id:34544 sludge A39 
prokMSA_id:48462 Hyphomicrobium sp. SAN-1 
prokMSA_id:75991 MF_clone_16 
prokMSA_id:88141 HOClCi23 AY328572
prokMSA_id:88156 DSSF45 AY328667
prokMSA_id:88254 DSSF11 AY328634
prokMSA_id:88268 DSSF74 AY328696
prokMSA_id:88276 DSSF61 AY328683
prokMSA_id:88295 DSSF71 AY328693
prokMSA_id:88300 DSSF76 AY328698
prokMSA_id:88334 DSSF36 AY328658
prokMSA_id:88439 DSSF9 AY328632
prokMSA_id:88523 DSSF24 AY328647
prokMSA_id:88718 DSSF43 AY328665
prokMSA_id:88787 DSSF50 AY328672
prokMSA_id:88837 DSSF29 AY328651
prokMSA_id:88846 DSSF33 AY328655
prokMSA_id:88869 DSSF13 AY328636
prokMSA_id:88935 DSSF75 AY328697
prokMSA_id:88983 DSSF46 AY328668
prokMSA_id:89077 DSSF38 AY328660
prokMSA_id:89164 DSSF12 AY328635
prokMSA_id:89239 DSSF30 AY328652
prokMSA_id:89275 DSSF58 AY328680
prokMSA_id:89315 DSSF4 AY328627
prokMSA_id:89336 HOClCi41 AY328590
prokMSA_id:89363 DSSF15 AY328638
prokMSA_id:89368 DSSF44 AY328666
prokMSA_id:89378 DSSF34 AY328656
prokMSA_id:89425 DSSF77 AY328699
prokMSA_id:89450 DSSF65 AY328687
prokMSA_id:89523 DSSF20 AY328643
prokMSA_id:89575 DSSF2 AY328625
prokMSA_id:89587 DSSF32 AY328654
prokMSA_id:89614 DSSF42 AY328664
prokMSA_id:89634 DSSF25 AY328648
prokMSA_id:89675 DSSF78 AY328700
prokMSA_id:89720 DSSF37 AY328659
prokMSA_id:89808 DSSF22 AY328645
prokMSA_id:89847 HOClCi18 AY328567
prokMSA_id:89989 DSSF67 AY328689
prokMSA_id:90155 DSSF48 AY328670
prokMSA_id:90179 DSSF19 AY328642
prokMSA_id:90261 DSSF54 AY328676
prokMSA_id:90264 DSSF3 AY328626
prokMSA_id:90267 DSSF27 AY328650
prokMSA_id:90330 DSSF10 AY328633
prokMSA_id:90337 DSSF64 AY328686
prokMSA_id:90374 DSSF49 AY328671
prokMSA_id:90460 DSSF40 AY328662
prokMSA_id:90517 DSSF41 AY328663
prokMSA_id:90622 HOClCi37 AY328586
prokMSA_id:90632 DSSF73 AY328695
prokMSA_id:90671 DSSF1 AY328624
prokMSA_id:90687 DSSF35 AY328657
prokMSA_id:90705 DSSF68 AY328690
prokMSA_id:90717 DSSF6 AY328629
prokMSA_id:90732 DSSF62 AY328684
prokMSA_id:90757 DSSF47 AY328669
prokMSA_id:97510 clone mv13.4 AY424825
2.28.1.6.6 RM.VANNIELII_SUBGROUP 1 seq
2.28.1.6.6.7005 OTU 1 seq
prokMSA_id:51312 sludge S43 
2.28.1.6.7 MPI.CAPSULATA 1 seq
2.28.1.6.7.7558 OTU 1 seq
prokMSA_id:4647 Methylopila capsulata str. IM1 VKM B-1606
2.28.1.6.8 BL.VIRIDIS_ASSEMBLAGE 193 seqs
2.28.1.6.8.6638 OTU 7 seqs
prokMSA_id:4651 str. TA1-AE1
prokMSA_id:4652 str. TA12-21
prokMSA_id:4653 str. TA1-A1
prokMSA_id:17276 Ancylobacter sp. AS1.1761 
prokMSA_id:81693 Ancylobacter sp. DSM 2457 
prokMSA_id:81868 Ancylobacter sp. DSM 1277 AY211515
prokMSA_id:82106 Ancylobacter sp. DSM 1107 
2.28.1.6.8.6635 OTU 4 seqs
prokMSA_id:44127 gold mine D33 AF337887
prokMSA_id:54630 Green Bay ferromanganous micronodule MNG7 AF292997
prokMSA_id:75443 alpha clone JG34-KF-416
prokMSA_id:76050 alpha clone GuBH2-AD-10 AJ519651
2.28.1.6.8.6651 OTU 76 seqs
prokMSA_id:4681 unnamed organism. AF165267
prokMSA_id:4699 Rhodopseudomonas sp. str. ANT-P-1. D14428
prokMSA_id:4706 Rhodoplanes roseus str. 941 DSM 5909 . D14429
prokMSA_id:4707 Rhodopseudomonas sp. str. IL-245. D15063
prokMSA_id:4743 Methylosinus LW2 str. LW2. AF150786
prokMSA_id:4744 Methylosinus Methylosinus pAMC459. AF150781
prokMSA_id:4745 Methylosinus Methylosinus pAMC451. AF150780
prokMSA_id:4746 Methylosinus Methylosinus pAMC447. AF150779
prokMSA_id:4755 Methylocystis EB-1 str. EB-1. AB015608
prokMSA_id:4759 Beijerinckia indica subsp. indica ATCC 9039 . M59060
prokMSA_id:18709 clone SL14 AF379689
prokMSA_id:18717 Uni-MO2 AF283238
prokMSA_id:20054 clone LO13.9 AF358023
prokMSA_id:21038 1204-53l AJ289931
prokMSA_id:27605 clone 4404-8 AJ007647
prokMSA_id:43530 GKS2-215 AJ290032
prokMSA_id:47357 alpha clone ACK-M37 U85157
prokMSA_id:48693 alpha clone ACK-DE48 U85161
prokMSA_id:50497 II methanotroph metano-II AB040501
prokMSA_id:52053 Green Bay ferromanganous micronodule MNF4 AF292996
prokMSA_id:53533 clone:BCf3-20 AB062817
prokMSA_id:54326 clone LO13.19 AF358011
prokMSA_id:56291 Methylosinus sporium strain 44/2 AJ458468
prokMSA_id:58401 Methylosinus trichosporium AB008108
prokMSA_id:60583 clone B15 AF407716
prokMSA_id:61179 clone EOH1 AY080923
prokMSA_id:63268 clone FW8 AF523952
prokMSA_id:63270 clone FW91 AF523949
prokMSA_id:63274 clone FW138 AF523948
prokMSA_id:70100 Alpha AP-12 
prokMSA_id:71224 Methylosinus sporium strain 8 AJ458486
prokMSA_id:71647 Alpha AP-16 
prokMSA_id:74080 clone 1_32_322 AJ437459
prokMSA_id:74895 RO_isolate_11 AY159207
prokMSA_id:74901 alpha clone JG37-AG-53 AJ518770
prokMSA_id:74952 alpha clone JG36-TzT-166
prokMSA_id:74986 alpha clone JG37-AG-1 AJ518761
prokMSA_id:75138 alpha clone JG34-KF-211
prokMSA_id:75557 alpha clone JG37-AG-3 AJ518762
prokMSA_id:76270 alpha clone JG37-AG-26 AJ518768
prokMSA_id:80390 alpha clone W2b-2G AY192247
prokMSA_id:80727 alpha clone P3-3A AY192258
prokMSA_id:80921 alpha clone S2-1D AY192262
prokMSA_id:89125 HOClCi39 AY328588
prokMSA_id:93584 alpha clone JG36-GS-46 AJ582029
prokMSA_id:94332 Methylocystis sp. clone 17E-T2R21 AY203771
prokMSA_id:94382 Methylocystaceae clone 9E-T2C14 AY203750
prokMSA_id:94469 Methylocystis sp. clone 9E-T2A1 AY203755
prokMSA_id:94497 Methylocystis sp. clone 112nGW-T2H310 AY203777
prokMSA_id:94512 Methylocystis sp. clone 9E-T2C31 AY203756
prokMSA_id:94537 II methanotroph clone 8nGW-T2B122 AY203781
prokMSA_id:94586 II methanotroph clone 8nGW-T2G134 AY203753
prokMSA_id:94641 Methylocystis sp. clone 112E-T2B39 AY203773
prokMSA_id:94652 Methylocystis sp. clone 112nGW-T2K307 AY203778
prokMSA_id:94676 Methylocystis sp. clone 17nGW-T2M251 AY203770
prokMSA_id:94685 Methylocystis sp. clone 8nGW-T2E116 AY203758
prokMSA_id:94708 II methanotroph clone 8nGW-T2B108 AY203752
prokMSA_id:94719 Methylocystis sp. clone 112E-T2A12 AY203772
prokMSA_id:94742 Methylocystis sp. clone 17nGW-T2A201 AY203765
prokMSA_id:94773 Methylocystis sp. clone 112E-T2V21 AY203779
prokMSA_id:94813 II methanotroph clone 8nGW-T2X105 AY203754
prokMSA_id:94896 Methylocystis sp. clone 112E-T2D18 AY203775
prokMSA_id:94903 Methylocystis sp. clone 17nGW-T2F217 AY203767
prokMSA_id:94968 Methylocystaceae clone 9E-T2B14 AY203749
prokMSA_id:94988 Methylocystis sp. clone 17E-T2A11 AY203764
prokMSA_id:95043 Methylocystis sp. clone 17nGW-T2E208 AY203766
prokMSA_id:95051 Methylocystis sp. clone 112nGW-T2C325 AY203774
prokMSA_id:95081 Methylocystis sp. clone 17nGW-T2H214 AY203769
prokMSA_id:95085 Methylocystis sp. clone 8E-T2A1 AY203757
prokMSA_id:95124 Methylocystis sp. clone 8GW-T2FF27 AY203763
prokMSA_id:95138 Methylocystis sp. clone 112E-T2E5 AY203776
prokMSA_id:95139 Methylocystis sp. clone 8nGW-T2I132 AY203759
prokMSA_id:95155 Methylocystis sp. clone 8nGW-T2Q133 AY203760
prokMSA_id:95173 Methylocystis sp. clone 8nGW-T2R128 AY203761
prokMSA_id:95372 clone mv13.6 AY424827
prokMSA_id:97561 Alpha Shinshu-th1 AB121772
2.28.1.6.8.6660 OTU 18 seqs
prokMSA_id:4671 Xanthobacter flavus str. 301. X94199
prokMSA_id:4672 str. TV6-2b
prokMSA_id:4673 Xanthobacter flavus str. H4-14. X94202
prokMSA_id:4674 Xanthobacter flavus str. JW/KR-1. X94204
prokMSA_id:4675 Xanthobacter flavus str. JW/KR-2. X94205
prokMSA_id:4676 Xanthobacter flavus str. JW/KR-E1. X94206
prokMSA_id:4700 Xanthobacter tagetidis str. TagT2C. X99469
prokMSA_id:4701 str. Z2A-6A. AJ224615
prokMSA_id:4702 str. Z4A-2
prokMSA_id:4704 Azorhizobium caulinodans str. MAR 1568 ORS 571
prokMSA_id:4708 Azorhizobium caulinodans str. MAR 1568 ORS 571
prokMSA_id:4730 Azorhizobium caulinodans str. MAR 1568 LMG 6465 . X67221
prokMSA_id:22038 Xanthobacter sp. MN 45.1 isolate MN 45.1 AJ313028
prokMSA_id:60723 Monochloroacetic-acid-degrading MCAA1 AF532187
prokMSA_id:62751 Xanthobacter aminooxidans AF399969
prokMSA_id:68682 Xanthobacter sp. INA43/2-2 strain INA43/2-2
prokMSA_id:86452 Xanthobacter sp. 127W 
prokMSA_id:90457 Xanthobacter sp. COX AY307925
2.28.1.6.8.6670 OTU 1 seq
prokMSA_id:65463 clone a13115 
2.28.1.6.8.6707 OTU 1 seq
prokMSA_id:32314 Chelatococcus asaccharovorans strain TE2
2.28.1.6.8.6711 OTU 1 seq
prokMSA_id:82197 Corbulabacter subterraneus 
2.28.1.6.8.6738 OTU 1 seq
prokMSA_id:55851 clone HP1B78 
2.28.1.6.8.6756 OTU 1 seq
prokMSA_id:79124 clone csbio160325 
2.28.1.6.8.6780 OTU 1 seq
prokMSA_id:34088 rape rhizosphere wr0197 
2.28.1.6.8.6787 OTU 1 seq
prokMSA_id:48622 MHP14 
2.28.1.6.8.6801 OTU 1 seq
prokMSA_id:4703 Azorhizobium caulinodans
2.28.1.6.8.6822 OTU 1 seq
prokMSA_id:4694 Blastochloris viridis str. G11
2.28.1.6.8.6826 OTU 1 seq
prokMSA_id:4721 clone DA122
2.28.1.6.8.6836 OTU 1 seq
prokMSA_id:63338 clone RCP1-19 
2.28.1.6.8.6845 OTU 1 seq
prokMSA_id:49637 Alpha A0838 
2.28.1.6.8.6855 OTU 1 seq
prokMSA_id:43219 Alpha 76712 
2.28.1.6.8.6938 OTU 1 seq
prokMSA_id:20272 Metal-contaminated soil clone K20-82 
2.28.1.6.8.6945 OTU 1 seq
prokMSA_id:74124 Rhizobiales str. A48 
2.28.1.6.8.6943 OTU 1 seq
prokMSA_id:63879 Rhodoplanes sp. HA17 complete 
2.28.1.6.8.6969 OTU 1 seq
prokMSA_id:29743 Metal-contaminated soil clone K20-01 
2.28.1.6.8.6970 OTU 1 seq
prokMSA_id:47562 Rhizosphere soil clone RSC-II-82 
2.28.1.6.8.6971 OTU 1 seq
prokMSA_id:79071 Thiobacillus sp. 104 
2.28.1.6.8.7017 OTU 2 seqs
prokMSA_id:4661 Thiobacillus novellus IAM 12100
prokMSA_id:38794 Rhizobium sp. SDW045 AF345551
2.28.1.6.8.7023 OTU 1 seq
prokMSA_id:4663 Xanthobacter agilis str. SA35
2.28.1.6.8.7030 OTU 2 seqs
prokMSA_id:34126 Rhizosphere soil clone RSC-II-90 
prokMSA_id:38212 Rhizosphere soil clone RSC-II-84 
2.28.1.6.8.7067 OTU 13 seqs
prokMSA_id:4664 Blastochloris viridis ATCC 19567
prokMSA_id:4687 Blastochloris viridis ATCC 19567
prokMSA_id:4688 Blastochloris viridis DSM 133
prokMSA_id:4689 Blastochloris viridis str. UN
prokMSA_id:4691 Blastochloris viridis str. G3
prokMSA_id:4710 Blastochloris sulfoviridis DSM 729
prokMSA_id:4711 Blastochloris sulfoviridis str. ToP1
prokMSA_id:4712 Blastochloris viridis str. GI
prokMSA_id:39566 Blastochloris sulfoviridis AB033757
prokMSA_id:63558 Blastochloris sulfoviridis strain OK3G7 
prokMSA_id:63559 Blastochloris sulfoviridis strain Wai1bG3 
prokMSA_id:63562 Blastochloris sulfoviridis strain Wai3G1e 
prokMSA_id:78031 Blastochloris sp. AT2101 
2.28.1.6.8.7076 OTU 4 seqs
prokMSA_id:4666 Blastochloris viridis str. G8
prokMSA_id:4668 Blastochloris viridis str. B4
prokMSA_id:4692 Blastochloris viridis str. G5
prokMSA_id:4697 Blastochloris viridis str. B9
2.28.1.6.8.7074 OTU 3 seqs
prokMSA_id:4715 unnamed organism. AF007948
prokMSA_id:35018 Alpha 34619 
prokMSA_id:36327 Alpha F0723 
2.28.1.6.8.7101 OTU 2 seqs
prokMSA_id:4695 Blastochloris viridis str. G12
prokMSA_id:4696 Blastochloris viridis str. B5
2.28.1.6.8.7141 OTU 2 seqs
prokMSA_id:4719 Rhodoplanes Wai3R3 str. Wai3R3
prokMSA_id:70971 Rhodoplanes elegans 
2.28.1.6.8.7144 OTU 2 seqs
prokMSA_id:4716 clone M29
prokMSA_id:4717 clone P57
2.28.1.6.8.7194 OTU 1 seq
prokMSA_id:58086 Ellin362 
2.28.1.6.8.7213 OTU 2 seqs
prokMSA_id:40238 clone Tc42 
prokMSA_id:48489 clone Tc35 
2.28.1.6.8.7228 OTU 2 seqs
prokMSA_id:21706 KF-JG30-B3 
prokMSA_id:63277 clone FW96 
2.28.1.6.8.7244 OTU 1 seq
prokMSA_id:4714 clone WCHB1-55
2.28.1.6.8.7261 OTU 1 seq
prokMSA_id:4718 Rhodoplanes Tok2tar1 str. Tok2tar1
2.28.1.6.8.7264 OTU 1 seq
prokMSA_id:66234 Bosea thiooxidans isolate TJ1 
2.28.1.6.8.7275 OTU 1 seq
prokMSA_id:83531 clone CCU18 
2.28.1.6.8.7283 OTU 1 seq
prokMSA_id:4722 Methylorhabdus multivorans str. DM13 VKM B-2030
2.28.1.6.8.7295 OTU 1 seq
prokMSA_id:64597 alpha clone 1557 
2.28.1.6.8.7337 OTU 11 seqs
prokMSA_id:23394 soil clone S139 AY037644
prokMSA_id:30114 earthworm cast clone C156 AY037758
prokMSA_id:31892 earthworm cast clone C062 AY037712
prokMSA_id:36311 clone Tc99 AF445156
prokMSA_id:41548 clone Tc91 AF445149
prokMSA_id:42429 clone Tc38 AF445104
prokMSA_id:44875 Rhizosphere soil clone RSC-II-17 
prokMSA_id:46714 clone Tc72 AF445132
prokMSA_id:48161 clone Tc52 AF445116
prokMSA_id:85332 soil clone Tc132-50 AY242678
prokMSA_id:85348 soil clone Tc129-17 AY242673
2.28.1.6.8.7339 OTU 1 seq
prokMSA_id:79109 clone csbio160171 
2.28.1.6.8.7352 OTU 1 seq
prokMSA_id:4665 Blastochloris viridis str. G7
2.28.1.6.8.7368 OTU 1 seq
prokMSA_id:64286 Alpha LMG 20591 
2.28.1.6.8.7370 OTU 1 seq
prokMSA_id:85551 clone CCM24a 
2.28.1.6.8.7392 OTU 1 seq
prokMSA_id:76573 alpha clone JG36-TzT-182
2.28.1.6.8.7484 OTU 1 seq
prokMSA_id:5402 clone 49524 
2.28.1.6.8.7483 OTU 4 seqs
prokMSA_id:4658 Xanthobacter autotrophicus str. JW33. X94203
prokMSA_id:24033 Alpha S-C2-18A AB074717
prokMSA_id:26549 Alpha S-C1-18B2 AB074716
prokMSA_id:62748 Xanthobacter viscosus 
2.28.1.6.8.7488 OTU 1 seq
prokMSA_id:32098 clone Tc78 
2.28.1.6.8.7489 OTU 1 seq
prokMSA_id:75897 alpha clone JG34-KF-361
2.28.1.6.8.7495 OTU 1 seq
prokMSA_id:4680 Rhodoplanes roseus str. 941
2.28.1.6.8.7544 OTU 1 seq
prokMSA_id:64872 clone 92
2.28.1.6.8.7564 OTU 1 seq
prokMSA_id:4648 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 
2.28.1.6.8.7620 OTU 1 seq
prokMSA_id:39556 GR-WP33-3 clone GR-WP33-3
2.28.1.6.9 MSI.TRICHOSPORIUM_SUBGROUP 67 seqs
2.28.1.6.9.6625 OTU 1 seq
prokMSA_id:4735 Methylosinus sp. str. LAC
2.28.1.6.9.6722 OTU 1 seq
prokMSA_id:30920 clone Tc66 
2.28.1.6.9.6892 OTU 1 seq
prokMSA_id:32800 PHOS-HE47 
2.28.1.6.9.6898 OTU 1 seq
prokMSA_id:65465 clone a13113 
2.28.1.6.9.7103 OTU 1 seq
prokMSA_id:37026 soil clone 1152-2 
2.28.1.6.9.7173 OTU 1 seq
prokMSA_id:33878 clone Tc49 
2.28.1.6.9.7193 OTU 1 seq
prokMSA_id:23345 MHP17 
2.28.1.6.9.7219 OTU 1 seq
prokMSA_id:4737 Methylosinus sporium str. provided by Y.Trotsenko
2.28.1.6.9.7318 OTU 1 seq
prokMSA_id:41087 clone HTD9 
2.28.1.6.9.7399 OTU 1 seq
prokMSA_id:20378 sludge A20 
2.28.1.6.9.7410 OTU 2 seqs
prokMSA_id:29896 alpha clone Ebpr11 
prokMSA_id:44677 alpha clone Ebpr9 
2.28.1.6.9.7640 OTU 55 seqs
prokMSA_id:4736 str. B-3060
prokMSA_id:4738 Methylocystis parvus
prokMSA_id:4739 Methylosinus trichosporium
prokMSA_id:4740 Methylosinus PW1 str. PW1
prokMSA_id:4741 Methylocystis LW5 str. LW5
prokMSA_id:4742 Methylosinus LW3 str. LW3
prokMSA_id:4747 str. AML-A3
prokMSA_id:4748 str. AML-A6
prokMSA_id:4749 str. LR1
prokMSA_id:4752 Methylocystis M str. M
prokMSA_id:4753 Methylocystis WI 14 str. WI 14
prokMSA_id:28443 Methylocystis sp. SV97 strain SV97
prokMSA_id:30352 from anoxic bulk soil clone BSV53
prokMSA_id:32547 Methylosinus pucelana 
prokMSA_id:35967 Methylosinus sp. LW8 
prokMSA_id:36920 clone LO13.7 
prokMSA_id:42706 Methylosinus sporium 
prokMSA_id:44508 Methylosinus trichosporium 
prokMSA_id:52070 Methylosinus sp. LW4 
prokMSA_id:55280 Methylocystis sp. SC2 strain SC2
prokMSA_id:55601 Methylocystis sp. 42/22 strain 42/22
prokMSA_id:55990 Methylocystis sp. WRS complete 
prokMSA_id:56124 Methylocystis sp. M42/1 strain M42/1
prokMSA_id:56187 Methylocystis sp. H9a strain H9a
prokMSA_id:56666 Methylosinus trichosporium strain 1
prokMSA_id:58407 Alpha methylotroph Hohenstaufen 
prokMSA_id:58408 Methylocystis sp. 18-2 
prokMSA_id:58411 Methylosinus sp. NCIMB 13214 
prokMSA_id:61187 clone UP4 
prokMSA_id:61188 clone UP6 
prokMSA_id:61191 clone UP5 
prokMSA_id:64196 Methylosinus sp. D15a strain D15a
prokMSA_id:64198 Methylocystis sp. 82 strain 82
prokMSA_id:64199 Methylocystis sp. KS33 strain KS33
prokMSA_id:64200 Methylocystis sp. KS31 strain KS31
prokMSA_id:64201 Methylocystis sp. M31 strain M31
prokMSA_id:64202 Methylocystis sp. F10V2a strain F10V2a
prokMSA_id:64203 Methylocystis echinoides strain 2
prokMSA_id:64204 Methylocystis sp. 39 strain 39
prokMSA_id:64206 Methylocystis sp. KS7 strain KS7
prokMSA_id:64207 Methylocystis sp. KS3 strain KS3
prokMSA_id:64208 Methylosinus trichosporium strain KS24b
prokMSA_id:64209 Methylocystis sp. KS12 strain KS12
prokMSA_id:64210 Methylocystis sp. KS8a strain KS8a
prokMSA_id:64211 Methylosinus trichosporium strain O19/1
prokMSA_id:64217 Methylocystis sp. Pi5/4 strain Pi5/4
prokMSA_id:64218 Methylocystis sp. 50/42a strain 50/42a
prokMSA_id:64219 Methylosinus trichosporium strain 33/1
prokMSA_id:64224 Methylocystis sp. 51 strain 51
prokMSA_id:64227 Methylocystis sp. IMET 10486 strain IMET 10486
prokMSA_id:64230 Methylocystis sp. 495/4 strain 495/4
prokMSA_id:64234 Methylosinus trichosporium strain KS21
prokMSA_id:70162 Methylosinus sporium strain 9/1
prokMSA_id:70519 Methylocystis sp. Ch22 strain Ch22
prokMSA_id:74224 Methylosinus trichosporium strain SC10
2.28.1.6.10 BEI.INDICA_SUBGROUP 22 seqs
2.28.1.6.10.6645 OTU 1 seq
prokMSA_id:32333 alpha UP3 
2.28.1.6.10.6719 OTU 1 seq
prokMSA_id:4760 Afipia genosp. 6 str. G8665
2.28.1.6.10.6721 OTU 1 seq
prokMSA_id:4761 unnamed organism
2.28.1.6.10.6731 OTU 1 seq
prokMSA_id:4764 clone DA067
2.28.1.6.10.6734 OTU 1 seq
prokMSA_id:4765 str. TM19
2.28.1.6.10.6762 OTU 2 seqs
prokMSA_id:36961 alpha UP1 
prokMSA_id:61190 clone UP8 
2.28.1.6.10.6767 OTU 1 seq
prokMSA_id:31950 isolate BUG-236
2.28.1.6.10.6946 OTU 1 seq
prokMSA_id:85004 clone CCM12a 
2.28.1.6.10.7000 OTU 1 seq
prokMSA_id:19989 FukuS110 
2.28.1.6.10.7117 OTU 1 seq
prokMSA_id:51286 alpha UP2 
2.28.1.6.10.7147 OTU 1 seq
prokMSA_id:78811 alpha clone JG30a-KF-59
2.28.1.6.10.7153 OTU 5 seqs
prokMSA_id:24886 clone RB7C4 
prokMSA_id:27469 clone RB7C5 
prokMSA_id:64189 Methylocella sp. BL2 
prokMSA_id:78050 alpha clone:Rs-K73 AB089096
prokMSA_id:83530 Methylocella tundrae strain T4
2.28.1.6.10.7199 OTU 1 seq
prokMSA_id:76517 alpha clone Gitt-KF-194
2.28.1.6.10.7302 OTU 1 seq
prokMSA_id:51161 sludge A28b 
2.28.1.6.10.7326 OTU 1 seq
prokMSA_id:45223 clone TAF-A108 
2.28.1.6.10.7419 OTU 1 seq
prokMSA_id:58103 Ellin340 
2.28.1.6.10.7591 OTU 1 seq
prokMSA_id:80741 alpha clone W2b-8B 
2.28.1.6.11 METHYLOBACTERIA_SUBGROUP 85 seqs
2.28.1.6.11.1 MLB.EXTORQUENS_SUBGROUP 20 seqs
2.28.1.6.11.1.6782 OTU 1 seq
prokMSA_id:4772 unnamed organism
2.28.1.6.11.1.7060 OTU 1 seq
prokMSA_id:76105 alpha clone Sh765B-TzT-3
2.28.1.6.11.1.7585 OTU 18 seqs
prokMSA_id:4771 Methylobacterium extorquens ATCC 43645 . NONE
prokMSA_id:4776 Methylobacterium zatmanii str. MA1/5 JCM 2819
prokMSA_id:4780 Methylobacterium extorquens NCIMB 9399 . L20847
prokMSA_id:4782 Methylobacterium extorquens JCM 2802
prokMSA_id:4783 Methylobacterium sp. str. GK101
prokMSA_id:4786 Methylobacterium rhodesianum JCM 2810
prokMSA_id:4787 Methylobacterium sp. str. GK118
prokMSA_id:4788 Methylobacterium APW
prokMSA_id:32399 Methylobacterium sp. G296-15 
prokMSA_id:42869 Methylobacterium sp. TD4 
prokMSA_id:43152 Methylobacterium extorquens 
prokMSA_id:48113 Methylobacterium sp. P1 AF148859
prokMSA_id:52319 Methylobacterium sp. CM4 
prokMSA_id:55455 Methylobacterium extorquens 
prokMSA_id:62973 Methylobacterium sp. clone 84-14 rrn 
prokMSA_id:68822 Methylobacterium extorquens ; tRNA-Ile and tRNA-Ala genes co
prokMSA_id:84672 Methylobacterium sp. BJ001 and -23S intergenic spacer comple
prokMSA_id:86781 Methylobacterium podarium AF514774
2.28.1.6.11.2 MLB.RADIOTOLERANS_SUBGROUP 30 seqs
2.28.1.6.11.2.6744 OTU 1 seq
prokMSA_id:72323 Methylobacterium sp. strain LMG-19419
2.28.1.6.11.2.7004 OTU 2 seqs
prokMSA_id:58322 Iron-oxidizing acidophile Y005 
prokMSA_id:81189 Methylobacterium fujisawaense 
2.28.1.6.11.2.7202 OTU 1 seq
prokMSA_id:49806 Methylobacterium nodulans strain ORS1924 
2.28.1.6.11.2.7269 OTU 1 seq
prokMSA_id:4791 Blastobacter sp. str. BF10
2.28.1.6.11.2.7271 OTU 1 seq
prokMSA_id:4794 str. BD5-10
2.28.1.6.11.2.7290 OTU 1 seq
prokMSA_id:4797 Blastobacter sp. str. PC30.44
2.28.1.6.11.2.7581 OTU 1 seq
prokMSA_id:4803 str. MBIC3401
2.28.1.6.11.2.7605 OTU 1 seq
prokMSA_id:68458 Symbiont cf. Methylobacterium of Acromyrmex octospinosus 
2.28.1.6.11.2.7611 OTU 20 seqs
prokMSA_id:4790 Methylobacterium sp. str. F18
prokMSA_id:4795 Methylobacterium sp. str. F15
prokMSA_id:4796 Methylobacterium sp. str. F42
prokMSA_id:4798 Methylobacterium sp. str. F05
prokMSA_id:4799 Methylobacterium fujisawaense DSM 5686
prokMSA_id:4800 Methylobacterium radiotolerans JCM 2831
prokMSA_id:4801 Methylobacterium sp. str. F73
prokMSA_id:4806 Methylobacterium mesophilicum JCM 2829
prokMSA_id:16540 clone GL182.19 AY038616
prokMSA_id:19442 Alpha S-Su1-8E AB074749
prokMSA_id:20530 Methylobacterium sp. A1 
prokMSA_id:24700 Alpha D-C3-20A AB074668
prokMSA_id:25318 Methylobacterium sp. NI4 
prokMSA_id:26317 Methylobacterium mesophilicum strain JCM 2829
prokMSA_id:29815 Methylobacterium sp. G296-5 
prokMSA_id:32868 Methylobacterium sp. PC30.38 strain PC30.38 X89904
prokMSA_id:35133 WD2113 clone WD2113
prokMSA_id:77609 alpha clone:APe2_3
prokMSA_id:78782 Phenanthrene-degrading 35 
prokMSA_id:79023 Phenanthrene-degrading M10 
2.28.1.6.11.2.7659 OTU 1 seq
prokMSA_id:60394 Rhizobiaceae LA52 
2.28.1.6.11.3 MLB.ORGANOPHILUM_SUBGROUP 2 seqs
2.28.1.6.11.3.7595 OTU 1 seq
prokMSA_id:4808 Methylobacterium MBIC4305 str. MBIC4305
2.28.1.6.11.3.7593 OTU 1 seq
prokMSA_id:4807 Methylobacterium organophilum str. XX JCM 2833
2.28.1.6.11.4 BO.THIOOXIDANS_SUBGROUP 33 seqs
2.28.1.6.11.4.7143 OTU 32 seqs
prokMSA_id:4810 Bosea thiooxidans str. BI-42 DSM 9653 . X81044
prokMSA_id:4811 Afipia genosp. 7 str. G8643. U87773
prokMSA_id:4812 Afipia genosp. 8 str. G8569. U87774
prokMSA_id:4813 Afipia genosp. 9 str. G8994. U87775
prokMSA_id:4814 Afipia genosp. 9 str. G8995
prokMSA_id:4815 Afipia genosp. 9 str. G8989. U87777
prokMSA_id:4816 Afipia genosp. 9 str. G8998
prokMSA_id:4817 Afipia genosp. 9 str. G8990
prokMSA_id:4820 clone SJA-105
prokMSA_id:4821 str. 5Z2111
prokMSA_id:4822 Bosea thiooxidans str. BI-42 DSM 9653 . AJ250796
prokMSA_id:4823 Bosea thiooxidans str. RpPl5-VS. AJ250797
prokMSA_id:4824 Bosea thiooxidans str. RpPl3-VS. AJ250798
prokMSA_id:4825 Bosea thiooxidans str. MGV6-VS. AJ250799
prokMSA_id:4826 Bosea thiooxidans str. KB13-VS
prokMSA_id:17030 Bosea sp. MN 51a isolate MN 51a AJ313022
prokMSA_id:24179 Alpha 34635 
prokMSA_id:25399 Alpha 34620 
prokMSA_id:27298 Alpha 34649 
prokMSA_id:27741 Afipia sp. LMG 19832 strain LMG 19832 AJ300771
prokMSA_id:29196 Alpha 34614 
prokMSA_id:47211 Alpha 63287 
prokMSA_id:47963 Alpha 63286 
prokMSA_id:48650 Bosea mexicana 
prokMSA_id:56322 Bosea thiooxidans strain BI-42 
prokMSA_id:61828 alpha clone CLi38 
prokMSA_id:66285 Afipia sp. LCSAOTU26 
prokMSA_id:66622 alpha clone 8-2 AY094498
prokMSA_id:68725 Glacial ice M3C1.8K-TD7 
prokMSA_id:69677 Bosea sp. 7F 
prokMSA_id:76587 MF_clone_40 
prokMSA_id:77260 MF_clone_121 
2.28.1.6.11.4.7655 OTU 1 seq
prokMSA_id:4819 clone SJA-9
2.28.1.6.12 BRADYRHIZOBIUM_SUBGROUP 227 seqs
2.28.1.6.12.1 AFIPIA.FELIS_SUBGROUP 7 seqs
2.28.1.6.12.1.6824 OTU 1 seq
prokMSA_id:33444 alpha GT20-1a 
2.28.1.6.12.1.7029 OTU 1 seq
prokMSA_id:16718 alpha clone BIfci45
2.28.1.6.12.1.7403 OTU 5 seqs
prokMSA_id:4829 Afipia felis
prokMSA_id:4830 DSM 1083
prokMSA_id:4831 Afipia felis str. AfTA-1 CDC G9192
prokMSA_id:68815 Afipia felis ; tRNA-Ile and tRNA-Ala genes complete ; and 23
prokMSA_id:77914 Oligotropha carboxidovorans complete strain: S23
2.28.1.6.12.2 AFP.CLEVELANDENSIS 1 seq
2.28.1.6.12.2.7078 OTU 1 seq
prokMSA_id:4832 Afipia clevelandensis
2.28.1.6.12.4 NTB.WINOGRADSKYI_SUBGROUP 9 seqs
2.28.1.6.12.4.6927 OTU 7 seqs
prokMSA_id:4834 Nitrobacter winogradskyi ATCC 25381
prokMSA_id:4840 Nitrobacter winogradskyi str. W
prokMSA_id:4843 Nitrobacter hamburgensis str. X14
prokMSA_id:4844 Nitrobacter hamburgensis str. Nb14? or X14
prokMSA_id:17737 Nitrobacter winogradskyi 
prokMSA_id:25095 Nitrobacter sp. PJN1 
prokMSA_id:47296 Nitrobacter sp. NRB5220 
2.28.1.6.12.4.7006 OTU 1 seq
prokMSA_id:29702 Nitrobacter sp. KB215 
2.28.1.6.12.4.7438 OTU 1 seq
prokMSA_id:56503 Nitrobacter sp. KB212 
2.28.1.6.12.5 RPS.PALUSTRIS_SUBGROUP 28 seqs
2.28.1.6.12.5.6768 OTU 1 seq
prokMSA_id:4850 Rhodopseudomonas palustris str. GH
2.28.1.6.12.5.6799 OTU 1 seq
prokMSA_id:4865 Rhodopseudomonas palustris str. ATH 2.1.6 ATCC 17001
2.28.1.6.12.5.7316 OTU 12 seqs
prokMSA_id:4851 Rhodopseudomonas palustris str. ATH 2.1.6 ATCC 17001
prokMSA_id:4852 Afipia genosp. 5 str. F8014
prokMSA_id:4859 Rhodopseudomonas palustris
prokMSA_id:4863 Rhodopseudomonas palustris str. No.7
prokMSA_id:4864 Rhodopseudomonas palustris str. ATH 2.1.6 ATCC 17001
prokMSA_id:19194 Rhodopseudomonas palustris strain KD1 
prokMSA_id:23531 Rhodopseudomonas palustris strain BIS10 
prokMSA_id:28497 Rhodopseudomonas sp. B29 
prokMSA_id:37581 Rhodopseudomonas palustris strain BIS6 
prokMSA_id:42172 Rhodopseudomonas palustris strain DCP3 
prokMSA_id:62340 Rhodopseudomonas palustris isolate:VA2-2
prokMSA_id:68785 Rhodopseudomonas palustris strain Wai1val1 
2.28.1.6.12.5.7333 OTU 13 seqs
prokMSA_id:4855 Rhodopseudomonas v-1 str. v-1
prokMSA_id:4858 Rhodopseudomonas g-c str. g-c
prokMSA_id:4867 Afipia genosp. 4 str. G7812
prokMSA_id:4913 Afipia genosp. 4 str. G6050
prokMSA_id:4914 Afipia genosp. 4 str. G3644
prokMSA_id:21255 Rhodopseudomonas palustris 
prokMSA_id:62333 Rhodopseudomonas sp. HMD89 
prokMSA_id:62337 Rhodopseudomonas sp. HMD88 
prokMSA_id:62406 alpha clone FTLM116 
prokMSA_id:67647 Rhodopseudomonas palustris 
prokMSA_id:68786 Rhodopseudomonas palustris strain Wai1S1 
prokMSA_id:73043 Rhodopseudomonas palustris isolate:99D
prokMSA_id:75450 clone DCE47 
2.28.1.6.12.5.7557 OTU 1 seq
prokMSA_id:47708 alpha clone BIvi26
2.28.1.6.12.6 ENVIRONMENTAL_CLONE_JAP850_SUBGROUP 1 seq
2.28.1.6.12.6.7631 OTU 1 seq
prokMSA_id:4878 clone JAP850
2.28.1.6.12.8 BDR.LUPINI_SUBGROUP 72 seqs
2.28.1.6.12.8.6941 OTU 19 seqs
prokMSA_id:4866 Rhodopseudomonas palustris str. ATH 2.1.6 ATCC 17001
prokMSA_id:4983 Bradyrhizobium genosp. F str. BDV5029
prokMSA_id:23765 Bradyrhizobium japonicum strain DASA02010 
prokMSA_id:27428 Bradyrhizobium japonicum strain DASA37011 
prokMSA_id:28205 Nitrobacter winogradskyi AF363288
prokMSA_id:33185 Bradyrhizobium japonicum strain DASA38025 
prokMSA_id:35097 Alpha D-C2-17A AB074667
prokMSA_id:40221 rape rhizosphere wr0024 
prokMSA_id:41012 Arsenic resistant soil 7-02 AF308874
prokMSA_id:45495 Bradyrhizobium japonicum strain DASA03183 
prokMSA_id:48037 Bradyrhizobium japonicum strain DASA01059 AF417550
prokMSA_id:49277 Bradyrhizobium japonicum strain THA7 AF417545
prokMSA_id:54256 Bradyrhizobium japonicum strain DASA02007 
prokMSA_id:62972 Bradyrhizobium sp. clone 81-24 rrn AF526939
prokMSA_id:62985 Bradyrhizobium sp. clone T8-12 rrn 
prokMSA_id:63273 clone FW94 AF523947
prokMSA_id:63890 Rhodopseudomonas rhenobacensis complete 
prokMSA_id:73880 Nitrobacter sp
prokMSA_id:87593 Bradyrhizobium sp. Kus-6 AF510593
2.28.1.6.12.8.7077 OTU 1 seq
prokMSA_id:39678 Alpha 34626 
2.28.1.6.12.8.7087 OTU 31 seqs
prokMSA_id:4880 Bradyrhizobium lupini
prokMSA_id:4931 Bradyrhizobium genosp. H str. BDV5329
prokMSA_id:4933 Bradyrhizobium ApB16 str. ApB16
prokMSA_id:18027 Bradyrhizobium japonicum strain MSDJ 5697 
prokMSA_id:19473 Bradyrhizobium japonicum strain MSDJ 5584 
prokMSA_id:19767 Bradyrhizobium japonicum strain MSDJ 5317 
prokMSA_id:20855 Bradyrhizobium liaoningense strain LMG 18230
prokMSA_id:20975 Bradyrhizobium japonicum strain MSDJ 5582 
prokMSA_id:21490 Bradyrhizobium japonicum strain:NA6545
prokMSA_id:21631 Bradyrhizobium sp. MSDJ 5493 
prokMSA_id:23776 Bradyrhizobium japonicum strain:USDA135
prokMSA_id:26267 Bradyrhizobium liaoningense 
prokMSA_id:29213 Bradyrhizobium japonicum strain MSDJ 5605 
prokMSA_id:30965 Bradyrhizobium japonicum strain MSDJ 5569 
prokMSA_id:31104 Bradyrhizobium japonicum strain MSDJ 5327 
prokMSA_id:34952 Bradyrhizobium liaoningense strain 2043 
prokMSA_id:35319 Bradyrhizobium japonicum strain MSDJ 5344 
prokMSA_id:36732 Bradyrhizobium japonicum strain SEMIA 5079 complete 
prokMSA_id:36971 Bradyrhizobium japonicum PRY1 complete 
prokMSA_id:37117 Bradyrhizobium japonicum strain MSDJ 5718 
prokMSA_id:37915 Bradyrhizobium japonicum strain USDA 123 
prokMSA_id:42291 Bradyrhizobium japonicum strain MSDJ 5563 
prokMSA_id:47540 Bradyrhizobium sp. Ppau3-25 
prokMSA_id:48441 Bradyrhizobium liaoningense strain 2281 
prokMSA_id:51333 Bradyrhizobium sp. MSDJ 5495 
prokMSA_id:61020 Bradyrhizobium japonicum isolate HA1 
prokMSA_id:63555 Bradyrhizobium japonicum strain SEMIA 5085 complete 
prokMSA_id:69144 Bradyrhizobium japonicum strain USDA 123 ; tRNA-Ile and tRNA
prokMSA_id:69704 Bradyrhizobium japonicum strain USDA 135 ; tRNA-Ile and tRNA
prokMSA_id:70036 Bradyrhizobium liaoningense strain 2281 USDA 3622 ; tRNA-Ile
prokMSA_id:70284 Bradyrhizobium japonicum strain USDA 127 ; tRNA-Ile and tRNA
2.28.1.6.12.8.7196 OTU 8 seqs
prokMSA_id:4920 clone OCS126
prokMSA_id:30120 isolate HRV39 Z88591
prokMSA_id:32937 alpha NAC11-16 
prokMSA_id:41962 marine ZD0209 
prokMSA_id:68992 alpha MB11B03 ; tRNA-Ile complete ; and 23S 
prokMSA_id:72433 isolate HRV6 Z88583
prokMSA_id:79431 clone ZA3446c 
prokMSA_id:93117 alpha clone PLY-P1-97 AY354816
2.28.1.6.12.8.7398 OTU 11 seqs
prokMSA_id:4921 Bradyrhizobium lupini str. KM50 90 USDA 3514
prokMSA_id:23425 Bradyrhizobium sp. MSDJ 2024 
prokMSA_id:24854 Bradyrhizobium sp. strain Da3-1 
prokMSA_id:25125 Bradyrhizobium sp. MSDJ 5728 
prokMSA_id:37374 Bradyrhizobium sp. MSDJ 5494 
prokMSA_id:44859 Bradyrhizobium sp. MSDJ 2027 
prokMSA_id:46384 Bradyrhizobium sp. MSDJ 5729 
prokMSA_id:50671 Bradyrhizobium sp. WM9 
prokMSA_id:69075 Bradyrhizobium japonicum strain USDA 4 ; tRNA-Ile and tRNA-A
prokMSA_id:69453 Bradyrhizobium japonicum strain USDA 38 ; tRNA-Ile and tRNA-
prokMSA_id:81286 Bradyrhizobium sp. ORS199 
2.28.1.6.12.8.7450 OTU 1 seq
prokMSA_id:24441 alpha clone BIaii16
2.28.1.6.12.8.7502 OTU 1 seq
prokMSA_id:32002 Bradyrhizobium japonicum strain DASA12007 
2.28.1.6.12.9 BDR.JAPONICUS_SUBGROUP 2 seqs
2.28.1.6.12.9.6942 OTU 1 seq
prokMSA_id:45827 Bradyrhizobium japonicum strain DASA37026 
2.28.1.6.12.9.7154 OTU 1 seq
prokMSA_id:4940 str. TM28
2.28.1.6.12.10 BDR.ELKANII_SUBGROUP 51 seqs
2.28.1.6.12.10.6636 OTU 21 seqs
prokMSA_id:4943 Bradyrhizobium sp. LMG 9520
prokMSA_id:4945 Bradyrhizobium sp. LMG 9966
prokMSA_id:4946 Bradyrhizobium elkanii
prokMSA_id:4947 Bradyrhizobium sp. LMG 9980
prokMSA_id:4961 Bradyrhizobium sp. LMG 10689
prokMSA_id:16523 Bradyrhizobium elkanii strain USDA 94 
prokMSA_id:31992 Bradyrhizobium sp. 5F3 
prokMSA_id:33324 Bradyrhizobium sp. bfs1b 
prokMSA_id:36853 Alpha 12A 
prokMSA_id:39071 Bradyrhizobium elkanii strain SEMIA 587 complete 
prokMSA_id:48285 Alpha RD5-C2 
prokMSA_id:55820 Bradyrhizobium elkanii strain USDA 121 ; tRNA-Ile and tRNA-A
prokMSA_id:56127 Bradyrhizobium elkanii strain USDA 23 ; tRNA-Ile and tRNA-Al
prokMSA_id:56364 Bradyrhizobium sp. ORS 3262 
prokMSA_id:64297 Bradyrhizobium sp. ORS 3260 
prokMSA_id:68819 Bradyrhizobium elkanii strain USDA 90 ; tRNA-Ile and tRNA-Al
prokMSA_id:68820 Bradyrhizobium elkanii strain USDA 86 ; tRNA-Ile and tRNA-Al
prokMSA_id:70012 Bradyrhizobium elkanii ; tRNA-Ile and tRNA-Ala genes complet
prokMSA_id:70194 Bradyrhizobium elkanii strain USDA 130 ; tRNA-Ile and tRNA-A
prokMSA_id:71952 Bradyrhizobium elkanii strain USDA 31 ; tRNA-Ile and tRNA-Al
prokMSA_id:81433 Bradyrhizobium sp. ORS204 
2.28.1.6.12.10.6867 OTU 1 seq
prokMSA_id:65458 clone a13131 
2.28.1.6.12.10.6887 OTU 6 seqs
prokMSA_id:4949 str. HW13
prokMSA_id:4950 str. HWK12
prokMSA_id:21176 Bradyrhizobium elkanii strain DASA37005 
prokMSA_id:35279 mRNA clone sipK8
prokMSA_id:49293 Bradyrhizobium YB2 
prokMSA_id:55735 Bradyrhizobium elkanii strain USDA 46 ; tRNA-Ile and tRNA-Al
2.28.1.6.12.10.7044 OTU 6 seqs
prokMSA_id:4962 Afipia genosp. 1 str. G6457
prokMSA_id:4963 Afipia genosp. 1 str. F872
prokMSA_id:4964 Afipia genosp. 2 str. G8965
prokMSA_id:4965 Afipia genosp. 2 str. G4438
prokMSA_id:5045 Bradyrhizobium 'SH 283012' str. SH 283012
prokMSA_id:57890 Bradyrhizobium sp. SH28301 AY141982
2.28.1.6.12.10.7096 OTU 1 seq
prokMSA_id:49111 earthworm cast clone C013 
2.28.1.6.12.10.7126 OTU 1 seq
prokMSA_id:75549 alpha clone S15A-MN96
2.28.1.6.12.10.7328 OTU 1 seq
prokMSA_id:45478 Bradyrhizobium sp. 2FB3 
2.28.1.6.12.10.7390 OTU 5 seqs
prokMSA_id:4967 Afipia broomeae str. F186
prokMSA_id:4971 Afipia broomeae str. G5958
prokMSA_id:4972 Afipia genosp. 10 str. G8996
prokMSA_id:41002 Alpha 34632 
prokMSA_id:78588 Phenanthrene-degrading L51B 
2.28.1.6.12.10.7477 OTU 7 seqs
prokMSA_id:4977 str. BTH
prokMSA_id:4978 str. RCO. D89030
prokMSA_id:41143 rape rhizosphere wr0005 
prokMSA_id:42229 rape rhizosphere wr0004 
prokMSA_id:55508 Bradyrhizobium sp. DASA 35082 
prokMSA_id:79448 clone ZA2523c 
prokMSA_id:94147 alpha clone JG36-GS-25 AJ582030
2.28.1.6.12.10.7522 OTU 1 seq
prokMSA_id:59954 Bradyrhizobium sp. KKI14 complete 
2.28.1.6.12.10.7629 OTU 1 seq
prokMSA_id:4968 unnamed organism
2.28.1.6.12.12 BDR.LIAONINGENSIS_SUBGROUP 34 seqs
2.28.1.6.12.12.6878 OTU 34 seqs
prokMSA_id:4885 Bradyrhizobium japonicum IAM 12608
prokMSA_id:4929 Bradyrhizobium genosp. G str. BDV5680
prokMSA_id:4980 Bradyrhizobium japonicum
prokMSA_id:4984 str. G14127
prokMSA_id:4997 Bradyrhizobium Pe1-3 str. Pe1-3
prokMSA_id:5001 Bradyrhizobium genosp. C str. BDV5792
prokMSA_id:5002 Bradyrhizobium genosp. K str. BDV5358
prokMSA_id:5004 Bradyrhizobium genosp. D str. BDV5563
prokMSA_id:5005 Bradyrhizobium genosp. I str. BDV5370
prokMSA_id:5006 Bradyrhizobium genosp. J str. BDV5697
prokMSA_id:5008 Bradyrhizobium genosp. O str. BDV5840
prokMSA_id:5010 str. G14003
prokMSA_id:17820 Bradyrhizobium sp. Pplu1-1 
prokMSA_id:20737 Bradyrhizobium japonicum strain DASA24015 
prokMSA_id:22742 Bradyrhizobium japonicum strain:NK2 AB070567
prokMSA_id:27694 Bradyrhizobium japonicum strain USDA 110 
prokMSA_id:32699 Bradyrhizobium japonicum PRY40 complete 
prokMSA_id:37715 Bradyrhizobium japonicum strain MSDJ G49 
prokMSA_id:38637 Bradyrhizobium japonicum strain:NK5
prokMSA_id:39358 Bradyrhizobium sp. MSDJ G17 
prokMSA_id:39826 Bradyrhizobium sp. Pplu1-11 
prokMSA_id:49866 Bradyrhizobium sp. B071 complete 
prokMSA_id:50479 Bradyrhizobium japonicum strain MSDJ 5732 
prokMSA_id:51967 Bradyrhizobium japonicum PRY42 complete 
prokMSA_id:55721 Bradyrhizobium japonicum strain USDA 122 ; tRNA-Ile and tRNA
prokMSA_id:56515 Bradyrhizobium japonicum strain USDA 129 ; tRNA-Ile and tRNA
prokMSA_id:61022 Bradyrhizobium japonicum isolate SD5 
prokMSA_id:62331 Bradyrhizobium sp. MAFF 210318 
prokMSA_id:64291 Bradyrhizobium sp. ORS 3259 
prokMSA_id:68703 Bradyrhizobium sp. LMTR 28 
prokMSA_id:68818 Bradyrhizobium japonicum strain USDA 91 ; tRNA-Ile and tRNA-
prokMSA_id:69495 Bradyrhizobium japonicum strain USDA 62 ; tRNA-Ile and tRNA-
prokMSA_id:77282 Bradyrhizobium japonicum strain SEMIA 586 complete 
prokMSA_id:81409 Bradyrhizobium japonicum 
2.28.1.6.12.14 BLB.DENITRIFICANS_SUBGROUP 22 seqs
2.28.1.6.12.14.6917 OTU 20 seqs
prokMSA_id:4930 Bradyrhizobium genosp. E str. BDV5810
prokMSA_id:4938 Bradyrhizobium japonicum IAM 12608
prokMSA_id:4939 Bradyrhizobium sp. str. 55S
prokMSA_id:4941 Bradyrhizobium sp. str. 129
prokMSA_id:4995 Bradyrhizobium Mm1-3 str. Mm1-3
prokMSA_id:5037 Bradyrhizobium sp. LMG 12187
prokMSA_id:5046 Bradyrhizobium sp. USDA 4362
prokMSA_id:5055 Agromonas oligotrophica JCM 1494
prokMSA_id:22219 WD275 clone WD275
prokMSA_id:27860 clone p-5142-2Wb3 
prokMSA_id:31138 Bradyrhizobium sp. ORS2012 
prokMSA_id:35423 alpha clone SM2H01 
prokMSA_id:37744 Bradyrhizobium sp. ORS2005 
prokMSA_id:43422 Bradyrhizobium sp. STM461 
prokMSA_id:62335 Bradyrhizobium sp. IRBG 228 
prokMSA_id:62336 Bradyrhizobium sp. IRBG 230 
prokMSA_id:62338 Bradyrhizobium sp. IRBG 2 
prokMSA_id:62343 Bradyrhizobium sp. BTAi 1 
prokMSA_id:71353 Bradyrhizobium sp. C7T1 
prokMSA_id:78897 clone JG30-KF-AS89
2.28.1.6.12.14.7348 OTU 1 seq
prokMSA_id:5026 Afipia genosp. 12 str. G8997
2.28.1.6.12.14.7353 OTU 1 seq
prokMSA_id:82205 clone HC65 
2.28.1.6.13 RDB.MARINUM_SUBGROUP 10 seqs
2.28.1.6.13.7152 OTU 1 seq
prokMSA_id:25832 Alpha SOGA29 
2.28.1.6.13.7166 OTU 1 seq
prokMSA_id:72005 clone 4-Org1-14 
2.28.1.6.13.7286 OTU 1 seq
prokMSA_id:50080 clone 4-Org2-27 
2.28.1.6.13.7454 OTU 1 seq
prokMSA_id:5066 Rhodobium orientis str. MB312 JCM 9337
2.28.1.6.13.7455 OTU 1 seq
prokMSA_id:5067 clone RFN49
2.28.1.6.13.7553 OTU 5 seqs
prokMSA_id:5073 Rhodobium marinum DSM 2698 . D30790
prokMSA_id:5074 Rhodopseudomonas sp. str. H. Gest HG/JF ATCC 35601. D30791
prokMSA_id:55679 Rhizobiaceae PH34B 
prokMSA_id:63876 Rhodopseudomonas julia complete 
prokMSA_id:78313 Rhodobium sp. AR2106 
2.28.1.6.15 MSO.HUAKUII_SUBGROUP 30 seqs
2.28.1.6.15.6857 OTU 25 seqs
prokMSA_id:5082 Mesorhizobium loti IAM 13588
prokMSA_id:5083 Mesorhizobium loti LMG 6124
prokMSA_id:5084 Mesorhizobium genosp. T str. BDV5908
prokMSA_id:5085 Mesorhizobium loti str. 261 ICMP 3153
prokMSA_id:5091 Mesorhizobium huakuii IFO 15243
prokMSA_id:5093 Mesorhizobium huakuii IAM 14158
prokMSA_id:5094 Mesorhizobium amorphae ACCC 19665
prokMSA_id:5096 Mesorhizobium loti LMG 6123
prokMSA_id:5097 Mesorhizobium genosp. U str. BDV5514
prokMSA_id:5098 Mesorhizobium 'SH 15003' str. SH 15003
prokMSA_id:5131 str. WSM1497
prokMSA_id:5157 Mesorhizobium mediterraneum str. UPM-Ca36
prokMSA_id:20161 Mesorhizobium sp. Lo7-12 
prokMSA_id:31415 Mesorhizobium chacoense strain PR5
prokMSA_id:35595 rape rhizosphere wr0035 
prokMSA_id:37613 Mesorhizobium sp. USDA 3466 
prokMSA_id:48243 Mesorhizobium sp. ORS1259 strain ORS1259 LMG 15324
prokMSA_id:57886 Mesorhizobium sp. SH267neu 
prokMSA_id:57887 Mesorhizobium sp. SH2851 
prokMSA_id:62975 Rhizobium sp. clone 84-5 rrn 
prokMSA_id:81497 Mesorhizobium ciceri 
prokMSA_id:81730 Mesorhizobium tianshanense 
prokMSA_id:81838 Mesorhizobium mediterraneum strain PECA20 
prokMSA_id:82013 Mesorhizobium sp. ORS207 
prokMSA_id:82201 Mesorhizobium mediterraneum strain PECA03 
2.28.1.6.15.6891 OTU 1 seq
prokMSA_id:5104 Roseospirillum parvum str. 930I
2.28.1.6.15.6899 OTU 1 seq
prokMSA_id:79154 sequences clone: IndB1-38
2.28.1.6.15.6925 OTU 1 seq
prokMSA_id:5088 clone CLEAR-13
2.28.1.6.15.6924 OTU 1 seq
prokMSA_id:5087 clone CLEAR-17
2.28.1.6.15.7323 OTU 1 seq
prokMSA_id:76556 alpha clone JG37-AG-141
2.28.1.6.16 MSO.LOTI_SUBGROUP 118 seqs
2.28.1.6.16.6644 OTU 1 seq
prokMSA_id:24325 alpha MERTZ_0CM_399 
2.28.1.6.16.6665 OTU 1 seq
prokMSA_id:49166 clone 4-Org2-22 
2.28.1.6.16.6673 OTU 2 seqs
prokMSA_id:60695 Phyllobacteriaceae NL21 
prokMSA_id:77579 Mesorhizobium sp. TUT1018 AB098586
2.28.1.6.16.6689 OTU 1 seq
prokMSA_id:27926 clone 4-Org2-4 
2.28.1.6.16.6692 OTU 1 seq
prokMSA_id:24063 Alpha Kaza-27 
2.28.1.6.16.6759 OTU 1 seq
prokMSA_id:68960 clone BIfdi7
2.28.1.6.16.6760 OTU 1 seq
prokMSA_id:39309 alpha MERTZ_2CM_305 
2.28.1.6.16.6810 OTU 1 seq
prokMSA_id:68974 alpha MB13F01 ; tRNA-Ile and tRNA-Ala genes complete ; and 2
2.28.1.6.16.6849 OTU 1 seq
prokMSA_id:50340 alpha rcr_52 
2.28.1.6.16.6854 OTU 1 seq
prokMSA_id:35051 Rhizobium sp. isolate PRLIST04 
2.28.1.6.16.6858 OTU 1 seq
prokMSA_id:25420 alpha NAC1-6 
2.28.1.6.16.6893 OTU 1 seq
prokMSA_id:5108 clone RB25
2.28.1.6.16.6916 OTU 1 seq
prokMSA_id:83392 Antarctic R-9219 strain R-9219
2.28.1.6.16.6957 OTU 1 seq
prokMSA_id:47381 alpha EC-B2 
2.28.1.6.16.6962 OTU 3 seqs
prokMSA_id:5114 Defluvibacter lusatiae DSM 11099
prokMSA_id:37701 Gram negative B4G-1A 
prokMSA_id:54913 Gram negative B5P-1 
2.28.1.6.16.6966 OTU 5 seqs
prokMSA_id:5146 Mesorhizobium tianshanense str. A-1BS USDA 3592
prokMSA_id:22176 Mesorhizobium sp. N33 
prokMSA_id:24617 Mesorhizobium sp. Lc3-2 
prokMSA_id:30025 Mesorhizobium sp. N39 
prokMSA_id:42551 Mesorhizobium sp. N31 
2.28.1.6.16.6986 OTU 2 seqs
prokMSA_id:60654 alpha clone AEGEAN_167 
prokMSA_id:60655 alpha clone AEGEAN_155 
2.28.1.6.16.6996 OTU 1 seq
prokMSA_id:32816 alpha MERTZ_21CM_168 
2.28.1.6.16.7002 OTU 1 seq
prokMSA_id:75002 alpha clone JG34-KF-258
2.28.1.6.16.7009 OTU 2 seqs
prokMSA_id:29660 Alpha RSHD3S10 
prokMSA_id:68663 alpha WIg-12 isolate WIg-12
2.28.1.6.16.7039 OTU 1 seq
prokMSA_id:68662 alpha LIg-6 isolate LIg-6
2.28.1.6.16.7139 OTU 23 seqs
prokMSA_id:5122 Mesorhizobium loti str. 3F6g2 LMG 4284
prokMSA_id:5124 Mesorhizobium genosp. S str. BDV5911
prokMSA_id:5125 Rhizobium CJ2 str. CJ2 S188 USDA 3440
prokMSA_id:5127 Mesorhizobium ciceri str. UPM-Ca7 ATCC 51585
prokMSA_id:5129 str. WSM1284
prokMSA_id:5132 Rhizobium CJ5 str. CJ5 24N USDA 3398
prokMSA_id:5151 Mesorhizobium loti LMG 6125
prokMSA_id:5152 Mesorhizobium HL56 str. HL56
prokMSA_id:5153 Mesorhizobium loti str. R8CS USDA 3467
prokMSA_id:5154 Mesorhizobium loti str. R88b USDA 3462
prokMSA_id:5155 Rhizobium sp. str. CIAM 1414
prokMSA_id:18809 Mesorhizobium sp. Lo9-4 
prokMSA_id:22616 Mesorhizobium sp. Rch-19B isolate Rch-19B AJ417083
prokMSA_id:23862 Mesorhizobium sp. Rch-10B isolate Rch-10B AJ417090
prokMSA_id:27176 rape rhizosphere wr0034 
prokMSA_id:37829 Mesorhizobium sp. N1 
prokMSA_id:39417 Mesorhizobium sp. N20 
prokMSA_id:39581 Mesorhizobium sp. Rch-2B isolate Rch-2B AJ417089
prokMSA_id:41882 Mesorhizobium sp. USDA 4003 
prokMSA_id:45557 Mesorhizobium amorphae strain rob8
prokMSA_id:48799 Mesorhizobium sp. Rch-981 isolate Rch-981 AJ417082
prokMSA_id:66200 Mesorhizobium ciceri strain Rch9816 AJ487829
prokMSA_id:81855 Mesorhizobium ciceri strain C-2/2 
2.28.1.6.16.7168 OTU 2 seqs
prokMSA_id:21643 Agrobacterium kpc17 
prokMSA_id:74699 Unknown marine alpha JP66.1 AY007677
2.28.1.6.16.7169 OTU 1 seq
prokMSA_id:48705 alpha MERTZ_2CM_19 
2.28.1.6.16.7216 OTU 1 seq
prokMSA_id:5135 Ahrensia kielensis IAM 12618
2.28.1.6.16.7220 OTU 1 seq
prokMSA_id:5136 unnamed organism
2.28.1.6.16.7225 OTU 1 seq
prokMSA_id:31507 alpha MERTZ_0CM_243 
2.28.1.6.16.7252 OTU 1 seq
prokMSA_id:60656 alpha clone AEGEAN_108 
2.28.1.6.16.7281 OTU 3 seqs
prokMSA_id:77696 Fulvimarina pelagi strain HTCC2615 
prokMSA_id:77742 Fulvimarina pelagi strain HTCC2619 AY178862
prokMSA_id:77907 Fulvimarina pelagi strain HTCC2506 AY178860
2.28.1.6.16.7312 OTU 1 seq
prokMSA_id:23417 sponge symbiont RSWS1 
2.28.1.6.16.7317 OTU 1 seq
prokMSA_id:5110 clone 49519 
2.28.1.6.16.7332 OTU 1 seq
prokMSA_id:5116 unnamed organism
2.28.1.6.16.7379 OTU 7 seqs
prokMSA_id:5115 Phyllobacterium myrsinacearum IAM 13584
prokMSA_id:5118 Phyllobacterium myrsinacearum str. HM35
prokMSA_id:5120 Nanobacterium sanguineum str. Seralab FBS batch 901045
prokMSA_id:5121 Nanobacterium sp. str. Seralab FBS batch 901045
prokMSA_id:17238 sheep mite Llangefni 18 AF290484
prokMSA_id:21666 sheep mite Llangefni 28 AF290483
prokMSA_id:35523 Rape rhizosphere tsb051 
2.28.1.6.16.7381 OTU 10 seqs
prokMSA_id:5107 Aminobacter aminovorans str. TK3001 DSM 7048
prokMSA_id:5109 str. CC495
prokMSA_id:5140 Chelatobacter heintzii DSM 6450
prokMSA_id:5141 str. IMB-1
prokMSA_id:5144 Aminobacter aganoensis str. TH-3 DSM 7051
prokMSA_id:26552 Methylotrophic loc440 
prokMSA_id:31369 Pseudaminobacter sp. C147 
prokMSA_id:41787 Aminobacter aminovorans 
prokMSA_id:50798 Chelatobacter heintzii 435 
prokMSA_id:52607 Chelatobacter heintzii 
2.28.1.6.16.7393 OTU 1 seq
prokMSA_id:5137 str. JTB260
2.28.1.6.16.7416 OTU 1 seq
prokMSA_id:39227 Gram negative B1G-2 
2.28.1.6.16.7451 OTU 1 seq
prokMSA_id:26047 alpha MERTZ_2CM_84 
2.28.1.6.16.7497 OTU 24 seqs
prokMSA_id:5133 str. Mena 25/4-1 DSM 11455
prokMSA_id:21876 Rhizobium sp. H-4 
prokMSA_id:21931 Sinorhizobium sp. C2 AF227754
prokMSA_id:24111 Elbe River snow isolate Iso26 
prokMSA_id:25630 Rhizobium sp. N1 
prokMSA_id:32754 sludge A7 
prokMSA_id:38122 Mesorhizobium sp. WG 
prokMSA_id:38141 Pseudaminobacter salicylatoxidans strain KTC001
prokMSA_id:49052 clone COX1 
prokMSA_id:52697 Sinorhizobium sp. FJ38 37D AF364852
prokMSA_id:63530 Mesorhizobium sp. PRF86 complete AY117620
prokMSA_id:66931 clone SHA-85
prokMSA_id:69342 Mesorhizobium sp. CCBAU25126 AY147203
prokMSA_id:83113 Mesorhizobium sp. 'Smarlab BioMol-2302657' AY230775
prokMSA_id:87097 Mesorhizobium sp. Leb-4 AF509913
prokMSA_id:87262 Mesorhizobium sp. Loc-1 AF509929
prokMSA_id:87396 Mesorhizobium sp. Rop-1 AF509921
prokMSA_id:87441 Mesorhizobium sp. Rop-4 AF509915
prokMSA_id:87647 Mesorhizobium sp. Amf-4 AF509923
prokMSA_id:87700 Mesorhizobium sp. Leb-1 AF509910
prokMSA_id:87919 Mesorhizobium sp. Amf-5 AF509930
prokMSA_id:90640 Aminobacter sp. COX AY307924
prokMSA_id:91742 Pseudaminobacter sp. mp-1 AY331575
prokMSA_id:93996 alpha clone KCM-B-5 AJ581584
2.28.1.6.16.7512 OTU 2 seqs
prokMSA_id:26653 alpha MERTZ_0CM_232 
prokMSA_id:27640 alpha MERTZ_21CM_100 
2.28.1.6.16.7520 OTU 1 seq
prokMSA_id:5159 clone HstpL48
2.28.1.6.16.7540 OTU 2 seqs
prokMSA_id:21543 alpha MERTZ_2CM_44 
prokMSA_id:35444 alpha clone:TYM--2 
2.28.1.6.16.7543 OTU 1 seq
prokMSA_id:73511 alpha clone BIwii1
2.28.1.6.16.7635 OTU 1 seq
prokMSA_id:44534 isolate HNSS21
2.28.1.6.16.7639 OTU 1 seq
prokMSA_id:79338 sequences clone: IheB2-3
2.28.1.6.17 MSO.TIANSHANENSE 2 seqs
2.28.1.6.17.6876 OTU 1 seq
prokMSA_id:5163 Rhizobium SH2672 str. SH2672
2.28.1.6.17.6874 OTU 1 seq
prokMSA_id:5162 Mesorhizobium tianshanense str. A-1BS DSM 11417
2.28.1.6.18 BRUCELLA_ASSEMBLAGE 66 seqs
2.28.1.6.18.6671 OTU 1 seq
prokMSA_id:23285 24-D degrading NHG3 strain NHG3
2.28.1.6.18.6757 OTU 25 seqs
prokMSA_id:5177 Ochrobactrum anthropi str. isolate 1a. AJ242578
prokMSA_id:5178 Ochrobactrum tritici str. LAIII106. AJ242579
prokMSA_id:5179 Ochrobactrum anthropi LMG 5140
prokMSA_id:5183 Ochrobactrum anthropi LMG 3309. U88441
prokMSA_id:5184 Ochrobactrum anthropi LMG 3310
prokMSA_id:5185 Ochrobactrum anthropi LMG 3329
prokMSA_id:5186 Ochrobactrum anthropi LMG 2320
prokMSA_id:5187 Ochrobactrum sp. str. S1
prokMSA_id:5188 Ochrobactrum tritici str. SCII24. AJ242584
prokMSA_id:22778 Ochrobactrum sp. 3CB4 
prokMSA_id:27684 Ochrobactrum sp. 4FB9 AF229875
prokMSA_id:30119 Ochrobactrum sp. 2FB10 
prokMSA_id:39018 Ochrobactrum sp. 3CB5 
prokMSA_id:45685 Ochrobactrum sp. 4FB14 
prokMSA_id:48732 Ochrobactrum anthropi isolate GH 1568 AJ276036
prokMSA_id:49728 Ochrobactrum sp. isolate FRG11/sat
prokMSA_id:56400 Ochrobactrum tritici isolate TG23 AF508091
prokMSA_id:62899 Ochrobactrum anthropi isolate ADV17 
prokMSA_id:62900 Ochrobactrum anthropi isolate CLF19 AF526523
prokMSA_id:62906 Ochrobactrum anthropi isolate ADV16 AF526520
prokMSA_id:66248 Ochrobactrum tritici isolate TG13 AF508090
prokMSA_id:66250 Ochrobactrum tritici isolate TG161 
prokMSA_id:66251 Ochrobactrum tritici isolate TJ3 
prokMSA_id:74565 Ochrobactrum anthropi isolate ADV15 AF526519
prokMSA_id:91199 Ochrobactrum sp. mp-6 AY331580
2.28.1.6.18.6775 OTU 1 seq
prokMSA_id:5194 str. SS5
2.28.1.6.18.6973 OTU 1 seq
prokMSA_id:5180 Solomonas fluorantheni
2.28.1.6.18.6981 OTU 1 seq
prokMSA_id:76582 Ochrobactrum gallinifaecis 
2.28.1.6.18.6995 OTU 5 seqs
prokMSA_id:5165 Ochrobactrum grignonense str. OgA9a
prokMSA_id:24208 Ochrobactrum sp. 4FB13 
prokMSA_id:31117 Ochrobactrum sp. PR17 complete 
prokMSA_id:70316 Ochrobactrum sp. LMG 20564 
prokMSA_id:70645 Ochrobactrum sp. LMG 20570 
2.28.1.6.18.7051 OTU 8 seqs
prokMSA_id:5171 Mycoplana dimorpha IAM 13154
prokMSA_id:5313 Rhizobium gallicum str. CbS-17. AF008127
prokMSA_id:5330 Rhizobium sp. str. OK-50. D14515
prokMSA_id:5338 Rhizobium leguminosarum IAM 12609 . D12782
prokMSA_id:41578 Rhizobium sp. YAS34 AF239242
prokMSA_id:42970 clone HTD10 
prokMSA_id:47066 Alpha A0721 
prokMSA_id:87993 Rhizobium sp. Trr-9 AF510633
2.28.1.6.18.7116 OTU 16 seqs
prokMSA_id:5169 Brucella melitensis ATCC 23444
prokMSA_id:5170 Brucella melitensis ATCC 25840
prokMSA_id:5175 Brucella melitensis ATCC 23456
prokMSA_id:5189 Brucella melitensis
prokMSA_id:5192 Brucella abortus str. 544
prokMSA_id:5195 Ochrobactrum intermedium str. CNS 2-75 LMG 3301
prokMSA_id:5196 Ochrobactrum intermedium str. 609360 I
prokMSA_id:5197 Ochrobactrum anthropi LMG 3306
prokMSA_id:5198 Ochrobactrum intermedium str. OiC8-6
prokMSA_id:5199 Ochrobactrum intermedium str. OiC8a
prokMSA_id:5204 Brucella melitensis str. 11/19
prokMSA_id:57487 Ochrobactrum intermedium isolate ADV14 
prokMSA_id:59527 Ochrobactrum tritici complete 
prokMSA_id:62908 Ochrobactrum intermedium isolate ADV21 
prokMSA_id:68455 Symbiont cf. Rhizobium of Acromyrmex octospinosus 
prokMSA_id:72183 Ochrobactrum intermedium strain 0102 808
2.28.1.6.18.7146 OTU 1 seq
prokMSA_id:43652 marine 
2.28.1.6.18.7182 OTU 2 seqs
prokMSA_id:58110 Ellin332 
prokMSA_id:58112 Ellin329 
2.28.1.6.18.7310 OTU 1 seq
prokMSA_id:5164 Ochrobactrum sp. IFO 12950
2.28.1.6.18.7360 OTU 2 seqs
prokMSA_id:38231 delta clone SM1G01 
prokMSA_id:43604 delta clone SM1H08 
2.28.1.6.18.7407 OTU 1 seq
prokMSA_id:5190 clone HstpL89
2.28.1.6.18.7443 OTU 1 seq
prokMSA_id:60179 clone TK34
2.28.1.6.19 DG.ZOOGLOEOIDES_SUBGROUP_I 9 seqs
2.28.1.6.19.6753 OTU 1 seq
prokMSA_id:66900 Gram-negative DM 1 isolate DM 1
2.28.1.6.19.6789 OTU 5 seqs
prokMSA_id:5205 Duganella zoogloeoides IAM 12669
prokMSA_id:5207 Duganella zoogloeoides ATCC 19623
prokMSA_id:55816 clone HP1B02 
prokMSA_id:59345 clone HP1B28 
prokMSA_id:66898 Gram-negative DM 2 isolate DM 2
2.28.1.6.19.7221 OTU 1 seq
prokMSA_id:32425 alpha MERTZ_0CM_187 
2.28.1.6.19.7442 OTU 2 seqs
prokMSA_id:5208 Pacific Ocean station 16 100m depth clone
prokMSA_id:71220 sp. amplified from marine plankton 5' end clone NH16-2A
2.28.1.6.20 SRH.FREDII_SUBGROUP 73 seqs
2.28.1.6.20.6641 OTU 1 seq
prokMSA_id:5250 clone HstpL46
2.28.1.6.20.6683 OTU 32 seqs
prokMSA_id:5209 Sinorhizobium terangae LMG 7834
prokMSA_id:5210 Sinorhizobium saheli LMG 7837
prokMSA_id:5217 Sinorhizobium fredii ATCC 35423
prokMSA_id:5231 Sinorhizobium sp. HAMBI 1552
prokMSA_id:5249 Sinorhizobium teranga LMG 6463
prokMSA_id:5255 Sinorhizobium fredii LMG 6217
prokMSA_id:5256 Sinorhizobium MSMC310 str. MSMC310
prokMSA_id:5258 Sinorhizobium sp. HAMBI 1489
prokMSA_id:5260 Sinorhizobium xinjiangensis IAM 14142
prokMSA_id:16617 Sinorhizobium sp. M3A strain M3A AJ298869
prokMSA_id:20311 Sinorhizobium xinjiangensis strain Rx22 AF250353
prokMSA_id:24151 Sinorhizobium sp. 15C-4 AF268072
prokMSA_id:24812 Sinorhizobium sp. Rch-9813 isolate Rch-9813 AJ417088
prokMSA_id:26055 Sinorhizobium morelense complete 
prokMSA_id:32607 Sinorhizobium xinjiangensis strain CCBAU830804 
prokMSA_id:39113 Sinorhizobium xinjiangensis complete 
prokMSA_id:39392 Sinorhizobium sp. ORS1231 strain ORS1231 LMG 15307 AJ295076
prokMSA_id:39445 Sinorhizobium sp. Rch-9868 isolate Rch-9868 AJ417086
prokMSA_id:42233 Sinorhizobium sp. C9 
prokMSA_id:43632 Sinorhizobium sp. RAT902 strain RAT902 R8390 AJ295072
prokMSA_id:51380 Sinorhizobium sp. S005 
prokMSA_id:52806 Sinorhizobium xinjiangensis strain CCBAU110 
prokMSA_id:59132 Rhizobium sp. JH1 
prokMSA_id:59133 Rhizobium sp. AB3 
prokMSA_id:66158 Sinorhizobium sp. CFNEI 156 
prokMSA_id:71225 Sinorhizobium terangae strain ORS1254 LMG 15319
prokMSA_id:74392 Sinorhizobium sp. ORS1236 strain ORS1236 LMG 18076 AJ295077
prokMSA_id:74439 Sinorhizobium sp. ORS1085 strain ORS1085 LMG 15292
prokMSA_id:83138 Sinorhizobium fredii strain USDA205 AY260149
prokMSA_id:83976 Sinorhizobium fredii strain HH103 AY260145
prokMSA_id:85246 Sinorhizobium fredii strain HH003 AY260144
prokMSA_id:85533 Sinorhizobium fredii strain USDA257 AY260150
2.28.1.6.20.6704 OTU 1 seq
prokMSA_id:43818 alpha MERTZ_21CM_29 
2.28.1.6.20.6702 OTU 1 seq
prokMSA_id:49903 alpha clone SM1D09 
2.28.1.6.20.6725 OTU 14 seqs
prokMSA_id:5220 Sinorhizobium meliloti IAM 12611
prokMSA_id:5221 Sinorhizobium meliloti str. 3DOa2 ATCC 9930 . X77121
prokMSA_id:5226 Sinorhizobium meliloti LMG 6133
prokMSA_id:5227 Sinorhizobium MSMC411 str. MSMC411
prokMSA_id:5232 Rhizobium XJ96060 str. XJ96060
prokMSA_id:5233 Rhizobium XJ96408 str. XJ96408
prokMSA_id:5245 Sinorhizobium meliloti IAM 12611
prokMSA_id:27872 Sinorhizobium sp. S007 
prokMSA_id:48966 Sinorhizobium meliloti strain ORS1044 LMG 15285
prokMSA_id:61016 Sinorhizobium meliloti strain WSM1701 
prokMSA_id:64021 Sinorhizobium meliloti 1021 complete chromosome; segment 1/1
prokMSA_id:78604 Rhizobium sp. I6 
prokMSA_id:82107 Sinorhizobium meliloti strain GVPV12 
prokMSA_id:82287 Sinorhizobium meliloti strain LMTR32 
2.28.1.6.20.6861 OTU 1 seq
prokMSA_id:34931 Sinorhizobium indiaensis strain:Ra-3
2.28.1.6.20.6877 OTU 1 seq
prokMSA_id:5257 Rhodobium PENDANT-9
2.28.1.6.20.6972 OTU 7 seqs
prokMSA_id:5218 Ensifer adhaerens ATCC 33499
prokMSA_id:5219 Ensifer adhaerens ATCC 33212
prokMSA_id:27318 Sinorhizobium sp. JL84 
prokMSA_id:30671 Arsenite-oxidizing NT-4 
prokMSA_id:36972 Sinorhizobium sp. S002 AF285962
prokMSA_id:63199 Sinorhizobium adhaerens strain 5D19
prokMSA_id:64288 Ensifer adhaerens 
2.28.1.6.20.7013 OTU 1 seq
prokMSA_id:71591 clone 4-Org1-36 
2.28.1.6.20.7070 OTU 1 seq
prokMSA_id:39851 Elbe River snow isolate Iso39 
2.28.1.6.20.7249 OTU 1 seq
prokMSA_id:72411 Rhizobium sp. isolate PRLISY04 
2.28.1.6.20.7255 OTU 7 seqs
prokMSA_id:5259 str. KCB90. AJ229247
prokMSA_id:16976 oxSCC-1 
prokMSA_id:89447 Alpha pACH81 AY297801
prokMSA_id:89669 Alpha pACH83 AY297803
prokMSA_id:89687 Alpha pACH74 AY297796
prokMSA_id:90170 Alpha pACH82 AY297802
prokMSA_id:90320 Alpha pACH79 AY297800
2.28.1.6.20.7300 OTU 1 seq
prokMSA_id:74157 Unknown marine alpha JP57 
2.28.1.6.20.7463 OTU 2 seqs
prokMSA_id:38715 clone Tc11 
prokMSA_id:41433 clone Tc19 AF445093
2.28.1.6.20.7614 OTU 1 seq
prokMSA_id:54028 alpha MERTZ_21CM_255 
2.28.1.6.20.7613 OTU 1 seq
prokMSA_id:19385 WD2107 clone WD2107
2.28.1.6.21 BLB.CAPSULATUS_SUBGROUP 12 seqs
2.28.1.6.21.6649 OTU 8 seqs
prokMSA_id:5267 Rhizobium giardinii str. H152
prokMSA_id:16351 soil clone 353-2 
prokMSA_id:74374 Sinorhizobium sp. 9702-M4 
prokMSA_id:75607 Rhizobium sp. DCP3 
prokMSA_id:76783 Rhizobium sp. DCP2 
prokMSA_id:78442 Rhizobium sp. M16 
prokMSA_id:86944 Rhizobium sp. Aei-5 AF511492
prokMSA_id:97267 Rhizobium sp. NET30 AY427206
2.28.1.6.21.6729 OTU 1 seq
prokMSA_id:32320 Alpha Kaza-29 
2.28.1.6.21.6919 OTU 1 seq
prokMSA_id:5263 Blastobacter capsulatus ATCC 43294
2.28.1.6.21.6931 OTU 1 seq
prokMSA_id:5266 Blastobacter aggregatus ATCC 43293
2.28.1.6.21.6974 OTU 1 seq
prokMSA_id:46647 Alpha Kaza-35 
2.28.1.6.23 RHB.TROPICI_SUBGROUP 27 seqs
2.28.1.6.23.6770 OTU 24 seqs
prokMSA_id:5273 Agrobacterium rhizogenes LMG 152
prokMSA_id:5275 Rhizobium tropici IAM 14206
prokMSA_id:5276 Rhizobium tropici str. IIA LMG 9517
prokMSA_id:5277 Rhizobium tropici CIAT 899
prokMSA_id:5278 Rhizobium leguminosarum str. C-O5 LMG 9518
prokMSA_id:5280 Rhizobium tropici
prokMSA_id:5281 Agrobacterium rhizogenes IFO 13257
prokMSA_id:5282 Rhizobium tropici IFO 15247 . D11344
prokMSA_id:5283 Agrobacterium tumefaciens str. K-Ag-3
prokMSA_id:5284 Rhizobium genosp. Q str. BDV5102
prokMSA_id:5289 Agrobacterium rhizogenes IAM 13570
prokMSA_id:5292 Rhizobium sp. LMG 9509
prokMSA_id:5293 Agrobacterium tumefaciens str. Ch-Ag-4
prokMSA_id:17261 Rhizobium leguminosarum strain DASA23046 
prokMSA_id:24266 Rhizobium leguminosarum strain DASA23002 
prokMSA_id:29133 Rhizobium sp. PDA-1 
prokMSA_id:47187 Rhizobium leguminosarum strain DASA23111 
prokMSA_id:48790 Rhizobium leguminosarum strain DASA23052 
prokMSA_id:63509 Rhizobium tropici strain PRF77 complete 
prokMSA_id:76567 Rhizobium tropici UPRM8033 
prokMSA_id:80113 Rhizobium tropici EBRI 32 
prokMSA_id:80813 Rhizobium etli EBRI 2 
prokMSA_id:81692 Rhizobium sp. ORS217 
prokMSA_id:82246 Rhizobium sp. ORS214 
2.28.1.6.23.7145 OTU 1 seq
prokMSA_id:5272 Rhizobium sp. str. BR 8802 LMG 10020
2.28.1.6.23.7457 OTU 1 seq
prokMSA_id:5288 Rhizobium tropici LMG 10336
2.28.1.6.23.7478 OTU 1 seq
prokMSA_id:5290 Rhizobium tropici LMG 9503
2.28.1.6.24 RHB.LEGUMINOSARUM_SUBGROUP 87 seqs
2.28.1.6.24.1 RHB.LEGU11_SUBGROUP 83 seqs
2.28.1.6.24.1.6871 OTU 1 seq
prokMSA_id:5304 Rhizobium mongolense USDA 1832
2.28.1.6.24.1.7135 OTU 4 seqs
prokMSA_id:5311 Rhizobium gallicum str. R602sp
prokMSA_id:5312 Rhizobium gallicum str. CbS-1
prokMSA_id:5314 Rhizobium gallicum str. CbS-18
prokMSA_id:5315 Rhizobium gallicum str. FL27
2.28.1.6.24.1.7534 OTU 1 seq
prokMSA_id:29952 sludge H6 
2.28.1.6.24.1.7568 OTU 77 seqs
prokMSA_id:5299 Rhizobium etli CFN 42
prokMSA_id:5301 Rhizobium etli str. SEMIA 0430 USDA 2667
prokMSA_id:5302 Rhizobium gallicum str. R602sp
prokMSA_id:5303 Rhizobium CCBAU71462 CCBAU 71462
prokMSA_id:5305 Rhizobium mongolense USDA 1834
prokMSA_id:5306 Rhizobium mongolense USDA 1836
prokMSA_id:5308 Rhizobium sp. str. IS 123
prokMSA_id:5309 Rhizobium SH22623 str. SH22623
prokMSA_id:5316 Rhizobium etli str. TAL 182 USDA 9041
prokMSA_id:5320 Rhizobium mongolense USDA 1844
prokMSA_id:5322 Rhizobium mongolense USDA 1929
prokMSA_id:5325 Rhizobium leguminosarum IAM 12609
prokMSA_id:5331 Rhizobium 'USDA 1920' USDA 1920
prokMSA_id:5333 Rhizobium sp. str. HCNT 1
prokMSA_id:5334 Rhizobium leguminosarum USDA 2370
prokMSA_id:5352 Rhizobium leguminosarum LMG 8820 alpha purple
prokMSA_id:5353 Rhizobium leguminosarum str. Rlt E11
prokMSA_id:5354 Rhizobium leguminosarum str. Rtl E12
prokMSA_id:5357 Rhizobium leguminosarum USDA 2434
prokMSA_id:5358 Rhizobium leguminosarum USDA 2443
prokMSA_id:5359 Rhizobium leguminosarum USDA 2449
prokMSA_id:5360 Rhizobium leguminosarum USDA 2498
prokMSA_id:5361 Rhizobium leguminosarum USDA 2501
prokMSA_id:5362 Rhizobium 'ACCC 19667' ACCC 19667
prokMSA_id:5363 Rhizobium leguminosarum str. T24
prokMSA_id:5366 Rhizobium leguminosarum str. RCR 3644 USDA 2671. U29388
prokMSA_id:18033 Rhizobium sp. CIAT652 
prokMSA_id:18988 Rhizobium sp. NZN7 
prokMSA_id:20185 Rhizobium gallicum strain DASA12023 
prokMSA_id:24023 Rhizobium etli strain CIAT151 
prokMSA_id:24692 Rhizobium sp. AC100 
prokMSA_id:26893 Rhizobium sp. WSM749 
prokMSA_id:29072 Rhizobium sp. WSM1583 
prokMSA_id:32366 Rhizobium sp. CIAT613 
prokMSA_id:38301 Mesorhizobium sp. N36 
prokMSA_id:41100 Rhizobium sp. He-853 
prokMSA_id:41445 Rhizobium sp. strain rob20
prokMSA_id:45894 Rhizobium gallicum strain DASA12024 
prokMSA_id:49093 Rhizobium gallicum strain DASA12005 
prokMSA_id:56641 Rhizobium etli 
prokMSA_id:57882 Rhizobium sp. SH1718alt 
prokMSA_id:57888 Rhizobium sp. SH445 
prokMSA_id:61021 Rhizobium leguminosarum 
prokMSA_id:63514 Rhizobium etli strain PRF126 complete 
prokMSA_id:63520 Rhizobium etli strain PRF230 complete 
prokMSA_id:77281 Rhizobium tropici strain PRF54 complete AF260275
prokMSA_id:79676 Rhizobium etli EBRI 27 
prokMSA_id:80573 Rhizobium etli EBRI 3 
prokMSA_id:81128 Rhizobium sp. Dz6-4 
prokMSA_id:81330 Rhizobium sp. Dz12 
prokMSA_id:81359 Rhizobium leguminosarum bv. trifolii strain ARPV02 
prokMSA_id:81533 Rhizobium sp. Am4-1 
prokMSA_id:81608 Rhizobium sp. Db4-14 AY210708
prokMSA_id:81629 Rhizobium sp. Am4-4 
prokMSA_id:81786 Rhizobium sp. Dz8-2 
prokMSA_id:82038 Rhizobium sp. Ak3-1 
prokMSA_id:82148 Rhizobium sp. Gi7 
prokMSA_id:82161 Rhizobium sp. Ad2 
prokMSA_id:82352 Rhizobium sp. Dz6-14 
prokMSA_id:86921 Rhizobium sp. Trr-2 AF510384
prokMSA_id:86928 Rhizobium sp. Trp-1 AF511506
prokMSA_id:87031 Rhizobium sp. Trr-6 AF510631
prokMSA_id:87112 Rhizobium sp. Trr-8 AF510632
prokMSA_id:87118 Rhizobium sp. Trp-4 AF511499
prokMSA_id:87165 Rhizobium sp. Trp-2 AF511490
prokMSA_id:87278 Rhizobium sp. Trp-5 AF511501
prokMSA_id:87341 Rhizobium sp. Gls-2 AF511495
prokMSA_id:87379 Rhizobium sp. Crj-3 AF511505
prokMSA_id:87461 Rhizobium sp. Trp-3 AF511491
prokMSA_id:87615 Rhizobium sp. Pis-1 AF510626
prokMSA_id:87755 Rhizobium sp. Trr-4 AF510628
prokMSA_id:87807 Rhizobium sp. Trr-7 AF510379
prokMSA_id:87852 Rhizobium sp. Trp-6 AF510377
prokMSA_id:88017 Rhizobium sp. Trr-5 AF510630
prokMSA_id:88041 Rhizobium sp. Vif-1 AF510629
prokMSA_id:91304 Ochrobactrum sp. mp-3 AY331577
prokMSA_id:91905 Brucella sp. mp-7 AY331581
2.28.1.6.24.2 RHB.LEGU13_SUBGROUP 3 seqs
2.28.1.6.24.2.6727 OTU 1 seq
prokMSA_id:45429 Rhizobium sp. 1003 
2.28.1.6.24.2.6813 OTU 1 seq
prokMSA_id:5364 Rhizobium genosp. R str. BDV5365
2.28.1.6.24.2.7336 OTU 1 seq
prokMSA_id:5335 Rhizobium leguminosarum USDA 2508
2.28.1.6.24.3 RHB.SP3618_SUBGROUP 1 seq
2.28.1.6.24.3.6847 OTU 1 seq
prokMSA_id:5389 Rhizobium sp. str. RCR 3618D USDA 2947
2.28.1.6.25 RHB.HAINANENSE 1 seq
2.28.1.6.25.6634 OTU 1 seq
prokMSA_id:5393 Rhizobium hainanense str. I66 CCBAU 57015
2.28.1.6.26 AGROBACTERIUM_SUBGROUP 158 seqs
2.28.1.6.26.1 DV.RIBOFLAVINA_SUBGROUP 19 seqs
2.28.1.6.26.1.6695 OTU 1 seq
prokMSA_id:43964 Alpha RSppiC2 
2.28.1.6.26.1.6697 OTU 1 seq
prokMSA_id:78324 alpha clone:Rs-D84
2.28.1.6.26.1.6747 OTU 1 seq
prokMSA_id:71382 feedlot manure A6 
2.28.1.6.26.1.6823 OTU 1 seq
prokMSA_id:75186 alpha clone JG34-KF-245
2.28.1.6.26.1.7020 OTU 1 seq
prokMSA_id:19085 alpha clone BIfdii32
2.28.1.6.26.1.7127 OTU 1 seq
prokMSA_id:64044 clone:CF84
2.28.1.6.26.1.7188 OTU 1 seq
prokMSA_id:77616 alpha clone:Rs-B50
2.28.1.6.26.1.7190 OTU 1 seq
prokMSA_id:31502 L3-17C4 
2.28.1.6.26.1.7205 OTU 3 seqs
prokMSA_id:19620 Manganese-oxidizing SI85-9A1 
prokMSA_id:50645 strain R7951
prokMSA_id:77748 Fulvimarina litoralis strain HTCC2156 
2.28.1.6.26.1.7229 OTU 1 seq
prokMSA_id:61821 alpha clone CLi8 
2.28.1.6.26.1.7227 OTU 1 seq
prokMSA_id:5397 clone RF32
2.28.1.6.26.1.7298 OTU 1 seq
prokMSA_id:84123 Marine HP22 
2.28.1.6.26.1.7437 OTU 1 seq
prokMSA_id:84082 clone CCM21a 
2.28.1.6.26.1.7494 OTU 1 seq
prokMSA_id:21290 Agricultural soil clone SC-I-78 
2.28.1.6.26.1.7498 OTU 1 seq
prokMSA_id:5403 clone BSV03
2.28.1.6.26.1.7626 OTU 2 seqs
prokMSA_id:23947 Potato plant root clone RC-III-45 AJ252721
prokMSA_id:57724 Devosia neptuniae strain J1 
2.28.1.6.26.2 LIB.SP_SUBGROUP 4 seqs
2.28.1.6.26.2.7501 OTU 1 seq
prokMSA_id:5405 Liberobacter sp. str. Nelspruit
2.28.1.6.26.2.7603 OTU 3 seqs
prokMSA_id:5407 Liberobacter sp. str. Okinama
prokMSA_id:41828 Liberobacter endosymbiont of Diaphorina citri 
prokMSA_id:80801 Candidatus Liberibacter asiaticus 
2.28.1.6.26.3 AG.TUMEFACIENS_SUBGROUP 106 seqs
2.28.1.6.26.3.6631 OTU 1 seq
prokMSA_id:59889 alpha clone ccspost2181 
2.28.1.6.26.3.6785 OTU 1 seq
prokMSA_id:26211 clone d035 
2.28.1.6.26.3.6798 OTU 4 seqs
prokMSA_id:55671 Agrobacterium tumefaciens isolate TG12 
prokMSA_id:56300 Agrobacterium tumefaciens isolate TG14 
prokMSA_id:66244 Agrobacterium tumefaciens isolate S4 
prokMSA_id:66245 Agrobacterium tumefaciens isolate N21 
2.28.1.6.26.3.6804 OTU 1 seq
prokMSA_id:5424 Rhizobium SH19312 str. SH19312
2.28.1.6.26.3.6964 OTU 91 seqs
prokMSA_id:5409 Agrobacterium rubi IFO 13261
prokMSA_id:5410 Agrobacterium tumefaciens ATCC 4720 alpha purple
prokMSA_id:5413 Agrobacterium tumefaciens str. ICPB TT111 LMG 196
prokMSA_id:5414 Agrobacterium rubi IAM 13569
prokMSA_id:5415 Agrobacterium tumefaciens str. IAM 13558
prokMSA_id:5416 Agrobacterium sp. str. AF3.10
prokMSA_id:5417 Agrobacterium tumefaciens IAM 14141
prokMSA_id:5418 Agrobacterium tumefaciens NCPPB 2437
prokMSA_id:5420 Agrobacterium tumefaciens IAM 13129
prokMSA_id:5421 Rhizobium N220 str. N220
prokMSA_id:5423 Rhizobium sp. str. Esparseta 3
prokMSA_id:5425 Agrobacterium radiobacter LMG 383
prokMSA_id:5426 Agrobacterium sp. LMG 11915
prokMSA_id:5427 Agrobacterium sp. LMG 11936. AJ130721
prokMSA_id:5428 Agrobacterium tumefaciens NCPPB 1650. D14506
prokMSA_id:5430 Agrobacterium rubi LMG 156
prokMSA_id:16302 Agrobacterium tumefaciens strain CFBP2712 AJ389886
prokMSA_id:17155 Agrobacterium tumefaciens strain CFBP2243 AJ389893
prokMSA_id:17589 Agrobacterium tumefaciens strain S377 AJ389896
prokMSA_id:18318 Alpha SA-2 
prokMSA_id:19718 Agrobacterium tumefaciens strain CIP43-76 AJ389900
prokMSA_id:19912 Agrobacterium tumefaciens strain CFBP2885 AJ389887
prokMSA_id:20046 Agrobacterium tumefaciens strain CFBP2654 AJ389888
prokMSA_id:22329 Bradyrhizobium japonicum PRY62 complete AF239847
prokMSA_id:24597 Agrobacterium tumefaciens strain C58 AJ012209
prokMSA_id:24608 Agrobacterium tumefaciens strain Zutra3-1 AJ389901
prokMSA_id:26040 Agrobacterium tumefaciens strain NCPPB1641 AJ389902
prokMSA_id:26338 Agrobacterium tumefaciens strain IrT-JG-6
prokMSA_id:27184 Agrobacterium tumefaciens str. C58 linear chromosome section
prokMSA_id:27851 Agrobacterium tumefaciens strain Zutra F/1
prokMSA_id:28007 Agrobacterium tumefaciens strain CFBP2879 AJ389892
prokMSA_id:29220 Agrobacterium tumefaciens strain 52 AF388033
prokMSA_id:29367 Agrobacterium tumefaciens strain CIP127-76 AJ389898
prokMSA_id:30092 Agrobacterium tumefaciens strain CFBP2717 AJ389890
prokMSA_id:31517 Agrobacterium tumefaciens strain O363 AJ389908
prokMSA_id:32570 Agrobacterium tumefaciens str. C58 circular chromosome secti
prokMSA_id:32821 Agrobacterium tumefaciens strain 42 AF388030
prokMSA_id:33043 Q3-24C12 
prokMSA_id:34745 Agrobacterium tumefaciens strain Mushin6 AJ389905
prokMSA_id:36063 Rhizobium sp. GH-2001 
prokMSA_id:36496 Agrobacterium tumefaciens strain ICPB T37 AJ389906
prokMSA_id:37752 Arsenite-oxidizing BEN-5 
prokMSA_id:40914 Agrobacterium tumefaciens strain CIP28-75 AJ389899
prokMSA_id:41643 Agrobacterium tumefaciens strain RV3 AJ389903
prokMSA_id:41750 Agrobacterium tumefaciens strain C58 circular chromosome com
prokMSA_id:42402 Agrobacterium tumefaciens strain CIP111-78 AJ389897
prokMSA_id:42673 Agrobacterium tumefaciens str. C58 U. Washington chromosome 
prokMSA_id:43693 Agrobacterium tumefaciens strain CFBP2655 AJ389889
prokMSA_id:43713 Agrobacterium tumefaciens strain C58 circular chromosome sec
prokMSA_id:44308 Agrobacterium tumefaciens str. C58 linear chromosome section
prokMSA_id:44698 Agrobacterium tumefaciens str. C58 linear chromosome section
prokMSA_id:45163 Agrobacterium tumefaciens strain CFBP2884 AJ389894
prokMSA_id:45881 Agrobacterium tumefaciens strain C58 circular chromosome sec
prokMSA_id:47953 Bradyrhizobium japonicum PRY65 complete AF239848
prokMSA_id:49219 Agrobacterium tumefaciens strain CFBP2714 AJ389891
prokMSA_id:49778 Agrobacterium tumefaciens str. C58 linear chromosome section
prokMSA_id:50078 Agrobacterium tumefaciens strain 0362 AJ389907
prokMSA_id:51761 Agrobacterium radiobacter strain ATCC19358 AJ389904
prokMSA_id:52254 Agrobacterium tumefaciens strain S56 AJ389895
prokMSA_id:52570 Rape rhizosphere tsb058 
prokMSA_id:53312 Agrobacterium tumefaciens str. C58 circular chromosome secti
prokMSA_id:53665 Rhizobium sp. IRBG 74 clone 3 and -23S intergenic spacer AF3
prokMSA_id:53840 Agrobacterium tumefaciens str. C58 U. Washington chromosome 
prokMSA_id:54011 Rhizobium sp. IRBG 74 clone 20 and -23S intergenic spacer AF
prokMSA_id:57883 Rhizobium sp. SH1707neu AY141985
prokMSA_id:59901 alpha clone ccspost215 
prokMSA_id:60998 Agrobacterium tumefaciens AF531767
prokMSA_id:63604 Agrobacterium tumefaciens AY043382
prokMSA_id:70205 Agrobacterium albertimagni complete 
prokMSA_id:76490 alpha clone S15A-MN24
prokMSA_id:77462 Rhizobium sp. IRBG 74 AF271637
prokMSA_id:77622 alpha clone:APe4_7
prokMSA_id:77636 alpha clone:APe9_6
prokMSA_id:79849 Agrobacterium tumefaciens EBRI 20 
prokMSA_id:80249 Agrobacterium tumefaciens EBRI 25 
prokMSA_id:81672 Rhizobium sp. Ho-1 AY210716
prokMSA_id:82847 rumen clone BS32 
prokMSA_id:83717 Agrobacterium sp. JS71 
prokMSA_id:87015 Rhizobium sp. Phr-8 AF510634
prokMSA_id:87376 Rhizobium sp. Gls-5 AF511503
prokMSA_id:87790 Rhizobium sp. Glm-15 AF510375
prokMSA_id:87877 Rhizobium sp. Glm-16 AF510373
prokMSA_id:88011 Rhizobium sp. Glm-14 AF510371
prokMSA_id:91034 Agrobacterium tumefaciens rrnD operon genes tRNA-Ile tRNA-Al
prokMSA_id:91417 Agrobacterium tumefaciens operon genes tRNA-Ile tRNA-Ala 23S
prokMSA_id:91604 Agrobacterium tumefaciens rrnB operon genes tRNA-Ile tRNA-Al
prokMSA_id:91781 Agrobacterium tumefaciens rrnC operon genes tRNA-Ile tRNA-Al
prokMSA_id:91971 Rhizobium daejeonense AY341343
prokMSA_id:94089 Agrobacterium tumefaciens strain UP-3 AY364329
prokMSA_id:95229 alpha clone NAB19 AY395023
prokMSA_id:95756 Agrobacterium sp. AHL 7 AY379979
2.28.1.6.26.3.7223 OTU 1 seq
prokMSA_id:44538 clone d041 
2.28.1.6.26.3.7314 OTU 1 seq
prokMSA_id:60853 clone SG2-127 
2.28.1.6.26.3.7334 OTU 5 seqs
prokMSA_id:62396 alpha clone FTLM218 
prokMSA_id:66246 Agrobacterium tumefaciens isolate TJ6 
prokMSA_id:66249 Agrobacterium tumefaciens isolate C4 
prokMSA_id:66958 Agrobacterium sp. PB 
prokMSA_id:75548 alpha clone Gitt-KF-163 AJ532682
2.28.1.6.26.3.7349 OTU 1 seq
prokMSA_id:5412 Azospirillum sp. str. A1-3 DSM 1726
2.28.1.6.26.4 AG.VITIS_SUBGROUP 29 seqs
2.28.1.6.26.4.6765 OTU 1 seq
prokMSA_id:33915 IrT-JG-65/15 
2.28.1.6.26.4.6840 OTU 1 seq
prokMSA_id:51992 soil clone 1315-2 
2.28.1.6.26.4.6895 OTU 2 seqs
prokMSA_id:77394 Rhizobium galegae strain SAFR-031 
prokMSA_id:77532 Rhizobium galegae strain SAFR-030 
2.28.1.6.26.4.7041 OTU 10 seqs
prokMSA_id:5438 Rhizobium sp. str. OK-55
prokMSA_id:5444 Rhizobium galegae str. gal 1261 ATCC 43677 . D11343
prokMSA_id:5446 Rhizobium galegae IAM 13631
prokMSA_id:5448 Rhizobium galegae str. gal 1261 LMG 6214
prokMSA_id:5449 Rhizobium huautlense str. S02
prokMSA_id:5452 Rhizobium galegae str. NBIMTC 2246. Z79620
prokMSA_id:5454 Rhizobium galegae str. 59A2. AF025853
prokMSA_id:25256 Sinorhizobium sp. S009 
prokMSA_id:38159 Rhizobium sp. strain rob18
prokMSA_id:87964 Rhizobium sp. Gls-3 AF511497
2.28.1.6.26.4.7113 OTU 1 seq
prokMSA_id:5441 Allorhizobium undicola LMG 11875
2.28.1.6.26.4.7120 OTU 1 seq
prokMSA_id:5447 Rhizobium sp. str. 113
2.28.1.6.26.4.7380 OTU 10 seqs
prokMSA_id:5431 Agrobacterium vitis str. S4
prokMSA_id:5432 Agrobacterium vitis str. K309 NCPPB 3554 . D14502
prokMSA_id:5437 Agrobacterium vitis IAM 14140
prokMSA_id:5445 Agrobacterium vitis LMG 8750
prokMSA_id:5457 Agrobacterium vitis str. K309 NCPPB 3554 . U45329
prokMSA_id:25961 Agrobacterium vitus strain CFBP2617
prokMSA_id:31290 Agrobacterium vitis strain CFBP2678 AJ389910
prokMSA_id:33557 Agrobacterium vitus strain CFBP2736 AJ389912
prokMSA_id:46044 Agrobacterium vitus strain CFBP2737 AJ389913
prokMSA_id:98084 Agrobacterium vitis complete AB118158
2.28.1.6.26.4.7462 OTU 3 seqs
prokMSA_id:5450 str. NT-25
prokMSA_id:5451 str. NT-26
prokMSA_id:22665 Rhizobium sp. TCK strain TCK AJ294417
2.28.1.6.27 BARTONELLA_SUBGROUP 51 seqs
2.28.1.6.27.7056 OTU 5 seqs
prokMSA_id:16730 Bartonella sp. 99-BO1 
prokMSA_id:25998 Bartonella schoenbuchii strain R1
prokMSA_id:27653 Bartonella sp. 91-4 
prokMSA_id:42409 Bartonella sp. FC7049UT 
prokMSA_id:43831 Bartonella sp. Deer 159/660/1 
2.28.1.6.27.7105 OTU 5 seqs
prokMSA_id:60623 alpha clone AEGEAN_248 
prokMSA_id:60650 alpha clone AEGEAN_239 AF406522
prokMSA_id:60651 alpha clone AEGEAN_230 AF406521
prokMSA_id:60657 alpha clone AEGEAN_187 
prokMSA_id:60660 alpha clone AEGEAN_107 
2.28.1.6.27.7384 OTU 1 seq
prokMSA_id:5492 clone v9
2.28.1.6.27.7415 OTU 4 seqs
prokMSA_id:5467 Bartonella quintana str. Fuller ATCC VR-358
prokMSA_id:5479 Bartonella quintana
prokMSA_id:5495 Bartonella quintana str. Fuller ATCC VR-358
prokMSA_id:52696 Bartonella quintana 
2.28.1.6.27.7492 OTU 1 seq
prokMSA_id:37324 alpha CTD44B 
2.28.1.6.27.7567 OTU 1 seq
prokMSA_id:5504 str. BD7-3
2.28.1.6.27.7586 OTU 1 seq
prokMSA_id:5503 clone HstpL56
2.28.1.6.27.7599 OTU 1 seq
prokMSA_id:5468 str. DB1-14
2.28.1.6.27.7634 OTU 32 seqs
prokMSA_id:5462 Bartonella alsatica str. 382 CIP 105477
prokMSA_id:5463 Bartonella grahamii str. V2 NCTC 12860
prokMSA_id:5464 Bartonella sp. str. peromysci
prokMSA_id:5465 Bartonella vinsonii subsp. berkhoffii str. 93-C01 ATCC 51672
prokMSA_id:5466 Bartonella vinsonii subsp. vinsonii str. Baker ATCC VR-152
prokMSA_id:5469 Bartonella taylorii str. M6 NCTC 12861 . Z31350
prokMSA_id:5473 Bartonella henselae str. BA-TF
prokMSA_id:5474 Bartonella bacilliformis ATCC 35685. U26258
prokMSA_id:5475 Bartonella sp. str. R-phy1
prokMSA_id:5481 Bartonella tribocorum str. IBS 506 CIP 105476
prokMSA_id:5482 Bartonella NVH1 str. nvh1
prokMSA_id:5483 Bartonella sp. str. C5rat
prokMSA_id:5484 Bartonella sp. str. C7rat
prokMSA_id:5485 Bartonella vinsonii subsp. vinsonii str. Baker ATCC VR-152
prokMSA_id:5487 Bartonella henselae str. Houston-1
prokMSA_id:5489 Bartonella henselae str. FR96/BK3
prokMSA_id:5490 Bartonella henselae str. FR96/BK38
prokMSA_id:5491 Bartonella henselae str. FR97/K7
prokMSA_id:5493 Bartonella koehlerae str. C-29 ATCC 700693
prokMSA_id:5496 Bartonella vinsonii subsp. vinsonii str. Baker ATCC VR-152
prokMSA_id:5498 Bartonella sp. str. C1phy
prokMSA_id:5499 Bartonella sp. str. C4phy
prokMSA_id:5500 Bartonella sp. str. N40
prokMSA_id:5501 Bartonella sp. str. R-phy2
prokMSA_id:5502 Bartonella elizabethae str. F9251; B91-002005 ATCC 49927
prokMSA_id:5505 Bartonella doshiae str. R18 NCTC 12862
prokMSA_id:17437 Bartonella vinsonii subsp. arupensis 
prokMSA_id:25328 Bartonella sp. IBS 206 
prokMSA_id:46747 Bartonella birtlesii AF204274
prokMSA_id:49049 Bartonella capreoli 
prokMSA_id:52831 Bartonella henselae 
prokMSA_id:53421 Bartonella vinsonii subsp. berkhoffii ; -23S intergenic spac
2.28.1.7 CAULOBACTER_GROUP 126 seqs
2.28.1.7.2 PB.IMMOBILE_SUBGROUP 6 seqs
2.28.1.7.2.6929 OTU 1 seq
prokMSA_id:5508 Phenylobacterium immobile str. E DSM 1986
2.28.1.7.2.6953 OTU 2 seqs
prokMSA_id:5512 Caulobacter sp. str. FWC21
prokMSA_id:21440 Caulobacter 5C2 AF245033
2.28.1.7.2.7134 OTU 1 seq
prokMSA_id:52287 Alpha A0902 
2.28.1.7.2.7245 OTU 2 seqs
prokMSA_id:46818 Caulobacter sp. H62 
prokMSA_id:77947 alpha clone:APe9_7
2.28.1.7.3 CAU.VIBRIOIDES_SUBGROUP_II 49 seqs
2.28.1.7.3.6668 OTU 1 seq
prokMSA_id:30983 WD233 clone WD233
2.28.1.7.3.7231 OTU 1 seq
prokMSA_id:54353 WD297 clone WD297
2.28.1.7.3.7257 OTU 1 seq
prokMSA_id:55270 clone D
2.28.1.7.3.7299 OTU 5 seqs
prokMSA_id:5551 Caulobacter henricii ATCC 15253
prokMSA_id:5553 Caulobacter sp. str. FWC20
prokMSA_id:5558 Caulobacter henricii ATCC 15253
prokMSA_id:5560 Caulobacter henricii ATCC 15253
prokMSA_id:89320 Caulobacter sp. clone I-14 AF523056
2.28.1.7.3.7335 OTU 1 seq
prokMSA_id:5517 str. TM 16
2.28.1.7.3.7355 OTU 1 seq
prokMSA_id:75785 alpha clone JG37-AG-32
2.28.1.7.3.7385 OTU 28 seqs
prokMSA_id:5523 Mycoplana segnis IFO 13240
prokMSA_id:5524 Caulobacter vibrioides NCIMB 9082. AB008531
prokMSA_id:5525 Caulobacter crescentus str. CB2 ATCC 15252. AJ227756
prokMSA_id:5526 Caulobacter sp. str. FWC06
prokMSA_id:5527 Caulobacter sp. str. FWC08
prokMSA_id:5528 Caulobacter sp. str. FWC16. AJ227763
prokMSA_id:5529 Caulobacter sp. str. FWC17
prokMSA_id:5530 Caulobacter sp. str. FWC18
prokMSA_id:5531 Caulobacter sp. str. FWC26
prokMSA_id:5532 Caulobacter sp. str. FWC28. AJ227769
prokMSA_id:5533 Caulobacter sp. str. FWC29
prokMSA_id:5534 Caulobacter sp. str. FWC31. AJ227771
prokMSA_id:5535 Caulobacter sp. str. FWC33
prokMSA_id:5536 Caulobacter sp. str. FWC35
prokMSA_id:5537 Caulobacter sp. str. FWC41
prokMSA_id:5538 Caulobacter sp. str. FWC42. AJ227776
prokMSA_id:5539 Caulobacter sp. str. FWC45. AJ227777
prokMSA_id:5540 Caulobacter vibrioides str. CB51 Neotype strain DSM 9893. AJ
prokMSA_id:5541 Caulobacter vibrioides ATCC 11764. AJ227755
prokMSA_id:5543 Caulobacter vibrioides str. CB51
prokMSA_id:5544 Caulobacter segnis str. MBIC2835
prokMSA_id:5546 Caulobacter crescentus str. CB2
prokMSA_id:5548 Caulobacter sp. str. FWC02
prokMSA_id:36796 alpha clone BImi11
prokMSA_id:44545 Caulobacter crescentus strain CB15 ATCC 19089 AJ227757
prokMSA_id:47767 clone GL182.16 AY038618
prokMSA_id:74056 Caulobacter crescentus CB15 complete genome
prokMSA_id:91213 G8 AY345391
2.28.1.7.3.7396 OTU 4 seqs
prokMSA_id:5516 Caulobacter fusiformis ATCC 15257
prokMSA_id:5518 Caulobacter fusiformis ATCC 15257
prokMSA_id:5557 Caulobacter fusiformis ATCC 15257
prokMSA_id:47991 rape rhizosphere wr0031 
2.28.1.7.3.7406 OTU 5 seqs
prokMSA_id:17111 sludge H4 
prokMSA_id:44246 sludge H29 
prokMSA_id:46308 sludge S7 
prokMSA_id:75034 alpha clone JG37-AG-6
prokMSA_id:76546 alpha clone JG37-AG-130
2.28.1.7.3.7562 OTU 1 seq
prokMSA_id:5552 Afipia genosp. 14 str. G8999
2.28.1.7.3.7578 OTU 1 seq
prokMSA_id:5554 Caulobacter sp. str. FWC38
2.28.1.7.4 ASC.EXCENTRICUS_SUBGROUP 6 seqs
2.28.1.7.4.6915 OTU 2 seqs
prokMSA_id:5564 Asticcacaulis biprosthecium str. MBIC3411 ATCC 27554
prokMSA_id:25580 Asticcacaulis biprosthecium strain DSM 4723
2.28.1.7.4.6977 OTU 1 seq
prokMSA_id:17344 Asticcacaulis biprosthecium 
2.28.1.7.4.7486 OTU 2 seqs
prokMSA_id:5563 Asticcacaulis excentricus ATCC 15261
prokMSA_id:24445 Asticcacaulis excentricus strain DSM 4724
2.28.1.7.4.7594 OTU 1 seq
prokMSA_id:5562 Asticcacaulis excentricus ATCC 15261
2.28.1.7.5 CAU.SUBVIBRIOIDES_SUBGROUP 65 seqs
2.28.1.7.5.6656 OTU 3 seqs
prokMSA_id:5600 Caulobacter sp. str. MCS24
prokMSA_id:5616 Caulobacter MBIC3983 str. MBIC3983
prokMSA_id:5621 Brevundimonas MCS17 str. MCS17
2.28.1.7.5.6781 OTU 6 seqs
prokMSA_id:5568 Caulobacter intermedius str. CB63 ACM 2608
prokMSA_id:5578 Caulobacter intermedius str. CB63 ATCC 15262
prokMSA_id:5603 Brevundimonas vesicularis ACM 2862
prokMSA_id:5606 str. 4-8
prokMSA_id:78340 alpha clone:APe2_20
prokMSA_id:78399 alpha clone:APe2_51
2.28.1.7.5.6814 OTU 1 seq
prokMSA_id:48143 alpha rcr_12 
2.28.1.7.5.6904 OTU 16 seqs
prokMSA_id:5571 Brevundimonas vesicularis IAM 12105
prokMSA_id:5575 Brevundimonas FWC14 str. FWC14
prokMSA_id:5584 Brevundimonas V4.BO.10 str. V4.BO.10
prokMSA_id:5585 Caulobacter sp. str. KA5 DSM 6812
prokMSA_id:5589 str. MBIC3034
prokMSA_id:5590 str. MBIC3032
prokMSA_id:5591 str. MBIC3033
prokMSA_id:5592 str. MBIC3036
prokMSA_id:5607 unnamed organism
prokMSA_id:5611 Brevundimonas vesicularis LMG 11141
prokMSA_id:5613 str. MBIC3029
prokMSA_id:20726 Brevundimonas sp. ikaite c3 isolate ikaite c3
prokMSA_id:46088 Blackwater bioreactor BW23 
prokMSA_id:73480 Brevundimonas sp. LMG 19834 strain LMG 19834
prokMSA_id:75508 alpha clone S15A-MN37
prokMSA_id:82124 Brevundimonas vesicularis 
2.28.1.7.5.6909 OTU 10 seqs
prokMSA_id:5572 Brevundimonas diminuta ATCC 11568
prokMSA_id:5593 Brevundimonas diminuta
prokMSA_id:5596 Brevundimonas diminuta LMG 2089
prokMSA_id:5597 Brevundimonas diminuta LMG 2337. AJ227779
prokMSA_id:5598 Caulobacter sp. str. MBIC1405. AB016847
prokMSA_id:5599 str. HTA333
prokMSA_id:5615 Mycoplana bullata IAM 13153
prokMSA_id:5625 Brevundimonas bullata str. MBIC2745
prokMSA_id:87601 alpha clone SM2A11 AY293404
prokMSA_id:89703 Drinking water MB11 AY328842
2.28.1.7.5.6930 OTU 1 seq
prokMSA_id:19977 WD282 clone WD282
2.28.1.7.5.6968 OTU 1 seq
prokMSA_id:5595 Brevundimonas diminuta IAM 12691
2.28.1.7.5.7112 OTU 1 seq
prokMSA_id:5594 Brevundimonas diminuta IFO 3140
2.28.1.7.5.7359 OTU 14 seqs
prokMSA_id:5579 Brevundimonas bacteroides str. CB7 LMG 15096
prokMSA_id:5586 Caulobacter sp. str. CB28 DSM 10670
prokMSA_id:5602 Caulobacter bacteroides ATCC 15254
prokMSA_id:5618 Brevundimonas FWC04 str. FWC04
prokMSA_id:5619 Brevundimonas FWC05 str. FWC05
prokMSA_id:5626 Caulobacter variabilis str. CB17 ATCC 15255
prokMSA_id:5627 Caulobacter subvibrioides subsp. albus ATCC 15265
prokMSA_id:5628 Caulobacter bacteroides NCIMB 9790
prokMSA_id:40068 Brevundimonas alba strain 20 
prokMSA_id:43186 Brevundimonas variabilis strain ATCC 15255 
prokMSA_id:49192 alpha clone SM2B07 
prokMSA_id:69859 Brevundimonas sp. AP-2 
prokMSA_id:71758 alpha strain OS-123B
prokMSA_id:79008 Brevundimonas sp
2.28.1.7.5.7366 OTU 7 seqs
prokMSA_id:5567 Caulobacter subvibrioides ATCC 15264
prokMSA_id:5617 Brevundimonas subvibrioides str. CB81 LMG 14903
prokMSA_id:5620 Brevundimonas FWC43 str. FWC43
prokMSA_id:5622 Caulobacter sp. str. CB66 DSM 10556
prokMSA_id:5623 Caulobacter sp. str. CB26 DSM 6811
prokMSA_id:5624 Caulobacter sp. str. CB35 DSM 10560
prokMSA_id:31667 rape rhizosphere wr0066 
2.28.1.7.5.7425 OTU 1 seq
prokMSA_id:50466 clone HTC6 
2.28.1.7.5.7436 OTU 3 seqs
prokMSA_id:5583 Brevundimonas FWC40 str. FWC40
prokMSA_id:21958 Brevundimonas intermedia 
prokMSA_id:63466 Brevundimonas sp. p22P 
2.28.1.7.5.7549 OTU 1 seq
prokMSA_id:50815 rcr_19 
2.28.1.8 RHODOBACTER-RHODOVULUM-HYPHOMONAS-RICKETTSIA 961 seqs
2.28.1.8.1 RHODOBACTER_GROUP 530 seqs
2.28.1.8.1.1 ROS.LITORALIS_SUBGROUP 368 seqs
2.28.1.8.1.1.1 ROS.DENITRIFICANS_SUBGROUP 208 seqs
2.28.1.8.1.1.1.6652 OTU 1 seq
prokMSA_id:45368 Roseobacter sp. clone Arctic96A-1 
2.28.1.8.1.1.1.6686 OTU 1 seq
prokMSA_id:50030 Roseobacter CtaxMed-50 
2.28.1.8.1.1.1.6701 OTU 3 seqs
prokMSA_id:35270 Roseobacter NAC11-3 
prokMSA_id:69570 alpha clone DC11-80-2 
prokMSA_id:74007 alpha clone DC5-80-3 
2.28.1.8.1.1.1.6761 OTU 5 seqs
prokMSA_id:17964 Roseobacter 667-19 isolate 667-19
prokMSA_id:75072 Sulfitobacter sp. PIC-70 isolate PIC-70
prokMSA_id:76222 Sulfitobacter sp. PIC-74 isolate PIC-74
prokMSA_id:76561 Sulfitobacter sp. PIC-72 isolate PIC-72
prokMSA_id:76775 Sulfitobacter sp. PIC-69 isolate PIC-69
2.28.1.8.1.1.1.6827 OTU 1 seq
prokMSA_id:80289 Arctic sea ice ARK10013 
2.28.1.8.1.1.1.6889 OTU 1 seq
prokMSA_id:20261 TAYNAYA-14 
2.28.1.8.1.1.1.6903 OTU 1 seq
prokMSA_id:46473 clone 4-Org2-20 
2.28.1.8.1.1.1.6980 OTU 14 seqs
prokMSA_id:5632 str. SRF3. AJ002565
prokMSA_id:5652 Roseobacter denitrificans str. OCh 114 . M59063
prokMSA_id:5669 str. SRF2
prokMSA_id:5714 Ruegeria atlantica str. 1480 IAM 14463 . D88526
prokMSA_id:33581 Sulfitobacter sp. MA2824 AF186700
prokMSA_id:47852 Sulfitobacter SIC.8141 AF277511
prokMSA_id:50766 alpha CHAB-I-5 5' AJ240910
prokMSA_id:61109 Alpha MGP-80 
prokMSA_id:68976 Alpha R2A57 ; tRNA-Ala and tRNA-Ile genes complete ; and 23S
prokMSA_id:77756 clone s95 AY171343
prokMSA_id:77996 clone 38 AY172307
prokMSA_id:80962 Arctic sea ice ARK10021 
prokMSA_id:93537 Tanella vestfoldensis strain LMG 22003T AJ582226
prokMSA_id:94079 Tanella vestfoldensis strain LMG 22006 AJ582227
2.28.1.8.1.1.1.6982 OTU 1 seq
prokMSA_id:81023 clone BTM32 
2.28.1.8.1.1.1.6999 OTU 6 seqs
prokMSA_id:5648 alpha Shippagan 
prokMSA_id:80702 Arctic sea ice associated ARK10278 
prokMSA_id:81324 Sulfitobacter sp. ANT9115 AY167322
prokMSA_id:81861 Roseobacter sp. ANT909 
prokMSA_id:82006 Antarctic sea ice clone ANTXI/4_14-133 
prokMSA_id:82225 Psychromonas sp. ANT9282b 
2.28.1.8.1.1.1.7050 OTU 2 seqs
prokMSA_id:61885 alpha clone R103-B9 AF449224
prokMSA_id:61886 alpha clone R103-B28 
2.28.1.8.1.1.1.7072 OTU 2 seqs
prokMSA_id:81992 Roseobacter sp. ANT9276a 
prokMSA_id:82344 Roseobacter sp. ANT9270 
2.28.1.8.1.1.1.7111 OTU 1 seq
prokMSA_id:33738 Alpha MC-1 
2.28.1.8.1.1.1.7267 OTU 1 seq
prokMSA_id:36124 alpha MERTZ_21CM_146 
2.28.1.8.1.1.1.7277 OTU 2 seqs
prokMSA_id:5649 str. B5-6
prokMSA_id:5650 str. B5-6
2.28.1.8.1.1.1.7279 OTU 1 seq
prokMSA_id:41049 antarctic soil clone bh3.3 
2.28.1.8.1.1.1.7311 OTU 1 seq
prokMSA_id:48018 alpha clone:TYM--4 
2.28.1.8.1.1.1.7331 OTU 1 seq
prokMSA_id:31713 alpha clone MPD-20 
2.28.1.8.1.1.1.7363 OTU 1 seq
prokMSA_id:49670 clone KS14 
2.28.1.8.1.1.1.7364 OTU 8 seqs
prokMSA_id:5640 Sulfitobacter DSS-2 str. DSS-2
prokMSA_id:5642 str. S34
prokMSA_id:19696 strain R7706
prokMSA_id:29924 Sulfitobacter brevis strain Ekho Lake-162
prokMSA_id:30176 Abyssal strain AIII3 
prokMSA_id:75228 Sulfitobacter sp. LM-16 isolate LM-16
prokMSA_id:76761 Sulfitobacter sp. BIO-7 isolate BIO-7
prokMSA_id:85401 Sulfitobacter pontiacus isolate 4301-10/3
2.28.1.8.1.1.1.7383 OTU 4 seqs
prokMSA_id:17447 Roseobacter sp. KT0202a 
prokMSA_id:36728 marine alpha AS-21 
prokMSA_id:56667 Rhodobacteraceae AP-27 
prokMSA_id:84036 Marine arctic deep-sea HD9 
2.28.1.8.1.1.1.7405 OTU 1 seq
prokMSA_id:79185 sequences clone: IndB1-58
2.28.1.8.1.1.1.7433 OTU 32 seqs
prokMSA_id:5631 Sulfitobacter mediterraneus str. CH-B427
prokMSA_id:5644 Roseobacter litoralis ATCC 49566
prokMSA_id:5651 Roseobacter denitrificans str. OCh 114
prokMSA_id:5653 Roseobacter denitrificans str. OCh 114
prokMSA_id:5708 clone TAYNAYA-15. AF142961
prokMSA_id:18019 Rhodobacter group CtaxMed-9 AF259605
prokMSA_id:21484 alpha SIC.10342 AF277525
prokMSA_id:26162 alpha SIC.8142 AF277512
prokMSA_id:28230 Antarctic seawater R7371 
prokMSA_id:30122 marine alpha AS-22 AJ391183
prokMSA_id:32299 Staleya guttiformis strain Ekho Lake-38
prokMSA_id:35200 Marine SCRIPPS_101 AF359537
prokMSA_id:46595 Roseobacter 667-4 isolate 667-4
prokMSA_id:48599 strain R7091
prokMSA_id:52404 Marine ATAM173a_17 
prokMSA_id:70710 clone 4-Org1-37 AF143824
prokMSA_id:74900 Sulfitobacter sp. HEL-78 isolate HEL-78 AJ534230
prokMSA_id:75085 Staleya sp. LM-9 isolate LM-9 AJ534234
prokMSA_id:75251 Staleya sp. LM-10 isolate LM-10
prokMSA_id:75623 Staleya sp. LM-7 isolate LM-7
prokMSA_id:75812 Sulfitobacter sp. DFL-23 isolate DFL-23
prokMSA_id:76030 Sulfitobacter sp. PIC-76 isolate PIC-76
prokMSA_id:76156 Sulfitobacter sp. HEL-76 isolate HEL-76 AJ534228
prokMSA_id:76632 Sulfitobacter sp. DFL-10 isolate DFL-10
prokMSA_id:76795 Sulfitobacter sp. HEL-45 isolate HEL-45 AJ534226
prokMSA_id:76942 Sulfitobacter sp. BIO-205 isolate BIO-205 AJ534209
prokMSA_id:77822 clone 311 AY172273
prokMSA_id:78686 Sulfitobacter deliciae strain KMM 3554 AY180102
prokMSA_id:78878 Sulfitobacter dubium strain KMM 3584 
prokMSA_id:79547 Alpha UMB3C 
prokMSA_id:83854 Oceanibulbus indoliflex strain Hel 45
prokMSA_id:85267 Sulfitobacter sp. 4318-8/2 isolate 4318-8/2
2.28.1.8.1.1.1.7453 OTU 1 seq
prokMSA_id:75731 Sulfitobacter sp. BIO-11 isolate BIO-11
2.28.1.8.1.1.1.7499 OTU 1 seq
prokMSA_id:32000 Alpha 'ANG clone 1995' 
2.28.1.8.1.1.1.7511 OTU 1 seq
prokMSA_id:5629 symbiont of Prionitis lanceolata gall
2.28.1.8.1.1.1.7560 OTU 112 seqs
prokMSA_id:5630 Roseobacter Prionitis decipiens symbiont
prokMSA_id:5659 Roseobacter J2W
prokMSA_id:5660 Roseobacter J8W
prokMSA_id:17095 Alpha RS29AI4 AF190210
prokMSA_id:17479 marine D033 AF177566
prokMSA_id:19633 Rhodobacter group clone D099 AF367395
prokMSA_id:20851 alpha 128-27 AF473920
prokMSA_id:21624 Rhodobacter group clone D128 AF367402
prokMSA_id:21726 SW8 AB047143
prokMSA_id:23231 Humic substances enrichment clone A32 AF231433
prokMSA_id:23678 marine D019 AF177558
prokMSA_id:23711 Rhodobacter group clone D129 AF367403
prokMSA_id:23794 alpha 128-41 AF473928
prokMSA_id:26535 marine D131 AF177569
prokMSA_id:26869 marine D006 AF177550
prokMSA_id:27011 marine D013 AF177553
prokMSA_id:27347 marine D021 AF177559
prokMSA_id:27727 marine 5' U84033
prokMSA_id:28125 Rhodobacter group clone D103 AF367399
prokMSA_id:28489 marine 5' U84029
prokMSA_id:29993 marine U84026
prokMSA_id:33654 Roseobacter kpc14f AF194398
prokMSA_id:34644 Rhodobacter group clone D058 AF367385
prokMSA_id:35806 marine 5' U84030
prokMSA_id:36176 marine D016 AF177556
prokMSA_id:37297 marine D015 AF177555
prokMSA_id:38977 marine D005 AF177549
prokMSA_id:39602 Roseobacter sp. Prionitis filiformis symbiont 
prokMSA_id:40701 marine 5' U84024
prokMSA_id:42665 clone KS5 
prokMSA_id:43595 marine D014 AF177554
prokMSA_id:43926 marine 5' U84023
prokMSA_id:44395 Agrobacterium kpc11f AF194392
prokMSA_id:45040 DMSP-degrading marine JA13 AF296147
prokMSA_id:46669 marine alpha BY-74 AJ298352
prokMSA_id:46840 marine D028 AF177562
prokMSA_id:47573 marine D030 AF177564
prokMSA_id:47757 Rhodobacter group clone D045 AF367381
prokMSA_id:48437 marine U84036
prokMSA_id:49265 Alpha SOGA18 AJ244795
prokMSA_id:49308 marine alpha BY-95 AJ298353
prokMSA_id:50041 Alpha SOGA3 AJ244781
prokMSA_id:54244 Slope strain DIII4* 
prokMSA_id:55927 alpha SH-316 AY095922
prokMSA_id:56424 alpha pA-13 AY095612
prokMSA_id:56502 Rhodobacter group SH-4 AY095898
prokMSA_id:56559 SB-46-DB AJ319855
prokMSA_id:57753 Marine alpha WTs-5 AJ512211
prokMSA_id:59165 Roseobacter sp. RED85 AY136135
prokMSA_id:59166 Roseobacter gallaeciensis AY136134
prokMSA_id:59224 SB-14/19-LD AJ319863
prokMSA_id:59240 SB-8/30-AG AJ319843
prokMSA_id:61951 Roseobacter-like sp. V4.ME.23 
prokMSA_id:64897 alpha pT-425 AY095884
prokMSA_id:64908 alpha pT-402 AY095875
prokMSA_id:64984 Rhodobacter group SH-323 AY095926
prokMSA_id:65004 alpha SH-106 AY095904
prokMSA_id:65055 Rhodobacter group HI-12 AY095765
prokMSA_id:65067 alpha NL-148R AY095752
prokMSA_id:65069 alpha NL-145R AY095749
prokMSA_id:65072 alpha NL-143 AY095745
prokMSA_id:65099 alpha NL-3 AY095715
prokMSA_id:65121 Rhodobacter group OR-117 AY095686
prokMSA_id:65126 Rhodobacter group OR-115 AY095685
prokMSA_id:65131 Rhodobacter group OR-104 AY095678
prokMSA_id:65140 alpha OS2K-17 AY095666
prokMSA_id:65153 alpha pA-22 AY095617
prokMSA_id:65154 alpha pA-14 AY095613
prokMSA_id:65159 alpha pA-8 AY095611
prokMSA_id:65161 alpha pA-5 AY095608
prokMSA_id:65163 alpha pA-1 AY095604
prokMSA_id:65171 alpha PPO-15 AY095592
prokMSA_id:65186 Rhodobacter group WR-44 AY095573
prokMSA_id:68669 Prionitis sp. GIg-5 isolate GIg-5 AJ439357
prokMSA_id:68670 Ruegeria sp. GPl-3 isolate GPl-3 AJ439359
prokMSA_id:68671 Ruegeria sp. RTs-2 isolate RTs-2 AJ439356
prokMSA_id:68672 Ruegeria sp. SPl-1 isolate SPl-1 AJ439358
prokMSA_id:68674 Ruegeria sp. GIg-3 isolate GIg-3 AJ439360
prokMSA_id:68675 Ruegeria sp. WRs-11 isolate WRs-11 AJ439355
prokMSA_id:69379 alpha clone A191-7 AF544896
prokMSA_id:69697 alpha isolate DGGE band C14 AF466885
prokMSA_id:70578 alpha isolate DGGE band C40 AF466921
prokMSA_id:71324 Ruegeria sp. TCg-3 isolate TCg-3 AJ515038
prokMSA_id:71580 Roseobacter sp. KT0917 
prokMSA_id:71804 Slope strain EI1* 
prokMSA_id:72021 Rhodobacteraceae LSc-10 isolate LSc-10 AJ515035
prokMSA_id:72376 Antarctobacter sp. LTs-7 isolate LTs-7 AJ515037
prokMSA_id:72563 alpha isolate DGGE band A'5 AF466902
prokMSA_id:72959 marine alpha AY-58 AJ298351
prokMSA_id:74444 alpha clone A191-1 AF544890
prokMSA_id:74518 Ruegeria sp. GIg-9 isolate GIg-9 AJ515044
prokMSA_id:74704 alpha QSSC9L-6 AF170784
prokMSA_id:74754 marine D009 AF177551
prokMSA_id:75436 alpha DGGE band GL2.3 AF344295
prokMSA_id:77644 clone 320 AY172276
prokMSA_id:78028 clone 113 AY172274
prokMSA_id:79622 clone BMS18 AY193216
prokMSA_id:79969 clone BMS49 AY193228
prokMSA_id:80376 clone BMS33 AY193224
prokMSA_id:80431 clone BTM82 AY193282
prokMSA_id:80890 clone BMS82 AY193231
prokMSA_id:80899 clone BMS21 AY193217
prokMSA_id:80948 clone BMS13 
prokMSA_id:81551 gamma clone DBS7 AF466710
prokMSA_id:82740 alpha isolate SA-5 AJ495605
prokMSA_id:82998 Marine arctic deep-sea HH8 AJ557864
prokMSA_id:83010 Alpha UST010723-016 AY241410
prokMSA_id:83361 alpha clone FBE5 AY263714
prokMSA_id:83713 alpha clone FBR14 AY263728
prokMSA_id:88691 alpha clone A115-15 AY323136
prokMSA_id:91288 alpha DGGE Band 12 AY258610
prokMSA_id:91878 Roseobacter sp. TM1035 AY332660
2.28.1.8.1.1.1.7627 OTU 1 seq
prokMSA_id:32086 Rhodobacter CtaxPhil-8 
2.28.1.8.1.1.1.7653 OTU 1 seq
prokMSA_id:34872 Ruegeria sp. UST991130-042 
2.28.1.8.1.1.2 RG.ALGICOLA_SUBGROUP 69 seqs
2.28.1.8.1.1.2.6629 OTU 1 seq
prokMSA_id:5658 Roseobacter QSSC9-8 str. QSSC9-8
2.28.1.8.1.1.2.6642 OTU 1 seq
prokMSA_id:25112 Marine isolate SRF1 
2.28.1.8.1.1.2.6679 OTU 1 seq
prokMSA_id:80690 Arctic sea ice ARK10226 
2.28.1.8.1.1.2.6684 OTU 2 seqs
prokMSA_id:30481 marine 
prokMSA_id:35714 marine 
2.28.1.8.1.1.2.6691 OTU 2 seqs
prokMSA_id:21303 Alpha Y3F 
prokMSA_id:27170 Marine Y4I 
2.28.1.8.1.1.2.6784 OTU 3 seqs
prokMSA_id:81400 Roseobacter sp. ANT9234 
prokMSA_id:81559 Roseobacter sp. ANT9274 
prokMSA_id:82275 Roseobacter sp. ANT9240 
2.28.1.8.1.1.2.6796 OTU 5 seqs
prokMSA_id:29579 Roseobacter NAC11-1 
prokMSA_id:29665 alpha clone CD2AC12 AY038571
prokMSA_id:40328 alpha clone CD2H3 AY038469
prokMSA_id:43676 alpha clone SIMO CL-S6-172 AF439417
prokMSA_id:45067 Roseobacter NAC1-1 
2.28.1.8.1.1.2.6802 OTU 1 seq
prokMSA_id:21918 clone KS97 
2.28.1.8.1.1.2.6848 OTU 1 seq
prokMSA_id:27774 Hydrothermal vent strain NF18 
2.28.1.8.1.1.2.6862 OTU 1 seq
prokMSA_id:61254 alpha isolate PH32
2.28.1.8.1.1.2.6888 OTU 1 seq
prokMSA_id:55371 Hydrothermal vent strain TB66 
2.28.1.8.1.1.2.6932 OTU 1 seq
prokMSA_id:31026 clone KS7 
2.28.1.8.1.1.2.6955 OTU 8 seqs
prokMSA_id:44060 Roseobacter NAC11-6 
prokMSA_id:61128 Alpha MGP-7 
prokMSA_id:68973 alpha MB11C09 ; tRNA-Ile and tRNA-Ala genes complete ; and 2
prokMSA_id:79810 Arctic sea ice ARK10233 
prokMSA_id:80429 Arctic sea ice ARK10055 
prokMSA_id:80486 clone ARKIA-77 
prokMSA_id:81959 Roseobacter sp. ANT9082 
prokMSA_id:82093 Roseobacter sp. ANT9283 
2.28.1.8.1.1.2.6960 OTU 1 seq
prokMSA_id:75789 Alpha GL2 
2.28.1.8.1.1.2.7026 OTU 10 seqs
prokMSA_id:5654 Roseobacter gallaeciensis str. BS107 CIP 105210
prokMSA_id:5657 str. 303
prokMSA_id:16469 Roseobacter sp. JLN-A020 strain
prokMSA_id:29620 Marine alpha BBAT2 
prokMSA_id:40286 marine PP-154 
prokMSA_id:41631 Unknown marine alpha JP88.1 
prokMSA_id:44513 marine alpha AS-11 
prokMSA_id:45273 Ruegeria sp. MB2 
prokMSA_id:76304 Alpha HY-103 isolate HY-103
prokMSA_id:83687 Rhodobacteraceae T5 
2.28.1.8.1.1.2.7033 OTU 1 seq
prokMSA_id:62509 Rhodobacter group clone LA1-B32N 
2.28.1.8.1.1.2.7046 OTU 3 seqs
prokMSA_id:20502 Marine ATAM407_56 
prokMSA_id:28150 Roseobacter 667-2 isolate 667-2
prokMSA_id:29429 Unknown marine alpha JP7.1 AY007679
2.28.1.8.1.1.2.7054 OTU 2 seqs
prokMSA_id:5655 Roseobacter ISM str. ISM
prokMSA_id:83398 Rhodobacteraceae T11 
2.28.1.8.1.1.2.7061 OTU 1 seq
prokMSA_id:5667 clone HstpL28
2.28.1.8.1.1.2.7062 OTU 1 seq
prokMSA_id:5668 clone HstpL78
2.28.1.8.1.1.2.7079 OTU 1 seq
prokMSA_id:5676 clone ORGANIC-12
2.28.1.8.1.1.2.7082 OTU 1 seq
prokMSA_id:5677 Roseovarius ORGANIC-11
2.28.1.8.1.1.2.7099 OTU 1 seq
prokMSA_id:5679 unnamed organism
2.28.1.8.1.1.2.7098 OTU 1 seq
prokMSA_id:5678 clone EKHO-15
2.28.1.8.1.1.2.7189 OTU 1 seq
prokMSA_id:33017 marine 
2.28.1.8.1.1.2.7224 OTU 1 seq
prokMSA_id:28284 Slope strain EI2 
2.28.1.8.1.1.2.7233 OTU 1 seq
prokMSA_id:26688 Roseobacter sp. isolate PRLISY03 
2.28.1.8.1.1.2.7263 OTU 1 seq
prokMSA_id:81687 Antarctic sea ice clone ANTXI/4_14-43 
2.28.1.8.1.1.2.7272 OTU 1 seq
prokMSA_id:45540 Ruegeria CtaxMed-39 
2.28.1.8.1.1.2.7329 OTU 1 seq
prokMSA_id:5662 Ruegeria atlantica str. WNA2
2.28.1.8.1.1.2.7350 OTU 2 seqs
prokMSA_id:42048 Hydrothermal vent strain AG33 
prokMSA_id:49056 ECS2 AB041272
2.28.1.8.1.1.2.7354 OTU 1 seq
prokMSA_id:22037 isolate HRV4# HpaAS2
2.28.1.8.1.1.2.7375 OTU 2 seqs
prokMSA_id:5670 Ruegeria algicola str. ML4 ATCC 51441
prokMSA_id:5671 Ruegeria algicola str. FF2 ATCC 51442
2.28.1.8.1.1.2.7460 OTU 1 seq
prokMSA_id:62731 alpha clone ML635J-2 
2.28.1.8.1.1.2.7466 OTU 1 seq
prokMSA_id:83188 Marine HP29w 
2.28.1.8.1.1.2.7476 OTU 1 seq
prokMSA_id:32029 Marine ALUS253_43 
2.28.1.8.1.1.2.7493 OTU 1 seq
prokMSA_id:81378 Roseobacter sp. ARK9990 
2.28.1.8.1.1.2.7590 OTU 1 seq
prokMSA_id:80030 Arctic sea ice ARK10109 
2.28.1.8.1.1.2.7630 OTU 1 seq
prokMSA_id:44621 ECS3 
2.28.1.8.1.1.2.7636 OTU 1 seq
prokMSA_id:52602 clone KS96 
2.28.1.8.1.1.3 ANB.HELIOTHERMUS_SUBGROUP 6 seqs
2.28.1.8.1.1.3.6661 OTU 2 seqs
prokMSA_id:75332 Methylarcula sp. BIO-24 isolate BIO-24
prokMSA_id:75890 Methylarcula sp. BIO-13 isolate BIO-13
2.28.1.8.1.1.3.7131 OTU 1 seq
prokMSA_id:5680 str. LFR
2.28.1.8.1.1.3.7282 OTU 3 seqs
prokMSA_id:5683 Antarctobacter heliothermus str. EL-219 DSM 11440
prokMSA_id:50247 Antarctobacter sp. 667-12 strain 667-12
prokMSA_id:73266 Marine ATAM173a_51 
2.28.1.8.1.1.5 OCT.ANTARCTICUS_SUBGROUP 83 seqs
2.28.1.8.1.1.5.6630 OTU 1 seq
prokMSA_id:46143 alpha 128-19L 
2.28.1.8.1.1.5.6654 OTU 1 seq
prokMSA_id:42895 alpha clone CD4D3 
2.28.1.8.1.1.5.6664 OTU 1 seq
prokMSA_id:5706 unnamed organism
2.28.1.8.1.1.5.6705 OTU 1 seq
prokMSA_id:5702 clone HstpL95
2.28.1.8.1.1.5.6714 OTU 1 seq
prokMSA_id:62503 Rhodobacter group clone PH-B13 
2.28.1.8.1.1.5.6723 OTU 1 seq
prokMSA_id:5709 clone EKHO-8
2.28.1.8.1.1.5.6751 OTU 1 seq
prokMSA_id:5711 clone BURTON-19
2.28.1.8.1.1.5.6764 OTU 1 seq
prokMSA_id:5713 clone BURTON-7
2.28.1.8.1.1.5.6769 OTU 1 seq
prokMSA_id:5715 Silicibacter pomeroyi strain DSS-3 
2.28.1.8.1.1.5.6772 OTU 4 seqs
prokMSA_id:29287 Jannaschia helgolandensis strain Hel 10 AJ438157
prokMSA_id:75300 Jannaschia helgolandensis isolate HEL-43 AJ534225
prokMSA_id:75353 Jannaschia helgolandensis isolate HEL-26 AJ534224
prokMSA_id:79743 clone BTM13 
2.28.1.8.1.1.5.6786 OTU 1 seq
prokMSA_id:50418 alpha 128-47L 
2.28.1.8.1.1.5.6805 OTU 1 seq
prokMSA_id:33574 Filamentous photosynthetic Fl90-32 
2.28.1.8.1.1.5.6818 OTU 1 seq
prokMSA_id:41605 alpha clone MERTZ_0CM_153 
2.28.1.8.1.1.5.6864 OTU 2 seqs
prokMSA_id:19627 marine alpha AS-34 
prokMSA_id:26286 marine alpha AS-35 
2.28.1.8.1.1.5.6866 OTU 1 seq
prokMSA_id:83098 Roseobacter sp. 4318-8/1 isolate 4318-8/1
2.28.1.8.1.1.5.6879 OTU 1 seq
prokMSA_id:22858 Alpha NW4327 
2.28.1.8.1.1.5.6883 OTU 6 seqs
prokMSA_id:5716 str. MBIC1876
prokMSA_id:5718 Agrobacterium meteori IAM 14464
prokMSA_id:43019 Alpha SOGA1 
prokMSA_id:46822 Alpha SOGA8 
prokMSA_id:49437 Alpha SOGA14 
prokMSA_id:51444 Alpha SOGA25 
2.28.1.8.1.1.5.6984 OTU 2 seqs
prokMSA_id:19540 alpha 128-41L 
prokMSA_id:41652 alpha 128-27L 
2.28.1.8.1.1.5.7045 OTU 2 seqs
prokMSA_id:5692 Roseobacter DSS-1 str. DSS-1
prokMSA_id:42922 Arctic seawater R7967 
2.28.1.8.1.1.5.7069 OTU 1 seq
prokMSA_id:61250 alpha isolate GRP21
2.28.1.8.1.1.5.7085 OTU 1 seq
prokMSA_id:5719 Silicibacter lacuscaerulensis str. ITI-1157
2.28.1.8.1.1.5.7093 OTU 1 seq
prokMSA_id:68668 alpha LTs-4 isolate LTs-4
2.28.1.8.1.1.5.7140 OTU 7 seqs
prokMSA_id:76234 Methylarcula sp. DT-12 isolate DT-12
prokMSA_id:80016 clone ARKCH2Br2-100 
prokMSA_id:80857 clone ARKDMS-62 AF468242
prokMSA_id:80873 clone ARKCH2Br2-28 AF468226
prokMSA_id:84473 Antarctic R-8904 strain R-8904
prokMSA_id:93357 Tanella salinilacus strain LMG 22002 AJ582229
prokMSA_id:94029 Tanella salinilacus strain LMG 22000 AJ582228
2.28.1.8.1.1.5.7160 OTU 1 seq
prokMSA_id:5694 clone EKHO-18
2.28.1.8.1.1.5.7158 OTU 1 seq
prokMSA_id:5691 Octadecabacter IC141 str. IC141
2.28.1.8.1.1.5.7162 OTU 1 seq
prokMSA_id:5695 Octadecabacter BURTON-33
2.28.1.8.1.1.5.7270 OTU 1 seq
prokMSA_id:54491 alpha RSHD3E4 
2.28.1.8.1.1.5.7293 OTU 1 seq
prokMSA_id:74722 alpha isolate TH1
2.28.1.8.1.1.5.7301 OTU 1 seq
prokMSA_id:5703 Roseobacter DSS-8 str. DSS-8
2.28.1.8.1.1.5.7429 OTU 4 seqs
prokMSA_id:26995 Ruegeria aff. gelatinovorans ch611 strain ch611
prokMSA_id:33660 Roseobacter sp. isolate PRLIST02 Y15339
prokMSA_id:33766 Roseobacter 253-16 isolate 253-16
prokMSA_id:63182 alpha isolate DGGE band A-9 AY117767
2.28.1.8.1.1.5.7432 OTU 6 seqs
prokMSA_id:17537 marine ZD0207 
prokMSA_id:41244 Roseobacter NAC11-7 
prokMSA_id:92383 alpha clone PLY-P2-54 AY354837
prokMSA_id:92494 alpha clone PLY-P2-3 AY354832
prokMSA_id:92539 alpha clone PLY-P2-1 AY354831
prokMSA_id:93014 alpha clone PLY-P2-45 AY354836
2.28.1.8.1.1.5.7527 OTU 1 seq
prokMSA_id:31063 alpha CTD56B 
2.28.1.8.1.1.5.7596 OTU 1 seq
prokMSA_id:86328 Rhodobacteraceae R11 
2.28.1.8.1.1.5.7602 OTU 25 seqs
prokMSA_id:5690 Octadecabacter antarcticus str. 307
prokMSA_id:5697 Octadecabacter arcticus str. 238
prokMSA_id:79813 Arctic sea ice ARK10175-1 
prokMSA_id:79937 Arctic sea ice associated ARK10126 
prokMSA_id:80122 Arctic sea ice ARK10249 AF468377
prokMSA_id:80348 Arctic sea ice ARK10073 AF468361
prokMSA_id:80399 clone ARKICE-158 
prokMSA_id:80544 Arctic sea ice ARK10285 
prokMSA_id:80593 Arctic sea ice ARK10090 
prokMSA_id:80710 Arctic sea ice ARK10176 
prokMSA_id:80714 Arctic sea ice ARK10092 
prokMSA_id:80723 Arctic sea ice ARK10026 
prokMSA_id:80827 Arctic sea ice ARK10099 
prokMSA_id:80855 clone ARKIA-135 
prokMSA_id:80968 Arctic sea ice ARK10029 AF468356
prokMSA_id:81030 Arctic sea ice ARK10197 
prokMSA_id:81031 Arctic sea ice ARK10081 
prokMSA_id:81135 Octadecabacter sp. ANT9190 
prokMSA_id:81431 Octadecabacter sp. ANT9237 
prokMSA_id:81453 Octadecabacter sp. ANT9191 
prokMSA_id:81601 Antarctic sea ice clone ANTXI/4_14-50 
prokMSA_id:82065 Octadecabacter sp. ANT9232 
prokMSA_id:82085 Octadecabacter sp. ANT9202 
prokMSA_id:82271 Octadecabacter sp. ANT9212 
prokMSA_id:82421 Octadecabacter sp. ANT9035 
2.28.1.8.1.1.6 ENVIRONMENTAL_CLONE_SAR83 1 seq
2.28.1.8.1.1.6.7214 OTU 1 seq
prokMSA_id:5726 Sargasso Sea clone SAR 83
2.28.1.8.1.1.8 ENVIRONMENTAL_CLONE_SAR122 1 seq
2.28.1.8.1.1.8.7217 OTU 1 seq
prokMSA_id:5728 clone SAR 122
2.28.1.8.1.2 PARACOCCUS_SUBGROUP 162 seqs
2.28.1.8.1.2.1 PAR.DENITRIFICANS_SUBGROUP 35 seqs
2.28.1.8.1.2.1.6669 OTU 1 seq
prokMSA_id:31561 Alpha S-N0-14A 
2.28.1.8.1.2.1.6682 OTU 3 seqs
prokMSA_id:5756 Paracoccus sp. str. MBIC3966
prokMSA_id:38672 Paracoccus zeaxanthinifaciens strain ATCC 21588 
prokMSA_id:41749 Paracoccus zeaxanthinifaciens strain R-1506 
2.28.1.8.1.2.1.7008 OTU 1 seq
prokMSA_id:86027 Paracoccus aminovorans isolate dPAO9 
2.28.1.8.1.2.1.7242 OTU 3 seqs
prokMSA_id:62730 alpha clone ML602J-43 
prokMSA_id:63841 alpha clone ML812M-6 
prokMSA_id:63844 alpha clone ML602M-13 
2.28.1.8.1.2.1.7262 OTU 16 seqs
prokMSA_id:5731 Paracoccus versutus IAM 12814
prokMSA_id:5732 Paracoccus versutus IAM 12815
prokMSA_id:5735 Paracoccus denitrificans LMG 4218
prokMSA_id:5742 Paracoccus denitrificans JCM 6892
prokMSA_id:5743 Paracoccus denitrificans IAM 12479
prokMSA_id:5744 Paracoccus KS1
prokMSA_id:5745 Paracoccus KS2
prokMSA_id:5746 Paracoccus KL1
prokMSA_id:5754 Paracoccus sp. str. B8B1
prokMSA_id:5755 Paracoccus sp. str. B8B2
prokMSA_id:21865 Paracoccus versutus 
prokMSA_id:34219 Paracoccus thiophilus strain AS001
prokMSA_id:34943 Paracoccus denitrificans strain DSM 2944
prokMSA_id:47659 Paracoccus sp. 4FB8 
prokMSA_id:75763 Paracoccus denitrificans isolate NKNIS 
prokMSA_id:77660 Paracoccus pantotrophus 
2.28.1.8.1.2.1.7266 OTU 1 seq
prokMSA_id:5736 clone EKHO-13
2.28.1.8.1.2.1.7268 OTU 1 seq
prokMSA_id:5737 Methyloarcula terricola str. h37 VKM B-2160
2.28.1.8.1.2.1.7351 OTU 1 seq
prokMSA_id:5753 str. ML-168a
2.28.1.8.1.2.1.7362 OTU 8 seqs
prokMSA_id:22206 Paracoccus yeeii strain G1212 
prokMSA_id:23110 Paracoccus yeeii strain G4878 
prokMSA_id:26594 Paracoccus yeeii strain G9205 
prokMSA_id:28217 Paracoccus yeeii strain G6446 
prokMSA_id:33902 Paracoccus yeeii strain H13 
prokMSA_id:44012 Paracoccus yeeii strain G6155 
prokMSA_id:46743 Paracoccus yeeii strain G3060 
prokMSA_id:52386 Paracoccus yeeii strain G1968 
2.28.1.8.1.2.2 PAR.AMINOPHILUS_SUBGROUP 23 seqs
2.28.1.8.1.2.2.6733 OTU 1 seq
prokMSA_id:5762 Methyloarcula marina str. h1 VKM B-2159
2.28.1.8.1.2.2.6949 OTU 1 seq
prokMSA_id:32853 Paracoccus seriniphila strain MBT-A4
2.28.1.8.1.2.2.6965 OTU 2 seqs
prokMSA_id:5758 Paracoccus aminophilus str. DM-15 JCM 7686
prokMSA_id:24498 Paracoccus aminophilus 
2.28.1.8.1.2.2.7040 OTU 10 seqs
prokMSA_id:5766 Paracoccus alcaliphilus str. TK 1015 JCM 7364
prokMSA_id:5769 Paracoccus MBIC4017 str. MBIC4017
prokMSA_id:5770 Paracoccus MBIC4018 str. MBIC4018
prokMSA_id:5771 Paracoccus marcusii str. ML-003
prokMSA_id:38102 Paracoccus alcaliphilus 
prokMSA_id:61950 Paracoccus-like sp. V4.BP.10 marine isolate
prokMSA_id:74886 Methylarcula sp. HEL-8 isolate HEL-8
prokMSA_id:76690 alpha clone Gitt-KF-3
prokMSA_id:78216 Paracoccus sp. TUT1021 AB098589
prokMSA_id:80137 Arctic sea ice associated ARK10006 
2.28.1.8.1.2.2.7125 OTU 4 seqs
prokMSA_id:5767 Paracoccus marcusii
prokMSA_id:5768 Paracoccus carotinifaciens str. E-396
prokMSA_id:5772 str. MBIC1143
prokMSA_id:61839 alpha clone CLi24 
2.28.1.8.1.2.2.7274 OTU 1 seq
prokMSA_id:5761 Paracoccus aminovorans str. DM-82 JCM 7685
2.28.1.8.1.2.2.7276 OTU 1 seq
prokMSA_id:5765 Paracoccus sp. str. MBIC3345 Y4
2.28.1.8.1.2.2.7297 OTU 1 seq
prokMSA_id:44392 Alpha ML6 strain ML6
2.28.1.8.1.2.2.7420 OTU 1 seq
prokMSA_id:26524 Paracoccus alcaliphilus strain KTC002
2.28.1.8.1.2.2.7515 OTU 1 seq
prokMSA_id:27188 Paracoccus kawasakiensis 
2.28.1.8.1.2.3 PAR.ALKENIFER_SUBGROUP 5 seqs
2.28.1.8.1.2.3.6797 OTU 1 seq
prokMSA_id:5779 Paracoccus kocurii str. B JCM 7684
2.28.1.8.1.2.3.7232 OTU 3 seqs
prokMSA_id:5776 Paracoccus solventivorans str. L1 DSM 6637
prokMSA_id:5777 Paracoccus solventivorans str. A686/1
prokMSA_id:47316 Paracoccus solventivorans 
2.28.1.8.1.2.3.7325 OTU 1 seq
prokMSA_id:5778 Paracoccus alkenifer str. A901/1 DSM 11593
2.28.1.8.1.2.4 RB.VELDKAMPII_SUBGROUP 7 seqs
2.28.1.8.1.2.4.6815 OTU 1 seq
prokMSA_id:5780 Rhodobacter veldkampii ATCC 35703
2.28.1.8.1.2.4.6816 OTU 1 seq
prokMSA_id:5781 Rhodobacter QSSC1-20 str. QSSC1-20
2.28.1.8.1.2.4.7288 OTU 4 seqs
prokMSA_id:38545 isolate HNS27# HpaNS1-3
prokMSA_id:47941 isolate HOS35# HpaBS
prokMSA_id:73475 isolate HNSM50
prokMSA_id:96829 Rhodobacter veldkampii isolate ISR010 Y14150
2.28.1.8.1.2.4.7373 OTU 1 seq
prokMSA_id:56159 Rhodobacter sp. AP-10 
2.28.1.8.1.2.5 STR.SW2_SUBGROUP 8 seqs
2.28.1.8.1.2.5.6820 OTU 1 seq
prokMSA_id:5783 str. SW2
2.28.1.8.1.2.5.6838 OTU 1 seq
prokMSA_id:5784 str. from Lake Gossenkoellesee
2.28.1.8.1.2.5.6842 OTU 1 seq
prokMSA_id:5785 str. from 400 mbsl of lake Baikal RUSSIA
2.28.1.8.1.2.5.7130 OTU 2 seqs
prokMSA_id:59349 clone HP1B64 
prokMSA_id:66953 Gram-negative MM 1 isolate MM 1
2.28.1.8.1.2.5.7330 OTU 1 seq
prokMSA_id:38152 Gram negative B3P-2 
2.28.1.8.1.2.5.7444 OTU 1 seq
prokMSA_id:39288 Gram negative B1G-1A 
2.28.1.8.1.2.5.7517 OTU 1 seq
prokMSA_id:34269 Gram negative W6P-1 
2.28.1.8.1.2.6 RB.SPHAEROIDES_SUBGROUP 13 seqs
2.28.1.8.1.2.6.312 OTU 1 seq
prokMSA_id:5789 Agrobacterium ferrugineum IAM 12616
2.28.1.8.1.2.6.6728 OTU 1 seq
prokMSA_id:46644 GR-WP33-45 clone GR-WP33-45
2.28.1.8.1.2.6.6771 OTU 1 seq
prokMSA_id:79922 clone:OHKB4.20
2.28.1.8.1.2.6.6882 OTU 1 seq
prokMSA_id:5793 Rhodobacter apigmentum
2.28.1.8.1.2.6.6880 OTU 1 seq
prokMSA_id:5792 Rubrimonas cliftonensis str. OCh317
2.28.1.8.1.2.6.7021 OTU 1 seq
prokMSA_id:21183 Rhodobacter sp. complete 
2.28.1.8.1.2.6.7049 OTU 1 seq
prokMSA_id:70088 Alpha 'ANG clone 1b' 
2.28.1.8.1.2.6.723 OTU 2 seqs
prokMSA_id:20873 Rhodobacter sp. U63934
prokMSA_id:74644 Rhodobacter sp
2.28.1.8.1.2.6.7513 OTU 1 seq
prokMSA_id:80728 Arctic sea ice ARK10036 
2.28.1.8.1.2.6.7536 OTU 1 seq
prokMSA_id:48409 GR-Sh1-107 clone GR-Sh1-107
2.28.1.8.1.2.6.7618 OTU 1 seq
prokMSA_id:49413 sludge A15b 
2.28.1.8.1.2.6.7650 OTU 1 seq
prokMSA_id:28407 SY6-29 
2.28.1.8.1.2.7 AMR.MACAUENSIS_SUBGROUP 26 seqs
2.28.1.8.1.2.7.6658 OTU 1 seq
prokMSA_id:35061 'halibut' 
2.28.1.8.1.2.7.6730 OTU 1 seq
prokMSA_id:35565 sludge A26 
2.28.1.8.1.2.7.6819 OTU 1 seq
prokMSA_id:33982 alpha MERTZ_0CM_210 
2.28.1.8.1.2.7.6939 OTU 2 seqs
prokMSA_id:18204 sludge A10 
prokMSA_id:49391 mle1-20 
2.28.1.8.1.2.7.7032 OTU 2 seqs
prokMSA_id:77913 alpha isolate Osrt
prokMSA_id:78270 Alpha A-col-R2A-4 isolate A-col-R2A-4
2.28.1.8.1.2.7.7047 OTU 3 seqs
prokMSA_id:5804 Amaricoccus kaplicensis str. Ben101 ACM 5099
prokMSA_id:5805 Tetracoccus cechii str. Italian
prokMSA_id:5806 Tetracoccus cechii str. Czech
2.28.1.8.1.2.7.7178 OTU 1 seq
prokMSA_id:5801 clone HstpL51
2.28.1.8.1.2.7.7180 OTU 1 seq
prokMSA_id:5803 Rhodobacter blasticus NCIMB 11576
2.28.1.8.1.2.7.7192 OTU 1 seq
prokMSA_id:5808 Amaricoccus tamworthensis str. Ben103 ACM 5097
2.28.1.8.1.2.7.7191 OTU 1 seq
prokMSA_id:5807 str. JTB359
2.28.1.8.1.2.7.7211 OTU 6 seqs
prokMSA_id:5809 str. NKB7. AB013259
prokMSA_id:5810 clone Sva0758
prokMSA_id:16977 alpha MERTZ_2CM_12 
prokMSA_id:42942 alpha clone:TYM--3 
prokMSA_id:77142 alpha clone ALIB-14 
prokMSA_id:83623 alpha clone ABBB-43 
2.28.1.8.1.2.7.7237 OTU 1 seq
prokMSA_id:58379 Rhodobacter group clone SBRT155 
2.28.1.8.1.2.7.7246 OTU 1 seq
prokMSA_id:54358 alpha MERTZ_0CM_310 
2.28.1.8.1.2.7.7346 OTU 1 seq
prokMSA_id:52539 alpha MERTZ_2CM_16 
2.28.1.8.1.2.7.7508 OTU 1 seq
prokMSA_id:86041 alpha clone FBP492 
2.28.1.8.1.2.7.7609 OTU 1 seq
prokMSA_id:5811 Amaricoccus macauensis str. Ben104 ACM 5096
2.28.1.8.1.2.7.7612 OTU 1 seq
prokMSA_id:5812 Amaricoccus veronensis str. Ben102 ACM 5098
2.28.1.8.1.2.8 RB.CAPSULATUS_SUBGROUP 45 seqs
2.28.1.8.1.2.8.6681 OTU 1 seq
prokMSA_id:17078 sludge A27 
2.28.1.8.1.2.8.6870 OTU 1 seq
prokMSA_id:71562 alpha clone DC5-50-1 
2.28.1.8.1.2.8.6979 OTU 3 seqs
prokMSA_id:22427 sludge A6 
prokMSA_id:34114 sludge H42 
prokMSA_id:40921 sludge S2 
2.28.1.8.1.2.8.6991 OTU 35 seqs
prokMSA_id:5788 Rhodobacter azotoformans str. KA25. D70846
prokMSA_id:5790 Rhodobacter azotoformans str. SA16. D70847
prokMSA_id:5791 Rhodobacter sphaeroides str. ATH 2.4.1 ATCC 17023 =. X53853
prokMSA_id:5795 Rhodobacter sphaeroides IFO 12203. D16425
prokMSA_id:5796 Rhodobacter sphaeroides str. ATH 2.4.1 ATCC 17023 =rrnC. X53
prokMSA_id:5797 Rhodobacter sphaeroides str. IL106
prokMSA_id:5798 Rhodobacter sphaeroides str. ATH 2.4.1 ATCC 17023 =rrnB. X53
prokMSA_id:5800 Rhodobacter blasticus ATCC 33485
prokMSA_id:5802 Rhodobacter TCRI 14 str. TCRI 14
prokMSA_id:5815 Rhodobacter capsulatus str. C5
prokMSA_id:5816 Rhodobacter TCRI 3 str. TCRI 3
prokMSA_id:5817 Rhodobacter TCRI 5 str. TCRI 5
prokMSA_id:5818 Rhodobacter TCRI str. TCRI 2
prokMSA_id:5820 Rhodobacter capsulatus str. ATH 2.3.1 ATCC 11166
prokMSA_id:5831 Rhodovulum sulfidophilum str. TW13. D16422
prokMSA_id:5832 Rhodovulum sulfidophilum str. W4 DSM 1374 . D16423
prokMSA_id:18225 Alpha S-N0-25B AB074724
prokMSA_id:22866 Rhodobacter sphaeroides KCTC 12085 
prokMSA_id:56072 Rhodobacter sp. PS9 
prokMSA_id:60360 Rhodovulum inexpectatum strain FRR-10T AF465833
prokMSA_id:60758 Rhodobacter sp. clone PSB-M-1 AY128090
prokMSA_id:61252 Paracoccus aminovorans isolate GP43 AJ505785
prokMSA_id:62339 Rhodovulum strictum 
prokMSA_id:64867 Paracoccus sp. L AJ412687
prokMSA_id:67718 Rhodobacter sp. NMR15 
prokMSA_id:67721 Rhodobacter gluconicum 
prokMSA_id:76833 MF_clone_11 AY159129
prokMSA_id:76860 MF_clone_54 AY159141
prokMSA_id:78323 Rhodovulum sp. AR2102 
prokMSA_id:83643 Rhodobacter sp. 2002-65602 
prokMSA_id:88947 Paracoccus sp. Ol18 plasmid pOL18 rrn operon complete AY3120
prokMSA_id:89581 Paracoccus sp. Ophe1 isolate 1018 AY325770
prokMSA_id:91577 K91 AY345456
prokMSA_id:93958 alpha- clone Gitt-GS-149 AJ582185
prokMSA_id:98295 Rhodobacter sp. Jip03 AB122032
2.28.1.8.1.2.8.7149 OTU 2 seqs
prokMSA_id:59350 clone HP1B71 
prokMSA_id:59351 clone HP1A30 
2.28.1.8.1.2.8.7308 OTU 1 seq
prokMSA_id:59348 clone HP1B39 
2.28.1.8.1.2.8.7358 OTU 1 seq
prokMSA_id:62868 Cf. Rhodobacter sp. Framboise 
2.28.1.8.1.2.8.7615 OTU 1 seq
prokMSA_id:5814 Rhodobacter capsulatus str. B10 ATCC 33303
2.28.1.8.2 RHODOVULUM_GROUP 31 seqs
2.28.1.8.2.1 RHV.ADRIATICUM_SUBGROUP 13 seqs
2.28.1.8.2.1.6675 OTU 5 seqs
prokMSA_id:5823 Rhodovulum sp. str. MB253
prokMSA_id:5825 Rhodovulum adriaticum DSM 2781
prokMSA_id:60395 Rhodobacter group LA38BS 
prokMSA_id:77962 Rhodovulum sp. AT2111 
prokMSA_id:78290 Rhodovulum sp. AT2114 
2.28.1.8.2.1.6923 OTU 6 seqs
prokMSA_id:75643 Jannaschia sp. DFL-12 isolate DFL-12
prokMSA_id:76596 Jannaschia sp. DFL-36 isolate DFL-36 AJ534220
prokMSA_id:76848 Jannaschia sp. DFL-27 isolate DFL-27
prokMSA_id:76961 Jannaschia sp. DFL-30 isolate DFL-30
prokMSA_id:77178 Jannaschia sp. DFL-38 isolate DFL-38
prokMSA_id:77237 Jannaschia sp. DFL-16 isolate DFL-16
2.28.1.8.2.1.7648 OTU 1 seq
prokMSA_id:35622 Marine ATAM407_62 
2.28.1.8.2.1.7654 OTU 1 seq
prokMSA_id:5822 Rhodovulum robiginosum str. N2
2.28.1.8.2.2 RHV.SULFIDOPHILUM_SUBGROUP 18 seqs
2.28.1.8.2.2.6659 OTU 1 seq
prokMSA_id:5839 str. BD1-17
2.28.1.8.2.2.6709 OTU 1 seq
prokMSA_id:33175 alpha Arctic96B-9 
2.28.1.8.2.2.6937 OTU 2 seqs
prokMSA_id:19381 clone 49523 AF097818
prokMSA_id:81430 alpha clone P55-GM4R-t 
2.28.1.8.2.2.7025 OTU 1 seq
prokMSA_id:79141 clone ZA2526c 
2.28.1.8.2.2.7341 OTU 1 seq
prokMSA_id:62332 Rhodovulum sp. CP-10 
2.28.1.8.2.2.7345 OTU 6 seqs
prokMSA_id:5834 Rhodovulum sulfidophilum str. TW13
prokMSA_id:5835 Rhodovulum sulfidophilum str. W-1S FERM P-15320
prokMSA_id:5836 Rhodovulum sulfidophilum str. W12 DSM 2351
prokMSA_id:5838 Rhodovulum sp. str. MB263
prokMSA_id:5840 Rhodovulum sp. str. MB260
prokMSA_id:60362 Rhodobacter group PH33 
2.28.1.8.2.2.7471 OTU 1 seq
prokMSA_id:60184 clone TK03
2.28.1.8.2.2.7524 OTU 1 seq
prokMSA_id:5829 Rhodovulum euryhalinum str. KA-65 DSM 4868
2.28.1.8.2.2.7523 OTU 1 seq
prokMSA_id:5828 Rhodovulum euryhalinum str. KA-65 DSM 4868
2.28.1.8.2.2.7542 OTU 1 seq
prokMSA_id:5830 Rhodovulum strictum str. MB-G2
2.28.1.8.2.2.7657 OTU 1 seq
prokMSA_id:5827 Rhodovulum EKHO-11
2.28.1.8.2.2.7656 OTU 1 seq
prokMSA_id:5826 Rhodovulum iodosum str. N1
2.28.1.8.3 HYPHOMONAS_GROUP 53 seqs
2.28.1.8.3.1 CAU.HALOBACTEROIDES_SUBGROUP 27 seqs
2.28.1.8.3.1.6688 OTU 1 seq
prokMSA_id:5846 Maricaulis BURTON-39
2.28.1.8.3.1.6894 OTU 1 seq
prokMSA_id:5853 Maricaulis sp. strain MCS25
2.28.1.8.3.1.7015 OTU 1 seq
prokMSA_id:38570 clone KS29 
2.28.1.8.3.1.7034 OTU 1 seq
prokMSA_id:68661 Caulobacter sp. WRs-1 isolate WRs-1
2.28.1.8.3.1.7068 OTU 3 seqs
prokMSA_id:18991 Marine SCRIPPS_423 AF359547
prokMSA_id:24031 Maricaulis sp. clone MERTZ_0CM_265 AF425757
prokMSA_id:61139 Alpha MGP-1 
2.28.1.8.3.1.7241 OTU 12 seqs
prokMSA_id:5841 Caulobacter maris ATCC 15268
prokMSA_id:5842 Caulobacter sp. str. MCS10. M83807
prokMSA_id:5845 Caulobacter halobacteroides ATCC 15269
prokMSA_id:5848 NCIMB 2022. AB008849
prokMSA_id:5849 NCIMB 2209. AB008850
prokMSA_id:5851 Maricaulis MCS11 str. MCS11. AJ227805
prokMSA_id:5855 Maricaulis MCS28 str. MCS28. AJ227810
prokMSA_id:27292 Maricaulis sp. MCS31 strain MCS31
prokMSA_id:32951 Maricaulis sp. MCS30 strain MCS30
prokMSA_id:33484 Maricaulis maris strain ATCC 15269 AJ227803
prokMSA_id:49200 Maricaulis maris strain ATCC 15268 AJ227802
prokMSA_id:49396 Maricaulis sp. MCS10 strain MCS10 AJ301664
2.28.1.8.3.1.7386 OTU 1 seq
prokMSA_id:25389 Alpha MC-4 
2.28.1.8.3.1.7397 OTU 2 seqs
prokMSA_id:5850 Maricaulis MCS06 str. MCS06
prokMSA_id:5852 Maricaulis MCS18 str. MCS18
2.28.1.8.3.1.7584 OTU 4 seqs
prokMSA_id:5854 Maricaulis sp. strain MCS26
prokMSA_id:26948 Maricaulis virginensis strain VC5
prokMSA_id:60393 Hyphomonas group LA49 
prokMSA_id:72693 Caulobacter sp. JP68 AY007678
2.28.1.8.3.1.7637 OTU 1 seq
prokMSA_id:52259 Maricaulis sp. kbc07 
2.28.1.8.3.2 HYM.JANNASCHIANA_SUBGROUP 26 seqs
2.28.1.8.3.2.6632 OTU 1 seq
prokMSA_id:43442 Hirschia baltica strain DSM 5838T
2.28.1.8.3.2.6647 OTU 1 seq
prokMSA_id:40367 alpha clone SM2C07 
2.28.1.8.3.2.6742 OTU 1 seq
prokMSA_id:5863 Caulobacter MCS23 str. MCS23
2.28.1.8.3.2.6743 OTU 1 seq
prokMSA_id:5864 Hyphomonas polymorpha DSM 2665
2.28.1.8.3.2.7073 OTU 3 seqs
prokMSA_id:5861 clone HstpL7
prokMSA_id:5873 clone HstpL3
prokMSA_id:5874 clone HstpL6
2.28.1.8.3.2.7084 OTU 12 seqs
prokMSA_id:5859 Hyphomonas oceanitis str. SCH89 IFAM 1325 . AF082797
prokMSA_id:5870 Hyphomonas rosenbergii str. VP-6
prokMSA_id:5871 Hyphomonas polymorpha str. Pr-727
prokMSA_id:5876 Hyphomonas hirschiana str. VP-5 DSM 5152
prokMSA_id:5877 Hyphomonas neptunium str. LE670 IFAM LE670
prokMSA_id:45671 Marine SCRIPPS_739 
prokMSA_id:83503 Marine arctic deep-sea HG12 
prokMSA_id:84176 Marine arctic deep-sea HB10 AJ557862
prokMSA_id:85403 Marine arctic deep-sea FE9 AJ557859
prokMSA_id:85490 Marine arctic deep-sea FH7 AJ557857
prokMSA_id:86059 Marine arctic deep-sea HH9 
prokMSA_id:86459 Marine arctic deep-sea HA12 
2.28.1.8.3.2.7485 OTU 6 seqs
prokMSA_id:5858 Hyphomonas jannaschiana str. VP-1 ATCC 33882. M83806
prokMSA_id:5860 Hyphomonas jannaschiana str. VP-2 DSM 5153
prokMSA_id:5865 Hyphomonas jannaschiana str. VP-2 ATCC 33883
prokMSA_id:5866 Hyphomonas adhaerens str. MHS-3
prokMSA_id:5872 Hyphomonas jannaschiana str. VP-1
prokMSA_id:81308 clone KM82 
2.28.1.8.3.2.7649 OTU 1 seq
prokMSA_id:5867 Hyphomonas johnsonii str. MHS-2
2.28.1.8.4 ENVIRONMENTAL_CLONE_SAR102 1 seq
2.28.1.8.4.6837 OTU 1 seq
prokMSA_id:5882 Sargasso Sea clone SAR 102
2.28.1.8.5 RICKETTSIA_AND_OTHERS 346 seqs
2.28.1.8.5.3 ENVIRONMENTAL_CLONE_PLY43_SUBGROUP 88 seqs
2.28.1.8.5.3.6678 OTU 1 seq
prokMSA_id:30286 alpha 33-FL82B98 
2.28.1.8.5.3.6735 OTU 19 seqs
prokMSA_id:5889 clone PLY43
prokMSA_id:5898 clone SAR193
prokMSA_id:23331 alpha clone Arctic95A-16 
prokMSA_id:33310 alpha clone Arctic96B-10 
prokMSA_id:33797 alpha clone Arctic96A-20 
prokMSA_id:40239 coastal Alaskan Arctic AWS98-19a 
prokMSA_id:40986 alpha clone Arctic96B-3 
prokMSA_id:43576 alpha clone Arctic97C-1 
prokMSA_id:53945 marine alpha clone M7-400-2 ; -23S intergenic spacer region 
prokMSA_id:61204 Pelagibacter ubique strain HTCC1002 ; -23S intergenic spacer
prokMSA_id:61205 Pelagibacter ubique strain HTCC1062 ; -23S intergenic spacer
prokMSA_id:64906 alpha pT-215R AY095873
prokMSA_id:68977 alpha MB13H04 ; tRNA-Ile and tRNA-Ala genes complete ; and 2
prokMSA_id:68985 alpha MB11E07 ; tRNA-Ile and tRNA-Ala genes complete ; and 2
prokMSA_id:79196 clone ZA3911c 
prokMSA_id:79390 clone ZA3320c 
prokMSA_id:82782 Bacteroidetes clone 3G9 
prokMSA_id:84240 Bacteroidetes clone C35 
prokMSA_id:86470 Bacteroidetes clone 1A3 
2.28.1.8.5.3.6754 OTU 1 seq
prokMSA_id:54657 marine alpha clone M3-450-1 ; -23S intergenic spacer region 
2.28.1.8.5.3.6763 OTU 1 seq
prokMSA_id:34081 alpha kpj28f 
2.28.1.8.5.3.6788 OTU 4 seqs
prokMSA_id:19573 alpha clone Arctic96B-22 AF353229
prokMSA_id:35677 alpha clone GOBB3-CL243 
prokMSA_id:50807 alpha clone Arctic96A-7 AF353226
prokMSA_id:88223 Alpha SKA48 AY317115
2.28.1.8.5.3.6811 OTU 2 seqs
prokMSA_id:34714 marine p712-15 U81532
prokMSA_id:68975 alpha MB21A02 ; tRNA-Ile and tRNA-Ala genes complete ; and 2
2.28.1.8.5.3.6825 OTU 1 seq
prokMSA_id:53064 marine alpha clone M3-450-5 ; -23S intergenic spacer region 
2.28.1.8.5.3.6884 OTU 1 seq
prokMSA_id:53491 marine alpha clone M3-450-4 ; -23S intergenic spacer region 
2.28.1.8.5.3.6911 OTU 1 seq
prokMSA_id:38559 alpha 33-PA124B98 
2.28.1.8.5.3.6933 OTU 4 seqs
prokMSA_id:31774 freshwater LD12 Z99997
prokMSA_id:52131 clone HTH6 AF418965
prokMSA_id:55574 alpha clone DC8-48-1 AY145598
prokMSA_id:85388 alpha clone TLM01/TLMdgge14 
2.28.1.8.5.3.7043 OTU 29 seqs
prokMSA_id:5901 clone SAR203
prokMSA_id:22763 alpha clone Arctic95D-8 
prokMSA_id:28898 alpha Arctic96BD-18 AF355034
prokMSA_id:37410 alpha ARCT1-56 AF440726
prokMSA_id:38403 alpha clone Arctic97B-5 
prokMSA_id:49361 alpha MB13E08 AY033327
prokMSA_id:52749 alpha clone Arctic95C-7 
prokMSA_id:52927 marine alpha clone M3-150-3 ; -23S intergenic spacer region 
prokMSA_id:52960 marine alpha clone A2-021-5 ; -23S intergenic spacer region 
prokMSA_id:53045 marine alpha clone M3-050-10 ; -23S intergenic spacer region
prokMSA_id:53061 marine alpha clone A2-021-4 ; -23S intergenic spacer region 
prokMSA_id:53077 marine alpha clone A2-021-1 ; -23S intergenic spacer region 
prokMSA_id:53187 marine alpha clone M3-050-7 ; -23S intergenic spacer region 
prokMSA_id:53603 marine alpha clone M3-150-5 ; -23S intergenic spacer region 
prokMSA_id:53959 marine alpha clone M7-400-1 ; -23S intergenic spacer region 
prokMSA_id:54108 marine alpha clone A1-010-1 ; -23S intergenic spacer region 
prokMSA_id:54269 marine alpha clone M3-450-2 ; -23S intergenic spacer region 
prokMSA_id:54805 marine alpha clone M3-450-3 ; -23S intergenic spacer region 
prokMSA_id:64899 alpha pT-410 AY095881
prokMSA_id:64998 alpha SH-200R AY095907
prokMSA_id:65024 alpha ARCT2-10 AY095824
prokMSA_id:65123 alpha OR-118 AY095687
prokMSA_id:65137 alpha OS2K-21 AY095669
prokMSA_id:65193 alpha WR-33 AY095565
prokMSA_id:65196 alpha WR-30 AY095562
prokMSA_id:65201 alpha WR-23 AY095557
prokMSA_id:77856 clone s77 AY171341
prokMSA_id:80272 alpha clone WCPAP18 AY220722
prokMSA_id:92826 alpha clone PLY-P1-114 AY354830
2.28.1.8.5.3.7104 OTU 1 seq
prokMSA_id:54994 marine alpha clone M7-400-3 ; -23S intergenic spacer region 
2.28.1.8.5.3.7122 OTU 1 seq
prokMSA_id:5897 clone OM155
2.28.1.8.5.3.7142 OTU 1 seq
prokMSA_id:18749 clone CTD40B 
2.28.1.8.5.3.7203 OTU 1 seq
prokMSA_id:24388 alpha clone Arctic96AD-8 
2.28.1.8.5.3.7206 OTU 1 seq
prokMSA_id:5903 clone SAR220
2.28.1.8.5.3.7210 OTU 1 seq
prokMSA_id:5902 clone SAR211
2.28.1.8.5.3.7258 OTU 1 seq
prokMSA_id:54614 marine alpha clone B-015-5 ; -23S intergenic spacer region c
2.28.1.8.5.3.7365 OTU 1 seq
prokMSA_id:39117 alpha CTD6B 
2.28.1.8.5.3.7376 OTU 8 seqs
prokMSA_id:25036 alpha SUR-FREE-2 AF114651
prokMSA_id:30604 ECS18 AB041288
prokMSA_id:36382 marine ZD0410 
prokMSA_id:48485 alpha clone Arctic95B-1 
prokMSA_id:63102 clone MB-C2-128 
prokMSA_id:68988 alpha MB11D08 ; tRNA-Ile and tRNA-Ala genes complete ; and 2
prokMSA_id:68990 alpha MB11B07 ; tRNA-Ile and tRNA-Ala genes complete ; and 2
prokMSA_id:70277 alpha SUR-FREE-3 AF114645
2.28.1.8.5.3.7421 OTU 1 seq
prokMSA_id:54561 marine alpha clone M3-150-4 ; -23S intergenic spacer region 
2.28.1.8.5.3.7504 OTU 1 seq
prokMSA_id:60628 alpha clone AEGEAN_233 
2.28.1.8.5.3.7541 OTU 1 seq
prokMSA_id:49399 alpha 33-PA19B98 
2.28.1.8.5.3.7554 OTU 1 seq
prokMSA_id:54935 marine alpha clone M2-025-1 ; -23S intergenic spacer region 
2.28.1.8.5.3.7579 OTU 1 seq
prokMSA_id:31458 alpha clone Arctic96B-6 
2.28.1.8.5.3.7592 OTU 1 seq
prokMSA_id:68982 alpha MB12A07 ; tRNA-Ile and tRNA-Ala genes complete ; and 2
2.28.1.8.5.3.7608 OTU 1 seq
prokMSA_id:5904 clone SAR241
2.28.1.8.5.3.7633 OTU 1 seq
prokMSA_id:39904 alpha CTD26B 
2.28.1.8.5.4 HOLOSPORA_SUBGROUP 11 seqs
2.28.1.8.5.4.6643 OTU 1 seq
prokMSA_id:5920 clone BURTON-1
2.28.1.8.5.4.6646 OTU 1 seq
prokMSA_id:5921 unnamed organism
2.28.1.8.5.4.6677 OTU 2 seqs
prokMSA_id:40401 Endosymbiont of Acanthamoeba sp. UWET39 
prokMSA_id:64551 Endosymbiont of Acanthamoeba sp. TUMK-23 
2.28.1.8.5.4.6793 OTU 1 seq
prokMSA_id:44738 Green Bay ferromanganous micronodule MND8 
2.28.1.8.5.4.7010 OTU 1 seq
prokMSA_id:74136 alpha clone 10B6
2.28.1.8.5.4.7094 OTU 1 seq
prokMSA_id:78256 alpha clone:Rs-M08
2.28.1.8.5.4.7240 OTU 1 seq
prokMSA_id:48275 clone t005 
2.28.1.8.5.4.7465 OTU 1 seq
prokMSA_id:79042 isolate 4x29 
2.28.1.8.5.4.7474 OTU 1 seq
prokMSA_id:5919 clone WCHA1-65
2.28.1.8.5.4.7651 OTU 1 seq
prokMSA_id:5918 Caedibacter caryophila str. 221
2.28.1.8.5.5 RICKETTSIA_SUBGROUP 74 seqs
2.28.1.8.5.5.6639 OTU 2 seqs
prokMSA_id:81215 clone Hw191 AF497582
prokMSA_id:82176 clone Hw124 
2.28.1.8.5.5.6712 OTU 1 seq
prokMSA_id:66159 Rickettsiales 'Montezuma' 
2.28.1.8.5.5.6724 OTU 1 seq
prokMSA_id:5942 str. BD1-10
2.28.1.8.5.5.6809 OTU 27 seqs
prokMSA_id:5925 Rickettsia conorii str. IIT-586
prokMSA_id:5926 Rickettsia africae str. ESF-5; Z9-Hu
prokMSA_id:5927 Rickettsia sp. str. S
prokMSA_id:5928 Rickettsia sp. str. Bar 29
prokMSA_id:5934 Rickettsia slovaca str. 13-B
prokMSA_id:5936 Rickettsia sp. str. A-167
prokMSA_id:5937 Rickettsia conorii str. Indian Tick Typhus rickettsia
prokMSA_id:5945 Rickettsia sp. str. ISTT CDC1
prokMSA_id:5946 Rickettsia massiliae str. Mtu1
prokMSA_id:5948 Rickettsia japonica str. YM
prokMSA_id:5954 Rickettsia rickettsii str. Sawtooth
prokMSA_id:5956 Rickettsia sibirica str. 246
prokMSA_id:5957 Rickettsia sp. str. TT-118
prokMSA_id:5958 Rickettsia honei str. RB
prokMSA_id:5963 Rickettsia honei str. JC
prokMSA_id:5965 Rickettsia massiliae str. GS
prokMSA_id:5967 Rickettsia rickettsii str. R Bitterroot
prokMSA_id:5970 Rickettsia rhipicephali str. 3-7-6
prokMSA_id:5971 Rickettsia conorii str. Moroccan
prokMSA_id:5975 Rickettsia sibirica ATCC VR151
prokMSA_id:5976 Rickettsia parkeri str. Maculatum 20
prokMSA_id:26925 Rickettsia sp. DnS28 strain DnS28 
prokMSA_id:27672 Rickettsia sp. DnS14 strain DnS14 
prokMSA_id:37110 Rickettsia heilongjiangii 
prokMSA_id:45313 Rickettsia sp. RpA4 strain RpA4 
prokMSA_id:65330 Rickettsia sp. DT1 
prokMSA_id:75477 Rickettsia sp. JL-02 
2.28.1.8.5.5.6831 OTU 1 seq
prokMSA_id:63333 clone RCP2-17 
2.28.1.8.5.5.6886 OTU 2 seqs
prokMSA_id:5951 unnamed organism
prokMSA_id:5966 unnamed organism
2.28.1.8.5.5.6947 OTU 1 seq
prokMSA_id:77922 alpha clone:Rs-B60
2.28.1.8.5.5.6983 OTU 1 seq
prokMSA_id:26167 alpha kpa92 
2.28.1.8.5.5.6988 OTU 1 seq
prokMSA_id:5952 Rickettsia sp
2.28.1.8.5.5.7114 OTU 1 seq
prokMSA_id:5924 Rickettsia prowazekii str. Breinl ATCC VR-142 alpha purple
2.28.1.8.5.5.7156 OTU 1 seq
prokMSA_id:78393 alpha clone:Rs-M62
2.28.1.8.5.5.7234 OTU 1 seq
prokMSA_id:5960 Rickettsia typhi str. Wilmington
2.28.1.8.5.5.7321 OTU 2 seqs
prokMSA_id:39764 Rickettsia endosymbiont of Hemicrepsis marginata 
prokMSA_id:52394 Rickettsia endosymbiont of Torix tagoi 
2.28.1.8.5.5.7556 OTU 30 seqs
prokMSA_id:5922 Rickettsia sp
prokMSA_id:5923 Rickettsia australis str. Phillips
prokMSA_id:5929 Rickettsia sp
prokMSA_id:5930 Rickettsia aeschlimanni str. Mc16
prokMSA_id:5932 Rickettsia typhi str. Wilmington
prokMSA_id:5935 Rickettsia montana str. Ohio 83-441
prokMSA_id:5938 Rickettsia helvetica str. C9P9
prokMSA_id:5939 Rickettsia typhi str. Wilmington
prokMSA_id:5940 Rickettsia amblyommii str. MO 85-1084
prokMSA_id:5941 Rickettsia canadensis str. 2678
prokMSA_id:5943 Rickettsia akari str. MK Kaplan
prokMSA_id:5944 Rickettsia rhipicephali
prokMSA_id:5947 Rickettsia australis str. RHS
prokMSA_id:5949 Rickettsia sp. str. PAR
prokMSA_id:5950 Rickettsia bellii str. strains 369-C and G2D42
prokMSA_id:5953 Rickettsia parkeri str. Maculatum 20
prokMSA_id:5959 Rickettsia australis str. Phillips
prokMSA_id:5961 Rickettsia bellii str. 369L42-1
prokMSA_id:5962 Rickettsia sp. str. Puerto Rico
prokMSA_id:5964 Rickettsia sp. str. ELB agent
prokMSA_id:5968 Rickettsia canadensis str. McKeil
prokMSA_id:5973 Rickettsia montana ATCC VR-611
prokMSA_id:19942 Rickettsia sp. IRS4 
prokMSA_id:28211 Rickettsia sp. BJ-90 
prokMSA_id:49155 Rickettsia sp. IRS3 
prokMSA_id:55503 Rickettsia sp. IP1 AF394904
prokMSA_id:65324 Rickettsia sp. IO1 
prokMSA_id:65325 Rickettsia sp. IM1 AF394905
prokMSA_id:65333 Rickettsia sp. AT1 
prokMSA_id:84326 Candidatus Rickettsia tarasevichiae 
2.28.1.8.5.5.7552 OTU 1 seq
prokMSA_id:35350 alpha clone SM1B06 
2.28.1.8.5.5.7622 OTU 1 seq
prokMSA_id:43432 Haplosporidium sp. endosymbiont isolate AbFoot
2.28.1.8.5.6 ORIENTIA_SUBGROUP 17 seqs
2.28.1.8.5.6.7367 OTU 17 seqs
prokMSA_id:5977 Orientia tsutsugamushi str. Kawasaki
prokMSA_id:5978 Orientia tsutsugamushi str. Shimokoshi
prokMSA_id:5979 Orientia tsutsugamushi str. Kato
prokMSA_id:5980 Orientia tsutsugamushi str. Kato
prokMSA_id:5981 Orientia tsutsugamushi str. Karp
prokMSA_id:5982 Orientia tsutsugamushi str. Litchfield
prokMSA_id:5983 Orientia tsutsugamushi str. Karp
prokMSA_id:5984 Orientia tsutsugamushi str. Kuroki
prokMSA_id:5985 Orientia tsutsugamushi str. Gilliam
prokMSA_id:5986 Orientia tsutsugamushi str. Gilliam
prokMSA_id:5987 Orientia tsutsugamushi str. Gilliam
prokMSA_id:71790 Rickettsia tsutsugamushi strain Kato D38624
prokMSA_id:72018 Rickettsia tsutsugamushi strain Shimokoshi D38627
prokMSA_id:72291 Rickettsia tsutsugamushi strain Kawasaki D38625
prokMSA_id:72689 Rickettsia tsutsugamushi strain Gilliam D38622
prokMSA_id:72798 Rickettsia tsutsugamushi strain Karp D38623
prokMSA_id:73599 Rickettsia tsutsugamushi strain Kuroki D38626
2.28.1.8.5.8 EHR.RISTICII_SUBGROUP 19 seqs
2.28.1.8.5.8.7305 OTU 16 seqs
prokMSA_id:5996 Ehrlichia risticii str. Illinois ATCC VR-986 alpha purple
prokMSA_id:5998 Ehrlichia risticii
prokMSA_id:6001 Ehrlichia risticii str. Kentucky isolate
prokMSA_id:6003 Ehrlichia risticii
prokMSA_id:6004 Ehrlichia risticii
prokMSA_id:6005 Ehrlichia risticii str. SHSN-1
prokMSA_id:6006 Ehrlichia risticii str. SHSN-2
prokMSA_id:6007 Ehrlichia sp
prokMSA_id:6008 Ehrlichia risticii str. Ohio isolate 081
prokMSA_id:6011 Ehrlichia sennetsu str. 11908
prokMSA_id:6012 Ehrlichia sennetsu str. Miyayama
prokMSA_id:24883 Ehrlichia risticii isolate S22 AY005439
prokMSA_id:31250 Ehrlichia risticii isolate S6 
prokMSA_id:33480 Ehrlichia risticii from Caddisfly larvae 
prokMSA_id:67336 Ehrlichia risticii from horse 1 AF380257
prokMSA_id:67337 Ehrlichia risticii from horse 2 AF380258
2.28.1.8.5.8.7304 OTU 1 seq
prokMSA_id:17901 Ehrlichia sp. 'trout isolate' 
2.28.1.8.5.8.7434 OTU 2 seqs
prokMSA_id:6002 str. WSA
prokMSA_id:6010 Agent of withering syndrome in abalone AF133090
2.28.1.8.5.9 EHRLICHIA_SUBGROUP 79 seqs
2.28.1.8.5.9.1 EHR.CANIS_SUBGROUP 42 seqs
2.28.1.8.5.9.1.6865 OTU 4 seqs
prokMSA_id:6025 unnamed organism
prokMSA_id:59553 Ehrlichia sp. 'Rattus strain' 
prokMSA_id:63883 Ehrlichia-like sp. TK4456 
prokMSA_id:63884 Ehrlichia sp. IS58 
2.28.1.8.5.9.1.7031 OTU 38 seqs
prokMSA_id:6014 Ehrlichia chaffeensis str. 91HE17. U23503
prokMSA_id:6015 Ehrlichia chaffeensis str. Sapulpa. U60476
prokMSA_id:6016 Ehrlichia chaffeensis str. Jax. U86664
prokMSA_id:6017 Ehrlichia chaffeensis str. St. Vincent. U86665
prokMSA_id:6018 Ehrlichia chaffeensis complete 
prokMSA_id:6019 Ehrlichia canis str. Oklahoma
prokMSA_id:6022 Ehrlichia canis str. Gzh982
prokMSA_id:6023 Ehrlichia sp. str. Germishuys
prokMSA_id:6024 Cowdria ruminantium str. Crystal Springs Zimbabwe isolate
prokMSA_id:6026 Ehrlichia ewingii str. Stillwater
prokMSA_id:6027 Ehrlichia ewingii str. 95E9-TS
prokMSA_id:6028 Ehrlichia muris str. AS145 ATCC VR-1411
prokMSA_id:6030 Ehrlichia muris str. I268
prokMSA_id:6031 Ehrlichia muris str. NA1
prokMSA_id:6032 Ehrlichia chaffeensis str. Arkansas
prokMSA_id:6033 Ehrlichia canis str. Florida
prokMSA_id:6034 Cowdria ruminantium str. Mara 87/7
prokMSA_id:6035 Cowdria ruminantium str. Omatjenne
prokMSA_id:6036 Cowdria ruminantium str. Ball3
prokMSA_id:6037 Cowdria ruminantium str. d from Senegal stock
prokMSA_id:6038 Ehrlichia canis str. 611
prokMSA_id:16712 Cowdria ruminantium Porto Henrique 
prokMSA_id:19195 Ehrlichia chaffeensis strain Arkansas ; and succinate dehydr
prokMSA_id:24968 Ehrlichia sp. ERm58 AF311967
prokMSA_id:30672 Ehrlichia sp. HI-2000 
prokMSA_id:32463 Ehrlichia canis isolate VHE AF373612
prokMSA_id:36711 Ehrlichia sp. HF565 
prokMSA_id:38150 Ehrlichia ovina 
prokMSA_id:38268 Ehrlichia canis isolate VDE AF373613
prokMSA_id:40434 Ehrlichia sp. Anan 
prokMSA_id:41424 Ehrlichia sp. Tibet 
prokMSA_id:48642 Cowdria sp. 'South African canine' 
prokMSA_id:50091 Cowdria ruminantium Bela Vista AF318022
prokMSA_id:70749 Ehrlichia sp. EHt224 
prokMSA_id:72979 Cowdria ruminantium 
prokMSA_id:74141 Cowdria ruminantium 
prokMSA_id:82252 Ehrlichia sp. EBm52 AF497581
prokMSA_id:94201 Ehrlichia canis strain Kagoshima 1 AF536827
2.28.1.8.5.9.2 EHR.PHAGOCYTOPHILA_SUBGROUP 37 seqs
2.28.1.8.5.9.2.6699 OTU 1 seq
prokMSA_id:6047 unnamed organism
2.28.1.8.5.9.2.6890 OTU 2 seqs
prokMSA_id:6040 Ehrlichia bovis
prokMSA_id:74038 Ehrlichia bovis 
2.28.1.8.5.9.2.6975 OTU 9 seqs
prokMSA_id:6054 Ehrlichia sp. str. rosa
prokMSA_id:6058 Ehrlichia sp. str. Swiss horse 1
prokMSA_id:6059 Ehrlichia sp
prokMSA_id:6069 Ehrlichia equi str. CASOLJ
prokMSA_id:6071 Ehrlichia equi str. CASITL
prokMSA_id:6073 Ehrlichia sp
prokMSA_id:6074 Ehrlichia equi
prokMSA_id:25787 Ehrlichia sp. RND-1 
prokMSA_id:49397 Ehrlichia sp. 'LGE agent' 
2.28.1.8.5.9.2.7083 OTU 18 seqs
prokMSA_id:6039 Anaplasma marginale
prokMSA_id:18751 Anaplasma ovis strain Idaho 
prokMSA_id:23009 Anaplasma marginale strain Florida AF309867
prokMSA_id:25427 Anaplasma centrale 
prokMSA_id:28040 Anaplasma marginale strain Virginia AF309866
prokMSA_id:28557 Anaplasma centrale 
prokMSA_id:29417 Anaplasma centrale strain Israel vaccine 
prokMSA_id:30827 Anaplasma marginale 
prokMSA_id:44706 Anaplasma marginale strain South Idaho 
prokMSA_id:50430 Anaplasma ovis 
prokMSA_id:56843 Aegyptianella pullorum 
prokMSA_id:58998 Anaplasma marginale 
prokMSA_id:79130 Anaplasma marginale isolate tailed from Israel 
prokMSA_id:79178 Anaplasma marginale strain F12 from Australia 
prokMSA_id:79180 Anaplasma marginale from South Africa from black wildebeest 
prokMSA_id:79361 Anaplasma marginale isolate Eland from South Africa 
prokMSA_id:79444 Anaplasma centrale strain vaccine from Australia 
prokMSA_id:79581 Anaplasma marginale strain Veld from South Africa 
2.28.1.8.5.9.2.7091 OTU 6 seqs
prokMSA_id:6041 Ehrlichia platys
prokMSA_id:6042 Ehrlichia platys str. Gzh981
prokMSA_id:6048 Ehrlichia sp. str. Omatjenne
prokMSA_id:18302 Ehrlichia platys 
prokMSA_id:33737 Ehrlichia sp. Bom Pastor 
prokMSA_id:42949 Ehrlichia platys 
2.28.1.8.5.9.2.7446 OTU 1 seq
prokMSA_id:6052 str. BD2-8
2.28.1.8.5.10 WOLBACHIA_SUBGROUP 58 seqs
2.28.1.8.5.10.6628 OTU 13 seqs
prokMSA_id:6080 Wolbachia sp
prokMSA_id:6088 Wolbachia pipientis
prokMSA_id:6090 symbiont of incompatibility symbiont of Nasonia vitripennis
prokMSA_id:6094 Wolbachia sp
prokMSA_id:6095 Wolbachia sp
prokMSA_id:6096 Wolbachia sp
prokMSA_id:6097 Wolbachia sp
prokMSA_id:6098 Wolbachia sp
prokMSA_id:6099 Wolbachia sp
prokMSA_id:6100 Wolbachia sp
prokMSA_id:6101 Wolbachia sp
prokMSA_id:6128 Wolbachia pipientis
prokMSA_id:6129 Wolbachia sp
2.28.1.8.5.10.6648 OTU 13 seqs
prokMSA_id:6093 Wolbachia sp
prokMSA_id:6104 symbiont of Trichogramma deion
prokMSA_id:6105 symbiont of Trichogramma deion
prokMSA_id:6107 unnamed organism
prokMSA_id:6108 Wolbachia sp
prokMSA_id:6112 endosymbiont of Bangasternus orientalis. M85266
prokMSA_id:6113 symbiont of incompatibility symbiont of Nasonia vitripennis
prokMSA_id:6118 symbiont of incompatibility symbiont of Nasonia longicornis
prokMSA_id:6120 symbiont of incompatibility symbiont of Nasonia giraulti
prokMSA_id:6124 Wolbachia sp
prokMSA_id:6125 unnamed organism
prokMSA_id:6142 symbiont of Trichogramma deion
prokMSA_id:83890 Wolbachia endosymbiont of Dirofilaria immitis strain DAX 
2.28.1.8.5.10.6803 OTU 8 seqs
prokMSA_id:6109 Wolbachia sp
prokMSA_id:18468 Wolbachia sp. Ablan16SWol 
prokMSA_id:28156 Wolbachia sp. Avit16SWol 
prokMSA_id:30977 Wolbachia sp. WCR16SWol 
prokMSA_id:34685 Wolbachia sp
prokMSA_id:41221 Wolbachia sp. Dlem16SWol 
prokMSA_id:52243 Wolbachia sp. Dcris16SWol 
prokMSA_id:52332 Wolbachia endosymbiont of Nephila clavata 
2.28.1.8.5.10.6830 OTU 1 seq
prokMSA_id:63330 clone RCP1-24 
2.28.1.8.5.10.6910 OTU 7 seqs
prokMSA_id:6131 symbiont of Dirofilaria immitis. Z49261
prokMSA_id:6132 unnamed organism
prokMSA_id:6134 Wolbachia sp
prokMSA_id:19317 Wolbachia endosymbiont of Onchocerca gutturosa 
prokMSA_id:23966 Wolbachia endosymbiont of Onchocerca gibsoni 
prokMSA_id:43030 Wolbachia sp. Okinawa-RS32 AF304445
prokMSA_id:73265 Wolbachia endosymbiont of Dirofilaria immitis 
2.28.1.8.5.10.6907 OTU 1 seq
prokMSA_id:6117 symbiont of Trichogramma deion
2.28.1.8.5.10.6908 OTU 5 seqs
prokMSA_id:6121 endosymbiont of Rhinocyllus conicus
prokMSA_id:40260 Wolbachia endosymbiont of Kalotermes flavicollis specific ho
prokMSA_id:50758 Wolbachia endosymbiont of Mansonella ozzardi 
prokMSA_id:51738 Wolbachia endosymbiont of Microcerotermes sp
prokMSA_id:87561 Wolbachia endosymbiont of Mansonella perstans isolate M02-05
2.28.1.8.5.10.7378 OTU 1 seq
prokMSA_id:23566 Wolbachia endosymbiont of Dirofilaria repens 
2.28.1.8.5.10.7481 OTU 9 seqs
prokMSA_id:6082 symbiont of Muscifidurax uniraptor
prokMSA_id:6106 symbiont of incompatibility symbiont of Nasonia vitripennis
prokMSA_id:6127 symbiont of incompatibility symbiont of Nasonia giraulti
prokMSA_id:6130 Wolbachia sp
prokMSA_id:6140 symbiont of incompatibility symbiont of Nasonia longicornis
prokMSA_id:28825 Wolbachia pipientis 
prokMSA_id:72880 Wolbachia endosymbiont of Mesaphorura macrochaeta 
prokMSA_id:77810 Wolbachia endosymbiont of Paratullbergia callipygos 
prokMSA_id:89135 Wolbachia endosymbiont 4 of Acromyrmex octospinosus AF491888
2.28.1.10 SPHINGOMONAS_GROUP 403 seqs
2.28.1.10.1 SPG.YANOIKUYAE_SUBGROUP 72 seqs
2.28.1.10.1.6897 OTU 1 seq
prokMSA_id:6162 Sphingomonas sp. str. DhA-33
2.28.1.10.1.7053 OTU 1 seq
prokMSA_id:6184 clone Sar248
2.28.1.10.1.7055 OTU 1 seq
prokMSA_id:33785 Alpha S-A1-4C 
2.28.1.10.1.7344 OTU 1 seq
prokMSA_id:43717 Rhizosphere soil isolate RSI-21 
2.28.1.10.1.7440 OTU 46 seqs
prokMSA_id:6154 Sphingomonas sp. str. SS86. D16148
prokMSA_id:6155 Sphingomonas paucimobilis str. UT26
prokMSA_id:6157 Sphingomonas flava str. RA2 DSM 8671
prokMSA_id:6163 Sphingomonas paucimobilis str. EPA 505
prokMSA_id:6165 Sphingomonas BRW2 str. BRW2
prokMSA_id:6167 str. CD. AF191022
prokMSA_id:6168 Sphingomonas chlorophenolica ATCC 33790
prokMSA_id:6176 Sphingomonas chlorophenolica str. SR3. X87162
prokMSA_id:6178 Sphingomonas paucimobilis
prokMSA_id:6179 Sphingomonas flava ATCC 29723
prokMSA_id:6181 Sphingomonas sp. str. CF06
prokMSA_id:6182 Sphingomonas herbicidovorans str. MBIC3166. AB022428
prokMSA_id:6183 Sphingomonas sp. str. VT1
prokMSA_id:24311 Sphingomonas sp. G296-3 
prokMSA_id:26964 Sphingomonas sp. LB126 AF335501
prokMSA_id:38158 Sphingomonas agrestis 
prokMSA_id:39728 Sphingomonas sp. DJ77 AF159257
prokMSA_id:41591 Sphingomonas sp. S-3 
prokMSA_id:51138 Sphingobium sp. K40 AJ009708
prokMSA_id:55376 Sphingomonas chungbukensis AY151392
prokMSA_id:67345 Sphingomonas sp. BPC4 AF494538
prokMSA_id:71130 Sphingomonas sp. isolate K74 
prokMSA_id:73215 Sphingomonas cloacae AY151393
prokMSA_id:74551 Sphingomonas sp. VM506 AF335468
prokMSA_id:88144 alpha clone:SUP27-27 AB112465
prokMSA_id:88252 HOClCi21 AY328570
prokMSA_id:88345 HOClCi52 AY328601
prokMSA_id:88506 Sphingomonas xenophaga strain: AJ6 AB099632
prokMSA_id:88512 Sphingomonas xenophaga strain: P1 AB099634
prokMSA_id:88570 HOClCi63 AY328612
prokMSA_id:89076 HOClCi12 AY328561
prokMSA_id:89304 HOClCi54 AY328603
prokMSA_id:89410 Sphingomonas xenophaga strain: AJ8 AB099633
prokMSA_id:89594 HOClCi34 AY328583
prokMSA_id:89642 HOClCi6 AY328555
prokMSA_id:89681 HOClCi28 AY328577
prokMSA_id:89964 HOClCi10 AY328559
prokMSA_id:90303 HOClCi14 AY328563
prokMSA_id:90395 Sphingomonas sp. AY277556
prokMSA_id:90560 HOClCi62 AY328611
prokMSA_id:90586 Drinking water MB10 AY328841
prokMSA_id:90665 HOClCi53 AY328602
prokMSA_id:90781 Sphingomonas sp. KH3-2 AF282616
prokMSA_id:93613 Sphingomonas paucimobilis isolate 12H6 AY367017
prokMSA_id:94024 Sphingomonas paucimobilis isolate Sg5 AY367015
prokMSA_id:94188 Sphingomonas paucimobilis isolate Sg6 AY367016
2.28.1.10.1.7514 OTU 1 seq
prokMSA_id:6158 Sphingomonas flava ATCC 39723
2.28.1.10.1.7528 OTU 21 seqs
prokMSA_id:6147 Sphingomonas yanoikuyae
prokMSA_id:6148 Sphingomonas yanoikuyae IFO 15102
prokMSA_id:6160 Sphingomonas yanoikuyae
prokMSA_id:6161 Sphingomonas yanoikuyae str. B1
prokMSA_id:6169 Sphingomonas MBIC3992 str. MBIC3992
prokMSA_id:6171 Sphingomonas yanoikuyae GIFU 9882
prokMSA_id:6172 Sphingomonas yanoikuyae str. B1
prokMSA_id:6173 Sphingomonas sp. str. Koll-16
prokMSA_id:6174 Sphingomonas sp. str. SS3 DSM 6432
prokMSA_id:6180 Sphingomonas yanoikuyae IFO 15163
prokMSA_id:6186 Sphingomonas sp. str. Q1
prokMSA_id:6194 Pseudomonas abikonensis IAM 12404
prokMSA_id:6198 Sphingomonas sp. str. UN1F2. U37346
prokMSA_id:42066 Sphingomonas sp. YT 
prokMSA_id:50339 Sphingobium yanoikuyae 
prokMSA_id:56342 Sphingomonas sp. KMG425 
prokMSA_id:59708 Sphingomonas sp. P2 
prokMSA_id:70433 Sphingomonas sp. JRL-4 
prokMSA_id:81332 Sphingomonas xenophaga 
prokMSA_id:84755 Sphingobium yanoikuyae 
prokMSA_id:90506 HOClCi33 AY328582
2.28.1.10.2 SPG.SP_STR_UN1F1_SUBGROUP 6 seqs
2.28.1.10.2.6800 OTU 1 seq
prokMSA_id:49721 clone AF1.5 
2.28.1.10.2.7118 OTU 1 seq
prokMSA_id:6197 clone LD10
2.28.1.10.2.7218 OTU 1 seq
prokMSA_id:50060 Sphingomonas sp. JS1 
2.28.1.10.2.7289 OTU 1 seq
prokMSA_id:32571 Sphingomonas sp. ML1 
2.28.1.10.2.7597 OTU 1 seq
prokMSA_id:6193 Sphingomonas DhA-95 str. DhA-95
2.28.1.10.2.7607 OTU 1 seq
prokMSA_id:40332 Rhizomonas sp. K6 strain K6
2.28.1.10.3 SPG.SP_STR_SYK6 1 seq
2.28.1.10.3.6901 OTU 1 seq
prokMSA_id:6203 Sphingomonas sp. str. SYK6
2.28.1.10.4 ZYM.MOBILIS_SUBGROUP 15 seqs
2.28.1.10.4.6748 OTU 1 seq
prokMSA_id:6208 Zymomonas mobilis subsp. pomaceae ATCC 29192
2.28.1.10.4.6902 OTU 1 seq
prokMSA_id:6204 Sphingomonas sp. str. A175
2.28.1.10.4.7132 OTU 1 seq
prokMSA_id:18013 Sphingomonas sp. K101 isolate K101
2.28.1.10.4.7402 OTU 1 seq
prokMSA_id:34245 Sphingomonas-like B12 
2.28.1.10.4.7435 OTU 8 seqs
prokMSA_id:6209 Zymomonas mobilis subsp. mobilis ATCC 10988
prokMSA_id:6210 Zymomonas mobilis str. ZM4
prokMSA_id:28323 Zymomonas mobilis strain ATCC29192 AF281032
prokMSA_id:38516 Zymomonas mobilis strain ATCC29191 AF281034
prokMSA_id:39861 Zymomonas mobilis 
prokMSA_id:43499 Zymomonas mobilis strain ATCC10988 
prokMSA_id:47404 Zymomonas mobilis cosmid clone 65G3 
prokMSA_id:50955 Zymomonas mobilis rrnB operon ; RpfN rpfN complete cds; rrnC
2.28.1.10.4.7545 OTU 1 seq
prokMSA_id:22164 Sphingomonas sp. SRS2 strain SRS2
2.28.1.10.4.7548 OTU 2 seqs
prokMSA_id:6205 Sphingomonas wittichii strain DSM 6014
prokMSA_id:6206 Afipia genosp. 13 str. G8991
2.28.1.10.5 SPG.PAUCIMOBILIS_SUBGROUP 48 seqs
2.28.1.10.5.6650 OTU 8 seqs
prokMSA_id:6238 Caulobacter CB296 str. CB296
prokMSA_id:55900 Sphingomonas sp. eh2 
prokMSA_id:56243 Sphingomonas faenia strain MA-olki
prokMSA_id:60250 Sphingomonas aurantiaca strain MA405 AJ429238
prokMSA_id:60251 Sphingomonas aurantiaca strain MA306a
prokMSA_id:65328 Sphingomonas sp. ATCC 31555 
prokMSA_id:71349 Sphingomonas aurantiaca strain MA101b AJ429236
prokMSA_id:78089 alpha clone:APe2_63 AB074640
2.28.1.10.5.6713 OTU 5 seqs
prokMSA_id:6223 Pseudomonas echinoides DSM 1805
prokMSA_id:6224 unnamed organism
prokMSA_id:6227 str. BD5-9
prokMSA_id:42568 GKS2-124 
prokMSA_id:44873 Sphingomonas sp. oral clone AV069 
2.28.1.10.5.6737 OTU 1 seq
prokMSA_id:77316 Sphingomonas sp. SAFR-010 
2.28.1.10.5.6750 OTU 1 seq
prokMSA_id:58870 Alpha '#33 orange' 
2.28.1.10.5.6790 OTU 4 seqs
prokMSA_id:6220 Sphingomonas DD38 str. DD38
prokMSA_id:6249 Sphingomonas sp. JSS-7 
prokMSA_id:43848 Sphingomonas sp. MK346 
prokMSA_id:63347 Sphingomonas melonis 
2.28.1.10.5.6821 OTU 9 seqs
prokMSA_id:6216 Sphingomonas sanguinis IFO 13937 . D13726
prokMSA_id:23168 Sphingomonas sp. MK355 
prokMSA_id:27012 Sphingomonas sanguis 
prokMSA_id:42710 Sphingomonas sp. MK331 
prokMSA_id:43164 Sphingomonas parapaucimobilis 
prokMSA_id:44864 Sphingomonas echinoides 
prokMSA_id:59540 CAGY7 strain CAGY7 
prokMSA_id:60396 Sphingomonadaceae LA19 
prokMSA_id:95162 alpha- clone S15D-MN50 AJ583168
2.28.1.10.5.6839 OTU 1 seq
prokMSA_id:19915 Sphingomonas sp. MK329 
2.28.1.10.5.7016 OTU 1 seq
prokMSA_id:77307 Sphingomonas sp. SAFR-027 
2.28.1.10.5.7374 OTU 2 seqs
prokMSA_id:70529 str. 86356 
prokMSA_id:73719 Sphingomonas sp. V1 
2.28.1.10.5.7411 OTU 1 seq
prokMSA_id:6222 Sphingomonas adhaesiva GIFU 11458
2.28.1.10.5.7535 OTU 8 seqs
prokMSA_id:6212 Sphingomonas parapaucimobilis IFO 15100
prokMSA_id:6215 Sphingomonas paucimobilis GIFU 2395
prokMSA_id:6217 Sphingomonas paucimobilis ATCC 29837
prokMSA_id:6229 Sphingomonas paucimobilis ATCC 29837
prokMSA_id:23465 alpha 33-FL9B99 AF469338
prokMSA_id:26323 Sphingomonas sp. MK341 
prokMSA_id:58866 UNSW2 
prokMSA_id:74840 Sphingomonas parapaucimobilis strain TzT-JG-2-6 AJ295690
2.28.1.10.5.7624 OTU 7 seqs
prokMSA_id:6221 Pseudomonas Ant20 str. Ant20
prokMSA_id:22537 Sphingomonas sp. M3C203B-B 
prokMSA_id:71383 Sphingomonas aerolata strain NW12
prokMSA_id:91185 Sphingomonas sp. pfB21 AY336550
prokMSA_id:93239 Sphingomonas sp. iEIV10 AY364031
prokMSA_id:93433 alpha clone KCM-C-8 AJ581618
prokMSA_id:94653 alpha- clone S15B-MN112 AJ583164
2.28.1.10.6 SPG.PRUNI_SUBGROUP 57 seqs
2.28.1.10.6.6653 OTU 5 seqs
prokMSA_id:65471 clone a13104 
prokMSA_id:74534 clone a13108 
prokMSA_id:75048 alpha clone JG34-KF-388
prokMSA_id:77510 Sphingomonas sp. SAFR-028 
prokMSA_id:93185 Sphingomonas sp. As2-1 AY367027
2.28.1.10.6.6666 OTU 1 seq
prokMSA_id:31927 clone LRE17
2.28.1.10.6.6696 OTU 1 seq
prokMSA_id:25242 Sphingomonas sp. strain:IFO 15914
2.28.1.10.6.6808 OTU 2 seqs
prokMSA_id:26183 WD290 clone WD290
prokMSA_id:30355 WD267 clone WD267 AJ292601
2.28.1.10.6.6846 OTU 1 seq
prokMSA_id:49731 Sphingomonas sp. SIA181-1A1 
2.28.1.10.6.6928 OTU 1 seq
prokMSA_id:65473 clone a13102 
2.28.1.10.6.7007 OTU 2 seqs
prokMSA_id:17649 Rhizosphere soil clone RSC-II-67 
prokMSA_id:74773 Agricultural soil clone SC-I-4 
2.28.1.10.6.7011 OTU 1 seq
prokMSA_id:31402 WD286 clone WD286
2.28.1.10.6.7022 OTU 1 seq
prokMSA_id:72535 soil clone 367-2 
2.28.1.10.6.7038 OTU 1 seq
prokMSA_id:78108 alpha clone:APe4_19
2.28.1.10.6.7035 OTU 11 seqs
prokMSA_id:6219 Blastobacter sp. str. BF14 ?
prokMSA_id:6243 Sphingomonas pruni str. Y-250 IFO 15498 . Y09637
prokMSA_id:6248 Sphingomonas asaccharolytica IFO 10564
prokMSA_id:6251 Sphingomonas sp. str. S213
prokMSA_id:31767 Sphingomonas sp. PC5.2 strain PC5.2
prokMSA_id:40282 Sphingomonas echinoides strain ATCC 14820T
prokMSA_id:48722 Sphingomonas sp. PC5.28 strain PC5.28
prokMSA_id:68657 clone KRA30-07 
prokMSA_id:71464 Sphingomonas sp. MN 18.3a isolate MN 18.3a AJ313029
prokMSA_id:74176 Sphingomonas sp. oral clone AW030 
prokMSA_id:86135 Sphingomonas sp. MN 18.3a strain MN 18.3a
2.28.1.10.6.7121 OTU 10 seqs
prokMSA_id:6241 Sphingomonas trueperi LMG 2142
prokMSA_id:19856 Sphingomonas sp. strain:IFO 15495
prokMSA_id:21753 Sphingomonas sp. strain:IFO 15496
prokMSA_id:40384 Sphingomonas pituitosa strain EDIV
prokMSA_id:47031 Sphingomonas sp. strain:IFO 15497
prokMSA_id:65321 Sphingomonas sp. ATCC 31853 
prokMSA_id:65322 Sphingomonas sp. ATCC 31961 
prokMSA_id:65323 Sphingomonas sp. ATCC 21423 
prokMSA_id:65327 Sphingomonas sp. ATCC 31554 
prokMSA_id:65329 Sphingomonas elodea 
2.28.1.10.6.7174 OTU 1 seq
prokMSA_id:44980 Sphingomonas sp. clone KL-2-4-7 
2.28.1.10.6.7215 OTU 1 seq
prokMSA_id:50190 alpha clone SM2B06 
2.28.1.10.6.7319 OTU 1 seq
prokMSA_id:58867 UNSW1 
2.28.1.10.6.7356 OTU 1 seq
prokMSA_id:50700 WD208 clone WD208
2.28.1.10.6.7369 OTU 5 seqs
prokMSA_id:6234 Asticcacaulis excentricus ACM 1263
prokMSA_id:6235 Asticcacaulis biprosthecium str. MBIC3411 ACM 2498
prokMSA_id:6236 Caulobacter leidyi ATCC 15260
prokMSA_id:6239 Caulobacter leidyi ATCC 15260
prokMSA_id:6240 Caulobacter leidyi ATCC 15260
2.28.1.10.6.7482 OTU 1 seq
prokMSA_id:76149 alpha clone JG37-AG-18
2.28.1.10.6.7509 OTU 2 seqs
prokMSA_id:34996 Alpha S-N1-8A 
prokMSA_id:50823 Alpha S-N1-21B 
2.28.1.10.6.7526 OTU 1 seq
prokMSA_id:73393 soil clone 565-2 
2.28.1.10.6.7532 OTU 1 seq
prokMSA_id:6245 Caulobacter WCP2020S str. WCP2020S
2.28.1.10.6.7550 OTU 1 seq
prokMSA_id:74174 soil clone 768-2 
2.28.1.10.6.7555 OTU 1 seq
prokMSA_id:20557 mRNA clone sipK48
2.28.1.10.6.7570 OTU 1 seq
prokMSA_id:34362 soil clone 739-2 
2.28.1.10.6.7625 OTU 3 seqs
prokMSA_id:6252 Sphingomonas pruni str. Y-250 IFO 15498
prokMSA_id:6253 Sphingomonas asaccharolytica str. Y-345 IFO 15499
prokMSA_id:6254 Sphingomonas mali str. Y-347 IFO 15500
2.28.1.10.7 RHZ.SUBERIFACIENS_SUBGROUP 13 seqs
2.28.1.10.7.6948 OTU 1 seq
prokMSA_id:6255 Rhizomonas suberifaciens IFO 15211
2.28.1.10.7.6951 OTU 1 seq
prokMSA_id:6258 clone Sar324
2.28.1.10.7.7309 OTU 1 seq
prokMSA_id:85152 alpha SBR9-15/alpha1 
2.28.1.10.7.7382 OTU 9 seqs
prokMSA_id:17664 delta ARCT1-20 AF440708
prokMSA_id:19587 delta Arctic95A-13 
prokMSA_id:20106 delta Arctic96BD-3 
prokMSA_id:24014 marine pB1-87 U86517
prokMSA_id:31338 delta Arctic95C-5 
prokMSA_id:42569 gamma NAC60-12 
prokMSA_id:46779 delta Arctic96AD-7 AF355040
prokMSA_id:47801 marine pN1-23 U86456
prokMSA_id:80055 delta clone WCPAP10 AY220714
2.28.1.10.7.7606 OTU 1 seq
prokMSA_id:55355 Sphingomonas sp. Y2 
2.28.1.10.9 BLA.NATATORIA_SUBGROUP 42 seqs
2.28.1.10.9.6663 OTU 32 seqs
prokMSA_id:6266 str. HTA473
prokMSA_id:6268 Blastomonas natatoria ATCC 35951
prokMSA_id:6290 Sphingomonas B28161 str. B28161
prokMSA_id:6301 Sphingomonas sp. str. F199. U20756
prokMSA_id:6314 Sphingomonas sp. str. SW54. U85838
prokMSA_id:6325 Sphingomonas macrogoltabidus str. 203 IFO 15033
prokMSA_id:23579 Alpha D-St0-8A AB074687
prokMSA_id:25733 Alpha D-St1-4 AB074691
prokMSA_id:29325 Alpha F0813 AF235997
prokMSA_id:30174 Alpha S-St1-6C AB074740
prokMSA_id:36544 Alpha S-St1-8B AB074742
prokMSA_id:38095 Alpha D-St1-8D AB074693
prokMSA_id:40275 Alpha D-A2-9 AB074718
prokMSA_id:45467 Alpha F0917 
prokMSA_id:48573 Alpha S-St1-8C AB074743
prokMSA_id:52854 Alpha S-St1-7D1 AB074741
prokMSA_id:66630 alpha clone 1-19 AY094496
prokMSA_id:68724 Glacial ice M3C1.8K-TD9 
prokMSA_id:69624 Alpha AP-22 
prokMSA_id:70814 Alpha AP-9-1 
prokMSA_id:77547 Sphingomonas sp. SAFR-042 AY167827
prokMSA_id:77860 alpha clone:APe9_8 AB074639
prokMSA_id:88816 Drinking water MB28 AY328850
prokMSA_id:89712 Drinking water Y20 AY328823
prokMSA_id:90016 Drinking water Y14 AY328817
prokMSA_id:90301 DSSD3 AY328703
prokMSA_id:90538 Sphingomonas sp. C42 strain C42 AJ575817
prokMSA_id:90554 Drinking water MB27 AY328849
prokMSA_id:90739 DSSD97 AY328794
prokMSA_id:92479 Sphingomonas sp. WSCII AY344805
prokMSA_id:92490 Sphingomonas sp. oral clone FI012 AY349411
prokMSA_id:98472 alpha clone NE73 AJ575710
2.28.1.10.9.6914 OTU 1 seq
prokMSA_id:61114 Alpha MGP-68 
2.28.1.10.9.7014 OTU 1 seq
prokMSA_id:6263 Erythromonas QSSC5-6 str. QSSC5-6
2.28.1.10.9.7052 OTU 1 seq
prokMSA_id:19427 clone HTB9 
2.28.1.10.9.7090 OTU 6 seqs
prokMSA_id:6262 Erythromonas ursincola str. KR-99 DSM 9006
prokMSA_id:6264 Blastomonas natatoria DSM 3183
prokMSA_id:6265 Erythromonas ursincola str. KR-99 DSM 9006
prokMSA_id:6269 Blastomonas natatoria DSM 3183
prokMSA_id:61834 alpha clone CLi292 
prokMSA_id:72160 Blastobacter sp. SMCC B0477 
2.28.1.10.9.7537 OTU 1 seq
prokMSA_id:84022 alpha clone FBP255 
2.28.1.10.11 SPG.SUBARCTICA_SUBGROUP 44 seqs
2.28.1.10.11.6633 OTU 1 seq
prokMSA_id:21583 clone 1958 
2.28.1.10.11.6706 OTU 1 seq
prokMSA_id:48962 Agricultural soil isolate SI-15 
2.28.1.10.11.6746 OTU 1 seq
prokMSA_id:24166 Sphingomonas sp. HL7 
2.28.1.10.11.6812 OTU 1 seq
prokMSA_id:39863 Sphingomonas sp. ACM-3962 
2.28.1.10.11.6958 OTU 1 seq
prokMSA_id:52205 alpha clone BIfcii31
2.28.1.10.11.6987 OTU 1 seq
prokMSA_id:64891 alpha pT-436 
2.28.1.10.11.7019 OTU 1 seq
prokMSA_id:39607 WD203 clone WD203
2.28.1.10.11.7048 OTU 1 seq
prokMSA_id:17742 WD249 clone WD249
2.28.1.10.11.7075 OTU 5 seqs
prokMSA_id:6292 clone T28
prokMSA_id:6298 str. 2a
prokMSA_id:22564 FukuS56 
prokMSA_id:36069 WD2119 clone WD2119
prokMSA_id:37092 Novosphingobium sp. K16 strain K16
2.28.1.10.11.7100 OTU 3 seqs
prokMSA_id:6278 Sphingomonas capsulata GIFU 11526
prokMSA_id:6280 Sphingomonas C28242 str. C28242
prokMSA_id:6297 str. from Lake Gossenkoellesee
2.28.1.10.11.7102 OTU 2 seqs
prokMSA_id:80924 Arctic sea ice ARK9996 
prokMSA_id:83904 Antarctic R-9221 strain R-9221
2.28.1.10.11.7108 OTU 1 seq
prokMSA_id:38923 alpha 4%N-26d-5 
2.28.1.10.11.7110 OTU 6 seqs
prokMSA_id:6293 Sphingomonas D16 str. D16
prokMSA_id:36281 Sphingomonas sp. KA1 
prokMSA_id:57342 Novosphingobium subarcticum 
prokMSA_id:71360 Sphingomonas sp. AV6C 
prokMSA_id:77528 Novosphingomonas subarcticum strain SAFR-035 
prokMSA_id:78207 alpha clone:APe9_4
2.28.1.10.11.7136 OTU 1 seq
prokMSA_id:18607 Novosphingomonas sp. ARI-1 
2.28.1.10.11.7165 OTU 1 seq
prokMSA_id:77937 Sphingomonas sp. IW3 
2.28.1.10.11.7183 OTU 1 seq
prokMSA_id:79611 Arctic sea ice ARK10016 
2.28.1.10.11.7235 OTU 1 seq
prokMSA_id:82573 clone ABLCf85 
2.28.1.10.11.7303 OTU 1 seq
prokMSA_id:37143 antarctic soil clone bh4.32 
2.28.1.10.11.7357 OTU 1 seq
prokMSA_id:73289 Unknown marine alpha JP63.1 
2.28.1.10.11.7394 OTU 6 seqs
prokMSA_id:6285 Sphingomonas aromaticivorans IFO 16084
prokMSA_id:6286 Sphingomonas subterranea IFO 16086
prokMSA_id:70401 Sphingomonas aromaticivorans SMCC B0522 
prokMSA_id:70921 Sphingomonas subterraneae SMCC B0478 
prokMSA_id:73612 Sphingomonas aromaticivorans SMCC B0695 
prokMSA_id:74445 Sphingomonas aromaticivorans SMCC F199 
2.28.1.10.11.7470 OTU 1 seq
prokMSA_id:78821 Novosphingobium sp. J30 
2.28.1.10.11.7576 OTU 5 seqs
prokMSA_id:6287 Sphingomonas sp. str. MBIC4193
prokMSA_id:6296 Sphingomonas stygia IFO 16085
prokMSA_id:28794 Alpha F06021 
prokMSA_id:44107 Sphingomonas stygialis SMCC B0712 
prokMSA_id:51683 FukuN22 
2.28.1.10.11.7582 OTU 1 seq
prokMSA_id:6295 Sphingomonas QSSC1-14 str. QSSC1-14
2.28.1.10.12 SPG.MACROGOLTABIDUS_SUBGROUP 39 seqs
2.28.1.10.12.6913 OTU 2 seqs
prokMSA_id:48821 alpha clone MERTZ_0CM_263 
prokMSA_id:61110 Alpha MGP-83 
2.28.1.10.12.7176 OTU 1 seq
prokMSA_id:26262 Alpha 7CY 
2.28.1.10.12.7185 OTU 7 seqs
prokMSA_id:32470 clone P3OU-37 AF414579
prokMSA_id:55502 Sphingomonas sp. LCSAOTU29 AF506050
prokMSA_id:60493 Alpha Z14 AF488649
prokMSA_id:60494 Alpha Z15 AF488650
prokMSA_id:63023 clone OSS-11 AY122601
prokMSA_id:79271 clone csbio160302 
prokMSA_id:83641 Marine arctic deep-sea FD10 AJ557858
2.28.1.10.12.7280 OTU 1 seq
prokMSA_id:6321 str. BD7-1
2.28.1.10.12.7278 OTU 1 seq
prokMSA_id:6320 Sphingomonas terrae str. E-1-A IFO 15098
2.28.1.10.12.7285 OTU 12 seqs
prokMSA_id:6326 Sphingomonas KT-1 str. KT-1
prokMSA_id:6327 Sphingomonas sp. str. RB2256
prokMSA_id:6329 Sphingomonas sp. str. MBIC3365
prokMSA_id:19973 Sphingomonas alaska strain RB2515 
prokMSA_id:40084 Sphingomonas alaskensis strain AF01 
prokMSA_id:42377 Sphingomonas alaskensis strain RB2256 
prokMSA_id:44192 Sphingomonas sp. strain:IFO 15917
prokMSA_id:52193 Sphingomonas macrogoltabidus 
prokMSA_id:60721 Monochloroacetic-acid-degrading MCAA3 
prokMSA_id:66835 Sphingomonas sp. S37 
prokMSA_id:72044 Sphingomonas alaska strain RB2510 
prokMSA_id:74035 Sphingomonas sp. JRL-5 
2.28.1.10.12.7287 OTU 1 seq
prokMSA_id:16401 clone t035 
2.28.1.10.12.7342 OTU 1 seq
prokMSA_id:50200 clone TAF-B92 
2.28.1.10.12.7347 OTU 2 seqs
prokMSA_id:21569 clone KS21 
prokMSA_id:37060 clone KS11 
2.28.1.10.12.7404 OTU 3 seqs
prokMSA_id:60514 Sphingomonas sp. B18 AF410927
prokMSA_id:69966 Alpha AP-6 
prokMSA_id:72895 Alpha AP-8 
2.28.1.10.12.7445 OTU 7 seqs
prokMSA_id:6313 Sphingomonas adhaesiva IFO 15099
prokMSA_id:6328 Sphingomonas JSS-54 str. JSS-54
prokMSA_id:31367 Sphingomonas sp. SA-3 
prokMSA_id:45857 Sphingopyxis witflariensis 
prokMSA_id:68620 clone KRA30+14 
prokMSA_id:78445 Phenanthrene-degrading M20 
prokMSA_id:81691 Sphingomonas sp. EVA17 
2.28.1.10.12.7461 OTU 1 seq
prokMSA_id:69828 Alpha AP-7 
2.28.1.10.13 ERB.LONGUS_SUBGROUP 65 seqs
2.28.1.10.13.6690 OTU 8 seqs
prokMSA_id:6343 Porphyrobacter KK348 str. KK348
prokMSA_id:6352 Porphyrobacter MBIC3936 str. MBIC3936
prokMSA_id:6361 Porphyrobacter KK351 str. KK351
prokMSA_id:6364 str. 4b
prokMSA_id:21655 alpha clone SM2B03 
prokMSA_id:37650 Porphyrobacter tepidarius strain OK5APO 
prokMSA_id:50853 Alpha F0812 
prokMSA_id:81820 clone:A-6
2.28.1.10.13.6700 OTU 8 seqs
prokMSA_id:6344 Porphyrobacter tepidarius str. OT3 DSM 10594
prokMSA_id:6345 Porphyrobacter MBIC3897 str. MBIC3897
prokMSA_id:6350 Porphyrobacter neustonensis DSM 9434
prokMSA_id:54234 alpha strain 15s.b
prokMSA_id:60586 clone B10 AF407713
prokMSA_id:77813 Alpha A-col-BFA-6 isolate A-col-BFA-6
prokMSA_id:79541 Porphyrobacter cryptus strain ALC-2 
prokMSA_id:89759 Drinking water OR2 AY328799
2.28.1.10.13.6749 OTU 1 seq
prokMSA_id:79915 Arctic sea ice ARK10031 
2.28.1.10.13.6835 OTU 1 seq
prokMSA_id:16463 Erythrobacter sp. AS-45 
2.28.1.10.13.7036 OTU 38 seqs
prokMSA_id:6335 Erythrobacter longus str. OCh 101 ATCC 33941
prokMSA_id:6336 str. MBIC2351
prokMSA_id:6337 Erythrobacter MBIC3019 str. MBIC3019
prokMSA_id:6338 Erythrobacter sp. str. Re1
prokMSA_id:6339 str. MBIC3953
prokMSA_id:6340 str. MBIC3952
prokMSA_id:6359 Erythrobacter longus str. OCh 101
prokMSA_id:6360 Erythrobacter litoralis str. T431-1187 DSM 8509
prokMSA_id:6362 str. MBIC1402
prokMSA_id:6363 Erythromicrobium RE35F/1 str. RE35F/1. AF118020
prokMSA_id:29655 Erythrobacter sp. MBIC4117 
prokMSA_id:30952 Erythrobacter sp. MB-16 
prokMSA_id:31853 alpha 4%N-26d-7 
prokMSA_id:33344 Erythrobacter sp. MBIC4118 
prokMSA_id:33905 Erythrobacter citreus AF314528
prokMSA_id:37398 Alpha NAP1 
prokMSA_id:38512 Erythrobacter sp. JP13.1 
prokMSA_id:40322 alpha 4%N-26d-27 
prokMSA_id:43392 Erythrobacter sp. SD-21 
prokMSA_id:49902 Erythrobacter citreus AF227259
prokMSA_id:53381 Lutibacterium anuloederans 
prokMSA_id:58400 Erythrobacter sp. MBIC3031 
prokMSA_id:58405 Alpha MBIC3030 
prokMSA_id:64083 Erythrobacter flavus strain SW-52 
prokMSA_id:64084 Erythrobacter flavus strain SW-46 
prokMSA_id:74914 Alpha HY-68 isolate HY-68
prokMSA_id:78562 Erythrobacter sp. 2216.25.25 
prokMSA_id:79367 Erythrobacter litoralis strain DSM 8509 
prokMSA_id:82642 Sphingomonadaceae T3 
prokMSA_id:84563 Marine arctic deep-sea HI9 
prokMSA_id:86199 Marine arctic deep-sea FF7a 
prokMSA_id:86299 Marine arctic deep-sea FC8b 
prokMSA_id:91093 clone ANT18/2_94 AY135668
prokMSA_id:91554 clone K2-S-15 AY344375
prokMSA_id:91605 K2-13 AY345436
prokMSA_id:95355 clone F53 AY375129
prokMSA_id:98444 clone F24 AY375117
prokMSA_id:98735 clone F18 AY375113
2.28.1.10.13.7155 OTU 1 seq
prokMSA_id:58404 Alpha MBIC3035 
2.28.1.10.13.7296 OTU 6 seqs
prokMSA_id:6351 IAM 12620
prokMSA_id:6353 str. HTA456
prokMSA_id:24395 Agrobacterium sanguineum strain:ATCC 25660
prokMSA_id:39689 Agrobacterium sanguineum strain:ATCC 25661
prokMSA_id:83716 Antarctic R-9216 strain R-9216
prokMSA_id:84218 Antarctic R-9478 strain R-9478
2.28.1.10.13.7572 OTU 1 seq
prokMSA_id:76145 alpha clone GuBH2-AG-57
2.28.1.10.13.7643 OTU 1 seq
prokMSA_id:36134 isolate HNSS12
2.28.1.10.14 SAN.SIBIRICUS 1 seq
2.28.1.10.14.6720 OTU 1 seq
prokMSA_id:6365 Sandaracinobacter sibiricus str. RB16-17
2.28.2 BETA_SUBDIVISION 1755 seqs
2.28.2.1 NEISSERIA_GROUP 52 seqs
2.28.2.1.2 MVR.AERODENITRIFICANS_SUBGROUP 8 seqs
2.28.2.1.2.7683 OTU 3 seqs
prokMSA_id:6367 Microvirgula aerodenitrificans str. SGLY2
prokMSA_id:66302 Aquaspirillum dispar 
prokMSA_id:74077 Microvirgula aerodenitrificans strain NZ753-98 
2.28.2.1.2.7945 OTU 1 seq
prokMSA_id:66305 Aquaspirillum serpens 
2.28.2.1.2.8004 OTU 2 seqs
prokMSA_id:16445 Laribacter hongkongensis 
prokMSA_id:40538 Laribacter hongkongensis strain NZ3166_99 AF449219
2.28.2.1.2.8035 OTU 1 seq
prokMSA_id:76586 clone HC-39 
2.28.2.1.2.8041 OTU 1 seq
prokMSA_id:64884 Aquaspirillum putridiconchylium 
2.28.2.1.3 VG.INDIGOFERA_SUBGROUP 1 seq
2.28.2.1.3.8066 OTU 1 seq
prokMSA_id:36932 str. 82348 
2.28.2.1.4 CRB.VIOLACEUM_SUBGROUP 33 seqs
2.28.2.1.4.7703 OTU 25 seqs
prokMSA_id:6373 Chromobacterium MBIC3901 str. MBIC3901
prokMSA_id:55614 Chromobacterium violaceum strain 52 complete 
prokMSA_id:56639 Chromobacterium sp. 27 complete AY117562
prokMSA_id:63483 Chromobacterium sp. 70 complete 
prokMSA_id:63486 Chromobacterium sp. 67 complete AY117568
prokMSA_id:63488 Chromobacterium sp. 62 complete 
prokMSA_id:63489 Chromobacterium sp. 53 complete 
prokMSA_id:63490 Chromobacterium sp. 44 complete 
prokMSA_id:63491 Chromobacterium sp. 32 complete AY117563
prokMSA_id:63492 Chromobacterium sp. 06 complete 
prokMSA_id:63493 Chromobacterium sp. 21 complete 
prokMSA_id:63494 Chromobacterium sp. 46 complete AY117559
prokMSA_id:63495 Chromobacterium sp. 29 complete 
prokMSA_id:63496 Chromobacterium violaceum strain 07 complete 
prokMSA_id:63497 Chromobacterium sp. 23 complete 
prokMSA_id:63500 Chromobacterium sp. 64 complete 
prokMSA_id:63503 Chromobacterium violaceum strain 49 complete 
prokMSA_id:63505 Chromobacterium sp. 48 complete 
prokMSA_id:92140 Chromobacterium violaceum ATCC 12472 section 4 of 16 of the 
prokMSA_id:92311 Chromobacterium violaceum ATCC 12472 section 13 of 16 of the
prokMSA_id:92420 Chromobacterium violaceum ATCC 12472 section 12 of 16 of the
prokMSA_id:92520 Chromobacterium violaceum ATCC 12472 section 15 of 16 of the
prokMSA_id:92865 Chromobacterium violaceum ATCC 12472 section 2 of 16 of the 
prokMSA_id:92928 Chromobacterium violaceum ATCC 12472 section 6 of 16 of the 
prokMSA_id:93662 Chromobacterium violaceum ATCC 12472 complete genome NC_0050
2.28.2.1.4.7729 OTU 3 seqs
prokMSA_id:63484 Chromobacterium sp. 68 complete 
prokMSA_id:63485 Chromobacterium sp. 71 complete 
prokMSA_id:63487 Chromobacterium sp. 66 complete 
2.28.2.1.4.7853 OTU 1 seq
prokMSA_id:6372 str. NKB6
2.28.2.1.4.7862 OTU 1 seq
prokMSA_id:6374 str. MBIC3903
2.28.2.1.4.7889 OTU 1 seq
prokMSA_id:77630 beta clone:Rs-D51
2.28.2.1.4.8129 OTU 2 seqs
prokMSA_id:20511 Beta S-A1-8B 
prokMSA_id:34835 Alpha S-N1-8C AB074732
2.28.2.1.5 VIT.STERCORARIA_SUBGROUP 2 seqs
2.28.2.1.5.7701 OTU 2 seqs
prokMSA_id:6375 Vitreoscilla stercoraria ATCC 15218
prokMSA_id:6376 Vitreoscilla stercoraria str. VT1
2.28.2.1.6 NIS.CANIS_SUBGROUP 5 seqs
2.28.2.1.6.7675 OTU 2 seqs
prokMSA_id:75279 Neisseria sp. CCUG 46911 
prokMSA_id:75888 Neisseria sp. CCUG 46910 
2.28.2.1.6.7867 OTU 1 seq
prokMSA_id:6378 Neisseria canis str. H6 ATCC 14687
2.28.2.1.6.8092 OTU 1 seq
prokMSA_id:58031 Neisseria dentiae V33 
2.28.2.1.6.8143 OTU 1 seq
prokMSA_id:42684 Neisseria sp. oral clone AK105 
2.28.2.1.8 KIN.KINGAE_SUBGROUP 3 seqs
2.28.2.1.8.7665 OTU 2 seqs
prokMSA_id:56599 Simonsiella steedae strain:IAM 14972
prokMSA_id:70506 Simonsiella steedae strain ATCC27409T AF328153
2.28.2.1.8.7885 OTU 1 seq
prokMSA_id:6380 Kingella kingae ATCC 23330
2.28.2.3 METHYLOPHILUS_GROUP 13 seqs
2.28.2.3.7664 OTU 1 seq
prokMSA_id:74566 beta clone GOBB3-CL330 
2.28.2.3.7673 OTU 1 seq
prokMSA_id:24165 beta clone BIqi38
2.28.2.3.7687 OTU 2 seqs
prokMSA_id:6485 clone OM43
prokMSA_id:48715 marine ZD0202 
2.28.2.3.7688 OTU 2 seqs
prokMSA_id:6483 clone HstpL60
prokMSA_id:6484 clone HstpL77
2.28.2.3.7842 OTU 1 seq
prokMSA_id:29664 marine ZD0412 
2.28.2.3.7892 OTU 1 seq
prokMSA_id:71394 Methylophilus freyburgensis strain I 42T
2.28.2.3.7923 OTU 1 seq
prokMSA_id:6487 str. POCPN-5
2.28.2.3.8029 OTU 1 seq
prokMSA_id:40655 beta KEppi37 
2.28.2.3.8050 OTU 1 seq
prokMSA_id:50624 beta clone BIki2
2.28.2.3.8084 OTU 1 seq
prokMSA_id:35310 beta clone GOBB3-CL138 
2.28.2.3.8150 OTU 1 seq
prokMSA_id:37301 Methylobacillus sp. 12S 
2.28.2.4 NITROSOMONAS_GROUP 145 seqs
2.28.2.4.1 GALLIONELLA_ASSEMBLAGE 2 seqs
2.28.2.4.1.7947 OTU 1 seq
prokMSA_id:6494 Gallionella ferruginea str. stock Johan
2.28.2.4.1.8103 OTU 1 seq
prokMSA_id:21368 clone GOUTA12 
2.28.2.4.3 NSS.MULTIFORMIS_SUBGROUP 118 seqs
2.28.2.4.3.7682 OTU 1 seq
prokMSA_id:40900 Nitrosovibrio sp. RY6A 
2.28.2.4.3.7679 OTU 1 seq
prokMSA_id:23416 Agricultural soil clone SC-I-66 
2.28.2.4.3.7694 OTU 1 seq
prokMSA_id:43839 Nitrosovibrio sp. RY3C 
2.28.2.4.3.7711 OTU 1 seq
prokMSA_id:19644 clone Ra9C4 
2.28.2.4.3.7715 OTU 1 seq
prokMSA_id:19603 beta SBR1021 
2.28.2.4.3.7744 OTU 2 seqs
prokMSA_id:6551 clone TRA3-20. AF047644
prokMSA_id:16969 Tui3-12 
2.28.2.4.3.7748 OTU 6 seqs
prokMSA_id:20848 clone HTA1 AF418941
prokMSA_id:75970 beta clone S37.42SM AF431292
prokMSA_id:76245 beta clone S51.30PG AF431317
prokMSA_id:84097 beta clone SL2-2-D4F AY214705
prokMSA_id:84231 beta clone SL2-1-A4 
prokMSA_id:86126 beta clone SL2-1-E4 
2.28.2.4.3.7765 OTU 2 seqs
prokMSA_id:21767 gold mine D42 
prokMSA_id:83988 clone D135 
2.28.2.4.3.7789 OTU 2 seqs
prokMSA_id:63758 ammonia-oxidizing clone LD1-B6 
prokMSA_id:63761 ammonia-oxidizing clone LD1-B37 
2.28.2.4.3.7795 OTU 1 seq
prokMSA_id:62854 Nso_WWW-1 
2.28.2.4.3.7800 OTU 1 seq
prokMSA_id:36578 Banisveld landfill BVC77 
2.28.2.4.3.7796 OTU 2 seqs
prokMSA_id:6535 Nitrosovibrio TYM9 str. TYM9
prokMSA_id:44054 Nitrosovibrio sp. E12 
2.28.2.4.3.7805 OTU 56 seqs
prokMSA_id:6503 Nitrosospira briensis str. C-128
prokMSA_id:6504 Nitrosospira sp. str. L115
prokMSA_id:6505 Nitrosospira sp. str. A4
prokMSA_id:6506 Nitrosospira sp. str. A16
prokMSA_id:6517 Nitrosospira briensis str. C-128
prokMSA_id:6518 Nitrosospira sp. str. F3
prokMSA_id:6537 Nitrosospira sp. str. GM4
prokMSA_id:6538 Nitrosospira multiformis str. C-71 ATCC 25196
prokMSA_id:6547 Nitrosospira sp. str. Ka3
prokMSA_id:6548 Nitrosospira sp. str. Ka4
prokMSA_id:6549 Nitrosospira sp. str. O4
prokMSA_id:6550 Nitrosospira sp. str. O13
prokMSA_id:6561 Nitrosospira sp. str. D11
prokMSA_id:6565 Nitrosospira sp. str. III2
prokMSA_id:6589 Nitrosospira tenuis str. Nv1
prokMSA_id:6591 Nitrosospira tenuis str. C-141
prokMSA_id:6595 Nitrosospira sp. NpAV strain NpAV
prokMSA_id:6599 Nitrosospira sp. str. B6
prokMSA_id:6600 Nitrosospira sp. str. AF
prokMSA_id:6602 Nitrosospira tenuis str. Nv12
prokMSA_id:6604 Nitrosospira sp. str. 40KI
prokMSA_id:6605 Nitrosospira sp. str. T7
prokMSA_id:6606 Nitrosospira sp. str. III7
prokMSA_id:17651 Nitrosospira sp. R3c5 
prokMSA_id:20624 Nitrosospira sp. TCH716 
prokMSA_id:22110 Nitrosospira sp. R5c20 
prokMSA_id:22689 Nitrosospira sp. GS833 
prokMSA_id:23474 Nitrosospira sp. 39-19 isolate 39-19
prokMSA_id:25430 Nitrosospira sp. Nl20 isolate Nl20
prokMSA_id:29595 Nitrosospira tenuis isolate Nv1
prokMSA_id:31088 Nitrosospira sp. Nsp2 isolate Nsp2
prokMSA_id:33825 clone P3OB-51 
prokMSA_id:34829 Nitrosospira sp. 24C isolate 24C
prokMSA_id:42974 Nitrosospira sp. Nsp17 isolate Nsp17
prokMSA_id:43237 Nitrosospira sp. NRS527 
prokMSA_id:47154 Nitrosospira briensis isolate Nsp10
prokMSA_id:52631 Nitrosospira sp. BF16c46 
prokMSA_id:69065 Nitrosospira sp. Ka3 
prokMSA_id:69071 Nitrosospira sp. Nsp12 AY123801
prokMSA_id:69130 Nitrosospira sp. Nsp62 
prokMSA_id:69164 Nitrosospira sp. III7 
prokMSA_id:69429 Nitrosospira sp. Nsp1 
prokMSA_id:69463 Nitrosovibrio tenuis 
prokMSA_id:69564 Nitrosospira sp. Nsp5 AY123793
prokMSA_id:69607 Nitrosospira sp. Nl5 
prokMSA_id:69995 Nitrosospira sp. Nv6 isolate Nv6
prokMSA_id:70700 Nitrosospira briensis 
prokMSA_id:71885 Nitrosospira sp. Nsp40 
prokMSA_id:72023 Nitrosospira sp. L115 AY123796
prokMSA_id:72194 Nitrosospira sp. Nsp58 
prokMSA_id:72266 Nitrosospira sp. Nsp17 
prokMSA_id:73045 Nitrosospira sp. Nv6 
prokMSA_id:73871 Nitrosospira sp. Nsp2 
prokMSA_id:73957 Nitrosospira sp. Nsp41 
prokMSA_id:73969 Nitrosospira sp. Nsp65 
prokMSA_id:74048 Nitrosospira sp. Nsp57 
2.28.2.4.3.7806 OTU 1 seq
prokMSA_id:28735 clone 33-PA45B98 
2.28.2.4.3.7808 OTU 1 seq
prokMSA_id:85647 clone CCU25 
2.28.2.4.3.7819 OTU 1 seq
prokMSA_id:36586 
2.28.2.4.3.7858 OTU 1 seq
prokMSA_id:6603 Nitrosospira sp. str. Np22-21
2.28.2.4.3.7865 OTU 6 seqs
prokMSA_id:6609 str. soil sample A from pH 4.2 soil plot
prokMSA_id:6611 clone DT-2.3
prokMSA_id:6612 clone DT-3.2
prokMSA_id:6613 clone DT-3.6
prokMSA_id:6614 clone DT-4.5
prokMSA_id:6615 clone DT-4.10
2.28.2.4.3.7896 OTU 4 seqs
prokMSA_id:16904 Lake Michigan sediment LMBGA6-26 AF320925
prokMSA_id:48832 Lake Michigan sediment LMBGA4 AF320917
prokMSA_id:72414 Lake Michigan sediment LMRTGA4 AF320924
prokMSA_id:78574 clone JG30-KF-AS41
2.28.2.4.3.7906 OTU 1 seq
prokMSA_id:6530 clone Ws23
2.28.2.4.3.7931 OTU 4 seqs
prokMSA_id:6596 Nitrosospira multiformis str. C-71 ATCC 25196
prokMSA_id:19086 Nitrosospira sp. PJA1 
prokMSA_id:70906 Nitrosospira multiformis 
prokMSA_id:75979 Nitrosospira multiformis 
2.28.2.4.3.7930 OTU 2 seqs
prokMSA_id:38503 Nitrosomonas sp. NM 41 
prokMSA_id:73796 Nitrosomonas sp. Nm58 
2.28.2.4.3.7976 OTU 1 seq
prokMSA_id:74278 Nitrosomonas sp. Nm80 
2.28.2.4.3.7972 OTU 1 seq
prokMSA_id:67252 clone F13.40 
2.28.2.4.3.7989 OTU 1 seq
prokMSA_id:74628 Nitrosomonas sp. Nm59 
2.28.2.4.3.7996 OTU 1 seq
prokMSA_id:43046 beta GC152 
2.28.2.4.3.8007 OTU 1 seq
prokMSA_id:65813 soil clone S0159 
2.28.2.4.3.8019 OTU 1 seq
prokMSA_id:17997 beta GaN50324 
2.28.2.4.3.8017 OTU 1 seq
prokMSA_id:28664 Methylophilus sp. clone GOBB3-CL121 
2.28.2.4.3.8039 OTU 2 seqs
prokMSA_id:23587 SY6-23 
prokMSA_id:44238 SY6-54 AF296203
2.28.2.4.3.8054 OTU 1 seq
prokMSA_id:29614 antarctic soil clone bh1.36 
2.28.2.4.3.8064 OTU 1 seq
prokMSA_id:30012 Methylophilus sp. clone GOBB3-CL275 
2.28.2.4.3.8116 OTU 1 seq
prokMSA_id:6542 str. soil sample A from pH 4.2 soil plot
2.28.2.4.3.8137 OTU 5 seqs
prokMSA_id:6524 clone ACK-C30
prokMSA_id:6587 str. LD28
prokMSA_id:32326 Banisveld landfill BVC68 AY013694
prokMSA_id:47151 beta clone PRD01a011B 
prokMSA_id:70311 beta clone PRD01b012B 
2.28.2.4.3.8149 OTU 1 seq
prokMSA_id:18485 beta clone Spb253
2.28.2.4.3.8153 OTU 1 seq
prokMSA_id:28345 beta clone 11 
2.28.2.4.3.8159 OTU 1 seq
prokMSA_id:34857 Methylophilus sp. clone GOBB3-CL297 
2.28.2.4.4 NMN.COMMUNIS_SUBGROUP 1 seq
2.28.2.4.4.7831 OTU 1 seq
prokMSA_id:78042 Nitrosomonas nitrosa isolate Nm90
2.28.2.4.6 NMN.EUROPAEA_SUBGROUP 20 seqs
2.28.2.4.6.7770 OTU 6 seqs
prokMSA_id:6643 Nitrosomonas sp. str. HPC101
prokMSA_id:6650 Nitrosomonas sp. str. Koll-21
prokMSA_id:46231 Nitrosomonas europaea 
prokMSA_id:53386 Nitrosomonas sp. ENI-11 
prokMSA_id:82338 Ammonia-oxidizing NS500-9 
prokMSA_id:82677 Nitrosomonas europaea ATCC 19718 complete genome; segment 1/
2.28.2.4.6.7777 OTU 2 seqs
prokMSA_id:22792 Nitrosomonas sp. DYS323 
prokMSA_id:50735 Nitrosomonas sp. DYS317 
2.28.2.4.6.7803 OTU 1 seq
prokMSA_id:71516 beta clone 7.18.6 
2.28.2.4.6.7891 OTU 1 seq
prokMSA_id:40156 Nitrosomonas sp. K1 
2.28.2.4.6.8145 OTU 10 seqs
prokMSA_id:6642 Nitrosomonas sp. str. GH22
prokMSA_id:6651 Nitrosomonas TK794 str. TK794
prokMSA_id:18945 beta clone BIvii9
prokMSA_id:21019 Nitrosomonas sp. TK794 
prokMSA_id:30994 Nitrosomonas sp. isolate F6
prokMSA_id:33364 Nitrosomonas eutropha isolate Nm57
prokMSA_id:33788 Nitrosomonas sp. IWT202 
prokMSA_id:44831 Nitrosomonas sp. CNS326 
prokMSA_id:47242 Nitrosomonas sp. G1 
prokMSA_id:69328 Nitrosomonas eutropha 
2.28.2.4.7 NMN.MARINA_SUBGROUP 4 seqs
2.28.2.4.7.7672 OTU 1 seq
prokMSA_id:6662 Nitrosomonas marina str. Nm22
2.28.2.4.7.7774 OTU 1 seq
prokMSA_id:42181 Estuarine TA 921-i-NH4 
2.28.2.4.7.7784 OTU 2 seqs
prokMSA_id:20247 Nitrosomonas cryotolerans isolate Nm55
prokMSA_id:49524 Nitrosomonas cryotolerans AF272423
2.28.2.5 AZOARCUS_GROUP 235 seqs
2.28.2.5.2 HGH.THERMOLUTEOLUS_SUBGROUP 30 seqs
2.28.2.5.2.7667 OTU 1 seq
prokMSA_id:29990 tbr1-14 
2.28.2.5.2.7690 OTU 1 seq
prokMSA_id:40122 Hydrogenophilus sp. clone 
2.28.2.5.2.7706 OTU 13 seqs
prokMSA_id:6685 str. HMD444
prokMSA_id:21915 mle1-14 
prokMSA_id:45235 mle1-3 
prokMSA_id:50274 tbr4-2 
prokMSA_id:70430 tbr1-3 
prokMSA_id:70657 tbr4-5 
prokMSA_id:70880 tbr1-4 
prokMSA_id:72026 mle1-43 
prokMSA_id:72616 tbr4-67 
prokMSA_id:72763 mle1-32 
prokMSA_id:73564 tbr4-24 
prokMSA_id:84214 Petrobacter succinimandens BON4 
prokMSA_id:86365 Petrobacter succinimandens BON2 
2.28.2.5.2.7783 OTU 2 seqs
prokMSA_id:6678 Hydrogenophilus thermoluteolus str. TH-1
prokMSA_id:6684 Hydrogenophilus thermoluteolus str. TH-4
2.28.2.5.2.7903 OTU 1 seq
prokMSA_id:69403 Beta F06002 
2.28.2.5.2.7953 OTU 3 seqs
prokMSA_id:6679 clone OPB30. AF026979
prokMSA_id:34315 beta clone SM1E12 
prokMSA_id:41556 beta clone SM2G09 
2.28.2.5.2.7967 OTU 4 seqs
prokMSA_id:6673 Azoarcus sp. str. S5b2
prokMSA_id:26304 A42 AF158720
prokMSA_id:32718 A49 AF158721
prokMSA_id:37979 PM8-1 AF158715
2.28.2.5.2.7975 OTU 1 seq
prokMSA_id:85885 beta clone ST01-SN1D 
2.28.2.5.2.8048 OTU 1 seq
prokMSA_id:26330 beta clone CD11B1 
2.28.2.5.2.8060 OTU 1 seq
prokMSA_id:73404 tbr4-27 
2.28.2.5.2.8090 OTU 1 seq
prokMSA_id:51448 Candidatus Procabacter sp. TUMSJ-341 
2.28.2.5.2.8151 OTU 1 seq
prokMSA_id:29097 tbr4-23 
2.28.2.5.3 DCL.AGITATUS_SUBGROUP 42 seqs
2.28.2.5.3.7666 OTU 1 seq
prokMSA_id:67259 clone F13.33 
2.28.2.5.3.7721 OTU 1 seq
prokMSA_id:34983 beta clone 4-21 
2.28.2.5.3.7734 OTU 1 seq
prokMSA_id:6699 clone SJA-10
2.28.2.5.3.7772 OTU 1 seq
prokMSA_id:29482 Cardococcus australiensis 
2.28.2.5.3.7817 OTU 1 seq
prokMSA_id:59932 beta clone ccs265 
2.28.2.5.3.7836 OTU 1 seq
prokMSA_id:30998 clone d122 
2.28.2.5.3.7966 OTU 1 seq
prokMSA_id:60817 beta clone Cart-N1 
2.28.2.5.3.7991 OTU 1 seq
prokMSA_id:60588 clone G94 
2.28.2.5.3.8052 OTU 31 seqs
prokMSA_id:6676 clone WCHA1-52
prokMSA_id:6696 Dechlorimonas agitatus str. CKB
prokMSA_id:6700 Dechlorimonas CL str. CL
prokMSA_id:6701 Dechlorimonas NM str. NM
prokMSA_id:6702 Dechlorimonas SIUL str. SIUL
prokMSA_id:6703 Dechlorimonas MissR str. MissR
prokMSA_id:25359 Dechloromonas sp. JM 
prokMSA_id:25770 Dechloromonas sp. JJ 
prokMSA_id:29770 Dechloromonas sp. RCB 
prokMSA_id:30433 Dechloromonas sp. CL24 
prokMSA_id:39167 beta clone Spb272
prokMSA_id:41487 Perchlorate-reducing MLC33 
prokMSA_id:50481 beta SBRH147 
prokMSA_id:59909 beta clone ccslm218 
prokMSA_id:59918 Rhodocyclaceae clone ccs296 
prokMSA_id:59921 Rhodocyclaceae clone ccs272 
prokMSA_id:59931 Rhodocyclaceae clone ccs2105 
prokMSA_id:59933 Rhodocyclaceae clone ccs203 
prokMSA_id:60760 Dechloromonas sp. PC1 
prokMSA_id:61806 Beta AC1 
prokMSA_id:61824 beta clone CLi61 
prokMSA_id:62036 clone P4-4 
prokMSA_id:62388 beta clone FTLpost11 
prokMSA_id:65405 beta clone R70 
prokMSA_id:69212 Dechloromonas sp. LT-1 
prokMSA_id:75126 Dechlorimonas sp. SIUL strain ED1
prokMSA_id:76034 RO_clone_110 
prokMSA_id:77750 clone J2_3
prokMSA_id:82517 Perchlorate-reducing PMC 
prokMSA_id:83019 Perchlorate-reducing RC1 
prokMSA_id:83320 Perchlorate-reducing EAB2 
2.28.2.5.3.8056 OTU 1 seq
prokMSA_id:43118 SA35 
2.28.2.5.3.8073 OTU 1 seq
prokMSA_id:17553 mle1-7 
2.28.2.5.3.8161 OTU 1 seq
prokMSA_id:59895 beta clone ccspost2132 
2.28.2.5.5 RCY.TENUIS_SUBGROUP 34 seqs
2.28.2.5.5.7668 OTU 1 seq
prokMSA_id:6713 Rhodocyclus tenuis str. 3760 DSM 110
2.28.2.5.5.7670 OTU 1 seq
prokMSA_id:6717 Propionibacter pelophilus str. asp 66
2.28.2.5.5.7684 OTU 1 seq
prokMSA_id:64665 Thiobacillus plumbophilus strain DSM 6690
2.28.2.5.5.7691 OTU 1 seq
prokMSA_id:6720 clone SJA-109
2.28.2.5.5.7692 OTU 1 seq
prokMSA_id:6721 Propionivibrio dicarboxylicus DSM 5885
2.28.2.5.5.7717 OTU 2 seqs
prokMSA_id:6712 Rhodocyclus tenuis str. SW18
prokMSA_id:6718 Rhodocyclus tenuis str. 2761 DSM 109
2.28.2.5.5.7723 OTU 1 seq
prokMSA_id:50035 clone t011 
2.28.2.5.5.7763 OTU 1 seq
prokMSA_id:61822 beta clone CLi64 
2.28.2.5.5.7779 OTU 1 seq
prokMSA_id:70708 clone GIF16 
2.28.2.5.5.7857 OTU 6 seqs
prokMSA_id:6716 Dechlorisoma Iso1 str. Iso1
prokMSA_id:6722 Dechlorisoma suilla str. PS
prokMSA_id:6723 Dechlorisoma SDGM str. SDGM
prokMSA_id:6724 Dechlorisoma Iso2 str. Iso2
prokMSA_id:59899 beta clone ccslm36 
prokMSA_id:60759 Dechlorosoma sp. PCC 
2.28.2.5.5.7875 OTU 2 seqs
prokMSA_id:36331 beta clone Ebpr16 
prokMSA_id:45179 SA34 
2.28.2.5.5.7893 OTU 1 seq
prokMSA_id:36918 Agricultural soil clone SC-I-71 
2.28.2.5.5.7910 OTU 7 seqs
prokMSA_id:6714 Azoarcus 6a3 str. 6a3. AF011347
prokMSA_id:6715 Azoarcus BS2-3 str. BS2-3. AF011351
prokMSA_id:6719 clone SJA-52
prokMSA_id:35442 Dechlorosoma sp. PDX 
prokMSA_id:35520 Dechlorosoma sp. KJ 
prokMSA_id:76627 beta clone S15A-MN2
prokMSA_id:77054 beta clone S15A-MN6
2.28.2.5.5.7909 OTU 1 seq
prokMSA_id:44355 Iron-oxidizing acidophile m-1 
2.28.2.5.5.7938 OTU 1 seq
prokMSA_id:54073 clone:BCf6-08
2.28.2.5.5.8001 OTU 2 seqs
prokMSA_id:65363 beta clone Orbal D41 
prokMSA_id:74718 beta clone Orbal D54 
2.28.2.5.5.8036 OTU 1 seq
prokMSA_id:74988 beta clone Sh765B-TzT-132
2.28.2.5.5.8080 OTU 1 seq
prokMSA_id:17475 Banisveld landfill BVC47 
2.28.2.5.5.8109 OTU 1 seq
prokMSA_id:25562 clone p-2552-9F5 
2.28.2.5.5.8122 OTU 1 seq
prokMSA_id:42580 Propionivibrio limicola strain GolChi1 T
2.28.2.5.6 DG.ZOOGLOEOIDES_SUBGROUP_II 25 seqs
2.28.2.5.6.7726 OTU 1 seq
prokMSA_id:6735 clone SJA-21
2.28.2.5.6.7728 OTU 1 seq
prokMSA_id:6736 clone Dr18
2.28.2.5.6.7753 OTU 4 seqs
prokMSA_id:6731 Duganella zoogloeoides IAM 12136
prokMSA_id:6732 Duganella zoogloeoides str. 235 N.C. Dondero ATCC 19324
prokMSA_id:6733 Duganella zoogloeoides ATCC 19544. X74913
prokMSA_id:50725 clone ASB026 AB010611
2.28.2.5.6.7809 OTU 8 seqs
prokMSA_id:18572 sludge H13 AF234737
prokMSA_id:19927 sludge H22 AF234697
prokMSA_id:22275 sludge A16 
prokMSA_id:25035 sludge S21 AF234738
prokMSA_id:34086 PHOS-HC20 
prokMSA_id:37845 sludge H40 
prokMSA_id:40129 sludge H10 AF234693
prokMSA_id:45043 sludge H27 AF234722
2.28.2.5.6.7828 OTU 1 seq
prokMSA_id:17331 beta clone Elb168
2.28.2.5.6.7951 OTU 2 seqs
prokMSA_id:59335 clone HP1A03 
prokMSA_id:73258 clone LPB19 
2.28.2.5.6.7956 OTU 1 seq
prokMSA_id:6743 Zoogloea sp. str. DhA-35
2.28.2.5.6.7974 OTU 1 seq
prokMSA_id:65702 soil clone C1235 
2.28.2.5.6.8026 OTU 1 seq
prokMSA_id:6738 Zoogloea DhA-35 str. DhA-35
2.28.2.5.6.8127 OTU 4 seqs
prokMSA_id:70359 Zoogloea resiniphila strain PIV-3C2y
prokMSA_id:70483 Zoogloea resiniphila strain PIV-3A2w
prokMSA_id:72759 Zoogloea resiniphila strain PIV-3C2w
prokMSA_id:73489 Zoogloea resiniphila strain PIV-3A2y
2.28.2.5.6.8131 OTU 1 seq
prokMSA_id:66107 beta clone:KU34
2.28.2.5.7 THA.AROMATICA_SUBGROUP 36 seqs
2.28.2.5.7.7733 OTU 1 seq
prokMSA_id:30710 beta clone 36-9 
2.28.2.5.7.7815 OTU 1 seq
prokMSA_id:42293 Thauera aromatica strain 4FB1 
2.28.2.5.7.7880 OTU 3 seqs
prokMSA_id:6750 Thauera terpenica str. 58Eu DSM 12139
prokMSA_id:6752 Thauera terpenica str. 21Mol
prokMSA_id:6753 str. pCyN2
2.28.2.5.7.7907 OTU 17 seqs
prokMSA_id:6748 Pseudomonas butanovora IAM 12574. AB021377
prokMSA_id:6751 clone SJA-186
prokMSA_id:6755 clone AX39
prokMSA_id:6756 Thauera selenatis str. Ax ATCC 55363
prokMSA_id:6757 Thauera aromatica str. K172 clone K1 DSM 6984
prokMSA_id:6758 Thauera mz1t str. mz1t
prokMSA_id:6759 Thauera aromatica str. 3CB-1
prokMSA_id:6760 Azoarcus mXyN1 str. mXyN1
prokMSA_id:6761 Thauera mechernichii str. TL1
prokMSA_id:6763 Thauera T1 str. T1
prokMSA_id:22130 Thauera aromatica strain LG356
prokMSA_id:23705 Thauera aromatica strain 3CB2 
prokMSA_id:36677 Thauera aromatica strain 3BB1 
prokMSA_id:38171 beta SBR1022 
prokMSA_id:44747 Thauera aromatica strain S100
prokMSA_id:58572 Thauera sp. PIV-1 strain PIV-1
prokMSA_id:70860 Thauera aromatica 
2.28.2.5.7.7915 OTU 1 seq
prokMSA_id:27286 Sterolibacterium denitrificans strain Chol-1S
2.28.2.5.7.7925 OTU 5 seqs
prokMSA_id:6762 Thauera selenatis str. Ax ATCC 55363
prokMSA_id:25264 Thauera sp. B4P strain B4P
prokMSA_id:36782 beta SBR1011 
prokMSA_id:40990 Thauera sp. S2 strain S2
prokMSA_id:63593 Thauera sp. DNT-1 
2.28.2.5.7.7958 OTU 1 seq
prokMSA_id:6747 Thauera linaloolentis str. 47Lol DSM 12138
2.28.2.5.7.7962 OTU 1 seq
prokMSA_id:6749 str. 72Chol
2.28.2.5.7.7973 OTU 1 seq
prokMSA_id:6754 Azoarcus sp. str. LU1
2.28.2.5.7.8099 OTU 1 seq
prokMSA_id:23232 oxSCC-3 
2.28.2.5.7.8114 OTU 1 seq
prokMSA_id:67829 beta clone 44a-U1-9 
2.28.2.5.7.8134 OTU 1 seq
prokMSA_id:40231 GR-WP33-36 clone GR-WP33-36
2.28.2.5.7.8142 OTU 1 seq
prokMSA_id:18623 Thauera aromatica strain 4FB2 
2.28.2.5.7.8156 OTU 1 seq
prokMSA_id:71611 Azoarcus sp
2.28.2.5.8 AZC.INDIGENS_SUBGROUP 68 seqs
2.28.2.5.8.7669 OTU 2 seqs
prokMSA_id:6801 Azoarcus sp. str. BH72. L15530
prokMSA_id:6802 Azoarcus BH72 str. BH72
2.28.2.5.8.7674 OTU 22 seqs
prokMSA_id:6766 Azoarcus denitrificians str. Td-15
prokMSA_id:6767 Azoarcus anaerobius str. LuFRes1 DSM 12081
prokMSA_id:6768 str. pCyN1. Y17284
prokMSA_id:6769 Azoarcus CR23 str. CR23
prokMSA_id:6770 Azoarcus PH002 str. PH002
prokMSA_id:6771 Azoarcus 22Lin str. 22Lin
prokMSA_id:6773 Azoarcus EbN1 str. EbN1
prokMSA_id:6774 Azoarcus PbN1 str. PbN1
prokMSA_id:6776 Azoarcus sp. str. M3
prokMSA_id:6777 Azoarcus sp. str. M3
prokMSA_id:6778 Azoarcus tolulyticus str. BL11
prokMSA_id:6781 Azoarcus denitrificians str. Td-17
prokMSA_id:6782 Azoarcus denitrificians str. Td-3
prokMSA_id:6784 Azoarcus denitrificians str. Td-21
prokMSA_id:6796 Azoarcus FL05 str. FL05
prokMSA_id:6805 Azoarcus tolulyticus str. XQ3
prokMSA_id:6809 Azoarcus denitrificians str. Td-2
prokMSA_id:39189 Azoarcus buckelii strain U120
prokMSA_id:49535 Eub No. 21 
prokMSA_id:59917 beta clone ccs250 
prokMSA_id:59923 beta clone ccs2133 
prokMSA_id:66610 Azoarcus sp. HxN1 
2.28.2.5.8.7709 OTU 1 seq
prokMSA_id:29264 Candidatus Procabacter sp. TUMSJ-226 
2.28.2.5.8.7724 OTU 1 seq
prokMSA_id:6783 Azoarcus communis str. SWub3 DSM 12120
2.28.2.5.8.7751 OTU 1 seq
prokMSA_id:6807 Azoarcus denitrificians str. Td-19
2.28.2.5.8.7750 OTU 1 seq
prokMSA_id:75583 beta clone JG37-AG-35
2.28.2.5.8.7760 OTU 1 seq
prokMSA_id:6794 clone OPB37
2.28.2.5.8.7758 OTU 2 seqs
prokMSA_id:6792 Azoarcus indigens str. VB32 LMG 9092
prokMSA_id:6806 Azoarcus indigens str. VB32 . L15531
2.28.2.5.8.7759 OTU 1 seq
prokMSA_id:6793 str. OS isolate ac-16
2.28.2.5.8.7787 OTU 1 seq
prokMSA_id:46568 beta clone:pHAuB-J
2.28.2.5.8.7794 OTU 1 seq
prokMSA_id:45625 beta SBR1009 
2.28.2.5.8.7824 OTU 1 seq
prokMSA_id:77638 beta clone:Rs-B77
2.28.2.5.8.7852 OTU 1 seq
prokMSA_id:31143 clone 1405-9 
2.28.2.5.8.7948 OTU 14 seqs
prokMSA_id:6775 Azoarcus tolulyticus str. Tol-4
prokMSA_id:6779 Azoarcus toluclasticus str. MF7
prokMSA_id:6780 Azoarcus toluclasticus str. MF63
prokMSA_id:6785 Azoarcus evansii str. KB740 DSM 6898
prokMSA_id:6791 Azoarcus ToN1 str. ToN1
prokMSA_id:6795 Azoarcus sp. str. pF6
prokMSA_id:6797 Azoarcus T str. T
prokMSA_id:6804 Azoarcus denitrificians str. Td-1
prokMSA_id:30791 Azoarcus tolulyticus strain 4FB10 
prokMSA_id:35148 Azoarcus tolulyticus strain 2FB6 
prokMSA_id:44225 Azoarcus sp. CC-11 
prokMSA_id:51917 Azoarcus tolulyticus strain 2FB2 
prokMSA_id:64547 Azoarcus sp. CIB 
prokMSA_id:66959 Azoarcus sp. HA 
2.28.2.5.8.7980 OTU 3 seqs
prokMSA_id:31185 beta GC24 
prokMSA_id:32687 beta SBR1001 
prokMSA_id:48813 beta SBR2080 
2.28.2.5.8.8000 OTU 1 seq
prokMSA_id:6772 Thiobacillus aquaesulis
2.28.2.5.8.8053 OTU 1 seq
prokMSA_id:59905 gamma clone ccslm229 
2.28.2.5.8.8111 OTU 2 seqs
prokMSA_id:44377 Lake Michigan sediment LMBA38 AF320975
prokMSA_id:52341 Lake Michigan sediment LMBA38 and genes 
2.28.2.5.8.8130 OTU 7 seqs
prokMSA_id:6786 clone S3
prokMSA_id:6787 clone H25
prokMSA_id:6789 clone A2-33
prokMSA_id:6799 clone S23
prokMSA_id:6800 clone H30
prokMSA_id:47981 sludge H35 
prokMSA_id:49117 sludge S10 
2.28.2.5.8.8136 OTU 4 seqs
prokMSA_id:37585 Candidatus Procabacter acanthamoebae 
prokMSA_id:43515 Candidatus Procabacter sp. P23 AF177425
prokMSA_id:45071 Candidatus Procabacter sp. UWE2 
prokMSA_id:52040 Candidatus Procabacter sp. UWC6 
2.28.2.8 BORDETELLA_GROUP 97 seqs
2.28.2.8.1 LAU.MIRABILIS_SUBGROUP 2 seqs
2.28.2.8.1.7720 OTU 1 seq
prokMSA_id:81664 clone KD1-79 
2.28.2.8.1.8096 OTU 1 seq
prokMSA_id:83049 clone CCU16 
2.28.2.8.2 SUT.WADSWORTHENSIS_SUBGROUP 2 seqs
2.28.2.8.2.7970 OTU 2 seqs
prokMSA_id:6821 Sutterella wadsworthensis str. WAL 9054
prokMSA_id:6822 Sutterella wadsworthensis str. WAL 7877
2.28.2.8.3 PLS.EUROPAEA_SUBGROUP 20 seqs
2.28.2.8.3.7700 OTU 7 seqs
prokMSA_id:18037 Oligella urethralis 
prokMSA_id:31943 Oligella urethralis AJ247262
prokMSA_id:70363 Oligella urethralis strain LMG 1015 AJ251911
prokMSA_id:71251 Oligella urethralis AF227163
prokMSA_id:72841 Oligella urethralis AJ247263
prokMSA_id:82610 Oligella urethralis 
prokMSA_id:84552 Oligella urethralis strain COH-1 AY178994
2.28.2.8.3.7731 OTU 1 seq
prokMSA_id:6833 Alcaligenes sp. str. 05-36
2.28.2.8.3.7732 OTU 1 seq
prokMSA_id:6838 Alcaligenes sp. str. 15-58
2.28.2.8.3.7840 OTU 3 seqs
prokMSA_id:6824 Taylorella asinigenitalis UCD 1
prokMSA_id:30921 Taylorella asinigenitalis strain UK-1 
prokMSA_id:48585 Taylorella asinigenitalis strain UK-2 
2.28.2.8.3.7868 OTU 2 seqs
prokMSA_id:6825 Pelistega europaea str. N57 LMG 10982
prokMSA_id:6840 Pelistega europaea LMG 15725
2.28.2.8.3.7881 OTU 6 seqs
prokMSA_id:6823 Taylorella equigenitalis NCTC 11184
prokMSA_id:18745 Taylorella equigenitalis strain 10783 AF297172
prokMSA_id:27919 Taylorella equigenitalis 
prokMSA_id:29584 Taylorella equigenitalis strain 96-178 AF297173
prokMSA_id:33535 Taylorella equigenitalis 
prokMSA_id:47850 Taylorella equigenitalis strain NCTC11184 complete 
2.28.2.8.4 BRD.BRONCHISEPTICA_SUBGROUP 73 seqs
2.28.2.8.4.7716 OTU 1 seq
prokMSA_id:81802 clone KD9-65 
2.28.2.8.4.7737 OTU 1 seq
prokMSA_id:68624 clone KRA30+06A 
2.28.2.8.4.7764 OTU 1 seq
prokMSA_id:62502 Alcaligenaceae clone LA1-B29N 
2.28.2.8.4.7768 OTU 1 seq
prokMSA_id:38105 clone p-861-a5 
2.28.2.8.4.7780 OTU 1 seq
prokMSA_id:6858 clone DA014
2.28.2.8.4.7781 OTU 1 seq
prokMSA_id:6859 Alcaligenes sp. isolate CCUG 36768
2.28.2.8.4.7788 OTU 1 seq
prokMSA_id:73994 clone KRA30-58 
2.28.2.8.4.7802 OTU 1 seq
prokMSA_id:6860 endosymbiont of Blastocrithidia culicis
2.28.2.8.4.7833 OTU 3 seqs
prokMSA_id:24220 Pigmentiphaga kullae strain K24 
prokMSA_id:62876 Pigmentiphaga sp. NDS-1 
prokMSA_id:72020 Blackwater bioreactor BW5 
2.28.2.8.4.7838 OTU 10 seqs
prokMSA_id:6845 Alcaligenes defragrans str. 54Pin DSM 12141
prokMSA_id:6846 Alcaligenes NKNTAU str. NKNTAU
prokMSA_id:6850 str. rA9
prokMSA_id:6851 Alcaligenes defragrans str. 51Men
prokMSA_id:6852 Alcaligenes defragrans str. 62Car
prokMSA_id:6853 Alcaligenes defragrans str. 65Phen
prokMSA_id:66241 Alcaligenes defragrans isolate TJ4 
prokMSA_id:66242 Alcaligenes defragrans isolate N1 
prokMSA_id:66243 Alcaligenes defragrans isolate TG26 
prokMSA_id:72856 Elbe River snow isolate Iso14 
2.28.2.8.4.7874 OTU 1 seq
prokMSA_id:26472 clone Car117fc 
2.28.2.8.4.7902 OTU 18 seqs
prokMSA_id:6864 Alcaligenes faecalis subsp. dimethylsulfidosus str. M3A
prokMSA_id:18554 clone RB7C3 
prokMSA_id:19516 soil clone 1392-1 
prokMSA_id:25009 Alcaligenes faecalis 
prokMSA_id:28612 clone RA7C9 
prokMSA_id:29960 clone Ra9C2 
prokMSA_id:31266 clone RA7C16 
prokMSA_id:51247 clone RB13C11 
prokMSA_id:74694 Alcaligenes faecalis subsp. parafaecalis strain G
prokMSA_id:81261 clone ZZ9C4 
prokMSA_id:81518 clone ZZ14AC6 
prokMSA_id:82057 clone ZZ14C6 
prokMSA_id:88201 Alcaligenes sp. 2-1 AY296716
prokMSA_id:88431 Alcaligenes sp. 2-6 AY296717
prokMSA_id:92941 Alcaligenes sp. IS-17 complete AY346138
prokMSA_id:92976 Alcaligenes sp. IS-46 complete AY346136
prokMSA_id:93023 Alcaligenes sp. IS-33 complete AY346139
prokMSA_id:93083 Alcaligenes sp. IS-67 complete AY346140
2.28.2.8.4.7926 OTU 1 seq
prokMSA_id:50693 clone HTCC2 
2.28.2.8.4.7932 OTU 7 seqs
prokMSA_id:6869 Alcaligenes sp. str. 151
prokMSA_id:47955 clone GIF8 AF407199
prokMSA_id:64740 Achromobacter xylosoxidans subsp. denitrificans strain DSM 3
prokMSA_id:67343 Benzoapyrene-degrading BPC7 
prokMSA_id:73293 Alcaligenes sp. isolate ON5
prokMSA_id:78362 Achromobacter sp. LMG 6003 
prokMSA_id:90397 Alcaligenes sp. PCNB-2 AY283260
2.28.2.8.4.7984 OTU 1 seq
prokMSA_id:26755 beta clone BIfciii38
2.28.2.8.4.7992 OTU 16 seqs
prokMSA_id:6878 Alcaligenes sp. str. 159
prokMSA_id:6893 Bordetella sp. str. KP22
prokMSA_id:20845 Achromobacter xylosoxidans subsp. xylosoxidans 
prokMSA_id:21204 Achromobacter xylosoxidans subsp. xylosoxidans strain A19 
prokMSA_id:26123 Arsenite-oxidizing 'Alcaligenes fecalis HLE' 
prokMSA_id:32178 Arsenite-oxidizing BEN-4 
prokMSA_id:33221 clone GL182.6 
prokMSA_id:40974 Blackwater bioreactor BW6 
prokMSA_id:42554 Achromobacter xylosoxidans strain AU1011 
prokMSA_id:55338 Achromobacter xylosoxidans 
prokMSA_id:77844 Alcaligenes xylosoxidans strain E
prokMSA_id:78111 Alcaligenes xylosoxidans strain H
prokMSA_id:78128 Alcaligenes xylosoxidans strain A2
prokMSA_id:78208 Achromobacter sp. LMG 5911 
prokMSA_id:83269 Alcaligenes faecalis isolate 6818m-E
prokMSA_id:84201 Alcaligenes faecalis isolate 5659-H
2.28.2.8.4.7998 OTU 2 seqs
prokMSA_id:6876 symbiont of Crithidia sp
prokMSA_id:71865 Kinetoplastibacterium crithidii complete L29303
2.28.2.8.4.8016 OTU 1 seq
prokMSA_id:27017 Crater Lake CL0-83 
2.28.2.8.4.8024 OTU 1 seq
prokMSA_id:6880 clone WsCH66
2.28.2.8.4.8023 OTU 1 seq
prokMSA_id:49039 Green Bay ferromanganous micronodule MND1 
2.28.2.8.4.8062 OTU 1 seq
prokMSA_id:22985 Brackiella oedipodis strain LMG 19451 R8846
2.28.2.8.4.8063 OTU 1 seq
prokMSA_id:6892 Alcaligenes D2 str. D2
2.28.2.8.4.8094 OTU 1 seq
prokMSA_id:56470 Alcaligenes sp. VKM B-2263 
2.28.2.9 ACIDOVORAX_GROUP 613 seqs
2.28.2.9.2 TMN.THERMOSULFATUS_SUBGROUP 3 seqs
2.28.2.9.2.7773 OTU 3 seqs
prokMSA_id:20114 Thiomonas sp. Ynys1 AF387302
prokMSA_id:82126 Thiomonas sp. B2 isolate B2
prokMSA_id:82391 Thiomonas sp. B3 isolate B3 AJ549220
2.28.2.9.4 ACIDOVORAX_SUBGROUP 441 seqs
2.28.2.9.4.1 COM.TERRIGENA_SUBGROUP 63 seqs
2.28.2.9.4.1.7660 OTU 10 seqs
prokMSA_id:18248 Comamonas denitrificans strain 110 
prokMSA_id:20196 beta clone:OS1L-11 AB076868
prokMSA_id:22960 beta clone:OS1L-10
prokMSA_id:23191 Comamonas denitrificans strain 123 
prokMSA_id:35749 beta clone:OS1L-16 AB076869
prokMSA_id:40166 Comamonas denitrificans strain 2.99g 
prokMSA_id:42211 beta clone:OS1L-7
prokMSA_id:58512 clone:pHAuB-Q5 AB072708
prokMSA_id:73055 Comamonas denitrificans strain P17 
prokMSA_id:74723 Comamonas denitrificans strain 5.38g 
2.28.2.9.4.1.7695 OTU 8 seqs
prokMSA_id:6914 str. rM2
prokMSA_id:6915 str. rM3
prokMSA_id:6917 str. rM7
prokMSA_id:6918 str. rM11
prokMSA_id:6919 str. rM13
prokMSA_id:6920 str. rA1
prokMSA_id:6921 str. rA3
prokMSA_id:26116 clone ICBTF8 AF390915
2.28.2.9.4.1.7712 OTU 4 seqs
prokMSA_id:6924 Comamonas D22 str. D22
prokMSA_id:36914 Comamonas sp. clone KL-11-1-9 AF408327
prokMSA_id:73664 Comamonas terrigena strain LMG 2370T AJ430344
prokMSA_id:89264 Comamonas terrigena isolate TK17 AJ550274
2.28.2.9.4.1.7713 OTU 1 seq
prokMSA_id:6925 Comamonas 12022 str. 12022
2.28.2.9.4.1.7718 OTU 3 seqs
prokMSA_id:64300 Lampropedia hyalina 
prokMSA_id:84310 Lampropedia hyalina 
prokMSA_id:96749 Lampropedia hyalina complete strain:IAM 14890 AB089485
2.28.2.9.4.1.7754 OTU 1 seq
prokMSA_id:21007 beta clone BIfdi44
2.28.2.9.4.1.7756 OTU 1 seq
prokMSA_id:6938 Brachymonas denitrificans str. AS-P1 JCM 9216
2.28.2.9.4.1.7769 OTU 2 seqs
prokMSA_id:6932 str. rA6
prokMSA_id:6933 str. rA7
2.28.2.9.4.1.7791 OTU 1 seq
prokMSA_id:34261 clone BIxi1
2.28.2.9.4.1.7834 OTU 5 seqs
prokMSA_id:6928 Comamonas terrigena str. IMI 359870
prokMSA_id:6936 Comamonas terrigena IAM 12052
prokMSA_id:17652 Comamonas terrigena strain DSM 7099
prokMSA_id:66690 Comamonas terrigena strain LMG 1249
prokMSA_id:66691 Comamonas terrigena strain LMG 1253T
2.28.2.9.4.1.7869 OTU 1 seq
prokMSA_id:39805 TM7 phylum sp. oral clone EW055 
2.28.2.9.4.1.7894 OTU 1 seq
prokMSA_id:18497 Comamonas sp. PJ913 
2.28.2.9.4.1.7971 OTU 1 seq
prokMSA_id:59346 clone HP1B33 
2.28.2.9.4.1.7999 OTU 2 seqs
prokMSA_id:6916 str. rM6
prokMSA_id:37659 BHA17 AF090553
2.28.2.9.4.1.8033 OTU 10 seqs
prokMSA_id:6912 Comamonas testosteroni str. RH 1104 ATCC 11996
prokMSA_id:6926 Comamonas testosteroni str. MBIC3840
prokMSA_id:6927 Comamonas testosteroni str. MBIC3841
prokMSA_id:23431 Comamonas testosteroni 
prokMSA_id:29690 Comamonas sp. clone KL-27-1-15 
prokMSA_id:36587 and method detecting Ps. Alcaligenes KB2 strain by using in 
prokMSA_id:64241 Comamonas testosteroni isolate Q10 
prokMSA_id:69635 Comamonas sp. AV1A 
prokMSA_id:71738 Comamonas testosteroni WDL7 
prokMSA_id:84537 Comamonas testosteroni strain NCIMB 10643 
2.28.2.9.4.1.8040 OTU 1 seq
prokMSA_id:72347 sp. oral clone BE109 
2.28.2.9.4.1.8106 OTU 1 seq
prokMSA_id:85602 Acidovorax sp. 98-63833 
2.28.2.9.4.1.8112 OTU 5 seqs
prokMSA_id:17736 Comamonas sp. PJ111 
prokMSA_id:32915 Comamonas testosteroni strain SMCC B329 
prokMSA_id:62423 beta clone FTL2 
prokMSA_id:66754 Comamonas sp. SMCC B0630 
prokMSA_id:71872 Comamonas testosteroni strain SMCC B0589 
2.28.2.9.4.1.8119 OTU 1 seq
prokMSA_id:33606 a2b013 
2.28.2.9.4.1.8125 OTU 2 seqs
prokMSA_id:23049 NoosaAW70 
prokMSA_id:26921 NoosaAW33 
2.28.2.9.4.1.8155 OTU 1 seq
prokMSA_id:59570 TM7 phylum sp. oral clone EW086 
2.28.2.9.4.1.8162 OTU 1 seq
prokMSA_id:30714 Comamonas sp. PJ712 
2.28.2.9.4.2 HGP.FLAVA_SUBGROUP 2 seqs
2.28.2.9.4.2.7749 OTU 1 seq
prokMSA_id:76529 Hydrogenophaga sp. ATCC BAA-306 
2.28.2.9.4.2.7905 OTU 1 seq
prokMSA_id:25910 clone GOBB3-CL120 
2.28.2.9.4.3 HGP.PALLERONII_SUBGROUP 22 seqs
2.28.2.9.4.3.7757 OTU 2 seqs
prokMSA_id:51698 beta OM180 U70707
prokMSA_id:82776 Antarctic R-8890 strain R-8890
2.28.2.9.4.3.7814 OTU 1 seq
prokMSA_id:6953 Hydrogenophaga DSM 5680 str. S1
2.28.2.9.4.3.7854 OTU 3 seqs
prokMSA_id:6950 str. rJ9
prokMSA_id:6951 str. rM14
prokMSA_id:7024 str. rA2
2.28.2.9.4.3.7937 OTU 2 seqs
prokMSA_id:6952 Pseudomonas spinosa ATCC 14606
prokMSA_id:77847 Pseudomonas spinosa 
2.28.2.9.4.3.7942 OTU 1 seq
prokMSA_id:41692 beta clone SM1E01 
2.28.2.9.4.3.7988 OTU 1 seq
prokMSA_id:56021 Gram negative B3P-1 
2.28.2.9.4.3.8105 OTU 12 seqs
prokMSA_id:6946 Hydrogenophaga taeniospiralis ATCC 49743
prokMSA_id:18413 beta clone SM1E11 
prokMSA_id:36603 beta clone Spb54
prokMSA_id:37507 beta clone:TSL-2-9 AB076882
prokMSA_id:45634 beta clone Spb266
prokMSA_id:51945 beta clone Spb223
prokMSA_id:55821 clone KRA30+06T AY081978
prokMSA_id:81562 clone KD1-44 
prokMSA_id:84317 Antarctic R-9284 strain R-9284
prokMSA_id:85508 clone 96 
prokMSA_id:88585 Hydrogenophaga sp. clone B-10 AF523058
prokMSA_id:94008 beta- clone Gitt-GS-98 AJ582189
2.28.2.9.4.4 STR.T41_SUBGROUP 1 seq
2.28.2.9.4.4.8006 OTU 1 seq
prokMSA_id:6969 clone T96
2.28.2.9.4.5 AQSP.GRACILE 1 seq
2.28.2.9.4.5.8027 OTU 1 seq
prokMSA_id:6974 Aquaspirillum gracile str. D4 ATCC 19624
2.28.2.9.4.6 STR.BERLIN7_SUBGROUP 1 seq
2.28.2.9.4.6.8028 OTU 1 seq
prokMSA_id:6975 unnamed organism
2.28.2.9.4.8 RHF.FERMENTANS_SUBGROUP 108 seqs
2.28.2.9.4.8.7662 OTU 1 seq
prokMSA_id:62979 Aquaspirillum sp. clone T5-1 rrn 
2.28.2.9.4.8.7704 OTU 1 seq
prokMSA_id:72635 beta clone PRD01b009B 
2.28.2.9.4.8.7705 OTU 1 seq
prokMSA_id:81902 clone KD4-7 
2.28.2.9.4.8.7725 OTU 1 seq
prokMSA_id:82574 beta clone TLM04/TLMdgge03 
2.28.2.9.4.8.7746 OTU 1 seq
prokMSA_id:70503 FukuN55 
2.28.2.9.4.8.7775 OTU 1 seq
prokMSA_id:6999 str. D8
2.28.2.9.4.8.7786 OTU 1 seq
prokMSA_id:7005 Polaromonas vacuolata str. 34-P
2.28.2.9.4.8.7801 OTU 1 seq
prokMSA_id:84443 beta clone TLM05/TLMdgge10 
2.28.2.9.4.8.7822 OTU 16 seqs
prokMSA_id:7006 str. from Lake Gossenkoellesee
prokMSA_id:18901 clone RB13C13 
prokMSA_id:51248 clone RA13C10 
prokMSA_id:76891 Coccomonas naphthalovorans 
prokMSA_id:81748 clone KD4-57 
prokMSA_id:82777 clone 3 
prokMSA_id:82904 clone 34 
prokMSA_id:83234 clone 124 
prokMSA_id:83874 clone 95 
prokMSA_id:84106 clone 44 
prokMSA_id:84163 clone 61 
prokMSA_id:84478 clone 38 
prokMSA_id:85176 clone 59 
prokMSA_id:85808 clone 72 
prokMSA_id:86525 clone 75 
prokMSA_id:86562 clone 27 
2.28.2.9.4.8.7821 OTU 1 seq
prokMSA_id:23857 Banisveld landfill BVB72 
2.28.2.9.4.8.7829 OTU 11 seqs
prokMSA_id:7033 Xylophilus ampelinus ATCC 33914
prokMSA_id:22998 Xylophilus ampelinus strain DSM 7250
prokMSA_id:51397 Beta A0637 
prokMSA_id:53922 beta clone 16 
prokMSA_id:59726 Variovorax sp. WDL1 
prokMSA_id:71257 beta clone PRD01a007B 
prokMSA_id:72353 beta clone PRD01b001B 
prokMSA_id:72406 beta clone PRD01b002B 
prokMSA_id:74457 beta clone PRD01b004B 
prokMSA_id:78615 Comamonadaceae clone EarCan103 AY189630
prokMSA_id:81851 Variovorax paradoxus clone 1-95 AY169432
2.28.2.9.4.8.7847 OTU 1 seq
prokMSA_id:81130 clone KD2-104 
2.28.2.9.4.8.7920 OTU 2 seqs
prokMSA_id:24121 beta clone Spb98
prokMSA_id:73322 clone 25/4-32 AJ007642
2.28.2.9.4.8.7928 OTU 1 seq
prokMSA_id:82193 clone KD5-43 
2.28.2.9.4.8.7941 OTU 1 seq
prokMSA_id:46854 clone RB9C10 
2.28.2.9.4.8.7986 OTU 11 seqs
prokMSA_id:39868 clone RB7C2 
prokMSA_id:44459 clone RB13C6 
prokMSA_id:45498 clone RB13C10 
prokMSA_id:50642 clone RB9C6 
prokMSA_id:80799 Arctic sea ice ARK10281 
prokMSA_id:81368 clone ZZ9C2 
prokMSA_id:81427 clone ZZ9C5 
prokMSA_id:81879 clone ZZ9C12 
prokMSA_id:81934 clone ZZ9C11 
prokMSA_id:82365 clone ZZ9C20 
prokMSA_id:82413 clone ZZ12C5 
2.28.2.9.4.8.8045 OTU 1 seq
prokMSA_id:6988 clone T67
2.28.2.9.4.8.8057 OTU 1 seq
prokMSA_id:6987 clone T73
2.28.2.9.4.8.8065 OTU 1 seq
prokMSA_id:51377 SY6-105 
2.28.2.9.4.8.8067 OTU 11 seqs
prokMSA_id:62408 beta clone FTL236 
prokMSA_id:81090 clone KD5-110 
prokMSA_id:81503 clone KD4-83 
prokMSA_id:81515 clone KD4-45 
prokMSA_id:81758 clone KD2-60 
prokMSA_id:82256 clone KD4-65 
prokMSA_id:82291 clone KD3-141 
prokMSA_id:82377 clone KD1-118 
prokMSA_id:82828 clone 161 
prokMSA_id:83945 Antarctic R-7724 strain R-7724
prokMSA_id:84889 clone 50 
2.28.2.9.4.8.8083 OTU 1 seq
prokMSA_id:6994 clone LB3-27
2.28.2.9.4.8.8115 OTU 1 seq
prokMSA_id:44278 SY6-67 
2.28.2.9.4.8.8117 OTU 1 seq
prokMSA_id:36075 beta clone 08 
2.28.2.9.4.8.8139 OTU 26 seqs
prokMSA_id:6904 Comamonas acidovorans IAM 12409
prokMSA_id:6905 Comamonas MC1 str. MC1
prokMSA_id:7073 Acidovorax anthurii str. CFBP 3232. AJ007013
prokMSA_id:18730 beta clone Elb263
prokMSA_id:20305 beta clone Elb154
prokMSA_id:22797 Variovorax sp. clone KL-93-1-6 
prokMSA_id:29558 rape rhizosphere wr0041 
prokMSA_id:33410 beta clone BIvii32 AJ318196
prokMSA_id:33769 clone RB7C8 AF407386
prokMSA_id:48031 Rape rhizosphere tsb068 
prokMSA_id:62983 Variovorax sp. clone T6-5 rrn 
prokMSA_id:79891 clone KD4-2 AY188310
prokMSA_id:80703 clone ARKMP-77 
prokMSA_id:80790 clone ARKMP-16 AF468326
prokMSA_id:81482 clone KD7-112 AY218703
prokMSA_id:81834 clone KD1-133 
prokMSA_id:81969 clone KD1-19 AY218556
prokMSA_id:88367 Comamonadaceae clone G-5 AF523029
prokMSA_id:88852 Glacier FJS17 AY315175
prokMSA_id:89052 Glacier FXS1 AY315177
prokMSA_id:89506 Comamonadaceae clone G-2 AF523052
prokMSA_id:89522 Glacier FJS31 AY315178
prokMSA_id:89727 Comamonadaceae clone B-21 AF523019
prokMSA_id:89861 Glacier FXS33 AY315176
prokMSA_id:89980 Glacier FJI50 AY315174
prokMSA_id:90133 Comamonadaceae clone D-7 AF523015
2.28.2.9.4.8.8138 OTU 13 seqs
prokMSA_id:6995 Aquaspirillum delicatum str. 146 LMG 4328
prokMSA_id:6997 Pseudomonas lanceolata ATCC 14669
prokMSA_id:21463 clone TAF-A31 AY038710
prokMSA_id:25053 clone FBR-E AJ319679
prokMSA_id:25979 clone GOUTB19 
prokMSA_id:43083 clone HTA10 
prokMSA_id:50976 oxSCC-4 AJ387862
prokMSA_id:56377 beta clone ccs221 
prokMSA_id:59902 beta clone ccslm256 
prokMSA_id:62982 Aquaspirillum sp. clone T5-4 rrn 
prokMSA_id:62986 Aquaspirillum sp. clone T8-4 rrn 
prokMSA_id:80304 clone ARKMP-51 AF468333
prokMSA_id:88413 Comamonadaceae isolate ODP1176A22X_18_B AY191346
2.28.2.9.4.10 VRV.PARADOXUS_SUBGROUP 26 seqs
2.28.2.9.4.10.7689 OTU 1 seq
prokMSA_id:41200 Beta A0837 
2.28.2.9.4.10.7745 OTU 1 seq
prokMSA_id:58864 UNSW5 
2.28.2.9.4.10.7856 OTU 7 seqs
prokMSA_id:35360 Variovorax paradoxus strain DSM 66
prokMSA_id:50112 Variovorax sp. 34 
prokMSA_id:62971 Variovorax sp. clone 81-4 rrn 
prokMSA_id:62974 Variovorax sp. clone 84-23 rrn 
prokMSA_id:62976 Variovorax sp. clone 84-3 rrn 
prokMSA_id:78833 Variovorax sp. isolate 4f48 
prokMSA_id:82437 Variovorax paradoxus clone 1-94 
2.28.2.9.4.10.7882 OTU 1 seq
prokMSA_id:56155 Variovorax sp. clone 83-5 rrn 
2.28.2.9.4.10.7964 OTU 1 seq
prokMSA_id:86368 clone 76 
2.28.2.9.4.10.7978 OTU 15 seqs
prokMSA_id:7022 Variovorax paradoxus IAM 12373
prokMSA_id:7028 Variovorax paradoxus IAM 12373
prokMSA_id:7029 Variovorax WFF52 str. WFF52
prokMSA_id:29134 Variovorax sp. HAB-24 
prokMSA_id:31737 Variovorax sp. HAB-21 
prokMSA_id:41243 Variovorax sp. HAB-27 
prokMSA_id:43527 Variovorax sp. HAB-30 
prokMSA_id:47559 Variovorax sp. HAB-29 
prokMSA_id:49651 Variovorax sp. HAB-23 
prokMSA_id:58871 Beta '#33 spreading' 
prokMSA_id:60338 clone Nap240 
prokMSA_id:71064 Beta '#33 clear' 
prokMSA_id:74636 WD2115 clone WD2115
prokMSA_id:78024 Variovorax sp. TUT1027 
prokMSA_id:86262 Variovorax sp. MN 45.2b.1 strain MN 45.2b.1
2.28.2.9.4.12 XP.AMPELINUS_SUBGROUP 6 seqs
2.28.2.9.4.12.7719 OTU 1 seq
prokMSA_id:81611 clone KD2-46 
2.28.2.9.4.12.7739 OTU 1 seq
prokMSA_id:45606 BA128 
2.28.2.9.4.12.7849 OTU 1 seq
prokMSA_id:7034 clone T15
2.28.2.9.4.12.7850 OTU 1 seq
prokMSA_id:7035 clone T65
2.28.2.9.4.12.7851 OTU 1 seq
prokMSA_id:7036 clone T59
2.28.2.9.4.12.8025 OTU 1 seq
prokMSA_id:38267 WD291 clone WD291
2.28.2.9.4.13 AV.AVENAE_SUBGROUP 182 seqs
2.28.2.9.4.13.7735 OTU 1 seq
prokMSA_id:78738 Acidovorax sp
2.28.2.9.4.13.7888 OTU 119 seqs
prokMSA_id:6941 Hydrogenophaga flava CCUG 1658
prokMSA_id:6942 Hydrogenophaga flava DSM 619
prokMSA_id:6943 Hydrogenophaga pseudoflava str. GA3 ATCC 33668
prokMSA_id:6945 clone SJA-155
prokMSA_id:6949 Hydrogenophaga palleronii str. S1 DSM 63 . AF019073
prokMSA_id:6954 str. T25. X95836
prokMSA_id:6955 str. mz1L
prokMSA_id:6956 unnamed organism
prokMSA_id:6957 clone T25. Z93971
prokMSA_id:6958 clone T19
prokMSA_id:6962 clone 19523
prokMSA_id:6965 str. T41. X95838
prokMSA_id:6967 clone T71
prokMSA_id:6968 clone T83
prokMSA_id:6970 clone T41. Z93973
prokMSA_id:6971 clone T70
prokMSA_id:6972 clone T47
prokMSA_id:6979 Rhodoferax fermentans str. FR3
prokMSA_id:6980 Rhodoferax fermentans str. FR2
prokMSA_id:7037 Ramlibacter tataouinensis TTB310 AF144383
prokMSA_id:7046 unnamed organism. AF035049
prokMSA_id:7056 Acidovorax temperans CCUG 11779
prokMSA_id:7057 str. BrG1
prokMSA_id:7058 str. BrG4
prokMSA_id:19472 beta clone:TSL-2-3 AB076881
prokMSA_id:20007 beta clone:OS1L-1 AB076860
prokMSA_id:21895 Arsenite-oxidizing NT-14 
prokMSA_id:22529 Acidovorax sp. KSP2 
prokMSA_id:24115 beta clone:OS1L-19 AB076871
prokMSA_id:24701 beta clone:TSL-1-7 AB076879
prokMSA_id:25859 beta clone:OS1L-18 AB076870
prokMSA_id:27570 Beta OS-19 
prokMSA_id:28287 beta clone:OS1L-20 AB076872
prokMSA_id:30654 Hydrogenophaga flava strain DSM 619
prokMSA_id:31108 sludge H21 
prokMSA_id:31610 beta clone 36-111 AF351224
prokMSA_id:32764 beta clone:TSL-2-2 AB076880
prokMSA_id:34909 beta clone Spb249
prokMSA_id:35165 GKS2-122 
prokMSA_id:39244 Beta K601 strain K601
prokMSA_id:39467 Beta OS-9 
prokMSA_id:40028 Arsenite-oxidizing NT-6 
prokMSA_id:40752 Ramlibacter henchirensis AF439400
prokMSA_id:41470 Comamonas testosteroni SB2 AY050494
prokMSA_id:41585 beta clone:TSL-1-1 AB076876
prokMSA_id:42753 Arsenite-oxidizing NT-5 AY027498
prokMSA_id:45318 beta clone:OS1L-6 AB076864
prokMSA_id:47512 Hydrogenophaga pseudoflava strain DSM 1034
prokMSA_id:50786 epsilon 1016 
prokMSA_id:51135 Acidovorax sp. KSP1 
prokMSA_id:52575 WD2100 clone WD2100 AJ292623
prokMSA_id:55345 Acidovorax sp. 'smarlab 133815' 
prokMSA_id:55628 clone:R6-01
prokMSA_id:56031 beta clone DC11-51-0 
prokMSA_id:58604 Comamonas sp. SFCD1 AY134850
prokMSA_id:59344 clone HP1B35 AF502223
prokMSA_id:61807 beta clone CLs95 
prokMSA_id:61820 beta clone CLi96 AF529344
prokMSA_id:61826 beta clone CLi60 
prokMSA_id:61833 beta clone CLi28 
prokMSA_id:62392 beta clone FTLM27 
prokMSA_id:62968 clone LPB10 AF527581
prokMSA_id:65472 clone a13103 AY102310
prokMSA_id:66109 beta clone:KB17 AB074944
prokMSA_id:66230 Acidovorax avenae isolate C1 AF508114
prokMSA_id:66684 Comamonas terrigena strain LMG 5323 AJ430348
prokMSA_id:66952 Acidovorax sp. C1 strain C1 AJ457191
prokMSA_id:68619 clone KRA30+15 
prokMSA_id:69400 Comamonadaceae BP-1b 
prokMSA_id:70139 Comamonadaceae PIV-3D strain PIV-3D
prokMSA_id:71078 1484 bp
prokMSA_id:72267 beta clone PRD01b008B 
prokMSA_id:72607 beta clone PRD01a008B AF289156
prokMSA_id:73303 clone GOUTB7 
prokMSA_id:73849 Comamonadaceae BP-1 
prokMSA_id:73890 Bromate-reducing B7 
prokMSA_id:76513 beta clone Gitt-KF-42 AJ532685
prokMSA_id:76907 earthworm intestine clone wi89 AY154496
prokMSA_id:81589 clone ZZ14C11 
prokMSA_id:81772 clone KD8-125 AY218684
prokMSA_id:82958 Acidovorax sp. clone 11.2-15
prokMSA_id:83818 Acidovorax sp. clone 4.7-1
prokMSA_id:84159 Acidovorax sp. clone 4.3-1
prokMSA_id:86274 Acidovorax sp. clone 4.2-9
prokMSA_id:88128 Hydrogenophaga sp. clone D-20 AF523050
prokMSA_id:88170 DSSD38 AY328737
prokMSA_id:88200 Hydrogenophaga sp. clone D-17 AF523048
prokMSA_id:88425 Hydrogenophaga sp. clone B-3 AF523000
prokMSA_id:88667 DSSD96 AY328793
prokMSA_id:88790 DSSD22 AY328721
prokMSA_id:88831 Comamonadaceae clone B-5 AF523023
prokMSA_id:88878 Hydrogenophaga sp. clone B-20 AF523021
prokMSA_id:88897 DSSD17 AY328716
prokMSA_id:89022 DSSD28 AY328727
prokMSA_id:89066 DSSD37 AY328736
prokMSA_id:89279 DSSD73 AY328771
prokMSA_id:89333 Hylemonella sp. WQH1 isolate WQH1 AJ565430
prokMSA_id:89424 DSSD24 AY328723
prokMSA_id:89461 DSSD85 AY328782
prokMSA_id:89504 Hydrogenophaga sp. clone H-12 AF523009
prokMSA_id:89666 DSSD35 AY328734
prokMSA_id:89678 DSSD89 AY328786
prokMSA_id:89752 DSSD93 AY328790
prokMSA_id:89840 DSSD94 AY328791
prokMSA_id:89970 Hylemonella gracilis isolate WQT2 AJ565424
prokMSA_id:90034 DSSD83 AY328780
prokMSA_id:90056 DSSD77 AY328775
prokMSA_id:90139 Hydrogenophaga sp. clone B-11 AF523054
prokMSA_id:90164 DSSD99 AY328796
prokMSA_id:90243 DSSD36 AY328735
prokMSA_id:90313 DSSD14 AY328713
prokMSA_id:90350 DSSD2 AY328702
prokMSA_id:90602 Hydrogenophaga sp. clone B-6 AF523037
prokMSA_id:90625 DSSD43 AY328741
prokMSA_id:90735 DSSD98 AY328795
prokMSA_id:90742 DSSD79 AY328776
prokMSA_id:92030 Acidovorax sp. 040703/8067L AY360350
prokMSA_id:95932 clone COB P5-8 AY160868
prokMSA_id:97627 Acidovorax sp. AHL 5 AY379977
2.28.2.9.4.13.7904 OTU 1 seq
prokMSA_id:76621 beta clone Gitt-KF-21
2.28.2.9.4.13.7919 OTU 1 seq
prokMSA_id:7061 str. rM4
2.28.2.9.4.13.7949 OTU 1 seq
prokMSA_id:66240 Variovorax paradoxus isolate TG27 
2.28.2.9.4.13.7982 OTU 1 seq
prokMSA_id:80070 clone KD1-99 
2.28.2.9.4.13.7987 OTU 3 seqs
prokMSA_id:7062 str. rM9
prokMSA_id:7063 Comamonas sp. str. MBIC3885
prokMSA_id:28959 Acidovorax sp. OS-6 
2.28.2.9.4.13.7995 OTU 1 seq
prokMSA_id:78916 Ottowia thiooxidans strain K11T
2.28.2.9.4.13.8003 OTU 1 seq
prokMSA_id:17198 clone AF1-8 
2.28.2.9.4.13.8009 OTU 1 seq
prokMSA_id:64871 clone 81
2.28.2.9.4.13.8012 OTU 5 seqs
prokMSA_id:7052 Acidovorax konjaci str. K2 ATCC 33996
prokMSA_id:7053 Acidovorax konjaci str. K2 ICMP 7733
prokMSA_id:7064 Acidovorax IMI 357678 str. IMI 357678
prokMSA_id:52263 Acidovorax konjaci strain DSM 7481
prokMSA_id:64550 Acidovorax valerianelle strain CFBP 4730
2.28.2.9.4.13.8018 OTU 8 seqs
prokMSA_id:7074 Acidovorax delafieldii ATCC 17505
prokMSA_id:7076 Acidovorax 7078 str. 7078
prokMSA_id:24480 0803 filamentous strain Ben04B
prokMSA_id:24938 0803 filamentous strain Ben05B
prokMSA_id:37472 Acidovorax delafieldii strain DSM 50263
prokMSA_id:42288 Acidovorax sp. BSB421 
prokMSA_id:45559 SJA-23 clone SJA-23
prokMSA_id:84438 clone 151 
2.28.2.9.4.13.8020 OTU 1 seq
prokMSA_id:74685 Acidovorax wohlfahrtii strain B2/74
2.28.2.9.4.13.8021 OTU 8 seqs
prokMSA_id:7038 Acidovorax facilis CCUG 2113
prokMSA_id:7077 str. P51
prokMSA_id:19277 Acidovorax sp. UFZ-B530 
prokMSA_id:19406 rape rhizosphere wr0020 
prokMSA_id:24374 Acidovorax facilis strain DSM 649
prokMSA_id:25119 Acidovorax sp. UFZ-B517 
prokMSA_id:49770 clone GOUTB16 
prokMSA_id:76895 beta clone S15A-MN11
2.28.2.9.4.13.8022 OTU 6 seqs
prokMSA_id:7047 Acidovorax avenae subsp. cattleyae NCPPB 961
prokMSA_id:7054 Acidovorax avenae subsp. citrulli ATCC 29625
prokMSA_id:7067 Acidovorax avenae subsp. avenae ATCC 19860
prokMSA_id:7070 Acidovorax avenae subsp. cattleyae ICMP 2826
prokMSA_id:7071 Acidovorax avenae subsp. avenae ICMP 3183
prokMSA_id:7072 Acidovorax avenae subsp. citrulli ICMP 7500
2.28.2.9.4.13.8031 OTU 1 seq
prokMSA_id:7068 str. rJ10
2.28.2.9.4.13.8046 OTU 5 seqs
prokMSA_id:7043 Acidovorax defluvii str. BSB411
prokMSA_id:7044 Acidovorax G7A1 str. G7A1
prokMSA_id:7045 Acidovorax G8B1 str. G8B1
prokMSA_id:81755 clone ZZ15C1 
prokMSA_id:82409 clone ZZ15C2 
2.28.2.9.4.13.8049 OTU 1 seq
prokMSA_id:7040 clone T22
2.28.2.9.4.13.8051 OTU 2 seqs
prokMSA_id:7041 clone T36
prokMSA_id:7106 str. T36. X97598
2.28.2.9.4.13.8071 OTU 1 seq
prokMSA_id:33590 Banisveld landfill BVB58 
2.28.2.9.4.13.8076 OTU 10 seqs
prokMSA_id:71849 clone 19512 
prokMSA_id:73233 clone 19510 AF097787
prokMSA_id:75555 beta isolate WB-56 AY157103
prokMSA_id:76075 beta isolate HS-41 AY157127
prokMSA_id:76221 beta isolate PG-40 AY157141
prokMSA_id:76424 beta isolate WD-41 AY157077
prokMSA_id:76947 beta isolate WD-40 AY157080
prokMSA_id:77013 beta isolate WB-40 AY157095
prokMSA_id:77028 beta isolate WB-68 AY157101
prokMSA_id:77251 beta isolate WB-41 AY157086
2.28.2.9.4.13.8079 OTU 2 seqs
prokMSA_id:83933 Acidovorax sp. isolate EfNe2
prokMSA_id:83935 Acidovorax sp. isolate EfNe1
2.28.2.9.4.13.8088 OTU 1 seq
prokMSA_id:7060 str. rJ12
2.28.2.9.4.13.8152 OTU 1 seq
prokMSA_id:83899 Acidovorax sp. clone Ol2-2
2.28.2.9.4.14 AQSP.PSYCHROPHILUM_SUBGROUP 29 seqs
2.28.2.9.4.14.7807 OTU 20 seqs
prokMSA_id:7088 Aquaspirillum psychrophilum str. CA 1 LMG 5408
prokMSA_id:7090 str. rJ1
prokMSA_id:7091 str. rJ16
prokMSA_id:7092 str. rM5
prokMSA_id:7093 str. rA10
prokMSA_id:7096 Aquaspirillum metamorphum LMG 4339
prokMSA_id:7097 clone T33
prokMSA_id:7098 Aquaspirillum metamorphum DSM 1837
prokMSA_id:16841 clone GIF15 
prokMSA_id:34473 clone GIF2 
prokMSA_id:35415 Beta NOS3 
prokMSA_id:35695 clone d034 
prokMSA_id:44893 Beta NOS8 
prokMSA_id:45919 clone GIF5 
prokMSA_id:47038 clone GOUTA11 
prokMSA_id:52690 clone d078 
prokMSA_id:58579 Comamonadaceae PIV-8-1 strain PIV-8-1
prokMSA_id:70987 Comamonadaceae PIV-8-2 strain PIV-8-2
prokMSA_id:79199 clone KD8-10 
prokMSA_id:81909 clone KD1-96 
2.28.2.9.4.14.7863 OTU 3 seqs
prokMSA_id:7101 Aquaspirillum sinuosum LMG 4393
prokMSA_id:66300 Aquaspirillum anulus 
prokMSA_id:66303 Aquaspirillum giesbergeri 
2.28.2.9.4.14.7879 OTU 1 seq
prokMSA_id:7094 clone T69
2.28.2.9.4.14.7916 OTU 1 seq
prokMSA_id:80589 clone KD1-23 
2.28.2.9.4.14.7946 OTU 1 seq
prokMSA_id:81545 clone KD2-15 
2.28.2.9.4.14.8043 OTU 1 seq
prokMSA_id:37583 clone d156 
2.28.2.9.4.14.8098 OTU 1 seq
prokMSA_id:35320 beta clone:OS1L-5
2.28.2.9.4.14.8147 OTU 1 seq
prokMSA_id:7089 Comamonas sp. str. R7
2.28.2.9.5 LEPTOTHRIX_SUBGROUP 168 seqs
2.28.2.9.5.1 RUB.GELATINOSUS_SUBGROUP 26 seqs
2.28.2.9.5.1.7686 OTU 1 seq
prokMSA_id:29302 beta clone Elb252
2.28.2.9.5.1.7812 OTU 1 seq
prokMSA_id:33614 clone LO13.11 
2.28.2.9.5.1.7827 OTU 1 seq
prokMSA_id:75493 clone HC-23 
2.28.2.9.5.1.7872 OTU 4 seqs
prokMSA_id:7120 clone AI301. U45674
prokMSA_id:7172 clone AI303. U45675
prokMSA_id:22856 beta clone Spb03
prokMSA_id:65622 soil clone S1200 AF507778
2.28.2.9.5.1.7871 OTU 1 seq
prokMSA_id:26649 beta clone Elb271
2.28.2.9.5.1.7908 OTU 1 seq
prokMSA_id:51718 beta clone Elb197
2.28.2.9.5.1.7990 OTU 1 seq
prokMSA_id:51665 Beta A0640 
2.28.2.9.5.1.8002 OTU 4 seqs
prokMSA_id:7115 Rubrivivax gelatinosus str. ATH 2.2.1 ATCC 17011
prokMSA_id:7118 Rubrivivax gelatinosus str. IL144
prokMSA_id:7122 Rubrivivax gelatinosus str. A3
prokMSA_id:68337 Rubrivivax gelatinosus strain OK3O3 
2.28.2.9.5.1.8038 OTU 1 seq
prokMSA_id:30949 Crater Lake CL500-36 
2.28.2.9.5.1.8055 OTU 1 seq
prokMSA_id:21288 clone TRS7
2.28.2.9.5.1.8074 OTU 1 seq
prokMSA_id:73442 synthetic wastewater tmbr15-22 complete 
2.28.2.9.5.1.8082 OTU 1 seq
prokMSA_id:81087 clone KD5-22 
2.28.2.9.5.1.8087 OTU 1 seq
prokMSA_id:7110 clone T10
2.28.2.9.5.1.8091 OTU 1 seq
prokMSA_id:21411 beta clone Elb136
2.28.2.9.5.1.8102 OTU 1 seq
prokMSA_id:7124 str. DhA-73
2.28.2.9.5.1.8100 OTU 1 seq
prokMSA_id:7123 Alcaligenes latus IAM 12599
2.28.2.9.5.1.8113 OTU 2 seqs
prokMSA_id:17679 sludge A26b 
prokMSA_id:48162 sludge A2 
2.28.2.9.5.1.8121 OTU 1 seq
prokMSA_id:38002 sludge A15 
2.28.2.9.5.1.8140 OTU 1 seq
prokMSA_id:73389 Leptothrix sp. oral clone AW043 
2.28.2.9.5.2 LPTX.MOBILIS_SUBGROUP 27 seqs
2.28.2.9.5.2.7785 OTU 1 seq
prokMSA_id:51243 beta OM156 
2.28.2.9.5.2.7884 OTU 1 seq
prokMSA_id:40205 beta clone Elb37
2.28.2.9.5.2.7917 OTU 3 seqs
prokMSA_id:7133 str. DhA-71
prokMSA_id:79664 Schlegelia thermodepolymerans 
prokMSA_id:80077 Caenibacterium thermophilum strain N2-680T
2.28.2.9.5.2.7944 OTU 5 seqs
prokMSA_id:26793 Limnobacter thiooxidans strain CS-K2 AJ289885
prokMSA_id:27619 rape rhizosphere wr0017 
prokMSA_id:89016 Limnobacter sp. clone I-1 AF523005
prokMSA_id:90229 Drinking water MB16 AY328846
prokMSA_id:90492 Limnobacter sp. clone D-15 AF522999
2.28.2.9.5.2.7961 OTU 1 seq
prokMSA_id:41229 isolate HuCC33
2.28.2.9.5.2.8030 OTU 1 seq
prokMSA_id:17255 Ralstonia sp. P-4CB2 
2.28.2.9.5.2.8047 OTU 13 seqs
prokMSA_id:7129 Sphaerotilus IF4 str. IF4. AF072914
prokMSA_id:7130 Sphaerotilus IF5 str. IF5
prokMSA_id:7131 Sphaerotilus IF9 str. IF9
prokMSA_id:7132 Sphaerotilus IF14 str. IF14
prokMSA_id:79648 Sphaerotilus sp. L6 
prokMSA_id:79669 Sphaerotilus sp. L12 AB087566
prokMSA_id:79735 Sphaerotilus sp. L19 
prokMSA_id:79774 Sphaerotilus sp. L7 AB087564
prokMSA_id:79792 Sphaerotilus sp. L1 AB087560
prokMSA_id:80068 Sphaerotilus sp. L2 
prokMSA_id:80513 Sphaerotilus sp. L3 AB087562
prokMSA_id:80525 Sphaerotilus sp. L8 
prokMSA_id:80616 Sphaerotilus sp. L13 AB087567
2.28.2.9.5.2.8104 OTU 1 seq
prokMSA_id:7126 Leptothrix mobilis str. Feox-1 DSM 10617
2.28.2.9.5.2.8107 OTU 1 seq
prokMSA_id:7127 unnamed organism
2.28.2.9.5.3 SPT.NATANS_SUBGROUP 1 seq
2.28.2.9.5.3.8070 OTU 1 seq
prokMSA_id:7139 Sphaerotilus natans str. 565
2.28.2.9.5.4 LPTX.DISCOPHORA_SUBGROUP 114 seqs
2.28.2.9.5.4.7738 OTU 2 seqs
prokMSA_id:7164 Leptothrix discophora str. SS-1 ATCC 43182
prokMSA_id:7173 Leptothrix discophora str. SS-1 ATCC 43182
2.28.2.9.5.4.7741 OTU 2 seqs
prokMSA_id:7170 Leptothrix discophora str. SP-6 ATCC 51168
prokMSA_id:7171 Leptothrix cholodnii str. Mulder 5 CCM 1827
2.28.2.9.5.4.7742 OTU 2 seqs
prokMSA_id:20107 beta clone Elb101 AJ421920
prokMSA_id:29425 beta clone Elb123
2.28.2.9.5.4.7790 OTU 1 seq
prokMSA_id:61836 beta clone CLi117 
2.28.2.9.5.4.7816 OTU 1 seq
prokMSA_id:82250 clone KD3-41 
2.28.2.9.5.4.7820 OTU 1 seq
prokMSA_id:45838 Beta A1004 
2.28.2.9.5.4.7855 OTU 1 seq
prokMSA_id:7174 clone RB11
2.28.2.9.5.4.7860 OTU 1 seq
prokMSA_id:7175 Leptothrix sp. str. HS
2.28.2.9.5.4.7876 OTU 1 seq
prokMSA_id:31150 clone AF2.2 
2.28.2.9.5.4.7929 OTU 1 seq
prokMSA_id:7147 clone VC2.1 Bac29
2.28.2.9.5.4.7943 OTU 1 seq
prokMSA_id:7151 Aquabacterium parvum str. B6
2.28.2.9.5.4.7965 OTU 97 seqs
prokMSA_id:7109 Ideonella dechloratans CCUG 30898
prokMSA_id:7145 Roseateles depolymerans str. 61A DSM 11813
prokMSA_id:7146 DSM 654. AB021407
prokMSA_id:7148 str. MBIC3293
prokMSA_id:7149 Roseateles depolymerans str. 61B2 DSM 11814
prokMSA_id:7150 Matsuebacter chitosanotabidus
prokMSA_id:7154 Aquabacterium commune str. B8
prokMSA_id:7155 str. BrG2
prokMSA_id:7156 Aquabacterium Aqua2 str. Aqua2
prokMSA_id:7157 Roseateles depolymerans str. 61B2
prokMSA_id:7160 str. MC11
prokMSA_id:7161 str. MC12
prokMSA_id:7163 Roseateles depolymerans str. 61B2 DSM 11814
prokMSA_id:7165 Aquabacterium citratiphilum str. B4
prokMSA_id:19409 Beta A1040 AF236008
prokMSA_id:19861 Pseudomonas saccharophila AF368755
prokMSA_id:21295 beta clone pA3178 AF324205
prokMSA_id:24241 mle1-19 AF280853
prokMSA_id:24880 Beta S-N1-18A AB074727
prokMSA_id:25579 beta clone Spb111
prokMSA_id:28560 beta clone SM1G08 AF445700
prokMSA_id:30280 beta clone BIci13
prokMSA_id:34633 beta clone Spb132
prokMSA_id:35403 Leptothrix sp. oral clone AV011a 
prokMSA_id:37495 Green Bay ferromanganous micronodule MNE12 AF293003
prokMSA_id:37907 Matsuebacter chitosanotabidus 
prokMSA_id:37911 Matsuebacter sp. 13 
prokMSA_id:38900 Ideonella sp. B511 AB049106
prokMSA_id:39488 Ideonella sp. B508-1 AB049105
prokMSA_id:39593 Beta S-N0-9A AB074725
prokMSA_id:40398 Ideonella sp. B513 AB049107
prokMSA_id:40534 Beta A0647 AF236007
prokMSA_id:40687 beta clone Spb298
prokMSA_id:42662 clone p-3415-SwA2 AF371861
prokMSA_id:42874 clone GOUTA14 
prokMSA_id:43210 Beta A0618 AF236006
prokMSA_id:43917 sludge A37 AF234753
prokMSA_id:45926 Burkholderia cepacia AF244133
prokMSA_id:48820 beta clone pA42B412 AF324206
prokMSA_id:51521 beta clone Elb59 AJ421916
prokMSA_id:51906 beta clone BIci13b
prokMSA_id:55284 beta clone Michigan-11 AJ319543
prokMSA_id:56024 beta clone Thailand-3-QC AJ319572
prokMSA_id:56335 beta clone Michigan-6
prokMSA_id:58127 Ellin321 AF498703
prokMSA_id:61846 beta clone CLi22 
prokMSA_id:64751 beta clone Thailand-4-QC AJ319573
prokMSA_id:64752 beta clone Thailand-5-QC
prokMSA_id:64756 beta clone Thailand-12-QC AJ319568
prokMSA_id:64758 beta clone Thailand-19-QC AJ319570
prokMSA_id:64759 beta clone Poland-20-QC AJ319566
prokMSA_id:64763 beta clone Poland-10-QC AJ319562
prokMSA_id:64774 beta clone Poland-18 AJ319548
prokMSA_id:64776 beta clone Michigan-8 AJ319547
prokMSA_id:64779 beta clone Michigan-5 AJ319545
prokMSA_id:65415 clone 8 
prokMSA_id:65432 clone 15 
prokMSA_id:74515 Glacial ice CanDirty12 AF479324
prokMSA_id:74807 WD2102 clone WD2102 AJ292626
prokMSA_id:77923 Beta CTE108 strain CTE108
prokMSA_id:79085 Phenanthrene-degrading 90 AY177371
prokMSA_id:79115 clone csbio160166 AY187391
prokMSA_id:79181 clone csbio160390 AY187348
prokMSA_id:79206 clone csbio160143 AY187389
prokMSA_id:79268 clone csbio160365 AY187349
prokMSA_id:79302 clone KD5-121 
prokMSA_id:79334 clone csbio160307 AY187343
prokMSA_id:79354 clone csbio160193 AY187390
prokMSA_id:79460 clone csbio160321 AY187346
prokMSA_id:79492 clone csbio160367 AY187342
prokMSA_id:79724 Leptothrix sp. L10 
prokMSA_id:80990 clone ARKMP-82 
prokMSA_id:81133 clone ZZ15C9 
prokMSA_id:81341 clone ZZ15C11 
prokMSA_id:81389 clone KD8-118 
prokMSA_id:81741 beta clone ARKMP-94 
prokMSA_id:81953 Variovorax paradoxus clone 1-42 AY169418
prokMSA_id:82480 Comamonadaceae MWH55 
prokMSA_id:84642 Antarctic R-8875 strain R-8875 AJ440994
prokMSA_id:88640 Aquabacterium sp. clone C-19 AF523020
prokMSA_id:88708 Aquabacterium sp. clone D-24 AF523055
prokMSA_id:88758 DSSD55 AY328753
prokMSA_id:88838 Aquabacterium sp. clone D-5 AF523016
prokMSA_id:89073 Aquabacterium sp. clone I-17 AF522997
prokMSA_id:89113 Aquabacterium sp. clone C-12 AF523027
prokMSA_id:89169 Aquabacterium sp. clone C-20 AF523017
prokMSA_id:89220 Aquabacterium sp. clone J-21 AF522998
prokMSA_id:89328 Aquabacterium sp. clone D-11 AF523024
prokMSA_id:89760 Aquabacterium sp. clone C-11 AF523034
prokMSA_id:90197 Aquabacterium sp. clone C-23 AF523043
prokMSA_id:90347 Beta KNU3 AY299334
prokMSA_id:90433 Aquabacterium sp. clone I-18 AF523025
prokMSA_id:90435 Aquabacterium sp. clone D-2 AF523044
prokMSA_id:90472 Aquabacterium sp. clone C-9 AF523004
prokMSA_id:91495 clone W4-B56 AY345493
prokMSA_id:91986 G23 AY345396
prokMSA_id:96716 clone B35 AY375072
2.28.2.9.5.4.8075 OTU 3 seqs
prokMSA_id:19727 beta clone Spb87 AJ422159
prokMSA_id:26468 beta clone Spb293 AJ422175
prokMSA_id:50434 beta clone Spb280
2.28.2.9.6 STR.SBR1074_SUBGROUP 1 seq
2.28.2.9.6.7912 OTU 1 seq
prokMSA_id:29208 clone Tc71 
2.28.2.10 BURKHOLDERIA_GROUP 245 seqs
2.28.2.10.1 BUR.NORIMBERGENSIS_SUBGROUP 28 seqs
2.28.2.10.1.7934 OTU 28 seqs
prokMSA_id:7183 Burkholderia norimbergensis str. R2 DSM 11628 . Y09879
prokMSA_id:7184 Burkholderia IpA-51 str. IpA-51
prokMSA_id:7185 Burkholderia JB1 str. JB1
prokMSA_id:17884 Pandoraea sp. G5056 
prokMSA_id:22226 Pandoraea sp. G7835 
prokMSA_id:25682 Pandoraea sp. H652 AF247698
prokMSA_id:35338 Pandoraea pulmonicola 
prokMSA_id:35988 Pandoraea sp. G8107 
prokMSA_id:46842 Pandoraea sp. G9278 
prokMSA_id:48497 Burkholderia sp. MN 182.2 isolate MN 182.2
prokMSA_id:49796 Pandoraea sp. G3308 AF247691
prokMSA_id:52177 Pandoraea apista strain LMG 16407 AF139173
prokMSA_id:60992 Pandoraea sp. LY AF532595
prokMSA_id:63605 Pandoraea sp. AU1775 
prokMSA_id:70261 Pandoraea sp. G9805 AF247697
prokMSA_id:70742 Pandoraea sp. G3307 
prokMSA_id:70855 Pandoraea sp. G5084 
prokMSA_id:72667 Pandoraea norimbergensis 
prokMSA_id:72789 Pandoraea sputorum 
prokMSA_id:72865 Pandoraea apista strain LMG 18089 AF139172
prokMSA_id:73443 Pandoraea pnomenusa AF139174
prokMSA_id:88090 Pandoraea pnomenusa strain 2001008157 AY268168
prokMSA_id:88183 Pandoraea norimbergensis strain CCUG 39188 AY268174
prokMSA_id:89030 Pandoraea pulmonicola strain CCUG 38759 AY268173
prokMSA_id:89390 Pandoraea apista strain CCUG 38412 AY268172
prokMSA_id:89534 Pandoraea pnomenusa strain CCUG 38742 AY268170
prokMSA_id:90020 Pandoraea sp. CCUG 39680 AY268171
prokMSA_id:90734 Pandoraea sp. 2001032141 AY268169
2.28.2.10.2 MEALYBUG_SYMBIONTS 14 seqs
2.28.2.10.2.7887 OTU 1 seq
prokMSA_id:7186 endosymbiont of mealybug Pseudococcus longispinus
2.28.2.10.2.7897 OTU 1 seq
prokMSA_id:7187 endosymbiont of mealybug Dysmicoccus neobrivipes
2.28.2.10.2.7898 OTU 1 seq
prokMSA_id:7188 endosymbiont of mealybug Pseudococcus maritimus
2.28.2.10.2.7935 OTU 1 seq
prokMSA_id:63946 Candidatus Tremblaya princeps from Vryburgia brevicruris and
2.28.2.10.2.7952 OTU 3 seqs
prokMSA_id:55005 Planococcus citri beta- endosymbiont AF322017
prokMSA_id:63949 Candidatus Tremblaya princeps from Planococcus ficus and 23S
prokMSA_id:63951 Candidatus Tremblaya princeps from Planococcus citri and 23S
2.28.2.10.2.7959 OTU 1 seq
prokMSA_id:63957 Candidatus Tremblaya princeps from Maconellicoccus australie
2.28.2.10.2.7960 OTU 1 seq
prokMSA_id:63958 Candidatus Tremblaya princeps from Ferrisia sp. and 23S gene
2.28.2.10.2.7957 OTU 1 seq
prokMSA_id:63955 Candidatus Tremblaya princeps from Maconellicoccus hirsutus 
2.28.2.10.2.7963 OTU 1 seq
prokMSA_id:63959 Candidatus Tremblaya princeps from Erium globosum and 23S ge
2.28.2.10.2.7985 OTU 1 seq
prokMSA_id:63963 Candidatus Tremblaya princeps from Australicoccus grevilleae
2.28.2.10.2.7983 OTU 1 seq
prokMSA_id:63960 Candidatus Tremblaya princeps from Ferrisia malvastra and 23
2.28.2.10.2.8061 OTU 1 seq
prokMSA_id:42363 Beta-symbiont of Antonina crawii 
2.28.2.10.3 BUR.ANDROPOGONIS_SUBGROUP 7 seqs
2.28.2.10.3.7707 OTU 1 seq
prokMSA_id:18748 clone Tc63 
2.28.2.10.3.7766 OTU 1 seq
prokMSA_id:64015 clone:F31
2.28.2.10.3.7899 OTU 1 seq
prokMSA_id:7189 Burkholderia andropogonis ATCC 23061
2.28.2.10.3.7914 OTU 1 seq
prokMSA_id:7190 Pseudomonas woodsii ATCC 19311
2.28.2.10.3.8077 OTU 2 seqs
prokMSA_id:74893 beta clone GuBH2-AG-43
prokMSA_id:76131 beta clone GuBH2-AD-29
2.28.2.10.3.8086 OTU 1 seq
prokMSA_id:41478 Beta S-Nnd-12A 
2.28.2.10.4 BUR.GLATHEI_SUBGROUP 76 seqs
2.28.2.10.4.7671 OTU 1 seq
prokMSA_id:84108 clone CCU24 
2.28.2.10.4.7680 OTU 1 seq
prokMSA_id:73771 clone p-3623-18B3 
2.28.2.10.4.7681 OTU 1 seq
prokMSA_id:21765 sludge A21b 
2.28.2.10.4.7708 OTU 1 seq
prokMSA_id:39961 Burkholderia sp. STM678 strain STM678
2.28.2.10.4.7727 OTU 3 seqs
prokMSA_id:17531 clone Tc30 
prokMSA_id:44507 clone Tc3 
prokMSA_id:52348 clone Tc39 AF445105
2.28.2.10.4.7730 OTU 1 seq
prokMSA_id:26920 clone BItii37
2.28.2.10.4.7771 OTU 12 seqs
prokMSA_id:7211 Burkholderia caribensis str. MWAP64. Y17009
prokMSA_id:7212 str. TFD2. AF184927
prokMSA_id:7220 Burkholderia caribiensis str. MWAP84. Y17011
prokMSA_id:7227 Burkholderia glathei str. N 15 LMG 14190
prokMSA_id:7228 Burkholderia glathei str. N 15 LMG 14190
prokMSA_id:7229 Burkholderia glathei str. N 15 ATCC 29195 . AB021374
prokMSA_id:7230 Burkholderia NF100
prokMSA_id:16881 Burkholderia sp. GR34 strain GR34
prokMSA_id:38074 WD2109 clone WD2109 AJ292646
prokMSA_id:40645 Burkholderia sp. STM815 strain STM815 AJ302312
prokMSA_id:41082 Burkholderia sp. S4.9 AF247496
prokMSA_id:50723 Burkholderia sp. NF23 strain NF23
2.28.2.10.4.7782 OTU 10 seqs
prokMSA_id:7213 Burkholderia EN-B3
prokMSA_id:7214 Burkholderia EN-B9
prokMSA_id:7218 str. BD1-33
prokMSA_id:19103 Diazotroph str. BA126 
prokMSA_id:26180 str. 96444 
prokMSA_id:37791 Burkholderia sp. AB119 AF364859
prokMSA_id:69874 Diazotroph str. AB48 AF164043
prokMSA_id:71461 beta clone BIsii8
prokMSA_id:71936 Burkholderia hospita AY040365
prokMSA_id:92786 Burkholderia sp. 14 AY238506
2.28.2.10.4.7818 OTU 1 seq
prokMSA_id:76574 beta clone JG36-TzT-215
2.28.2.10.4.7830 OTU 1 seq
prokMSA_id:38190 WD2106 clone WD2106
2.28.2.10.4.7835 OTU 1 seq
prokMSA_id:49415 Burkholderia sp. PJ431 
2.28.2.10.4.7841 OTU 1 seq
prokMSA_id:7223 Burkholderia RP007 str. RP007
2.28.2.10.4.7848 OTU 1 seq
prokMSA_id:34343 Amoebobacter pedioformis 
2.28.2.10.4.7846 OTU 1 seq
prokMSA_id:7225 unnamed organism
2.28.2.10.4.7895 OTU 2 seqs
prokMSA_id:7215 Burkholderia kuranei
prokMSA_id:7216 Burkholderia brasilensis str. M130
2.28.2.10.4.7969 OTU 6 seqs
prokMSA_id:7202 Burkholderia sp
prokMSA_id:7203 Burkholderia 'SAP II' str. SAP II
prokMSA_id:34989 clone GL182.9 
prokMSA_id:58605 Burkholderia sp. ICD 
prokMSA_id:68457 Symbiont cf. Burkholderia of Acromyrmex octospinosus 
prokMSA_id:78791 Burkholderia sp. 56 
2.28.2.10.4.8011 OTU 22 seqs
prokMSA_id:7192 Burkholderia sp
prokMSA_id:7193 str. TFD6
prokMSA_id:7198 Burkholderia sp. str. DhA-54
prokMSA_id:7209 Burkholderia graminis str. AUS35
prokMSA_id:7210 Burkholderia caryophylli str. MCII-8
prokMSA_id:7221 Burkholderia phenazinium str. 1A LMG 2247
prokMSA_id:17921 WD266 clone WD266
prokMSA_id:19267 Beta A30-1 
prokMSA_id:19558 WD285 clone WD285
prokMSA_id:26306 WD202 clone WD202
prokMSA_id:27725 Burkholderia sp. OY715 strain OY715
prokMSA_id:37450 Burkholderia sp. 13SM strain 13SM
prokMSA_id:40058 Burkholderia sp. HY1 complete 
prokMSA_id:42224 Burkholderia sp. LMG 19076 
prokMSA_id:42336 Burkholderia sp. RW36 strain RW36
prokMSA_id:51147 Beta A40-2 
prokMSA_id:66264 Burkholderia sp. TNFYE-5 
prokMSA_id:73256 Burkholderia sp. LMG 21262 
prokMSA_id:75150 Burkholderia phenazinium isolate Hg 16 
prokMSA_id:75878 Burkholderia phenazinium isolate Hg 10 
prokMSA_id:76456 Burkholderia phenazinium isolate Hg 14 
prokMSA_id:76898 Burkholderia phenazinium isolate Hg 8 
2.28.2.10.4.8059 OTU 1 seq
prokMSA_id:7219 Burkholderia caribiensis str. MWAP71
2.28.2.10.4.8068 OTU 2 seqs
prokMSA_id:7224 Burkholderia caryophylli ATCC 25418
prokMSA_id:7226 Burkholderia caryophylli ATCC 25418
2.28.2.10.4.8069 OTU 3 seqs
prokMSA_id:63247 clone FW145 
prokMSA_id:63263 clone FW2 
prokMSA_id:63267 clone FW66 
2.28.2.10.4.8093 OTU 1 seq
prokMSA_id:36067 Agricultural soil clone SC-I-39 
2.28.2.10.4.8101 OTU 1 seq
prokMSA_id:7197 clone RB23
2.28.2.10.4.8120 OTU 1 seq
prokMSA_id:24899 Burkholderia sp. NAP1 
2.28.2.10.4.8148 OTU 1 seq
prokMSA_id:46075 Agricultural soil clone SC-I-84 
2.28.2.10.5 BUR.THAILANDENSIS_SUBGROUP 13 seqs
2.28.2.10.5.7747 OTU 1 seq
prokMSA_id:7236 Burkholderia mallei str. China 7 ATCC 23344
2.28.2.10.5.7870 OTU 10 seqs
prokMSA_id:7237 Burkholderia thailandensis str. E264 ATCC 700388
prokMSA_id:7238 Burkholderia pseudomallei
prokMSA_id:7239 Burkholderia pseudomallei str. 1026b
prokMSA_id:17136 Burkholderia pseudomallei isolate L2 
prokMSA_id:24062 Burkholderia pseudomallei Ara+ biotype isolate S94019 
prokMSA_id:36691 Burkholderia pseudomallei isolate V685 
prokMSA_id:39013 Burkholderia pseudomallei isolate V688 
prokMSA_id:46605 Burkholderia pseudomallei isolate V684 
prokMSA_id:48735 Burkholderia pseudomallei isolate H1 
prokMSA_id:82150 Burkholderia pseudomallei 
2.28.2.10.5.8095 OTU 2 seqs
prokMSA_id:30439 Scutellospora persica E28 endosymbiont 
prokMSA_id:50390 Scutellospora persica E09 endosymbiont 
2.28.2.10.6 BUR.CEPACIA_SUBGROUP 107 seqs
2.28.2.10.6.7736 OTU 1 seq
prokMSA_id:74696 Pseudomonas sp. 679-2 
2.28.2.10.6.7762 OTU 1 seq
prokMSA_id:50273 Elbe River snow isolate Iso18 
2.28.2.10.6.7813 OTU 1 seq
prokMSA_id:56109 Xanthomonas sp. clone 88_5_1 
2.28.2.10.6.7837 OTU 7 seqs
prokMSA_id:21561 Burkholderia cepacia isolate LS2.4 
prokMSA_id:27839 Burkholderia sp. ON1 strain ON1
prokMSA_id:35609 Burkholderia sp. AB2 
prokMSA_id:45950 Burkholderia cepacia isolate WS11.7 
prokMSA_id:56209 Burkholderia sp. BPC2 
prokMSA_id:77747 Burkholderia pyrrocinia strain R1904
prokMSA_id:78347 Burkholderia pyrrocinia strain R11805
2.28.2.10.6.7918 OTU 1 seq
prokMSA_id:7280 Burkholderia sp
2.28.2.10.6.8037 OTU 1 seq
prokMSA_id:59538 Enrichment culture clone 0.1LB-F 
2.28.2.10.6.8044 OTU 5 seqs
prokMSA_id:27685 Burkholderia sp. CAB-02 
prokMSA_id:32496 Burkholderia cepacia 
prokMSA_id:52847 Burkholderia anthina strain R-4183
prokMSA_id:80730 Burkholderia anthina strain BHS1
prokMSA_id:81718 Burkholderia cepacia strain B9 
2.28.2.10.6.8097 OTU 87 seqs
prokMSA_id:7194 str. TFD3
prokMSA_id:7199 Burkholderia VUN10013 str. VUN 10 013
prokMSA_id:7200 Burkholderia LB400 str. LB400. U86373
prokMSA_id:7242 Burkholderia cepacia str. G4
prokMSA_id:7247 Burkholderia sp
prokMSA_id:7248 Burkholderia multivorans LMG 13010
prokMSA_id:7249 Burkholderia vietnamiensis str. AMMD
prokMSA_id:7250 Burkholderia cepacia str. Ballard 717; Starr PC 25 ATCC 2541
prokMSA_id:7251 Burkholderia multivorans LMG 14293
prokMSA_id:7252 Burkholderia cepacia LMG 12614t2
prokMSA_id:7253 Burkholderia cepacia LMG 14294
prokMSA_id:7254 Burkholderia vietnamiensis str. TVV75 LMG 10929
prokMSA_id:7255 Burkholderia cepacia str. KP24
prokMSA_id:7258 Burkholderia sp. str. MBIC3837
prokMSA_id:7261 Burkholderia vietnamiensis str. TVV75
prokMSA_id:7264 Burkholderia glumae LMG 2196
prokMSA_id:7265 Burkholderia gladioli LMG 11626 . U96934
prokMSA_id:7266 Burkholderia vietnamiensis str. TVV70
prokMSA_id:7267 Burkholderia gladioli ATCC 10248
prokMSA_id:7269 Burkholderia gladioli subsp. gladioli str. NIAS 1065
prokMSA_id:7270 Burkholderia gladioli
prokMSA_id:7271 Burkholderia gladioli
prokMSA_id:7272 Burkholderia plantarii str. AZ 8201 LMG 9035 . U96933
prokMSA_id:7273 Burkholderia pyrrocinia str. 2327 LMG 14191
prokMSA_id:7275 Burkholderia m35b str. m35b
prokMSA_id:7276 Burkholderia C3B1M str. C3B1M
prokMSA_id:7279 Burkholderia cepacia str. Ballard 717; Starr PC 25 ATCC 2541
prokMSA_id:17335 Burkholderia cocovenenans strain ATCC 33664T
prokMSA_id:17796 Burkholderia sp. BM16 complete 
prokMSA_id:19015 Burkholderia sp. S512 strain S512 AJ300688
prokMSA_id:19447 Burkholderia ambifaria 
prokMSA_id:20853 Burkholderia sp. WR19X strain WR19X AJ300693
prokMSA_id:27908 Burkholderia sp. casida 
prokMSA_id:30241 Burkholderia tropicalis strain AB98 
prokMSA_id:31797 Burkholderia sp. JR7B3 
prokMSA_id:32065 Burkholderia sp. SH1 strain SH1a
prokMSA_id:39502 Burkholderia sp. JRB1 
prokMSA_id:40802 Burkholderia cepacia 
prokMSA_id:46233 Burkholderia sp. AB101 
prokMSA_id:48688 Burkholderia cepacia 
prokMSA_id:49014 Burkholderia sp. NCPPB3025 strain NCPPB 3025
prokMSA_id:49852 Burkholderia tropicalis strain Ppe8
prokMSA_id:50006 Burkholderia sp. C4.7 
prokMSA_id:51110 WD2114 clone WD2114
prokMSA_id:53380 Burkholderia sp. S2.1 
prokMSA_id:53682 Burkholderia gladioli 
prokMSA_id:54199 Burkholderia sp. RR8 strain RR8
prokMSA_id:59707 Burkholderia cepacia complete 
prokMSA_id:62903 Pseudomonas 
prokMSA_id:71097 Burkholderia stabilis 
prokMSA_id:72468 Burkholderia multivorans 
prokMSA_id:74106 Burkholderia cepacia genomovar III 
prokMSA_id:74760 WD206 clone WD206
prokMSA_id:77289 Burkholderia tropicalis strain MOc-725 complete 
prokMSA_id:77461 Burkholderia tropicalis strain MTo-672 complete 
prokMSA_id:77530 Burkholderia tropicalis strain MTo-293 complete 
prokMSA_id:77828 Burkholderia sp. VE22 
prokMSA_id:78142 Burkholderia pyrrocinia strain R13058
prokMSA_id:80462 Burkholderia unamae strain MTl-641 
prokMSA_id:82944 Burkholderia sp. MN 101.b strain MN 101.b
prokMSA_id:84996 Burkholderia multivorans 
prokMSA_id:89744 Burkholderia pyrrocinia HI2715 AY321587
prokMSA_id:90244 Burkholderia gladioli AY297695
prokMSA_id:91019 Burkholderia cepacia strain 1996031073 AY268144
prokMSA_id:91039 Burkholderia gladioli strain 1993027208 AY268167
prokMSA_id:91062 Burkholderia pseudomallei strain 2002721619 complete AY30581
prokMSA_id:91069 Burkholderia pseudomallei strain 2002721626 complete AY30580
prokMSA_id:91105 Burkholderia cepacia strain 1995019362 AY268149
prokMSA_id:91267 Burkholderia cepacia strain 1997030236 AY268150
prokMSA_id:91294 Burkholderia pseudomallei strain 2002721618 complete AY30581
prokMSA_id:91313 Burkholderia cepacia strain 2001008925 AY268152
prokMSA_id:91324 Burkholderia cepacia strain 1996031071 AY268147
prokMSA_id:91383 Burkholderia pseudomallei strain 2001029240 complete AY30577
prokMSA_id:91413 Burkholderia cepacia strain 1997019658 AY268140
prokMSA_id:91511 Burkholderia cepacia strain 1995030549 AY268146
prokMSA_id:91555 Burkholderia mallei strain 2002734303 complete AY305742
prokMSA_id:91595 Burkholderia gladioli strain 2002721590 AY268163
prokMSA_id:91633 Burkholderia cepacia strain 1995035407 AY268148
prokMSA_id:91654 Burkholderia cepacia strain 1996034502 AY268141
prokMSA_id:91737 Burkholderia pseudomallei strain 2000032027 complete AY30576
prokMSA_id:91750 Burkholderia cepacia strain 1996031072 AY268145
prokMSA_id:91794 Burkholderia cepacia strain 1997024024 AY268143
prokMSA_id:91849 Burkholderia cepacia strain 2002721599 AY268151
prokMSA_id:91916 Burkholderia gladioli strain 1995009253 AY268165
prokMSA_id:91924 Burkholderia gladioli strain 1996012911 AY268166
prokMSA_id:91991 Burkholderia gladioli strain 2002721589 AY268164
prokMSA_id:92151 Burkholderia sp. 45250588-5 AY353696
2.28.2.10.6.8118 OTU 2 seqs
prokMSA_id:7244 Burkholderia gladioli EY 3258
prokMSA_id:32920 Burkholderia gladioli Genomic 1343 nt 2 segments
2.28.2.10.6.8132 OTU 1 seq
prokMSA_id:7260 Thiomonas cuprina str. H5 DSM 5495
2.28.2.11 OXALOBACTER_GROUP 147 seqs
2.28.2.11.7663 OTU 1 seq
prokMSA_id:20952 Duganella clone MT18 
2.28.2.11.7743 OTU 1 seq
prokMSA_id:74451 Herbaspirillum sp. NAH4 
2.28.2.11.7793 OTU 1 seq
prokMSA_id:16620 Zoogloea sp. clone F8 
2.28.2.11.7799 OTU 1 seq
prokMSA_id:43089 beta 1275a 
2.28.2.11.7804 OTU 1 seq
prokMSA_id:27849 #0319-7F2 
2.28.2.11.7825 OTU 1 seq
prokMSA_id:75756 beta clone JG37-AG-125
2.28.2.11.7826 OTU 1 seq
prokMSA_id:43158 Beta A0823 
2.28.2.11.7843 OTU 5 seqs
prokMSA_id:7352 unnamed organism
prokMSA_id:74938 Massilia timonae strain 97A4424 
prokMSA_id:75063 Massilia timonae strain 99A9205 
prokMSA_id:75326 Massilia timonae strain 85A2206 
prokMSA_id:78767 Massilia sp. 72 
2.28.2.11.7845 OTU 1 seq
prokMSA_id:19906 Syncytium endosymbiont of Diaphorina citri 
2.28.2.11.7861 OTU 1 seq
prokMSA_id:27357 oxSCC-6 
2.28.2.11.7866 OTU 2 seqs
prokMSA_id:7343 Pseudomonas lemoignei
prokMSA_id:7344 ATCC 17989
2.28.2.11.7878 OTU 1 seq
prokMSA_id:83836 clone 29 
2.28.2.11.7883 OTU 1 seq
prokMSA_id:7326 clone env_25
2.28.2.11.7900 OTU 1 seq
prokMSA_id:70208 Banisveld landfill BVC71 
2.28.2.11.7913 OTU 1 seq
prokMSA_id:7335 Duganella zoogloeoides IAM 12670
2.28.2.11.7921 OTU 74 seqs
prokMSA_id:7288 str. MY14
prokMSA_id:7289 str. D-6
prokMSA_id:7290 str. D-7
prokMSA_id:7291 str. ND5
prokMSA_id:7295 Herbaspirillum rubrisubalbicans ATCC 19308
prokMSA_id:7316 Telluria mixta ACM 1762
prokMSA_id:7347 Telluria chitinolytica str. 20M ACM 3522
prokMSA_id:7365 Oxalobacter formigenes str. BA4
prokMSA_id:7366 Oxalobacter formigenes str. BLISS
prokMSA_id:7369 Oxalobacter formigenes str. OXCR
prokMSA_id:7371 Oxalobacter formigenes str. OXK
prokMSA_id:18940 Beta Ter6 isolate Ter6
prokMSA_id:19827 Beta Wuba26 
prokMSA_id:21324 clone RB13C5 AF407411
prokMSA_id:26437 clone LO13.5 AF358019
prokMSA_id:27239 rape rhizosphere wr0040 AJ295498
prokMSA_id:32705 Beta Ter331 isolate Ter331
prokMSA_id:34084 sp. isolate K1
prokMSA_id:35397 hydrocarbon seep BPC087 AF154097
prokMSA_id:37561 mRNA clone sipK84
prokMSA_id:43640 Herbaspirillum sp. B65 AB049103
prokMSA_id:50320 clone p-2518-18B5 
prokMSA_id:57762 Collimonas fungivorans strain CTE227 AJ496445
prokMSA_id:57763 Collimonas fungivorans strain CTE118
prokMSA_id:58574 Herbaspirillum sp. PIV-34-1 strain PIV-34-1
prokMSA_id:59892 beta clone ccspost237 AY133107
prokMSA_id:59896 beta clone ccspost2128 AY133100
prokMSA_id:60344 clone Glu14 AF534196
prokMSA_id:61829 beta clone CLi51 AF529336
prokMSA_id:62403 beta clone FTL254 
prokMSA_id:62413 beta clone FTL217 
prokMSA_id:62422 beta clone FTL205 AF529095
prokMSA_id:63192 Oxalobacter sp. p8E 
prokMSA_id:68775 Glacial ice CanDirty89 AF479326
prokMSA_id:75668 Herbaspirillum sp. Hg 1 
prokMSA_id:76423 Herbaspirillum lusitanum complete AF543312
prokMSA_id:76810 Massilia cf. timonae strain 96A14209 
prokMSA_id:78721 isolate 5g06 AY177773
prokMSA_id:79075 Phenanthrene-degrading 70-2 
prokMSA_id:79614 clone ARKMP90 
prokMSA_id:79646 clone ARKMP91 AY198109
prokMSA_id:79836 Arctic sea ice ARK10157 AF468345
prokMSA_id:79839 clone ARKMP-27 AF468325
prokMSA_id:79895 clone ARKDMS-28 AF468241
prokMSA_id:79901 Arctic sea ice ARK10172 
prokMSA_id:79952 clone ARKMP-113 AF468331
prokMSA_id:80242 Arctic sea ice ARK10299 AF468350
prokMSA_id:80296 clone ARKMP92 AY198108
prokMSA_id:80338 clone ARKMP-56 AF468329
prokMSA_id:80342 Arctic sea ice ARK10162 AF468346
prokMSA_id:80494 Herbaspirillum seropedicae strain Z78 AY191275
prokMSA_id:80693 clone ARKMP-20 AF468324
prokMSA_id:80776 clone ARKMP-22 
prokMSA_id:80818 clone ARKMP80 AY198106
prokMSA_id:80915 clone ARKICE-119 AF468301
prokMSA_id:80971 clone ARKMP10 AY198105
prokMSA_id:80972 clone ARKMP-110 AF468330
prokMSA_id:81248 Arctic sea ice ARK10167 isolate ARK10167 AY227004
prokMSA_id:81252 clone ZZ15C3 AY214204
prokMSA_id:81596 clone KD7-1 
prokMSA_id:81640 clone KD6-99 AY218774
prokMSA_id:82198 clone ZZ15C16 AY214208
prokMSA_id:82371 clone KD5-6 
prokMSA_id:90518 Glacier FJI10 AY315180
prokMSA_id:91268 G9 AY345390
prokMSA_id:91343 H12 AY345556
prokMSA_id:91642 H9 AY345545
prokMSA_id:93350 Herbaspirillum sp. Chnp3-5 AY367037
prokMSA_id:93490 Ultramicrobacterium str. Um1 AY367012
prokMSA_id:94041 beta- clone Gitt-GS-155 AJ582196
prokMSA_id:94149 beta- clone Gitt-GS-102 AJ582190
prokMSA_id:96354 beta clone SW20 AJ575693
prokMSA_id:96491 beta clone SW38 AJ575692
prokMSA_id:98773 beta clone SW15 AJ575691
2.28.2.11.7936 OTU 2 seqs
prokMSA_id:39233 isolate HRV10
prokMSA_id:44013 isolate HRV40
2.28.2.11.7954 OTU 4 seqs
prokMSA_id:25535 earthworm cast clone C016 AY037674
prokMSA_id:83752 beta clone SL2-1-F1 
prokMSA_id:83755 beta clone SL2-1-F9 AY214615
prokMSA_id:84959 beta clone SL2-1-D10 
2.28.2.11.7968 OTU 1 seq
prokMSA_id:7364 Oxalobacter formigenes str. OxB ATCC 35274
2.28.2.11.7997 OTU 1 seq
prokMSA_id:65795 soil clone S0173 
2.28.2.11.8013 OTU 2 seqs
prokMSA_id:23044 Beta A1020 
prokMSA_id:36180 Beta Wuba70 
2.28.2.11.8034 OTU 8 seqs
prokMSA_id:7282 str. PUS10.40
prokMSA_id:7333 str. HTC018
prokMSA_id:7334 str. HTB091
prokMSA_id:22305 J.agaricidamnosum 
prokMSA_id:83280 Janthinobacterium lividum 
prokMSA_id:83537 Antarctic R-7687 strain R-7687
prokMSA_id:84410 Antarctic R-7614 strain R-7614
prokMSA_id:91072 clone K2-30-5 AY344370
2.28.2.11.8032 OTU 11 seqs
prokMSA_id:7327 Pseudomonas mephitica ATCC 33665. AB021388
prokMSA_id:17456 Vestimentiferan symbiont TW-5 AB042420
prokMSA_id:22796 Beta Wuba73 
prokMSA_id:26824 Agricultural soil isolate SI-5 AJ252575
prokMSA_id:55297 beta clone CLi13 
prokMSA_id:61808 beta clone CLs99 
prokMSA_id:61811 beta clone CLs79 
prokMSA_id:66301 Aquaspirillum arcticum 
prokMSA_id:75470 beta clone Gitt-KF-125
prokMSA_id:85781 Oxalobacteraceae MWH73 
prokMSA_id:97163 beta clone SW57 AJ575697
2.28.2.11.8058 OTU 19 seqs
prokMSA_id:7283 Herbaspirillum seropedicae str. Z67 DSM 6445
prokMSA_id:7300 Herbaspirillum frisingense str. 75B
prokMSA_id:7301 Herbaspirillum frisingense str. GSF30
prokMSA_id:7302 Herbaspirillum frisingense str. Mb11
prokMSA_id:7306 Herbaspirillum sp. BA10 
prokMSA_id:7308 Herbaspirillum sp. BA12 
prokMSA_id:7309 Herbaspirillum sp. BA14 
prokMSA_id:7310 Herbaspirillum sp. BA15 
prokMSA_id:7313 Herbaspirillum seropedicae strain BA153 
prokMSA_id:7314 Herbaspirillum sp. BA161 
prokMSA_id:16576 Herbaspirillum sp. B501 
prokMSA_id:29908 Nitrogen-fixing COL 
prokMSA_id:30348 Herbaspirillum seropedicae strain X8 
prokMSA_id:47876 Pseudomonas huttiensis 
prokMSA_id:63611 Herbaspirillum frisingense 
prokMSA_id:63615 Pseudomonas huttiensis 
prokMSA_id:69647 Herbaspirillum chlorophenolicum 
prokMSA_id:80103 Herbaspirillum seropedicae strain M2 
prokMSA_id:80182 Herbaspirillum seropedicae strain Z152 
2.28.2.11.8124 OTU 1 seq
prokMSA_id:44186 Agricultural soil clone SC-I-14 
2.28.2.11.8141 OTU 2 seqs
prokMSA_id:43330 rape rhizosphere wr0025 
prokMSA_id:49894 rape rhizosphere wr0070 
2.28.2.11.8158 OTU 2 seqs
prokMSA_id:7345 str. Mena 23/3-3c DSM 6920
prokMSA_id:32294 beta 
2.28.2.12 PNB.NECESSARIUS_GROUP 44 seqs
2.28.2.12.7661 OTU 24 seqs
prokMSA_id:7373 Polynucleobacter necessarius
prokMSA_id:7374 clone ACK-L5
prokMSA_id:7376 clone ACK-C4
prokMSA_id:16472 FukuN33 
prokMSA_id:18436 beta clone CRE-FL14 AF141443
prokMSA_id:22870 FukuS36 AJ290074
prokMSA_id:24264 FukuS183 AJ290052
prokMSA_id:25062 FukuS99 AJ290020
prokMSA_id:41436 beta clone CRE-FL79 AF141492
prokMSA_id:44315 beta clone 06 
prokMSA_id:48589 FukuS21 AJ290076
prokMSA_id:51668 beta clone CRE-FL26 AF141453
prokMSA_id:52483 FukuN60 AJ290077
prokMSA_id:70009 beta clone PRD01a006B 
prokMSA_id:72324 FukuS35 
prokMSA_id:82748 Beta MWH-MoK7 
prokMSA_id:83428 Beta MWH-MoIso1 AJ550671
prokMSA_id:83449 Beta MWH-MoK4 
prokMSA_id:84229 Beta MWH-HuK1 
prokMSA_id:84339 Beta MWH-JaK3 
prokMSA_id:84619 Beta MWH-T2W17 
prokMSA_id:85167 Beta MWH-T1W11 AJ550670
prokMSA_id:86341 beta clone TLM03/TLMdgge33 
prokMSA_id:86483 Beta MWH-HuW1 AJ550666
2.28.2.12.7677 OTU 1 seq
prokMSA_id:7375 clone ACK-L6
2.28.2.12.7678 OTU 1 seq
prokMSA_id:7378 str. LD17
2.28.2.12.7859 OTU 17 seqs
prokMSA_id:82497 Beta MWH-T2W3 
prokMSA_id:82561 Beta MWH-MoIso2 
prokMSA_id:83527 Beta MWH-CaK1 
prokMSA_id:83765 Beta MWH-JaW7 
prokMSA_id:83856 Beta MWH-T1W13 
prokMSA_id:84154 Beta MWH-VicM1 
prokMSA_id:84500 Beta MWH-MoNR2 
prokMSA_id:84562 Beta MWH-TaW3 AJ550661
prokMSA_id:84831 Beta MWH-JaW21 
prokMSA_id:85207 Beta MWH-T1W2 
prokMSA_id:85249 Beta MWH-MoNR1 
prokMSA_id:85445 Beta MWH-BeK4 
prokMSA_id:85580 Beta MWH-CaK5 
prokMSA_id:85777 Beta MWH-T2W13 
prokMSA_id:85828 Beta MWH-MoK3 
prokMSA_id:86040 Beta MWH-MoK1 
prokMSA_id:86152 Beta MWH-JaW9 
2.28.2.12.8163 OTU 1 seq
prokMSA_id:23357 beta clone 27 
2.28.2.13 RAL.EUTROPHA_GROUP 80 seqs
2.28.2.13.7755 OTU 1 seq
prokMSA_id:33253 Ralstonia sp. NAH8 
2.28.2.13.7767 OTU 2 seqs
prokMSA_id:81590 clone SB2 
prokMSA_id:82219 clone SB1 
2.28.2.13.7776 OTU 1 seq
prokMSA_id:82952 soil clone Tc131-42 
2.28.2.13.7798 OTU 1 seq
prokMSA_id:76540 beta clone S36.51SM 
2.28.2.13.7823 OTU 7 seqs
prokMSA_id:7398 Ralstonia sp. str. BKME-6
prokMSA_id:7402 Ralstonia MBIC3902 str. MBIC3902
prokMSA_id:21182 Ralstonia sp. HAB-02 
prokMSA_id:50357 Ralstonia sp. KN1 
prokMSA_id:50666 Ralstonia basilensis 
prokMSA_id:70450 Ralstonia basilensis strain ER121 
prokMSA_id:73500 Ralstonia basilensis strain DSM 11853 
2.28.2.13.7993 OTU 4 seqs
prokMSA_id:27267 soil clone 1326-2 AF423222
prokMSA_id:82483 soil clone Tc119-F01 
prokMSA_id:85125 soil clone Tc133-98 
prokMSA_id:85756 soil clone Tc122-E07 AY242701
2.28.2.13.8015 OTU 1 seq
prokMSA_id:63266 clone FW119 
2.28.2.13.8110 OTU 8 seqs
prokMSA_id:7384 str. TM24
prokMSA_id:7385 str. JHH 1448
prokMSA_id:7392 Ralstonia paucula LMG 3413
prokMSA_id:7401 Ralstonia FRA01 str. FRA01
prokMSA_id:22192 Ralstonia sp. S23 
prokMSA_id:62980 Ralstonia sp. clone T5-13 rrn 
prokMSA_id:85415 Ralstonia paucula 
prokMSA_id:86697 Ralstonia sp. 50 
2.28.2.13.8128 OTU 55 seqs
prokMSA_id:7380 Ralstonia eutropha str. 335 R.Y. Stanier ATCC 17697
prokMSA_id:7381 str. TFD43
prokMSA_id:7382 Ralstonia eutropha str. DS185
prokMSA_id:7383 Ralstonia sp. str. MBIC3838
prokMSA_id:7386 Ralstonia eutropha DSM 2839
prokMSA_id:7387 Ralstonia sp. str. CT14
prokMSA_id:7388 Cupriavidus necator ATCC 43291
prokMSA_id:7389 Ralstonia eutropha str. KT1
prokMSA_id:7391 Ralstonia eutropha str. CH34
prokMSA_id:7397 Ralstonia TFD41 str. TFD41
prokMSA_id:7399 Ralstonia sp. str. CT12
prokMSA_id:7400 Ralstonia eutropha str. JS705
prokMSA_id:17535 Ralstonia sp. JMP134 complete AF139729
prokMSA_id:20648 Ralstonia taiwanensis strain LMG 19424 AF300324
prokMSA_id:20728 Ralstonia sp. PHS1 AF239160
prokMSA_id:22497 Ralstonia sp. HAB-01 AB051680
prokMSA_id:24387 Ralstonia sp. HAB-08 
prokMSA_id:25026 Burkholderia sp. oral strain C37KA 
prokMSA_id:27222 Ralstonia sp. 1249 complete 
prokMSA_id:27700 Ralstonia sp. BA-0323 
prokMSA_id:29604 Ralstonia sp. P-10 
prokMSA_id:34687 Ralstonia oxalatica complete AF155567
prokMSA_id:40792 Ralstonia sp. U2 
prokMSA_id:41961 Ralstonia sp. LD35 
prokMSA_id:47468 Ralstonia taiwanensis strain LMG 19425 
prokMSA_id:52220 Ralstonia sp. HAB-18 
prokMSA_id:52615 and method detecting KB1 strain by using in the 
prokMSA_id:53615 Ralstonia campinensis strain WS2 AF312020
prokMSA_id:56268 Ralstonia sp. AU3369 
prokMSA_id:56519 Ralstonia sp. AU0626 
prokMSA_id:56669 Ralstonia sp. AU626 
prokMSA_id:58406 Ralstonia eutropha 
prokMSA_id:62981 Ralstonia sp. clone T5-19 rrn 
prokMSA_id:66050 Ralstonia sp. AU1618 
prokMSA_id:66058 Ralstonia sp. AU3801 
prokMSA_id:66059 Ralstonia sp. AU3313 
prokMSA_id:67342 Ralstonia sp. BPC3 
prokMSA_id:71428 Ralstonia campinensis strain LMG 20579 
prokMSA_id:72179 Ralstonia campinensis strain LMG 20568 AY040349
prokMSA_id:72788 Ralstonia campinensis strain LMG 20576 AY040355
prokMSA_id:73191 Ralstonia sp. MN 43 isolate MN 43
prokMSA_id:83846 Ralstonia basilensis strain:KF708 AB109778
prokMSA_id:85683 clone CCMC0 AY221074
prokMSA_id:88067 Ralstonia taiwanensis strain MS1 AY303977
prokMSA_id:92814 Ralstonia sp. 80 AY238507
prokMSA_id:95536 Ralstonia sp. 1245 AB121221
prokMSA_id:96429 Ralstonia sp. 1244a complete AB054960
prokMSA_id:96723 Ralstonia sp. 1266 AB121227
prokMSA_id:96923 Ralstonia sp. 1265a AB121226
prokMSA_id:97047 Ralstonia sp. 1278a AB121228
prokMSA_id:97064 Ralstonia sp. 1259 AB121225
prokMSA_id:97344 Ralstonia sp. 1243 AB121220
prokMSA_id:97465 Ralstonia sp. 1247 AB121223
prokMSA_id:98039 Ralstonia sp. 1250 AB121224
prokMSA_id:98665 Ralstonia sp. 1246a AB121222
2.28.2.14 RAL.SOLANACEARUM_GROUP 84 seqs
2.28.2.14.1 PS.SYZYGII_SUBGROUP 80 seqs
2.28.2.14.1.7761 OTU 80 seqs
prokMSA_id:7404 Ralstonia solanacearum str. R780. U28232
prokMSA_id:7405 Ralstonia solanacearum str. R142
prokMSA_id:7406 Pseudomonas syzygii str. R058
prokMSA_id:7407 Pseudomonas syzygii str. R001
prokMSA_id:7408 Ralstonia Pseudomonas syzygii ATCC 49543
prokMSA_id:7410 str. R223
prokMSA_id:7411 str. R233
prokMSA_id:7412 str. R506
prokMSA_id:7415 Ralstonia pickettii str. PKO1
prokMSA_id:7417 Ralstonia pickettii str. K 550 ATCC 27512. X67042
prokMSA_id:7422 Ralstonia solanacearum ACH 0171
prokMSA_id:7423 Ralstonia solanacearum ACH 092
prokMSA_id:7424 Ralstonia solanacearum ACH 0732
prokMSA_id:7427 Ralstonia solanacearum str. R288. U27984
prokMSA_id:7428 Ralstonia solanacearum ACH 092
prokMSA_id:7429 Ralstonia solanacearum ACH 0171. U27986
prokMSA_id:7430 Ralstonia solanacearum str. R791. U27987
prokMSA_id:7431 Ralstonia solanacearum CIP 365
prokMSA_id:7434 Ralstonia solanacearum str. PDDCC1727; K60 ATCC 1696
prokMSA_id:7435 Ralstonia solanacearum str. Br150. U28225
prokMSA_id:7436 Ralstonia solanacearum str. R207
prokMSA_id:7437 Ralstonia solanacearum str. R639. U28231
prokMSA_id:7438 Ralstonia solanacearum CIP 210
prokMSA_id:7439 Ralstonia solanacearum CIP 10. U28227
prokMSA_id:7441 Ralstonia solanacearum ATCC 11696 . S55002
prokMSA_id:7442 Ralstonia solanacearum str. R633. U28230
prokMSA_id:7443 Ralstonia solanacearum str. R634. U28229
prokMSA_id:7444 Ralstonia solanacearum CIP 238. U28226
prokMSA_id:7445 Ralstonia solanacearum ACH 0158
prokMSA_id:7448 Ralstonia solanacearum ACH 0158
prokMSA_id:7449 Ralstonia solanacearum ATCC 11696
prokMSA_id:7450 Ralstonia solanacearum str. R483. U28228
prokMSA_id:18760 AT425_EubE3 
prokMSA_id:19239 Ralstonia solanacearum strain CFBP1036 
prokMSA_id:23650 Ralstonia thomasii strain RAL4 MC5
prokMSA_id:24261 Ralstonia detusculanense AF280433
prokMSA_id:26889 Pseudomonas sp. BUV1 AF396930
prokMSA_id:27013 Ralstonia solanacearum strain MAFF211266 AF207897
prokMSA_id:29028 Ralstonia thomasii strain LBV407 UCL310 AJ270257
prokMSA_id:31873 Ralstonia pickettii strain RAL01 LMG 7160
prokMSA_id:33270 Ralstonia solanacearum isolate:MAFF 301520 AB024607
prokMSA_id:37841 Ralstonia thomasii strain RAL13 LBV371 AJ270256
prokMSA_id:38402 Ralstonia solanacearum isolate:MAFF 211271 AB024609
prokMSA_id:39252 Ralstonia solanacearum isolate:MAFF 301527 AB024605
prokMSA_id:39540 Ralstonia sp. APF11 AB045276
prokMSA_id:40253 Ralstonia solanacearum isolate:MAFF 301559 AB024608
prokMSA_id:41733 Burkholderia solanacearum ATCC 10696 Genomic 1345 nt 2 segme
prokMSA_id:42127 Ralstonia solanacearum strain NCPPB342 AF207896
prokMSA_id:42763 Ralstonia solanacearum strain CFBP734 AF207895
prokMSA_id:43651 Ralstonia solanacearum isolate:MAFF 301522 AB024606
prokMSA_id:44709 Pseudomonas sp. MF254A 
prokMSA_id:44713 Ralstonia solanacearum strain NCPPB1018 AF207893
prokMSA_id:47343 Ralstonia solanacearum strain CFBP712 
prokMSA_id:48001 Ralstonia solanacearum strain CFBP2146 AF207894
prokMSA_id:48140 Ralstonia thomasii strain LMG6866
prokMSA_id:50403 Ralstonia solanacearum megaplasmid complete NC_003296
prokMSA_id:50898 Ralstonia solanacearum isolate:MAFF 211266 AB024604
prokMSA_id:57520 Blood disease BananaE 
prokMSA_id:57720 Ralstonia sp. CCUG 46389 strain CCUG 46389
prokMSA_id:58388 Ralstonia solanacearum GMI1000 chromosome complete ; segment
prokMSA_id:58389 Ralstonia solanacearum GMI1000 megaplasmid complete ; segmen
prokMSA_id:58390 Ralstonia solanacearum GMI1000 chromosome complete ; segment
prokMSA_id:58391 Ralstonia solanacearum GMI1000 chromosome complete ; segment
prokMSA_id:61100 Ralstonia solanacearum complete genome NC_003295
prokMSA_id:63606 Ralstonia sp. AU378 
prokMSA_id:64267 
prokMSA_id:67749 Ralstonia sp. AU2944 AF488779
prokMSA_id:72352 Ralstonia sp. AV5BG 
prokMSA_id:72714 Burkholderia sp. oral clone AK168 
prokMSA_id:78927 Ralstonia sp. 97 
prokMSA_id:81066 Ralstonia solanacearum 
prokMSA_id:82456 Ralstonia sp. Q3-8/14 
prokMSA_id:88218 Ralstonia pickettii strain 2000032023 AY268176
prokMSA_id:88249 Ralstonia pickettii strain 2000030791 AY268179
prokMSA_id:89041 clone O-F-8 AF443572
prokMSA_id:89721 Ralstonia pickettii strain 2002721591 AY268178
prokMSA_id:89827 Ralstonia pickettii strain 2000030635 AY268180
prokMSA_id:90376 Ralstonia pickettii strain 2002721592 AY268177
prokMSA_id:90720 Ralstonia sp. 1999043680 AY268181
prokMSA_id:91538 K2-21 AY345430
2.28.2.14.3 RAL.SOLAN4_SUBGROUP 4 seqs
2.28.2.14.3.7778 OTU 1 seq
prokMSA_id:79758 Ralstonia insidiosa strain CCUG 46388
2.28.2.14.3.7832 OTU 1 seq
prokMSA_id:16927 Ralstonia CtaxAus-5 
2.28.2.14.3.7922 OTU 2 seqs
prokMSA_id:7432 Ralstonia solanacearum str. H1
prokMSA_id:70664 Ralstonia solanacearum 
2.28.3 GAMMA_SUBDIVISION 4359 seqs
2.28.3.1 HALORHODOSPIRA_GROUP 5 seqs
2.28.3.1.9371 OTU 1 seq
prokMSA_id:7452 Halorhodospira halochloris str. BN 9851; 51/12
2.28.3.1.9373 OTU 1 seq
prokMSA_id:7453 clone QSSC9L-5
2.28.3.1.9375 OTU 1 seq
prokMSA_id:7457 Halorhodospira halophila str. BN 9624; 51/1
2.28.3.1.9450 OTU 2 seqs
prokMSA_id:62637 Halorhodospira neutrophila strain SG3301
prokMSA_id:62638 Halorhodospira neutrophila strain SG3304
2.28.3.2 ARHODOMONAS_AND_NITROCOCCUS_GROUP 18 seqs
2.28.3.2.8218 OTU 1 seq
prokMSA_id:52546 thermal soil clone YNPFFP50 
2.28.3.2.8306 OTU 1 seq
prokMSA_id:62495 Ectothiorhodospiraceae clone LA7-B9 
2.28.3.2.8792 OTU 1 seq
prokMSA_id:23032 gamma clone MPD-09 
2.28.3.2.8889 OTU 5 seqs
prokMSA_id:55809 gamma clone ML310M-42 
prokMSA_id:56490 gamma clone ML110J-20 
prokMSA_id:62733 gamma clone ML617.5J-3 
prokMSA_id:63855 gamma clone ML110J-5 
prokMSA_id:79965 gamma clone ML812M-17 
2.28.3.2.8917 OTU 2 seqs
prokMSA_id:49121 gamma MERTZ_2CM_54 
prokMSA_id:54801 gamma MERTZ_2CM_24 AF424060
2.28.3.2.8933 OTU 1 seq
prokMSA_id:41406 gamma MERTZ_21CM_15 
2.28.3.2.9378 OTU 1 seq
prokMSA_id:7459 clone EKHO-2
2.28.3.2.9429 OTU 1 seq
prokMSA_id:7461 Alkalispirillum mobilis
2.28.3.2.9427 OTU 1 seq
prokMSA_id:7460 Nitrococcus mobilis ATCC 25380
2.28.3.2.9598 OTU 4 seqs
prokMSA_id:62740 gamma clone ML602J-47 
prokMSA_id:63857 gamma clone ML110J-38 
prokMSA_id:79794 gamma clone ML812M-2 
prokMSA_id:80413 gamma clone ML615J-15 
2.28.3.3 ECTOTHIORHODOSPIRA_GROUP 31 seqs
2.28.3.3.8258 OTU 4 seqs
prokMSA_id:7464 Ectothiorhodospira haloalkaliphila str. BN 9902; C
prokMSA_id:7465 Ectothiorhodospira 'Bogoria Red' str. Bogoria Red
prokMSA_id:28189 Ectothiorhodospira sp. 'Bogoria Red' strain RB1 
prokMSA_id:32582 Ectothiorhodospira sp. 'Bogoria Red' strain RM1 
2.28.3.3.8671 OTU 6 seqs
prokMSA_id:20571 HOC49 AB054183
prokMSA_id:21103 HOC47 AB054181
prokMSA_id:33232 HOC40 AB054174
prokMSA_id:49286 HOC5 
prokMSA_id:49861 HOC36 
prokMSA_id:52080 HOC38 
2.28.3.3.8747 OTU 1 seq
prokMSA_id:78921 clone JG30-KF-CM35
2.28.3.3.8858 OTU 2 seqs
prokMSA_id:7469 clone BURTON-56
prokMSA_id:21294 gamma MERTZ_0CM_117 
2.28.3.3.8872 OTU 1 seq
prokMSA_id:62739 gamma clone ML623J-18 
2.28.3.3.8984 OTU 1 seq
prokMSA_id:22774 gamma MERTZ_0CM_102 
2.28.3.3.9059 OTU 1 seq
prokMSA_id:58382 clone SBRH10 
2.28.3.3.9206 OTU 1 seq
prokMSA_id:54886 gamma MERTZ_21CM_39 
2.28.3.3.9246 OTU 1 seq
prokMSA_id:83068 clone CCD24 
2.28.3.3.9455 OTU 1 seq
prokMSA_id:7468 Ectothiorhodospira vacuolata str. BN 9512; beta1 DSM 2111
2.28.3.3.9451 OTU 1 seq
prokMSA_id:7467 Ectothiorhodospira shaposhnikovii str. BN 9912; Truper 8115 
2.28.3.3.9480 OTU 1 seq
prokMSA_id:7471 Ectothiorhodospira marina str. BN 9914; Matheron BA 1010 DSM
2.28.3.3.9519 OTU 1 seq
prokMSA_id:71608 Thioalcalovibrio nitratus 
2.28.3.3.9585 OTU 8 seqs
prokMSA_id:21557 HOC3 AB054137
prokMSA_id:30803 HOC28 
prokMSA_id:40999 HOC37 AB054171
prokMSA_id:46213 HOC46 
prokMSA_id:47851 HOC50 
prokMSA_id:50717 HOC31 
prokMSA_id:51009 HOC12 
prokMSA_id:54932 HOC33 
2.28.3.3.9657 OTU 1 seq
prokMSA_id:69845 Thioalcalovibrio versutus 
2.28.3.4 THIOBACILLUS_GROUP 135 seqs
2.28.3.4.1 THB.FERROOXIDANS_SUBGROUP 45 seqs
2.28.3.4.1.8320 OTU 1 seq
prokMSA_id:58315 clone BA11 
2.28.3.4.1.8495 OTU 1 seq
prokMSA_id:32422 Acidithiobacillus cuprithermicus 
2.28.3.4.1.8552 OTU 24 seqs
prokMSA_id:7484 Thiobacillus ferrooxidans str. N-Fe2
prokMSA_id:7487 str. NFe4
prokMSA_id:7489 clone cOS1
prokMSA_id:7491 Thiobacillus ferrooxidans str. N-Fe4
prokMSA_id:7500 Thiobacillus ferrooxidans str. N-Fe3
prokMSA_id:18606 Acidithiobacillus sp. NO-25 AF376019
prokMSA_id:19600 clone RA13C4 
prokMSA_id:23599 Acidithiobacillus ferrooxidans strain ATCC33020
prokMSA_id:26996 Acidithiobacillus ferrooxidans strain SS6
prokMSA_id:29211 clone RA13C22 
prokMSA_id:29934 Acidithiobacillus sp. NO-8 
prokMSA_id:31580 Acidithiobacillus sp. NO-37 AF376020
prokMSA_id:38200 Acidithiobacillus sp. SSP 
prokMSA_id:38412 clone RB13C4 
prokMSA_id:43942 clone RA13C21 
prokMSA_id:45494 Acidithiobacillus sp. KSC1 
prokMSA_id:53234 Acidithiobacillus ferrooxidans 23S and internal transcribed 
prokMSA_id:53334 Acidithiobacillus ferrooxidans 23S and internal transcribed 
prokMSA_id:67351 Acidithiobacillus ferrooxidans strain ATCC19859 AJ457808
prokMSA_id:67355 Acidithiobacillus ferrooxidans strain CC1
prokMSA_id:67356 Acidithiobacillus ferrooxidans strain BRGM1
prokMSA_id:70237 Acidithiobacillus ferrooxidans strain ATCC23270T
prokMSA_id:79379 Acidithiobacillus ferrooxidans strain ATCC23270 
prokMSA_id:79580 Acidithiobacillus ferrooxidans strain TFI 
2.28.3.4.1.8719 OTU 1 seq
prokMSA_id:60589 clone G73 
2.28.3.4.1.8951 OTU 7 seqs
prokMSA_id:7480 Thiobacillus thiooxidans
prokMSA_id:7494 Thiobacillus caldus str. KU DSM 8584
prokMSA_id:7498 TC 1
prokMSA_id:7499 str. GO-1
prokMSA_id:48511 Acidithiobacillus caldus P5-10 
prokMSA_id:48523 Enrichment culture clone ECC44 AF226672
prokMSA_id:65356 Acidithiobacillus caldus 
2.28.3.4.1.9204 OTU 2 seqs
prokMSA_id:7495 Thiobacillus sp. str. C
prokMSA_id:66601 Thermithiobacillus tepidarius strain DSM 3134
2.28.3.4.1.9224 OTU 5 seqs
prokMSA_id:7482 str. NFe4
prokMSA_id:7483 Thiobacillus sp
prokMSA_id:7485 Thiobacillus thiooxidans str. B-53
prokMSA_id:22453 Acidithiobacillus sp. SH 
prokMSA_id:56606 Acidithiobacillus albertensis strain DSM 14366
2.28.3.4.1.9498 OTU 2 seqs
prokMSA_id:79344 clone csbio160361 
prokMSA_id:79587 clone csbio160382 
2.28.3.4.1.9497 OTU 1 seq
prokMSA_id:53544 Acidithiobacillus ferrooxidans strain ATCC 19859 ; -23S inte
2.28.3.4.1.9578 OTU 1 seq
prokMSA_id:7497 VC2.1 Bac43 complete 
2.28.3.4.2 NSC.OCEANI_SUBGROUP 6 seqs
2.28.3.4.2.8407 OTU 1 seq
prokMSA_id:77717 Nitrosococcus halophilus isolate Nc4
2.28.3.4.2.8718 OTU 1 seq
prokMSA_id:51207 Nitrosococcus halophilus Nc4 
2.28.3.4.2.9279 OTU 1 seq
prokMSA_id:44340 gamma clone R202 
2.28.3.4.2.9568 OTU 1 seq
prokMSA_id:63326 clone RCP2-96 
2.28.3.4.2.9571 OTU 2 seqs
prokMSA_id:7502 Nitrosococcus oceani str. C-107
prokMSA_id:78358 Nitrosococcus oceani isolate Nc10
2.28.3.4.3 BEG.ALBA_SUBGROUP 23 seqs
2.28.3.4.3.8321 OTU 2 seqs
prokMSA_id:60451 Beggiatoa sp. clone Limfjorden L9 
prokMSA_id:73639 Beggiatoa sp. clone Dangast A9 
2.28.3.4.3.8477 OTU 3 seqs
prokMSA_id:60452 Beggiatoa sp. clone Limfjorden L8 
prokMSA_id:60454 Beggiatoa sp. clone Limfjorden L22 
prokMSA_id:60456 Beggiatoa sp. clone Limfjorden D4 
2.28.3.4.3.8559 OTU 4 seqs
prokMSA_id:7509 Thioploca ingrica. L40998
prokMSA_id:62226 Thioploca sp. 'Lake Constance' 
prokMSA_id:67230 Thioploca sp. 'Lake Biwa' 
prokMSA_id:70714 Thioploca ingrica L40998
2.28.3.4.3.8677 OTU 1 seq
prokMSA_id:7510 Beggiatoa 'Monterey Canyon'
2.28.3.4.3.8678 OTU 1 seq
prokMSA_id:7511 Beggiatoa 'Bay of Concepcion' str. Bay of Concepcion
2.28.3.4.3.8741 OTU 1 seq
prokMSA_id:60455 Beggiatoa sp. clone Limfjorden L10 
2.28.3.4.3.8752 OTU 1 seq
prokMSA_id:81307 Beggiatoa sp. MS-81-1c 
2.28.3.4.3.9015 OTU 1 seq
prokMSA_id:81779 Beggiatoa alba 
2.28.3.4.3.9013 OTU 1 seq
prokMSA_id:7506 str. TM20
2.28.3.4.3.9321 OTU 1 seq
prokMSA_id:84651 Beggiatoa sp. clone:Tokyo Bay D
2.28.3.4.3.9374 OTU 6 seqs
prokMSA_id:20938 gamma YNPRH65B AF465652
prokMSA_id:25123 DGGE band YNPRH-B13 AF465671
prokMSA_id:58104 Ellin339 AF498721
prokMSA_id:63327 clone RCP1-57 AF523889
prokMSA_id:64005 clone:CF49 AB087369
prokMSA_id:73838 Ellin307 
2.28.3.4.3.9510 OTU 1 seq
prokMSA_id:70923 Thiomargarita namibiensis 
2.28.3.4.4 THC.GELATINOSA_ASSEMBLAGE 13 seqs
2.28.3.4.4.8583 OTU 3 seqs
prokMSA_id:7520 Chromatium okenii DSM 169
prokMSA_id:7521 Chromatium okenii
prokMSA_id:7522 str. clone 359
2.28.3.4.4.8784 OTU 2 seqs
prokMSA_id:7516 Thiocystis gelatinosa str. 2611 DSMZ 215
prokMSA_id:7517 Thiocystis gelatinosa
2.28.3.4.4.9048 OTU 1 seq
prokMSA_id:78198 Allochromatium sp. AT2202 
2.28.3.4.4.9078 OTU 1 seq
prokMSA_id:7519 Thiocystis minor DSM 178
2.28.3.4.4.9077 OTU 1 seq
prokMSA_id:7518 Thiocystis violascens DSM 198
2.28.3.4.4.9138 OTU 1 seq
prokMSA_id:7523 Thiocystis violacea str. 2711 N. Pfennig DSM 207
2.28.3.4.4.9164 OTU 1 seq
prokMSA_id:7525 Marichromatium PENDANT-18
2.28.3.4.4.9282 OTU 1 seq
prokMSA_id:57798 clone SBRC_30 
2.28.3.4.4.9610 OTU 2 seqs
prokMSA_id:20680 Chromatium sp. RW 
prokMSA_id:22729 Chromatium sp. NM2 
2.28.3.4.5 TCP.ROSEA_SUBGROUP 4 seqs
2.28.3.4.5.8546 OTU 1 seq
prokMSA_id:74025 Thiocapsa sp. BM-5 
2.28.3.4.5.8736 OTU 1 seq
prokMSA_id:7531 Thiocapsa roseopersicina str. ML2
2.28.3.4.5.9170 OTU 1 seq
prokMSA_id:7526 Thiorhodococcus minor str. HA2P ATCC 700259
2.28.3.4.5.9173 OTU 1 seq
prokMSA_id:7529 str. BD1-1
2.28.3.4.6 MCH.PURPURATUM_SUBGROUP 44 seqs
2.28.3.4.6.8273 OTU 1 seq
prokMSA_id:71945 Thiocapsa sp. strain 8320
2.28.3.4.6.8342 OTU 1 seq
prokMSA_id:71248 Thiocapsa pfennigii 
2.28.3.4.6.8346 OTU 1 seq
prokMSA_id:7539 Rhabdochromatium marinum str. 8315-5 DSM 5261
2.28.3.4.6.8376 OTU 2 seqs
prokMSA_id:62475 Chromatiaceae clone LA7-B30N 
prokMSA_id:62498 Chromatiaceae clone LA4-B63N 
2.28.3.4.6.8400 OTU 3 seqs
prokMSA_id:7544 clone 335
prokMSA_id:7545 clone 371. AJ006061
prokMSA_id:73594 Chromatiaceae Cad16 AJ511274
2.28.3.4.6.8399 OTU 1 seq
prokMSA_id:7542 clone BPC022
2.28.3.4.6.8408 OTU 1 seq
prokMSA_id:7573 Thiorhodovibrio sp
2.28.3.4.6.8412 OTU 1 seq
prokMSA_id:7546 clone Sva0091
2.28.3.4.6.8449 OTU 1 seq
prokMSA_id:7550 endosymbiont of Inanidrilus leukodermatus S-oxidizing
2.28.3.4.6.8451 OTU 1 seq
prokMSA_id:7553 unnamed organism
2.28.3.4.6.8455 OTU 1 seq
prokMSA_id:7554 Halochromatium glycolicum str. BN 3201
2.28.3.4.6.8456 OTU 1 seq
prokMSA_id:7557 Halochromatium salexigens str. 6310 DSM 4395
2.28.3.4.6.8461 OTU 1 seq
prokMSA_id:7559 str. Thd2
2.28.3.4.6.8479 OTU 1 seq
prokMSA_id:31275 gamma MERTZ_2CM_291 
2.28.3.4.6.8494 OTU 1 seq
prokMSA_id:17355 gamma MERTZ_2CM_164 
2.28.3.4.6.8499 OTU 1 seq
prokMSA_id:7568 Marichromatium gracile str. BN 5210 DSM 203
2.28.3.4.6.8527 OTU 1 seq
prokMSA_id:26490 gamma MERTZ_21CM_129 
2.28.3.4.6.8526 OTU 1 seq
prokMSA_id:7572 Amoebobacter purpureus str. ML1
2.28.3.4.6.8525 OTU 1 seq
prokMSA_id:7571 Isochromatium ACE-31
2.28.3.4.6.8548 OTU 1 seq
prokMSA_id:18791 gamma Sva1005 
2.28.3.4.6.8697 OTU 1 seq
prokMSA_id:77961 Thiococcus sp. AT2204 
2.28.3.4.6.8735 OTU 1 seq
prokMSA_id:29624 PHOS-HE54 
2.28.3.4.6.8815 OTU 1 seq
prokMSA_id:7560 clone SRang2.5
2.28.3.4.6.8816 OTU 1 seq
prokMSA_id:7561 str. JTB148
2.28.3.4.6.8875 OTU 1 seq
prokMSA_id:37395 gamma Sva0535 
2.28.3.4.6.8967 OTU 1 seq
prokMSA_id:42824 gamma MERTZ_2CM_204 
2.28.3.4.6.9033 OTU 5 seqs
prokMSA_id:7541 Lamprocystis roseopersicina DSM 229
prokMSA_id:7543 clone 136
prokMSA_id:7564 Amoebobacter purpureus str. ThSchl2 DSM 4197
prokMSA_id:7565 clone 261
prokMSA_id:7566 clone 345. AJ006060
2.28.3.4.6.9054 OTU 1 seq
prokMSA_id:78112 Thiococcus sp. AT2205 
2.28.3.4.6.9097 OTU 1 seq
prokMSA_id:43810 Olavius algarvensis sulfur-oxidizing endosymbiont 
2.28.3.4.6.9217 OTU 1 seq
prokMSA_id:70247 Thiorhodovobrio winogradskyi strain 4910/06511
2.28.3.4.6.9251 OTU 3 seqs
prokMSA_id:7470 Thiorhodovibrio sibirica AJ010297
prokMSA_id:7548 Thiorhodospira sibirica str. A12. AJ006530
prokMSA_id:71426 Thiococcus sp. A31 
2.28.3.4.6.9418 OTU 1 seq
prokMSA_id:75050 gamma clone JG37-AG-14
2.28.3.4.6.9545 OTU 2 seqs
prokMSA_id:47560 gamma MERTZ_2CM_261 
prokMSA_id:59789 clone BB2_140 
2.28.3.4.6.9595 OTU 1 seq
prokMSA_id:42746 Rhabdochromatium MT58 
2.28.3.5 ACHROMATIUM_ASSEMBLAGE 178 seqs
2.28.3.5.8169 OTU 1 seq
prokMSA_id:55388 clone RCP2-54 
2.28.3.5.8179 OTU 1 seq
prokMSA_id:39317 gamma n7d 
2.28.3.5.8183 OTU 1 seq
prokMSA_id:7620 unnamed organism
2.28.3.5.8213 OTU 1 seq
prokMSA_id:50129 gamma MERTZ_2CM_66 
2.28.3.5.8214 OTU 1 seq
prokMSA_id:7629 clone BPC023
2.28.3.5.8229 OTU 1 seq
prokMSA_id:7634 str. 46.m
2.28.3.5.8227 OTU 7 seqs
prokMSA_id:7621 unnamed organism
prokMSA_id:7622 unnamed organism
prokMSA_id:81388 Endosymbiont of Escarpia laminata 
prokMSA_id:81446 Endosymbiont of Lamellibrachia barhami AY129091
prokMSA_id:81571 Endosymbiont of Lamellibrachia barhami 
prokMSA_id:81637 Endosymbiont of Escarpia laminata AY129106
prokMSA_id:82463 Endosymbiont of Lamellibrachia barhami 
2.28.3.5.8234 OTU 2 seqs
prokMSA_id:7639 marine snow associated clone agg47
prokMSA_id:31566 gamma KTc1113 AF235115
2.28.3.5.8243 OTU 2 seqs
prokMSA_id:63759 Gamma IR 
prokMSA_id:65375 Selenate-reducing AK4OH1 
2.28.3.5.8240 OTU 1 seq
prokMSA_id:59167 Gamma RED77 
2.28.3.5.8249 OTU 1 seq
prokMSA_id:66569 Acidithiobacillus ferrooxidans strain DSM 2392
2.28.3.5.8261 OTU 1 seq
prokMSA_id:7628 symbiont of Solemya reidi gill
2.28.3.5.8275 OTU 1 seq
prokMSA_id:7641 str. Shinkai #6500
2.28.3.5.8287 OTU 1 seq
prokMSA_id:7649 symbiont of Solemya velum
2.28.3.5.8285 OTU 1 seq
prokMSA_id:7646 clone Sva0115
2.28.3.5.8291 OTU 1 seq
prokMSA_id:49895 gamma MERTZ_0CM_220 
2.28.3.5.8293 OTU 1 seq
prokMSA_id:37274 Sulfur-oxidizing OBII5 
2.28.3.5.8304 OTU 1 seq
prokMSA_id:7642 str. JTB35
2.28.3.5.8311 OTU 1 seq
prokMSA_id:7643 str. JTB254
2.28.3.5.8314 OTU 1 seq
prokMSA_id:40388 gamma clone CTD27B 
2.28.3.5.8324 OTU 1 seq
prokMSA_id:20997 gamma MERTZ_21CM_269 
2.28.3.5.8328 OTU 1 seq
prokMSA_id:7650 unnamed organism
2.28.3.5.8349 OTU 2 seqs
prokMSA_id:7636 clone Sva0864
prokMSA_id:7651 clone Sva0071
2.28.3.5.8354 OTU 1 seq
prokMSA_id:36334 gamma MERTZ_0CM_372 
2.28.3.5.8375 OTU 1 seq
prokMSA_id:79838 clone ARKIA-12 
2.28.3.5.8381 OTU 1 seq
prokMSA_id:20074 isolate HNSS31
2.28.3.5.8382 OTU 1 seq
prokMSA_id:48268 alpha MERTZ_0CM_244 
2.28.3.5.8391 OTU 1 seq
prokMSA_id:52144 gamma DSS54 
2.28.3.5.8390 OTU 1 seq
prokMSA_id:45822 gamma MERTZ_2CM_89 
2.28.3.5.8397 OTU 1 seq
prokMSA_id:77715 gamma clone Hyd24-13
2.28.3.5.8405 OTU 1 seq
prokMSA_id:22965 gamma clone 33-FL111B98 
2.28.3.5.8403 OTU 1 seq
prokMSA_id:65374 Selenate-reducing KE4OH1 
2.28.3.5.8423 OTU 6 seqs
prokMSA_id:25316 WD235 clone WD235
prokMSA_id:46141 clone WR176 AJ233555
prokMSA_id:47916 WD260 clone WD260 AJ292673
prokMSA_id:61519 gamma clone NOS7.145WL AY043699
prokMSA_id:76527 gamma clone C47.11PG AF431379
prokMSA_id:76553 clone N29.17SM AF432807
2.28.3.5.8425 OTU 1 seq
prokMSA_id:36242 SBRH70 
2.28.3.5.8447 OTU 1 seq
prokMSA_id:41625 gamma SA28 
2.28.3.5.8472 OTU 1 seq
prokMSA_id:66921 clone SHA-100
2.28.3.5.8488 OTU 1 seq
prokMSA_id:84942 clone D145 
2.28.3.5.8507 OTU 1 seq
prokMSA_id:74333 isolate CS_B046 
2.28.3.5.8512 OTU 1 seq
prokMSA_id:37006 gamma B2M54 
2.28.3.5.8515 OTU 1 seq
prokMSA_id:39848 clone KS86 
2.28.3.5.8522 OTU 1 seq
prokMSA_id:51403 gamma kpj02f 
2.28.3.5.8566 OTU 1 seq
prokMSA_id:47907 gamma MERTZ_2CM_277 
2.28.3.5.8588 OTU 1 seq
prokMSA_id:43149 gamma SB21 
2.28.3.5.8638 OTU 1 seq
prokMSA_id:24022 Maorithyas hadalis gill thioautotophic symbiont II ssrRNA 
2.28.3.5.8639 OTU 1 seq
prokMSA_id:57450 gamma clone P. palm A 79
2.28.3.5.8646 OTU 1 seq
prokMSA_id:78034 clone s30 
2.28.3.5.8651 OTU 1 seq
prokMSA_id:18389 gamma MERTZ_0CM_58 
2.28.3.5.8676 OTU 1 seq
prokMSA_id:37316 gamma DSS65 
2.28.3.5.8675 OTU 1 seq
prokMSA_id:45719 gamma MERTZ_0CM_77 
2.28.3.5.8724 OTU 1 seq
prokMSA_id:76026 gamma clone JG34-KF-155
2.28.3.5.8731 OTU 2 seqs
prokMSA_id:7609 Achromatium JD2
prokMSA_id:7610 Achromatium JD13
2.28.3.5.8733 OTU 1 seq
prokMSA_id:30959 clone KS75 
2.28.3.5.8759 OTU 1 seq
prokMSA_id:20176 Agricultural soil clone SC-I-87 
2.28.3.5.8774 OTU 1 seq
prokMSA_id:73147 gamma MERTZ_2CM_135 
2.28.3.5.8791 OTU 1 seq
prokMSA_id:51730 gamma MERTZ_2CM_304 
2.28.3.5.8789 OTU 1 seq
prokMSA_id:32932 gamma clone:TYM--7 
2.28.3.5.8818 OTU 1 seq
prokMSA_id:25726 gamma MERTZ_2CM_114 
2.28.3.5.8817 OTU 1 seq
prokMSA_id:78950 gamma clone JG30-KF-C10
2.28.3.5.8829 OTU 1 seq
prokMSA_id:43949 gamma MERTZ_0CM_387 
2.28.3.5.8834 OTU 1 seq
prokMSA_id:7578 str. BD7-8
2.28.3.5.8832 OTU 1 seq
prokMSA_id:37621 gamma MERTZ_2CM_53 
2.28.3.5.8833 OTU 1 seq
prokMSA_id:7577 str. Alvin #2837
2.28.3.5.8839 OTU 1 seq
prokMSA_id:32189 marine ZD0408 
2.28.3.5.8867 OTU 1 seq
prokMSA_id:39796 Metal-contaminated soil clone K20-18 
2.28.3.5.8874 OTU 2 seqs
prokMSA_id:55790 isolate CS_B021 
prokMSA_id:67774 isolate C1_B038 
2.28.3.5.8871 OTU 2 seqs
prokMSA_id:25823 clone KS59 
prokMSA_id:36493 clone KS72 
2.28.3.5.8882 OTU 1 seq
prokMSA_id:74812 Gamma KT0813 
2.28.3.5.8881 OTU 1 seq
prokMSA_id:32280 Solemya terraeregina gill symbiont 
2.28.3.5.8911 OTU 1 seq
prokMSA_id:7600 clone BURTON-10
2.28.3.5.8920 OTU 1 seq
prokMSA_id:7601 clone ACE-21
2.28.3.5.8926 OTU 1 seq
prokMSA_id:79212 sequences clone: IheB2-13
2.28.3.5.8941 OTU 1 seq
prokMSA_id:7606 symbiont of Lucina pectinata gill
2.28.3.5.8942 OTU 2 seqs
prokMSA_id:7607 Achromatium minus. AJ010595
prokMSA_id:7608 Achromatium minus
2.28.3.5.8957 OTU 1 seq
prokMSA_id:45930 gamma Arctic97C-5 
2.28.3.5.8960 OTU 1 seq
prokMSA_id:41892 gamma MERTZ_2CM_55 
2.28.3.5.8971 OTU 2 seqs
prokMSA_id:17654 Agricultural soil clone SC-I-47 AJ252637
prokMSA_id:34477 Agricultural soil clone SC-I-85 
2.28.3.5.8985 OTU 1 seq
prokMSA_id:26590 gamma MERTZ_2CM_252 
2.28.3.5.8982 OTU 3 seqs
prokMSA_id:7591 Achromatium oxaliferum
prokMSA_id:7592 Achromatium oxaliferum
prokMSA_id:7595 Achromatium HK9
2.28.3.5.8990 OTU 1 seq
prokMSA_id:42308 clone 
2.28.3.5.8998 OTU 1 seq
prokMSA_id:7614 str. BD2-7
2.28.3.5.9007 OTU 3 seqs
prokMSA_id:37302 Thiothrix sp. EJ1M-B 
prokMSA_id:38006 Thiothrix sp. EJ2M-B 
prokMSA_id:43018 Thiothrix sp. SNR-3 
2.28.3.5.9018 OTU 1 seq
prokMSA_id:48991 gamma MERTZ_2CM_279 
2.28.3.5.9022 OTU 1 seq
prokMSA_id:7619 str. Alvin #2839
2.28.3.5.9021 OTU 1 seq
prokMSA_id:7618 str. KI89C
2.28.3.5.9051 OTU 1 seq
prokMSA_id:70339 Sulfur-oxidizing NDII1.2 
2.28.3.5.9052 OTU 1 seq
prokMSA_id:78110 clone s18 
2.28.3.5.9086 OTU 1 seq
prokMSA_id:7580 symbiont of Solemya reidi
2.28.3.5.9094 OTU 1 seq
prokMSA_id:35114 clone SL6 
2.28.3.5.9090 OTU 1 seq
prokMSA_id:7585 symbiont of Anodontia phillipiana bivalve mollusc gill
2.28.3.5.9107 OTU 2 seqs
prokMSA_id:7583 symbiont of Lucina floridana gill
prokMSA_id:7640 symbiont of Codakia costata gill
2.28.3.5.9105 OTU 1 seq
prokMSA_id:37275 sponge symbiont JAWS6 
2.28.3.5.9114 OTU 1 seq
prokMSA_id:7593 Achromatium JD1
2.28.3.5.9120 OTU 1 seq
prokMSA_id:17560 clone KS90 
2.28.3.5.9119 OTU 1 seq
prokMSA_id:7594 Achromatium JD8
2.28.3.5.9128 OTU 1 seq
prokMSA_id:7617 symbiont of Lucina nassula
2.28.3.5.9124 OTU 1 seq
prokMSA_id:69316 gamma clone DC8-80-1 
2.28.3.5.9125 OTU 1 seq
prokMSA_id:7596 Achromatium HK13
2.28.3.5.9129 OTU 1 seq
prokMSA_id:40146 gamma B2M23 
2.28.3.5.9130 OTU 1 seq
prokMSA_id:7598 symbiont of Codakia orbicularis gill
2.28.3.5.9155 OTU 1 seq
prokMSA_id:27330 gamma MERTZ_2CM_110 
2.28.3.5.9178 OTU 6 seqs
prokMSA_id:7602 Achromatium HK3
prokMSA_id:7603 Achromatium HK6
prokMSA_id:7604 Achromatium HK24
prokMSA_id:7611 Achromatium HK1. AF129552
prokMSA_id:7612 Achromatium HK2
prokMSA_id:7613 Achromatium HK15
2.28.3.5.9187 OTU 1 seq
prokMSA_id:52794 gamma MERTZ_0CM_113 
2.28.3.5.9195 OTU 1 seq
prokMSA_id:24728 gamma MERTZ_2CM_182 
2.28.3.5.9220 OTU 7 seqs
prokMSA_id:81173 Endosymbiont of Escarpia laminata AY129108
prokMSA_id:81211 Endosymbiont of Lamellibrachia sp. 1 
prokMSA_id:81526 Endosymbiont of Lamellibrachia barhami 
prokMSA_id:81727 Endosymbiont of Lamellibrachia barhami 
prokMSA_id:81952 Endosymbiont of Escarpia laminata 
prokMSA_id:82094 Endosymbiont of Escarpia laminata AY129109
prokMSA_id:82451 Endosymbiont of Lamellibrachia barhami 
2.28.3.5.9229 OTU 1 seq
prokMSA_id:18424 Thiobacillus prosperus 
2.28.3.5.9278 OTU 1 seq
prokMSA_id:41685 gamma MERTZ_2CM_265 
2.28.3.5.9317 OTU 1 seq
prokMSA_id:38399 gamma MERTZ_2CM_167 
2.28.3.5.9315 OTU 1 seq
prokMSA_id:37738 ECS42 
2.28.3.5.9316 OTU 1 seq
prokMSA_id:34593 gamma ARCT1-45 
2.28.3.5.9338 OTU 1 seq
prokMSA_id:23199 gamma MERTZ_2CM_300 
2.28.3.5.9354 OTU 1 seq
prokMSA_id:76053 gamma clone JG37-AG-87
2.28.3.5.9356 OTU 1 seq
prokMSA_id:34480 gamma SA50 
2.28.3.5.9387 OTU 1 seq
prokMSA_id:7616 clone Sva1046
2.28.3.5.9396 OTU 1 seq
prokMSA_id:72638 Sulfur-oxidizing OAII2 
2.28.3.5.9394 OTU 1 seq
prokMSA_id:59790 clone BB2_230 
2.28.3.5.9413 OTU 1 seq
prokMSA_id:83295 clone CCM19a 
2.28.3.5.9434 OTU 1 seq
prokMSA_id:31156 gamma MERTZ_0CM_330 
2.28.3.5.9452 OTU 1 seq
prokMSA_id:7586 Dechloromarinus chlorophilus str. NSS
2.28.3.5.9456 OTU 1 seq
prokMSA_id:7587 str. JTB23
2.28.3.5.9461 OTU 1 seq
prokMSA_id:45103 PENDANT-13 
2.28.3.5.9482 OTU 1 seq
prokMSA_id:43943 gamma MERTZ_0CM_369 
2.28.3.5.9485 OTU 1 seq
prokMSA_id:7599 clone HstpL26
2.28.3.5.9492 OTU 1 seq
prokMSA_id:24359 gamma MERTZ_21CM_112 
2.28.3.5.9490 OTU 1 seq
prokMSA_id:36950 gamma clone R13 
2.28.3.5.9521 OTU 1 seq
prokMSA_id:49500 gamma MERTZ_0CM_85 
2.28.3.5.9524 OTU 1 seq
prokMSA_id:48069 gamma MERTZ_0CM_211 
2.28.3.5.9531 OTU 1 seq
prokMSA_id:17992 marine ZD0417 
2.28.3.5.9544 OTU 1 seq
prokMSA_id:53877 gamma MERTZ_21CM_103 
2.28.3.5.9549 OTU 1 seq
prokMSA_id:31454 gamma B2M60 
2.28.3.5.9555 OTU 1 seq
prokMSA_id:42118 gamma TK12 
2.28.3.5.9556 OTU 6 seqs
prokMSA_id:81502 Endosymbiont of Seepiophila jonesi 
prokMSA_id:81773 Endosymbiont of Lamellibrachia sp. 2 
prokMSA_id:81896 Endosymbiont of Seepiophila jonesi AY129087
prokMSA_id:82009 Endosymbiont of Seepiophila jonesi 
prokMSA_id:82064 Endosymbiont of Seepiophila jonesi 
prokMSA_id:82292 Endosymbiont of Lamellibrachia sp. 2 
2.28.3.5.9559 OTU 1 seq
prokMSA_id:67775 isolate C1_B021 
2.28.3.5.9574 OTU 1 seq
prokMSA_id:32355 gamma clone Ebpr13 
2.28.3.5.9577 OTU 1 seq
prokMSA_id:24814 gamma B2M61 
2.28.3.5.9583 OTU 1 seq
prokMSA_id:44804 gamma clone:TYM--8 
2.28.3.5.9596 OTU 1 seq
prokMSA_id:34312 gamma SB09 
2.28.3.5.9605 OTU 1 seq
prokMSA_id:42463 MS11 
2.28.3.5.9609 OTU 1 seq
prokMSA_id:48635 gamma clone 123 
2.28.3.6 FRANCISELLA_GROUP 106 seqs
2.28.3.6.1 THTX.NIVEA_SUBGROUP 20 seqs
2.28.3.6.1.8176 OTU 5 seqs
prokMSA_id:18561 Thiothrix eikelboomii strain:COM-A AB042542
prokMSA_id:19111 Thiothrix eikelboomii strain:T2-1 AB042541
prokMSA_id:39802 Thiothrix eikelboomii strain:KR-A
prokMSA_id:43111 Thiothrix eikelboomii 
prokMSA_id:46905 Thiothrix eikelboomii strain:T1-4 AB042540
2.28.3.6.1.8221 OTU 7 seqs
prokMSA_id:18257 Thiothrix sp. B2-8 AB042537
prokMSA_id:29316 Thiothrix sp. OS-F AB042538
prokMSA_id:30988 Thiothrix sp. B2-7 AB042534
prokMSA_id:31294 Thiothrix sp. B5-1 AB042536
prokMSA_id:34556 Thiothrix sp. B3-1 
prokMSA_id:47122 Thiothrix sp. SCM-A AB042535
prokMSA_id:71364 Thiothrix sp. B4-1 
2.28.3.6.1.8264 OTU 1 seq
prokMSA_id:38771 Leucothrix kpa90rc 
2.28.3.6.1.8332 OTU 1 seq
prokMSA_id:7652 Leucothrix mucor
2.28.3.6.1.8355 OTU 1 seq
prokMSA_id:7656 Thiothrix ramosa
2.28.3.6.1.8353 OTU 1 seq
prokMSA_id:7655 Thiothrix nivea str. JP2 DSM 5205
2.28.3.6.1.8804 OTU 3 seqs
prokMSA_id:29860 mRNA clone sipK4 AJ307933
prokMSA_id:82296 Thiothrix sp. clone BIOEST-42 AJ548931
prokMSA_id:86244 gamma clone LKC2.127-27 
2.28.3.6.1.9189 OTU 1 seq
prokMSA_id:18746 Thiothrix sp. CT3 
2.28.3.6.2 CALYPTOGENA_SYMBIONTS_SUBGROUP 24 seqs
2.28.3.6.2.8357 OTU 1 seq
prokMSA_id:7659 symbiont of mussel thioautotrophic gill
2.28.3.6.2.8383 OTU 1 seq
prokMSA_id:7660 symbiont of Vesicomya chordata gill
2.28.3.6.2.8424 OTU 1 seq
prokMSA_id:7675 symbiont of Calyptogena elongata gill
2.28.3.6.2.8605 OTU 15 seqs
prokMSA_id:7662 unnamed organism. AF035722
prokMSA_id:7664 unnamed organism
prokMSA_id:7669 unnamed organism
prokMSA_id:7670 unnamed organism
prokMSA_id:7671 symbiont of Calyptogena sp. L25708
prokMSA_id:7672 unnamed organism
prokMSA_id:7674 unnamed organism
prokMSA_id:7676 unnamed organism. AF035719
prokMSA_id:39558 marine ZD0405 
prokMSA_id:67478 Endosymbiont of Bathymodiolus sp
prokMSA_id:67479 Endosymbiont of Calyptogena laubieri 
prokMSA_id:79242 clone ZA2525c AF382104
prokMSA_id:79277 clone ZA2329c AF382101
prokMSA_id:79347 clone ZA2514c 
prokMSA_id:90283 Endosymbiont of Calyptogena packardana AY310508
2.28.3.6.2.8654 OTU 1 seq
prokMSA_id:79550 sequences clone: IheB2-31
2.28.3.6.2.8953 OTU 1 seq
prokMSA_id:45202 gamma Arctic96BD-19 
2.28.3.6.2.8961 OTU 1 seq
prokMSA_id:7673 symbiont of Calyptogena magnifica
2.28.3.6.2.8965 OTU 1 seq
prokMSA_id:7677 symbiont of Bathymodiolus thermophilus gill
2.28.3.6.2.8966 OTU 1 seq
prokMSA_id:21943 Maorithyas hadalis gill thioautotophic symbiont I ssrRNA 
2.28.3.6.2.9474 OTU 1 seq
prokMSA_id:41094 Bathymodiolus septemdierum thioautotrophic gill symbiont 
2.28.3.6.3 TMS.FRISIA_SUBGROUP 28 seqs
2.28.3.6.3.8452 OTU 1 seq
prokMSA_id:7680 Hydrogenovibrio marinus str. MH-110 JCM 7688
2.28.3.6.3.8498 OTU 1 seq
prokMSA_id:7692 Thiomicrospira SL-1 str. SL-1
2.28.3.6.3.8500 OTU 1 seq
prokMSA_id:7695 Thiomicrospira kuenenii str. JB-A1
2.28.3.6.3.8501 OTU 1 seq
prokMSA_id:7696 Thiomicrospira chilensis str. Ch-1
2.28.3.6.3.8623 OTU 2 seqs
prokMSA_id:7691 Thiomicrospira sp. str. MA2-6
prokMSA_id:7693 clone SB-3
2.28.3.6.3.8664 OTU 2 seqs
prokMSA_id:7698 Thiomicrospira Milos-T2 str. Milos-T2
prokMSA_id:7700 Thiomicrospira sp. str. Milos T-2
2.28.3.6.3.8806 OTU 1 seq
prokMSA_id:72885 DS-1 
2.28.3.6.3.8845 OTU 2 seqs
prokMSA_id:62494 Piscirickettsia group clone LA1-B44N 
prokMSA_id:62496 Piscirickettsia group clone LA7-B48N 
2.28.3.6.3.9006 OTU 2 seqs
prokMSA_id:7681 Thiomicrospira Milos-T1 str. Milos-T1. AJ237757
prokMSA_id:7682 Thiomicrospira sp. str. Milos T-1
2.28.3.6.3.9027 OTU 6 seqs
prokMSA_id:7683 Thiomicrospira sp. str. L12
prokMSA_id:7687 Thiomicrospira L-12 str. L-12
prokMSA_id:7688 Thiomicrospira crunogena str. XCL-2
prokMSA_id:7689 Thiomicrospira crunogena str. MA-3 ATCC 700270
prokMSA_id:7690 Thiomicrospira JB-B2 str. JB-B2
prokMSA_id:75896 Thiomicrospira crunogena isolate HY-62
2.28.3.6.3.9299 OTU 4 seqs
prokMSA_id:23549 Thiomicrospira sp. Tms-MPN/4-6 mm depth
prokMSA_id:70822 Thiomicrospira sp. Tms-MPN/10-12 mm depth
prokMSA_id:71356 Thiomicrospira sp. Tms-MPN/22-24 mm depth AJ011072
prokMSA_id:72319 Thiomicrospira sp. Tms-MPN/14-16 mm depth AJ011071
2.28.3.6.3.9405 OTU 1 seq
prokMSA_id:44251 gamma Arctic96AD-9 
2.28.3.6.3.9557 OTU 1 seq
prokMSA_id:61883 gamma clone R76-B23 
2.28.3.6.3.9652 OTU 3 seqs
prokMSA_id:7697 Thiomicrospira frisia str. JB-A2
prokMSA_id:7699 Thiomicrospira Art-3 str. Art-3
prokMSA_id:82186 clone KM53 
2.28.3.6.4 TMS.THYASIRAE_SUBGROUP 6 seqs
2.28.3.6.4.8799 OTU 1 seq
prokMSA_id:7706 Thiomicrospira thyasirae str. TG-2 DSM 5322
2.28.3.6.4.8849 OTU 1 seq
prokMSA_id:62732 gamma clone ML617.5J-13 
2.28.3.6.4.9352 OTU 1 seq
prokMSA_id:7704 Thioalcalomicrobium sibericum str. AL7
2.28.3.6.4.9362 OTU 3 seqs
prokMSA_id:7702 Thiomicrospira thyasirae str. TG-2 DSM 5322
prokMSA_id:7705 Thiomicrospira JB-A1F str. JB-A1F
prokMSA_id:75723 gamma clone Gitt-KF-166
2.28.3.6.5 MP.MARINA_SUBGROUP 21 seqs
2.28.3.6.5.8595 OTU 1 seq
prokMSA_id:81639 Dibenzofuran-degrading DBF-MAK 
2.28.3.6.5.8644 OTU 2 seqs
prokMSA_id:7719 Methylophaga thalassica ATCC 33146
prokMSA_id:7720 Methylophaga sulfidovorans str. RB-1; 94-792 LMD 95.210 . X9
2.28.3.6.5.9271 OTU 10 seqs
prokMSA_id:7709 Cycloclasticus G str. G
prokMSA_id:7710 Cycloclasticus E str. E
prokMSA_id:7711 Cycloclasticus W str. W
prokMSA_id:7712 Cycloclasticus oligotrophus
prokMSA_id:7713 Cycloclasticus N3-PA321 str. N3-PA321
prokMSA_id:19033 Cycloclasticus spirillensus 
prokMSA_id:56290 Cycloclasticus sp. E3 
prokMSA_id:61169 Cycloclasticus sp. H4 
prokMSA_id:61170 Cycloclasticus sp. E2 
prokMSA_id:61177 Cycloclasticus sp. A5 AB080111
2.28.3.6.5.9291 OTU 2 seqs
prokMSA_id:66020 Methylophaga alcalica 
prokMSA_id:86185 Methylophaga buryatica 
2.28.3.6.5.9303 OTU 1 seq
prokMSA_id:80637 clone ARKIA-123 
2.28.3.6.5.9392 OTU 3 seqs
prokMSA_id:61960 Methylophaga sp. V4.MO.19 
prokMSA_id:71369 Methylophaga sp. V4.ME.29 
prokMSA_id:71631 Methylophaga sp. V4.MS.17 
2.28.3.6.5.9538 OTU 1 seq
prokMSA_id:7718 clone HstpL93
2.28.3.6.5.9536 OTU 1 seq
prokMSA_id:7715 clone FL5
2.28.3.6.6 FNC.TULARENSIS_SUBGROUP 7 seqs
2.28.3.6.6.8692 OTU 5 seqs
prokMSA_id:7733 Piscirickettsia salmonis str. LF-89
prokMSA_id:7734 Piscirickettsia salmonis str. ATL-4-91. U36915
prokMSA_id:7735 Piscirickettsia salmonis str. EM-90
prokMSA_id:7736 Piscirickettsia salmonis str. NOR-92
prokMSA_id:71348 Piscirickettsia salmonis complete 
2.28.3.6.6.9180 OTU 1 seq
prokMSA_id:7757 Francisella tularensis subsp. tularensis str. lvs ATCC 6223
2.28.3.6.6.9554 OTU 1 seq
prokMSA_id:26984 Tilapia parasite TPT-541 
2.28.3.7 DICHELOBACTER_GROUP 21 seqs
2.28.3.7.8231 OTU 1 seq
prokMSA_id:78828 gamma clone JG30a-KF-21
2.28.3.7.8536 OTU 2 seqs
prokMSA_id:7763 Cardiobacterium hominis ATCC 15826
prokMSA_id:7766 Cardiobacterium A str. AB 2167
2.28.3.7.8704 OTU 1 seq
prokMSA_id:7760 clone BPC028
2.28.3.7.8721 OTU 1 seq
prokMSA_id:7764 clone v1
2.28.3.7.8756 OTU 1 seq
prokMSA_id:7759 Thiobacillus sp. str. W5
2.28.3.7.8765 OTU 1 seq
prokMSA_id:7765 Cardiobacterium B str. AB 2168
2.28.3.7.8823 OTU 2 seqs
prokMSA_id:84768 clone CCD9 
prokMSA_id:85458 clone CCU5 
2.28.3.7.8857 OTU 2 seqs
prokMSA_id:7768 Dichelobacter nodosus
prokMSA_id:7769 Dichelobacter nodosus str. 198A ATCC 27521
2.28.3.7.8884 OTU 1 seq
prokMSA_id:66337 Halothiobacillus sp. RA13 
2.28.3.7.9153 OTU 1 seq
prokMSA_id:19288 Halothiobacillus kellyi 
2.28.3.7.9181 OTU 1 seq
prokMSA_id:44985 Thiobacillus neapolitanus DSM 581 
2.28.3.7.9306 OTU 3 seqs
prokMSA_id:7758 Thiobacillus hydrothermalis str. R3 DSM 7121
prokMSA_id:19960 Thiobacillus sp. MS02 
prokMSA_id:76987 Halothiobacillus hydrothermalis isolate HY-66
2.28.3.7.9441 OTU 2 seqs
prokMSA_id:7761 Thiobacillus halophilus
prokMSA_id:62497 Chromatiaceae clone LAS-B37N 
2.28.3.7.9448 OTU 1 seq
prokMSA_id:66599 Halothiobacillus sp. WJ18 
2.28.3.7.9453 OTU 1 seq
prokMSA_id:65940 Cardiobacterium valvarum 
2.28.3.8 XANTHOMONAS_GROUP 353 seqs
2.28.3.8.1 NV.RAMOSA_SUBGROUP 26 seqs
2.28.3.8.1.8238 OTU 1 seq
prokMSA_id:51220 WD280 clone WD280
2.28.3.8.1.8339 OTU 7 seqs
prokMSA_id:29007 rape rhizosphere wr0008 
prokMSA_id:46403 WD284 clone WD284
prokMSA_id:65452 clone a13140 
prokMSA_id:65456 clone a13133 
prokMSA_id:65459 clone a13128 AY102326
prokMSA_id:65468 clone a13109 
prokMSA_id:77626 gamma clone:APe4_56
2.28.3.8.1.8360 OTU 1 seq
prokMSA_id:17673 gamma MN 154.3 isolate MN 154.3
2.28.3.8.1.8411 OTU 1 seq
prokMSA_id:24744 gamma GR-296.I.104 
2.28.3.8.1.8532 OTU 1 seq
prokMSA_id:76705 gamma clone JG36-TzT-191
2.28.3.8.1.8585 OTU 3 seqs
prokMSA_id:7774 str. rJ4
prokMSA_id:7775 str. rJ5
prokMSA_id:7776 str. LX1
2.28.3.8.1.8847 OTU 3 seqs
prokMSA_id:7771 Nevskia ramosa str. Soe1 DSM 11499
prokMSA_id:7772 Nevskia ramosa
prokMSA_id:7773 Nevskia ramosa str. OL1
2.28.3.8.1.8943 OTU 1 seq
prokMSA_id:82757 clone CCM14b 
2.28.3.8.1.9053 OTU 1 seq
prokMSA_id:19213 
2.28.3.8.1.9167 OTU 1 seq
prokMSA_id:78320 gamma clone:APe4_38
2.28.3.8.1.9403 OTU 1 seq
prokMSA_id:36572 clone t002 
2.28.3.8.1.9458 OTU 1 seq
prokMSA_id:75633 gamma clone JG37-AG-94
2.28.3.8.1.9459 OTU 2 seqs
prokMSA_id:49006 clone t041 
prokMSA_id:49267 clone t022 
2.28.3.8.1.9590 OTU 2 seqs
prokMSA_id:29157 Lake Michigan sediment LMBA45 
prokMSA_id:32297 Lake Michigan sediment LMBA45 
2.28.3.8.2 RHN.LINDANICLASTICUS_SUBGROUP 63 seqs
2.28.3.8.2.8210 OTU 1 seq
prokMSA_id:16767 Pietermaritzburg Y17-8 
2.28.3.8.2.8241 OTU 1 seq
prokMSA_id:21240 gamma clone BIsii4
2.28.3.8.2.8271 OTU 1 seq
prokMSA_id:50142 mRNA clone sipK9
2.28.3.8.2.8325 OTU 1 seq
prokMSA_id:81595 clone KD2-145 
2.28.3.8.2.8482 OTU 1 seq
prokMSA_id:17177 Gamma A40-1 
2.28.3.8.2.8518 OTU 1 seq
prokMSA_id:20263 Arsenic resistant soil 7-03 
2.28.3.8.2.8620 OTU 1 seq
prokMSA_id:43741 GR-Sh1-148 clone GR-Sh1-148
2.28.3.8.2.8689 OTU 31 seqs
prokMSA_id:26239 Gamma S-N1-6B AB074730
prokMSA_id:31970 Rhodanobacter sp. D46 AF250415
prokMSA_id:39014 Gamma S-N2-25A AB074734
prokMSA_id:63037 Denitrifying JA2 AY122309
prokMSA_id:63045 Denitrifying JA1 AY122297
prokMSA_id:63047 Denitrifying IA1 AY122296
prokMSA_id:68655 clone KRA30-20 AY081991
prokMSA_id:71415 Fulvimonas soli strain LMG 19981T
prokMSA_id:74583 Denitrifying LA2 AY122310
prokMSA_id:77470 gamma pIF16S1-2 AY139001
prokMSA_id:77578 gamma clone:APe2_19 AB074599
prokMSA_id:78230 gamma clone:APe2_13 AB074598
prokMSA_id:81095 clone KD9-60 
prokMSA_id:81116 clone KD9-21 AY218663
prokMSA_id:81191 clone KD8-79 AY218693
prokMSA_id:81358 clone KD7-52 
prokMSA_id:81396 clone KD8-97 AY218698
prokMSA_id:81522 clone KD9-56 
prokMSA_id:81676 clone KD5-100 
prokMSA_id:81711 clone KD5-9 AY218742
prokMSA_id:81832 clone KD9-164 AY218660
prokMSA_id:81880 clone KD6-1 
prokMSA_id:82101 clone KD3-139 
prokMSA_id:82208 clone KD6-121 AY218750
prokMSA_id:82232 clone KD7-103 
prokMSA_id:82238 clone KD5-73 
prokMSA_id:82264 clone KD9-127 AY218655
prokMSA_id:82308 clone KD9-70 AY218675
prokMSA_id:82392 clone KD9-126 AY218654
prokMSA_id:82446 clone KD7-5 AY218712
prokMSA_id:83501 clone ABLCf21 
2.28.3.8.2.8717 OTU 1 seq
prokMSA_id:50262 Frateuria sp. NO-16 
2.28.3.8.2.8793 OTU 1 seq
prokMSA_id:7780 Frateuria aurantia IFO 3245
2.28.3.8.2.8794 OTU 1 seq
prokMSA_id:7781 clone BURTON-35
2.28.3.8.2.8807 OTU 1 seq
prokMSA_id:7777 Rhodanobacter lindaniclasticus str. RP5557 LMG 18385
2.28.3.8.2.8824 OTU 1 seq
prokMSA_id:7778 clone TRA5-3
2.28.3.8.2.8909 OTU 1 seq
prokMSA_id:80066 clone KD4-116 
2.28.3.8.2.9001 OTU 1 seq
prokMSA_id:28808 Pietermaritzburg Y14-2 
2.28.3.8.2.9045 OTU 1 seq
prokMSA_id:67341 Rhodanobacter sp. BPC1 
2.28.3.8.2.9160 OTU 1 seq
prokMSA_id:81447 clone KD6-7 
2.28.3.8.2.9211 OTU 1 seq
prokMSA_id:81089 clone KD8-80 
2.28.3.8.2.9277 OTU 1 seq
prokMSA_id:79105 clone KD8-68 
2.28.3.8.2.9281 OTU 1 seq
prokMSA_id:26701 gamma clone BIci4
2.28.3.8.2.9284 OTU 1 seq
prokMSA_id:34580 gamma clone BIhiii13
2.28.3.8.2.9319 OTU 8 seqs
prokMSA_id:79255 clone KD5-58 
prokMSA_id:79780 clone KD3-82 
prokMSA_id:79852 clone KD1-149 
prokMSA_id:81132 clone KD6-20 
prokMSA_id:81196 clone KD6-83 
prokMSA_id:81363 clone KD7-89 
prokMSA_id:81461 clone KD9-36 
prokMSA_id:82402 clone KD8-16 
2.28.3.8.2.9330 OTU 1 seq
prokMSA_id:79383 Swingsiella fulva 
2.28.3.8.2.9332 OTU 1 seq
prokMSA_id:66606 Gamma WJ2 
2.28.3.8.2.9379 OTU 1 seq
prokMSA_id:82442 clone KD3-39 
2.28.3.8.2.9644 OTU 1 seq
prokMSA_id:82320 clone KD2-87 
2.28.3.8.4 LYB.ANTIBIOTICUS_SUBGROUP 45 seqs
2.28.3.8.4.8392 OTU 1 seq
prokMSA_id:81039 clone KD2-14 
2.28.3.8.4.8414 OTU 1 seq
prokMSA_id:81488 clone KD5-24 
2.28.3.8.4.8925 OTU 2 seqs
prokMSA_id:25970 gamma clone SM2E06 
prokMSA_id:44041 gamma clone SM1E08 
2.28.3.8.4.8972 OTU 1 seq
prokMSA_id:75877 gamma clone S15A-MN135
2.28.3.8.4.8983 OTU 16 seqs
prokMSA_id:7783 Pele's Vents clone PVB_25
prokMSA_id:7784 Pele's Vents clone PVB_3 PVB_5
prokMSA_id:7785 str. N4-7
prokMSA_id:7786 str. ES-1
prokMSA_id:7788 Xanthomonas sp. str. AK
prokMSA_id:7789 Pele's Vents clone PVB_47. U15113
prokMSA_id:7790 Lysobacter antibioticus str. Ly a2 DSM 2044
prokMSA_id:20839 Soil S65D1 
prokMSA_id:27494 Lysobacter sp. C3 
prokMSA_id:35183 clone UASB_brew_B36 AF332715
prokMSA_id:52059 Lysobacter enzymogenes strain DSM 2043T
prokMSA_id:59175 Beta KIN190 AY136098
prokMSA_id:60837 clone SG2-145 
prokMSA_id:61184 Lysobacter sp. IB-9374 
prokMSA_id:73870 Xanthomonas sp. 1018 
prokMSA_id:93932 gamma- clone Gitt-GS-126 AJ582198
2.28.3.8.4.9031 OTU 1 seq
prokMSA_id:59535 Enrichment culture LB-P clone LB-P 
2.28.3.8.4.9040 OTU 1 seq
prokMSA_id:40248 clone t027 
2.28.3.8.4.9055 OTU 2 seqs
prokMSA_id:7792 Xanthomonas ML-122 str. ML-122
prokMSA_id:50378 Xanthomonas sp. ML-168b 
2.28.3.8.4.9241 OTU 3 seqs
prokMSA_id:66232 Thermomonas haemolytica isolate TG15 
prokMSA_id:76111 Thermomonas fusca strain LMG 21739
prokMSA_id:76350 Thermomonas fusca strain LMG 21738
2.28.3.8.4.9259 OTU 2 seqs
prokMSA_id:17521 Lysobacter sp. XL1 
prokMSA_id:83249 Lysobacter sp. 2CBAB 
2.28.3.8.4.9320 OTU 5 seqs
prokMSA_id:60986 clone a13161 
prokMSA_id:65454 clone a13138 
prokMSA_id:65466 clone a13112 AY102319
prokMSA_id:65469 clone a13106 
prokMSA_id:74443 gamma clone BIyi3 AJ318204
2.28.3.8.4.9426 OTU 1 seq
prokMSA_id:7791 str. rJ15
2.28.3.8.4.9449 OTU 1 seq
prokMSA_id:7793 Luteimonas mephitis str. B1953/27.1
2.28.3.8.4.9464 OTU 1 seq
prokMSA_id:72899 candidate division BD clone BDfull1 
2.28.3.8.4.9623 OTU 2 seqs
prokMSA_id:39084 gamma clone SM1E05 
prokMSA_id:39919 gamma clone SM1E04 
2.28.3.8.4.9639 OTU 5 seqs
prokMSA_id:66233 Thermomonas haemolytica isolate TJ7 
prokMSA_id:66235 Thermomonas haemolytica isolate S5 
prokMSA_id:66236 Thermomonas haemolytica isolate S2 
prokMSA_id:66237 Thermomonas haemolytica isolate N22 
prokMSA_id:66239 Thermomonas haemolytica isolate N4 
2.28.3.8.5 STE.MALTOPHILIA_SUBGROUP 148 seqs
2.28.3.8.5.8541 OTU 1 seq
prokMSA_id:60330 clone Phe2 
2.28.3.8.5.8577 OTU 144 seqs
prokMSA_id:7795 Stenotrophomonas africae str. MGB
prokMSA_id:7800 Stenotrophomonas maltophilia str. N4-15
prokMSA_id:7801 Pseudomonas pictorum ATCC 23328. AB021392
prokMSA_id:7803 Pseudomonas hibiscicola ATCC 19867
prokMSA_id:7806 Stenotrophomonas sp. Y13836
prokMSA_id:7807 Stenotrophomonas maltophilia LMG 957
prokMSA_id:7808 Stenotrophomonas maltophilia LMG 10991
prokMSA_id:7809 Stenotrophomonas maltophilia LMG 981. AJ131116
prokMSA_id:7810 Stenotrophomonas maltophilia str. VUN 10 010
prokMSA_id:7811 Stenotrophomonas maltophilia str. VUN 10 012
prokMSA_id:7812 Stenotrophomonas nitritireducens str. L2. AJ012229
prokMSA_id:7813 Stenotrophomonas nitritireducens str. B1910/29.1
prokMSA_id:7815 Stenotrophomonas maltophilia LMG 11114
prokMSA_id:7816 Stenotrophomonas maltophilia str. BL
prokMSA_id:7819 Stenotrophomonas maltophilia LMG 10879
prokMSA_id:7820 Stenotrophomonas maltophilia LMG 10882. AJ131905
prokMSA_id:7821 Stenotrophomonas maltophilia LMG 10883. AJ131906
prokMSA_id:7822 Stenotrophomonas maltophilia LMG 10989
prokMSA_id:7826 Stenotrophomonas maltophilia ATCC 13637
prokMSA_id:7828 Stenotrophomonas maltophilia str. VUN10075
prokMSA_id:7829 Stenotrophomonas maltophilia LMG 10851
prokMSA_id:7834 Stenotrophomonas maltophilia LMG 10853. AJ131914
prokMSA_id:7856 Xanthomonas bromi LMG 947
prokMSA_id:7857 Xanthomonas vesicatoria LMG 911
prokMSA_id:7858 Xanthomonas oryzae LMG 5047
prokMSA_id:7861 Xanthomonas populi LMG 5743
prokMSA_id:7862 Xanthomonas sacchari LMG 471 . Y10766
prokMSA_id:7866 Xanthomonas pisi LMG 847
prokMSA_id:7869 Xanthomonas fragariae LMG 708
prokMSA_id:7871 Xanthomonas axonopodis LMG 538
prokMSA_id:7872 Xanthomonas campestris LMG 568
prokMSA_id:7874 Xanthomonas campestris pv. campestris AF188831
prokMSA_id:7876 Xanthomonas campestris str. Xc17
prokMSA_id:7878 Xanthomonas melonis LMG 8670
prokMSA_id:7879 Xanthomonas translucens LMG 876
prokMSA_id:7880 Xanthomonas campestris LMG 726
prokMSA_id:7883 Xanthomonas codiaei LMG 8678
prokMSA_id:7887 Xanthomonas arboricola LMG 747 . Y10757
prokMSA_id:7888 Xanthomonas cucurbitae str. LMG
prokMSA_id:7889 Xanthomonas hyacinthi LMG 739
prokMSA_id:7890 Xanthomonas cassavae LMG 673
prokMSA_id:7891 Xanthomonas theicola LMG 8684
prokMSA_id:7892 Xanthomonas hortorum LMG 733 . Y10759
prokMSA_id:7894 Xanthomonas albilineans LMG 494
prokMSA_id:7896 Xanthomonas vasicola LMG 736
prokMSA_id:7897 Xanthomonas campestris str. L2
prokMSA_id:7898 Pseudomonas cissicola ATCC 33616
prokMSA_id:7901 Xanthomonas campestris LMG 682
prokMSA_id:16822 Xanthomonas cynarae 
prokMSA_id:16875 clone GL178.1 
prokMSA_id:17727 Pseudoxanthomonas sp. M1-2 AB039329
prokMSA_id:17961 Stenotrophomonas sp. 3A3C AF368754
prokMSA_id:18200 Stenotrophomonas maltophilia clone IrT-JG14-12
prokMSA_id:18402 Stenotrophomonas maltophilia isolate VUN10075 
prokMSA_id:18889 clone GL182.12 
prokMSA_id:20575 clone GL182.13 
prokMSA_id:22089 Stenotrophomonas sp. clone KL-59-7-5 
prokMSA_id:22707 gamma clone BIgi7
prokMSA_id:22966 beta clone KL-15-2-16 
prokMSA_id:23220 Stenotrophomonas maltophilia strain e-a22
prokMSA_id:27006 Xanthomonas sp. oral clone AY088 AF385546
prokMSA_id:29468 Xanthomonas sp. 36A 
prokMSA_id:31789 Pseudoxanthomonas taiwanensis strain CB-225 
prokMSA_id:34396 Stenotrophomonas maltophilia isolate VUN10035 
prokMSA_id:36460 clone GL178.11 
prokMSA_id:38163 Stenotrophomonas acidaminiphila AF273079
prokMSA_id:38863 clone GL178.2 
prokMSA_id:38887 Stenotrophomonas maltophilia 
prokMSA_id:39016 Gamma S-Nnd-23A AB074736
prokMSA_id:39908 clone GL184.10 
prokMSA_id:40651 Stenotrophomonas sp. LMG 19833 strain LMG 19833 AJ300772
prokMSA_id:41363 beta clone KL-59-7-1 
prokMSA_id:43081 Gamma S-A2-11 AB074713
prokMSA_id:43218 Stenotrophomonas maltophilia strain c5
prokMSA_id:43406 Stenotrophomonas acidaminiphila AF273080
prokMSA_id:43441 Blackwater bioreactor BW3 
prokMSA_id:43546 Stenotrophomonas maltophilia strain c6
prokMSA_id:45132 clone GL182.22 
prokMSA_id:45466 clone GL184.24 
prokMSA_id:45548 Stenotrophomonas maltophilia strain e-p19
prokMSA_id:46966 Stenotrophomonas maltophilia strain e-a23
prokMSA_id:47527 Stenotrophomonas maltophilia clone IrT-JG14-28
prokMSA_id:48518 Pseudoxanthomonas sp. M1-7 
prokMSA_id:48694 Pseudoxanthomonas sp. M1-3 
prokMSA_id:49109 clone GL184.21 
prokMSA_id:49849 Rape rhizosphere tsb011 
prokMSA_id:50487 Stenotrophomonas maltophilia strain c20
prokMSA_id:50679 AT425_EubD3 
prokMSA_id:51923 Stenotrophomonas maltophilia SB5 AY050496
prokMSA_id:52247 Stenotrophomonas maltophilia strain e-a1
prokMSA_id:52510 Stenotrophomonas sp. clone KL-15-2-22 AF408330
prokMSA_id:53196 clone GL184.31 
prokMSA_id:55295 gamma clone CLi132 
prokMSA_id:55391 Xanthomonas campestris pv. campestris str. ATCC 33913 sectio
prokMSA_id:57805 SG-3 complete 
prokMSA_id:59334 clone HP1B89 
prokMSA_id:59558 Xanthomonas axonopodis pv. allii 
prokMSA_id:59922 gamma clone ccs2170 
prokMSA_id:60353 clone Caf5 
prokMSA_id:60387 Xanthomonas group LA37 
prokMSA_id:61805 gamma clone CLs90 
prokMSA_id:61818 gamma clone CLs71 
prokMSA_id:61900 Xanthomonas-like sp. V4.BO.41 
prokMSA_id:62418 gamma clone FTL14 
prokMSA_id:62420 gamma clone FTL204 
prokMSA_id:64373 Xanthomonas axonopodis pv. citri str. 306 complete genome NC
prokMSA_id:64761 gamma clone Poland-16-QC AJ319565
prokMSA_id:65384 Stenotrophomonas maltophilia isolate SaO5lg 
prokMSA_id:65388 Stenotrophomonas maltophilia isolate SaO5sm 
prokMSA_id:65525 Xanthomonas campestris pv. campestris str. ATCC 33913 comple
prokMSA_id:66133 Xanthomonas axonopodis pv. citri str. 306 section 460 of 469
prokMSA_id:66134 Xanthomonas axonopodis pv. citri str. 306 section 417 of 469
prokMSA_id:66211 Xanthomonas campestris pv. campestris str. ATCC 33913 sectio
prokMSA_id:68652 clone KRA30-21 
prokMSA_id:68800 Xanthomonas axonopodis pv. citri strain MA ; intergenic spac
prokMSA_id:68801 Xanthomonas axonopodis pv. citri strain Lw ; intergenic spac
prokMSA_id:68803 Xanthomonas axonopodis pv. aurantifolii strain X341 ; interg
prokMSA_id:68804 Xanthomonas axonopodis pv. aurantifolii strain X84 ; interge
prokMSA_id:70550 mle1-45 
prokMSA_id:70857 Stenotrophomonas maltophilia isolate VUN10003 
prokMSA_id:71314 Stenotrophomonas maltophilia isolate ON2
prokMSA_id:71585 Stenotrophomonas maltophilia isolate VUN10002 
prokMSA_id:72795 Pseudoxanthomonas taiwanensis 
prokMSA_id:73182 Xanthomonas campestris 
prokMSA_id:73868 synthetic wastewater tmbr11-3 complete 
prokMSA_id:74268 Nitrogen-fixing MAGDE3 
prokMSA_id:74521 Stenotrophomonas maltophilia strain e-p13
prokMSA_id:74547 Stenotrophomonas sp
prokMSA_id:76525 Thermomonas brevis strain LMG 21746T
prokMSA_id:77719 gamma clone:APe9_10
prokMSA_id:78291 gamma clone:APe4_53
prokMSA_id:78802 Stenotrophomonas sp. DW100 isolate DW100
prokMSA_id:79389 Xanthomonas axonopodis complete strain:S11
prokMSA_id:81159 Stenotrophomonas maltophilia clone 15 
prokMSA_id:82333 Stenotrophomonas maltophilia clone 1-24 
prokMSA_id:83056 Xanthomonas translucens pv. graminis ; -23S intergenic space
prokMSA_id:85823 Xanthomonas translucens pv. poae ; intergenic spacer complet
prokMSA_id:86511 'Smarlab BioMol-2301083' 
prokMSA_id:86987 Xanthomonas axonopodis pv. vesicatoria strain CNPH411 and -2
prokMSA_id:87040 Xanthomonas vesicatoria strain CNPH345 and -23S intergenic s
prokMSA_id:87180 Xanthomonas gardneri strain CNPH467 and -23S intergenic spac
prokMSA_id:87353 Xanthomonas gardneri strain CNPH496 and -23S intergenic spac
prokMSA_id:91305 clone LWSR-59 AY345544
prokMSA_id:93887 gamma clone KCM-B-65 AJ581600
2.28.3.8.5.8681 OTU 1 seq
prokMSA_id:34452 Gram negative W5P-1 
2.28.3.8.5.9150 OTU 1 seq
prokMSA_id:7805 Stenotrophomonas QSSC1-10 str. QSSC1-10
2.28.3.8.5.9579 OTU 1 seq
prokMSA_id:44870 gamma clone BIsiii14
2.28.3.8.6 XYL.FASTIDIOSA_SUBGROUP 40 seqs
2.28.3.8.6.9569 OTU 40 seqs
prokMSA_id:7843 Xylella fastidiosa str. PWT-100 ATCC 35880. M26601
prokMSA_id:7844 Xylella fastidiosa str. PCE-FG ATCC 35881
prokMSA_id:7845 Xylella fastidiosa str. r116v11
prokMSA_id:7846 Xylella fastidiosa str. PD28-5
prokMSA_id:7847 Xylella fastidiosa str. CVC93-2
prokMSA_id:7848 Xylella fastidiosa str. Mul-2
prokMSA_id:7849 Xylella fastidiosa str. OSL92-3. AF159577
prokMSA_id:7850 Xylella fastidiosa str. PWT-22 ATCC 35878
prokMSA_id:7851 Xylella fastidiosa str. PLS2-9
prokMSA_id:7852 Xylella fastidiosa str. PP4-5
prokMSA_id:7853 str. PCE-FF ATCC 35879
prokMSA_id:19013 Xylella fastidiosa AF224734
prokMSA_id:19739 Xylella fastidiosa isolate plant#5 CVC AF224736
prokMSA_id:20550 Xylella fastidiosa strain CO.01 AF203390
prokMSA_id:21170 Xylella fastidiosa strain PL.788 
prokMSA_id:21608 Xylella fastidiosa strain GR.8935 AF203391
prokMSA_id:25098 Xylella fastidiosa strain PE.PLS 
prokMSA_id:27520 Xylella fastidiosa strain ATCC 35874 
prokMSA_id:30732 Xylella fastidiosa 9a5c section 7 of 229 of the complete gen
prokMSA_id:40772 Xylella fastidiosa isolate MUL1 AF224740
prokMSA_id:50284 Xylella fastidiosa 9a5c complete genome NC_002488
prokMSA_id:50520 Xylella fastidiosa strain CI.52 AF203389
prokMSA_id:50654 Xylella fastidiosa isolate Found 4 AF224737
prokMSA_id:51235 Xylella fastidiosa 9a5c section 16 of 229 of the complete ge
prokMSA_id:51545 Xylella fastidiosa strain ATCC 35873 AF224738
prokMSA_id:51876 Xylella fastidiosa 9a5c complete genome AE003849
prokMSA_id:56224 Xylella fastidiosa isolate PLM G83 
prokMSA_id:56414 Xylella fastidiosa isolate P3 AF536769
prokMSA_id:59937 Xylella fastidiosa isolate ALS-BC 
prokMSA_id:59938 Xylella fastidiosa isolate CRS2 
prokMSA_id:59939 Xylella fastidiosa isolate CM1 
prokMSA_id:59940 Xylella fastidiosa isolate SL1 AF536766
prokMSA_id:59941 Xylella fastidiosa isolate B14 
prokMSA_id:59942 Xylella fastidiosa isolate ELM-1 
prokMSA_id:59943 Xylella fastidiosa isolate MUL-3 
prokMSA_id:59944 Xylella fastidiosa isolate RGW-R 
prokMSA_id:59945 Xylella fastidiosa isolate Temecula 
prokMSA_id:74745 Xylella fastidiosa isolate Cafe 20 AF224739
prokMSA_id:79259 Xylella fastidiosa Temecula1 section 1 of 9 of the complete 
prokMSA_id:79335 Xylella fastidiosa Temecula1 complete genome NC_004556
2.28.3.8.7 XAN.CAMPESTRIS_SUBGROUP 31 seqs
2.28.3.8.7.8297 OTU 1 seq
prokMSA_id:18867 sp. Lake Natron isolate 97NT4
2.28.3.8.7.8440 OTU 3 seqs
prokMSA_id:7873 str. BrG3
prokMSA_id:75052 Thermomonas fusca strain LMG 21736 AJ519985
prokMSA_id:77152 Thermomonas fusca strain LMG 21737T AJ519986
2.28.3.8.7.8453 OTU 1 seq
prokMSA_id:7877 Pseudoxanthomonas broegbernensis str. B1616/1
2.28.3.8.7.8538 OTU 2 seqs
prokMSA_id:7854 Xanthomonas campestris str. XC53
prokMSA_id:7870 Xanthomonas campestris str. XC53
2.28.3.8.7.8542 OTU 1 seq
prokMSA_id:73958 clone SBR2076
2.28.3.8.7.8563 OTU 4 seqs
prokMSA_id:7875 str. 12-3
prokMSA_id:41720 Stenotrophomonas minatitlanensis 
prokMSA_id:62235 Pseudoxanthomonas sp. UR374_02 
prokMSA_id:66929 clone SHA-39
2.28.3.8.7.8573 OTU 1 seq
prokMSA_id:27216 gamma clone BIrii42
2.28.3.8.7.8612 OTU 1 seq
prokMSA_id:44682 Rhizosphere soil clone RSC-II-42 
2.28.3.8.7.8616 OTU 1 seq
prokMSA_id:71744 clone TAF-A205 E49 
2.28.3.8.7.8622 OTU 1 seq
prokMSA_id:64660 Xanthomonas sp. clone burs_22 
2.28.3.8.7.8674 OTU 1 seq
prokMSA_id:7881 clone SRang1.33
2.28.3.8.7.8682 OTU 1 seq
prokMSA_id:7885 Pseudomonas boreopolis ATCC 33662
2.28.3.8.7.8680 OTU 1 seq
prokMSA_id:7884 str. DY01
2.28.3.8.7.9093 OTU 1 seq
prokMSA_id:62951 clone LPU81 
2.28.3.8.7.9270 OTU 9 seqs
prokMSA_id:7899 Stenotrophomonas maltophilia LMG 10857
prokMSA_id:7900 Stenotrophomonas maltophilia str. HK40
prokMSA_id:34542 Stenotrophomonas maltophilia strain e-p10
prokMSA_id:38820 Stenotrophomonas maltophilia strain e-p14
prokMSA_id:52297 Stenotrophomonas maltophilia strain e-p17
prokMSA_id:57539 Stenotrophomonas maltophilia strain LE/61
prokMSA_id:61947 Stentrophomonas-like sp. V4.BP.15 
prokMSA_id:64287 Stenotrophomonas maltophilia strain LMG 20578 
prokMSA_id:68651 clone KRA30-39 
2.28.3.8.7.9286 OTU 1 seq
prokMSA_id:7859 Stenotrophomonas maltophilia LMG 11104
2.28.3.8.7.9433 OTU 1 seq
prokMSA_id:43798 Stenotrophomonas sp. S8 
2.28.3.9 LEGIONELLA_GROUP 127 seqs
2.28.3.9.1 LEGIONELLA_SUBGROUP 91 seqs
2.28.3.9.1.1 FLU.DUMOFFII_SUBGROUP 4 seqs
2.28.3.9.1.1.9342 OTU 1 seq
prokMSA_id:45405 Crater Lake CL120-7 
2.28.3.9.1.1.9612 OTU 1 seq
prokMSA_id:7906 Fluoribacter dumoffii str. NY-23 ATCC 33279
2.28.3.9.1.1.9616 OTU 1 seq
prokMSA_id:7907 Fluoribacter dumoffii NCTC 11370
2.28.3.9.1.1.9621 OTU 1 seq
prokMSA_id:7908 Legionella sp. str. LLAP8
2.28.3.9.1.2 LEG.WADSWORTHII_SUBGROUP 12 seqs
2.28.3.9.1.2.8181 OTU 1 seq
prokMSA_id:7911 Fluoribacter gormanii NCTC 11401
2.28.3.9.1.2.8184 OTU 1 seq
prokMSA_id:7912 Legionella wadsworthii NCTC 11532
2.28.3.9.1.2.8190 OTU 1 seq
prokMSA_id:7915 Legionella cherrii
2.28.3.9.1.2.8220 OTU 8 seqs
prokMSA_id:7913 Legionella wadsworthii ATCC 33877
prokMSA_id:7914 Legionella cherrii ATCC 35252
prokMSA_id:7921 Legionella anisa ATCC 35292
prokMSA_id:7928 Legionella sainthelensi ATCC 35248
prokMSA_id:7933 Legionella cincinnatiensis ATCC 43753
prokMSA_id:7934 Legionella steigerwaltii ATCC 35302
prokMSA_id:7960 Legionella pneumophila subsp. pneumophila str. Chicago 2 ATC
prokMSA_id:8007 Legionella brunensis
2.28.3.9.1.2.8865 OTU 1 seq
prokMSA_id:80375 clone ARKCH2Br2-23 
2.28.3.9.1.3 LEG.PARISIENSIS_SUBGROUP 2 seqs
2.28.3.9.1.3.8193 OTU 1 seq
prokMSA_id:7916 Legionella parisiensis NCTC 11983
2.28.3.9.1.3.8199 OTU 1 seq
prokMSA_id:7917 Legionella parisiensis str. Lyon96010011; FLP2 ATCC 700174
2.28.3.9.1.4 LEG.ANISA_SUBGROUP 1 seq
2.28.3.9.1.4.8235 OTU 1 seq
prokMSA_id:7920 Legionella FM-1-679 str. FM-1-679
2.28.3.9.1.5 FLU.BOZEMANAE_SUBGROUP 2 seqs
2.28.3.9.1.5.9244 OTU 2 seqs
prokMSA_id:7922 Fluoribacter bozemanae str. Mi-15 sgp1 NCTC 11369
prokMSA_id:7924 Fluoribacter bozemanae str. spg2 NCTC 11975
2.28.3.9.1.6 LEG.CINCINNATIENSIS_SUBGROUP 5 seqs
2.28.3.9.1.6.8252 OTU 1 seq
prokMSA_id:7932 Legionella cincinnatiensis NCTC 12438
2.28.3.9.1.6.8259 OTU 1 seq
prokMSA_id:7927 Legionella sainthelensi NCTC 11988
2.28.3.9.1.6.8274 OTU 1 seq
prokMSA_id:7929 Legionella gratiana NCTC 12788
2.28.3.9.1.6.8292 OTU 1 seq
prokMSA_id:7931 Legionella santicrucis NCTC 11999
2.28.3.9.1.6.8962 OTU 1 seq
prokMSA_id:60646 gamma clone AEGEAN_234 
2.28.3.9.1.7 LEG.LYTICA_SUBGROUP 28 seqs
2.28.3.9.1.7.8307 OTU 1 seq
prokMSA_id:7935 Legionella steigerwaltii NCTC 11991
2.28.3.9.1.7.8372 OTU 1 seq
prokMSA_id:7944 clone WCHA1-85
2.28.3.9.1.7.8373 OTU 1 seq
prokMSA_id:7946 Legionella sp. str. LLAP10
2.28.3.9.1.7.8836 OTU 23 seqs
prokMSA_id:7918 Legionella anisa NCTC 11974
prokMSA_id:7937 Legionella lytica str. LLAP-3 PCM 2298
prokMSA_id:7938 Legionella lytica str. LLAP-3 PCM 2298
prokMSA_id:7939 Legionella sp. str. LLAP12. X97366
prokMSA_id:7940 Legionella lytica str. LLAP-3 PCM 2298
prokMSA_id:7941 unnamed organism
prokMSA_id:7942 unnamed organism
prokMSA_id:7945 Legionella lyticum str. LLAP3
prokMSA_id:7947 Legionella sp. str. LLAP11
prokMSA_id:7948 Legionella sp. str. LLAP2
prokMSA_id:7949 Legionella sp. str. LLAP4
prokMSA_id:7950 Legionella sp. str. LLAP6
prokMSA_id:7951 Legionella sp. str. LLAP7
prokMSA_id:7952 Legionella sp. str. LLAP9
prokMSA_id:7953 Legionella sp. str. LLAP-3
prokMSA_id:7962 Legionella pneumophila subsp. pascullei str. U8W ATCC 33737
prokMSA_id:8001 Legionella rubrilucens NCTC 11987
prokMSA_id:8004 Legionella erythra str. SE-32A-C8 ATCC 35303
prokMSA_id:51847 Legionella pneumophila strain E5C1 
prokMSA_id:58869 Legionella busanensis strain K9970 
prokMSA_id:62834 Legionella pneumophila serogroup 6 avirulent mutant
prokMSA_id:66336 Legionella sp. strain LLAP12
prokMSA_id:73593 Legionella sp. strain LLAP4 X97357
2.28.3.9.1.7.9038 OTU 1 seq
prokMSA_id:21751 clone GOUTA10 
2.28.3.9.1.7.9253 OTU 1 seq
prokMSA_id:52016 clone GOUTB2 
2.28.3.9.1.8 LEG.SHAKESPEAREI_SUBGROUP 4 seqs
2.28.3.9.1.8.8417 OTU 1 seq
prokMSA_id:7954 Legionella moravica NCTC 12239
2.28.3.9.1.8.8444 OTU 1 seq
prokMSA_id:7958 Legionella quateirensis NCTC 12370
2.28.3.9.1.8.8901 OTU 1 seq
prokMSA_id:7957 str. LLAP-14
2.28.3.9.1.8.8899 OTU 1 seq
prokMSA_id:7955 Legionella worsleiensis NCTC 13277
2.28.3.9.1.9 LEG.PNEUMOPHILA_SUBGROUP 3 seqs
2.28.3.9.1.9.8516 OTU 1 seq
prokMSA_id:7963 Legionella waltersii str. 2074-AUS-E ATCC 51914
2.28.3.9.1.9.8698 OTU 1 seq
prokMSA_id:73127 clone TAF-B96 
2.28.3.9.1.9.8937 OTU 1 seq
prokMSA_id:7961 Legionella gresilensis str. Greoux 11 D13 ATCC 700509
2.28.3.9.1.11 LEG.ISRAELENSIS_SUBGROUP 12 seqs
2.28.3.9.1.11.8544 OTU 1 seq
prokMSA_id:7972 Legionella fairfieldensis NCTC 12488
2.28.3.9.1.11.8547 OTU 1 seq
prokMSA_id:7973 Legionella lansingensis NCTC 12830
2.28.3.9.1.11.8550 OTU 1 seq
prokMSA_id:7974 Legionella birminghamensis NCTC 12437
2.28.3.9.1.11.9079 OTU 1 seq
prokMSA_id:7975 clone WCHA1-76
2.28.3.9.1.11.9080 OTU 1 seq
prokMSA_id:7976 Legionella quinlivanii NCTC 12433
2.28.3.9.1.11.9084 OTU 1 seq
prokMSA_id:7977 Legionella geestiana NCTC 12373
2.28.3.9.1.11.9085 OTU 1 seq
prokMSA_id:7978 Legionella adelaidensis NCTC 12735
2.28.3.9.1.11.9113 OTU 1 seq
prokMSA_id:7981 Legionella oakridgensis NCTC 11531
2.28.3.9.1.11.9112 OTU 1 seq
prokMSA_id:7980 Legionella oakridgensis ATCC 33761
2.28.3.9.1.11.9115 OTU 1 seq
prokMSA_id:7982 Legionella nautarum NCTC 12375
2.28.3.9.1.11.9117 OTU 1 seq
prokMSA_id:7983 Legionella israelensis ATCC 43119
2.28.3.9.1.11.9146 OTU 1 seq
prokMSA_id:7984 Legionella israelensis NCTC 12010
2.28.3.9.1.13 TAT.MICDADEI_SUBGROUP 11 seqs
2.28.3.9.1.13.8337 OTU 4 seqs
prokMSA_id:7991 Tatlockia maceachernii str. PX-1-G2-E2 NCTC 11982
prokMSA_id:7993 Tatlockia maceachernii str. PX-1-G2-E2 NCTC 11982
prokMSA_id:48785 Legionella maceachernii 
prokMSA_id:52462 Legionella micdadei AF227162
2.28.3.9.1.13.8457 OTU 1 seq
prokMSA_id:47939 gamma CHAB-XI-27 5' 
2.28.3.9.1.13.9042 OTU 2 seqs
prokMSA_id:7995 str. LLAP 1. U64034
prokMSA_id:7996 Legionella sp. str. LLAP1
2.28.3.9.1.13.9198 OTU 2 seqs
prokMSA_id:71246 KF-JG30-B15 AJ295651
prokMSA_id:78512 gamma clone JG30a-KF-94
2.28.3.9.1.13.9617 OTU 2 seqs
prokMSA_id:7997 Legionella feeleii str. WO-44C ATCC 35072
prokMSA_id:7998 Legionella feeleii str. 691-WI-H ATCC 35849
2.28.3.9.1.14 LEG.ERYTHRA_SUBGROUP 1 seq
2.28.3.9.1.14.9099 OTU 1 seq
prokMSA_id:8002 Legionella rubrilucens ATCC 35304
2.28.3.9.1.15 LEG.BRUNENSIS_SUBGROUP 1 seq
2.28.3.9.1.15.9104 OTU 1 seq
prokMSA_id:8008 Legionella beliardensis str. Montbeliard A1
2.28.3.9.1.16 LEG.JAMESTOWNIENSIS_SUBGROUP 3 seqs
2.28.3.9.1.16.9136 OTU 1 seq
prokMSA_id:8010 Legionella jamestowniensis ATCC 35298
2.28.3.9.1.16.9140 OTU 1 seq
prokMSA_id:8012 Legionella jamestowniensis NCTC 11981
2.28.3.9.1.16.9139 OTU 1 seq
prokMSA_id:8011 str. NKB5
2.28.3.9.1.17 LEG.JORDANIS_SUBGROUP 2 seqs
2.28.3.9.1.17.8168 OTU 1 seq
prokMSA_id:8013 Legionella jordanis NCTC 11533
2.28.3.9.1.17.9168 OTU 1 seq
prokMSA_id:8014 Legionella jordanis ATCC 33623
2.28.3.9.2 COX.BURNETII_SUBGROUP 36 seqs
2.28.3.9.2.8198 OTU 1 seq
prokMSA_id:50747 Endosymbiont of Folsomia candida 
2.28.3.9.2.8256 OTU 1 seq
prokMSA_id:46260 Ornithodoros moubata symbiote A 
2.28.3.9.2.8298 OTU 1 seq
prokMSA_id:8028 Rickettsiella grylli
2.28.3.9.2.8296 OTU 1 seq
prokMSA_id:8026 str. JTB256
2.28.3.9.2.8301 OTU 1 seq
prokMSA_id:8029 clone Sva0714
2.28.3.9.2.8378 OTU 1 seq
prokMSA_id:74504 gamma KTc0924 
2.28.3.9.2.8438 OTU 1 seq
prokMSA_id:74455 gamma clone R14 
2.28.3.9.2.8459 OTU 1 seq
prokMSA_id:30360 gamma KEppiB7 
2.28.3.9.2.8568 OTU 1 seq
prokMSA_id:16391 Rickettsiella sp. GSU 
2.28.3.9.2.8657 OTU 1 seq
prokMSA_id:51432 gamma MERTZ_21CM_277 
2.28.3.9.2.8663 OTU 10 seqs
prokMSA_id:19290 Legionella sp. IUB43 
prokMSA_id:19657 Legionella sp. IA55 
prokMSA_id:22506 Legionella sp. OA32 
prokMSA_id:24832 Legionella sp. OUA34 
prokMSA_id:33240 Legionella sp. IUA36 
prokMSA_id:41926 Legionella sp. OI36 
prokMSA_id:45382 Legionella sp. IY2 
prokMSA_id:49165 Legionella sp. II29 
prokMSA_id:49724 Legionella sp. OY6 
prokMSA_id:51890 Legionella sp. OUB41 
2.28.3.9.2.8668 OTU 1 seq
prokMSA_id:48746 gamma MERTZ_2CM_122 
2.28.3.9.2.8771 OTU 10 seqs
prokMSA_id:8018 Coxiella burnetii str. 58T
prokMSA_id:8019 Coxiella burnetii str. 50F. D89796
prokMSA_id:8020 Coxiella burnetii str. Q212. D89797
prokMSA_id:8021 Coxiella burnetii str. VR730. D89798
prokMSA_id:8022 Coxiella burnetii str. 1M. D89799
prokMSA_id:8023 Coxiella burnetii str. 27M. D89800
prokMSA_id:8024 Coxiella burnetii str. Ohio. D89791
prokMSA_id:8025 Coxiella burnetii str. 607. D89792
prokMSA_id:83477 Coxiella burnetii RSA 493 complete genome NC_002971
prokMSA_id:84670 Coxiella burnetii strain RSA 493 section 1 of 7 of the compl
2.28.3.9.2.8969 OTU 1 seq
prokMSA_id:79079 gamma clone JG30-KF-C15
2.28.3.9.2.9076 OTU 1 seq
prokMSA_id:73506 from Cecidotrioza sozanica 
2.28.3.9.2.9171 OTU 1 seq
prokMSA_id:8017 Coxiella sp
2.28.3.9.2.9489 OTU 1 seq
prokMSA_id:45765 clone HTA4 
2.28.3.9.2.9581 OTU 1 seq
prokMSA_id:35529 gamma MERTZ_0CM_353 
2.28.3.10 METHYLOMONAS_GROUP 100 seqs
2.28.3.10.1 ENDOSYMBIONT_OF_HELIOTHIS 1 seq
2.28.3.10.1.8356 OTU 1 seq
prokMSA_id:8030 endosymbiont of Heliothis virescens testis
2.28.3.10.3 MLC.CAPSULATUS_SUBGROUP 18 seqs
2.28.3.10.3.8299 OTU 1 seq
prokMSA_id:40198 gamma M84-D36 clone M84-D36
2.28.3.10.3.8359 OTU 1 seq
prokMSA_id:8035 Methylococcus thermophilus str. IMV-B-3037
2.28.3.10.3.8418 OTU 1 seq
prokMSA_id:40285 Methylococcaceae clone GW70-10-16 
2.28.3.10.3.8427 OTU 1 seq
prokMSA_id:8045 Methylocaldum szegediense str. OR2
2.28.3.10.3.8587 OTU 1 seq
prokMSA_id:55626 clone T5-3 rrn 
2.28.3.10.3.8667 OTU 1 seq
prokMSA_id:8036 Methylococcus capsulatus str. Bath ACM 3302
2.28.3.10.3.8810 OTU 1 seq
prokMSA_id:54364 gamma M90-D37 clone M90-D37
2.28.3.10.3.8980 OTU 1 seq
prokMSA_id:57791 clone SBRL2_19 
2.28.3.10.3.9008 OTU 6 seqs
prokMSA_id:56539 clone SBRQ152 
prokMSA_id:56552 clone SBRQ157 
prokMSA_id:58384 clone SBRQ196 
prokMSA_id:58385 clone SBRQ191 AF361091
prokMSA_id:58386 clone SBRQ185 
prokMSA_id:58387 clone SBRQ171 
2.28.3.10.3.9121 OTU 1 seq
prokMSA_id:21269 isolate BUG-114
2.28.3.10.3.9322 OTU 1 seq
prokMSA_id:8037 Methylococcus capsulatus str. Texas ACM 1292
2.28.3.10.3.9468 OTU 1 seq
prokMSA_id:57801 clone SBRL2_40 
2.28.3.10.3.9572 OTU 1 seq
prokMSA_id:21930 gamma clone 4-25 
2.28.3.10.4 MLM.METHANICA_SUBGROUP 72 seqs
2.28.3.10.4.8187 OTU 1 seq
prokMSA_id:8089 clone BPC036
2.28.3.10.4.8197 OTU 1 seq
prokMSA_id:33884 gamma M90-D1 clone M90-D1
2.28.3.10.4.8219 OTU 1 seq
prokMSA_id:17922 I methanotroph T1-04 
2.28.3.10.4.8232 OTU 1 seq
prokMSA_id:19000 gamma MERTZ_21CM_119 
2.28.3.10.4.8250 OTU 1 seq
prokMSA_id:24860 clone 1605-59 
2.28.3.10.4.8284 OTU 2 seqs
prokMSA_id:8051 str. AML-C10
prokMSA_id:8052 str. AML-D4
2.28.3.10.4.8402 OTU 2 seqs
prokMSA_id:8086 Methylobacter luteus ACM 3304
prokMSA_id:8091 Methylobacter whittenburyi ACM 3309
2.28.3.10.4.8420 OTU 1 seq
prokMSA_id:47633 SY6-106 
2.28.3.10.4.8625 OTU 1 seq
prokMSA_id:29378 gamma CE102 
2.28.3.10.4.8645 OTU 14 seqs
prokMSA_id:8057 Methylomonas scandinavica. AJ131369
prokMSA_id:8060 Methylomicrobium alcaliphilum str. 5z
prokMSA_id:8063 Methylomicrobium NI str. NI
prokMSA_id:8066 Methylomonas methanica
prokMSA_id:8067 Methylomonas LW21 str. LW21
prokMSA_id:8068 Methylomonas LW19 str. LW19
prokMSA_id:8069 Methylomonas LW16 str. LW16
prokMSA_id:8070 Methylomonas LW15 str. LW15
prokMSA_id:8071 Methylomonas LW13 str. LW13
prokMSA_id:8078 Methylomonas sp. str. KSPIII
prokMSA_id:8081 Methylomicrobium agile str. A30 ACM 3308
prokMSA_id:45263 Methylomonas methanica S1 complete 
prokMSA_id:70707 strain AMO 1
prokMSA_id:81028 gamma clone ML513M-26 
2.28.3.10.4.8729 OTU 1 seq
prokMSA_id:48494 gamma clone 8-4 
2.28.3.10.4.8776 OTU 1 seq
prokMSA_id:29708 Marinomonas SIC.163 
2.28.3.10.4.8788 OTU 1 seq
prokMSA_id:20195 gamma MERTZ_2CM_276 
2.28.3.10.4.8821 OTU 7 seqs
prokMSA_id:8097 Methylobacter T20 str. T20
prokMSA_id:8098 Methylobacter psychrophilus str. Z-0021
prokMSA_id:31630 clone LO13.6 
prokMSA_id:40043 Methylobacter luteus NCIMB 11914 complete 
prokMSA_id:41292 gamma clone 8-65 
prokMSA_id:42401 FukuN13 
prokMSA_id:43109 Methylobacter sp. SV96 strain SV96
2.28.3.10.4.8826 OTU 1 seq
prokMSA_id:24674 gamma MERTZ_2CM_211 
2.28.3.10.4.8840 OTU 2 seqs
prokMSA_id:22040 Methylobacter sp. LW12 
prokMSA_id:40125 Methylobacter sp. LW14 
2.28.3.10.4.8893 OTU 2 seqs
prokMSA_id:29983 I methanotroph T1-14 
prokMSA_id:51129 I methanotroph T1-13 
2.28.3.10.4.8913 OTU 1 seq
prokMSA_id:77645 gamma clone Hyd89-87
2.28.3.10.4.8915 OTU 1 seq
prokMSA_id:8050 Methylomicrobium album str. VKM-BG8 ACM 3314
2.28.3.10.4.8919 OTU 2 seqs
prokMSA_id:8084 Methylomonas aurantiaca str. JB103 phenon3 ACM 3406
prokMSA_id:8090 Methylomonas fodinarum str. JB13 phenon2 ACM 3268
2.28.3.10.4.8929 OTU 1 seq
prokMSA_id:8059 Methylomicrobium pelagicum ACM 3505
2.28.3.10.4.8940 OTU 1 seq
prokMSA_id:41887 I methanotroph T1-09 
2.28.3.10.4.8949 OTU 1 seq
prokMSA_id:64552 Caedibacter taeniospiralis 
2.28.3.10.4.9017 OTU 1 seq
prokMSA_id:20538 I methanotroph T1-08 
2.28.3.10.4.9065 OTU 1 seq
prokMSA_id:56096 gamma clone 1-27 
2.28.3.10.4.9070 OTU 1 seq
prokMSA_id:52100 gamma M90-D9 clone M90-D9
2.28.3.10.4.9182 OTU 5 seqs
prokMSA_id:8087 Methylobacter LW1 str. LW1. AF150784
prokMSA_id:8096 Methylobacter BB5.1
prokMSA_id:37065 Methylobacter marinus A45 complete 
prokMSA_id:40524 Methylococcaceae clone GW70-10-42 
prokMSA_id:54307 Methylococcaceae clone GW70-20-8 
2.28.3.10.4.9188 OTU 1 seq
prokMSA_id:8076 unnamed organism
2.28.3.10.4.9269 OTU 1 seq
prokMSA_id:20100 gamma SA51 
2.28.3.10.4.9304 OTU 1 seq
prokMSA_id:47576 SY6-109 
2.28.3.10.4.9311 OTU 1 seq
prokMSA_id:33214 I methanotroph T1-05 
2.28.3.10.4.9313 OTU 1 seq
prokMSA_id:8092 Methylobacter Methylobacter pAMC419
2.28.3.10.4.9314 OTU 1 seq
prokMSA_id:8095 clone RB07
2.28.3.10.4.9415 OTU 1 seq
prokMSA_id:50819 gamma M84-D42 clone M84-D42
2.28.3.10.4.9419 OTU 1 seq
prokMSA_id:34897 gamma MERTZ_2CM_5 
2.28.3.10.4.9438 OTU 1 seq
prokMSA_id:77724 gamma clone Hyd24-01
2.28.3.10.4.9503 OTU 5 seqs
prokMSA_id:8082 Methylomicrobium Methylomicrobium pAMC466
prokMSA_id:8083 Methylomicrobium Methylomicrobium pAMC421
prokMSA_id:31246 I methanotroph R4 AF182499
prokMSA_id:49658 I methanotroph R2 AF182497
prokMSA_id:67240 Methylobacter sp. HG-1 AF495887
2.28.3.10.4.9547 OTU 1 seq
prokMSA_id:45451 gamma M84-D45 clone M84-D45
2.28.3.10.4.9597 OTU 1 seq
prokMSA_id:36761 gamma MERTZ_2CM_121 
2.28.3.10.4.9637 OTU 1 seq
prokMSA_id:42477 gamma MERTZ_0CM_61 
2.28.3.10.5 MBC.LUTEUS_SUBGROUP 9 seqs
2.28.3.10.5.8186 OTU 1 seq
prokMSA_id:8100 symbiont of methanotrophic symbiont of Louisiana Slope musse
2.28.3.10.5.8358 OTU 1 seq
prokMSA_id:22752 Bathymodiolus sp. symbiont I 
2.28.3.10.5.8435 OTU 1 seq
prokMSA_id:50455 Bathymodiolus japonicus methanotrophic gill symbiont 
2.28.3.10.5.8744 OTU 1 seq
prokMSA_id:36844 Methylophaga sp. Loihi-Chm-3 
2.28.3.10.5.8877 OTU 1 seq
prokMSA_id:16413 Bathymodiolus platifrons methanotrophic gill symbiont 
2.28.3.10.5.8963 OTU 3 seqs
prokMSA_id:16464 gamma clone 33-PA121B98 AF469289
prokMSA_id:26347 gamma clone 33-PA129B98 
prokMSA_id:51649 gamma clone CTD47B 
2.28.3.10.5.9318 OTU 1 seq
prokMSA_id:8099 symbiont of mussel methanotrophic gill
2.28.3.11 OCEANOSPIRILLUM_GROUP 261 seqs
2.28.3.11.1 HALOMONAS_SUBGROUP 179 seqs
2.28.3.11.1.1 OSP.JAPONICUM_SUBGROUP 1 seq
2.28.3.11.1.1.8194 OTU 1 seq
prokMSA_id:8109 Oceanospirillum japonicum ATCC 19191
2.28.3.11.1.3 ZYB.PALMAE_SUBGROUP 38 seqs
2.28.3.11.1.3.8233 OTU 1 seq
prokMSA_id:8115 Carnomonas nigrifaciens str. CTCBS1
2.28.3.11.1.3.8247 OTU 1 seq
prokMSA_id:54683 Carsonella ruddii natural-host Spanioneura fonscolombii 23S 
2.28.3.11.1.3.8290 OTU 1 seq
prokMSA_id:19432 Primary endosymbiont of Cecidotrioza sozanica 
2.28.3.11.1.3.8309 OTU 14 seqs
prokMSA_id:8121 symbiont of Bemisia tabaci sweetpotato whitefly. Z11925
prokMSA_id:19222 Primary endosymbiont of Bemisia tabaci clone MEX4 
prokMSA_id:20005 Primary endosymbiont of Bemisia tabaci clone MEX12 
prokMSA_id:28101 Primary endosymbiont of Bemisia tabaci clone AZA 
prokMSA_id:29094 Primary endosymbiont of Bemisia tabaci clone TANZ15 AF400463
prokMSA_id:34503 Primary endosymbiont of Bemisia tabaci clone AUS 
prokMSA_id:36328 Primary endosymbiont of Bemisia tabaci clone UG23 
prokMSA_id:39721 Primary endosymbiont of Bemisia tabaci clone UG39 
prokMSA_id:42418 Primary endosymbiont of Bemisia tabaci clone CAMW15 
prokMSA_id:43103 Primary endosymbiont of Bemisia tabaci clone TANZ18 
prokMSA_id:43537 Primary endosymbiont of Bemisia tabaci clone TANZ3 
prokMSA_id:49640 Primary endosymbiont of Bemisia tabaci clone IND34 
prokMSA_id:73878 Primary endosymbiont of Bemisia argentifolii ; tRNA-Ile comp
prokMSA_id:88180 Candidatus Portiera aleyrodidarum genomic AY268081
2.28.3.11.1.3.8331 OTU 1 seq
prokMSA_id:46892 Primary endosymbiont of Bemisia tabaci clone UG26 
2.28.3.11.1.3.8365 OTU 1 seq
prokMSA_id:54086 Carsonella ruddii natural-host Trioza urticae 23S and genes 
2.28.3.11.1.3.8470 OTU 1 seq
prokMSA_id:53696 Carsonella ruddii natural-host Glycaspis brimblecombei 23S a
2.28.3.11.1.3.8709 OTU 1 seq
prokMSA_id:53577 Carsonella ruddii endosymbiont of Arytaina genistae and 23S 
2.28.3.11.1.3.8841 OTU 1 seq
prokMSA_id:52996 Carsonella ruddii natural-host Panisopelma fulvescens 23S an
2.28.3.11.1.3.8855 OTU 2 seqs
prokMSA_id:27044 Primary endosymbiont of Psylla ?floccosa 
prokMSA_id:53049 Carsonella ruddii natural-host Psylla sp. 23S and genes 
2.28.3.11.1.3.8895 OTU 1 seq
prokMSA_id:54984 Carsonella ruddii natural-host Heteropsylla texana 23S and g
2.28.3.11.1.3.8979 OTU 1 seq
prokMSA_id:54580 Carsonella ruddii natural-host Psylla buxi 23S and genes 
2.28.3.11.1.3.8994 OTU 1 seq
prokMSA_id:25150 Primary endosymbiont of Trialeurodes abutilonea 
2.28.3.11.1.3.9004 OTU 1 seq
prokMSA_id:8120 unnamed organism
2.28.3.11.1.3.9012 OTU 2 seqs
prokMSA_id:46529 Mycetocyte endosymbiont of Diaphorina citri 
prokMSA_id:54539 Carsonella ruddii natural-host Diaphorina citri 23S and gene
2.28.3.11.1.3.9176 OTU 1 seq
prokMSA_id:54499 Carsonella ruddii and 23S genes 
2.28.3.11.1.3.9463 OTU 1 seq
prokMSA_id:51913 Primary endosymbiont of Aleurodicus dugesii 
2.28.3.11.1.3.9513 OTU 2 seqs
prokMSA_id:22092 Primary endosymbiont of Paratrioza cockerelli 
prokMSA_id:68911 Carsonella ruddii natural-host cockerelli tryptophanyl-tRNA 
2.28.3.11.1.3.9535 OTU 1 seq
prokMSA_id:54310 Carsonella ruddii natural-host Cacopsylla peregrina 23S and 
2.28.3.11.1.3.9558 OTU 1 seq
prokMSA_id:69260 Carsonella ruddii natural-host Russelliana intermedia 23S an
2.28.3.11.1.3.9631 OTU 2 seqs
prokMSA_id:54585 Carsonella ruddii country Chile 23S and genes 
prokMSA_id:68912 Carsonella ruddii country USA tryptophanyl-tRNA synthetase t
2.28.3.11.1.5 CH.MARISMORTUI_SUBGROUP 13 seqs
2.28.3.11.1.5.8317 OTU 3 seqs
prokMSA_id:8126 Pseudomonas beijerinckii ATCC 19372
prokMSA_id:43878 Chromohalobacter canadensis 
prokMSA_id:46277 Chromohalobacter canadensis strain ATCC 43984 T
2.28.3.11.1.5.8514 OTU 9 seqs
prokMSA_id:8127 Chromohalobacter marismortui str. A-100
prokMSA_id:8128 Chromohalobacter marismortui str. A-492
prokMSA_id:8129 Chromohalobacter marismortui str. T1093
prokMSA_id:8130 Chromohalobacter marismortui str. A-65
prokMSA_id:35612 Halomonas elongata strain ATCC 33174
prokMSA_id:37191 Chromohalobacter israelensis strain ATCC 43985 T
prokMSA_id:43545 Chromohalobacter israelensis 
prokMSA_id:48786 Halomonas elongata strain DSM 3043
prokMSA_id:52988 Halophilic TAG C11 
2.28.3.11.1.5.9421 OTU 1 seq
prokMSA_id:45184 antarctic soil clone bh4.45 
2.28.3.11.1.6 HLM.DESIDERATA_SUBGROUP 22 seqs
2.28.3.11.1.6.8334 OTU 1 seq
prokMSA_id:8133 Halomonas campusalis
2.28.3.11.1.6.9255 OTU 12 seqs
prokMSA_id:22868 Halomonas marina strain DSM 4741 AJ306890
prokMSA_id:31691 Halomonas sp. KMM 3550 AF316143
prokMSA_id:34862 Halomonas sp. Msw1.1556b complete AF212205
prokMSA_id:80433 Marine P_wp0224 
prokMSA_id:92002 Halomonas sp. WHOI JT-29 AY349462
prokMSA_id:93482 Halomonas sp. wp38 isolate wp38 AJ551113
prokMSA_id:93560 Halomonas sp. wp39 isolate wp39 AJ551114
prokMSA_id:93721 Halomonas sp. mp1 isolate mp1 AJ551115
prokMSA_id:93868 Halomonas sp. mp6 isolate mp6 AJ551120
prokMSA_id:93962 Halomonas sp. wp31 isolate wp31 AJ551108
prokMSA_id:94081 Halomonas sp. wp29 isolate wp29 AJ551106
prokMSA_id:94104 Halomonas sp. wp34 isolate wp34 AJ551111
2.28.3.11.1.6.9446 OTU 2 seqs
prokMSA_id:26569 Halomonas sp. IB-I6 strain IB-I6 AJ302088
prokMSA_id:46054 Deleya sp. ASE1315 
2.28.3.11.1.6.9526 OTU 2 seqs
prokMSA_id:38608 Halomonas marisflava AF251143
prokMSA_id:60375 Halomonadaceae PH17 
2.28.3.11.1.6.9530 OTU 5 seqs
prokMSA_id:8132 Halomonas MBIC2031 str. MBIC2031. AB025599
prokMSA_id:8135 Haererehalobacter ostenderis. U78786
prokMSA_id:69979 Pseudomonas sp. Fsur-1 AB055789
prokMSA_id:82029 Halomonas sp. 3012dK AY196981
prokMSA_id:82752 Halomonas sp. clone ABBB-82 
2.28.3.11.1.7 HLM.SUBGLACIESCOLA_SUBGROUP 88 seqs
2.28.3.11.1.7.8242 OTU 1 seq
prokMSA_id:38116 Halomonas subglaciescola strain DSM 4683
2.28.3.11.1.7.8429 OTU 26 seqs
prokMSA_id:8149 Halomonas aquamarina str. DS40M3
prokMSA_id:8150 Halomonas MBIC1142 str. MBIC1142
prokMSA_id:8151 str. HTB143
prokMSA_id:8152 str. HTB069
prokMSA_id:8153 str. HTB123
prokMSA_id:8154 str. HTB111
prokMSA_id:8156 str. HTB138
prokMSA_id:8157 str. HTB122
prokMSA_id:18077 Halomonas sp. Althf1.1723a complete 
prokMSA_id:19859 Halomonas aquamarina strain DSM 30161
prokMSA_id:25345 Halomonas sp. Eplume2.B1 complete 
prokMSA_id:30624 Halomonas meridiana strain DSM 5425
prokMSA_id:33775 Slope strain DII1a 
prokMSA_id:35815 Halomonas sp. Ssw1.1818c complete 
prokMSA_id:42510 Halomonas sp. Slthf1.1874b complete 
prokMSA_id:42563 Halomonas sp. NIBH P1H13 
prokMSA_id:42780 Halomonas sp. NIBH P1H25 
prokMSA_id:44149 Halomonas sp. NIBH P1H14 
prokMSA_id:54333 Halomonas sp. NIBH P1H22 
prokMSA_id:71069 Halomonas sp. V4.MS.05 
prokMSA_id:75016 Halomonas sp. HY-101 isolate HY-101
prokMSA_id:75806 Halomonas sp. HY-51m isolate HY-51m
prokMSA_id:76518 Halomonas sp. HY-23k isolate HY-23k
prokMSA_id:80894 Halomonas sp. P_wp0221 
prokMSA_id:84393 Marine arctic deep-sea FB8 
prokMSA_id:84649 Marine arctic deep-sea HF13 
2.28.3.11.1.7.8562 OTU 1 seq
prokMSA_id:61014 Halomonas sp. TNB I20 
2.28.3.11.1.7.8576 OTU 9 seqs
prokMSA_id:61004 Halomonas sp. SYM P12 
prokMSA_id:61005 Halomonas sp. NT N100 
prokMSA_id:61006 Halomonas sp. NT N97 
prokMSA_id:61010 Halomonas sp. SMT L4 
prokMSA_id:76319 Halomonas sp. Ko502 
prokMSA_id:76753 Halomonas sp. Ko501 
prokMSA_id:84290 Halomonas sp. E23 
prokMSA_id:85461 Halomonas sp. E21 
prokMSA_id:86698 Halomonas sp. R21 
2.28.3.11.1.7.8598 OTU 30 seqs
prokMSA_id:8131 Halomonas desiderata str. FB2 DSM 9502 . X92417
prokMSA_id:8147 Halomonas ML-028 str. ML-028
prokMSA_id:8148 Halomonas meridiana ACAM 246 . M93356
prokMSA_id:17793 Halomonas sp. TAG C4 
prokMSA_id:22626 Arctic seawater R7079 
prokMSA_id:22659 Halomonas sp. EF43 AF280796
prokMSA_id:22745 Halomonas sp. BYS-1 AY062217
prokMSA_id:23983 Halomonas sp. Splume4.1864c complete AF212216
prokMSA_id:24039 Halomonas sp. Sbplume1.1840c complete AF212214
prokMSA_id:30146 Halomonas sp. NIBH P1H8 
prokMSA_id:31671 Arctic seawater R7103 
prokMSA_id:34303 sp. Lake Bogoria isolate WB4 X92145
prokMSA_id:35481 sp. Lake Nakuru isolate 19N1
prokMSA_id:36640 Halomonas sp. Slthf2.1878c complete AF212218
prokMSA_id:40862 Halomonas venusta strain DSM 4743 AJ306894
prokMSA_id:51148 sp. Lake Magadi isolate 21M1
prokMSA_id:52762 clone p-860-a5 
prokMSA_id:63144 Halomonas sp. YIM-kkny11 
prokMSA_id:70966 Halomonas sp. Dsur-1 
prokMSA_id:71016 Halomonas variabilis 
prokMSA_id:71534 gamma strain OS-1488 AJ311970
prokMSA_id:75036 Halomonas variabilis isolate HY-B3
prokMSA_id:75357 Halomonas sp. HY-B2 isolate HY-B2
prokMSA_id:75482 Halomonas sp. HY-23g isolate HY-23g AJ294344
prokMSA_id:75638 Halomonas variabilis isolate HY-51g
prokMSA_id:81690 Halomonas variabilis strain HTG7 AY204638
prokMSA_id:81790 Halomonas frigidi strain DD 39
prokMSA_id:91936 Halomonas sp. EF11 AY332559
prokMSA_id:93527 Halomonas sp. es11 isolate es11 AJ551130
prokMSA_id:96155 Halomonas sp. DY8-1 AY383044
2.28.3.11.1.7.8854 OTU 14 seqs
prokMSA_id:8143 Halomonas variabilis str. SW04
prokMSA_id:8144 Halomonas variabilis str. SW32
prokMSA_id:8145 Halomonas variabilis str. SW48
prokMSA_id:33823 Halomonas variabilis strain DSM 3051
prokMSA_id:35278 Halomonas sp. Eplume3.D3 complete 
prokMSA_id:40996 Halomonas sp. Eplume1.A1 complete 
prokMSA_id:61007 Halomonas sp. ARD M36 
prokMSA_id:61008 Halomonas sp. ARD M34 
prokMSA_id:61013 Halomonas sp. TNB I24 
prokMSA_id:75905 Halomonas variabilis isolate HY-61
prokMSA_id:81833 Halomonas boliviensis strain LC2 
prokMSA_id:82157 Halomonas variabilis strain ANT9112 
prokMSA_id:82388 Halomonas boliviensis strain LC1 
prokMSA_id:82406 Halomonas sp. ANT9086 
2.28.3.11.1.7.8939 OTU 1 seq
prokMSA_id:8146 Halomonas QSSC9-11 str. QSSC9-11
2.28.3.11.1.7.8981 OTU 1 seq
prokMSA_id:24119 Halomonas sp. ML-027 
2.28.3.11.1.7.8989 OTU 1 seq
prokMSA_id:44057 Halomonas sp. Loihi-Chm-5 
2.28.3.11.1.7.9025 OTU 1 seq
prokMSA_id:34220 Halomonas sp. UT103 
2.28.3.11.1.7.9471 OTU 1 seq
prokMSA_id:79151 Gamma UMB18C 
2.28.3.11.1.7.9534 OTU 2 seqs
prokMSA_id:61011 Halomonas sp. SYO J42 
prokMSA_id:61012 Halomonas sp. TNB I26 
2.28.3.11.1.8 HLM.ELONGATA_SUBGROUP 17 seqs
2.28.3.11.1.8.8262 OTU 1 seq
prokMSA_id:36784 Halomonas cupida 
2.28.3.11.1.8.8466 OTU 1 seq
prokMSA_id:73550 O11D12 
2.28.3.11.1.8.8728 OTU 2 seqs
prokMSA_id:8162 Halomonas halmophila ATCC 19717 . M59153
prokMSA_id:26353 Halomonas halmophila strain ATCC 19717
2.28.3.11.1.8.8879 OTU 1 seq
prokMSA_id:39499 antarctic soil clone bh3.31 
2.28.3.11.1.8.8903 OTU 4 seqs
prokMSA_id:8165 Halomonas salina ATCC 49509
prokMSA_id:8166 Halomonas salina DSM 5928
prokMSA_id:25638 Halomonas salina strain F8-11 T
prokMSA_id:52868 Halomonas salina AF301407
2.28.3.11.1.8.9071 OTU 1 seq
prokMSA_id:8170 Halomonas halodenitrificans ATCC 13511
2.28.3.11.1.8.9141 OTU 1 seq
prokMSA_id:67708 Halomonas sp. SK1 
2.28.3.11.1.8.9201 OTU 1 seq
prokMSA_id:8171 Halomonas salina ATCC 49509
2.28.3.11.1.8.9328 OTU 1 seq
prokMSA_id:46225 sp. Lake Bogoria isolate 8B1
2.28.3.11.1.8.9382 OTU 1 seq
prokMSA_id:79723 clone:OHKB7.22
2.28.3.11.1.8.9592 OTU 1 seq
prokMSA_id:28015 Halomonas alimentaria 
2.28.3.11.1.8.9629 OTU 1 seq
prokMSA_id:33427 sp. Lake Bogoria isolate 65B4
2.28.3.11.1.8.9645 OTU 1 seq
prokMSA_id:43696 sp. Lake Magadi isolate 27M1
2.28.3.11.2 OSP.MARIS_SUBGROUP 48 seqs
2.28.3.11.2.8202 OTU 1 seq
prokMSA_id:59151 Oceanospirillum sp. MED92 
2.28.3.11.2.8351 OTU 7 seqs
prokMSA_id:35476 Marine 'Sippewissett 2-32' AF055821
prokMSA_id:51065 Microbulbifer salipaludis strain SM-1 AF479688
prokMSA_id:55775 Pseudomonas elongata strain DSM 6810 
prokMSA_id:85971 Pseudomonas sp. CJ11075 
prokMSA_id:92740 Microbulbifer sp. NRL-TS4 AY357901
prokMSA_id:93132 Microbulbifer sp. NRL-CB10 AY357895
prokMSA_id:95512 Microbulbifer sp. JAMB-A7 AB107975
2.28.3.11.2.8596 OTU 6 seqs
prokMSA_id:22558 gamma clone Arctic95B-7 
prokMSA_id:26646 gamma clone Arctic95B-13 
prokMSA_id:79764 clone ARKICE-72 
prokMSA_id:80311 clone ARKDMS-13 
prokMSA_id:80534 clone ARKIA-75 
prokMSA_id:81989 Arctic sea ice clone ARKXVI/2-134 
2.28.3.11.2.8655 OTU 1 seq
prokMSA_id:29312 sponge symbiont JAWS20 
2.28.3.11.2.8705 OTU 1 seq
prokMSA_id:60370 Halomonadaceae PH27A 
2.28.3.11.2.8722 OTU 1 seq
prokMSA_id:8189 Oceanospirillum linum ATCC 11336
2.28.3.11.2.8726 OTU 1 seq
prokMSA_id:33570 gamma MERTZ_2CM_259 
2.28.3.11.2.8779 OTU 3 seqs
prokMSA_id:8184 Oceanospirillum beijerinckii subsp. pelagicum str. SWC UF1 I
prokMSA_id:8186 Oceanospirillum beijerinckii subsp. beijerinckii IFO 15445
prokMSA_id:8187 Oceanospirillum beijerinckii subsp. beijerinckii ATCC 12754 
2.28.3.11.2.8797 OTU 4 seqs
prokMSA_id:8178 Oceanospirillum maris subsp. williamsae str. 2b IFO 15468
prokMSA_id:8180 Oceanospirillum maris subsp. hiroshimense IFO 13616
prokMSA_id:8182 Oceanospirillum maris subsp. maris ATCC 27649
prokMSA_id:8183 Oceanospirillum maris subsp. maris str. Jannasch 10 ATCC 275
2.28.3.11.2.9016 OTU 1 seq
prokMSA_id:45957 gamma KTc1119 
2.28.3.11.2.9035 OTU 1 seq
prokMSA_id:83738 Microbulbifer sp. CJ11049 
2.28.3.11.2.9092 OTU 1 seq
prokMSA_id:8176 Oceanospirillum multiglobuliferum IFO 13614
2.28.3.11.2.9103 OTU 1 seq
prokMSA_id:8179 clone HstpL43
2.28.3.11.2.9161 OTU 1 seq
prokMSA_id:8181 str. BD1-7
2.28.3.11.2.9191 OTU 1 seq
prokMSA_id:31816 marine 
2.28.3.11.2.9340 OTU 1 seq
prokMSA_id:50920 gamma MERTZ_2CM_227 
2.28.3.11.2.9454 OTU 1 seq
prokMSA_id:37312 gamma MERTZ_0CM_134 
2.28.3.11.2.9495 OTU 1 seq
prokMSA_id:81830 Antarctic sea ice clone ANTXI/4_14-16 
2.28.3.11.2.9514 OTU 1 seq
prokMSA_id:26630 Unknown marine gamma NOR5 
2.28.3.11.2.9648 OTU 13 seqs
prokMSA_id:8177 clone OCS44
prokMSA_id:8790 clone OM10
prokMSA_id:18452 isolate HRV33 Z88589
prokMSA_id:18789 gamma NAC11-19 
prokMSA_id:21417 gamma MB11E02 
prokMSA_id:22651 gamma NAC11-11 
prokMSA_id:54612 gamma MB12D03 ; and 23S complete 
prokMSA_id:54824 gamma MB11B08 and 23S genes 
prokMSA_id:54972 gamma MB11G09 and 23S genes 
prokMSA_id:55020 gamma MB12G11 and 23S genes 
prokMSA_id:60645 gamma clone AEGEAN_146 AF406528
prokMSA_id:72166 gamma clone AEGEAN_209 
prokMSA_id:92279 gamma clone PLY-P1-108 AY354844
2.28.3.11.3 MARINOMONAS_ASSEMBLAGE 34 seqs
2.28.3.11.3.8230 OTU 1 seq
prokMSA_id:63932 gamma MERTZ_2CM_247 
2.28.3.11.3.8289 OTU 1 seq
prokMSA_id:71553 gamma clone BIyi10
2.28.3.11.3.8322 OTU 1 seq
prokMSA_id:8192 ATCC 27130
2.28.3.11.3.8330 OTU 1 seq
prokMSA_id:8211 clone OM241
2.28.3.11.3.8329 OTU 1 seq
prokMSA_id:8210 Marinomonas protea
2.28.3.11.3.8345 OTU 1 seq
prokMSA_id:8195 Oceanospirillum ML-158 str. ML-158
2.28.3.11.3.8348 OTU 1 seq
prokMSA_id:80239 Arctic sea ice ARK10038 
2.28.3.11.3.8496 OTU 1 seq
prokMSA_id:53230 Marinomonas sp. kbs31 
2.28.3.11.3.8653 OTU 1 seq
prokMSA_id:79342 clone ZA3706c 
2.28.3.11.3.8673 OTU 3 seqs
prokMSA_id:43675 Neptunomonas SIC.9029 AF277515
prokMSA_id:79245 UMB8C 
prokMSA_id:79509 Gamma UMB6E 
2.28.3.11.3.8696 OTU 1 seq
prokMSA_id:16507 gamma Arctic95D-6 
2.28.3.11.3.8769 OTU 2 seqs
prokMSA_id:39985 gamma clone Arctic95B-19 AF353240
prokMSA_id:44003 gamma clone Arctic95B-8 
2.28.3.11.3.8828 OTU 1 seq
prokMSA_id:31898 Marinomonas sp. kbs18 
2.28.3.11.3.8894 OTU 1 seq
prokMSA_id:79615 clone ARKDMS-38 
2.28.3.11.3.8950 OTU 1 seq
prokMSA_id:70226 Marine Tw-1 
2.28.3.11.3.9010 OTU 2 seqs
prokMSA_id:79486 clone ZA3411c 
prokMSA_id:79531 clone ZA3313c 
2.28.3.11.3.9127 OTU 1 seq
prokMSA_id:79806 clone ARKIA-132 
2.28.3.11.3.9131 OTU 1 seq
prokMSA_id:38461 gamma clone:TYM--6 
2.28.3.11.3.9351 OTU 1 seq
prokMSA_id:79392 clone ZA2333c 
2.28.3.11.3.9444 OTU 1 seq
prokMSA_id:63249 clone FW23 
2.28.3.11.3.9515 OTU 1 seq
prokMSA_id:50527 Marinomonas SIC.129 
2.28.3.11.3.9560 OTU 1 seq
prokMSA_id:8202 clone HstpL70
2.28.3.11.3.9564 OTU 1 seq
prokMSA_id:8206 Oceanospirillum jannaschii IFO 15466
2.28.3.11.3.9563 OTU 1 seq
prokMSA_id:30213 Marinomonas sp. GOBB3-320 
2.28.3.11.3.9580 OTU 1 seq
prokMSA_id:25472 gamma MERTZ_2CM_175 
2.28.3.11.3.9614 OTU 2 seqs
prokMSA_id:8200 Oceanospirillum kriegii ATCC 27133
prokMSA_id:8201 Oceanospirillum kriegii IFO 15467
2.28.3.11.3.9634 OTU 1 seq
prokMSA_id:8213 clone HstpL58
2.28.3.11.3.9650 OTU 1 seq
prokMSA_id:8214 Marinomonas vaga ATCC 27119
2.28.3.11.3.9653 OTU 1 seq
prokMSA_id:8216 clone HstpL38
2.28.3.12 ALCANIVORAX_AND_FUNDIBACTER_GROUP 60 seqs
2.28.3.12.8237 OTU 1 seq
prokMSA_id:53763 gamma clone MPD-13 
2.28.3.12.8335 OTU 1 seq
prokMSA_id:28452 Alcanivorax sp. K3-3 
2.28.3.12.8367 OTU 1 seq
prokMSA_id:23790 Gamma KT0221 
2.28.3.12.8434 OTU 28 seqs
prokMSA_id:8229 Alcanivorax borkumensis str. SK2 DSM 11573 . Y12579
prokMSA_id:8230 Alcanivorax borkumensis str. LE4. AF062642
prokMSA_id:8231 str. ST1. AB005655
prokMSA_id:8232 Fundibacter jadensis str. T9. AJ001150
prokMSA_id:17943 gamma Arctic95B-15 AF354609
prokMSA_id:19155 gamma 0%N-26d-6 AF432314
prokMSA_id:20619 clone 4-Org2-35 
prokMSA_id:30293 gamma Arctic96AD-24 AF354604
prokMSA_id:32531 clone 4-Org2-25 AF143832
prokMSA_id:33663 Alcanivorax sp. ST-T1 AB055206
prokMSA_id:35297 Alcanivorax borkumensis isolate ME103 AJ302701
prokMSA_id:36780 gamma 0%N-26d-48 AF432315
prokMSA_id:40587 Alcanivorax sp. K2-1 AB055204
prokMSA_id:40847 gamma Arctic96A-12 AF354610
prokMSA_id:41172 Alcanivorax sp. Cro1 AB053123
prokMSA_id:41476 gamma Arctic96BD-24 AF354603
prokMSA_id:45125 Alcanivorax sp. Shm-2 AB058675
prokMSA_id:48177 Alcanivorax sp. Mho1 AB053124
prokMSA_id:49307 Alcanivorax sp. Wf-1 AB055208
prokMSA_id:49326 Alcanivorax sp. Nag1 AB053122
prokMSA_id:77297 Alcanivorax sp. clone SR11d6 AF548762
prokMSA_id:77561 Alcanivorax sp. clone 1%N-6d-3 AF548763
prokMSA_id:79284 clone ZA3711c AF382125
prokMSA_id:82525 Marine arctic deep-sea HE12 
prokMSA_id:97143 Alcanivorax sp. EPR 17 AY394875
prokMSA_id:97214 Alcanivorax sp. EPR 27 W AY394880
prokMSA_id:97257 Alcanivorax sp. EPR 19 AY394876
prokMSA_id:97776 Alcanivorax sp. EPR 20 AY394877
2.28.3.12.8441 OTU 1 seq
prokMSA_id:20992 gamma MERTZ_2CM_38 
2.28.3.12.8647 OTU 1 seq
prokMSA_id:25089 gamma kpj53f 
2.28.3.12.8772 OTU 6 seqs
prokMSA_id:24418 Alcanivorax sp. TE-9 AB055207
prokMSA_id:72421 Alcanivorax sp. PR-1 AB053132
prokMSA_id:80125 Alcanivorax sp. B-5 
prokMSA_id:88713 Alcanivorax sp. clone MBAE17 AJ567578
prokMSA_id:96374 Alcanivorax sp. EPR 10 AY394868
prokMSA_id:97379 Alcanivorax sp. EPR 6 AY394865
2.28.3.12.8844 OTU 8 seqs
prokMSA_id:8233 str. POO-15
prokMSA_id:19510 gamma U78931
prokMSA_id:23132 Marine obligately oligotrophic POO-7 AB022205
prokMSA_id:24863 Marine obligately oligotrophic POO-3 AB022201
prokMSA_id:64885 Alcanivorax venusti strain ISO1 AF328761
prokMSA_id:68293 clone MN13BT4-47 AF361673
prokMSA_id:68301 clone MN12BT3-35 
prokMSA_id:74819 Marine obligately oligotrophic POO-13 AB022208
2.28.3.12.8927 OTU 1 seq
prokMSA_id:51048 gamma clone MPD-12 
2.28.3.12.9043 OTU 4 seqs
prokMSA_id:8234 clone OM60. U70696
prokMSA_id:62464 Gamma HTCC160 
prokMSA_id:96552 Marine gamma HTCC2223 AY386336
prokMSA_id:96871 Marine gamma HTCC2080 AY386339
2.28.3.12.9075 OTU 1 seq
prokMSA_id:49300 Marine obligately oligotrophic POO-9 
2.28.3.12.9442 OTU 5 seqs
prokMSA_id:49655 gamma MERTZ_0CM_226 
prokMSA_id:59780 clone OB3_140 AY133412
prokMSA_id:59783 clone BB2_126 AY133409
prokMSA_id:91523 clone ANT18/2_88 AY135666
prokMSA_id:91662 clone ANT18/2_35 AY135664
2.28.3.12.9602 OTU 1 seq
prokMSA_id:17600 Marine obligately oligotrophic POO-10 
2.28.3.12.9658 OTU 1 seq
prokMSA_id:16850 Alcanivorax sp. Haw1 
2.28.3.13 PSEUDOMONAS_AND_RELATIVES 813 seqs
2.28.3.13.1 ACINETOBACTER_SUBGROUP 162 seqs
2.28.3.13.1.1 MRX.CATARRHALIS_SUBGROUP 94 seqs
2.28.3.13.1.1.8178 OTU 2 seqs
prokMSA_id:52903 Psychrophilic marine PS03 complete and -23S intergenic space
prokMSA_id:79201 UMB8G 
2.28.3.13.1.1.8208 OTU 3 seqs
prokMSA_id:8280 Moraxella caviae. X79220
prokMSA_id:8281 Moraxella caviae str. GP 11 CCUG 355
prokMSA_id:8282 Moraxella caviae str. GP 11 ATCC 14659 . AJ247220
2.28.3.13.1.1.8245 OTU 1 seq
prokMSA_id:64956 Moraxellaceae OS3.5K-35 
2.28.3.13.1.1.8281 OTU 3 seqs
prokMSA_id:8296 Psychrobacter phenylpyruvicus NCTC 10526 . X74898
prokMSA_id:8297 Psychrobacter phenylpyruvicus ATCC 23333
prokMSA_id:8298 Moraxella phenylpyruvica str. 752/52. AF005192
2.28.3.13.1.1.8366 OTU 28 seqs
prokMSA_id:8257 Psychrobacter QSSC5-4 str. QSSC5-4. AF170743
prokMSA_id:8305 Psychrobacter QSSC8-7 str. QSSC8-7
prokMSA_id:18681 Psychrobacter pacificensis strain:NIBH P2J13
prokMSA_id:24089 Psychrobacter pacificensis strain:NIBH P2J2
prokMSA_id:32985 Psychrobacter glacincola strain DSM 12194T AJ312213
prokMSA_id:33577 Psychrobacter pacificensis strain:NIBH P2K18
prokMSA_id:36033 Psychrobacter pacificensis strain:NIBH P2K17
prokMSA_id:39704 Marine psychrotrophic MstK25 strain MstK25
prokMSA_id:43031 Psychrobacter pacificensis strain:NIBH P2J3
prokMSA_id:43380 Psychrobacter aff. glacinola A1/C-aer/OII AJ297439
prokMSA_id:51114 Psychrobacter immobilis strain DSM 7229T
prokMSA_id:51808 Psychrobacter pacificensis strain:NIBH P2K6=IFO 16279
prokMSA_id:62417 gamma clone FTL207 AF529097
prokMSA_id:63467 Psychrobacter sp. p3C AJ495805
prokMSA_id:69091 Psychrobacter sp. TAD1 strain TAD1
prokMSA_id:75020 Psychrobacter luti strain LMG 21276 AJ430828
prokMSA_id:75092 Psychrobacter glacincola strain LMG 21274 AJ430830
prokMSA_id:75780 Psychrobacter glacincola strain LMG 21273 AJ430829
prokMSA_id:77174 Psychrobacter fozii strain LMG 21280
prokMSA_id:79001 Psychrobacter sp. MJYP.15.12 
prokMSA_id:79292 Gamma UMB3G 
prokMSA_id:79312 Psychrobacter glacialis strain DD43 AJ539102
prokMSA_id:79546 Gamma UMB21A 
prokMSA_id:79867 Arctic sea ice ARK9987 AF468405
prokMSA_id:80063 clone ARKCH4-25 AF468271
prokMSA_id:82102 Psychrobacter glacincola strain ANT9276b 
prokMSA_id:86349 Antarctic R-8160 strain R-8160 AJ440989
prokMSA_id:88187 Psychrobacter okhotskensis AB094794
2.28.3.13.1.1.8369 OTU 1 seq
prokMSA_id:8249 Moraxella cuniculi CCUG 27179
2.28.3.13.1.1.8574 OTU 1 seq
prokMSA_id:34561 Moraxella canis strain LMG 11186 P37
2.28.3.13.1.1.8582 OTU 2 seqs
prokMSA_id:8253 Psychrobacter immobilis
prokMSA_id:8255 Psychrobacter immobilis ACAM 286
2.28.3.13.1.1.8604 OTU 1 seq
prokMSA_id:56708 Moraxella sp. ATCC 29468 strain:IAM 14971
2.28.3.13.1.1.8626 OTU 8 seqs
prokMSA_id:8262 Moraxella osloensis str. 5873
prokMSA_id:8266 str. rJ3
prokMSA_id:8267 Moraxella osloensis str. Ben 58
prokMSA_id:8283 Moraxella sp. str. S2-11. X86616
prokMSA_id:30731 Gamma S-St0-7B 
prokMSA_id:63603 Moraxella osloensis 
prokMSA_id:72890 Moraxella osloensis strain PIV-10-1
prokMSA_id:86658 Enhydrobacter aerosaccus strain LMG 21877
2.28.3.13.1.1.8656 OTU 1 seq
prokMSA_id:48597 Moraxella ovis 
2.28.3.13.1.1.8710 OTU 2 seqs
prokMSA_id:8259 Moraxella bovis ATCC 10900
prokMSA_id:8260 Moraxella bovis str. 5
2.28.3.13.1.1.8838 OTU 5 seqs
prokMSA_id:79510 Psychrobacter salsus strain DD48
prokMSA_id:79652 Arctic sea ice ARK10012 AF468384
prokMSA_id:96330 Psychrobacter psychrophila isolate CMS 30 AJ584831
prokMSA_id:97236 Psychrobacter sp. DY9-2 AY383045
prokMSA_id:98657 Psychrobacter sp. 9-2 AY382586
2.28.3.13.1.1.8873 OTU 1 seq
prokMSA_id:8254 Psychrobacter immobilis str. IC040
2.28.3.13.1.1.8878 OTU 10 seqs
prokMSA_id:8265 Moraxella catarrhalis ATCC 25238
prokMSA_id:8278 Moraxella catarrhalis ATCC 25238
prokMSA_id:8279 Moraxella catarrhalis ATCC 25238 . AJ247218
prokMSA_id:8289 Moraxella catarrhalis. L13736
prokMSA_id:8295 Moraxella catarrhalis NCTC 11020 . X74903
prokMSA_id:28350 M.catarrhalis 
prokMSA_id:37189 Moraxella catarrhalis 3 AF192341
prokMSA_id:37220 Moraxella catarrhalis 1 AF192339
prokMSA_id:41825 Moraxella catarrhalis 2 AF192340
prokMSA_id:51485 Moraxella catarrhalis AJ247219
2.28.3.13.1.1.8897 OTU 1 seq
prokMSA_id:19444 Moraxella lincolnii strain CCUG 9405T
2.28.3.13.1.1.8931 OTU 1 seq
prokMSA_id:8261 Moraxella cuniculi CCUG 2154
2.28.3.13.1.1.8993 OTU 2 seqs
prokMSA_id:8250 Moraxella atlantae str. 1922T
prokMSA_id:20040 Moraxella atlantae strain 104/948 AJ312378
2.28.3.13.1.1.9087 OTU 3 seqs
prokMSA_id:40637 antarctic soil clone bh5.53 
prokMSA_id:54940 antarctic soil clone bh3.5 
prokMSA_id:68934 antarctic soil clone bh1.11 AF417867
2.28.3.13.1.1.9110 OTU 15 seqs
prokMSA_id:21208 Psychrobacter sp. SKA18 AF261040
prokMSA_id:24648 Psychrobacter marincola strain KMM 277
prokMSA_id:27945 Psychrobacter submarinus strain KMM 225
prokMSA_id:68772 Glacial ice Trans12 
prokMSA_id:78979 Psychrobacter sp. 2216.25.11 AB094460
prokMSA_id:79638 Arctic sea ice ARK10000 
prokMSA_id:80205 clone:OHKB11.18
prokMSA_id:93270 Psychrobacter sp. mp2 isolate mp2 AJ551116
prokMSA_id:93441 Psychrobacter sp. wp37 isolate wp37 AJ551112
prokMSA_id:93479 Psychrobacter sp. es3 isolate es3 AJ551125
prokMSA_id:93494 Pseudomonas sp. wp33 isolate wp33 AJ551110
prokMSA_id:93781 Hyphomicrobium sp. wp14 isolate wp14 AJ551095
prokMSA_id:93964 Psychrobacter sp. es5 isolate es5 AJ551127
prokMSA_id:94032 Psychrobacter sp. mp9 isolate mp9 AJ551122
prokMSA_id:94097 Psychrobacter sp. wp16 isolate wp16 AJ551096
2.28.3.13.1.1.9573 OTU 3 seqs
prokMSA_id:28643 Psychrobacter sp. ikaite c11 isolate ikaite c11 AJ431338
prokMSA_id:74450 Psychrobacter faecalis strain Iso-46 AJ421528
prokMSA_id:85442 Psychrobacter pulmonis strain CECT 5989T
2.28.3.13.1.5 ACN.CALCOACETICUS_SUBGROUP 1 seq
2.28.3.13.1.5.8565 OTU 1 seq
prokMSA_id:8315 Acinetobacter sp. str. 942
2.28.3.13.1.6 ACN.BAUMANNII_SUBGROUP 3 seqs
2.28.3.13.1.6.8619 OTU 1 seq
prokMSA_id:8322 Acinetobacter sp. DSM 587
2.28.3.13.1.6.8796 OTU 2 seqs
prokMSA_id:8320 clone T58
prokMSA_id:8321 clone T23
2.28.3.13.1.7 ACN.LWOFFII_SUBGROUP 64 seqs
2.28.3.13.1.7.8203 OTU 1 seq
prokMSA_id:34411 clone BIfciv2
2.28.3.13.1.7.8727 OTU 1 seq
prokMSA_id:84904 Alkanindiges hongkongensis 
2.28.3.13.1.7.8790 OTU 1 seq
prokMSA_id:30973 Marine obligately oligotrophic POO-6 
2.28.3.13.1.7.9063 OTU 1 seq
prokMSA_id:30013 GR-B1-2-35 clone GR-B1-2-35
2.28.3.13.1.7.9359 OTU 47 seqs
prokMSA_id:8310 Acinetobacter calcoaceticus ATCC 33604
prokMSA_id:8311 Acinetobacter calcoaceticus str. group one ATCC 23055
prokMSA_id:8312 Acinetobacter sp. str. Ben 59. X95305
prokMSA_id:8313 Acinetobacter sp. str. Group TU14 ATCC 17905
prokMSA_id:8314 Acinetobacter sp. str. 382
prokMSA_id:8318 Acinetobacter baumannii str. IGSchaub Biol 1 DSM 30008. X816
prokMSA_id:8326 Acinetobacter baumannii str. 2208 DSM 30007 . X81660
prokMSA_id:8327 Acinetobacter junii str. 2723/59 DSM 6964 . X81664
prokMSA_id:8330 clone T27. Z93987
prokMSA_id:8333 Acinetobacter 'SMCC B0445' SMCC B0445. U87125
prokMSA_id:8334 str. HTC042. AB010848
prokMSA_id:8335 str. HTC038. AB010849
prokMSA_id:8336 Acinetobacter junii DSM 1532. X81658
prokMSA_id:8342 Acinetobacter sp. DSM 590
prokMSA_id:8343 Acinetobacter OM-E81 str. OM-H10
prokMSA_id:8344 Acinetobacter sp. str. Group ten ATCC 17924
prokMSA_id:8347 Acinetobacter radioresistens str. FO-1 DSM 6976 . X81666
prokMSA_id:8349 Acinetobacter sp. str. M 17694. Z93445
prokMSA_id:8386 Acinetobacter johnsonii. X89775
prokMSA_id:17792 Acinetobacter junii AF417863
prokMSA_id:18584 O11F12 AF220313
prokMSA_id:29502 Acinetobacter sp. ST-550 AB062283
prokMSA_id:30135 Acinetobacter sp. IrT-R5M2-7 
prokMSA_id:31677 Acinetobacter sp. Sea-12 AF392991
prokMSA_id:31911 clone AF1.3 
prokMSA_id:33723 O18A5 AF220328
prokMSA_id:36199 Acinetobacter venetianus strain ATCC 31012 AJ295007
prokMSA_id:43948 Acinetobacter sp. strain ATCC 11171
prokMSA_id:48977 Acinetobacter sp. BC187 
prokMSA_id:49347 Acinetobacter sp. Sea-9 AF390087
prokMSA_id:52109 Acinetobacter sp. phenon 3 strain LUH1742T Aci651
prokMSA_id:56588 clone Phe66 
prokMSA_id:58796 Acinetobacter sp. ATCC 31012 AF542963
prokMSA_id:60333 clone Phe12 
prokMSA_id:60335 clone Phe100 
prokMSA_id:60337 clone Nap34 
prokMSA_id:60341 clone Glu57 
prokMSA_id:61831 gamma clone CLi289 
prokMSA_id:62949 Acinetobacter radioresistens strain 50v1 rrn AF526908
prokMSA_id:70076 Acinetobacter sp. phenon 2 strain LUH 4591 AJ275040
prokMSA_id:70104 O11G12 AF220315
prokMSA_id:78070 gamma clone:APe9_1
prokMSA_id:78191 gamma clone:Ape4_17 AB074592
prokMSA_id:79198 Acinetobacter junii complete strain:S33 AB101444
prokMSA_id:87534 Acinetobacter genomosp. C1 AY278636
prokMSA_id:94043 Acinetobacter sp. An17 isolate An17 AJ551155
prokMSA_id:96760 Acinetobacter sp. BCH290703A AY380830
2.28.3.13.1.7.9404 OTU 1 seq
prokMSA_id:19349 Acinetobacter sp. EVA13 strain EVA13
2.28.3.13.1.7.9428 OTU 1 seq
prokMSA_id:69970 clone AF2-1D 
2.28.3.13.1.7.9447 OTU 1 seq
prokMSA_id:63614 Acinetobacter sp. AU1523 
2.28.3.13.1.7.9466 OTU 1 seq
prokMSA_id:56661 Acinetobacter tandoii 
2.28.3.13.1.7.9483 OTU 1 seq
prokMSA_id:8387 clone T39
2.28.3.13.1.7.9641 OTU 8 seqs
prokMSA_id:8351 Acinetobacter haemolyticus DSM 6962
prokMSA_id:31749 Acinetobacter haemolyticus strain ATCC 17906T
prokMSA_id:64652 Acinetobacter sp. clone 91_11 
prokMSA_id:64656 Acinetobacter sp. clone 88_17 
prokMSA_id:64658 Acinetobacter sp. clone 91_28 
prokMSA_id:64662 Acinetobacter sp. clone 91_18 
prokMSA_id:64666 Acinetobacter sp. clone 349_19 
prokMSA_id:72138 Acinetobacter sp. clone 349_15 
2.28.3.13.2 TEREDINIBACTER_SUBGROUP 18 seqs
2.28.3.13.2.8204 OTU 1 seq
prokMSA_id:27115 Gamma EHK-1 
2.28.3.13.2.8491 OTU 1 seq
prokMSA_id:80469 clone ARKDMS-49 
2.28.3.13.2.8517 OTU 1 seq
prokMSA_id:36509 marine ZD0117 
2.28.3.13.2.8813 OTU 1 seq
prokMSA_id:77437 Symbiont LP2 of Lyrodus pedicellatus 
2.28.3.13.2.8891 OTU 2 seqs
prokMSA_id:64893 Clostridiaceae pT-428 
prokMSA_id:74482 Clostridiaceae pT-427 
2.28.3.13.2.9061 OTU 1 seq
prokMSA_id:50315 gamma TIHP368-52 
2.28.3.13.2.9134 OTU 1 seq
prokMSA_id:8404 Microbulbifer hydrolyticus str. IRE-31
2.28.3.13.2.9152 OTU 1 seq
prokMSA_id:8405 str. SCB11
2.28.3.13.2.9158 OTU 1 seq
prokMSA_id:8406 Microbulbifer 2-40 str. 2-40
2.28.3.13.2.9159 OTU 1 seq
prokMSA_id:8407 str. BD2-13
2.28.3.13.2.9163 OTU 1 seq
prokMSA_id:8408 str. NKB4
2.28.3.13.2.9169 OTU 1 seq
prokMSA_id:8409 Endobugula sertula str. BnPV
2.28.3.13.2.9272 OTU 1 seq
prokMSA_id:38752 Pseudomonas sp. ND137 
2.28.3.13.2.9300 OTU 1 seq
prokMSA_id:77433 Symbiont LP1 of Lyrodus pedicellatus 
2.28.3.13.2.9336 OTU 1 seq
prokMSA_id:39706 Unclassified Pseudomonas group 
2.28.3.13.2.9622 OTU 2 seqs
prokMSA_id:39120 gamma HOC2 
prokMSA_id:52455 gamma HOC27 
2.28.3.13.4 PS.OLEOVORANS 2 seqs
2.28.3.13.4.9389 OTU 2 seqs
prokMSA_id:8413 Pseudomonas oleovorans IAM 1508
prokMSA_id:71549 Pseudomonas oleovorans complete 
2.28.3.13.5 PS.AERUGINOSA_SUBGROUP 75 seqs
2.28.3.13.5.8487 OTU 1 seq
prokMSA_id:8443 Pseudomonas aeruginosa str. CW-96-1
2.28.3.13.5.8508 OTU 6 seqs
prokMSA_id:8426 Pseudomonas citronellolis DSM 50332
prokMSA_id:8427 Pseudomonas citronellolis ATCC 13674
prokMSA_id:8428 str. A3
prokMSA_id:32513 Pseudomonas sp. AT2 
prokMSA_id:58403 Pseudomonas sp. WAS2 
prokMSA_id:70116 Pseudomonas citronellolis strain TERIDB26 complete 
2.28.3.13.5.8691 OTU 38 seqs
prokMSA_id:8435 Pseudomonas aeruginosa LMG 1242
prokMSA_id:8437 Pseudomonas aeruginosa
prokMSA_id:8438 unnamed organism
prokMSA_id:8441 clone SJA-38
prokMSA_id:8442 clone SJA-64
prokMSA_id:8444 Pseudomonas aeruginosa str. AL98
prokMSA_id:8446 Pseudomonas aeruginosa str. 86351
prokMSA_id:8448 str. BD1-3
prokMSA_id:8449 str. BD3-13. AB015554
prokMSA_id:8450 str. BD4-16
prokMSA_id:8452 str. BD6-3
prokMSA_id:8454 str. JTB12
prokMSA_id:8455 Pseudomonas Bu34 str. Bu34
prokMSA_id:16918 Pseudomonas aeruginosa strain:#790
prokMSA_id:18018 Pseudomonas aeruginosa complete 
prokMSA_id:30696 Pseudomonas aeruginosa 
prokMSA_id:31055 Pseudomonas aeruginosa strain:#129
prokMSA_id:33622 Pseudomonas aeruginosa strain:#797
prokMSA_id:35045 Pseudomonas aeruginosa strain ATCC 10145 
prokMSA_id:38254 Pseudomonas aeruginosa strain:H636
prokMSA_id:43659 Pseudomonas aeruginosa strain:#985-02
prokMSA_id:44181 str. 61716 
prokMSA_id:45396 Pseudomonas sp. strain OLB-1
prokMSA_id:50970 Pseudomonas aeruginosa 
prokMSA_id:51883 Pseudomonas aeruginosa strain:#796
prokMSA_id:52590 Pseudomonas aeruginosa strain:#649
prokMSA_id:52867 Pseudomonas aeruginosa strain:H707
prokMSA_id:59263 Pseudomonas aeruginosa PA01 section 62 of 529 of the complet
prokMSA_id:61832 gamma clone CLi288 
prokMSA_id:62409 gamma clone FTL229 
prokMSA_id:70154 P.aeruginosa strain DSM 50071T 
prokMSA_id:70447 Pseudomonas aeruginosa strain ATCC 33350 
prokMSA_id:71400 Pseudomonas aeruginosa strain ATCC 27316 
prokMSA_id:73809 Pseudomonas aeruginosa strain ATCC 27853 
prokMSA_id:74648 Pseudomonas aeruginosa strain:H706
prokMSA_id:76656 Pseudomonas aeruginosa strain BHP7-6 
prokMSA_id:78808 Pseudomonas thermaerum 
prokMSA_id:81887 Pseudomonas aeruginosa isolate OK1
2.28.3.13.5.8754 OTU 5 seqs
prokMSA_id:8417 str. rJ11
prokMSA_id:8418 str. rJ17
prokMSA_id:8419 str. IpA-1
prokMSA_id:20529 Pseudomonas sp. P400Y-1 
prokMSA_id:35995 Pseudomonas sp. isolate ON3
2.28.3.13.5.8802 OTU 1 seq
prokMSA_id:46393 Cellvibrio sp. R4069 
2.28.3.13.5.8918 OTU 1 seq
prokMSA_id:71972 sp. Lake Elmenteita isolate 45E3
2.28.3.13.5.9002 OTU 5 seqs
prokMSA_id:29570 Paederus melanurus endosymbiont 
prokMSA_id:30919 Paederidus ruficollis endosymbiont 
prokMSA_id:34658 Paederus riparius endosymbiont 
prokMSA_id:37950 Paederus sabaeus endosymbiont 
prokMSA_id:46183 Paederus fuscipes endosymbiont 
2.28.3.13.5.9056 OTU 16 seqs
prokMSA_id:8431 Pseudomonas sp. str. CRE 11
prokMSA_id:8440 Pseudomonas aeruginosa. AF137358
prokMSA_id:8451 str. BD5-7
prokMSA_id:21740 Pseudomonas aeruginosa strain:#777
prokMSA_id:24949 Pseudomonas aeruginosa strain:ATCC 27853
prokMSA_id:36294 Pseudomonas aeruginosa DL1 
prokMSA_id:41268 Pseudomonas aeruginosa strain:#985 AB037556
prokMSA_id:47079 Pseudomonas aeruginosa strain:#47
prokMSA_id:49042 
prokMSA_id:52395 Pseudomonas aeruginosa strain:#780
prokMSA_id:59706 Pseudomonas aeruginosa complete 
prokMSA_id:64390 Pseudomonas sp. Gu5828 
prokMSA_id:72949 Pseudomonas aeruginosa strain ATCC 4207 
prokMSA_id:85661 Pseudomonas aeruginosa complete 
prokMSA_id:85816 Pseudomonas aeruginosa 
prokMSA_id:88574 Pseudomonas aeruginosa strain ATCC 27853 AY268175
2.28.3.13.5.9074 OTU 1 seq
prokMSA_id:43286 sp. Lake Nakuru isolate 52N3
2.28.3.13.5.9588 OTU 1 seq
prokMSA_id:61102 Pseudomonas citronellolis strain TERIDB18 complete 
2.28.3.13.6 AZO.VINELANDII 1 seq
2.28.3.13.6.8628 OTU 1 seq
prokMSA_id:43151 clone KS38 
2.28.3.13.7 PS.STUTZERI_SUBGROUP 35 seqs
2.28.3.13.7.8215 OTU 1 seq
prokMSA_id:44798 Pseudomonas sp. Loihi-Chm-9 
2.28.3.13.7.8288 OTU 1 seq
prokMSA_id:49890 Halomonas sp. Loihi-Chm-8 
2.28.3.13.7.8549 OTU 1 seq
prokMSA_id:43178 Pseudomonas sp. Loihi-Chm-10 
2.28.3.13.7.8760 OTU 1 seq
prokMSA_id:8513 clone HstpL23
2.28.3.13.7.8777 OTU 2 seqs
prokMSA_id:8500 Pseudomonas PK str. PK
prokMSA_id:71836 Pseudomonas sp. KNA6-5 
2.28.3.13.7.8852 OTU 12 seqs
prokMSA_id:8498 Pseudomonas stutzeri str. KC
prokMSA_id:8499 Pseudomonas stutzeri str. WM88
prokMSA_id:8502 Pseudomonas stutzeri str. KC. AF063219
prokMSA_id:18824 Pseudomonas stutzeri strain 11C2
prokMSA_id:22736 Pseudomonas stutzeri strain 3C59
prokMSA_id:25407 Pseudomonas chloritidismutans 
prokMSA_id:60916 Pseudomonas stutzeri strain 24a51
prokMSA_id:60917 Pseudomonas stutzeri strain 24a43
prokMSA_id:60920 Pseudomonas stutzeri strain 24a97
prokMSA_id:60925 Pseudomonas stutzeri strain 20G
prokMSA_id:72822 Pseudomonas stutzeri strain 24a112
prokMSA_id:87959 Pseudomonas stutzeri strain 4C74 AJ312160
2.28.3.13.7.8988 OTU 1 seq
prokMSA_id:29864 gamma clone R187 
2.28.3.13.7.9068 OTU 1 seq
prokMSA_id:8477 Pseudomonas stutzeri str. A1501
2.28.3.13.7.9228 OTU 1 seq
prokMSA_id:76785 Pseudomonas stutzeri isolate HY-105
2.28.3.13.7.9280 OTU 1 seq
prokMSA_id:8488 Pseudomonas mendocina str. KR
2.28.3.13.7.9295 OTU 11 seqs
prokMSA_id:8471 Pseudomonas fragi IAM 12402
prokMSA_id:8476 Pseudomonas stutzeri str. Stanier 221 CCUG 11256 . U26262
prokMSA_id:8489 Pseudomonas stutzeri str. DNSP21 DSM 6082
prokMSA_id:8496 Pseudomonas stutzeri str. Stanier 222 ATCC 17589. U25432
prokMSA_id:19945 Nitrogen-fixing MIS 
prokMSA_id:41253 Pseudomonas stutzeri strain phen8 complete 
prokMSA_id:48469 Pseudomonas stutzeri 
prokMSA_id:64654 Pseudomonas sp. clone 349_11 
prokMSA_id:71825 Pseudomonas fragi complete D84014
prokMSA_id:91116 K65 AY345461
prokMSA_id:91395 K2-20 AY345431
2.28.3.13.7.9297 OTU 1 seq
prokMSA_id:48401 Azotobacter beijerinckii isolate ICMP 8673; ATCC 19360
2.28.3.13.7.9540 OTU 1 seq
prokMSA_id:71026 Teredinibacter turnerae 
2.28.3.13.8 PS.MENDOCINA_SUBGROUP 58 seqs
2.28.3.13.8.8344 OTU 1 seq
prokMSA_id:55384 UNSW3 
2.28.3.13.8.8553 OTU 8 seqs
prokMSA_id:8517 Pseudomonas mendocina LMG 1223
prokMSA_id:39176 Pseudomonas sp. HMD H5 
prokMSA_id:62345 Pseudomonas straminea strain:IAM 1587
prokMSA_id:66624 Pseudomonas sp. SMCC B0138 
prokMSA_id:70462 Pseudomonas mendocina isolate ICMP 13540; ATCC 25411 AJ30831
prokMSA_id:71894 P.mendocina strain DSM 50017T 
prokMSA_id:91103 JB17 AY345382
prokMSA_id:91717 K49 AY345470
2.28.3.13.8.8725 OTU 2 seqs
prokMSA_id:47897 Pseudomonas sp. 2N1-1 
prokMSA_id:75837 gamma clone Gitt-KF-67
2.28.3.13.8.8827 OTU 1 seq
prokMSA_id:8525 Pseudomonas pseudoalcaligenes str. ML-A04
2.28.3.13.8.8831 OTU 2 seqs
prokMSA_id:27037 Pseudomonas sp. 2FB9 
prokMSA_id:87080 Pseudomonas stutzeri strain 24a75 AJ312229
2.28.3.13.8.8850 OTU 1 seq
prokMSA_id:8531 Agrobacterium agile IAM 12615
2.28.3.13.8.8859 OTU 3 seqs
prokMSA_id:44232 Sulfide-oxidizing N9-1 AF393509
prokMSA_id:82664 clone CARB_ESS_2 
prokMSA_id:83437 clone CARB_ESS_10 
2.28.3.13.8.8868 OTU 1 seq
prokMSA_id:8532 Azotobacter chroococcum ATCC 9043
2.28.3.13.8.9037 OTU 2 seqs
prokMSA_id:25543 clone T12-4 AF332355
prokMSA_id:66758 Pseudomonas sp. AST1 
2.28.3.13.8.9050 OTU 1 seq
prokMSA_id:53970 Pseudomonas sp. ML-124 
2.28.3.13.8.9238 OTU 33 seqs
prokMSA_id:8516 Pseudomonas mendocina ATCC 25413
prokMSA_id:8520 Pseudomonas pseudoalcaligenes subsp. pseudoalcaligenes LMG 1
prokMSA_id:8526 Pseudomonas pseudoalcaligenes str. ML-A02
prokMSA_id:8528 Pseudomonas pseudoalcaligenes str. ML-052
prokMSA_id:8530 str. HTB147
prokMSA_id:8534 str. HTB110
prokMSA_id:8535 str. HTB139. AB010852
prokMSA_id:8536 str. HTB095
prokMSA_id:8543 str. LE1
prokMSA_id:22044 Saltmarsh clone LCP-79 
prokMSA_id:26691 Pseudomonas mendocina 
prokMSA_id:32340 Elbe River snow isolate Iso6 
prokMSA_id:33037 Pseudomonas alcalophila 
prokMSA_id:34621 Pseudomonas sp. GP11 
prokMSA_id:44974 Pseudomonas sp. SMCC D0715 
prokMSA_id:56329 Pseudomonas sp. SMCC B0310 
prokMSA_id:57400 Pseudomonas sp. K50 
prokMSA_id:66615 Pseudomonas sp. SMCC B0252 
prokMSA_id:66616 Pseudomonas sp. SMCC B0280 
prokMSA_id:66618 Pseudomonas sp. SMCC B0259 
prokMSA_id:66619 Pseudomonas sp. SMCC B0251 
prokMSA_id:66623 Pseudomonas sp. SMCC B0205 
prokMSA_id:66759 Pseudomonas sp. SMCC B0307 
prokMSA_id:67521 Pseudomonas nitroreducens strain 0802 
prokMSA_id:67862 Pseudomonas sp. clone DGG18 
prokMSA_id:70216 Pseudomonas pseudoalcaligenes 
prokMSA_id:72702 Pseudomonas mendocina complete 
prokMSA_id:73478 Pseudomonas cf. pseudoalcaligenes 
prokMSA_id:73717 P.pseudoalcaligenes strain DSM 50018T 
prokMSA_id:73739 Pseudomonas oleovorans 
prokMSA_id:79844 Pseudomonas sp. P_wp0231 
prokMSA_id:83866 Pseudomonas alcalophila 
prokMSA_id:88854 gamma clone HN4-26 AY221605
2.28.3.13.8.9424 OTU 1 seq
prokMSA_id:71406 Pseudomonas sp. PCP2 
2.28.3.13.8.9561 OTU 1 seq
prokMSA_id:30870 Azorhizophilus paspali isolate ICMP 7469; ATCC 23833
2.28.3.13.8.9638 OTU 1 seq
prokMSA_id:56532 clone SHA-35
2.28.3.13.11 PS.STRAMINEA_SUBGROUP 5 seqs
2.28.3.13.11.9005 OTU 1 seq
prokMSA_id:66199 Pseudomonas sp. strain KY
2.28.3.13.11.9599 OTU 1 seq
prokMSA_id:8561 IAM 12023
2.28.3.13.11.9613 OTU 2 seqs
prokMSA_id:8562 Pseudomonas flavescens str. B62 NCPPB 3063
prokMSA_id:52398 Pseudomonas flavescens isolate ICMP 13539; ATCC 51555 AJ3083
2.28.3.13.11.9618 OTU 1 seq
prokMSA_id:8563 clone SRang1.28
2.28.3.13.12 PS.LUTEOLA_SUBGROUP 4 seqs
2.28.3.13.12.9258 OTU 1 seq
prokMSA_id:57488 Gamma Y-134 
2.28.3.13.12.9520 OTU 3 seqs
prokMSA_id:8566 Pseudomonas luteola IAM 13000
prokMSA_id:25281 Pseudomonas sp. 13BT 
prokMSA_id:70387 Chryseomonas luteola complete 
2.28.3.13.13 PS.PUTIDA_SUBGROUP 114 seqs
2.28.3.13.13.8474 OTU 1 seq
prokMSA_id:75843 gamma clone S15A-MN7
2.28.3.13.13.8513 OTU 8 seqs
prokMSA_id:8588 Pseudomonas monteilii str. CFML 90-60 CIP 104883
prokMSA_id:8594 Pseudomonas putida str. A10L
prokMSA_id:8595 Pseudomonas putida str. BH. D85996
prokMSA_id:8599 Pseudomonas plecoglossicida str. FPC951
prokMSA_id:28946 Pseudomonas putida 
prokMSA_id:37877 Pseudomonas putida strain ATCC 17390 
prokMSA_id:46291 Pseudomonas putida 
prokMSA_id:66895 Pseudomonas sp. HR 13 
2.28.3.13.13.8540 OTU 3 seqs
prokMSA_id:8598 Pseudomonas MBIC2027 str. MBIC2027
prokMSA_id:28224 S17sBac13 complete 
prokMSA_id:75047 Pseudomonas sp. HY-95/2-1 isolate HY-95/2-1
2.28.3.13.13.8685 OTU 1 seq
prokMSA_id:25527 Cellvibrio fulvus NCIMB 8634 
2.28.3.13.13.8786 OTU 1 seq
prokMSA_id:73539 Cellvibrio sp. R4075 
2.28.3.13.13.9049 OTU 1 seq
prokMSA_id:32552 GR-Sh2-34 clone GR-Sh2-34
2.28.3.13.13.9193 OTU 1 seq
prokMSA_id:25966 gamma MERTZ_2CM_319 
2.28.3.13.13.9219 OTU 91 seqs
prokMSA_id:8570 Pseudomonas fuscovaginae MAFF 301177
prokMSA_id:8580 Pseudomonas putida DSM 291 . Z76667
prokMSA_id:8591 Pseudomonas SF1 str. SF1
prokMSA_id:8592 str. R1
prokMSA_id:8596 Pseudomonas putida str. MnB1
prokMSA_id:8603 Pseudomonas mosselii CIP 105259
prokMSA_id:8609 Pseudomonas amygdali str. L7 LMG 5694 . Z76661
prokMSA_id:8633 Pseudomonas viridiflava LMG 2352
prokMSA_id:8647 Pseudomonas ficuserectae JCM 2400. AB021378
prokMSA_id:8657 Pseudomonas chlororaphis LMG 5004 . Z76657
prokMSA_id:8659 Pseudomonas coronafaciens LMG 13190. Z76660
prokMSA_id:8708 str. A177. U85870
prokMSA_id:8736 Pseudomonas fluorescens DSM 50090 . Z76662
prokMSA_id:8754 Pseudomonas sp. Y1000 X99676
prokMSA_id:8771 Pseudomonas QSSC1-9 str. QSSC1-9
prokMSA_id:8784 Pseudomonas agarici LMG 2112 . Z76652
prokMSA_id:8786 Pseudomonas agarici ATCC 25941 . D84005
prokMSA_id:8787 Pseudomonas graminis str. P 294/08 DSM 11363 . Y11150
prokMSA_id:19059 Pseudomonas sp. SV16 AF251336
prokMSA_id:21401 Pseudomonas putida strain Biotype A
prokMSA_id:21746 Pseudomonas sp. ADP 
prokMSA_id:21815 Pseudomonas gingeri 
prokMSA_id:21829 Pseudomonas graminis strain JPL-8 AY030316
prokMSA_id:25113 Pseudomonas putida strain ATCC 17485 
prokMSA_id:26064 Pseudomonas sp. NZ059 AY014812
prokMSA_id:27902 Pseudomonas sp. WBC-3 
prokMSA_id:29172 Pseudomonas putida strain ATCC 17453 AF094746
prokMSA_id:29593 Pseudomonas cf. monteilii 
prokMSA_id:29844 Pseudomonas putida strain ATCC 17514 AF094741
prokMSA_id:30129 Pseudomonas putida strain Biotype A AJ308313
prokMSA_id:30528 Pseudomonas sp. NZ047 AY014810
prokMSA_id:33137 Pseudomonas putida strain ATCC 17494 AF094740
prokMSA_id:33976 Pseudomonas putida complete 
prokMSA_id:34665 sheep mite Welshpool 59 
prokMSA_id:37815 Pseudomonas gingeri strain NCPPB 3146 AF332511
prokMSA_id:38466 Pseudomonas sp. ML2 
prokMSA_id:41791 Arthrobacter siderocapsulatus complete AF226713
prokMSA_id:42527 Blackwater bioreactor BW32 
prokMSA_id:43780 Pseudomonas sp. SV4 
prokMSA_id:46435 Pseudomonas sp. LAB-27 AB051701
prokMSA_id:48399 Pseudomonas sp. KF/GS-Gitt2-41 
prokMSA_id:51733 Pseudomonas agarici isolate ICMP 2656
prokMSA_id:53552 Pseudomonas putida strain ATCC 11172 
prokMSA_id:56604 Pseudomonas viridiflava strain NZCX09 
prokMSA_id:59723 Pseudomonas sp. WDL5 
prokMSA_id:60438 Pseudomonas sp. Fa4 
prokMSA_id:60439 Pseudomonas sp. Fa20 
prokMSA_id:64655 Pseudomonas sp. clone burs_26 
prokMSA_id:65390 Pseudomonas graminis isolate HhSaOsb AF511514
prokMSA_id:65395 Pseudomonas sp. SaU6sm AF511509
prokMSA_id:65396 Pseudomonas sp. SaU7 
prokMSA_id:65399 Pseudomonas sp. SaO3 AF511508
prokMSA_id:65400 Pseudomonas fluorescens 
prokMSA_id:66755 Pseudomonas sp. SMCC B0608 AF501877
prokMSA_id:66814 Pseudomonas sp. dcm5B 
prokMSA_id:67339 Pseudomonas sp. HhSoUsc AY089990
prokMSA_id:67416 Pseudomonas palleroniana AY091527
prokMSA_id:70197 Pseudomonas chlororaphis isolate ICMP 13613; ATCC 9446 AJ308
prokMSA_id:71222 Pseudomonas sp. NZ092 AY014816
prokMSA_id:72079 Pseudomonas syringae isolate ICMP 3023; ATCC 19310 AJ308316
prokMSA_id:72969 Pseudomonas putida strain P1
prokMSA_id:73091 Pseudomonas putida strain ATCC 12633 AF094736
prokMSA_id:73648 Pseudomonas sp. NZ043 
prokMSA_id:73990 Pseudomonas agarici D84005
prokMSA_id:74050 Pseudomonas alcaligenes 
prokMSA_id:74089 Pseudomonas putida strain GPo1
prokMSA_id:74199 Pseudomonas putida strain ATCC 17642 
prokMSA_id:75144 Pseudomonas putida KT2440 section 3 of 21 of the complete ge
prokMSA_id:75350 Pseudomonas putida KT2440 section 5 of 21 of the complete ge
prokMSA_id:75962 Pseudomonas sp. STB17 AY162140
prokMSA_id:76313 Pseudomonas putida KT2440 section 2 of 21 of the complete ge
prokMSA_id:76537 Pseudomonas sp. BW11M1 
prokMSA_id:76538 Pseudomonas putida KT2440 section 18 of 21 of the complete g
prokMSA_id:77022 Pseudomonas putida KT2440 section 1 of 21 of the complete ge
prokMSA_id:78525 Pseudomonas viridiflava strain LPPA 144 AY180968
prokMSA_id:78571 Pseudomonas rhizosphaerae complete 
prokMSA_id:78774 Pseudomonas viridiflava strain LPPA 139 AY180967
prokMSA_id:78852 Pseudomonas viridiflava strain CECT 458 AY180972
prokMSA_id:78951 Pseudomonas viridiflava strain LPPA 84 AY180971
prokMSA_id:84327 Pseudomonas putida strain:KF703
prokMSA_id:84758 Pseudomonas sp. 4/11SKenr22# 
prokMSA_id:85824 Pseudomonas putida complete strain:NA3
prokMSA_id:86435 Pseudomonas putida strain:KF715
prokMSA_id:89243 Pseudomonas sp. KL28 AY324319
prokMSA_id:89310 Pseudomonas sp. KR9 AY327816
prokMSA_id:91631 Pseudomonas sp. K2 AF532866
prokMSA_id:91834 Pseudomonas filiscindens ; -23S intergenic spacer complete ;
prokMSA_id:92897 Pseudomonas sp. WSCIII AY344806
prokMSA_id:93278 Pseudomonas sp. An7 isolate An7 AJ551146
prokMSA_id:93773 Pseudomonas lutea strain OK2 AY364537
prokMSA_id:98066 Pseudomonas putida AY395005
2.28.3.13.13.9343 OTU 2 seqs
prokMSA_id:26354 Cellvibrio mixtus subsp. mixtus ACM 2601 
prokMSA_id:48811 Cellvibrio mixtus subsp. mixtus strain ACM 2603
2.28.3.13.13.9422 OTU 1 seq
prokMSA_id:30985 Cellvibrio sp. R4079 
2.28.3.13.13.9469 OTU 1 seq
prokMSA_id:37108 sheep mite Llangefni 52 
2.28.3.13.13.9493 OTU 1 seq
prokMSA_id:66813 Pseudomonas sp. dcm7B 
2.28.3.13.13.9509 OTU 1 seq
prokMSA_id:27805 clone Car16fa 
2.28.3.13.13.9553 OTU 1 seq
prokMSA_id:52677 Cellvibrio sp. R4001 
2.28.3.13.14 PSEUDOMONAS_SUBGROUP 334 seqs
2.28.3.13.14.1 PS.AMYGDALI_SUBGROUP 140 seqs
2.28.3.13.14.1.8209 OTU 2 seqs
prokMSA_id:65567 yard-trimming-compost clone S-23 
prokMSA_id:76301 gamma clone JG37-AG-122
2.28.3.13.14.1.8263 OTU 1 seq
prokMSA_id:40180 Pseudomonas migulae 
2.28.3.13.14.1.8433 OTU 88 seqs
prokMSA_id:8611 Pseudomonas caricapapayae ATCC 33615
prokMSA_id:8613 Pseudomonas PsJ str. PsJ
prokMSA_id:8614 Pseudomonas PsG str. PsG
prokMSA_id:8615 Pseudomonas PsE str. PsE
prokMSA_id:8616 Pseudomonas PsD str. PsD
prokMSA_id:8617 Pseudomonas PsB str. PsB
prokMSA_id:8618 Pseudomonas PsA str. PsA
prokMSA_id:8620 Pseudomonas corrugata ATCC 29736
prokMSA_id:8622 Pseudomonas brassicacearum str. DBK11 CFBP 11706
prokMSA_id:8639 Pseudomonas syringae subsp. syringae str. pathovar reference
prokMSA_id:8641 Pseudomonas J1 str. J1
prokMSA_id:8648 Pseudomonas syringae ATCC 13522
prokMSA_id:8653 Pseudomonas mandelii CIP 105273
prokMSA_id:8658 Pseudomonas meliae MAFF 301463
prokMSA_id:8674 Pseudomonas PsI str. PsI
prokMSA_id:8675 Pseudomonas PsH str. PsH
prokMSA_id:8680 Pseudomonas brassicacearum str. NFM421 CFBP 11874
prokMSA_id:8681 Pseudomonas thivervalensis str. SBK26 CFBP 11261
prokMSA_id:8690 Pseudomonas DhA-91 str. DhA-91
prokMSA_id:8697 str. 35L
prokMSA_id:8702 Pseudomonas aureofaciens DSM 6698
prokMSA_id:8741 Pseudomonas chlororaphis IFO 3904
prokMSA_id:16541 Pseudomonas syringae pv. phaseolicola 
prokMSA_id:17462 Pseudomonas migulae 
prokMSA_id:19236 Pseudomonas lini 
prokMSA_id:19470 Pseudomonas sp. NZ017 
prokMSA_id:20085 Pseudomonas sp. MG1 
prokMSA_id:20629 Pseudomonas syringae pv. broussonetiae 
prokMSA_id:20653 Pseudomonas sp. CM1'A2 strain CM1'A2
prokMSA_id:21916 Pseudomonas fluorescens strain F113
prokMSA_id:22611 Pseudomonas sp. PITR2 strain PITR2
prokMSA_id:24541 Pseudomonas sp. SMCC B0333 
prokMSA_id:26680 Pseudomonas fluorescens strain Q2-87
prokMSA_id:30745 Pseudomonas sp. LAB-23 
prokMSA_id:35287 Pseudomonas kilonensis strain 520-20
prokMSA_id:35650 Pseudomonas syringae 
prokMSA_id:37569 Pseudomonas sp. cb3 
prokMSA_id:37605 Pseudomonas fluorescens strain Biotype F
prokMSA_id:38949 Pseudomonas sp. Q65c-80 strain Q65c-80
prokMSA_id:38968 P.chlororaphis strain DSM 50083T 
prokMSA_id:42258 Pseudomonas syringae pv. mori 
prokMSA_id:43042 Pseudomonas syringae pv. glycinea 
prokMSA_id:43071 Pseudomonas sp. isolate EK1
prokMSA_id:43799 Pseudomonas syringae pv. eriobotryae 
prokMSA_id:45704 Pseudomonas syringae pv. myricae 
prokMSA_id:50915 Pseudomonas brassicacearum strain 520-1
prokMSA_id:51252 Pseudomonas sp. isolate ON1
prokMSA_id:52123 Pseudomonas syringae pv. tagetis 
prokMSA_id:52266 Pseudomonas sp. Q37-87 strain Q37-87
prokMSA_id:53538 Pseudomonas chlororaphis 
prokMSA_id:58730 Pseudomonas sp. 9-1 
prokMSA_id:60339 clone Nap14 
prokMSA_id:61845 gamma clone CLi21 
prokMSA_id:63915 Pseudomonas congelans strain DSM 14939T
prokMSA_id:63918 Pseudomonas tremae strain CFBP 6111T
prokMSA_id:63919 Pseudomonas cannabina strain CFBP 2341T
prokMSA_id:69781 Pseudomonas caricapapayae 
prokMSA_id:69974 Pseudomonas aureofaciens 
prokMSA_id:70054 Pseudomonas sp. GB13 
prokMSA_id:70756 Pseudomonas chlororaphis isolate ICMP 13610; NRRL B-1576
prokMSA_id:77306 Pseudomonas sp. New10530 
prokMSA_id:77313 Pseudomonas sp. gs14 
prokMSA_id:77337 Pseudomonas sp. S55-6 
prokMSA_id:77356 Pseudomonas sp. 34K4 
prokMSA_id:77373 Pseudomonas sp. GS61 
prokMSA_id:77380 Pseudomonas sp. S23-11 
prokMSA_id:77396 Pseudomonas sp. 28R14a 
prokMSA_id:77402 Pseudomonas sp. GS49 
prokMSA_id:77405 Pseudomonas sp. S57-2 
prokMSA_id:77460 Pseudomonas sp. S67-2 
prokMSA_id:77463 Pseudomonas sp. 34t20 
prokMSA_id:77468 Pseudomonas sp. New10529 
prokMSA_id:77477 Pseudomonas sp. gs7 
prokMSA_id:77482 Pseudomonas sp. S67-3 
prokMSA_id:79193 Pseudomonas sp. Ps 1-2 
prokMSA_id:81754 Pseudomonas mandelii 
prokMSA_id:82755 Pseudomonas syringae pv. pisi 
prokMSA_id:83026 Pseudomonas sp. BTs10022 
prokMSA_id:83047 Pseudomonas sp. BE1dil 
prokMSA_id:83510 Pseudomonas chlororaphis 
prokMSA_id:83659 Pseudomonas sp. SE22#2 
prokMSA_id:83726 Pseudomonas sp. SE7#1 
prokMSA_id:84130 Pseudomonas sp. BE3dil 
prokMSA_id:84597 Pseudomonas sp. BG2dil 
prokMSA_id:84747 Pseudomonas sp. WE7#1b 
prokMSA_id:85041 Pseudomonas sp. '11/20CMC control' 
prokMSA_id:85772 Pseudomonas sp. WG22#2 
prokMSA_id:86377 Pseudomonas sp. R1enr 
2.28.3.13.14.1.8476 OTU 1 seq
prokMSA_id:24053 gamma clone R58 
2.28.3.13.14.1.8635 OTU 1 seq
prokMSA_id:22832 Pseudomonas putida 
2.28.3.13.14.1.8670 OTU 1 seq
prokMSA_id:35948 NWCu007 
2.28.3.13.14.1.8679 OTU 1 seq
prokMSA_id:79355 clone ZA3412c 
2.28.3.13.14.1.8703 OTU 1 seq
prokMSA_id:81842 Beggiatoa sp. AA5A 
2.28.3.13.14.1.8853 OTU 3 seqs
prokMSA_id:8637 Pseudomonas cichorii str. PC 1 LMG 2162
prokMSA_id:8638 Pseudomonas cichorii str. PC 1 ATCC 10857
prokMSA_id:30292 Pseudomonas cichorii isolate ICMP 5707; ATCC 10857
2.28.3.13.14.1.8856 OTU 3 seqs
prokMSA_id:31704 marine isolate LQ-2001
prokMSA_id:62941 Leella ganghwensis strain JC2044 AY130994
prokMSA_id:70229 Leella ganghwensis strain JC2045 
2.28.3.13.14.1.8883 OTU 1 seq
prokMSA_id:37630 gamma MERTZ_2CM_253 
2.28.3.13.14.1.9020 OTU 1 seq
prokMSA_id:50734 marine ZD0433 
2.28.3.13.14.1.9028 OTU 7 seqs
prokMSA_id:8642 str. S2
prokMSA_id:36542 Pseudomonas sp. 'FSL D1-045' 
prokMSA_id:52524 Pseudomonas sp. 'FSL D1-024' 
prokMSA_id:60331 clone Phe13 
prokMSA_id:60343 clone Glu3 
prokMSA_id:76514 Pseudomonas sp. BHP7-11 
prokMSA_id:79231 Pseudomonas sp. Ps 9-14 
2.28.3.13.14.1.9044 OTU 1 seq
prokMSA_id:67771 isolate C1_B045 
2.28.3.13.14.1.9137 OTU 1 seq
prokMSA_id:27856 gamma MERTZ_2CM_218 
2.28.3.13.14.1.9240 OTU 10 seqs
prokMSA_id:23945 Pseudomonas sp. PGNR1 strain PGNR1 AJ417071
prokMSA_id:29949 Pseudomonas fluorescens strain CHA0 AJ278812
prokMSA_id:31990 Pseudomonas sp. NZ102 AY014820
prokMSA_id:40472 Pseudomonas sp. NZ101 
prokMSA_id:44937 Pseudomonas sp. NZ097 
prokMSA_id:51887 Pseudomonas sp. PF strain PF AJ417073
prokMSA_id:58732 Pseudomonas sp. 7-1 
prokMSA_id:66228 Pseudomonas sp. HS21 
prokMSA_id:71021 Pseudomonas fluorescens strain ATCC 17386 
prokMSA_id:81594 Pseudomonas fluorescens strain MM-B16 
2.28.3.13.14.1.9267 OTU 5 seqs
prokMSA_id:31850 Pseudomonas syringae pv. theae 
prokMSA_id:41675 Pseudomonas syringae 
prokMSA_id:47854 Pseudomonas syringae pv. actinidiae 
prokMSA_id:50673 Pseudomonas syringae pv. maculicola 
prokMSA_id:50962 Pseudomonas syringae pv. morsprunorum 
2.28.3.13.14.1.9310 OTU 1 seq
prokMSA_id:75209 Pseudomonas sp. AC-167 
2.28.3.13.14.1.9329 OTU 1 seq
prokMSA_id:36080 gamma MERTZ_2CM_255 
2.28.3.13.14.1.9399 OTU 1 seq
prokMSA_id:22889 alpha clone BIji17
2.28.3.13.14.1.9500 OTU 1 seq
prokMSA_id:30992 Cellvibrio vulgaris NCIMB 8633 
2.28.3.13.14.1.9620 OTU 8 seqs
prokMSA_id:8643 clone OCS5
prokMSA_id:19508 marine ZD0107 
prokMSA_id:33605 gamma KTc1112 
prokMSA_id:40069 gamma Arctic97A-18 
prokMSA_id:45850 OCS5 AF173975
prokMSA_id:53597 gamma MB12G02 and 23S genes 
prokMSA_id:54017 EBAC27G05 and 23S genes 
prokMSA_id:69857 gamma CHAB-III-1 5' 
2.28.3.13.14.2 PS.TOLAASII_SUBGROUP 184 seqs
2.28.3.13.14.2.8175 OTU 1 seq
prokMSA_id:21505 Pseudomonas cellulosa 
2.28.3.13.14.2.8212 OTU 1 seq
prokMSA_id:8712 clone ACE-4
2.28.3.13.14.2.8294 OTU 1 seq
prokMSA_id:85548 clone 12 
2.28.3.13.14.2.8295 OTU 1 seq
prokMSA_id:47749 ECS30 
2.28.3.13.14.2.8323 OTU 1 seq
prokMSA_id:70607 isolate C1_B013 
2.28.3.13.14.2.8338 OTU 33 seqs
prokMSA_id:8666 Pseudomonas fluorescens IAM 12022
prokMSA_id:8668 str. BD4-3
prokMSA_id:8669 str. NKB1
prokMSA_id:8710 Pseudomonas fluorescens
prokMSA_id:8716 str. BD6-5
prokMSA_id:19748 Pseudomonas tolaasii strain NCPPB 1116 
prokMSA_id:21571 Pseudomonas tolaasii 
prokMSA_id:26547 Pseudomonas fluorescens strain ATCC 13525 
prokMSA_id:27387 Pseudomonas sp. E102 
prokMSA_id:29039 Pseudomonas fluorescens strain ATCC 17556 
prokMSA_id:33184 Pseudomonas fluorescens strain Biotype A
prokMSA_id:37361 Pseudomonas tolaasii strain NCPPB 2325 
prokMSA_id:37579 Pseudomonas fluorescens strain Biotype G
prokMSA_id:38915 Pseudomonas sp. NZ124 
prokMSA_id:42961 Pseudomonas tolaasii 
prokMSA_id:46670 Pseudomonas sp. G2 
prokMSA_id:48111 Pseudomonas synxantha 
prokMSA_id:50836 Pseudomonas tolaasii strain NCPPB 741 
prokMSA_id:52401 Pseudomonas sp. NZ106 
prokMSA_id:59919 gamma clone ccs242 
prokMSA_id:60448 Pseudomonas sp. Fa3 
prokMSA_id:63913 Pseudomonas trivialis strain DSM 14937T
prokMSA_id:63914 Pseudomonas poae strain DSM 14936T
prokMSA_id:67535 Pseudomonas costantinii 
prokMSA_id:71567 Pseudomonas fluorescens isolate ICMP 3512; ATCC 13525; NCIB 
prokMSA_id:72253 Pseudomonas sp. NZ006 
prokMSA_id:73710 Pseudomonas sp. 'FSL R1-195' 
prokMSA_id:74047 Pseudomonas tolaasii strain NCPPB 2192 
prokMSA_id:74265 Pseudomonas sp. NZ031 
prokMSA_id:77892 Pseudomonas sp. TUT1023 
prokMSA_id:79739 Arctic sea ice ARK9971 
prokMSA_id:84439 Pseudomonas reactans 
prokMSA_id:86068 Pseudomonas sp. SE22#1a 
2.28.3.13.14.2.8419 OTU 2 seqs
prokMSA_id:30797 Car177 
prokMSA_id:74502 Car166 
2.28.3.13.14.2.8545 OTU 1 seq
prokMSA_id:47070 gamma clone R140 
2.28.3.13.14.2.8551 OTU 1 seq
prokMSA_id:25219 gamma MERTZ_2CM_40 
2.28.3.13.14.2.8561 OTU 1 seq
prokMSA_id:45357 Pseudomonas sp. B65 
2.28.3.13.14.2.8601 OTU 8 seqs
prokMSA_id:8732 Pseudomonas marginalis str. pathovar reference strain LMG 22
prokMSA_id:8733 Pseudomonas marginalis str. pathovar reference strain ATCC 1
prokMSA_id:8734 Pseudomonas KB700A str. KB700A
prokMSA_id:28467 Pseudomonas sp. SCD-7 AF448041
prokMSA_id:33387 Pseudomonas sp. SV23 
prokMSA_id:35880 Pseudomonas veronii 
prokMSA_id:49007 Pseudomonas marginalis 
prokMSA_id:78991 Pseudomonas sp. isolate 4f57 
2.28.3.13.14.2.8615 OTU 2 seqs
prokMSA_id:27446 GR-Sh1-163 c GR-Sh1-lone AJ296560
prokMSA_id:66956 Pseudomonas sp. NMX 
2.28.3.13.14.2.8687 OTU 14 seqs
prokMSA_id:8685 Pseudomonas putida NCIMB 9816. D86000
prokMSA_id:8788 Pseudomonas putida ATCC 17522. D85995
prokMSA_id:24808 Pseudomonas putida strain ATCC 17472 
prokMSA_id:32635 Pseudomonas corrugata SB4 
prokMSA_id:33516 Pseudomonas putida strain Biotype B
prokMSA_id:40738 Pseudomonas sp. LAB-36 
prokMSA_id:43226 Pseudomonas sp. LAB-08 AB051694
prokMSA_id:51775 Pseudomonas sp. NZ039 AY014808
prokMSA_id:52364 Pseudomonas sp. LAB-26 
prokMSA_id:75222 gamma clone JG34-KF-115
prokMSA_id:76308 gamma clone GuBH2-AG-52 AJ519660
prokMSA_id:78081 gamma clone:APe4_13 AB074630
prokMSA_id:85385 Antarctic R-9113 strain R-9113
prokMSA_id:93297 Pseudomonas sp. 'ARDRA PS2' AY364086
2.28.3.13.14.2.8708 OTU 19 seqs
prokMSA_id:8665 Pseudomonas fluorescens IAM 12022
prokMSA_id:8714 Pseudomonas rhodesiae str. CFML 92-111 CIP 104664 . AB021410
prokMSA_id:8723 Azospirillum sp. str. AM-53 DSM 1727
prokMSA_id:8726 Azospirillum sp
prokMSA_id:8767 Pseudomonas azotoformans IAM 1603 . D84009
prokMSA_id:16371 Pseudomonas sp. AH2 
prokMSA_id:43326 Pseudomonas sp. NZ052 
prokMSA_id:61816 gamma clone CLs104 
prokMSA_id:67413 Pseudomonas salomonii 
prokMSA_id:70929 Pseudomonas azotoformans complete D84009
prokMSA_id:72372 Pseudomonas fluorescens complete D84013
prokMSA_id:72676 Glacial ice M3C4.1K-B34 AF479375
prokMSA_id:73522 Pseudomonas sp. NZ113 
prokMSA_id:73574 Pseudomonas sp. NZ060 
prokMSA_id:73740 Pseudomonas sp. NZ111 
prokMSA_id:76605 gamma clone JG36-TzT-72
prokMSA_id:83167 Pseudomonas sp. clone IV 
prokMSA_id:85062 Pseudomonas sp. MWH1 
prokMSA_id:90111 Pseudomonas sp. AZ22R11 AY308049
2.28.3.13.14.2.8737 OTU 1 seq
prokMSA_id:47332 Oleispira antarcticam strain RB-9
2.28.3.13.14.2.8780 OTU 1 seq
prokMSA_id:20181 GR-296.II.89 clone GR-296.II.89
2.28.3.13.14.2.8805 OTU 1 seq
prokMSA_id:62458 Gamma HTCC153 
2.28.3.13.14.2.8809 OTU 1 seq
prokMSA_id:17947 gamma hs2_55 
2.28.3.13.14.2.8995 OTU 1 seq
prokMSA_id:53457 Pseudomonas sp. ML-120 
2.28.3.13.14.2.9175 OTU 9 seqs
prokMSA_id:8720 Pseudomonas tolaasii ATCC 33618
prokMSA_id:8721 str. NKB2
prokMSA_id:8769 ACAM 213
prokMSA_id:8770 Pseudomonas IC038 str. IC038
prokMSA_id:33806 Pseudomonas tolaasii strain NZ027 
prokMSA_id:35009 Pseudomonas tolaasii strain NZ032 
prokMSA_id:52734 Pseudomonas extremorientalis 
prokMSA_id:70883 Pseudomonas tolaasii D84028
prokMSA_id:79709 Arctic sea ice ARK10061 
2.28.3.13.14.2.9221 OTU 71 seqs
prokMSA_id:8672 Pseudomonas veronii str. CFML 92-134 CIP 104663
prokMSA_id:8678 Pseudomonas A2 str. A2
prokMSA_id:8679 Pseudomonas KA2 str. KA2
prokMSA_id:8686 Pseudomonas fluorescens DSM 50108
prokMSA_id:8687 Pseudomonas fluorescens NCIMB 9815
prokMSA_id:8688 Pseudomonas orientalis str. CFML 96-170
prokMSA_id:8689 Pseudomonas cedrella str. CFML 96-198
prokMSA_id:8695 Pseudomonas H1 str. H1
prokMSA_id:8698 Pseudomonas 'Shk 1' str. Shk 1
prokMSA_id:8699 Pseudomonas DSM12877 str. PS+ DSM 12877
prokMSA_id:8703 str. BD7-5
prokMSA_id:8704 str. 10-12.H
prokMSA_id:8705 str. 4-5.l
prokMSA_id:8706 str. 6-13.J
prokMSA_id:8707 Pseudomonas rhodesiae str. CFML 92-111 CIP 104664
prokMSA_id:8709 str. 150
prokMSA_id:8711 Pseudomonas IpA-92 str. IpA-92
prokMSA_id:8727 str. BD5-14
prokMSA_id:8729 str. 9.j
prokMSA_id:8730 str. JTB247
prokMSA_id:8765 Pseudomonas gessardii CIP 105469
prokMSA_id:8773 str. BD3-15
prokMSA_id:8775 Pseudomonas synxantha IAM 12356
prokMSA_id:8778 Pseudomonas libaniensis CIP 105460
prokMSA_id:16465 Pseudomonas fluorescens strain Biotype C
prokMSA_id:16810 Pseudomonas fluorescens 
prokMSA_id:17216 sheep mite Llangefni 3 
prokMSA_id:18648 sheep mite Llangefni 15 
prokMSA_id:19517 sheep mite Welshpool 1 
prokMSA_id:19794 Rape rhizosphere cse074 
prokMSA_id:22349 Pseudomonas grimontii 
prokMSA_id:23585 Pseudomonas sp. 5N1-1 
prokMSA_id:24702 Pseudomonas fluorescens strain Biotype B
prokMSA_id:25298 sheep mite Welshpool 49 
prokMSA_id:26170 Pseudomonas sp. NZ024 
prokMSA_id:26453 Iron-reducing JLN-2 
prokMSA_id:27133 Pseudomonas fluorescens bv. G 
prokMSA_id:29971 Pseudomonas sp. Circle strain Circle
prokMSA_id:32498 Pseudomonas sp. 'FSL D1-015' 
prokMSA_id:32516 Pseudomonas sp. PM-2001 
prokMSA_id:32794 Pseudomonas sp. NZ007 
prokMSA_id:32814 KF/GS-JG36-13 
prokMSA_id:34487 sheep mite Welshpool 13 
prokMSA_id:37559 sheep mite Welshpool 46 
prokMSA_id:41990 Pseudomonas fluorescens bv. C 
prokMSA_id:43407 Pseudomonas sp. CM10-2 
prokMSA_id:44427 Pseudomonas brennerii complete 
prokMSA_id:44550 sheep mite Llangefni 6 
prokMSA_id:47203 Pseudomonas fluorescens strain ATCC 49642 
prokMSA_id:48560 Pseudomonas veronii strain:INA06
prokMSA_id:50036 Agricultural soil clone SC-I-88 
prokMSA_id:50165 Pseudomonas fluorescens 
prokMSA_id:50895 Pseudomonas sp. NZ014 
prokMSA_id:51863 Pseudomonas sp. CM10-1 
prokMSA_id:59301 Pseudomonas veronii UFZ-B549 
prokMSA_id:60445 Pseudomonas sp. Fa8 
prokMSA_id:62875 Pseudomonas rhodesiae isolate PF1
prokMSA_id:63912 Pseudomonas fulgida strain DSM 14938T
prokMSA_id:66023 Pseudomonas rhodesiae strain KK1 complete 
prokMSA_id:68456 Symbiont cf. Pseudomonas of Acromyrmex octospinosus 
prokMSA_id:68653 clone KRA30-19 
prokMSA_id:69848 Pseudomonas fluorescens strain ATCC 17574 
prokMSA_id:72334 clone MB-A2-106 
prokMSA_id:74186 Pseudomonas fluorescens strain ATCC 17397 
prokMSA_id:75129 Swine manure 37-8 
prokMSA_id:77564 Pseudomonas sp. 10569 
prokMSA_id:79157 Pseudomonas antarctica strain CMS 35T
prokMSA_id:79186 Pseudomonas proteolytica strain CMS 64T
prokMSA_id:79601 Pseudomonas meridiana strain CMS 38T
prokMSA_id:81815 Pseudomonas veronii 
prokMSA_id:84113 Antarctic R-7616 strain R-7616
2.28.3.13.14.2.9231 OTU 1 seq
prokMSA_id:81675 clone KD3-89 
2.28.3.13.14.2.9243 OTU 1 seq
prokMSA_id:8717 Pseudomonas tolaasii LMG 2342
2.28.3.13.14.2.9331 OTU 1 seq
prokMSA_id:48531 Pseudomonas sp. CL-2 5'- 
2.28.3.13.14.2.9334 OTU 1 seq
prokMSA_id:83261 clone 158 
2.28.3.13.14.2.9366 OTU 5 seqs
prokMSA_id:8673 Pseudomonas MBIC3963 str. MBIC3963
prokMSA_id:29705 Arctic seawater R7366 
prokMSA_id:68916 Antarctic seawater R7375 
prokMSA_id:73068 Arctic seawater R7078 
prokMSA_id:79706 Arctic sea ice associated ARK10142 
2.28.3.13.14.2.9462 OTU 1 seq
prokMSA_id:47143 gamma ARCT1-18 
2.28.3.13.14.2.9467 OTU 1 seq
prokMSA_id:17958 gamma Arctic96B-9 
2.28.3.13.14.2.9487 OTU 1 seq
prokMSA_id:42421 marine pN1-38
2.28.3.13.14.2.9548 OTU 1 seq
prokMSA_id:45454 clone LRS6
2.28.3.13.14.7 PS.TAETROLENS_SUBGROUP 6 seqs
2.28.3.13.14.7.8755 OTU 1 seq
prokMSA_id:73856 Pseudomonas sp. isolate SK-1-3-1
2.28.3.13.14.7.9172 OTU 5 seqs
prokMSA_id:41050 Pseudomonas sp. E-3 
prokMSA_id:73611 Pseudomonas sp. 'FSL D1-022' 
prokMSA_id:81514 Pseudomonas fragi 
prokMSA_id:82986 Pseudomonas sp. WR7#2 
prokMSA_id:89274 Pseudomonas syringae isolate Lz4W AJ576247
2.28.3.13.14.9 PS.AZOTOFORMANS_SUBGROUP 4 seqs
2.28.3.13.14.9.8454 OTU 1 seq
prokMSA_id:46424 gamma Arctic96A-14 
2.28.3.13.14.9.8922 OTU 1 seq
prokMSA_id:43655 clone KS30 
2.28.3.13.14.9.9041 OTU 1 seq
prokMSA_id:77535 Symbiont LP3 of Lyrodus pedicellatus 
2.28.3.13.14.9.9095 OTU 1 seq
prokMSA_id:44307 gamma MERTZ_21CM_217 
2.28.3.13.15 PS.AGARICI_SUBGROUP 5 seqs
2.28.3.13.15.8200 OTU 1 seq
prokMSA_id:21399 gamma kpj394f 
2.28.3.13.15.8486 OTU 1 seq
prokMSA_id:45928 clone t051 
2.28.3.13.15.8896 OTU 1 seq
prokMSA_id:86422 gamma clone ST01-SN4A 
2.28.3.13.15.9046 OTU 1 seq
prokMSA_id:8785 clone EKHO-14
2.28.3.13.15.9606 OTU 1 seq
prokMSA_id:8791 clone BURTON-45
2.28.3.16 MRB.HYDROCARBONOCLASTICUS_GROUP 91 seqs
2.28.3.16.8170 OTU 1 seq
prokMSA_id:8811 Pseudomonas halophila DSM 3050
2.28.3.16.8327 OTU 1 seq
prokMSA_id:80231 Arctic sea ice associated ARK10148 
2.28.3.16.8333 OTU 1 seq
prokMSA_id:43550 antarctic soil clone bh8.50 
2.28.3.16.8413 OTU 1 seq
prokMSA_id:66917 clone SHA-37
2.28.3.16.8426 OTU 1 seq
prokMSA_id:8800 Marinobacter sp. str. IC022
2.28.3.16.8428 OTU 1 seq
prokMSA_id:8806 Marinobacter NK-1 str. NK-1
2.28.3.16.8448 OTU 1 seq
prokMSA_id:47061 ECS35 
2.28.3.16.8485 OTU 25 seqs
prokMSA_id:8809 Marinobacter DS40M8 str. DS40M8
prokMSA_id:16390 Marinobacter sp. Aplume1.1727a complete 
prokMSA_id:20197 Marine ATAM407_2035 
prokMSA_id:21222 Marinobacter aquaeolei 
prokMSA_id:22385 Marinobacter sp. NCE312 
prokMSA_id:26877 Marinobacter sp. 407-13 strain 407-13
prokMSA_id:31320 Marinobacter sp. Asw2.1747a complete 
prokMSA_id:31627 Marinobacter sp. Splume3.1825c complete 
prokMSA_id:47395 Marinobacter sp. Splume1.1802c complete 
prokMSA_id:48119 Marinobacter sp. Splume2.1814c complete 
prokMSA_id:48682 Marinobacter sp. Asw1.1741a complete AF212208
prokMSA_id:80393 clone ARKICE-88 
prokMSA_id:81723 Marinobacter sp. 3030dQ AY196982
prokMSA_id:82024 Arctic sea ice clone ARKXV/1-140 
prokMSA_id:82079 Arctic sea ice clone ARKXV/1-157 
prokMSA_id:83574 Marine arctic deep-sea FF7b 
prokMSA_id:83771 Marine arctic deep-sea FC10 
prokMSA_id:84236 Marine arctic deep-sea HF12 
prokMSA_id:84377 Marine arctic deep-sea FH8 
prokMSA_id:84428 Marine arctic deep-sea FC8a 
prokMSA_id:85559 Marine arctic deep-sea FB9 
prokMSA_id:85565 Marinobacter sp. 4301-10/2 isolate 4301-10/2
prokMSA_id:86527 Marine arctic deep-sea HK13 AJ557861
prokMSA_id:95295 Marinobacter sp. EPR 35 AY394884
prokMSA_id:95336 Marinobacter sp. EPR 21 AY394878
2.28.3.16.8484 OTU 1 seq
prokMSA_id:60385 Alteromonadaceae LA50 
2.28.3.16.8503 OTU 5 seqs
prokMSA_id:80459 Arctic sea ice ARK10244 
prokMSA_id:80672 clone ARKCH2Br2-12 
prokMSA_id:80774 clone ARKICE-18 
prokMSA_id:81478 Arctic sea ice clone ARKXV/1-103 
prokMSA_id:81583 Marinobacter sp. ANT8277 
2.28.3.16.8519 OTU 1 seq
prokMSA_id:60391 Alteromonadaceae LA13 
2.28.3.16.8578 OTU 13 seqs
prokMSA_id:8801 Marinobacter sp. str. IC032. U85864
prokMSA_id:8819 Marinobacter PCOB-2 str. PCOB-2
prokMSA_id:8820 Marinobacter articus. AF148811
prokMSA_id:21327 Marinobacter sp
prokMSA_id:38286 GR-Sh1-128 clone GR-Sh1-128
prokMSA_id:45418 Marinobacter sp. 2sq31 strain 2sq31 AJ429499
prokMSA_id:59259 Marinobacter sp. 2Asq64 strain 2Asq64
prokMSA_id:71127 Marinobacter sp. ME108 
prokMSA_id:80143 Marinobacter sp. HS7 AB089803
prokMSA_id:80484 clone ARKICE-53 
prokMSA_id:80533 clone ARKDMS-57 
prokMSA_id:82214 Marinobacter lipolyticus 
prokMSA_id:91462 R10CA AY345358
2.28.3.16.8584 OTU 2 seqs
prokMSA_id:25426 Marinobacter sp. Trimyema-2 isolate 2
prokMSA_id:73167 Marinobacter lutaoensis 
2.28.3.16.8594 OTU 1 seq
prokMSA_id:66955 Marinobacter sp. SBS 
2.28.3.16.8606 OTU 2 seqs
prokMSA_id:79903 clone BTM28 
prokMSA_id:80244 clone BTM43 
2.28.3.16.8714 OTU 7 seqs
prokMSA_id:8807 Marinobacter aquaeolei str. VT8
prokMSA_id:8816 Marinobacter hydrocarbonoclasticus str. 179 ATCC 27132
prokMSA_id:8818 Marinobacter CAB str. CAB
prokMSA_id:8821 str. HTB148
prokMSA_id:60388 Alteromonadaceae LA34A 
prokMSA_id:75064 Marinobacter sp. R2 
prokMSA_id:80080 Marinobacter sp. HB7 
2.28.3.16.8767 OTU 1 seq
prokMSA_id:61967 Marinobacter-like sp. V4.MS.24 
2.28.3.16.8814 OTU 3 seqs
prokMSA_id:8696 str. MBIC3958. AB020600
prokMSA_id:8810 str. MBIC3957. AB021682
prokMSA_id:24515 Hahella chejuensis strain KCTC 2396 
2.28.3.16.8835 OTU 1 seq
prokMSA_id:80169 clone ARKDMS-76 
2.28.3.16.8944 OTU 1 seq
prokMSA_id:24422 gamma clone R180 
2.28.3.16.8959 OTU 1 seq
prokMSA_id:60644 gamma clone AEGEAN_133 
2.28.3.16.9073 OTU 1 seq
prokMSA_id:8799 Flectobacillus sp. str. S36-Wgv1
2.28.3.16.9089 OTU 2 seqs
prokMSA_id:32995 gamma clone MPD-18 
prokMSA_id:45195 gamma clone MPD-50 
2.28.3.16.9122 OTU 1 seq
prokMSA_id:81942 Arctic sea ice clone ARKXV/1-96 
2.28.3.16.9239 OTU 5 seqs
prokMSA_id:79688 Arctic sea ice ARK10228 
prokMSA_id:79693 clone ARKIA-100 
prokMSA_id:79868 Arctic sea ice ARK10251 
prokMSA_id:79964 Arctic sea ice ARK10296 
prokMSA_id:82935 Antarctic R-9035 strain R-9035
2.28.3.16.9254 OTU 1 seq
prokMSA_id:37115 Marinobacter sp. Trimyema-1 isolate 1
2.28.3.16.9294 OTU 2 seqs
prokMSA_id:82957 Marine arctic deep-sea FE8 
prokMSA_id:84025 Marine arctic deep-sea HG11 
2.28.3.16.9380 OTU 1 seq
prokMSA_id:78569 Marinobacter excelentus strain KMM 3809 
2.28.3.16.9484 OTU 1 seq
prokMSA_id:20696 Marinobacter sp
2.28.3.16.9582 OTU 1 seq
prokMSA_id:27082 Marine NBF32 
2.28.3.16.9584 OTU 2 seqs
prokMSA_id:20468 Marinobacter sp. MR-1 
prokMSA_id:29755 Marinobacter sp. MR-6 
2.28.3.16.9636 OTU 1 seq
prokMSA_id:8805 Marinobacter ORGANIC-9
2.28.3.16.9635 OTU 1 seq
prokMSA_id:8803 Marinobacter sp. str. IC184
2.28.3.16.9633 OTU 1 seq
prokMSA_id:8802 Marinobacter sp. str. IC180
2.28.3.17 TCP.ROSEOPERSICINA_GROUP 13 seqs
2.28.3.17.8180 OTU 1 seq
prokMSA_id:47714 Gamma F8 
2.28.3.17.8483 OTU 3 seqs
prokMSA_id:8823 Curacaobacter baltica str. OS 140
prokMSA_id:73653 Rheinheimera baltica strain OSBAC5
prokMSA_id:83055 Marine HP1 
2.28.3.17.8502 OTU 1 seq
prokMSA_id:8824 str. SELECT-1
2.28.3.17.9370 OTU 3 seqs
prokMSA_id:8827 str. HTB021
prokMSA_id:8828 str. HTB019
prokMSA_id:55811 clone MB-A2-102 
2.28.3.17.9542 OTU 5 seqs
prokMSA_id:8825 str. HTB082
prokMSA_id:21087 clone p-261-o5 
prokMSA_id:24038 clone p-502-o2 
prokMSA_id:27315 sheep mite Llangefni 75 
prokMSA_id:33192 Alishewanella fetalis AF144407
2.28.3.18 COLWELLIA_GROUP 90 seqs
2.28.3.18.8196 OTU 1 seq
prokMSA_id:77803 clone 216 
2.28.3.18.8211 OTU 1 seq
prokMSA_id:8829 Colwellia maris str. ABE-1 JCM 10085
2.28.3.18.8222 OTU 1 seq
prokMSA_id:78196 clone 240 
2.28.3.18.8255 OTU 1 seq
prokMSA_id:81437 Antarctic sea ice clone ANTXI/4_14-151 
2.28.3.18.8266 OTU 1 seq
prokMSA_id:8850 Colwellia rossensis str. S51-Wgv1
2.28.3.18.8600 OTU 50 seqs
prokMSA_id:8836 Colwellia psychroerythrea ATCC 27364
prokMSA_id:8840 Colwellia psychroerythraea ACAM 604
prokMSA_id:8841 Colwellia psychroerythraea str. IC064
prokMSA_id:8843 Colwellia psychroerythrea ATCC 27364
prokMSA_id:36120 Colwellia psychroerythraea 
prokMSA_id:50180 Colwellia sp. 34H 
prokMSA_id:61116 Colwellia psychroerythraea 
prokMSA_id:66627 gamma clone 1-46 AY094497
prokMSA_id:79094 Gamma UMB8H AF505737
prokMSA_id:79163 Gamma UMB10B AF505738
prokMSA_id:79209 Gamma UMB7D AF505733
prokMSA_id:79265 Gamma UMB3E 
prokMSA_id:79426 Gamma UMB6B 
prokMSA_id:79516 Gamma UMB7C AF505732
prokMSA_id:79584 Gamma UMB7A 
prokMSA_id:80356 Arctic sea ice ARK10102 
prokMSA_id:80357 clone ARKICE-3 
prokMSA_id:80364 clone ARKICE-28 
prokMSA_id:80708 clone ARKIA-71 
prokMSA_id:80830 clone ARKIA-94 
prokMSA_id:80889 clone ARKDMS-61 AF468254
prokMSA_id:81146 Psychrobacter sp. ARK10133 
prokMSA_id:81177 Colwellia rossensis strain ANT8228 
prokMSA_id:81289 Colwellia sp. ANT9196 
prokMSA_id:81569 Colwellia sp. ANT9187 
prokMSA_id:81575 Colwellia rossensis strain ANT9246 
prokMSA_id:81600 Antarctic sea ice clone ANTXI/4_14-31 
prokMSA_id:81615 Antarctic sea ice clone ANTXI/4_14-79 
prokMSA_id:81632 Colwellia sp. ANT9381 
prokMSA_id:81641 Colwellia rossensis strain ANT9250 
prokMSA_id:81643 Colwellia sp. ANT9407 
prokMSA_id:81695 Colwellia rossensis strain ANT9228 
prokMSA_id:81749 Colwellia rossensis strain ANT9203 
prokMSA_id:81807 Colwellia rossensis strain ANT9279 
prokMSA_id:81818 Colwellia sp. ANT8203 
prokMSA_id:82145 Roseobacter sp. ANT8230 AY167251
prokMSA_id:82218 Colwellia sp. ANT9176 AY167291
prokMSA_id:82290 Colwellia rossensis strain ANT9247 
prokMSA_id:82300 Colwellia rossensis strain ANT8283 
prokMSA_id:82309 Colwellia rossensis strain ANT9271 
prokMSA_id:82359 Colwellia sp. ANT9207 
prokMSA_id:82428 Colwellia sp. ANT9037 AY167272
prokMSA_id:82439 Colwellia sp. ANT8258 
prokMSA_id:82465 Colwellia sp. ANT8279 
prokMSA_id:94879 clone A84 complete AY373421
prokMSA_id:95362 clone B98 AY375079
prokMSA_id:96457 clone D12 AY375136
prokMSA_id:97399 clone B136 AY375086
prokMSA_id:97603 Colwellia piezophila strain:Y223G AB094412
prokMSA_id:97654 clone B344 AY375071
2.28.3.18.8753 OTU 4 seqs
prokMSA_id:35914 Halophilic TAG C7 
prokMSA_id:59885 Idiomarina baltica strain OS145
prokMSA_id:60389 Idiomarina sp. LA26 
prokMSA_id:73468 Slope strain DIII1c 
2.28.3.18.8808 OTU 1 seq
prokMSA_id:8834 str. 62.f
2.28.3.18.8819 OTU 8 seqs
prokMSA_id:8832 unnamed organism
prokMSA_id:9054 str. BD1-9
prokMSA_id:9055 str. BD4-11
prokMSA_id:9056 str. BD6-1
prokMSA_id:67499 Idiomarina loihiensis strain 53 
prokMSA_id:70055 Gamma KT11ds7 
prokMSA_id:76315 Gamma HY-54 isolate HY-54 AJ294341
prokMSA_id:84841 Marine arctic deep-sea FI8 
2.28.3.18.8825 OTU 1 seq
prokMSA_id:8838 Colwellia -like sp. IC169 str. IC169
2.28.3.18.8900 OTU 1 seq
prokMSA_id:8864 Pele's Vents clone PVB_54
2.28.3.18.8923 OTU 2 seqs
prokMSA_id:26868 Thalassomonas viridans strain XOM5 CECT 5082
prokMSA_id:36824 Thalassomonas viridans strain XOM25T CECT 5083T
2.28.3.18.8928 OTU 1 seq
prokMSA_id:44150 sp. Crater Lake isolate 11C1
2.28.3.18.9069 OTU 1 seq
prokMSA_id:8833 clone 1_20
2.28.3.18.9102 OTU 1 seq
prokMSA_id:45973 Marine KM231 
2.28.3.18.9132 OTU 1 seq
prokMSA_id:8854 marine snow associated clone agg53
2.28.3.18.9203 OTU 1 seq
prokMSA_id:81968 Gamma JC2041 
2.28.3.18.9209 OTU 1 seq
prokMSA_id:24004 Colwellia sp. clone MERTZ_0CM_312 
2.28.3.18.9402 OTU 2 seqs
prokMSA_id:43155 Alteromonas sp. KT1101 AF235128
prokMSA_id:76778 Alteromonadaceae SN-1009 
2.28.3.18.9407 OTU 1 seq
prokMSA_id:46300 Colwellia sp. clone MERTZ_0CM_122 
2.28.3.18.9445 OTU 2 seqs
prokMSA_id:46123 Thalassomonas sp. MERTZ_0CM_55 AF424133
prokMSA_id:79736 Colwellia sp. HLC 
2.28.3.18.9472 OTU 1 seq
prokMSA_id:50517 Colwellia sp. MERTZ_2CM_50 
2.28.3.18.9486 OTU 1 seq
prokMSA_id:65942 Marine GK-2001 
2.28.3.18.9491 OTU 1 seq
prokMSA_id:79530 Gamma UMB6D 
2.28.3.18.9507 OTU 1 seq
prokMSA_id:80254 clone ARKCH2Br2-29 
2.28.3.18.9528 OTU 1 seq
prokMSA_id:81127 Antarctic sea ice clone ANTXI/13-90 
2.28.3.18.9550 OTU 1 seq
prokMSA_id:79936 clone ARKDMS-64 
2.28.3.18.9647 OTU 1 seq
prokMSA_id:37948 sp. Lake Bogoria isolate 10B1
2.28.3.19 ALTM.MACLEODII_GROUP 111 seqs
2.28.3.19.8167 OTU 1 seq
prokMSA_id:31197 Marine ATAM173a_5 
2.28.3.19.8174 OTU 1 seq
prokMSA_id:8878 str. SUR ATT
2.28.3.19.8188 OTU 1 seq
prokMSA_id:71399 Alteromonas macleodii 
2.28.3.19.8318 OTU 1 seq
prokMSA_id:84007 Gamma JC2042 
2.28.3.19.8363 OTU 4 seqs
prokMSA_id:80765 clone ARKICE-110 
prokMSA_id:81094 Antarctic sea ice clone ANTXI/4_14-132 
prokMSA_id:81840 Arctic sea ice clone ARKXV/1-106 
prokMSA_id:82034 Arctic sea ice clone ARKXV/1-127 
2.28.3.19.8374 OTU 3 seqs
prokMSA_id:56430 Marine gamma MKT112 
prokMSA_id:60314 Marine gamma MKT106 AB076561
prokMSA_id:60316 Marine gamma MKT89 AB076560
2.28.3.19.8410 OTU 1 seq
prokMSA_id:73940 gamma CHAB-XII-8 5' 
2.28.3.19.8511 OTU 2 seqs
prokMSA_id:8890 marine 
prokMSA_id:45496 Alteromonas sp. D 
2.28.3.19.8533 OTU 1 seq
prokMSA_id:42798 gamma 400m-ATT-24 complete 
2.28.3.19.8659 OTU 1 seq
prokMSA_id:19556 Facultatively oligotrophic PFO-2 
2.28.3.19.8695 OTU 1 seq
prokMSA_id:80428 clone ARKIA-34 
2.28.3.19.8762 OTU 1 seq
prokMSA_id:74015 gamma CHAB-V-29 5' 
2.28.3.19.8863 OTU 25 seqs
prokMSA_id:8891 Alteromonas macleodii DSM 6062
prokMSA_id:8894 Alteromonas macleodii
prokMSA_id:8899 str. HTC 34
prokMSA_id:8900 Alteromonas sp. str. KE10
prokMSA_id:8901 str. HTC036
prokMSA_id:8903 str. HTC032
prokMSA_id:23327 Alteromonas sp. AS-31 
prokMSA_id:26409 gamma Arctic95A-15 
prokMSA_id:33294 clone 318
prokMSA_id:35156 Alteromonas sp. AS-30 
prokMSA_id:44702 Alteromonas sp. 4BT 
prokMSA_id:45350 gamma CHAB-VI-3 5' 
prokMSA_id:46469 Alteromonas sp. 407-2 strain 407-2
prokMSA_id:55521 Alteromonas macleodii subsp. fijiensi strain medioatlantica
prokMSA_id:55687 Alteromonadaceae clone LAS-B5N 
prokMSA_id:60377 Alteromonadaceae PH5 
prokMSA_id:60990 Alteromonas marina strain SW-49 
prokMSA_id:60991 Alteromonas marina strain SW-47 
prokMSA_id:62501 Alteromonadaceae clone LAS-B15N 
prokMSA_id:63591 Alteromonas sp. SHY1-1 
prokMSA_id:71090 Alteromonas sp. ANSW2-2 
prokMSA_id:71568 Alteromonas macleodii subsp. abyssi strain HYD657
prokMSA_id:71626 Alteromonas alvinellae 
prokMSA_id:73913 Marine ATAM407_18 
prokMSA_id:83231 Gamma JC2043 
2.28.3.19.8908 OTU 1 seq
prokMSA_id:8868 clone HstpL30
2.28.3.19.8970 OTU 15 seqs
prokMSA_id:47176 Polar sea R9879 
prokMSA_id:79900 clone ARKIA-115 
prokMSA_id:80204 clone ARKDMS-52 
prokMSA_id:80755 Arctic sea ice ARK10047 
prokMSA_id:80881 Arctic sea ice ARK10218 AF468399
prokMSA_id:81035 Glaciecola sp. ANT9230 
prokMSA_id:81075 Glaciecola sp. ANT9183b 
prokMSA_id:81097 Glaciecola sp. ANT9218 
prokMSA_id:81148 Antarctic sea ice clone ANTXI/4_14-97 
prokMSA_id:81511 Glaciecola sp. ANT9094 
prokMSA_id:81573 Glaciecola sp. ANT9148 AY167285
prokMSA_id:81756 Antarctic sea ice clone ANTXI/4_14-32 
prokMSA_id:81831 Glaciecola sp. ANT9029 AY167271
prokMSA_id:82072 Glaciecola sp. ANT9177 AY167292
prokMSA_id:82435 Glaciecola sp. ANT8284 AY167270
2.28.3.19.8978 OTU 6 seqs
prokMSA_id:79998 Arctic sea ice ARK10128 
prokMSA_id:80404 Arctic sea ice ARK10130 
prokMSA_id:80564 Arctic sea ice ARK10108 
prokMSA_id:81949 Glaciecola punicea strain ANT9189 
prokMSA_id:82266 Glaciecola sp. ANT9258 AY167309
prokMSA_id:82306 Glaciecola sp. ANT9159 
2.28.3.19.8992 OTU 1 seq
prokMSA_id:8882 str. 400m ATT
2.28.3.19.9003 OTU 9 seqs
prokMSA_id:81210 Glaciecola sp. ANT9142 
prokMSA_id:81369 Glaciecola sp. ANT9061 
prokMSA_id:81376 Glaciecola sp. ANT9166 
prokMSA_id:81720 Glaciecola sp. ANT9133 
prokMSA_id:81743 Glaciecola sp. ANT9175 
prokMSA_id:81777 Glaciecola sp. ANT9081 
prokMSA_id:81795 Glaciecola sp. ANT9154 
prokMSA_id:82048 Glaciecola sp. ANT9085 
prokMSA_id:82405 Glaciecola sp. ANT9055 
2.28.3.19.9023 OTU 1 seq
prokMSA_id:8893 Alteromonas macleodii
2.28.3.19.9024 OTU 1 seq
prokMSA_id:8895 Alteromonas macleodii str. CH-460
2.28.3.19.9177 OTU 6 seqs
prokMSA_id:39858 Arctic seawater R7215 AJ293820
prokMSA_id:65357 Glaciecola sp. KMM 241 strain KMM 241 AJ488501
prokMSA_id:74198 Glaciecola sp. HA02 
prokMSA_id:79499 Gamma UMB8E 
prokMSA_id:88454 Glaciecola polaris strain strain LMG 21854 AJ548478
prokMSA_id:89023 Glaciecola gelidimarina strain LMG 21855 AJ548479
2.28.3.19.9194 OTU 1 seq
prokMSA_id:8873 Glaciecola pallidula str. IC079 ACAM 615
2.28.3.19.9230 OTU 1 seq
prokMSA_id:82404 Antarctic sea ice clone ANTXI/4_14-62 
2.28.3.19.9236 OTU 1 seq
prokMSA_id:8880 str. SUR ATT
2.28.3.19.9288 OTU 15 seqs
prokMSA_id:8874 str. 400m ATT
prokMSA_id:8877 str. SUR ATT
prokMSA_id:8879 str. DCM ATT
prokMSA_id:8883 str. DCM ATT
prokMSA_id:8884 str. 400m ATT
prokMSA_id:8885 str. 400m ATT
prokMSA_id:8892 Alteromonas macleodii
prokMSA_id:8896 Alteromonas macleodii str. CH-516
prokMSA_id:22311 Alteromonas sp. TO01 
prokMSA_id:26192 Alteromonas sp. 2c3 strain 2c3
prokMSA_id:62005 Alteromonas sp. V4.BE.32 
prokMSA_id:67709 Alteromonas sp. KC98716-13 
prokMSA_id:72274 Alteromonas sp. V4.ME.16 
prokMSA_id:73259 Polar sea R9875 
prokMSA_id:73896 Alteromonas sp. 253-19 strain 253-19 strain 253-19
2.28.3.19.9292 OTU 5 seqs
prokMSA_id:8866 Alteromonas macleodii. L10938
prokMSA_id:8875 str. DCM ATT
prokMSA_id:8876 str. SUR ATT
prokMSA_id:8881 str. 400m ATT
prokMSA_id:72384 Pseudoalteromonas sp. KT0812A AF239705
2.28.3.19.9501 OTU 1 seq
prokMSA_id:81621 Biphenyl-degrading BP-PH 
2.28.3.19.9562 OTU 1 seq
prokMSA_id:62499 Alteromonadaceae clone PH-B55N 
2.28.3.19.9575 OTU 1 seq
prokMSA_id:42742 gamma clone 33-FL26B99 
2.28.3.19.9625 OTU 1 seq
prokMSA_id:35256 marine complete strain:GY9501
2.28.3.19.9649 OTU 1 seq
prokMSA_id:8898 str. 214.6
2.28.3.20 PSEUDOALTEROMONAS_GROUP 353 seqs
2.28.3.20.1 PAL.HALOPLANKTIS_SUBGROUP 136 seqs
2.28.3.20.1.8172 OTU 2 seqs
prokMSA_id:73410 Pseudoalteromonas sp. Bdeep-1 
prokMSA_id:73474 Pseudoalteromonas sp. Ideep-1 
2.28.3.20.1.8260 OTU 1 seq
prokMSA_id:45605 Pseudoalteromonas kps67f 
2.28.3.20.1.8336 OTU 5 seqs
prokMSA_id:37299 Marine Tw-7 
prokMSA_id:39843 gamma Arctic96AD-16 
prokMSA_id:40549 Alteromonas sp. MS23 
prokMSA_id:43301 Pseudoalteromonas sp. AS-28 
prokMSA_id:51268 Pseudoalteromonas sp. AS-27 
2.28.3.20.1.8368 OTU 4 seqs
prokMSA_id:8921 Pseudoalteromonas RE10F/2 str. RE10F/2
prokMSA_id:42828 Pseudoalteromonas porphyrae 
prokMSA_id:59526 Pseudoalteromonas sp. KMM 3635 strain KMM 3635
prokMSA_id:79398 Pseudoalteromonas sp. MMM18 
2.28.3.20.1.8580 OTU 28 seqs
prokMSA_id:8905 Pseudoalteromonas nigrifaciens NCIMB 8614
prokMSA_id:8907 Pseudoalteromonas gracilis str. B9
prokMSA_id:8914 Pseudoalteromonas ANG.ro2 str. ANG.strain ro2
prokMSA_id:8926 Pseudoalteromonas sp. str. IC006
prokMSA_id:8927 Pseudoalteromonas sp. str. MB6-03
prokMSA_id:8928 Pseudoalteromonas sp. str. MB8-02
prokMSA_id:8931 Pseudoalteromonas sp. str. SW08
prokMSA_id:8944 Pseudoalteromonas antarctica str. NF3 CECT 4664
prokMSA_id:8945 Alteromonas fuliginea KMM 216
prokMSA_id:21879 Pseudoalteromonas sp. KMM 520 
prokMSA_id:33697 Pseudoalteromonas sp. 22b 
prokMSA_id:45332 Pseudoalteromonas sp. JLN-A013 strain
prokMSA_id:54098 Psychrophilic marine PS39 complete and -23S intergenic space
prokMSA_id:54633 Psychrophilic marine PS10 complete and -23S intergenic space
prokMSA_id:54983 Psychrophilic sea water PS16 complete and -23S intergenic sp
prokMSA_id:60988 Pseudoalteromonas citrea strain CIP 105339 
prokMSA_id:61120 Pseudoalteromonas sp. MGP-34 
prokMSA_id:67502 Pseudoalteromonas sp. 39 strain 39 
prokMSA_id:72158 Polar sea R7076 
prokMSA_id:73595 Pseudoalteromonas sp. V4.BE.18 
prokMSA_id:77391 Psychrophilic marine WP-1 
prokMSA_id:83467 Pseudoalteromonas sp. R46 
prokMSA_id:84561 Pseudoalteromonas sp. R30 
prokMSA_id:84933 Pseudoalteromonas sp. E48 
prokMSA_id:85564 Pseudoalteromonas sp. E29 
prokMSA_id:85635 Pseudoalteromonas antarctica strain PS18 
prokMSA_id:85898 Pseudoalteromonas sp. E30 
prokMSA_id:86092 Pseudoalteromonas sp. E47 
2.28.3.20.1.8591 OTU 1 seq
prokMSA_id:17452 Pseudoalteromonas sp. UST991130-041 
2.28.3.20.1.8602 OTU 1 seq
prokMSA_id:47224 Pseudoalteromonas kps58rc 
2.28.3.20.1.8617 OTU 1 seq
prokMSA_id:8920 str. KI89A
2.28.3.20.1.8713 OTU 3 seqs
prokMSA_id:26362 Alteromonas sp. KT0232 
prokMSA_id:37967 Marine Tw-2 
prokMSA_id:73001 Pseudoalteromonas 
2.28.3.20.1.8768 OTU 1 seq
prokMSA_id:51156 Pseudoalteromonas kps64f 
2.28.3.20.1.8932 OTU 1 seq
prokMSA_id:8946 Pseudoalteromonas antarctica str. N-1
2.28.3.20.1.8975 OTU 7 seqs
prokMSA_id:17084 Pseudoalteromonas SIC.8123 AF277504
prokMSA_id:37660 Pseudoalteromonas sp. 2b 
prokMSA_id:37970 Alteromonas sp. strain NIBH P3M26 complete 
prokMSA_id:40554 C16S 
prokMSA_id:43190 x3 
prokMSA_id:83123 Pseudoalteromonas sp. R44 
prokMSA_id:97790 Pseudoalteromonas sp. 2-3-6-2 AY383040
2.28.3.20.1.9019 OTU 1 seq
prokMSA_id:33026 Marine adapted facultatively oligotrophic PAF-2 
2.28.3.20.1.9058 OTU 3 seqs
prokMSA_id:8908 Pseudoalteromonas carrageenovora IAM 12662
prokMSA_id:8916 str. 12-13
prokMSA_id:85933 Pseudoalteromonas sp. RE2-12b 
2.28.3.20.1.9111 OTU 1 seq
prokMSA_id:84384 Pseudoalteromonas sp. E36 
2.28.3.20.1.9143 OTU 43 seqs
prokMSA_id:8909 Pseudoalteromonas sp. str. FU0605
prokMSA_id:8910 str. H120
prokMSA_id:8912 Pseudoalteromonas atlantica IAM 12927
prokMSA_id:8918 Pseudoalteromonas haloplanktis subsp. tetraodonis str. GFC I
prokMSA_id:8919 Pseudoalteromonas sp. str. AR0307
prokMSA_id:8925 Alteromonas elyakovii str. 40MC KMM 162
prokMSA_id:8929 Pseudoalteromonas sp. str. IC013
prokMSA_id:8930 Pseudoalteromonas sp. str. MB6-05
prokMSA_id:8932 Pseudoalteromonas elyakovii str. O22
prokMSA_id:8934 Pseudoalteromonas ER72M2
prokMSA_id:8947 Alteromonas distincta KMM 638
prokMSA_id:17585 Pseudoalteromonas elyakovii 
prokMSA_id:18568 Pseudoalteromonas sp. P-1P41 
prokMSA_id:18661 Pseudoalteromonas atlantica 
prokMSA_id:20215 Pseudoalteromonas sp. AS-41 
prokMSA_id:22902 Alteromonas distincta 
prokMSA_id:23058 Pseudoalteromonas sp. EH-2-1 
prokMSA_id:30396 Marine Tw-5 
prokMSA_id:32584 Pseudoalteromonas sp. SUR560 
prokMSA_id:33435 Marine BB2AT2 
prokMSA_id:35558 Pseudoalteromonas sp. TE1-1 strain TE1-1
prokMSA_id:37455 Pseudoalteromonas issachenkonii strain KMM 3558 
prokMSA_id:39984 Pseudoalteromonas haloplanktis subsp. tetraodonis strain KMM
prokMSA_id:46309 Pseudoalteromonas sp. KMM 3548 
prokMSA_id:46753 Pseudoalteromonas agarovorans strain KMM 255
prokMSA_id:50106 Pseudoalteromonas sp. KM-Y92-001 
prokMSA_id:51317 Pseudoalteromonas atlantica 
prokMSA_id:52453 Pseudoalteromonas sp. TE2-2 strain TE2-2
prokMSA_id:61131 Pseudoalteromonas sp. MGP-2 
prokMSA_id:70360 Abyssal strain AIII3* 
prokMSA_id:71431 Pseudoalteromonas sp. V4.BE.07 
prokMSA_id:71998 Polar sea R7852 
prokMSA_id:77092 Pseudoalteromonas sp. AC-144 
prokMSA_id:80048 Pseudoalteromonas atlantica 
prokMSA_id:81950 Pseudoalteromonas sp. ANT9388 
prokMSA_id:82882 Pseudoalteromonas sp. E33 
prokMSA_id:83200 Pseudoalteromonas sp. CAM25 
prokMSA_id:83556 Marine arctic deep-sea HA10b 
prokMSA_id:83930 Marine arctic deep-sea FK8b 
prokMSA_id:84567 Pseudoalteromonas sp. FRA000006 
prokMSA_id:84881 Alteromonadaceae T8 
prokMSA_id:86352 Pseudoalteromonas sp. CAM36 
prokMSA_id:86404 Marine arctic deep-sea HA10a 
2.28.3.20.1.9205 OTU 1 seq
prokMSA_id:19398 gamma Arctic96B-17 
2.28.3.20.1.9218 OTU 14 seqs
prokMSA_id:8915 str. H7
prokMSA_id:8935 Pseudoalteromonas haloplanktis subsp. haloplanktis ATCC 1439
prokMSA_id:16478 Pseudoalteromonas sp. LT13 complete 
prokMSA_id:17633 Pseudoalteromonas sp. PF30-23 
prokMSA_id:20578 Pseudoalteromonas sp. JLN-U1 strain
prokMSA_id:23413 Pseudoalteromonas sp. DC1 complete 
prokMSA_id:25530 Pseudoalteromonas sp
prokMSA_id:27905 Marine gamma BB2AT2 
prokMSA_id:41181 Pseudoalteromonas sp. SE1-2red strain SE1-2red
prokMSA_id:42494 Pseudoalteromonas sp. SE1-2ox strain SE1-2ox
prokMSA_id:71344 Marine ATAM173a_36 
prokMSA_id:75690 Pseudoalteromonas sp. AC-205 
prokMSA_id:82342 Pseudoalteromonas sp. ANT9377 
prokMSA_id:86246 Pseudoalteromonas sp. R14 
2.28.3.20.1.9248 OTU 1 seq
prokMSA_id:38050 Pseudoalteromonas sp. MERTZ_2CM_95 
2.28.3.20.1.9298 OTU 2 seqs
prokMSA_id:69611 gamma isolate DGGE band C30 AF466889
prokMSA_id:84028 Pseudoalteromonas sp. UST020129-026 
2.28.3.20.1.9324 OTU 10 seqs
prokMSA_id:8906 Pseudoalteromonas sp. str. SW29
prokMSA_id:8939 Moritella marina str. MP-1 ATCC 15381 . X74709
prokMSA_id:8963 Pseudoalteromonas S9 str. S9
prokMSA_id:8966 Pseudoalteromonas piscicida str. C201 CERBOM. X82141
prokMSA_id:31455 Pseudoalteromonas ruthenica strain KMM290 
prokMSA_id:36812 Pseudoalteromonas sp. Edeep-1 
prokMSA_id:40223 Pseudoalteromonas ruthenica strain KMM300 
prokMSA_id:43347 Vestimentiferan symbiont TW-4 
prokMSA_id:43482 Pseudoalteromonas sp. AS-29 AJ391190
prokMSA_id:79319 Gamma UMB11F 
2.28.3.20.1.9364 OTU 2 seqs
prokMSA_id:8913 Pseudoalteromonas sp. str. MB8-11
prokMSA_id:79339 Gamma UMB20C 
2.28.3.20.1.9386 OTU 1 seq
prokMSA_id:52182 Alteromonas sp. strain NIBH P3M26 complete 
2.28.3.20.1.9627 OTU 1 seq
prokMSA_id:23171 Pseudoalteromonas sp
2.28.3.20.1.9640 OTU 1 seq
prokMSA_id:43095 Marine Tw-10 
2.28.3.20.2 PAL.AURANTIA_SUBGROUP 47 seqs
2.28.3.20.2.8572 OTU 1 seq
prokMSA_id:46627 Pseudoalteromonas sp. A25 
2.28.3.20.2.8643 OTU 21 seqs
prokMSA_id:8948 Pele's Vents clone PVB_18
prokMSA_id:8949 Pseudoalteromonas RE10F/5 str. RE10F/5
prokMSA_id:8950 Pseudoalteromonas S511-1 str. S511-1
prokMSA_id:22024 Marine gamma SWAT5 AF366050
prokMSA_id:29044 Pseudoalteromonas sp. A28 
prokMSA_id:30320 clone Car70fc AF224867
prokMSA_id:34196 Pseudoalteromonas sp. Bsur-1 
prokMSA_id:36441 Marine Tw-4 
prokMSA_id:37218 Pseudoalteromonas espejiana strain kpa58 AF195465
prokMSA_id:55382 clone BB2_15 
prokMSA_id:60461 Alteromonas sp. O-TC11A AY007201
prokMSA_id:64941 gamma CS4K-109 AY095801
prokMSA_id:64943 gamma CS4K-106 AY095799
prokMSA_id:64951 gamma CS4K-1 AY095794
prokMSA_id:69339 Pseudoalteromonas sp. 33-3 AF513404
prokMSA_id:74244 Marine Tw-8 AY028203
prokMSA_id:76654 Pseudoalteromonas sp. KJ 2-4 
prokMSA_id:80967 gamma clone WCPAP5 AY220709
prokMSA_id:89387 Bacillus sp. LEBHAM-01 strain LEBHAM-01 AJ575803
prokMSA_id:93544 Pseudoalteromonas sp. es32 isolate es32 AJ551132
prokMSA_id:97834 Pseudoalteromonas sp. EPR 1 AY394862
2.28.3.20.2.9145 OTU 2 seqs
prokMSA_id:8952 Pseudoalteromonas aurantia ATCC 33046
prokMSA_id:8957 Pseudoalteromonas citrea NCIMB 1889
2.28.3.20.2.9149 OTU 11 seqs
prokMSA_id:8967 Pseudoalteromonas piscicida KMM 636
prokMSA_id:8968 Pseudoalteromonas peptidysin str. F12-50-A1
prokMSA_id:8969 Pseudoalteromonas piscicida str. Cura-d
prokMSA_id:8970 Pseudoalteromonas Y str. Y
prokMSA_id:8971 Pseudoalteromonas piscicida ATCC 15057
prokMSA_id:8972 Pseudoalteromonas rubra ATCC 29570
prokMSA_id:23900 Pseudoalteromonas piscicida clone NCIMB645 
prokMSA_id:26328 Pseudoalteromonas flavipulchra 
prokMSA_id:39091 Pseudoalteromonas piscicida 
prokMSA_id:71138 Pseudoalteromonas sp. AS-43 
prokMSA_id:84026 Pseudoalteromonas sp. RE2-5b 
2.28.3.20.2.9148 OTU 7 seqs
prokMSA_id:8954 Pseudoalteromonas UL14 str. UL14
prokMSA_id:8955 Pseudoalteromonas UL15 str. UL15
prokMSA_id:8956 Pseudoalteromonas UL1 str. UL1
prokMSA_id:8964 Pseudoalteromonas UL12 str. UL12
prokMSA_id:8965 Pseudoalteromonas UL13 str. UL13
prokMSA_id:44193 Pseudoalteromonas SIC.999 AF277522
prokMSA_id:85529 Pseudoalteromonas sp. R6 AF539776
2.28.3.20.2.9339 OTU 1 seq
prokMSA_id:71107 Pseudoalteromonas sp. 05 
2.28.3.20.2.9369 OTU 1 seq
prokMSA_id:8961 Pseudoalteromonas luteoviolacea NCIMB 1893
2.28.3.20.2.9511 OTU 1 seq
prokMSA_id:21860 SBR2113 
2.28.3.20.2.9576 OTU 1 seq
prokMSA_id:19424 Pseudoalteromonas sp. ACEM-4 
2.28.3.20.2.9591 OTU 1 seq
prokMSA_id:8962 clone HstpL94
2.28.3.20.3 PAL.BACTERIOLYTICA 2 seqs
2.28.3.20.3.8254 OTU 1 seq
prokMSA_id:50424 Marine B-10-31 
2.28.3.20.3.9414 OTU 1 seq
prokMSA_id:8974 Pseudoalteromonas str. E8R IAM 14595
2.28.3.20.4 MRT.MARINA_SUBGROUP 77 seqs
2.28.3.20.4.8201 OTU 1 seq
prokMSA_id:83672 Shewanella surugaensis strain:c959
2.28.3.20.4.8520 OTU 1 seq
prokMSA_id:20204 Moritella sp. PS10-13 
2.28.3.20.4.8581 OTU 38 seqs
prokMSA_id:8998 Vibrio sp. str. DB172F
prokMSA_id:9007 Vibrio sp. str. DB6906
prokMSA_id:9008 Shewanella violacea str. DSS12
prokMSA_id:9012 Shewanella benthica str. DB21MT-2
prokMSA_id:9013 Shewanella sp. str. 7-10.B
prokMSA_id:9021 Vibrio sp. str. DB172R
prokMSA_id:9022 Shewanella benthica str. PT99
prokMSA_id:9023 ATCC 33888
prokMSA_id:9025 Shewanella gelidimarina str. ICP6 ACAM 456
prokMSA_id:9026 Shewanella ANG.Sq2 str. ANG.strain Sq2
prokMSA_id:9030 Shewanella SQ10
prokMSA_id:9031 Shewanella SQ26
prokMSA_id:18498 Shewanella fidelia strain KMM3582T 
prokMSA_id:40030 Shewanella sp. GIT-33 
prokMSA_id:44629 Shewanella sp. SG133 
prokMSA_id:46491 Shewanella sp. clone D1Mn
prokMSA_id:47896 Shewanella fidelia strain KMM3589 
prokMSA_id:55880 Shewanella sp. SM2-1 AB081762
prokMSA_id:56028 Shewanella sp. IK-1 AB081757
prokMSA_id:60926 Shewanella sp. HRKC24 AB081761
prokMSA_id:60928 Shewanella sp. HRKA1 AB081760
prokMSA_id:60929 Shewanella sp. 2T11 AB081759
prokMSA_id:60933 Shewanella sp. HZ17 AB081758
prokMSA_id:61112 Shewanella gelidimarina 
prokMSA_id:69583 Shewanella fidelis 
prokMSA_id:70185 Shewanella sp. strain DB172R 
prokMSA_id:71566 Shewanella sp. strain:DB5501
prokMSA_id:71630 Shewanella sp. strain DB172F D63488
prokMSA_id:71831 Shewanella violacea 
prokMSA_id:72541 Shewanella sp. strain:DB6101
prokMSA_id:72743 Shewanella sp. strain:DB6906 D21223
prokMSA_id:83294 Shewanella kaireiae strain:c931
prokMSA_id:88004 Shewanella japonica isolate KMM 3582 AF500079
prokMSA_id:88382 Shewanella sp. clone MBAE19 AJ567580
prokMSA_id:89202 Shewanella sp. clone MBAE71 AJ567612
prokMSA_id:89280 Shewanella sp. clone MBAE53 AJ567602
prokMSA_id:89499 Shewanella sp. clone MBAE39 AJ567593
prokMSA_id:90286 Shewanella sp. clone MBAE52 AJ567601
2.28.3.20.4.8641 OTU 7 seqs
prokMSA_id:8975 Moritella japonica str. DSK1
prokMSA_id:8989 Moritella DB21MT-5 str. DB21MT-5
prokMSA_id:8992 Moritella sp. str. 9-3.G. AB013840
prokMSA_id:8994 Shewanella sp. str. 7-1.E
prokMSA_id:24239 Moritella sp. strain 2693
prokMSA_id:70982 Moritella sp. MGP-6 
prokMSA_id:94578 Moritella sp. 2D2 AB120660
2.28.3.20.4.8743 OTU 1 seq
prokMSA_id:23606 Gamma MTW-13 
2.28.3.20.4.8904 OTU 1 seq
prokMSA_id:32285 Gamma PS12-4 
2.28.3.20.4.8921 OTU 1 seq
prokMSA_id:9017 Shewanella sp. str. 3-8.C
2.28.3.20.4.8956 OTU 1 seq
prokMSA_id:9014 barophile WHB 46 clone 2
2.28.3.20.4.8958 OTU 1 seq
prokMSA_id:9016 Vibrio sp. str. DB6101
2.28.3.20.4.9009 OTU 1 seq
prokMSA_id:9027 Shewanella ANG.209 str. ANG.strain 209
2.28.3.20.4.9011 OTU 1 seq
prokMSA_id:9029 Shewanella ANG.231 str. ANG.strain 231
2.28.3.20.4.9039 OTU 1 seq
prokMSA_id:9034 str. 3.b
2.28.3.20.4.9081 OTU 1 seq
prokMSA_id:43120 Shewanella sp. MTW-1 
2.28.3.20.4.9222 OTU 7 seqs
prokMSA_id:9001 Shewanella sp. str. 16.k
prokMSA_id:9004 Shewanella woodyi str. MS32 DSM 12036
prokMSA_id:9005 Shewanella woodyi str. MS1
prokMSA_id:9020 barophile WHB 46 clone 1
prokMSA_id:9035 Shewanella hanedai CIP 103207
prokMSA_id:9036 Shewanella hanedai str. IC050 ACAM 585
prokMSA_id:9037 str. KMG427
2.28.3.20.4.9227 OTU 1 seq
prokMSA_id:80118 clone:OHKB4.78
2.28.3.20.4.9384 OTU 12 seqs
prokMSA_id:8976 Moritella marina str. MP-1 NCIMB 1144
prokMSA_id:8977 Moritella viscosa str. NVI 88/478T
prokMSA_id:8978 Moritella ODA02
prokMSA_id:8979 Moritella HAS1123
prokMSA_id:8983 Moritella HAR13
prokMSA_id:8985 Moritella SC20
prokMSA_id:8986 Moritella SC22
prokMSA_id:8987 Moritella SC25
prokMSA_id:8988 Moritella SC27
prokMSA_id:8995 Moritella viscosa str. 478/88
prokMSA_id:33284 Moritella marina 
prokMSA_id:72172 Moritella sp. strain 2674
2.28.3.20.4.9411 OTU 1 seq
prokMSA_id:69757 Shewanella waksmanii 
2.28.3.20.5 SHE.PUTREFACIENS_SUBGROUP 91 seqs
2.28.3.20.5.8189 OTU 1 seq
prokMSA_id:50125 Shewanella frigidimarina strain ACAM 562 
2.28.3.20.5.8371 OTU 1 seq
prokMSA_id:46569 gamma SIC.10369 
2.28.3.20.5.8648 OTU 1 seq
prokMSA_id:41357 clone t012 
2.28.3.20.5.8662 OTU 66 seqs
prokMSA_id:9044 Shewanella frigidimarina str. A173 ACAM 584. U85902
prokMSA_id:9047 Shewanella frigidimarina str. IC010 ACAM 600. U85906
prokMSA_id:9048 Shewanella sp. str. SC2A. AB003190
prokMSA_id:9050 Shewanella Ac10 str. Ac10. AF061557
prokMSA_id:9053 Shewanella frigidimarina NCIMB 400. Y13699
prokMSA_id:9057 Shewanella putrefaciens str. B.W. Hammer 95 ATCC 8071 . X821
prokMSA_id:9060 Shewanella oneidensis str. SP-22. AF039055
prokMSA_id:9068 Shewanella baltica NCTC 10735 . AJ000214
prokMSA_id:9069 Shewanella putrefaciens str. A6
prokMSA_id:9070 Shewanella putrefaciens str. F137
prokMSA_id:9071 Shewanella putrefaciens NCTC 10695
prokMSA_id:9072 Shewanella MR-4 str. MR-4. AF005252
prokMSA_id:9073 Shewanella MR-7 str. MR-7
prokMSA_id:9074 Shewanella MR-8 str. MR-8
prokMSA_id:9075 Shewanella baltica str. OS155
prokMSA_id:9076 Shewanella baltica str. OS195. AJ000216
prokMSA_id:9079 Shewanella massilia
prokMSA_id:9094 Shewanella putrefaciens LMG 2268 . X81623
prokMSA_id:9097 Shewanella algae str. BrY. X81621
prokMSA_id:9098 Shewanella putrefaciens str. A31
prokMSA_id:9101 Shewanella putrefaciens ACAM 577. AF006672
prokMSA_id:9102 Shewanella putrefaciens ACAM 574. AF006670
prokMSA_id:9105 clone Aspo5
prokMSA_id:9106 Shewanella putrefaciens NCIMB 12577
prokMSA_id:9108 Shewanella putrefaciens str. MR-30
prokMSA_id:9110 Shewanella ML-S3 str. ML-S3. AF140017
prokMSA_id:9111 Shewanella ML-S2 str. ML-S2. AF140016
prokMSA_id:9113 Shewanella oneidensis str. MR-1
prokMSA_id:16931 Shewanella frigidimarina strain LMG19867 AJ300833
prokMSA_id:19933 Shewanella sp. isolate SK-3-30-1
prokMSA_id:20504 Shewanella frigidimarina strain ACAM 552 AF132871
prokMSA_id:24664 Shewanella oneidensis strain SP-7 AF039054
prokMSA_id:29356 Shewanella sp. SIS1 AB039739
prokMSA_id:32956 Shewanella sp. CL256/73 AF387346
prokMSA_id:33931 Shewanella oneidensis AF387347
prokMSA_id:35898 Polar sea R7216 AJ295714
prokMSA_id:37367 Shewanella sp. 184 AF387349
prokMSA_id:38945 Shewanella frigidimarina strain ACAM 557 
prokMSA_id:47655 Shewanella sp. SIB1 AB039737
prokMSA_id:51097 W3 18-1 AF387350
prokMSA_id:55466 Shewanella oneidensis MR-1 section 272 of 457 of the complet
prokMSA_id:57774 Shewanella oneidensis MR-1 section 431 of 457 of the complet
prokMSA_id:57775 Shewanella oneidensis MR-1 section 455 of 457 of the complet
prokMSA_id:57777 Shewanella oneidensis MR-1 section 430 of 457 of the complet
prokMSA_id:57778 Shewanella oneidensis MR-1 section 343 of 457 of the complet
prokMSA_id:57779 Shewanella oneidensis MR-1 section 402 of 457 of the complet
prokMSA_id:57780 Shewanella oneidensis MR-1 section 24 of 457 of the complete
prokMSA_id:57781 Shewanella oneidensis MR-1 section 19 of 457 of the complete
prokMSA_id:57784 Shewanella oneidensis MR-1 section 4 of 457 of the complete 
prokMSA_id:70682 S.putrefaciens X81623
prokMSA_id:74152 Shewanella livingstonis strain LMG19866T AJ300834
prokMSA_id:75631 Shewanella sp. Ko702 AF550588
prokMSA_id:75869 Shewanella sp. Ko704 AF550589
prokMSA_id:79977 clone ARKCH4-100 AF468269
prokMSA_id:80135 clone ARKDMS-30 
prokMSA_id:80288 clone ARKCH2Br2-49 AF468231
prokMSA_id:80425 Arctic sea ice ARK10035 AF468387
prokMSA_id:80569 clone ARKIA-82 
prokMSA_id:81492 Shewanella sp. ANT9071 
prokMSA_id:84722 Alteromonadaceae RE1-1 
prokMSA_id:85371 Alteromonadaceae RE2-10 
prokMSA_id:86253 Alteromonadaceae E1 
prokMSA_id:86623 Antarctic R-12605 strain R-12605
prokMSA_id:87848 Shewanella livingstonensis strain GA-22 AJ563805
prokMSA_id:89905 Shewanella putrefaciens AY321590
prokMSA_id:93758 Shewanella sp. WW001 AB111109
2.28.3.20.5.8916 OTU 2 seqs
prokMSA_id:9042 Shewanella algae str. OK-1 IAM 14159
prokMSA_id:9064 Shewanella alga str. 43940
2.28.3.20.5.9067 OTU 1 seq
prokMSA_id:9067 Shewanella alga ACM 4733
2.28.3.20.5.9147 OTU 1 seq
prokMSA_id:9041 Shewanella sp. ACAM 122
2.28.3.20.5.9247 OTU 4 seqs
prokMSA_id:9077 Shewanella KMM3299 KMM 3299
prokMSA_id:87528 Shewanella japonica isolate KMM 3597 AF500075
prokMSA_id:87894 Shewanella japonica isolate KMM 3590 AF500076
prokMSA_id:87995 Shewanella japonica isolate KMM 3577 AF500078
2.28.3.20.5.9296 OTU 1 seq
prokMSA_id:72648 gamma CHAB-I-7 5' 
2.28.3.20.5.9344 OTU 9 seqs
prokMSA_id:9062 Shewanella algae str. FeRed
prokMSA_id:9063 Shewanella alga str. 14.80-A
prokMSA_id:9065 Shewanella alga str. T# 8
prokMSA_id:9066 Shewanella alga str. 68872
prokMSA_id:9112 Shewanella algae ATCC 51192
prokMSA_id:28400 Shewanella alga 
prokMSA_id:46882 Shewanella sp. A6.mk 
prokMSA_id:71500 Alteromonadaceae PH39 
prokMSA_id:72739 S.alga Bry
2.28.3.20.5.9367 OTU 1 seq
prokMSA_id:47581 PV-4 
2.28.3.20.5.9393 OTU 1 seq
prokMSA_id:22553 Shewanella sp. isolate Bok-1-30-2
2.28.3.20.5.9416 OTU 1 seq
prokMSA_id:84951 Alteromonadaceae R8 
2.28.3.20.5.9586 OTU 1 seq
prokMSA_id:79941 Shewanella gaetbuli 
2.28.3.21 PSM.ANTARC_GROUP 23 seqs
2.28.3.21.8579 OTU 21 seqs
prokMSA_id:9115 str. 90-Pgv1
prokMSA_id:9117 Psychromonas IC004 str. IC004
prokMSA_id:9120 str. 174
prokMSA_id:9121 Psychromonas antarctica str. star-1 DSM 10704. Y14697
prokMSA_id:21481 Psychromonas kaikoae strain:JT7304
prokMSA_id:25724 Psychromonas profunda 
prokMSA_id:32735 Marine Mst85 strain Mst85 AJ400705
prokMSA_id:38990 Psychromonas arctica complete 
prokMSA_id:39185 Psychromonas sp. Ant5-5 
prokMSA_id:47163 Marine psychrotrophic MK242 
prokMSA_id:61119 Psychromonas sp. MGP-29/AN1 
prokMSA_id:71948 Alteromonas sp. KT1114 
prokMSA_id:72165 Alteromonas sp. KT1102 AF235123
prokMSA_id:73094 Marine psychrotrophic Mst37 strain Mst37
prokMSA_id:73561 Alteromonas sp. KT1116 
prokMSA_id:79713 clone ARKIA-79 
prokMSA_id:80094 clone ARKDMS-45 
prokMSA_id:81267 Psychromonas sp. ANT9248 
prokMSA_id:81340 Psychromonas sp. ANT9265 
prokMSA_id:81844 Psychromonas sp. ANT9282a 
prokMSA_id:98089 Psychromonas hadaliensis strain:K41G AB094413
2.28.3.21.8633 OTU 1 seq
prokMSA_id:23426 Psychromonas sp. NTW-2 
2.28.3.21.9508 OTU 1 seq
prokMSA_id:9122 str. CNPT3
2.28.3.22 FRM.BALEARICA_GROUP 1 seq
2.28.3.22.8732 OTU 1 seq
prokMSA_id:84401 Gamma YSK-2002 
2.28.3.23 VIBRIO_GROUP 263 seqs
2.28.3.23.1 PHOTOBACTERIUM_SUBGROUP 56 seqs
2.28.3.23.1.1 V.HOLLISAE_SUBGROUP 4 seqs
2.28.3.23.1.1.8723 OTU 1 seq
prokMSA_id:9130 Vibrio RE35F/12 str. RE35F/12
2.28.3.23.1.1.9516 OTU 1 seq
prokMSA_id:9126 Vibrio hollisae CIP 101886
2.28.3.23.1.1.9517 OTU 1 seq
prokMSA_id:9129 symbiont of Melanocetus johnsoni
2.28.3.23.1.1.9523 OTU 1 seq
prokMSA_id:9131 symbiont of Cryptosaras couesi
2.28.3.23.1.2 SAV.COSTICOLA_SUBGROUP 11 seqs
2.28.3.23.1.2.8699 OTU 1 seq
prokMSA_id:21048 ECS22 
2.28.3.23.1.2.8749 OTU 1 seq
prokMSA_id:9142 Salinivibrio vallismortis DSM 8285
2.28.3.23.1.2.8887 OTU 9 seqs
prokMSA_id:9132 Vibrio aspartigenicus str. GSP-1 ATCC 49962. M98446
prokMSA_id:9133 Vibrio aspartigenicus str. GSP-1 ATCC 49962. M98446
prokMSA_id:9134 Salinivibrio costicola NCIMB 701 . X74699
prokMSA_id:9136 Salinivibrio costicola NCIMB 701
prokMSA_id:9137 Salinivibrio costicola subsp. pathovar str. AV3. X95528
prokMSA_id:9138 Salinivibrio costicola subsp. pathovar str. cepa 6. X95531
prokMSA_id:9139 Salinivibrio costicola subsp. pathovar str. E-367
prokMSA_id:9140 Salinivibrio costicola subsp. pathovar str. H-178
prokMSA_id:9141 Salinivibrio costicola subsp. pathovar str. V-15. X95530
2.28.3.23.1.3 PHB.DAMSELA_SUBGROUP 14 seqs
2.28.3.23.1.3.9083 OTU 14 seqs
prokMSA_id:9143 Photobacterium damsela subsp. piscicida NCIMB 2058
prokMSA_id:9144 Photobacterium damsela str. wild isolate
prokMSA_id:9145 Photobacterium damselae subsp. Piscicida str. Kre4
prokMSA_id:9147 Photobacterium damsela subsp. damsela CIP 102761
prokMSA_id:9148 Photobacterium damselae subsp. piscicida str. KP9038
prokMSA_id:9149 Photobacterium histaminum str. C-8
prokMSA_id:20588 Photobacterium damselae subsp. damselae 
prokMSA_id:41265 Photobacterium histaminum 
prokMSA_id:95505 Photobacterium damselae subsp. piscicida strain K12 AY147858
prokMSA_id:96255 Photobacterium damselae subsp. piscicida strain CVD3 AY14785
prokMSA_id:97403 Photobacterium damselae subsp. damselae strain CCRC15428 AY1
prokMSA_id:97821 Photobacterium damselae subsp. piscicida strain I736 AY14785
prokMSA_id:98163 Photobacterium damselae subsp. piscicida strain CVD1 AY14785
prokMSA_id:98324 Photobacterium damselae subsp. piscicida strain PN510 AY1478
2.28.3.23.1.4 PHB.LEIOGNATHI_SUBGROUP 6 seqs
2.28.3.23.1.4.8471 OTU 6 seqs
prokMSA_id:9151 Photobacterium leiognathi str. L1 CIP 66.5
prokMSA_id:9152 Photobacterium leiognathi str. PL721. Z21730
prokMSA_id:9153 Photobacterium leiognathi str. L1 ATCC 25521 . D11184
prokMSA_id:9154 Photobacterium leiognathi str. L1 ATCC 25521
prokMSA_id:38240 Photobacterium sp. UST991130-005 AF465393
prokMSA_id:83564 Photobacterium sp. YS27-3 
2.28.3.23.1.6 PHB.PROFUNDUM_SUBGROUP 8 seqs
2.28.3.23.1.6.8443 OTU 6 seqs
prokMSA_id:9159 Photobacterium profundum str. DSJ4
prokMSA_id:9160 Photobacterium profundum str. SS9
prokMSA_id:9161 str. MBIC3157
prokMSA_id:71373 Hyphomicrobium sp. Ddeep-1 
prokMSA_id:72659 Photobacterium sp. 16 
prokMSA_id:94122 Hyphomicrobium sp. wp13 isolate wp13 AJ551094
2.28.3.23.1.6.8460 OTU 1 seq
prokMSA_id:42976 clone Car123rc 
2.28.3.23.1.6.9642 OTU 1 seq
prokMSA_id:36478 Photobacterium sp. PS11-6 
2.28.3.23.1.7 PHB.PHOSPHOREUM_SUBGROUP 13 seqs
2.28.3.23.1.7.8999 OTU 13 seqs
prokMSA_id:9157 Photobacterium angustum ATCC 25915
prokMSA_id:9163 Photobacterium iliopiscarium str. PS1 ATCC 51760
prokMSA_id:9165 Photobacterium phosphoreum str. Og61
prokMSA_id:9167 Photobacterium phosphoreum ATCC 11040
prokMSA_id:9168 Photobacterium phosphoreum ATCC 11040
prokMSA_id:20048 Photobacterium sp. HAR72 AB038032
prokMSA_id:22086 Vibrio sp. strain NIBH P2K5 complete 
prokMSA_id:38706 Photobacterium sp. HAR23 
prokMSA_id:67191 Photobacterium sp. D151 AF497998
prokMSA_id:83679 Photobacterium phosphoreum AB095446
prokMSA_id:92082 Photobacterium phosphoreum isolate AK1 AY345889
prokMSA_id:92256 Photobacterium phosphoreum isolate AK6 AY345891
prokMSA_id:92792 Photobacterium phosphoreum isolate AK8 AY345893
2.28.3.23.2 V.ORIENTALIS_SUBGROUP 3 seqs
2.28.3.23.2.8764 OTU 1 seq
prokMSA_id:9170 Vibrio orientalis str. 717 CIP 102891
2.28.3.23.2.9425 OTU 1 seq
prokMSA_id:9171 Vibrio orientalis str. 716 ATCC 33933
2.28.3.23.2.9567 OTU 1 seq
prokMSA_id:63324 clone RCP2-22 
2.28.3.23.3 VIBRIO_SUBGROUP 95 seqs
2.28.3.23.3.1 V.FURNISSII_SUBGROUP 2 seqs
2.28.3.23.3.1.8707 OTU 1 seq
prokMSA_id:60374 Vibrio sp. PH19 
2.28.3.23.3.1.8785 OTU 1 seq
prokMSA_id:9175 Vibrio fluvialis str. VL 5125 NCTC 11327
2.28.3.23.3.2 V.NEREIS_SUBGROUP 3 seqs
2.28.3.23.3.2.8694 OTU 1 seq
prokMSA_id:34147 Vibrio sp. UST991130-023 
2.28.3.23.3.2.9465 OTU 1 seq
prokMSA_id:26621 gamma TIHP302-28 
2.28.3.23.3.2.9525 OTU 1 seq
prokMSA_id:33548 Vibrio sp. UST991130-028 
2.28.3.23.3.3 V.SALMONICIDA_SUBGROUP 4 seqs
2.28.3.23.3.3.8531 OTU 4 seqs
prokMSA_id:9184 Vibrio wodanis str. NVI 88/441T. AJ132227
prokMSA_id:20390 Vibrio logei AF323992
prokMSA_id:33640 Vibrio logei strain NCIMB 2252
prokMSA_id:65248 Vibrio sp. Torgnes 1 
2.28.3.23.3.4 V.FISCHERI_SUBGROUP 2 seqs
2.28.3.23.3.4.9473 OTU 1 seq
prokMSA_id:80175 clone ARKDMS-58 
2.28.3.23.3.4.9522 OTU 1 seq
prokMSA_id:9195 clone HstpL49
2.28.3.23.3.5 V.PROTEOLYTICUS_SUBGROUP 4 seqs
2.28.3.23.3.5.8608 OTU 2 seqs
prokMSA_id:26819 Vibrio sp. UST991130-007 AF465395
prokMSA_id:82011 Vibrio sp. BLI-41 
2.28.3.23.3.5.9066 OTU 1 seq
prokMSA_id:9201 Vibrio nigripulchritudo CIP 103195
2.28.3.23.3.5.9166 OTU 1 seq
prokMSA_id:50709 Marine gamma SWAT2 
2.28.3.23.3.6 V.HARVEYI_SUBGROUP 80 seqs
2.28.3.23.3.6.8543 OTU 1 seq
prokMSA_id:50075 Vibrio sp. NBF10 
2.28.3.23.3.6.8560 OTU 1 seq
prokMSA_id:17817 gamma MERTZ_2CM_275 
2.28.3.23.3.6.8665 OTU 72 seqs
prokMSA_id:9180 Vibrio tubiashii CIP 102760 . X74725
prokMSA_id:9196 Vibrio proteolyticus str. 262 CIP 102892
prokMSA_id:9205 Vibrio campbellii str. 40 CIP 75.01
prokMSA_id:9207 Vibrio Lu1 str. Lu1
prokMSA_id:9208 Vibrio halioticoli str. A431 IAM 14596
prokMSA_id:9209 Vibrio halioticoli IAM 14597
prokMSA_id:9210 Vibrio halioticoli IAM 14598
prokMSA_id:9211 Vibrio halioticoli IAM 14599
prokMSA_id:9214 Vibrio harveyi ATCC 35084
prokMSA_id:9215 Vibrio carchariae
prokMSA_id:9216 Vibrio Lu8 str. Lu8
prokMSA_id:9219 Vibrio campbellii str. 40 ATCC 25920
prokMSA_id:9223 Vibrio alginolyticus CIP 70.65
prokMSA_id:9226 Vibrio alginolyticus str. XII-53 ATCC 17749
prokMSA_id:9227 Vibrio parahaemolyticus CIP 73.30
prokMSA_id:9229 Vibrio NAP-4 str. NAP-4
prokMSA_id:9230 Vibrio natriegens str. 111 CIP 103193
prokMSA_id:9233 Vibrio mytili
prokMSA_id:9234 Vibrio alginolyticus str. XII-53 CIP 75.03
prokMSA_id:9238 Vibrio natriegens str. 111 ATCC 14048
prokMSA_id:9240 Vibrio parahaemolyticus str. 113 CIP 75.02
prokMSA_id:9243 Vibrio harveyi CIP 103192
prokMSA_id:19456 Vibrio sp
prokMSA_id:21967 Vibrio sp. 73 
prokMSA_id:24526 Vibrio sp. Ex25 
prokMSA_id:26876 Vibrio sp. AS-32 
prokMSA_id:29344 Vibrio sp. BB4 
prokMSA_id:31661 Vibrio campbellii 
prokMSA_id:34170 Vibrio sp. NLEP97-1598 
prokMSA_id:36201 Vibrio parahaemolyticus clone F44 
prokMSA_id:45699 Vibrio sp. AB003 
prokMSA_id:47824 Vibrio parahaemolyticus clone Vp23 
prokMSA_id:48633 Vibrio parahaemolyticus clone Vp 27 
prokMSA_id:50883 Vibrio harveyi strain M4 
prokMSA_id:55336 Vibrio alginolyticus 
prokMSA_id:59705 Vibrio sp. 442 
prokMSA_id:60045 Vibrio sp. R-14939 strain R-14939
prokMSA_id:60376 Vibrio proteolyticus 
prokMSA_id:66026 Vibrio sp. C33 
prokMSA_id:70114 Vibrio sp. R-15052 strain R-15052
prokMSA_id:71300 Vibrio sp. R-14968 strain R-14968
prokMSA_id:71462 Vibrio sp. 01 
prokMSA_id:72620 Vibrio sp. LMG 20546 strain LMG 20546 AJ316172
prokMSA_id:72695 Vibrio sp. 98CJ11027 
prokMSA_id:72857 Vibrio sp. LMG 20547 strain LMG 20547
prokMSA_id:72939 Vibrio trachuri strain LMG 19643 AJ312382
prokMSA_id:73398 Vibrio sp. NLEP97-1599 
prokMSA_id:73534 Vibrio sp. LMG 19270 strain LMG 19270
prokMSA_id:74377 Vibrio sp. LMG 19970 strain LMG 19970 AJ316206
prokMSA_id:74411 Vibrio sp. LMG 19972 strain LMG 19972 AJ316205
prokMSA_id:81625 Vibrio parahaemolyticus RIMD 2210633 chromosome I complete 
prokMSA_id:82255 Vibrio parahaemolyticus RIMD 2210633 chromosome II complete 
prokMSA_id:82286 Vibrio parahaemolyticus chromosome 1 complete 11/11
prokMSA_id:82362 Vibrio parahaemolyticus chromosome 1 complete 1/11
prokMSA_id:83444 Vibrio parahaemolyticus isolate 15 
prokMSA_id:84052 Vibrio gallicus strain CIP 107864 
prokMSA_id:84057 Vibrio parahaemolyticus isolate L21 
prokMSA_id:84064 Vibrio vulnificus isolate 7 
prokMSA_id:84254 Vibrio sp. CJ11052 
prokMSA_id:84441 Vibrio parahaemolyticus isolate 13 
prokMSA_id:84838 Vibrio parahaemolyticus isolate 17 
prokMSA_id:84937 Vibrio gallicus strain CIP 107867 AY257975
prokMSA_id:84964 Vibrio gallicus strain CIP 107866 AY257974
prokMSA_id:85262 Vibrio parahaemolyticus isolate 18 
prokMSA_id:85428 Vibrio gallicus strain CIP 107865 
prokMSA_id:86266 Vibrio parahaemolyticus isolate 21 
prokMSA_id:86444 Vibrio gallicus strain CIP 107863 
prokMSA_id:86641 Vibrio vulnificus isolate 9 
prokMSA_id:86674 Vibrio vulnificus isolate 4 
prokMSA_id:91201 Vibrio harveyi strain EcGY020401 AY332564
prokMSA_id:91969 Vibrio harveyi strain EcGS020802 AY332565
prokMSA_id:93965 Vibrio sp. CH-291 AJ580582
2.28.3.23.3.6.9174 OTU 1 seq
prokMSA_id:30332 Vibrio sp. UST991130-046 
2.28.3.23.3.6.9192 OTU 1 seq
prokMSA_id:42368 gamma TIHP302-30 
2.28.3.23.3.6.9223 OTU 1 seq
prokMSA_id:83211 Vibrio parahaemolyticus isolate 22 
2.28.3.23.3.6.9333 OTU 1 seq
prokMSA_id:9213 Vibrio parahaemolyticus str. 113 ATCC 17802
2.28.3.23.3.6.9395 OTU 1 seq
prokMSA_id:24993 Vibrio sp. GIT-14 
2.28.3.23.3.6.9593 OTU 1 seq
prokMSA_id:70729 Vibrio sp. 05 
2.28.3.23.4 V.MEDITERRANEI_SUBGROUP 14 seqs
2.28.3.23.4.8223 OTU 8 seqs
prokMSA_id:29041 Gamma NW4079 AF384142
prokMSA_id:38009 marine PP-145.98 
prokMSA_id:60378 Vibrio sp. PH1 
prokMSA_id:66767 Vibrio corallilyticus strain LMG 20984
prokMSA_id:70057 Vibrio corallilyticus strain LMG 21349 AJ440004
prokMSA_id:71152 Vibrio sp. LMG 20548 strain LMG 20548 AJ316170
prokMSA_id:72904 Vibrio sp. LMG 20536 strain LMG 20536
prokMSA_id:73319 Vibrio sp. LMG 10953 strain LMG 10953
2.28.3.23.4.9207 OTU 1 seq
prokMSA_id:9246 symbiont of Anomalops katoptron
2.28.3.23.4.9430 OTU 1 seq
prokMSA_id:9244 symbiont of Photoblepharon palpebratus
2.28.3.23.4.9432 OTU 1 seq
prokMSA_id:9245 symbiont of Photoblepharon palpebratus
2.28.3.23.4.9457 OTU 1 seq
prokMSA_id:9249 symbiont of Kryptophanaron alfredi
2.28.3.23.4.9478 OTU 1 seq
prokMSA_id:9250 symbiont of Photoblepharon steinetzi
2.28.3.23.4.9624 OTU 1 seq
prokMSA_id:51068 Vibrio sp. NBF4 
2.28.3.23.5 V.SPLENDIDUS_SUBGROUP 69 seqs
2.28.3.23.5.8267 OTU 21 seqs
prokMSA_id:9279 Vibrio tapetis str. B1090 CECT 4600
prokMSA_id:40343 Vibrio sp. Hdeep-1 
prokMSA_id:42870 4c 
prokMSA_id:47083 Vibrio splendidus strain B17 
prokMSA_id:56555 Vibrio splendidus strain TNEMF6
prokMSA_id:69396 Vibrio splendidus strain LMG 10952
prokMSA_id:70080 Vibrio chagasii strain LMG 13237
prokMSA_id:71509 Vibrio sp. R-3712 strain R-3712
prokMSA_id:71896 Vibrio sp. LMG 20539 strain LMG 20539
prokMSA_id:71902 Vibrio sp. AS-42 
prokMSA_id:72056 Vibrio sp. PMV18 complete 
prokMSA_id:73227 Vibrio pomeroyi strain LMG 20537T AJ491290
prokMSA_id:73863 Vibrio sp. Cdeep-1 
prokMSA_id:74459 Vibrio splendidus strain TNNIII7
prokMSA_id:78597 Vibrio tapetis strain LP2 
prokMSA_id:82987 Vibrio sp. 3 
prokMSA_id:83553 Vibrio sp. 6 
prokMSA_id:84666 Vibrio splendidus 
prokMSA_id:85453 Vibrio sp. L5 
prokMSA_id:86378 Pseudoalteromonas sp. R9 
prokMSA_id:86584 Vibrio sp. 13a 
2.28.3.23.5.8394 OTU 1 seq
prokMSA_id:9282 Vibrio rumoiensis str. S-1
2.28.3.23.5.8589 OTU 6 seqs
prokMSA_id:17434 Vibrio sp. OM02 
prokMSA_id:23581 clone 249
prokMSA_id:25142 clone 272
prokMSA_id:28001 clone 253
prokMSA_id:38260 clone 247
prokMSA_id:39199 clone 334
2.28.3.23.5.8669 OTU 1 seq
prokMSA_id:9280 clone HstpL66
2.28.3.23.5.8798 OTU 38 seqs
prokMSA_id:9254 Vibrio splendidus CIP 102893 . X74724
prokMSA_id:9270 Vibrio sp. str. A053. AJ132987
prokMSA_id:9272 str. DPT1.2. AJ002567
prokMSA_id:16828 Vibrio lentus strain 40M4T CECT 5110T AJ278881
prokMSA_id:24584 Vibrio aestuarianus AF172840
prokMSA_id:26431 Vibrio sp. ED4 
prokMSA_id:26484 Vibrio sp. EN280 AB038024
prokMSA_id:26716 Vibrio sp. Da2 
prokMSA_id:31562 Vibrio sp. Sr3 
prokMSA_id:43627 Vibrio sp. OC25 
prokMSA_id:45173 Vibrio sp. TK327 AB038025
prokMSA_id:46227 Vibrio sp. Da4 
prokMSA_id:46685 Vibrio sp. 3d clone 3d2 
prokMSA_id:49860 Vibrio sp. Sk1 
prokMSA_id:51176 Vibrio lentus strain 3OM21 CECT 5293 AJ278880
prokMSA_id:52051 Vibrio sp. 3d clone 3d7 
prokMSA_id:54302 Vibrio sp. 3d clone 3d8 
prokMSA_id:55282 Vibrio splendidus strain A053 clone a
prokMSA_id:56212 Vibrio splendidus strain PMV18
prokMSA_id:67338 Vibrio sp. 3d clone 3d4 
prokMSA_id:69386 Vibrio splendidus strain VS6turb
prokMSA_id:69668 Vibrio splendidus strain LMG 4042 clone a
prokMSA_id:69712 Vibrio splendidus strain LMG 4042 clone b
prokMSA_id:72001 Vibrio splendidus strain A515 clone b
prokMSA_id:72609 Vibrio sp. LT73 complete AF456335
prokMSA_id:73369 Vibrio sp. LT21 complete AF456338
prokMSA_id:73749 Vibrio sp. V4.BP.07 AJ244774
prokMSA_id:73914 Vibrio splendidus strain VC1
prokMSA_id:74026 Vibrio splendidus strain A515 clone a
prokMSA_id:74168 Vibrio sp. R-3884 strain R-3884 AJ316200
prokMSA_id:74614 Vibrio splendidus strain LT06
prokMSA_id:78737 Vibrio splendidus strain LP1 
prokMSA_id:78974 Vibrio sp. QY101 AY174869
prokMSA_id:82520 Vibrio sp. RE1-3 
prokMSA_id:83795 Pseudoalteromonas sp. R12 
prokMSA_id:85836 Pseudoalteromonas sp. RE1-12a 
prokMSA_id:85910 Vibrio sp. WYB 
prokMSA_id:86573 Vibrio sp. YWA 
2.28.3.23.5.9100 OTU 1 seq
prokMSA_id:18737 Vibrio kps60rc 
2.28.3.23.5.9372 OTU 1 seq
prokMSA_id:25702 Vibrio sp. 121 
2.28.3.23.7 V.SCOPHTHALMI_SUBGROUP 13 seqs
2.28.3.23.7.8888 OTU 13 seqs
prokMSA_id:9247 Vibrio mediterranei CIP 103203
prokMSA_id:9248 Vibrio shiloi str. AK-1
prokMSA_id:9268 Vibrio splendidus str. SCB8
prokMSA_id:9283 Vibrio pectenicida str. A365 CIP 105190
prokMSA_id:9286 Vibrio scophthalmi str. A089 CECT 4638
prokMSA_id:9288 Vibrio aestuarianus str. OY-0-002 CIP 102971
prokMSA_id:40425 Listonella anguillarum AY035897
prokMSA_id:48368 Vibrio ichthyoenteri strain DSM 14397T
prokMSA_id:62643 Vibrio sp. No.6 
prokMSA_id:70635 Listonella anguillarum serovar O1 AY069970
prokMSA_id:74258 Listonella anguillarum serovar O2a AY069971
prokMSA_id:83112 Vibrionaceae T16 
prokMSA_id:85619 Vibrio sp. RE2-8 
2.28.3.23.9 V.CHOLERAE_SUBGROUP 6 seqs
2.28.3.23.9.9225 OTU 6 seqs
prokMSA_id:9295 Vibrio cholerae CECT 514
prokMSA_id:9299 Vibrio cholerae str. 1094 ATCC 14035 . Z21856
prokMSA_id:9301 Vibrio cholerae str. 1094 CIP 62.13 . X74694
prokMSA_id:9306 Vibrio mimicus CIP 101888 . X74713
prokMSA_id:9308 Vibrio cholerae str. 1062 INSERM U303. X74695
prokMSA_id:53406 Vibrio cholerae chromosome I complete chromosome NC_002505
2.28.3.23.10 V.DIAZOTROPHICUS_SUBGROUP 7 seqs
2.28.3.23.10.8224 OTU 2 seqs
prokMSA_id:9321 Vibrio metschnikovii str. MV 2484 NCTC 11170
prokMSA_id:72041 Vibrio sp. LMG 4426 strain LMG 4426 AJ316180
2.28.3.23.10.8912 OTU 1 seq
prokMSA_id:9318 clone HstpL17
2.28.3.23.10.8914 OTU 1 seq
prokMSA_id:9319 Vibrio aerogenes str. FG1 ATCC 700797
2.28.3.23.10.8964 OTU 1 seq
prokMSA_id:47306 Vibrio ruber 
2.28.3.23.10.9512 OTU 1 seq
prokMSA_id:9313 Vibrio cincinnatiensis ATCC 35912
2.28.3.23.10.9532 OTU 1 seq
prokMSA_id:9322 Vibrio metschnikovii CIP 69.14
2.28.3.24 AEROMONAS_GROUP 125 seqs
2.28.3.24.1 RUM.AMYLOPHILUS_SUBGROUP 11 seqs
2.28.3.24.1.8822 OTU 1 seq
prokMSA_id:60771 Anaerobiospirillum sp. 3J102 
2.28.3.24.1.8860 OTU 2 seqs
prokMSA_id:9352 clone JW27
prokMSA_id:9353 clone JW34
2.28.3.24.1.8977 OTU 1 seq
prokMSA_id:9351 Succinimonas amylolytica DSM 2873
2.28.3.24.1.8976 OTU 3 seqs
prokMSA_id:9348 Ruminobacter amylophilus ATCC 29744 . X06765
prokMSA_id:9349 Ruminobacter amylophilus DSM 1361 . Y15992
prokMSA_id:9350 Ruminobacter amylophilus str. Bovine rumen NIAH 3
2.28.3.24.1.8996 OTU 1 seq
prokMSA_id:9356 Anaerobiospirillum succiniciproducens str. S411 ATCC 29305
2.28.3.24.1.8997 OTU 1 seq
prokMSA_id:9357 Succinivibrio dextrinosolvens DSM 3072
2.28.3.24.1.9400 OTU 2 seqs
prokMSA_id:29865 Anaerobiospirillum thomasii strain DSM 11806T AJ420985
prokMSA_id:60774 Anaerobiospirillum sp. B0101 
2.28.3.24.2 ARM.HYDROPHILA_SUBGROUP 114 seqs
2.28.3.24.2.8340 OTU 6 seqs
prokMSA_id:9386 Aeromonas ichthiosmia DSM 6393
prokMSA_id:9425 Aeromonas veronii ATCC 35624
prokMSA_id:9437 Aeromonas veronii NCIMB 13015
prokMSA_id:9438 Aeromonas 'CDC 964-83' CDC 964-83
prokMSA_id:49072 Aeromonas veronii 
prokMSA_id:58410 Aeromonas veronii clone 5 
2.28.3.24.2.8364 OTU 4 seqs
prokMSA_id:9361 Aeromonas allosaccharophila CECT 4199
prokMSA_id:9362 Aeromonas 'CDC 715-84' CDC 715-84
prokMSA_id:9426 Aeromonas 'CDC 437-84' CDC 437-84
prokMSA_id:58413 Aeromonas veronii clone 4 
2.28.3.24.2.8406 OTU 4 seqs
prokMSA_id:9401 str. MBIC1298 ATCC 27123
prokMSA_id:9402 str. MBIC1298 ATCC 27123. AB021371
prokMSA_id:35016 Oceanomonas baumannii 
prokMSA_id:73145 Pseudomonas doudoroffii AF094724
2.28.3.24.2.8621 OTU 1 seq
prokMSA_id:25552 Aeromonas sp. PAR2A 
2.28.3.24.2.8734 OTU 1 seq
prokMSA_id:9403 Aeromonas jandaei str. ST19
2.28.3.24.2.8746 OTU 1 seq
prokMSA_id:9405 Aeromonas hydrophila str. LB5
2.28.3.24.2.8812 OTU 1 seq
prokMSA_id:84842 Oceanisphaera litoralis strain DSM 15406
2.28.3.24.2.9000 OTU 43 seqs
prokMSA_id:9359 Aeromonas salmonicida subsp. smithia CCM 4103
prokMSA_id:9363 Aeromonas hydrophila ATCC 35654
prokMSA_id:9369 Aeromonas media ATCC 33907
prokMSA_id:9372 Aeromonas hydrophila subsp. hydrophila ATCC 7966
prokMSA_id:9381 Aeromonas hydrophila subsp. hydrophila CIP 76.14
prokMSA_id:9382 Aeromonas 'CDC 862-83' CDC 862-83
prokMSA_id:9384 Aeromonas jandaei ATCC 49568
prokMSA_id:9385 Aeromonas culicicola strain MTCC 3249 
prokMSA_id:9399 Aeromonas trota ATCC 49657
prokMSA_id:9400 Aeromonas jandaei ATCC 49568
prokMSA_id:9410 Aeromonas jandaei CDC 787-80
prokMSA_id:9411 Aeromonas RC278 str. RC278MM85
prokMSA_id:9417 Aeromonas caviae NCIMB 13016
prokMSA_id:9419 Aeromonas 'CDC 2452-91' CDC 2452-91
prokMSA_id:9421 Aeromonas caviae ATCC 15467. X60409
prokMSA_id:9422 Aeromonas 'CDC 9013-89' CDC 9013-89
prokMSA_id:9424 Aeromonas T8 str. T8
prokMSA_id:9427 Aeromonas RC50 str. RC50; FC643
prokMSA_id:9433 Aeromonas trota ATCC 49657
prokMSA_id:9439 Aeromonas guangheii str. 95-173
prokMSA_id:9445 Aeromonas salmonicida str. NI-441 T83-k-sw-2 IS-205
prokMSA_id:9446 Aeromonas salmonicida str. GU-187 IB-277
prokMSA_id:9452 Aeromonas caviae CIP 76.16
prokMSA_id:9453 Aeromonas media ATCC 33907
prokMSA_id:9454 Aeromonas media str. 86352
prokMSA_id:20270 Aeromonas sp. PG3-3 
prokMSA_id:26539 gamma BioIuz K40 
prokMSA_id:28522 Aeromonas hydrophila strain 45/90 
prokMSA_id:30233 gamma BioIuz K41 
prokMSA_id:39643 Aeromonas sp. PG4-1 
prokMSA_id:42667 Aeromonas hydrophila strain 4AK4 
prokMSA_id:46643 gamma BioIuz K1 
prokMSA_id:51245 Aeromonas sp. NLEP A-1607 
prokMSA_id:52200 gamma BioIuz K39 
prokMSA_id:55879 Aeromonas veronii clone 3 
prokMSA_id:58415 Aeromonas veronii clone 1 
prokMSA_id:59115 Aeromonas media isolate 4 
prokMSA_id:59116 Aeromonas media isolate 6 
prokMSA_id:59117 Aeromonas media isolate 5 
prokMSA_id:59119 Aeromonas media isolate 3 
prokMSA_id:59291 Aeromonas hydrophila subsp. dhakensis strain LMG 19562T
prokMSA_id:61814 gamma clone CLs70 
prokMSA_id:69929 Aeromonas hydrophila subsp. ranae strain LMG 19707T
2.28.3.24.2.9026 OTU 10 seqs
prokMSA_id:9395 Aeromonas salmonicida subsp. salmonicida CIP 103209
prokMSA_id:9398 Aeromonas salmonicida subsp. pectinolytica str. 34mel
prokMSA_id:9420 Aeromonas salmonicida subsp. masoucida str. 1-1-1 CIP 103210
prokMSA_id:9444 Aeromonas salmonicida subsp. achromogenes NCIMB 1110
prokMSA_id:9447 Haemophilus piscium NCIMB 1952
prokMSA_id:22088 Aeromonas salmonicida 
prokMSA_id:34796 Aeromonas salmonicida atypical 
prokMSA_id:44568 Aeromonas salmonicida 
prokMSA_id:56271 Aeromonadaceae clone PH-B39N 
prokMSA_id:74870 Aeromonas hydrophila 
2.28.3.24.2.9062 OTU 6 seqs
prokMSA_id:9366 Aeromonas sp. str. 93/1060-1. L31915
prokMSA_id:9375 Aeromonas salmonicida subsp. salmonicida NCIMB 1102 . X60405
prokMSA_id:9376 Aeromonas salmonicida subsp. salmonicida NCIMB 1102 . X60406
prokMSA_id:9416 Aeromonas MR-64 str. MR-64
prokMSA_id:42473 Aeromonas sp. ML-S4 
prokMSA_id:46545 Elbe River snow isolate Iso10neu 
2.28.3.24.2.9245 OTU 1 seq
prokMSA_id:82407 clone:A-8
2.28.3.24.2.9440 OTU 13 seqs
prokMSA_id:9360 Aeromonas eucrenophila CIP 76.17
prokMSA_id:9389 Aeromonas popoffii LMG 17542
prokMSA_id:9396 Aeromonas encheleia str. A 1881
prokMSA_id:9406 Aeromonas eucrenophila NCIMB 74
prokMSA_id:9407 Aeromonas 'CDC 859-83' CDC 859-83
prokMSA_id:9415 Aeromonas sobria NCIMB 12065
prokMSA_id:9431 Aeromonas sp. ATCC 35941
prokMSA_id:9434 Aeromonas sobria CIP 74.33
prokMSA_id:43157 Aeromonas sp
prokMSA_id:67000 Aeromonas sp. LMG 13062 strain LMG 13062
prokMSA_id:67001 Aeromonas sp. LMG 17065 . strain LMG 17065
prokMSA_id:67002 Aeromonas sp. LMG 16405 strain LMG 16405
prokMSA_id:67005 Aeromonas sp. LMG 13061 strain LMG 13061
2.28.3.24.2.9460 OTU 1 seq
prokMSA_id:22488 Aeromonas sp. A33 
2.28.3.24.2.9494 OTU 20 seqs
prokMSA_id:9365 Aeromonas hydrophila str. Ef1L1
prokMSA_id:9367 Aeromonas schubertii ATCC 43700
prokMSA_id:9418 Aeromonas 'CDC 9017-79' CDC 9017-79. U88657
prokMSA_id:9449 Aeromonas schubertii DSM 4882
prokMSA_id:9450 Aeromonas 'CDC 2478-85' CDC 2478-85
prokMSA_id:18994 Aeromonas sp. 54 isolate 54
prokMSA_id:21594 gamma BioIuz K43 
prokMSA_id:34508 KF/GS-JG36-20 
prokMSA_id:36658 Aeromonas sp. BC16 
prokMSA_id:40526 gamma BioIuz K30 
prokMSA_id:46908 gamma BioIuz K33 
prokMSA_id:47441 Elbe River snow isolate Iso19neu AF150699
prokMSA_id:56067 Aeromonas media isolate 1 AF418214
prokMSA_id:58414 Aeromonas veronii clone 2 AF418210
prokMSA_id:61823 gamma clone CLi66 
prokMSA_id:66205 Aeromonas sp. strain RR8
prokMSA_id:78159 gamma clone:APe2_12 AB074594
prokMSA_id:78527 Aeromonas simiae strain IBS S6652
prokMSA_id:79043 Aeromonas simiae strain IBS S6874T
prokMSA_id:82433 clone:A-9
2.28.3.24.2.9537 OTU 1 seq
prokMSA_id:47170 clone LRS19
2.28.3.24.2.9539 OTU 1 seq
prokMSA_id:9448 clone 12-18
2.28.3.26 HAEMOPHILUS-PASTEURELLA_GROUP 194 seqs
2.28.3.26.4 PAS.BISGAARD_TAXON_13_SUBGROUP 15 seqs
2.28.3.26.4.8509 OTU 1 seq
prokMSA_id:84897 soil clone Tc131-39 
2.28.3.26.4.9360 OTU 14 seqs
prokMSA_id:16802 Pasteurella multocida strain PM966 AY078997
prokMSA_id:17819 Pasteurella multocida subsp. gallicida AF294412
prokMSA_id:18195 Pasteurella multocida subsp. septica strain CCUG 17977 
prokMSA_id:18868 Pasteurella multocida strain PM2 
prokMSA_id:19379 Pasteurella multocida subsp. gallicida strain HIM830-7T AF32
prokMSA_id:29263 Pasteurella multocida subsp. septica 
prokMSA_id:34012 Pasteurella sp. MCCM 00657 AF224298
prokMSA_id:37549 Pasteurella multocida subsp. septica strain NCTC 11995 
prokMSA_id:37670 Pasteurella multocida subsp. multocida strain NCTC 10322 AY0
prokMSA_id:42806 Pasteurella multocida subsp. gallicida AF224297
prokMSA_id:45341 Pasteurella multocida subsp. gallicida strain NCTC 10204 AY0
prokMSA_id:49634 Pasteurella multocida subsp. septica AF326325
prokMSA_id:62944 Pasteurella multocida subsp. tigris complete 
prokMSA_id:72192 Pasteurella multocida subsp. gallicida strain 77179 
2.28.3.26.5 PAS.DAGMATIS 1 seq
2.28.3.26.5.9476 OTU 1 seq
prokMSA_id:69985 Pasteurella pneumotropica 
2.28.3.26.7 PASTEURELLA.CANIS 1 seq
2.28.3.26.7.9349 OTU 1 seq
prokMSA_id:18332 Pasteurella sp. 91985 
2.28.3.26.9 PAS.ANATIS_SUBGROUP 25 seqs
2.28.3.26.9.8416 OTU 18 seqs
prokMSA_id:9468 Pasteurella anatis str. F149 ATCC 43329 . M75054
prokMSA_id:30522 Pasteurella anatis strain F149 
prokMSA_id:34804 Salpingitia sp. Gerl.3348/80 
prokMSA_id:48840 Salpingitia sp. Gerl.220 
prokMSA_id:50261 Salpingitia sp. BK3387.2 
prokMSA_id:64294 Pasteurella anatis strain B96/24 AY038593
prokMSA_id:70037 Salpingitia sp. CCM 5995 
prokMSA_id:70476 Salpingitia sp. 12158 
prokMSA_id:71725 Salpingitia sp. 20558 
prokMSA_id:72708 Salpingitia sp. 10672/6 
prokMSA_id:73007 Pasteurella anatis strain Hom.3 
prokMSA_id:73377 Salpingitia sp. BJ3453 
prokMSA_id:73524 Salpingitia sp. 36961/sv7 
prokMSA_id:73614 Salpingitia sp. Gerl.4224 
prokMSA_id:73745 Salpingitia sp. IPDH 697/78 
prokMSA_id:74034 Actinobacillus cf. salpingitidis CCUG 28018 
prokMSA_id:74083 Pasteurella anatis strain F279 
prokMSA_id:74275 Salpingitia sp. 10672/9 
2.28.3.26.9.8465 OTU 1 seq
prokMSA_id:9470 Pasteurella sp. str. Bisgaard Taxon 2
2.28.3.26.9.8803 OTU 5 seqs
prokMSA_id:27031 Salpingitia sp. CCM 5976 
prokMSA_id:42277 Salpingitia sp. Gerl.2740/89 
prokMSA_id:52792 Salpingitia sp. CCM 5974 
prokMSA_id:64296 Actinobacillus salpingitidis 
prokMSA_id:70689 Salpingitia sp. CCM 5975 
2.28.3.26.9.9659 OTU 1 seq
prokMSA_id:9469 Pasteurella sp. str. Bisgaard Taxon 3
2.28.3.26.10 H.INFLUENZAE_SUBGROUP 27 seqs
2.28.3.26.10.8195 OTU 11 seqs
prokMSA_id:9471 Haemophilus influenzae ATCC 33391
prokMSA_id:9473 Haemophilus influenzae str. Rd =rrnD . L42023
prokMSA_id:9476 Haemophilus influenzae str. biotype IV CIP 5483. X87977
prokMSA_id:9481 Haemophilus influenzae str. Rd =rrnE . L42023
prokMSA_id:9482 Haemophilus influenzae str. Rd =rrnC . L42023
prokMSA_id:9483 Haemophilus influenzae str. Rd =rrnF . L42023
prokMSA_id:9500 Haemophilus influenzae str. Rd =rrnB . L42023
prokMSA_id:9507 Haemophilus influenzae str. Rd = . L42023
prokMSA_id:49616 Haemophilus influenzae Rd complete genome NC_000907
prokMSA_id:71828 Haemophilus influenzae AF076035
prokMSA_id:88850 Haemophilus sp. isolate PCR amplicon RL 2108 AY325756
2.28.3.26.10.8205 OTU 1 seq
prokMSA_id:9477 Pasteurella pneumotropica NCTC 8141
2.28.3.26.10.8278 OTU 1 seq
prokMSA_id:33152 Pasteurella salmonicida isolate 95A1
2.28.3.26.10.8555 OTU 6 seqs
prokMSA_id:9479 Haemophilus influenzae str. biotype III CCUG 7585
prokMSA_id:9514 Actinobacillus porcinus str. NM319
prokMSA_id:44852 Haemophilus influenzae ATCC 9833 
prokMSA_id:73432 Actinobacillus capsulatus P796 AF224295
prokMSA_id:82586 Pasteurella gallinarum strain NCTC 11051 
prokMSA_id:82728 Pasteurella gallinarum strain R44sv 
2.28.3.26.10.9213 OTU 3 seqs
prokMSA_id:9484 Haemophilus influenzae str. 2406. X87979
prokMSA_id:9509 Haemophilus influenzae str. 16N CIP 103723
prokMSA_id:46278 Haemophilus quentini AF224307
2.28.3.26.10.9470 OTU 2 seqs
prokMSA_id:9478 Pasteurella pneumotropica str. CNP 160
prokMSA_id:74548 Pasteurellaceae gen. sp. Forsyth A3 
2.28.3.26.10.9477 OTU 1 seq
prokMSA_id:19891 Haemophilus influenzae ATCC 8142 
2.28.3.26.10.9546 OTU 1 seq
prokMSA_id:9510 Actinobacillus delphinicola str. M1063L NCTC 12871
2.28.3.26.10.9552 OTU 1 seq
prokMSA_id:9511 Pasteurella phocoenarum str. M1063U NCTC 12872
2.28.3.26.11 H.PARASUIS_SUBGROUP 31 seqs
2.28.3.26.11.8228 OTU 6 seqs
prokMSA_id:22523 Actinobacillus indolicus strain H1422 
prokMSA_id:42737 Actinobacillus indolicus strain H1261 
prokMSA_id:49124 Actinobacillus indolicus strain H1419 
prokMSA_id:70885 Actinobacillus indolicus strain H1235 
prokMSA_id:71115 Actinobacillus indolicus strain H1106 
prokMSA_id:72436 Actinobacillus indolicus strain H1271 AF268963
2.28.3.26.11.8800 OTU 8 seqs
prokMSA_id:9533 Haemophilus parasuis str. 354
prokMSA_id:9534 Haemophilus parasuis str. 362. AB004029
prokMSA_id:9535 Haemophilus parasuis str. 366. AB004030
prokMSA_id:9536 Haemophilus parasuis str. 697
prokMSA_id:9537 Haemophilus parasuis str. Nagasaki MAFF 911038
prokMSA_id:23554 Haemophilus parasuis strain:322 AB078974
prokMSA_id:24900 Haemophilus parasuis isolate:319 AB078973
prokMSA_id:30824 Haemophilus parasuis isolate:312
2.28.3.26.11.8861 OTU 6 seqs
prokMSA_id:9519 Haemophilus parasuis str. No.131
prokMSA_id:9521 Haemophilus parasuis str. 271
prokMSA_id:9523 Haemophilus parasuis str. 427
prokMSA_id:9528 Haemophilus parasuis str. 82
prokMSA_id:31672 Actinobacillus indolicus strain H1269 
prokMSA_id:71539 Actinobacillus indolicus strain H873 
2.28.3.26.11.8938 OTU 4 seqs
prokMSA_id:9515 str. JF1390. AF025839
prokMSA_id:29369 Pasteurella aerogenes MCCM 01551 
prokMSA_id:73163 Actinobacillus rossii 
prokMSA_id:73923 Pasteurella aerogenes MCCM 01550 
2.28.3.26.11.8947 OTU 1 seq
prokMSA_id:32352 Bisgaardia hudsonenesis strain 98-D-690B
2.28.3.26.11.9234 OTU 1 seq
prokMSA_id:9513 Actinobacillus indolicus str. 46KC2
2.28.3.26.11.9355 OTU 1 seq
prokMSA_id:21372 clone p-4752-2Wb2 
2.28.3.26.11.9587 OTU 4 seqs
prokMSA_id:70062 Actinobacillus porcinus strain H1498 
prokMSA_id:70580 clone p-4307-4Wa3 
prokMSA_id:71733 Actinobacillus porcinus strain H1281 
prokMSA_id:73816 Actinobacillus porcinus strain H1215 
2.28.3.26.13 H.DUCREYI_SUBGROUP 1 seq
2.28.3.26.13.8171 OTU 1 seq
prokMSA_id:9545 Haemophilus ducreyi CIP 542
2.28.3.26.14 PAS.TREHALOSI_SUBGROUP 5 seqs
2.28.3.26.14.9443 OTU 5 seqs
prokMSA_id:9551 Mannheimia haemolytica NCTC 10624. M75063
prokMSA_id:9552 Pasteurella trehalosi str. T3 PH 68. U57073
prokMSA_id:9553 Pasteurella trehalosi str. T10 PH 252. U57074
prokMSA_id:9554 Pasteurella trehalosi str. T4 PH 246. U57075
prokMSA_id:58590 rumen clone:RE8
2.28.3.26.15 PAS.VOLANTIUM_SUBGROUP 3 seqs
2.28.3.26.15.8480 OTU 1 seq
prokMSA_id:9555 Haemophilus haemoglobinophilus NCTC 1659
2.28.3.26.15.9030 OTU 1 seq
prokMSA_id:85860 Bisgaard Taxon 33 strain B96/5 
2.28.3.26.15.9626 OTU 1 seq
prokMSA_id:36769 Haemophilus sp. MCCM 01557 
2.28.3.26.17 ACB.PLEUROPNEUMONIAE_SUBGROUP 16 seqs
2.28.3.26.17.8614 OTU 1 seq
prokMSA_id:21084 Acidithiobacillus thiooxidans 
2.28.3.26.17.8830 OTU 3 seqs
prokMSA_id:9565 Pasteurella sp. str. Bisgaard Taxon 9. L06084
prokMSA_id:72164 Actinobacillus sp. F 92 AF247714
prokMSA_id:73547 Actinobacillus sp. CCUG 24862 
2.28.3.26.17.8952 OTU 5 seqs
prokMSA_id:9579 Actinobacillus lignieresii NCTC 4189
prokMSA_id:9581 Actinobacillus pleuropneumoniae str. 77002
prokMSA_id:9583 Actinobacillus pleuropneumoniae str. 658
prokMSA_id:9587 Actinobacillus pleuropneumoniae str. R.Shope 4074? ATCC 2708
prokMSA_id:42766 Actinobacillus pleuropneumoniae HS143 
2.28.3.26.17.9154 OTU 1 seq
prokMSA_id:45954 Actinobacillus sp. CCUG 28015 
2.28.3.26.17.9263 OTU 6 seqs
prokMSA_id:9572 Actinobacillus equuli NCTC 8529 . M75072
prokMSA_id:9585 Actinobacillus capsulatus CCUG 19799
prokMSA_id:9586 Actinobacillus capsulatus str. 63595
prokMSA_id:58551 Actinobacillus sp. F 154 
prokMSA_id:58552 Actinobacillus sp. F 119 
prokMSA_id:70103 Actinobacillus cf. equuli 
2.28.3.26.18 MNH.HAEMOLYTICA_SUBGROUP 47 seqs
2.28.3.26.18.8876 OTU 1 seq
prokMSA_id:9591 Mannheimia R19.2 str. R19.2 CCUG 38463
2.28.3.26.18.8935 OTU 3 seqs
prokMSA_id:9593 Mannheimia haemolytica str. PH360; serotype UG4
prokMSA_id:9601 Mannheimia haemolytica str. PH40; UT35; serotype UG4
prokMSA_id:9611 Mannheimia varigena str. 177 CCUG 38462
2.28.3.26.18.9096 OTU 1 seq
prokMSA_id:9608 Mannheimia granulomatis str. 26 ATCC 49244
2.28.3.26.18.9109 OTU 3 seqs
prokMSA_id:9602 Pasteurella sp. str. Bisgaard Taxon 15 CCUG 16500
prokMSA_id:9612 Mannheimia varigena str. F155 CCM 5786
prokMSA_id:38515 Pasteurella haemolytica CCUG 28148 
2.28.3.26.18.9237 OTU 38 seqs
prokMSA_id:9577 Actinobacillus hominis CCUG 19800 . L06076
prokMSA_id:9582 Actinobacillus pleuropneumoniae str. 634. AF033058
prokMSA_id:9590 Mannheimia haemolytica str. PH704; serotype UG5
prokMSA_id:9592 Mannheimia HPA121 str. HPA121 CCUG 38468
prokMSA_id:9596 Mannheimia haemolytica str. PH2PH8; serotype A1
prokMSA_id:9597 Mannheimia glucosida str. P731 CCUG 38456
prokMSA_id:9598 Mannheimia glucosida str. UT18 CCUG 38458
prokMSA_id:9599 Mannheimia HPA102 str. HPA102 CCUG 38464
prokMSA_id:9600 Mannheimia haemolytica NCTC 9380
prokMSA_id:9603 Mannheimia ruminalis str. HPA92 CCUG 38470
prokMSA_id:9604 Mannheimia UT26 str. UT26 CCUG 38455
prokMSA_id:9605 Mannheimia ruminalis str. HPA98 CCUG 38466
prokMSA_id:9606 Mannheimia haemolytica str. PH290; serotype UG3
prokMSA_id:9607 Mannheimia glucosida str. P733 CCUG 38460
prokMSA_id:9610 Mannheimia glucosida str. P730. AF053897
prokMSA_id:9613 Mannheimia haemolytica str. PH152; UT23; serotype UG3
prokMSA_id:9614 Mannheimia glucosida str. P737 CCUG 38459
prokMSA_id:9615 Mannheimia haemolytica str. PH344; serotype A11
prokMSA_id:9616 Mannheimia glucosida str. P925 CCUG 38457
prokMSA_id:18347 clone p-1338-a2 AF371854
prokMSA_id:26862 Actinobacillus minor strain H1475 AF268951
prokMSA_id:31668 Actinobacillus minor strain H1468 AF268947
prokMSA_id:50727 clone p-2130-s959-2 AF371853
prokMSA_id:56644 Actinobacillus equuli strain T 355/87 AF247721
prokMSA_id:62471 Haemophilus ducreyi isolate Amsterdam 
prokMSA_id:69899 Actinobacillus arthritidis 
prokMSA_id:70395 Actinobacillus lignieresii strain F 264 AF247723
prokMSA_id:70644 Actinobacillus porcitonsillarum strain 99-536-55H-F AF486274
prokMSA_id:72024 Actinobacillus sp. H 4272/4 AF247719
prokMSA_id:73306 Actinobacillus porcitonsillarum strain RF0347 AF486275
prokMSA_id:73342 Actinobacillus lignieresii strain F 127 
prokMSA_id:88305 Haemophilus ducreyi strain 35000HP section 2 of 6 of the com
prokMSA_id:89152 Haemophilus ducreyi strain 35000HP section 3 of 6 of the com
prokMSA_id:89543 Haemophilus ducreyi strain 35000HP section 1 of 6 of the com
prokMSA_id:89921 Haemophilus ducreyi 35000HP complete genome NC_002940
prokMSA_id:90008 Haemophilus ducreyi strain 35000HP section 6 of 6 of the com
prokMSA_id:91524 Bisgaard taxon 26 biovar 2 AY172728
prokMSA_id:91684 Bisgaard taxon 26 biovar 1 AY172727
2.28.3.26.18.9604 OTU 1 seq
prokMSA_id:72830 Mannheimia sp. MCCM 00145 
2.28.3.26.19 H.ACTINOMYCETEMCOMITANS_SUBGROUP 22 seqs
2.28.3.26.19.8308 OTU 1 seq
prokMSA_id:9620 Haemophilus actinomycetemcomitans ATCC 33384
2.28.3.26.19.8312 OTU 1 seq
prokMSA_id:9623 Actinobacillus succinogenes str. 130Z ATCC 55618
2.28.3.26.19.8409 OTU 1 seq
prokMSA_id:86047 clone ABLCf1 
2.28.3.26.19.8432 OTU 1 seq
prokMSA_id:79654 clone csbio160231 
2.28.3.26.19.8848 OTU 1 seq
prokMSA_id:49556 str. 86355 
2.28.3.26.19.9162 OTU 1 seq
prokMSA_id:9619 CCUG 15572
2.28.3.26.19.9533 OTU 3 seqs
prokMSA_id:17538 Haemophilus segnis 
prokMSA_id:54767 Haemophilus segnis 
prokMSA_id:76576 gamma clone S15A-MN19
2.28.3.26.19.9628 OTU 13 seqs
prokMSA_id:81053 Histophilus somni 301-90 rrn AF549402
prokMSA_id:81079 Histophilus somni 8025 rrn AF549387
prokMSA_id:81142 Histophilus somni CCUG 46774 rrn 
prokMSA_id:81158 Histophilus somni 189-83 rrn 
prokMSA_id:81203 Histophilus somni CCUG 46773 rrn 
prokMSA_id:81519 Histophilus somni CCUG 18779 rrn 
prokMSA_id:81661 Histophilus somni CCUG 46771 rrn 
prokMSA_id:81866 Histophilus somni CCUG 46775 rrn 
prokMSA_id:81921 Histophilus somni CCUG 18778 rrn AF549396
prokMSA_id:82130 Histophilus somni CCUG 18780 rrn AF549392
prokMSA_id:82188 Histophilus somni 1062-89 rrn AF549405
prokMSA_id:82244 Histophilus somni CCUG 12839 rrn 
prokMSA_id:82382 Histophilus somni CCUG 36158 rrn 
2.28.3.27 ENTERICS_AND_RELATIVES 887 seqs
2.28.3.27.1 BUCHNERA_SUBGROUP 44 seqs
2.28.3.27.1.8191 OTU 1 seq
prokMSA_id:23181 Buchnera aphidicola Pterocomma populeum 
2.28.3.27.1.8352 OTU 1 seq
prokMSA_id:36645 Buchnera aphidicola Stomaphis quercus 
2.28.3.27.1.8384 OTU 1 seq
prokMSA_id:9642 Buchnera aphidicola
2.28.3.27.1.8387 OTU 1 seq
prokMSA_id:33113 Buchnera aphidicola Thelaxes suberi 
2.28.3.27.1.8395 OTU 1 seq
prokMSA_id:9645 Buchnera aphidicola
2.28.3.27.1.8396 OTU 1 seq
prokMSA_id:9646 Buchnera aphidicola
2.28.3.27.1.8421 OTU 6 seqs
prokMSA_id:9638 Buchnera aphidicola. M63246
prokMSA_id:9639 Buchnera aphidicola
prokMSA_id:9640 Buchnera aphidicola
prokMSA_id:9641 Buchnera aphidicola
prokMSA_id:64248 Buchnera aphidicola str. Sg Schizaphis graminum complete gen
prokMSA_id:64367 Buchnera aphidicola str. Sg Schizaphis graminum section 25 o
2.28.3.27.1.8458 OTU 1 seq
prokMSA_id:50183 Buchnera aphidicola Maculolachnus submacula 
2.28.3.27.1.8464 OTU 1 seq
prokMSA_id:54656 Secondary endosymbiont of Cacopsylla myrthi ; intergenic spa
2.28.3.27.1.8468 OTU 1 seq
prokMSA_id:9643 Buchnera aphidicola
2.28.3.27.1.8506 OTU 1 seq
prokMSA_id:9651 Buchnera aphidicola
2.28.3.27.1.8778 OTU 2 seqs
prokMSA_id:9650 Buchnera aphidicola
prokMSA_id:53693 Buchnera aphidicola Pemphigus populi 
2.28.3.27.1.8864 OTU 8 seqs
prokMSA_id:9644 symbiont of symbiont P of Acyrthosiphon pisum
prokMSA_id:20966 Buchnera sp
prokMSA_id:35977 Buchnera sp
prokMSA_id:40619 Buchnera sp. AB033775
prokMSA_id:47707 Buchnera sp. APS complete genome NC_002528
prokMSA_id:51167 Buchnera sp. AB033774
prokMSA_id:52753 Buchnera sp
prokMSA_id:70111 Buchnera sp. APS genomic complete segment 1/2 AP001118
2.28.3.27.1.8910 OTU 1 seq
prokMSA_id:17473 Buchnera aphidicola Eriosoma lanuginosum 
2.28.3.27.1.9014 OTU 6 seqs
prokMSA_id:17372 Buchnera aphidicola Yamatocallis hirayamae isolate:#567 prim
prokMSA_id:29368 Buchnera aphidicola Yamatocallis tokyoensis isolate:#566 pri
prokMSA_id:35589 Buchnera aphidicola Yamatocallis tokyoensis isolate:#526 pri
prokMSA_id:38168 Buchnera aphidicola Yamatocallis tokyoensis isolate:#207 pri
prokMSA_id:40406 Buchnera aphidicola Yamatocallis tokyoensis isolate:#317 pri
prokMSA_id:42294 Buchnera aphidicola Yamatocallis tokyoensis isolate:#525 pri
2.28.3.27.1.9156 OTU 1 seq
prokMSA_id:41305 Buchnera aphidicola Lachnus roboris 
2.28.3.27.1.9200 OTU 2 seqs
prokMSA_id:9652 Buchnera aphidicola
prokMSA_id:24034 Buchnera aphidicola Tetraneura caerulescens 
2.28.3.27.1.9256 OTU 1 seq
prokMSA_id:9648 Buchnera aphidicola
2.28.3.27.1.9260 OTU 1 seq
prokMSA_id:9649 unnamed organism
2.28.3.27.1.9273 OTU 1 seq
prokMSA_id:24924 Buchnera aphidicola Tuberolachnus salignus 
2.28.3.27.1.9285 OTU 1 seq
prokMSA_id:9653 Buchnera aphidicola
2.28.3.27.1.9309 OTU 1 seq
prokMSA_id:67659 Buchnera sp
2.28.3.27.1.9504 OTU 1 seq
prokMSA_id:23853 Buchnera aphidicola Panaphis juglandis 
2.28.3.27.1.9527 OTU 1 seq
prokMSA_id:34972 Buchnera aphidicola Hoplocallis pictus 
2.28.3.27.1.9601 OTU 1 seq
prokMSA_id:41602 Buchnera aphidicola Baizongia pistaciae 
2.28.3.27.2 ESCHERICHIA_SUBGROUP 87 seqs
2.28.3.27.2.8244 OTU 2 seqs
prokMSA_id:9727 Pantoea agglomerans str. TAC.III.94.1
prokMSA_id:9728 clone thrips6.12
2.28.3.27.2.8437 OTU 10 seqs
prokMSA_id:9737 Edwardsiella tarda CDC 4411-68
prokMSA_id:10187 Edwardsiella tarda
prokMSA_id:22744 Edwardsiella tarda strain:NE8003
prokMSA_id:25008 Edwardsiella ictaluri complete 
prokMSA_id:28203 Edwardsiella tarda strain:Su100
prokMSA_id:33398 Edwardsiella tarda strain:E381
prokMSA_id:34178 Edwardsiella ictaluri 
prokMSA_id:40779 Edwardsiella hoshinae 
prokMSA_id:70016 Edwardsiella sp. AC8640 
prokMSA_id:74453 Edwardsiella tarda strain:NB8031
2.28.3.27.2.8672 OTU 1 seq
prokMSA_id:63114 clone MB-A2-149 
2.28.3.27.2.8742 OTU 1 seq
prokMSA_id:9665 str. KN4
2.28.3.27.2.8783 OTU 1 seq
prokMSA_id:9675 Alterococcus agarolyticus str. ADT3
2.28.3.27.2.8974 OTU 1 seq
prokMSA_id:9711 Salmonella agona str. Sa1
2.28.3.27.2.9135 OTU 1 seq
prokMSA_id:66560 amplicon H3
2.28.3.27.2.9358 OTU 66 seqs
prokMSA_id:9659 Escherichia coli =rrsD . U18997
prokMSA_id:9660 Hafnia alvei
prokMSA_id:9662 Shigella boydii
prokMSA_id:9668 Salmonella paratyphi
prokMSA_id:9669 Salmonella typhi str. St111
prokMSA_id:9670 Salmonella bovis subsp. morbificans str. Sbm1
prokMSA_id:9672 Escherichia coli str. PK3 =rrnB
prokMSA_id:9673 Escherichia coli str. CgSC No. 189 =rrsA
prokMSA_id:9676 Escherichia coli str. PK3
prokMSA_id:9678 Shigella flexneri str. Serovar 2a ATCC 29903
prokMSA_id:9679 Escherichia coli
prokMSA_id:9680 Shigella sonnei
prokMSA_id:9686 Shigella dysenteriae ATCC 13313
prokMSA_id:9691 Escherichia coli str. PK3 =rrnD
prokMSA_id:9692 Escherichia coli str. PK3 =rrnG
prokMSA_id:9693 Escherichia coli str. MC4100
prokMSA_id:9696 Escherichia coli str. PK3 =rrnC
prokMSA_id:9698 Shigella sonnei
prokMSA_id:9700 Shigella flexneri
prokMSA_id:9701 Escherichia coli =rrnB operon. V00348
prokMSA_id:9702 Escherichia coli str. MG1655 =rrsC
prokMSA_id:9704 Escherichia coli str. Seattle 1946 ATCC 25922
prokMSA_id:9706 Salmonella blockley str. Sb1
prokMSA_id:9707 Salmonella matopeni str. Sm1
prokMSA_id:9709 Salmonella paratyphi
prokMSA_id:9710 Salmonella paratyphi
prokMSA_id:9712 Salmonella bareilly str. Sb1
prokMSA_id:9713 Salmonella chingola str. Sch1
prokMSA_id:9714 Salmonella houten str. Sh1
prokMSA_id:9715 Salmonella waycross str. Swy1
prokMSA_id:9717 Escherichia coli str. MG1655 =rrsD . U00096
prokMSA_id:9719 Escherichia coli str. PK3 =
prokMSA_id:9721 Shigella dysenteriae
prokMSA_id:9741 Escherichia coli str. U 5/41 ATCC 11775
prokMSA_id:9751 Citrobacter koseri CDC 3613-63
prokMSA_id:9784 Klebsiella planticola JCM 7251
prokMSA_id:9785 Citrobacter koseri CDC 8132-86
prokMSA_id:24909 Escherichia coli K12 MG1655 section 296 of 400 of the comple
prokMSA_id:28107 coding of Escherichia coli
prokMSA_id:43594 clone p-4395-4Wa2 AF371931
prokMSA_id:46170 clone p-463-o3 
prokMSA_id:46776 Escherichia coli O157:H7 EDL933 genome contig 3 of 3 section
prokMSA_id:49240 Escherichia coli O157:H7 EDL933 genome contig 3 of 3 section
prokMSA_id:51124 Escherichia coli O157:H7 complete genome section 18/20 AP002
prokMSA_id:55738 amplicon H2
prokMSA_id:55807 Shigella flexneri 2a str. 301 section 305 of 412 of the comp
prokMSA_id:55834 Shigella flexneri 2a str. 301 section 243 of 412 of the comp
prokMSA_id:58039 Shigella flexneri 2a str. 301 section 18 of 412 of the compl
prokMSA_id:64392 Escherichia coli C2 AF403733
prokMSA_id:65406 Escherichia coli 
prokMSA_id:66566 amplicon H1
prokMSA_id:68951 Escherichia coli O157:H7 purH rrsE gltV rrlE rrfE yjaB metA 
prokMSA_id:68952 Escherichia coli O157:H7 clpB rrsG gltW rrlG rrfG kgtP genes
prokMSA_id:68955 Escherichia coli O157:H7 murI rrsB gltT rrlB rrfB murB genes
prokMSA_id:68956 Escherichia coli O157:H7 hemG rrsA ileT alaT rrlA rrfA mobB 
prokMSA_id:70983 Escherichia coli O157:H7 EDL933 genome contig 3 of 3 section
prokMSA_id:71151 Escherichia coli O157:H7 EDL933 genome contig 3 of 3 section
prokMSA_id:75507 Escherichia coli CFT073 section 15 of 18 of the complete gen
prokMSA_id:76445 Escherichia coli CFT073 section 13 of 18 of the complete gen
prokMSA_id:82658 Shigella flexneri 2a str. 2457T section 13 of 16 of the comp
prokMSA_id:83034 Shigella flexneri 2a str. 2457T section 12 of 16 of the comp
prokMSA_id:83296 Shigella flexneri 2a str. 2457T section 1 of 16 of the compl
prokMSA_id:83655 Shigella flexneri 2a str. 2457T section 14 of 16 of the comp
prokMSA_id:84714 Shigella flexneri 2a str. 2457T complete genome NC_004741
prokMSA_id:84906 Shigella flexneri 2a str. 2457T section 10 of 16 of the comp
prokMSA_id:86213 clone ABLCf4 
2.28.3.27.2.9496 OTU 3 seqs
prokMSA_id:9695 Escherichia coli str. MG1655 =rrsG
prokMSA_id:48448 Escherichia coli K12 MG1655 section 235 of 400 of the comple
prokMSA_id:51002 Escherichia coli K12 complete genome NC_000913
2.28.3.27.2.9632 OTU 1 seq
prokMSA_id:9732 unnamed organism
2.28.3.27.3 S.ENTERITIDIS_SUBGROUP 25 seqs
2.28.3.27.3.8567 OTU 1 seq
prokMSA_id:44391 Enterobacter cloacae strain TU-7A 
2.28.3.27.3.8886 OTU 22 seqs
prokMSA_id:9756 Salmonella typhi str. Ty2 ATCC 19430
prokMSA_id:9760 Salmonella typhimurium str. E10 NCTC 8391
prokMSA_id:9773 Salmonella typhimurium str. SGSC1412
prokMSA_id:17230 Salmonella typhimurium LT2 section 14 of 220 of the complete
prokMSA_id:26536 Salmonella typhimurium LT2 section 185 of 220 of the complet
prokMSA_id:27007 Salmonella enterica serovar Typhi Salmonella typhi strain CT
prokMSA_id:34689 Salmonella typhimurium LT2 section 124 of 220 of the complet
prokMSA_id:37413 Salmonella enterica subsp. enterica 
prokMSA_id:40959 Salmonella enterica serovar Typhimurium 
prokMSA_id:41705 Salmonella typhimurium LT2 complete genome NC_003197
prokMSA_id:51836 Salmonella typhimurium LT2 section 197 of 220 of the complet
prokMSA_id:52343 Salmonella typhimurium LT2 section 161 of 220 of the complet
prokMSA_id:54877 Salmonella typhimurium LT2 section 199 of 220 of the complet
prokMSA_id:54921 Salmonella typhimurium LT2 section 190 of 220 of the complet
prokMSA_id:65338 Salmonella enterica serovar Typhi Salmonella typhi strain CT
prokMSA_id:65339 Salmonella enterica serovar Typhi Salmonella typhi strain CT
prokMSA_id:72996 Salmonella enterica serovar Montevideo 
prokMSA_id:74428 Salmonella enterica serovar Dublin 
prokMSA_id:74497 Salmonella typhimurium fragment STMD1 AF233324
prokMSA_id:84433 Salmonella enterica subsp. enterica serovar Typhi Ty2 sectio
prokMSA_id:85807 Salmonella enterica subsp. enterica serovar Typhi Ty2 sectio
prokMSA_id:86258 Salmonella enterica subsp. enterica serovar Typhi Ty2 comple
2.28.3.27.3.9391 OTU 1 seq
prokMSA_id:49969 clone Car39fc 
2.28.3.27.3.9646 OTU 1 seq
prokMSA_id:9746 Enterobacter sakazakii str. Ct2 JCM 1233
2.28.3.27.4 PECTOBACTERIUM-ERWINIA_SUBGROUP 31 seqs
2.28.3.27.4.1 PCB.CAROTOVORUM_BETAVASCULORUM_SUBGROUP 17 seqs
2.28.3.27.4.1.8305 OTU 1 seq
prokMSA_id:9789 Erwinia cacticida
2.28.3.27.4.1.8313 OTU 1 seq
prokMSA_id:66727 Pectobacterium chrysanthemi strain 571 ; -23S intergenic spa
2.28.3.27.4.1.8319 OTU 1 seq
prokMSA_id:9796 Leminorella grimontii DSM 5078
2.28.3.27.4.1.8350 OTU 1 seq
prokMSA_id:9794 Pectobacterium carotovorum subsp. betavasculorum ATCC 43762
2.28.3.27.4.1.8558 OTU 3 seqs
prokMSA_id:9798 Pectobacterium chrysanthemi ATCC 11663
prokMSA_id:9800 Pectobacterium chrysanthemi LMG 2804
prokMSA_id:43232 Erwinia chrysanthemi strain DSM 4610
2.28.3.27.4.1.8637 OTU 1 seq
prokMSA_id:9802 Brenneria paradisiaca LMG 2542
2.28.3.27.4.1.8740 OTU 1 seq
prokMSA_id:73843 Pectobacterium chrysanthemi strain 573 ; -23S intergenic spa
2.28.3.27.4.1.9651 OTU 8 seqs
prokMSA_id:9790 Pectobacterium carotovorum subsp. atrosepticum LMG 2386
prokMSA_id:66741 Pectobacterium carotovorum subsp. atrosepticum strain 9205 ;
prokMSA_id:66743 Pectobacterium carotovorum subsp. atrosepticum strain 9204 ;
prokMSA_id:66744 Pectobacterium carotovorum subsp. atrosepticum strain 9201 ;
prokMSA_id:66745 Pectobacterium carotovorum subsp. atrosepticum strain 558 ; 
prokMSA_id:66746 Pectobacterium carotovorum subsp. atrosepticum strain 196 ; 
prokMSA_id:66747 Pectobacterium carotovorum subsp. atrosepticum strain 31 ; -
prokMSA_id:66749 Pectobacterium carotovorum subsp. atrosepticum strain GSPB 1
2.28.3.27.4.2 ER.AMYLOVORA_SUBGROUP 14 seqs
2.28.3.27.4.2.8379 OTU 2 seqs
prokMSA_id:20321 Erwinia amylovora 
prokMSA_id:26973 Erwinia herbicola 
2.28.3.27.4.2.9142 OTU 8 seqs
prokMSA_id:9831 Erwinia amylovora ATCC 15580
prokMSA_id:9832 Erwinia amylovora DSM 30165
prokMSA_id:9833 Erwinia amylovora str. Ea1/79
prokMSA_id:47069 E.amylovora 
prokMSA_id:70191 Erwinia amylovora strain BC203 
prokMSA_id:71495 Erwinia amylovora strain BC200 
prokMSA_id:73119 Erwinia amylovora strain BC204 
prokMSA_id:73185 Erwinia amylovora strain BC2280 
2.28.3.27.4.2.9252 OTU 1 seq
prokMSA_id:9821 Pantoea cedenensis str. A34
2.28.3.27.4.2.9345 OTU 3 seqs
prokMSA_id:9834 Erwinia pyrifoliae str. Ep1/96
prokMSA_id:9835 Erwinia amylovora LMG 2024
prokMSA_id:69975 Erwinia amylovora strain BC199 
2.28.3.27.5 CIT.BRAAKII_SUBGROUP 38 seqs
2.28.3.27.5.8554 OTU 21 seqs
prokMSA_id:9860 Klebsiella oxytoca ATCC 13182
prokMSA_id:10112 Klebsiella sp. str. BEC441
prokMSA_id:10114 clone vadinBB56
prokMSA_id:10134 Kluyvera georgiana str. CDC enteric ATCC 51603
prokMSA_id:16953 Kluyvera ascorbata strain CDC 0556/74 
prokMSA_id:17402 Klebsiella oxytoca 
prokMSA_id:24844 Kluyvera sp. IAL9555/98 
prokMSA_id:26295 Klebsiella oxytoca 
prokMSA_id:35654 Kluyvera sp. IAL9557/98 
prokMSA_id:44280 Kluyvera ascorbata AF008579
prokMSA_id:49488 Kluyvera ascorbata AF310219
prokMSA_id:51193 Kluyvera sp. IAL9558/98 
prokMSA_id:58286 Klebsiella oxytoca strain ChDC OS46 
prokMSA_id:65398 Serratia fonticola 
prokMSA_id:66564 amplicon J AJ487024
prokMSA_id:71543 Kluyvera ascorbata strain CDC 2064/78 AF176567
prokMSA_id:71835 Kluyvera ascorbata strain CDC 0648/74 AF176560
prokMSA_id:71892 Kluyvera ascorbata strain CDC 1058/74 AF176559
prokMSA_id:72250 Kluyvera ascorbata strain CDC 2066/78 
prokMSA_id:80910 Enterobacter kobei strain CIP 105566
prokMSA_id:94216 Klebsiella sp. rennanqilfy18 AY363386
2.28.3.27.5.8629 OTU 1 seq
prokMSA_id:9846 str. JSA
2.28.3.27.5.8632 OTU 1 seq
prokMSA_id:9847 str. TSA
2.28.3.27.5.8885 OTU 4 seqs
prokMSA_id:77662 gamma clone:APe2_17
prokMSA_id:77839 gamma clone:APe2_50 AB074626
prokMSA_id:85088 Morganella morganii strain:AP28
prokMSA_id:85614 Proteus vulgaris 
2.28.3.27.5.9202 OTU 3 seqs
prokMSA_id:52747 Activated sludge BC55 AF189697
prokMSA_id:66563 amplicon M
prokMSA_id:85693 Morganella morganii strain:87411
2.28.3.27.5.9307 OTU 1 seq
prokMSA_id:38855 Nitrogen-fixing CAN9B 
2.28.3.27.5.9363 OTU 5 seqs
prokMSA_id:9840 Citrobacter braakii CDC 080-58
prokMSA_id:9841 Citrobacter freundii CDC 621-64
prokMSA_id:9845 Citrobacter freundii DSM 30039
prokMSA_id:25734 Citrobacter sp. TSA-1 
prokMSA_id:83212 Citrobacter freundii strain WA1 
2.28.3.27.5.9594 OTU 2 seqs
prokMSA_id:77628 gamma clone:APe4_2 AB074622
prokMSA_id:85645 Morganella morganii strain: ATCC35200
2.28.3.27.6 PCB.CYPRIPEDII_SUBGROUP 1 seq
2.28.3.27.6.8758 OTU 1 seq
prokMSA_id:9861 Pectobacterium cypripedii ATCC 29267
2.28.3.27.7 PN.AGGLOMERANS_SUBGROUP 97 seqs
2.28.3.27.7.8282 OTU 1 seq
prokMSA_id:63942 Secondary endosymbiont of Antonina pretiosa and 23S genes 
2.28.3.27.7.8302 OTU 1 seq
prokMSA_id:27032 Enterobacter sp. B96 
2.28.3.27.7.8430 OTU 49 seqs
prokMSA_id:9778 Salmonella bongori str. 66:z41:- CIP 8233
prokMSA_id:9779 Salmonella bongori str. JEO 4162. AF029226
prokMSA_id:9808 Pantoea agglomerans str. A18
prokMSA_id:9838 Erwinia mallotivora str. AM1 DSM 4565
prokMSA_id:9839 Erwinia psidii LMG 7034
prokMSA_id:9854 Pantoea endophytica str. A14
prokMSA_id:9865 Pantoea ananatis LMG 2665
prokMSA_id:9869 Pantoea ananatis ATCC 33244
prokMSA_id:9873 Pantoea ananas JCM 6986
prokMSA_id:9874 Pantoea ananatis ATCC 19321
prokMSA_id:9876 Pantoea agglomerans str. A12
prokMSA_id:9879 Pantoea agglomerans str. A23
prokMSA_id:9880 Pantoea agglomerans str. A26
prokMSA_id:9883 Pantoea agglomerans str. A53
prokMSA_id:9887 Pantoea agglomerans str. A62
prokMSA_id:9888 Pantoea agglomerans str. A63. AF130933
prokMSA_id:9891 Pantoea agglomerans str. A71
prokMSA_id:9897 Pantoea agglomerans str. A9. AF130961
prokMSA_id:9908 Pantoea agglomerans str. A123. AF130884
prokMSA_id:9909 Pantoea agglomerans str. A126
prokMSA_id:9912 Pantoea agglomerans str. A19. AF130898
prokMSA_id:9913 Pantoea agglomerans str. A21
prokMSA_id:9914 Pantoea agglomerans str. A27. AF130905
prokMSA_id:9918 Pantoea agglomerans str. A41. AF130913
prokMSA_id:9920 Pantoea agglomerans str. A46
prokMSA_id:9921 Pantoea agglomerans str. A47
prokMSA_id:9924 Pantoea agglomerans str. A56
prokMSA_id:9926 Pantoea agglomerans str. A59. AF130929
prokMSA_id:9927 Pantoea agglomerans str. A61
prokMSA_id:9931 Pantoea agglomerans str. A72
prokMSA_id:9933 Pantoea agglomerans str. A74
prokMSA_id:9940 unnamed organism
prokMSA_id:9943 Enterobacter agglomerans LMG 2660. Z96083
prokMSA_id:10066 Tatumella ptyseos DSM 5000
prokMSA_id:10078 Pantoea endophytica str. A10. AF130889
prokMSA_id:10080 Pantoea endophytica str. A32. AF130908
prokMSA_id:10097 Pantoea agglomerans str. A15
prokMSA_id:10100 Pantoea endophytica str. A3. AF130956
prokMSA_id:10101 Pantoea A5 str. A5. AF130957
prokMSA_id:18430 Pantoea ananatis strain LMG 20106 
prokMSA_id:18836 Pantoea sp. 'Cibuni media isolate 74' 
prokMSA_id:21990 Pantoea ananatis strain LMG 20104 
prokMSA_id:33792 Enterobacter sp. IMD1260 
prokMSA_id:47117 Pantoea ananatis strain LMG 20105 
prokMSA_id:51158 Gamma MS-1 complete 
prokMSA_id:51850 Pantoea ananatis strain LMG 20103 
prokMSA_id:67501 Pantoea agglomerans strain 732 AY092079
prokMSA_id:71227 Enterobacter agglomerans strain A49 
prokMSA_id:97532 Pantoea agglomerans AY395010
2.28.3.27.7.8534 OTU 2 seqs
prokMSA_id:9870 Pantoea oleae str. A66
prokMSA_id:9871 Pantoea oleae str. A36
2.28.3.27.7.8590 OTU 1 seq
prokMSA_id:9947 Enterobacter pyrinus KCTC 2520
2.28.3.27.7.8693 OTU 35 seqs
prokMSA_id:9875 Pantoea agglomerans ATCC 33261
prokMSA_id:9877 Pantoea agglomerans str. A16
prokMSA_id:9878 Pantoea agglomerans str. A22
prokMSA_id:9881 Pantoea agglomerans str. A28
prokMSA_id:9884 Pantoea agglomerans str. A54
prokMSA_id:9885 Pantoea agglomerans str. A57
prokMSA_id:9886 Pantoea agglomerans str. A60
prokMSA_id:9889 Pantoea agglomerans str. A65
prokMSA_id:9890 Pantoea agglomerans str. A67
prokMSA_id:9892 Pantoea agglomerans str. A77
prokMSA_id:9893 Pantoea agglomerans str. A79
prokMSA_id:9894 Pantoea agglomerans str. A81
prokMSA_id:9895 Pantoea agglomerans str. A91
prokMSA_id:9896 Pantoea agglomerans str. A92
prokMSA_id:9900 Enterobacter agglomerans LMG 2565
prokMSA_id:9906 Pantoea agglomerans ATCC 33243
prokMSA_id:9910 Pantoea agglomerans str. A20
prokMSA_id:9915 Pantoea agglomerans str. A29
prokMSA_id:9917 Pantoea agglomerans str. A40
prokMSA_id:9919 Pantoea agglomerans str. A45
prokMSA_id:9922 Pantoea agglomerans str. A48
prokMSA_id:9923 Pantoea agglomerans str. A55
prokMSA_id:9925 Pantoea agglomerans str. A58
prokMSA_id:9930 Pantoea agglomerans str. A70
prokMSA_id:9932 Pantoea agglomerans str. A73
prokMSA_id:9934 Pantoea agglomerans str. A80
prokMSA_id:9935 Pantoea agglomerans str. A83
prokMSA_id:9936 Pantoea agglomerans str. A84
prokMSA_id:9937 Pantoea agglomerans str. A87
prokMSA_id:9941 Pantoea agglomerans str. drh1
prokMSA_id:18938 L3-17C7 
prokMSA_id:47393 Pantoea agglomerans strain DSM 3493
prokMSA_id:66729 Pantoea agglomerans strain LMG 2565 
prokMSA_id:70540 Erwinia herbicola 
prokMSA_id:73786 Pantoea agglomerans strain NCTC9381T
2.28.3.27.7.8700 OTU 3 seqs
prokMSA_id:79290 Baumannia cicadellinicola 
prokMSA_id:79577 Baumannia cicadellinicola 
prokMSA_id:80483 Baumannia cicadellinicola ; tRNA-Glu complete ; and 23S 
2.28.3.27.7.8716 OTU 1 seq
prokMSA_id:9868 unnamed organism
2.28.3.27.7.8811 OTU 1 seq
prokMSA_id:32418 Gamma-symbiont of Antonina crawii 
2.28.3.27.7.9302 OTU 3 seqs
prokMSA_id:9944 Pantoea stewartii subsp. stewartii str. SS11 ATCC 8199
prokMSA_id:9946 Pantoea stewartii subsp. stewartii str. SS11 LMG 2715
prokMSA_id:66728 Pantoea stewartii subsp. stewartii strain GSPB 2626 
2.28.3.27.8 WIGGLESWORTHIA_SYMBIONT_SUBGROUP 44 seqs
2.28.3.27.8.8207 OTU 2 seqs
prokMSA_id:9948 endosymbiont of Glossina palpalis
prokMSA_id:73925 Glossina palpalis P-endosymbiont 
2.28.3.27.8.8236 OTU 1 seq
prokMSA_id:63934 Secondary endosymbiont of Vryburgia amaryllidis and 23S gene
2.28.3.27.8.8343 OTU 1 seq
prokMSA_id:85178 Candidatus Blochmannia festinatus isolate Cfest14 
2.28.3.27.8.8393 OTU 1 seq
prokMSA_id:9949 endosymbiont of Glossina tachinoides
2.28.3.27.8.8398 OTU 1 seq
prokMSA_id:9951 Wigglesworthia glossinidia
2.28.3.27.8.8422 OTU 1 seq
prokMSA_id:9965 unnamed organism
2.28.3.27.8.8478 OTU 1 seq
prokMSA_id:48707 Endosymbiont of Camponotus balzani clone 12/1
2.28.3.27.8.8490 OTU 1 seq
prokMSA_id:9977 Yersinia sp. str. KM16
2.28.3.27.8.8504 OTU 2 seqs
prokMSA_id:63940 Secondary endosymbiont of Dysmicoccus brevipes and 23S genes
prokMSA_id:63945 Secondary endosymbiont of Dysmicoccus neobrevipes and 23S ge
2.28.3.27.8.8586 OTU 2 seqs
prokMSA_id:33643 Planococcus citri gamma- endosymbiont 
prokMSA_id:63935 Secondary endosymbiont of Planococcus citri and 23S genes 
2.28.3.27.8.8603 OTU 1 seq
prokMSA_id:63938 Secondary endosymbiont of Melanococcus albizziae and 23S gen
2.28.3.27.8.8607 OTU 1 seq
prokMSA_id:63939 Secondary endosymbiont of Amonostherium lichtensioides and 2
2.28.3.27.8.8609 OTU 1 seq
prokMSA_id:29373 Endosymbiont of Camponotus sericeiventris clone 6-6
2.28.3.27.8.8611 OTU 1 seq
prokMSA_id:9950 endosymbiont of Glossina austeni
2.28.3.27.8.8624 OTU 1 seq
prokMSA_id:63941 Secondary endosymbiont of Erium globosum and 23S genes 
2.28.3.27.8.8652 OTU 1 seq
prokMSA_id:74610 Endosymbiont of Camponotus socius clone 11/3
2.28.3.27.8.8683 OTU 1 seq
prokMSA_id:9987 str. SFr
2.28.3.27.8.8701 OTU 1 seq
prokMSA_id:52942 Secondary endosymbiont of Blastopsylla occidentalis ; interg
2.28.3.27.8.8801 OTU 4 seqs
prokMSA_id:9953 symbiont of Camponotus herculeanus
prokMSA_id:40380 Camponotus herculeanus endosymbiont strain USA
prokMSA_id:60411 Candidatus Blochmannia pennsylvanicus 
prokMSA_id:85963 Candidatus Blochmannia pennsylvanicus isolate Cpenn00 
2.28.3.27.8.8820 OTU 1 seq
prokMSA_id:9962 Wigglesworthia glossinidia
2.28.3.27.8.8866 OTU 4 seqs
prokMSA_id:9961 symbiont of Camponotus rufipes
prokMSA_id:9974 symbiont of Camponotus floridanus
prokMSA_id:21535 Endosymbiont of Camponotus rufipes clone 13/5
prokMSA_id:91372 Candidatus Blochmannia floridanus complete genome NC_005061
2.28.3.27.8.8954 OTU 7 seqs
prokMSA_id:9976 symbiont of secondary endosymbiont of Glossina pallidipes ts
prokMSA_id:9981 unnamed organism. U64869
prokMSA_id:9982 unnamed organism
prokMSA_id:9983 unnamed organism
prokMSA_id:9984 unnamed organism
prokMSA_id:95777 Sodalis glossinidius -23S operon complete AF548135
prokMSA_id:97799 Sodalis glossinidius -23S rrnB operon complete AF548136
2.28.3.27.8.9047 OTU 1 seq
prokMSA_id:53447 Secondary endosymbiont of Calophya schini ; intergenic space
2.28.3.27.8.9293 OTU 2 seqs
prokMSA_id:20928 Endosymbiont of Camponotus pennsylvanicus clone 14/7
prokMSA_id:42640 Endosymbiont of Camponotus castaneus clone 8/1
2.28.3.27.8.9290 OTU 2 seqs
prokMSA_id:79106 Baumannia cicadellinicola 
prokMSA_id:79588 Baumannia cicadellinicola 
2.28.3.27.8.9420 OTU 1 seq
prokMSA_id:39049 Endosymbiont of Camponotus abdominalis clone 4-2
2.28.3.27.8.9543 OTU 1 seq
prokMSA_id:27576 Secondary endosymbiont of Psylla ?floccosa 
2.28.3.27.9 PCB.CAROTOVORUM_CAROTOVORUM_SUBGROUP 19 seqs
2.28.3.27.9.8934 OTU 16 seqs
prokMSA_id:9792 Pectobacterium carotovorum subsp. betavasculorum LMG 2466
prokMSA_id:9988 Pectobacterium carotovorum subsp. carotovorum ATCC 15713
prokMSA_id:9989 Pectobacterium carotovorum subsp. carotovorum LMG 2404
prokMSA_id:9991 Pectobacterium carotovorum subsp. odoriferum LMG 17566
prokMSA_id:23248 Erwinia carotovora strain DSM 30168
prokMSA_id:66723 Pectobacterium chrysanthemi strain GSPB 1406 ; -23S intergen
prokMSA_id:66736 Pectobacterium carotovorum subsp. carotovorum strain E161 ; 
prokMSA_id:66737 Pectobacterium carotovorum subsp. carotovorum strain E155 ; 
prokMSA_id:66738 Pectobacterium carotovorum subsp. carotovorum strain GSPB 28
prokMSA_id:66739 Pectobacterium carotovorum subsp. carotovorum strain 441 ; -
prokMSA_id:66740 Pectobacterium carotovorum subsp. carotovorum strain 21 ; -2
prokMSA_id:70490 Pectobacterium carotovorum subsp. atrosepticum strain E1 ; -
prokMSA_id:72751 Pectobacterium chrysanthemi strain GSPB 413 
prokMSA_id:73789 Pectobacterium carotovorum subsp. odoriferum strain 1880 
prokMSA_id:73905 Pectobacterium carotovorum subsp. betavasculorum strain 29 ;
prokMSA_id:74117 Pectobacterium carotovorum subsp. odoriferum strain 1878 
2.28.3.27.9.9266 OTU 1 seq
prokMSA_id:9994 str. BEV
2.28.3.27.9.9268 OTU 1 seq
prokMSA_id:9995 unnamed organism
2.28.3.27.9.9406 OTU 1 seq
prokMSA_id:38096 Q3-24C22 
2.28.3.27.10 SER.MARCESCENS_SUBGROUP 13 seqs
2.28.3.27.10.8326 OTU 1 seq
prokMSA_id:10024 str. TIHP368-27
2.28.3.27.10.8467 OTU 7 seqs
prokMSA_id:10035 Serratia marcescens
prokMSA_id:10037 Serratia marcescens
prokMSA_id:31283 Serratia marcescens isolate HO2-A
prokMSA_id:41097 Serratia marcescens IRBG 501 
prokMSA_id:42000 Serratia marcescens 
prokMSA_id:59692 Pseudomonas fluorescens 
prokMSA_id:63599 Serratia marcescens strain AU736 
2.28.3.27.10.8599 OTU 2 seqs
prokMSA_id:9998 str. CA
prokMSA_id:10002 str. IN
2.28.3.27.10.8690 OTU 1 seq
prokMSA_id:85525 Serratia marcescens 
2.28.3.27.10.9106 OTU 1 seq
prokMSA_id:10001 str. DP
2.28.3.27.10.9348 OTU 1 seq
prokMSA_id:52626 Serratia marcescens isolate H170 
2.28.3.27.11 KLEBSIELLA_SUBGROUP 189 seqs
2.28.3.27.11.2 ENB.ASBURIAE_SUBGROUP 149 seqs
2.28.3.27.11.2.8505 OTU 14 seqs
prokMSA_id:10050 Buttiauxella agrestis DSM 4586
prokMSA_id:10051 Buttiauxella brennerae DSM 9396
prokMSA_id:10052 Buttiauxella ferragutiae DSM 9390
prokMSA_id:10053 Buttiauxella gaviniae DSM 9393
prokMSA_id:10054 Buttiauxella izardii DSM 9397
prokMSA_id:10055 Buttiauxella noackiae DSM 9401
prokMSA_id:10056 Buttiauxella warmboldiae DSM 9404
prokMSA_id:45264 Pantoea sp. 57917 
prokMSA_id:69815 Buttiauxella agrestis strain S3/3-203
prokMSA_id:69978 Buttiauxella noackiae strain BR 626
prokMSA_id:70049 Buttiauxella noackiae strain NSW11T ATCC 51607T
prokMSA_id:73164 Buttiauxella agrestis strain CDC 1176-81T ATCC 33320T
prokMSA_id:73465 Pantoea sp. 57916 
prokMSA_id:74207 Buttiauxella sp. LBV 449 
2.28.3.27.11.2.8528 OTU 7 seqs
prokMSA_id:10077 Enterobacter cloacae str. Nr. 3
prokMSA_id:34251 soil clone 431-1 
prokMSA_id:38852 soil clone 1389-1 
prokMSA_id:53373 soil clone 336-1 
prokMSA_id:56056 gamma clone ccslm2118 
prokMSA_id:70171 soil clone 624-1 
prokMSA_id:73497 soil clone 816-1 
2.28.3.27.11.2.8530 OTU 1 seq
prokMSA_id:72866 Enterobacteriaceae CF01Ent-1 isolate CF01Ent-1
2.28.3.27.11.2.8640 OTU 104 seqs
prokMSA_id:9667 Salmonella enteritidis str. SE22
prokMSA_id:9708 Salmonella weltevreden str. sw1. U90317
prokMSA_id:9753 Salmonella sp. str. ATCC 9712
prokMSA_id:9769 Salmonella typhimurium ATCC 13311
prokMSA_id:9772 Salmonella sp
prokMSA_id:9781 Salmonella sofia
prokMSA_id:9842 Citrobacter 'genomospecies 10' CDC 4693-86
prokMSA_id:9843 Citrobacter 'genomospecies 11' CDC 2970-59
prokMSA_id:9852 Citrobacter werkmanii CDC 0876-58
prokMSA_id:9853 Pantoea endophytica str. A1. AF130888
prokMSA_id:9857 Enterobacter gergoviae JCM 1234 . AB004748
prokMSA_id:10006 Serratia marcescens DSM 30121
prokMSA_id:10032 Serratia marcescens
prokMSA_id:10033 Serratia marcescens
prokMSA_id:10034 Serratia marcescens
prokMSA_id:10036 Serratia marcescens
prokMSA_id:10039 Enterobacter aerogenes JCM 1235
prokMSA_id:10041 Kluyvera cochleae str. S3/1-49 ATCC 51609 . AF047187
prokMSA_id:10064 Enterobacter asburiae str. 1497-78 JCM 6051
prokMSA_id:10079 Pantoea endophytica str. A13
prokMSA_id:10081 Pantoea endophytica str. A42
prokMSA_id:10082 Pantoea endophytica str. A6
prokMSA_id:10095 Enterobacter cancerogenus LMG 2693
prokMSA_id:10102 Pantoea agglomerans str. A8
prokMSA_id:10103 Pantoea sp. str. R8
prokMSA_id:10124 Klebsiella terrigena ATCC 33257
prokMSA_id:10125 Klebsiella terrigena str. SW4
prokMSA_id:10135 Serratia liquefaciens JCM 1245 . AB004752
prokMSA_id:10140 Enterobacter dissolvens LMG 2683
prokMSA_id:10143 Klebsiella pneumoniae. X87276
prokMSA_id:10144 Klebsiella pneumoniae DSM 30102. X93214
prokMSA_id:16603 Serratia marcescens isolate ZO1-A AJ296310
prokMSA_id:20073 sheep mite Caithness 8 
prokMSA_id:20148 Klebsiella pneumoniae subsp. ozaenae AF130982
prokMSA_id:20554 Escherichia coli O157:H7 EDL933 genome contig 1 of 3 section
prokMSA_id:20981 sheep mite Caithness 72 
prokMSA_id:21665 sheep mite Welshpool 31 
prokMSA_id:21806 Klebsiella terrigena strain ATCC 33257T AF129442
prokMSA_id:27869 sheep mite Caithness 25 AF289500
prokMSA_id:29399 sheep mite Caithness 32 AF289501
prokMSA_id:30637 Serratia marcescens isolate CPO14CU AJ296308
prokMSA_id:32480 Klebsiella pneumoniae subsp. rhinoscleromatis AF130983
prokMSA_id:35445 sheep mite Caithness 23 AF289499
prokMSA_id:35882 sheep mite Caithness 11 
prokMSA_id:37558 Klebsiella pneumoniae strain DM-5 AF390084
prokMSA_id:38659 Enterobacter aerogenes complete 
prokMSA_id:43455 Serratia marcescens isolate HO1-A
prokMSA_id:43889 Escherichia coli O157:H7 complete genome section 1/20 AP0025
prokMSA_id:46431 Serratia marcescens isolate RO1-A AJ302156
prokMSA_id:46459 Escherichia coli O157:H7 EDL933 genome contig 3 of 3 section
prokMSA_id:46645 Escherichia coli O157:H7 complete genome section 13/20 AP002
prokMSA_id:48916 Escherichia coli O157:H7 complete genome AE005174
prokMSA_id:49069 Escherichia coli O157:H7 EDL933 complete genome NC_002655
prokMSA_id:49498 Pantoea agglomerans AF321020
prokMSA_id:49908 Escherichia coli O157:H7 complete genome NC_002695
prokMSA_id:50412 Enterobacter sp. 16-31 AF126103
prokMSA_id:51811 Leclercia adecarboxylata strain WG 184
prokMSA_id:51865 Serratia marcescens isolate 90-166 AJ296306
prokMSA_id:53771 Enterobacter sp. 3-45 AF126102
prokMSA_id:54081 Serratia marcescens isolate WO1-A AJ296309
prokMSA_id:55739 Escherichia coli O157:H7 complete genome section 15/20 AP002
prokMSA_id:56115 Serratia marcescens strain AU1209 
prokMSA_id:56472 Serratia marcescens strain AU1388 AY043389
prokMSA_id:56537 Enterobacteriaceae PH29 AF513468
prokMSA_id:60328 clone Phe50 
prokMSA_id:60369 Enterobacteriaceae PH31 AF513469
prokMSA_id:61809 gamma clone CLs91 
prokMSA_id:61810 gamma clone CLs85 
prokMSA_id:61815 gamma clone CLs114 
prokMSA_id:61827 gamma clone CLi53 
prokMSA_id:62411 gamma clone FTL260 
prokMSA_id:63596 Klebsiella pneumoniae AY043391
prokMSA_id:63597 Morganella morganii AY043390
prokMSA_id:63598 Serratia marcescens strain AU664 AY043385
prokMSA_id:64270 Pantoea sp. P102 strain P102 
prokMSA_id:64272 Klebsiella pneumoniae strain 342 AF394537
prokMSA_id:65355 Cedecea neteri 
prokMSA_id:65407 Serratia marcescens 
prokMSA_id:66579 Escherichia coli isolate AK108 AY098487
prokMSA_id:68953 Escherichia coli O157:H7 yaeD rrsH ileV alaV rrlH rrfH aspU 
prokMSA_id:68954 Escherichia coli O157:H7 yrdA rrsD ileU alaU rrlD rrfD thrV 
prokMSA_id:70434 Escherichia coli O157:H7 EDL933 genome contig 3 of 3 section
prokMSA_id:70560 Enterobacter cloacae strain ATCC13047T AJ251469
prokMSA_id:71282 Enterobacter sp. 253a AY082447
prokMSA_id:71494 Leclercia adecarboxylata strain LBV 449
prokMSA_id:71762 Pantoea sp. P101 strain P101 
prokMSA_id:74266 Pantoea sp. YSS/2001-2 
prokMSA_id:75525 Escherichia coli CFT073 section 10 of 18 of the complete gen
prokMSA_id:77919 Enterobacter sp. TUT1014 
prokMSA_id:80575 Enterobacter hormaechei strain CIP 103441
prokMSA_id:82917 Cedecea davisae DSM 4568 
prokMSA_id:84051 Enterobacter sp. 2002-2301161 
prokMSA_id:84367 Serratia marcescens 
prokMSA_id:85034 Serratia marcescens strain N9 AF494202
prokMSA_id:85372 Enterobacter aerogenes 
prokMSA_id:90603 Klebsiella oxytoca strain NG14 AY302437
prokMSA_id:91042 G2 AY345398
prokMSA_id:91567 clone LWSR-26 AY345541
prokMSA_id:91628 clone GLB-2 AY345576
prokMSA_id:91733 clone GLS5 AY345581
prokMSA_id:92667 Serratia marcescens strain:HokM AB117954
prokMSA_id:93671 Core-2 AB111105
prokMSA_id:94946 Klebsiella pneumoniae AY369139
prokMSA_id:97959 Pantoea sp. NAB7 AY395011
2.28.3.27.11.2.8936 OTU 6 seqs
prokMSA_id:10108 Klebsiella oxytoca JCM 1665
prokMSA_id:10109 Klebsiella oxytoca str. 5725y
prokMSA_id:10110 Klebsiella oxytoca str. 5884
prokMSA_id:26469 Klebsiella oxytoca 
prokMSA_id:58294 Klebsiella oxytoca strain ChDC OS31 
prokMSA_id:71572 Klebsiella oxytoca 
2.28.3.27.11.2.9060 OTU 9 seqs
prokMSA_id:10075 Pantoea agglomerans str. ATTC27155 JCM 1236
prokMSA_id:10087 Enterobacter cloacae str. drh3
prokMSA_id:10088 Pantoea agglomerans str. 86350
prokMSA_id:27763 Pantoea agglomerans 
prokMSA_id:40056 clone p-2172-s959-3 
prokMSA_id:50084 clone p-2009-s959-5 
prokMSA_id:60334 clone Phe11 
prokMSA_id:60351 clone Caf17 
prokMSA_id:72445 sheep mite Welshpool 24 
2.28.3.27.11.2.9274 OTU 1 seq
prokMSA_id:86519 Enterobacter sp. CC1 
2.28.3.27.11.2.9283 OTU 1 seq
prokMSA_id:10085 str. SS-Unknown-1129
2.28.3.27.11.2.9361 OTU 4 seqs
prokMSA_id:10048 Enterobacter amnigenus JCM 1237
prokMSA_id:10092 Enterobacter intermedius str. Gavini E 86 JCM 1238
prokMSA_id:26797 gamma clone BIci26
prokMSA_id:91327 clone K2-30-20 AY344378
2.28.3.27.11.2.9368 OTU 1 seq
prokMSA_id:10115 Pragia fontium DSM 5563
2.28.3.27.11.2.9390 OTU 1 seq
prokMSA_id:10042 Enterobacter nimipressuralis LMG 10245
2.28.3.27.11.3 K.PLANTICOLA_SUBGROUP 17 seqs
2.28.3.27.11.3.8251 OTU 1 seq
prokMSA_id:24848 Nitrogen-fixing CANF3 
2.28.3.27.11.3.8529 OTU 8 seqs
prokMSA_id:10126 Klebsiella planticola ATCC 33531
prokMSA_id:10127 Klebsiella planticola DSM 3069
prokMSA_id:10128 Klebsiella ornithinolytica str. 590681
prokMSA_id:10132 Klebsiella Cd-1 str. Cd-1
prokMSA_id:35041 Klebsiella ornithinolytica 
prokMSA_id:49258 Klebsiella ornithinolytica 
prokMSA_id:73261 Klebsiella planticola 
prokMSA_id:74012 Klebsiella ornithinolytica strain JCM6096T
2.28.3.27.11.3.8627 OTU 1 seq
prokMSA_id:63943 Secondary endosymbiont of Australicoccus grevilleae and 23S 
2.28.3.27.11.3.8770 OTU 1 seq
prokMSA_id:66319 Br-35 
2.28.3.27.11.3.8890 OTU 6 seqs
prokMSA_id:10129 Klebsiella planticola str. 7444
prokMSA_id:10130 Klebsiella ornithinolytica str. FSK9555
prokMSA_id:10131 Klebsiella planticola str. DR3
prokMSA_id:84971 Raoultella planticola strain:4131
prokMSA_id:86319 Raoultella planticola strain:ATCC 43176
prokMSA_id:86680 Raoultella planticola strain:8433
2.28.3.27.11.4 K.PNEUMONIAE_SUBGROUP 23 seqs
2.28.3.27.11.4.8362 OTU 10 seqs
prokMSA_id:10139 Calymmatobacterium granulomatis str. KH 22
prokMSA_id:10155 Klebsiella pneumoniae. AF076033
prokMSA_id:10159 Klebsiella pneumoniae subsp. ozaenae str. I436. AF009170
prokMSA_id:44635 Klebsiella pneumoniae 
prokMSA_id:71955 Klebsiella pneumoniae subsp. pneumoniae AF228918
prokMSA_id:73579 Klebsiella singaporensis LX3 
prokMSA_id:86686 Klebsiella milletis 
prokMSA_id:87560 Klebsiella pneumoniae strain 542 AY291290
prokMSA_id:89119 Klebsiella pneumoniae isolate 521 AY292865
prokMSA_id:89511 Klebsiella pneumoniae isolate 1053 AY292866
2.28.3.27.11.4.8510 OTU 11 seqs
prokMSA_id:10142 Klebsiella pneumoniae subsp. ozaenae ATCC 11296
prokMSA_id:10148 Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884
prokMSA_id:10149 Klebsiella pneumoniae str. Klebs313
prokMSA_id:10151 Klebsiella pneumoniae subsp. pneumoniae ATCC 13883
prokMSA_id:10153 Klebsiella pneumoniae subsp. pneumoniae JCM 1662
prokMSA_id:27939 Klebsiella pneumoniae strain DSM 30104
prokMSA_id:29091 Klebsiella sp. KG1 
prokMSA_id:63980 Klebsiella pneumoniae 
prokMSA_id:71139 Klebsiella pneumoniae subsp. ozaenae 
prokMSA_id:72626 Klebsiella pneumoniae 
prokMSA_id:73274 Klebsiella pneumoniae 
2.28.3.27.11.4.8773 OTU 1 seq
prokMSA_id:43351 Klebsiella pneumoniae 
2.28.3.27.11.4.9341 OTU 1 seq
prokMSA_id:37741 Nitrogen-fixing CC262C 
2.28.3.27.12 SER.FICARIA_SUBGROUP 45 seqs
2.28.3.27.12.8286 OTU 1 seq
prokMSA_id:63944 Secondary endosymbiont of Cyphonococcus alpinus and 23S gene
2.28.3.27.12.8388 OTU 7 seqs
prokMSA_id:10162 symbiont of symbiont S of Acyrthosiphon pisum
prokMSA_id:26800 Secondary symbiont of Acyrthosiphon pisum 
prokMSA_id:27697 Secondary symbiont of Acyrthosiphon pisum 
prokMSA_id:31810 Secondary symbiont -R of Acyrthosiphon pisum rrs 
prokMSA_id:33363 Secondary symbiont of Acyrthosiphon pisum 
prokMSA_id:37966 Secondary symbiont -R of Uroleucon caligatum rrs 
prokMSA_id:82660 Secondary symbiont -R of Acyrthosiphon pisum clone Wisconsin
2.28.3.27.12.8711 OTU 2 seqs
prokMSA_id:10171 Serratia odorifera DSM 4582
prokMSA_id:43863 Serratia odorifera DSM 4582 
2.28.3.27.12.8712 OTU 11 seqs
prokMSA_id:10170 Serratia grimesii DSM 30063
prokMSA_id:10173 Serratia proteamaculans DSM 4543
prokMSA_id:10174 Serratia proteamaculans DSM 4597
prokMSA_id:24212 Serratia grimesii LMG 7883 
prokMSA_id:24791 Serratia proteamaculans quinovora strain CP6g
prokMSA_id:27899 Serratia liquefaciens strain CIP 103238T
prokMSA_id:30445 Enterobacteriaceae sp. JM983 isolate JM983
prokMSA_id:47869 Serratia proteamaculans quinovora strain CP6d
prokMSA_id:64290 Serratia proteamaculans 
prokMSA_id:73291 Serratia proteamaculans subsp. quinovora LMG 7887 
prokMSA_id:83887 Serratia liquefaciens 
2.28.3.27.12.8739 OTU 8 seqs
prokMSA_id:10163 Serratia ficaria JCM 1241
prokMSA_id:10167 Serratia entomophila DSM 12358
prokMSA_id:10168 Serratia ficaria DSM 4569
prokMSA_id:10172 Serratia plymuthica DSM 4540. AJ233433
prokMSA_id:20233 Serratia plymuthica DSM 4540 
prokMSA_id:30328 Serratia sp. White strain White AJ417371
prokMSA_id:30929 Serratia ficaria strain NCTC 12148
prokMSA_id:45752 Serratia plymuthica strain RK
2.28.3.27.12.8892 OTU 8 seqs
prokMSA_id:10181 Aranicola proteolyticus
prokMSA_id:20361 clone 228 AJ310680
prokMSA_id:30517 clone 244 AJ310681
prokMSA_id:30806 Serratia proteamaculans quinovora strain CP6f
prokMSA_id:33909 Serratia proteamaculans quinovora strain PC1 AJ279053
prokMSA_id:41789 clone 231
prokMSA_id:52641 Serratia proteamaculans quinovora strain CP6a
prokMSA_id:85224 Serratia liquefaciens 
2.28.3.27.12.9151 OTU 2 seqs
prokMSA_id:53341 clone Car36rc 
prokMSA_id:54261 clone Car35rc 
2.28.3.27.12.9196 OTU 1 seq
prokMSA_id:10180 Aquamonas haywardensis str. EG121 CDC 2404-94
2.28.3.27.12.9417 OTU 5 seqs
prokMSA_id:10169 Serratia fonticola DSM 4576
prokMSA_id:25598 Serratia proteamaculans quinovora strain Ox1a AJ279052
prokMSA_id:33276 Serratia fonticola strain IB4
prokMSA_id:34707 Serratia fonticola LMG 7882 
prokMSA_id:82090 Serratia fonticola UTAD54 
2.28.3.27.13 XENORHABDUS_SUBGROUP 166 seqs
2.28.3.27.13.1 BEMISIA_SYMBIONT 24 seqs
2.28.3.27.13.1.9325 OTU 24 seqs
prokMSA_id:10185 symbiont of Bemisia tabaci sweet potato whitefly
prokMSA_id:17365 Secondary endosymbiont of Bemisia tabaci clone CALA 
prokMSA_id:19360 Secondary symbiont -T of Uroleucon ambrosiae isolate T- rrs 
prokMSA_id:20242 Secondary endosymbiont of Bemisia tabaci clone AZB 
prokMSA_id:24843 Secondary symbiont -T of Uroleucon rudbeckiae rrs 
prokMSA_id:28464 Secondary endosymbiont of Bemisia tabaci clone JATPR 
prokMSA_id:35772 Secondary symbiont -T of Uroleucon ambrosiae isolate T- rrs 
prokMSA_id:36537 Secondary endosymbiont of Bemisia tabaci clone TANZ3-1 
prokMSA_id:42775 gamma DAC-2000 
prokMSA_id:43876 Secondary endosymbiont of Bemisia tabaci clone ISR5 
prokMSA_id:50332 Secondary endosymbiont of Bemisia tabaci clone MEX4 
prokMSA_id:50515 Secondary symbiont -T of Acyrthosiphon pisum rrs 
prokMSA_id:51366 Secondary endosymbiont of Bemisia tabaci clone AZA 
prokMSA_id:51838 Secondary endosymbiont of Bemisia tabaci clone CULMX 
prokMSA_id:83342 Secondary symbiont -T of Uroleucon pieloui 
prokMSA_id:83831 Secondary symbiont -T of Aphis craccivora 
prokMSA_id:83862 Secondary symbiont -T of Uroleucon nigrotuberculatum 
prokMSA_id:84832 Secondary symbiont -T of Pemphigus spyrothecae 
prokMSA_id:84895 Secondary symbiont -T of Macrosiphum euphorbiae 
prokMSA_id:84922 Secondary symbiont -T of Acyrthosiphon pisum 
prokMSA_id:85003 Secondary symbiont -T of Periphyllus bulgaricus 
prokMSA_id:85992 Secondary symbiont -T of Uroleucon reynoldense 
prokMSA_id:86586 Secondary symbiont -T of Cacopsylla pyri 
prokMSA_id:90074 Secondary endosymbiont of Bemisia tabaci ; tRNA-Glu complete
2.28.3.27.13.2 SER.RUBIDAEA_SUBGROUP 4 seqs
2.28.3.27.13.2.8630 OTU 3 seqs
prokMSA_id:10186 Serratia rubidaea str. Ewing 2199- JCM 1240
prokMSA_id:10189 Serratia rubidaea str. Ewing 2199- DSM 4480
prokMSA_id:10192 Serratia rubidaea str. IEGN11. AB030922
2.28.3.27.13.2.8775 OTU 1 seq
prokMSA_id:10194 str. TIHP368-30
2.28.3.27.13.3 BN.RUBRIFACIENS_SUBGROUP 9 seqs
2.28.3.27.13.3.8631 OTU 1 seq
prokMSA_id:63937 Secondary endosymbiont of Planococcus ficus and 23S genes 
2.28.3.27.13.3.8842 OTU 3 seqs
prokMSA_id:10197 Brenneria rubrifaciens ATCC 29291
prokMSA_id:10198 Brenneria rubrifaciens LMG 2709
prokMSA_id:51229 Erwinia rubrifaciens strain DSM 4483
2.28.3.27.13.3.9082 OTU 3 seqs
prokMSA_id:10196 Brenneria quercina LMG 2724
prokMSA_id:10199 Brenneria salicis ATCC 15712
prokMSA_id:10200 Brenneria quercina DSM 4561
2.28.3.27.13.3.9475 OTU 2 seqs
prokMSA_id:10201 Brenneria salicis LMG 2698
prokMSA_id:46931 Erwinia salicis strain DSM 30166
2.28.3.27.13.4 P.VULGARIS_SUBGROUP 32 seqs
2.28.3.27.13.4.8165 OTU 1 seq
prokMSA_id:10211 str. OR
2.28.3.27.13.4.8182 OTU 18 seqs
prokMSA_id:10205 Proteus vulgaris IFAM 1731
prokMSA_id:10206 Proteus vulgaris DSM 30118
prokMSA_id:18414 Proteus vulgaris strain CIP103181T
prokMSA_id:19524 Proteus mirabilis strain CIP103181T
prokMSA_id:19687 Proteus mirabilis 
prokMSA_id:27167 Proteus mirabilis 
prokMSA_id:37204 Proteus vulgaris 
prokMSA_id:75554 Swine manure RT-4D 
prokMSA_id:75572 Swine manure RT-3B 
prokMSA_id:75783 Swine manure RT-2B 
prokMSA_id:76116 Swine manure RT-4A 
prokMSA_id:76139 Swine manure RT-2C 
prokMSA_id:76398 Swine manure RT-13A 
prokMSA_id:76558 Swine manure RT-2D 
prokMSA_id:76689 Swine manure RT-10A 
prokMSA_id:76776 Swine manure RT-4C 
prokMSA_id:76918 Swine manure RT-6A 
prokMSA_id:77224 Swine manure RT-3C 
2.28.3.27.13.4.8217 OTU 1 seq
prokMSA_id:21132 from Aleurodicus dugesii 
2.28.3.27.13.4.8283 OTU 1 seq
prokMSA_id:54964 Secondary endosymbiont of Heteropsylla texana ; intergenic s
2.28.3.27.13.4.8450 OTU 1 seq
prokMSA_id:40697 Morganella morganii 
2.28.3.27.13.4.8968 OTU 1 seq
prokMSA_id:82772 Morganella morganii 
2.28.3.27.13.4.9385 OTU 7 seqs
prokMSA_id:33418 Secondary endosymbiont of Bemisia tabaci clone UG26 
prokMSA_id:85281 Symbiont of Myzocallis sp
prokMSA_id:86038 Symbiont of Wahlgreniella nervata AY136168
prokMSA_id:88430 Arsenophonus endosymbiont of Australiococcus greville ; tRNA
prokMSA_id:88445 Arsenophonus endosymbiont of Acanthaleyrodes styraci ; tRNA-
prokMSA_id:88455 Arsenophonus endosymbiont of Neomaskellia andropogonis ; tRN
prokMSA_id:89143 Arsenophonus endosymbiont of Aleuroplatus gelatinosus ; tRNA
2.28.3.27.13.4.9600 OTU 1 seq
prokMSA_id:10203 Phlomobacter fragariae str. france
2.28.3.27.13.4.9603 OTU 1 seq
prokMSA_id:10204 unnamed organism
2.28.3.27.13.5 XEN.NEMATOPHILUS_SUBGROUP 97 seqs
2.28.3.27.13.5.8173 OTU 5 seqs
prokMSA_id:10217 Photorhabdus luminescens str. Tn-5*2
prokMSA_id:10225 Photorhabdus luminescens ATCC 43949
prokMSA_id:10226 Photorhabdus luminescens ATCC 43952
prokMSA_id:10227 Photorhabdus luminescens ATCC 43951
prokMSA_id:10228 Photorhabdus luminescens ATCC 43950
2.28.3.27.13.5.8225 OTU 2 seqs
prokMSA_id:84257 Symbiont of Pemphigus populi 
prokMSA_id:84718 Symbiont of Tetraneura ulmi 
2.28.3.27.13.5.8300 OTU 1 seq
prokMSA_id:10299 Xenorhabdus beddingii DSM 4764
2.28.3.27.13.5.8642 OTU 26 seqs
prokMSA_id:9787 Pectobacterium carotovorum subsp. wasabiae str. SR 91 ATCC 4
prokMSA_id:9788 Erwinia carotovora subsp. wasabiae ICMP 9121
prokMSA_id:10239 Xenorhabdus nematophilus DSM 3370
prokMSA_id:10240 Xenorhabdus nematophilus str. N2-4
prokMSA_id:10241 Xenorhabdus nematophilus str. RIOBRAVIS
prokMSA_id:10298 Xenorhabdus beddingii DSM 4764
prokMSA_id:10300 Xenorhabdus nematophilus ATCC 19061
prokMSA_id:61196 Dickeya dieffenbachiae AF520712
prokMSA_id:61197 Dickeya zeae strain CFBP 2052 AF520711
prokMSA_id:61200 Erwinia chrysanthemi strain CFBP 1270 AF520709
prokMSA_id:61202 Dickeya dadantii AF520707
prokMSA_id:61203 Dickeya dianthicola AF520708
prokMSA_id:63456 Xenorhabdus nematophila complete 
prokMSA_id:66731 Pectobacterium carotovorum subsp. wasabiae strain 92 AF37319
prokMSA_id:66732 Pectobacterium carotovorum subsp. wasabiae strain 91 
prokMSA_id:66748 Pectobacterium chrysanthemi strain 340 AF373173
prokMSA_id:66750 Pectobacterium chrysanthemi strain 582 AF373175
prokMSA_id:72670 Pectobacterium carotovorum subsp. wasabiae strain 93 
prokMSA_id:72805 Pectobacterium chrysanthemi strain 580 ; -23S intergenic spa
prokMSA_id:81553 Pectobacterium carotovorum subsp. brasiliensis strain 212T A
prokMSA_id:82259 Pectobacterium carotovorum subsp. brasiliensis strain 8 AY20
prokMSA_id:82434 Pectobacterium carotovorum subsp. brasiliensis strain 371 
prokMSA_id:85814 Photorhabdus sp. Q614 
prokMSA_id:87839 Xenorhabdus nematophila AY286478
prokMSA_id:87960 Xenorhabdus nematophila AY278674
prokMSA_id:93777 Erwinia chrysanthemi strain S3-1 AY360397
2.28.3.27.13.5.8684 OTU 4 seqs
prokMSA_id:86576 Photorhabdus luminescens subsp. thraceaensis strain DSM 1519
prokMSA_id:87480 Photorhabdus sp. KOH AY278667
prokMSA_id:87583 Photorhabdus sp. Az29 AY278668
prokMSA_id:87761 Photorhabdus sp. MOL AY278669
2.28.3.27.13.5.8715 OTU 4 seqs
prokMSA_id:10244 Xenorhabdus bovienii ATCC 35271
prokMSA_id:10246 Xenorhabdus bovienii DSM 4766
prokMSA_id:10247 Xenorhabdus OS21 str. OS21. AF079816
prokMSA_id:89531 Xenorhabdus bovienii strain CB54 AY317154
2.28.3.27.13.5.8846 OTU 1 seq
prokMSA_id:10245 Xenorhabdus poinarii DSM 4768
2.28.3.27.13.5.8862 OTU 26 seqs
prokMSA_id:10219 Photorhabdus luminescens str. V6-1
prokMSA_id:10221 Photorhabdus luminescens str. HP88. Z76743
prokMSA_id:10222 Photorhabdus luminescens str. Brecon
prokMSA_id:10224 Photorhabdus luminescens str. Q614
prokMSA_id:10231 Photorhabdus luminescens str. LN2
prokMSA_id:17167 Photorhabdus luminescens subsp. laumondii strain TUR1 AJ2951
prokMSA_id:46111 Photorhabdus luminescens subsp. laumondii strain TT01
prokMSA_id:72527 Photorhabdus luminescens subsp. akhurstii strain FRG0 
prokMSA_id:74806 Photorhabdus luminescens subsp. laumondii strain TUR2
prokMSA_id:83069 Photorhabdus luminescens subsp. kayaii tyep strain DSM 15194
prokMSA_id:85007 Photorhabdus luminescens subsp. laumondii strain DSM 15195 A
prokMSA_id:85557 Photorhabdus luminescens subsp. kayaii strain DSM 15198
prokMSA_id:85843 Photorhabdus luminescens subsp. kayaii strain DSM 15197
prokMSA_id:86788 Photorhabdus luminescens subsp. laumondii strain Az36 AY2786
prokMSA_id:86852 Photorhabdus luminescens subsp. laumondii strain ARG AY27865
prokMSA_id:87048 Photorhabdus luminescens subsp. laumondii strain TT01 AY2786
prokMSA_id:87446 Photorhabdus luminescens subsp. laumondii strain Brecon AY27
prokMSA_id:87568 Photorhabdus luminescens subsp. akhurstii strain IS5 AY27864
prokMSA_id:87663 Photorhabdus luminescens subsp. laumondii strain HP88 AY2786
prokMSA_id:94459 Photorhabdus luminescens subsp. laumondii TTO1 complete geno
prokMSA_id:94735 Photorhabdus luminescens subsp. laumondii TTO1 complete geno
prokMSA_id:95015 Photorhabdus luminescens subsp. laumondii TTO1 complete geno
prokMSA_id:95017 Photorhabdus luminescens subsp. laumondii TTO1 complete geno
prokMSA_id:95065 Photorhabdus luminescens subsp. laumondii TTO1 complete geno
prokMSA_id:95127 Photorhabdus luminescens subsp. laumondii TTO1 complete geno
prokMSA_id:98744 Photorhabdus luminescens subsp. laumondii TTO1 complete geno
2.28.3.27.13.5.8907 OTU 1 seq
prokMSA_id:10255 Xenorhabdus japonicus str. SK-1
2.28.3.27.13.5.9029 OTU 4 seqs
prokMSA_id:81918 Photorhabdus asymbiotica 
prokMSA_id:91045 Photorhabdus asymbiotica strain 9802892 AY280572
prokMSA_id:91807 Photorhabdus asymbiotica strain GCH001 AY280574
prokMSA_id:91820 Photorhabdus asymbiotica strain MB AY280573
2.28.3.27.13.5.9098 OTU 3 seqs
prokMSA_id:10260 Photorhabdus NP1 str. NP1. AF079811
prokMSA_id:10261 Photorhabdus OH10 str. OH10. AF079812
prokMSA_id:10262 Photorhabdus SJ2 str. SJ2
2.28.3.27.13.5.9264 OTU 19 seqs
prokMSA_id:10257 Photorhabdus luminescens DSM 3369
prokMSA_id:10258 Photorhabdus luminescens ATCC 29304
prokMSA_id:10264 Photorhabdus luminescens str. WX2
prokMSA_id:10265 Photorhabdus luminescens str. WX11
prokMSA_id:10266 Photorhabdus luminescens str. Mge1
prokMSA_id:10267 Photorhabdus luminescens str. Meg2
prokMSA_id:10282 Photorhabdus luminescens str. Ehlers HSH2
prokMSA_id:10293 Photorhabdus luminescens str. PE 87.3
prokMSA_id:30793 Photorhabdus temperata strain XINach
prokMSA_id:86723 Photorhabdus temperata strain Wx10 AY278663
prokMSA_id:86767 Photorhabdus temperata strain Wx9 AY278661
prokMSA_id:86932 Photorhabdus temperata strain Meg1 AY278655
prokMSA_id:87111 Photorhabdus temperata strain NC19 AY278657
prokMSA_id:87269 Photorhabdus temperata strain Wx11 AY278664
prokMSA_id:87486 Photorhabdus temperata strain K122 AY278651
prokMSA_id:87645 Photorhabdus temperata strain HL81 AY278653
prokMSA_id:87936 Photorhabdus temperata strain H4 AY278654
prokMSA_id:87965 Photorhabdus temperata strain Heliothidis AY278658
prokMSA_id:88052 Photorhabdus temperata strain Wx9Hyper AY278662
2.28.3.27.13.5.9502 OTU 1 seq
prokMSA_id:41267 Secondary symbiont -U of Uroleucon aenum rrs 
2.28.3.27.14 YERSINIA_SUBGROUP 86 seqs
2.28.3.27.14.1 BN.NIGRIFLUENS_SUBGROUP 4 seqs
2.28.3.27.14.1.9276 OTU 1 seq
prokMSA_id:10303 Obesumbacterium proteus DSM 2777
2.28.3.27.14.1.9327 OTU 3 seqs
prokMSA_id:10307 Brenneria nigrifluens ATCC 13028
prokMSA_id:10308 Brenneria nigrifluens LMG 2694
prokMSA_id:45637 Erwinia nigrifluens strain DSM 30175
2.28.3.27.14.2 ER.AMERICANA_SUBGROUP 17 seqs
2.28.3.27.14.2.8473 OTU 11 seqs
prokMSA_id:10302 Hafnia alvei ATCC 13337 . M59155
prokMSA_id:10310 Rahnella 'CDC 1-576' CDC 1-576
prokMSA_id:10311 Rahnella 'CDC 21234' CDC 21234
prokMSA_id:10312 Rahnella 'CDC 658-79' CDC 658-79
prokMSA_id:10313 Rahnella 'CDC Bonn7' CDC Bonn7
prokMSA_id:10314 Rahnella 'CDC Italy 2383' str. 2383 CDC Italy
prokMSA_id:10316 unnamed organism
prokMSA_id:70669 amplicon K
prokMSA_id:84587 Hafnia alvei isolate m 49 
prokMSA_id:85035 Rahnella aquatilis m 46 
prokMSA_id:86541 Hafnia alvei isolate k 43 
2.28.3.27.14.2.8761 OTU 3 seqs
prokMSA_id:28751 Buchnera aphidicola Yamatocallis tokyoensis isolate:#526 sec
prokMSA_id:43984 Buchnera aphidicola Yamatocallis tokyoensis isolate:#525 sec
prokMSA_id:47317 Buchnera aphidicola Yamatocallis tokyoensis isolate:#566 sec
2.28.3.27.14.2.9265 OTU 1 seq
prokMSA_id:84349 Rahnella aquatilis isolate k 8 
2.28.3.27.14.2.9326 OTU 1 seq
prokMSA_id:27646 GKS2-91 
2.28.3.27.14.2.9337 OTU 1 seq
prokMSA_id:10315 Rahnella genosp. 3 DSM 30078
2.28.3.27.14.3 RAH.AQUATILIS_SUBGROUP 8 seqs
2.28.3.27.14.3.8564 OTU 7 seqs
prokMSA_id:10331 Rahnella aquatilis str. 334. X79936
prokMSA_id:10333 Rahnella 'CDC 2987-79' CDC 2987-79
prokMSA_id:10334 Rahnella aquatilis CDC 1327-79
prokMSA_id:10335 Rahnella aquatilis DSM 4594
prokMSA_id:10336 Rahnella aquatilis str. 339. X79938
prokMSA_id:10340 Rahnella aquatilis ATCC 33989. X79939
prokMSA_id:78192 Rahnella aquatilis isolate:YL-1 AB087712
2.28.3.27.14.3.8686 OTU 1 seq
prokMSA_id:10332 clone LRE12
2.28.3.27.14.4 YER.ENTEROCOLITICA_SUBGROUP 1 seq
2.28.3.27.14.4.9436 OTU 1 seq
prokMSA_id:10343 Budvicia aquatica DSM 5075
2.28.3.27.14.5 YER.PESTIS_SUBGROUP 56 seqs
2.28.3.27.14.5.8649 OTU 1 seq
prokMSA_id:10394 Yersinia aldovae ATCC 35236
2.28.3.27.14.5.9157 OTU 4 seqs
prokMSA_id:29699 Secondary symbiont -U of Uroleucon astronomus rrs 
prokMSA_id:42020 Secondary symbiont -U of Acyrthosiphon pisum rrs 
prokMSA_id:50997 Secondary symbiont -U of Uroleucon solidaginis rrs 
prokMSA_id:85563 Secondary symbiont -U of Acyrthosiphon pisum 
2.28.3.27.14.5.9262 OTU 26 seqs
prokMSA_id:10341 Yersinia enterocolitica
prokMSA_id:10342 Yersinia enterocolitica str. ER-3206-92
prokMSA_id:10345 Yersinia enterocolitica str. ER-26036-92. Z49829
prokMSA_id:10346 Yersinia enterocolitica str. O:3 108 c
prokMSA_id:10347 Yersinia enterocolitica str. German
prokMSA_id:10348 Yersinia enterocolitica
prokMSA_id:10349 Yersinia enterocolitica str. ER-31406-92
prokMSA_id:10363 Yersinia ruckeri ATCC 29473
prokMSA_id:10386 Yersinia sp
prokMSA_id:10389 Yersinia enterocolitica. X68672
prokMSA_id:10391 Yersinia sp
prokMSA_id:10393 Yersinia rohdei str. ER-2935 ATCC 43380
prokMSA_id:17691 Yersinia intermedia 
prokMSA_id:17733 Yersinia kristensenii 
prokMSA_id:23050 Yersinia pseudotuberculosis strain R 708 LY AF365948
prokMSA_id:23716 Yersinia pseudotuberculosis strain R 1505 AF365950
prokMSA_id:28126 Yersinia pseudotuberculosis strain 1147 AF365945
prokMSA_id:34461 Yersinia rohdei 
prokMSA_id:37259 Yersinia mollaretii 
prokMSA_id:38612 Yersinia pseudotuberculosis strain Kuratani-2 AF365936
prokMSA_id:39860 Yersinia aldovae 
prokMSA_id:41539 Yersinia enterocolitica 
prokMSA_id:41642 Yersinia bercovieri AF366377
prokMSA_id:41648 Yersinia frederiksenii 
prokMSA_id:50988 Yersinia ruckeri 
prokMSA_id:52901 Yersinia enterocolitica 
2.28.3.27.14.5.9346 OTU 23 seqs
prokMSA_id:10366 Yersinia pseudotuberculosis str. Serotype III 1B1 B28 W.W.
prokMSA_id:10369 Yersinia pestis str. SS-Yp-09. AJ232224
prokMSA_id:10371 Yersinia pestis str. SS-Yp-102. AJ232226
prokMSA_id:10372 Yersinia pestis str. SS-Yp-103. AJ232227
prokMSA_id:10373 Yersinia pestis str. SS-Yp-104. AJ232228
prokMSA_id:10375 Yersinia pestis str. SS-Yp-106. AJ232230
prokMSA_id:10380 Yersinia pestis str. SS-Yp-113. AJ232235
prokMSA_id:10381 Yersinia pestis str. SS-Yp-114. AJ232236
prokMSA_id:10384 Yersinia pestis str. SS-Yp-117. AJ232239
prokMSA_id:10388 Yersinia pestis str. D-28 ATCC 19428 . X75274
prokMSA_id:18014 Yersinia pseudotuberculosis 
prokMSA_id:22202 Yersinia pseudotuberculosis strain 2883 
prokMSA_id:25758 Yersinia pseudotuberculosis strain 151 
prokMSA_id:30561 Yersinia pseudotuberculosis strain 204 
prokMSA_id:37543 Yersinia pseudotuberculosis strain 49 
prokMSA_id:42238 Yersinia pseudotuberculosis strain 51 
prokMSA_id:42764 Yersinia pseudotuberculosis strain 197 AF365944
prokMSA_id:46996 Yersinia pseudotuberculosis strain 6088 
prokMSA_id:52382 Yersinia pseudotuberculosis strain 212 
prokMSA_id:56451 Yersinia pestis KIM section 2 of 415 of the complete genome 
prokMSA_id:57519 Yersinia pestis strain CO92 complete genome; segment 19/20 A
prokMSA_id:57521 Yersinia pestis strain CO92 complete genome; segment 1/20
prokMSA_id:63168 Yersinia pestis KIM section 385 of 415 of the complete genom
2.28.3.27.14.5.9408 OTU 2 seqs
prokMSA_id:85221 Secondary symbiont -U of Chaitophorus populeti 
prokMSA_id:86615 Secondary symbiont -U of Brachycaudus cardui 
2.28.3.27.15 PLE.SHIGELLOIDES_SUBGROUP 2 seqs
2.28.3.27.15.8650 OTU 2 seqs
prokMSA_id:10395 Plesiomonas shigelloides str. M51 NCIMB 9242
prokMSA_id:10396 Plesiomonas shigelloides str. M51 CIP 63.5 . X74688
2.28.4 DELTA_SUBDIVISION 995 seqs
2.28.4.1 DESULFOVIBRIO_GROUP 156 seqs
2.28.4.1.1 DHB.RETBAENSE_SUBGROUP 15 seqs
2.28.4.1.1.10012 OTU 1 seq
prokMSA_id:21406 MT63 
2.28.4.1.1.10029 OTU 1 seq
prokMSA_id:35807 low G+C Gram-positive MERTZ_0CM_200 
2.28.4.1.1.10054 OTU 1 seq
prokMSA_id:10405 clone BURTON-48
2.28.4.1.1.10044 OTU 1 seq
prokMSA_id:10402 str. TD3
2.28.4.1.1.10069 OTU 2 seqs
prokMSA_id:75971 delta clone BLIB-74 
prokMSA_id:83169 delta clone ABBB-52 
2.28.4.1.1.10052 OTU 1 seq
prokMSA_id:10404 Desulfonatronovibrio hydrogenovorans str. Z-7935 DSM 9292
2.28.4.1.1.10055 OTU 1 seq
prokMSA_id:10406 clone ACE-39
2.28.4.1.1.10058 OTU 1 seq
prokMSA_id:10407 clone ACE-9
2.28.4.1.1.10042 OTU 1 seq
prokMSA_id:10400 Desulfohalobium retbaense str. HR100 DSM 5692
2.28.4.1.1.10043 OTU 1 seq
prokMSA_id:10401 Desulfohalobium retbaense str. HR100 DSM 5692
2.28.4.1.1.9761 OTU 1 seq
prokMSA_id:19746 clone t045 
2.28.4.1.1.9869 OTU 1 seq
prokMSA_id:22125 SBR1093 
2.28.4.1.1.9894 OTU 1 seq
prokMSA_id:74638 Desulfonauticus submarinus 
2.28.4.1.1.9973 OTU 1 seq
prokMSA_id:70052 clone 49531 
2.28.4.1.2 DFN.LACUSTRE 3 seqs
2.28.4.1.2.10338 OTU 3 seqs
prokMSA_id:10408 Desulfonatronum lacustre str. z-7951. Y14594
prokMSA_id:24344 Desulfonatronum sp. MLF1 AF373920
prokMSA_id:73563 Desulfonatronum lacustre DSM 10312 
2.28.4.1.3 DMB.BACULATUM_SUBGROUP 26 seqs
2.28.4.1.3.10079 OTU 7 seqs
prokMSA_id:10412 clone Aspo1
prokMSA_id:10414 Desulfobacterium macestii str. sulfide spring DSM 4194
prokMSA_id:10415 Desulfomicrobium hypogeium str. CN-A
prokMSA_id:17898 Desulfomicrobium baculatum strain DSM 4028T
prokMSA_id:21280 Desulfomicrobium baculatum strain DSM 1742
prokMSA_id:33526 Desulfomicrobium escambiense strain DSM 10707T
prokMSA_id:64335 Desulfomicrobium sp. 'Delta +' 
2.28.4.1.3.10225 OTU 11 seqs
prokMSA_id:23777 Desulfomicrobium orale strain DSM12838
prokMSA_id:30927 Desulfomicrobium orale strain NY676
prokMSA_id:31560 Desulfomicrobium orale strain NY679
prokMSA_id:69810 delta clone P4-16 
prokMSA_id:69839 Desulfomicrobium orale strain NY683
prokMSA_id:70990 delta clone P1-1 
prokMSA_id:71073 delta clone P4-14 
prokMSA_id:71263 delta clone P4-17 
prokMSA_id:71904 delta clone P4-15 
prokMSA_id:73344 Desulfomicrobium orale strain NY677 AJ251629
prokMSA_id:73693 delta clone P4-13 
2.28.4.1.3.10312 OTU 1 seq
prokMSA_id:30749 clone clB27 
2.28.4.1.3.10314 OTU 1 seq
prokMSA_id:10421 Desulfomicrobium escambiense str. ESC1 ATCC 51164
2.28.4.1.3.10340 OTU 1 seq
prokMSA_id:43622 O11G2 
2.28.4.1.3.10370 OTU 5 seqs
prokMSA_id:10413 Desulfomicrobium sp. str. STL8
prokMSA_id:10418 Desulfomicrobium baculatum str. strain X VKM B-1378
prokMSA_id:10419 Desulfomicrobium apsheronum str. 1105 DSM 5918 . U64865
prokMSA_id:50942 Desulfomicrobium sp. 'Bendigo B' 
prokMSA_id:72167 mle1-31 
2.28.4.1.4 DESULFOVIBRIO_SUBGROUP 112 seqs
2.28.4.1.4.1 DSV.HALOPHILUS_SUBGROUP 19 seqs
2.28.4.1.4.1.10149 OTU 6 seqs
prokMSA_id:10436 Desulfovibrio halophilus DSM 5663
prokMSA_id:10437 Desulfovibrio halophilus DSM 5663
prokMSA_id:10438 Desulfovibrio sp. str. PIB. U33316
prokMSA_id:10439 Desulfovibrio sp. SEBR 6143
prokMSA_id:10440 Desulfovibrio sp. str. Solar Lake. L42995
prokMSA_id:71182 Desulfovibrio sp. L42995
2.28.4.1.4.1.10214 OTU 1 seq
prokMSA_id:30839 Desulfovibrio dechloracetivorans 
2.28.4.1.4.1.10229 OTU 1 seq
prokMSA_id:48166 marine anaerobic 90d4 
2.28.4.1.4.1.10189 OTU 1 seq
prokMSA_id:70595 sp. clone group A7hq
2.28.4.1.4.1.10263 OTU 1 seq
prokMSA_id:80009 Desulfovibrio brasiliensis strain LVform1
2.28.4.1.4.1.10262 OTU 2 seqs
prokMSA_id:54085 Desulfovibrio sp. Ac5.2 
prokMSA_id:87245 Desulfovibrionaceae MSL79 AB110541
2.28.4.1.4.1.10318 OTU 1 seq
prokMSA_id:10429 Desulfovibrio aespoeensis
2.28.4.1.4.1.10356 OTU 2 seqs
prokMSA_id:23150 Desulfovibrio sp. La1.3 
prokMSA_id:32600 Desulfovibrio sp. La1.2 
2.28.4.1.4.1.9711 OTU 2 seqs
prokMSA_id:10427 Desulfovibrio profundus str. 500-1 DSM 11384
prokMSA_id:72826 Desulfovibrio profundus DSM 11384 
2.28.4.1.4.1.9789 OTU 1 seq
prokMSA_id:43170 Desulfovibrio sp. Pr1.2 
2.28.4.1.4.1.9854 OTU 1 seq
prokMSA_id:51052 clone clB80 
2.28.4.1.4.2 DSV.ZOSTERAE_SUBGROUP 5 seqs
2.28.4.1.4.2.10059 OTU 1 seq
prokMSA_id:56227 Desulfovibrio hydrothermalis 
2.28.4.1.4.2.10269 OTU 1 seq
prokMSA_id:46775 delta clone CD4C5 
2.28.4.1.4.2.10327 OTU 1 seq
prokMSA_id:30757 clone CD4B6 
2.28.4.1.4.2.10349 OTU 1 seq
prokMSA_id:10442 Desulfovibrio zosterae str. lac
2.28.4.1.4.2.10354 OTU 1 seq
prokMSA_id:10445 Desulfovibrio bastinii SEBR 4225
2.28.4.1.4.3 DSV.SENEZII_SUBGROUP 2 seqs
2.28.4.1.4.3.9988 OTU 2 seqs
prokMSA_id:10448 Desulfovibrio senezii str. CVL DSM 8436
prokMSA_id:10449 Desulfovibrio sp. str. CVH2
2.28.4.1.4.5 DSV.AMINOPHILUS_SUBGROUP 10 seqs
2.28.4.1.4.5.10022 OTU 1 seq
prokMSA_id:77555 clone R2b32 
2.28.4.1.4.5.10063 OTU 3 seqs
prokMSA_id:10456 Desulfovibrio Mlhm str. Mlhm
prokMSA_id:10458 unnamed organism
prokMSA_id:51153 clone GIF11 
2.28.4.1.4.5.10138 OTU 1 seq
prokMSA_id:19551 Desulfovibrio mexicoense 
2.28.4.1.4.5.10376 OTU 1 seq
prokMSA_id:10454 Desulfovibrio aminophilus str. ALA-3
2.28.4.1.4.5.9713 OTU 2 seqs
prokMSA_id:10455 Desulfovibrio zt31 str. zt3l
prokMSA_id:82207 clone ZZ14C2 
2.28.4.1.4.5.9792 OTU 1 seq
prokMSA_id:44516 clone TDC-006 
2.28.4.1.4.5.9836 OTU 1 seq
prokMSA_id:34507 Toluene-degrading methanogenic consortium Eub 5 
2.28.4.1.4.6 DSV.AFRICANUS_SUBGROUP 17 seqs
2.28.4.1.4.6.10023 OTU 1 seq
prokMSA_id:73426 Desulfovibrio magneticus 
2.28.4.1.4.6.10105 OTU 1 seq
prokMSA_id:32796 clone UASB_brew_B82 
2.28.4.1.4.6.10163 OTU 1 seq
prokMSA_id:18998 clone UASB_brew_B4 
2.28.4.1.4.6.10244 OTU 1 seq
prokMSA_id:66105 delta clone:KB47
2.28.4.1.4.6.10339 OTU 1 seq
prokMSA_id:74366 clone clB03 
2.28.4.1.4.6.9670 OTU 1 seq
prokMSA_id:41341 RFLP109 
2.28.4.1.4.6.9680 OTU 1 seq
prokMSA_id:10461 str. RS-1
2.28.4.1.4.6.9684 OTU 1 seq
prokMSA_id:10463 Desulfovibrio BG6 str. BG6
2.28.4.1.4.6.9683 OTU 1 seq
prokMSA_id:10462 Desulfovibrio burkinensis str. HDv DSM 6830
2.28.4.1.4.6.9689 OTU 1 seq
prokMSA_id:10468 unnamed organism
2.28.4.1.4.6.9690 OTU 1 seq
prokMSA_id:10469 Desulfovibrio inopinatus str. HHQ 20
2.28.4.1.4.6.9714 OTU 1 seq
prokMSA_id:10471 Desulfovibrio zt10e str. zt10e
2.28.4.1.4.6.9717 OTU 1 seq
prokMSA_id:10473 Desulfovibrio sulfodismutans str. ThAcO1
2.28.4.1.4.6.9722 OTU 1 seq
prokMSA_id:10478 Desulfovibrio africanus DSM 2603
2.28.4.1.4.6.9721 OTU 1 seq
prokMSA_id:10474 clone vadinHA40
2.28.4.1.4.6.9987 OTU 2 seqs
prokMSA_id:10470 Desulfovibrio alcoholovorans str. SPSN DSM 5433
prokMSA_id:10475 unnamed organism
2.28.4.1.4.7 DSV.GABONENSIS_SUBGROUP 4 seqs
2.28.4.1.4.7.10248 OTU 1 seq
prokMSA_id:68874 Desulfovibrio giganteus DSM 4370 
2.28.4.1.4.7.10241 OTU 3 seqs
prokMSA_id:10480 Desulfovibrio gabonensis SEBR 2840 . U31080
prokMSA_id:26629 D.indonensis 
prokMSA_id:37664 Desulfovibrio sp. Met 82 
2.28.4.1.4.8 DSV.CUNEATUS_SUBGROUP 3 seqs
2.28.4.1.4.8.10016 OTU 1 seq
prokMSA_id:78137 delta clone:Rs-N35
2.28.4.1.4.8.9753 OTU 1 seq
prokMSA_id:10486 Desulfovibrio cuneatus str. STL1 DSM 11391
2.28.4.1.4.8.9750 OTU 1 seq
prokMSA_id:10485 Desulfovibrio litoralis str. STL6 DSM 11393
2.28.4.1.4.9 LW.INTRACELLULARIS_SUBGROUP 6 seqs
2.28.4.1.4.9.10077 OTU 6 seqs
prokMSA_id:10489 symbiont of intracellular ileal symbiont of Mesocricetus aur
prokMSA_id:10490 Lawsonia intracellularis str. 1482/89 NCTC 12656
prokMSA_id:10491 symbiont of Sus scrofa
prokMSA_id:10496 Desulfovibrio sp. str. MIT 87-599
prokMSA_id:72733 Lawsonia intracellularis 
prokMSA_id:74139 Desulfovibrio sp
2.28.4.1.4.10 DSV.LONGREACHENSIS_SUBGROUP 17 seqs
2.28.4.1.4.10.10019 OTU 2 seqs
prokMSA_id:10506 Desulfovibrio acrylicus str. W218 DSM 10141
prokMSA_id:10508 Desulfovibrio TBP-1 str. TBP-1
2.28.4.1.4.10.10051 OTU 3 seqs
prokMSA_id:10505 Desulfovibrio sp. str. DMB
prokMSA_id:34844 Desulfovibrio sp. 'Bendigo A' 
prokMSA_id:36540 Desulfovibrio vulgaris DSM 644 
2.28.4.1.4.10.10139 OTU 9 seqs
prokMSA_id:10498 Desulfovibrio termitidis. X87409
prokMSA_id:10500 Desulfovibrio sp. str. KH2
prokMSA_id:10502 Desulfovibrio longreachensis str. 16910a
prokMSA_id:26806 Desulfovibrio sp. IrT-JG1-71 
prokMSA_id:27402 Desulfovibrio sp. R2 
prokMSA_id:39982 Desulfovibrio oryzae 
prokMSA_id:46889 Desulfovibrio sp. IrT-JG1-58 
prokMSA_id:71137 Desulfovibrio sp. JG5 
prokMSA_id:71502 Desulfovibrio sp. JG1 AJ295678
2.28.4.1.4.10.10201 OTU 2 seqs
prokMSA_id:10507 Desulfovibrio sp
prokMSA_id:28397 Desulfovibrio alaskensis strain NCIMB 13491 Y11984
2.28.4.1.4.10.9826 OTU 1 seq
prokMSA_id:78002 delta clone:Rs-M72
2.28.4.1.4.11 DSV.DESULFURICANS_SUBGROUP 29 seqs
2.28.4.1.4.11.10009 OTU 1 seq
prokMSA_id:30569 clone p-2918-6C5 
2.28.4.1.4.11.10041 OTU 1 seq
prokMSA_id:23507 clone:BCf11-19
2.28.4.1.4.11.10071 OTU 9 seqs
prokMSA_id:10515 Desulfovibrio desulfuricans subsp. desulfuricans ATCC 27774
prokMSA_id:10516 Desulfovibrio desulfuricans
prokMSA_id:10526 Desulfovibrio sp. str. KRS1
prokMSA_id:22674 clone 9E 
prokMSA_id:45268 Desulfovibrio desulfuricans subsp. desulfuricans strain Esse
prokMSA_id:48934 Desulfovibrio desulfuricans 
prokMSA_id:50393 Desulfovibrio desulfuricans strain 0104 959
prokMSA_id:72418 Desulfovibrio sp. FD1 
prokMSA_id:81316 MTCE-T2 12D 
2.28.4.1.4.11.10075 OTU 3 seqs
prokMSA_id:10512 Desulfovibrio ABHU1SB str. ABHU1SB
prokMSA_id:10513 Desulfovibrio ABHU1SBfatS str. ABHU1SBfatS
prokMSA_id:10514 Desulfovibrio ABHU2SB str. ABHU2SB
2.28.4.1.4.11.10212 OTU 1 seq
prokMSA_id:10510 Desulfovibrio sp. str. KRS2
2.28.4.1.4.11.10192 OTU 1 seq
prokMSA_id:68469 Desulfovibrio sp. A45 
2.28.4.1.4.11.10291 OTU 1 seq
prokMSA_id:26467 ckncm168-F3M.1D4 
2.28.4.1.4.11.10292 OTU 3 seqs
prokMSA_id:10519 Desulfovibrio intestinalis str. KMS2
prokMSA_id:33199 Desulfovibrio desulfuricans subsp. desulfuricans strain MB c
prokMSA_id:93874 Core-3 AB111106
2.28.4.1.4.11.10361 OTU 3 seqs
prokMSA_id:10511 Desulfovibrio fairfieldensis
prokMSA_id:25583 Desulfovibrio sp. D4 complete 
prokMSA_id:49692 Desulfovibrio sp. DSM12803 
2.28.4.1.4.11.9709 OTU 1 seq
prokMSA_id:78153 delta clone:Rs-N31
2.28.4.1.4.11.9745 OTU 1 seq
prokMSA_id:10517 Bilophila wadsworthia str. RZATAU
2.28.4.1.4.11.9747 OTU 1 seq
prokMSA_id:10518 Desulfovibrio UNSW3caefatS str. UNSW3caefatS
2.28.4.1.4.11.9828 OTU 1 seq
prokMSA_id:78006 delta clone:Rs-M89
2.28.4.1.4.11.9980 OTU 2 seqs
prokMSA_id:51535 Desulfomonas pigra complete 
prokMSA_id:52234 clone p-223-o5 
2.28.4.2 BDE.STOLPII_GROUP 54 seqs
2.28.4.2.1 BDE.STOLPII_SUBGROUP 15 seqs
2.28.4.2.1.10010 OTU 1 seq
prokMSA_id:75942 delta clone JG37-AG-139
2.28.4.2.1.10250 OTU 1 seq
prokMSA_id:40173 FukuN9 
2.28.4.2.1.10271 OTU 2 seqs
prokMSA_id:31879 Bdellovibrio sp. JS3 
prokMSA_id:38577 Bdellovibrio sp. JS5 AF084859
2.28.4.2.1.9692 OTU 1 seq
prokMSA_id:33331 delta HOC41 
2.28.4.2.1.9748 OTU 2 seqs
prokMSA_id:49685 Bdellovibrio stolpii strain DSM 12778
prokMSA_id:67145 stolpii AY094131
2.28.4.2.1.9778 OTU 1 seq
prokMSA_id:38634 Bdellovibrio sp. Gunpowder 
2.28.4.2.1.9802 OTU 1 seq
prokMSA_id:10535 clone Sva0447
2.28.4.2.1.9844 OTU 6 seqs
prokMSA_id:19894 Bdellovibrio sp. JS7 AF084862
prokMSA_id:22841 Bdellovibrio sp. JS10 AF084863
prokMSA_id:23141 Bdellovibrio sp. JS4 
prokMSA_id:25914 Bdellovibrio sp. JS2 
prokMSA_id:28791 Bdellovibrio sp. JS6 AF084860
prokMSA_id:38867 Bdellovibrio sp. JS7 AF084861
2.28.4.2.2 ENVIRONMENTAL_CLONE_VADIN_BA07_SUBGROUP 17 seqs
2.28.4.2.2.10203 OTU 1 seq
prokMSA_id:61498 division TM6 clone NOS7.2WL 
2.28.4.2.2.10289 OTU 1 seq
prokMSA_id:32172 SBRH58 
2.28.4.2.2.10372 OTU 2 seqs
prokMSA_id:29910 clone Ebpr8 
prokMSA_id:33441 clone Ebpr6 
2.28.4.2.2.9682 OTU 1 seq
prokMSA_id:61307 division TM6 clone NMW3.210WL 
2.28.4.2.2.9803 OTU 1 seq
prokMSA_id:65674 soil clone S1204 
2.28.4.2.2.9809 OTU 1 seq
prokMSA_id:10537 clone HstpL37
2.28.4.2.2.9816 OTU 1 seq
prokMSA_id:10539 clone ACE-36
2.28.4.2.2.9830 OTU 1 seq
prokMSA_id:10540 clone ACE-15
2.28.4.2.2.9834 OTU 1 seq
prokMSA_id:10543 clone TM6
2.28.4.2.2.9833 OTU 1 seq
prokMSA_id:10541 clone CLEAR-25
2.28.4.2.2.9840 OTU 1 seq
prokMSA_id:10545 clone TM10
2.28.4.2.2.9838 OTU 1 seq
prokMSA_id:10544 clone TM21
2.28.4.2.2.9896 OTU 1 seq
prokMSA_id:33719 MERTZ_2CM_115 
2.28.4.2.2.9914 OTU 3 seqs
prokMSA_id:10536 clone vadinBA07
prokMSA_id:10538 clone SJA-4
prokMSA_id:50582 C1-3 clone C1-3
2.28.4.2.3 ENVIRONMENTAL_CLONE_WCHA2-26_SUBGROUP 3 seqs
2.28.4.2.3.10234 OTU 1 seq
prokMSA_id:10549 clone WCHA2-26
2.28.4.2.3.9841 OTU 1 seq
prokMSA_id:10546 Pacific Ocean station 16 100m depth clone
2.28.4.2.3.9843 OTU 1 seq
prokMSA_id:10548 clone pN1-3
2.28.4.2.4 ENVIRONMENTAL_CLONE_OPS136_SUBGROUP 2 seqs
2.28.4.2.4.9860 OTU 1 seq
prokMSA_id:10550 clone WCHA1-16
2.28.4.2.4.9862 OTU 1 seq
prokMSA_id:10552 clone OPS136
2.28.4.2.5 ENVIRONMENTAL_CLONE_WCHB1-56_SUBGROUP 9 seqs
2.28.4.2.5.10113 OTU 1 seq
prokMSA_id:30636 clone PRD01a009B 
2.28.4.2.5.10169 OTU 1 seq
prokMSA_id:10556 clone WCHA1-09
2.28.4.2.5.10160 OTU 1 seq
prokMSA_id:10555 clone WCHB1-11
2.28.4.2.5.10170 OTU 1 seq
prokMSA_id:10558 clone WCHB1-56
2.28.4.2.5.10295 OTU 2 seqs
prokMSA_id:79637 candidate division OP11 clone WSA68 
prokMSA_id:79984 candidate division OP11 clone WSA1 
2.28.4.2.5.9881 OTU 1 seq
prokMSA_id:10553 clone LGd17
2.28.4.2.5.9883 OTU 1 seq
prokMSA_id:10554 clone LGd14
2.28.4.2.5.9888 OTU 1 seq
prokMSA_id:10559 clone P36b
2.28.4.2.6 ENVIRONMENTAL_CLONE_WCHB1-07_SUBGROUP 7 seqs
2.28.4.2.6.10125 OTU 1 seq
prokMSA_id:18743 Toluene-degrading methanogenic consortium Eub 2 
2.28.4.2.6.10188 OTU 1 seq
prokMSA_id:10567 clone WCHB1-26
2.28.4.2.6.10246 OTU 1 seq
prokMSA_id:82149 clone KD2-5 
2.28.4.2.6.10281 OTU 1 seq
prokMSA_id:41471 clone RFLP 8E 
2.28.4.2.6.9927 OTU 1 seq
prokMSA_id:10560 clone WCHB1-64
2.28.4.2.6.9933 OTU 1 seq
prokMSA_id:10564 clone WCHA1-20
2.28.4.2.6.9934 OTU 1 seq
prokMSA_id:10565 clone WCHA1-24
2.28.4.2.7 ENVIRONMENTAL_CLONE_WCHA1-11_SUBGROUP 1 seq
2.28.4.2.7.10156 OTU 1 seq
prokMSA_id:10568 clone WCHA1-11
2.28.4.3 DSR.ACETIVORANS_GROUP 8 seqs
2.28.4.3.10144 OTU 1 seq
prokMSA_id:51780 Hippea maritima 
2.28.4.3.10317 OTU 5 seqs
prokMSA_id:10570 Desulfurella acetivorans DSM 5264
prokMSA_id:10571 Desulfurella multipotens str. RH-8 DSM 8415 . Y16943
prokMSA_id:10572 Desulfurella propionica str. U-8 DSM 10410 . Y16942
prokMSA_id:10573 Desulfurella kamchatkensis str. K-119 DSM 10409 . Y16941
prokMSA_id:47020 delta MS10 
2.28.4.3.9855 OTU 1 seq
prokMSA_id:45576 clone B45 
2.28.4.3.9990 OTU 1 seq
prokMSA_id:33655 Desulfurella sp. clone 
2.28.4.6 MYXOBACTERIA 120 seqs
2.28.4.6.1 MYX.XANTHUS_SUBGROUP 76 seqs
2.28.4.6.1.10066 OTU 18 seqs
prokMSA_id:10594 Myxococcus xanthus str. DK1622
prokMSA_id:10600 Cystobacter disciformis str. An d1
prokMSA_id:10601 Myxococcus flavescens str. Mx fl1
prokMSA_id:10603 Myxococcus fulvus str. Mx f421
prokMSA_id:10604 Myxococcus fulvus str. Mx f428
prokMSA_id:10605 Myxococcus macrosporus str. Cc m7
prokMSA_id:10606 Myxococcus macrosporus str. Cc m8
prokMSA_id:10610 Myxococcus virescens str. Mx v2
prokMSA_id:10611 Myxococcus virescens str. Mx v76
prokMSA_id:10612 Myxococcus virescens str. Mx v1
prokMSA_id:10613 Myxococcus virescens str. Mx v144
prokMSA_id:10614 Myxococcus xanthus str. Mx x1 DSM 435
prokMSA_id:10615 Myxococcus xanthus str. Mx x132
prokMSA_id:20918 Myxococcus fulvus 128-7 complete 
prokMSA_id:21317 Myxococcus macrosporus strain 125-10-1 complete 
prokMSA_id:34703 Myxococcus fulvus strain 125-1 complete 
prokMSA_id:47762 Myxococcus fulvus 
prokMSA_id:66414 Myxococcus xanthus 
2.28.4.6.1.10080 OTU 5 seqs
prokMSA_id:10581 Stigmatella erecta str. Pd e3
prokMSA_id:10582 Stigmatella aurantiaca str. Sg a1
prokMSA_id:10583 Stigmatella aurantiaca str. Sg a15
prokMSA_id:10584 Stigmatella aurantiaca str. Sg a28
prokMSA_id:10585 Stigmatella erecta str. Pd e19
2.28.4.6.1.10092 OTU 1 seq
prokMSA_id:65455 clone a13134 
2.28.4.6.1.10088 OTU 16 seqs
prokMSA_id:24157 Anaeromyxobacter dehalogenans strain 2CP-5 
prokMSA_id:27824 Anaeromyxobacter dehalogenans strain 2CP-2 
prokMSA_id:31177 Anaeromyxobacter dehalogenans strain 2CP-3 
prokMSA_id:45051 Anaeromyxobacter dehalogenans strain 2CP-C 
prokMSA_id:47993 Anaeromyxobacter dehalogenans strain 2CP-1 
prokMSA_id:63253 clone FW35 
prokMSA_id:66954 Myxobacterium KC 
prokMSA_id:82538 cf. Anaeromyxobacter sp. clone 90D-25
prokMSA_id:82595 cf. Anaeromyxobacter sp. clone 45D-51
prokMSA_id:83142 cf. Anaeromyxobacter sp. clone 45D-27
prokMSA_id:83217 cf. Anaeromyxobacter sp. clone 90D-12
prokMSA_id:83775 cf. Anaeromyxobacter sp. clone 90D-18
prokMSA_id:83783 cf. Anaeromyxobacter sp. clone 90D-47
prokMSA_id:85245 cf. Anaeromyxobacter sp. clone 45D-26
prokMSA_id:85991 cf. Anaeromyxobacter sp. clone 45D-76
prokMSA_id:86437 cf. Anaeromyxobacter sp. clone 90D-55
2.28.4.6.1.10186 OTU 1 seq
prokMSA_id:10580 Stigmatella aurantiaca ATCC 25190
2.28.4.6.1.10230 OTU 1 seq
prokMSA_id:10596 clone SJA-5
2.28.4.6.1.10231 OTU 1 seq
prokMSA_id:10597 clone OPS152
2.28.4.6.1.10259 OTU 1 seq
prokMSA_id:66526 clone cvf63054 
2.28.4.6.1.10232 OTU 1 seq
prokMSA_id:10599 clone P45
2.28.4.6.1.10313 OTU 1 seq
prokMSA_id:21534 clone P3OB-42 
2.28.4.6.1.10358 OTU 29 seqs
prokMSA_id:10586 str. NOCB-2
prokMSA_id:10587 str. NOCB-4
prokMSA_id:10589 Corallococcus exiguus str. Cc e12b
prokMSA_id:10590 Corallococcus exiguus str. Cc e100
prokMSA_id:10591 Myxococcus coralloides str. Cc c494
prokMSA_id:10592 Myxococcus coralloides str. Cc c806
prokMSA_id:10602 Myxococcus fulvus str. Mx f2
prokMSA_id:10607 Myxococcus stipitatus str. Mx s33
prokMSA_id:10608 Myxococcus stipitatus str. Mx s42
prokMSA_id:10609 Myxococcus stipitatus str. Mx s52
prokMSA_id:10617 Cystobacter fuscus str. Cb f6
prokMSA_id:10618 Cystobacter fuscus str. Cb f10
prokMSA_id:10619 Cystobacter fuscus str. Cb f39
prokMSA_id:10620 Cystobacter ferrugineus str. Cb fe18
prokMSA_id:10621 Cystobacter ferrugineus str. Cb fe27
prokMSA_id:10622 Melittangium alboraceum str. Me b7
prokMSA_id:10623 Melittangium boletus str. Me b8
prokMSA_id:10625 Archangium gephyra ATCC 25201 . M94273
prokMSA_id:10626 Cystobacter disciformis str. An d4
prokMSA_id:10627 Cystobacter disciformis str. An d6
prokMSA_id:10628 Archangium gephyra str. Ar g1
prokMSA_id:10629 Archangium gephyra str. Ar g2
prokMSA_id:10630 Cystobacter ferrugineus str. Cb fe13
prokMSA_id:10631 Cystobacter minus str. Cb m2
prokMSA_id:10632 Cystobacter minus str. Cb m6. AJ233904
prokMSA_id:10633 Cystobacter violaceus str. Cb vi29
prokMSA_id:10634 Cystobacter violaceus str. Cb vi34. AJ233906
prokMSA_id:66412 Myxococcus stipitatus 
prokMSA_id:66415 Cystobacter sp. BD54 
2.28.4.6.1.9936 OTU 1 seq
prokMSA_id:82334 clone KD3-10 
2.28.4.6.3 POL.CELLULOSUM_SUBGROUP 44 seqs
2.28.4.6.3.10074 OTU 2 seqs
prokMSA_id:38791 delta 
prokMSA_id:66013 delta 
2.28.4.6.3.10065 OTU 11 seqs
prokMSA_id:17113 Polyangium cellulosum complete 
prokMSA_id:22473 Polyangium cellulosum strain So9857 complete 
prokMSA_id:29731 Polyangium cellulosum strain So0089-1 complete 
prokMSA_id:39056 Polyangium cellulosum strain 87-5 complete 
prokMSA_id:41480 Polyangium cellulosum strain So9882-1 complete 
prokMSA_id:45207 Polyangium cellulosum So9721-1 complete 
prokMSA_id:46866 Polyangium cellulosum strain So9881 complete 
prokMSA_id:47189 Polyangium cellulosum strain So9735-22 complete 
prokMSA_id:72161 Polyangium cellulosum strain So ce90
prokMSA_id:82906 Polyangium cellulosum strain So02007-3 complete 
prokMSA_id:86196 Polyangium cellulosum strain So9734 complete 
2.28.4.6.3.10122 OTU 1 seq
prokMSA_id:10654 str. SMP-2
2.28.4.6.3.10101 OTU 1 seq
prokMSA_id:10646 Pele's Vents clone PVB_46
2.28.4.6.3.10120 OTU 1 seq
prokMSA_id:10652 Polyangium vitellinum str. Pl vt1
2.28.4.6.3.10104 OTU 1 seq
prokMSA_id:26373 Polyangium cellulosum strain 9741 complete 
2.28.4.6.3.10099 OTU 1 seq
prokMSA_id:10645 Polyangium thaxteri str. Pl t3
2.28.4.6.3.10096 OTU 1 seq
prokMSA_id:10641 Chondromyces pediculatus str. Cm p17
2.28.4.6.3.10124 OTU 1 seq
prokMSA_id:10657 str. NOSO-1
2.28.4.6.3.10119 OTU 1 seq
prokMSA_id:10650 Nannocystis exedens str. Na e1
2.28.4.6.3.10193 OTU 2 seqs
prokMSA_id:26165 delta MERTZ_21CM_284 AF424255
prokMSA_id:78239 delta clone Hyd24-27
2.28.4.6.3.10247 OTU 1 seq
prokMSA_id:79211 clone csbio160363 
2.28.4.6.3.10249 OTU 1 seq
prokMSA_id:75311 delta clone JG36-TzT-168
2.28.4.6.3.10286 OTU 1 seq
prokMSA_id:37962 Rhizosphere soil clone RSC-II-106 
2.28.4.6.3.10298 OTU 1 seq
prokMSA_id:79653 clone BTM36 
2.28.4.6.3.10309 OTU 2 seqs
prokMSA_id:10649 Nannocystis aggregans str. Na a1
prokMSA_id:10651 Nannocystis exedens str. Na e571. AJ233947
2.28.4.6.3.10353 OTU 1 seq
prokMSA_id:30991 sludge A9 
2.28.4.6.3.10345 OTU 1 seq
prokMSA_id:72214 delta isolate Eel-36e1D6 
2.28.4.6.3.9671 OTU 1 seq
prokMSA_id:67784 isolate C1_B003 
2.28.4.6.3.9716 OTU 2 seqs
prokMSA_id:84947 Thaxtera salina strain:SMK-1-3
prokMSA_id:85080 Thaxtera salina strain:SHK-1
2.28.4.6.3.9725 OTU 1 seq
prokMSA_id:48487 delta clone BIrii41
2.28.4.6.3.9735 OTU 1 seq
prokMSA_id:77008 delta clone JG37-AG-15
2.28.4.6.3.9755 OTU 1 seq
prokMSA_id:79558 clone ZA3704c 
2.28.4.6.3.9808 OTU 1 seq
prokMSA_id:69926 clone TAF-A127 
2.28.4.6.3.9820 OTU 1 seq
prokMSA_id:79593 clone csbio160144 
2.28.4.6.3.9861 OTU 1 seq
prokMSA_id:71817 mle1-29 
2.28.4.6.3.9874 OTU 1 seq
prokMSA_id:76214 delta clone JG34-KF-243
2.28.4.6.3.9900 OTU 1 seq
prokMSA_id:45556 mle1-27 
2.28.4.6.3.9912 OTU 1 seq
prokMSA_id:75552 delta clone JG34-KF-14
2.28.4.6.3.9970 OTU 1 seq
prokMSA_id:70239 Polyangium cellulosum strain NUST_6 
2.28.4.7 DESULFUROMONAS_GROUP 170 seqs
2.28.4.7.1 PEB.ACETYLENICUS_SUBGROUP 93 seqs
2.28.4.7.1.10026 OTU 1 seq
prokMSA_id:79310 Desulfuromonas sp. clone AKS67 
2.28.4.7.1.10015 OTU 1 seq
prokMSA_id:54232 delta MERTZ_0CM_59 
2.28.4.7.1.10027 OTU 1 seq
prokMSA_id:79161 Cytophaga sp. Dex80-43 strain Dex80-43
2.28.4.7.1.10018 OTU 1 seq
prokMSA_id:52634 delta MERTZ_2CM_249 
2.28.4.7.1.10049 OTU 1 seq
prokMSA_id:66925 clone SHA-72
2.28.4.7.1.10082 OTU 1 seq
prokMSA_id:76933 delta clone JG37-AG-33
2.28.4.7.1.10081 OTU 2 seqs
prokMSA_id:41059 Desulfuromonas michiganensis strain BB1 
prokMSA_id:51450 Desulfuromonas michiganensis strain BRS1 
2.28.4.7.1.10040 OTU 1 seq
prokMSA_id:17883 clone d038R 
2.28.4.7.1.10048 OTU 1 seq
prokMSA_id:16746 Rhizosphere soil clone RSC-II-6 
2.28.4.7.1.10095 OTU 1 seq
prokMSA_id:78716 Desulfuromonas sp. clone LH2_14 
2.28.4.7.1.10127 OTU 1 seq
prokMSA_id:10659 clone ACE-44
2.28.4.7.1.10126 OTU 1 seq
prokMSA_id:10658 Malonomonas rubra str. GraMal1 DSM 5091
2.28.4.7.1.10093 OTU 1 seq
prokMSA_id:17185 delta MERTZ_2CM_61 
2.28.4.7.1.10131 OTU 4 seqs
prokMSA_id:10660 Desulfuromusa bakii str. Gyprop DSM 7345
prokMSA_id:10692 Desulfuromusa succinoxidans str. Gylac DSM 8270
prokMSA_id:10695 Desulfuromusa kysingii str. Kysw2 DSM 7343
prokMSA_id:18366 delta clone d1 
2.28.4.7.1.10147 OTU 1 seq
prokMSA_id:10661 clone Sva0853
2.28.4.7.1.10161 OTU 1 seq
prokMSA_id:10662 Desulfuromonas palmitatis str. SDBY1 ATCC 51701
2.28.4.7.1.10167 OTU 1 seq
prokMSA_id:72297 delta MERTZ_0CM_142 
2.28.4.7.1.10145 OTU 1 seq
prokMSA_id:35746 delta MERTZ_2CM_117 
2.28.4.7.1.10206 OTU 1 seq
prokMSA_id:10673 clone OPS22
2.28.4.7.1.10211 OTU 1 seq
prokMSA_id:10676 clone CLEAR-19
2.28.4.7.1.10227 OTU 1 seq
prokMSA_id:80396 clone Bol11 
2.28.4.7.1.10198 OTU 1 seq
prokMSA_id:10671 clone PENDANT-34
2.28.4.7.1.10218 OTU 1 seq
prokMSA_id:39191 delta MERTZ_21CM_402 
2.28.4.7.1.10213 OTU 1 seq
prokMSA_id:10678 clone BPC076
2.28.4.7.1.10254 OTU 1 seq
prokMSA_id:75874 clone Sh765B-TzT-35
2.28.4.7.1.10255 OTU 1 seq
prokMSA_id:44979 SY6-56 
2.28.4.7.1.10324 OTU 2 seqs
prokMSA_id:10683 Pelobacter carbinolicus str. GraBd1 DSM 2380
prokMSA_id:10685 Pelobacter carbinolicus str. GraBd1 DSM 2380
2.28.4.7.1.10283 OTU 1 seq
prokMSA_id:72950 delta isolate SB-24e1E8 
2.28.4.7.1.10330 OTU 1 seq
prokMSA_id:62663 Verrucomicrobia clone ML635J-58 
2.28.4.7.1.10346 OTU 1 seq
prokMSA_id:46410 delta TIHP368-09 
2.28.4.7.1.10336 OTU 1 seq
prokMSA_id:47900 clone Car7ra 
2.28.4.7.1.10380 OTU 1 seq
prokMSA_id:10681 clone Sva0485
2.28.4.7.1.9662 OTU 5 seqs
prokMSA_id:60573 clone B83 
prokMSA_id:83585 planctomycete clone CY0ARA032E06 of environmental sample of 
prokMSA_id:83983 planctomycete clone CY0ARA025H04 of environmental sample of 
prokMSA_id:84726 planctomycete clone CY0ARA025G12 of environmental sample of 
prokMSA_id:85518 planctomycete clone CY0ARA031D04 of environmental sample of 
2.28.4.7.1.9666 OTU 2 seqs
prokMSA_id:66635 delta clone 8-42 
prokMSA_id:78077 delta clone Hyd89-13
2.28.4.7.1.9672 OTU 1 seq
prokMSA_id:24509 Entotheonella palauensis 
2.28.4.7.1.9676 OTU 1 seq
prokMSA_id:76001 delta clone JG37-AG-140
2.28.4.7.1.9686 OTU 1 seq
prokMSA_id:20650 planctomycete MERTZ_21CM_213 
2.28.4.7.1.9694 OTU 1 seq
prokMSA_id:79353 clone ZA2615c 
2.28.4.7.1.9704 OTU 1 seq
prokMSA_id:79502 Cytophaga sp. Dex80-64 strain Dex80-64
2.28.4.7.1.9726 OTU 1 seq
prokMSA_id:48488 planctomycete MERTZ_21CM_160 
2.28.4.7.1.9728 OTU 10 seqs
prokMSA_id:10663 clone Sva1034
prokMSA_id:10664 clone Sva1033
prokMSA_id:10665 clone Sva0566
prokMSA_id:10666 clone Sva0556
prokMSA_id:28844 delta clone 296 AF369728
prokMSA_id:48291 Pelobacter sp. clone A3b3
prokMSA_id:78867 Desulfuromonas sp. clone SB2_81 
prokMSA_id:78882 Desulfuromonas sp. clone SB2_94 
prokMSA_id:80275 clone Bol29 
prokMSA_id:93664 clone P8-GEN-10 AY361922
2.28.4.7.1.9760 OTU 1 seq
prokMSA_id:63116 clone MB-A2-137 
2.28.4.7.1.9759 OTU 1 seq
prokMSA_id:10680 str. JTB38
2.28.4.7.1.9768 OTU 1 seq
prokMSA_id:16373 delta CE49 
2.28.4.7.1.9767 OTU 1 seq
prokMSA_id:10682 clone Sva0679
2.28.4.7.1.9772 OTU 2 seqs
prokMSA_id:30059 Arctic95B-14 AF355055
prokMSA_id:33009 Verrucomicrobia Arctic95B-10 
2.28.4.7.1.9770 OTU 1 seq
prokMSA_id:19507 delta MERTZ_2CM_75 
2.28.4.7.1.9779 OTU 1 seq
prokMSA_id:10684 Desulfuromonas acetexigens DSM 1397
2.28.4.7.1.9787 OTU 1 seq
prokMSA_id:10687 clone HstpL86
2.28.4.7.1.9783 OTU 1 seq
prokMSA_id:10686 Pelobacter acidigallici str. MaGa12 DSM 2377
2.28.4.7.1.9784 OTU 1 seq
prokMSA_id:78912 Desulfuromonadales 
2.28.4.7.1.9790 OTU 2 seqs
prokMSA_id:50443 clone 33-PA95B98 AF469370
prokMSA_id:74843 delta clone P. palm C/A 79
2.28.4.7.1.9795 OTU 1 seq
prokMSA_id:10689 str. BD2-3
2.28.4.7.1.9798 OTU 1 seq
prokMSA_id:76094 delta clone GuBH2-AD/TzT-67
2.28.4.7.1.9805 OTU 1 seq
prokMSA_id:21898 delta MERTZ_0CM_327 
2.28.4.7.1.9825 OTU 1 seq
prokMSA_id:10691 str. JTB36
2.28.4.7.1.9823 OTU 1 seq
prokMSA_id:10690 str. BD3-7
2.28.4.7.1.9853 OTU 1 seq
prokMSA_id:16727 delta MERTZ_2CM_36 
2.28.4.7.1.9864 OTU 1 seq
prokMSA_id:75261 delta clone JG37-AG-133
2.28.4.7.1.9876 OTU 1 seq
prokMSA_id:63111 clone MB-B2-106 
2.28.4.7.1.9884 OTU 1 seq
prokMSA_id:63329 clone RCP2-62 
2.28.4.7.1.9937 OTU 1 seq
prokMSA_id:29670 delta isolate SB-24e1D6 
2.28.4.7.1.9960 OTU 1 seq
prokMSA_id:43402 clone Car102rb 
2.28.4.7.1.9968 OTU 1 seq
prokMSA_id:77161 delta ML1218M-7 
2.28.4.7.1.9979 OTU 1 seq
prokMSA_id:72784 isolate C1_B041 
2.28.4.7.1.9983 OTU 4 seqs
prokMSA_id:25416 delta MERTZ_21CM_326 
prokMSA_id:37225 delta MERTZ_21CM_313 AF424258
prokMSA_id:71000 delta isolate Eel-TE1A4 
prokMSA_id:73726 delta isolate Eel-TE1A11 AF354153
2.28.4.7.1.9993 OTU 3 seqs
prokMSA_id:31035 Rhizosphere soil clone RSC-II-54 AJ252685
prokMSA_id:35486 Agricultural soil clone SC-I-29 
prokMSA_id:75356 alpha clone GR10 
2.28.4.7.2 DSM.ACETOXIDANS_SUBGROUP 12 seqs
2.28.4.7.2.10020 OTU 1 seq
prokMSA_id:76391 delta clone GuBH2-AG-114
2.28.4.7.2.10129 OTU 1 seq
prokMSA_id:23042 RFLP105 
2.28.4.7.2.10084 OTU 2 seqs
prokMSA_id:56683 clone AS6 
prokMSA_id:58310 clone BA9 
2.28.4.7.2.10146 OTU 1 seq
prokMSA_id:25981 delta MERTZ_0CM_103 
2.28.4.7.2.10185 OTU 1 seq
prokMSA_id:10704 clone Sva0590
2.28.4.7.2.10307 OTU 1 seq
prokMSA_id:35822 delta clone d13 
2.28.4.7.2.9812 OTU 1 seq
prokMSA_id:24543 Green Bay ferromanganous micronodule MND4 
2.28.4.7.2.9835 OTU 1 seq
prokMSA_id:10699 Desulfuromonas thiophila str. NZ27 DSMZ 8987
2.28.4.7.2.9908 OTU 1 seq
prokMSA_id:10700 clone vadinHA49
2.28.4.7.2.9924 OTU 1 seq
prokMSA_id:10703 str. 32.a
2.28.4.7.2.9921 OTU 1 seq
prokMSA_id:10701 str. 09.96.18
2.28.4.7.4 GBC.METALLIREDUCENS_SUBGROUP 65 seqs
2.28.4.7.4.10008 OTU 1 seq
prokMSA_id:20001 TA11 
2.28.4.7.4.10021 OTU 1 seq
prokMSA_id:75593 delta clone Sh765B-TzT-29
2.28.4.7.4.10013 OTU 1 seq
prokMSA_id:67796 isolate a2b027 
2.28.4.7.4.10076 OTU 1 seq
prokMSA_id:60598 clone G13 
2.28.4.7.4.10053 OTU 2 seqs
prokMSA_id:16622 Nitrospira group MERTZ_2CM_68 
prokMSA_id:30263 MERTZ_0CM_292 
2.28.4.7.4.10180 OTU 1 seq
prokMSA_id:48147 sludge H16 
2.28.4.7.4.10179 OTU 1 seq
prokMSA_id:10719 clone SJA-111
2.28.4.7.4.10165 OTU 1 seq
prokMSA_id:10710 clone CLEAR-32
2.28.4.7.4.10176 OTU 1 seq
prokMSA_id:10717 clone RB28
2.28.4.7.4.10177 OTU 1 seq
prokMSA_id:10718 clone SJA-51
2.28.4.7.4.10174 OTU 1 seq
prokMSA_id:10715 clone RB17
2.28.4.7.4.10171 OTU 1 seq
prokMSA_id:62404 delta clone FTLM111 
2.28.4.7.4.10166 OTU 1 seq
prokMSA_id:10714 Pelobacter propionicus str. OttBd1 DSM 2379
2.28.4.7.4.10219 OTU 1 seq
prokMSA_id:38392 WCHB1-27 
2.28.4.7.4.10197 OTU 1 seq
prokMSA_id:10720 clone SJA-152
2.28.4.7.4.10207 OTU 2 seqs
prokMSA_id:10725 Geobacter sp. str. Ala-5. AF019928
prokMSA_id:10726 Geobacter sp. str. Ala-6
2.28.4.7.4.10216 OTU 1 seq
prokMSA_id:10729 Geobacter akaganeitreducens str. Dfr2
2.28.4.7.4.10209 OTU 1 seq
prokMSA_id:10728 Geobacter arculus str. Dfr1
2.28.4.7.4.10205 OTU 1 seq
prokMSA_id:10724 clone GCA047
2.28.4.7.4.10210 OTU 1 seq
prokMSA_id:29359 delta MERTZ_0CM_49 
2.28.4.7.4.10224 OTU 1 seq
prokMSA_id:10733 Geobacter sp. str. CdA-2
2.28.4.7.4.10190 OTU 1 seq
prokMSA_id:26084 clone TDC-029 
2.28.4.7.4.10204 OTU 1 seq
prokMSA_id:10722 clone CLEAR-9
2.28.4.7.4.10182 OTU 1 seq
prokMSA_id:47124 TA13 
2.28.4.7.4.10272 OTU 1 seq
prokMSA_id:22312 TA15 
2.28.4.7.4.10321 OTU 1 seq
prokMSA_id:41174 delta clone:TYM--13 
2.28.4.7.4.10326 OTU 1 seq
prokMSA_id:74740 FukuN110 
2.28.4.7.4.10288 OTU 4 seqs
prokMSA_id:10709 Geobacter metallireducens str. GS-15 ATCC 53774
prokMSA_id:22464 Geobacter grbicium strain TACP-2 complete AF335182
prokMSA_id:29370 Geobacter grbicium strain TACP-5 complete AF335183
prokMSA_id:95149 Geobacter metallireducens Gmet_14 whole genome shotgun NZ_AA
2.28.4.7.4.10287 OTU 1 seq
prokMSA_id:29943 clone KS47 
2.28.4.7.4.10335 OTU 1 seq
prokMSA_id:71269 TA16 
2.28.4.7.4.9663 OTU 4 seqs
prokMSA_id:74078 delta isolate Eel-TE1B1 
prokMSA_id:77835 delta clone Hyd89-19 AJ535233
prokMSA_id:77896 delta clone Hyd89-52
prokMSA_id:78341 delta clone Hyd89-66
2.28.4.7.4.9701 OTU 1 seq
prokMSA_id:32027 Trichlorobacter thiogenes 
2.28.4.7.4.9723 OTU 1 seq
prokMSA_id:34143 SHA-207 
2.28.4.7.4.9731 OTU 1 seq
prokMSA_id:76056 delta clone JG37-AG-90
2.28.4.7.4.9733 OTU 1 seq
prokMSA_id:79548 clone ZA3735c 
2.28.4.7.4.9749 OTU 1 seq
prokMSA_id:28314 delta MERTZ_2CM_331 
2.28.4.7.4.9751 OTU 1 seq
prokMSA_id:61837 delta clone CLi130 
2.28.4.7.4.9758 OTU 1 seq
prokMSA_id:18006 Metal-contaminated soil clone K20-79 
2.28.4.7.4.9782 OTU 1 seq
prokMSA_id:79712 candidate division OP10 clone S1a-1H 
2.28.4.7.4.9786 OTU 1 seq
prokMSA_id:16378 delta MERTZ_2CM_70 
2.28.4.7.4.9791 OTU 1 seq
prokMSA_id:37152 Banisveld landfill BVB45 
2.28.4.7.4.9806 OTU 1 seq
prokMSA_id:19377 delta MERTZ_2CM_138 
2.28.4.7.4.9819 OTU 1 seq
prokMSA_id:29387 TA14 
2.28.4.7.4.9827 OTU 1 seq
prokMSA_id:48265 Metal-contaminated soil clone K20-06 
2.28.4.7.4.9845 OTU 1 seq
prokMSA_id:75884 delta clone JG37-AG-128
2.28.4.7.4.9850 OTU 2 seqs
prokMSA_id:10735 Geobacter sulfurreducens str. PCA ATCC 51573
prokMSA_id:34292 clone d006 
2.28.4.7.4.9858 OTU 1 seq
prokMSA_id:49070 #0319-6G20 
2.28.4.7.4.9859 OTU 1 seq
prokMSA_id:16437 delta MERTZ_0CM_225 
2.28.4.7.4.9875 OTU 1 seq
prokMSA_id:71753 isolate CS_B022 
2.28.4.7.4.9898 OTU 1 seq
prokMSA_id:62391 delta clone FTLM68 
2.28.4.7.4.9910 OTU 1 seq
prokMSA_id:30882 delta MERTZ_2CM_306 
2.28.4.7.4.9911 OTU 1 seq
prokMSA_id:20323 delta MERTZ_21CM_270 
2.28.4.7.4.9932 OTU 1 seq
prokMSA_id:10708 Geobacter sp. str. CdA-3
2.28.4.7.4.9956 OTU 1 seq
prokMSA_id:63255 clone FW140 
2.28.4.7.4.9959 OTU 1 seq
prokMSA_id:63259 clone FW110 
2.28.4.7.4.9985 OTU 1 seq
prokMSA_id:48355 Banisveld landfill BVA59 
2.28.4.8 BDE.BACTERIOVORUS_GROUP 23 seqs
2.28.4.8.10036 OTU 18 seqs
prokMSA_id:24625 Bdellovibrio strain HD 127 DSM 50708 AJ292760
prokMSA_id:38436 Bdellovibrio strain SRE7 
prokMSA_id:39664 Bdellovibrio strain DSM 50705
prokMSA_id:40800 Bdellovibrio strain HD 100 DSM 50701 AJ292759
prokMSA_id:40880 Bdellovibrio strain 100 AF084850
prokMSA_id:44877 Bdellovibrio strain E AF084851
prokMSA_id:67144 Bdellovibrio AY094129
prokMSA_id:67148 Bdellovibrio AY094127
prokMSA_id:67149 Bdellovibrio AY094126
prokMSA_id:67150 Bdellovibrio sp. Vietnam AY094123
prokMSA_id:67151 Bdellovibrio sp. P AY094121
prokMSA_id:67152 Bdellovibrio AY094125
prokMSA_id:67153 Bdellovibrio sp. Tu-113 AY094122
prokMSA_id:67155 Bdellovibrio AY094124
prokMSA_id:67162 Bdellovibrio sp. Hefner AY094114
prokMSA_id:67164 Bdellovibrio sp. ARL-12 AY094109
prokMSA_id:67170 Bdellovibrio sp. albina1 AY094107
prokMSA_id:67176 Bdellovibrio sp. 6-5-S AY094106
2.28.4.8.9718 OTU 1 seq
prokMSA_id:16939 Bdellovibrio strain SRA9 
2.28.4.8.9851 OTU 1 seq
prokMSA_id:38566 Bdellovibrio sp. W strain ATCC 27047
2.28.4.8.9863 OTU 1 seq
prokMSA_id:74869 Bdellovibrio strain TRA2 
2.28.4.8.9996 OTU 2 seqs
prokMSA_id:30112 Bdellovibrio strain BRP4 
prokMSA_id:49295 Bdellovibrio strain BEP2 
2.28.4.10 DESULFOBULBUS_ASSEMBLAGE 63 seqs
2.28.4.10.10030 OTU 1 seq
prokMSA_id:36463 UASB_TL11 complete 
2.28.4.10.10024 OTU 1 seq
prokMSA_id:67799 isolate a2b025 
2.28.4.10.10003 OTU 1 seq
prokMSA_id:73225 Desulfacinum sp. M40/2 CIV-2.3 
2.28.4.10.10100 OTU 1 seq
prokMSA_id:33960 sulphate reducing DSB-DSa99-7 
2.28.4.10.10110 OTU 1 seq
prokMSA_id:41991 clone clB74 
2.28.4.10.10112 OTU 2 seqs
prokMSA_id:55923 clone NOS7.157WL 
prokMSA_id:82212 clone KD8-84 
2.28.4.10.10111 OTU 1 seq
prokMSA_id:74022 a2b033 
2.28.4.10.10208 OTU 1 seq
prokMSA_id:28552 Desulfacinum subterraneum 
2.28.4.10.10221 OTU 1 seq
prokMSA_id:77318 clone R3p4 
2.28.4.10.10215 OTU 1 seq
prokMSA_id:31004 Btol 
2.28.4.10.10184 OTU 1 seq
prokMSA_id:77292 clone R1p32 
2.28.4.10.10240 OTU 1 seq
prokMSA_id:25647 a2b002 
2.28.4.10.10243 OTU 1 seq
prokMSA_id:42281 Nitrospira sp. clone 4-29 
2.28.4.10.10251 OTU 2 seqs
prokMSA_id:10760 str. PRTOL1
prokMSA_id:10761 unnamed organism
2.28.4.10.10274 OTU 1 seq
prokMSA_id:10750 Syntrophobacter wolinii
2.28.4.10.10277 OTU 1 seq
prokMSA_id:10752 Syntrophobacter fumaroxidans str. MPOB DSM 10017
2.28.4.10.10278 OTU 1 seq
prokMSA_id:10753 clone SJA-172
2.28.4.10.10302 OTU 1 seq
prokMSA_id:38917 a1b020 
2.28.4.10.10294 OTU 1 seq
prokMSA_id:70282 Desulfacinum hydrothermale 
2.28.4.10.10282 OTU 1 seq
prokMSA_id:41839 Sulfate-reducing strain STP34 
2.28.4.10.10285 OTU 2 seqs
prokMSA_id:30060 Desulfomonile limimaris 
prokMSA_id:36808 Desulfomonile limimaris 
2.28.4.10.10280 OTU 1 seq
prokMSA_id:10755 Syntrophobacter sp
2.28.4.10.10284 OTU 2 seqs
prokMSA_id:33846 sulphate reducing DSB-DSa99-9 
prokMSA_id:72386 sulphate reducing DSB-DSa99-10 
2.28.4.10.10357 OTU 1 seq
prokMSA_id:16334 delta n30r 
2.28.4.10.10368 OTU 3 seqs
prokMSA_id:25091 Desulfomonile sp. clone 651
prokMSA_id:39526 Desulfomonile sp. clone 650
prokMSA_id:42269 Desulfomonile sp. clone 624
2.28.4.10.10381 OTU 2 seqs
prokMSA_id:10781 clone WFeA1-10. AF050537
prokMSA_id:63265 clone FW133 
2.28.4.10.9661 OTU 2 seqs
prokMSA_id:66902 clone SHD-1
prokMSA_id:77303 K-4b1 
2.28.4.10.9678 OTU 1 seq
prokMSA_id:63331 clone RCP1-85 
2.28.4.10.9687 OTU 1 seq
prokMSA_id:36814 Thermodesulforhabdus sp. nov. M40/2 CIV-3.2 
2.28.4.10.9693 OTU 1 seq
prokMSA_id:71864 Desulfoarculus baarsii DSM 2075 
2.28.4.10.9729 OTU 1 seq
prokMSA_id:41940 Thermus sp. clone 
2.28.4.10.9763 OTU 1 seq
prokMSA_id:55539 delta clone SLM-DSBAC-74 
2.28.4.10.9780 OTU 1 seq
prokMSA_id:48894 sulphate reducing DSB-DSa99-8 
2.28.4.10.9799 OTU 1 seq
prokMSA_id:22050 sulphate reducing DSB-DSa99-5 
2.28.4.10.9800 OTU 2 seqs
prokMSA_id:63260 clone FW57 
prokMSA_id:75569 clone JG36-TzT-55
2.28.4.10.9846 OTU 1 seq
prokMSA_id:10756 clone Sva0812b
2.28.4.10.9848 OTU 1 seq
prokMSA_id:10759 Desulforhabdus amnigenus str. ASRB1
2.28.4.10.9865 OTU 1 seq
prokMSA_id:10778 clone WsCH54
2.28.4.10.9917 OTU 3 seqs
prokMSA_id:10763 clone OPB33. AF026987
prokMSA_id:10764 clone OPB8. AF026988
prokMSA_id:10765 clone OPB78
2.28.4.10.9938 OTU 1 seq
prokMSA_id:42456 clone clB10 
2.28.4.10.9948 OTU 1 seq
prokMSA_id:10772 clone OPT56
2.28.4.10.9946 OTU 1 seq
prokMSA_id:10770 clone OPT47
2.28.4.10.9947 OTU 1 seq
prokMSA_id:10771 clone OPB16
2.28.4.10.9949 OTU 1 seq
prokMSA_id:10775 Desulfoarculus BG74 str. BG74
2.28.4.10.9951 OTU 1 seq
prokMSA_id:63250 clone FW13 
2.28.4.10.9961 OTU 1 seq
prokMSA_id:10777 clone HstpL68
2.28.4.10.9975 OTU 1 seq
prokMSA_id:59898 delta clone ccslm247 
2.28.4.10.9978 OTU 1 seq
prokMSA_id:66926 clone SHA-50
2.28.4.10.9982 OTU 3 seqs
prokMSA_id:50160 delta MERTZ_2CM_7 
prokMSA_id:51575 delta MERTZ_2CM_165 
prokMSA_id:78365 delta clone Hyd89-23 AJ535245
2.28.4.10.9986 OTU 1 seq
prokMSA_id:10782 clone BURTON-8
2.28.4.11 DBB.PROPIONICUS_ASSEMBLAGE 103 seqs
2.28.4.11.10032 OTU 3 seqs
prokMSA_id:19356 clone GOUTA17 
prokMSA_id:59934 clone ccs202 
prokMSA_id:62385 delta clone FTLpost26 
2.28.4.11.10047 OTU 4 seqs
prokMSA_id:69919 isolate a1b009 
prokMSA_id:71031 isolate a2b016 
prokMSA_id:77915 delta clone Hyd24-08
prokMSA_id:77927 delta clone Hyd89-40
2.28.4.11.10062 OTU 7 seqs
prokMSA_id:67777 isolate C1_B030 
prokMSA_id:73292 isolate C1_B040 
prokMSA_id:77746 delta clone Hyd01-30
prokMSA_id:77788 delta clone Hyd01-07
prokMSA_id:78284 delta clone Hyd01-17
prokMSA_id:78398 delta clone Hyd24-11
prokMSA_id:78851 Desulforhopalus sp. clone SB1_46 AY177789
2.28.4.11.10118 OTU 1 seq
prokMSA_id:63781 Verrucomicrobia clone LD1-PA38 
2.28.4.11.10097 OTU 1 seq
prokMSA_id:79377 sequences clone: IndB2-42
2.28.4.11.10107 OTU 1 seq
prokMSA_id:77940 delta clone Hyd24-30
2.28.4.11.10154 OTU 2 seqs
prokMSA_id:36010 delta clone ST-12K13 AJ347756
prokMSA_id:84621 delta clone DBBB-70 
2.28.4.11.10172 OTU 2 seqs
prokMSA_id:41043 Desulfobulbus sp. oral clone R004 
prokMSA_id:47698 Desulfobulbus sp. oral clone CH031 
2.28.4.11.10159 OTU 1 seq
prokMSA_id:46630 sulfate-reducing clone:39B
2.28.4.11.10133 OTU 1 seq
prokMSA_id:42347 Desulfobulbus sp. 'McCal 25m' 
2.28.4.11.10200 OTU 1 seq
prokMSA_id:10819 str. LSv54
2.28.4.11.10199 OTU 1 seq
prokMSA_id:10818 str. LSv514
2.28.4.11.10220 OTU 1 seq
prokMSA_id:26233 delta MERTZ_21CM_386 
2.28.4.11.10187 OTU 1 seq
prokMSA_id:62717 delta clone ML623J-57 
2.28.4.11.10191 OTU 1 seq
prokMSA_id:67800 isolate a1b003 
2.28.4.11.10202 OTU 1 seq
prokMSA_id:47136 delta MERTZ_2CM_141 
2.28.4.11.10236 OTU 1 seq
prokMSA_id:10794 Desulfocapsa sulfoexigens str. SB164P1
2.28.4.11.10258 OTU 1 seq
prokMSA_id:71200 delta isolate Eel-TE1B5 
2.28.4.11.10235 OTU 1 seq
prokMSA_id:10793 clone WCHB1-67
2.28.4.11.10242 OTU 1 seq
prokMSA_id:78670 Desulfocapsa sp. clone SB1_88 
2.28.4.11.10303 OTU 1 seq
prokMSA_id:34639 delta MERTZ_2CM_46 
2.28.4.11.10300 OTU 9 seqs
prokMSA_id:10792 Desulfocapsa thiozymogenes str. Bra2 DSM 7269
prokMSA_id:10797 clone 113. AJ389623
prokMSA_id:10800 clone 282
prokMSA_id:10801 clone 330. AJ389627
prokMSA_id:10802 clone 348
prokMSA_id:10803 clone 368
prokMSA_id:69671 Desulfocapsa sp. Cad626 
prokMSA_id:81455 Desulfocapsa sp. clone BIOEST-35
prokMSA_id:90670 clone ZB1 AY327185
2.28.4.11.10299 OTU 1 seq
prokMSA_id:44862 ODPB-B4 
2.28.4.11.10316 OTU 1 seq
prokMSA_id:26125 clone 33-PA52B00 
2.28.4.11.10311 OTU 1 seq
prokMSA_id:79101 Cytophaga sp. BHI60-57B strain BHI60-57B
2.28.4.11.10367 OTU 1 seq
prokMSA_id:10820 str. BD7-15
2.28.4.11.10328 OTU 2 seqs
prokMSA_id:10787 Desulfobulbus elongatus str. FP DSM 2908
prokMSA_id:77552 clone R1p15 
2.28.4.11.10355 OTU 1 seq
prokMSA_id:10811 Desulfobacterium catecholicum DSM 3882
2.28.4.11.10329 OTU 1 seq
prokMSA_id:39590 delta SA82 
2.28.4.11.10332 OTU 7 seqs
prokMSA_id:10815 str. LSv53
prokMSA_id:10816 str. LSv23
prokMSA_id:10817 str. LSv24
prokMSA_id:10821 str. JTB20
prokMSA_id:10828 str. LSv53
prokMSA_id:78896 Desulforhopalus sp. clone SB1_78 
prokMSA_id:78959 Desulforhopalus sp. clone SB4_58 
2.28.4.11.10371 OTU 2 seqs
prokMSA_id:77808 delta clone Hyd24-21
prokMSA_id:78211 delta clone Hyd01-14
2.28.4.11.10378 OTU 1 seq
prokMSA_id:10827 clone Sva0999
2.28.4.11.10377 OTU 2 seqs
prokMSA_id:10822 clone Sva0113. AJ240982
prokMSA_id:10826 clone Sva0754
2.28.4.11.9660 OTU 3 seqs
prokMSA_id:10809 Desulforhopalus vacuolatus str. ltk10
prokMSA_id:10814 Desulforhopalus LSv20 str. LSv20
prokMSA_id:72238 Desulforhopalus vacuolatus L42613
2.28.4.11.9673 OTU 1 seq
prokMSA_id:10834 str. NKB13
2.28.4.11.9674 OTU 1 seq
prokMSA_id:21964 delta MERTZ_2CM_340 
2.28.4.11.9695 OTU 3 seqs
prokMSA_id:10796 clone 22. AJ389622
prokMSA_id:10798 clone 141
prokMSA_id:40598 mRNA clone sipK93
2.28.4.11.9705 OTU 1 seq
prokMSA_id:77760 delta clone Hyd01-n
2.28.4.11.9738 OTU 1 seq
prokMSA_id:71121 delta isolate Eel-BE1A3 
2.28.4.11.9734 OTU 4 seqs
prokMSA_id:61880 delta clone R103-B13 
prokMSA_id:61881 delta clone R103-B27 
prokMSA_id:61882 delta clone R103-B54 AF449227
prokMSA_id:61884 delta clone R103-B53 AF449226
2.28.4.11.9741 OTU 1 seq
prokMSA_id:76068 delta clone JG37-AG-30
2.28.4.11.9739 OTU 2 seqs
prokMSA_id:77619 delta clone Hyd89-51
prokMSA_id:78189 delta clone Hyd89-08
2.28.4.11.9743 OTU 1 seq
prokMSA_id:70322 Psychrophilic sulfate-reducing LSv22 
2.28.4.11.9746 OTU 1 seq
prokMSA_id:74052 delta isolate Eel-36e1D7 
2.28.4.11.9756 OTU 1 seq
prokMSA_id:10825 clone Sva0443
2.28.4.11.9775 OTU 1 seq
prokMSA_id:10829 Desulfobulbus rhabdoformis str. M16 DSM 8777
2.28.4.11.9807 OTU 1 seq
prokMSA_id:10830 Desulfobulbus BG25 str. BG25
2.28.4.11.9817 OTU 1 seq
prokMSA_id:10832 clone Sar276
2.28.4.11.9822 OTU 1 seq
prokMSA_id:47606 delta MERTZ_2CM_260 
2.28.4.11.9824 OTU 1 seq
prokMSA_id:10837 clone Sva0631
2.28.4.11.9831 OTU 1 seq
prokMSA_id:10839 Desulfofustis glycolicus str. PerGlyS
2.28.4.11.9837 OTU 1 seq
prokMSA_id:34365 clone clB15 
2.28.4.11.9857 OTU 1 seq
prokMSA_id:10840 str. WH26
2.28.4.11.9856 OTU 4 seqs
prokMSA_id:10790 clone Sva1035. AJ240966
prokMSA_id:10791 clone Sva1041
prokMSA_id:10833 str. BD1-2
prokMSA_id:10836 clone Sva0103
2.28.4.11.9871 OTU 2 seqs
prokMSA_id:23990 Q3-6C17 AY048892
prokMSA_id:75871 delta clone JG37-AG-118
2.28.4.11.9891 OTU 1 seq
prokMSA_id:10788 unnamed organism
2.28.4.11.9901 OTU 1 seq
prokMSA_id:22073 Desulfobulbus sp. 'Ace 16m' 
2.28.4.11.9907 OTU 1 seq
prokMSA_id:80324 clone Bol88 
2.28.4.11.9923 OTU 1 seq
prokMSA_id:44052 GR-Sh2-18 clone GR-Sh2-18
2.28.4.11.9931 OTU 1 seq
prokMSA_id:24902 clone Car93rb 
2.28.4.11.9952 OTU 1 seq
prokMSA_id:81065 clone KM85 
2.28.4.12 SYNTROPHUS_GROUP 37 seqs
2.28.4.12.10034 OTU 1 seq
prokMSA_id:10858 Syntrophus sp
2.28.4.12.10025 OTU 1 seq
prokMSA_id:10859 Syntrophus sp
2.28.4.12.10033 OTU 1 seq
prokMSA_id:10856 clone SCALE-11
2.28.4.12.10050 OTU 1 seq
prokMSA_id:66927 clone SHA-51
2.28.4.12.10067 OTU 11 seqs
prokMSA_id:18138 clone BA053 complete 
prokMSA_id:25179 clone BA003 complete AF323758
prokMSA_id:27573 clone BA039 complete 
prokMSA_id:32886 clone BA044 complete 
prokMSA_id:82811 Syntrophus sp. clone PD-UASB-35 
prokMSA_id:83667 Syntrophus sp. clone PD-UASB-5 AY261816
prokMSA_id:84489 Syntrophus sp. clone PD-UASB-54 AY261817
prokMSA_id:85759 Syntrophus sp. clone PD-UASB-57 
prokMSA_id:86627 Syntrophus sp. clone PD-UASB-40 AY261815
prokMSA_id:89665 clone TA55_Ba_114 AY297981
prokMSA_id:90620 clone TA55_Ba_133 AY297985
2.28.4.12.10094 OTU 2 seqs
prokMSA_id:10844 Syntrophus buswellii str. DM-3 DSM 02612
prokMSA_id:10846 clone vadinBC38
2.28.4.12.10310 OTU 1 seq
prokMSA_id:48781 TA07 
2.28.4.12.10362 OTU 1 seq
prokMSA_id:56266 clone SHA-79
2.28.4.12.9665 OTU 2 seqs
prokMSA_id:10849 Syntrophus gentianae str. HQGoe1 DSM 8423
prokMSA_id:66928 clone SHA-42
2.28.4.12.9700 OTU 1 seq
prokMSA_id:24941 UASB_TL12 complete 
2.28.4.12.9762 OTU 1 seq
prokMSA_id:34985 AT425_EubF5 
2.28.4.12.9764 OTU 1 seq
prokMSA_id:23625 clone p-4193-6Wa5 
2.28.4.12.9842 OTU 3 seqs
prokMSA_id:10853 clone 7
prokMSA_id:10860 Smithella propionica str. LYP
prokMSA_id:77388 clone R4b16 
2.28.4.12.9882 OTU 1 seq
prokMSA_id:10845 clone SJA-63
2.28.4.12.9903 OTU 1 seq
prokMSA_id:32779 RFLP40 
2.28.4.12.9909 OTU 1 seq
prokMSA_id:10854 Syntrophus ACE-34
2.28.4.12.9918 OTU 1 seq
prokMSA_id:10855 Syntrophus ACE-20
2.28.4.12.9922 OTU 1 seq
prokMSA_id:10857 Syntrophus sp
2.28.4.12.9930 OTU 1 seq
prokMSA_id:71533 clone BA069 complete 
2.28.4.12.9935 OTU 1 seq
prokMSA_id:63262 clone FW117 
2.28.4.12.9945 OTU 1 seq
prokMSA_id:48110 BA18 
2.28.4.12.9958 OTU 1 seq
prokMSA_id:63258 clone FW99 
2.28.4.12.9974 OTU 1 seq
prokMSA_id:21347 delta clone 36-11 
2.28.4.13 DESULFOBACTER_GROUP 261 seqs
2.28.4.13.1 DSF.LIMICOLA_SUBGROUP 153 seqs
2.28.4.13.1.10017 OTU 1 seq
prokMSA_id:70417 delta isolate SB-24e1C6 
2.28.4.13.1.10000 OTU 1 seq
prokMSA_id:36298 delta MERTZ_2CM_224 
2.28.4.13.1.10037 OTU 1 seq
prokMSA_id:36468 delta MERTZ_2CM_195 
2.28.4.13.1.10078 OTU 1 seq
prokMSA_id:10872 clone ACE-32
2.28.4.13.1.10073 OTU 1 seq
prokMSA_id:10875 unnamed organism
2.28.4.13.1.10116 OTU 1 seq
prokMSA_id:29306 delta MERTZ_2CM_23 
2.28.4.13.1.10115 OTU 1 seq
prokMSA_id:10873 clone CLEAR-27
2.28.4.13.1.10114 OTU 1 seq
prokMSA_id:10871 clone PENDANT-25
2.28.4.13.1.10103 OTU 1 seq
prokMSA_id:10869 Desulfonema magnum str. Montpellier DSM 2077
2.28.4.13.1.10102 OTU 1 seq
prokMSA_id:10867 Desulfocella halophila str. GSL-But2
2.28.4.13.1.10130 OTU 1 seq
prokMSA_id:22240 clone Car148rc 
2.28.4.13.1.10117 OTU 1 seq
prokMSA_id:10876 str. S2551
2.28.4.13.1.10158 OTU 1 seq
prokMSA_id:52002 RFLP25 
2.28.4.13.1.10157 OTU 1 seq
prokMSA_id:29555 delta MERTZ_21CM_196 
2.28.4.13.1.10152 OTU 1 seq
prokMSA_id:34381 clone Car99rb 
2.28.4.13.1.10164 OTU 1 seq
prokMSA_id:22644 delta MERTZ_2CM_229 
2.28.4.13.1.10194 OTU 1 seq
prokMSA_id:31848 Desulforegula conservatrix 
2.28.4.13.1.10228 OTU 1 seq
prokMSA_id:71766 delta isolate Eel-BE1B3 
2.28.4.13.1.10183 OTU 1 seq
prokMSA_id:23602 delta MERTZ_2CM_30 
2.28.4.13.1.10267 OTU 1 seq
prokMSA_id:77873 delta clone Hyd89-61
2.28.4.13.1.10268 OTU 1 seq
prokMSA_id:71734 delta clone SLM-DSBAC-75 
2.28.4.13.1.10256 OTU 1 seq
prokMSA_id:81354 clone KM88 
2.28.4.13.1.10276 OTU 1 seq
prokMSA_id:50478 delta MERTZ_2CM_32 
2.28.4.13.1.10305 OTU 3 seqs
prokMSA_id:24500 sulphate reducing DSB-DSb99-2 
prokMSA_id:39493 sulphate reducing DSB-DSb99-1 clone DSB-DSb99-1 AJ300507
prokMSA_id:41496 sulphate reducing DSB-DSa99-4 
2.28.4.13.1.10293 OTU 1 seq
prokMSA_id:47732 delta clone CD12B1 
2.28.4.13.1.10304 OTU 1 seq
prokMSA_id:26478 delta MERTZ_2CM_222 
2.28.4.13.1.10325 OTU 1 seq
prokMSA_id:35699 delta MERTZ_21CM_204 
2.28.4.13.1.10301 OTU 1 seq
prokMSA_id:45289 delta isolate Eel-36e1H1 
2.28.4.13.1.10306 OTU 4 seqs
prokMSA_id:10866 str. Pnd3
prokMSA_id:47033 Delta S2552 
prokMSA_id:50635 Delta S2550 
prokMSA_id:79514 Desulfobacillum aliphatovorans strain CV2803 
2.28.4.13.1.10374 OTU 2 seqs
prokMSA_id:20823 delta clone 224 
prokMSA_id:34662 delta clone 53 
2.28.4.13.1.10364 OTU 97 seqs
prokMSA_id:10881 clone A52. U08394
prokMSA_id:10882 clone A34. U08389
prokMSA_id:10883 iron sulfide containing magnetotactic clone MMP1990
prokMSA_id:10884 iron sulfide containing magnetotactic clone MMP1991. L06457
prokMSA_id:32185 delta CE53 AF211261
prokMSA_id:33579 ODP8-U3 AF121085
prokMSA_id:36525 delta MERTZ_21CM_335 
prokMSA_id:44649 CLEAR-29 AF146251
prokMSA_id:45852 delta MERTZ_21CM_410 AF424265
prokMSA_id:49238 Desulfonema CE101 
prokMSA_id:56126 Tol-K-1 AB081545
prokMSA_id:59736 clone OB3_136 AY133458
prokMSA_id:59744 clone OB3_142 AY133452
prokMSA_id:59747 clone OB3_87 AY133451
prokMSA_id:61135 isolate MGP DGGE Band 24A AF530123
prokMSA_id:61137 isolate MGP DGGE Band 23 AF530122
prokMSA_id:61142 isolate MGP DGGE Band 19A AF530118
prokMSA_id:63569 clone:CS8.12 AB069803
prokMSA_id:71221 Oil-K-2 AB081535
prokMSA_id:72051 clone INOC-RNA22 AF360639
prokMSA_id:72104 delta isolate Eel-BE1B6 AF354146
prokMSA_id:93594 clone P8-GEO-4 AY361941
prokMSA_id:94313 delta clone PI_nr9_c4 AY374925
prokMSA_id:94314 delta clone PI_486_c7 AY374779
prokMSA_id:94325 delta clone PI_r142_c2 AY374937
prokMSA_id:94341 delta clone PI_r69_c2 AY374772
prokMSA_id:94354 delta clone PI_6RA09 AY374881
prokMSA_id:94365 delta clone PI_6L14 AY374661
prokMSA_id:94389 delta clone PI_6TC02 AY374893
prokMSA_id:94406 delta clone PI_6N83 AY374848
prokMSA_id:94421 delta clone PI_6EC11 AY374818
prokMSA_id:94423 delta clone PI_6M83 AY374830
prokMSA_id:94425 delta clone PI_r172_c2 AY374758
prokMSA_id:94427 delta clone PI_6UF01 AY374899
prokMSA_id:94434 delta clone PI_r95_c2 AY374776
prokMSA_id:94450 delta clone PI_r158_c2 AY374946
prokMSA_id:94454 delta clone PI_6AF12 AY374872
prokMSA_id:94458 delta clone PI_6L03 AY374831
prokMSA_id:94460 delta clone PI_6M43 AY374657
prokMSA_id:94472 delta clone PI_r64_c2 AY374770
prokMSA_id:94479 delta clone PI_6H73 AY374827
prokMSA_id:94507 delta clone PI_6G46 AY374684
prokMSA_id:94508 delta clone PI_nr15_c5 AY374787
prokMSA_id:94556 delta clone PI_6H43 AY374828
prokMSA_id:94567 delta clone PI_6AC11 AY374695
prokMSA_id:94576 delta clone PI_6AH10 AY374707
prokMSA_id:94585 delta clone PI_6UD06 AY374722
prokMSA_id:94594 delta clone PI_nr5_c15 AY374794
prokMSA_id:94611 delta clone PI_nn3_c2 AY374782
prokMSA_id:94626 delta clone PI_6Q89 AY374845
prokMSA_id:94647 delta clone PI_6BB03_D05 AY374860
prokMSA_id:94650 delta clone PI_6Q36 AY374851
prokMSA_id:94679 delta clone PI_r24_c4 AY374957
prokMSA_id:94689 delta clone PI_6RB07 AY374885
prokMSA_id:94738 delta clone PI_nr29_c4 AY374921
prokMSA_id:94743 delta clone PI_6AG06 AY374874
prokMSA_id:94745 delta clone PI_r91_c3 AY374809
prokMSA_id:94752 delta clone PI_r101_c2 AY374926
prokMSA_id:94762 delta clone PI_6UD08 AY374723
prokMSA_id:94793 delta clone PI_nn1_c2 AY374780
prokMSA_id:94795 delta clone PI_6BC12 AY374866
prokMSA_id:94804 delta clone PI_nr17_c3 AY374912
prokMSA_id:94806 delta clone PI_r68_c2 AY374974
prokMSA_id:94820 delta clone PI_r85_c2 AY374773
prokMSA_id:94831 delta clone PI_r107_c2 AY374741
prokMSA_id:94844 delta clone PI_6TE01 AY374898
prokMSA_id:94868 delta clone PI_r156_c2 AY374945
prokMSA_id:94872 delta clone PI_6VA09 AY374713
prokMSA_id:94887 delta clone PI_r73_c2 AY374976
prokMSA_id:94894 delta clone PI_6YE12 AY374824
prokMSA_id:94909 delta clone PI_6UB08 AY374886
prokMSA_id:94918 delta clone PI_r153_c2 AY374943
prokMSA_id:94952 delta clone PI_6Q05 AY374842
prokMSA_id:94956 delta clone PI_r51_c3 AY374969
prokMSA_id:94966 delta clone PI_6L60 AY374833
prokMSA_id:94974 delta clone PI_r99_c2 AY374778
prokMSA_id:94991 delta clone PI_r98_c2 AY374811
prokMSA_id:94995 delta clone PI_r21_c5 AY374956
prokMSA_id:95000 delta clone PI_6O16 AY374838
prokMSA_id:95004 delta clone PI_6VA11 AY374883
prokMSA_id:95011 delta clone PI_6G69 AY374852
prokMSA_id:95020 delta clone PI_r25_c5 AY374804
prokMSA_id:95023 delta clone PI_r41_c5 AY374805
prokMSA_id:95024 delta clone PI_r84_c2 AY374980
prokMSA_id:95028 delta clone PI_6G40 AY374856
prokMSA_id:95033 delta clone PI_nr5_c25 AY374795
prokMSA_id:95038 delta clone PI_6N19 AY374841
prokMSA_id:95039 delta clone PI_r83_c3 AY374807
prokMSA_id:95048 delta clone PI_6D81 AY374675
prokMSA_id:95087 delta clone PI_r45_c3 AY374966
prokMSA_id:95088 delta clone PI_6L27 AY374832
prokMSA_id:95092 delta clone PI_6O92 AY374834
prokMSA_id:95119 delta clone PI_r16_c5 AY374757
prokMSA_id:95141 delta clone PI_nr27_c3 AY374919
prokMSA_id:95143 delta clone PI_6BB04 AY374861
prokMSA_id:95145 delta clone PI_r46_c3 AY374967
prokMSA_id:95161 delta clone PI_6BD11 AY374870
2.28.4.13.1.10344 OTU 1 seq
prokMSA_id:73235 isolate CS_B014 
2.28.4.13.1.9685 OTU 1 seq
prokMSA_id:18378 delta isolate Eel-36e1H6 
2.28.4.13.1.9696 OTU 1 seq
prokMSA_id:44839 delta MERTZ_2CM_190 
2.28.4.13.1.9715 OTU 1 seq
prokMSA_id:47815 delta MERTZ_2CM_130 
2.28.4.13.1.9752 OTU 1 seq
prokMSA_id:52376 sulphate reducing DSB-DSb99-3 
2.28.4.13.1.9765 OTU 1 seq
prokMSA_id:50014 delta DSS55 
2.28.4.13.1.9776 OTU 1 seq
prokMSA_id:24077 Desulfococcus multivorans DSM 2059 
2.28.4.13.1.9797 OTU 1 seq
prokMSA_id:69464 delta MT25 
2.28.4.13.1.9810 OTU 1 seq
prokMSA_id:38445 delta MERTZ_2CM_324 
2.28.4.13.1.9821 OTU 1 seq
prokMSA_id:37002 SY6-81 
2.28.4.13.1.9818 OTU 1 seq
prokMSA_id:81529 clone KM62 
2.28.4.13.1.9887 OTU 1 seq
prokMSA_id:26350 delta DSS5 
2.28.4.13.1.9928 OTU 1 seq
prokMSA_id:70799 delta isolate SB-24e1B12 
2.28.4.13.1.9926 OTU 1 seq
prokMSA_id:46593 Desulfococcus biacutus strain DSM 5651T
2.28.4.13.1.9969 OTU 1 seq
prokMSA_id:35610 delta TK02 
2.28.4.13.1.9971 OTU 2 seqs
prokMSA_id:16532 delta MERTZ_2CM_220 
prokMSA_id:36429 delta MERTZ_21CM_340 
2.28.4.13.1.9981 OTU 1 seq
prokMSA_id:51809 delta DSS7 
2.28.4.13.1.9999 OTU 2 seqs
prokMSA_id:78071 clone:Rs-J96
prokMSA_id:81819 clone: Rs-010
2.28.4.13.2 DSS.VARIABILIS_SUBGROUP 67 seqs
2.28.4.13.2.10004 OTU 2 seqs
prokMSA_id:10897 Desulfonema ishimotoei str. from anaerobic mud of the intert
prokMSA_id:10898 Desulfonema ishimotoei str. from anaerobic marine mud of Tok
2.28.4.13.2.10046 OTU 11 seqs
prokMSA_id:10878 clone Sva0081
prokMSA_id:10879 clone Sva0863
prokMSA_id:10887 Desulfosarcina variabilis str. 3 be 13 Montpellier DSM 2060
prokMSA_id:10888 Desulfobacterium cetonicum str. oil recovery water DSM 7267
prokMSA_id:10889 str. oXyS1
prokMSA_id:10894 str. Hxd3. Y17698
prokMSA_id:19549 Olavius algarvensis sulfate-reducing endosymbiont 
prokMSA_id:67851 delta clone 44a-B1-10 
prokMSA_id:78122 delta clone Hyd89-21
prokMSA_id:78353 delta clone Hyd89-63
prokMSA_id:78667 Desulfosarcina sp. clone SB4_53 
2.28.4.13.2.10061 OTU 1 seq
prokMSA_id:24313 delta MERTZ_21CM_413 
2.28.4.13.2.10091 OTU 4 seqs
prokMSA_id:21892 clone PCEDR694 
prokMSA_id:24505 clone PCEDR702 
prokMSA_id:39862 clone PCEDR691 
prokMSA_id:51360 clone PCEDR13 
2.28.4.13.2.10134 OTU 1 seq
prokMSA_id:17347 delta MERTZ_2CM_274 
2.28.4.13.2.10222 OTU 1 seq
prokMSA_id:48164 delta DSS57 
2.28.4.13.2.10257 OTU 1 seq
prokMSA_id:10905 clone SB-29
2.28.4.13.2.10239 OTU 1 seq
prokMSA_id:66102 delta clone:KU32
2.28.4.13.2.10266 OTU 1 seq
prokMSA_id:45971 delta clone:TYM--12 
2.28.4.13.2.10245 OTU 1 seq
prokMSA_id:17424 Saltmarsh clone LCP-80 
2.28.4.13.2.10265 OTU 1 seq
prokMSA_id:35645 delta DSS1 
2.28.4.13.2.10320 OTU 1 seq
prokMSA_id:38237 clone Car95fb 
2.28.4.13.2.10315 OTU 1 seq
prokMSA_id:38926 delta SA56 
2.28.4.13.2.10319 OTU 1 seq
prokMSA_id:74021 delta clone SLM-CP-116 
2.28.4.13.2.10342 OTU 1 seq
prokMSA_id:39986 AT425_EubD9 
2.28.4.13.2.10365 OTU 1 seq
prokMSA_id:20214 delta MERTZ_2CM_176 
2.28.4.13.2.10379 OTU 1 seq
prokMSA_id:38404 clone GOUTB1 
2.28.4.13.2.9675 OTU 1 seq
prokMSA_id:10886 clone 2BP-6
2.28.4.13.2.9677 OTU 2 seqs
prokMSA_id:28632 clone Car58fc 
prokMSA_id:37303 clone Car45fc 
2.28.4.13.2.9681 OTU 1 seq
prokMSA_id:65440 Delta EbS7 strain EbS7
2.28.4.13.2.9691 OTU 1 seq
prokMSA_id:10890 str. mXyS
2.28.4.13.2.9697 OTU 1 seq
prokMSA_id:10891 str. AK-01
2.28.4.13.2.9699 OTU 1 seq
prokMSA_id:10893 clone vadinHA60
2.28.4.13.2.9702 OTU 1 seq
prokMSA_id:10895 clone CLEAR-2
2.28.4.13.2.9703 OTU 1 seq
prokMSA_id:43896 delta MERTZ_21CM_102 
2.28.4.13.2.9706 OTU 1 seq
prokMSA_id:10899 clone GCA017
2.28.4.13.2.9730 OTU 1 seq
prokMSA_id:78733 Desulfosarcina sp. clone SB1_34 
2.28.4.13.2.9771 OTU 1 seq
prokMSA_id:27380 delta MERTZ_2CM_37 
2.28.4.13.2.9793 OTU 1 seq
prokMSA_id:34756 clone Car113fc 
2.28.4.13.2.9794 OTU 1 seq
prokMSA_id:40264 delta NaphS2 
2.28.4.13.2.9813 OTU 3 seqs
prokMSA_id:57453 delta clone P. palm A 205
prokMSA_id:67797 isolate a2b040 
prokMSA_id:70385 isolate a2b020 
2.28.4.13.2.9873 OTU 1 seq
prokMSA_id:10900 str. PSv29
2.28.4.13.2.9880 OTU 1 seq
prokMSA_id:10902 str. LSv21
2.28.4.13.2.9878 OTU 1 seq
prokMSA_id:10901 str. ASv26
2.28.4.13.2.9885 OTU 1 seq
prokMSA_id:10903 unnamed organism
2.28.4.13.2.9890 OTU 1 seq
prokMSA_id:77960 delta clone:Rs-K70
2.28.4.13.2.9886 OTU 1 seq
prokMSA_id:10904 clone SB-21
2.28.4.13.2.9893 OTU 1 seq
prokMSA_id:52092 Bdellovibrio sp. AQ 
2.28.4.13.2.9899 OTU 1 seq
prokMSA_id:10906 clone SB-30
2.28.4.13.2.9897 OTU 1 seq
prokMSA_id:82326 clone KM95 
2.28.4.13.2.9904 OTU 1 seq
prokMSA_id:10908 clone Sva0516
2.28.4.13.2.9913 OTU 1 seq
prokMSA_id:63261 clone FW113 
2.28.4.13.2.9916 OTU 1 seq
prokMSA_id:10909 clone Sva0405
2.28.4.13.2.9925 OTU 1 seq
prokMSA_id:78056 delta clone Hyd89-22
2.28.4.13.2.9942 OTU 1 seq
prokMSA_id:16656 delta MERTZ_2CM_76 
2.28.4.13.2.9939 OTU 1 seq
prokMSA_id:70859 delta isolate Eel-36e1G12 
2.28.4.13.2.9954 OTU 1 seq
prokMSA_id:43483 delta MERTZ_21CM_256 
2.28.4.13.2.9965 OTU 1 seq
prokMSA_id:32846 delta isolate Eel-BE1C3 
2.28.4.13.2.9964 OTU 1 seq
prokMSA_id:41841 delta DSS63 
2.28.4.13.2.9995 OTU 1 seq
prokMSA_id:71994 Desulfomusa hansenii 
2.28.4.13.7 DSB.POSTGATEI_SUBGROUP 41 seqs
2.28.4.13.7.10002 OTU 1 seq
prokMSA_id:10934 Desulfobotulus BG14 str. BG14
2.28.4.13.7.10006 OTU 1 seq
prokMSA_id:32393 delta clone Sva0605 
2.28.4.13.7.10031 OTU 1 seq
prokMSA_id:78513 Desulfobacula sp. clone SB1_49 
2.28.4.13.7.10083 OTU 2 seqs
prokMSA_id:67544 Desulfobacter latus strain DSM 3381
prokMSA_id:74171 Desulfobacter curvatus DSM 3379 
2.28.4.13.7.10057 OTU 1 seq
prokMSA_id:48770 delta MT22 
2.28.4.13.7.10039 OTU 1 seq
prokMSA_id:71601 Desulfobacterium autotrophicum DSM 3382 
2.28.4.13.7.10072 OTU 2 seqs
prokMSA_id:10923 Desulfobacter BG8 str. BG8
prokMSA_id:10924 Desulfobacter BG23 str. BG23
2.28.4.13.7.10136 OTU 2 seqs
prokMSA_id:70182 isolate CS_B008 
prokMSA_id:86333 clone B01R011 
2.28.4.13.7.10148 OTU 7 seqs
prokMSA_id:10929 str. S2651
prokMSA_id:31826 Desulfotignum balticum 
prokMSA_id:40669 CHA3-118 clone CHA3-118
prokMSA_id:51719 Desulfotignum balticum DSM 7044 
prokMSA_id:52280 CHA3-100 clone CHA3-100
prokMSA_id:59113 Desulfotignum phosphitoxidans strain FiPS3 
prokMSA_id:59114 Desulfotignum phosphitoxidans strain FiPS5 
2.28.4.13.7.10226 OTU 1 seq
prokMSA_id:10938 Desulfobacterium LSv25 str. LSv25
2.28.4.13.7.10252 OTU 1 seq
prokMSA_id:10942 clone SB-9
2.28.4.13.7.10275 OTU 1 seq
prokMSA_id:78421 Desulfobacteraceae 
2.28.4.13.7.10323 OTU 1 seq
prokMSA_id:10937 Desulfobacterium niacini str. PM4
2.28.4.13.7.9712 OTU 1 seq
prokMSA_id:78718 Desulfobacula sp. clone SB4_98 
2.28.4.13.7.9737 OTU 3 seqs
prokMSA_id:10933 Desulfobacula toluolica str. Tol2 DSM 7467
prokMSA_id:10936 Desulfobacterium phenolicum str. marine mud DSM 3384
prokMSA_id:67542 Desulfobacula toluolica strain DSM 7467
2.28.4.13.7.9777 OTU 2 seqs
prokMSA_id:84285 clone B04R008 
prokMSA_id:86388 clone B01R004 
2.28.4.13.7.9867 OTU 1 seq
prokMSA_id:10922 Desulfobacter vibrioformis str. B54 DSMZ 8776
2.28.4.13.7.9877 OTU 1 seq
prokMSA_id:10927 unnamed organism
2.28.4.13.7.9889 OTU 1 seq
prokMSA_id:10928 Desulfobacter ASv25 str. ASv25
2.28.4.13.7.9892 OTU 1 seq
prokMSA_id:28971 Delta S2450 
2.28.4.13.7.9919 OTU 1 seq
prokMSA_id:10939 str. JTB133
2.28.4.13.7.9915 OTU 1 seq
prokMSA_id:10935 Desulfobacterium BG33 str. BG33
2.28.4.13.7.9941 OTU 1 seq
prokMSA_id:10940 Desulfospira joergensenii str. B331 DSM 10085
2.28.4.13.7.9943 OTU 1 seq
prokMSA_id:10941 Desulfobacterium BG18 str. BG18
2.28.4.13.7.9940 OTU 1 seq
prokMSA_id:78986 Desulfobacula sp. clone SB2_56 
2.28.4.13.7.9944 OTU 1 seq
prokMSA_id:10943 Desulfobacterium BSv41 str. BSv41
2.28.4.13.7.9963 OTU 1 seq
prokMSA_id:47877 Desulfobacterium vacuolatum DSM 3385 
2.28.4.13.7.9977 OTU 1 seq
prokMSA_id:10926 Desulfobacter halotolerans
2.28.4.13.7.9976 OTU 1 seq
prokMSA_id:10925 Desulfobacter BG72 str. BG72
2.28.5 EPSILON_SUBDIVISION 597 seqs
2.28.5.1 HELICOBACTER_AND_RELATIVES 177 seqs
2.28.5.1.1 HLB.PYLORI_SUBGROUP 173 seqs
2.28.5.1.1.10399 OTU 2 seqs
prokMSA_id:34981 epsilon 1070 
prokMSA_id:66099 epsilon clone:KB36 AB074953
2.28.5.1.1.10385 OTU 1 seq
prokMSA_id:11008 Helicobacter 'pig E1'
2.28.5.1.1.10386 OTU 1 seq
prokMSA_id:39617 Cilia-associated respiratory B6 
2.28.5.1.1.10415 OTU 1 seq
prokMSA_id:74305 Helicobacter sp. 'MIT 94-022' 
2.28.5.1.1.10436 OTU 14 seqs
prokMSA_id:10964 Helicobacter trogontum str. LRB 8581
prokMSA_id:10976 Helicobacter hepaticus str. FRED1
prokMSA_id:11040 Helicobacter muridarum str. UNSW 1.7st
prokMSA_id:11041 Helicobacter muridarum str. UNSW 1.6cae
prokMSA_id:16301 Helicobacter sp. 'MIT 97-6194-5' 
prokMSA_id:25488 Helicobacter muridarum 
prokMSA_id:26677 Helicobacter sp. Wee Tee 
prokMSA_id:48289 Helicobacter aurati complete 
prokMSA_id:49735 Helicobacter sp. MIT 99-5507 
prokMSA_id:69782 Helicobacter sp. HC15880 
prokMSA_id:74512 Helicobacter sp. isolate 11934
prokMSA_id:81282 Helicobacter sp. MIT 01-6242 
prokMSA_id:82083 Helicobacter sp. MIT 01-5924 AY203903
prokMSA_id:82242 Helicobacter sp. MIT 01-5529A 
2.28.5.1.1.10444 OTU 3 seqs
prokMSA_id:11015 Helicobacter suncus str. Kaz-1
prokMSA_id:11016 Helicobacter suncus str. Kaz-2
prokMSA_id:28993 Helicobacter typhlonicus AF061104
2.28.5.1.1.10443 OTU 13 seqs
prokMSA_id:10946 Helicobacter pylori ATCC 43504
prokMSA_id:10958 Helicobacter pylori str. MC123
prokMSA_id:10959 Helicobacter 'liver 4' str. liver 4
prokMSA_id:10973 Helicobacter pylori str. 85D08 ATCC 51407
prokMSA_id:10975 Helicobacter 'liver 1' str. liver 1
prokMSA_id:11013 Helicobacter pylori NCTC 11637
prokMSA_id:11018 Helicobacter pylori str. MC937
prokMSA_id:11084 Helicobacter pylori str. MC903
prokMSA_id:11086 Helicobacter pylori NCTC 11638
prokMSA_id:31459 Helicobacter nemestrinae 
prokMSA_id:57708 Helicobacter pylori strain Lit81 
prokMSA_id:57709 Helicobacter pylori strain Lit76 
prokMSA_id:57710 Helicobacter pylori strain Lit69 
2.28.5.1.1.10442 OTU 14 seqs
prokMSA_id:10949 Helicobacter pylori str. 26695 =
prokMSA_id:10952 Helicobacter pylori ATCC 43504
prokMSA_id:11014 Helicobacter mustelae str. 91-292-E1A Fox. M88156
prokMSA_id:11045 Helicobacter bilis str. MIT 97-6456. AF047847
prokMSA_id:11046 Helicobacter pullorum str. MIT 92-7458. AF047850
prokMSA_id:24309 Helicobacter cetorum MIT 00-7128 
prokMSA_id:31862 Helicobacter sp. YMRC 000428 
prokMSA_id:52884 Helicobacter apodemus 
prokMSA_id:64304 Helicobacter heilmannii strain TD1 
prokMSA_id:72792 Helicobacter cetorum strain MIT 99-5656 
prokMSA_id:74354 Helicobacter sp. 'MIT 99-5657' 
prokMSA_id:74909 Helicobacter pylori strain 1205 
prokMSA_id:76377 Helicobacter cetorum MIT 01-6202 
prokMSA_id:77094 Helicobacter cetorum MIT 00-5903 
2.28.5.1.1.10451 OTU 11 seqs
prokMSA_id:10968 Helicobacter salomonis str. 4
prokMSA_id:10969 Helicobacter heilmannii str. AF53
prokMSA_id:10999 "Gastrospirillum hominis" str. 2
prokMSA_id:11000 Helicobacter 'pig C2'
prokMSA_id:11029 Helicobacter felis str. 144-10
prokMSA_id:11030 Helicobacter felis str. 1136-7
prokMSA_id:11031 Helicobacter bizzozeronii str. 865-2
prokMSA_id:11034 Helicobacter heilmannii str. 1
prokMSA_id:64312 Helicobacter heilmannii strain HU2 
prokMSA_id:64317 Helicobacter heilmannii strain C4S 
prokMSA_id:72292 Helicobacter heilmannii strain WD1 
2.28.5.1.1.10454 OTU 5 seqs
prokMSA_id:10951 Helicobacter pametensis str. Seymour B15 CCUG 29259
prokMSA_id:11047 Helicobacter 'ATCC 43968' ATCC 43968
prokMSA_id:11050 Helicobacter cholecystus str. Hkb-1 ATCC 700242
prokMSA_id:11067 Helicobacter pullorum NCTC 12826
prokMSA_id:50310 Helicobacter pametensis 
2.28.5.1.1.10462 OTU 7 seqs
prokMSA_id:10983 Helicobacter rodentium str. MIT 95-1707 ATCC 700285
prokMSA_id:10990 Helicobacter rodentium str. MIT 96-1312
prokMSA_id:10991 Helicobacter 'MIT 95-2011' str. MIT 95-2011
prokMSA_id:16734 clone p-4283-4Wa3 
prokMSA_id:27055 Helicobacter sp. MIT 99-5504 
prokMSA_id:34144 Helicobacter sp. MIT 99-5501 
prokMSA_id:42376 Helicobacter sp. MIT 00-7129 AF455131
2.28.5.1.1.10428 OTU 5 seqs
prokMSA_id:11021 Flexispira rappini str. FH 9702248
prokMSA_id:27482 Helicobacter cinaedi strain ADN 0413 
prokMSA_id:29786 Flexispira rappini and intervening 
prokMSA_id:56169 Helicobacter cinaedi 
prokMSA_id:60772 Flexispira rappini 
2.28.5.1.1.10460 OTU 1 seq
prokMSA_id:11042 Helicobacter hepaticus str. Fox Hh-1 ATCC 51449
2.28.5.1.1.10430 OTU 17 seqs
prokMSA_id:11003 Helicobacter suis
prokMSA_id:11004 Helicobacter 'pig A2'
prokMSA_id:11005 Helicobacter 'pig B1'
prokMSA_id:11006 Helicobacter 'pig B6'
prokMSA_id:11007 Helicobacter 'pig D7'
prokMSA_id:11009 Helicobacter 'pig F8'
prokMSA_id:55918 Helicobacter heilmannii strain CM2 
prokMSA_id:64305 Helicobacter heilmannii strain RM2 
prokMSA_id:64307 Helicobacter heilmannii strain RM1 
prokMSA_id:64310 Helicobacter heilmannii strain P5 
prokMSA_id:64314 Helicobacter heilmannii strain MM1 
prokMSA_id:64316 Helicobacter heilmannii strain MM2 
prokMSA_id:64324 Helicobacter heilmannii strain HU4 
prokMSA_id:64328 Helicobacter heilmannii strain HU5 
prokMSA_id:71558 Helicobacter heilmannii strain P4 
prokMSA_id:72724 Helicobacter heilmannii strain CM1 
prokMSA_id:73122 Helicobacter heilmannii strain P1 
2.28.5.1.1.10448 OTU 8 seqs
prokMSA_id:10966 Helicobacter bizzozeronii CCUG 35045
prokMSA_id:10967 Helicobacter felis str. Dog-1
prokMSA_id:11026 Helicobacter salomonis str. Inkinen CCUG 37845
prokMSA_id:11027 Helicobacter felis str. 937-12
prokMSA_id:11028 Helicobacter felis str. 390-9
prokMSA_id:11032 Helicobacter felis str. Dog-2 Eaton 2301
prokMSA_id:11033 Helicobacter felis str. Dog-3 Eaton 1602
prokMSA_id:47191 Helicobacter bizzozeronii 
2.28.5.1.1.10520 OTU 1 seq
prokMSA_id:41542 Helicobacter sp. isolate 964
2.28.5.1.1.10518 OTU 1 seq
prokMSA_id:11080 Helicobacter nemestrinae str. T81213-NTB ATCC 49396
2.28.5.1.1.10548 OTU 12 seqs
prokMSA_id:11023 Helicobacter sp
prokMSA_id:11070 Helicobacter VA str. VA
prokMSA_id:17350 Helicobacter cinaedi strain CCUG 18818 
prokMSA_id:20816 Helicobacter cinaedi isolate 30327 
prokMSA_id:30026 Helicobacter cinaedi isolate 30365 
prokMSA_id:38896 Helicobacter sp. isolate 3028
prokMSA_id:39557 Helicobacter rappini W.Tee-Bat 
prokMSA_id:44759 Helicobacter cinaedi isolate 30314 
prokMSA_id:47656 Helicobacter sp. isolate 2634
prokMSA_id:49270 Helicobacter cinaedi isolate 31111 
prokMSA_id:70150 Helicobacter sp. GOSH 
prokMSA_id:71514 Helicobacter sp. isolate 384
2.28.5.1.1.10570 OTU 1 seq
prokMSA_id:41903 Helicobacter sp. MN-3 
2.28.5.1.1.10552 OTU 3 seqs
prokMSA_id:16388 Helicobacter winghamensis NLEP 98-202 
prokMSA_id:20336 Helicobacter winghamensis strain NLEP 97-1611 
prokMSA_id:60773 Helicobacter sp. J2103 
2.28.5.1.1.10541 OTU 1 seq
prokMSA_id:10984 str. clone koll6
2.28.5.1.1.10534 OTU 10 seqs
prokMSA_id:10957 Helicobacter pylori str. 26695 =rrnB
prokMSA_id:11017 Helicobacter pylori str. D01
prokMSA_id:11056 Helicobacter pylori str. MC238
prokMSA_id:36626 Helicobacter pylori 
prokMSA_id:55890 Helicobacter pylori strain Sal05 
prokMSA_id:56665 Helicobacter pylori strain Sal10 
prokMSA_id:61186 Helicobacter pylori isolate 181 complete 
prokMSA_id:68374 Helicobacter pylori strain 109 
prokMSA_id:68375 Helicobacter pylori strain 108 
prokMSA_id:75781 Helicobacter pylori strain 1200 
2.28.5.1.1.10536 OTU 1 seq
prokMSA_id:10980 Helicobacter bovis
2.28.5.1.1.10562 OTU 33 seqs
prokMSA_id:11022 Flexispira rappini str. H1353
prokMSA_id:11053 Helicobacter sp
prokMSA_id:11060 Helicobacter bilis str. Hb1 ATCC 51630
prokMSA_id:11062 Helicobacter canis NCTC 12739
prokMSA_id:11063 Helicobacter 'feline isolate'
prokMSA_id:11064 Helicobacter canis str. MIT 98-152
prokMSA_id:11068 Helicobacter bilis str. Hb2 ATCC 51631
prokMSA_id:11069 Flexispira CDC-H69 str. CDC-H69
prokMSA_id:17771 Helicobacter cf. pullorum strain W.Tee-Cro 
prokMSA_id:19959 Helicobacter canis 
prokMSA_id:20805 Helicobacter cinaedi strain CCUG 33887 
prokMSA_id:23629 Helicobacter sp. 'Flexispira taxon 8' strain ATCC 49317 
prokMSA_id:26344 Helicobacter sp. isolate 1199
prokMSA_id:26749 Helicobacter sp. MIT 98-5357 complete 
prokMSA_id:26909 Helicobacter sp. isolate 1058
prokMSA_id:28820 Helicobacter bilis 
prokMSA_id:28994 Helicobacter sp. 'Flexispira taxon 4' 
prokMSA_id:29701 Helicobacter rappini W.Tee-Yu 
prokMSA_id:29878 Helicobacter sp. 'hamster B' 
prokMSA_id:32695 Helicobacter sp. 'Flexispira taxon 8' 
prokMSA_id:32900 Helicobacter sp. MIT 95-234-6 
prokMSA_id:40721 Helicobacter rappini strain H 157 S 
prokMSA_id:47556 Helicobacter rappini strain H 95 S 
prokMSA_id:48498 Helicobacter sp. UNSW1.7sp 
prokMSA_id:49662 Helicobacter sp
prokMSA_id:49754 Helicobacter sp. strain MZ 640285
prokMSA_id:68999 Helicobacter sp. 'Flexispira taxon 2' 
prokMSA_id:70187 Helicobacter sp. UNSWMCSp1 
prokMSA_id:70293 Helicobacter sp. UNSW1.7col 
prokMSA_id:71120 Helicobacter rappini strain 2 SU 
prokMSA_id:72874 Helicobacter hepaticus 
prokMSA_id:74357 Helicobacter rappini strain 3 SU 
prokMSA_id:81166 Helicobacter sp. MIT 01-5529B 
2.28.5.1.1.10567 OTU 1 seq
prokMSA_id:10947 clone ACE-27
2.28.5.1.1.10616 OTU 1 seq
prokMSA_id:10978 str. BD5-13
2.28.5.1.1.10572 OTU 1 seq
prokMSA_id:10974 Helicobacter sp
2.28.5.1.1.10615 OTU 1 seq
prokMSA_id:10977 clone SRang2.3
2.28.5.1.1.10580 OTU 1 seq
prokMSA_id:37024 Helicobacter sp. 'Solnick 9A1-T71' 
2.28.5.1.1.10576 OTU 1 seq
prokMSA_id:11085 Helicobacter 'liver 3' str. liver 3
2.28.5.1.1.10602 OTU 1 seq
prokMSA_id:43302 Helicobacter sp. MN-1 
2.28.5.1.2 WLN.SUCCINOGENES_SUBGROUP 4 seqs
2.28.5.1.2.10519 OTU 2 seqs
prokMSA_id:26106 Wolinella succinogenes 
prokMSA_id:29152 Wolinella succinogenes 
2.28.5.1.2.10575 OTU 2 seqs
prokMSA_id:42495 Candidatus Wolinella africanus SA-5 
prokMSA_id:47305 Candidatus Wolinella africanus SA-7 AF297633
2.28.5.2 THIOVULUM_GROUP 157 seqs
2.28.5.2.1 PELE'S_VENTS_CLONES_SUBGROUP 19 seqs
2.28.5.2.1.10425 OTU 1 seq
prokMSA_id:81472 Sulfromonas thioautotrophicum strain:OK5
2.28.5.2.1.10472 OTU 1 seq
prokMSA_id:73836 epsilon VC1.2-cl26 
2.28.5.2.1.10478 OTU 1 seq
prokMSA_id:38197 epsilon VC1.2-cl51 
2.28.5.2.1.10504 OTU 1 seq
prokMSA_id:20884 epsilon clone 33-FL98B00 
2.28.5.2.1.10488 OTU 1 seq
prokMSA_id:57486 epsilon clone P. palm C 43
2.28.5.2.1.10543 OTU 6 seqs
prokMSA_id:11093 Pele's Vents clone PVB_63
prokMSA_id:11095 Pele's Vents clone PVB_55
prokMSA_id:11096 Pele's Vents clone PVB_15
prokMSA_id:11099 Pele's Vents clone PVB_12
prokMSA_id:11101 Pele's Vents clone PVB_10
prokMSA_id:11102 Pele's Vents clone PVB_7
2.28.5.2.1.10593 OTU 1 seq
prokMSA_id:43869 epsilon VC1.2-cl50 
2.28.5.2.1.10578 OTU 1 seq
prokMSA_id:36248 epsilon clone 33-FL98B99 
2.28.5.2.1.10600 OTU 1 seq
prokMSA_id:82461 clone KD1-140 
2.28.5.2.1.10588 OTU 1 seq
prokMSA_id:11097 clone PENDANT-19
2.28.5.2.1.10589 OTU 1 seq
prokMSA_id:11098 Thiovulum PENDANT-10
2.28.5.2.1.10577 OTU 1 seq
prokMSA_id:34712 epsilon clone 33-FL99B00 
2.28.5.2.1.10596 OTU 1 seq
prokMSA_id:48010 epsilon Arctic96B-13 
2.28.5.2.1.10622 OTU 1 seq
prokMSA_id:33082 epsilon MERTZ_2CM_162 
2.28.5.2.2 TMS.DENITRIFICANS_SUBGROUP 18 seqs
2.28.5.2.2.10389 OTU 1 seq
prokMSA_id:29761 clone Car2a 
2.28.5.2.2.10392 OTU 1 seq
prokMSA_id:45923 epsilon clone 33-PA8B00 
2.28.5.2.2.10459 OTU 1 seq
prokMSA_id:11113 str. JTB146
2.28.5.2.2.10466 OTU 1 seq
prokMSA_id:38258 ODPB-B9 
2.28.5.2.2.10458 OTU 1 seq
prokMSA_id:11112 clone SRang1.23
2.28.5.2.2.10445 OTU 1 seq
prokMSA_id:11103 Pele's Vents clone PVB_73
2.28.5.2.2.10449 OTU 1 seq
prokMSA_id:11104 str. NKB11
2.28.5.2.2.10452 OTU 1 seq
prokMSA_id:11109 clone Phenol-1
2.28.5.2.2.10501 OTU 1 seq
prokMSA_id:36811 epsilon clone 33-PA19B00 
2.28.5.2.2.10495 OTU 1 seq
prokMSA_id:11111 clone SRang1.25
2.28.5.2.2.10491 OTU 1 seq
prokMSA_id:37490 epsilon clone 33-PA11B00 
2.28.5.2.2.10493 OTU 1 seq
prokMSA_id:11108 Thiomicrospira denitrificans DSM 1251
2.28.5.2.2.10565 OTU 1 seq
prokMSA_id:51546 epsilon clone 33-PA46B00 
2.28.5.2.2.10528 OTU 2 seqs
prokMSA_id:31948 epsilon clone 33-FL14B98 
prokMSA_id:38225 epsilon clone 33-PA75B98 
2.28.5.2.2.10599 OTU 1 seq
prokMSA_id:32993 epsilon clone 33-FL51B00 
2.28.5.2.2.10595 OTU 1 seq
prokMSA_id:40382 ODPB-B3 
2.28.5.2.2.10591 OTU 1 seq
prokMSA_id:19590 epsilon VC1.2-cl49 
2.28.5.2.4 ALVINELLA_POMPEJANA_SYMBIONTS_SUBGROUP 120 seqs
2.28.5.2.4.10416 OTU 6 seqs
prokMSA_id:11151 VC2.1 Bac8 complete AF068789
prokMSA_id:11152 VC2.1 Bac17 complete 
prokMSA_id:11153 VC2.1 Bac19 complete 
prokMSA_id:11154 VC2.1 Bac20 complete 
prokMSA_id:11155 VC2.1 Bac30 complete AF068804
prokMSA_id:11156 VC2.1 Bac12 complete AF068812
2.28.5.2.4.10423 OTU 1 seq
prokMSA_id:77777 epsilon clone Hyd01-01
2.28.5.2.4.10411 OTU 1 seq
prokMSA_id:77641 epsilon clone:Rs-P71
2.28.5.2.4.10408 OTU 1 seq
prokMSA_id:34515 epsilon VC1.2-cl69 
2.28.5.2.4.10405 OTU 1 seq
prokMSA_id:67791 isolate a1b030 
2.28.5.2.4.10384 OTU 1 seq
prokMSA_id:34431 epsilon VC1.2-cl06 
2.28.5.2.4.10404 OTU 3 seqs
prokMSA_id:22254 epsilon clone 33-FL71B99 
prokMSA_id:30424 epsilon clone 33-PA111B99 
prokMSA_id:48476 epsilon clone 33-FL127B99 
2.28.5.2.4.10427 OTU 3 seqs
prokMSA_id:61855 epsilon clone R76-B151 
prokMSA_id:61872 epsilon clone R103-B43 
prokMSA_id:61874 epsilon clone R103-B37 
2.28.5.2.4.10438 OTU 6 seqs
prokMSA_id:11137 clone BPC056
prokMSA_id:11138 clone GCA014
prokMSA_id:11143 str. BD7-6
prokMSA_id:61858 epsilon clone R76-B78 
prokMSA_id:61878 epsilon clone R103-B15 
prokMSA_id:82567 Epsilon 49MY 
2.28.5.2.4.10453 OTU 1 seq
prokMSA_id:61866 epsilon clone R76-B30 
2.28.5.2.4.10435 OTU 1 seq
prokMSA_id:25670 mRNA clone sipK94
2.28.5.2.4.10457 OTU 1 seq
prokMSA_id:79565 Dex60-82 strain Dex60-82
2.28.5.2.4.10432 OTU 9 seqs
prokMSA_id:61857 epsilon clone R76-B129 
prokMSA_id:61859 epsilon clone R76-B76 
prokMSA_id:61860 epsilon clone R76-B67 
prokMSA_id:61862 epsilon clone R76-B57 
prokMSA_id:61863 epsilon clone R76-B51 
prokMSA_id:61864 epsilon clone R76-B25 
prokMSA_id:61865 epsilon clone R76-B47 
prokMSA_id:61868 epsilon clone R76-B29 
prokMSA_id:61871 epsilon clone R103-B46 
2.28.5.2.4.10469 OTU 1 seq
prokMSA_id:11120 symbiont of Alvinella pompejana
2.28.5.2.4.10473 OTU 1 seq
prokMSA_id:11127 symbiont of Rimicaris exoculata
2.28.5.2.4.10471 OTU 1 seq
prokMSA_id:11124 symbiont of Alvinella pompejana
2.28.5.2.4.10470 OTU 1 seq
prokMSA_id:11121 symbiont of Alvinella pompejana
2.28.5.2.4.10426 OTU 1 seq
prokMSA_id:79345 BHI60-53 strain BHI60-53
2.28.5.2.4.10440 OTU 1 seq
prokMSA_id:21582 epsilon clone 33-PA26B98 
2.28.5.2.4.10482 OTU 1 seq
prokMSA_id:57475 epsilon clone P. palm C 140
2.28.5.2.4.10475 OTU 1 seq
prokMSA_id:67782 isolate C1_B006 
2.28.5.2.4.10492 OTU 1 seq
prokMSA_id:51291 Epsilon Am-H 
2.28.5.2.4.10477 OTU 1 seq
prokMSA_id:47967 S17sBac5 complete 
2.28.5.2.4.10481 OTU 1 seq
prokMSA_id:57474 epsilon clone P. palm C/A 13
2.28.5.2.4.10480 OTU 1 seq
prokMSA_id:57473 epsilon clone P. palm C 84
2.28.5.2.4.10490 OTU 1 seq
prokMSA_id:54845 S17sBac21 complete 
2.28.5.2.4.10517 OTU 2 seqs
prokMSA_id:35810 S17sBac14 complete 
prokMSA_id:36523 S17sBac4 complete 
2.28.5.2.4.10521 OTU 1 seq
prokMSA_id:18072 epsilon clone 33-PA14B00 
2.28.5.2.4.10489 OTU 4 seqs
prokMSA_id:17634 epsilon clone 33-FL69B98 
prokMSA_id:46918 epsilon clone 33-FL76B98 
prokMSA_id:48014 epsilon clone 33-FL37B99 
prokMSA_id:53082 S17sBac16 complete AF299121
2.28.5.2.4.10505 OTU 1 seq
prokMSA_id:11129 VC2.1 Bac1 complete 
2.28.5.2.4.10512 OTU 1 seq
prokMSA_id:33429 epsilon clone 33-PA55B00 
2.28.5.2.4.10502 OTU 1 seq
prokMSA_id:16659 epsilon clone 33-PA73B98 
2.28.5.2.4.10513 OTU 1 seq
prokMSA_id:11136 VC2.1 Bac31 complete 
2.28.5.2.4.10515 OTU 3 seqs
prokMSA_id:17403 S17sBac3 complete 
prokMSA_id:40818 S17sBac34 complete 
prokMSA_id:42752 S17sBac8 complete 
2.28.5.2.4.10516 OTU 1 seq
prokMSA_id:46541 epsilon clone 33-PA72B98 
2.28.5.2.4.10497 OTU 1 seq
prokMSA_id:83596 epsilon clone PD-UASB-2 
2.28.5.2.4.10545 OTU 9 seqs
prokMSA_id:23967 clone Car29rb 
prokMSA_id:30408 clone CarB13a 
prokMSA_id:33016 n12r AF194187
prokMSA_id:34512 epsilon n22 
prokMSA_id:35085 clone Car59rc 
prokMSA_id:36709 clone Car73ra 
prokMSA_id:49247 epsilon n29r AF194212
prokMSA_id:50199 epsilon n18r AF194210
prokMSA_id:84016 epsilon clone DBBB-68 
2.28.5.2.4.10530 OTU 29 seqs
prokMSA_id:11140 str. BD1-4
prokMSA_id:11141 str. BD2-1
prokMSA_id:11145 str. NKB8
prokMSA_id:11146 str. NKB9
prokMSA_id:11148 str. NKB12
prokMSA_id:11149 str. JTB315
prokMSA_id:55437 epsilon clone P. palm C/A 55
prokMSA_id:57471 epsilon clone P. palm C/A 113
prokMSA_id:57472 epsilon clone P. palm C/A 114
prokMSA_id:61861 epsilon clone R76-B61 
prokMSA_id:61867 epsilon clone R76-A19 
prokMSA_id:61869 epsilon clone R103-B76 
prokMSA_id:61875 epsilon clone R103-B22 
prokMSA_id:61876 epsilon clone R103-B19 
prokMSA_id:67787 isolate CS_B015 
prokMSA_id:67790 isolate a2b043 AF420347
prokMSA_id:67793 isolate a1b001 
prokMSA_id:67794 isolate a1b024 AF420343
prokMSA_id:73787 isolate C1_B011 
prokMSA_id:79175 BHI80-16 strain BHI80-16
prokMSA_id:79240 BHI60-14 strain BHI60-14
prokMSA_id:79418 BHI60-9 strain BHI60-9
prokMSA_id:79474 Dex80-5 strain Dex80-5 AJ431225
prokMSA_id:79591 sequences clone: IndB1-30
prokMSA_id:79598 Dex80-27 strain Dex80-27
prokMSA_id:82535 clone B01R002 
prokMSA_id:83351 clone B01R006 
prokMSA_id:83924 clone B03P029 
prokMSA_id:96301 epsilon clone AT-pp46 AY225621
2.28.5.2.4.10556 OTU 1 seq
prokMSA_id:16957 Epsilon 18.2 
2.28.5.2.4.10526 OTU 1 seq
prokMSA_id:61877 epsilon clone R103-B18 
2.28.5.2.4.10571 OTU 1 seq
prokMSA_id:11142 str. BD2-5
2.28.5.2.4.10569 OTU 1 seq
prokMSA_id:41233 epsilon VC1.2-cl21 
2.28.5.2.4.10547 OTU 1 seq
prokMSA_id:20755 epsilon VC1.2-cl57 
2.28.5.2.4.10573 OTU 1 seq
prokMSA_id:11150 symbiont of Alvinella pompejana
2.28.5.2.4.10620 OTU 1 seq
prokMSA_id:57470 epsilon clone P. palm C/A 18
2.28.5.2.4.10584 OTU 1 seq
prokMSA_id:70391 epsilon VC1.2-cl42 
2.28.5.2.4.10618 OTU 1 seq
prokMSA_id:29260 clone Car13a 
2.28.5.2.4.10614 OTU 1 seq
prokMSA_id:79600 BHI80-49 strain BHI80-49
2.28.5.2.4.10612 OTU 1 seq
prokMSA_id:57469 epsilon clone P. palm C/A 64
2.28.5.2.4.10611 OTU 1 seq
prokMSA_id:57468 epsilon clone P. palm C/A 220
2.28.5.2.4.10610 OTU 1 seq
prokMSA_id:57467 epsilon clone P. palm C/A 89
2.28.5.2.4.10590 OTU 1 seq
prokMSA_id:78387 epsilon clone:Rs-H40
2.28.5.2.4.10606 OTU 1 seq
prokMSA_id:40838 S17sBac25 complete 
2.28.5.2.4.10598 OTU 1 seq
prokMSA_id:33791 epsilon clone 33-PA64B98 
2.28.5.2.4.10582 OTU 1 seq
prokMSA_id:20059 Top-147 clone Top-147
2.28.5.2.4.10621 OTU 1 seq
prokMSA_id:34281 epsilon clone 33-PA3B00 
2.28.5.3 CAMPYLOBACTER_GROUP 262 seqs
2.28.5.3.1 AOB.CRYAEROPHILUS_SUBGROUP 74 seqs
2.28.5.3.1.10402 OTU 1 seq
prokMSA_id:11182 str. JTB129
2.28.5.3.1.10419 OTU 1 seq
prokMSA_id:60384 Arcobacter sp. LA31B 
2.28.5.3.1.10388 OTU 1 seq
prokMSA_id:40453 epsilon clone 33-FL74B00 
2.28.5.3.1.10403 OTU 1 seq
prokMSA_id:51261 epsilon clone 33-FL70B00 
2.28.5.3.1.10396 OTU 1 seq
prokMSA_id:11177 Arcobacter PENDANT-6
2.28.5.3.1.10382 OTU 2 seqs
prokMSA_id:11162 Arcobacter sp. str. Solar Lake
prokMSA_id:70443 Arcobacter sp. L42994
2.28.5.3.1.10401 OTU 1 seq
prokMSA_id:22128 Oilfield 'FWKO B' 
2.28.5.3.1.10400 OTU 1 seq
prokMSA_id:11180 str. BD1-29
2.28.5.3.1.10397 OTU 2 seqs
prokMSA_id:24487 epsilon 1053 AB030593
prokMSA_id:35924 epsilon 1006 
2.28.5.3.1.10387 OTU 1 seq
prokMSA_id:11168 clone T95
2.28.5.3.1.10383 OTU 1 seq
prokMSA_id:11163 str. 45.e
2.28.5.3.1.10410 OTU 1 seq
prokMSA_id:70950 Candidatus Arcobacter sulfidicus 
2.28.5.3.1.10394 OTU 1 seq
prokMSA_id:11170 clone T18
2.28.5.3.1.10422 OTU 2 seqs
prokMSA_id:50675 epsilon clone CD11H4 
prokMSA_id:51742 epsilon clone CD11H2 
2.28.5.3.1.10446 OTU 4 seqs
prokMSA_id:75446 epsilon clone ULIB-70 
prokMSA_id:76194 epsilon clone ALIB-70 
prokMSA_id:83509 epsilon clone UBBB-42 
prokMSA_id:84374 epsilon clone ABBB-16 
2.28.5.3.1.10450 OTU 1 seq
prokMSA_id:45228 Arcobacter sp. clone B4b1
2.28.5.3.1.10465 OTU 1 seq
prokMSA_id:35552 epsilon clone 33-FL34B00 
2.28.5.3.1.10433 OTU 10 seqs
prokMSA_id:19566 CHA3-127 clone CHA3-127 AJ132726
prokMSA_id:20461 CHA3-437 clone CHA3-437 AJ132728
prokMSA_id:25911 CHA3-66 clone CHA3-66 AJ132727
prokMSA_id:27126 CHA3-124 clone CHA3-124
prokMSA_id:33261 CHA3-102 clone CHA3-102 AJ132731
prokMSA_id:42967 CHA3-101 clone CHA3-101
prokMSA_id:48263 CHA3-30 clone CHA3-30
prokMSA_id:49402 CHA3-4 clone CHA3-4
prokMSA_id:72967 CHA3-217 clone CHA3-217
prokMSA_id:74747 CHA3-215 clone CHA3-215
2.28.5.3.1.10461 OTU 2 seqs
prokMSA_id:11183 str. JTB360
prokMSA_id:79301 sequences clone: IndB2-33
2.28.5.3.1.10514 OTU 2 seqs
prokMSA_id:21241 epsilon clone CD4B3 
prokMSA_id:23096 epsilon clone CD5G4 
2.28.5.3.1.10474 OTU 1 seq
prokMSA_id:11181 str. 77.d
2.28.5.3.1.10499 OTU 1 seq
prokMSA_id:16393 epsilon clone 33-FL76B00 
2.28.5.3.1.10503 OTU 2 seqs
prokMSA_id:11179 Arcobacter nitrofigilis CCUG 15893 . L14627
prokMSA_id:72479 Marine MSC2 
2.28.5.3.1.10498 OTU 1 seq
prokMSA_id:32175 Arcobacter sp. clone GOBB3-CL322 
2.28.5.3.1.10496 OTU 1 seq
prokMSA_id:51975 Arcobacter sp. clone D1a1
2.28.5.3.1.10555 OTU 1 seq
prokMSA_id:25916 Arcobacter kps57f 
2.28.5.3.1.10557 OTU 1 seq
prokMSA_id:38114 epsilon clone 33-PA74B00 
2.28.5.3.1.10558 OTU 1 seq
prokMSA_id:48714 epsilon MERTZ_0CM_34 
2.28.5.3.1.10560 OTU 1 seq
prokMSA_id:49553 epsilon clone 33-FL58B00 
2.28.5.3.1.10561 OTU 1 seq
prokMSA_id:49628 epsilon KTc1160 
2.28.5.3.1.10564 OTU 1 seq
prokMSA_id:44326 epsilon clone 33-PA28B00 
2.28.5.3.1.10529 OTU 6 seqs
prokMSA_id:17190 epsilon 1065 
prokMSA_id:30662 epsilon 1003 
prokMSA_id:35496 epsilon 1032 AB030595
prokMSA_id:36312 epsilon 1067 AB030596
prokMSA_id:48373 epsilon 1057 
prokMSA_id:50542 epsilon 1021 AB030594
2.28.5.3.1.10527 OTU 4 seqs
prokMSA_id:11158 Arcobacter butzleri CCUG 10373
prokMSA_id:11159 Arcobacter butzleri str. Pig 61. U34386
prokMSA_id:11160 Arcobacter butzleri str. Pig 15. U34388
prokMSA_id:36386 Arcobacter butzleri 
2.28.5.3.1.10538 OTU 5 seqs
prokMSA_id:11161 Arcobacter skirrowii str. 449/80 CCUG 10374 . L14625
prokMSA_id:11165 Arcobacter cryaerophilus CCUG 17801
prokMSA_id:11169 clone T24
prokMSA_id:11171 clone T55
prokMSA_id:11178 Arcobacter cryaerophilus str. Pig 69. U34387
2.28.5.3.1.10554 OTU 1 seq
prokMSA_id:28982 epsilon clone 33-PA6B00 
2.28.5.3.1.10523 OTU 1 seq
prokMSA_id:61870 epsilon clone R103-B70 
2.28.5.3.1.10603 OTU 1 seq
prokMSA_id:11173 clone T40
2.28.5.3.1.10583 OTU 1 seq
prokMSA_id:21381 clone Car12fa 
2.28.5.3.1.10608 OTU 1 seq
prokMSA_id:29396 epsilon clone 33-FL88B00 
2.28.5.3.1.10601 OTU 1 seq
prokMSA_id:32899 epsilon kps81f 
2.28.5.3.1.10617 OTU 1 seq
prokMSA_id:30435 epsilon MERTZ_0CM_367 
2.28.5.3.1.10594 OTU 1 seq
prokMSA_id:17990 epsilon BioIuz K34 
2.28.5.3.1.10581 OTU 1 seq
prokMSA_id:11167 clone T81
2.28.5.3.1.10604 OTU 1 seq
prokMSA_id:11175 unnamed organism
2.28.5.3.2 SFS.BARNESII_SUBGROUP 71 seqs
2.28.5.3.2.10414 OTU 1 seq
prokMSA_id:82067 clone KD2-34 
2.28.5.3.2.10391 OTU 1 seq
prokMSA_id:48323 epsilon VC1.2-cl07 
2.28.5.3.2.10407 OTU 1 seq
prokMSA_id:67795 isolate a1b010 
2.28.5.3.2.10421 OTU 1 seq
prokMSA_id:77916 candidate division OP11 clone:Rs-M28
2.28.5.3.2.10424 OTU 4 seqs
prokMSA_id:17620 epsilon VC1.2-cl02 
prokMSA_id:23025 epsilon VC1.2-cl18 
prokMSA_id:37981 epsilon VC1.2-cl04 
prokMSA_id:42904 epsilon VC1.2-cl13 
2.28.5.3.2.10393 OTU 1 seq
prokMSA_id:24279 DCE10 
2.28.5.3.2.10455 OTU 1 seq
prokMSA_id:86409 clone B02R018 
2.28.5.3.2.10439 OTU 5 seqs
prokMSA_id:11186 Dehalospirillum multivorans str. K
prokMSA_id:11189 Sulfurospirillum arsenophilum str. MIT-13 ATCC 700056
prokMSA_id:16474 Enrichment culture JMP-9 
prokMSA_id:25462 Sulfurospirillum halorespirans strain PCE-M2 
prokMSA_id:40099 epsilon 1014 
2.28.5.3.2.10464 OTU 2 seqs
prokMSA_id:59205 Campylobacter sp. NO3A 
prokMSA_id:59210 Campylobacter sp. NO2B 
2.28.5.3.2.10447 OTU 12 seqs
prokMSA_id:11087 Flexispira rappini str. DBS59. L12765
prokMSA_id:11185 "Geospirillum barnesii"
prokMSA_id:11187 Sulfurospirillum deleyianum str. 5175 ATCC 51133
prokMSA_id:11191 Campylobacter sp. CCUG 13942. L14632
prokMSA_id:39964 Helicobacter sp. 'MIT 99-5659-3' AF292380
prokMSA_id:57466 epsilon clone P. palm C/A 26 AJ441213
prokMSA_id:66096 epsilon clone:KB21 AB074956
prokMSA_id:66190 clone IA-22
prokMSA_id:77541 Sulfurospirillum sp. EK7 strain EK7
prokMSA_id:79697 Sulfurospirillum sp. JPD-1 
prokMSA_id:85047 epsilon clone LKC2.127-7 AY208812
prokMSA_id:98867 epsilon clone T2-PP12-593 AJ575957
2.28.5.3.2.10487 OTU 1 seq
prokMSA_id:11195 Sulfurospirillum ACE-24
2.28.5.3.2.10500 OTU 1 seq
prokMSA_id:11193 Sulfurospirillum arcachonense str. F1F6 DSMZ 9755
2.28.5.3.2.10485 OTU 1 seq
prokMSA_id:11190 Sulfurospirillum barnesii str. SES-3
2.28.5.3.2.10509 OTU 1 seq
prokMSA_id:62490 Sulfurospirillum sp. clone LA4-B52N 
2.28.5.3.2.10476 OTU 1 seq
prokMSA_id:11188 str. BD1-5
2.28.5.3.2.10486 OTU 1 seq
prokMSA_id:11194 Sulfurospirillum BURTON-15
2.28.5.3.2.10563 OTU 1 seq
prokMSA_id:11192 Campylobacter sp. DSM806 
2.28.5.3.2.10542 OTU 2 seqs
prokMSA_id:19883 Sulfurospirillum sp. Am-N 
prokMSA_id:22148 Sulfurospirillum sp. 18.1 
2.28.5.3.2.10566 OTU 1 seq
prokMSA_id:22264 CS_B020 
2.28.5.3.2.10550 OTU 25 seqs
prokMSA_id:20917 Sulfuricurvum kujiense AB053951
prokMSA_id:21738 epsilon 1043 
prokMSA_id:22082 epsilon 1028 
prokMSA_id:27290 mRNA clone sipK119
prokMSA_id:27914 epsilon 1054 
prokMSA_id:34308 epsilon 1005 
prokMSA_id:34916 epsilon 1033 
prokMSA_id:36148 epsilon 1008 AB030604
prokMSA_id:37769 epsilon 1049 
prokMSA_id:40252 Sulfuricurvum kujiense strain:YK-2 AB080643
prokMSA_id:41311 Sulfuricurvum kujiense strain:YK-4 AB080645
prokMSA_id:45975 epsilon 1023 AB030610
prokMSA_id:47752 epsilon 1011 AB030607
prokMSA_id:48041 epsilon 1047 
prokMSA_id:49390 Sulfuricurvum kujiense strain:YK-3
prokMSA_id:51819 epsilon 1061 AB030609
prokMSA_id:62394 epsilon clone FTLM3 AF529123
prokMSA_id:62395 epsilon clone FTLM173 AF529118
prokMSA_id:62416 epsilon clone FTL212 
prokMSA_id:66097 epsilon clone:KB2 AB074955
prokMSA_id:66098 epsilon clone:KB8 AB074954
prokMSA_id:85203 epsilon clone LKC2.57-8 
prokMSA_id:93473 epsilon clone LKC1.58_1 AY191477
prokMSA_id:93579 epsilon clone LKC1.57_4 AY191472
prokMSA_id:93636 epsilon clone LKC1.57_2 AY191470
2.28.5.3.2.10535 OTU 1 seq
prokMSA_id:30295 clone RA9C8 
2.28.5.3.2.10531 OTU 1 seq
prokMSA_id:83453 clone B02R017 
2.28.5.3.2.10607 OTU 1 seq
prokMSA_id:73328 epsilon VC1.2-cl31 
2.28.5.3.2.10586 OTU 4 seqs
prokMSA_id:28947 epsilon 1058 
prokMSA_id:44032 epsilon 1018 
prokMSA_id:66170 clone IIIA-8
prokMSA_id:66178 clone IIB-25
2.28.5.3.4 CAM.FETUS_SUBGROUP 117 seqs
2.28.5.3.4.10390 OTU 1 seq
prokMSA_id:67848 epsilon clone 44a-B1-1 
2.28.5.3.4.10420 OTU 4 seqs
prokMSA_id:11210 Campylobacter hominis str. HS-A. AF062490
prokMSA_id:11211 Campylobacter hominis str. HS-B
prokMSA_id:11212 Campylobacter hominis str. HS-C. AF062492
prokMSA_id:36254 Campylobacter hominis strain NCTC 13146
2.28.5.3.4.10417 OTU 1 seq
prokMSA_id:82339 clone KM61 
2.28.5.3.4.10467 OTU 1 seq
prokMSA_id:66100 epsilon clone:KB16
2.28.5.3.4.10463 OTU 10 seqs
prokMSA_id:11220 Campylobacter fetus ATCC 27374 . L04314
prokMSA_id:11222 Campylobacter fetus subsp. venerealis ATCC 19438 . L14633
prokMSA_id:11226 Campylobacter fetus ATCC 27374 . M65012
prokMSA_id:11242 Campylobacter fetus subsp. venerealis ATCC 19438 . M65011
prokMSA_id:20808 Campylobacter fetus subsp. fetus isolate 002\827 AJ306568
prokMSA_id:52782 Campylobacter fetus subsp. fetus isolate 102\804
prokMSA_id:57387 Campylobacter fetus subsp. fetus strain H00/415 AF550619
prokMSA_id:57388 Campylobacter fetus subsp. fetus strain F-107/4132 
prokMSA_id:68798 Campylobacter fetus subsp. venerealis complete 
prokMSA_id:71368 Campylobacter fetus MGH 97-3574 
2.28.5.3.4.10434 OTU 4 seqs
prokMSA_id:11209 Campylobacter gracilis str. WAL 6989 ATCC 33236
prokMSA_id:56165 Campylobacter gracilis strain LMG 7616 AF550656
prokMSA_id:57351 Campylobacter gracilis strain CCUG 13143 
prokMSA_id:57352 Campylobacter gracilis strain CCUG 27721 
2.28.5.3.4.10456 OTU 12 seqs
prokMSA_id:11213 Campylobacter sputorum subsp. bubulus ATCC 33491. L04319
prokMSA_id:11221 Campylobacter showae CCUG 11641. L06975
prokMSA_id:56203 Campylobacter mucosalis strain ATCC 43265 
prokMSA_id:57347 Campylobacter mucosalis strain ATCC 49353 
prokMSA_id:57348 Campylobacter mucosalis strain ATCC 49354 
prokMSA_id:57349 Campylobacter mucosalis strain ATCC 49352 
prokMSA_id:57350 Campylobacter rectus strain LMG 7611 
prokMSA_id:57354 Campylobacter curvus strain LMG 13936 AF550652
prokMSA_id:57355 Campylobacter concisus strain LMG 13937 
prokMSA_id:57356 Campylobacter concisus strain LMG 7545 
prokMSA_id:57357 Campylobacter curvus strain LMG 11127 
prokMSA_id:57358 Campylobacter curvus strain LMG 11034 AF550650
2.28.5.3.4.10508 OTU 1 seq
prokMSA_id:32546 Campylobacter sp. oral clone BB120 
2.28.5.3.4.10507 OTU 1 seq
prokMSA_id:78064 epsilon clone:Rs-M59
2.28.5.3.4.10494 OTU 1 seq
prokMSA_id:69947 Campylobacter faecalis strain 1433
2.28.5.3.4.10484 OTU 5 seqs
prokMSA_id:11247 Campylobacter helveticus NCTC 12470 . U03022
prokMSA_id:57359 Campylobacter helveticus strain CCUG 34016 
prokMSA_id:57360 Campylobacter helveticus strain CCUG 34016 
prokMSA_id:57361 Campylobacter helveticus strain CCUG 30563 
prokMSA_id:57363 Campylobacter helveticus strain LMG 12639 
2.28.5.3.4.10540 OTU 1 seq
prokMSA_id:57353 Campylobacter showae strain LMG 12636 
2.28.5.3.4.10546 OTU 35 seqs
prokMSA_id:11214 Campylobacter jejuni subsp. jejuni str. TGH 9011 ATCC 43431
prokMSA_id:11219 Campylobacter sp. NCTC 13006
prokMSA_id:11243 Campylobacter coli str. VC80; 1407 ATCC 33559 . M59073
prokMSA_id:11244 Campylobacter lari str. VC187; WRI 3034/77 CCUG 23947
prokMSA_id:11249 Campylobacter coli str. 1407 CCUG 11283 . L04312
prokMSA_id:11253 Campylobacter coli str. RMIT32A CCUG 33450 . L19738
prokMSA_id:11256 Campylobacter jejuni subsp. jejuni ATCC 33560 . M59298
prokMSA_id:11257 Campylobacter jejuni subsp. jejuni CCUG 11284 . L04315
prokMSA_id:11258 Campylobacter jejuni subsp. doylei str. SSI 5384-98
prokMSA_id:49562 Campylobacter jejuni complete genome NC_002163
prokMSA_id:54599 Campylobacter lari genes ITS region and 23S and complete str
prokMSA_id:55836 Campylobacter jejuni strain H99/240 
prokMSA_id:57373 Campylobacter lari strain LMG 14338 
prokMSA_id:57374 Campylobacter jejuni strain B99/206 
prokMSA_id:57375 Campylobacter lari strain LMG 7607 
prokMSA_id:57376 Campylobacter jejuni strain B99/224 
prokMSA_id:57377 Campylobacter jejuni strain LMG 9243 
prokMSA_id:57378 Campylobacter jejuni strain LMG 9217 AF550626
prokMSA_id:57379 Campylobacter coli strain B99/131 
prokMSA_id:57380 Campylobacter coli strain H99/155 AF550624
prokMSA_id:57381 Campylobacter coli strain H99/119 AF550623
prokMSA_id:57382 Campylobacter coli strain LMG 15884 
prokMSA_id:57383 Campylobacter coli strain LMG 15883 
prokMSA_id:57384 Campylobacter coli strain LMG 9220 AF550620
prokMSA_id:63933 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genom
prokMSA_id:66978 Campylobacter coli strain 98/C053/12 AF372096
prokMSA_id:66979 Campylobacter coli strain 98/C053/11 AF372095
prokMSA_id:66980 Campylobacter coli strain 98/C053/1 AF372093
prokMSA_id:66981 Campylobacter coli strain 98/C053/2 AF372094
prokMSA_id:66982 Campylobacter jejuni strain 98/E599/10 AF393203
prokMSA_id:66983 Campylobacter jejuni strain 98/E600/5 AF393202
prokMSA_id:66984 Campylobacter jejuni strain WH11 
prokMSA_id:66985 Campylobacter coli strain LMG 6440 AF372092
prokMSA_id:66989 Campylobacter jejuni strain NCTC 11351 
prokMSA_id:74490 Campylobacter lari strain LMG 11760 AF550633
2.28.5.3.4.10525 OTU 4 seqs
prokMSA_id:11227 Campylobacter sputorum subsp. sputorum str. S17 ATCC 35980
prokMSA_id:56624 Campylobacter sputorum strain LMG 11761 
prokMSA_id:57369 Campylobacter sputorum strain CSP-1 
prokMSA_id:57371 Campylobacter sputorum strain LMG 10388 
2.28.5.3.4.10553 OTU 19 seqs
prokMSA_id:11204 Campylobacter lanienae str. UB 993
prokMSA_id:11205 Campylobacter lanienae NCTC 13004
prokMSA_id:11233 Campylobacter hyointestinalis subsp. lawsonii CCUG 27631. AF
prokMSA_id:11234 Campylobacter hyointestinalis subsp. lawsonii str. CHY5
prokMSA_id:11235 Campylobacter hyointestinalis subsp. lawsonii str. CHY6
prokMSA_id:11236 Campylobacter hyointestinalis subsp. lawsonii str. CHY7
prokMSA_id:11237 Campylobacter hyointestinalis subsp. lawsonii str. CHY8
prokMSA_id:11238 Campylobacter hyointestinalis subsp. hyointestinalis str. SV
prokMSA_id:11239 Campylobacter cf. lanienae UB 992 str. UB 992. AF043422
prokMSA_id:11240 Campylobacter cf. lanienae UB 994 str. UB 994. AF043424
prokMSA_id:32509 equine intestinal sp. MW08 clone MW08 AJ408195
prokMSA_id:49620 clone p-2602-9F5 AF371867
prokMSA_id:53197 Campylobacter hyointestinalis subsp. lawsonii strain CHY4 an
prokMSA_id:56461 Campylobacter lanienae 
prokMSA_id:57346 Campylobacter lanienae strain S-K FAVW 
prokMSA_id:64363 Campylobacter lanienae 
prokMSA_id:64364 Campylobacter lanienae 
prokMSA_id:75078 Campylobacter lanienae isolate G718b 
prokMSA_id:86812 Campylobacter lanienae AY288304
2.28.5.3.4.10532 OTU 7 seqs
prokMSA_id:11200 Campylobacter hyointestinalis subsp. hyointestinalis str. 04
prokMSA_id:11201 Campylobacter hyointestinalis subsp. hyointestinalis str. 09
prokMSA_id:11202 Campylobacter hyointestinalis subsp. hyointestinalis NCTC 11
prokMSA_id:11203 Campylobacter hyointestinalis subsp. hyointestinalis str. SV
prokMSA_id:64355 Campylobacter hyointestinalis strain H00/108 
prokMSA_id:69901 Campylobacter fetus MGH 97-2126 
prokMSA_id:70687 Campylobacter hyointestinalis 
2.28.5.3.4.10549 OTU 8 seqs
prokMSA_id:55374 Campylobacter upsaliensis strain G1104 
prokMSA_id:57362 Campylobacter upsaliensis strain L 461 
prokMSA_id:57364 Campylobacter upsaliensis strain H53 E/ccda 
prokMSA_id:57365 Campylobacter upsaliensis strain H29 
prokMSA_id:57367 Campylobacter upsaliensis strain H37 E/1 
prokMSA_id:57368 Campylobacter upsaliensis strain LMG 8851 
prokMSA_id:60770 Campylobacter upsaliensis strain LMG 8850 
prokMSA_id:70846 Campylobacter upsaliensis strain WH6 
2.28.5.3.4.10597 OTU 1 seq
prokMSA_id:28244 epsilon 1068 
2.28.5.3.4.10613 OTU 1 seq
prokMSA_id:57366 Campylobacter upsaliensis strain LMG 8853 
2.28.5.4 ENVIRONMENTAL_CLONE_A21N_GROUP 1 seq
2.28.5.4.10592 OTU 1 seq
prokMSA_id:34401 clone GIF10 
2.28.6 UNCULTURED_MAGNETOTACTIC_CLONES 27 seqs
2.28.6.1005 OTU 1 seq
prokMSA_id:11284 clone CS408
2.28.6.1008 OTU 1 seq
prokMSA_id:11285 clone CS105
2.28.6.1011 OTU 1 seq
prokMSA_id:11287 clone MP17
2.28.6.1009 OTU 1 seq
prokMSA_id:11286 Pele's Vents clone PVB_13
2.28.6.317 OTU 1 seq
prokMSA_id:81623 clone KD8-87 
2.28.6.338 OTU 1 seq
prokMSA_id:27505 clone:TYM--20 
2.28.6.507 OTU 1 seq
prokMSA_id:18643 Red Sea KT-2K34 
2.28.6.535 OTU 2 seqs
prokMSA_id:11280 str. rj516
prokMSA_id:11283 str. rj12
2.28.6.538 OTU 1 seq
prokMSA_id:28900 delta MERTZ_2CM_26 
2.28.6.575 OTU 3 seqs
prokMSA_id:11279 str. rj520
prokMSA_id:11281 str. rj517
prokMSA_id:11282 str. rj58
2.28.6.781 OTU 1 seq
prokMSA_id:34904 clone KS67 
2.28.6.8 OTU 1 seq
prokMSA_id:49157 alpha B2M68 
2.28.6.851 OTU 1 seq
prokMSA_id:27771 actinobacterium MERTZ_2CM_246 
2.28.6.889 OTU 1 seq
prokMSA_id:11266 str. rj53
2.28.6.890 OTU 1 seq
prokMSA_id:11268 str. pa19
2.28.6.891 OTU 1 seq
prokMSA_id:11269 magnetotactic clone Cs103
2.28.6.928 OTU 1 seq
prokMSA_id:11270 clone CS93
2.28.6.934 OTU 1 seq
prokMSA_id:11272 str. pa119
2.28.6.936 OTU 1 seq
prokMSA_id:11273 magnetotactic clone Cs310
2.28.6.954 OTU 1 seq
prokMSA_id:11277 clone BURTON-17
2.28.6.957 OTU 1 seq
prokMSA_id:11278 str. BD2-11
2.28.6.970 OTU 2 seqs
prokMSA_id:11262 magnetotactic clone Cs308
prokMSA_id:11263 clone CS106
2.28.6.997 OTU 1 seq
prokMSA_id:52165 marine pN1-33 
2.29 FUSOBACTERIA_AND_RELATIVES 91 seqs
2.29.1 LPT.BUCCALIS_SUBGROUP 32 seqs
2.29.1.1057 OTU 3 seqs
prokMSA_id:71467 Leptotrichia sp. LB11 
prokMSA_id:71541 Leptotrichia sp. 'Wee Tee 1999' AF206305
prokMSA_id:71923 Leptotrichia sp. LB06 
2.29.1.1081 OTU 2 seqs
prokMSA_id:11297 Leptotrichia sp
prokMSA_id:49525 Leptotrichia sp. oral clone DA069 
2.29.1.116 OTU 1 seq
prokMSA_id:38061 Leptotrichia sp. oral clone F138 
2.29.1.120 OTU 1 seq
prokMSA_id:31235 Leptotrichia sp. oral clone FP036 
2.29.1.231 OTU 2 seqs
prokMSA_id:11292 Streptobacillus moniliformis str. ANL 370-1
prokMSA_id:11293 Streptobacillus moniliformis ATCC 14647
2.29.1.285 OTU 2 seqs
prokMSA_id:32203 Leptotrichia sp. oral clone BU064 
prokMSA_id:70628 Leptotrichia sp. clone DT031 AF366276
2.29.1.342 OTU 2 seqs
prokMSA_id:73096 Leptotrichia sp. clone DE081 
prokMSA_id:74059 Leptotrichia sp. LB37 
2.29.1.35 OTU 1 seq
prokMSA_id:70038 Leptotrichia sp. oral clone EI013 
2.29.1.367 OTU 1 seq
prokMSA_id:29566 Cf. Leptotrichia sp. AMN-1 
2.29.1.368 OTU 1 seq
prokMSA_id:11291 Sebaldella termitidis ATCC 33386
2.29.1.387 OTU 3 seqs
prokMSA_id:51437 Leptotrichia sp. oral isolate A39FD 
prokMSA_id:70804 Leptotrichia sp. LB16 
prokMSA_id:74297 Leptotrichia sp. LB32 
2.29.1.389 OTU 1 seq
prokMSA_id:11299 str. AVG 2115
2.29.1.455 OTU 1 seq
prokMSA_id:73887 Leptotrichia sp. oral clone EI022 
2.29.1.558 OTU 2 seqs
prokMSA_id:11298 Leptotrichia microbii. L37789
prokMSA_id:58542 Sneathia sanguinegens strain CCUG 41628T
2.29.1.690 OTU 1 seq
prokMSA_id:71850 Leptotrichia sp. LB57 
2.29.1.694 OTU 1 seq
prokMSA_id:74391 Leptotrichia sp. oral clone DR011 
2.29.1.721 OTU 1 seq
prokMSA_id:83573 Leptotrichia sp. oral clone P2PB_51 P1 
2.29.1.779 OTU 3 seqs
prokMSA_id:37488 Leptotrichia sp. oral strain FAC5 
prokMSA_id:70629 Leptotrichia sp. LB23 
prokMSA_id:71688 Human oral AC60 
2.29.1.967 OTU 3 seqs
prokMSA_id:20731 E1-K6 
prokMSA_id:42256 Leptotrichia sp. oral clone FB074 AF385542
prokMSA_id:73108 Leptotrichia-like sp. oral clone BB002 AF287807
2.29.2 PRG.MODESTUM_SUBGROUP 11 seqs
2.29.2.1034 OTU 1 seq
prokMSA_id:41139 Ilyobacter tartaricus DSM 2382 T
2.29.2.348 OTU 1 seq
prokMSA_id:52873 Ilyobacter insuetus DSM 6831 T
2.29.2.364 OTU 1 seq
prokMSA_id:11301 Propionigenium modestum
2.29.2.426 OTU 2 seqs
prokMSA_id:57456 Fusobacteria clone P. palm C/A 63
prokMSA_id:76867 Fusobacteria Ko711 
2.29.2.590 OTU 1 seq
prokMSA_id:16867 Fusobacterium kps68f 
2.29.2.644 OTU 1 seq
prokMSA_id:31785 Ilyobacter polytropus DSM 2926 T
2.29.2.716 OTU 3 seqs
prokMSA_id:11300 Propionigenium maris str. 10succ1 DSM 9537
prokMSA_id:34513 Propionigenium maris strain ML-1
prokMSA_id:42042 Propionigenium maris strain DSL-1
2.29.2.724 OTU 1 seq
prokMSA_id:57439 Fusobacteria clone P. palm A 11
2.29.3 CETOBACTERIUM.CETI 1 seq
2.29.3.378 OTU 1 seq
prokMSA_id:11302 Cetobacterium ceti str. M-3333 NCFB 3026
2.29.5 FUSOBACTERIA_GROUP 47 seqs
2.29.5.451 OTU 1 seq
prokMSA_id:11319 Clostridium rectum NCIMB 10651
2.29.5.488 OTU 41 seqs
prokMSA_id:11306 Fusobacterium simiae ATCC 33568 . X55407
prokMSA_id:11308 Fusobacterium nucleatum subsp. animalis NCTC 12276 . X55404
prokMSA_id:11314 Fusobacterium simiae ATCC 33568 . M58685
prokMSA_id:11315 Fusobacterium periodonticum str. EK1-15 ATCC 33693 . X55405
prokMSA_id:11316 Fusobacterium nucleatum subsp. vincentii ATCC 49256
prokMSA_id:11317 Fusobacterium naviforme str. DMS 20699 NCTC 11464
prokMSA_id:11318 Fusobacterium nucleatum subsp. fusiforme NCTC 11326 . X55403
prokMSA_id:11320 Fusobacterium nucleatum subsp. nucleatum ATCC 25586 . X55401
prokMSA_id:11324 Fusobacterium nucleatum subsp. polymorphum ATCC 10953 . X554
prokMSA_id:11330 Fusobacterium alocis ATCC 35896 . X55406
prokMSA_id:20351 Fusobacterium sp. oral clone CZ006 
prokMSA_id:28718 Human oral AC59 
prokMSA_id:30752 Fusobacterium sp. oral clone AJ050 
prokMSA_id:34568 Fusobacterium nucleatum subsp. nucleatum 
prokMSA_id:39148 clone 33-FL60B98 
prokMSA_id:40432 Fusobacterium sp. oral clone I035 
prokMSA_id:41933 Fusobacterium sp. oral clone EU021 
prokMSA_id:46013 Fusobacterium sp. clone BS019 
prokMSA_id:52269 Fusobacterium sp. oral clone CY024 
prokMSA_id:58280 Fusobacterium nucleatum 
prokMSA_id:59567 Fusobacterium sp. oral clone EX162 
prokMSA_id:59571 Fusobacterium sp. oral clone EX123 
prokMSA_id:64396 Fusobacterium nucleatum subsp. nucleatum ATCC 25586 complete
prokMSA_id:68347 Fusobacterium nucleatum E9_12 subphylotype-E1 oral isolate 
prokMSA_id:70705 E1-K5 
prokMSA_id:72547 Fusobacterium sp. oral clone BS011 
prokMSA_id:72688 E1-K4 
prokMSA_id:72772 Fusobacterium nucleatum subsp. polymorphum AF287812
prokMSA_id:73310 Fusobacterium sp. oral clone R002 
prokMSA_id:77649 Fusobacterium nucleatum subsp. canifelium strain RMA 11693 
prokMSA_id:77942 Fusobacterium nucleatum subsp. canifelium strain RMA 1036 
prokMSA_id:78038 Fusobacterium nucleatum subsp. canifelium strain RMA 12701 
prokMSA_id:78238 Fusobacterium nucleatum subsp. canifelium strain RMA 12708 
prokMSA_id:79662 Fusobacterium nucleatum subsp. vincentii ATCC 49256 Contig03
prokMSA_id:80083 Fusobacterium nucleatum subsp. vincentii ATCC 49256 Contig03
prokMSA_id:80842 Fusobacterium nucleatum subsp. vincentii ATCC 49256 Contig03
prokMSA_id:87941 Fusobacterium genomosp. C2 AY278617
prokMSA_id:88459 Fusobacterium sp. isolate PCR amplicon RL 2253 AY325760
prokMSA_id:94529 Fusobacterium nucleatum subsp. vincentii ATCC 49256 Contig03
prokMSA_id:94655 Fusobacterium nucleatum subsp. vincentii ATCC 49256 Contig03
prokMSA_id:95128 Fusobacterium nucleatum subsp. vincentii ATCC 49256 Contig03
2.29.5.739 OTU 4 seqs
prokMSA_id:11305 Fusobacterium necrophorum str. FnS-1; biotype AB
prokMSA_id:11309 Fusobacterium necrophorum str. FnS40; biotype B
prokMSA_id:11310 Fusobacterium necrophorum str. D4
prokMSA_id:34266 Fusobacterium equorum strain horse
2.29.5.805 OTU 1 seq
prokMSA_id:57457 green non-sulfur clone P. palm C/A 25
2.30 GRAM_POSITIVE_BACTERIA 8712 seqs
2.30.1 HIGH_G+C_BACTERIA 3071 seqs
2.30.1.1 ENVIRONMENTAL_CLONE_WCHA1-48_GROUP 2 seqs
2.30.1.1.1439 OTU 1 seq
prokMSA_id:11332 clone WCHA1-48
2.30.1.1.1453 OTU 1 seq
prokMSA_id:11334 clone WCHA1-78
2.30.1.3 ENVIRONMENTAL_CLONE_MC4_GROUP 6 seqs
2.30.1.3.1233 OTU 2 seqs
prokMSA_id:26545 Metal-contaminated soil clone K20-25 
prokMSA_id:76917 earthworm cast clone c229 
2.30.1.3.1480 OTU 1 seq
prokMSA_id:11341 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 
2.30.1.3.1515 OTU 1 seq
prokMSA_id:11350 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 
2.30.1.3.1707 OTU 1 seq
prokMSA_id:76799 Rubrobacteridae clone WYO30C 
2.30.1.3.1993 OTU 1 seq
prokMSA_id:52274 clone SM1H04 
2.30.1.4 RBB.RADIOTOLERANS_GROUP 26 seqs
2.30.1.4.1107 OTU 3 seqs
prokMSA_id:11357 Rubrobacter xylanophilus str. PRD-1 DSM 9941 . X87135
prokMSA_id:11360 Rubrobacter xylanophilus str. RSPS-15. AJ243871
prokMSA_id:48248 actinobacterium clone pD4 
2.30.1.4.1115 OTU 1 seq
prokMSA_id:41603 Hb7-K4 
2.30.1.4.1127 OTU 1 seq
prokMSA_id:75312 actinobacterium clone JG37-AG-21
2.30.1.4.1149 OTU 1 seq
prokMSA_id:77189 clone C17.11WL 
2.30.1.4.1210 OTU 2 seqs
prokMSA_id:32106 Rubrobacter taiwanensis strain LS-286 
prokMSA_id:36731 Rubrobacter taiwanensis 
2.30.1.4.1235 OTU 2 seqs
prokMSA_id:50362 Hb7-K2 
prokMSA_id:69907 Hb7-K1 
2.30.1.4.1248 OTU 4 seqs
prokMSA_id:11352 Rubrobacter radiotolerans DSM 46359
prokMSA_id:11353 Rubrobacter radiotolerans JCM 2153
prokMSA_id:11354 Rubrobacter radiotolerans str. RALC-4
prokMSA_id:11355 Rubrobacter radiotolerans DSM 5868
2.30.1.4.1298 OTU 1 seq
prokMSA_id:50933 Rubrobacter sp. QSSC8L-10 
2.30.1.4.1313 OTU 1 seq
prokMSA_id:84551 actinobacterium clone FBP269 
2.30.1.4.1539 OTU 1 seq
prokMSA_id:11358 clone TM220
2.30.1.4.1551 OTU 1 seq
prokMSA_id:58144 Ellin301 
2.30.1.4.1612 OTU 1 seq
prokMSA_id:82554 actinobacterium clone FBP483 
2.30.1.4.1611 OTU 1 seq
prokMSA_id:71641 Hb7-K3 
2.30.1.4.1634 OTU 1 seq
prokMSA_id:16588 Q3-6C1 
2.30.1.4.1762 OTU 1 seq
prokMSA_id:47665 antarctic soil clone bh3.17 
2.30.1.4.1892 OTU 1 seq
prokMSA_id:32989 #0319-7H2 
2.30.1.4.1919 OTU 1 seq
prokMSA_id:19651 #0319-2J16 
2.30.1.4.1980 OTU 1 seq
prokMSA_id:70612 soil clone 480-2 
2.30.1.4.2060 OTU 1 seq
prokMSA_id:17393 #0319-7D8 
2.30.1.5 ATOPOBIUM_GROUP 57 seqs
2.30.1.5.2 ATP.MINUTUM_SUBGROUP 57 seqs
2.30.1.5.2.1095 OTU 1 seq
prokMSA_id:39422 clone RFLP 21E 
2.30.1.5.2.1112 OTU 1 seq
prokMSA_id:27160 clone p-3423-SwA2 
2.30.1.5.2.1145 OTU 3 seqs
prokMSA_id:11374 Denitrobacterium detoxificans str. NPOH2
prokMSA_id:11375 Denitrobacterium detoxificans str. NPOH3
prokMSA_id:11376 Denitrobacterium detoxificans str. MAJ1
2.30.1.5.2.1220 OTU 5 seqs
prokMSA_id:25274 Collinsella sp. RCA55-54 
prokMSA_id:36110 Collinsella sp. RCA55-27 
prokMSA_id:36306 Collinsella sp. RCA55-4 
prokMSA_id:37392 Collinsella sp. RCA55-49 
prokMSA_id:38088 Collinsella sp. RCA55-34 
2.30.1.5.2.1226 OTU 3 seqs
prokMSA_id:11382 Atopobium parvulum str. 1246 ATCC 33793
prokMSA_id:11383 Atopobium parvulum str. 1246 ATCC 33793 . X67150
prokMSA_id:35187 Atopobium parvulum 
2.30.1.5.2.1255 OTU 1 seq
prokMSA_id:23706 Collinsella sp. RCA55-58 
2.30.1.5.2.1258 OTU 1 seq
prokMSA_id:76995 actinobacterium clone S15A-MN25
2.30.1.5.2.1294 OTU 1 seq
prokMSA_id:60552 Olsenella sp. clone 1+7-15 
2.30.1.5.2.1383 OTU 2 seqs
prokMSA_id:11380 Atopobium minutum NCFB 2751
prokMSA_id:74853 Lactobacillus minutus 1454 nt
2.30.1.5.2.1382 OTU 5 seqs
prokMSA_id:11371 Eggerthella lenta DSM 2243
prokMSA_id:11372 lentum JCM 9979
prokMSA_id:16304 Eggerthella lenta 
prokMSA_id:34668 Eggerthella sp. MLG043 AF304434
prokMSA_id:72748 str. 82345 AF227849
2.30.1.5.2.1459 OTU 1 seq
prokMSA_id:78283 Actinobacteridae clone:Rs-J59
2.30.1.5.2.1476 OTU 1 seq
prokMSA_id:42971 clone:BCf9-11
2.30.1.5.2.1485 OTU 1 seq
prokMSA_id:31818 Coriobacterium sp. EKSO3 strain EKSO3
2.30.1.5.2.1510 OTU 1 seq
prokMSA_id:29393 Olsenella profusa 
2.30.1.5.2.1659 OTU 1 seq
prokMSA_id:35301 Atopobium oviles strain A2
2.30.1.5.2.1784 OTU 1 seq
prokMSA_id:32126 clone p-275-o5 
2.30.1.5.2.1790 OTU 4 seqs
prokMSA_id:24647 Collinsella sp. RCA55-56 
prokMSA_id:38784 Collinsella sp. RCA56-80 
prokMSA_id:44613 Collinsella sp. RCA55-5 
prokMSA_id:46935 Collinsella sp. RCA56-68 
2.30.1.5.2.1800 OTU 1 seq
prokMSA_id:75442 actinobacterium clone S15A-MN100
2.30.1.5.2.1816 OTU 2 seqs
prokMSA_id:26994 ckncm222-F4M.2B5 
prokMSA_id:46672 ckncm193-F4M.1A3 
2.30.1.5.2.1898 OTU 1 seq
prokMSA_id:78335 Actinobacteridae clone:Rs-J10
2.30.1.5.2.1924 OTU 4 seqs
prokMSA_id:11381 Atopobium rimae str. VPI D140H-11A NCFB 2896 . S44205
prokMSA_id:11384 Atopobium rimae str. VPI D140H-11A NCFB 2896
prokMSA_id:25658 Atopobium sp. oral clone C019 
prokMSA_id:30853 Atopobium rimae 
2.30.1.5.2.1926 OTU 1 seq
prokMSA_id:11369 aerofaciens JCM 7791
2.30.1.5.2.1958 OTU 1 seq
prokMSA_id:43946 Atopobium sp. strain CCUG 38953 
2.30.1.5.2.1959 OTU 1 seq
prokMSA_id:11366 Slackia exigua str. S-7 ATCC 700122
2.30.1.5.2.1956 OTU 1 seq
prokMSA_id:11364 Slackia heliotrinireducens str. RHS 1 NCTC 11029
2.30.1.5.2.1962 OTU 1 seq
prokMSA_id:11367 Coriobacterium glomerans DSM 20642
2.30.1.5.2.1963 OTU 1 seq
prokMSA_id:11368 aerofaciens JCM 7790
2.30.1.5.2.2001 OTU 1 seq
prokMSA_id:42186 rumen 4C3d-3 
2.30.1.5.2.2012 OTU 1 seq
prokMSA_id:11379 JCM 9981
2.30.1.5.2.2021 OTU 1 seq
prokMSA_id:77607 Actinobacteridae clone:Rs-D41
2.30.1.5.2.2027 OTU 1 seq
prokMSA_id:37460 equine intestinal sp. ML10 clone ML10
2.30.1.5.2.2032 OTU 1 seq
prokMSA_id:51091 1 from Patent WO9935240
2.30.1.5.2.2046 OTU 5 seqs
prokMSA_id:11370 aerofaciens JCM 10188
prokMSA_id:17210 Collinsella aerofaciens strain G118
prokMSA_id:23981 Collinsella aerofaciens strain H818
prokMSA_id:49599 Coriobacterium sp. strain CCUG 33918
prokMSA_id:74735 Coriobacterium sp. strain CCUG 33917
2.30.1.6 ACIDIMICROBIUM_GROUP 62 seqs
2.30.1.6.1 ENVIRONMENTAL_CLONE_BDA1-5_SUBGROUP 2 seqs
2.30.1.6.1.1400 OTU 2 seqs
prokMSA_id:11388 Sargasso Sea 10m depth clone BDA1-5
prokMSA_id:53645 sp. amplified from marine plankton 5' end clone BDA1-5A
2.30.1.6.2 A.FERROOXIDANS_SUBGROUP 60 seqs
2.30.1.6.2.1090 OTU 1 seq
prokMSA_id:58319 Acidimicrobium sp. Y0018 
2.30.1.6.2.1113 OTU 1 seq
prokMSA_id:35149 clone 25/4-10 
2.30.1.6.2.1118 OTU 1 seq
prokMSA_id:31042 maize root Zmrc215 
2.30.1.6.2.1155 OTU 2 seqs
prokMSA_id:37993 Ferromicrobium acidophilum 
prokMSA_id:58323 clone ASL4 
2.30.1.6.2.1201 OTU 1 seq
prokMSA_id:60177 clone TK39
2.30.1.6.2.1211 OTU 1 seq
prokMSA_id:56590 clone RCP1-34 
2.30.1.6.2.1256 OTU 1 seq
prokMSA_id:79537 clone ZA3612c 
2.30.1.6.2.1282 OTU 5 seqs
prokMSA_id:11394 clone TM208
prokMSA_id:11398 clone TM232
prokMSA_id:11401 clone TM81
prokMSA_id:63226 clone FW103 
prokMSA_id:75499 actinobacterium clone JG37-AG-8
2.30.1.6.2.1283 OTU 1 seq
prokMSA_id:47937 ARFS-2 
2.30.1.6.2.1288 OTU 1 seq
prokMSA_id:43490 BA84 
2.30.1.6.2.1318 OTU 1 seq
prokMSA_id:48649 thermal soil clone YNPFFP40 
2.30.1.6.2.1367 OTU 2 seqs
prokMSA_id:22795 gold mine D7 
prokMSA_id:41102 gold mine D27 
2.30.1.6.2.1370 OTU 1 seq
prokMSA_id:63306 clone RCP1-37 
2.30.1.6.2.1392 OTU 1 seq
prokMSA_id:63313 clone RCP1-77 
2.30.1.6.2.1391 OTU 1 seq
prokMSA_id:11400 clone TM62
2.30.1.6.2.1407 OTU 2 seqs
prokMSA_id:11404 clone WB003
prokMSA_id:11413 clone WB012
2.30.1.6.2.1408 OTU 1 seq
prokMSA_id:11402 clone UC32f
2.30.1.6.2.1418 OTU 1 seq
prokMSA_id:11406 clone WB005
2.30.1.6.2.1415 OTU 1 seq
prokMSA_id:11405 clone WB004
2.30.1.6.2.1419 OTU 1 seq
prokMSA_id:11408 clone WB007
2.30.1.6.2.1433 OTU 1 seq
prokMSA_id:11409 clone WB008
2.30.1.6.2.1471 OTU 1 seq
prokMSA_id:11411 clone WB010
2.30.1.6.2.1469 OTU 1 seq
prokMSA_id:11410 clone WB009
2.30.1.6.2.1477 OTU 1 seq
prokMSA_id:11412 clone WB011
2.30.1.6.2.1478 OTU 1 seq
prokMSA_id:11414 clone WB014
2.30.1.6.2.1499 OTU 1 seq
prokMSA_id:11419 Acidimicrobium ferrooxidans str. ICP DSM 10331
2.30.1.6.2.1498 OTU 1 seq
prokMSA_id:11417 clone WB017
2.30.1.6.2.1511 OTU 1 seq
prokMSA_id:11395 clone TM210
2.30.1.6.2.1525 OTU 1 seq
prokMSA_id:11397 clone TM226
2.30.1.6.2.1524 OTU 1 seq
prokMSA_id:11396 clone TM213
2.30.1.6.2.1532 OTU 1 seq
prokMSA_id:11399 clone TM56
2.30.1.6.2.1538 OTU 1 seq
prokMSA_id:11421 Microthrix parvicella
2.30.1.6.2.1576 OTU 1 seq
prokMSA_id:56545 actinobacterium clone ML817J-10 
2.30.1.6.2.1588 OTU 1 seq
prokMSA_id:25801 firmicute ARCT1-16 
2.30.1.6.2.1666 OTU 2 seqs
prokMSA_id:60151 clone TK99
prokMSA_id:60183 clone TK06 AJ347026
2.30.1.6.2.1721 OTU 1 seq
prokMSA_id:65445 clone a13156 
2.30.1.6.2.1749 OTU 2 seqs
prokMSA_id:63303 clone RCP2-2 
prokMSA_id:63304 clone RCP2-57 
2.30.1.6.2.1765 OTU 1 seq
prokMSA_id:85916 actinobacterium clone DBBB-76 
2.30.1.6.2.1791 OTU 1 seq
prokMSA_id:84258 clone CCM13a 
2.30.1.6.2.1806 OTU 1 seq
prokMSA_id:21549 CtaxTah-23 
2.30.1.6.2.1853 OTU 1 seq
prokMSA_id:75774 clone JG34-KF-316
2.30.1.6.2.1851 OTU 1 seq
prokMSA_id:29204 actinobacterium clone R106 
2.30.1.6.2.1856 OTU 1 seq
prokMSA_id:63307 clone RCP2-105 
2.30.1.6.2.1914 OTU 1 seq
prokMSA_id:41413 clone SL22 
2.30.1.6.2.1950 OTU 2 seqs
prokMSA_id:45131 #0319-7G19 
prokMSA_id:53975 #0319-7F18 
2.30.1.6.2.1964 OTU 2 seqs
prokMSA_id:60627 firmicute clone AEGEAN_247 
prokMSA_id:60629 firmicute clone AEGEAN_241 
2.30.1.6.2.2014 OTU 1 seq
prokMSA_id:63126 clone MB-A2-100 
2.30.1.6.2.2030 OTU 1 seq
prokMSA_id:63305 clone RCP1-33 
2.30.1.6.2.2031 OTU 1 seq
prokMSA_id:63308 clone RCP1-83 
2.30.1.7 FRANKIA_GROUP 97 seqs
2.30.1.7.1 GDP.OBSCURUS_ASSEMBLAGE 22 seqs
2.30.1.7.1.1188 OTU 2 seqs
prokMSA_id:11431 str. rJ7
prokMSA_id:11450 str. rJ14
2.30.1.7.1.1245 OTU 1 seq
prokMSA_id:51600 Geodermatophilus sp. IM-1092 
2.30.1.7.1.1560 OTU 1 seq
prokMSA_id:11426 clone TM262
2.30.1.7.1.1581 OTU 4 seqs
prokMSA_id:20090 Actinoplanes minutisporangius AB037007
prokMSA_id:32913 Actinoplanes aurantiacus strain IMSNU 22120
prokMSA_id:37020 Actinoplanes aurantiacus 
prokMSA_id:39565 Actinoplanes minutisporangius 
2.30.1.7.1.1694 OTU 1 seq
prokMSA_id:11440 Geodermatophilus obscurus subsp. dictyosporus DSM 43161
2.30.1.7.1.1742 OTU 7 seqs
prokMSA_id:11425 Blastococcus aggregatus ATCC 25902
prokMSA_id:11427 str. G1S leachate of a landfill Vancouver Canada
prokMSA_id:18910 Blastococcus sp. BC448 
prokMSA_id:40121 Blastococcus aggregatus strain DSM 4725T
prokMSA_id:43433 Blastococcus sp. BC517 
prokMSA_id:46074 Blastococcus sp. BC512 
prokMSA_id:74541 Blastococcus sp. BC521 
2.30.1.7.1.1822 OTU 2 seqs
prokMSA_id:69307 Actinomycetales GP-5 
prokMSA_id:71987 Actinobacterium GP-6 
2.30.1.7.1.1920 OTU 1 seq
prokMSA_id:73670 ARFS-5 
2.30.1.7.1.1973 OTU 1 seq
prokMSA_id:11435 str. A7S basalt outcrop Sonora desert USA
2.30.1.7.1.1985 OTU 1 seq
prokMSA_id:11438 str. G6 white marble Athens Greece
2.30.1.7.1.2015 OTU 1 seq
prokMSA_id:11444 Cryptosporangium japonicum str. YU 636-3 IFO 15966
2.30.1.7.2 SCH.POLYMORPHA_SUBGROUP 13 seqs
2.30.1.7.2.1223 OTU 4 seqs
prokMSA_id:11449 Sporichthya polymorpha DSM 46113
prokMSA_id:11451 Sporichthya polymorpha IFO 12702
prokMSA_id:25897 actinomycete isolate YU 736-21 
prokMSA_id:73031 Sporichthya brevicatena 
2.30.1.7.2.1348 OTU 1 seq
prokMSA_id:86523 actinobacterium clone FBP406 
2.30.1.7.2.1506 OTU 1 seq
prokMSA_id:70691 clone 404-57 
2.30.1.7.2.1571 OTU 1 seq
prokMSA_id:45664 FukuS81 
2.30.1.7.2.1701 OTU 2 seqs
prokMSA_id:32457 ARFS-21 
prokMSA_id:34574 ARFS-24 
2.30.1.7.2.1886 OTU 1 seq
prokMSA_id:38121 clone 25/5-66 
2.30.1.7.2.2058 OTU 1 seq
prokMSA_id:30865 clone 1405-72 
2.30.1.7.2.2054 OTU 1 seq
prokMSA_id:37747 Gram-positive SOGA22 
2.30.1.7.2.2062 OTU 1 seq
prokMSA_id:34253 sp. clone 1404-31
2.30.1.7.4 FRANKIA_SUBGROUP 62 seqs
2.30.1.7.4.1094 OTU 1 seq
prokMSA_id:11618 clone ACE-33
2.30.1.7.4.1105 OTU 1 seq
prokMSA_id:11620 Frankia sp
2.30.1.7.4.1121 OTU 1 seq
prokMSA_id:11621 str. Alnus rhizosphere soil amplicon
2.30.1.7.4.1122 OTU 1 seq
prokMSA_id:11622 str. Alnus rhizosphere soil amplicon
2.30.1.7.4.1161 OTU 10 seqs
prokMSA_id:11453 Frankia sp. str. ARgP5
prokMSA_id:11540 Frankia sp. str. CeD ORS 020606
prokMSA_id:11624 Frankia sp. str. Darj16
prokMSA_id:11626 Frankia sp. str. Shil19
prokMSA_id:11637 Frankia sp. str. AVN17s
prokMSA_id:11682 Frankia sp. str. Darj18
prokMSA_id:11692 Frankia "myricanod"
prokMSA_id:11704 Frankia FE12 str. FE12
prokMSA_id:22175 Frankia sp. M16464 isolate M16464
prokMSA_id:34093 Frankia sp. MRn2-2 isolate MRn2-2
2.30.1.7.4.1169 OTU 1 seq
prokMSA_id:11632 clone TM187
2.30.1.7.4.1166 OTU 1 seq
prokMSA_id:11631 clone TM112
2.30.1.7.4.1171 OTU 1 seq
prokMSA_id:11633 clone WB013
2.30.1.7.4.1206 OTU 2 seqs
prokMSA_id:19440 actinobacterium clone R18 
prokMSA_id:85254 Arsenophonus endosymbiont of Dermacentor variabilis isolate 
2.30.1.7.4.1238 OTU 2 seqs
prokMSA_id:42760 clone Ebpr21 
prokMSA_id:44017 Gemmimonas aurantiaca AB072735
2.30.1.7.4.1286 OTU 8 seqs
prokMSA_id:11503 Frankia sp. str. Ea1-28
prokMSA_id:11534 Frankia sp. str. HR27-14
prokMSA_id:11535 Frankia sp
prokMSA_id:11629 Frankia sp. str. SCN10a
prokMSA_id:11630 Frankia sp. AF063642
prokMSA_id:42219 Frankia sp. Sn5-8 isolate Sn5-8
prokMSA_id:93808 Frankia sp. BMG5.12 strain BMG5.12 AJ549325
prokMSA_id:94110 Frankia sp. BMG5.4 strain BMG5.4 AJ549324
2.30.1.7.4.1330 OTU 1 seq
prokMSA_id:11547 clone SAR432
2.30.1.7.4.1337 OTU 1 seq
prokMSA_id:48548 #0425-2M17 
2.30.1.7.4.1379 OTU 1 seq
prokMSA_id:26582 #0319-7F3 
2.30.1.7.4.1390 OTU 1 seq
prokMSA_id:46349 actinobacterium MERTZ_21CM_170 
2.30.1.7.4.1399 OTU 1 seq
prokMSA_id:75656 clone Gitt-KF-183
2.30.1.7.4.1486 OTU 1 seq
prokMSA_id:55589 clone MB-A2-108 
2.30.1.7.4.1547 OTU 1 seq
prokMSA_id:32487 actinobacterium MERTZ_21CM_319 
2.30.1.7.4.1553 OTU 1 seq
prokMSA_id:27048 #0319-6E4 
2.30.1.7.4.1565 OTU 2 seqs
prokMSA_id:75241 actinobacterium clone JG37-AG-115
prokMSA_id:76800 clone JG34-KF-418
2.30.1.7.4.1601 OTU 1 seq
prokMSA_id:11638 clone Ep_T1.148
2.30.1.7.4.1605 OTU 1 seq
prokMSA_id:11639 clone Ep_T1.235
2.30.1.7.4.1613 OTU 3 seqs
prokMSA_id:36404 ARFS-9 
prokMSA_id:43222 ARFS-15 
prokMSA_id:50077 ARFS-34 
2.30.1.7.4.1635 OTU 3 seqs
prokMSA_id:11537 Frankia Cea1.3 str. Cea1.3
prokMSA_id:11538 Frankia Cea5.1 str. Cea5.1
prokMSA_id:40609 Frankia sp. M16386 isolate M16386
2.30.1.7.4.1643 OTU 1 seq
prokMSA_id:11490 Frankia sp. str. Ag45/Mut15
2.30.1.7.4.1644 OTU 5 seqs
prokMSA_id:11548 Frankia sp. str. ACoN24d
prokMSA_id:11598 Frankia sp. str. AcN14a
prokMSA_id:11625 Frankia sp. str. lawj13
prokMSA_id:18201 Frankia sp. M16467 isolate M16467
prokMSA_id:52184 Frankia sp. MpI1 isolate MpI1
2.30.1.7.4.1676 OTU 2 seqs
prokMSA_id:80602 actinobacterium clone CF44
prokMSA_id:83329 Actinobacteridae clone ACF37
2.30.1.7.4.1695 OTU 1 seq
prokMSA_id:83514 actinobacterium clone FBP417 
2.30.1.7.4.1734 OTU 1 seq
prokMSA_id:11593 clone UC43f
2.30.1.7.4.1733 OTU 1 seq
prokMSA_id:11591 clone OPB41
2.30.1.7.4.1811 OTU 1 seq
prokMSA_id:79512 clone ZA3111c 
2.30.1.7.4.1994 OTU 1 seq
prokMSA_id:11544 Frankia sp. str. AgB1-9
2.30.1.7.4.2047 OTU 1 seq
prokMSA_id:44411 #0319-7G21 
2.30.1.7.4.2050 OTU 1 seq
prokMSA_id:11536 clone TM167
2.30.1.8 STREPTOMYCES_SUBDIVISION 597 seqs
2.30.1.8.1 STREPTOMYCES_AND_RELATIVES 356 seqs
2.30.1.8.1.1 STM.ALBUS_SUBSPECIES_ALBUS 1 seq
2.30.1.8.1.1.2057 OTU 1 seq
prokMSA_id:11716 Streptomyces albus subsp. albus DSM 40313
2.30.1.8.1.2 STM.SCABIEI_SUBGROUP 128 seqs
2.30.1.8.1.2.1690 OTU 8 seqs
prokMSA_id:11733 Streptomyces galbus DSM 40480
prokMSA_id:24460 Streptomyces griseochromogenes strain DSM 40499
prokMSA_id:27887 Streptomyces viridochromogenes 
prokMSA_id:34932 Streptomyces sp. EF-4 
prokMSA_id:41535 Streptomyces bobili 
prokMSA_id:42621 Streptomyces sp. Sm22 strain Sm22
prokMSA_id:48947 Streptomyces sp. EF-25 
prokMSA_id:69713 Streptomyces fimbriatus 
2.30.1.8.1.2.1743 OTU 115 seqs
prokMSA_id:11718 Streptomyces diastatochromogenes ATCC 12309
prokMSA_id:11721 str. SR 168
prokMSA_id:11723 Streptomyces scabiei str. SNS-26. D63864
prokMSA_id:11725 Streptomyces seoulensis str. IMSNU-1 IMSNU 21266
prokMSA_id:11729 Streptomyces sp. str. CFBP4531. AJ007428
prokMSA_id:11732 Streptomyces sp. str. 300
prokMSA_id:11734 Streptomyces Z2 str. Z2
prokMSA_id:11736 Streptomyces scabiei ATCC 49173
prokMSA_id:11737 Streptomyces bottropensis ATCC 25435
prokMSA_id:11738 Streptomyces sp. str. CFBP4521
prokMSA_id:11740 Streptomyces hygroscopicus
prokMSA_id:11741 Streptomyces scabiei ATCC 33282. D63863
prokMSA_id:11742 Streptomyces sp. str. CFBP4497
prokMSA_id:11743 Streptomyces sp. str. CFBP4509
prokMSA_id:11744 Streptomyces sp. str. CFBP4508
prokMSA_id:11745 Streptomyces sp. str. CFBP4498
prokMSA_id:11746 Streptomyces scabies str. SSC101. Y15493
prokMSA_id:11747 Streptomyces scabies str. 364
prokMSA_id:11748 Streptomyces scabies str. 267. Y15500
prokMSA_id:11749 Streptomyces scabies str. 380. Y15506
prokMSA_id:11750 Streptomyces scabies str. 302. Y15508
prokMSA_id:11751 Streptomyces scabies str. 289. Y15509
prokMSA_id:11752 Streptomyces EF-73
prokMSA_id:11753 Streptomyces JL164 str. JL 164
prokMSA_id:11754 Streptomyces galbus
prokMSA_id:11757 Streptomyces virginiae IFO 3729
prokMSA_id:11758 Streptomyces lavendulae subsp. lavendulae IFO 3145. D85107
prokMSA_id:11760 Streptomyces lavendulae subsp. lavendulae IFO 13709. D85115
prokMSA_id:11762 Streptomyces sp. str. GP 772; isolate E. Atalan A46R47
prokMSA_id:11765 Streptomyces sp. str. B71277
prokMSA_id:11773 Streptomyces ASB27 str. ASB27
prokMSA_id:11777 Streptomyces microstreptospora IFO 14669
prokMSA_id:11800 Streptomyces sp. str. GP 770; isolate E. Atalan A46R51
prokMSA_id:11804 Streptomyces sp. str. GP 773; isolate E. Atalan A81319
prokMSA_id:11805 Streptomyces sp. str. A46R62
prokMSA_id:11817 Streptomyces virginiae IFO 12827 . D85123
prokMSA_id:11858 Streptomyces albulus str. MF861-C4
prokMSA_id:16585 Streptomyces sp. A14P1 S17 AJ391830
prokMSA_id:16715 Streptomyces sp. NRRL 2834 
prokMSA_id:19036 Streptomyces sp. LS-A24 AF474177
prokMSA_id:20194 Streptomyces sp. B13P3 S35 
prokMSA_id:20285 Streptomyces sp. EF-79 AF112167
prokMSA_id:21602 Streptomyces argillaceus 
prokMSA_id:23098 Streptomyces sp. NRRL 5182 AJ391815
prokMSA_id:24056 Streptomyces sp. D13P3 S23 
prokMSA_id:26657 Streptomyces sp. EF-52 
prokMSA_id:30552 Streptomyces bottropensis strain LE-3A AF397893
prokMSA_id:30608 Streptomyces scabiei strain SBH-3 AF385185
prokMSA_id:31047 Streptomyces sp. strain 346
prokMSA_id:32361 Streptomyces sp. S78 
prokMSA_id:32477 Streptomyces sp. DNK-G02 AF385182
prokMSA_id:32576 Streptomyces tauricus 
prokMSA_id:35613 Streptomyces scabiei strain S33 
prokMSA_id:35664 Streptomyces sp. KN-1220 
prokMSA_id:36466 Streptomyces sp. C9P3 S4 AJ391828
prokMSA_id:38469 Streptomyces kathirae 
prokMSA_id:40593 soil clone 1056-2 
prokMSA_id:42266 Streptomyces sp. C4R3 S3 AJ391827
prokMSA_id:42671 Streptomyces scabiei strain KD75173 AF385186
prokMSA_id:42859 Streptomyces sp. B22P3 S26 AJ391833
prokMSA_id:43763 Streptomyces sp. Soll53 strain Soll53
prokMSA_id:45302 Streptomyces sp. B7 
prokMSA_id:46425 Streptomyces sp. 19504 
prokMSA_id:47420 Streptomyces sp. EF-35 AF112154
prokMSA_id:47571 Streptomyces sp. LS-1 
prokMSA_id:47677 Streptomyces hygroscopicus strain NRRL B-1477
prokMSA_id:47730 Streptomyces scabiei strain DNK-043 AF385183
prokMSA_id:49115 Streptomyces bottropensis strain LE-2 AF397892
prokMSA_id:49364 Streptomyces peucetius 
prokMSA_id:49929 Streptomyces scabiei strain B-4 AF385181
prokMSA_id:50088 Streptomyces sp. DNK-G10 AF385184
prokMSA_id:50437 Streptomyces cyaneus strain DSM 40108
prokMSA_id:50889 Streptomyces longisporus strain ISP 5166
prokMSA_id:51426 Streptomyces mirabilis strain ATCC27447 AF112180
prokMSA_id:51675 Streptomyces sp. YIM26 
prokMSA_id:51904 Streptomyces somaliensis strain M29 
prokMSA_id:51985 Streptomyces scabiei subsp. chosun 
prokMSA_id:52561 Streptomyces jumonjinensis 
prokMSA_id:53324 Streptomyces scabies 23S complete and strain:84232 AB026203
prokMSA_id:53328 Streptomyces scabies 23S complete and strain:CEK-037 AB02620
prokMSA_id:53367 Streptomyces scabies 23S complete and strain:ATCC 49173 AB02
prokMSA_id:53444 Streptomyces scabies 23S complete and strain:84102 AB026208
prokMSA_id:53580 Streptomyces scabies 23S complete and strain:E-2 AB026216
prokMSA_id:53692 Streptomyces scabies 23S complete and strain:8779 AB026209
prokMSA_id:54076 Streptomyces scabies 23S complete and strain:8770 AB026212
prokMSA_id:54131 Streptomyces scabies 23S complete and strain:SNS-26 AB026200
prokMSA_id:54153 Streptomyces scabies 23S complete and strain:RB2 AB026204
prokMSA_id:54184 Streptomyces bottropensis 23S complete and strain:ATCC 25435
prokMSA_id:54201 Streptomyces scabies 23S complete and strain:84174 AB026207
prokMSA_id:54425 Streptomyces scabies 23S complete and strain:8776 AB026213
prokMSA_id:54520 Streptomyces scabies 23S complete and strain:LQH-4 AB026211
prokMSA_id:54645 Streptomyces scabies 23S complete and strain:8722 AB026202
prokMSA_id:54735 Streptomyces scabies 23S complete and strain:ATCC 33282 AB02
prokMSA_id:54757 Streptomyces scabies 23S complete and strain:R90-3 AB026205
prokMSA_id:54792 Streptomyces scabies 23S complete and strain:E-1 AB026215
prokMSA_id:54803 Streptomyces scabies 23S complete and strain:LM5MT-2 AB02621
prokMSA_id:54981 Streptomyces scabies 23S complete and strain:DNK-G01 AB02621
prokMSA_id:56543 Streptomyces tumescens strain Km-2-1 complete 
prokMSA_id:58872 Actinobacterium '#59 white' 
prokMSA_id:62746 Streptomyces sp. C1 
prokMSA_id:64271 Streptomyces sp. YU100 
prokMSA_id:66692 Streptomyces griseoruber 
prokMSA_id:66695 Streptomyces aureus B7319 
prokMSA_id:67018 Streptomyces phaeochromogenes 
prokMSA_id:67675 Streptomyces tumescens strain Cu-3-1 complete 
prokMSA_id:67676 Streptomyces tumescens strain Cu-2-1 complete 
prokMSA_id:67680 Streptomyces tumescens strain B-7-2 complete 
prokMSA_id:69890 Streptomyces peruviensis strain DSM 40592
prokMSA_id:71929 Streptomyces sp. 11709 
prokMSA_id:77075 Streptomyces sp. GE 90852 strain GE 90852
prokMSA_id:77191 Streptomyces sp. EN57 
prokMSA_id:77970 Streptomyces sp. TP-A0274 
prokMSA_id:90342 Streptomyces sp. FXJ46 AY314783
prokMSA_id:90690 Streptomyces sp. FXJ04 AY314784
prokMSA_id:93822 Streptomyces cyaneogriseus AF503490
2.30.1.8.1.2.1941 OTU 1 seq
prokMSA_id:33286 Streptomyces ushikuensis 
2.30.1.8.1.2.1983 OTU 3 seqs
prokMSA_id:11755 str. SR 70
prokMSA_id:27863 Streptomyces cinnabarinus strain ISP 5467
prokMSA_id:75046 Streptomyces sp. A3 
2.30.1.8.1.2.2026 OTU 1 seq
prokMSA_id:46555 Streptomyces sparsogenes strain NRRL 2940T
2.30.1.8.1.3 KTS.SETAE_SUBGROUP 76 seqs
2.30.1.8.1.3.1111 OTU 7 seqs
prokMSA_id:11790 Kitasatospora brunnea IFO 14627
prokMSA_id:11815 Kitasatospora setae JCM 3304
prokMSA_id:20942 Kitasatospora setae 
prokMSA_id:26737 Kitasatospora sp. SK-3406 
prokMSA_id:32241 Kitasatospora sp. SK-3412 
prokMSA_id:40717 Kitasatospora sp. SK-3421 
prokMSA_id:51815 Kitasatospora sp. SK-3255 
2.30.1.8.1.3.1153 OTU 1 seq
prokMSA_id:48363 AT425_EubY10 
2.30.1.8.1.3.1229 OTU 5 seqs
prokMSA_id:11793 str. JL 415 DSM 41754
prokMSA_id:11798 str. JL 134
prokMSA_id:11827 str. J 195
prokMSA_id:11828 str. JL 206 DSM 41755
prokMSA_id:11831 str. JL 83 DSM 41753
2.30.1.8.1.3.1274 OTU 1 seq
prokMSA_id:11807 Trichotomospora caesia IFO 14562
2.30.1.8.1.3.1310 OTU 1 seq
prokMSA_id:36230 Streptomyces beijiangensis 
2.30.1.8.1.3.1325 OTU 2 seqs
prokMSA_id:11829 str. CN 671 DSM 41752
prokMSA_id:11830 str. CN 668
2.30.1.8.1.3.1354 OTU 5 seqs
prokMSA_id:11806 Streptomyces subrutilus DSM 40445
prokMSA_id:11808 Actinomyces sp. str. SR 25
prokMSA_id:11811 Streptomyces lavendulae subsp. lavendulae IFO 12344
prokMSA_id:44555 Streptomyces sp. So54 strain So54
prokMSA_id:62750 Streptomyces sp. P5 
2.30.1.8.1.3.1375 OTU 1 seq
prokMSA_id:72661 soil clone 228-1 
2.30.1.8.1.3.1544 OTU 24 seqs
prokMSA_id:11789 Kitasatospora phosalacinea str. KA-338 JCM 3340
prokMSA_id:11792 Kitasatospora streptosporus IFO 14362
prokMSA_id:11795 Kitasatospora paracochleata str. 14769
prokMSA_id:11796 Kitasatospora griseola str. AM-9660 JCM 3339
prokMSA_id:11797 Kitasatospora melanogena JCM 3337
prokMSA_id:11801 Kitasatospora azatica IFO 13803
prokMSA_id:11802 Kitasatospora kifunense JCM 9081
prokMSA_id:11816 Kitasatospora cheerisanensis str. YC75
prokMSA_id:11821 Kitasatospora cystarginea str. RK-419 JCM 7356
prokMSA_id:11823 Kitasatospora mediocidica IFO 14789. U93324
prokMSA_id:11824 Streptomyces aureofaciens str. A-377 NRRL 2209
prokMSA_id:11825 Kitasatospora C2 str. C2
prokMSA_id:11826 Streptomyces sp. str. 317
prokMSA_id:18850 Kitasatospora cystarginea 
prokMSA_id:23352 Kitasatospora sp. OM-5023 
prokMSA_id:24904 Kitasatospora cochleata strain IFO 14768 
prokMSA_id:27121 Streptomyces aureofaciens 
prokMSA_id:32322 Kitasatospora cochleata 
prokMSA_id:36266 Kitasatospora sp. PU22869 
prokMSA_id:42735 Streptomyces sp. PR4.0307 
prokMSA_id:45323 Kitasatospora griseola 
prokMSA_id:50005 Kitasatospora phosalacinea 
prokMSA_id:52818 Kitasatospora kifunense 
prokMSA_id:86939 Streptomyces sampliensis strain VT-36 AY260167
2.30.1.8.1.3.1617 OTU 1 seq
prokMSA_id:35160 soil clone 41-1 
2.30.1.8.1.3.1771 OTU 27 seqs
prokMSA_id:11764 Streptomyces setonii ATCC 25497
prokMSA_id:11766 Streptomyces JCM7249 JCM 7249
prokMSA_id:11767 Streptomyces JCM7250 JCM 7250
prokMSA_id:11770 str. SR 119
prokMSA_id:11771 Streptomyces sp. str. 254
prokMSA_id:11772 Streptomyces ASSF22 str. ASSF22
prokMSA_id:11780 Streptomyces ASSF13 str. ASSF13
prokMSA_id:11787 Streptomyces griseus subsp. griseus str. 2247
prokMSA_id:11794 Streptomyces ornatus DSM 40307
prokMSA_id:17449 Streptomyces sp. So10 strain So10
prokMSA_id:19804 Streptomyces caviscabies strain ATCC51928 
prokMSA_id:20768 Streptomyces sp. EF-91 
prokMSA_id:30880 Streptomyces sp. KN-0479 
prokMSA_id:31028 Streptomyces sp. OB-35 
prokMSA_id:35011 Streptomyces sp. EF-93 
prokMSA_id:35685 Streptomyces sp. Nm5 strain Nm5
prokMSA_id:38300 Streptomyces sp. S63 
prokMSA_id:43555 Streptomyces sp. VTT E-99-1326 A4 
prokMSA_id:45786 Streptomyces argenteolus 
prokMSA_id:50476 Streptomyces sp. YIM8 
prokMSA_id:56621 Streptomyces sp. AS 4.1182 
prokMSA_id:63868 Streptomyces flavogriseus strain CBS 101.34T
prokMSA_id:66693 Streptomyces griseus subsp. griseus ISP 5236 
prokMSA_id:73604 S.ornatus DSM 40307 
prokMSA_id:75518 Streptomyces sp. EN23 
prokMSA_id:76219 Streptomyces sp. A13 
prokMSA_id:77539 Streptomyces caviscabies strain SAFR-024 
2.30.1.8.1.3.1841 OTU 1 seq
prokMSA_id:45079 Streptomyces olivaceus 
2.30.1.8.1.4 STM.BIKINIENSIS_SUBGROUP 7 seqs
2.30.1.8.1.4.1786 OTU 7 seqs
prokMSA_id:11832 Streptomyces bikiniensis DSM 40581
prokMSA_id:17191 Streptomyces venezuelae 
prokMSA_id:22704 Streptomyces sp. R22 
prokMSA_id:27046 Streptomyces sp. KJ-72 complete 
prokMSA_id:34014 Streptomyces lipmanii 
prokMSA_id:37181 Streptomyces lateritius 
prokMSA_id:44772 Streptomyces clavuligerus 
2.30.1.8.1.6 STM.SALMONIS 1 seq
2.30.1.8.1.6.1757 OTU 1 seq
prokMSA_id:11839 Streptomyces salmonis DPDU 00098
2.30.1.8.1.8 STM.ARMENIACUS_SUBGROUP 9 seqs
2.30.1.8.1.8.1195 OTU 1 seq
prokMSA_id:11848 str. SR 257
2.30.1.8.1.8.1230 OTU 1 seq
prokMSA_id:11852 Streptomyces CN732 str. CN 732
2.30.1.8.1.8.1339 OTU 1 seq
prokMSA_id:19464 from anoxic bulk soil clone BSV58
2.30.1.8.1.8.1342 OTU 1 seq
prokMSA_id:27478 Streptomyces sp. IM-6840 
2.30.1.8.1.8.1377 OTU 1 seq
prokMSA_id:30701 Streptomyces cattleya 
2.30.1.8.1.8.1436 OTU 1 seq
prokMSA_id:11847 Streptomyces malaysiensis str. ATB-11
2.30.1.8.1.8.1908 OTU 1 seq
prokMSA_id:23521 Streptomyces sp. F50970 
2.30.1.8.1.8.1918 OTU 1 seq
prokMSA_id:36636 Streptomyces sp. IM-7248 
2.30.1.8.1.8.1939 OTU 1 seq
prokMSA_id:46451 Streptomyces sp. KACC 20159 
2.30.1.8.1.9 STM.MASHUENSIS_SUBGROUP 15 seqs
2.30.1.8.1.9.1128 OTU 4 seqs
prokMSA_id:26087 Streptomyces sp. 11AG8 
prokMSA_id:84823 Streptomyces sp. YIM 80305 
prokMSA_id:87210 Streptomyces sp. YIM 80250 AY299619
prokMSA_id:87471 Streptomyces sp. YIM 80244 AY299620
2.30.1.8.1.9.1251 OTU 1 seq
prokMSA_id:11859 Streptomyces macrosporus DSM 41449
2.30.1.8.1.9.1257 OTU 1 seq
prokMSA_id:75252 earthworm cast clone c219 
2.30.1.8.1.9.1280 OTU 1 seq
prokMSA_id:11860 clone OPT29
2.30.1.8.1.9.1284 OTU 1 seq
prokMSA_id:11861 Streptomyces megasporus DSM 41476
2.30.1.8.1.9.1299 OTU 1 seq
prokMSA_id:11863 Streptomyces thermolineatus DSM 41451
2.30.1.8.1.9.1384 OTU 1 seq
prokMSA_id:75823 Rubrobacteridae clone WYO2C 
2.30.1.8.1.9.1536 OTU 1 seq
prokMSA_id:19964 thermal soil clone YNPFFP59 
2.30.1.8.1.9.1739 OTU 1 seq
prokMSA_id:66545 clone cvf70163 
2.30.1.8.1.9.1843 OTU 1 seq
prokMSA_id:78720 clone JG30-KF-A23
2.30.1.8.1.9.1901 OTU 1 seq
prokMSA_id:72508 Earthworm burrow B33D1 
2.30.1.8.1.9.2025 OTU 1 seq
prokMSA_id:63785 Verrucomicrobia clone LD1-PA32 
2.30.1.8.1.10 THERMOPHILIC_STREPTOMYCES 13 seqs
2.30.1.8.1.10.1217 OTU 1 seq
prokMSA_id:67031 clone SHA-34
2.30.1.8.1.10.1268 OTU 1 seq
prokMSA_id:24961 clone KS49 
2.30.1.8.1.10.1344 OTU 1 seq
prokMSA_id:11871 Streptomyces sp. str. TB3481
2.30.1.8.1.10.1363 OTU 1 seq
prokMSA_id:11875 str. SR 247
2.30.1.8.1.10.1366 OTU 1 seq
prokMSA_id:44460 a2b044 
2.30.1.8.1.10.1562 OTU 2 seqs
prokMSA_id:11881 clone BPC063
prokMSA_id:11882 str. BD2-10
2.30.1.8.1.10.1652 OTU 1 seq
prokMSA_id:80057 actinobacterium clone Bol7 
2.30.1.8.1.10.1799 OTU 3 seqs
prokMSA_id:11869 clone SCALE-12
prokMSA_id:24466 TAYNAYA-19 
prokMSA_id:26571 ACE-30 
2.30.1.8.1.10.1879 OTU 1 seq
prokMSA_id:24170 actinobacterium MERTZ_0CM_206 
2.30.1.8.1.10.2041 OTU 1 seq
prokMSA_id:38349 actinobacterium MERTZ_21CM_172 
2.30.1.8.1.11 STM.ALBIDOFLAVUS_SUBGROUP 15 seqs
2.30.1.8.1.11.1246 OTU 1 seq
prokMSA_id:11918 Streptomyces diastaticus subsp. diastaticus DSM 40496
2.30.1.8.1.11.1569 OTU 11 seqs
prokMSA_id:11917 Streptomyces sampsonii ATCC 25495
prokMSA_id:20295 Streptomyces sp. VTT E-99-1336 B329 
prokMSA_id:24956 Streptomyces sp. VTT E-99-1330 A83 
prokMSA_id:26614 Streptomyces somaliensis strain DSM 40267 
prokMSA_id:27371 Streptomyces sp. strain ISP 5310
prokMSA_id:33034 Streptomyces sp. KN-0260 
prokMSA_id:33840 Streptomyces sp. AP77 
prokMSA_id:44263 Streptomyces thermotolerans strain ISP 5227
prokMSA_id:49844 Streptomyces sp. VTT E-99-1329 A52 
prokMSA_id:69484 Streptomyces griseus subsp. griseus 
prokMSA_id:81466 Streptomyces sp. VK-A60 
2.30.1.8.1.11.1697 OTU 1 seq
prokMSA_id:11920 Streptomyces sp. str. D921
2.30.1.8.1.11.1702 OTU 1 seq
prokMSA_id:11924 clone WCHB1-81
2.30.1.8.1.11.2017 OTU 1 seq
prokMSA_id:50283 At425_EubF1 
2.30.1.8.1.12 STM.COELICOLOR_SUBGROUP 91 seqs
2.30.1.8.1.12.1244 OTU 1 seq
prokMSA_id:11961 clone SCALE-8
2.30.1.8.1.12.1340 OTU 59 seqs
prokMSA_id:11849 Streptomyces griseocarneus DSM 40004
prokMSA_id:11864 Streptomyces mashuensis DSM 40221
prokMSA_id:11868 Streptomyces thermodiastaticus DSM 40573
prokMSA_id:11870 Streptomyces thermoviolaceus subsp. thermoviolaceus str. ISP
prokMSA_id:11872 Streptomyces thermodiastaticus JCM 4840
prokMSA_id:11873 Streptomyces thermoviolaceus subsp. apingens DSM 41392
prokMSA_id:11874 Streptomyces X13 str. X13
prokMSA_id:11876 Streptomyces thermocarboxydovorans DSM 44294
prokMSA_id:11877 Streptomyces thermocarboxydovorans DSM 44295
prokMSA_id:11878 Streptomyces thermocarboxydovorans DSM 44296
prokMSA_id:11879 Streptomyces thermodiastaticus str. NAR 85
prokMSA_id:11880 Streptomyces thermodiastaticus JCM 4840
prokMSA_id:11883 Streptomyces thermovulgaris str. ISP 5444 DSM 40444
prokMSA_id:11884 Streptomyces thermovulgaris str. ISP 5579 DSM 40579
prokMSA_id:11889 Streptomyces thermoalcalitolerans str. TA56 DSM 41741
prokMSA_id:11925 Streptomyces thermocarboxydus str. AT37 DSM 44293
prokMSA_id:11926 Streptomyces thermocarboxydus str. NH50
prokMSA_id:11927 Streptomyces NT 322 str. NT 322 strain
prokMSA_id:11930 Streptomyces ASSF15 str. ASSF15
prokMSA_id:11931 Streptomyces ASB37 str. ASB37
prokMSA_id:11932 Streptomyces espinosus NRRL 5729
prokMSA_id:11934 Streptomyces sp. A25 
prokMSA_id:11935 Streptomyces coelicolor str. M145; A32
prokMSA_id:11946 Streptomyces coelicolor str. A32
prokMSA_id:11948 Streptomyces glaucescens
prokMSA_id:11952 Streptomyces goraiensis str. MTCC 3154
prokMSA_id:11956 str. SR 179c
prokMSA_id:11960 Streptomyces caelestis NRRL 2418
prokMSA_id:11962 Streptomyces vellosus NRRL 8037
prokMSA_id:11964 Streptomyces bluensis
prokMSA_id:16836 Streptomyces afghaniensis strain ISP 5228
prokMSA_id:16961 Streptomyces thermoviolaceus strain AB106 
prokMSA_id:22974 Streptomyces somaliensis strain DSM 40738 
prokMSA_id:26260 Streptomyces purpurascens 
prokMSA_id:26713 Streptomyces roseoflavus 
prokMSA_id:30298 Streptomyces thermosacchari strain K127 
prokMSA_id:30686 Streptomyces thermosacchari strain K122 
prokMSA_id:30734 Streptomyces thermosacchari strain K126 
prokMSA_id:31629 Streptomyces janthinus strain ISP 5206
prokMSA_id:35830 Streptomyces heteromorphus 
prokMSA_id:35911 Streptomyces maritimus 
prokMSA_id:36096 Streptomyces sp. AT10 
prokMSA_id:38018 Streptomyces thermocoprophilus strain B19 
prokMSA_id:39423 Streptomyces sp. UAH44 strain UAH44
prokMSA_id:44142 Streptomyces sp. CH-M-1035 
prokMSA_id:47723 Streptomyces sp. EF-2 
prokMSA_id:51020 Streptomyces steffisburgensis 
prokMSA_id:52246 Streptomyces albus subsp. albus 
prokMSA_id:59982 Streptomyces speibonae 
prokMSA_id:63867 Streptomyces albogriseolus strain NRRL B-1305T
prokMSA_id:67229 Streptomyces sp. NK1057 
prokMSA_id:69481 Streptomyces cattleya 
prokMSA_id:70639 Streptomyces roseoflavus 
prokMSA_id:74503 Streptomyces panayensis 
prokMSA_id:82694 Streptomyces plemorphus 
prokMSA_id:82727 Streptomyces nanningensis 
prokMSA_id:83402 Streptomyces maritimus AY247716
prokMSA_id:85226 Streptomyces tendae 
prokMSA_id:85361 Streptomyces hebeiensis 
2.30.1.8.1.12.1639 OTU 24 seqs
prokMSA_id:11919 Streptomyces rutgersensis subsp. rutgersensis DSM 40077
prokMSA_id:11921 Streptomyces intermedius DSM 40372
prokMSA_id:11922 Streptomyces nodosus ATCC 14899
prokMSA_id:11923 Streptomyces gougerotii DSM 40324
prokMSA_id:11928 Streptomyces lividans str. TK21 =rrnB
prokMSA_id:11933 Streptomyces ambofaciens
prokMSA_id:11936 Streptomyces coelicolor
prokMSA_id:11940 Streptomyces eurythermus ATCC 14975
prokMSA_id:11941 Streptomyces nodosus ATCC 14899
prokMSA_id:11942 Streptomyces nodosus ATCC 14899
prokMSA_id:11943 Streptomyces nodosus ATCC 14899
prokMSA_id:11949 Streptomyces pseudogriseolus NRRL 3985
prokMSA_id:11951 Streptomyces CHR3 str. CHR3
prokMSA_id:11954 Streptomyces tendae ATCC 19812
prokMSA_id:11955 Streptomyces CHR28 str. CHR28
prokMSA_id:16535 Streptomyces sp. EF-14 
prokMSA_id:24646 Streptomyces coelicolor cosmid I51
prokMSA_id:25222 Streptomyces griseus subsp. griseus 
prokMSA_id:37883 Streptomyces sp. EF-60 
prokMSA_id:48414 Streptomyces sp. NRRL 5799 
prokMSA_id:49899 Streptomyces sp. SNG9 complete 
prokMSA_id:54479 Streptomyces sp. EF-51 
prokMSA_id:69739 Streptomyces nogalater 
prokMSA_id:78531 Streptomyces sp. 40003 
2.30.1.8.1.12.1795 OTU 1 seq
prokMSA_id:11944 Streptomyces sp. NRRL 3890
2.30.1.8.1.12.1846 OTU 1 seq
prokMSA_id:11953 Streptomyces brasiliensis str. CCIB 71 DSM 43159
2.30.1.8.1.12.2045 OTU 5 seqs
prokMSA_id:62707 actinobacterium clone ML602J-44 
prokMSA_id:80446 actinobacterium clone ML615J-23 
prokMSA_id:80623 actinobacterium clone ML817J-9 
prokMSA_id:80775 actinobacterium clone ML615J-2 
prokMSA_id:81134 actinobacterium ML602J-44 
2.30.1.8.2 ACTINOMADURA_SUBGROUP 126 seqs
2.30.1.8.2.1 NOCARDIOPSIS_SUBGROUP 56 seqs
2.30.1.8.2.1.1 TBF.FUSCA_SUBGROUP 10 seqs
2.30.1.8.2.1.1.1467 OTU 1 seq
prokMSA_id:52732 Thermobifida cellulolytica strain TB100
2.30.1.8.2.1.1.1520 OTU 3 seqs
prokMSA_id:11968 Thermobifida fusca str. 190Th ATCC 27730
prokMSA_id:11970 Thermobifida fusca str. 190Th ATCC 27730
prokMSA_id:32820 Thermomonospora fusca strain IFO 14071 
2.30.1.8.2.1.1.1631 OTU 1 seq
prokMSA_id:49061 MERTZ_2CM_64 
2.30.1.8.2.1.1.1693 OTU 3 seqs
prokMSA_id:23192 actinobacterium clone 4-42 
prokMSA_id:63108 clone MC-C2-120 
prokMSA_id:63110 clone MB-B2-107 
2.30.1.8.2.1.1.1976 OTU 2 seqs
prokMSA_id:11969 clone ACE-43
prokMSA_id:36942 MERTZ_2CM_212 
2.30.1.8.2.1.2 NRP.DASSONVILLEI_SUBGROUP 46 seqs
2.30.1.8.2.1.2.1194 OTU 2 seqs
prokMSA_id:25615 Brachystreptospora xinjiangensis 
prokMSA_id:68398 Nocardiopsis sp. YIM90006 
2.30.1.8.2.1.2.1385 OTU 11 seqs
prokMSA_id:11972 str. YIM90002
prokMSA_id:11974 str. SR 210. X87313
prokMSA_id:44196 Streptomonospora albus 
prokMSA_id:53459 Nocardiopsis kunsanensis HA-9T 
prokMSA_id:67689 Nocardiopsis compostus KS9 
prokMSA_id:67690 Nocardiopsis compostus KS8 
prokMSA_id:68396 Nocardiopsis sp. YIM90014 
prokMSA_id:68397 Nocardiopsis sp. YIM90009 AY082065
prokMSA_id:88578 Nocardiopsis sp. 10002 AY297774
prokMSA_id:91978 Nocardiopsis sp. 10063 AY336515
prokMSA_id:94921 Nocardiopsis salina AY373031
2.30.1.8.2.1.2.1458 OTU 4 seqs
prokMSA_id:63691 Nocardiopsis sp. 99-08-186A complete 
prokMSA_id:63697 Nocardiopsis sp. 99-20-007A complete 
prokMSA_id:63702 Nocardiopsis sp. 99-21-444A complete 
prokMSA_id:63704 Nocardiopsis sp. 97-38-018A complete 
2.30.1.8.2.1.2.1894 OTU 1 seq
prokMSA_id:41061 Nocardiopsis halophila strain DSM 44494T
2.30.1.8.2.1.2.1991 OTU 28 seqs
prokMSA_id:11971 Nocardiopsis dassonvillei DSM 40465
prokMSA_id:11973 Nocardiopsis dassonvillei DSM 43884
prokMSA_id:11975 Nocardiopsis synnemataformans str. D-1215 JCM 10456
prokMSA_id:11976 Nocardiopsis dassonvillei DSM 43111
prokMSA_id:11977 Nocardiopsis dassonvillei IFO 14626
prokMSA_id:11978 Nocardiopsis lucentensis DSM 44048
prokMSA_id:11979 Nocardiopsis alba DSM 43377
prokMSA_id:11980 Prauseria hordei str. SH261
prokMSA_id:11981 Prauseria hordei str. SH82
prokMSA_id:11982 Nocardiopsis listeri DSM 40297
prokMSA_id:11983 Nocardiopsis prasina DSM 43845
prokMSA_id:23374 Nocardiopsis dassonvillei strain 823 
prokMSA_id:23931 Nocardiopsis sp. 123 
prokMSA_id:24444 Nocardiopsis halototerans strain DSM 44410
prokMSA_id:26617 Nocardiopsis umidischolae 
prokMSA_id:30188 Nocardiopsis exhalans AY036000
prokMSA_id:33658 Nocardiopsis sp. 704a 
prokMSA_id:35537 Nocardiopsis sp. ES10.1 AY028325
prokMSA_id:41607 Nocardiopsis tropica 
prokMSA_id:44792 Nocardiopsis metallicus strain R2A
prokMSA_id:47196 Nocardiopsis dassonvillei strain JPL-3 
prokMSA_id:52175 Nocardiopsis alba 
prokMSA_id:55246 Nocardiopsis tangguensis 
prokMSA_id:55606 Nocardiopsis viridoflava 
prokMSA_id:60273 Nocardiopsis sp. clone GCPF48 
prokMSA_id:67687 Nocardiopsis alba KS21 
prokMSA_id:79107 Nocardiopsis aegyptica strain DSM 44442
prokMSA_id:83383 Nocardiopsis egyptensis 
2.30.1.8.2.2 THS.BISPORA_SUBGROUP 6 seqs
2.30.1.8.2.2.1236 OTU 4 seqs
prokMSA_id:11985 Thermobispora bispora str. R51 ATCC 19993 =rrnB
prokMSA_id:11986 Thermobispora bispora str. R51 ATCC 19993 =rrnD
prokMSA_id:11987 Microbispora bispora JCM 3082
prokMSA_id:11988 Thermobispora bispora str. R51 ATCC 19993
2.30.1.8.2.2.2013 OTU 2 seqs
prokMSA_id:11989 Thermobispora bispora str. R51 ATCC 19993 =
prokMSA_id:11990 Thermobispora bispora str. R51 ATCC 19993 =rrnC
2.30.1.8.2.3 TMMS.CURVATA_SUBGROUP 4 seqs
2.30.1.8.2.3.1151 OTU 3 seqs
prokMSA_id:11996 Thermomonospora curvata DSM 43183
prokMSA_id:11998 Thermomonospora curvata JCM 3096
prokMSA_id:11999 Thermomonospora curvata IFO 15933
2.30.1.8.2.3.1448 OTU 1 seq
prokMSA_id:11997 clone Ep_T1.21
2.30.1.8.2.4 AMD.HERBIDA_SUBGROUP 29 seqs
2.30.1.8.2.4.1378 OTU 1 seq
prokMSA_id:39129 a2b024 
2.30.1.8.2.4.1503 OTU 1 seq
prokMSA_id:46523 actinobacterium MERTZ_2CM_158 
2.30.1.8.2.4.1741 OTU 22 seqs
prokMSA_id:11991 Actinomadura echinospora IFO 14042
prokMSA_id:12002 Actinomadura libanotica IFO 14095
prokMSA_id:12004 Actinocorallia herbida str. AL-50780 IFO 15485
prokMSA_id:12012 Sarraceniospora aurea IFO 15120
prokMSA_id:12013 Sarraceniospora aurea IFO 14752. AB006177
prokMSA_id:12029 Actinomadura viridis str. Mt-1 IFO 15238
prokMSA_id:12041 Actinomadura coerulea IFO 14679 . U49002
prokMSA_id:12058 Actinomadura fulvescens str. IFO 14347 . U49005
prokMSA_id:20201 Actinomadura aurantiaca AF134066
prokMSA_id:22030 Actinomadura hibisca 
prokMSA_id:24572 Actinomadura hibisca strain DSM 44148T
prokMSA_id:26732 Actinomadura vinacea AF134070
prokMSA_id:26839 Actinomadura oligospora 
prokMSA_id:29010 Actinomadura yumaensis 
prokMSA_id:30118 Actinomadura umbrina 
prokMSA_id:31446 Actinomadura livida 
prokMSA_id:38367 Actinomadura echinospora strain DSM 43163T
prokMSA_id:38388 Actinomadura viridis strain DSM 43175T AJ420141
prokMSA_id:46173 Spirillospora sp. JCM3123 AF163124
prokMSA_id:74068 Actinomadura glomerata AF134068
prokMSA_id:88697 Actinomadura sp. 40007 AY295796
prokMSA_id:89686 Actinomadura sp. 40008 AY295797
2.30.1.8.2.4.1782 OTU 1 seq
prokMSA_id:51620 Actinomadura longicatena 
2.30.1.8.2.4.1859 OTU 1 seq
prokMSA_id:12003 str. JTB31
2.30.1.8.2.4.1866 OTU 1 seq
prokMSA_id:12008 clone Ep_T1.5
2.30.1.8.2.4.1864 OTU 1 seq
prokMSA_id:12007 clone Ep_T1.46
2.30.1.8.2.4.1887 OTU 1 seq
prokMSA_id:12010 clone Ep_T1.9
2.30.1.8.2.5 AMD.MADURAE_SUBGROUP 31 seqs
2.30.1.8.2.5.1369 OTU 1 seq
prokMSA_id:12051 clone Ep_T1.12
2.30.1.8.2.5.1406 OTU 3 seqs
prokMSA_id:12046 Actinomadura kijaniata DSM 43764
prokMSA_id:12047 Actinomadura kijaniata IFO 14229
prokMSA_id:40889 Actinomadura namibiensis strain DSM 44197T
2.30.1.8.2.5.1546 OTU 19 seqs
prokMSA_id:12014 Actinomadura formosensis str. C-36820 JCM 7474
prokMSA_id:12032 Actinomadura madurae JCM 7436
prokMSA_id:12033 Actinomadura madurae DSM 43067
prokMSA_id:12035 Actinomadura citrea IFO 14678
prokMSA_id:12036 Actinomadura verrucosospora IFO 14100
prokMSA_id:12037 Actinomadura luteofluorescens IFO 13057
prokMSA_id:12038 Streptomycoides glaucoflavus IFO 14668
prokMSA_id:12040 Actinomadura glucoflavus str. As4.1202T
prokMSA_id:12043 Actinomadura atramentaria IFO 14695 . U49000
prokMSA_id:12048 Actinomadura madurae IFO 14623
prokMSA_id:16959 Actinomadura cremea subsp. cremea 
prokMSA_id:18352 Actinomadura fulvescens strain DSM 43923T
prokMSA_id:25601 Thermomonospora formosensis strain IFO 14204 
prokMSA_id:29049 Pseudonocardiaceae str. PA151 complete 
prokMSA_id:37666 Actinomadura mexicana 
prokMSA_id:37892 Actinomadura pelletieri 
prokMSA_id:39421 Actinomadura formosensis strain DSM 43997T
prokMSA_id:45056 Actinomadura citrea strain DSM 43461T
prokMSA_id:51435 Actinomadura nitritigenes 
2.30.1.8.2.5.1669 OTU 1 seq
prokMSA_id:28823 Pseudonocardiaceae str. PA123 complete 
2.30.1.8.2.5.1916 OTU 1 seq
prokMSA_id:12028 Actinomadura macra IFO 14102
2.30.1.8.2.5.1929 OTU 1 seq
prokMSA_id:12030 Actinomadura cremea subsp. rifamycini IFO 14183
2.30.1.8.2.5.1943 OTU 1 seq
prokMSA_id:12034 clone Ep_T1.145
2.30.1.8.2.5.1947 OTU 1 seq
prokMSA_id:12039 Actinomadura catellatospora str. AS4.1522T
2.30.1.8.2.5.1978 OTU 1 seq
prokMSA_id:12044 clone Ep_T1.240
2.30.1.8.2.5.1979 OTU 1 seq
prokMSA_id:12045 Parvopolyspora pallida IFO 14788
2.30.1.8.2.5.2043 OTU 1 seq
prokMSA_id:51116 Actinomadura latina 
2.30.1.8.3 STREPTOSPORANGIUM_SUBGROUP 115 seqs
2.30.1.8.3.1 STS.NONDIASTATICUM_SUBGROUP 4 seqs
2.30.1.8.3.1.1373 OTU 1 seq
prokMSA_id:12059 Streptosporangium roseum JCM 3005
2.30.1.8.3.1.1410 OTU 1 seq
prokMSA_id:12060 clone Ep_T1.217
2.30.1.8.3.1.1413 OTU 1 seq
prokMSA_id:12061 DA016 
2.30.1.8.3.1.1416 OTU 1 seq
prokMSA_id:12062 Streptosporangium roseum DSM 43021
2.30.1.8.3.3 STS.ROSEUM_SUBGROUP 30 seqs
2.30.1.8.3.3.1158 OTU 28 seqs
prokMSA_id:12065 Streptosporangium nondiastaticum DSM 43848
prokMSA_id:12067 Streptosporangium viridialbum DSM 46131. X89954
prokMSA_id:12068 Streptosporangium pseudovulgare DSM 43181 . X89946
prokMSA_id:12069 Streptosporangium pseudovulgare IFO 13991
prokMSA_id:12070 Streptosporangium nondiastaticum IFO 13990
prokMSA_id:12071 Streptosporangium fragile DSM 43847
prokMSA_id:12072 Streptosporangium fragile IFO 14311
prokMSA_id:12073 Streptosporangium sp. DSM 43137
prokMSA_id:12074 str. SR 58
prokMSA_id:12075 Streptosporangium longisporum IFO 13141
prokMSA_id:12076 Streptosporangium album DSM 43023 . X89934
prokMSA_id:12078 Streptosporangium roseum DSM 43871. X89948
prokMSA_id:12079 Streptosporangium vulgare DSM 46133
prokMSA_id:12081 Streptosporangium vulgare subsp. "antibioticum" DSM 44112
prokMSA_id:12082 Streptosporangium roseum subsp. "incarnatum" DSM 44111. X899
prokMSA_id:12084 Streptosporangium "rubrum" DSM 44095. X89950
prokMSA_id:12087 Streptosporangium "brasiliense" DSM 44109
prokMSA_id:12088 Streptosporangium roseum DSM 43021 . X89947
prokMSA_id:12089 Streptosporangium amethystogenes DSM 46128
prokMSA_id:12090 Streptosporangium "koreanum" DSM 44110. X89943
prokMSA_id:12091 Streptosporangium longisporum DSM 43180
prokMSA_id:12092 Streptosporangium vulgare DSM 43802 . X89955
prokMSA_id:12093 Streptosporangium vulgare IFO 13985
prokMSA_id:12095 Streptosporangium 11007 str. 11007
prokMSA_id:12096 Streptosporangium 15110 str. 15110
prokMSA_id:12102 Planomonospora parontospora subsp. parontospora IFO 13880
prokMSA_id:12103 Planomonospora parontospora subsp. antibiotica JCM 3094
prokMSA_id:46051 Planomonospora sphaerica 
2.30.1.8.3.3.1189 OTU 1 seq
prokMSA_id:12080 Streptosporangium 7113 str. 7113
2.30.1.8.3.3.1564 OTU 1 seq
prokMSA_id:12085 clone Ep_T1.10
2.30.1.8.3.4 STS.VIOLACEOCHROMOGENES_SUBGROUP 3 seqs
2.30.1.8.3.4.1664 OTU 3 seqs
prokMSA_id:12097 Streptosporangium violaceochromogenes JCM 3281
prokMSA_id:12098 Streptosporangium violaceochromogenes DSM 43872
prokMSA_id:12099 Streptosporangium violaceochromogenes DSM 43849
2.30.1.8.3.5 STS.CARNEUM_SUBGROUP 2 seqs
2.30.1.8.3.5.1535 OTU 1 seq
prokMSA_id:12101 Streptosporangium 5866 str. 5866
2.30.1.8.3.5.1534 OTU 1 seq
prokMSA_id:12100 Streptosporangium carneum DSM 44125
2.30.1.8.3.6 PMS.PARONTOSPORA_SUBGROUP 1 seq
2.30.1.8.3.6.1150 OTU 1 seq
prokMSA_id:17513 Clavisporangium rectum 
2.30.1.8.3.7 STS.VIRIDIALBUM_SUBGROUP 6 seqs
2.30.1.8.3.7.1555 OTU 6 seqs
prokMSA_id:12105 Streptosporangium viridialbum DSM 43801 . X89953
prokMSA_id:12106 Streptosporangium viridialbum JCM 3027
prokMSA_id:97252 Streptosporangium sp. 322G04 AB124126
prokMSA_id:97688 Streptosporangium sp. 334G09 AB124288
prokMSA_id:98299 Streptosporangium sp. 334D03 AB124252
prokMSA_id:98400 Streptosporangium sp. 322C09 AB124088
2.30.1.8.3.8 PBS.LONGISPORA_SUBGROUP 6 seqs
2.30.1.8.3.8.1277 OTU 2 seqs
prokMSA_id:12108 Planobispora longispora IFO 13918
prokMSA_id:73964 Planobispora longispora strain IFO13918 
2.30.1.8.3.8.1380 OTU 1 seq
prokMSA_id:16975 Streptosporangiaceae str. IM-6876 
2.30.1.8.3.8.1595 OTU 2 seqs
prokMSA_id:46890 Streptosporangiaceae str. IM-7193 
prokMSA_id:50123 Streptosporangiaceae str. IM-7097 
2.30.1.8.3.8.1735 OTU 1 seq
prokMSA_id:45962 Nonomuraea roseoviolacea 
2.30.1.8.3.9 NM.SALMONEA_SUBGROUP 45 seqs
2.30.1.8.3.9.1190 OTU 5 seqs
prokMSA_id:12110 Nonomuria spiralis IFO 14097
prokMSA_id:12111 Nonomuria helvata IFO 14681
prokMSA_id:12114 Nonomuria angiospora IFO 13155
prokMSA_id:12118 Nonomuria salmonea IFO 14687
prokMSA_id:12120 Nonomuria polychroma IFO 14345
2.30.1.8.3.9.1224 OTU 35 seqs
prokMSA_id:12104 Planomonospora venezuelensis JCM 3167
prokMSA_id:12109 Planobispora rosea JCM 3166. AB028654
prokMSA_id:12112 Nonomuria pusilla IFO 14684
prokMSA_id:12113 Nonomuria pusilla IFO 14684
prokMSA_id:12115 Nonomuria salmonea DSM 43678 . X97892
prokMSA_id:12116 Cathayosporangium alboflavum IFO 16009
prokMSA_id:12121 Nonomuria fastidiosa IFO 14680
prokMSA_id:12122 Nonomuria africana IFO 14745
prokMSA_id:12123 Nonomuria roseola IFO 14685
prokMSA_id:12124 Nonomuria recticatena IFO 14525
prokMSA_id:12125 Sebekia benihana IFO 14309
prokMSA_id:12133 Streptosporangium corrugatum
prokMSA_id:12134 Streptosporangium corrugatum IFO 13972
prokMSA_id:12135 Streptosporangium corrugatum DSM 43316
prokMSA_id:12136 Streptosporangium claviforme DSM 44127
prokMSA_id:12137 Herbidospora cretacea str. K-319 IFO 15474
prokMSA_id:12138 Microtetraspora fusca IFO 13915 . U48973
prokMSA_id:12139 Microtetraspora niveoalba IFO 15239
prokMSA_id:12140 Microtetraspora glauca IFO 14761
prokMSA_id:12141 Microtetraspora glauca DSM 43311 . X97891
prokMSA_id:12142 Microtetraspora glauca IFO 14761
prokMSA_id:12143 Planotetraspora mira IFO 15435
prokMSA_id:12144 Microbispora rosea subsp. rosea IFO 14044
prokMSA_id:12146 Microbispora corallina str. DF-32
prokMSA_id:12149 Microbispora rosea subsp. rosea ATCC 27099
prokMSA_id:12150 Microbispora rosea subsp. rosea JCM 3021 . U48988
prokMSA_id:12151 Microbispora mesophila str. T-1 JCM 3151 . AF002266
prokMSA_id:23223 Microtetraspora malaysiensis strain:H47-7 AB062383
prokMSA_id:29802 Nonomuraea africana strain DSM 43748
prokMSA_id:30729 Acrocarpaspora pleiomorpha AB025318
prokMSA_id:31910 Microtetraspora malaysiensis strain:Y25-12 AB062385
prokMSA_id:40820 Nonomuraea recticatena strain DSM 43937T
prokMSA_id:49520 Microtetraspora malaysiensis strain:Y1-5-3 AB062384
prokMSA_id:52334 Nonomuraea turkmeniaca AF277201
prokMSA_id:69415 actinomycete strain IFO16010 
2.30.1.8.3.9.1587 OTU 2 seqs
prokMSA_id:18645 Nonomuraea roseoviolacea strain:IFO 15903T
prokMSA_id:19369 Nonomuraea roseoviolacea strain:SF 2303
2.30.1.8.3.9.1955 OTU 1 seq
prokMSA_id:12119 Nonomuria ferruginea str. 487-2 IFO 14094
2.30.1.8.3.9.2016 OTU 1 seq
prokMSA_id:25422 Nonomuraea roseoviolacea strain:IFO 14098T
2.30.1.8.3.9.2037 OTU 1 seq
prokMSA_id:73039 Nonomuraea terranata 
2.30.1.8.3.10 TMMS.CHROMOGENA_SUBGROUP 9 seqs
2.30.1.8.3.10.1252 OTU 1 seq
prokMSA_id:34539 Krassilnikovia flexuosa 
2.30.1.8.3.10.1874 OTU 7 seqs
prokMSA_id:12126 Thermomonospora chromogena str. Agre 577 JCM 6244
prokMSA_id:12127 Thermomonospora chromogena ATCC 43196
prokMSA_id:12129 Thermomonospora chromogena ATCC 43196
prokMSA_id:12130 Thermomonospora chromogena ATCC 43196
prokMSA_id:12131 Thermomonospora chromogena ATCC 43196
prokMSA_id:12132 Thermomonospora chromogena ATCC 43196
prokMSA_id:54694 Thermomonospora chromogena strain ATCC43196 rrnF operon 23S 
2.30.1.8.3.10.1989 OTU 1 seq
prokMSA_id:12128 Thermomonospora chromogena ATCC 43196
2.30.1.8.3.11 STS.CORRUGATUM_SUBGROUP 1 seq
2.30.1.8.3.11.1386 OTU 1 seq
prokMSA_id:36455 actinomycete strain:R-31 
2.30.1.8.3.13 MBSP.ROSEA_SUBGROUP 8 seqs
2.30.1.8.3.13.1505 OTU 8 seqs
prokMSA_id:12145 Microbispora rosea subsp. rosea ATCC 33326
prokMSA_id:12147 Microbispora rosea subsp. rosea ATCC 27098
prokMSA_id:12148 Microbispora rosea subsp. aerata ATCC 15448
prokMSA_id:12152 Microbispora rosea subsp. rosea IFO 14876
prokMSA_id:12153 Microbispora rosea subsp. rosea IFO 14041
prokMSA_id:20526 Streptosporangiaceae str. PA154 complete AF223346
prokMSA_id:30485 Streptosporangiaceae str. PA147 complete 
prokMSA_id:67226 Microbispora sp. V2 
2.30.1.9 ARTHROBACTER_SUBDIVISION 880 seqs
2.30.1.9.1 ARTHROBACTER_AND_RELATIVES 672 seqs
2.30.1.9.1.1 LEUCOBACTER_ASSEMBLAGE 13 seqs
2.30.1.9.1.1.1135 OTU 1 seq
prokMSA_id:66699 Rhodoglobus vestali strain LV3
2.30.1.9.1.1.1345 OTU 3 seqs
prokMSA_id:12163 Leucobacter komagatae
prokMSA_id:12164 unnamed organism
prokMSA_id:42597 Leucobacter komagatae 
2.30.1.9.1.1.1460 OTU 1 seq
prokMSA_id:12158 Corynebacterium "aquaticum" JCM 1368
2.30.1.9.1.1.1489 OTU 1 seq
prokMSA_id:12155 Tropheryma whippelii str. patient 1
2.30.1.9.1.1.1550 OTU 1 seq
prokMSA_id:12160 clone WCHB1-08
2.30.1.9.1.1.1568 OTU 2 seqs
prokMSA_id:45333 Nostocoida limicola II strain Ver1
prokMSA_id:49131 Nostocoida limicola II strain Ver2
2.30.1.9.1.1.1574 OTU 1 seq
prokMSA_id:12168 Agrococcus QSSC2-2 str. QSSC2-2
2.30.1.9.1.1.1570 OTU 1 seq
prokMSA_id:12165 Leucobacter komagatae
2.30.1.9.1.1.1899 OTU 1 seq
prokMSA_id:12167 Agrococcus jenensis DSM 9580
2.30.1.9.1.1.1921 OTU 1 seq
prokMSA_id:61927 actinobacterium d8 strain d8
2.30.1.9.1.2 AGROMYCES_SUBGROUP 12 seqs
2.30.1.9.1.2.1361 OTU 1 seq
prokMSA_id:30568 Agromyces bannaensis 
2.30.1.9.1.2.1411 OTU 1 seq
prokMSA_id:38522 Subtercola boreus 
2.30.1.9.1.2.1447 OTU 5 seqs
prokMSA_id:12179 Agromyces mediolanus DSM 20152
prokMSA_id:12183 Agromyces mediolanus JCM 1376
prokMSA_id:12184 Agromyces mediolanus str. CNF 186; K. Aoki AN-15 JCM 9632
prokMSA_id:12185 Agromyces mediolanus str. CNF 208 JCM 9633
prokMSA_id:12186 Agromyces mediolanus str. CNF 183; K. Aoki AN-9 JCM 9631. D4
2.30.1.9.1.2.1624 OTU 1 seq
prokMSA_id:12178 Agromyces cerinus subsp. cerinus JCM 9083
2.30.1.9.1.2.1657 OTU 1 seq
prokMSA_id:12180 Agromyces IFO16235 IFO 16235
2.30.1.9.1.2.1658 OTU 1 seq
prokMSA_id:12181 Agromyces IFO16238 IFO 16238
2.30.1.9.1.2.1912 OTU 2 seqs
prokMSA_id:12175 Agromyces IFO16237 IFO 16236
prokMSA_id:12176 Agromyces IFO16237 IFO 16237
2.30.1.9.1.3 MICROBACTERIUM_SUBGROUP 113 seqs
2.30.1.9.1.3.1 MBM.BARKERI 4 seqs
2.30.1.9.1.3.1.1513 OTU 3 seqs
prokMSA_id:27703 Microbacterium gubbeenense strain LMG S-19263 AF263563
prokMSA_id:33272 Microbacterium gubbeenense strain DPC 5284 
prokMSA_id:97664 actinobacterium clone NAB30 AY395034
2.30.1.9.1.3.1.2024 OTU 1 seq
prokMSA_id:12187 Microbacterium barkeri DSM 20145
2.30.1.9.1.3.2 MBM.ESTERAROMATICUM_SUBGROUP 5 seqs
2.30.1.9.1.3.2.1692 OTU 2 seqs
prokMSA_id:68771 Glacial ice G500K-10 
prokMSA_id:80180 Arctic sea ice ARK10030 
2.30.1.9.1.3.2.1871 OTU 3 seqs
prokMSA_id:12189 Microbacterium esteraromaticum ATCC 8091 . NONE
prokMSA_id:12190 Microbacterium esteraromaticum DSM 8609
prokMSA_id:65230 Microbacterium sp. YK18 
2.30.1.9.1.3.3 MBM.ARABINOGALACTANOLYTICUM_SUBGROUP 3 seqs
2.30.1.9.1.3.3.1583 OTU 1 seq
prokMSA_id:77657 Actinobacteridae clone:Rs-F20
2.30.1.9.1.3.3.1946 OTU 1 seq
prokMSA_id:85042 Curtobacterium fangii 
2.30.1.9.1.3.3.1969 OTU 1 seq
prokMSA_id:12193 clone BPC090
2.30.1.9.1.3.4 MBM.KERATANOLYTICUM_SUBGROUP 37 seqs
2.30.1.9.1.3.4.1241 OTU 21 seqs
prokMSA_id:12192 Microbacterium arabinogalactanolyticum str. M-2 DSM 8611. Y1
prokMSA_id:12202 Microbacterium keratanolyticum IFO 13309
prokMSA_id:12204 Microbacterium keratanolyticum DSM 8606
prokMSA_id:12209 Microbacterium imperiale. AB007414
prokMSA_id:12210 Microbacterium chocolatum IFO 3758 . AB004725
prokMSA_id:12213 Microbacterium aurum DSM 8600
prokMSA_id:12216 Microbacterium arborescens DSM 20754 . X77443
prokMSA_id:12217 Microbacterium arborescens IFO 3750 . AB007421
prokMSA_id:12221 Microbacterium aurum IFO 15204 . AB007418
prokMSA_id:12226 Microbacterium terregens str. 88 IFO 12961
prokMSA_id:12227 Microbacterium terregens str. 88 DSM 20449. Y17239
prokMSA_id:12228 Microbacterium schleiferi str. S 110 IFO 15075 . AB004723
prokMSA_id:12230 Microbacterium schleiferi str. S 110 DSM 20489 . Y17237
prokMSA_id:21283 Microbacterium sp. VKM Ac-2015 
prokMSA_id:33980 Actinobacterium MPD-93 AF403727
prokMSA_id:41920 Microbacterium sp. OS-6 strain OS-6
prokMSA_id:42905 Curtobacterium sp. VKM Ac-2057 
prokMSA_id:47252 Microbacterium sp. absalar 
prokMSA_id:54324 Microbacterium sp. YSS/2001-1 AF417868
prokMSA_id:72245 Microbacterium sp. oral clone AV005b AF385527
prokMSA_id:86965 Microbacterium sp. T2-22 AY278889
2.30.1.9.1.3.4.1667 OTU 10 seqs
prokMSA_id:12212 Microbacterium lacticum
prokMSA_id:12219 Microbacterium lacticum IFO 14135
prokMSA_id:19310 Microbacterium sp. I33 
prokMSA_id:20016 soil clone 1245-2 
prokMSA_id:25944 Microbacterium sp. S10 
prokMSA_id:26827 clone GL178.9 AY038630
prokMSA_id:27593 Rape rhizosphere tsb033 AJ295433
prokMSA_id:34587 clone GL184.20 AY038632
prokMSA_id:38519 Microbacterium sp. VKM Ac-2050 AB042084
prokMSA_id:72348 Microbacterium sp. 170702P4 AY144450
2.30.1.9.1.3.4.1758 OTU 1 seq
prokMSA_id:68742 Glacial ice SB12K-2-1 
2.30.1.9.1.3.4.1779 OTU 5 seqs
prokMSA_id:23056 Microbacterium sp. VKM Ac-2011 
prokMSA_id:26967 Microbacterium sp. VKM Ac-2048 
prokMSA_id:50641 Microbacterium sp. VKM Ac-2014 
prokMSA_id:52309 Microbacterium sp. VKM Ac-2012 
prokMSA_id:54001 Microbacterium sp. VKM Ac-2013 
2.30.1.9.1.3.5 MBM.IMPERIALE_SUBGROUP 48 seqs
2.30.1.9.1.3.5.1124 OTU 1 seq
prokMSA_id:39537 Microbacterium sp. VKM Ac-2016 
2.30.1.9.1.3.5.1186 OTU 2 seqs
prokMSA_id:82683 Cryocola antiquus strain VKM 103PF 
prokMSA_id:82704 Cryocola antiquus strain VKM Ac-2070 
2.30.1.9.1.3.5.1264 OTU 1 seq
prokMSA_id:21520 Actinobacterium clone BIhi33
2.30.1.9.1.3.5.1451 OTU 2 seqs
prokMSA_id:49537 Cryobacterium aff. psychrophilum A1/C-aer/OI 
prokMSA_id:62238 CS117 
2.30.1.9.1.3.5.1507 OTU 1 seq
prokMSA_id:44928 Microbacterium sp. Pla-1 
2.30.1.9.1.3.5.1548 OTU 1 seq
prokMSA_id:12231 str. HTA064
2.30.1.9.1.3.5.1591 OTU 1 seq
prokMSA_id:12246 Microbacterium aurum IFO 15204
2.30.1.9.1.3.5.1625 OTU 1 seq
prokMSA_id:29862 Microbacterium sp. AB005 
2.30.1.9.1.3.5.1705 OTU 2 seqs
prokMSA_id:32010 Actinobacterium KE27CII-4 
prokMSA_id:80401 actinobacterium clone W1-4F AY192285
2.30.1.9.1.3.5.1804 OTU 36 seqs
prokMSA_id:12211 Microbacterium lacticum DSM 20427
prokMSA_id:12215 Microbacterium laevaniformans IFO 14471
prokMSA_id:12220 Microbacterium laevaniformans
prokMSA_id:12222 Microbacterium hominis IFO 15708
prokMSA_id:12223 str. rJ6
prokMSA_id:12224 Microbacterium dextranolyticum
prokMSA_id:12225 Microbacterium sp. IFO 15709
prokMSA_id:12229 str. 13-2
prokMSA_id:12232 Microbacterium flavescens IFO 15039
prokMSA_id:12233 Microbacterium sp. str. gh942
prokMSA_id:12234 Microbacterium dextranolyticum str. M-73 DSM 8607
prokMSA_id:12235 Microbacterium laevaniformans DSM 20140
prokMSA_id:12244 str. HTA459
prokMSA_id:12247 Microbacterium dextranolyticum str. M-73 IFO 14592
prokMSA_id:12250 Microbacterium ketosireducens IFO 14548
prokMSA_id:12251 Microbacterium terrae IFO 15300
prokMSA_id:12252 Microbacterium flavescens DSM 20643
prokMSA_id:12253 Microbacterium terrae DSM 8610
prokMSA_id:12258 Aureobacterium resistens DMMZ 1710 . Y14699
prokMSA_id:18236 RSB-1 
prokMSA_id:19202 Microbacterium nematophilum 
prokMSA_id:24767 Microbacterium sp. oral strain C24KA 
prokMSA_id:26169 TCE16 
prokMSA_id:29423 Microbacterium sp. MAS133 strain MAS133
prokMSA_id:32634 Microbacterium trichotecenolyticum 
prokMSA_id:42242 Blackwater bioreactor BW7 
prokMSA_id:64365 Microbacterium sp. 44574 
prokMSA_id:66592 Microbacterium testaceum strain SE034 
prokMSA_id:68740 Glacial ice SB12K-2-3 
prokMSA_id:71669 Microbacterium laevaniformans LA complete 
prokMSA_id:72814 Microbacterium aerolatum 
prokMSA_id:77157 actinobacterium clone S15A-MN4
prokMSA_id:78414 Phenanthrene-degrading 78 
prokMSA_id:83680 Microbacterium kitamiense strain OB-2 
prokMSA_id:86183 Microbacterium resistens 
prokMSA_id:88097 Microbacterium resistens strain AGP4-3 AY277553
2.30.1.9.1.3.6 MBM.THALASSIUM_SUBGROUP 16 seqs
2.30.1.9.1.3.6.1102 OTU 1 seq
prokMSA_id:33383 Microbacterium sp. 46 
2.30.1.9.1.3.6.1221 OTU 3 seqs
prokMSA_id:12255 Microbacterium halophilum str. N 76 IFO 16062 . AB004714
prokMSA_id:12256 Microbacterium IFO16248 IFO 16248
prokMSA_id:12257 Microbacterium IFO16249 IFO 16249
2.30.1.9.1.3.6.1549 OTU 10 seqs
prokMSA_id:18263 Curtobacterium sp. VKM Ac-2059 AB042094
prokMSA_id:41086 Curtobacterium sp. VKM Ac-2062 
prokMSA_id:41897 Microbacterium sp. VA8728_00 
prokMSA_id:93262 Actinobacterium iRIV12 AY358012
prokMSA_id:93359 Actinobacterium iRIV11 AY358011
prokMSA_id:93663 Actinobacterium iRIII11 AY358003
prokMSA_id:93905 Actinobacterium iRV16 AY358019
prokMSA_id:94101 Actinobacterium iEI7 AY364017
prokMSA_id:94153 Actinobacterium iRII14 AY357998
prokMSA_id:94186 Actinobacterium iRII17 AY357999
2.30.1.9.1.3.6.1640 OTU 1 seq
prokMSA_id:12254 Microbacterium thalassium IFO 16060
2.30.1.9.1.3.6.1974 OTU 1 seq
prokMSA_id:47210 Curtobacterium sp. VKM Ac-2052 
2.30.1.9.1.4 CLAVIBACTER_SUBGROUP 84 seqs
2.30.1.9.1.4.1 CLV.MICHIGANENSE_SUBGROUP 29 seqs
2.30.1.9.1.4.1.1278 OTU 23 seqs
prokMSA_id:12260 Clavibacter michiganense subsp. michiganense DSM 46364
prokMSA_id:12261 Clavibacter michiganensis subsp. michiganensis str. JCM 1370
prokMSA_id:12263 Clavibacter michiganense subsp. nebraskense DSM 7483
prokMSA_id:12265 Clavibacter michiganense subsp. nebraskense LMG 5627
prokMSA_id:12266 Clavibacter michiganense subsp. insidiosum LMG 3663
prokMSA_id:12268 Clavibacter michiganense subsp. michiganense LMG 7333
prokMSA_id:12269 Clavibacter michiganense subsp. michiganense JCM 3345
prokMSA_id:12270 Clavibacter michiganense subsp. sepedonicum LMG 2889
prokMSA_id:12271 Clavibacter michiganensis subsp. nebraskensis ATCC 27822
prokMSA_id:12272 Clavibacter michiganense. L43096
prokMSA_id:12273 Clavibacter michiganense. U30254
prokMSA_id:12275 Clavibacter michiganense subsp. insidiosum JCM 1369 . D45051
prokMSA_id:19936 Clavibacter michiganensis strain P 250/01
prokMSA_id:37454 Clavibacter michiganensis strain B7 AF406677
prokMSA_id:39549 Clavibacter michiganensis strain P 202/10
prokMSA_id:45123 Curtobacterium sp. VKM Ac-2060 
prokMSA_id:66587 Clavibacter michiganensis 
prokMSA_id:70525 Clavibacter michiganensis complete L43096
prokMSA_id:73009 Glacial ice G50-PD1 
prokMSA_id:73967 Clavibacter michiganensis strain dO AF451847
prokMSA_id:91182 Clavibacter sp. pfB14 AY336543
prokMSA_id:91265 Clavibacter sp. pfB26 AY336555
prokMSA_id:91959 Clavibacter sp. pfB28 AY336557
2.30.1.9.1.4.1.1519 OTU 3 seqs
prokMSA_id:37764 Frigoribacterium sp. 227 AF157478
prokMSA_id:43521 Frigoribacterium sp. 301 AF157479
prokMSA_id:45654 Frigoribacter sp. 801 
2.30.1.9.1.4.1.1522 OTU 1 seq
prokMSA_id:16443 FukuN101 
2.30.1.9.1.4.1.1772 OTU 1 seq
prokMSA_id:83306 Antarctic R-8287 strain R-8287
2.30.1.9.1.4.1.1965 OTU 1 seq
prokMSA_id:80750 Arctic sea ice ARK10165 
2.30.1.9.1.4.2 RTB.RATHAYI_SUBGROUP 35 seqs
2.30.1.9.1.4.2.1086 OTU 5 seqs
prokMSA_id:12281 Detolaasinbacter tsukamotoae str. CM-05
prokMSA_id:12282 Detolaasinbacter shiratae str. CM-01
prokMSA_id:12283 Detolaasinbacter muratae str. CM-10
prokMSA_id:12284 Detolaasinbacter OM-A1 str. OM-A1
prokMSA_id:45224 Mycetocola tolaasinivorans AB074152
2.30.1.9.1.4.2.1098 OTU 1 seq
prokMSA_id:34321 Clavibacter kpa40f 
2.30.1.9.1.4.2.1106 OTU 1 seq
prokMSA_id:67398 Gram-positive LIg-3 isolate LIg-3
2.30.1.9.1.4.2.1197 OTU 5 seqs
prokMSA_id:31778 Frigoribacterium sp. 312 
prokMSA_id:68759 Glacial ice G200-C11 
prokMSA_id:80323 clone ARKCH4-90 
prokMSA_id:80677 Arctic sea ice ARK10173 
prokMSA_id:80754 clone ARKDMS-27 
2.30.1.9.1.4.2.1404 OTU 1 seq
prokMSA_id:59851 Actinobacterium MWH-Ta3 
2.30.1.9.1.4.2.1437 OTU 9 seqs
prokMSA_id:16324 clone BA4 
prokMSA_id:17543 clone S45 
prokMSA_id:30944 clone RO23 
prokMSA_id:35723 clone S56 
prokMSA_id:95180 actinobacterium clone SV1-1 AJ575515
prokMSA_id:96596 actinobacterium clone SV1-7 AJ575517
prokMSA_id:97172 actinobacterium clone SV1-11 AJ575520
prokMSA_id:97372 actinobacterium clone SV1-12 AJ575521
prokMSA_id:98221 actinobacterium clone SV1-16 AJ575522
2.30.1.9.1.4.2.1456 OTU 7 seqs
prokMSA_id:12278 Rathayibacter tritici DSM 7486
prokMSA_id:12279 Rathayibacter tritici ATCC 11402
prokMSA_id:12287 Rathayibacter rathayi JCM 9307
prokMSA_id:12288 Rathayibacter rathayi DSM 7485
prokMSA_id:21685 Rathayibacter carexis 
prokMSA_id:77324 Rathayibacter tritici strain SAFR-009 
prokMSA_id:85118 rumen clone BS39 
2.30.1.9.1.4.2.1527 OTU 1 seq
prokMSA_id:35764 FukuN15 
2.30.1.9.1.4.2.1655 OTU 1 seq
prokMSA_id:50557 Subtercola frigoramans 
2.30.1.9.1.4.2.1909 OTU 1 seq
prokMSA_id:12280 str. 12-8
2.30.1.9.1.4.2.1936 OTU 2 seqs
prokMSA_id:12285 str. QSSC9-20
prokMSA_id:25558 WCHB1-18 
2.30.1.9.1.4.2.2044 OTU 1 seq
prokMSA_id:46295 Frigoribacterium aff. faeni A-1/C-an/E 
2.30.1.9.1.4.3 CUB.CITREUM_SUBGROUP 20 seqs
2.30.1.9.1.4.3.1132 OTU 1 seq
prokMSA_id:73379 actinomycete isolate ON4
2.30.1.9.1.4.3.1173 OTU 1 seq
prokMSA_id:12290 Brevibacterium "helvolum" DSM 20419
2.30.1.9.1.4.3.1333 OTU 1 seq
prokMSA_id:21404 Brevibacterium equis 
2.30.1.9.1.4.3.1599 OTU 1 seq
prokMSA_id:12293 IFO 15706
2.30.1.9.1.4.3.1714 OTU 2 seqs
prokMSA_id:12292 IFO 15616
prokMSA_id:12295 IFO 15702
2.30.1.9.1.4.3.2018 OTU 14 seqs
prokMSA_id:12298 Curtobacterium luteum DSM 20542
prokMSA_id:12299 Curtobacterium citreum DSM 20528
prokMSA_id:17229 Curtobacterium albidum 
prokMSA_id:27533 Curtobacterium sp. VKM Ac-2056 
prokMSA_id:30962 Curtobacterium sp. VKM Ac-1811 
prokMSA_id:35312 Curtobacterium sp. VKM Ac-1376 
prokMSA_id:35440 Curtobacterium herbarum strain DSM 14013T
prokMSA_id:51851 Curtobacterium sp. VKM Ac-1387 
prokMSA_id:59541 CAGY8 strain CAGY8 
prokMSA_id:71860 Curtobacterium sp. IFO 12674T 
prokMSA_id:74824 Curtobacterium sp. VKM Ac-1809 
prokMSA_id:77377 Curtobacterium flaccumfaciens strain SAFR-008 
prokMSA_id:83268 Curtobacterium flaccumfaciens pv. beticila 
prokMSA_id:84851 Curtobacterium flaccumfaciens pv. basellae AY273210
2.30.1.9.1.5 CELLULOMONAS_SUBGROUP 235 seqs
2.30.1.9.1.5.1 CLLM.FLAVIGENA_SUBGROUP 152 seqs
2.30.1.9.1.5.1.1101 OTU 1 seq
prokMSA_id:39609 Promicromonospora sp. IM-0635 
2.30.1.9.1.5.1.1103 OTU 1 seq
prokMSA_id:45648 ARFS-4 
2.30.1.9.1.5.1.1130 OTU 1 seq
prokMSA_id:73976 Georgenia muralis strain 1A-C
2.30.1.9.1.5.1.1216 OTU 1 seq
prokMSA_id:81808 clone KD3-138 
2.30.1.9.1.5.1.1240 OTU 7 seqs
prokMSA_id:24202 Cellulomonadaceae str. WB16 
prokMSA_id:28551 Cellulomonadaceae str. WB15 
prokMSA_id:32484 Cellulomonadaceae str. WB9 
prokMSA_id:42537 Cellulomonadaceae str. WB6 
prokMSA_id:47319 Cellulomonadaceae str. WB12 
prokMSA_id:47814 Cellulomonadaceae str. WB10 
prokMSA_id:50055 Cellulomonadaceae str. WB14 
2.30.1.9.1.5.1.1431 OTU 2 seqs
prokMSA_id:25310 Cellulomonadaceae str. K3 
prokMSA_id:39459 Cellulomonadaceae str. W6 
2.30.1.9.1.5.1.1450 OTU 1 seq
prokMSA_id:24489 Cellulomonadaceae str. K12 
2.30.1.9.1.5.1.1449 OTU 6 seqs
prokMSA_id:25340 Cellulomonadaceae str. Ke 
prokMSA_id:26813 Cellulomonadaceae str. WB13 
prokMSA_id:30724 Cellulomonadaceae str. WB8 
prokMSA_id:30843 Cellulomonadaceae str. WB17 
prokMSA_id:39890 Cellulomonadaceae str. WB7 
prokMSA_id:52372 Cellulomonadaceae str. K10 
2.30.1.9.1.5.1.1490 OTU 1 seq
prokMSA_id:24497 clone S35 
2.30.1.9.1.5.1.1523 OTU 1 seq
prokMSA_id:40713 Dermabacter sp. oral strain B46KS 
2.30.1.9.1.5.1.1559 OTU 1 seq
prokMSA_id:12341 clone BURTON-14
2.30.1.9.1.5.1.1586 OTU 23 seqs
prokMSA_id:12300 Cellulomonas cellasea DSM 20118
prokMSA_id:12315 Cellulomonas flavigena NCIMB 8073
prokMSA_id:12316 Cellulomonas flavigena str. GG
prokMSA_id:12317 Cellulomonas sp. str. 794
prokMSA_id:12318 Cellulomonas persica str. I
prokMSA_id:12320 Cellulomonas uda NCIMB 8200
prokMSA_id:12321 Cellulomonas fimi DSM 20113
prokMSA_id:12323 Cellulomonas flavigena
prokMSA_id:12329 Cellulomonas gelida NCIMB 8076
prokMSA_id:12330 Cellulomonas cellasea
prokMSA_id:12331 Cellulomonas biazotea DSM 20112
prokMSA_id:12332 Cellulomonas GM13 str. GM13
prokMSA_id:12334 Cellulomonas biazotea
prokMSA_id:12338 Cellulomonas gelida
prokMSA_id:12342 Cellulomonas uda
prokMSA_id:12348 Cellulomonas fimi
prokMSA_id:18563 Cellulomonadaceae str. KB8 
prokMSA_id:19709 Cellulomonadaceae str. Wa 
prokMSA_id:29059 Cellulomonadaceae str. K6 
prokMSA_id:29389 Cellulomonadaceae str. K8 
prokMSA_id:42792 Cellulomonadaceae str. W10 
prokMSA_id:47463 Cellulomonas gelida complete 
prokMSA_id:61987 Cellulomonas sp. d6 strain d6
2.30.1.9.1.5.1.1589 OTU 5 seqs
prokMSA_id:12328 Cellulomonas turbata
prokMSA_id:12340 Cellulomonas turbata NCIMB 10587
prokMSA_id:24025 Cellulomonas sp. UFZ-B529 
prokMSA_id:32173 Oerskovia paurometabola strain DSM 14281
prokMSA_id:54867 Oerskovia jenensis strain DSM 46001
2.30.1.9.1.5.1.1592 OTU 1 seq
prokMSA_id:46611 sp. Lake Bogoria isolate 69B4
2.30.1.9.1.5.1.1671 OTU 10 seqs
prokMSA_id:12301 Cellulomonas cellulans DSM 43879
prokMSA_id:12303 Cellulomonas cellulans IFO 16148
prokMSA_id:12309 Oerskovia xanthineolytica NCIMB 11025
prokMSA_id:12335 Cellulomonas cellulans
prokMSA_id:26533 Cellulomonas sp. MN 60.3 isolate MN 60.3
prokMSA_id:41760 Cellulomonas cellulans 
prokMSA_id:55343 Cellulosimicrobium cellulans strain AS 4.1333 
prokMSA_id:73058 Promicromonospora sp. IFO 16225 
prokMSA_id:77900 Cellulosimicrobium cellulans 
prokMSA_id:84538 Cellulomonas sp. CJ10597 
2.30.1.9.1.5.1.1687 OTU 71 seqs
prokMSA_id:11984 unnamed organism. X86601
prokMSA_id:12291 IFO 15614
prokMSA_id:12294 IFO 15777
prokMSA_id:12296 unnamed organism
prokMSA_id:12304 Cellulomonas IFO16242 IFO 16242
prokMSA_id:12305 Cellulomonas IFO16243 IFO 16243
prokMSA_id:12312 Cellulomonas pachnodae str. VPCX2
prokMSA_id:12322 Cellulomonas fermentans
prokMSA_id:12324 Cellulomonas hominis str. DMMZ CE40 CDC group A-3 DSM 9581
prokMSA_id:12326 Cellulomonas sp. str. 1533
prokMSA_id:12327 Cellulomonas sp. str. 1781
prokMSA_id:12333 Actinomyces humiferus NCTC 25174
prokMSA_id:12336 str. SR 272
prokMSA_id:12337 Cellulomonas IFO16239 IFO 16239
prokMSA_id:12339 Promicromonospora enterophila
prokMSA_id:12343 Cellulomonas fermentans DSM 3133
prokMSA_id:12345 str. PB90-5
prokMSA_id:12350 unnamed organism. X94155
prokMSA_id:12353 Sanguibacter suarezii str. ST-26. X79452
prokMSA_id:12425 Renibacterium salmoninarum str. K272/88 Icelandic isolate. X
prokMSA_id:12478 str. B755. L13145
prokMSA_id:12511 Brevibacterium mcbrellneri str. E2cr ATCC 49030 . X93594
prokMSA_id:12698 Kineosporia succinea str. I-273 JCM 9957 . AB003932
prokMSA_id:12759 Aeromicrobium erythreum NRRL B-3381 . M37200
prokMSA_id:12945 Saccharopolyspora sp. str. A215. X76967
prokMSA_id:17773 Curtobacterium sp. RSppiD3 AF190221
prokMSA_id:18301 Arthrobacter ilicis Y13325
prokMSA_id:22581 Brevibacterium avium strain NCFB 3055 Y17962
prokMSA_id:23409 Corynebacterium bovis 
prokMSA_id:24741 Oerskovia jenensis strain DSM 46000
prokMSA_id:25480 Nocardiopsis sp. IM-3701 AF131450
prokMSA_id:29639 Cellulomonas sp. complete strain IFO16066
prokMSA_id:32067 Brevibacterium sp. HZM-1 AF229116
prokMSA_id:32395 #0319-7F7 AF234093
prokMSA_id:33100 Arthrobacter sp. 825 bp Y13326
prokMSA_id:33624 clone Hb5K56 AJ251956
prokMSA_id:37863 Nocardiopsis sp. IM-3791 AF131451
prokMSA_id:38546 Agricultural soil isolate SI-13 AJ252580
prokMSA_id:39735 Cellulomonas sp. d20 strain d20
prokMSA_id:46028 P.hordei isolate SH36 Y07679
prokMSA_id:46093 Skdkislt3 AF300983
prokMSA_id:52650 Nocardiopsis sp. IM-1287 AF131449
prokMSA_id:52667 Cellulomonas variformis strain MX5
prokMSA_id:62293 actinobacterium clone SAb12 AY124424
prokMSA_id:62747 Xylanomonas cellulosilytica 
prokMSA_id:62962 clone LPB61 
prokMSA_id:65386 Brevibacterium helvolum AF511520
prokMSA_id:67658 Arcanobacterium hippocoleae strain CCUG 44697 AJ300767
prokMSA_id:68735 Glacial ice SB12K-6-2 
prokMSA_id:70481 Georgenia sp. strain 3A-1
prokMSA_id:72333 Cellulomonas sp. complete strain IFO16064T
prokMSA_id:78162 Ornithinicoccus sp. TUT1020 
prokMSA_id:78516 clone EarCan106 AY189633
prokMSA_id:78601 actinobacterium clone EarCan090 AY189617
prokMSA_id:79056 Georgenia sp. 2216.35.28 
prokMSA_id:81250 Kocuria sp. KMM 3905 AY211385
prokMSA_id:81576 Cellulomonas sp. CR1-1 
prokMSA_id:81680 clone KD1-70 
prokMSA_id:86708 Nocardiopsis sp. YIM 80191 AY299634
prokMSA_id:86772 Marine pd-17 AY282467
prokMSA_id:87030 Nocardiopsis sp. YIM 80181 AY299631
prokMSA_id:87267 Nocardiopsis sp. YIM 80182 AY299632
prokMSA_id:87611 Nocardiopsis sp. YIM 80174 AY299630
prokMSA_id:87973 Nocardiopsis sp. YIM 80251 AY299633
prokMSA_id:90151 Nocardiopsis sp. 60006 AY297780
prokMSA_id:90605 Actinomycete symbiont 5 of Acromyrmex octospinosus AF491901
prokMSA_id:91188 Nocardiopsis sp. 20030 AY336505
prokMSA_id:91470 Nocardiopsis sp. 20028 AY336503
prokMSA_id:95548 A-F-12 AY395282
prokMSA_id:96597 A-S-20 AY395277
prokMSA_id:97040 Glacial ice MS-T10-08 AY378244
2.30.1.9.1.5.1.1711 OTU 5 seqs
prokMSA_id:12311 Cellulomonas X7 str. X7
prokMSA_id:12313 Promicromonospora sukumoe IFO 15062
prokMSA_id:12314 Promicromonospora sukumoe IFO 14650
prokMSA_id:22867 Promicromonospora sukumoe strain DSM 44121
prokMSA_id:71309 Promicromonospora sukumoe 
2.30.1.9.1.5.1.1719 OTU 1 seq
prokMSA_id:37000 clone KS48 
2.30.1.9.1.5.1.1725 OTU 1 seq
prokMSA_id:43619 Cellulomonadaceae str. WB11 
2.30.1.9.1.5.1.1744 OTU 1 seq
prokMSA_id:71022 Rarobacter incanus 
2.30.1.9.1.5.1.1748 OTU 5 seqs
prokMSA_id:12310 Promicromonospora citrea
prokMSA_id:26352 Beutenbergia cavernosa 
prokMSA_id:44206 Salana multivorans strain Se-3111
prokMSA_id:72122 Cellulomonas sp. complete strain 16063T
prokMSA_id:72500 Promicromonospora vindobonesis strain V-45T
2.30.1.9.1.5.1.1780 OTU 2 seqs
prokMSA_id:12325 Cellulomonas sp. IFO16246 
prokMSA_id:12357 Cellulomonas sp. IFO16240 
2.30.1.9.1.5.1.1848 OTU 1 seq
prokMSA_id:40050 clone KS95 
2.30.1.9.1.5.1.1923 OTU 1 seq
prokMSA_id:12346 str. VeCb6
2.30.1.9.1.5.1.1952 OTU 1 seq
prokMSA_id:12355 Cellulomonas sp. IFO16241 
2.30.1.9.1.5.1.2061 OTU 1 seq
prokMSA_id:38534 Actinobacterium WB2 
2.30.1.9.1.5.3 SGB.INULINUS_SUBGROUP 45 seqs
2.30.1.9.1.5.3.1085 OTU 1 seq
prokMSA_id:77691 Actinobacteridae clone:Rs-Q71
2.30.1.9.1.5.3.1243 OTU 1 seq
prokMSA_id:77790 Actinobacteridae clone:Rs-M95
2.30.1.9.1.5.3.1334 OTU 31 seqs
prokMSA_id:21976 Crater Lake CL500-17 AF316660
prokMSA_id:23427 FukuN30 
prokMSA_id:27163 Crater Lake CL0-113 AF316653
prokMSA_id:30090 GKS2-38 AJ290039
prokMSA_id:30520 GKS2-176 AJ290029
prokMSA_id:31769 FukuN44 AJ290004
prokMSA_id:32861 FukuN8 AJ290008
prokMSA_id:35026 Crater Lake CL500-41 AF316662
prokMSA_id:35381 Crater Lake CL0-47 AF316648
prokMSA_id:35564 Crater Lake CL0-48 AF316649
prokMSA_id:40740 Crater Lake CL0-96 AF316651
prokMSA_id:40821 actinomycete AF141426
prokMSA_id:45942 GKS2-103 
prokMSA_id:50803 GKS2-189 AJ290031
prokMSA_id:54833 GKS2-79 AJ290041
prokMSA_id:60850 clone SG2-138 AY135928
prokMSA_id:72953 SY2-33 AF107509
prokMSA_id:84180 actinobacterium clone TLM06/TLMdgge30 
prokMSA_id:95275 actinobacterium clone SW6 AJ575550
prokMSA_id:95369 actinobacterium clone SW2 AJ575547
prokMSA_id:95931 actinobacterium clone NZ2 AJ575545
prokMSA_id:96076 actinobacterium clone R3 AJ575499
prokMSA_id:96171 actinobacterium clone NO3 AJ575556
prokMSA_id:96268 actinobacterium clone R5 AJ575501
prokMSA_id:96722 actinobacterium clone S12 AJ575513
prokMSA_id:96951 actinobacterium clone N3 AJ575530
prokMSA_id:97083 actinobacterium clone SW1 AJ575546
prokMSA_id:97119 actinobacterium clone S7 AJ575508
prokMSA_id:97386 actinobacterium clone NO1 AJ575555
prokMSA_id:97567 actinobacterium clone N5 AJ575532
prokMSA_id:98434 actinobacterium clone SW7 AJ575551
2.30.1.9.1.5.3.1512 OTU 1 seq
prokMSA_id:43920 actinobacterium TIHP368-75 
2.30.1.9.1.5.3.1556 OTU 2 seqs
prokMSA_id:12360 clone Sva1007
prokMSA_id:16565 gram-positive TIHP368-02 
2.30.1.9.1.5.3.1609 OTU 1 seq
prokMSA_id:12354 clone ACK-M1
2.30.1.9.1.5.3.1630 OTU 1 seq
prokMSA_id:12359 clone Sva0389
2.30.1.9.1.5.3.1945 OTU 1 seq
prokMSA_id:44712 Crater Lake CL0-27 
2.30.1.9.1.5.3.1996 OTU 3 seqs
prokMSA_id:12356 Sanguibacter inulinus str. ST-50 NCFB 3024
prokMSA_id:12361 Sanguibacter keddieii str. ST-74 ATCC 51767
prokMSA_id:38749 clone p-3370-23G2 
2.30.1.9.1.5.3.2008 OTU 3 seqs
prokMSA_id:59845 clone BUG-57
prokMSA_id:97258 actinobacterium clone N4 AJ575531
prokMSA_id:97841 actinobacterium clone R6 AJ575502
2.30.1.9.1.5.4 TRB.TUMESCENS_SUBGROUP 38 seqs
2.30.1.9.1.5.4.1218 OTU 1 seq
prokMSA_id:65431 clone 17 
2.30.1.9.1.5.4.1225 OTU 9 seqs
prokMSA_id:12371 str. Lp2
prokMSA_id:24977 actinobacterium clone SBRA282 AF387308
prokMSA_id:25117 actinobacterium clone SBRA22 
prokMSA_id:32048 actinobacterium clone GCP18 AF387313
prokMSA_id:46307 Tetrasphaera elongata strain:ASP12
prokMSA_id:50153 actinobacterium clone GCP1 AF387312
prokMSA_id:51139 actinobacterium clone SBRB1 AF387311
prokMSA_id:59353 clone HP1B09 
prokMSA_id:59354 clone HP1A06 AF502212
2.30.1.9.1.5.4.1270 OTU 1 seq
prokMSA_id:24962 clone Ebpr20 
2.30.1.9.1.5.4.1301 OTU 1 seq
prokMSA_id:30551 Intrasporangium sp. IM-3749 
2.30.1.9.1.5.4.1358 OTU 1 seq
prokMSA_id:22538 High G+C Gram-positive lpha7 
2.30.1.9.1.5.4.1445 OTU 2 seqs
prokMSA_id:49745 Ornithinimicrobium humiphilum strain DSM 12362
prokMSA_id:50307 soil clone 672-2 
2.30.1.9.1.5.4.1461 OTU 1 seq
prokMSA_id:58688 Lochheadia duodecas 
2.30.1.9.1.5.4.1481 OTU 1 seq
prokMSA_id:61983 Janibacter like sp. V4.BO.43 marine isolate
2.30.1.9.1.5.4.1638 OTU 1 seq
prokMSA_id:40964 Tetrasphaera japonica strain T1-X7 
2.30.1.9.1.5.4.1665 OTU 1 seq
prokMSA_id:12369 Janibacter QSSC8-6 str. QSSC8-6
2.30.1.9.1.5.4.1663 OTU 1 seq
prokMSA_id:12364 Terracoccus luteus DSM 44267
2.30.1.9.1.5.4.1674 OTU 11 seqs
prokMSA_id:12368 Terrabacter sp. str. DPO 1361. Y08853
prokMSA_id:26312 Janibacter brevis strain DSM 13953T AJ310085
prokMSA_id:36954 Janibacter terrae 
prokMSA_id:42562 Janibacter brevis strain:10N
prokMSA_id:55617 Terrabacter sp. YK1 
prokMSA_id:65231 Terrabacter sp. YK21 
prokMSA_id:65232 Terrabacter sp. YK16 
prokMSA_id:65234 Terrabacter sp. YK13 
prokMSA_id:65235 Terrabacter sp. YK11 
prokMSA_id:65236 Terrabacter sp. YK10 
prokMSA_id:65237 Terrabacter sp. YK8 AB070461
2.30.1.9.1.5.4.1700 OTU 1 seq
prokMSA_id:40007 High G+C Gram-positive lpha5 
2.30.1.9.1.5.4.1852 OTU 1 seq
prokMSA_id:86198 Tonsillophilus suis strain:HT1-19
2.30.1.9.1.5.4.1873 OTU 1 seq
prokMSA_id:70294 ARFS-29 
2.30.1.9.1.5.4.1935 OTU 1 seq
prokMSA_id:76746 earthworm intestine clone wi06 
2.30.1.9.1.5.4.1998 OTU 1 seq
prokMSA_id:77483 Knoellia sinensis strain SAFR-013 
2.30.1.9.1.5.4.2055 OTU 2 seqs
prokMSA_id:12372 Terrabacter tumescens
prokMSA_id:24661 Terrabacter tumescens AF005023
2.30.1.9.1.6 ARTHROBACTER_SUBGROUP 180 seqs
2.30.1.9.1.6.1 ARB.GLOBIFORMIS_SUBGROUP 46 seqs
2.30.1.9.1.6.1.1133 OTU 1 seq
prokMSA_id:28143 Renibacterium salmoninarum complete 
2.30.1.9.1.6.1.1154 OTU 1 seq
prokMSA_id:12396 clone SJA-43
2.30.1.9.1.6.1.1156 OTU 1 seq
prokMSA_id:12397 Arthrobacter QSSC8-13 str. QSSC8-13
2.30.1.9.1.6.1.1157 OTU 1 seq
prokMSA_id:12398 Arthrobacter SN16A str. SN16A
2.30.1.9.1.6.1.1266 OTU 6 seqs
prokMSA_id:12417 Arthrobacter psychrolactophilus
prokMSA_id:12418 Arthrobacter psychrolactophilus str. D10
prokMSA_id:12419 Arthrobacter psychrolactophilus str. D2
prokMSA_id:12421 Arthrobacter psychrolactophilus str. RG1
prokMSA_id:71392 Naphthalene-utilizing IS13 
prokMSA_id:72155 Naphthalene-utilizing IS4 
2.30.1.9.1.6.1.1263 OTU 4 seqs
prokMSA_id:12394 Arthrobacter 'RSX II' str. RSX II
prokMSA_id:44320 Arthrobacter sp. R-II-1 
prokMSA_id:49703 Arthrobacter sp. H-I-2 
prokMSA_id:59471 Arthrobacter russicus 
2.30.1.9.1.6.1.1329 OTU 1 seq
prokMSA_id:72934 Citrococcus muralis strain 4-0
2.30.1.9.1.6.1.1557 OTU 5 seqs
prokMSA_id:12407 Arthrobacter oxydans DSM 20119
prokMSA_id:43708 Arthrobacter sp. CAB1 
prokMSA_id:46937 Arthrobacter sp. YH-2001 
prokMSA_id:49669 Arthrobacter sp. 'SMCC G993' 
prokMSA_id:68760 Glacial ice Guliya200-A1 
2.30.1.9.1.6.1.1561 OTU 1 seq
prokMSA_id:48874 Micrococcus lylae strain d10
2.30.1.9.1.6.1.1579 OTU 1 seq
prokMSA_id:49877 Arthrobacter sp. Kaza-36 
2.30.1.9.1.6.1.1593 OTU 19 seqs
prokMSA_id:12395 Arthrobacter globiformis str. 168 DSM 20124
prokMSA_id:12405 Arthrobacter pascens str. B89 DSM 20545
prokMSA_id:12427 Arthrobacter globiformis str. 168 DSM 20124
prokMSA_id:16350 Arthrobacter sp. 'SMCC G960' 
prokMSA_id:17243 Arthrobacter sp. 'SMCC G964' 
prokMSA_id:27187 Arthrobacter sulfonivorans 
prokMSA_id:28569 Arthrobacter sp. 'SMCC G991' 
prokMSA_id:31087 soil clone 987-1 
prokMSA_id:39179 Arthrobacter sp. 'SMCC ZAT200' 
prokMSA_id:39874 soil clone 960-2 
prokMSA_id:44124 Arthrobacter sp. JCM 1339 
prokMSA_id:49314 Arthrobacter sp. 53 
prokMSA_id:68761 Glacial ice CanDirty7 
prokMSA_id:77488 Arthrobacter chlorophenolicus strain SAFR-044 
prokMSA_id:77502 Arthrobacter globiformis strain SAFR-004 
prokMSA_id:78280 Arthrobacter globiformis 
prokMSA_id:78801 Arthrobacter sp. I4 
prokMSA_id:78941 Arthrobacter sp. HJ4 
prokMSA_id:78996 Arthrobacter sp. M4 
2.30.1.9.1.6.1.1610 OTU 1 seq
prokMSA_id:12415 Arthrobacter sp. str. AC-51
2.30.1.9.1.6.1.1684 OTU 2 seqs
prokMSA_id:78533 Varibaculum cambriensis strain CCUG 44998
prokMSA_id:80455 Varibaculum cambriensis strain CCUG 44998T
2.30.1.9.1.6.1.1686 OTU 1 seq
prokMSA_id:85092 Yania halophila strain YIM 70085 
2.30.1.9.1.6.1.1966 OTU 1 seq
prokMSA_id:59890 actinobacterium clone ccspost2208 
2.30.1.9.1.6.2 ARB.AGILIS_SUBGROUP 23 seqs
2.30.1.9.1.6.2.1324 OTU 1 seq
prokMSA_id:68776 Glacial ice CanDirty1 
2.30.1.9.1.6.2.1494 OTU 17 seqs
prokMSA_id:12433 Arthrobacter agilis str. W.O. 219 DSM 20550
prokMSA_id:12436 Arthrobacter S23H2 str. S23H2
prokMSA_id:12437 str. HTA275
prokMSA_id:12439 Arthrobacter agilis str. LV7
prokMSA_id:18132 Arthrobacter sp. 'SMCC ZAT277' 
prokMSA_id:19576 Arthrobacter sp. 'SMCC ZAT031' 
prokMSA_id:60440 Arthrobacter sp. Fa21 
prokMSA_id:61835 actinobacterium clone CLi20 
prokMSA_id:65387 Arthrobacter agilis 
prokMSA_id:68747 Glacial ice G50-TB7 
prokMSA_id:70897 Arthrobacter sp. 19501 
prokMSA_id:71476 Arthrobacter sp
prokMSA_id:72673 Glacial ice G200-C1 
prokMSA_id:72942 Arthrobacter like sp. V4.BS.11 
prokMSA_id:74109 Arthrobacter sp. 19503 
prokMSA_id:85235 Arthrobacter sp
prokMSA_id:85512 Antarctic R-7549 strain R-7549
2.30.1.9.1.6.2.1577 OTU 1 seq
prokMSA_id:77874 Actinobacteridae clone:Rs-N91
2.30.1.9.1.6.2.1582 OTU 1 seq
prokMSA_id:44226 AT425_EubD11 
2.30.1.9.1.6.2.1628 OTU 1 seq
prokMSA_id:12434 Arthrobacter sp. str. IC044
2.30.1.9.1.6.2.1685 OTU 1 seq
prokMSA_id:72484 Hb7-K5 
2.30.1.9.1.6.2.2036 OTU 1 seq
prokMSA_id:12447 Arthrobacter CF-43 str. CF-43
2.30.1.9.1.6.3 ARB.SULFUREUS_SUBGROUP 59 seqs
2.30.1.9.1.6.3.1099 OTU 1 seq
prokMSA_id:12457 Arthrobacter sp. str. MB90
2.30.1.9.1.6.3.1296 OTU 1 seq
prokMSA_id:77943 Actinobacteridae clone:Rs-M66
2.30.1.9.1.6.3.1405 OTU 33 seqs
prokMSA_id:12391 str. B0672. U12224
prokMSA_id:12404 str. RS4. U31487
prokMSA_id:12414 Arthrobacter sp. str. AC-48. X86594
prokMSA_id:12426 str. S7. U31484
prokMSA_id:12431 str. B0686. U12225
prokMSA_id:12443 Arthrobacter ureafaciens str. NC DSM 20126
prokMSA_id:12464 Micrococcus DD75 str. DD75
prokMSA_id:12480 Micrococcus lylae str. JL 178 DSM 20315
prokMSA_id:12483 Micrococcus lylae str. W1IMSNU 50712
prokMSA_id:12489 str. B0629. U12223
prokMSA_id:13406 Corynebacterium sp. str. kpu 002. AB012207
prokMSA_id:13408 Corynebacterium matruchotii CIP 81.82 . X82065
prokMSA_id:17392 clone Hb6-K17 AJ400555
prokMSA_id:18913 #0319-6N24 AF234083
prokMSA_id:28179 #0319-7G2 AF234095
prokMSA_id:28787 Human oral AC69 AF201992
prokMSA_id:33476 Arthrobacter sp. 'SMCC ZAT054' AF197050
prokMSA_id:33821 Arthrobacter sp. 'SMCC G979' AF197035
prokMSA_id:42163 Micrococcus sp. 667-16 
prokMSA_id:45425 Arthrobacter sp. 'SMCC B0518' U87110
prokMSA_id:47592 #0319-2C8 AF234055
prokMSA_id:49962 Micrococcus psychrophilum mRNA 
prokMSA_id:51367 Arthrobacter sp. 'SMCC G963' AF197028
prokMSA_id:52598 Arthrobacter sp. 'SMCC G959' AF197024
prokMSA_id:66789 Arthrobacter sp. PB8 AF500313
prokMSA_id:72427 Arthrobacter sp. 'SMCC G965' AF197030
prokMSA_id:78363 Arthrobacter sp. isolate Py22 AJ271410
prokMSA_id:80189 Arctic sea ice ARK9983 AF468444
prokMSA_id:81633 Arthrobacter sp. clone ckl22 AY080984
prokMSA_id:84837 clone B3 AJ557832
prokMSA_id:90394 Arthrobacter sp. clone 80 AJ577111
prokMSA_id:91129 Arthrobacter sp. pfB10 AY336539
prokMSA_id:91914 KA72 AY345444
2.30.1.9.1.6.3.1452 OTU 1 seq
prokMSA_id:42157 Methylomicrobium sp. 6G 
2.30.1.9.1.6.3.1457 OTU 2 seqs
prokMSA_id:61986 Micrococcus sp. V4.MO.20 
prokMSA_id:80644 Micrococcus sp. P_wp0222 
2.30.1.9.1.6.3.1573 OTU 5 seqs
prokMSA_id:12456 Arthrobacter protophormiae str. M-570 DSM 20168
prokMSA_id:12474 Arthrobacter nicotianae str. 94 DSM 20123
prokMSA_id:17863 Brevibacterium liquefaciens strain DSM 20579
prokMSA_id:45136 Arthrobacter nicotianae strain SB42
prokMSA_id:54177 Psychrophilic marine PS32 complete and -23S intergenic space
2.30.1.9.1.6.3.1620 OTU 1 seq
prokMSA_id:12479 Arthrobacter creatinolyticus str. GIFU 12498 GIFU 12498
2.30.1.9.1.6.3.1889 OTU 1 seq
prokMSA_id:79015 Citricoccus sp. 2216.25.22 
2.30.1.9.1.6.3.2019 OTU 14 seqs
prokMSA_id:12465 unnamed organism
prokMSA_id:12466 Micrococcus luteus str. HN2-11
prokMSA_id:12467 Micrococcus luteus IFO 16250
prokMSA_id:12468 Micrococcus sp. str. 1F-15
prokMSA_id:12469 Micrococcus sp. str. AC-47
prokMSA_id:22419 Micrococcus sp
prokMSA_id:29883 Micrococcus sp. MN 8.1d.1c isolate MN 8.1d.1c
prokMSA_id:42695 Rape rhizosphere cse077 
prokMSA_id:68736 Glacial ice SB19K-1 
prokMSA_id:72015 Blackwater bioreactor BW4 
prokMSA_id:72261 Micrococcus sp. strain LMG-19421
prokMSA_id:77387 Micrococcus luteus strain SAFR-002 
prokMSA_id:78140 Micrococcus luteus strain DSM 20030T
prokMSA_id:83602 Antarctic R-9183 strain R-9183
2.30.1.9.1.6.4 NK.HALOBIA_SUBGROUP 5 seqs
2.30.1.9.1.6.4.1673 OTU 2 seqs
prokMSA_id:23405 sp. Crater Lake isolate 13C1
prokMSA_id:44941 sp. Lake Elmenteita isolate WE2
2.30.1.9.1.6.4.1691 OTU 1 seq
prokMSA_id:12486 str. ML-162
2.30.1.9.1.6.4.1688 OTU 1 seq
prokMSA_id:12485 Nesterenkonia halobia str. 28-3 DSM 20541
2.30.1.9.1.6.4.1751 OTU 1 seq
prokMSA_id:12490 Arthrobacter atrocyaneus DSM 20127
2.30.1.9.1.6.5 ARB.CRYSTALLOPOIETES_SUBGROUP 2 seqs
2.30.1.9.1.6.5.1753 OTU 1 seq
prokMSA_id:12491 Arthrobacter crystallopoietes DSM 20117
2.30.1.9.1.6.5.1756 OTU 1 seq
prokMSA_id:12492 unnamed organism
2.30.1.9.1.6.6 STT.MUCILAGINOSUS_SUBGROUP 13 seqs
2.30.1.9.1.6.6.1212 OTU 6 seqs
prokMSA_id:12496 Actinomyces sp. str. CCUG 25688
prokMSA_id:33563 Rothia sp. CCUG 25688 AJ131122
prokMSA_id:50851 Arthrobacter sp. B10 
prokMSA_id:58299 Rothia sp. ChDC B202 
prokMSA_id:58301 Rothia sp. ChDC B201 
prokMSA_id:59468 Rothia aerius 
2.30.1.9.1.6.6.1724 OTU 2 seqs
prokMSA_id:12497 Stomatococcus mucilaginosus DSM 20746
prokMSA_id:12498 Stomatococcus mucilaginosus str. strain DSM
2.30.1.9.1.6.6.2020 OTU 1 seq
prokMSA_id:58300 Rothia dentocariosa strain ChDC B200 
2.30.1.9.1.6.6.2063 OTU 4 seqs
prokMSA_id:12495 Rothia dentocariosa ATCC 17931
prokMSA_id:58293 Rothia dentocariosa strain ChDC OS32 
prokMSA_id:58302 Rothia dentocariosa strain ChDC B199 AF543277
prokMSA_id:58305 Rothia dentocariosa strain ChDC B198 AF543276
2.30.1.9.1.6.7 KOCURIA_SUBGROUP 19 seqs
2.30.1.9.1.6.7.1168 OTU 1 seq
prokMSA_id:12509 clone Cd10
2.30.1.9.1.6.7.1213 OTU 5 seqs
prokMSA_id:12499 Kocuria rosea DSM 20447
prokMSA_id:12502 Kocuria rosea str. KSE ATCC 187
prokMSA_id:35206 Kocuria polaris strain CMS76or
prokMSA_id:77664 Arthrobacter sp. TUT1004 
prokMSA_id:78055 Arthrobacter sp. TUT1003 
2.30.1.9.1.6.7.1442 OTU 3 seqs
prokMSA_id:27944 Kocuria kristinae AJ316579
prokMSA_id:43126 Kocuria kristinae AF323746
prokMSA_id:65497 Kocuria kristinae strain HAMBI2407 
2.30.1.9.1.6.7.1479 OTU 1 seq
prokMSA_id:21109 Rothia-like sp. CCUG 35957 
2.30.1.9.1.6.7.1529 OTU 1 seq
prokMSA_id:78681 Kocuria sp. 2216.35.31 
2.30.1.9.1.6.7.1554 OTU 4 seqs
prokMSA_id:12500 Micrococcus SMCC ZAT351 SMCC ZAT351
prokMSA_id:12501 Micrococcus SMCC ZAT352 SMCC ZAT352
prokMSA_id:12504 Kocuria palustris str. TAGA27 strain DSM 11925
prokMSA_id:35999 Gram-positive Wuba45 
2.30.1.9.1.6.7.1604 OTU 1 seq
prokMSA_id:24670 Kocuria rhizophila strain RNF1
2.30.1.9.1.6.7.1606 OTU 1 seq
prokMSA_id:12510 clone Cd45
2.30.1.9.1.6.7.1622 OTU 1 seq
prokMSA_id:19877 Kocuria rhizophila strain KL-057 
2.30.1.9.1.6.7.1810 OTU 1 seq
prokMSA_id:37075 Rothia amarae complete 
2.30.1.9.1.6.8 BRB.LINENS_SUBGROUP 13 seqs
2.30.1.9.1.6.8.1140 OTU 1 seq
prokMSA_id:36025 Brevibacterium paucivorans strain CF 62
2.30.1.9.1.6.8.1341 OTU 4 seqs
prokMSA_id:12512 Brevibacterium otitidis str. Marseille 1998-67770 CIP 105044
prokMSA_id:12513 Oerskovia CIP101491 str. 491 CIP 101
prokMSA_id:12514 Brevibacterium otitidis str. A37/73 NCFB 3053 . X93593
prokMSA_id:12518 Brevibacterium sp. D88212
2.30.1.9.1.6.8.1618 OTU 1 seq
prokMSA_id:12515 str. GH443
2.30.1.9.1.6.8.1619 OTU 1 seq
prokMSA_id:12516 Brevibacterium linens NCDO 739
2.30.1.9.1.6.8.1745 OTU 6 seqs
prokMSA_id:12517 Brevibacterium casei NCDO 2048
prokMSA_id:12519 Brevibacterium epidermidis NCDO 2286
prokMSA_id:12520 Brevibacterium iodinum NCDO 613
prokMSA_id:12521 Brevibacterium linens
prokMSA_id:12522 Brevibacterium iodinum
prokMSA_id:20188 Brevibacterium casei strain DSM 20657
2.30.1.9.1.7 DERMATOPHILUS_SUBGROUP 34 seqs
2.30.1.9.1.7.1 BCB.FAECIUM_SUBGROUP 18 seqs
2.30.1.9.1.7.1.1446 OTU 1 seq
prokMSA_id:78446 Brachybacterium sp. C3H-21 strain C3H-21
2.30.1.9.1.7.1.1504 OTU 7 seqs
prokMSA_id:19170 Brachybacterium sacelli isolate LMG 20339
prokMSA_id:29857 Brachybacterium fresconis isolate LMG 20333
prokMSA_id:50941 Brachybacterium fresconis isolate LMG 20336 T
prokMSA_id:70437 Brachybacterium sacelli isolate LMG 20342 AJ415383
prokMSA_id:70869 Brachybacterium sacelli isolate LMG 20345 T
prokMSA_id:73577 Brachybacterium sacelli isolate LMG 20343 AJ415382
prokMSA_id:74355 Brachybacterium sacelli isolate LMG 20338
2.30.1.9.1.7.1.1677 OTU 5 seqs
prokMSA_id:12528 Brachybacterium conglomeratum NCIMB 9859
prokMSA_id:30645 Brachybacterium sp. V589 
prokMSA_id:71795 Brachybacterium paraconglomeratum isolate LMG 19861 T
prokMSA_id:77571 Brachybacterium conglomeratum strain SAFR-049 
prokMSA_id:77876 Brachybacterium paraconglomeratum 
2.30.1.9.1.7.1.1736 OTU 1 seq
prokMSA_id:31079 Brachybacterium rhamnosum isolate LMG 19848 T
2.30.1.9.1.7.1.2028 OTU 3 seqs
prokMSA_id:12524 Microthrix parvicella
prokMSA_id:12525 Microthrix parvicella
prokMSA_id:12527 Microthrix parvicella
2.30.1.9.1.7.1.2053 OTU 1 seq
prokMSA_id:12532 Brachybacterium nesterenkovii DSM 9573
2.30.1.9.1.7.2 DRB.HOMINIS_SUBGROUP 3 seqs
2.30.1.9.1.7.2.1323 OTU 3 seqs
prokMSA_id:12533 Dermabacter hominis DSM 7083
prokMSA_id:12534 Dermabacter hominis NCFB 2769
prokMSA_id:25478 Dermabacter hominis 
2.30.1.9.1.7.3 DER.CONGOLENSIS_SUBGROUP 13 seqs
2.30.1.9.1.7.3.1108 OTU 1 seq
prokMSA_id:52125 Kytococcus sp. Muenster 2000 
2.30.1.9.1.7.3.1389 OTU 1 seq
prokMSA_id:26586 Dermatophilus chelonae DSM 44178 strain
2.30.1.9.1.7.3.1716 OTU 1 seq
prokMSA_id:12537 Dermacoccus nishinomiyaensis DSM 20448
2.30.1.9.1.7.3.1718 OTU 1 seq
prokMSA_id:12538 Demetria terragena str. HKI 0089 DSM 11295
2.30.1.9.1.7.3.1747 OTU 4 seqs
prokMSA_id:19020 actinobacterium clone SBRA95 AF387310
prokMSA_id:19760 actinobacterium clone SBRA375 
prokMSA_id:20014 actinobacterium clone SBRA213 
prokMSA_id:25122 actinobacterium clone SBRA20 
2.30.1.9.1.7.3.1814 OTU 3 seqs
prokMSA_id:12540 Dermatophilus congolensis ATCC 14637
prokMSA_id:12541 Dermatophilus congolensis ATCC 14637
prokMSA_id:18159 Dermatophilus congolensis DSM 44180 strain AJ243918
2.30.1.9.1.7.3.1827 OTU 1 seq
prokMSA_id:33876 Dermatophilus crocodyli 
2.30.1.9.1.7.3.1990 OTU 1 seq
prokMSA_id:62967 clone LPB21 
2.30.1.9.1.8 BG.CASEILYTICA 1 seq
2.30.1.9.1.8.1754 OTU 1 seq
prokMSA_id:12542 Bogoriella caseilytica HKI 0088
2.30.1.9.2 ACTINOMYCES_AND_RELATIVES 169 seqs
2.30.1.9.2.1 ACTINOMYCES_SUBGROUP 94 seqs
2.30.1.9.2.1.1 ACT.VISCOSUS_SUBGROUP 45 seqs
2.30.1.9.2.1.1.1123 OTU 4 seqs
prokMSA_id:22109 human oral A15 
prokMSA_id:43104 human oral A16 
prokMSA_id:44824 human oral A14 
prokMSA_id:92289 Actinomyces sp. oral clone IP073 AY349365
2.30.1.9.2.1.1.1129 OTU 1 seq
prokMSA_id:12548 Actinomyces bovis NCTC 11535
2.30.1.9.2.1.1.1178 OTU 1 seq
prokMSA_id:12560 Actinomyces gerencseriae DSM 6844
2.30.1.9.2.1.1.1183 OTU 1 seq
prokMSA_id:12562 Actinomyces europaeus CCUG 32789A
2.30.1.9.2.1.1.1181 OTU 1 seq
prokMSA_id:12561 Actinomyces denticolens NCTC 11490
2.30.1.9.2.1.1.1227 OTU 22 seqs
prokMSA_id:12545 Actinomyces viscosus NCTC 10951
prokMSA_id:12553 Actinomyces sp. ATCC 49338
prokMSA_id:19228 Actinomyces naeslundii strain CCUG 34285 AJ234050
prokMSA_id:22197 Actinomyces sp. oral clone EP011 
prokMSA_id:23267 Actinomyces sp. strain CCUG 33931
prokMSA_id:27124 Actinomyces viscosus strain CCUG 35332
prokMSA_id:28887 Actinomyces viscosus strain CCUG 33710 AJ234046
prokMSA_id:30901 Actinomyces naeslundii strain CCUG 33914
prokMSA_id:42280 Actinomyces sp. oral clone EP005 
prokMSA_id:45176 Actinomyces naeslundii strain CCUG 34286 clone 1
prokMSA_id:46052 Actinomyces sp. oral clone AG004 
prokMSA_id:46190 Actinomyces sp. oral clone BL008 AF385553
prokMSA_id:47140 Actinomyces viscosus strain CCUG 34288
prokMSA_id:49418 Actinomyces naeslundii AB062278
prokMSA_id:50539 Actinomyces naeslundii strain CCUG 33519
prokMSA_id:58283 Actinomyces sp. ChDC OS47 
prokMSA_id:58292 Actinomyces viscosus 
prokMSA_id:58304 Actinomyces sp. ChDC B197 
prokMSA_id:58541 Actinomyces oricola strain CCUG 46090T
prokMSA_id:71223 Actinomyces sp. oral clone AP064 
prokMSA_id:74701 Actinomyces naeslundii strain strain CCUG 34286 clone 2
prokMSA_id:92445 Actinomyces sp. oral clone JA063 AY349367
2.30.1.9.2.1.1.1368 OTU 3 seqs
prokMSA_id:17127 Actinomyces urogenitalis mRNA 
prokMSA_id:21028 Actinomyces urogenitalis mRNA 
prokMSA_id:40580 Actinomyces urogenitalis 
2.30.1.9.2.1.1.1394 OTU 1 seq
prokMSA_id:24150 Actinomyces bowdenii strain M1956/95/1
2.30.1.9.2.1.1.1508 OTU 1 seq
prokMSA_id:51318 human oral A4 
2.30.1.9.2.1.1.1514 OTU 1 seq
prokMSA_id:27867 human oral A11 
2.30.1.9.2.1.1.1629 OTU 1 seq
prokMSA_id:26223 Actinomyces radicidentis 
2.30.1.9.2.1.1.1649 OTU 2 seqs
prokMSA_id:74646 Actinomyces sp. oral clone DR002 AF385517
prokMSA_id:79234 Actinomyces graevenitzii strain CCUG 27294T
2.30.1.9.2.1.1.1703 OTU 3 seqs
prokMSA_id:12547 Actinomyces slackii NCTC 11923
prokMSA_id:40753 Actinomyces slackii strain CCUG 32792 clone 1
prokMSA_id:49536 Actinomyces slackii strain CCUG 32792 clone 2
2.30.1.9.2.1.1.1755 OTU 1 seq
prokMSA_id:12543 Actinomyces israelii CIP 103259
2.30.1.9.2.1.1.1794 OTU 1 seq
prokMSA_id:23149 Actinomyces sp. oral strain B19SC 
2.30.1.9.2.1.1.1906 OTU 1 seq
prokMSA_id:28461 Actinomyces sp. strain M2231/94/1
2.30.1.9.2.1.2 ACT.NEUII_SUBGROUP 26 seqs
2.30.1.9.2.1.2.1193 OTU 3 seqs
prokMSA_id:44425 Actinomyces sp. CCUG 34479 mRNA 
prokMSA_id:47127 Actinomyces sp. CCUG 41706 mRNA 
prokMSA_id:50842 Actinomyces sp. strain M1429/94/1
2.30.1.9.2.1.2.1231 OTU 1 seq
prokMSA_id:12571 Actinomyces meyeri CIP 103148
2.30.1.9.2.1.2.1636 OTU 4 seqs
prokMSA_id:12569 Actinomyces hyovaginalis NCFB 2983
prokMSA_id:22416 Actinomyces hyovaginalis-like strain P31/96/2 AJ234064
prokMSA_id:47631 Actinomyces hyovaginalis strain UZCOR144
prokMSA_id:94199 Actinomyces hyovaginalis strain E6 AF489585
2.30.1.9.2.1.2.1672 OTU 13 seqs
prokMSA_id:12572 clone HstpL15. AF159688
prokMSA_id:12574 Actinomyces sp. str. APL11
prokMSA_id:18829 Actinomyces sp. strain CCUG 37290
prokMSA_id:23262 Actinomyces odontolyticus strain CCUG 33767
prokMSA_id:25517 Actinomyces odontolyticus strain CCUG 34689
prokMSA_id:28910 Actinomyces odontolyticus strain CCUG 32834
prokMSA_id:41300 Actinomyces sp. oral strain C29KA AF287751
prokMSA_id:45427 Actinomyces odontolyticus strain CCUG 28084
prokMSA_id:52899 Actinomyces odontolyticus strain CCUG 20536T
prokMSA_id:70945 Actinomyces sp. oral clone CT047 
prokMSA_id:71551 Actinomyces sp. oral clone CT068 
prokMSA_id:74130 Actinomyces sp. oral strain Hal-1083 
prokMSA_id:87494 Actinomyces genomosp. C2 AY278611
2.30.1.9.2.1.2.1798 OTU 2 seqs
prokMSA_id:12566 unnamed organism
prokMSA_id:12567 Actinomyces turicensis str. APL10 DSM 9168
2.30.1.9.2.1.2.1883 OTU 2 seqs
prokMSA_id:23235 Actinomyces sp. VA20732_01 
prokMSA_id:72536 Actinomyces funkeii strain CCUG 42773
2.30.1.9.2.1.2.2039 OTU 1 seq
prokMSA_id:60136 Actinomyces sp. CCUG 44997 
2.30.1.9.2.1.4 ACT.HORDEOVULNERIS 1 seq
2.30.1.9.2.1.4.1713 OTU 1 seq
prokMSA_id:12589 Actinomyces hordeovulneris CIP 103149
2.30.1.9.2.1.5 ABC.PYOGENES_SUBGROUP 17 seqs
2.30.1.9.2.1.5.1331 OTU 1 seq
prokMSA_id:33696 Arcanobacterium sp. strain M430/94/2
2.30.1.9.2.1.5.1429 OTU 2 seqs
prokMSA_id:81251 Actinobaculum schaalii strain LL AF487680
prokMSA_id:81857 Actinobaculum schaalii strain PA 
2.30.1.9.2.1.5.1603 OTU 4 seqs
prokMSA_id:12595 Arcanobacterium bernardiae str. LCDC 89-0504 DSM 9152
prokMSA_id:12597 Arcanobacterium pyogenes NCTC 5224
prokMSA_id:29935 Arcanobacterium sp. HJ57-14E strain HJ57-14E
prokMSA_id:47347 Arcanobacterium sp. HJ55-94AV329.2 strain HJ55-94AV329.2
2.30.1.9.2.1.5.1614 OTU 2 seqs
prokMSA_id:12593 Actinobaculum schaalii CCUG 27420
prokMSA_id:12594 Actinobaculum schaalii CCUG 27420
2.30.1.9.2.1.5.1752 OTU 1 seq
prokMSA_id:12590 Arcanobacterium phocae str. M2546/94/1 DSM 10004
2.30.1.9.2.1.5.1764 OTU 1 seq
prokMSA_id:12591 Arcanobacterium haemolyticum str. 53/W/1 NCTC 9697
2.30.1.9.2.1.5.1768 OTU 1 seq
prokMSA_id:12592 Actinobaculum suis DSM 20639
2.30.1.9.2.1.5.1801 OTU 1 seq
prokMSA_id:71888 Actinobaculum massiliae strain CIP 107404 
2.30.1.9.2.1.5.1829 OTU 1 seq
prokMSA_id:19270 Actinomyces hongkongensis 
2.30.1.9.2.1.5.2049 OTU 3 seqs
prokMSA_id:16861 Arcanobacterium sp. CCUG 41704# 
prokMSA_id:24783 Arcanobacterium haemolyticum strain CIP 103370
prokMSA_id:25077 Arcanobacterium sp. CCUG 41705# 
2.30.1.9.2.1.6 JNS.DENITRIFICANS_SUBGROUP 5 seqs
2.30.1.9.2.1.6.1773 OTU 1 seq
prokMSA_id:12598 clone pCON4
2.30.1.9.2.1.6.2000 OTU 4 seqs
prokMSA_id:12599 Jonesia denitrificans
prokMSA_id:12600 Jonesia denitrificans NCTC 10816
prokMSA_id:77730 Jonesia sp. TUT1016 
prokMSA_id:78074 Jonesia sp. TUT1015 
2.30.1.9.2.2 BIFIDOBACTERIUM_SUBGROUP 75 seqs
2.30.1.9.2.2.1 BIF.MINIMUM_SUBGROUP 6 seqs
2.30.1.9.2.2.1.1253 OTU 1 seq
prokMSA_id:24773 Bifidobacterium sp. group II-3 
2.30.1.9.2.2.1.1434 OTU 1 seq
prokMSA_id:19706 Gardnerella vaginalis 
2.30.1.9.2.2.1.1580 OTU 1 seq
prokMSA_id:43993 Bifidobacterium merycicum 
2.30.1.9.2.2.1.1704 OTU 1 seq
prokMSA_id:12604 Bifidobacterium indicum JCM 1302
2.30.1.9.2.2.1.1710 OTU 1 seq
prokMSA_id:12606 Bifidobacterium angulatum str. strain ATCC 27535
2.30.1.9.2.2.1.1977 OTU 1 seq
prokMSA_id:34238 clone p-3348-23G2 
2.30.1.9.2.2.2 BIF.CATENULATUM_SUBGROUP 14 seqs
2.30.1.9.2.2.2.1170 OTU 1 seq
prokMSA_id:49417 Bifidobacterium pseudocatenulatum 
2.30.1.9.2.2.2.1351 OTU 1 seq
prokMSA_id:78797 Bifidobacterium psychroaerophilum 
2.30.1.9.2.2.2.1967 OTU 6 seqs
prokMSA_id:12610 Bifidobacterium pseudocatenulatum str. strain JCM 1200
prokMSA_id:12613 Bifidobacterium dentium ATCC 27534
prokMSA_id:21503 Bifidobacterium catenulatum 
prokMSA_id:29658 Bifidobacterium sp. oral strain A32ED 
prokMSA_id:45910 Bifidobacterium sp. 9B 
prokMSA_id:70122 human infant N55G 
2.30.1.9.2.2.2.2040 OTU 6 seqs
prokMSA_id:12615 Bifidobacterium ruminantium JCM 8222
prokMSA_id:16594 Bifidobacterium adolescentis clone nru-1 
prokMSA_id:22676 Bifidobacterium sp. 15B 
prokMSA_id:30243 Bifidobacterium adolescentis clone nru-5 
prokMSA_id:37674 Bifidobacterium sp. 7B AF275890
prokMSA_id:39484 Bifidobacterium sp. 15A 
2.30.1.9.2.2.3 BIF.BIFIDUM_SUBGROUP 21 seqs
2.30.1.9.2.2.3.1109 OTU 6 seqs
prokMSA_id:12625 Bifidobacterium boum JCM 1211
prokMSA_id:17245 Bifidobacterium sp. group I-3 
prokMSA_id:25225 rumen 3C3d-20 
prokMSA_id:35146 mpn-isolate group 10 
prokMSA_id:42077 rumen 4C3d-16 
prokMSA_id:55846 Bifidobacterium thermacidophilum subsp. suis complete 
2.30.1.9.2.2.3.1276 OTU 1 seq
prokMSA_id:12618 Bifidobacterium thermophilum
2.30.1.9.2.2.3.1290 OTU 1 seq
prokMSA_id:12619 Bifidobacterium inopinatum str. strain DSM 10107
2.30.1.9.2.2.3.1319 OTU 1 seq
prokMSA_id:12620 Bifidobacterium denticolens str. strain DSM 10105
2.30.1.9.2.2.3.1320 OTU 1 seq
prokMSA_id:12621 Bifidobacterium inopinatum str. strain DSM 10107
2.30.1.9.2.2.3.1335 OTU 3 seqs
prokMSA_id:12617 Bifidobacterium bifidum KCTC 3202
prokMSA_id:12624 Bifidobacterium bifidum KCTC 3202
prokMSA_id:12627 Bifidobacterium bifidum DSM 20456
2.30.1.9.2.2.3.1352 OTU 2 seqs
prokMSA_id:17910 Bifidobacterium sp. 65947 
prokMSA_id:63018 Bifidobacterium scardovii strain CCUG 13008
2.30.1.9.2.2.3.1597 OTU 2 seqs
prokMSA_id:12622 Bifidobacterium subtile DSM 20096
prokMSA_id:12623 Bifidobacterium subtile JCM 7109
2.30.1.9.2.2.3.1915 OTU 3 seqs
prokMSA_id:63869 Bifidobacterium urinalis strain CCUG 34444 AJ278695
prokMSA_id:63870 Bifidobacterium urinalis strain CCUG 26938
prokMSA_id:72858 Bifidobacterium sp. oral strain H6-M4 
2.30.1.9.2.2.3.1987 OTU 1 seq
prokMSA_id:70349 Bifidobacterium sp. oral clone CX010 
2.30.1.9.2.2.4 BIF.LACTIS_SUBGROUP 22 seqs
2.30.1.9.2.2.4.1214 OTU 11 seqs
prokMSA_id:12636 Bifidobacterium pseudolongum subsp. globosum JCM 5820
prokMSA_id:12637 Bifidobacterium pseudolongum subsp. pseudolongum JCM 1205
prokMSA_id:69112 Bifidobacterium pseudolongum subsp. globosum strain 1-23-3 A
prokMSA_id:69376 Bifidobacterium pseudolongum subsp. globosum strain 09-25-2 
prokMSA_id:69472 Bifidobacterium pseudolongum subsp. globosum strain 1-25-3 A
prokMSA_id:69681 Bifidobacterium pseudolongum subsp. globosum strain 7#-10-11
prokMSA_id:69743 Bifidobacterium pseudolongum subsp. globosum strain 02-2 AY1
prokMSA_id:70773 Bifidobacterium pseudolongum subsp. globosum strain Fb9 AY16
prokMSA_id:72459 Bifidobacterium pseudolongum subsp. globosum strain MU8 AY16
prokMSA_id:78584 Bifidobacterium pseudolongum subsp. pseudolongum 
prokMSA_id:78906 Bifidobacterium pseudolongum subsp. globosum 
2.30.1.9.2.2.4.1465 OTU 9 seqs
prokMSA_id:12629 Bifidobacterium lactis str. UR1
prokMSA_id:12630 Bifidobacterium sp
prokMSA_id:12631 Bifidobacterium animalis JCM 1190
prokMSA_id:42998 Bifidobacterium animalis 
prokMSA_id:44833 Bifidobacterium animalis strain:YIT 4090 AB050138
prokMSA_id:48030 Bifidobacterium lactis strain:YIT 4121 AB050136
prokMSA_id:51788 Bifidobacterium infantis strain Y1
prokMSA_id:52295 Bifidobacterium animalis strain:YIT 4119
prokMSA_id:71420 B.lactis and 23S 
2.30.1.9.2.2.4.1793 OTU 1 seq
prokMSA_id:12632 Bifidobacterium choerinum ATCC 27686
2.30.1.9.2.2.4.1825 OTU 1 seq
prokMSA_id:12640 Bifidobacterium magnum JCM 8219
2.30.1.9.2.2.5 BIF.INFANTIS_SUBGROUP 12 seqs
2.30.1.9.2.2.5.1444 OTU 3 seqs
prokMSA_id:78555 Bifidobacterium aerophilum 
prokMSA_id:78586 Bifidobacterium aerophilum 
prokMSA_id:87249 Bifidobacteriaceae genomosp. C1 AY278612
2.30.1.9.2.2.5.1835 OTU 2 seqs
prokMSA_id:32427 Butyrate-producing T1-817 
prokMSA_id:72820 human infant S6C 
2.30.1.9.2.2.5.1875 OTU 7 seqs
prokMSA_id:12645 Bifidobacterium infantis ATCC 15697
prokMSA_id:55278 Bifidobacterium longum strain KB 6 
prokMSA_id:56345 Bifidobacterium breve strain JCM 1273 
prokMSA_id:57338 Bifidobacterium infantis strain KB 10 
prokMSA_id:68376 Bifidobacterium breve strain JCM 7019 
prokMSA_id:68379 Bifidobacterium breve strain JCM 7020 
prokMSA_id:71297 Bifidobacterium sp. group III-3 
2.30.1.9.3 KINEOSPORIA_GROUP 37 seqs
2.30.1.9.3.1087 OTU 2 seqs
prokMSA_id:12691 Kineosporia rhamnosa str. I-113 JCM 9953
prokMSA_id:12700 Kineosporia aurantiaca JCM 3230
2.30.1.9.3.1297 OTU 1 seq
prokMSA_id:12689 Kineosporia rhamnosa str. I-132 JCM 9954
2.30.1.9.3.1359 OTU 1 seq
prokMSA_id:12687 unnamed organism
2.30.1.9.3.1396 OTU 1 seq
prokMSA_id:12690 str. G10 dolomite marbel Namibia
2.30.1.9.3.1422 OTU 1 seq
prokMSA_id:12696 Kineosporia rhizophila str. I-449 JCM 9960
2.30.1.9.3.1424 OTU 1 seq
prokMSA_id:12697 str. SR 139
2.30.1.9.3.1598 OTU 1 seq
prokMSA_id:86480 actinobacterium clone FBP402 
2.30.1.9.3.1862 OTU 5 seqs
prokMSA_id:12692 str. AS2988
prokMSA_id:12693 str. AS2987
prokMSA_id:12694 str. AS2978
prokMSA_id:12695 str. AS3187
prokMSA_id:25938 Kineococcus-like AS3138 complete 
2.30.1.9.3.1893 OTU 4 seqs
prokMSA_id:12686 Kineosporia aurantiaca ATCC 29727
prokMSA_id:12688 Kineosporia aurantiaca IFO 14067
prokMSA_id:12699 str. SR 11
prokMSA_id:24568 Kineosporia aurantiaca 
2.30.1.9.3.1896 OTU 1 seq
prokMSA_id:12663 Kineococcus aurantiacus IFO 15268
2.30.1.9.3.1897 OTU 1 seq
prokMSA_id:12665 Kineococcus aurantiacus IFO 15268
2.30.1.9.3.1961 OTU 18 seqs
prokMSA_id:12664 Kineococcus aurantiacus IFO 15268
prokMSA_id:12666 str. AS2989
prokMSA_id:12667 str. AS2960
prokMSA_id:12668 str. AS2964
prokMSA_id:12669 str. AS2965
prokMSA_id:12670 str. AS2985
prokMSA_id:12671 str. AS2953
prokMSA_id:12672 str. AS3041
prokMSA_id:12673 str. AS3042
prokMSA_id:12675 str. AS3080
prokMSA_id:12676 str. AS3088
prokMSA_id:12677 str. AS3090
prokMSA_id:12679 str. AS3148
prokMSA_id:12680 str. AS3380
prokMSA_id:12682 str. AS3382
prokMSA_id:12683 str. AS3630
prokMSA_id:12684 str. AS3635
prokMSA_id:33896 Kineococcus-like str. AS3642 
2.30.1.9.4 THERMOCRISPUM_GROUP 2 seqs
2.30.1.9.4.1271 OTU 1 seq
prokMSA_id:12701 Thermocrispum municipale str. MKD 35 DSM 44069
2.30.1.9.4.1563 OTU 1 seq
prokMSA_id:46191 Actinomyces sp. CCUG 41708 
2.30.1.10 PROPIONIBACTERIUM_GROUP 120 seqs
2.30.1.10.1 PRP.ACNES_SUBGROUP 37 seqs
2.30.1.10.1.2002 OTU 37 seqs
prokMSA_id:12709 Propionibacterium acnes str. 63597. AF145256
prokMSA_id:12710 Propionibacterium acnes str. 76995
prokMSA_id:12711 Propionibacterium acnes str. MZ 169082. AF154832
prokMSA_id:12712 Propionibacterium acnes str. LIP4. Y12288
prokMSA_id:12713 clone BPC009. AF154099
prokMSA_id:12714 Propionibacterium acnes. AF076032
prokMSA_id:16987 Propionibacterium acnes isolate:#7168 AB042289
prokMSA_id:17399 Propionibacterium acnes isolate:#1447 AB041617
prokMSA_id:18812 Propionibacterium acnes isolate:#8261 AB042291
prokMSA_id:20375 sheep mite Llangefni 35 AF290481
prokMSA_id:23665 Propionibacterium acnes isolate:0432 AB042286
prokMSA_id:25486 Red Sea KT-2K12 AJ309523
prokMSA_id:26332 Propionibacterium acnes isolate:#4584 AB042287
prokMSA_id:26462 Propionibacterium acnes isolate:#3004 and #7256 AB041618
prokMSA_id:29154 Propionibacterium acnes isolate:#7375 AB042290
prokMSA_id:32473 Propionibacterium acnes ATCC6919 AB042288
prokMSA_id:34150 species isolate Boom-3m-08 Z73442
prokMSA_id:37223 sheep mite Llangefni 57 AF290482
prokMSA_id:37428 Propionibacteriaceae str. K4 
prokMSA_id:43212 Red Sea KT-2K38 AJ309527
prokMSA_id:62481 Propionibacterineae clone PH-B24N AF513962
prokMSA_id:66602 Propionibacterium sp. WJ6 AY096033
prokMSA_id:70065 a2b011 AF419680
prokMSA_id:75115 earthworm intestine clone lw29 AY154545
prokMSA_id:75387 Propionibacterium acnes complete AB097215
prokMSA_id:78295 actinobacterium clone:APe2_6 AB074624
prokMSA_id:82570 Propionibacterium acnes isolate: #5317 AB108480
prokMSA_id:83144 Propionibacterium acnes isolate: #2929 AB108484
prokMSA_id:83740 Propionibacterium acnes isolate: #1003 AB108483
prokMSA_id:85076 Propionibacterium acnes isolate: #6119 AB108479
prokMSA_id:85285 Propionibacterium acnes isolate: #5255 AB108482
prokMSA_id:85289 Propionibacterium acnes isolate: #8800 AB108481
prokMSA_id:86231 Propionibacterium acnes isolate: #8644 AB108477
prokMSA_id:88922 clone O-F-20 AF443577
prokMSA_id:89757 clone O-F-15 AF443576
prokMSA_id:92471 Propionibacterium sp. LG AY354921
prokMSA_id:93056 Propionibacterium acnes B15 AY343975
2.30.1.10.2 PRP.THOENII_SUBGROUP 3 seqs
2.30.1.10.2.1291 OTU 1 seq
prokMSA_id:49248 Propionibacterium microaerophilus 
2.30.1.10.2.1371 OTU 2 seqs
prokMSA_id:12724 Propionibacterium granulosum DSM 20700
prokMSA_id:33816 AT425_EubA8 
2.30.1.10.3 PRP.FREUDENREICHII_SUBGROUP 5 seqs
2.30.1.10.3.1152 OTU 1 seq
prokMSA_id:73295 Propionibacterium sp. oral strain FMA5 
2.30.1.10.3.1715 OTU 2 seqs
prokMSA_id:12727 Propionibacterium freudenreichii subsp. shermanii str. E11.1
prokMSA_id:12729 Propionibacterium freudenreichii subsp. globosum str. JS53
2.30.1.10.3.1808 OTU 1 seq
prokMSA_id:12728 Propionibacterium cyclohexanicum
2.30.1.10.3.1981 OTU 1 seq
prokMSA_id:23815 Propionibacterium sp. LCDC-98A072 
2.30.1.10.5 TSC.BENDIGOENSIS 4 seqs
2.30.1.10.5.1850 OTU 1 seq
prokMSA_id:12733 Tessaracoccus bendigoensis str. Ben106 ACM 5119
2.30.1.10.5.2023 OTU 3 seqs
prokMSA_id:17374 Propionibacterium propionicus 
prokMSA_id:18155 Propionibacterium propionicus strain DSM 43307T
prokMSA_id:19216 Propionibacterium sp. oral clone BN085 
2.30.1.10.6 PRP.LYMPHOPHILUM_SUBGROUP 1 seq
2.30.1.10.6.1865 OTU 1 seq
prokMSA_id:12734 Propionibacterium lymphophilum DSM 4903
2.30.1.10.7 LUT.JAPONICUS_SUBGROUP 1 seq
2.30.1.10.7.1877 OTU 1 seq
prokMSA_id:12738 Luteococcus japonicus IFO 12422
2.30.1.10.9 MCL.PHOSPHOVORUS_SUBGROUP 12 seqs
2.30.1.10.9.1306 OTU 1 seq
prokMSA_id:12751 str. Lg2
2.30.1.10.9.1307 OTU 1 seq
prokMSA_id:12752 str. clone koll13
2.30.1.10.9.1315 OTU 2 seqs
prokMSA_id:12743 Friedmanniella capsulatus str. Ben 108; J47 ACM 5120
prokMSA_id:47043 Friedmanniella sp. EL-17a 
2.30.1.10.9.1623 OTU 1 seq
prokMSA_id:31964 Actinobacterium K2 
2.30.1.10.9.1777 OTU 2 seqs
prokMSA_id:12741 Friedmanniella antarctica str. AA-1042 DSM 11053
prokMSA_id:12742 Friedmanniella spumicola str. Ben 107 ACM 5121
2.30.1.10.9.1842 OTU 4 seqs
prokMSA_id:12753 str. VeSm15
prokMSA_id:22433 Marine R2A170 U78941
prokMSA_id:72755 Microbacterium sp. clone LTUGr00156 AY149469
prokMSA_id:82323 actinobacterium clone VC20 
2.30.1.10.9.1933 OTU 1 seq
prokMSA_id:48003 sp. sbr-gs28 
2.30.1.10.10 ARMB.FASTIDIOSUM_SUBGROUP 7 seqs
2.30.1.10.10.1208 OTU 5 seqs
prokMSA_id:12756 Aeromicrobium fastidiosum DSM 10552
prokMSA_id:12757 Nocardioides sp. NCFB 3007
prokMSA_id:12758 Nocardioides sp. NCFB 3005
prokMSA_id:12760 Aeromicrobium erythreum NRRL B-3381
prokMSA_id:39886 Aeromicrobium fastidiosum 
2.30.1.10.10.1602 OTU 1 seq
prokMSA_id:26274 clone 404-2 
2.30.1.10.10.1854 OTU 1 seq
prokMSA_id:84596 Aeromicrobium marinum 
2.30.1.10.11 NCR.ALBUS_SUBGROUP 39 seqs
2.30.1.10.11.1185 OTU 1 seq
prokMSA_id:68678 1152 bp
2.30.1.10.11.1254 OTU 1 seq
prokMSA_id:34725 Nocardioides sp. LMG 20237 strain LMG 20237
2.30.1.10.11.1269 OTU 1 seq
prokMSA_id:44269 Nocardioides sp. C157 
2.30.1.10.11.1328 OTU 2 seqs
prokMSA_id:12761 Nocardioides plantarum str. Grainger J70 NCIMB 12834
prokMSA_id:12788 Nocardioides plantarum DSM 11054 . Z78211
2.30.1.10.11.1364 OTU 1 seq
prokMSA_id:12770 clone Nb
2.30.1.10.11.1423 OTU 26 seqs
prokMSA_id:12789 Nocardioides albus KCTC 9186 . AF004988
prokMSA_id:12793 Nocardioides sp. str. 15-59
prokMSA_id:12794 Nocardioides sp. str. 30-71. X86618
prokMSA_id:12795 Nocardioides sp. str. 80-80. X86619
prokMSA_id:12796 Nocardioides sp. str. 80-83. X86620
prokMSA_id:23823 Nocardioides luteus AF005007
prokMSA_id:24003 Nocardioides albus AF004989
prokMSA_id:25935 Nocardioides albus AF005004
prokMSA_id:26246 Nocardioides albus AF004996
prokMSA_id:27416 Nocardioides albus AF004992
prokMSA_id:29505 Nocardioides albus AF004993
prokMSA_id:31018 Nocardioides albus AF004999
prokMSA_id:34255 Nocardioides albus AF004995
prokMSA_id:35067 Nocardioides albus AF004997
prokMSA_id:35182 Nocardioides albus AF004991
prokMSA_id:38492 Nocardioides albus AF005000
prokMSA_id:38858 Nocardioides albus AF004998
prokMSA_id:43015 Nocardioides albus AF005002
prokMSA_id:44064 Nocardioides flavus AF005015
prokMSA_id:44488 Nocardioides albus AF005003
prokMSA_id:45362 Nocardioides flavus AF005014
prokMSA_id:45925 Nocardioides albus AF005001
prokMSA_id:46696 Nocardioides fulvus AF005016
prokMSA_id:48672 Nocardioides albus AF005005
prokMSA_id:74487 Nocardioides albus AF004994
prokMSA_id:74703 Nocardioides albus AF004990
2.30.1.10.11.1426 OTU 1 seq
prokMSA_id:82319 Nocardioides sp. NS/27 strain NS/27
2.30.1.10.11.1796 OTU 1 seq
prokMSA_id:75390 Nocardioides sp. 4P1-A 
2.30.1.10.11.1823 OTU 2 seqs
prokMSA_id:12762 Nocardioides sp. str. EL-17 lawson
prokMSA_id:12763 Nocardioides sp
2.30.1.10.11.1900 OTU 1 seq
prokMSA_id:83955 Actinobacteridae clone ACF6
2.30.1.10.11.1905 OTU 1 seq
prokMSA_id:32247 Marmoricola aurantiacus 
2.30.1.10.11.2005 OTU 1 seq
prokMSA_id:61958 Nocardioides sp. V4.BO.15 
2.30.1.10.12 KRIBBELLA_SUBGROUP 11 seqs
2.30.1.10.12.1275 OTU 1 seq
prokMSA_id:12805 clone PENDANT-22
2.30.1.10.12.1839 OTU 10 seqs
prokMSA_id:12801 Kribbella flavida IFO 14399 . AF005017
prokMSA_id:12803 Hongia koreensis str. LM 161T =IMSNU 50530T
prokMSA_id:12804 Kribbella sandramycini ATCC 39419 . AF005020
prokMSA_id:33303 Nocardioidaceae str. IM-7091 
prokMSA_id:44933 Nocardioidaceae str. IM-7757 AF131634
prokMSA_id:45801 Nocardioidaceae str. IM-7029 AF131632
prokMSA_id:48151 Nocardioidaceae str. IM-7770 
prokMSA_id:55745 Nocardioides sp. YIM31075 AY082062
prokMSA_id:55832 Nocardioides sp. YIM31530 
prokMSA_id:68399 Nocardioides sp. YIM30006 AY082061
2.30.1.11 MICROMONOSPORA_GROUP 210 seqs
2.30.1.11.2 PLM.TEREVASA_SUBGROUP 4 seqs
2.30.1.11.2.1462 OTU 4 seqs
prokMSA_id:12807 Pilimelia anulata DSM 43039
prokMSA_id:12808 Pilimelia terevasa DSM 43040
prokMSA_id:12809 Pilimelia terevasa IFO 15964
prokMSA_id:72263 Pilimelia terevasa strain IFO15964 
2.30.1.11.3 APL.PHILIPPINENSIS_SUBGROUP 24 seqs
2.30.1.11.3.1092 OTU 1 seq
prokMSA_id:26880 clone 33-PA134B99 
2.30.1.11.3.1309 OTU 1 seq
prokMSA_id:53290 actinobacterium MB11A03 and 23S genes 
2.30.1.11.3.1488 OTU 11 seqs
prokMSA_id:12810 Actinoplanes philippinensis DSM 43019
prokMSA_id:12811 Actinoplanes philippinensis IFO 13878
prokMSA_id:12815 Actinoplanes philippinensis ATCC 12427
prokMSA_id:12816 Actinoplanes auranticolor IFO 12245
prokMSA_id:20207 Actinoplanes utahensis strain IMSNU 20044T
prokMSA_id:24378 Actinoplanes sarveparensis 
prokMSA_id:28575 Actinoplanes sp. IFO 14460 
prokMSA_id:36425 Actinoplanes campanulatus 
prokMSA_id:36612 Actinoplanes sp. IFO 14265 
prokMSA_id:51900 Actinoplanes utahensis 
prokMSA_id:71458 Actinoplanes philippinensis strain IFO13878 
2.30.1.11.3.1675 OTU 3 seqs
prokMSA_id:12813 clone OCS155
prokMSA_id:54456 actinobacterium MB11C06 and 23S genes 
prokMSA_id:60634 firmicute clone AEGEAN_193 
2.30.1.11.3.1732 OTU 1 seq
prokMSA_id:60632 firmicute clone AEGEAN_163 
2.30.1.11.3.1760 OTU 5 seqs
prokMSA_id:18388 Actinoplanes sp. IFO 14264 
prokMSA_id:26671 Actinoplanes purpeobrunneus 
prokMSA_id:28089 Actinoplanes purpeobrunneus strain IMSNU 22130
prokMSA_id:36605 Actinoplanes roseosporangius 
prokMSA_id:51486 Actinoplanes roseosporangius strain IMSNU 22133
2.30.1.11.3.1910 OTU 1 seq
prokMSA_id:12817 Actinoplanes capillaceus str. K95-5561
2.30.1.11.3.1942 OTU 1 seq
prokMSA_id:72061 gamma clone AEGEAN_195 
2.30.1.11.4 APL.UTAHENSIS_SUBGROUP 26 seqs
2.30.1.11.4.1542 OTU 5 seqs
prokMSA_id:12818 Actinoplanes cyaneus DSM 46137
prokMSA_id:12819 str. SR 83
prokMSA_id:21002 Actinoplanes cyaneus 
prokMSA_id:27565 Actinoplanes garbadinensis 
prokMSA_id:37443 Actinoplanes garbadinensis strain IMSNU 20040
2.30.1.11.4.1615 OTU 13 seqs
prokMSA_id:12820 Actinoplanes regularis DSM 43151
prokMSA_id:17991 Actinoplanes sp. IFO 13943 
prokMSA_id:24733 Actinoplanes italicus 
prokMSA_id:26230 Actinoplanes italicus complete 
prokMSA_id:32651 Actinoplanes derwentensis 
prokMSA_id:33156 Actinoplanes penicillatus strain IMSNU 22129
prokMSA_id:36834 Actinoplanes sp. IFO 14066 
prokMSA_id:39135 Actinoplanes arizonaensis 
prokMSA_id:44805 Actinoplanes sp. IFO 13944 
prokMSA_id:45208 Actinoplanes kinshanensis 
prokMSA_id:49393 Actinoplanes regularis 
prokMSA_id:51035 Actinoplanes derwentensis 
prokMSA_id:84117 Actinoplanes sp. strain 96
2.30.1.11.4.1633 OTU 7 seqs
prokMSA_id:22339 Actinoplanes tuftoflagellus strain IMSNU 22135
prokMSA_id:23680 Actinoplanes digitatis strain IMSNU 22123T
prokMSA_id:31721 Actinoplanes derwentensis strain IMSNU 20027T
prokMSA_id:37247 Actinoplanes rutilosporangius 
prokMSA_id:39832 Actinoplanes pallidoaurantiacus strain IMSNU 22128
prokMSA_id:44085 Actinoplanes missouriensis strain IMSNU 22051T
prokMSA_id:46305 Actinoplanes pyriformis strain IMSNU 22131
2.30.1.11.4.1931 OTU 1 seq
prokMSA_id:12821 Actinoplanes utahensis str. Bayer AG SE50/110 ATCC 31044
2.30.1.11.5 CATENULOPLANES_SUBGROUP 24 seqs
2.30.1.11.5.1 CAT.JAPONICUS_SUBGROUP 2 seqs
2.30.1.11.5.1.1395 OTU 1 seq
prokMSA_id:12825 Catenuloplanes japonicus IFO 14176
2.30.1.11.5.1.1414 OTU 1 seq
prokMSA_id:12826 Catenuloplanes japonicus str. RA330
2.30.1.11.5.2 GM.TENUIS_SUBGROUP 10 seqs
2.30.1.11.5.2.1421 OTU 1 seq
prokMSA_id:12829 Planopolyspora crispa JCM 9312
2.30.1.11.5.2.1870 OTU 1 seq
prokMSA_id:12831 Glycomyces tenuis IFO 15904
2.30.1.11.5.2.1938 OTU 3 seqs
prokMSA_id:12832 Glycomyces harbinensis str. LL-DO5139 IFO 14487
prokMSA_id:33446 Glycomyces harbinensis strain IMSNU 20070T
prokMSA_id:42225 Glycomyces rutgersensis strain IMSNU 22074T
2.30.1.11.5.2.1972 OTU 5 seqs
prokMSA_id:12828 Catenuloplanes japonicus DSM 44102
prokMSA_id:12830 Catenuloplanes japonicus IFO 14176
prokMSA_id:41503 Actinoplanes regularis 
prokMSA_id:77587 Catenuloplanes atrovinosus strain IMSNU 22012T
prokMSA_id:78124 Catenuloplanes indicus strain IMSNU 22099T
2.30.1.11.5.3 CCP.CAERULEUS_SUBGROUP 12 seqs
2.30.1.11.5.3.1316 OTU 3 seqs
prokMSA_id:38986 Actinoplanes globisporus 
prokMSA_id:40065 Actinoplanes globisporus strain IMSNU 20030T AJ277570
prokMSA_id:52031 Actinoplanes globisporus 
2.30.1.11.5.3.1689 OTU 2 seqs
prokMSA_id:12834 Actinoplanes brasiliensis DSM 43805
prokMSA_id:17380 Actinoplanes yunnanensis 
2.30.1.11.5.3.1876 OTU 1 seq
prokMSA_id:12835 Couchioplanes caeruleus subsp. caeruleus IFO 13939
2.30.1.11.5.3.2051 OTU 6 seqs
prokMSA_id:12836 Couchioplanes caeruleus subsp. caeruleus IFO 13939
prokMSA_id:12837 Catenuloplanes caeruleus subsp. azureus DSM 44103
prokMSA_id:12838 Couchioplanes caeruleus subsp. azureus IFO 13993
prokMSA_id:40127 Actinoplanes auranticolor 
prokMSA_id:46296 Actinoplanes sp. IFO 14428 
prokMSA_id:52136 Actinoplanes teichomyceticus strain IMSNU 20043 AJ277584
2.30.1.11.6 SP.YAMANASHIENSIS 1 seq
2.30.1.11.6.1890 OTU 1 seq
prokMSA_id:12839 Spirilliplanes yamanashiensis str. YU127-1 IFO 15828
2.30.1.11.8 MMS.OLIVASTEROSPORA_SUBGROUP 16 seqs
2.30.1.11.8.1120 OTU 15 seqs
prokMSA_id:19482 Actinoplanes digitatis 
prokMSA_id:23936 Actinoplanes humidus complete AB037004
prokMSA_id:24528 Actinoplanes digitatis 
prokMSA_id:27800 Actinoplanes violaceus strain IMSNU 22136
prokMSA_id:39010 Actinoplanes consettensis AB036996
prokMSA_id:41400 Actinoplanes missouriensis 
prokMSA_id:49242 Actinoplanes nipponensis 
prokMSA_id:51111 Actinoplanes consettensis AB048214
prokMSA_id:51864 Actinoplanes violaceus 
prokMSA_id:64357 Actinoplanes sp. YM-3 
prokMSA_id:83420 Actinoplanes sp. strain 20
prokMSA_id:84068 Actinoplanes sp. strain 19
prokMSA_id:84925 Actinoplanes sp. strain 46
prokMSA_id:85492 Actinoplanes sp. strain 159
prokMSA_id:93220 Verrucosispora sp. e37 AY360149
2.30.1.11.8.1727 OTU 1 seq
prokMSA_id:44279 Catellatospora koreensis 
2.30.1.11.9 MMS.ECHINOSPORA_SUBGROUP 75 seqs
2.30.1.11.9.1088 OTU 1 seq
prokMSA_id:58318 clone ASL8 
2.30.1.11.9.1159 OTU 72 seqs
prokMSA_id:12840 Verrucosispora gifhornensis str. HR1-2 DSM 44337
prokMSA_id:12841 Micromonospora olivasterospora str. MK70 DSM 43868
prokMSA_id:12842 Micromonospora peucetica str. DSM 43363 strain
prokMSA_id:12843 Micromonospora purpureochromogenes DSM 43821
prokMSA_id:12844 Micromonospora narashino str. DSM 43172
prokMSA_id:12845 Micromonospora brunnescens str. DSM 43902 strain
prokMSA_id:12847 Micromonospora globosa str. DSM 43893
prokMSA_id:12848 Micromonospora halophytica subsp. halophytica
prokMSA_id:12849 Micromonospora chersinia DSM 44151
prokMSA_id:12850 Micromonospora citrea str. DSM 43903
prokMSA_id:12851 Micromonospora echinobrunnea str. DSM 43913
prokMSA_id:12852 Micromonospora coerulea DSM 43143
prokMSA_id:12853 Micromonospora echinospora subsp. echinospora DSM 43816
prokMSA_id:12854 Micromonospora fulviviridis str. DSM 43906
prokMSA_id:12855 Micromonospora aurantiaca DSM 43813
prokMSA_id:12856 Micromonospora aurantiaca str. W2b
prokMSA_id:12857 Micromonospora fulvopurpureus str. DSM 43918
prokMSA_id:12858 Micromonospora globosa str. DSM 43170
prokMSA_id:12859 Micromonospora lacustris str. DSM 43908
prokMSA_id:12860 Micromonospora chalcea DSM 43026
prokMSA_id:12862 Micromonospora chalcea IFO 12135
prokMSA_id:12863 Micromonospora chalcea ATCC 12452
prokMSA_id:12864 Micromonospora brunnea DSM 43814
prokMSA_id:12865 Micromonospora rosaria DSM 803
prokMSA_id:12866 Micromonospora rhodorangea DSM 43822
prokMSA_id:12867 Micromonospora inositola DSM 43819
prokMSA_id:12868 Micromonospora halophytica subsp. nigra DSM 43818
prokMSA_id:12870 Micromonospora echinospora subsp. ferruginea DSM 43141
prokMSA_id:12871 Micromonospora sagamiensis subsp. sagamiensis str. DSM 43912
prokMSA_id:12872 Micromonospora echinoaurantiaca str. DSM 44390
prokMSA_id:12873 Micromonospora inyoensis str. DSM 46123
prokMSA_id:12874 Micromonospora purpurea DSM 43036
prokMSA_id:12875 Micromonospora melanospora str. DSM 43126
prokMSA_id:12876 Frankia sp. str. G48
prokMSA_id:12877 Micromonospora echinospora subsp. pallida DSM 43817
prokMSA_id:12878 Micromonospora viridifaciens str. DSM 43909
prokMSA_id:12879 Micromonospora carbonacea subsp. carbonacea DSM 43168
prokMSA_id:12880 Micromonospora Y10 str. Y10
prokMSA_id:12883 Micromonospora floridensis str. DSM 43907
prokMSA_id:12884 str. SR 53
prokMSA_id:12885 Micromonospora carbonacea subsp. aurantiaca
prokMSA_id:22701 Actinoplanes ferrugineus strain IMSNU 22125T
prokMSA_id:23551 Actinoplanes deccanensis 
prokMSA_id:30667 Actinoplanes ferrugineus 
prokMSA_id:41171 Actinoplanes ferrugineus 
prokMSA_id:42214 Micromonospora sp. 0138 
prokMSA_id:43093 Actinoplanes durhamensis strain IMSNU 22124T
prokMSA_id:44122 Actinoplanes deccanensis strain IMSNU 20026T
prokMSA_id:44843 Micromonospora matsumotoense 
prokMSA_id:51187 Actinoplanes durhamensis 
prokMSA_id:52270 Actinoplanes humidus strain IMSNU 22051T
prokMSA_id:52957 Actinoplanes durhamensis 
prokMSA_id:56010 Micromonospora sp. CNH512 
prokMSA_id:59319 Micromonospora sp. CNH394 
prokMSA_id:68757 Glacial ice G200-C39 
prokMSA_id:78090 Catellatospora ishikariense strain IMSNU 22004
prokMSA_id:82514 Micromonospora endolithica strain DSM 44398T
prokMSA_id:82848 Micromonospora sp. N0075 AY221487
prokMSA_id:83827 Micromonospora sp. N0179 AY221503
prokMSA_id:83918 Micromonospora sp. N0072 AY221484
prokMSA_id:84504 Micromonospora sp. N0074 AY221486
prokMSA_id:84757 Micromonospora sp. N0152 AY221493
prokMSA_id:84817 Micromonospora sp. N0088 AY221489
prokMSA_id:85111 Micromonospora sp. N0163 AY221501
prokMSA_id:85320 Micromonospora sp. N0156 AY221496
prokMSA_id:85587 Micromonospora sp. N0093 AY221490
prokMSA_id:85915 Micromonospora sp. N0168 AY221502
prokMSA_id:88326 Micromonospora sp. 40010 AY295799
prokMSA_id:93232 Micromonospora sp. e3 AY360151
prokMSA_id:93360 Micromonospora sp. e32 AY360159
prokMSA_id:93720 Verrucosispora sp. e80 AY360150
prokMSA_id:94058 Micromonospora sp. e4 AY360152
2.30.1.11.9.1830 OTU 1 seq
prokMSA_id:12861 clone TM214
2.30.1.11.9.1847 OTU 1 seq
prokMSA_id:30373 Actinoplanes sp. IM-4188 
2.30.1.11.10 MMS.CARBONACEA_SUBGROUP 4 seqs
2.30.1.11.10.1641 OTU 4 seqs
prokMSA_id:12881 Micromonospora yulongensis str. DSM 43915
prokMSA_id:12882 Micromonospora fulvoviolaceus str. DSM 43905
prokMSA_id:83284 Micromonospora sp. N0161 
prokMSA_id:93558 Micromonospora sp. e7 AY360154
2.30.1.11.11 CTL.FERRUGINEA 3 seqs
2.30.1.11.11.1722 OTU 3 seqs
prokMSA_id:12886 Catellatospora ferruginea DSM 44099
prokMSA_id:27139 Catellatospora sp. IM-6046 AF131355
prokMSA_id:38053 Catellatospora ferruginea 
2.30.1.11.12 CTL.CITREA_SUBGROUP 10 seqs
2.30.1.11.12.1285 OTU 2 seqs
prokMSA_id:12890 Catellatospora tsunoense DSM 44101
prokMSA_id:42584 Catellatospora tsunoense 
2.30.1.11.12.1821 OTU 7 seqs
prokMSA_id:12887 Catellatospora citrea DSM 44098
prokMSA_id:12888 Catellatospora citrea subsp. citrea IFO 14495
prokMSA_id:12889 Catellatospora citrea subsp. citrea DSM 44097
prokMSA_id:34467 Catellatospora sp
prokMSA_id:35366 Catellatospora citrea subsp. citrea 
prokMSA_id:46148 Catellatospora citrea subsp. methionotrophica 
prokMSA_id:74352 Catellatospora citrea strain IFO14495 
2.30.1.11.12.1997 OTU 1 seq
prokMSA_id:45550 Catellatospora sp. IM-7774 
2.30.1.11.13 DCT.AURANTIACUM_SUBGROUP 23 seqs
2.30.1.11.13.1219 OTU 1 seq
prokMSA_id:12902 Dactylosporangium thailandense DSM 43158
2.30.1.11.13.1572 OTU 4 seqs
prokMSA_id:28171 Virgosporangium aurantiacum strain:YU438-5
prokMSA_id:34942 Virgosporangium ochraceum strain:YU793-41
prokMSA_id:37925 Virgosporangium ochraceum strain:YU794-41
prokMSA_id:52890 Virgosporangium ochraceum strain:YU655-43
2.30.1.11.13.1750 OTU 6 seqs
prokMSA_id:12891 Dactylosporangium vinaceum IFO 14181
prokMSA_id:12900 Dactylosporangium matsuzakiense DSM 43810
prokMSA_id:12904 Dactylosporangium matsuzakiense IFO 14259
prokMSA_id:12906 Dactylosporangium vinaceum DSM 43823
prokMSA_id:26254 Actinomycete SF2809 complete 
prokMSA_id:70854 Dactylosporangium vinaceum strain IFO14181 D86939
2.30.1.11.13.1770 OTU 6 seqs
prokMSA_id:12893 Dactylosporangium roseum IFO 14352
prokMSA_id:12898 Dactylosporangium fulvum IFO 14381
prokMSA_id:12899 Dactylosporangium roseum IFO 14352
prokMSA_id:12903 Dactylosporangium roseum DSM 43916
prokMSA_id:12907 Dactylosporangium fulvum DSM 43917
prokMSA_id:71488 Dactylosporangium roseum strain IFO14352 
2.30.1.11.13.1766 OTU 6 seqs
prokMSA_id:12892 Dactylosporangium aurantiacum str. D-748 ATCC 23491
prokMSA_id:12895 Dactylosporangium aurantiacum str. D-748 IFO 12592
prokMSA_id:12896 Dactylosporangium "salmoneum" DSM 43910
prokMSA_id:12897 Dactylosporangium "salmoneum" IFO 14103
prokMSA_id:12905 Dactylosporangium aurantiacum str. D-748 DSM 43157
prokMSA_id:73463 Dactylosporangium auranticum strain IFO12592 D85480
2.30.1.12 SACCHAROPOLYSPORA_GROUP 198 seqs
2.30.1.12.1 PSC.HALOPHOBICA_SUBGROUP 41 seqs
2.30.1.12.1.1202 OTU 1 seq
prokMSA_id:33771 Pseudonocardia sp. IM-6071 
2.30.1.12.1.1326 OTU 8 seqs
prokMSA_id:12920 Pseudonocardia compacta DSM 43592 . X76959
prokMSA_id:12922 Pseudonocardia alni str. 3LS DSM 44104
prokMSA_id:17516 Pseudonocardia alni strain IMSNU 20049T
prokMSA_id:43762 Pseudonocardia autotrophica strain IMSNU 20050T
prokMSA_id:51374 Pseudonocardia compacta strain IMSNU 20111T
prokMSA_id:74545 Pseudonocardia sp. strain IMSNU 22071 AJ252831
prokMSA_id:82726 Pseudonocardiaceae T4 
prokMSA_id:88738 Pseudonocardia antarctica strain DVS 5a1T AJ576010
2.30.1.12.1.1346 OTU 1 seq
prokMSA_id:12923 str. SR 244a
2.30.1.12.1.1362 OTU 1 seq
prokMSA_id:12926 Pseudonocardia asaccharolytica str. 580 DSM 44247
2.30.1.12.1.1402 OTU 1 seq
prokMSA_id:17003 Actinobispora alaniniphila 
2.30.1.12.1.1530 OTU 1 seq
prokMSA_id:44587 Pseudonocardia thermophila strain IMSNU 20112T
2.30.1.12.1.1528 OTU 1 seq
prokMSA_id:35897 clone t001 
2.30.1.12.1.1607 OTU 1 seq
prokMSA_id:18239 Actinobispora xinjiangensis 
2.30.1.12.1.1863 OTU 22 seqs
prokMSA_id:12913 Pseudonocardia halophobica DSM 43089
prokMSA_id:12916 Actinobispora yunnanensis IFO 15681
prokMSA_id:12927 Pseudonocardia halophobica DSM 43089
prokMSA_id:12930 Pseudonocardia sulfidoxydans str. 592 DSM 44248
prokMSA_id:12931 Pseudonocardia K1 str. K1. AJ249200
prokMSA_id:12934 Actinobispora yunnanensis str. Y-11981 CCTCC M90959 . AF0567
prokMSA_id:12937 Kibdelosporangium aridum subsp. aridum
prokMSA_id:18128 Pseudonocardia sulfidoxydans 
prokMSA_id:18313 Pseudonocardia hydrocarbonoxydans strain IMSNU 22140T
prokMSA_id:20264 Pseudonocardia halophobica strain IMSNU 21327T
prokMSA_id:22784 #0649-1I18 
prokMSA_id:27130 Actinobispora aurantiaca 
prokMSA_id:30436 Soil strain LM 157 
prokMSA_id:30607 Kibdelosporangium aridum subsp. aridum strain DSM 43828T
prokMSA_id:31830 Actinobispora yunnanensis strain IMSNU 22019T
prokMSA_id:43413 Pseudonocardia petroleophila strain IMSNU 22072T AJ252828
prokMSA_id:50638 Pseudonocardia zijingensis 
prokMSA_id:56399 Kibdelosporangium aridum subsp. largum strain DSM 44150T
prokMSA_id:77990 actinobacterium clone:APe4_52 AB074634
prokMSA_id:85008 Pseudonocardia benzenivorans 
prokMSA_id:85863 Pseudonocardia sp. M1 
prokMSA_id:91804 Pseudonocardia dioxanivorans AY340622
2.30.1.12.1.1881 OTU 1 seq
prokMSA_id:46023 #0319-6A24 
2.30.1.12.1.1932 OTU 1 seq
prokMSA_id:42025 Pseudonocardia spinospora isolate LM 141T
2.30.1.12.1.1971 OTU 1 seq
prokMSA_id:51028 Pseudonocardia saturnea strain IMSNU 20052T
2.30.1.12.1.2029 OTU 1 seq
prokMSA_id:35860 Actinobacterium YNPRH1P-1 
2.30.1.12.2 KIB.ARIDUM_SUBGROUP 1 seq
2.30.1.12.2.1430 OTU 1 seq
prokMSA_id:12936 Kibdelosporangium aridum subsp. aridum
2.30.1.12.3 SCP.HIRSUTA_SUBGROUP 15 seqs
2.30.1.12.3.1250 OTU 1 seq
prokMSA_id:50663 Saccharopolyspora sp. IM-8155 
2.30.1.12.3.1470 OTU 1 seq
prokMSA_id:12941 Saccharopolyspora thermophilus str. str216
2.30.1.12.3.1472 OTU 1 seq
prokMSA_id:12942 Saccharopolyspora flava str. AS4.1520T
2.30.1.12.3.1468 OTU 1 seq
prokMSA_id:12940 Saccharopolyspora spinosa str. A83543.1 DSM 44228
2.30.1.12.3.1475 OTU 1 seq
prokMSA_id:12944 Saccharopolyspora hirsuta subsp. hirsuta ATCC 27875
2.30.1.12.3.1473 OTU 1 seq
prokMSA_id:12943 Saccharopolyspora taberi str. LL-WRAT-210 DSM 43856
2.30.1.12.3.1495 OTU 1 seq
prokMSA_id:12950 Actinopolyspora mortivallis JCM 7550
2.30.1.12.3.1496 OTU 1 seq
prokMSA_id:12952 Actinopolyspora halophila
2.30.1.12.3.1566 OTU 1 seq
prokMSA_id:41449 Actinopolyspora indiensis 
2.30.1.12.3.1731 OTU 2 seqs
prokMSA_id:16982 Saccharopolyspora sp. IM-6850 
prokMSA_id:37273 Saccharopolyspora sp. IM-6889 
2.30.1.12.3.1849 OTU 3 seqs
prokMSA_id:17258 Saccharopolyspora sp. IM-8127 
prokMSA_id:17604 Saccharopolyspora sp. IM-6897 
prokMSA_id:70980 Saccharopolyspora sp. IM-7019 
2.30.1.12.3.1904 OTU 1 seq
prokMSA_id:45443 Saccharopolyspora sp. IM-8110 
2.30.1.12.4 SCT.AUSTRALIENSIS_SUBGROUP 40 seqs
2.30.1.12.4.1125 OTU 4 seqs
prokMSA_id:12979 Actinokineospora diospyrosa NRRL B-24047
prokMSA_id:12996 Actinokineospora globicatena NRRL B-24048
prokMSA_id:35192 Actinokineospora sp. YU 873-1 
prokMSA_id:40462 Actinokineospora terrae 
2.30.1.12.4.1126 OTU 2 seqs
prokMSA_id:12986 Actinosynnema mirum IFO 14064
prokMSA_id:70383 Actinosynnema mirum strain IFO14064 
2.30.1.12.4.1167 OTU 1 seq
prokMSA_id:33829 Actinokineospora enzanensis 
2.30.1.12.4.1249 OTU 1 seq
prokMSA_id:47825 Actinokineospora sp. YU 923-201 
2.30.1.12.4.1438 OTU 1 seq
prokMSA_id:20152 ORGANIC-10 
2.30.1.12.4.1463 OTU 21 seqs
prokMSA_id:12958 Saccharothrix NRRL B-16133 NRRL B-16133
prokMSA_id:12959 Saccharothrix espanaensis NRRL 15764
prokMSA_id:12960 Saccharothrix australiensis str. LL-BM782Ce8 NRRL 11239
prokMSA_id:12963 Saccharothrix coeruleofusca NRRL B-16115
prokMSA_id:12970 Saccharothrix texasensis NRRL B-16107
prokMSA_id:12971 Saccharothrix texasensis NRRL B-16134
prokMSA_id:12973 Saccharothrix syringae NRRL B-16468
prokMSA_id:12974 Saccharothrix NRRL B-16108 NRRL B-16108
prokMSA_id:50409 Saccharothrix texasensis strain AS4.1186 
prokMSA_id:60437 Saccharothrix sp. AS 4.1731 
prokMSA_id:60450 Saccharothrix algeriensis 
prokMSA_id:63693 Saccharothrix sp. 98-41-281A complete 
prokMSA_id:63694 Saccharothrix sp. 98-41-338A complete 
prokMSA_id:63695 Saccharothrix sp. 98-41-143A complete 
prokMSA_id:63696 Saccharothrix sp. 98-10-099A complete 
prokMSA_id:69794 Saccharothrix sp. 99-08-211A complete AF361323
prokMSA_id:70369 Saccharothrix sp. 99-08-222A complete AF328413
prokMSA_id:70891 Saccharothrix sp. 99-08-221A complete 
prokMSA_id:71267 Saccharothrix sp. 99-08-243A complete 
prokMSA_id:71761 Saccharothrix sp. 98-05-041A complete AF328411
prokMSA_id:73943 Saccharothrix sp. 99-08-236A complete 
2.30.1.12.4.1951 OTU 1 seq
prokMSA_id:12975 Saccharothrix longispora NRRL B-116116
2.30.1.12.4.1954 OTU 1 seq
prokMSA_id:12978 Actinosynnema pretiosum subsp. pretiosum NRRL B-16060
2.30.1.12.4.1975 OTU 1 seq
prokMSA_id:12980 Saccharothrixopsis albidus str. AS4.0423
2.30.1.12.4.1984 OTU 1 seq
prokMSA_id:12984 Saccharothrix tangerinus str. MK27-91F2
2.30.1.12.4.1988 OTU 1 seq
prokMSA_id:12987 Kutzneria viridogrisea JCM 3282
2.30.1.12.4.2007 OTU 1 seq
prokMSA_id:12990 Actinoalloteichus cyanogriseus IFO 14455
2.30.1.12.4.2009 OTU 1 seq
prokMSA_id:12992 Kutzneria viridogrisea DSM 43850
2.30.1.12.4.2011 OTU 1 seq
prokMSA_id:12995 Actinokineospora inagensis NRRL B-24050
2.30.1.12.4.2010 OTU 2 seqs
prokMSA_id:12993 Actinokineospora riparia IFO 14541 . X76953
prokMSA_id:12994 Actinokineospora riparia NRRL B-16432
2.30.1.12.5 AMY.ORIENTALIS_SUBGROUP 75 seqs
2.30.1.12.5.1104 OTU 10 seqs
prokMSA_id:55702 Amycolatopsis sp. GY053 
prokMSA_id:59956 Amycolatopsis sp. GY311 
prokMSA_id:59968 Amycolatopsis sp. GY116 
prokMSA_id:63752 Amycolatopsis mediterranei strain KCTC 1739T 
prokMSA_id:63968 Amycolatopsis sp. GY144 
prokMSA_id:63971 Amycolatopsis sp. GY124 
prokMSA_id:63976 Amycolatopsis sp. GY051 
prokMSA_id:67634 Amycolatopsis mediterranei strain F1/24 
prokMSA_id:79363 Amycolatopsis mediterranei strain NRRL B-3240 
prokMSA_id:85299 Amycolatopsis sp. GY125 
2.30.1.12.5.1119 OTU 10 seqs
prokMSA_id:59481 Amycolatopsis tolypophora strain DSM 44544T
prokMSA_id:59958 Amycolatopsis sp. GY207 
prokMSA_id:59959 Amycolatopsis sp. GY286 
prokMSA_id:59960 Amycolatopsis sp. GY269 
prokMSA_id:59964 Amycolatopsis sp. GY211 
prokMSA_id:59967 Amycolatopsis sp. GY212 
prokMSA_id:59971 Amycolatopsis sp. GY064 
prokMSA_id:59976 Amycolatopsis sp. GY056 
prokMSA_id:59977 Amycolatopsis sp. GY049 
prokMSA_id:59978 Amycolatopsis sp. GY048 
2.30.1.12.5.1355 OTU 11 seqs
prokMSA_id:13004 Amycolatopsis mediterranei str. ME 83/973 ATCC 13685 . X7695
prokMSA_id:55272 Amycolatopsis sp. GY295 
prokMSA_id:55691 Amycolatopsis sp. GY131 
prokMSA_id:59482 Amycolatopsis balhimycetica strain DSM 44591T
prokMSA_id:63974 Amycolatopsis sp. GY055 
prokMSA_id:63975 Amycolatopsis sp. GY109 
prokMSA_id:79479 Amycolatopsis kentuckyensis 
prokMSA_id:82587 Amycolatopsis sp. GY154 
prokMSA_id:85001 Amycolatopsis sp. GY179 
prokMSA_id:85854 Amycolatopsis sp. GY299 
prokMSA_id:91736 Amycolatopsis mediterranei strain IMSNU 20056T AJ293754
2.30.1.12.5.1388 OTU 1 seq
prokMSA_id:37332 Amycolatopsis sacchari 
2.30.1.12.5.1393 OTU 1 seq
prokMSA_id:13005 Amycolatopsis sulphurea DSM 46092
2.30.1.12.5.1594 OTU 1 seq
prokMSA_id:63969 Amycolatopsis sp. GY307 
2.30.1.12.5.1661 OTU 22 seqs
prokMSA_id:12997 Amycolatopsis orientalis subsp. orientalis DSM 40040 . X7695
prokMSA_id:12998 Amycolatopsis sp. str. MG 417
prokMSA_id:13000 Amycolatopsis orientalis subsp. orientalis IFO 12806 . D8693
prokMSA_id:13002 Amycolatopsis alba str. A83850 DSM 44262
prokMSA_id:13003 Amycolatopsis coloradensis NRRL 3218
prokMSA_id:23414 Amycolatopsis keratinophila strain DSM 44409T
prokMSA_id:23759 Amycolatopsis orientalis strain IMSNU 20058T
prokMSA_id:25029 Amycolatopsis azurea strain IMSNU 20053T
prokMSA_id:51483 Amycolatopsis coloradensis strain DSM 44225T
prokMSA_id:55883 Amycolatopsis decaplanensis strain DSM 44594T
prokMSA_id:59484 Amycolatopsis nogabecetica strain DSM 44586T
prokMSA_id:59492 Amycolatopsis japonica strain DSM 44213T AJ508236
prokMSA_id:59962 Amycolatopsis sp. GY293 
prokMSA_id:59963 Amycolatopsis sp. GY248 AY129768
prokMSA_id:59965 Amycolatopsis sp. GY249 
prokMSA_id:59966 Amycolatopsis sp. GY246 
prokMSA_id:59969 Amycolatopsis sp. GY091 AY129761
prokMSA_id:59970 Amycolatopsis sp. GY080 
prokMSA_id:88764 Amycolatopsis orientalis subsp. lurida strain DSM 43134T AJ5
prokMSA_id:91198 Amycolatopsis orientalis strain IMSNU 20057T AJ293755
prokMSA_id:91582 Amycolatopsis coloradensis strain MSNU 22096T AJ293753
prokMSA_id:97470 Amycolatopsis sp. 340C07 AB124414
2.30.1.12.5.1824 OTU 5 seqs
prokMSA_id:59955 Amycolatopsis sp. GY088 AY129774
prokMSA_id:63970 Amycolatopsis sp. GY142 
prokMSA_id:63972 Amycolatopsis sp. GY073 
prokMSA_id:63973 Amycolatopsis sp. GY024 
prokMSA_id:91887 Amycolatopsis sulphurea strain IMSNU 20060T AJ293756
2.30.1.12.5.1867 OTU 7 seqs
prokMSA_id:59483 Amycolatopsis vancoresmycetica strain DSM 44592T
prokMSA_id:59974 Amycolatopsis sp. GY062 
prokMSA_id:59975 Amycolatopsis sp. GY052 
prokMSA_id:67635 Amycolatopsis mediterranei strain DSM 46095 
prokMSA_id:79251 Amycolatopsis pretoriensis 
prokMSA_id:79423 Amycolatopsis lexingtonensis 
prokMSA_id:85437 Amycolatopsis sp. GY203 
2.30.1.12.5.1907 OTU 1 seq
prokMSA_id:35684 Amycolatopsis albidoflavus strain IMSNU 22139T
2.30.1.12.5.1928 OTU 2 seqs
prokMSA_id:13006 Amycolatopsis thermoflava str. N1165
prokMSA_id:27705 Amycolatopsis methanolica strain IMSNU 20055T
2.30.1.12.5.1957 OTU 1 seq
prokMSA_id:47068 Amycolatopsis sp. IM-1163 
2.30.1.12.5.2033 OTU 3 seqs
prokMSA_id:49974 Streptomyces lactamdurans 
prokMSA_id:54677 Nocardia lactamdurans and 23S genes and ITS1 AJ243301
prokMSA_id:70505 Streptomyces lactamdurans AB045862
2.30.1.12.6 SCM.VIRIDIS_SUBGROUP 26 seqs
2.30.1.12.6.1343 OTU 14 seqs
prokMSA_id:13010 Saccharomonospora sp. str. K180; 30Urbakt
prokMSA_id:13011 Saccharomonospora caesia str. SB-01. Z38022
prokMSA_id:13014 Saccharomonospora caesia str. SB-22. Z38023
prokMSA_id:13015 Saccharomonospora glauca str. SB-37. Z38006
prokMSA_id:13022 Saccharomonospora glauca str. K169 DSM 43769
prokMSA_id:13023 Saccharomonospora caesia str. SB-58. Z38024
prokMSA_id:13024 Saccharomonospora cyanea str. K168; NA134
prokMSA_id:13026 Saccharomonospora glauca str. K202; J-S.Ruan 350. Z38004
prokMSA_id:13029 Saccharomonospora caesia str. K163 DSM 43068. Z38019
prokMSA_id:13030 Saccharomonospora azurea str. K161; NA128 . Z38017
prokMSA_id:28485 Saccharomonospora xinjiangensis strain DSM 44391T
prokMSA_id:43601 Saccharomonospora glauca strain KCTC 9645 AF139879
prokMSA_id:74805 Saccharomonospora glauca strain KCTC 3673 AF139880
prokMSA_id:81456 Saccharomonospora sp. PAN A5 
2.30.1.12.6.1441 OTU 1 seq
prokMSA_id:18682 clone KS65 
2.30.1.12.6.1474 OTU 1 seq
prokMSA_id:13016 Prauserella rugosa DSM 43194
2.30.1.12.6.1533 OTU 4 seqs
prokMSA_id:13013 Saccharomonospora viridis str. K191; Greiner-Mai R25. Z38021
prokMSA_id:13017 Saccharomonospora viridis str. SB-33. Z38005
prokMSA_id:13019 Saccharomonospora viridis str. K73 NCIMB 9602 . Z38007
prokMSA_id:13020 Saccharomonospora thermoviridis str. str22.1
2.30.1.12.6.1540 OTU 1 seq
prokMSA_id:13027 clone TAYNAYA-20
2.30.1.12.6.1648 OTU 1 seq
prokMSA_id:19135 Saccharomonospora halophila strain DSM 44411T
2.30.1.12.6.1789 OTU 3 seqs
prokMSA_id:26772 actinobacterium MERTZ_21CM_154 
prokMSA_id:48844 actinobacterium MERTZ_0CM_320 
prokMSA_id:50134 actinobacterium MERTZ_2CM_348 AF424422
2.30.1.12.6.1953 OTU 1 seq
prokMSA_id:13031 Saccharomonospora guangxiensis str. str4
2.30.1.13 MYCOBACTERIUM_SUBDIVISION 816 seqs
2.30.1.13.1 MYCOBACTERIA_GROUP 262 seqs
2.30.1.13.1.1 MYB.TUBERCULOSIS_SUBGROUP 233 seqs
2.30.1.13.1.1.1093 OTU 1 seq
prokMSA_id:13140 Mycobacterium triviale ATCC 23292
2.30.1.13.1.1.1114 OTU 1 seq
prokMSA_id:13222 Mycobacterium PENDANT-38
2.30.1.13.1.1.1117 OTU 1 seq
prokMSA_id:13223 Mycobacterium ACE-41
2.30.1.13.1.1.1134 OTU 2 seqs
prokMSA_id:13153 Mycobacterium sp. str. IWGMT 90247
prokMSA_id:13154 Mycobacterium sp. str. IWGMT 90233. X88918
2.30.1.13.1.1.1172 OTU 1 seq
prokMSA_id:13166 clone Ep_T1.252
2.30.1.13.1.1.1175 OTU 6 seqs
prokMSA_id:13162 Mycobacterium xenopi ATCC 19250
prokMSA_id:13235 Mycobacterium xenopi ATCC 19250
prokMSA_id:27854 Mycobacterium sydneyiensis AF101243
prokMSA_id:32230 Mycobacterium heckeshornense 
prokMSA_id:39844 Mycobacterium cf. xenopi 'Hymi_Wue Tb_939/99' AJ243481
prokMSA_id:78273 Mycobacterium xenopi 
2.30.1.13.1.1.1180 OTU 9 seqs
prokMSA_id:13040 Mycobacterium heidelbergense str. 2554/91 ATCC 51253 . AJ000
prokMSA_id:13041 Mycobacterium heidelbergense. X70960
prokMSA_id:13043 Mycobacterium sp. str. IWGMT 90174
prokMSA_id:13111 Mycobacterium sp. str. IWGMT 90210
prokMSA_id:38495 Mycobacterium kubicae 
prokMSA_id:54449 Mycobacterium palustre and internal transcribed spacer 1 ITS
prokMSA_id:73821 Mycobacterium heidelbergense strain ITG 7971 MB43
prokMSA_id:85375 Mycobacterium sp. SA394 and ITS1 isolate SA394
prokMSA_id:85394 Mycobacterium sp. YM12 
2.30.1.13.1.1.1187 OTU 22 seqs
prokMSA_id:13048 Mycobacterium madagascariense ATCC 49865
prokMSA_id:13056 Mycobacterium obuense ATCC 27023
prokMSA_id:13076 Mycobacterium FI-25796 str. FI-25796
prokMSA_id:13099 Mycobacterium sp. str. SRB1948-E04
prokMSA_id:13105 Mycobacterium aurum ATCC 23366
prokMSA_id:13137 Mycobacterium hodleri str. EMI2 DSM 44183
prokMSA_id:13138 Mycobacterium isoniacini str. INA-I
prokMSA_id:13141 Mycobacterium gilvum ATCC 43909
prokMSA_id:13148 Mycobacterium sp. str. MCRO 10
prokMSA_id:13151 Mycobacterium thermoresistibile ATCC 19527
prokMSA_id:13158 Mycobacterium C2-3 str. C2-3
prokMSA_id:13172 Mycobacterium gadium ATCC 27726
prokMSA_id:13179 Mycobacterium vaccae ATCC 15483
prokMSA_id:13253 Mycobacterium sp. str. MA-112/96
prokMSA_id:23360 Mycobacterium vaccae 
prokMSA_id:32288 Mycobacterium tokaiense 
prokMSA_id:34222 Mycobacterium brumae 
prokMSA_id:67497 Mycobacterium sp. HXN100 AJ441306
prokMSA_id:68741 Glacial ice SB12K-2-16 
prokMSA_id:70827 Mycobacterium aichiense strain JS618 
prokMSA_id:81725 Mycobacterium sp. clone VC17 
prokMSA_id:86938 Mycobacterium sp. PP1 strain:RP1 AB009578
2.30.1.13.1.1.1204 OTU 1 seq
prokMSA_id:13039 Mycobacterium sp
2.30.1.13.1.1.1239 OTU 6 seqs
prokMSA_id:13118 Mycobacterium ratisbonense
prokMSA_id:13191 Mycobacterium anthracenicum
prokMSA_id:13194 Mycobacterium M0183 str. M0183
prokMSA_id:19289 Mycobacterium ratisbonense strain SD4
prokMSA_id:28701 Mycobacterium mucogenicum strain ATCC 49650 
prokMSA_id:67346 Mycobacterium sp. BPC5 
2.30.1.13.1.1.1242 OTU 1 seq
prokMSA_id:13266 Mycobacterium tuberculosis str. H37/Rv
2.30.1.13.1.1.1262 OTU 17 seqs
prokMSA_id:13047 Mycobacterium hiberniae str. Hi 11 ATCC 49874
prokMSA_id:13103 Mycobacterium gordonae str. P-15 ATCC 14470 . M29563
prokMSA_id:13115 Mycobacterium sp
prokMSA_id:13120 Mycobacterium chitae ATCC 19627
prokMSA_id:13146 Mycobacterium elephantis
prokMSA_id:13147 Mycobacterium sp. str. MCRO 7
prokMSA_id:13197 Mycobacterium nonchromogenicum ATCC 19530
prokMSA_id:13198 Mycobacterium sp. str. MCRO 6
prokMSA_id:13239 Mycobacterium asiaticum str. N6IH ATCC 25276 . M29556
prokMSA_id:13261 Mycobacterium confluentis
prokMSA_id:27078 Mycobacterium holsaticum strain 1406
prokMSA_id:27836 Mycobacterium elephantis 
prokMSA_id:42140 Mycobacterium engbaekii 
prokMSA_id:50846 Mycobacterium sp. MB65 strain MB65 AJ416911
prokMSA_id:72357 Mycobacterium fallax 
prokMSA_id:78035 Mycobacterium elephantis strain FI-13900
prokMSA_id:92711 Mycobacterium sp. NIPHL130302 AY360325
2.30.1.13.1.1.1308 OTU 6 seqs
prokMSA_id:13150 Mycobacterium monacense str. B9-21-178
prokMSA_id:13199 Mycobacterium sp
prokMSA_id:20317 Mycobacterium sp. MCS 
prokMSA_id:23135 Mycobacterium sp. JLS 
prokMSA_id:68650 Mycobacterium sp. KMS 
prokMSA_id:75651 Mycobacterium sp. DSM 44605 strain DSM 44605
2.30.1.13.1.1.1312 OTU 2 seqs
prokMSA_id:13187 Mycobacterium fortuitum
prokMSA_id:13256 Mycobacterium fortuitum
2.30.1.13.1.1.1317 OTU 1 seq
prokMSA_id:32952 clone HTDD3 
2.30.1.13.1.1.1365 OTU 12 seqs
prokMSA_id:13116 Mycobacterium immunogen str. MN 3744
prokMSA_id:13119 Mycobacterium n. sp. 'Fuerth 1999' str. 01.22.181
prokMSA_id:19458 Mycobacterium abscessus AF480592
prokMSA_id:29667 Mycobacterium abscessus strain MB849
prokMSA_id:32018 Mycobacterium abscessus strain ITG 98-1292 AJ419970
prokMSA_id:33483 Mycobacterium chelonae 
prokMSA_id:37469 Mycobacterium chelonae strain MB300
prokMSA_id:42323 Mycobacterium chelonae strain ITG 96-0295
prokMSA_id:42486 Mycobacterium fuerth 
prokMSA_id:67500 Mycobacterium fuerth strain HXN1000
prokMSA_id:73622 Mycobacterium chelonae strain MB834
prokMSA_id:78097 Mycobacterium abscessus 
2.30.1.13.1.1.1435 OTU 9 seqs
prokMSA_id:13068 Mycobacterium lentiflavum str. 2186/92 ATCC 51985
prokMSA_id:13091 Mycobacterium sp. str. IWGMT 90143
prokMSA_id:13108 Mycobacterium lentiflavum str. 89-446 ATCC 51988
prokMSA_id:13110 Mycobacterium sp. str. MCRO 18
prokMSA_id:13200 Mycobacterium genavense str. 2289 ATCC 51233
prokMSA_id:13264 Mycobacterium sp. str. 94-92
prokMSA_id:28531 Mycobacterium lentiflavum 
prokMSA_id:47839 Mycobacterium triplex 
prokMSA_id:53023 Mycobacterium cf. triplex 'isolate 23' and internal transcri
2.30.1.13.1.1.1491 OTU 2 seqs
prokMSA_id:31840 Gordonia-like sp. strain J82 X85238
prokMSA_id:42979 Gordonia-like sp. strain J81
2.30.1.13.1.1.1637 OTU 6 seqs
prokMSA_id:13057 Mycobacterium sp. str. PYR-1
prokMSA_id:13096 str. IFP2173
prokMSA_id:13221 Mycobacterium sp. str. PYR-I Fast Growing PAH Degrader
prokMSA_id:58279 Mycobacterium austroafricanum isolate VM0456 complete 
prokMSA_id:70204 Mycobacterium austroafricanum isolate VM0450 complete 
prokMSA_id:74074 Mycobacterium austroafricanum isolate VM0451 complete 
2.30.1.13.1.1.1650 OTU 24 seqs
prokMSA_id:13077 Mycobacterium bovis str. vallee
prokMSA_id:13086 Mycobacterium celatum str. 3 NCTC 12882
prokMSA_id:13102 Mycobacterium ulcerans
prokMSA_id:13104 Mycobacterium celatum ATCC 51130
prokMSA_id:13129 Mycobacterium asiaticum str. N6IH ATCC 25276
prokMSA_id:13173 Mycobacterium tuberculosis str. H37/Rv
prokMSA_id:13177 Mycobacterium tuberculosis
prokMSA_id:13182 Mycobacterium bovis str. BCG
prokMSA_id:13204 Mycobacterium interjectum str. 4185/92 DSM 44064
prokMSA_id:13206 Mycobacterium interjectum str. patient 2
prokMSA_id:13207 Mycobacterium interjectum str. patient 3
prokMSA_id:13208 Mycobacterium sp. str. MCRO 8
prokMSA_id:13209 Mycobacterium sp. str. IWGMT 90100
prokMSA_id:13211 Mycobacterium sp. str. IWGMT 90093
prokMSA_id:13224 Mycobacterium celatum ATCC 51131
prokMSA_id:13226 Mycobacterium IMVS B76676 IMVS B76676
prokMSA_id:18959 Mycobacterium sp. 'Sydney 2453' 
prokMSA_id:31828 Mycobacterium asiaticum 
prokMSA_id:36821 Mycobacterium cookii 
prokMSA_id:52725 Mycobacterium microti 
prokMSA_id:64868 Mycobacterium avium Myc373 -23S internal transcribed spacer 
prokMSA_id:66586 Mycobacterium pinnipedii 
prokMSA_id:70429 Mycobacterium celatum strain MB72
prokMSA_id:77688 Mycobacterium celatum 
2.30.1.13.1.1.1681 OTU 2 seqs
prokMSA_id:84725 Mycobacterium sp. 1BCD clone 2 
prokMSA_id:86670 Mycobacterium sp. 1BCD clone 1 AY227355
2.30.1.13.1.1.1726 OTU 5 seqs
prokMSA_id:13085 Mycobacterium terrae str. W-45 ATCC 15755
prokMSA_id:13233 Mycobacterium terrae str. W-45 ATCC 15755
prokMSA_id:26897 Mycobacterium sp. strain MCRO 16
prokMSA_id:49725 Mycobacterium sp. strain MCRO 24
prokMSA_id:69729 Mycobacterium sp. 'graecum DL049' 
2.30.1.13.1.1.1781 OTU 6 seqs
prokMSA_id:13053 Mycobacterium sp. str. PAH135
prokMSA_id:13073 Mycobacterium sp. str. RJGll.135 Fast Growing Pyrene Degrade
prokMSA_id:13075 Mycobacterium sp. str. GP1
prokMSA_id:13174 Mycobacterium aichiense ATCC 27280
prokMSA_id:38064 Mycobacterium rhodesiae strain DSM 44223T
prokMSA_id:60765 Mycobacterium rhodesiae strain JS60 
2.30.1.13.1.1.1857 OTU 2 seqs
prokMSA_id:13069 Mycobacterium hassiacum
prokMSA_id:13070 Mycobacterium buckleii
2.30.1.13.1.1.1860 OTU 29 seqs
prokMSA_id:13058 Mycobacterium ulcerans
prokMSA_id:13059 Mycobacterium ulcerans str. Borstel 10564/70
prokMSA_id:13078 Mycobacterium malmoense str. Mo 816 ATCC 29571
prokMSA_id:13079 Mycobacterium malmoense str. RV423C
prokMSA_id:13122 Mycobacterium paraffinicum ATCC 12670
prokMSA_id:13123 Mycobacterium sp. str. IWGMT 90160
prokMSA_id:13124 Mycobacterium sp. str. IWGMT 90236
prokMSA_id:13139 Mycobacterium kansasii str. SN 502 DSM 43224
prokMSA_id:13152 Mycobacterium intracellulare str. SN 424 ATCC 15985
prokMSA_id:13165 Mycobacterium haemophilum
prokMSA_id:13167 Mycobacterium bohemicum
prokMSA_id:13168 Mycobacterium haemophilum
prokMSA_id:13202 Mycobacterium marinum
prokMSA_id:13227 Mycobacterium haemophilum
prokMSA_id:13230 Mycobacterium gastri str. W-417 ATCC 15754
prokMSA_id:13262 Mycobacterium intermedium
prokMSA_id:18950 Mycobacterium lacus 
prokMSA_id:23068 Mycobacterium sp. M175 
prokMSA_id:38629 Mycobacterium scrofulaceum 
prokMSA_id:50858 Mycobacterium marinum 
prokMSA_id:52968 Mycobacterium bohemicum and internal transcribed spacer 1 IT
prokMSA_id:54160 Mycobacterium bohemicum and internal transcribed spacer 1 IT
prokMSA_id:66700 Mycobacterium malmoense ; internal transcribed spacer comple
prokMSA_id:69220 Mycobacterium marinum strain ATCC 927 
prokMSA_id:69661 Mycobacterium marinum strain cyprinum CC240299 
prokMSA_id:69678 Mycobacterium marinum strain eilaticum DL240490 
prokMSA_id:72489 Mycobacterium marinum strain hellenicum DL045 
prokMSA_id:77825 Mycobacterium kansasii 
prokMSA_id:79404 Mycobacterium sp. HSC 1852 
2.30.1.13.1.1.1885 OTU 11 seqs
prokMSA_id:13035 Mycobacterium diernhoferi str. SN 1418 ATCC 19340
prokMSA_id:13184 Mycobacterium CH-1 str. CH-1
prokMSA_id:13185 Mycobacterium sp. str. SRB1151-113
prokMSA_id:20364 Mycobacterium neoaurum 
prokMSA_id:30438 Mycobacterium neoaurum 
prokMSA_id:30995 Mycobacterium diernhoferi 
prokMSA_id:46211 Mycobacterium frederiksbergense strain DSM 44346
prokMSA_id:67483 Mycobacterium sp. HXN1500 strain HXN1500
prokMSA_id:73637 Mycobacterium sp. strain LB501T
prokMSA_id:84497 Mycobacterium canariense strain 502329 
prokMSA_id:84713 Mycobacterium sp. TH-2003 
2.30.1.13.1.1.1888 OTU 2 seqs
prokMSA_id:70548 Mycobacterium sp. JS624 
prokMSA_id:73627 Mycobacterium brisbanense strain ATCC 49938 
2.30.1.13.1.1.2034 OTU 45 seqs
prokMSA_id:13032 Mycobacterium chlorophenolicum str. PCP-I DSM 43826
prokMSA_id:13033 Mycobacterium WF2 str. WF2
prokMSA_id:13050 Mycobacterium fortuitum subsp. fortuitum ATCC 6841
prokMSA_id:13066 Mycobacterium parafortuitum str. 311 DSM 43528
prokMSA_id:13114 Mycobacterium farcinogenes ATCC 35753
prokMSA_id:13145 Mycobacterium duvalii str. C-63 ATCC 43910
prokMSA_id:13160 Mycobacterium HE5 str. HE5
prokMSA_id:13164 Mycobacterium chubuense ATCC 27278
prokMSA_id:13183 Mycobacterium alvei str. CR-21 CIP 103464
prokMSA_id:13188 Mycobacterium chlorophenolicum str. PCP-I DSM 43826
prokMSA_id:13190 Mycobacterium chelonae ATCC 14472
prokMSA_id:13192 Mycobacterium IFO16251 IFO 16251
prokMSA_id:13193 Mycobacterium sp. str. DhA-55
prokMSA_id:13249 Mycobacterium smegmatis str. M069
prokMSA_id:13250 Mycobacterium smegmatis str. mc2 155
prokMSA_id:13251 Mycobacterium peregrinum str. Schering 20 ATCC 14467
prokMSA_id:13252 Mycobacterium wolinsky str. 700010
prokMSA_id:13254 Mycobacterium mageritense str. 1336
prokMSA_id:13255 Mycobacterium wolinsky ATCC 700009
prokMSA_id:18390 Mycobacterium septicum 
prokMSA_id:22210 Mycobacterium chubuense 
prokMSA_id:22237 Mycobacterium sp. SM7.6.1 
prokMSA_id:23238 Mycobacterium septicum strain MB804
prokMSA_id:23960 Mycobacterium phlei 
prokMSA_id:25000 Mycobacterium flavescens strain ATCC 23008 
prokMSA_id:25175 Mycobacterium neworleansense strain ATCC 49404 
prokMSA_id:25519 Mycobacterium concordense strain ATCC BAA-329 
prokMSA_id:26463 Mycobacterium fortuitum strain MB44
prokMSA_id:28402 Mycobacterium fortuitum strain ATCC 49403 
prokMSA_id:28739 Mycobacterium porcinum strain ATCC BAA-328 
prokMSA_id:30001 Mycobacterium bonickei strain ATCC 49935 
prokMSA_id:39806 Mycobacterium sp. TA5 
prokMSA_id:43972 Mycobacterium senegalense 
prokMSA_id:47184 Mycobacterium fortuitum strain ATCC 49404 
prokMSA_id:58772 Mycobacterium sp. CF1 strain CF1
prokMSA_id:65316 Mycobacterium goodii strain X7B 
prokMSA_id:67481 Mycobacterium septicum strain HXN500
prokMSA_id:67482 Mycobacterium septicum strain HXN1900
prokMSA_id:71981 Mycobacterium porcinum strain ATCC 49939 
prokMSA_id:78325 Mycobacterium fortuitum subsp. fortuitum 
prokMSA_id:78549 Mycobacterium psychrotolerans strain WA101T
prokMSA_id:78930 Mycobacterium sp. I5 
prokMSA_id:79505 Mycobacterium sp. NB01 
prokMSA_id:86344 Mycobacterium sp. DSM 3803 
prokMSA_id:86633 Mycobacterium sp. Myc399 ; intergenic spacer complete ; and 
2.30.1.13.1.1.2056 OTU 1 seq
prokMSA_id:13218 Mycobacterium tilburgii
2.30.1.13.1.2 TSU.PAUROMETABOLA_SUBGROUP 29 seqs
2.30.1.13.1.2.1347 OTU 28 seqs
prokMSA_id:13267 Tsukamurella inchonensis str. IMMIB D-771 DSM 44067
prokMSA_id:13269 Tsukamurella paurometabola
prokMSA_id:13270 Tsukamurella paurometabola DSM 20162
prokMSA_id:13271 Tsukamurella pulmonis IMMIB D-1321
prokMSA_id:13272 Tsukamurella pulmonis str. KUL50
prokMSA_id:13273 Tsukamurella tyrosinovorans str. D-1437. Y12247
prokMSA_id:13274 Tsukamurella tyrosinovorans str. D-1397. Y12246
prokMSA_id:13275 Tsukamurella tyrosinovorans str. D-1411
prokMSA_id:13276 Tsukamurella tyrosinovorans str. D-1498. Y12245
prokMSA_id:13277 Tsukamurella U5 str. U5
prokMSA_id:13278 Tsukamurella paurometabola str. N663 NCTC 10741
prokMSA_id:13279 Tsukamurella spumae str. M. Goodfellow N1171 strain. Z37150
prokMSA_id:13282 Tsukamurella paurometabola DSM 20162
prokMSA_id:20974 Tsukamurella inchonensis strain ATCC700082 complete AF283281
prokMSA_id:23307 Tsukamurella inchonensis strain ATCC25938 complete AF283282
prokMSA_id:34660 Tsukamurella sp. AM4.1 
prokMSA_id:42701 Tsukamurella strandjordae strain ATCCBAA-173 complete 
prokMSA_id:45072 Tsukamurella paurometabola complete 
prokMSA_id:47206 Tsukamurella tyrosinosolvens AF475083
prokMSA_id:69803 Tsukamurella columbiensis complete 
prokMSA_id:83812 Tsukamurella tyrosinosolvens strain DSM 44234 complete 
prokMSA_id:84348 Tsukamurella spumae strain N1173 complete 
prokMSA_id:86078 Tsukamurella tyrosinosolvens strain M12400 AY254699
prokMSA_id:86153 Tsukamurella tyrosinosolvens strain M95570 AY253916
prokMSA_id:86173 Tsukamurella spumae strain N1176 complete 
prokMSA_id:86184 Tsukamurella tyrosinosolvens AY259830
prokMSA_id:86558 Tsukamurella pulmonis strain M67570 
prokMSA_id:91598 Tsukamurella pseudospumae AY333425
2.30.1.13.1.2.1903 OTU 1 seq
prokMSA_id:78033 actinobacterium clone:APe2_64
2.30.1.13.2 CORYNEBACTERIUM_GROUP 311 seqs
2.30.1.13.2.1 GRD.AMARAE_SUBGROUP 40 seqs
2.30.1.13.2.1.1116 OTU 6 seqs
prokMSA_id:13283 Gordonia terrae
prokMSA_id:13284 Gordonia terrae str. MZ 230973
prokMSA_id:13285 Gordonia sp
prokMSA_id:13286 Gordonia terrae CDC W5151
prokMSA_id:13311 Gordonia terrae ATCC 25594
prokMSA_id:68728 Glacial ice SIA1K-2A1 
2.30.1.13.2.1.1184 OTU 22 seqs
prokMSA_id:13287 str. SR 259
prokMSA_id:13291 Gordonia rubropertincta ATCC 25593
prokMSA_id:13292 Gordonia IBT2679-051 str. IBT2679-051
prokMSA_id:13293 Gordonia 213E str. 213E
prokMSA_id:13294 Gordonia 213F str. 213F
prokMSA_id:13312 Gordonia rubropertincta
prokMSA_id:13313 Gordonia RR str. RR
prokMSA_id:13324 Gordonia bronchialis
prokMSA_id:13325 Gordonia rhizosphera IFO 16247
prokMSA_id:13326 Gordonia bronchialis CIP 1780.88
prokMSA_id:13329 Gordonia bronchialis
prokMSA_id:16517 Gordonia terrae strain COE-O1 
prokMSA_id:17608 Gordonia westfalica strain Kb1/Kb2
prokMSA_id:25110 Gordonia nitida 
prokMSA_id:27224 Gordonia alkalivorans 
prokMSA_id:38169 Gordonia namibiensis NAM-BN063B AF380931
prokMSA_id:41303 Gordonia namibiensis NAM-BN063A AF380930
prokMSA_id:47244 Gordonia alkalivorans 
prokMSA_id:62869 Gordonia terrae AB111113 
prokMSA_id:69925 Gordonia rhizophera strain IFO16068T
prokMSA_id:88069 Gordonia rubripertinctus strain AGP1-3 AY277554
prokMSA_id:96137 Gordonia rubripertinctus strain NCIMB 12566 AJ586615
2.30.1.13.2.1.1191 OTU 6 seqs
prokMSA_id:13296 Gordonia amarae
prokMSA_id:13297 Gordonia amarae. X82243
prokMSA_id:13299 Gordonia amarae str. SE-102 ATCC 27809
prokMSA_id:13300 Gordonia amarae str. ASF3
prokMSA_id:13307 Gordonia amarae str. N667 ATCC 27808
prokMSA_id:13310 Gordonia amarae str. N667 ATCC 27808
2.30.1.13.2.1.1209 OTU 2 seqs
prokMSA_id:32142 Gordonia sp. strain J4
prokMSA_id:48423 Gordonia sp. strain J59 X85243
2.30.1.13.2.1.1518 OTU 1 seq
prokMSA_id:36832 Gordonia spumae strain T4
2.30.1.13.2.1.1567 OTU 1 seq
prokMSA_id:64242 PSRB3 
2.30.1.13.2.1.1645 OTU 1 seq
prokMSA_id:13302 Gordonia hirsuta str. K718a DSM 44140
2.30.1.13.2.1.1891 OTU 1 seq
prokMSA_id:71243 Gordonia sinesedis 
2.30.1.13.2.3 GRD.BRONCHIALIS_SUBGROUP 6 seqs
2.30.1.13.2.3.1545 OTU 1 seq
prokMSA_id:64754 Gordonia sp. FWA92 
2.30.1.13.2.3.1654 OTU 5 seqs
prokMSA_id:13327 Gordonia polyisoprenivorans DSM 44302
prokMSA_id:17721 Gordonia polyisoprenivorans strain VH2
prokMSA_id:25722 Gordonia polyisoprenivorans strain:P8219
prokMSA_id:38457 Gordonia polyisoprenivorans 
prokMSA_id:73085 Gordonia sp. MN 110a isolate MN 110a
2.30.1.13.2.4 SK.PINIFORMIS_SUBGROUP 2 seqs
2.30.1.13.2.4.2022 OTU 2 seqs
prokMSA_id:13330 Skermania piniformis str. UQM3063 IFO 15059
prokMSA_id:46901 Skermania piniformis strain DSM 43998T
2.30.1.13.2.5 WLM.MURALIS_SUBGROUP 3 seqs
2.30.1.13.2.5.1137 OTU 1 seq
prokMSA_id:13333 Williamsia maris strain:SJS0289-JS1
2.30.1.13.2.5.1136 OTU 1 seq
prokMSA_id:13332 Williamsia muralis str. MA140/96
2.30.1.13.2.5.1526 OTU 1 seq
prokMSA_id:41242 Chibacore 1500 
2.30.1.13.2.6 DZ.MARIS_SUBGROUP 15 seqs
2.30.1.13.2.6.1143 OTU 1 seq
prokMSA_id:13338 Rhodococcus sp. str. AC-43
2.30.1.13.2.6.1662 OTU 1 seq
prokMSA_id:34366 Dietzia psychroalcalophilus 
2.30.1.13.2.6.1872 OTU 13 seqs
prokMSA_id:13334 Dietzia maris str. IMV 195; AUCNM-A-593; VKM Ac-593 DSM 4367
prokMSA_id:13335 Dietzia 147 str. 147
prokMSA_id:13337 unnamed organism
prokMSA_id:13339 Dietzia JTS6455-250 str. JTS6455-250
prokMSA_id:13341 Dietzia maris DSM 46102. X79291
prokMSA_id:13342 Dietzia JTS6048-306 str. JTS6048-306
prokMSA_id:13344 Dietzia maris str. IMV 195; AUCNM-A-593; VKM Ac-593 ATCC 350
prokMSA_id:35177 D.maris 
prokMSA_id:77352 Dietzia maris strain SAFR-020 
prokMSA_id:78736 Dietzia sp. 2216.35.9 AB094465
prokMSA_id:81642 Dietzia sp. CR1-3 
prokMSA_id:89054 Dietzia maris strain RE20 AF537361
prokMSA_id:93197 Dietzia maris strain 263 AY360062
2.30.1.13.2.7 COR.XEROSIS_SUBGROUP 16 seqs
2.30.1.13.2.7.1517 OTU 16 seqs
prokMSA_id:13347 Corynebacterium xerosis DSM 20743
prokMSA_id:13348 Corynebacterium xerosis str. 71376
prokMSA_id:13349 Corynebacterium xerosis str. K132
prokMSA_id:13350 Corynebacterium xerosis ATCC 373
prokMSA_id:13352 Corynebacterium asperum CIP 52.13
prokMSA_id:13353 Corynebacterium amycolatum NCFB 2768
prokMSA_id:13354 Corynebacterium Corynebacterium sp. MTcory13R. AF115939
prokMSA_id:13355 Corynebacterium amycolatum CIP 103452
prokMSA_id:13471 Corynebacterium striatum NCTC 764
prokMSA_id:37739 Corynebacterium freneyi strain 20395347
prokMSA_id:45813 Corynebacterium striatum 
prokMSA_id:73485 Corynebacterium freneyi strain 20695110 AJ292762
prokMSA_id:74894 Rhodococcus sp
prokMSA_id:82042 Corynebacterium freneyi strain 116594 
prokMSA_id:83313 Corynebacterium sp. 'Smarlab BioMol-2301292' 
prokMSA_id:86061 Corynebacterium halophilum 
2.30.1.13.2.8 COR.GLUTAMICUM_SUBGROUP 12 seqs
2.30.1.13.2.8.1196 OTU 2 seqs
prokMSA_id:13363 Corynebacterium callunae NCIMB 10338
prokMSA_id:13365 Corynebacterium callunae CCUG 28793
2.30.1.13.2.8.1237 OTU 9 seqs
prokMSA_id:13364 Corynebacterium sp. str. EL-180
prokMSA_id:18481 Corynebacterium efficiens strain:YS-52 AB055964
prokMSA_id:22730 Corynebacterium efficiens strain:YS-314
prokMSA_id:55922 Corynebacterium efficiens YS-314 complete genome NC_004369
prokMSA_id:69308 Corynebacterium efficiens YS-314 complete genome section 10/
prokMSA_id:69327 Corynebacterium efficiens YS-314 complete genome section 9/1
prokMSA_id:70786 Corynebacterium efficiens YS-314 complete genome section 6/1
prokMSA_id:71077 Corynebacterium efficiens strain:YS-155
prokMSA_id:72099 Corynebacterium efficiens YS-314 complete genome section 4/1
2.30.1.13.2.8.1273 OTU 1 seq
prokMSA_id:13361 ATCC 13869
2.30.1.13.2.9 COR.UREALYTICUM_SUBGROUP 65 seqs
2.30.1.13.2.9.1292 OTU 1 seq
prokMSA_id:13366 Corynebacterium urealyticum ATCC 43042
2.30.1.13.2.9.1332 OTU 1 seq
prokMSA_id:13370 Corynebacterium terpenotabidum IFO 14764
2.30.1.13.2.9.1482 OTU 4 seqs
prokMSA_id:13386 Corynebacterium variabilis str. AC 256 DSM 20132
prokMSA_id:13387 Corynebacterium variabilis str. AC 256 DSM 20536
prokMSA_id:13388 LMG 3820
prokMSA_id:43991 Corynebacterium sp. IC10 
2.30.1.13.2.9.1492 OTU 11 seqs
prokMSA_id:13369 Corynebacterium falsenii str. CCUG 33651 DSM 44353
prokMSA_id:13377 Corynebacterium Corynebacterium sp. MTcory14R
prokMSA_id:13380 Corynebacterium jeikeium CIP 103337
prokMSA_id:13419 Corynebacterium pseudogenitalium NCTC 11860. X81872
prokMSA_id:13447 Corynebacterium afermentans str. DMMZ 545 DMMZ 525?. X81874
prokMSA_id:13453 Corynebacterium sp. str. taxon 1 CDC G4330. X81905
prokMSA_id:61783 Corynebacterium appendicis strain DSM 44531T AJ314919
prokMSA_id:64184 Corynebacterium sp. 'Triatoma infestans' 
prokMSA_id:71101 Corynebacterium falsenii isolate 97-0205 
prokMSA_id:73590 Corynebacterium sp. oral strain A43SC AF287754
prokMSA_id:86131 Corynebacterium sp. 2002-2300500 AY244775
2.30.1.13.2.9.1608 OTU 1 seq
prokMSA_id:25532 Corynebacterium testudinoris strain CCUG 41823T
2.30.1.13.2.9.1763 OTU 1 seq
prokMSA_id:13374 Corynebacterium "genitalium" ATCC 33031
2.30.1.13.2.9.1767 OTU 1 seq
prokMSA_id:13375 Corynebacterium jeikeium ATCC 43216
2.30.1.13.2.9.1776 OTU 1 seq
prokMSA_id:13378 Corynebacterium "genitalium" ATCC 33033
2.30.1.13.2.9.1783 OTU 1 seq
prokMSA_id:28246 Corynebacterium bovis strain 101 
2.30.1.13.2.9.1820 OTU 2 seqs
prokMSA_id:13373 Corynebacterium jeikeium ATCC 43734
prokMSA_id:13379 Corynebacterium jeikeium ATCC 43217
2.30.1.13.2.9.1826 OTU 2 seqs
prokMSA_id:13390 Corynebacterium kroppenstedtii CCUG 35717
prokMSA_id:69669 Corynebacterium kroppenstedtii isolate 00-0244 
2.30.1.13.2.9.2035 OTU 2 seqs
prokMSA_id:13371 Corynebacterium auriscanis CCUG 39784
prokMSA_id:19141 Corynebacterium auriscarnis strain CCUG 39783
2.30.1.13.2.9.2059 OTU 37 seqs
prokMSA_id:13381 Corynebacterium bovis NCTC 3224
prokMSA_id:13382 Corynebacterium bovis ATCC 7715
prokMSA_id:13383 Corynebacterium bovis NCTC 3224
prokMSA_id:13384 Corynebacterium bovis str. 5232 and 4428/4
prokMSA_id:17694 Corynebacterium bovis strain 238 
prokMSA_id:19039 Corynebacterium bovis strain 172 
prokMSA_id:21189 Corynebacterium bovis strain 196 
prokMSA_id:21243 Corynebacterium bovis strain 114 
prokMSA_id:23835 Corynebacterium bovis strain 234 
prokMSA_id:23997 Corynebacterium bovis strain 32 
prokMSA_id:24259 Corynebacterium bovis strain 62 
prokMSA_id:26616 Corynebacterium bovis strain 41 
prokMSA_id:27527 Corynebacterium bovis strain 51 
prokMSA_id:30812 Corynebacterium bovis strain 38 
prokMSA_id:31503 Corynebacterium bovis strain 143 
prokMSA_id:33060 Corynebacterium bovis strain 115 
prokMSA_id:34732 Corynebacterium bovis strain 54 
prokMSA_id:34906 Corynebacterium bovis strain 68 
prokMSA_id:35805 Corynebacterium bovis strain 89 
prokMSA_id:35923 Corynebacterium bovis strain 96 
prokMSA_id:37219 Corynebacterium bovis strain 150 
prokMSA_id:37493 Corynebacterium bovis strain 33 
prokMSA_id:37725 Corynebacterium bovis strain 140 
prokMSA_id:37776 Corynebacterium bovis strain 139 
prokMSA_id:38365 Corynebacterium bovis strain 67 
prokMSA_id:43368 Corynebacterium bovis strain 50 
prokMSA_id:43566 Corynebacterium bovis strain 39 
prokMSA_id:44972 Corynebacterium bovis strain 136 
prokMSA_id:45755 Corynebacterium bovis strain 184 
prokMSA_id:45770 Corynebacterium bovis strain 231 
prokMSA_id:46369 Corynebacterium bovis strain 225 
prokMSA_id:47588 Corynebacterium bovis strain 55 
prokMSA_id:48907 Corynebacterium bovis strain 185 
prokMSA_id:51875 Corynebacterium bovis strain 236 
prokMSA_id:52118 Corynebacterium bovis strain 233 
prokMSA_id:74552 Corynebacterium bovis strain 34 
prokMSA_id:75132 Corynebacterium bovis 
2.30.1.13.2.10 COR.PSEUDOTUBERCULOSIS_SUBGROUP 32 seqs
2.30.1.13.2.10.1131 OTU 1 seq
prokMSA_id:13405 Corynebacterium vitarumen NCTC 20294
2.30.1.13.2.10.1327 OTU 3 seqs
prokMSA_id:13395 Corynebacterium diphtheriae NCTC 11397
prokMSA_id:13398 Corynebacterium diphtheriae CIP 100721
prokMSA_id:26734 92 from Patent EP0745691
2.30.1.13.2.10.1455 OTU 3 seqs
prokMSA_id:13396 Corynebacterium durum str. IBS G15036 IBS G15036
prokMSA_id:58295 Corynebacterium durum 
prokMSA_id:71635 Corynebacterium durum isolate 99-0047 
2.30.1.13.2.10.1464 OTU 2 seqs
prokMSA_id:13391 Corynebacterium kutscheri CIP 103423
prokMSA_id:13393 Corynebacterium kutscheri CIP 103423
2.30.1.13.2.10.1500 OTU 2 seqs
prokMSA_id:13418 Corynebacterium argentoratense str. IBS B10697 CIP 104296
prokMSA_id:69384 Corynebacterium argentoratense isolate 98-0075 
2.30.1.13.2.10.1575 OTU 2 seqs
prokMSA_id:13399 Corynebacterium matruchotii DSM 20635
prokMSA_id:43893 Corynebacterium sp. oral clone AK153 
2.30.1.13.2.10.1668 OTU 6 seqs
prokMSA_id:13392 Corynebacterium pseudotuberculosis CIP 52.97
prokMSA_id:13394 Corynebacterium pseudotuberculosis CIP 102968
prokMSA_id:13397 Corynebacterium ulcerans CCUG 2708
prokMSA_id:13400 Corynebacterium ulcerans NCTC 7910
prokMSA_id:13402 Corynebacterium ulcerans CIP 54.53
prokMSA_id:13414 Corynebacterium pseudotuberculosis NCTC 3450
2.30.1.13.2.10.1837 OTU 11 seqs
prokMSA_id:13401 Corynebacterium renale str. HR58
prokMSA_id:13404 Corynebacterium renale str. HR59
prokMSA_id:13410 Corynebacterium renale str. Charita-a CIP 103421
prokMSA_id:13412 Corynebacterium renale str. Charita-a ATCC 19412 . M29553
prokMSA_id:13413 Corynebacterium renale str. Charita-a CIP 103421
prokMSA_id:13415 Corynebacterium renale str. HR57
prokMSA_id:13416 Corynebacterium renale str. HR56
prokMSA_id:69759 Corynebacterium renale strain:HR58
prokMSA_id:70082 Corynebacterium renale strain:HR59
prokMSA_id:71449 Corynebacterium renale strain:HR56
prokMSA_id:72642 Corynebacterium renale strain:HR57
2.30.1.13.2.10.1922 OTU 2 seqs
prokMSA_id:18932 Corynebacterium sp. ATCC43833 
prokMSA_id:33029 Corynebacterium sp. ATCC43833 
2.30.1.13.2.11 COR.AFERMENTANS_SUBGROUP 48 seqs
2.30.1.13.2.11.1089 OTU 5 seqs
prokMSA_id:13423 Corynebacterium mucifaciens DMMZ 2278
prokMSA_id:13431 Corynebacterium Corynebacterium sp. MTcory3P
prokMSA_id:13436 Corynebacterium Corynebacterium sp. MTcory19R
prokMSA_id:72264 Corynebacterium mucifaciens isolate 01-0118 
prokMSA_id:74212 Corynebacterium mucifaciens isolate 87-0436 
2.30.1.13.2.11.1148 OTU 1 seq
prokMSA_id:13442 Corynebacterium sp. str. 1944
2.30.1.13.2.11.1162 OTU 6 seqs
prokMSA_id:13454 Corynebacterium sundsvallense
prokMSA_id:13455 Corynebacterium Corynebacterium sp. MTcory17R
prokMSA_id:13456 Corynebacterium thomssenii
prokMSA_id:69927 Corynebacterium sundsvallense isolate 93-0639 
prokMSA_id:71061 Corynebacterium sundsvallense isolate 99-0121 
prokMSA_id:72293 Corynebacterium thomssenii isolate 97-0130 
2.30.1.13.2.11.1179 OTU 1 seq
prokMSA_id:13449 Corynebacterium "genitalium" ATCC 33034
2.30.1.13.2.11.1205 OTU 1 seq
prokMSA_id:78722 actinobacterium clone EarCan097 
2.30.1.13.2.11.1215 OTU 1 seq
prokMSA_id:13451 Corynebacterium "genitalium" ATCC 33030
2.30.1.13.2.11.1374 OTU 4 seqs
prokMSA_id:13432 Corynebacterium Corynebacterium sp. MTcory5K
prokMSA_id:13434 Corynebacterium Corynebacterium sp. MTcory21R
prokMSA_id:13435 Corynebacterium Corynebacterium sp. MTcory24T
prokMSA_id:82663 Corynebacterium sp. 2002-79006 
2.30.1.13.2.11.1443 OTU 1 seq
prokMSA_id:73330 Corynebacterium coyleae isolate 97-0171 
2.30.1.13.2.11.1558 OTU 1 seq
prokMSA_id:50265 Corynebacterium sp. 61722 
2.30.1.13.2.11.1590 OTU 3 seqs
prokMSA_id:13421 Corynebacterium cystitidis CIP 103424
prokMSA_id:13428 Corynebacterium cystitidis NCTC 11863
prokMSA_id:13440 Corynebacterium cystitidis ATCC 29593
2.30.1.13.2.11.1642 OTU 1 seq
prokMSA_id:13420 Turicella otitidis str. 234/92 DSM 8821
2.30.1.13.2.11.1656 OTU 1 seq
prokMSA_id:13424 Corynebacterium "genitalium" ATCC 33032
2.30.1.13.2.11.1660 OTU 1 seq
prokMSA_id:13427 Corynebacterium Corynebacterium sp. MTcory11W
2.30.1.13.2.11.1698 OTU 3 seqs
prokMSA_id:13422 Corynebacterium afermentans subsp. liphophilum CIP 103500
prokMSA_id:13457 Corynebacterium afermentans subsp. afermentans CIP 103499
prokMSA_id:71216 Corynebacterium afermentans 
2.30.1.13.2.11.1723 OTU 1 seq
prokMSA_id:13439 Corynebacterium sp. str. taxon 2 CDC G5911
2.30.1.13.2.11.1729 OTU 2 seqs
prokMSA_id:13445 Corynebacterium sp. str. 2023
prokMSA_id:69614 Corynebacterium imitans isolate 01-0063 
2.30.1.13.2.11.1737 OTU 1 seq
prokMSA_id:13437 Corynebacterium camporealensis str. CRS-51 CECT 4897
2.30.1.13.2.11.1785 OTU 1 seq
prokMSA_id:25821 Corynebacterium capitovis strain CCUG 39779 strain
2.30.1.13.2.11.1838 OTU 2 seqs
prokMSA_id:13448 Corynebacterium riegelii
prokMSA_id:69866 Corynebacterium riegelii isolate 99-0185 
2.30.1.13.2.11.1840 OTU 1 seq
prokMSA_id:38871 Corynebacterium sp. MT2R 
2.30.1.13.2.11.1930 OTU 2 seqs
prokMSA_id:13441 Corynebacterium mycetoides NCTC 9864
prokMSA_id:13444 Corynebacterium mycetoides
2.30.1.13.2.11.1995 OTU 1 seq
prokMSA_id:78429 clone EarCan096 
2.30.1.13.2.11.2006 OTU 7 seqs
prokMSA_id:13425 Corynebacterium glucuronolyticum str. GF 838 DSM 44120
prokMSA_id:23811 Corynebacterium glucuronolyticum strain COR 232
prokMSA_id:27538 Corynebacterium sp. MT25Y AF115950
prokMSA_id:31488 Corynebacterium sp. MT30Y 
prokMSA_id:38303 Corynebacterium glucuronolyticum strain COR 252
prokMSA_id:73162 Corynebacterium glucuronolyticum isolate 98-0098 
prokMSA_id:74005 Corynebacterium glucuronolyticum isolate 98-0013 
2.30.1.13.2.12 COR.FLAVESCENS_SUBGROUP 11 seqs
2.30.1.13.2.12.1232 OTU 1 seq
prokMSA_id:13458 Corynebacterium ammoniagenes CIP 101283
2.30.1.13.2.12.1247 OTU 1 seq
prokMSA_id:13459 Corynebacterium ammoniagenes CIP 101283
2.30.1.13.2.12.1272 OTU 1 seq
prokMSA_id:13460 Corynebacterium sp. str. EL-68
2.30.1.13.2.12.1281 OTU 1 seq
prokMSA_id:13465 Corynebacterium sp. str. QKT1393-078
2.30.1.13.2.12.1300 OTU 1 seq
prokMSA_id:13468 Corynebacterium pilosum str. 46 Hara ATCC 29592
2.30.1.13.2.12.1303 OTU 1 seq
prokMSA_id:13469 Corynebacterium pilosum str. 46 Hara ATCC 29592
2.30.1.13.2.12.1387 OTU 1 seq
prokMSA_id:50892 Corynebacterium casei LMG S-19264 
2.30.1.13.2.12.1708 OTU 2 seqs
prokMSA_id:13463 Corynebacterium flavescens NCDO 1320
prokMSA_id:13466 Corynebacterium flavescens CIP 69.5
2.30.1.13.2.12.1815 OTU 1 seq
prokMSA_id:13467 Corynebacterium pilosum str. 46 Hara NCTC 11862
2.30.1.13.2.12.2038 OTU 1 seq
prokMSA_id:27896 Corynebacterium sp. B55443 
2.30.1.13.2.13 COR.MINUTISSIMUM_SUBGROUP 16 seqs
2.30.1.13.2.13.1357 OTU 1 seq
prokMSA_id:13478 Corynebacterium 'CDC B8037' CDC B8037
2.30.1.13.2.13.1428 OTU 12 seqs
prokMSA_id:13472 Corynebacterium sp. str. UCL301
prokMSA_id:13476 Corynebacterium singulare str. B52218 IBS B52218
prokMSA_id:13481 Corynebacterium Corynebacterium sp. MTcory1P
prokMSA_id:13482 Corynebacterium Corynebacterium sp. MTcory16R
prokMSA_id:30005 Corynebacterium nigricans sp. nov
prokMSA_id:57711 Corynebacterium aurimucosum strain IMMIB R-222
prokMSA_id:57712 Corynebacterium aurimucosum strain IMMIB D-1488
prokMSA_id:69059 Corynebacterium nigricans isolate 92-0360 
prokMSA_id:70353 Corynebacterium simulans isolate 81-0613 
prokMSA_id:73498 Corynebacterium simulans isolate 00-0186 
prokMSA_id:86381 Corynebacterium nigricans 
prokMSA_id:88549 Corynebacterium nigricans isolate 91-0032 AY321294
2.30.1.13.2.13.1483 OTU 2 seqs
prokMSA_id:13477 Corynebacterium minutissimum str. clone 1 NCTC 10288
prokMSA_id:13479 Corynebacterium minutissimum str. clone 1 NCTC 10288
2.30.1.13.2.13.1844 OTU 1 seq
prokMSA_id:37997 Corynebacterium felinum strain CCUG 39943
2.30.1.13.2.14 COR.MACGINLEYI_SUBGROUP 12 seqs
2.30.1.13.2.14.1192 OTU 11 seqs
prokMSA_id:13483 Corynebacterium macginleyi str. JCL-2 CIP 104099
prokMSA_id:13484 Corynebacterium accolens CCUG 28779
prokMSA_id:13486 Corynebacterium "fastidiosum" CIP 103808
prokMSA_id:13487 Corynebacterium "segmentosum" NCTC 934
prokMSA_id:25485 Corynebacterium sp. MT4P AF115928
prokMSA_id:43077 A3-K1 clone A3-K1 AJ405049
prokMSA_id:67684 Corynebacterium macginleyi 
prokMSA_id:83558 Corynebacterium fastidiosum strain CIP103808
prokMSA_id:83750 Corynebacterium accolens strain CIP104783T
prokMSA_id:83943 Corynebacterium segmentosum strain CIP107068
prokMSA_id:84689 Corynebacterium macginleyi strain CIP104099T
2.30.1.13.2.14.1420 OTU 1 seq
prokMSA_id:13485 Corynebacterium sp. str. MC8
2.30.1.13.2.15 COR.TUBERCULOSTEARICUM_SUBGROUP 22 seqs
2.30.1.13.2.15.1493 OTU 21 seqs
prokMSA_id:13488 Corynebacterium "tuberculostearicum" ATCC 35692
prokMSA_id:13490 Corynebacterium Corynebacterium sp. MTcory2P
prokMSA_id:13491 Corynebacterium Corynebacterium sp. MTcory20R
prokMSA_id:13492 Corynebacterium sp. CDC G5840
prokMSA_id:13494 clone I-109
prokMSA_id:19533 Corynebacterium sp. IrT-R5M2-141 AJ291838
prokMSA_id:22102 Corynebacterium sp. 61720 
prokMSA_id:23875 Corynebacterium sp. MT9M86 AF115953
prokMSA_id:82489 Corynebacterium sp. CIP102346 
prokMSA_id:82584 Corynebacterium sp. CIP107067 
prokMSA_id:82897 Corynebacterium sp. CIP102645 AJ438042
prokMSA_id:83125 Corynebacterium sp. CIP102857 AJ438041
prokMSA_id:83910 Corynebacterium sp. CIP102124 AJ438047
prokMSA_id:84297 Corynebacterium sp. CIP101775 AJ438049
prokMSA_id:84459 Corynebacterium pseudogenitalium strain CIP106714
prokMSA_id:84542 Corynebacterium sp. CIP102211 AJ438046
prokMSA_id:84608 Corynebacterium sp. CIP102590 AJ438044
prokMSA_id:85185 Corynebacterium sp. CIP102076 
prokMSA_id:85890 Corynebacterium sp. CIP102622 
prokMSA_id:86463 Corynebacterium sp. CIP107291 AJ438050
prokMSA_id:89305 clone O-F-5 AF443574
2.30.1.13.2.15.1884 OTU 1 seq
prokMSA_id:13493 Corynebacterium pseudogenitalium ATCC 33035
2.30.1.13.2.16 COR.PSEUDODIPHTHERITICUM_SUBGROUP 11 seqs
2.30.1.13.2.16.1338 OTU 7 seqs
prokMSA_id:13495 Corynebacterium propinquum CIP 103792
prokMSA_id:13496 Corynebacterium propinquum CIP 103792
prokMSA_id:13497 Corynebacterium pseudodiphtheriticum NCTC 11136
prokMSA_id:13498 Corynebacterium pseudodiphtheriticum CIP 103420
prokMSA_id:82696 Corynebacterium pseudodiphthericum strain CIP103420T
prokMSA_id:84553 Rothia mucilaginosa AY244786
prokMSA_id:85717 Corynebacterium propinquum AY244785
2.30.1.13.2.16.1803 OTU 4 seqs
prokMSA_id:13499 Corynebacterium confusum DMMZ 2439 . Y15886
prokMSA_id:13500 Corynebacterium confusum DMMZ 3259
prokMSA_id:60234 Corynebacterium spheniscorum strain CCUG 45512T
prokMSA_id:73184 Corynebacterium confusum isolate 99-0145 
2.30.1.13.3 RCO.RHODOCHROUS_GROUP 38 seqs
2.30.1.13.3.1100 OTU 1 seq
prokMSA_id:34259 Banisveld landfill BVC83 
2.30.1.13.3.1142 OTU 1 seq
prokMSA_id:24660 Rhodococcus sp. IM-43760 
2.30.1.13.3.1176 OTU 1 seq
prokMSA_id:13505 clone TM177
2.30.1.13.3.1350 OTU 10 seqs
prokMSA_id:13503 Rhodococcus ruber DSM 43338
prokMSA_id:13504 Rhodococcus YH1 str. YH1
prokMSA_id:32848 Rhodococcus ruber strain AS4.1187 
prokMSA_id:60987 Rhodococcus sp. An 
prokMSA_id:63346 Rhodococcus ruber strain AS 4.1038 AY114177
prokMSA_id:64675 Rhodococcus sp. USA-AN012 
prokMSA_id:64753 Rhodococcus sp. E33 AY114109
prokMSA_id:67231 Rhodococcus aetherovorans strain Bc663 
prokMSA_id:67233 Rhodococcus aetherovorans strain 10bc312 
prokMSA_id:85556 Rhodococcus ruber M2 AY247275
2.30.1.13.3.1360 OTU 1 seq
prokMSA_id:63301 clone RCP2-103 
2.30.1.13.3.1412 OTU 2 seqs
prokMSA_id:39131 FukuS5 
prokMSA_id:98880 actinobacterium clone SW3 AJ575548
2.30.1.13.3.1861 OTU 1 seq
prokMSA_id:20961 Rhodococcus rhodochrous 
2.30.1.13.3.1940 OTU 21 seqs
prokMSA_id:13508 Rhodococcus sp. str. IBT2679-024. AB010902
prokMSA_id:13512 Rhodococcus rhodochrous ATCC 271 . X81921
prokMSA_id:13513 Rhodococcus rhodochrous DSM 43274
prokMSA_id:13514 Rhodococcus sp. str. LC1
prokMSA_id:13516 Rhodococcus rhodochrous str. 372 CIP 1759.88
prokMSA_id:13517 Rhodococcus rhodochrous str. 372 DSM 43241
prokMSA_id:13527 Rhodococcus sp. str. RHA4. U16317
prokMSA_id:13546 Rhodococcus IFO16253 IFO 16253. AB023374
prokMSA_id:13590 Rhodococcus equi ATCC 33701. D37876
prokMSA_id:23734 Rhodococcus pyridinovorans AF173005
prokMSA_id:43203 Rhodococcus sp. D87092
prokMSA_id:54731 Rhodococcus pyridinivorans strain R04 AF459741
prokMSA_id:55435 Rhodococcus sp. PNAN 5 
prokMSA_id:55547 Rhodococcus sp. PA AJ457068
prokMSA_id:64670 Rhodococcus sp. ARG-BN062 
prokMSA_id:65225 Rhodococcus rhodnii specimen-voucher CNCM 2206 
prokMSA_id:70533 Rhodococcus equi D37876
prokMSA_id:82133 Rhodococcus gordoniae strain W4937 
prokMSA_id:82199 Rhodococcus gordoniae strain MTCC 1534 
prokMSA_id:83971 Rhodococcus sp. AN-22 
prokMSA_id:87677 Rhodococcus sp. T104 AY286493
2.30.1.13.4 RCO.RHODNII_GROUP 4 seqs
2.30.1.13.4.1203 OTU 4 seqs
prokMSA_id:13519 Rhodococcus rhodnii ATCC 35071
prokMSA_id:13520 Rhodococcus rhodnii str. N 443 DSM 43337
prokMSA_id:13521 Rhodococcus rhodnii str. N 445 DSM 43336
prokMSA_id:13522 Rhodococcus rhodnii str. N 444 DSM 43959
2.30.1.13.5 NOC.CORYNEBACTEROIDES_GROUP 6 seqs
2.30.1.13.5.1746 OTU 6 seqs
prokMSA_id:13523 Nocardia corynebacteroides DSM 20151
prokMSA_id:13524 Rhodococcus corynebacteroides CIP 104291. Y07813
prokMSA_id:13525 Rhodococcus corynebacteroides CIP 104294. Y07849
prokMSA_id:32826 Actinobacterium NZ2 
prokMSA_id:75616 Nocardia corynebacterioides strain QBTo AY157677
prokMSA_id:81710 Nocardia corynebacterioides strain DSM 20151 complete 
2.30.1.13.6 RHODOCOCCUS_GROUP 195 seqs
2.30.1.13.6.1 RCO.OPACUS_SUBGROUP 8 seqs
2.30.1.13.6.1.1788 OTU 1 seq
prokMSA_id:13541 Rhodococcus sp
2.30.1.13.6.1.1809 OTU 1 seq
prokMSA_id:37109 Rhodococcus sp. DK17 
2.30.1.13.6.1.1970 OTU 6 seqs
prokMSA_id:44836 Dietzia sp. strain CIP104293
prokMSA_id:65416 clone 799 
prokMSA_id:65421 clone 61 
prokMSA_id:65423 clone 53 
prokMSA_id:65438 clone 10 
prokMSA_id:68351 Dietzia sp. E9_2 E1 oral isolate AF481211
2.30.1.13.6.2 RCO.FASCIANS_SUBGROUP 32 seqs
2.30.1.13.6.2.1999 OTU 32 seqs
prokMSA_id:13577 Rhodococcus fascians
prokMSA_id:13578 Rhodococcus fascians ATCC 35014. X81932
prokMSA_id:13580 Rhodococcus fascians. X79186
prokMSA_id:13581 Rhodococcus fascians str. D188
prokMSA_id:13582 Rhodococcus 5/1 str. 5/1
prokMSA_id:13583 Rhodococcus 5/14 str. 5/14
prokMSA_id:13584 Rhodococcus sp. str. SGB1168-116. AB010907
prokMSA_id:13585 Rhodococcus sp. str. SGB1168-118. AB010908
prokMSA_id:13586 Rhodococcus sp. str. SRB1948-Z40
prokMSA_id:13587 Rhodococcus fascians ATCC 12974
prokMSA_id:18740 Rhodococcus sp. S9 
prokMSA_id:35057 Rhodococcus fascians 
prokMSA_id:37131 Rhodococcus fascians isolate KM6 AJ011329
prokMSA_id:42627 Rhodococcus sp. UFZ-B520 
prokMSA_id:57898 actinobacterium isolate D62 AF544369
prokMSA_id:57900 actinobacterium isolate D57 AF544366
prokMSA_id:57909 actinobacterium isolate D41 AF544355
prokMSA_id:57917 actinobacterium isolate D13 AF544345
prokMSA_id:57923 actinobacterium isolate M41 AF544338
prokMSA_id:59542 CAGY6 strain CAGY6 
prokMSA_id:61955 Rhodococcus sp. V4.ME.27 
prokMSA_id:65222 Rhodococcus sp. YK9 AB070471
prokMSA_id:65243 Rhodococcus sp. YK2 
prokMSA_id:70020 Antarctic seawater R7241 
prokMSA_id:70233 strain R7212
prokMSA_id:70795 Polar sea R7704 
prokMSA_id:73382 Arctic seawater R7851 
prokMSA_id:79369 Rhodococcus sp. MBIC01430 AB088667
prokMSA_id:80384 Rhodococcus sp. P_wp0223 
prokMSA_id:80394 Rhodococcus sp. P_wp0233 
prokMSA_id:89578 Rhodococcus luteus isolate 7Y AJ576249
prokMSA_id:96788 Rhodococcus sp. NAB16 AY395020
2.30.1.13.6.3 RCO.EQUI_SUBGROUP 5 seqs
2.30.1.13.6.3.1163 OTU 5 seqs
prokMSA_id:13588 Corynebacterium hoagii ATCC 7005
prokMSA_id:13593 Rhodococcus equi DSM 20307
prokMSA_id:13594 Rhodococcus equi str. 545 DSM 43199
prokMSA_id:49374 Rhodococcus equi strain CUB1156
prokMSA_id:83293 Rhodococcus equi strain DSM 20307T complete 
2.30.1.13.6.4 NOC.ASTEROIDES_SUBGROUP 150 seqs
2.30.1.13.6.4.1146 OTU 12 seqs
prokMSA_id:13605 Nocardia nova ATCC 33726
prokMSA_id:13621 Nocardia nova str. N1112 JCM 6044
prokMSA_id:13623 Nocardia pseudosporangifera JCM 3288
prokMSA_id:13636 Nocardia otitidiscaviarum ATCC 14629
prokMSA_id:81101 Nocardia nova strain JCM 6044 complete 
prokMSA_id:81390 Nocardia nova strain S559 complete 
prokMSA_id:81683 Nocardia otitidiscaviarum strain S639 complete 
prokMSA_id:82005 Nocardia nova strain S556 complete 
prokMSA_id:82030 Nocardia nova strain DSM 43256 complete 
prokMSA_id:82279 Nocardia sp. DSM 46070 complete 
prokMSA_id:82443 Nocardia otitidiscaviarum strain DSM 43242 complete 
prokMSA_id:88885 Nocardia nova strain ATCC 33726T AY191250
2.30.1.13.6.4.1177 OTU 11 seqs
prokMSA_id:13600 Nocardia carnea str. N1200 DSM 43397
prokMSA_id:13601 Nocardia flavorozea JCM 3332
prokMSA_id:13606 Nocardia carnea ATCC 6847
prokMSA_id:18053 N.asteroides N565 
prokMSA_id:81064 Nocardia sp. DSM 43254 complete 
prokMSA_id:81205 Nocardia flavorosea strain JCM 3342 complete 
prokMSA_id:81484 Nocardia carnea strain DSM 43397 complete 
prokMSA_id:81540 Nocardia sp. DSM 43253 complete 
prokMSA_id:81651 Nocardia carnea strain S547 complete 
prokMSA_id:81678 Nocardia sp. DSM 43576 complete 
prokMSA_id:81766 Nocardia carnea strain DSM 46071 complete 
2.30.1.13.6.4.1261 OTU 1 seq
prokMSA_id:47640 Nocardia caishijiensis 
2.30.1.13.6.4.1287 OTU 4 seqs
prokMSA_id:13614 Nocardia crassostreae str. NB4H C.S. Friedman ATCC 700418
prokMSA_id:13615 Nocardia crassostrae str. RB1. U92799
prokMSA_id:13616 Nocardia crassostrae str. OB3. U92800
prokMSA_id:81719 Nocardia crassostreae strain JCM 10500 complete AF430049
2.30.1.13.6.4.1304 OTU 1 seq
prokMSA_id:63690 Nocardia sp. 99-08-244A 
2.30.1.13.6.4.1321 OTU 1 seq
prokMSA_id:71341 Nocardia devorans strain N1086 
2.30.1.13.6.4.1356 OTU 1 seq
prokMSA_id:46104 Nocardia sp. IM-5391 
2.30.1.13.6.4.1403 OTU 13 seqs
prokMSA_id:13630 Nocardia salmonicida JCM 4826
prokMSA_id:25032 Nocardia sp. R7 
prokMSA_id:33953 Nocardia sp. R441 
prokMSA_id:35733 Nocardia sp. R25 
prokMSA_id:36510 Nocardia sp. W504 
prokMSA_id:44760 Nocardia sp. R47 
prokMSA_id:45989 Nocardia sp. R18 
prokMSA_id:47333 Nocardia sp. W32 
prokMSA_id:48639 Nocardia sp. R147 
prokMSA_id:49884 Nocardia sp. R112 
prokMSA_id:81098 Nocardia sp. DSM 6249 complete 
prokMSA_id:81778 Nocardia fluminea strain DSM 44489 complete 
prokMSA_id:82203 Nocardia salmonicida strain DSM 40472 complete 
2.30.1.13.6.4.1432 OTU 18 seqs
prokMSA_id:13628 Nocardia vaccinii ATCC 11092
prokMSA_id:13632 Nocardia vaccinii str. N1199 DSM 43285
prokMSA_id:13633 Nocardia Y9 str. Y9
prokMSA_id:20332 Nocardia africana AF277198
prokMSA_id:24358 Nocardia veterana 
prokMSA_id:38297 Nocardia africana SD925 AF302230
prokMSA_id:40966 Nocardia africana SD880 
prokMSA_id:43786 Nocardia africana SD910 AF302231
prokMSA_id:55920 Nocardia veterana isolate B430 AY149599
prokMSA_id:81458 Nocardia vaccinii strain DSM 43285 complete 
prokMSA_id:81459 Nocardia veterana strain DSM 40777 complete 
prokMSA_id:82272 Nocardia africana strain DSM 44491 complete 
prokMSA_id:82356 Nocardia veterana strain DSM 44445 complete 
prokMSA_id:83004 Nocardia africana strain DSM 44491 
prokMSA_id:84635 Nocardia veterana strain DSM 43557 complete 
prokMSA_id:85655 Nocardia veterana 
prokMSA_id:89234 Nocardia veterana strain DSM 44445T AY191253
prokMSA_id:89609 Nocardia vaccinii strain ATCC 11092T AY191252
2.30.1.13.6.4.1440 OTU 1 seq
prokMSA_id:20154 ARFS-10 
2.30.1.13.6.4.1454 OTU 5 seqs
prokMSA_id:58653 Nocardia sp. YU011-1 
prokMSA_id:82068 Nocardia sp. DSM 40872 complete 
prokMSA_id:82698 Nocardia sp. IFM 0330 
prokMSA_id:83505 Nocardia sp. IFM 0260 
prokMSA_id:84206 Nocardia sp. IFM 0265 
2.30.1.13.6.4.1552 OTU 5 seqs
prokMSA_id:13629 Nocardia asteroides
prokMSA_id:35195 Nocardia cyriacigeorgici complete 
prokMSA_id:81150 Nocardia cyriacigeorgica strain DSM 44484 complete 
prokMSA_id:81647 Nocardia cyriacigeorgica strain DSM 43005 complete 
prokMSA_id:83908 Nocardia cyriacigeorgica 
2.30.1.13.6.4.1585 OTU 5 seqs
prokMSA_id:31681 Nocardia sp. R32 
prokMSA_id:33810 Nocardia sp. R31 
prokMSA_id:43502 Nocardia sp. R98 
prokMSA_id:48203 Nocardia sp. R11 
prokMSA_id:52632 Nocardia sp. W433 
2.30.1.13.6.4.1600 OTU 6 seqs
prokMSA_id:13647 Nocardia pseudobrasiliensis CIP 92604
prokMSA_id:13649 Nocardia pseudobrasiliensis CDC N249
prokMSA_id:63688 Nocardia sp. 97-21-103A 
prokMSA_id:64359 Nocardia pseudobrasiliensis strain:IFM 10098
prokMSA_id:81200 Nocardia pseudobrasiliensis strain DSM 44290 complete 
prokMSA_id:82307 Nocardia pseudobrasiliensis strain JCM 9883 complete 
2.30.1.13.6.4.1696 OTU 6 seqs
prokMSA_id:13617 Nocardia asteroides str. M. Goodfellow N317 ATCC 19247
prokMSA_id:13624 Nocardia asteroides DSM 43757
prokMSA_id:13635 Nocardia asteroides str. M. Goodfellow N317 ATCC 19247
prokMSA_id:19866 Nocardia sp. 4.1177 
prokMSA_id:82196 Nocardia asteroides strain DSM 43757 complete 
prokMSA_id:82420 Nocardia asteroides strain DSM 43255 complete 
2.30.1.13.6.4.1769 OTU 1 seq
prokMSA_id:82059 Nocardia sp. DSM 46067 complete 
2.30.1.13.6.4.1787 OTU 2 seqs
prokMSA_id:13622 Nocardia MK703-102F1 str. MK703-102F1
prokMSA_id:82429 Nocardia pseudovaccinii strain DSM 43406 complete 
2.30.1.13.6.4.1805 OTU 5 seqs
prokMSA_id:22010 Nocardia sp. W148 
prokMSA_id:22063 Nocardia sp. S24 
prokMSA_id:37262 Nocardia sp. R86 
prokMSA_id:47624 Nocardia sp. R133 
prokMSA_id:54743 Nocardia ignorata strain DSM 44496
2.30.1.13.6.4.1834 OTU 8 seqs
prokMSA_id:13602 Nocardia transvalensis ATCC 6865
prokMSA_id:13638 Nocardia transvalensis str. N1202 DSM 43405
prokMSA_id:13639 Nocardia transvalensis str. N1202 DSM 43405
prokMSA_id:22413 N.transvalensis N1045 
prokMSA_id:34077 N.transvalensis N630 
prokMSA_id:82063 Nocardia transvalensis strain DSM 43405 complete AF430047
prokMSA_id:92185 Nocardia transvalensis strain:IFM 10065 AB084448
prokMSA_id:92434 Nocardia transvalensis strain:IFM 0998 AB084447
2.30.1.13.6.4.1917 OTU 23 seqs
prokMSA_id:13604 Nocardia farcinica
prokMSA_id:13608 Nocardia otitidiscaviarum
prokMSA_id:13609 Nocardia amycolata str. AS4.1521T
prokMSA_id:13610 Nocardia farcinica str. GD1
prokMSA_id:13611 Nocardia farcinica
prokMSA_id:13619 Nocardia farcinica str. M. Goodfellow N898 ATCC 3318
prokMSA_id:13627 Nocardia asteroides ATCC 23824
prokMSA_id:29160 N.asteroides N488 
prokMSA_id:40151 N.asteroides N450 
prokMSA_id:43592 N.transvalensis N1080 
prokMSA_id:48062 N.transvalensis N1082 
prokMSA_id:48486 N.asteroides N206 
prokMSA_id:50336 N.transvalensis N1408 
prokMSA_id:75323 Nocardia sp. IFM 0860 
prokMSA_id:75424 Nocardia sp. IFM 0425 
prokMSA_id:76153 Nocardia sp. IFM 0245 
prokMSA_id:79112 Nocardia sp. ATCC 49872 complete 
prokMSA_id:81174 Nocardia asteroides strain DSM 43258 complete 
prokMSA_id:81217 Nocardia farcinica strain DSM 43665 complete 
prokMSA_id:82387 Nocardia farcinica strain S560 complete 
prokMSA_id:84366 Nocardia alba 
prokMSA_id:84484 Nocardia sp. IFM 0299 
prokMSA_id:86269 Nocardia puris strain IMMIB R-145T
2.30.1.13.6.4.1927 OTU 5 seqs
prokMSA_id:13603 Nocardia brevicatena str. N1201 DSM 43024
prokMSA_id:13641 Nocardia brevicatena ATCC 15333
prokMSA_id:25440 Nocardia paucivorans complete 
prokMSA_id:81432 Nocardia brevicatena strain DSM 43024 complete 
prokMSA_id:82341 Nocardia paucivorans strain DSM 44386 complete 
2.30.1.13.6.4.1948 OTU 1 seq
prokMSA_id:40439 Nocardia soli 
2.30.1.13.6.4.2048 OTU 11 seqs
prokMSA_id:13637 Nocardia uniformis JCM 3224
prokMSA_id:21724 N.asteroides N569 
prokMSA_id:36906 Nocardia novocastrensa strain N1251 
prokMSA_id:66022 Nocardia seriolae strain NA2 
prokMSA_id:74674 Nocardia sp. 7031 AF219974
prokMSA_id:81184 Nocardia uniformis strain DSM 43136 complete 
prokMSA_id:81660 Nocardia sp. DSM 43301 complete AF430056
prokMSA_id:81707 Nocardia sp. DSM 43395 complete 
prokMSA_id:81999 Nocardia sp. DSM 43260 complete 
prokMSA_id:84646 Nocardia tenerifenis 
prokMSA_id:90115 Nocardia neocaledonica AY282603
2.30.1.13.6.4.2052 OTU 4 seqs
prokMSA_id:13631 Nocardia brasiliensis
prokMSA_id:13640 Nocardia brasiliensis str. M. Goodfellow N318 ATCC 19296
prokMSA_id:81612 Nocardia brasiliensis strain DSM 43758 complete 
prokMSA_id:83250 Nocardia brasiliensis 
2.30.2 THERMOANAEROBACTER_AND_RELATIVES 301 seqs
2.30.2.1 DFM.GEOTHERMICUM_GROUP 69 seqs
2.30.2.1.2316 OTU 1 seq
prokMSA_id:13666 str. sporeB
2.30.2.1.2318 OTU 1 seq
prokMSA_id:13669 Desulfotomaculum kuznetsovii
2.30.2.1.2320 OTU 1 seq
prokMSA_id:71619 Desulfotomaculum sp. 175 
2.30.2.1.2317 OTU 1 seq
prokMSA_id:13667 Sporotomaculum hydroxybenzoicum str. BT DSM 5475
2.30.2.1.2324 OTU 2 seqs
prokMSA_id:83718 clone:AHU18
prokMSA_id:84932 clone:ALU27
2.30.2.1.2334 OTU 1 seq
prokMSA_id:13673 clone WFeA1-02
2.30.2.1.2336 OTU 1 seq
prokMSA_id:13674 clone WCHB1-89
2.30.2.1.2337 OTU 1 seq
prokMSA_id:13675 clone WCHA1-17
2.30.2.1.2342 OTU 2 seqs
prokMSA_id:13652 Desulfotomaculum geothermicum str. BSD DSM 3669
prokMSA_id:47128 Desulfotomaculum geothermicum strain DSM 3669
2.30.2.1.2343 OTU 1 seq
prokMSA_id:13676 clone EKHO-6
2.30.2.1.2345 OTU 1 seq
prokMSA_id:13678 Desulfotomaculum acetoxidans str. 5575 DSM 771
2.30.2.1.2351 OTU 4 seqs
prokMSA_id:13671 Desulfotomaculum thermobenzoicum str. TSB DSM 6193
prokMSA_id:13677 Desulfotomaculum sp. DSM 7476
prokMSA_id:30024 Desulfotomaculum sp. DSM 7474
prokMSA_id:51349 Desulfotomaculum thermobenzoicum strain DSM 6193 clone 11
2.30.2.1.2352 OTU 2 seqs
prokMSA_id:27652 NoosaAW44 
prokMSA_id:47626 TM7LH12 
2.30.2.1.2359 OTU 1 seq
prokMSA_id:60016 clone:JP
2.30.2.1.2373 OTU 1 seq
prokMSA_id:79013 clone 1026B236 
2.30.2.1.2371 OTU 3 seqs
prokMSA_id:13682 Desulfotomaculum sp. DSM 7213
prokMSA_id:34816 Desulfotomaculum sp. DSM 7213 strain DSM 7213 clone 10
prokMSA_id:38022 Desulfotomaculum sp. DSM 7213 strain DSM 7213 clone 19A
2.30.2.1.2378 OTU 1 seq
prokMSA_id:23108 MERTZ_2CM_174 
2.30.2.1.2388 OTU 1 seq
prokMSA_id:25424 low G+C Gram-positive YNPRH70A 
2.30.2.1.2390 OTU 1 seq
prokMSA_id:30331 Thermophilic propionate-oxidizing SI 
2.30.2.1.2392 OTU 1 seq
prokMSA_id:38532 Desulfotomaculum sp. DEM-KMe99-1 
2.30.2.1.2409 OTU 1 seq
prokMSA_id:42719 Toluene-degrading methanogenic consortium Eub 1 
2.30.2.1.2414 OTU 1 seq
prokMSA_id:51740 Desulfotomaculum sp. DSM 7213 strain DSM 7213 clone 14
2.30.2.1.2420 OTU 1 seq
prokMSA_id:73391 Desulfotomaculum sp. 176 
2.30.2.1.2429 OTU 1 seq
prokMSA_id:73970 Natronoanaerobium halophilum isolate G-M14CH-4
2.30.2.1.2433 OTU 2 seqs
prokMSA_id:17524 Ferribacter thermoautotrophicus strain JW/JH-Fiji-2 
prokMSA_id:21124 Ferribacter thermoautotrophicus clone KA2a 
2.30.2.1.2432 OTU 3 seqs
prokMSA_id:86129 clone:AHU09
prokMSA_id:86580 clone:AHU08
prokMSA_id:86590 clone:ALU17
2.30.2.1.2430 OTU 1 seq
prokMSA_id:22769 Symbiobacterium sp. MN13 
2.30.2.1.2443 OTU 1 seq
prokMSA_id:13655 Desulfotomaculum thermoacetoxidans str. CAMZ DSM 5813
2.30.2.1.2451 OTU 2 seqs
prokMSA_id:23520 Natronoanaerobium salstagnum isolate O-M12SP-2
prokMSA_id:72206 Natronoanaerobium aggerbacterium isolate G-M16NWC-4 AJ271452
2.30.2.1.2458 OTU 1 seq
prokMSA_id:23525 Desulfotomaculum sp. Mechichi-2001 
2.30.2.1.2465 OTU 1 seq
prokMSA_id:13653 clone M4
2.30.2.1.2470 OTU 1 seq
prokMSA_id:13654 Desulfotomaculum luciae str. SLT SMCC W644
2.30.2.1.2473 OTU 1 seq
prokMSA_id:13656 Desulfotomaculum sp. DSM 7475
2.30.2.1.2476 OTU 1 seq
prokMSA_id:17431 Sporotomaculum syntrophicum 
2.30.2.1.2477 OTU 1 seq
prokMSA_id:13657 Desulfotomaculum australicum str. AB33 ACM 3917
2.30.2.1.2480 OTU 1 seq
prokMSA_id:13659 Desulfotomaculum halophilum SEBR 3139
2.30.2.1.2482 OTU 1 seq
prokMSA_id:37250 Desulfotomaculum sp. DEM-KMe99-2 
2.30.2.1.2490 OTU 5 seqs
prokMSA_id:20277 Desulfotomaculum kuznetsovii strain 17 rrnB complete 
prokMSA_id:29438 Desulfotomaculum kuznetsovii strain DSM 6115
prokMSA_id:45024 Desulfotomaculum kuznetsovii strain 17 complete AY036903
prokMSA_id:47271 Desulfotomaculum sp. WW1 AF442687
prokMSA_id:67543 Desulfotomaculum sp. V21 complete 
2.30.2.1.2494 OTU 4 seqs
prokMSA_id:30367 Desulfotomaculum sp. DEM-KMe98-4 
prokMSA_id:41122 Desulfotomaculum sp. DEM-KMe98-7 
prokMSA_id:51415 Desulfotomaculum sp. DEM-KMe98-8 
prokMSA_id:74775 Desulfotomaculum sp. DEM-KMe98-5 
2.30.2.1.2496 OTU 2 seqs
prokMSA_id:13664 Desulfotomaculum thermosapovorans str. MLF DSM 6562
prokMSA_id:13681 Desulfotomaculum thermosapovorans str. MLF DSM 6562
2.30.2.1.2507 OTU 1 seq
prokMSA_id:34470 Desulfotomaculum sp. DEM-KMe99-3 
2.30.2.1.2514 OTU 1 seq
prokMSA_id:68349 Firmicutes oral clone MCE7_107 E1 
2.30.2.1.2519 OTU 1 seq
prokMSA_id:71451 clone clB70 
2.30.2.1.2518 OTU 1 seq
prokMSA_id:70079 clone clB14 
2.30.2.1.2530 OTU 2 seqs
prokMSA_id:13683 str. strain 7
prokMSA_id:89131 Anaerobic LR7.2 complete AY327251
2.30.2.1.2541 OTU 1 seq
prokMSA_id:60012 clone:UT-2
2.30.2.1.2552 OTU 1 seq
prokMSA_id:21704 TGO complete 
2.30.2.1.2557 OTU 1 seq
prokMSA_id:13661 Desulfotomaculum thermobenzoicum
2.30.2.2 SYNTROPHOMONAS_ASSEMBLAGE 16 seqs
2.30.2.2.2319 OTU 1 seq
prokMSA_id:45167 Anaerobranca bogoriae complete 
2.30.2.2.2350 OTU 1 seq
prokMSA_id:24677 Anaerobranca californiensis strain Paoha-1 
2.30.2.2.2361 OTU 1 seq
prokMSA_id:13687 Syntrophomonas MGB-C1 str. MGB-C1
2.30.2.2.2362 OTU 1 seq
prokMSA_id:13688 Syntrophomonas wolfei str. LYB
2.30.2.2.2381 OTU 1 seq
prokMSA_id:34976 RFLP11 
2.30.2.2.2384 OTU 1 seq
prokMSA_id:26077 Saltmarsh clone LCP-89 
2.30.2.2.2406 OTU 3 seqs
prokMSA_id:24671 TCE4 AF349760
prokMSA_id:77374 clone R6b2 
prokMSA_id:86052 low G+C Gram-positive clone G1-6 AY280638
2.30.2.2.2456 OTU 1 seq
prokMSA_id:77473 clone R4b14 
2.30.2.2.2467 OTU 1 seq
prokMSA_id:13691 str. TGB-C1
2.30.2.2.2481 OTU 1 seq
prokMSA_id:34346 Pelospora glutarica strain WoGl3
2.30.2.2.2483 OTU 1 seq
prokMSA_id:62405 Gram-positive clone FTLM142 
2.30.2.2.2536 OTU 1 seq
prokMSA_id:13685 clone WCHB1-71
2.30.2.2.2543 OTU 1 seq
prokMSA_id:72821 clone B8 
2.30.2.2.2555 OTU 1 seq
prokMSA_id:13690 clone WCHB1-82
2.30.2.3 MOORELLA_GROUP 47 seqs
2.30.2.3.2338 OTU 1 seq
prokMSA_id:79090 clone JG30-KF-A11
2.30.2.3.2365 OTU 2 seqs
prokMSA_id:13708 Moorella glycerini str. JW/AS-Y6 DSM 11254
prokMSA_id:82633 Moorella sp. TMS 
2.30.2.3.2368 OTU 4 seqs
prokMSA_id:13697 Moorella thermoautotrophica
prokMSA_id:13703 Moorella thermoacetica str. ET-5a
prokMSA_id:13704 Moorella thermoautotrophica str. JW 701/3 DSM 1974
prokMSA_id:75104 Moorella sp. F21 cds
2.30.2.3.2380 OTU 1 seq
prokMSA_id:83693 clone B03R012 
2.30.2.3.2382 OTU 1 seq
prokMSA_id:75551 clone JG37-AG-4
2.30.2.3.2394 OTU 1 seq
prokMSA_id:13702 clone ACE-45
2.30.2.3.2393 OTU 1 seq
prokMSA_id:13701 clone BURTON-4
2.30.2.3.2391 OTU 1 seq
prokMSA_id:22245 clone BA021 complete 
2.30.2.3.2398 OTU 1 seq
prokMSA_id:63105 clone MB-C2-106 
2.30.2.3.2403 OTU 1 seq
prokMSA_id:13709 clone KTK 14
2.30.2.3.2407 OTU 1 seq
prokMSA_id:27974 thermal soil clone YNPFFP2 
2.30.2.3.2411 OTU 1 seq
prokMSA_id:13713 clone GCA018
2.30.2.3.2416 OTU 1 seq
prokMSA_id:19248 AT425_EubA5 
2.30.2.3.2424 OTU 1 seq
prokMSA_id:13710 clone TAYNAYA-2
2.30.2.3.2422 OTU 1 seq
prokMSA_id:13719 str. JTB138
2.30.2.3.2426 OTU 1 seq
prokMSA_id:13711 clone ACE-5
2.30.2.3.2427 OTU 1 seq
prokMSA_id:13712 clone OPB54
2.30.2.3.2437 OTU 1 seq
prokMSA_id:62682 low G+C Gram-positive clone ML623J-19 
2.30.2.3.2435 OTU 1 seq
prokMSA_id:13715 clone SB-15
2.30.2.3.2440 OTU 1 seq
prokMSA_id:13718 clone ST12
2.30.2.3.2439 OTU 1 seq
prokMSA_id:13717 str. PB
2.30.2.3.2454 OTU 1 seq
prokMSA_id:28429 clone 12-31 
2.30.2.3.2472 OTU 1 seq
prokMSA_id:13698 clone I025
2.30.2.3.2474 OTU 1 seq
prokMSA_id:13699 clone TAYNAYA-18
2.30.2.3.2489 OTU 1 seq
prokMSA_id:85667 clone B01R005 
2.30.2.3.2491 OTU 9 seqs
prokMSA_id:13714 clone GCA025
prokMSA_id:13716 clone SB-45
prokMSA_id:13720 str. JTB243
prokMSA_id:63112 clone MB-B2-103 
prokMSA_id:63127 clone MA-A2-104 
prokMSA_id:77784 clone Hyd01-10
prokMSA_id:86362 clone B04R002 
prokMSA_id:96092 Gram-positive clone GoM GC234 602E AY211673
prokMSA_id:96510 Gram-positive clone GoM GC234 019E AY211667
2.30.2.3.2506 OTU 1 seq
prokMSA_id:38927 CLEAR-6 
2.30.2.3.2513 OTU 1 seq
prokMSA_id:74641 low G+C Gram-positive clone ML635J-9 
2.30.2.3.2535 OTU 1 seq
prokMSA_id:74279 C1_B023 
2.30.2.3.2537 OTU 1 seq
prokMSA_id:63782 Verrucomicrobia clone LD1-PA39 
2.30.2.3.2542 OTU 1 seq
prokMSA_id:56514 soil clone C062 
2.30.2.3.2545 OTU 3 seqs
prokMSA_id:82872 Anaerobic syntrophic OL AB106354
prokMSA_id:83916 Anaerobic syntrophic JL AB106353
prokMSA_id:85421 Anaerobic syntrophic JE 
2.30.2.3.2547 OTU 1 seq
prokMSA_id:72683 CS_B013 
2.30.2.4 TAR.MARIANENSIS_GROUP 12 seqs
2.30.2.4.2353 OTU 1 seq
prokMSA_id:31896 actinobacterium clone R171 
2.30.2.4.2360 OTU 1 seq
prokMSA_id:49727 actinobacterium MERTZ_21CM_395 
2.30.2.4.2436 OTU 1 seq
prokMSA_id:13721 Thermaerobacter marianensis str. 7p75a
2.30.2.4.2462 OTU 1 seq
prokMSA_id:13722 unnamed organism
2.30.2.4.2466 OTU 1 seq
prokMSA_id:13727 str. JTB326
2.30.2.4.2464 OTU 1 seq
prokMSA_id:13726 str. BD7-2
2.30.2.4.2493 OTU 2 seqs
prokMSA_id:22146 Thermaerobacter subterraneus complete 
prokMSA_id:50462 Thermaerobacter nagasakiense 
2.30.2.4.2517 OTU 1 seq
prokMSA_id:36253 actinobacterium MERTZ_2CM_192 
2.30.2.4.2516 OTU 1 seq
prokMSA_id:62410 Gram-positive clone FTL22 
2.30.2.4.2520 OTU 1 seq
prokMSA_id:86373 delta clone DBBB-60 
2.30.2.4.2554 OTU 1 seq
prokMSA_id:60181 clone TK19
2.30.2.5 DICTYOGLOMUS_GROUP 108 seqs
2.30.2.5.1 TTR.FERRIREDUCENS_SUBGROUP 3 seqs
2.30.2.5.1.2471 OTU 1 seq
prokMSA_id:13728 Thermoterrabacterium ferrireducens
2.30.2.5.1.2475 OTU 1 seq
prokMSA_id:13729 clone WCHA1-37
2.30.2.5.1.2544 OTU 1 seq
prokMSA_id:13730 Thermoterrabacterium ferrireducens
2.30.2.5.3 DGL.THERMOPHILUM_SUBGROUP 5 seqs
2.30.2.5.3.2309 OTU 1 seq
prokMSA_id:13736 clone OPS61
2.30.2.5.3.2313 OTU 1 seq
prokMSA_id:13737 clone OPS145
2.30.2.5.3.2355 OTU 2 seqs
prokMSA_id:13733 Dictyoglomus thermophilum str. Rt46B.1
prokMSA_id:13735 Dictyoglomus thermophilum str. H-6-12 DSM 3960
2.30.2.5.3.2546 OTU 1 seq
prokMSA_id:13732 Dictyoglomus sp. str. Rt46-B1
2.30.2.5.4 ENVIRONMENTAL_CLONE_OPB9_SUBGROUP 7 seqs
2.30.2.5.4.2325 OTU 1 seq
prokMSA_id:13740 clone BPC110
2.30.2.5.4.2369 OTU 2 seqs
prokMSA_id:13738 clone OPB9
prokMSA_id:13739 clone OPB34
2.30.2.5.4.2399 OTU 1 seq
prokMSA_id:82558 clone CCM2b 
2.30.2.5.4.2449 OTU 1 seq
prokMSA_id:17280 clone BA068 complete 
2.30.2.5.4.2450 OTU 1 seq
prokMSA_id:75029 Chlorobi clone Sh765B-TzT/AG-5
2.30.2.5.4.2509 OTU 1 seq
prokMSA_id:46370 UASB_TL84 complete 
2.30.2.5.5 DH.ETHENOGENES_SUBGROUP 79 seqs
2.30.2.5.5.2314 OTU 1 seq
prokMSA_id:33361 green nonsulfur MERTZ_2CM_4 
2.30.2.5.5.2321 OTU 1 seq
prokMSA_id:24666 green nonsulfur MERTZ_2CM_250 
2.30.2.5.5.2330 OTU 1 seq
prokMSA_id:13742 clone ACE-22
2.30.2.5.5.2331 OTU 1 seq
prokMSA_id:13743 clone vadinBA26
2.30.2.5.5.2333 OTU 2 seqs
prokMSA_id:13746 clone H1.4.f
prokMSA_id:73071 H1.4.f AF005748
2.30.2.5.5.2335 OTU 1 seq
prokMSA_id:13747 clone t0.6.f
2.30.2.5.5.2341 OTU 1 seq
prokMSA_id:13749 clone RB21
2.30.2.5.5.2339 OTU 1 seq
prokMSA_id:77206 Chlorobi clone Sh765B-TzT-20
2.30.2.5.5.2348 OTU 2 seqs
prokMSA_id:13744 clone t0.8.f
prokMSA_id:74334 t0.8.f 
2.30.2.5.5.2349 OTU 1 seq
prokMSA_id:31890 clone GIF9 
2.30.2.5.5.2354 OTU 2 seqs
prokMSA_id:13748 clone H3.93
prokMSA_id:70341 H3.93 
2.30.2.5.5.2363 OTU 1 seq
prokMSA_id:41231 DF-1 
2.30.2.5.5.2367 OTU 1 seq
prokMSA_id:63109 clone MB-B2-113 
2.30.2.5.5.2370 OTU 43 seqs
prokMSA_id:18518 CBDB1 
prokMSA_id:18992 Dehalococcoides sp. clone DHC-bmtp 
prokMSA_id:19679 DCE17 
prokMSA_id:20043 Dehalococcoides sp. clone DHC-lnz 
prokMSA_id:22470 Dehalococcoides sp. clone DHC-kafb AF388537
prokMSA_id:23297 clone 5G 
prokMSA_id:25537 Dehalococcoides sp. clone DHC-nftx AF388546
prokMSA_id:25968 Dehalococcoides sp. clone DHC-kb1C AF388539
prokMSA_id:26309 Dehalococcoides sp. clone DHC-lf13 AF388542
prokMSA_id:29355 Dehalococcoides sp. FL2 
prokMSA_id:29714 clone 12G 
prokMSA_id:31094 Dehalococcoides sp. clone DHC-kb1P AF388540
prokMSA_id:31301 Dehalococcoides sp. clone DHC-asd AF388530
prokMSA_id:31803 Dehalococcoides sp. clone DHC-dll AF388536
prokMSA_id:33280 Dehalococcoides sp. clone DHC-plk 
prokMSA_id:34971 Dehalococcoides sp. clone DHC-chd 
prokMSA_id:39818 Dehalococcoides sp. clone DHC-bmtv 
prokMSA_id:41208 clone 8a 
prokMSA_id:45038 Dehalococcoides sp. clone DHC-vic 
prokMSA_id:45091 Dehalococcoides sp. clone DHC-pin AF388548
prokMSA_id:45746 Dehalococcoides sp. clone DHC-klf 
prokMSA_id:48395 Dehalococcoides sp. clone DHC-dab AF388535
prokMSA_id:48806 clone 4D 
prokMSA_id:50281 Dehalococcoides sp. clone DHC-bmtc 
prokMSA_id:51551 clone 5H 
prokMSA_id:55484 Dehalococcoides sp. clone ccslm5 
prokMSA_id:56507 Dehalococcoides sp. Pinellas AY146781
prokMSA_id:59912 Dehalococcoides sp. clone ccslm202 
prokMSA_id:62397 Dehalococcoides sp. clone FTLM182 
prokMSA_id:71949 DCEH2 
prokMSA_id:73418 Dehalococcoides sp. KB-1/PCE AY146780
prokMSA_id:73942 Dehalococcoides sp. KB-1/VC AY146779
prokMSA_id:74423 Dehalococcoides ethenogenes 
prokMSA_id:76593 Dehalococcoides sp. BAV1 
prokMSA_id:79135 Dehalococcoides sp. clone AKS31 
prokMSA_id:79207 Dehalococcoides sp. clone ARC61 
prokMSA_id:79293 Dehalococcoides sp. clone AKS14 
prokMSA_id:79375 Dehalococcoides sp. clone ARC18 
prokMSA_id:79443 Dehalococcoides sp. clone ARC13 
prokMSA_id:82039 MTCE-T2 4A 
prokMSA_id:82136 MTCE-T2 10H 
prokMSA_id:88839 VS AY323233
prokMSA_id:92766 Dehalococcoides sp. clone M7B1 AY351859
2.30.2.5.5.2385 OTU 1 seq
prokMSA_id:74881 Chlorobi clone Sh765B-AG-111
2.30.2.5.5.2397 OTU 1 seq
prokMSA_id:63104 clone MB-C2-127 
2.30.2.5.5.2396 OTU 1 seq
prokMSA_id:28770 green nonsulfur MERTZ_0CM_109 
2.30.2.5.5.2401 OTU 1 seq
prokMSA_id:42208 PENDANT-35 
2.30.2.5.5.2418 OTU 1 seq
prokMSA_id:35933 clone GIF3 
2.30.2.5.5.2428 OTU 1 seq
prokMSA_id:16981 RFLP17 
2.30.2.5.5.2425 OTU 1 seq
prokMSA_id:31352 clone Car147fc 
2.30.2.5.5.2438 OTU 1 seq
prokMSA_id:63120 clone MB-A2-110 
2.30.2.5.5.2445 OTU 1 seq
prokMSA_id:63128 clone MB-A2-103 
2.30.2.5.5.2484 OTU 1 seq
prokMSA_id:63106 clone MB-C2-126 
2.30.2.5.5.2485 OTU 1 seq
prokMSA_id:63214 clone FW22 
2.30.2.5.5.2487 OTU 1 seq
prokMSA_id:76182 Chlorobi clone Sh765B-TzT-6
2.30.2.5.5.2488 OTU 1 seq
prokMSA_id:75600 Chlorobi clone Sh765B-AG-130
2.30.2.5.5.2497 OTU 1 seq
prokMSA_id:74169 clone FW60 
2.30.2.5.5.2499 OTU 1 seq
prokMSA_id:49414 green non-sulfur MT61 
2.30.2.5.5.2523 OTU 2 seqs
prokMSA_id:56484 clone TK30
prokMSA_id:60159 clone TK10 AJ347055
2.30.2.5.5.2539 OTU 1 seq
prokMSA_id:82007 clone KD4-96 
2.30.2.5.5.2551 OTU 1 seq
prokMSA_id:36910 green nonsulfur MERTZ_21CM_329 
2.30.2.5.5.2553 OTU 1 seq
prokMSA_id:53827 clone RA13C7 
2.30.2.5.6 ENVIRONMENTAL_CLONE_SAR202_SUBGROUP 14 seqs
2.30.2.5.6.2312 OTU 1 seq
prokMSA_id:21495 Chloroflexaceae group Arctic95A-18 
2.30.2.5.6.2315 OTU 1 seq
prokMSA_id:23743 clone R177 
2.30.2.5.6.2323 OTU 1 seq
prokMSA_id:30149 marine pN1-52 
2.30.2.5.6.2344 OTU 1 seq
prokMSA_id:65684 soil clone C083 
2.30.2.5.6.2356 OTU 1 seq
prokMSA_id:13750 Sargasso Sea Bermuda Atlantic Time-Series Study clone SAR 30
2.30.2.5.6.2357 OTU 1 seq
prokMSA_id:13752 clone WS52f
2.30.2.5.6.2358 OTU 1 seq
prokMSA_id:13753 Sargasso Sea Bermuda Atlantic Time-Series Study clone SAR 20
2.30.2.5.6.2495 OTU 2 seqs
prokMSA_id:44260 Crater Lake CL500-9 
prokMSA_id:69005 Crater Lake CL500-10 
2.30.2.5.6.2511 OTU 2 seqs
prokMSA_id:13754 clone H1.2.f. AF005747
prokMSA_id:74429 H1.2.f 
2.30.2.5.6.2534 OTU 1 seq
prokMSA_id:65691 soil clone S085 
2.30.2.5.6.2532 OTU 1 seq
prokMSA_id:74658 Chloroflexi clone FTL276 
2.30.2.5.6.2556 OTU 1 seq
prokMSA_id:78515 clone JG30-KF-CM66
2.30.2.6 THERMOANAEROBACTER_GROUP 49 seqs
2.30.2.6.1 TBM.THERMOSULFURIGENES_SUBGROUP 8 seqs
2.30.2.6.1.2366 OTU 2 seqs
prokMSA_id:36077 tbr4-78 
prokMSA_id:36399 tbr1-8 
2.30.2.6.1.2441 OTU 3 seqs
prokMSA_id:13755 Thermoanaerobacterium xylanolyticum str. LX-II DSM 7097 . L0
prokMSA_id:13757 Thermoanaerobacterium thermosulfurigenes str. 4B ATCC 33743
prokMSA_id:13760 Thermoanaerobium "lactoethylicum" str. ZE-1 DSM 9003
2.30.2.6.1.2453 OTU 1 seq
prokMSA_id:27592 Thermoanaerobacterium thermosaccharolyticum strain D120-70 c
2.30.2.6.1.2461 OTU 1 seq
prokMSA_id:13763 Thermoanaerobacterium aotearoense str. JW/SL-NZ613
2.30.2.6.1.2459 OTU 1 seq
prokMSA_id:13761 Thermoanaerobacterium saccharolyticum str. B6A-RI; B6A DSM 7
2.30.2.6.2 THERMOANAEROBACTER.KIVUI 2 seqs
2.30.2.6.2.2400 OTU 1 seq
prokMSA_id:34323 Clostridium uzonii strain DSM 9752
2.30.2.6.2.2468 OTU 1 seq
prokMSA_id:13765 Thermoanaerobacter kivui DSM 2030
2.30.2.6.3 TAB.ETHANOLICUS_SUBGROUP 15 seqs
2.30.2.6.3.2347 OTU 7 seqs
prokMSA_id:13775 clone KTK 27
prokMSA_id:13776 clone KTK 41
prokMSA_id:22143 KB1 group clone ST-3K7
prokMSA_id:32063 KB1 group clone ST-12K21
prokMSA_id:32158 KB1 group clone ST-3K22
prokMSA_id:40722 KB1 group clone ST-12K35
prokMSA_id:42260 KB1 group clone ST-3K6
2.30.2.6.3.2372 OTU 3 seqs
prokMSA_id:13769 Thermoanaerobacter acetoethylicus str. HTB2/W ATCC 33265 . X
prokMSA_id:13770 Thermoanaerobacter acetoethylicus str. HTB2/W ATCC 33265 . L
prokMSA_id:13772 Thermoanaerobacter ethanolicus str. JW200 ATCC 31550
2.30.2.6.3.2463 OTU 1 seq
prokMSA_id:29733 Thermoanaerobacter sulfurigignens 
2.30.2.6.3.2486 OTU 2 seqs
prokMSA_id:13773 Clostridium sp. str. AZ3 B.1
prokMSA_id:13774 Thermoanaerobacter thermohydrosulfuricus str. E100-69 DSM 56
2.30.2.6.3.2559 OTU 1 seq
prokMSA_id:13768 Thermoanaerobacter sulfurophilus str. L-64 DSM 11584
2.30.2.6.3.2558 OTU 1 seq
prokMSA_id:13767 Thermoanaerobacter sp. str. AB11 Ad
2.30.2.6.4 TAB.THERMOCOPRIAE_SUBGROUP 17 seqs
2.30.2.6.4.2322 OTU 1 seq
prokMSA_id:28514 CHA3-125 clone CHA3-125
2.30.2.6.4.2346 OTU 1 seq
prokMSA_id:13786 clone VC2.1 Bac23
2.30.2.6.4.2364 OTU 1 seq
prokMSA_id:83837 Thermovibrio ammonificans strain HB-1 
2.30.2.6.4.2376 OTU 1 seq
prokMSA_id:13779 VC2.1 Bac48 complete 
2.30.2.6.4.2383 OTU 1 seq
prokMSA_id:13781 Thermoanaerobacter mathranii str. A3 DSM 11426
2.30.2.6.4.2389 OTU 1 seq
prokMSA_id:13787 VC2.1 Bac24 complete 
2.30.2.6.4.2442 OTU 6 seqs
prokMSA_id:13782 VC2.1 Bac2 complete 
prokMSA_id:13783 clone VC2.1 Bac3
prokMSA_id:13784 VC2.1 Bac5 complete 
prokMSA_id:13785 VC2.1 Bac13 complete 
prokMSA_id:13788 VC2.1 Bac34 complete 
prokMSA_id:85051 Desulfurobacterium crinifex strain NE 1206
2.30.2.6.4.2479 OTU 2 seqs
prokMSA_id:13778 Thermoanaerobacter thermocopriae str. JT-3 IAM 13577
prokMSA_id:13780 Thermoanaerobacter thermocopriae str. JT-3 IAM 13577
2.30.2.6.4.2510 OTU 2 seqs
prokMSA_id:26307 CHA3-27 clone CHA3-27 AJ132736
prokMSA_id:39086 CHA3-117 clone CHA3-117
2.30.2.6.4.2524 OTU 1 seq
prokMSA_id:49867 clone 33-PA42B99 
2.30.2.6.5 TAB.BROCKII_SUBGROUP 7 seqs
2.30.2.6.5.2311 OTU 1 seq
prokMSA_id:34305 O11E1 
2.30.2.6.5.2377 OTU 1 seq
prokMSA_id:39044 Carboxydobrachium pacificus 
2.30.2.6.5.2408 OTU 1 seq
prokMSA_id:13793 Thermoanaerobacter brockii subsp. lactiethylicus DSM 9801
2.30.2.6.5.2478 OTU 3 seqs
prokMSA_id:71328 O14E7 AF220322
prokMSA_id:85550 Thermoanaerobacter subterraneus strain SL9 
prokMSA_id:87991 Thermoanaerobacter sp. K67 AY280871
2.30.2.6.5.2505 OTU 1 seq
prokMSA_id:70136 O14C2 
2.30.3 SPOROMUSA_AND_RELATIVES 357 seqs
2.30.3.1 SPOROMUSA_GROUP 227 seqs
2.30.3.1.1 SLN.RUMINA_SUBGROUP 87 seqs
2.30.3.1.1.1012 OTU 1 seq
prokMSA_id:13813 clone RFP7
2.30.3.1.1.1042 OTU 1 seq
prokMSA_id:33404 rumen 4C0d-18 
2.30.3.1.1.1079 OTU 1 seq
prokMSA_id:29533 Propionispira arboris strain DSM 2179
2.30.3.1.1.147 OTU 2 seqs
prokMSA_id:36536 clone p-365-a3 
prokMSA_id:72926 clone p-73-a5 
2.30.3.1.1.191 OTU 1 seq
prokMSA_id:22425 Selenomonas sp. oral clone CS024 
2.30.3.1.1.250 OTU 4 seqs
prokMSA_id:24283 rumen 3C3d-5 AB034081
prokMSA_id:31775 rumen 3C3d-9 
prokMSA_id:46245 rumen 4C28d-3 AB034137
prokMSA_id:51519 rumen 3C3d-10 AB034079
2.30.3.1.1.304 OTU 4 seqs
prokMSA_id:13812 Selenomonas ruminantium subsp. lactilytica JCM 6582
prokMSA_id:13814 clone RFN3
prokMSA_id:29567 Selenomonas ruminantium isolate EAT2 
prokMSA_id:39424 Selenomonas ruminantium isolate EG19 
2.30.3.1.1.336 OTU 1 seq
prokMSA_id:31559 rumen 6C3d-34 
2.30.3.1.1.34 OTU 4 seqs
prokMSA_id:22408 rumen 3C28d-2 
prokMSA_id:27326 rumen 3C28d-7 
prokMSA_id:38382 rumen 3C28d-11 
prokMSA_id:41385 rumen 3C28d-9 
2.30.3.1.1.351 OTU 1 seq
prokMSA_id:41482 Mitsuokella jalaludinii strain M9 complete 
2.30.3.1.1.354 OTU 2 seqs
prokMSA_id:13817 Zymophilus paucivorans str. SH2 DSM 20756
prokMSA_id:36295 Zymophilus paucivorans AF373025
2.30.3.1.1.362 OTU 1 seq
prokMSA_id:31620 Selenomonas-like sp. oral strain FNA3 
2.30.3.1.1.377 OTU 1 seq
prokMSA_id:51787 Selenomonas sp. oral clone EW079 
2.30.3.1.1.46 OTU 1 seq
prokMSA_id:43296 rumen 6C3d-30 
2.30.3.1.1.464 OTU 1 seq
prokMSA_id:29056 Selenomonas sp. oral clone EW084 
2.30.3.1.1.489 OTU 3 seqs
prokMSA_id:13805 Anaerovibrio lipolytica DSM 3074. AJ010959
prokMSA_id:13815 clone RFN69
prokMSA_id:38984 Anaerovibrio lipolytica 
2.30.3.1.1.497 OTU 1 seq
prokMSA_id:74175 Selenomonas sp. oral clone CS002 
2.30.3.1.1.54 OTU 1 seq
prokMSA_id:70619 Selenomonas sp. oral clone AA024 
2.30.3.1.1.545 OTU 2 seqs
prokMSA_id:13801 Selenomonas ruminantium subsp. lactilytica DSM 2872
prokMSA_id:40982 Selenomonas ruminatium 
2.30.3.1.1.556 OTU 1 seq
prokMSA_id:85751 rumen clone BS17 
2.30.3.1.1.603 OTU 1 seq
prokMSA_id:37768 Megamonas hypermegale strain DSM 1672T
2.30.3.1.1.657 OTU 4 seqs
prokMSA_id:23591 Selenomonas-like sp. oral clone DM071 
prokMSA_id:42552 Selenomonas sp. oral clone EZ011 
prokMSA_id:43268 Selenomonas-like sp. oral strain GAA14 
prokMSA_id:87223 Selenomonas genomosp. C2 AY278628
2.30.3.1.1.685 OTU 2 seqs
prokMSA_id:13802 Selenomonas lacticifex str. VB4b DSM 20757
prokMSA_id:24490 Selenomonas lacticifex 
2.30.3.1.1.709 OTU 5 seqs
prokMSA_id:13800 Selenomonas ruminantium subsp. lactilytica str. HD4
prokMSA_id:13816 Selenomonas ruminantium str. S20
prokMSA_id:45161 Selenomonas ruminantium isolate ES3 
prokMSA_id:85930 rumen clone BF13 
prokMSA_id:86616 rumen clone BF32 
2.30.3.1.1.710 OTU 12 seqs
prokMSA_id:13806 Centipeda periodontii DSM 2778. AJ010963
prokMSA_id:16970 Selenomonas sp. oral clone AJ036 
prokMSA_id:28692 Selenomonas dianae AF287801
prokMSA_id:39572 Centipeda periodontii strain HB-2 AF458222
prokMSA_id:39975 Selenomonas sp. clone DS071 AF366274
prokMSA_id:42483 Selenomonas infelix 
prokMSA_id:59529 Selenomonas sp. oral clone P4PA_36 P2 
prokMSA_id:70073 Selenomonas sp. oral clone DY027 
prokMSA_id:72580 Selenomonas sp. oral clone EY047 
prokMSA_id:92034 Selenomonas sp. oral clone GI064 AY349404
prokMSA_id:92124 Selenomonas sp. oral clone IK004 AY349407
prokMSA_id:92541 Selenomonas sp. oral clone GT010 AY349405
2.30.3.1.1.714 OTU 1 seq
prokMSA_id:17375 rumen 4C28d-14 
2.30.3.1.1.78 OTU 1 seq
prokMSA_id:32169 rumen 4C3d-9 
2.30.3.1.1.794 OTU 1 seq
prokMSA_id:33071 Selenomonas sp. clone DS051 
2.30.3.1.1.80 OTU 4 seqs
prokMSA_id:36002 human oral A38 AF201987
prokMSA_id:40840 Selenomonas noxia 
prokMSA_id:71192 Selenomonas noxia-like sp. oral clone CI002 
prokMSA_id:72188 Selenomonas sp. oral clone EQ054 
2.30.3.1.1.821 OTU 1 seq
prokMSA_id:34987 clone p-2365-55G5 
2.30.3.1.1.835 OTU 1 seq
prokMSA_id:51109 rumen 2C28d-11 
2.30.3.1.1.85 OTU 1 seq
prokMSA_id:13799 Selenomonas ruminantium str. K2
2.30.3.1.1.855 OTU 1 seq
prokMSA_id:28118 Selenomonas flueggei-like sp. clone AH132 
2.30.3.1.1.865 OTU 7 seqs
prokMSA_id:13809 Selenomonas sputigena ATCC 35185
prokMSA_id:17310 Selenomonas sputingena 
prokMSA_id:22780 Selenomonas sp. oral clone EW051a 
prokMSA_id:31951 Selenomonas sputigena 
prokMSA_id:52640 Selenomonas sp. oral clone DD020 
prokMSA_id:72672 human oral A37 AF201986
prokMSA_id:73837 E1-K17 
2.30.3.1.1.882 OTU 1 seq
prokMSA_id:21823 clone p-2858-6C5 
2.30.3.1.1.944 OTU 2 seqs
prokMSA_id:45515 rumen 5C0d-24 
prokMSA_id:48795 rumen 4C28d-2 
2.30.3.1.1.949 OTU 1 seq
prokMSA_id:41729 clone p-4726-2Wb2 
2.30.3.1.1.959 OTU 1 seq
prokMSA_id:13803 Schwartzia succinivorans str. S1-1 DSM 10502
2.30.3.1.1.960 OTU 1 seq
prokMSA_id:13804 clone RF4
2.30.3.1.1.973 OTU 1 seq
prokMSA_id:13807 clone 30-20
2.30.3.1.1.975 OTU 1 seq
prokMSA_id:72198 mpn-isolate group 9 
2.30.3.1.1.986 OTU 1 seq
prokMSA_id:70887 Selenomonas sp. oral clone EW076 
2.30.3.1.1.999 OTU 2 seqs
prokMSA_id:21285 Selenomonas-like sp. oral clone CS015 
prokMSA_id:83279 Selenomonas sp. oral clone P2PA_80 P4 
2.30.3.1.2 VLN.PARVULA_SUBGROUP 65 seqs
2.30.3.1.2.1026 OTU 2 seqs
prokMSA_id:26894 Veillonella sp. ADV 281.99 
prokMSA_id:85594 Veillonella sp. 2001-112662 
2.30.3.1.2.126 OTU 1 seq
prokMSA_id:59563 Dialister sp. oral clone FY011 
2.30.3.1.2.131 OTU 1 seq
prokMSA_id:77363 A4 
2.30.3.1.2.150 OTU 1 seq
prokMSA_id:23368 Dialister sp. ADV 04.01 
2.30.3.1.2.181 OTU 1 seq
prokMSA_id:58262 Allisonella histaminiformans 
2.30.3.1.2.190 OTU 13 seqs
prokMSA_id:13829 Megasphaera elsdenii str. B159 ATCC 17752
prokMSA_id:20064 clone p-1934-s962-3 
prokMSA_id:20560 Megasphaera elsdenii ATCC 25940 
prokMSA_id:24370 Megasphaera elsdenii strain YJ-4 
prokMSA_id:25188 Megasphaera elsdenii strain JL1 
prokMSA_id:36860 Megasphaera elsdenii S2 
prokMSA_id:46322 rumen 3C3d-7 
prokMSA_id:50822 rumen 5C3d-9 
prokMSA_id:52166 rumen 3C3d-18 
prokMSA_id:53032 Megasphaera elsdenii S3 
prokMSA_id:71785 Megasphaera elsdenii strain T81 
prokMSA_id:74182 Megasphaera elsdenii strain La03 
prokMSA_id:81738 Megasphaera elsdenii strain 7-11 
2.30.3.1.2.392 OTU 1 seq
prokMSA_id:55383 Dialister sp. oral clone MCE7_134 E2 
2.30.3.1.2.409 OTU 1 seq
prokMSA_id:13828 Megasphaera cerevisiae str. VTT-E-85230
2.30.3.1.2.564 OTU 2 seqs
prokMSA_id:41128 Megasphaera sp. oral clone BS073 
prokMSA_id:42721 Megasphaera sp. oral clone CS025 AF287784
2.30.3.1.2.59 OTU 8 seqs
prokMSA_id:32378 rumen 2C28d-8 
prokMSA_id:32722 rumen 4C28d-7 
prokMSA_id:37391 clone p-1740-b3 
prokMSA_id:39342 rumen 4C28d-10 
prokMSA_id:48207 clone p-1941-s962-3 
prokMSA_id:52521 clone p-922-s962-5 
prokMSA_id:94802 clone Dpcom136 AY373330
prokMSA_id:95828 clone Dpcom123 AY371262
2.30.3.1.2.761 OTU 3 seqs
prokMSA_id:35000 Megasphaera sp. oral clone BB166 
prokMSA_id:43739 Anaerococcus geminatus 
prokMSA_id:68342 Megasphaera sp. oral clone MCE3_141 P1 
2.30.3.1.2.771 OTU 1 seq
prokMSA_id:13827 Dialister pneumosintes ATCC 33048
2.30.3.1.2.858 OTU 1 seq
prokMSA_id:28369 clone HuCB85
2.30.3.1.2.862 OTU 3 seqs
prokMSA_id:28862 Anaerosphaera nuciformis strain AIP 49.01 
prokMSA_id:38606 Anaerosphaera nuciformis strain AIP 412.00 AF473834
prokMSA_id:74093 Megasphaera sp. oral clone BU057 
2.30.3.1.2.863 OTU 9 seqs
prokMSA_id:13825 sp. str. SC -5
prokMSA_id:13826 sp. str. SC 3D
prokMSA_id:20613 human oral A41 AF201990
prokMSA_id:44531 human oral A40 AF201989
prokMSA_id:61048 clone cadhufec18a06sav AF530347
prokMSA_id:68355 Dialister sp. E2_20 E1 oral isolate 
prokMSA_id:70158 Dialister sp. oral strain GBA27 
prokMSA_id:72316 Dialister sp. oral clone BS095 
prokMSA_id:85145 Dialister invisus 
2.30.3.1.2.866 OTU 5 seqs
prokMSA_id:13823 Veillonella ratti ATCC 17746
prokMSA_id:13824 Veillonella criceti ATCC 17747
prokMSA_id:82021 Veillonella ratti strain ADV4313.2 AY211542
prokMSA_id:96523 Veillonella rodentium AY355139
prokMSA_id:97329 Veillonella ratti AY355138
2.30.3.1.2.940 OTU 12 seqs
prokMSA_id:13820 Veillonella dispar DSM 20735
prokMSA_id:13821 Veillonella parvula DSM 2008 . X84005
prokMSA_id:13822 Veillonella atypica DSM 20739
prokMSA_id:21762 Veillonella sp. oral clone AA050 
prokMSA_id:25275 Veillonella dispar 
prokMSA_id:30716 Veillonella parvula 
prokMSA_id:33416 Veillonella sp. oral clone X042 
prokMSA_id:35224 Veillonella atypica 
prokMSA_id:40553 Veillonella sp. clone BU083 
prokMSA_id:54075 clone p-5279-2Wa3 
prokMSA_id:55140 clone PIC29 
prokMSA_id:95347 Veillonella caviae AY355140
2.30.3.1.3 SPM.PAUCIVORANS_SUBGROUP 38 seqs
2.30.3.1.3.1036 OTU 1 seq
prokMSA_id:60600 clone G07 
2.30.3.1.3.1064 OTU 2 seqs
prokMSA_id:13847 Sporomusa DR1/8 str. DR1/8
prokMSA_id:21147 Sporomusa malonica strain DSM 5090 
2.30.3.1.3.275 OTU 1 seq
prokMSA_id:79562 clone AKS21 
2.30.3.1.3.38 OTU 1 seq
prokMSA_id:66919 clone SHA-109
2.30.3.1.3.428 OTU 2 seqs
prokMSA_id:66173 clone IIIA-10
prokMSA_id:66174 clone IIIA-1
2.30.3.1.3.449 OTU 1 seq
prokMSA_id:13839 Acetonema longum str. APO-1 DSM 6540
2.30.3.1.3.47 OTU 1 seq
prokMSA_id:16834 from anoxic bulk soil clone BSV90
2.30.3.1.3.474 OTU 1 seq
prokMSA_id:13840 clone SJA-29
2.30.3.1.3.476 OTU 1 seq
prokMSA_id:13841 clone SJA-84
2.30.3.1.3.477 OTU 1 seq
prokMSA_id:13843 clone SJA-143
2.30.3.1.3.498 OTU 1 seq
prokMSA_id:13849 clone P47
2.30.3.1.3.511 OTU 1 seq
prokMSA_id:25868 Sporomusa sphaeroides strain DSM 2875 
2.30.3.1.3.528 OTU 1 seq
prokMSA_id:82350 clone ZZ12C4 
2.30.3.1.3.529 OTU 3 seqs
prokMSA_id:13844 Sporomusa DR6 str. DR6. Y17760
prokMSA_id:13846 Sporomusa DR15 str. DR15. Y17762
prokMSA_id:36727 from anoxic bulk soil clone BSV16
2.30.3.1.3.534 OTU 2 seqs
prokMSA_id:66181 clone IIA-26
prokMSA_id:72034 clone IIIB-2
2.30.3.1.3.561 OTU 1 seq
prokMSA_id:20905 AA56 
2.30.3.1.3.579 OTU 5 seqs
prokMSA_id:13838 Anaerovibrio burkinabensis DSM 6283
prokMSA_id:13851 Anaeromusa acidaminophila DSM 3853. AF071415
prokMSA_id:33760 TCE33 
prokMSA_id:66172 clone IIIA-2 AJ488092
prokMSA_id:66184 clone IB-27
2.30.3.1.3.614 OTU 1 seq
prokMSA_id:72075 AA01 
2.30.3.1.3.623 OTU 2 seqs
prokMSA_id:13845 Sporomusa DR5 str. DR5. Y17761
prokMSA_id:23304 Sporomusa ovata strain DSM 2662 
2.30.3.1.3.71 OTU 1 seq
prokMSA_id:81047 clone KD2-97 
2.30.3.1.3.77 OTU 1 seq
prokMSA_id:27433 thermal soil clone YNPFFP9 
2.30.3.1.3.798 OTU 1 seq
prokMSA_id:13837 Anaerovibrio glycerini DSM 5192
2.30.3.1.3.825 OTU 1 seq
prokMSA_id:13850 str. SB90
2.30.3.1.3.856 OTU 1 seq
prokMSA_id:31050 Sporomusa acidovorans strain DSM 3132 
2.30.3.1.3.932 OTU 2 seqs
prokMSA_id:31092 Propionispora vibrioides isolate FKBS1
prokMSA_id:77768 Propionispora hippei clone 5
2.30.3.1.3.943 OTU 1 seq
prokMSA_id:26966 spore-forming 169 
2.30.3.1.3.992 OTU 1 seq
prokMSA_id:34224 from anoxic bulk soil clone BSV43
2.30.3.1.4 PHA.FAECIUM_SUBGROUP 37 seqs
2.30.3.1.4.161 OTU 3 seqs
prokMSA_id:13858 Phascolarctobacterium faecium ACM 3679
prokMSA_id:13859 Phascolarctobacterium faecium ACM 3681
prokMSA_id:13860 Phascolarctobacterium faecium ACM 3680
2.30.3.1.4.163 OTU 13 seqs
prokMSA_id:13856 clone RFN24
prokMSA_id:82841 rumen clone BS24 AY244975
prokMSA_id:83021 rumen clone BS18 AY244972
prokMSA_id:84160 rumen clone BF11 
prokMSA_id:84451 rumen clone BS10 
prokMSA_id:84795 rumen clone BS2 
prokMSA_id:85301 rumen clone BS20 
prokMSA_id:85413 rumen clone BF7 
prokMSA_id:85534 rumen clone BS8 
prokMSA_id:85652 rumen clone BF14 
prokMSA_id:85821 rumen clone BS15 
prokMSA_id:86208 rumen clone BF10 
prokMSA_id:86657 rumen clone BF9 
2.30.3.1.4.167 OTU 2 seqs
prokMSA_id:13852 Acidaminococcus fermentans str. VR4 DSM 20731
prokMSA_id:13853 Acidaminococcus fermentans str. AO
2.30.3.1.4.257 OTU 1 seq
prokMSA_id:20105 Acidaminococcus sp. ADV 255.99 
2.30.3.1.4.298 OTU 3 seqs
prokMSA_id:13862 Succinispira mobilis str. 19gly1. AJ006980
prokMSA_id:66171 clone IIIA-4
prokMSA_id:66179 clone IIA-29
2.30.3.1.4.302 OTU 1 seq
prokMSA_id:33044 clone p-2464-18B5 
2.30.3.1.4.466 OTU 1 seq
prokMSA_id:45688 clone p-286-a3 
2.30.3.1.4.599 OTU 1 seq
prokMSA_id:29289 mle1-9 
2.30.3.1.4.708 OTU 2 seqs
prokMSA_id:22697 rumen 4C28d-16 
prokMSA_id:28188 rumen 3C28d-10 
2.30.3.1.4.778 OTU 3 seqs
prokMSA_id:40064 ckncm198-F4M.1B9 
prokMSA_id:69824 adhufec395 AF132234
prokMSA_id:73552 clone cadhufec079h7 AF530309
2.30.3.1.4.810 OTU 3 seqs
prokMSA_id:26270 equine intestinal sp. PL25 clone PL25
prokMSA_id:29062 equine intestinal sp. CW09 clone CW09
prokMSA_id:35430 equine intestinal sp. CL27 clone CL27
2.30.3.1.4.873 OTU 1 seq
prokMSA_id:25947 clone p-3420-SwA2 
2.30.3.1.4.956 OTU 1 seq
prokMSA_id:13861 clone vadinHB04
2.30.3.1.4.981 OTU 2 seqs
prokMSA_id:32193 O16B1 
prokMSA_id:70334 O18G7 
2.30.3.2 HELIOBACTERIUM_GROUP 129 seqs
2.30.3.2.1 DFI.DEHALOGENANS_SUBGROUP 93 seqs
2.30.3.2.1.1010 OTU 1 seq
prokMSA_id:38434 Desulfosporosinus sp. ML7-SRB15 strain ML7-SRB15
2.30.3.2.1.1023 OTU 1 seq
prokMSA_id:13873 clone WCHB1-84
2.30.3.2.1.1030 OTU 1 seq
prokMSA_id:13879 clone SJA-118
2.30.3.2.1.107 OTU 1 seq
prokMSA_id:29453 clone p-2785-24E5 
2.30.3.2.1.1067 OTU 1 seq
prokMSA_id:13880 clone SJA-173
2.30.3.2.1.1074 OTU 1 seq
prokMSA_id:23528 Thermophilic JA2 
2.30.3.2.1.1083 OTU 1 seq
prokMSA_id:18032 Symbiobacterium sp. HN9 
2.30.3.2.1.1084 OTU 1 seq
prokMSA_id:42236 ckncm213-F4M.1G2 
2.30.3.2.1.128 OTU 1 seq
prokMSA_id:36687 soil clone S102 
2.30.3.2.1.132 OTU 3 seqs
prokMSA_id:77725 Clostridiaceae clone:Rs-J36
prokMSA_id:78152 Clostridiaceae clone:Rs-H17
prokMSA_id:78210 Clostridiaceae clone:Rs-K66
2.30.3.2.1.141 OTU 1 seq
prokMSA_id:19343 clone RB9C2 
2.30.3.2.1.177 OTU 1 seq
prokMSA_id:36188 Desulfosporosinus sp. PFB 
2.30.3.2.1.206 OTU 1 seq
prokMSA_id:78366 Clostridiaceae clone:Rs-P50
2.30.3.2.1.207 OTU 1 seq
prokMSA_id:40595 from anoxic bulk soil clone BSV24
2.30.3.2.1.212 OTU 1 seq
prokMSA_id:46485 Desulfitobacterium sp. Y51 
2.30.3.2.1.213 OTU 1 seq
prokMSA_id:56444 clone SHD-17
2.30.3.2.1.228 OTU 1 seq
prokMSA_id:13900 Desulfitobacterium sp. str. PCE1
2.30.3.2.1.242 OTU 15 seqs
prokMSA_id:13876 Desulfosporosinus T2 str. T2
prokMSA_id:13884 Desulfosporosinus 5apy str. 5apy
prokMSA_id:13886 Desulfosporosinus S6 str. S6. AF076245
prokMSA_id:13888 Desulfosporosinus S8 str. S8
prokMSA_id:13889 Desulfosporosinus S5 str. S5. AF076248
prokMSA_id:13890 Desulfosporosinus orientis DSM 8344
prokMSA_id:25249 Desulfosporosinus sp. P3 
prokMSA_id:59920 low G+C Gram-positive clone ccs270 
prokMSA_id:63748 Desulfosporosinus orientis strain DSMZ 7493
prokMSA_id:70866 Desulfosporosinus sp. LauIII isolate LauIII
prokMSA_id:72325 Desulfosporosinus sp. 44a-T3a 
prokMSA_id:81121 clone ZZ9C1 
prokMSA_id:81460 clone ZZ14C3 
prokMSA_id:95633 Desulfosporosinus idahoense strain A10 AJ582756
prokMSA_id:96132 Desulfosporosinus limneticum strain STP12 AJ582757
2.30.3.2.1.244 OTU 1 seq
prokMSA_id:63100 clone MB-C2-152 
2.30.3.2.1.252 OTU 3 seqs
prokMSA_id:77865 Clostridiaceae clone:Rs-A28
prokMSA_id:77906 Clostridiaceae clone:Rs-D61
prokMSA_id:78141 Clostridiaceae clone:Rs-D04
2.30.3.2.1.263 OTU 1 seq
prokMSA_id:13882 str. Boom-3m-02
2.30.3.2.1.264 OTU 1 seq
prokMSA_id:13883 Desulfosporosinus Blif str. Blif
2.30.3.2.1.270 OTU 4 seqs
prokMSA_id:26455 rape rhizosphere wr0198 AJ295559
prokMSA_id:63113 clone MB-B2-105 
prokMSA_id:89473 HOClCi9 AY328558
prokMSA_id:98258 clone D5 AY375144
2.30.3.2.1.300 OTU 1 seq
prokMSA_id:81849 clone ZZ12C8 
2.30.3.2.1.301 OTU 1 seq
prokMSA_id:46259 equine intestinal sp. CL16 clone CL16
2.30.3.2.1.31 OTU 10 seqs
prokMSA_id:13896 clone SJA-19
prokMSA_id:13897 clone SJA-47
prokMSA_id:13898 Dehalobacter restrictus str. PER-K23
prokMSA_id:13899 Dehalobacter restrictus str. TEA
prokMSA_id:22205 clone d025 
prokMSA_id:29474 clone d154 
prokMSA_id:65484 Dehalobacter sp. SHD-11 
prokMSA_id:66193 clone IA-18
prokMSA_id:69301 Dehalobacter sp. TCA1 
prokMSA_id:72453 SHA-67 
2.30.3.2.1.32 OTU 1 seq
prokMSA_id:74312 clone P3IB-3 
2.30.3.2.1.337 OTU 1 seq
prokMSA_id:26918 clone d011 
2.30.3.2.1.36 OTU 3 seqs
prokMSA_id:13877 Desulfosporosinus S10 str. S10
prokMSA_id:13885 Desulfosporosinus S7 str. S7. AF076244
prokMSA_id:63750 Desulfotomaculum auripigmentum strain DSMZ 13351
2.30.3.2.1.39 OTU 1 seq
prokMSA_id:63299 clone RCP2-71 
2.30.3.2.1.454 OTU 1 seq
prokMSA_id:29646 rumen 3C0d-20 
2.30.3.2.1.460 OTU 1 seq
prokMSA_id:13893 Peptococcus niger
2.30.3.2.1.463 OTU 1 seq
prokMSA_id:13894 Syntrophobotulus glycolicus str. FlGlyR
2.30.3.2.1.471 OTU 1 seq
prokMSA_id:46527 mle1-12 
2.30.3.2.1.49 OTU 3 seqs
prokMSA_id:33994 clone GOUTB3 
prokMSA_id:50913 clone GOUTA9 
prokMSA_id:51930 low G+C Gram-positive clone 36-28 
2.30.3.2.1.562 OTU 2 seqs
prokMSA_id:42091 Peptococcus-like sp. oral clone I070 
prokMSA_id:68340 Peptococcus sp. oral clone MCE10_265 E1 
2.30.3.2.1.602 OTU 1 seq
prokMSA_id:61053 clone cadhufec17f05sav 
2.30.3.2.1.649 OTU 1 seq
prokMSA_id:23926 clone:BCf10-04
2.30.3.2.1.669 OTU 1 seq
prokMSA_id:28888 Desulfitobacterium metallireducens 
2.30.3.2.1.749 OTU 1 seq
prokMSA_id:46816 clone Car112fc 
2.30.3.2.1.795 OTU 1 seq
prokMSA_id:50658 Desulfitobacterium sp. Viet-1 
2.30.3.2.1.800 OTU 1 seq
prokMSA_id:70151 E1-K16 
2.30.3.2.1.816 OTU 5 seqs
prokMSA_id:13863 Desulfitobacterium frappieri str. PCP-1
prokMSA_id:13867 Desulfitobacterium sp
prokMSA_id:13902 Desulfitobacterium sp. str. TCE1
prokMSA_id:45375 Desulfitobacterium frappieri strain DP7
prokMSA_id:72154 Desulfitobacterium frappieri strain G2 
2.30.3.2.1.832 OTU 2 seqs
prokMSA_id:13865 Desulfitobacterium chlororespirans str. Co23
prokMSA_id:13901 Desulfitobacterium hafniense str. DCB-2
2.30.3.2.1.845 OTU 1 seq
prokMSA_id:17148 species isolate Boom-3m-05
2.30.3.2.1.853 OTU 1 seq
prokMSA_id:26036 clone P3IB-51 
2.30.3.2.1.898 OTU 1 seq
prokMSA_id:13870 Desulfosporosinus orientis str. Singapore I DSM 765
2.30.3.2.1.909 OTU 1 seq
prokMSA_id:13872 clone WCHB1-77
2.30.3.2.1.926 OTU 2 seqs
prokMSA_id:82915 clone:ALU12
prokMSA_id:86338 clone:AHU17
2.30.3.2.1.96 OTU 1 seq
prokMSA_id:71962 clone GIF4 
2.30.3.2.1.972 OTU 1 seq
prokMSA_id:13866 clone RFN65
2.30.3.2.1.976 OTU 1 seq
prokMSA_id:20587 Desulfosporosinus sp. P1 
2.30.3.2.2 DFM.RUMINIS_SUBGROUP 17 seqs
2.30.3.2.2.10 OTU 2 seqs
prokMSA_id:27610 clone clB02 
prokMSA_id:29529 clone clI20 
2.30.3.2.2.185 OTU 2 seqs
prokMSA_id:20582 Desulfotomaculum sp. DEM-KMe98-6 
prokMSA_id:35107 Desulfotomaculum sp. DEM-KMe98-10 
2.30.3.2.2.198 OTU 2 seqs
prokMSA_id:60009 Pelotomaculum sp. JT 
prokMSA_id:60014 clone:JI
2.30.3.2.2.233 OTU 1 seq
prokMSA_id:13904 Desulfotomaculum ruminis str. DL DSM 2154
2.30.3.2.2.245 OTU 1 seq
prokMSA_id:13906 unnamed organism
2.30.3.2.2.279 OTU 2 seqs
prokMSA_id:13905 clone WCHB1-20
prokMSA_id:66938 clone SHA-86
2.30.3.2.2.290 OTU 1 seq
prokMSA_id:41028 low G+C Gram-positive clone 36-20 
2.30.3.2.2.310 OTU 1 seq
prokMSA_id:13911 Desulfotomaculum nigrificans
2.30.3.2.2.313 OTU 1 seq
prokMSA_id:13912 Desulfotomaculum sp. DSM 7440
2.30.3.2.2.332 OTU 1 seq
prokMSA_id:13914 Desulfotomaculum reducens str. MI-1
2.30.3.2.2.339 OTU 1 seq
prokMSA_id:13918 Desulfotomaculum putei SMCC W463
2.30.3.2.2.522 OTU 1 seq
prokMSA_id:60013 clone:UT-1
2.30.3.2.2.894 OTU 1 seq
prokMSA_id:47304 low G+C Gram-positive clone 36-22 
2.30.3.2.3 HEL.CHLORUM_SUBGROUP 19 seqs
2.30.3.2.3.318 OTU 1 seq
prokMSA_id:73860 Heliobacterium sulfidophilum complete 
2.30.3.2.3.380 OTU 1 seq
prokMSA_id:13923 Heliobacterium chlorum ATCC 35205
2.30.3.2.3.383 OTU 1 seq
prokMSA_id:13924 Heliorestis daurensis str. BT-H1
2.30.3.2.3.61 OTU 16 seqs
prokMSA_id:28304 Symbiobacterium sp. YK88 AB052369
prokMSA_id:29246 Symbiobacterium sp. MN128 AB052380
prokMSA_id:29828 Symbiobacterium sp. MO16 AB052371
prokMSA_id:31811 Symbiobacterium sp. MO87 AB052368
prokMSA_id:32767 Symbiobacterium sp. MO32 AB052379
prokMSA_id:33425 Symbiobacterium sp. HN15 AB052378
prokMSA_id:35473 Symbiobacterium sp. MO31 AB052381
prokMSA_id:38028 Symbiobacterium sp. MN5 
prokMSA_id:42424 Symbiobacterium sp. MN117 AB052385
prokMSA_id:42519 Symbiobacterium sp. MO33 AB052373
prokMSA_id:46046 Symbiobacterium sp. MO22 AB052375
prokMSA_id:47548 Symbiobacterium sp. MO17 AB052374
prokMSA_id:48078 Symbiobacterium sp. YK63 AB052370
prokMSA_id:48690 Symbiobacterium sp. YK66 AB052377
prokMSA_id:51749 Symbiobacterium sp. YK1 AB052372
prokMSA_id:54890 Symbiobacterium thermophilum 
2.30.3.3 CLOSTRIDIUM_STRAIN_DMC 1 seq
2.30.3.3.397 OTU 1 seq
prokMSA_id:13929 Clostridium sp. str. DMC
2.30.4 EUBACTERIUM_AND_RELATIVES 822 seqs
2.30.4.1 C.COCCOIDES_GROUP 584 seqs
2.30.4.1.1 C.XYLANOLYTICUM_SUBGROUP 132 seqs
2.30.4.1.1.2661 OTU 1 seq
prokMSA_id:13976 clone RFN27
2.30.4.1.1.2660 OTU 1 seq
prokMSA_id:13974 clone RC39
2.30.4.1.1.2692 OTU 1 seq
prokMSA_id:13981 clone JW25
2.30.4.1.1.2696 OTU 1 seq
prokMSA_id:83271 clone ABLCf11 
2.30.4.1.1.2698 OTU 1 seq
prokMSA_id:77867 clone:Rs-B88
2.30.4.1.1.2711 OTU 1 seq
prokMSA_id:13984 clone 12-128
2.30.4.1.1.2731 OTU 1 seq
prokMSA_id:35993 equine intestinal sp. CL25 clone CL25
2.30.4.1.1.2732 OTU 4 seqs
prokMSA_id:20244 Butyrate-producing A2-175 
prokMSA_id:28767 clone p-373-a3 
prokMSA_id:33837 clone p-59-a5 
prokMSA_id:54048 clone p-1676-b3 
2.30.4.1.1.2746 OTU 1 seq
prokMSA_id:33545 equine intestinal sp. DW11 clone DW11
2.30.4.1.1.2747 OTU 2 seqs
prokMSA_id:34649 clone p-3075-SwA5 
prokMSA_id:47954 adhufec405 
2.30.4.1.1.2770 OTU 2 seqs
prokMSA_id:38358 rumen 3C28d-6 
prokMSA_id:45716 rumen 4C28d-22 
2.30.4.1.1.2779 OTU 2 seqs
prokMSA_id:21714 equine intestinal sp. MW05 clone MW05
prokMSA_id:38154 equine intestinal sp. DL04 clone DL04
2.30.4.1.1.2787 OTU 2 seqs
prokMSA_id:13936 clone RC7
prokMSA_id:26280 Rumen RC7r-54 
2.30.4.1.1.2804 OTU 1 seq
prokMSA_id:13971 Clostridium sp. str. DR7
2.30.4.1.1.2806 OTU 1 seq
prokMSA_id:36330 clone p-195-o5 
2.30.4.1.1.2808 OTU 4 seqs
prokMSA_id:13979 Clostridium clostridiiforme ATCC 25537
prokMSA_id:13985 Clostridium sp. str. DR6A
prokMSA_id:13986 Clostridium sp. str. Lip1 DSM 10643
prokMSA_id:83226 Clostridium boltei strain 16351
2.30.4.1.1.2812 OTU 1 seq
prokMSA_id:28175 clone:BCf1-20
2.30.4.1.1.2817 OTU 1 seq
prokMSA_id:20690 fiber-attaching rumen clone:SY19
2.30.4.1.1.2821 OTU 1 seq
prokMSA_id:43700 clone:BCf1-16
2.30.4.1.1.2839 OTU 1 seq
prokMSA_id:51880 clone L10-4
2.30.4.1.1.2835 OTU 1 seq
prokMSA_id:48871 equine intestinal sp. CW14 clone CW14
2.30.4.1.1.2842 OTU 1 seq
prokMSA_id:25210 clone p-2489-18B5 
2.30.4.1.1.2849 OTU 6 seqs
prokMSA_id:13934 Butyrivibrio fibrisolvens str. H17cSA
prokMSA_id:13949 Butyrivibrio fibrisolvens NCDO 2435
prokMSA_id:13952 Butyrivibrio fibrisolvens str. OB251
prokMSA_id:48290 Butyrivibrio fibrisolvens strain OB247 
prokMSA_id:48412 Butyrivibrio fibrisolvens strain OB237 
prokMSA_id:74571 Butyrivibrio fibrisolvens strain OB249 
2.30.4.1.1.2854 OTU 1 seq
prokMSA_id:19529 isolate HuCC34
2.30.4.1.1.2858 OTU 1 seq
prokMSA_id:20799 clone p-2529-18B5 
2.30.4.1.1.2862 OTU 1 seq
prokMSA_id:13939 clone RCP17
2.30.4.1.1.2860 OTU 1 seq
prokMSA_id:46138 equine intestinal sp. DW20 clone DW20
2.30.4.1.1.2865 OTU 1 seq
prokMSA_id:53640 clone p-2592-9F5 
2.30.4.1.1.2871 OTU 1 seq
prokMSA_id:21065 equine intestinal sp. ML12 clone ML12
2.30.4.1.1.2874 OTU 1 seq
prokMSA_id:50166 clone p-389-o3 
2.30.4.1.1.2878 OTU 1 seq
prokMSA_id:13940 clone RFP4
2.30.4.1.1.2879 OTU 1 seq
prokMSA_id:13941 clone JW5
2.30.4.1.1.2881 OTU 1 seq
prokMSA_id:13942 clone JW28
2.30.4.1.1.2886 OTU 1 seq
prokMSA_id:13943 clone 30-2
2.30.4.1.1.2884 OTU 1 seq
prokMSA_id:37723 rumen 3C3d-17 
2.30.4.1.1.2888 OTU 1 seq
prokMSA_id:13945 Butyrivibrio fibrisolvens NCDO 2222
2.30.4.1.1.2891 OTU 1 seq
prokMSA_id:49916 clone p-4459-6Wb3 
2.30.4.1.1.2890 OTU 1 seq
prokMSA_id:13947 Butyrivibrio fibrisolvens NCDO 2432
2.30.4.1.1.2911 OTU 1 seq
prokMSA_id:22771 clone p-214-o5 
2.30.4.1.1.2929 OTU 1 seq
prokMSA_id:85225 clone ABLCf20 
2.30.4.1.1.2961 OTU 1 seq
prokMSA_id:77702 clone:Rs-F92
2.30.4.1.1.2966 OTU 3 seqs
prokMSA_id:20886 equine intestinal sp. CL04 clone CL04 AJ408039
prokMSA_id:23089 equine intestinal sp. CW08 clone CW08 AJ408078
prokMSA_id:29915 equine intestinal sp. DW06 clone DW06
2.30.4.1.1.2976 OTU 1 seq
prokMSA_id:13933 Clostridium proteoclasticum str. B316 ATCC 51982
2.30.4.1.1.2995 OTU 1 seq
prokMSA_id:50499 clone p-4162-6Wa5 
2.30.4.1.1.2998 OTU 1 seq
prokMSA_id:17500 equine intestinal sp. PL07 clone PL07
2.30.4.1.1.3027 OTU 2 seqs
prokMSA_id:13965 Clostridium aerotolerans DSM 5434
prokMSA_id:13973 Clostridium xylanolyticum ATCC 49623
2.30.4.1.1.3030 OTU 2 seqs
prokMSA_id:79158 clone GG13 
prokMSA_id:79513 clone GG15 
2.30.4.1.1.3032 OTU 3 seqs
prokMSA_id:24781 clone HuCB40
prokMSA_id:33850 adhufec406 
prokMSA_id:49141 clone p-355-a3 
2.30.4.1.1.3037 OTU 1 seq
prokMSA_id:30277 equine intestinal sp. ML16 clone ML16
2.30.4.1.1.3043 OTU 1 seq
prokMSA_id:45129 ckncm174-F3M.1E3 
2.30.4.1.1.3042 OTU 1 seq
prokMSA_id:68844 clone p-2876-6C5 
2.30.4.1.1.3058 OTU 1 seq
prokMSA_id:29965 Clostridium proteoclasticum strain UC 142
2.30.4.1.1.3056 OTU 1 seq
prokMSA_id:49346 equine intestinal sp. DL03 clone DL03
2.30.4.1.1.3063 OTU 1 seq
prokMSA_id:52289 Clostridium algidixylanolyticum 
2.30.4.1.1.3066 OTU 12 seqs
prokMSA_id:13958 Desulfotomaculum guttoideum str. 50 DSM 4024
prokMSA_id:13961 Clostridium sp. str. DR6B
prokMSA_id:13962 Clostridium sp. str. LIP5. Y12289
prokMSA_id:13963 Clostridium methoxybenzovorans str. SR3 DSM 12182
prokMSA_id:17743 Clostridium celerecrescens clone IrT-JG1-12
prokMSA_id:26602 Clostridium indolis strain DSM 755
prokMSA_id:39305 ZF1 
prokMSA_id:52311 Clostridium saccharolyticum strain DSM 2544
prokMSA_id:70424 Clostridium sphenoides 
prokMSA_id:85342 Clostridium sp. CITR8 
prokMSA_id:85783 Clostridium sp. TDO 
prokMSA_id:88374 Clostridium sp. ArC5 AF443594
2.30.4.1.1.3064 OTU 1 seq
prokMSA_id:32108 equine intestinal sp. CL12 clone CL12
2.30.4.1.1.3079 OTU 1 seq
prokMSA_id:29237 equine intestinal sp. DL18 clone DL18
2.30.4.1.1.3087 OTU 8 seqs
prokMSA_id:13935 clone RC3
prokMSA_id:13937 clone RC22
prokMSA_id:13938 clone RCP5
prokMSA_id:13944 clone RFN13
prokMSA_id:13946 Butyrivibrio fibrisolvens NCDO 2398
prokMSA_id:13950 Butyrivibrio fibrisolvens str. Bu 43
prokMSA_id:41384 Butyrivibrio hungatei strain JK 615
prokMSA_id:98638 Butyrivibrio hungatei strain Su6 AY178635
2.30.4.1.1.3088 OTU 2 seqs
prokMSA_id:13957 Clostridium sphenoides ATCC 19403
prokMSA_id:72750 Clostridium sp. HAAP-2 
2.30.4.1.1.3100 OTU 1 seq
prokMSA_id:37999 equine intestinal sp. PL05 clone PL05
2.30.4.1.1.3102 OTU 1 seq
prokMSA_id:18619 clone p-662-a5 
2.30.4.1.1.3111 OTU 2 seqs
prokMSA_id:21995 rumen 5C3d-13 
prokMSA_id:27777 rumen 6C3d-11 
2.30.4.1.1.3132 OTU 1 seq
prokMSA_id:41158 rumen 3C3d-19 
2.30.4.1.1.3137 OTU 1 seq
prokMSA_id:13955 clone adhufec13.25
2.30.4.1.1.3136 OTU 1 seq
prokMSA_id:13951 TW2 str. TW2
2.30.4.1.1.3138 OTU 1 seq
prokMSA_id:24175 clone p-5263-4Wb5 
2.30.4.1.1.3142 OTU 1 seq
prokMSA_id:28123 CCAJG151 
2.30.4.1.1.3148 OTU 1 seq
prokMSA_id:42492 clone p-228-o5 
2.30.4.1.1.3154 OTU 1 seq
prokMSA_id:52933 Firmicutes sp. oral clone CK030 
2.30.4.1.1.3152 OTU 1 seq
prokMSA_id:49856 sp. oral clone DO016 
2.30.4.1.1.3160 OTU 1 seq
prokMSA_id:23380 rumen 3C0d-9 
2.30.4.1.1.3168 OTU 1 seq
prokMSA_id:69988 clone p-386-o3 
2.30.4.1.1.3167 OTU 3 seqs
prokMSA_id:13982 clone 12-74
prokMSA_id:36565 rumen 3C0d-1 
prokMSA_id:52499 rumen 5C0d-19 AB034049
2.30.4.1.1.3174 OTU 1 seq
prokMSA_id:28618 Firmicutes sp. oral clone BB124 
2.30.4.1.1.3191 OTU 1 seq
prokMSA_id:19729 rumen 4C0d-5 
2.30.4.1.1.3195 OTU 1 seq
prokMSA_id:13960 clone RFN18
2.30.4.1.1.3199 OTU 1 seq
prokMSA_id:43789 Coprococcus catus 
2.30.4.1.1.3209 OTU 1 seq
prokMSA_id:24389 fiber-attaching rumen clone:SY16
2.30.4.1.1.3213 OTU 1 seq
prokMSA_id:13967 clone RC28
2.30.4.1.1.3211 OTU 1 seq
prokMSA_id:13966 clone RC20
2.30.4.1.1.3221 OTU 1 seq
prokMSA_id:13968 clone RCP10
2.30.4.1.1.3223 OTU 1 seq
prokMSA_id:44923 clone p-619-a5 
2.30.4.1.1.3236 OTU 2 seqs
prokMSA_id:55615 Lachnospiraceae oral clone MCE10_236 E5 
prokMSA_id:70198 Firmicutes sp. oral strain FTB41 
2.30.4.1.1.3239 OTU 4 seqs
prokMSA_id:13930 Butyrivibrio fibrisolvens str. D1
prokMSA_id:13931 Butyrivibrio fibrisolvens NCDO 2221
prokMSA_id:37898 Butyrivibrio fibrisolvens strain C211 
prokMSA_id:46567 Butyrivibrio fibrisolvens strain WV1 
2.30.4.1.1.3243 OTU 1 seq
prokMSA_id:13970 clone RFN81
2.30.4.1.2 RUC.HANSENII_SUBGROUP 81 seqs
2.30.4.1.2.2667 OTU 1 seq
prokMSA_id:27207 ckncm148-F1M.2F9 
2.30.4.1.2.2688 OTU 1 seq
prokMSA_id:30215 equine intestinal sp. ML37 clone ML37
2.30.4.1.2.2702 OTU 1 seq
prokMSA_id:25469 adhufec40 
2.30.4.1.2.2730 OTU 1 seq
prokMSA_id:35055 equine intestinal sp. PW07 clone PW07
2.30.4.1.2.2733 OTU 1 seq
prokMSA_id:77371 A29 
2.30.4.1.2.2749 OTU 1 seq
prokMSA_id:50625 equine intestinal sp. PL31 clone PL31
2.30.4.1.2.2748 OTU 1 seq
prokMSA_id:35314 equine intestinal sp. DL33 clone DL33
2.30.4.1.2.2754 OTU 1 seq
prokMSA_id:77466 A22 
2.30.4.1.2.2769 OTU 4 seqs
prokMSA_id:36592 equine intestinal sp. PW04 clone PW04 AJ408250
prokMSA_id:37099 equine intestinal sp. MW11 clone MW11 AJ408198
prokMSA_id:40098 equine intestinal sp. PL37 clone PL37
prokMSA_id:52617 equine intestinal sp. CW03 clone CW03
2.30.4.1.2.2784 OTU 2 seqs
prokMSA_id:18687 clone p-2000-s959-5 
prokMSA_id:43588 clone HuCB12
2.30.4.1.2.2798 OTU 2 seqs
prokMSA_id:13995 Ruminococcus schinkii str. B DSM 10518
prokMSA_id:13996 Ruminococcus sp. str. Bie 41
2.30.4.1.2.2803 OTU 1 seq
prokMSA_id:54116 clone p-2432-55G5 
2.30.4.1.2.2802 OTU 1 seq
prokMSA_id:71965 clone p-2624-9F5 
2.30.4.1.2.2831 OTU 1 seq
prokMSA_id:71830 A20 complete 
2.30.4.1.2.2840 OTU 1 seq
prokMSA_id:39770 clone L7-6
2.30.4.1.2.2845 OTU 1 seq
prokMSA_id:36647 clone p-247-o5 
2.30.4.1.2.2853 OTU 1 seq
prokMSA_id:28275 equine intestinal sp. CL15 clone CL15
2.30.4.1.2.2867 OTU 1 seq
prokMSA_id:39208 equine intestinal clone:YT15
2.30.4.1.2.2873 OTU 1 seq
prokMSA_id:30968 rumen 6C3d-13 
2.30.4.1.2.2872 OTU 1 seq
prokMSA_id:30895 GA36 
2.30.4.1.2.2877 OTU 1 seq
prokMSA_id:13988 cellulosolvens ATCC 43171
2.30.4.1.2.2883 OTU 1 seq
prokMSA_id:28901 rumen 4C3d-8 
2.30.4.1.2.2889 OTU 1 seq
prokMSA_id:49915 equine intestinal sp. ML13 clone ML13
2.30.4.1.2.2893 OTU 12 seqs
prokMSA_id:13989 Ruminococcus obeum
prokMSA_id:13993 Ruminococcus obeum ATCC 29174
prokMSA_id:38418 clone p-60-a5 
prokMSA_id:40507 clone p-1977-s962-5 
prokMSA_id:58011 clone:C-86
prokMSA_id:61089 clone cadhufec028h7 AF530301
prokMSA_id:73388 mpn-isolate group 19 
prokMSA_id:81645 Ruminococcus obeum clone 1-4 
prokMSA_id:92205 clone DONOR_30 AY343314
prokMSA_id:92538 clone DONOR_31 AY343315
prokMSA_id:92961 clone DONOR_81 AY343250
prokMSA_id:97679 Clostridium sp. cTPY-17 complete AY239462
2.30.4.1.2.2901 OTU 1 seq
prokMSA_id:72420 adhufec52 
2.30.4.1.2.2899 OTU 1 seq
prokMSA_id:18024 equine intestinal sp. MW04 clone MW04
2.30.4.1.2.2907 OTU 1 seq
prokMSA_id:31735 clone p-192-o5 
2.30.4.1.2.2906 OTU 1 seq
prokMSA_id:13998 clone RC25
2.30.4.1.2.2903 OTU 1 seq
prokMSA_id:13992 clone adhufec35.25
2.30.4.1.2.2905 OTU 1 seq
prokMSA_id:13997 Ruminococcus hydrogenotrophicus str. S5a33 DSM 10507
2.30.4.1.2.2908 OTU 1 seq
prokMSA_id:13999 clone RC34
2.30.4.1.2.2910 OTU 1 seq
prokMSA_id:18897 ckncm164-F3M.1B7 
2.30.4.1.2.2920 OTU 1 seq
prokMSA_id:48088 clone p-3663-18B3 
2.30.4.1.2.2918 OTU 1 seq
prokMSA_id:52106 Firmicutes sp. oral clone CH017 
2.30.4.1.2.2928 OTU 1 seq
prokMSA_id:77537 A17 
2.30.4.1.2.2937 OTU 1 seq
prokMSA_id:52321 clone p-2482-18B5 
2.30.4.1.2.2949 OTU 1 seq
prokMSA_id:16475 clone HuCB25
2.30.4.1.2.2955 OTU 1 seq
prokMSA_id:71824 human infant L127dB 
2.30.4.1.2.2959 OTU 1 seq
prokMSA_id:52043 rumen 3C28d-5 
2.30.4.1.2.2957 OTU 1 seq
prokMSA_id:22899 Ruminococcus sp. bln9 
2.30.4.1.2.2987 OTU 1 seq
prokMSA_id:77785 clone:Rs-H32
2.30.4.1.2.3045 OTU 1 seq
prokMSA_id:28218 clone HuCA5
2.30.4.1.2.3047 OTU 1 seq
prokMSA_id:33906 clone HuCA26
2.30.4.1.2.3065 OTU 2 seqs
prokMSA_id:25317 Syntrophococcus sucromutans strain DSM 3224 Y18191
prokMSA_id:41867 Syntrophococcus sucromutans 
2.30.4.1.2.3082 OTU 1 seq
prokMSA_id:73902 ckncm241-c5d5 
2.30.4.1.2.3086 OTU 1 seq
prokMSA_id:51634 clone p-2746-24E5 
2.30.4.1.2.3085 OTU 1 seq
prokMSA_id:69958 clone HuCA19
2.30.4.1.2.3089 OTU 5 seqs
prokMSA_id:35844 mpn-isolate group 18 
prokMSA_id:40035 adhufec171 
prokMSA_id:40308 clone HuCA2
prokMSA_id:81152 Ruminococcus obeum clone 1-56 
prokMSA_id:81272 Ruminococcus obeum clone 1-33 
2.30.4.1.2.3099 OTU 1 seq
prokMSA_id:26513 equine intestinal sp. CL23 clone CL23
2.30.4.1.2.3114 OTU 3 seqs
prokMSA_id:14000 Ruminococcus productus ATCC 27340
prokMSA_id:14001 Clostridium sp. str. formate
prokMSA_id:14007 Ruminococcus productus ATCC 27340
2.30.4.1.2.3141 OTU 1 seq
prokMSA_id:36624 clone p-188-o5 
2.30.4.1.2.3146 OTU 1 seq
prokMSA_id:29867 clone HuCA22
2.30.4.1.2.3143 OTU 1 seq
prokMSA_id:29937 rumen 4C28d-24 
2.30.4.1.2.3157 OTU 1 seq
prokMSA_id:35015 equine intestinal sp. PL26 clone PL26
2.30.4.1.2.3188 OTU 1 seq
prokMSA_id:22923 clone p-2465-18B5 
2.30.4.1.2.3190 OTU 1 seq
prokMSA_id:40639 clone p-2399-55G5 
2.30.4.1.2.3207 OTU 1 seq
prokMSA_id:50752 equine intestinal sp. DL26 clone DL26
2.30.4.1.2.3224 OTU 1 seq
prokMSA_id:42647 equine intestinal sp. ML01 clone ML01
2.30.4.1.3 EUB.SABURREUM_SUBGROUP 8 seqs
2.30.4.1.3.2745 OTU 1 seq
prokMSA_id:71649 sp. oral clone BS091 
2.30.4.1.3.2837 OTU 1 seq
prokMSA_id:22599 sp. oral clone BR088 
2.30.4.1.3.2861 OTU 1 seq
prokMSA_id:21881 clone p-1616-c5 
2.30.4.1.3.2887 OTU 1 seq
prokMSA_id:29564 adhufec363 
2.30.4.1.3.2971 OTU 1 seq
prokMSA_id:14010 Johnsonella ignava ATCC 51276
2.30.4.1.3.3036 OTU 1 seq
prokMSA_id:77653 clone:Rs-F27
2.30.4.1.3.3117 OTU 1 seq
prokMSA_id:71165 sp. oral clone BU061 
2.30.4.1.3.3128 OTU 1 seq
prokMSA_id:45298 equine intestinal sp. ML18 clone ML18
2.30.4.1.4 RUC.GNAVUS_SUBGROUP 142 seqs
2.30.4.1.4.2668 OTU 1 seq
prokMSA_id:77853 clone:Rs-G40
2.30.4.1.4.2666 OTU 1 seq
prokMSA_id:19426 equine intestinal sp. ML36 clone ML36
2.30.4.1.4.2673 OTU 1 seq
prokMSA_id:71397 Firmicutes sp. oral clone AO068 
2.30.4.1.4.2670 OTU 1 seq
prokMSA_id:25534 clone p-2035-s959-5 
2.30.4.1.4.2674 OTU 1 seq
prokMSA_id:38374 adhufec382 
2.30.4.1.4.2677 OTU 1 seq
prokMSA_id:38812 clone L10-8
2.30.4.1.4.2678 OTU 1 seq
prokMSA_id:71692 mpn-isolate group 22 
2.30.4.1.4.2675 OTU 1 seq
prokMSA_id:19932 CCAJG116 
2.30.4.1.4.2680 OTU 1 seq
prokMSA_id:28819 equine intestinal sp. CL29 clone CL29
2.30.4.1.4.2703 OTU 1 seq
prokMSA_id:16575 equine intestinal sp. DL05 clone DL05
2.30.4.1.4.2706 OTU 1 seq
prokMSA_id:14036 Clostridium nexile DSM 1787
2.30.4.1.4.2713 OTU 1 seq
prokMSA_id:46733 equine intestinal sp. DW03 clone DW03
2.30.4.1.4.2720 OTU 1 seq
prokMSA_id:27071 clone p-3568-9F3 
2.30.4.1.4.2724 OTU 2 seqs
prokMSA_id:22721 clone p-265-o5 
prokMSA_id:47477 clone p-217-o5 
2.30.4.1.4.2726 OTU 1 seq
prokMSA_id:27488 clone p-1561-b5 
2.30.4.1.4.2739 OTU 2 seqs
prokMSA_id:43305 rumen 4C28d-13 
prokMSA_id:51916 rumen 4C28d-17 
2.30.4.1.4.2753 OTU 5 seqs
prokMSA_id:14025 clone A54
prokMSA_id:26562 adhufec217 
prokMSA_id:29024 GA21 
prokMSA_id:43617 clone HuCA17
prokMSA_id:81160 Clostridium clostridioforme 
2.30.4.1.4.2756 OTU 4 seqs
prokMSA_id:17208 adhufec150 AF132238
prokMSA_id:21408 rumen 4C28d-8 
prokMSA_id:29758 clone HuCA13
prokMSA_id:31554 clone HuCA28
2.30.4.1.4.2757 OTU 2 seqs
prokMSA_id:16757 clone L10-3
prokMSA_id:18180 C13-5 
2.30.4.1.4.2777 OTU 12 seqs
prokMSA_id:27628 clone HuCA8 AJ408964
prokMSA_id:39012 clone HuCB37
prokMSA_id:70219 Butyrate-producing L1-83 
prokMSA_id:91132 clone BREC_68 AY338296
prokMSA_id:91209 clone BREC_7 AY338298
prokMSA_id:91289 clone BREC_5 AY338325
prokMSA_id:91333 clone BREC_31 AY338327
prokMSA_id:91345 clone BREC_76 AY338328
prokMSA_id:91590 clone BREC_65 AY338324
prokMSA_id:91785 clone BREC_42 AY338295
prokMSA_id:91814 clone BREC_91 AY338326
prokMSA_id:91835 clone BREC_24 AY338331
2.30.4.1.4.2782 OTU 3 seqs
prokMSA_id:33341 clone p-596-a5 
prokMSA_id:38044 clone HuCB21
prokMSA_id:77315 A36 
2.30.4.1.4.2783 OTU 11 seqs
prokMSA_id:19457 Clostridium scindens strain:JCM 10423 36S
prokMSA_id:20145 Clostridium scindens strain DSM 5676
prokMSA_id:23008 Clostridium scindens strain:JCM 10422 TH-82 AB020731
prokMSA_id:33482 Clostridium scindens strain:JCM 10418 AB020727
prokMSA_id:37201 Clostridium scindens strain:JCM 10421 I-10
prokMSA_id:39133 Clostridium scindens strain:JCM 10420 M-18
prokMSA_id:45711 Clostridium scindens strain:JCM 6567 AB020883
prokMSA_id:48553 Clostridium scindens strain:JCM 10419 Y-1113
prokMSA_id:50457 Clostridium scindens 
prokMSA_id:54563 sp. VPI 12708 
prokMSA_id:86360 Clostridium scindens 
2.30.4.1.4.2793 OTU 1 seq
prokMSA_id:71434 mpn-isolate group 24 
2.30.4.1.4.2799 OTU 6 seqs
prokMSA_id:23277 sp. C124b 
prokMSA_id:24050 sp. C12b 
prokMSA_id:35683 Lachnobacterium bovis strain LRC 5357 
prokMSA_id:36354 Lachnobacterium bovis strain LRC 5436 
prokMSA_id:37865 Lachnobacterium bovis strain LRC 5382 AF298663
prokMSA_id:52262 Lachnobacterium bovis strain LRC 5405 
2.30.4.1.4.2810 OTU 1 seq
prokMSA_id:25842 clone p-204-o5 
2.30.4.1.4.2809 OTU 1 seq
prokMSA_id:18550 fiber-attaching rumen clone:SY6
2.30.4.1.4.2818 OTU 1 seq
prokMSA_id:46103 clone HuCA23
2.30.4.1.4.2823 OTU 1 seq
prokMSA_id:45306 clone L11-5
2.30.4.1.4.2822 OTU 1 seq
prokMSA_id:42900 equine intestinal sp. CL34 clone CL34
2.30.4.1.4.2828 OTU 1 seq
prokMSA_id:29205 clone p-57-a5 
2.30.4.1.4.2826 OTU 1 seq
prokMSA_id:22371 clone p-2186-s959-3 
2.30.4.1.4.2830 OTU 1 seq
prokMSA_id:25934 adhufec68 
2.30.4.1.4.2841 OTU 1 seq
prokMSA_id:70254 clone p-50-a5 
2.30.4.1.4.2847 OTU 1 seq
prokMSA_id:42920 equine intestinal sp. MW01 clone MW01
2.30.4.1.4.2855 OTU 1 seq
prokMSA_id:34116 equine intestinal sp. PL03 clone PL03
2.30.4.1.4.2856 OTU 1 seq
prokMSA_id:30622 clone p-1817-c3 
2.30.4.1.4.2863 OTU 1 seq
prokMSA_id:49764 ckncm183-F3M.2G2 
2.30.4.1.4.2895 OTU 1 seq
prokMSA_id:17263 equine intestinal sp. DL38 clone DL38
2.30.4.1.4.2894 OTU 1 seq
prokMSA_id:19873 clone p-416-o3 
2.30.4.1.4.2897 OTU 1 seq
prokMSA_id:52780 equine intestinal sp. DW01 clone DW01
2.30.4.1.4.2902 OTU 3 seqs
prokMSA_id:38415 clone L10-9
prokMSA_id:45623 clone L10-2 AJ400265
prokMSA_id:51677 clone L10-21
2.30.4.1.4.2898 OTU 8 seqs
prokMSA_id:30495 adhufec420 AF132271
prokMSA_id:38717 Clostridiaceae str. LEMV61 AF446129
prokMSA_id:39079 sp. III-35 
prokMSA_id:58016 clone:C-52 AB094156
prokMSA_id:61097 clone cadhufec010h7 AF530297
prokMSA_id:89849 inhufecB-27 AY328371
prokMSA_id:92241 clone DONOR_41 AY343310
prokMSA_id:94532 clone Dpcom147 AY386237
2.30.4.1.4.2923 OTU 1 seq
prokMSA_id:77728 candidate division OP11 clone:Rs-J47
2.30.4.1.4.2924 OTU 1 seq
prokMSA_id:44883 clone p-2486-18B5 
2.30.4.1.4.2938 OTU 1 seq
prokMSA_id:32727 clone p-1612-c5 
2.30.4.1.4.2963 OTU 1 seq
prokMSA_id:33245 TMB39 
2.30.4.1.4.2965 OTU 1 seq
prokMSA_id:68343 Lachnospiraceae oral clone MCE9_173 E4 
2.30.4.1.4.2970 OTU 1 seq
prokMSA_id:68346 Lachnospiraceae oral clone MCE7_60 E1 
2.30.4.1.4.2968 OTU 1 seq
prokMSA_id:43159 clone p-1512-b5 
2.30.4.1.4.2974 OTU 1 seq
prokMSA_id:14013 clone RFN14
2.30.4.1.4.2975 OTU 1 seq
prokMSA_id:14015 clone adhufec80.25
2.30.4.1.4.2981 OTU 1 seq
prokMSA_id:14016 Clostridium oroticum ATCC 13619
2.30.4.1.4.2983 OTU 1 seq
prokMSA_id:14018 clone X112
2.30.4.1.4.2986 OTU 1 seq
prokMSA_id:39350 clone p-2168-959-3 
2.30.4.1.4.2999 OTU 1 seq
prokMSA_id:34413 clone p-2182-959-3 
2.30.4.1.4.3004 OTU 1 seq
prokMSA_id:74779 Clostridium hylemonae strain:TN-272
2.30.4.1.4.3005 OTU 1 seq
prokMSA_id:41672 ckncm188-F3M.1H3 
2.30.4.1.4.3007 OTU 1 seq
prokMSA_id:40482 Clostridiaceae str. LEMV78 
2.30.4.1.4.3017 OTU 1 seq
prokMSA_id:78204 clone:Rs-D48
2.30.4.1.4.3028 OTU 2 seqs
prokMSA_id:14012 Ruminococcus torques ATCC 27756
prokMSA_id:38313 clone HuCB10
2.30.4.1.4.3070 OTU 1 seq
prokMSA_id:37325 equine intestinal sp. DL37 clone DL37
2.30.4.1.4.3076 OTU 7 seqs
prokMSA_id:14017 fissicatena DSM 3598 . NONE
prokMSA_id:16544 clone p-44-a5 
prokMSA_id:18972 Butyrate-producing A2-231 AJ270484
prokMSA_id:24546 Clostridium leptum 
prokMSA_id:35150 Clostridium hylemonae strain:TN-271
prokMSA_id:46947 clone p-2561-9F5 
prokMSA_id:81063 Clostridium nexile 
2.30.4.1.4.3091 OTU 1 seq
prokMSA_id:50105 clone p-2195-s959-3 
2.30.4.1.4.3105 OTU 1 seq
prokMSA_id:34466 Firmicutes sp. oral clone CK051 
2.30.4.1.4.3116 OTU 1 seq
prokMSA_id:50579 equine intestinal clone:YT29
2.30.4.1.4.3120 OTU 1 seq
prokMSA_id:44560 clone p-196-o5 
2.30.4.1.4.3118 OTU 1 seq
prokMSA_id:36611 clone p-3022-SwA5 
2.30.4.1.4.3147 OTU 1 seq
prokMSA_id:35682 CCAJG140 
2.30.4.1.4.3159 OTU 1 seq
prokMSA_id:30334 Parasporobacterium paucivorans strain SYR1
2.30.4.1.4.3163 OTU 1 seq
prokMSA_id:17494 Clostridium fimetarium 
2.30.4.1.4.3166 OTU 1 seq
prokMSA_id:24522 clone p-3487-9F3 
2.30.4.1.4.3172 OTU 1 seq
prokMSA_id:34020 clone p-2044-s959-5 
2.30.4.1.4.3189 OTU 3 seqs
prokMSA_id:14032 Ruminococcus gnavus ATCC 29149
prokMSA_id:14034 Ruminococcus gnavus ATCC 29149
prokMSA_id:88198 inhufecA-23 AY328362
2.30.4.1.4.3210 OTU 1 seq
prokMSA_id:44311 rumen 3C3d-15 
2.30.4.1.4.3208 OTU 1 seq
prokMSA_id:48120 clone p-2184-s959-3 
2.30.4.1.4.3215 OTU 1 seq
prokMSA_id:37025 clone CIAJG49 
2.30.4.1.4.3225 OTU 1 seq
prokMSA_id:71387 sp. oral clone DO008 
2.30.4.1.4.3228 OTU 1 seq
prokMSA_id:33681 clone p-2581-9F5 
2.30.4.1.4.3229 OTU 1 seq
prokMSA_id:27193 ckncm153-F1M.2G8 
2.30.4.1.4.3226 OTU 1 seq
prokMSA_id:45581 clone p-3-a5 
2.30.4.1.4.3234 OTU 1 seq
prokMSA_id:14021 Sporobacterium olearius str. SR1 DSM 12504
2.30.4.1.4.3238 OTU 1 seq
prokMSA_id:14023 clone A11
2.30.4.1.4.3235 OTU 1 seq
prokMSA_id:14022 clone JW29
2.30.4.1.4.3242 OTU 1 seq
prokMSA_id:41448 equine intestinal sp. DW05 clone DW05
2.30.4.1.4.3244 OTU 1 seq
prokMSA_id:14026 clone RFN48
2.30.4.1.4.3245 OTU 1 seq
prokMSA_id:14027 clone RFN66
2.30.4.1.5 BTV.FIBRISOLVENS_SUBGROUP 99 seqs
2.30.4.1.5.2683 OTU 1 seq
prokMSA_id:32556 Butyrate-producing L2-21 
2.30.4.1.5.2712 OTU 1 seq
prokMSA_id:25005 clone p-1276-a5 
2.30.4.1.5.2741 OTU 1 seq
prokMSA_id:14047 clone RC27
2.30.4.1.5.2737 OTU 1 seq
prokMSA_id:14043 clone RF22
2.30.4.1.5.2742 OTU 1 seq
prokMSA_id:14048 Butyrivibrio fibrisolvens str. T63
2.30.4.1.5.2774 OTU 1 seq
prokMSA_id:14041 clone RC32
2.30.4.1.5.2781 OTU 4 seqs
prokMSA_id:23274 rumen 2C28d-6 
prokMSA_id:34221 rumen 2C28d-12 AB034118
prokMSA_id:34495 rumen 2C28d-1 
prokMSA_id:54674 rumen 2C28d-5 
2.30.4.1.5.2789 OTU 2 seqs
prokMSA_id:16628 equine intestinal sp. DL32 clone DL32
prokMSA_id:51234 equine intestinal sp. MW09 clone MW09
2.30.4.1.5.2801 OTU 1 seq
prokMSA_id:81139 Butyrivibrio fibrisolvens 
2.30.4.1.5.2814 OTU 3 seqs
prokMSA_id:36059 clone HuCA29 AJ408980
prokMSA_id:44776 adhufec310 AF132260
prokMSA_id:69909 ramulus 
2.30.4.1.5.2815 OTU 3 seqs
prokMSA_id:44493 Shuttleworthia satelles AF399956
prokMSA_id:70087 sp. oral clone EH006 AF385570
prokMSA_id:73645 sp. oral clone DN050 
2.30.4.1.5.2820 OTU 1 seq
prokMSA_id:48572 Pseudobutyrivibrio xylanovorans strain JK 633
2.30.4.1.5.2825 OTU 1 seq
prokMSA_id:14049 Butyrivibrio fibrisolvens str. LP1265
2.30.4.1.5.2833 OTU 1 seq
prokMSA_id:21868 equine intestinal sp. DL20 clone DL20
2.30.4.1.5.2834 OTU 5 seqs
prokMSA_id:14058 Butyrivibrio fibrisolvens str. OB189
prokMSA_id:14059 Butyrivibrio fibrisolvens str. OB156
prokMSA_id:14066 Butyrivibrio fibrisolvens str. OB192
prokMSA_id:14067 Butyrivibrio fibrisolvens str. OB157
prokMSA_id:52841 Butyrivibrio fibrisolvens strain OB146 
2.30.4.1.5.2844 OTU 7 seqs
prokMSA_id:14046 Pseudobutyrivibrio ruminis str. A12-1 DSM 9787
prokMSA_id:14061 Butyrivibrio fibrisolvens str. Bu 21 NCDO 2399
prokMSA_id:14062 clone RFN34
prokMSA_id:14065 Butyrivibrio fibrisolvens str. CF3
prokMSA_id:19835 Pseudobutyrivibrio ruminis strain pC-XS2 
prokMSA_id:36852 Butyrivibrio cf. fibrisolvens EAT6 
prokMSA_id:74850 Pseudobutyrivibrio ruminis strain pC-XS6 
2.30.4.1.5.2909 OTU 1 seq
prokMSA_id:24372 equine intestinal sp. PW17 clone PW17
2.30.4.1.5.2919 OTU 1 seq
prokMSA_id:28914 clone p-2418-55G5 
2.30.4.1.5.2953 OTU 1 seq
prokMSA_id:30190 equine intestinal sp. ML40 clone ML40
2.30.4.1.5.2952 OTU 1 seq
prokMSA_id:72430 Butyrate-producing L1-81 
2.30.4.1.5.2980 OTU 1 seq
prokMSA_id:41673 clone p-2176-s959-3 
2.30.4.1.5.2991 OTU 2 seqs
prokMSA_id:72301 rumen 3C3d-8 
prokMSA_id:73371 rumen 4C3d-14 AB034064
2.30.4.1.5.3000 OTU 1 seq
prokMSA_id:42360 clone p-2205-s959-3 
2.30.4.1.5.3009 OTU 1 seq
prokMSA_id:14064 clone vadinBC06
2.30.4.1.5.3008 OTU 1 seq
prokMSA_id:16353 clone p-1925-962-3 
2.30.4.1.5.3013 OTU 1 seq
prokMSA_id:14060 clone JW18
2.30.4.1.5.3046 OTU 1 seq
prokMSA_id:41850 equine intestinal sp. DL17 clone DL17
2.30.4.1.5.3059 OTU 21 seqs
prokMSA_id:14040 Butyrivibrio fibrisolvens str. 49
prokMSA_id:14042 clone RC13
prokMSA_id:14044 Butyrivibrio fibrisolvens NCDO 2223
prokMSA_id:14045 Butyrivibrio fibrisolvens str. H10b
prokMSA_id:14050 Butyrivibrio fibrisolvens NCDO 2249
prokMSA_id:14051 Butyrivibrio fibrisolvens str. B835
prokMSA_id:14052 Butyrivibrio sp. str. sp45
prokMSA_id:14053 Butyrivibrio sp. str. sp42
prokMSA_id:14054 Butyrivibrio fibrisolvens str. AR27
prokMSA_id:14055 Butyrivibrio fibrisolvens str. OB236
prokMSA_id:14056 Butyrivibrio fibrisolvens str. OR35
prokMSA_id:14057 Butyrivibrio fibrisolvens str. OR79
prokMSA_id:14063 Butyrivibrio fibrisolvens NCDO 2397
prokMSA_id:18666 Pseudobutyrivibrio ruminis strain JK 626
prokMSA_id:21769 Pseudobutyrivibrio xylanovorans strain JK 23/2
prokMSA_id:23954 rumen 4C3d-11 
prokMSA_id:36497 Pseudobutyrivibrio xylanovorans strain Mz 5
prokMSA_id:42103 rumen 4C3d-7 
prokMSA_id:42110 Butyrivibrio fibrisolvens strain 1.230
prokMSA_id:45953 Butyrivibrio fibrisolvens strain 16.4
prokMSA_id:70650 Butyrivibrio fibrisolvens 
2.30.4.1.5.3072 OTU 1 seq
prokMSA_id:41204 clone p-2354-55G5 
2.30.4.1.5.3075 OTU 5 seqs
prokMSA_id:20827 Butyrate-producing L1-93 
prokMSA_id:32710 Butyrate-producing A2-183 
prokMSA_id:42286 adhufec225 
prokMSA_id:70039 Roseburia intestinalis strain L1-82
prokMSA_id:73965 clone p-616-a5 
2.30.4.1.5.3113 OTU 3 seqs
prokMSA_id:17906 rumen 5C3d-5 
prokMSA_id:23832 rumen 5C3d-20 
prokMSA_id:30898 rumen 5C3d-16 AB034062
2.30.4.1.5.3123 OTU 1 seq
prokMSA_id:45296 clone p-61-a5 
2.30.4.1.5.3150 OTU 1 seq
prokMSA_id:49854 clone p-3848-23G3 
2.30.4.1.5.3149 OTU 12 seqs
prokMSA_id:14038 rectale ATCC 33656 . L34627
prokMSA_id:35147 Butyrate-producing A1-86 AJ270475
prokMSA_id:36445 clone HuCB14
prokMSA_id:44330 Butyrate-producing T1-815 AJ270476
prokMSA_id:58030 sp. CB4 AB064884
prokMSA_id:62219 sp. clone:NB2A11 AB064721
prokMSA_id:70078 adhufec8 
prokMSA_id:81674 rectale 
prokMSA_id:84111 clone ABLC21 AF499882
prokMSA_id:87206 clone: OLDA-A9 AB099747
prokMSA_id:88070 inhufecB-36 AY328375
prokMSA_id:92704 clone DONOR_61 AY343303
2.30.4.1.5.3156 OTU 1 seq
prokMSA_id:36823 equine intestinal sp. ML09 clone ML09
2.30.4.1.5.3158 OTU 1 seq
prokMSA_id:29269 equine intestinal sp. CW10 clone CW10
2.30.4.1.5.3165 OTU 2 seqs
prokMSA_id:72630 saburreum-like sp. oral clone CK004 
prokMSA_id:73120 Lachnospiraceae oral clone MCE9_104 E2 
2.30.4.1.5.3162 OTU 2 seqs
prokMSA_id:34889 rumen 2C28d-4 
prokMSA_id:40464 rumen 2C28d-7 AB034122
2.30.4.1.5.3176 OTU 1 seq
prokMSA_id:30192 equine intestinal sp. CL24 clone CL24
2.30.4.1.5.3177 OTU 1 seq
prokMSA_id:18923 equine intestinal sp. PL34 clone PL34
2.30.4.1.5.3205 OTU 1 seq
prokMSA_id:30420 equine intestinal sp. ML22 clone ML22
2.30.4.1.6 EUB.VENTRIOSUM_SUBGROUP 25 seqs
2.30.4.1.6.2676 OTU 1 seq
prokMSA_id:14069 Clostridium indolis str. CM971
2.30.4.1.6.2709 OTU 1 seq
prokMSA_id:33369 Butyrate-producing L2-12 
2.30.4.1.6.2708 OTU 1 seq
prokMSA_id:72606 AA02 
2.30.4.1.6.2735 OTU 2 seqs
prokMSA_id:32228 clone p-1529-b5 AF371637
prokMSA_id:77449 A13 
2.30.4.1.6.2758 OTU 2 seqs
prokMSA_id:29903 clone p-190-o5 
prokMSA_id:34847 clone p-242-o5 
2.30.4.1.6.2771 OTU 4 seqs
prokMSA_id:16944 Butyrate-producing L1-92 
prokMSA_id:31621 08.96.4 complete 
prokMSA_id:48557 AA04 
prokMSA_id:74649 clone UASB_brew_B16 
2.30.4.1.6.2843 OTU 1 seq
prokMSA_id:42123 equine intestinal sp. CL17 clone CL17
2.30.4.1.6.2857 OTU 1 seq
prokMSA_id:47001 equine intestinal sp. ML31 clone ML31
2.30.4.1.6.2870 OTU 1 seq
prokMSA_id:37397 equine intestinal sp. DW21 clone DW21
2.30.4.1.6.2914 OTU 1 seq
prokMSA_id:27728 equine intestinal sp. PL01 clone PL01
2.30.4.1.6.2958 OTU 1 seq
prokMSA_id:20288 equine intestinal sp. ML21 clone ML21
2.30.4.1.6.2969 OTU 1 seq
prokMSA_id:49088 adhufec236 
2.30.4.1.6.2994 OTU 1 seq
prokMSA_id:81051 clone: Rs-L15
2.30.4.1.6.3001 OTU 2 seqs
prokMSA_id:53144 adhufec71.25 AF153862
prokMSA_id:72481 clone HuCA20
2.30.4.1.6.3048 OTU 1 seq
prokMSA_id:33833 clone p-1321-a5 
2.30.4.1.6.3107 OTU 2 seqs
prokMSA_id:16477 oxidoreducens strain G2-2 
prokMSA_id:38558 oxidoreducens strain DAS110 
2.30.4.1.6.3133 OTU 1 seq
prokMSA_id:37010 rumen 5C0d-13 
2.30.4.1.6.3175 OTU 1 seq
prokMSA_id:50208 clone p-2169-s959-3 
2.30.4.1.7 LCN.MULTIPARA_SUBGROUP 17 seqs
2.30.4.1.7.2658 OTU 1 seq
prokMSA_id:47452 clone p-17-a5 
2.30.4.1.7.2663 OTU 1 seq
prokMSA_id:50530 clone p-2016-s959-5 
2.30.4.1.7.2719 OTU 1 seq
prokMSA_id:46667 clone p-268-o5 
2.30.4.1.7.2760 OTU 2 seqs
prokMSA_id:42680 clone p-327-a3 
prokMSA_id:72033 clone p-189-o5 
2.30.4.1.7.2930 OTU 1 seq
prokMSA_id:58017 clone:C-2
2.30.4.1.7.3016 OTU 4 seqs
prokMSA_id:14076 eligens ATCC 27750 . L34420
prokMSA_id:21126 clone HuCA40 AJ408985
prokMSA_id:51050 adhufec85 
prokMSA_id:91803 clone BREC_37 AY338355
2.30.4.1.7.3038 OTU 1 seq
prokMSA_id:68841 clone p-1594-c5 
2.30.4.1.7.3092 OTU 1 seq
prokMSA_id:52718 equine intestinal sp. DW17 clone DW17
2.30.4.1.7.3122 OTU 1 seq
prokMSA_id:22236 clone p-7-a5 
2.30.4.1.7.3126 OTU 1 seq
prokMSA_id:14073 "pectinii" str. P-1 DSM 6788
2.30.4.1.7.3171 OTU 1 seq
prokMSA_id:82283 Lachnospira pectinoschiza 
2.30.4.1.7.3185 OTU 2 seqs
prokMSA_id:26597 clone p-1750-b3 
prokMSA_id:33320 clone p-1692-b3 
2.30.4.1.8 C.POLYSACCHAROLYTICUM_SUBGROUP 56 seqs
2.30.4.1.8.2659 OTU 1 seq
prokMSA_id:74874 fiber-attaching rumen SY7 
2.30.4.1.8.2693 OTU 8 seqs
prokMSA_id:14081 ruminantium str. GA 195 ATCC 17233 . AB008552
prokMSA_id:31513 rumen clone:5ER
prokMSA_id:31710 rumen clone:2ER
prokMSA_id:31834 rumen clone:7ER
prokMSA_id:34599 rumen clone:1ER
prokMSA_id:36238 rumen clone:3ER
prokMSA_id:39286 rumen clone:6ER AB056167
prokMSA_id:48656 rumen clone:4ER
2.30.4.1.8.2740 OTU 2 seqs
prokMSA_id:14093 plexicaudatum str. ASF 492
prokMSA_id:14094 plexicaudatum ATCC 27514
2.30.4.1.8.2827 OTU 1 seq
prokMSA_id:48583 Catonella sp. oral clone BR063 
2.30.4.1.8.2864 OTU 1 seq
prokMSA_id:73894 Catonella sp. oral clone AH153 
2.30.4.1.8.2875 OTU 1 seq
prokMSA_id:46613 rumen clone:9ER
2.30.4.1.8.2876 OTU 1 seq
prokMSA_id:47342 equine intestinal sp. CL18 clone CL18
2.30.4.1.8.2882 OTU 3 seqs
prokMSA_id:14085 clone A19
prokMSA_id:26113 adhufec46.25 AF153856
prokMSA_id:35020 adhufec157 
2.30.4.1.8.2885 OTU 1 seq
prokMSA_id:47274 fiber-attaching rumen SY13 
2.30.4.1.8.2892 OTU 2 seqs
prokMSA_id:14089 Clostridium polysaccharolyticum ATCC 33142
prokMSA_id:14090 Clostridium polysaccharolyticum DSM 1801
2.30.4.1.8.2904 OTU 1 seq
prokMSA_id:34139 clone p-1573-b5 
2.30.4.1.8.2912 OTU 1 seq
prokMSA_id:20026 rumen clone:8ER
2.30.4.1.8.2939 OTU 1 seq
prokMSA_id:20421 clone p-444-o3 
2.30.4.1.8.2943 OTU 1 seq
prokMSA_id:62513 MDA2477 
2.30.4.1.8.2947 OTU 2 seqs
prokMSA_id:47862 clone p-600-a5 AF371654
prokMSA_id:68840 clone p-339-a3 
2.30.4.1.8.2992 OTU 1 seq
prokMSA_id:31119 equine intestinal sp. DL07 clone DL07
2.30.4.1.8.2997 OTU 1 seq
prokMSA_id:45915 fiber-attaching rumen clone:SY24
2.30.4.1.8.3033 OTU 6 seqs
prokMSA_id:17859 isolate HuCC15
prokMSA_id:27613 clone HuCB26
prokMSA_id:28879 clone HuCA15
prokMSA_id:29597 A07 complete 
prokMSA_id:52410 clone p-2001-s959-5 AF371658
prokMSA_id:70163 Butyrate-producing L2-7 
2.30.4.1.8.3035 OTU 1 seq
prokMSA_id:14092 clone JW24
2.30.4.1.8.3061 OTU 1 seq
prokMSA_id:40124 Butyrate-producing L2-50 
2.30.4.1.8.3071 OTU 1 seq
prokMSA_id:46273 firmicute clone CD13F11 
2.30.4.1.8.3078 OTU 1 seq
prokMSA_id:27706 equine intestinal sp. ML33 clone ML33
2.30.4.1.8.3097 OTU 1 seq
prokMSA_id:41212 adhufec295 
2.30.4.1.8.3094 OTU 1 seq
prokMSA_id:25904 clone p-197-o5 
2.30.4.1.8.3109 OTU 2 seqs
prokMSA_id:14096 Catonella morbi ATCC 51271
prokMSA_id:40708 Catonella sp. oral clone EZ006 
2.30.4.1.8.3140 OTU 1 seq
prokMSA_id:14079 clone RF5
2.30.4.1.8.3144 OTU 1 seq
prokMSA_id:51382 equine intestinal sp. CL07 clone CL07
2.30.4.1.8.3161 OTU 1 seq
prokMSA_id:25995 rumen 4C0d-12 
2.30.4.1.8.3173 OTU 1 seq
prokMSA_id:14080 clone RF24
2.30.4.1.8.3178 OTU 1 seq
prokMSA_id:27817 fiber-attaching rumen clone:SY31
2.30.4.1.8.3194 OTU 1 seq
prokMSA_id:14083 clone RC36
2.30.4.1.8.3196 OTU 1 seq
prokMSA_id:14084 clone JW33
2.30.4.1.8.3203 OTU 1 seq
prokMSA_id:26949 equine intestinal sp. PL12 clone PL12
2.30.4.1.8.3202 OTU 1 seq
prokMSA_id:14086 Coprococcus eutactus ATCC 27759
2.30.4.1.8.3204 OTU 1 seq
prokMSA_id:14088 clone JW11
2.30.4.1.8.3212 OTU 1 seq
prokMSA_id:71783 ckncm327-B6-72 
2.30.4.1.8.3222 OTU 1 seq
prokMSA_id:37633 clone p-2025-s959-5 
2.30.4.1.8.3240 OTU 1 seq
prokMSA_id:16512 clone p-2566-9F5 
2.30.4.1.9 C.AMINOVALERICUM_SUBGROUP 24 seqs
2.30.4.1.9.2665 OTU 1 seq
prokMSA_id:36892 clone p-2409-55G5 
2.30.4.1.9.2671 OTU 1 seq
prokMSA_id:14100 clone M30
2.30.4.1.9.2682 OTU 1 seq
prokMSA_id:18245 clone:BCf4-09
2.30.4.1.9.2687 OTU 2 seqs
prokMSA_id:14103 str. HESP1 DSM 12503
prokMSA_id:84603 rumen clone BE38 AY244954
2.30.4.1.9.2684 OTU 1 seq
prokMSA_id:14101 Clostridium XB90 str. XB90
2.30.4.1.9.2690 OTU 1 seq
prokMSA_id:14105 Clostridium aminovalericum DSM 1283
2.30.4.1.9.2717 OTU 2 seqs
prokMSA_id:14098 clone adhufec37.25. AF153857
prokMSA_id:20939 clone HuCB56
2.30.4.1.9.2819 OTU 1 seq
prokMSA_id:49372 equine intestinal sp. ML04 clone ML04
2.30.4.1.9.2851 OTU 1 seq
prokMSA_id:28702 clone p-322-a3 
2.30.4.1.9.2868 OTU 1 seq
prokMSA_id:51036 equine intestinal sp. CW15 clone CW15
2.30.4.1.9.2941 OTU 1 seq
prokMSA_id:41178 clone p-211-o5 
2.30.4.1.9.2950 OTU 1 seq
prokMSA_id:48887 from anoxic bulk soil clone BSV61
2.30.4.1.9.2964 OTU 1 seq
prokMSA_id:49154 RSb40 
2.30.4.1.9.3022 OTU 1 seq
prokMSA_id:23653 from anoxic bulk soil clone BSV70
2.30.4.1.9.3041 OTU 1 seq
prokMSA_id:14099 Clostridium populeti ATCC 35295
2.30.4.1.9.3062 OTU 1 seq
prokMSA_id:50757 clone p-3181-SwA3 
2.30.4.1.9.3095 OTU 2 seqs
prokMSA_id:41849 equine intestinal sp. ML15 clone ML15
prokMSA_id:45632 equine intestinal sp. PL30 clone PL30
2.30.4.1.9.3115 OTU 1 seq
prokMSA_id:21698 clone p-273-o5 
2.30.4.1.9.3129 OTU 1 seq
prokMSA_id:24243 clone g14Br5 
2.30.4.1.9.3170 OTU 1 seq
prokMSA_id:16766 clone p-1807-c3 
2.30.4.1.9.3198 OTU 1 seq
prokMSA_id:28479 Clostridiaceae str. 80Wc 
2.30.4.2 C.PROPIONICUM_GROUP 26 seqs
2.30.4.2.1 C.PROPIONICUM_SUBGROUP 18 seqs
2.30.4.2.1.2691 OTU 1 seq
prokMSA_id:14106 Clostridium propionicum DSM 1682
2.30.4.2.1.2699 OTU 1 seq
prokMSA_id:14107 str. Iso11_2
2.30.4.2.1.2707 OTU 1 seq
prokMSA_id:14109 Clostridium neopropionicum DSM 3847
2.30.4.2.1.2766 OTU 1 seq
prokMSA_id:14108 Clostridium ASF356 str. ASF 356
2.30.4.2.1.2816 OTU 1 seq
prokMSA_id:82089 MTCE-T2 4C 
2.30.4.2.1.2824 OTU 1 seq
prokMSA_id:29123 clone 6B 
2.30.4.2.1.2846 OTU 1 seq
prokMSA_id:44669 DCE25 
2.30.4.2.1.2921 OTU 1 seq
prokMSA_id:78382 clone:Rs-K95
2.30.4.2.1.2931 OTU 2 seqs
prokMSA_id:77584 clone:Rs-G77
prokMSA_id:81579 clone: Rs-L40 AB100464
2.30.4.2.1.2960 OTU 1 seq
prokMSA_id:46494 clone:BCf10-10
2.30.4.2.1.2967 OTU 1 seq
prokMSA_id:31573 clone p-4496-6Wb3 
2.30.4.2.1.2973 OTU 1 seq
prokMSA_id:50377 clone 6A 
2.30.4.2.1.3057 OTU 1 seq
prokMSA_id:49274 Clostridium lactatifermentans 
2.30.4.2.1.3060 OTU 1 seq
prokMSA_id:77862 clone:Rs-B14
2.30.4.2.1.3134 OTU 1 seq
prokMSA_id:32467 clone p-4247-4Wa3 
2.30.4.2.1.3218 OTU 1 seq
prokMSA_id:77765 clone:Rs-N53
2.30.4.2.1.3233 OTU 1 seq
prokMSA_id:37128 clone:BCf1-11
2.30.4.2.2 C.COLINUM_SUBGROUP 8 seqs
2.30.4.2.2.2681 OTU 1 seq
prokMSA_id:78144 clone:Rs-K41
2.30.4.2.2.2728 OTU 1 seq
prokMSA_id:26279 clone:BCf8-25
2.30.4.2.2.2750 OTU 1 seq
prokMSA_id:42607 Clostridium sp. NT-1 
2.30.4.2.2.2775 OTU 1 seq
prokMSA_id:14114 Clostridium colinum DSM 6011
2.30.4.2.2.2811 OTU 2 seqs
prokMSA_id:14111 str. RT
prokMSA_id:14113 str. RJ
2.30.4.2.2.2829 OTU 1 seq
prokMSA_id:51807 Clostridium sp. NT-2 
2.30.4.2.2.3217 OTU 1 seq
prokMSA_id:77909 clone:Rs-D68
2.30.4.3 C.LENTOCELLUM_GROUP 12 seqs
2.30.4.3.2662 OTU 1 seq
prokMSA_id:39361 clone p-5278-2Wa3 
2.30.4.3.2761 OTU 1 seq
prokMSA_id:14123 str. BD2-14
2.30.4.3.2762 OTU 1 seq
prokMSA_id:14125 str. PS7
2.30.4.3.2763 OTU 2 seqs
prokMSA_id:14120 Epulopiscium sp. str. morphotype A1
prokMSA_id:14121 Epulopiscium fishelsoni str. Red Sea A1
2.30.4.3.2900 OTU 1 seq
prokMSA_id:80119 candidate division SR1 clone SRB2 
2.30.4.3.2922 OTU 1 seq
prokMSA_id:50432 gram-positive HOC39 
2.30.4.3.2942 OTU 1 seq
prokMSA_id:14126 Metabacterium polyspora
2.30.4.3.2944 OTU 1 seq
prokMSA_id:14127 Metabacterium polyspora
2.30.4.3.2948 OTU 1 seq
prokMSA_id:14128 Epulopiscium sp. str. morphotype B
2.30.4.3.2951 OTU 1 seq
prokMSA_id:14129 Epulopiscium sp. str. morphotype A2
2.30.4.3.3011 OTU 1 seq
prokMSA_id:14130 Epulopiscium fishelsoni str. Red Sea A2
2.30.4.4 EUBACTERIUM_GROUP 89 seqs
2.30.4.4.1 C.HALOPHILUM 1 seq
2.30.4.4.1.2984 OTU 1 seq
prokMSA_id:14131 Clostridium halophilum DSM 5387
2.30.4.4.2 AAB.HYDROGENOFORMANS_SUBGROUP 20 seqs
2.30.4.4.2.2716 OTU 1 seq
prokMSA_id:77959 Clostridiaceae clone:Rs-F76
2.30.4.4.2.2721 OTU 1 seq
prokMSA_id:77890 clone:Rs-N71
2.30.4.4.2.2727 OTU 1 seq
prokMSA_id:77964 Clostridiaceae clone:Rs-E70
2.30.4.4.2.2729 OTU 1 seq
prokMSA_id:66940 clone SHA-58
2.30.4.4.2.2764 OTU 1 seq
prokMSA_id:59830 clone OB3_52 
2.30.4.4.2.2807 OTU 1 seq
prokMSA_id:41951 clone Ebpr14 
2.30.4.4.2.2832 OTU 1 seq
prokMSA_id:25067 low-GC gram+ kpa86rc 
2.30.4.4.2.2852 OTU 1 seq
prokMSA_id:27616 AA33 
2.30.4.4.2.2880 OTU 1 seq
prokMSA_id:72230 AA05 
2.30.4.4.2.2990 OTU 1 seq
prokMSA_id:14132 Acidaminobacter hydrogenoformans str. glu 65 DSM 2784
2.30.4.4.2.3006 OTU 1 seq
prokMSA_id:14135 Fusibacter paucivorans SEBR 4211
2.30.4.4.2.3010 OTU 1 seq
prokMSA_id:14137 str. 48.h
2.30.4.4.2.3014 OTU 1 seq
prokMSA_id:14133 clone vadinBB35
2.30.4.4.2.3023 OTU 1 seq
prokMSA_id:83754 clone B04R016 
2.30.4.4.2.3083 OTU 1 seq
prokMSA_id:34789 clone p-2801-24E5 
2.30.4.4.2.3119 OTU 1 seq
prokMSA_id:37414 PM3 
2.30.4.4.2.3125 OTU 1 seq
prokMSA_id:74243 feedlot manure B6 
2.30.4.4.2.3227 OTU 1 seq
prokMSA_id:36762 PM33 
2.30.4.4.2.3237 OTU 1 seq
prokMSA_id:41943 low G+C Gram-positive MERTZ_0CM_115 
2.30.4.4.2.3241 OTU 1 seq
prokMSA_id:50268 clone p-5324-2Wa3 
2.30.4.4.4 C.AMINOBUTYRICUM_SUBGROUP 21 seqs
2.30.4.4.4.2672 OTU 1 seq
prokMSA_id:51211 clone:BCf9-05
2.30.4.4.4.2679 OTU 1 seq
prokMSA_id:41514 clone:BCf9-13
2.30.4.4.4.2694 OTU 1 seq
prokMSA_id:59564 sp. oral clone FX028 
2.30.4.4.4.2710 OTU 1 seq
prokMSA_id:66939 clone SHA-74
2.30.4.4.4.2714 OTU 1 seq
prokMSA_id:77885 clone:Rs-N27
2.30.4.4.4.2722 OTU 1 seq
prokMSA_id:78236 clone:Rs-E61
2.30.4.4.4.2838 OTU 1 seq
prokMSA_id:24052 ckncm132-F1M.2B6 
2.30.4.4.4.2913 OTU 1 seq
prokMSA_id:78301 clone:Rs-N82
2.30.4.4.4.2933 OTU 1 seq
prokMSA_id:14145 Clostridium aminobutyricum DSM 2634
2.30.4.4.4.2977 OTU 1 seq
prokMSA_id:41744 clone TDC-S5:80 
2.30.4.4.4.2988 OTU 1 seq
prokMSA_id:82172 clone: Rs-050
2.30.4.4.4.3068 OTU 1 seq
prokMSA_id:22544 equine intestinal sp. MW21 clone MW21
2.30.4.4.4.3080 OTU 1 seq
prokMSA_id:78018 clone:Rs-F43
2.30.4.4.4.3112 OTU 2 seqs
prokMSA_id:77744 clone:Rs-B74
prokMSA_id:77824 clone:Rs-M09
2.30.4.4.4.3124 OTU 1 seq
prokMSA_id:33133 clone p-3212-42A2 
2.30.4.4.4.3130 OTU 1 seq
prokMSA_id:14148 clone Sva1064
2.30.4.4.4.3182 OTU 1 seq
prokMSA_id:77831 clone:Rs-Q64
2.30.4.4.4.3187 OTU 1 seq
prokMSA_id:20310 clone p-4199-6Wa5 
2.30.4.4.4.3192 OTU 1 seq
prokMSA_id:42984 Eub No. 20 
2.30.4.4.4.3220 OTU 1 seq
prokMSA_id:66192 clone IA-19
2.30.4.4.5 EUB.SAPHENUM 1 seq
2.30.4.4.5.3131 OTU 1 seq
prokMSA_id:14149 saphenum ATCC 49989
2.30.4.4.6 EUB.NODATUM_SUBGROUP 14 seqs
2.30.4.4.6.2701 OTU 3 seqs
prokMSA_id:39613 rumen 4C3d-12 AB034093
prokMSA_id:43800 rumen 3C3d-6 AB034092
prokMSA_id:50860 pyruvivorans 
2.30.4.4.6.2792 OTU 5 seqs
prokMSA_id:14150 tardum str. SC 87K
prokMSA_id:14151 minutum ATCC 700079
prokMSA_id:14153 minutum ATCC 700079
prokMSA_id:14154 tardum str. SC 87K
prokMSA_id:72513 tardum SC 87K 
2.30.4.4.6.2946 OTU 1 seq
prokMSA_id:23113 rumen 3C28d-4 
2.30.4.4.6.2993 OTU 1 seq
prokMSA_id:59533 oral clone P2PB_46 P3 
2.30.4.4.6.3164 OTU 1 seq
prokMSA_id:14152 C2 str. C2
2.30.4.4.6.3193 OTU 2 seqs
prokMSA_id:14155 nodatum str. AK-5 ATCC 33099 . U13041
prokMSA_id:14156 nodatum str. AK-5 ATCC 33099
2.30.4.4.6.3214 OTU 1 seq
prokMSA_id:37961 rumen 3C0d-17 
2.30.4.4.7 EUB.BRACHY_SUBGROUP 32 seqs
2.30.4.4.7.2723 OTU 1 seq
prokMSA_id:18066 rumen 3C0d-10 
2.30.4.4.7.2738 OTU 4 seqs
prokMSA_id:14164 Mogibacterium pumilum str. D2-18
prokMSA_id:14167 Mogibacterium vescum str. D5-2
prokMSA_id:18995 Mogibacterium diversum 
prokMSA_id:46159 Mogibacterium neglectum 
2.30.4.4.7.2751 OTU 1 seq
prokMSA_id:43339 sp. oral clone CK047 
2.30.4.4.7.2752 OTU 1 seq
prokMSA_id:43267 clone p-648-a5 
2.30.4.4.7.2773 OTU 2 seqs
prokMSA_id:28381 clone p-1032-a5 
prokMSA_id:76547 Swine manure 37-2 
2.30.4.4.7.2772 OTU 1 seq
prokMSA_id:78354 clone:Rs-M13
2.30.4.4.7.2800 OTU 2 seqs
prokMSA_id:14163 timidum
prokMSA_id:14166 timidum
2.30.4.4.7.2805 OTU 1 seq
prokMSA_id:59565 sp. oral clone FX033 
2.30.4.4.7.2813 OTU 1 seq
prokMSA_id:52379 Anaerovorax odorimutans strain NorPut
2.30.4.4.7.2896 OTU 1 seq
prokMSA_id:45635 fiber-attaching rumen SY12 
2.30.4.4.7.2916 OTU 1 seq
prokMSA_id:44950 rumen 5C0d-8 
2.30.4.4.7.2925 OTU 1 seq
prokMSA_id:36792 clone p-83-a5 
2.30.4.4.7.2972 OTU 1 seq
prokMSA_id:16550 rumen 4C28d-20 
2.30.4.4.7.3018 OTU 2 seqs
prokMSA_id:14165 clone RF35
prokMSA_id:17051 rumen 3C0d-4 
2.30.4.4.7.3034 OTU 1 seq
prokMSA_id:14161 clone RF21
2.30.4.4.7.3106 OTU 1 seq
prokMSA_id:21556 ckncm209-F4M.1F3 
2.30.4.4.7.3139 OTU 1 seq
prokMSA_id:46317 equine intestinal sp. CL32 clone CL32
2.30.4.4.7.3153 OTU 3 seqs
prokMSA_id:14160 Fusobacterium sulci ATCC 35585
prokMSA_id:34881 sp. oral strain A35MT 
prokMSA_id:71791 infirmum W 1471 
2.30.4.4.7.3197 OTU 2 seqs
prokMSA_id:14157 brachy str. BR-179 ATCC 33089 . Z36272
prokMSA_id:14158 brachy str. BR-179 ATCC 33089
2.30.4.4.7.3200 OTU 2 seqs
prokMSA_id:14159 infirmum str. W 1471; clone 1471-3
prokMSA_id:14162 infirmum str. W 1471; clone 1471-3. U13039
2.30.4.4.7.3216 OTU 1 seq
prokMSA_id:36226 clone p-3263-42A2 
2.30.4.4.7.3230 OTU 1 seq
prokMSA_id:44410 rumen 3C0d-16 
2.30.4.5 C.LITUSEBURENSE_GROUP 111 seqs
2.30.4.5.1 C.FORMICOACETICUM_SUBGROUP 27 seqs
2.30.4.5.1.2657 OTU 1 seq
prokMSA_id:71603 Clostridium alcaliphilum isolate B8NS1-A
2.30.4.5.1.2664 OTU 1 seq
prokMSA_id:60608 clone R35 
2.30.4.5.1.2689 OTU 1 seq
prokMSA_id:25925 Alkalliphilus auruminator 
2.30.4.5.1.2736 OTU 1 seq
prokMSA_id:58790 Alkaliphils metalliredigenes 
2.30.4.5.1.2759 OTU 4 seqs
prokMSA_id:14174 Tindallia magadii str. Z-7934T DSM 10318. Y15626
prokMSA_id:28874 Tindallia sp. APO 
prokMSA_id:40951 Clostridium aminovorans isolate B7FT-A AJ271455
prokMSA_id:51262 Clostridium bogorii isolate B8NS1-C AJ271457
2.30.4.5.1.2768 OTU 1 seq
prokMSA_id:43181 Natronoincola histidinovorans 
2.30.4.5.1.2794 OTU 3 seqs
prokMSA_id:51694 Caminibacillus sporogenes strain AM1114
prokMSA_id:79538 Clostridium sp. Dex60-28 strain Dex60-28
prokMSA_id:79586 Clostridium sp. Dex60-4 strain Dex60-4
2.30.4.5.1.3003 OTU 1 seq
prokMSA_id:79318 Clostridium sp. Dex60-75 strain Dex60-75
2.30.4.5.1.3021 OTU 1 seq
prokMSA_id:67640 Clostridium subatlanticum 
2.30.4.5.1.3039 OTU 1 seq
prokMSA_id:14168 Clostridium formicoaceticum DSM 92
2.30.4.5.1.3040 OTU 1 seq
prokMSA_id:14169 Clostridium felsineum DSM 794
2.30.4.5.1.3051 OTU 1 seq
prokMSA_id:14171 clone EKHO-3
2.30.4.5.1.3053 OTU 1 seq
prokMSA_id:14173 clone ACE-8
2.30.4.5.1.3050 OTU 1 seq
prokMSA_id:14170 clone PENDANT-5
2.30.4.5.1.3052 OTU 1 seq
prokMSA_id:14172 clone ACE-14
2.30.4.5.1.3067 OTU 1 seq
prokMSA_id:40259 Clostridium aceticum strain DSM 1496
2.30.4.5.1.3069 OTU 1 seq
prokMSA_id:42001 firmicute isolate ikaite un-c24
2.30.4.5.1.3084 OTU 1 seq
prokMSA_id:55916 clone RCP2-16 
2.30.4.5.1.3096 OTU 1 seq
prokMSA_id:45283 Alkaliphilus crotonoxidans 
2.30.4.5.1.3104 OTU 1 seq
prokMSA_id:19154 Clostridium elmenteitii isolate E2SE1-B
2.30.4.5.1.3201 OTU 1 seq
prokMSA_id:31552 TCE8 
2.30.4.5.1.3219 OTU 1 seq
prokMSA_id:60603 clone R82 
2.30.4.5.2 C.STICKLANDII_SUBGROUP 10 seqs
2.30.4.5.2.2725 OTU 2 seqs
prokMSA_id:14180 Clostridium litorale DSM 5388 . X77845
prokMSA_id:19395 RFLP15 
2.30.4.5.2.2785 OTU 2 seqs
prokMSA_id:14177 Filifactor villosus ATCC 33388
prokMSA_id:60259 Filifactor villosus strain DSM1645 
2.30.4.5.2.2796 OTU 2 seqs
prokMSA_id:73998 sp. oral clone BB142 
prokMSA_id:86132 P4P_50 P4 
2.30.4.5.2.2859 OTU 2 seqs
prokMSA_id:14175 Clostridium sticklandii str. HF ATCC 12662
prokMSA_id:66195 clone IA-11
2.30.4.5.2.2869 OTU 1 seq
prokMSA_id:51973 Frigovirgula patagoniensis 
2.30.4.5.2.3073 OTU 1 seq
prokMSA_id:14182 acidaminophilum str. a1-2 DSM 3953
2.30.4.5.3 C.PARADOXUM_SUBGROUP 18 seqs
2.30.4.5.3.2915 OTU 1 seq
prokMSA_id:76251 Tepidibacter thalassicus 
2.30.4.5.3.3019 OTU 1 seq
prokMSA_id:83820 Tepidibacter formicigenes 
2.30.4.5.3.3049 OTU 1 seq
prokMSA_id:14189 Clostridium paradoxum str. JW-YL-7 DSM 7308
2.30.4.5.3.3074 OTU 1 seq
prokMSA_id:14184 Clostridium paradoxum str. JW-YL-7 DSM 7308
2.30.4.5.3.3108 OTU 14 seqs
prokMSA_id:14185 Clostridium paradoxum str. JW-YL-7 DSM 7308
prokMSA_id:14186 Clostridium paradoxum str. JW-YL-7 DSM 7308
prokMSA_id:14187 Clostridium paradoxum str. JW-YL-7 DSM 7308
prokMSA_id:14188 Clostridium paradoxum str. JW-YL-7 DSM 7308
prokMSA_id:14190 Clostridium paradoxum str. JW-YL-7 DSM 7308
prokMSA_id:14191 Clostridium paradoxum str. JW-YL-7 DSM 7308
prokMSA_id:14192 Clostridium paradoxum str. JW-YL-7 DSM 7308
prokMSA_id:14193 Clostridium paradoxum str. JW-YL-7 DSM 7308
prokMSA_id:14194 Clostridium paradoxum str. JW-YL-7 DSM 7308
prokMSA_id:14195 Clostridium paradoxum str. JW-YL-7 DSM 7308
prokMSA_id:14196 Clostridium paradoxum str. JW-YL-7 DSM 7308
prokMSA_id:14197 Clostridium paradoxum str. JW-YL-7 DSM 7308
prokMSA_id:14198 Clostridium paradoxum str. JW-YL-7 DSM 7308
prokMSA_id:14199 Clostridium paradoxum str. JW-YL-7 DSM 7308
2.30.4.5.4 EUB.TENUE_SUBGROUP 23 seqs
2.30.4.5.4.2697 OTU 1 seq
prokMSA_id:86240 clone ER1_16 
2.30.4.5.4.2734 OTU 2 seqs
prokMSA_id:22919 NoosaAW40 
prokMSA_id:33869 NoosaAW21 
2.30.4.5.4.2767 OTU 1 seq
prokMSA_id:39443 TM7 phylum sp. oral clone CW040 
2.30.4.5.4.2790 OTU 2 seqs
prokMSA_id:33116 Clostridium sp. FL3 
prokMSA_id:39630 Clostridium sp. FL4 
2.30.4.5.4.2917 OTU 1 seq
prokMSA_id:65697 soil clone C026 
2.30.4.5.4.2932 OTU 1 seq
prokMSA_id:74315 O8SA 
2.30.4.5.4.2935 OTU 2 seqs
prokMSA_id:16614 TM7 phylum sp. oral clone BU080 
prokMSA_id:81990 candidate division TM7 clone SBG2 AY144354
2.30.4.5.4.2940 OTU 1 seq
prokMSA_id:22963 SBR2096 
2.30.4.5.4.2982 OTU 1 seq
prokMSA_id:14203 clone AH040
2.30.4.5.4.2985 OTU 1 seq
prokMSA_id:21239 sp. oral clone BS003 
2.30.4.5.4.3025 OTU 1 seq
prokMSA_id:81216 candidate division TM7 clone: Rs-045
2.30.4.5.4.3044 OTU 3 seqs
prokMSA_id:65413 clone 8A 
prokMSA_id:65418 clone 734 
prokMSA_id:72510 clone 75 
2.30.4.5.4.3081 OTU 1 seq
prokMSA_id:17873 candidate division TM7 clone SM1G12 
2.30.4.5.4.3093 OTU 1 seq
prokMSA_id:45149 SBR2060 
2.30.4.5.4.3098 OTU 1 seq
prokMSA_id:31451 O815 
2.30.4.5.4.3101 OTU 1 seq
prokMSA_id:34534 NoosaAW91 
2.30.4.5.4.3145 OTU 1 seq
prokMSA_id:70379 TM7 phylum sp. oral clone DR034 
2.30.4.5.4.3151 OTU 1 seq
prokMSA_id:65419 clone 71 
2.30.4.5.5 C.BIFERMENTANS_SUBGROUP 12 seqs
2.30.4.5.5.2996 OTU 1 seq
prokMSA_id:14208 clone T37
2.30.4.5.5.3026 OTU 11 seqs
prokMSA_id:14207 Clostridium bifermentans NCIMB 10716
prokMSA_id:14209 Clostridium bifermentans str. DPH-1. Y18787
prokMSA_id:29530 C.bifermentans 
prokMSA_id:33501 Mastodon intestinal AN-17-3 U65715
prokMSA_id:36106 Elbe River snow isolate Iso11_3 AF150692
prokMSA_id:51941 Clostridium bifermentans 
prokMSA_id:70590 Clostridium paraputrificum 
prokMSA_id:72328 Clostridium sp. FL2 AF224673
prokMSA_id:75054 Swine manure RT-4B 
prokMSA_id:76631 Swine manure RT-1A 
prokMSA_id:76955 Swine manure RT-5A 
2.30.4.5.6 C.LITUSEBURENSE 2 seqs
2.30.4.5.6.3031 OTU 1 seq
prokMSA_id:19162 from anoxic bulk soil clone BSV76
2.30.4.5.6.3183 OTU 1 seq
prokMSA_id:22418 Clostridium sp. 48 
2.30.4.5.7 C.GLYCOLICUM_SUBGROUP 8 seqs
2.30.4.5.7.2786 OTU 2 seqs
prokMSA_id:40074 Clostridium glycolicum 
prokMSA_id:84941 Clostridium glycolicum 
2.30.4.5.7.3012 OTU 2 seqs
prokMSA_id:70837 clone p-478-o2 AF371691
prokMSA_id:83050 Clostridium sp. MDA2315 
2.30.4.5.7.3077 OTU 4 seqs
prokMSA_id:14212 Clostridium glycolicum DSM 1288
prokMSA_id:18262 clone p-248-o5 AF371689
prokMSA_id:38819 ZF5 
prokMSA_id:46716 Clostridium sordellii 
2.30.4.5.8 C.DIFFICILE_SUBGROUP 4 seqs
2.30.4.5.8.2778 OTU 4 seqs
prokMSA_id:14215 Clostridium difficile str. N6; Clark 90556-M6S; Mc Clung 178
prokMSA_id:14216 Clostridium difficile VPI 10463. AF072473
prokMSA_id:14217 Clostridium difficile str. 79685. AF072474
prokMSA_id:70276 Clostridium difficile 
2.30.4.5.10 PPS.ANAEROBIUS_SUBGROUP 7 seqs
2.30.4.5.10.2797 OTU 6 seqs
prokMSA_id:75534 Swine manure RT-8A 
prokMSA_id:75733 Swine manure RT-23A 
prokMSA_id:76083 Swine manure 37-1 
prokMSA_id:76167 Swine manure RT-19A 
prokMSA_id:76533 Swine manure RT-13B 
prokMSA_id:76636 Swine manure RT-10B 
2.30.4.5.10.3179 OTU 1 seq
prokMSA_id:14228 Peptostreptococcus D1 str. D1
2.30.5 C.PURINOLYTICUM_GROUP 110 seqs
2.30.5.1 C.PURINOLYTICUM_SUBGROUP 55 seqs
2.30.5.1.1045 OTU 1 seq
prokMSA_id:34061 clone p-3402-SwA2 
2.30.5.1.1053 OTU 5 seqs
prokMSA_id:14238 Pseudoramibacter alactolyticus DSM 3980 . NONE
prokMSA_id:20221 Pseudoramibacter alactolyticus strain:9p-21
prokMSA_id:30675 Pseudoramibacter alactolyticus strain:146-3
prokMSA_id:46867 Pseudoramibacter alactolyticus strain:23263T
prokMSA_id:70847 Firmicutes sp. oral clone CK057 AF287778
2.30.5.1.1066 OTU 6 seqs
prokMSA_id:14235 limosum ATCC 8486
prokMSA_id:14240 callanderi str. FD DSM 3662
prokMSA_id:14241 Clostridium 'Butyribacterium methylotrophicum'
prokMSA_id:14242 limosum str. PM31
prokMSA_id:14243 limosum str. kist612
prokMSA_id:37240 clone 9D 
2.30.5.1.123 OTU 1 seq
prokMSA_id:14250 thermomarinus
2.30.5.1.154 OTU 1 seq
prokMSA_id:14257 Acetobacterium fimetarium str. Z-4290 DSM 8238
2.30.5.1.19 OTU 1 seq
prokMSA_id:49375 isolate RFLP 415 
2.30.5.1.28 OTU 1 seq
prokMSA_id:77821 clone:Rs-H81
2.30.5.1.289 OTU 1 seq
prokMSA_id:24041 low G+C Gram-positive MERTZ_21CM_91 
2.30.5.1.323 OTU 1 seq
prokMSA_id:14237 Acetobacterium woodii str. WB1 DSM 1030
2.30.5.1.331 OTU 1 seq
prokMSA_id:14239 clone ACE-18
2.30.5.1.423 OTU 1 seq
prokMSA_id:67841 low G+C Gram-positive clone 44a-B1-37 
2.30.5.1.472 OTU 1 seq
prokMSA_id:29789 isolate RFLP 194 
2.30.5.1.552 OTU 1 seq
prokMSA_id:33448 Thermohalobacter berrensis complete 
2.30.5.1.608 OTU 1 seq
prokMSA_id:17818 Banisveld landfill BVA18 
2.30.5.1.670 OTU 1 seq
prokMSA_id:31598 KF-Gitt2-16 
2.30.5.1.687 OTU 24 seqs
prokMSA_id:14230 Acetobacterium wieringae str. C DSM 1911
prokMSA_id:14232 Acetobacterium malicum str. MuME1 DSM 4132
prokMSA_id:14233 clone Aspo4
prokMSA_id:14234 Acetobacterium psammolithicum str. CN-E
prokMSA_id:14255 Acetobacterium carbinolicum str. WoProp 1 DSM 2925
prokMSA_id:27312 Banisveld landfill BVA53 
prokMSA_id:32798 epsilon 1055 
prokMSA_id:66182 clone IB-28
prokMSA_id:70260 Acetobacterium sp. HAAP-1 
prokMSA_id:75865 Acetobacterium sp. TM20-2 
prokMSA_id:77494 Acetobacterium sp. clone A4
prokMSA_id:79093 Acetobacterium sp. clone AKS29 
prokMSA_id:79098 Acetobacterium sp. clone AKS04 
prokMSA_id:79162 Acetobacterium sp. clone AKS17 
prokMSA_id:79235 Acetobacterium sp. clone ARC03 
prokMSA_id:79278 Acetobacterium sp. clone ARC01 
prokMSA_id:79314 Acetobacterium sp. clone ARC05 
prokMSA_id:79459 Acetobacterium sp. clone AKS70 
prokMSA_id:79463 Acetobacterium sp. clone AKS48 
prokMSA_id:79515 Acetobacterium sp. clone AKS02 
prokMSA_id:79527 Acetobacterium sp. clone AKS55 
prokMSA_id:79549 Acetobacterium sp. clone AKS42 
prokMSA_id:79573 Acetobacterium sp. clone ARC44 
prokMSA_id:82262 clone ZZ14C8 
2.30.5.1.707 OTU 1 seq
prokMSA_id:14231 Acetobacterium bakii str. Z-4391 DSM 8239
2.30.5.1.748 OTU 1 seq
prokMSA_id:14253 aggregans str. SR12 DSM 12183
2.30.5.1.764 OTU 2 seqs
prokMSA_id:14249 Acetobacterium paludosum str. Z-4092 DSM 8237
prokMSA_id:28584 Acetobacterium aff. tundrae DSM 9173 AJ297449
2.30.5.1.900 OTU 1 seq
prokMSA_id:28721 str. 77003 
2.30.5.1.923 OTU 2 seqs
prokMSA_id:14248 barkeri
prokMSA_id:14252 barkeri ATCC 25849
2.30.5.2 C.HYDROXYBENZOICUM_SUBGROUP 8 seqs
2.30.5.2.168 OTU 1 seq
prokMSA_id:14259 clone EKHO-5
2.30.5.2.247 OTU 1 seq
prokMSA_id:36368 species isolate Boom-7m-01
2.30.5.2.26 OTU 1 seq
prokMSA_id:51443 ZF2 
2.30.5.2.557 OTU 1 seq
prokMSA_id:82374 MTCE-T2 9H 
2.30.5.2.656 OTU 1 seq
prokMSA_id:34536 clone RFLP 62E 
2.30.5.2.668 OTU 1 seq
prokMSA_id:85712 Sedimentibacter sp. BRS2 
2.30.5.2.782 OTU 1 seq
prokMSA_id:14260 str. Boom-3m-09
2.30.5.2.88 OTU 1 seq
prokMSA_id:49196 Clostridium hongkongensis 
2.30.5.3 TSS.PRAEACUTA_SUBGROUP 15 seqs
2.30.5.3.140 OTU 1 seq
prokMSA_id:59568 Peptostreptococcus sp. oral clone EX153 
2.30.5.3.215 OTU 1 seq
prokMSA_id:14267 Clostridium filamentosum DSM 6645
2.30.5.3.218 OTU 1 seq
prokMSA_id:14269 Clostridium sp. str. PO
2.30.5.3.265 OTU 1 seq
prokMSA_id:70715 feedlot manure B37 
2.30.5.3.268 OTU 1 seq
prokMSA_id:35017 Acetanaerobacter thermotolerans 
2.30.5.3.436 OTU 1 seq
prokMSA_id:84656 Peptostreptococcaceae 19gly3 
2.30.5.3.604 OTU 1 seq
prokMSA_id:38592 feedlot manure B1 
2.30.5.3.619 OTU 1 seq
prokMSA_id:82015 MTCE-T2 1G 
2.30.5.3.645 OTU 1 seq
prokMSA_id:52451 Symbiobacterium sp. HN1 
2.30.5.3.699 OTU 1 seq
prokMSA_id:52800 Clostridium sp. 4 
2.30.5.3.736 OTU 4 seqs
prokMSA_id:14261 Tissierella praeacuta ATCC 25539
prokMSA_id:14262 Tissierella praeacuta NCTC 11158. X80832
prokMSA_id:14263 Clostridium hastiforme DSM 5675
prokMSA_id:14264 Clostridium hastiforme DSM 5675
2.30.5.3.799 OTU 1 seq
prokMSA_id:14266 Clostridium sp. str. BN II
2.30.5.4 HLC.KUNZII_SUBGROUP 2 seqs
2.30.5.4.254 OTU 1 seq
prokMSA_id:14270 Helcococcus kunzii NCFB 2900
2.30.5.4.823 OTU 1 seq
prokMSA_id:14271 Helcococcus 'CCUG 37441' str. s840-96-2 CCUG 37441
2.30.5.5 PPS.MICROS_SUBGROUP 6 seqs
2.30.5.5.224 OTU 6 seqs
prokMSA_id:81082 Finegoldia magna clone 1-9 
prokMSA_id:84501 Finegoldia magna strain CCUG 17636 
prokMSA_id:86757 Finegoldia magna rrnB operon 23S 5S tRNA-Ile complete AB1097
prokMSA_id:87725 Finegoldia magna rrnC operon complete AB109771
prokMSA_id:87735 Finegoldia magna operon 23S 5S complete AB109769
prokMSA_id:87971 Finegoldia magna rrnD operon complete AB109772
2.30.5.6 PPS.IVORII_SUBGROUP 4 seqs
2.30.5.6.259 OTU 1 seq
prokMSA_id:14275 Peptostreptococcus ivorii str. SBH093 DSM 10022
2.30.5.6.340 OTU 2 seqs
prokMSA_id:70045 feedlot manure B56 
prokMSA_id:71841 feedlot manure B90 
2.30.5.6.58 OTU 1 seq
prokMSA_id:68341 Peptostreptococcus sp. E3_32 E1 oral isolate 
2.30.5.7 PPS.INDOLICUS_SUBGROUP 13 seqs
2.30.5.7.1037 OTU 1 seq
prokMSA_id:81585 Finegoldia magna clone 1-68 
2.30.5.7.134 OTU 1 seq
prokMSA_id:84857 Peptoniphilus asaccharolyticus strain CCUG 9988 
2.30.5.7.17 OTU 1 seq
prokMSA_id:59528 Peptostreptococcus sp. oral clone P4PA_156 P4 
2.30.5.7.616 OTU 1 seq
prokMSA_id:83175 Peptoniphilus lacrimalis strain CCUG 31350 
2.30.5.7.801 OTU 1 seq
prokMSA_id:73616 feedlot manure B29 
2.30.5.7.837 OTU 1 seq
prokMSA_id:14277 Peptostreptococcus indolicus ATCC 29427
2.30.5.7.840 OTU 1 seq
prokMSA_id:14278 Peptostreptococcus harei str. SBH432 DSM 10020
2.30.5.7.847 OTU 1 seq
prokMSA_id:14280 Peptostreptococcus lacrimalis GIFU 7667
2.30.5.7.861 OTU 2 seqs
prokMSA_id:83803 Peptoniphilus sp. 2002-2300004 
prokMSA_id:86390 Peptoniphilus sp. 2002-38328 
2.30.5.7.870 OTU 1 seq
prokMSA_id:14281 Peptostreptococcus sp. str. 9succ1
2.30.5.7.907 OTU 2 seqs
prokMSA_id:14282 Peptostreptococcus S1 str. S1
prokMSA_id:86504 Peptoniphilus indolicus 
2.30.5.8 PPS.TETRADIUS_SUBGROUP 7 seqs
2.30.5.8.173 OTU 2 seqs
prokMSA_id:14289 Peptostreptococcus lactolyticus GIFU 8586
prokMSA_id:84198 Anaerococcus lactolyticus strain CCUG 31351 
2.30.5.8.393 OTU 1 seq
prokMSA_id:85470 Anaerococcus vaginalis strain CCUG 31349 
2.30.5.8.901 OTU 1 seq
prokMSA_id:14290 Peptostreptococcus octavius str. Davey 1 NCTC 9810
2.30.5.8.919 OTU 3 seqs
prokMSA_id:30062 Peptostreptococcus sp. clone KL-59-7-12 
prokMSA_id:84746 Anaerococcus prevotii strain CCUG 41932 
prokMSA_id:85988 Anaerococcus tetradius strain CCUG 46590 
2.30.6 ANAEROBIC_HALOPHILES 34 seqs
2.30.6.1 HLA.CHITINOVORANS_SUBGROUP 12 seqs
2.30.6.1.6 OTU 1 seq
prokMSA_id:14301 Halobacteroides halobius str. MD-1 DSM 5150
2.30.6.1.733 OTU 1 seq
prokMSA_id:14292 Haloanaerobacter lacunaris str. Z-7888 DSM 6640
2.30.6.1.754 OTU 1 seq
prokMSA_id:14295 Haloanaerobacter lacunaris str. Z-7888 DSM 6640
2.30.6.1.758 OTU 1 seq
prokMSA_id:14296 clone EKHO-16
2.30.6.1.759 OTU 1 seq
prokMSA_id:14299 Haloanaerobacter chitinovorans str. W5C8 OCM 229
2.30.6.1.786 OTU 2 seqs
prokMSA_id:69790 Orenia salinaria 
prokMSA_id:83871 low G+C Gram-positive isolate SB-31
2.30.6.1.887 OTU 2 seqs
prokMSA_id:14293 Haloanaerobacter salinarius str. SG3903
prokMSA_id:14294 Haloanaerobacter chitinovorans str. W5C8 OGC 229
2.30.6.1.947 OTU 1 seq
prokMSA_id:14300 Halobacteroides halobius str. MD-1 ATCC 35273
2.30.6.1.950 OTU 1 seq
prokMSA_id:14302 Orenia marismortui str. DY-1 DSM 5156
2.30.6.1.953 OTU 1 seq
prokMSA_id:14304 Orenia sivashensis str. Z-7191
2.30.6.2 ACH.ARABATICUM_SUBGROUP 2 seqs
2.30.6.2.958 OTU 1 seq
prokMSA_id:14307 Sporohalobacter lortetii str. MD-2 ATCC 35059
2.30.6.2.966 OTU 1 seq
prokMSA_id:14308 Acetohalobium arabaticum str. Z-7288 DSM 5501
2.30.6.3 HALOANAEROBIUM_GROUP 20 seqs
2.30.6.3.1 HTT.ORENII_SUBGROUP 2 seqs
2.30.6.3.1.968 OTU 1 seq
prokMSA_id:14309 Halothermothrix orenii str. H168 OCM 544
2.30.6.3.1.991 OTU 1 seq
prokMSA_id:14310 clone EKHO-9
2.30.6.3.2 HCL.CELLULOLYTICA_SUBGROUP 2 seqs
2.30.6.3.2.1001 OTU 1 seq
prokMSA_id:14311 Halocella cellulolytica str. Z-10151 DSM 7362
2.30.6.3.2.1002 OTU 1 seq
prokMSA_id:14312 clone EKHO-1
2.30.6.3.3 HAN.PRAEVALENS_SUBGROUP 16 seqs
2.30.6.3.3.1003 OTU 1 seq
prokMSA_id:14313 Haloanaerobium salsugo str. VS-752 ATCC 51327
2.30.6.3.3.1006 OTU 1 seq
prokMSA_id:14314 Haloanaerobium lacuroseus str. H200 DSM 10165
2.30.6.3.3.1043 OTU 1 seq
prokMSA_id:14323 Haloanaerobium saccharolyticum subsp. senegalense str. H150
2.30.6.3.3.1055 OTU 1 seq
prokMSA_id:14328 Haloanaerobium saccharolyticum subsp. saccharolyticum str. Z
2.30.6.3.3.197 OTU 8 seqs
prokMSA_id:14315 Haloanaerobium acetoethylicum str. EIGI DSM 3532
prokMSA_id:14316 Haloanaerobium acetoethylicum str. EIGI DSM 3532
prokMSA_id:14317 Haloanaerobium acetoethylicum. U86448
prokMSA_id:14319 Haloanaerobium praevalens DSM 2228 . AB022034
prokMSA_id:14321 Haloanaerobium praevalens str. strain S-8 from the can of Sw
prokMSA_id:14324 Haloanaerobium saccharolyticum subsp. senegalense DSM 7379
prokMSA_id:14326 Haloanaerobium saccharolyticum subsp. saccharolyticum str. Z
prokMSA_id:49598 Halanaerobium sp. KT-2/3-3 
2.30.6.3.3.803 OTU 4 seqs
prokMSA_id:23398 Halanaerobium sp. KT-8-13 
prokMSA_id:23710 Red Sea KT-2K23 
prokMSA_id:24600 Red Sea KT-2K28 
prokMSA_id:49272 Halanaerobium sp. S5L4 
2.30.7 BACILLUS-LACTOBACILLUS-STREPTOCOCCUS_SUBDIVISION 2633 seqs
2.30.7.1 ALICYCLOBACILLUS_GROUP 45 seqs
2.30.7.1.3259 OTU 1 seq
prokMSA_id:44616 Alicyclobacillus herbarius 
2.30.7.1.3260 OTU 1 seq
prokMSA_id:29451 Sulfobacillus sp. strain ML1/10-22
2.30.7.1.3271 OTU 2 seqs
prokMSA_id:14341 Sulfobacillus thermosulfidooxidans
prokMSA_id:94490 Sulfobacillus thermosulfidooxidans AB089844
2.30.7.1.3352 OTU 2 seqs
prokMSA_id:23447 Alicyclobacillus sp. TA 67T strain:TA 67T
prokMSA_id:58498 Alicyclobacillus acidiphilus AB076660
2.30.7.1.3368 OTU 1 seq
prokMSA_id:58325 Gram-positive iron-oxidizing acidophile Y0010 
2.30.7.1.3376 OTU 1 seq
prokMSA_id:25597 Alicyclobacillus acidoterrestris strain:DSM 2498
2.30.7.1.3400 OTU 1 seq
prokMSA_id:26544 Sulfobacillus montserratensis strain L15 
2.30.7.1.3405 OTU 5 seqs
prokMSA_id:14344 Pasteuria penetrans str. P-20; P-100
prokMSA_id:38647 Pasteuria penetrans AF375881
prokMSA_id:62225 Pasteuria penetrans strain 98-35 ; and tRNA-Ala complete AY1
prokMSA_id:68451 Pasteuria sp. clone NCf4 
prokMSA_id:68454 Pasteuria sp. clone Nf3 AY081917
2.30.7.1.3461 OTU 1 seq
prokMSA_id:25382 Sulfobacillus sp. Fras1 
2.30.7.1.3487 OTU 4 seqs
prokMSA_id:14345 Alicyclobacillus acidoterrestris DSM 3923
prokMSA_id:32908 Alicyclobacillus acidocaldarius strain:DSM 451 AB059672
prokMSA_id:34592 Alicyclobacillus acidocaldarius strain:DSM 452 AB059673
prokMSA_id:55934 Alicyclobacillus acidocaldarius strain DSM 446
2.30.7.1.3518 OTU 1 seq
prokMSA_id:40294 Sulfobacillus sp. strain ML1/10-19
2.30.7.1.3578 OTU 2 seqs
prokMSA_id:16300 GSM 
prokMSA_id:24598 Alicyclobacillus sp. AGC-2 
2.30.7.1.3597 OTU 5 seqs
prokMSA_id:14346 Alicyclobacillus cycloheptanicus
prokMSA_id:21935 Alicyclobacillus cycloheptanicus AB042059
prokMSA_id:40466 Alicyclobacillus cycloheptanicus strain:DSM 4007
prokMSA_id:45506 Alicyclobacillus cycloheptanicus strain:DSM 4005 AB059680
prokMSA_id:63190 Bacillus cycloheptanicus 
2.30.7.1.3657 OTU 5 seqs
prokMSA_id:33263 Sulfobacillus yellowstonensis strain YTF-1 AY007665
prokMSA_id:58331 Sulfobacillus sp. GG6/1 
prokMSA_id:64391 Sulfobacillus sp. NC 
prokMSA_id:66335 Sulfobacillus sp. YTF3 
prokMSA_id:95123 Sulfobacillus acidophilus AB089842
2.30.7.1.3674 OTU 1 seq
prokMSA_id:51329 Gram-positive iron-oxidizing acidophile SLC66 
2.30.7.1.3694 OTU 1 seq
prokMSA_id:29823 Mixotrophic iron-oxidizing 
2.30.7.1.3806 OTU 1 seq
prokMSA_id:73543 Sulfobacillus ambivalens strain RIV14 
2.30.7.1.3832 OTU 1 seq
prokMSA_id:41279 Sulfobacillus sp. P3-5 
2.30.7.1.3853 OTU 1 seq
prokMSA_id:14343 symbiont of Daphnia sp
2.30.7.1.3852 OTU 1 seq
prokMSA_id:14342 Sulfobacillus thermosulfidooxidans str. BC1
2.30.7.1.3862 OTU 1 seq
prokMSA_id:17688 Pasteuria sp. NA 
2.30.7.1.3864 OTU 1 seq
prokMSA_id:14347 Alicyclobacillus acidocaldarius str. TDBrock 115-8 ATCC 4303
2.30.7.1.3897 OTU 3 seqs
prokMSA_id:14351 gram neg iron oxidizing related to isolates BC and ALV clone
prokMSA_id:21716 BU138 
prokMSA_id:38687 Sulfobacillus sp. K55 
2.30.7.1.3915 OTU 2 seqs
prokMSA_id:14331 Bacillus tusciae DSM 2912
prokMSA_id:85455 Bacillus tusciae 
2.30.7.2 B.SCHLEGELII 1 seq
2.30.7.2.3612 OTU 1 seq
prokMSA_id:83619 Bacillus schlegelii 
2.30.7.4 PAE.POLYMYXA_GROUP 213 seqs
2.30.7.4.1 PAE.MACQUARIENSIS_SUBGROUP 136 seqs
2.30.7.4.1.3274 OTU 1 seq
prokMSA_id:73761 Paenibacillus sp. ikaite c7 isolate ikaite c7
2.30.7.4.1.3310 OTU 1 seq
prokMSA_id:14368 Paenibacillus sp. str. vortex
2.30.7.4.1.3325 OTU 1 seq
prokMSA_id:18657 Paenibacillus sp. CM1 
2.30.7.4.1.3335 OTU 1 seq
prokMSA_id:38089 Paenibacillus sp. LMG 20244 strain LMG 20244
2.30.7.4.1.3390 OTU 3 seqs
prokMSA_id:14360 Paenibacillus illinoisensis str. 14 NRRL NRS-1356
prokMSA_id:77327 Paenibacillus sp. SAFN-035 
prokMSA_id:78185 Paenibacillus illinoisensis 
2.30.7.4.1.3413 OTU 2 seqs
prokMSA_id:74125 Paenibacillus sp. 7-5 
prokMSA_id:79325 clone AB04 AJ539171
2.30.7.4.1.3415 OTU 2 seqs
prokMSA_id:84099 Paenibacillus nematophilus strain NEM1a 
prokMSA_id:85675 Paenibacillus nematophilus strain NEM1b 
2.30.7.4.1.3549 OTU 1 seq
prokMSA_id:14382 clone M45
2.30.7.4.1.3559 OTU 6 seqs
prokMSA_id:14383 Paenibacillus sp. str. RS19
prokMSA_id:21436 Paenibacillus sp. TRO4 isolate TRO4 =LMG 19081
prokMSA_id:42642 Paenibacillus sp. isolate P15-9
prokMSA_id:46666 Paenibacillus turicensis clone B3 complete 
prokMSA_id:47416 Paenibacillus turicensis clone A3a complete 
prokMSA_id:47969 Paenibacillus turicensis clone B2 complete 
2.30.7.4.1.3564 OTU 1 seq
prokMSA_id:18675 Bacillus sp. USC14 complete 
2.30.7.4.1.3565 OTU 3 seqs
prokMSA_id:48149 Paenibacillus stellifer strain IS
prokMSA_id:83547 Paenibacillus sp. 2002-56410 
prokMSA_id:85150 Paenibacillus stellifer strain IS-5 AY099471
2.30.7.4.1.3577 OTU 22 seqs
prokMSA_id:14359 Paenibacillus amylolyticus NRRL NRS-290
prokMSA_id:14362 Paenibacillus macquariensis str. 673 DSM 2 . X57305
prokMSA_id:14363 Bacillus longisporus LMG 13275. AJ223991
prokMSA_id:14365 Paenibacillus macquariensis str. 673 NCTC 10419 . X60625
prokMSA_id:19669 Paenibacillus sp. V2 
prokMSA_id:21862 Low G+C Gram-positive D-St1-3 
prokMSA_id:27118 Bacillus sp. FE1 
prokMSA_id:40008 Bacillus sp. BE1 
prokMSA_id:51524 Low G+C Gram-positive S-St1-6A 
prokMSA_id:55541 Paenibacillus sp. p22D 
prokMSA_id:72202 Paenibacillus amylolyticus 
prokMSA_id:77701 Paenibacillus amylolyticus AB073190
prokMSA_id:78079 Paenibacillus pabuli 
prokMSA_id:78345 Paenibacillus macquariensis AB073193
prokMSA_id:78619 Paenibacillus sp. 2216.15.16 
prokMSA_id:84855 Bacillus sp. 'Smarlab BioMol-2301285' AY230772
prokMSA_id:90362 Glacier FJS42 AY315170
prokMSA_id:91146 Paenibacillus sp. CC-SB818D1 AY337581
prokMSA_id:91452 H17 AY345554
prokMSA_id:91692 clone LWSR-64 AY345535
prokMSA_id:92017 Paenibacillus amylolyticus strain:KT5501 AB115960
prokMSA_id:96930 Paenibacillus sp. NAB13 AY395017
2.30.7.4.1.3608 OTU 1 seq
prokMSA_id:49631 Paenibacillus turicensis clone B1 complete 
2.30.7.4.1.3630 OTU 1 seq
prokMSA_id:66508 clone cvf65054 
2.30.7.4.1.3651 OTU 68 seqs
prokMSA_id:14375 Paenibacillus sp. str. KM8
prokMSA_id:14376 Paenibacillus sp. str. KK19
prokMSA_id:14377 Paenibacillus sp. str. KK20
prokMSA_id:14378 Paenibacillus sp. str. KN24
prokMSA_id:14379 Paenibacillus sp. str. KN25
prokMSA_id:14380 Paenibacillus sp. str. HM26
prokMSA_id:14381 Paenibacillus sp. str. HM31
prokMSA_id:14384 Paenibacillus sp. str. TOD45
prokMSA_id:14428 Paenibacillus polymyxa IAM 13419
prokMSA_id:14429 Paenibacillus burgondia str. B2
prokMSA_id:14431 Paenibacillus polymyxa str. PMD230. AJ223988
prokMSA_id:14432 Paenibacillus polymyxa str. CF43. AJ223989
prokMSA_id:16360 Paenibacillus jamilae strain CECT 5266
prokMSA_id:20958 Paenibacillus kribbensis 
prokMSA_id:22251 Paenibacillus taejonensis 
prokMSA_id:27285 Paenibacillus sp. 172 
prokMSA_id:28853 Paenibacillus sp. isolate P14-7
prokMSA_id:33249 T107 isolate T107
prokMSA_id:38958 Paenibacillus polymyxa strain DSM 36T
prokMSA_id:42808 Paenibacillus polymyxa 
prokMSA_id:44105 Paenibacillus peoriae strain DSM 8320T
prokMSA_id:50840 Paenibacillus sp. isolate P22-9
prokMSA_id:58395 Paenibacillus sp. isolate P51-3
prokMSA_id:64883 Paenibacillus polymyxa strain GBR-1 
prokMSA_id:68756 Glacial ice G50-L2 
prokMSA_id:71025 Paenibacillus fujiensis 
prokMSA_id:71723 Paenibacillus sp. 61724 
prokMSA_id:77277 Earthworm gut MH72 
prokMSA_id:77429 Paeniacillus sp. SAFN-016 
prokMSA_id:77819 Paenibacillus macerans 
prokMSA_id:78234 Paenibacillus peoriae AB073186
prokMSA_id:78235 Paenibacillus chibensis AB073194
prokMSA_id:78279 Paenibacillus borealis 
prokMSA_id:78298 Paenibacillus glucanolyticus 
prokMSA_id:80385 B.circulans strain WSBC 20030
prokMSA_id:80571 B.circulans strain 1-77
prokMSA_id:82473 Paenibacillus sp. HSCC 1657 
prokMSA_id:84469 Paenibacillus sp. 436-1 
prokMSA_id:84777 Paenibacillus lactis strain MB 1871 AY257868
prokMSA_id:85775 Paenibacillus polymyxa 
prokMSA_id:89987 Paenibacillus polymyxa strain WY110 AY302439
prokMSA_id:89996 Paenibacillus elgii strain SD17 AY090110
prokMSA_id:90699 Paenibacillus polymyxa BS04 AY302187
prokMSA_id:92059 Paenibacillus polymyxa strain KCTC3717 AY359637
prokMSA_id:92097 Paenibacillus polymyxa strain GBR-501 AY359628
prokMSA_id:92100 Paenibacillus polymyxa strain GBR-11 AY359619
prokMSA_id:92110 Paenibacillus polymyxa strain GBR-462 AY359621
prokMSA_id:92170 Paenibacillus polymyxa strain GBR-515 AY359629
prokMSA_id:92191 Paenibacillus polymyxa strain GBR-602 AY359631
prokMSA_id:92246 Paenibacillus polymyxa strain GBR-485 AY359627
prokMSA_id:92257 Paenibacillus polymyxa strain KCTC1761 AY359634
prokMSA_id:92293 Paenibacillus polymyxa strain GBR-180 AY359616
prokMSA_id:92370 Paenibacillus polymyxa strain GBR-478 AY359626
prokMSA_id:92405 Paenibacillus polymyxa strain GBR-447 AY359620
prokMSA_id:92521 Paenibacillus polymyxa strain GBR-192 AY359617
prokMSA_id:92572 Paenibacillus polymyxa strain GBR-27 AY359615
prokMSA_id:92583 Paenibacillus polymyxa strain KCTC3554 AY359635
prokMSA_id:92624 Paenibacillus polymyxa strain GBR-477 AY359625
prokMSA_id:92641 Paenibacillus polymyxa strain KCTC1663 AY359633
prokMSA_id:92844 Paenibacillus polymyxa strain KCTC3627 AY359636
prokMSA_id:92846 Paenibacillus polymyxa strain GBR-472 AY359624
prokMSA_id:92852 Paenibacillus polymyxa strain GBR-540 AY359630
prokMSA_id:92866 Paenibacillus polymyxa strain GBR-464 AY359622
prokMSA_id:93032 Paenibacillus polymyxa strain GBR-465 AY359623
prokMSA_id:93129 Paenibacillus polymyxa strain GBR-603 AY359632
prokMSA_id:93130 Paenibacillus polymyxa strain GBR-325 AY359618
prokMSA_id:94822 Paenibacillus abekawaensis strain:MG1 AB119649
prokMSA_id:94987 Paenibacillus sp. g2 AY373363
2.30.7.4.1.3721 OTU 1 seq
prokMSA_id:39149 Paenibacillus sp. TB9 
2.30.7.4.1.3729 OTU 1 seq
prokMSA_id:51119 Paenibacillus sp. SM-XY60 
2.30.7.4.1.3751 OTU 3 seqs
prokMSA_id:14415 Paenibacillus curdlanolyticus str. YK9 IFO 15724 . D78466
prokMSA_id:27161 sp. clone 1200-12
prokMSA_id:78004 Paenibacillus curdlanolyticus AB073202
2.30.7.4.1.3811 OTU 2 seqs
prokMSA_id:67648 Paenibacillus sp. R-11600 
prokMSA_id:71618 LMG 18437 strain LMG 18437
2.30.7.4.1.3824 OTU 6 seqs
prokMSA_id:14367 Paenibacillus campinasensis str. 324 KCTC 0364BP
prokMSA_id:69797 Paenibacillus sp. S39 
prokMSA_id:71978 Paenibacillus sp. AG430 
prokMSA_id:72049 Paenibacillus sp. 38-2 
prokMSA_id:77903 Paenibacillus campinasensis 
prokMSA_id:85263 Paenibacillus sp. A11 
2.30.7.4.1.3876 OTU 1 seq
prokMSA_id:22513 Paenibacillus sp. G296-78 
2.30.7.4.1.3905 OTU 1 seq
prokMSA_id:22302 Paenibacillus turicensis clone A2 complete 
2.30.7.4.1.3911 OTU 6 seqs
prokMSA_id:14357 Paenibacillus lautus NRRL NRS-666 . D78473
prokMSA_id:14369 Paenibacillus lautus CCM 3892. D78472
prokMSA_id:50444 Paenibacillus sp. SB45-2B 
prokMSA_id:77752 Paenibacillus lautus 
prokMSA_id:78091 Paenibacillus lautus strain C2
prokMSA_id:83727 Paenibacillus sp. 6495m-C2 isolate 6495m-C2
2.30.7.4.1.3910 OTU 1 seq
prokMSA_id:40899 Paenibacillus sp. isolate A-234
2.30.7.4.2 PAE.VALIDUS_SUBGROUP 64 seqs
2.30.7.4.2.3247 OTU 1 seq
prokMSA_id:26683 Paenibacillus sp. DSM 34 strain DSM 34
2.30.7.4.2.3248 OTU 5 seqs
prokMSA_id:14409 Bacillus viscosus ATCC 51155
prokMSA_id:35596 Bacillus ehimensis 
prokMSA_id:42610 Paenibacillus koreensis 
prokMSA_id:63561 Bacillus ehimensis strain KCTC3747 
prokMSA_id:67227 Bacillus sp. NK395 
2.30.7.4.2.3254 OTU 1 seq
prokMSA_id:44415 Paenibacillus sp. DSM 1482 strain DSM 1482
2.30.7.4.2.3257 OTU 1 seq
prokMSA_id:70633 synthetic wastewater tmbr15-20 complete 
2.30.7.4.2.3264 OTU 1 seq
prokMSA_id:54854 Paenibacillus sp. NBT 
2.30.7.4.2.3312 OTU 3 seqs
prokMSA_id:71863 synthetic wastewater tmbr11-29 complete 
prokMSA_id:71897 synthetic wastewater tmbr11-6 complete 
prokMSA_id:98371 Paenibacillus sp. R-7652 AY382189
2.30.7.4.2.3322 OTU 8 seqs
prokMSA_id:35842 Paenibacillus naphthalenovorans strain PR-N5 
prokMSA_id:51767 Paenibacillus naphthalenovorans strain PR-N1 
prokMSA_id:71096 Paenibacillus naphthalenovorans strain PS-N1 AF353703
prokMSA_id:73273 Paenibacillus naphthalenovorans strain PR-N16 AF353690
prokMSA_id:81244 Paenibacillus sp. YK20 
prokMSA_id:81558 Paenibacillus sp. YK5 AB091334
prokMSA_id:81627 Paenibacillus sp. YK19 
prokMSA_id:82278 Paenibacillus sp. YK12 
2.30.7.4.2.3329 OTU 4 seqs
prokMSA_id:49008 Paenibacillus larvae subsp. pulvifaciens AY030080
prokMSA_id:49027 Paenibacillus larvae subsp. larvae 
prokMSA_id:77692 Paenibacillus larvae 
prokMSA_id:77802 Paenibacillus larvae 
2.30.7.4.2.3409 OTU 1 seq
prokMSA_id:14402 Paenibacillus alginolyticus str. 3 DSM 5050
2.30.7.4.2.3450 OTU 1 seq
prokMSA_id:28165 Paenibacillus alvei strain DSM 29T
2.30.7.4.2.3465 OTU 1 seq
prokMSA_id:14404 Bacillus edaphicus str. T7 VKPM B-7517
2.30.7.4.2.3468 OTU 1 seq
prokMSA_id:14405 Bacillus mucilaginosus str. 1480D VKPM B-7519
2.30.7.4.2.3505 OTU 8 seqs
prokMSA_id:14406 Paenibacillus validus DSM 3037 . S73541
prokMSA_id:14408 Paenibacillus validus DSM 3037 . D78320
prokMSA_id:27850 Bacillus sp
prokMSA_id:37347 Paenibacillus validus strain DS-N1 AF353676
prokMSA_id:38639 Bacillus sp
prokMSA_id:71092 Paenibacillus validus strain PR-P9 AF353697
prokMSA_id:74208 Paenibacillus validus strain PR-P1 AF353695
prokMSA_id:78225 Paenibacillus validus AB073203
2.30.7.4.2.3525 OTU 2 seqs
prokMSA_id:40413 Bacillus chitinolyticus 
prokMSA_id:73805 Paenibacillus cf. polymyxa 
2.30.7.4.2.3530 OTU 1 seq
prokMSA_id:37854 Paenibacillus agardevorans strain DSM 1355
2.30.7.4.2.3535 OTU 2 seqs
prokMSA_id:32167 firmicute clone SM1E07 AF445685
prokMSA_id:75026 earthworm intestine clone wi79 
2.30.7.4.2.3567 OTU 1 seq
prokMSA_id:14390 Paenibacillus sp. str. T-168
2.30.7.4.2.3568 OTU 1 seq
prokMSA_id:14391 Paenibacillus sp. str. C-168
2.30.7.4.2.3584 OTU 1 seq
prokMSA_id:14396 DA116 
2.30.7.4.2.3591 OTU 1 seq
prokMSA_id:43825 Paenibacillus sp. DS-1 
2.30.7.4.2.3595 OTU 1 seq
prokMSA_id:84807 Paenibacillus sp. MB 2039 
2.30.7.4.2.3708 OTU 1 seq
prokMSA_id:72157 Paenibacillus sp. 19508 
2.30.7.4.2.3716 OTU 1 seq
prokMSA_id:14413 Thermobacillus xylanolyticus str. XE
2.30.7.4.2.3720 OTU 1 seq
prokMSA_id:17949 Paenibacillus velasolus 
2.30.7.4.2.3731 OTU 1 seq
prokMSA_id:48429 from anoxic bulk soil clone BSV79
2.30.7.4.2.3748 OTU 1 seq
prokMSA_id:28736 Paenibacillus sp. AP-20 
2.30.7.4.2.3787 OTU 1 seq
prokMSA_id:50002 from anoxic bulk soil clone BSV44
2.30.7.4.2.3814 OTU 1 seq
prokMSA_id:39587 Agricultural soil isolate SI-4 
2.30.7.4.2.3819 OTU 1 seq
prokMSA_id:31440 Paenibacillus sp. DSM 1481 strain DSM 1481
2.30.7.4.2.3857 OTU 2 seqs
prokMSA_id:43033 SCBP-S17 
prokMSA_id:73768 
2.30.7.4.2.3877 OTU 2 seqs
prokMSA_id:14386 Paenibacillus lentimorbus ATCC 14707
prokMSA_id:77770 Paenibacillus lentimorbus 
2.30.7.4.2.3891 OTU 1 seq
prokMSA_id:27231 Paenibacillus sp. DSM 1474 strain DSM 1474
2.30.7.4.2.3901 OTU 1 seq
prokMSA_id:77934 Paenibacillus alginolyticus 
2.30.7.4.2.3922 OTU 4 seqs
prokMSA_id:14387 Paenibacillus popilliae ATCC 14706 . AF071859
prokMSA_id:14395 Paenibacillus popilliae NRRL B-4081
prokMSA_id:17491 Paenibacillus thiaminolyticus strain DSM 7262T
prokMSA_id:78039 Paenibacillus popilliae 
2.30.7.4.3 PAE.ALVEI_SUBGROUP 1 seq
2.30.7.4.3.3437 OTU 1 seq
prokMSA_id:77745 Paenibacillus apiarius 
2.30.7.4.4 PAE.MACERANS_SUBGROUP 1 seq
2.30.7.4.4.3263 OTU 1 seq
prokMSA_id:34851 Paenibacillus sp. EE17 
2.30.7.4.5 PAE.AZOTOFIXANS_SUBGROUP 1 seq
2.30.7.4.5.3735 OTU 1 seq
prokMSA_id:14423 Paenibacillus azotofixans DSM 1735
2.30.7.4.6 PAE.POLYMYXA_SUBGROUP 10 seqs
2.30.7.4.6.3360 OTU 1 seq
prokMSA_id:73496 Paenibacillus sp. LMG 20245 strain LMG 20245
2.30.7.4.6.3428 OTU 1 seq
prokMSA_id:39053 Pietermaritzburg Y14-1 
2.30.7.4.6.3445 OTU 2 seqs
prokMSA_id:16553 str. 31295 
prokMSA_id:28024 str. 31293 AF227859
2.30.7.4.6.3570 OTU 2 seqs
prokMSA_id:62679 low G+C Gram-positive clone ML635J-5 
prokMSA_id:63836 Bacillus sp. clone ML1228J-1 
2.30.7.4.6.3711 OTU 1 seq
prokMSA_id:27158 Paenibacillus hongkongensis 
2.30.7.4.6.3745 OTU 1 seq
prokMSA_id:62685 low G+C Gram-positive clone ML635J-45 
2.30.7.4.6.3766 OTU 1 seq
prokMSA_id:14430 Bacillus GL1 str. GL1
2.30.7.4.6.3793 OTU 1 seq
prokMSA_id:34044 Pietermaritzburg Y14-3 
2.30.7.5 BB.BREVIS_GROUP 34 seqs
2.30.7.5.3299 OTU 11 seqs
prokMSA_id:14441 Brevibacillus borstelensis NRRL NRS-818
prokMSA_id:14444 Brevibacillus reuszeri NRRL NRS-1206 . D78464
prokMSA_id:25731 Brevibacillus sp. Riau 
prokMSA_id:48767 Brevibacterium sp. BN53-1 
prokMSA_id:63084 Brevibacillus borstelensis strain LMG 15536 AF378230
prokMSA_id:67396 Brevibacillus sp. AV-Pb 
prokMSA_id:71869 Brevibacillus sp. HC6 
prokMSA_id:72424 Brevibacillus agri strain LMG 18172 AF378233
prokMSA_id:91137 Brevibacillus borstelensis strain:M63 AB116134
prokMSA_id:94939 Brevibacillus borstelensis strain R-7201 AY373322
prokMSA_id:97889 Brevibacillus sp. R-6469 AY397767
2.30.7.5.3316 OTU 2 seqs
prokMSA_id:14435 Brevibacillus thermoruber str. BT2 DSM 7064 . Z26921
prokMSA_id:20029 Brevibacillus sp. SL8 
2.30.7.5.3625 OTU 1 seq
prokMSA_id:22135 Metal-contaminated soil clone K20-03 
2.30.7.5.3641 OTU 1 seq
prokMSA_id:38999 Brevibacillus sp. MN 47.2a isolate MN 47.2a
2.30.7.5.3664 OTU 1 seq
prokMSA_id:32738 SBR1071 
2.30.7.5.3746 OTU 1 seq
prokMSA_id:30464 SBR2013 
2.30.7.5.3775 OTU 1 seq
prokMSA_id:14438 clone K20-27
2.30.7.5.3797 OTU 1 seq
prokMSA_id:14445 Brevibacillus laterosporus IAM 12455
2.30.7.5.3884 OTU 1 seq
prokMSA_id:40165 Brevibacillus sp. MC-Z complete 
2.30.7.5.3888 OTU 1 seq
prokMSA_id:70010 TM7LH20 
2.30.7.5.3917 OTU 13 seqs
prokMSA_id:14436 Brevibacillus agri NRRL NRS-1689
prokMSA_id:14442 Brevibacillus parabrevis IFO 12334
prokMSA_id:14449 Brevibacillus choshinensis str. HPD52. D78459
prokMSA_id:14451 Brevibacillus agri NRRL NRS-1219
prokMSA_id:27343 Brevibacillus agri complete strain:MC-C1
prokMSA_id:34619 Brevibacillus sp. clone KL-13-4-4 
prokMSA_id:38327 Brevibacillus sp. clone KL-13-4-10 
prokMSA_id:44838 Brevibacillus agri strain:M1-5
prokMSA_id:55876 Brevibacillus sp. EK-287 
prokMSA_id:60320 Brevibacillus sp. YT-658 
prokMSA_id:72419 Brevibacillus invocatus strain LMG 18167 
prokMSA_id:79457 Brevibacillus brevis 
prokMSA_id:82855 Brevibacillus sp. R-12868 
2.30.7.6 AB.ANEURINILYTICUS_GROUP 26 seqs
2.30.7.6.319 OTU 1 seq
prokMSA_id:14469 Ammoniphilus oxalaticus str. RAOx-FF
2.30.7.6.3282 OTU 2 seqs
prokMSA_id:14465 Oxalophagus oxalicus str. Alt Ox1 DSM 5503
prokMSA_id:14466 Oxalophagus oxalicus str. Alt Ox1 DSM 5503
2.30.7.6.3407 OTU 1 seq
prokMSA_id:14462 Thermoactinomyces sacchari ATCC 27349
2.30.7.6.3539 OTU 3 seqs
prokMSA_id:22272 Thermoactinomyces sacchari KCTC 9790 complete AF138737
prokMSA_id:25830 Thermoactinomyces thalpophilus KCTC 9789 complete AF138738
prokMSA_id:70190 Thermoactinomyces thalpophilus 
2.30.7.6.3619 OTU 4 seqs
prokMSA_id:14463 Thermoactinomyces vulgaris ATCC 43649
prokMSA_id:43719 Thermoactinomyces albus 
prokMSA_id:63755 Thermoactinomyces vulgaris strain RVH210302 
prokMSA_id:66466 clone cvf77073 
2.30.7.6.3640 OTU 2 seqs
prokMSA_id:26206 Thermoactinomyces putidus KCTC 3666 complete 
prokMSA_id:33006 Thermoactinomyces putidus 
2.30.7.6.3668 OTU 1 seq
prokMSA_id:22975 Thermoactinomyces peptonophilus KCTC 9740 complete 
2.30.7.6.3677 OTU 5 seqs
prokMSA_id:14454 Aneurinibacillus migulanus ATCC 9999
prokMSA_id:14455 Bacillus acidovorans ATCC 51159
prokMSA_id:14456 Aneurinibacillus migulanus DSM 2895
prokMSA_id:14457 Aneurinibacillus aneurinilyticus ATCC 12856
prokMSA_id:14458 Aneurinibacillus aneurinilyticus DSM 5562
2.30.7.6.3790 OTU 5 seqs
prokMSA_id:14460 Aneurinibacillus thermoaerophilus str. L420-91 DSM 10154
prokMSA_id:14461 Aneurinibacillus thermoaerophilus DSM 10155
prokMSA_id:38737 Bacillus sp. HC5 
prokMSA_id:71633 synthetic wastewater tmbr15-26 complete 
prokMSA_id:72629 synthetic wastewater tmbr15-12 complete AF309813
2.30.7.6.3828 OTU 1 seq
prokMSA_id:51632 Aneurinibacillus sp. DB4 
2.30.7.6.625 OTU 1 seq
prokMSA_id:14467 Ammoniphilus oxalivorans str. RAOx-FS DSM 11537
2.30.7.7 B.HORTI_SUBGROUP 3 seqs
2.30.7.7.3427 OTU 1 seq
prokMSA_id:14473 str. HTA454
2.30.7.7.3867 OTU 2 seqs
prokMSA_id:14471 Bacillus horti str. K13 JCM 9943
prokMSA_id:14472 Bacillus 5215 str. 5215
2.30.7.8 MRC.HALOPHILUS_SUBGROUP 4 seqs
2.30.7.8.3444 OTU 1 seq
prokMSA_id:14476 str. MBIC3303
2.30.7.8.3442 OTU 1 seq
prokMSA_id:14475 Marinococcus halophilus DSM 20408
2.30.7.8.3752 OTU 1 seq
prokMSA_id:14474 Marinococcus halophilus NCIMB 2178
2.30.7.8.3925 OTU 1 seq
prokMSA_id:82109 Marinococcus sp. 3019cM 
2.30.7.9 SPOROLACTOBACILLUS_GROUP 132 seqs
2.30.7.9.1 SPL.INULINUS_SUBGROUP 14 seqs
2.30.7.9.1.3324 OTU 10 seqs
prokMSA_id:14478 Sporolactobacillus laevis str. M-103 IAM 12387
prokMSA_id:14479 Sporolactobacillus racemicus str. M-116 IAM 14264
prokMSA_id:14480 Bacillus myxolacticus str. M-105 IAM 12326
prokMSA_id:14481 Sporolactobacillus racemicus str. M-17 IAM 12396
prokMSA_id:14482 Sporolactobacillus laevis str. M-114 IAM 12388
prokMSA_id:14483 Bacillus laevolacticus str. M-1 IAM 12322
prokMSA_id:14484 Sporolactobacillus laevis str. M-18 IAM 14263
prokMSA_id:14486 Bacillus laevolacticus str. M-8 IAM 12321
prokMSA_id:14488 Bacillus laevolacticus str. M-14 IAM 12318
prokMSA_id:14491 Sporolactobacillus racemicus str. M-16 IAM 12395
2.30.7.9.1.3882 OTU 4 seqs
prokMSA_id:14477 Sporolactobacillus inulinus JCM 6014
prokMSA_id:14489 Sporolactobacillus racemicus str. M-86 IAM 12384
prokMSA_id:14490 Sporolactobacillus inulinus NRIC 1134
prokMSA_id:79523 Sporolactobacillus inulinus 
2.30.7.9.2 B.RACEMILACTICUS 1 seq
2.30.7.9.2.3520 OTU 1 seq
prokMSA_id:14492 Bacillus racemilacticus str. M-5 IAM 12319
2.30.7.9.3 B.ALCALOPHILUS_SUBGROUP 117 seqs
2.30.7.9.3.3321 OTU 2 seqs
prokMSA_id:16416 sp. Lake Natron isolate 103NT4
prokMSA_id:26833 sp. Lake Elmenteita isolate WE1
2.30.7.9.3.3365 OTU 1 seq
prokMSA_id:63834 Bacillus sp. clone ML615J-19 
2.30.7.9.3.3399 OTU 1 seq
prokMSA_id:36300 sp. Lake Natron isolate 105NT4
2.30.7.9.3.3419 OTU 1 seq
prokMSA_id:86553 Bacillus sp. KMM 3737 
2.30.7.9.3.3424 OTU 1 seq
prokMSA_id:76003 clone Gitt-KF-76
2.30.7.9.3.3440 OTU 1 seq
prokMSA_id:16919 Bacillus sp. JMM-4 
2.30.7.9.3.3443 OTU 1 seq
prokMSA_id:23244 Bacillus sp. N-4 
2.30.7.9.3.3453 OTU 1 seq
prokMSA_id:33780 Desulfonosporus thiosulfogenes 
2.30.7.9.3.3484 OTU 1 seq
prokMSA_id:46652 sp. Little Lake Magadi isolate 95LM4
2.30.7.9.3.3503 OTU 1 seq
prokMSA_id:16669 Bacillus sp. YUA25 
2.30.7.9.3.3502 OTU 4 seqs
prokMSA_id:14509 Bacillus sp. DSM 8722. X76446
prokMSA_id:14510 Bacillus sp. DSM 8719. X76443
prokMSA_id:70984 Bacillus sp. LMG 21005 strain LMG 21005 AJ316316
prokMSA_id:77491 Bacillus gibsonii strain SAFN-015 
2.30.7.9.3.3506 OTU 1 seq
prokMSA_id:44577 sp. Lake Nakuru isolate 18N1
2.30.7.9.3.3511 OTU 2 seqs
prokMSA_id:16790 Hailaer soda lake F23 
prokMSA_id:29235 Bacillus sp. KSM-K38 complete 
2.30.7.9.3.3532 OTU 1 seq
prokMSA_id:14499 Bacillus sp. DSM 8720
2.30.7.9.3.3531 OTU 1 seq
prokMSA_id:14497 Bacillus arsenicoselenatis str. E1H
2.30.7.9.3.3556 OTU 1 seq
prokMSA_id:46071 Bacillus sp. C-11 
2.30.7.9.3.3580 OTU 1 seq
prokMSA_id:29964 sp. Lake Bogoria isolate 9B1
2.30.7.9.3.3622 OTU 1 seq
prokMSA_id:44055 sp. Lake Elmenteita isolate 3E1
2.30.7.9.3.3624 OTU 26 seqs
prokMSA_id:14493 Bacillus sp. DSM 8718
prokMSA_id:14495 Bacillus sp. str. C-125
prokMSA_id:17467 Bacillus sp. GTC855 
prokMSA_id:21800 Bacillus sp. GTC854 
prokMSA_id:22552 Bacillus sp. A-59 
prokMSA_id:28745 Bacillus halodurans genomic section 3/14 AP001509
prokMSA_id:36945 Bacillus sp. 202-1 AB043844
prokMSA_id:37869 Bacillus halodurans strain DSM 497T AJ302709
prokMSA_id:38836 Bacillus sp. C-3 AB043847
prokMSA_id:40528 Bacillus halodurans 
prokMSA_id:42445 Bacillus halodurans 
prokMSA_id:46768 Bacillus halodurans genomic section 1/14 AP001507
prokMSA_id:52107 Bacillus halodurans complete 
prokMSA_id:53117 Bacillus halodurans ygaG orf ygxA rrnH- rrnH-23S rrnH-5S trn
prokMSA_id:53545 Bacillus halodurans dnaX yaaK recR yaaL bofA rrnB- rrnB-23S 
prokMSA_id:53774 Bacillus halodurans lysS rrnC- trn-Ile trn-Ala rrnC-23S rrnC
prokMSA_id:53960 Bacillus halodurans orf1 orf2 kbaA ybaN rrnE- rrnE-23S rrnE-
prokMSA_id:54054 Bacillus halodurans complete genome NC_002570
prokMSA_id:54430 Bacillus halodurans C-125 23S 5S and genes and tRNA-Ala Arg 
prokMSA_id:54477 Bacillus halodurans ydcI ydcK trn-Asn trn-Ser trn-Glu trn-Va
prokMSA_id:54543 Bacillus halodurans orf1 orf2 - -23S -5S yaaC guaB and compl
prokMSA_id:54652 Bacillus halodurans yvgQ rrnG- trn-lle trn-Ala rrnG-23S trn-
prokMSA_id:69133 Bacillus halodurans genomic section 4/14 AP001510
prokMSA_id:71735 Bacillus halodurans genomic section 2/14 AP001508
prokMSA_id:94086 Bacillus halodurans isolate 314 AF542087
prokMSA_id:94116 Bacillus halodurans isolate 34 AF542086
2.30.7.9.3.3633 OTU 44 seqs
prokMSA_id:14496 Bacillus sp. DSM 8715
prokMSA_id:14504 Bacillus sp. DSM 8724
prokMSA_id:14505 Bacillus alcalophilus DSM 485
prokMSA_id:14506 Bacillus alcaliinulinus str. AM31
prokMSA_id:14511 Bacillus sp. DSM 8716
prokMSA_id:14512 Bacillus Enterogermina str. Enterogermina
prokMSA_id:14513 Bacillus sp. DSM 8717
prokMSA_id:14515 Bacillus 4830 str. 4830. AF078814
prokMSA_id:14516 Bacillus sp. DSM 8714
prokMSA_id:16342 Bacillus clausii 
prokMSA_id:17073 Bacillus clausii strain za-w-3 
prokMSA_id:18096 Bacillus clausii 
prokMSA_id:20318 Bacillus pseudofirmus complete 
prokMSA_id:21446 Bacillus clausii strain SIN Enterogermina AJ297494
prokMSA_id:22363 Bacillus sp. O-4 
prokMSA_id:24084 sp. Lake Bogoria isolate 66B4
prokMSA_id:24551 Bacillus clausii strain LMG 19634 
prokMSA_id:25923 Bacillus sp. XE22-4-1 AF326122
prokMSA_id:31103 Bacillus sp. N-1 
prokMSA_id:32171 Bacillus sp. ikaite 27 isolate ikaite 27
prokMSA_id:34505 Bacillus clausii strain SIN84 Enterogermina AJ297498
prokMSA_id:36285 Bacillus halodurans strain:AH-101
prokMSA_id:37519 Bacillus sp. 169 
prokMSA_id:37620 Bacillus sp. 17-1 
prokMSA_id:37901 Bacillus clausii strain T Enterogermina AJ297493
prokMSA_id:38275 Bacillus sp. 27-1 
prokMSA_id:40868 Bacillus sp. 13 
prokMSA_id:41599 Bacillus sp. K12-5 
prokMSA_id:42836 Bacillus clausii strain N/R Enterogermina AJ297492
prokMSA_id:42958 Bacillus clausii strain O/C84 Enterogermina AJ297495
prokMSA_id:42999 Bacillus clausii strain N/R84 Enterogermina AJ297496
prokMSA_id:46525 Bacillus clausii strain T84 Enterogermina AJ297497
prokMSA_id:46785 Bacillus sp. 2b-2 AB043857
prokMSA_id:47686 Bacillus sp. 8-1 AB043842
prokMSA_id:47837 Bacillus pseudofirmus strain FTU 
prokMSA_id:49611 Bacillus clausii strain O/C Enterogermina AJ297491
prokMSA_id:55141 Bacillus clausii strain GMBAE 42 complete 
prokMSA_id:63157 Salibacillus sp. YIM-kkny3 
prokMSA_id:69971 Bacillus sp. IC 
prokMSA_id:70502 Bacillus sp. NER strain NER
prokMSA_id:71598 Bacillus clausii strain LMG 19610 
prokMSA_id:72213 Bacillus sp. WW3-SN6 
prokMSA_id:73573 Bacillus sp. H167 
prokMSA_id:76944 Clostridium sp. clone Sh765B-AG-44
2.30.7.9.3.3643 OTU 1 seq
prokMSA_id:14503 Bacillus vedderi str. JaH
2.30.7.9.3.3645 OTU 2 seqs
prokMSA_id:45141 Bacillus sp. KSM-S237 
prokMSA_id:73180 Bacillus sp. 1139 
2.30.7.9.3.3649 OTU 1 seq
prokMSA_id:24847 Bacillus sp. OS-5 strain OS-5
2.30.7.9.3.3653 OTU 1 seq
prokMSA_id:14507 Bacillus alcalophilus DSM 485
2.30.7.9.3.3661 OTU 1 seq
prokMSA_id:78617 Bacillus sp. 2216.25.2 
2.30.7.9.3.3667 OTU 1 seq
prokMSA_id:23919 sp. Lake Nakuru isolate 17N1
2.30.7.9.3.3688 OTU 1 seq
prokMSA_id:77521 Bacillus sp. SAFN-006 
2.30.7.9.3.3730 OTU 1 seq
prokMSA_id:59480 Bacillus baekryungensis 
2.30.7.9.3.3747 OTU 2 seqs
prokMSA_id:41956 Bacillus sp. C-59-2 
prokMSA_id:42049 Bacillus sp. 135 
2.30.7.9.3.3781 OTU 1 seq
prokMSA_id:17639 Hailaer soda lake T1 
2.30.7.9.3.3785 OTU 2 seqs
prokMSA_id:71532 Bacillus decolorationis 
prokMSA_id:72277 Bacillus decolorationis strain LMG 21001 AJ316304
2.30.7.9.3.3844 OTU 2 seqs
prokMSA_id:14500 Bacillus sp. DSM 8721
prokMSA_id:70518 Bacillus sp. S2 
2.30.7.9.3.3848 OTU 1 seq
prokMSA_id:78009 Bacillus sp. TUT1007 
2.30.7.9.3.3875 OTU 1 seq
prokMSA_id:31334 Bacillus sp. AM-001 
2.30.7.9.3.3879 OTU 1 seq
prokMSA_id:40983 sp. Lake Elmenteita isolate WE4
2.30.7.9.3.3893 OTU 3 seqs
prokMSA_id:18610 Bacillus sp
prokMSA_id:21885 str. 47083 
prokMSA_id:26954 Bacillus sp. A6 AF333090
2.30.7.9.3.3920 OTU 1 seq
prokMSA_id:23337 Hailaer soda lake T10 
2.30.7.9.3.3926 OTU 1 seq
prokMSA_id:26101 sp. Lake Bogoria isolate 64B4
2.30.7.10 B.MEGATERIUM_GROUP 428 seqs
2.30.7.10.1 B.STEAROTHERMOPHILUS_SUBGROUP 134 seqs
2.30.7.10.1.234 OTU 13 seqs
prokMSA_id:14528 Bacillus caldovelox DSM 411
prokMSA_id:14543 Bacillus thermoleovorans DSM 5366
prokMSA_id:14551 Bacillus caldolyticus DSM 405
prokMSA_id:23576 Bacillus vulcani strain 3S-1
prokMSA_id:28593 Geobacillus sacchari 
prokMSA_id:35138 Bacillus sp. G2 
prokMSA_id:57566 Geobacillus sp. T1 complete 
prokMSA_id:60458 Geobacillus lituanicus complete 
prokMSA_id:70432 Geobacillus thermoleovorans isolate I80
prokMSA_id:70679 Geobacillus thermoleovorans isolate T70
prokMSA_id:71742 Geobacillus thermoleovorans isolate T80
prokMSA_id:78662 Bacillus thermoleovorans isolate CCR11
prokMSA_id:85270 Geobacillus thermoleovorans strain G1 
2.30.7.10.1.283 OTU 5 seqs
prokMSA_id:14555 Bacillus thermocatenulatus DSM 730
prokMSA_id:42405 Bacillus stearothermophilus strain DSM 22T
prokMSA_id:60459 Geobacillus stearothermophilus strain 3 complete 
prokMSA_id:60460 Geobacillus stearothermophilus strain 32A complete 
prokMSA_id:74615 Geobacillus stearothermophilus strain 28 complete 
2.30.7.10.1.305 OTU 2 seqs
prokMSA_id:14564 Bacillus thermoleovorans ATCC 43513
prokMSA_id:14567 Bacillus kaustophilus NCIMB 8547
2.30.7.10.1.3249 OTU 17 seqs
prokMSA_id:14518 Bacillus flavothermus DSM 2641. Z26932
prokMSA_id:14519 Bacillus flavothermus DSM 2641. AF004589
prokMSA_id:14520 Bacillus sp. str. k-1
prokMSA_id:14521 Bacillus flavothermus str. AB001. AF001960
prokMSA_id:14522 Bacillus flavothermus str. AB002. AF001961
prokMSA_id:14524 Bacillus flavothermus str. AB004. AF001963
prokMSA_id:14525 Bacillus flavothermus str. AB005. AF001964
prokMSA_id:14526 str. BD5-12. AB015568
prokMSA_id:41783 Bacillus sp. OS-ac-18 U46747
prokMSA_id:66045 Anoxybacillus kamchatkensis AF510985
prokMSA_id:78530 Bacillus sp. YMY1010 AY198416
prokMSA_id:83767 Anoxybacillus gonensis strain A7 AY248708
prokMSA_id:84072 Anoxybacillus gonensis strain A4 AY248707
prokMSA_id:84979 Anoxybacillus kestanbolinensis strain K1 AY248709
prokMSA_id:85315 Anoxybacillus gonensis strain A2 AY248706
prokMSA_id:85346 Anoxybacillus kestanbolinensis strain K2 AY248710
prokMSA_id:85404 Anoxybacillus kestanbolinensis strain K4 AY248711
2.30.7.10.1.3269 OTU 1 seq
prokMSA_id:14531 Bacillus stearothermophilus str. NUB3621
2.30.7.10.1.3300 OTU 1 seq
prokMSA_id:14541 Bacillus sp. str. MH-1
2.30.7.10.1.3301 OTU 5 seqs
prokMSA_id:64299 Hyperthermophilic OGL-7B 
prokMSA_id:78614 Thermoactinomyces sp. 700375 
prokMSA_id:78806 Thermoactinomyces sp. H0165 
prokMSA_id:78838 Thermoactinomyces sp. C0170 
prokMSA_id:78879 Thermoactinomyces sp. 500275 
2.30.7.10.1.3332 OTU 1 seq
prokMSA_id:14559 str. HTA1422
2.30.7.10.1.3331 OTU 1 seq
prokMSA_id:14558 unnamed organism
2.30.7.10.1.3350 OTU 1 seq
prokMSA_id:14569 Bacillus sp. str. ICPS10
2.30.7.10.1.3373 OTU 1 seq
prokMSA_id:27737 Bacillus sp. Isopa5 
2.30.7.10.1.3460 OTU 13 seqs
prokMSA_id:14534 Bacillus thermodenitrificans str. OHT-1
prokMSA_id:14535 Bacillus thermodenitrificans. M77487
prokMSA_id:14536 Bacillus thermodenitrificans str. NS
prokMSA_id:14538 Bacillus thermodenitrificans str. T4
prokMSA_id:14539 Bacillus stearothermophilus str. K1041
prokMSA_id:23251 Geobacillus uzenensis strain X 
prokMSA_id:26066 Geobacillus subterraneus strain K 
prokMSA_id:45180 Geobacillus anatolicus strain SB 
prokMSA_id:46206 Geobacillus subterraneus strain 34 
prokMSA_id:67723 Bacillus sp. TS-3 
prokMSA_id:73417 Geobacillus uzenensis strain U 
prokMSA_id:74097 Geobacillus uralicus AY079151
prokMSA_id:88427 Geobacillus jurassicus strain DS1 AY312404
2.30.7.10.1.3508 OTU 1 seq
prokMSA_id:44578 Symbiobacterium toebii 
2.30.7.10.1.3516 OTU 1 seq
prokMSA_id:34691 Thermoactinomyces dichotomicus KCTC 3667 complete 
2.30.7.10.1.3515 OTU 9 seqs
prokMSA_id:14530 Bacillus caldoxylolyticus str. S1812 ATCC 700356. AF067651
prokMSA_id:27372 Bacillus sp. S1b-3 strain S1b-3
prokMSA_id:69206 Geobacillus caldoxylosilyticus isolate B70 AJ489326
prokMSA_id:71319 Bacillus thermoterrestris strain TS2A
prokMSA_id:74137 Bacillus thermoterrestris strain TS24A
prokMSA_id:86077 Geobacillus caldoxylosilyticus strain TK4 AY248718
prokMSA_id:86870 Geobacillus caldoxylosilyticus isolate F17 AJ564610
prokMSA_id:87339 Geobacillus caldoxylosilyticus isolate Tj AJ564618
prokMSA_id:96582 Geobacillus sp. R-7653 AY397769
2.30.7.10.1.3540 OTU 21 seqs
prokMSA_id:14544 Bacillus thermoleovorans str. H41
prokMSA_id:14545 Bacillus thermoleovorans str. B23
prokMSA_id:14550 str. HTA1418
prokMSA_id:18188 Bacillus sp. Cimanggu 
prokMSA_id:25595 Bacillus stearothermophilus 
prokMSA_id:34397 Bacillus sp. YNPRH2P-2 
prokMSA_id:39078 Bacillus sp. S 
prokMSA_id:40665 Bacillus sp. Papandayan 
prokMSA_id:55616 Bacillus sp. A3 
prokMSA_id:56299 Bacillus sp. B2 
prokMSA_id:58655 Bacillus sp. D1 
prokMSA_id:58659 Bacillus sp. V0 
prokMSA_id:58669 Bacillus sp. G62 
prokMSA_id:58677 Bacillus sp. E2 
prokMSA_id:58679 Bacillus sp. B6 
prokMSA_id:58680 Bacillus sp. B7 
prokMSA_id:58681 Bacillus sp. B5 
prokMSA_id:58682 Bacillus sp. B4 
prokMSA_id:58685 Bacillus sp. B1 
prokMSA_id:58687 Bacillus sp. B3 
prokMSA_id:73016 Bacillus thermoleovorans complete 
2.30.7.10.1.3571 OTU 2 seqs
prokMSA_id:14557 Bacillus TA2.A1 str. TA2.A1
prokMSA_id:33289 Bacillus sp. TX3 
2.30.7.10.1.3763 OTU 1 seq
prokMSA_id:17121 Bacillus sp. Isopa9 
2.30.7.10.1.3776 OTU 25 seqs
prokMSA_id:14542 Bacillus pallidus DSM 3670
prokMSA_id:14566 Bacillus sp. DSM 2349
prokMSA_id:19352 Bacillus sp. B-3 
prokMSA_id:56614 Bacillus sp. IZ3 
prokMSA_id:58658 Bacillus sp. IZ5 
prokMSA_id:58660 Bacillus sp. IZ4 
prokMSA_id:58661 Bacillus sp. H6 
prokMSA_id:58662 Bacillus sp. H2 
prokMSA_id:58663 Bacillus sp. H4 
prokMSA_id:58664 Bacillus sp. H5 
prokMSA_id:58665 Bacillus sp. H3 
prokMSA_id:58666 Bacillus sp. H1 
prokMSA_id:58667 Bacillus sp. G8 AB089226
prokMSA_id:58668 Bacillus sp. G7 
prokMSA_id:58670 Bacillus sp. G5 
prokMSA_id:58671 Bacillus sp. G3 
prokMSA_id:58672 Bacillus sp. G2 AB089220
prokMSA_id:58673 Bacillus sp. G1 
prokMSA_id:58674 Bacillus sp. F2 
prokMSA_id:58675 Bacillus sp. E3 
prokMSA_id:58676 Bacillus sp. F1 
prokMSA_id:58678 Bacillus sp. E1 
prokMSA_id:74568 Bacillus sp. G4 
prokMSA_id:87853 Geobacillus sp. isolate F16 AJ564609
prokMSA_id:87910 Geobacillus sp. isolate Td AJ564615
2.30.7.10.1.3836 OTU 4 seqs
prokMSA_id:14548 str. HTA426
prokMSA_id:14549 str. HTA462
prokMSA_id:58656 Bacillus sp. G6 AB089239
prokMSA_id:58657 Bacillus sp. VA2 
2.30.7.10.1.385 OTU 1 seq
prokMSA_id:14552 Bacillus stearothermophilus str. T10
2.30.7.10.1.3859 OTU 1 seq
prokMSA_id:41281 Thermoactinomyces sanguinis 
2.30.7.10.1.3871 OTU 4 seqs
prokMSA_id:14560 str. HTA1417
prokMSA_id:14561 str. HTA1420. AB002650
prokMSA_id:14562 str. HTA1416. AB002651
prokMSA_id:14563 str. HTA1415
2.30.7.10.1.462 OTU 1 seq
prokMSA_id:14533 Bacillus denitrificans DSM 466
2.30.7.10.1.571 OTU 1 seq
prokMSA_id:14568 Bacillus caldotenax DSM 406
2.30.7.10.1.829 OTU 1 seq
prokMSA_id:78768 Geobacillus sp. YMTC1049 
2.30.7.10.2 B.SMITHII_SUBGROUP 4 seqs
2.30.7.10.2.3635 OTU 1 seq
prokMSA_id:76677 Bacillus eolicus strain 4-1T
2.30.7.10.2.3896 OTU 3 seqs
prokMSA_id:14573 Bacillus smithii DSM 4216 . Z26935
prokMSA_id:23483 Bacillus sp. C7 
prokMSA_id:94287 Bacillus smithii strain R-7170 AY373319
2.30.7.10.3 B.METHANOLICUS_SUBGROUP 6 seqs
2.30.7.10.3.3280 OTU 1 seq
prokMSA_id:41508 maize root Zmrc174 
2.30.7.10.3.3291 OTU 2 seqs
prokMSA_id:14575 Bacillus methanolicus str. C1 NCIMB 13114
prokMSA_id:14578 Bacillus methanolicus str. C1 NCIMB 13114
2.30.7.10.3.3384 OTU 1 seq
prokMSA_id:14576 clone RFN44
2.30.7.10.3.3779 OTU 2 seqs
prokMSA_id:14577 Bacillus infernus str. TH-22 =SMCC/W 478
prokMSA_id:14581 Bacillus infernus str. TH-23 =SMCC/W 479
2.30.7.10.4 B.SPOROTHERMODURANS_SUBGROUP 46 seqs
2.30.7.10.4.3272 OTU 1 seq
prokMSA_id:33595 compost 4-75 
2.30.7.10.4.3349 OTU 11 seqs
prokMSA_id:14594 Bacillus thermoamylovorans str. DKP CNCM I-1378
prokMSA_id:18183 Bacillus sp. strain TGS537 AB020196
prokMSA_id:33604 Bacillus sp. G11 AY062014
prokMSA_id:41225 compost 4-50 AB034714
prokMSA_id:44525 Bacillus sp. strain TGS650 AB020197
prokMSA_id:79671 B.circulans strain WSBC 20060 Y13064
prokMSA_id:79728 B.circulans strain WSBC 20061 Y13065
prokMSA_id:91159 Bacillus circulans isolate B from South Africa AY294321
prokMSA_id:91989 Bacillus circulans isolate B from Poland AY294319
prokMSA_id:96928 Lactobacter thermoamylovorans isolate ISR01 Y14141
prokMSA_id:97746 Bacillus thermoamylovorans AB121094
2.30.7.10.4.3391 OTU 4 seqs
prokMSA_id:34699 pPD14 
prokMSA_id:35194 pPD4 
prokMSA_id:36181 pPD13 
prokMSA_id:45759 pPD12 
2.30.7.10.4.3411 OTU 1 seq
prokMSA_id:16783 Bacillus carboniphilus 
2.30.7.10.4.3417 OTU 1 seq
prokMSA_id:34734 Bacillus sp. MB-11 
2.30.7.10.4.3469 OTU 3 seqs
prokMSA_id:14591 Bacillus oleronius str. Rt 10 DSM 9356
prokMSA_id:14592 Bacillus sp. str. Termite isolate iv. X81130
prokMSA_id:48382 Bacillus oleronius AF393508
2.30.7.10.4.3473 OTU 1 seq
prokMSA_id:14593 clone DA136
2.30.7.10.4.3581 OTU 1 seq
prokMSA_id:17956 Bacillus sp. strain TGS137
2.30.7.10.4.3743 OTU 1 seq
prokMSA_id:66467 clone cvf77034 
2.30.7.10.4.3757 OTU 4 seqs
prokMSA_id:14596 Bacillus 115898 str. 115898
prokMSA_id:16862 Bacillus sp. TAT105 
prokMSA_id:25041 Bacillus sp. TAT112 
prokMSA_id:98060 Bacillus sp. R-6488 AY397764
2.30.7.10.4.3827 OTU 7 seqs
prokMSA_id:24269 soil clone 911-1 
prokMSA_id:24811 soil clone 432-1 
prokMSA_id:55942 Bacillus aquaemaris strain TF-12 AF483625
prokMSA_id:69789 LMG 18435 strain LMG 18435
prokMSA_id:71698 Bacillus acidogenesis 
prokMSA_id:72894 Bacillus sp. SG-1 AF326373
prokMSA_id:90462 Bacillus vietnamensis AB099708
2.30.7.10.4.3845 OTU 3 seqs
prokMSA_id:43776 compost 4-11 
prokMSA_id:47302 compost 4-74 
prokMSA_id:51860 pPD15 
2.30.7.10.4.3856 OTU 2 seqs
prokMSA_id:14588 Bacillus IPso1 str. IPso1
prokMSA_id:14589 Bacillus IPso2 str. IPso2
2.30.7.10.4.3895 OTU 5 seqs
prokMSA_id:14584 Bacillus sporothermodurans str. M215 DSM 10599
prokMSA_id:14585 Bacillus sporothermodurans str. M215 DSM 10599
prokMSA_id:14587 Bacillus sporothermodurans str. M215 DSM 10599
prokMSA_id:19142 Bacillus sporothermodurans strain LMG 17897 MB 372 AJ302941
prokMSA_id:27057 Bacillus sporothermodurans strain LMG 17883 MB 385 AJ302942
2.30.7.10.4.3916 OTU 1 seq
prokMSA_id:28732 compost 4-57 
2.30.7.10.5 VR.PANTOTHENTICUS_SUBGROUP 55 seqs
2.30.7.10.5.3265 OTU 1 seq
prokMSA_id:70340 Virgibacillus carmonensis strain LMG 20964 T
2.30.7.10.5.3268 OTU 1 seq
prokMSA_id:19694 Lentibacillus salicampi 
2.30.7.10.5.3308 OTU 1 seq
prokMSA_id:42141 Bacillus sp. MB-9 
2.30.7.10.5.3309 OTU 2 seqs
prokMSA_id:14608 Virgibacillus pantothenticus IAM 11061
prokMSA_id:42215 Virgibacillus pantothenticus strain:M1-4
2.30.7.10.5.3320 OTU 1 seq
prokMSA_id:16928 Filobacillus milensis 
2.30.7.10.5.3344 OTU 9 seqs
prokMSA_id:39733 Halobacillus sp. K3-1 strain K3-1
prokMSA_id:60368 Bacillaceae PH28 AF513472
prokMSA_id:60380 Bacillaceae LA42 
prokMSA_id:63146 Halobacillus sp. YIM-kkny15 AY121438
prokMSA_id:63158 Halobacillus sp. YIM-kkny2 
prokMSA_id:71975 Halobacillus sp. I7 strain I7 AJ291754
prokMSA_id:72101 Halobacillus sp. I3 strain I3 AJ291753
prokMSA_id:80237 Halobacillus locisalis 
prokMSA_id:92555 Halobacillus sp. D-8 AY351395
2.30.7.10.5.3367 OTU 1 seq
prokMSA_id:21848 Bacillus nitritophilus strain IB-256
2.30.7.10.5.3408 OTU 2 seqs
prokMSA_id:41371 Bacillus halophilus 
prokMSA_id:42873 Bacillus halophilus strain DSM 4771T
2.30.7.10.5.3429 OTU 1 seq
prokMSA_id:40994 compost 4-49 
2.30.7.10.5.3447 OTU 1 seq
prokMSA_id:32515 Halobacillus sp. AB007 
2.30.7.10.5.3480 OTU 1 seq
prokMSA_id:47685 Bacillus litoralis strain IB-B4
2.30.7.10.5.3488 OTU 1 seq
prokMSA_id:66685 Halobacillus salinus strain HSL-3 
2.30.7.10.5.3552 OTU 1 seq
prokMSA_id:56418 Paraliobacillus ryukyuensis 
2.30.7.10.5.3554 OTU 1 seq
prokMSA_id:34922 Bacillus litoralis strain IB-B8
2.30.7.10.5.3582 OTU 2 seqs
prokMSA_id:14616 Sporosarcina ureae
prokMSA_id:14617 Halobacillus halophilus NCIMB 2269
2.30.7.10.5.3603 OTU 1 seq
prokMSA_id:63156 Amphibacillus sp. YIM-kkny6 
2.30.7.10.5.3692 OTU 1 seq
prokMSA_id:22996 Hailaer soda lake F10 
2.30.7.10.5.3700 OTU 1 seq
prokMSA_id:23741 marine AS-39 
2.30.7.10.5.3702 OTU 1 seq
prokMSA_id:62835 Amphibacillus xylanus strain DSM 6626
2.30.7.10.5.3712 OTU 1 seq
prokMSA_id:14603 Gracilibacillus dipsosauri str. DD1
2.30.7.10.5.3714 OTU 6 seqs
prokMSA_id:14611 firmicute strain HTE831 
prokMSA_id:59386 Oceanobacillus iheyensis complete genome NC_004193
prokMSA_id:59715 Oceanobacillus iheyensis genomic section 8/13
prokMSA_id:59716 Oceanobacillus iheyensis genomic section 3/13
prokMSA_id:59718 Oceanobacillus iheyensis genomic section 4/13
prokMSA_id:59720 Oceanobacillus iheyensis genomic section 1/13 AP004593
2.30.7.10.5.3718 OTU 1 seq
prokMSA_id:14604 Gracilibacillus halotolerans str. NN
2.30.7.10.5.3726 OTU 2 seqs
prokMSA_id:14612 Bacillus marismortui str. 123
prokMSA_id:73885 Bacillus permians complete 
2.30.7.10.5.3734 OTU 1 seq
prokMSA_id:14609 Virgibacillus proomii LMG 12370
2.30.7.10.5.3749 OTU 1 seq
prokMSA_id:14615 Marinococcus albus DSM 20748
2.30.7.10.5.3756 OTU 1 seq
prokMSA_id:63140 Salibacillus sp. YIM-kkny16 
2.30.7.10.5.3769 OTU 1 seq
prokMSA_id:63145 Gracilibacillus sp. YIM-kkny13 
2.30.7.10.5.3780 OTU 1 seq
prokMSA_id:46172 Virgibacillus necropolis 
2.30.7.10.5.3849 OTU 3 seqs
prokMSA_id:14614 Halobacillus litoralis str. SL-4 DSM 10405
prokMSA_id:44334 Halobacillus trueperi strain DSM 10404T
prokMSA_id:66422 Halobacillus karajiensis strain DSM 14948
2.30.7.10.5.3868 OTU 3 seqs
prokMSA_id:37471 Bacillus sp. 19490 
prokMSA_id:55867 Bacillus sp. BacB10 AF497256
prokMSA_id:73499 Bacillus endophyticus 
2.30.7.10.5.3892 OTU 2 seqs
prokMSA_id:39395 Bacillus halodenitrificans 
prokMSA_id:87957 Bacillus sp. NT16 AJ488179
2.30.7.10.5.3913 OTU 2 seqs
prokMSA_id:14602 Bacillus sp. str. WN13 DSM 5271
prokMSA_id:26016 Bacillus haloalkaliphilus 
2.30.7.10.6 B.BADIUS_SUBGROUP 5 seqs
2.30.7.10.6.3343 OTU 1 seq
prokMSA_id:14621 Bacillus '112442 JS2' str. 112442 JS2
2.30.7.10.6.3377 OTU 3 seqs
prokMSA_id:47208 Bacillus sp. UM14 AF354665
prokMSA_id:68753 Glacial ice G200-N5 
prokMSA_id:73402 Bacillus sp. 76992 
2.30.7.10.6.3609 OTU 1 seq
prokMSA_id:14620 Bacillus badius ATCC 14574
2.30.7.10.7 B.LENTUS_SUBGROUP 10 seqs
2.30.7.10.7.3339 OTU 1 seq
prokMSA_id:28803 Bacillus sp. N6 
2.30.7.10.7.3351 OTU 1 seq
prokMSA_id:14624 Bacillus benzoevorans str. YEO5
2.30.7.10.7.3438 OTU 1 seq
prokMSA_id:39686 Bacillus sp. HT-1 
2.30.7.10.7.3509 OTU 1 seq
prokMSA_id:50925 Bacillus benzoevorans 
2.30.7.10.7.3610 OTU 3 seqs
prokMSA_id:32275 Bacillus sp. TH64 
prokMSA_id:40353 Bacillus sp. TP81 
prokMSA_id:71600 Bacillus sp. TP50 
2.30.7.10.7.3636 OTU 1 seq
prokMSA_id:49517 Bacillus sp. strain TGS337
2.30.7.10.7.3725 OTU 1 seq
prokMSA_id:76722 Bacillus sp. strain R-6760
2.30.7.10.7.3805 OTU 1 seq
prokMSA_id:24211 Bacillus sp. VAN26 
2.30.7.10.8 B.PSEUDOMEGATERIUM_SUBGROUP 115 seqs
2.30.7.10.8.3283 OTU 39 seqs
prokMSA_id:14627 str. 5-28
prokMSA_id:16708 soil clone 912-1 
prokMSA_id:19733 from anoxic bulk soil clone BSV84
prokMSA_id:29974 Bacillus sp. 19498 
prokMSA_id:34978 Bacillus niacini 
prokMSA_id:39569 from anoxic bulk soil clone BSV77
prokMSA_id:40603 from anoxic bulk soil clone BSV71
prokMSA_id:69987 Bacillus sp. R-10919 
prokMSA_id:71081 Bacillus fumarioli strain LMG 17489
prokMSA_id:71713 Bacillus fumarioli strain LMG 18418
prokMSA_id:72371 Bacillus sp. LMG 20241 strain LMG 20241
prokMSA_id:72486 Bacillus fumarioli strain LMG 17492
prokMSA_id:73777 Bacillus fumarioli strain LMG 18409
prokMSA_id:75807 Clostridium sp. clone Sh765B-TzT-30
prokMSA_id:77044 Bacillaceae clone GR21 AY150889
prokMSA_id:77359 Bacillus niacini strain SAFN-019 
prokMSA_id:77431 Bacillus niacini strain SAFN-021 
prokMSA_id:77490 Bacillus niacini strain SAFN-011 
prokMSA_id:81120 Bacillus soli strain LMG 21839
prokMSA_id:81371 Bacillus novalis strain LMG 21836
prokMSA_id:81794 Bacillus vireti strain LMG 21834
prokMSA_id:82044 Bacillus novalis strain LMG 21835
prokMSA_id:82239 Bacillus soli strain LMG 21838
prokMSA_id:82298 Bacillus soli strain LMG 21840
prokMSA_id:86709 Bacillus sp. IDA1908 isolate IDA1908 AJ563505
prokMSA_id:86727 Bacillus sp. IDA1851 isolate IDA1851 AJ563503
prokMSA_id:86802 Bacillus sp. IDA2156 isolate IDA2156 AJ563506
prokMSA_id:86808 Bacillus sp. IDA1626 isolate IDA1626 AJ563495
prokMSA_id:86839 Bacillus sp. IDA3293 isolate IDA3293 AJ563510
prokMSA_id:87008 Bacillus sp. IDA2265 isolate IDA2265 AJ563497
prokMSA_id:87027 Bacillus sp. IDA3493 isolate IDA3493 AJ563512
prokMSA_id:87069 Bacillus sp. IDA2021 isolate IDA2021 AJ563534
prokMSA_id:87340 Bacillus sp. IDA1928 isolate IDA1928 AJ563502
prokMSA_id:87407 Bacillus sp. IDA1790 isolate IDA1790 AJ563501
prokMSA_id:87465 Bacillus sp. IDA1692 isolate IDA1692 AJ563504
prokMSA_id:87850 Bacillus sp. IDA2290 isolate IDA2290 AJ563499
prokMSA_id:87857 Bacillus sp. IDA1746 isolate IDA1746 AJ563500
prokMSA_id:88007 Bacillus sp. IDA3428 isolate IDA3428 AJ563511
prokMSA_id:88009 Bacillus sp. IDA3120 isolate IDA3120 AJ563509
2.30.7.10.8.3355 OTU 1 seq
prokMSA_id:14626 Bacillus pseudomegaterium ATCC 49866
2.30.7.10.8.3388 OTU 1 seq
prokMSA_id:14631 DA015 
2.30.7.10.8.3403 OTU 1 seq
prokMSA_id:14638 Bacillus IDA624 str. IDA624
2.30.7.10.8.3414 OTU 1 seq
prokMSA_id:74752 TzT-JG-1-2 
2.30.7.10.8.3439 OTU 43 seqs
prokMSA_id:14628 clone DA154
prokMSA_id:14632 DA011 Y07580
prokMSA_id:14637 Bacillus IDA216 str. IDA216
prokMSA_id:14640 DA134 
prokMSA_id:14641 clone DA036. AJ000981
prokMSA_id:14644 Bacillus IDA629 str. IDA629. AJ132749
prokMSA_id:14656 Bacillus 171544 str. 171544. AF071856
prokMSA_id:14680 Bacillus cohnii DSM 6307 . X76437
prokMSA_id:14682 Bacillus cohnii str. ML-A10. AF140014
prokMSA_id:14683 Bacillus cohnii str. YN-2000. AB023412
prokMSA_id:16306 DA056 mark02 
prokMSA_id:21215 Bacillus sp. PL-12 AF326366
prokMSA_id:26501 Bacillus sp. Y AB055095
prokMSA_id:29621 Bacillus sp. D6 AB043849
prokMSA_id:29984 Bacillus sp. SD521 AB055096
prokMSA_id:31965 Bacillus sp. 199 AB043861
prokMSA_id:36408 soil clone 716-1 AF423287
prokMSA_id:39292 Hailaer soda lake F6 AF275705
prokMSA_id:46286 DA001 mark03 
prokMSA_id:52613 Bacillus psychrosaccharolyticus 
prokMSA_id:65500 Bacillus macroides strain HAMBI2406 AF501367
prokMSA_id:65513 Bacillus macroides strain HAMBI2395 AF501351
prokMSA_id:68750 Glacial ice G200-T19 AF479351
prokMSA_id:69411 Bacillus pichinotyi strain RS13 AF519463
prokMSA_id:69694 Bacillus casamancensis AF519462
prokMSA_id:70528 Bacillus sp. Domas clone A4 AF228798
prokMSA_id:70683 Bacillus pichinotyi strain RS1 AF519460
prokMSA_id:70759 Bacillus sp. 19493 AJ315061
prokMSA_id:71049 Bacillus sp. YY complete 
prokMSA_id:71589 Bacillus pichinotyi strain RS2 AF519464
prokMSA_id:73206 Bacillus sp. 19495 AJ315063
prokMSA_id:73528 Bacillus macroides strain HAMBI2375 AF501337
prokMSA_id:76322 Clostridium sp. clone Sh765B-TzT-70 AJ519638
prokMSA_id:77312 Bacillus benzoevorans strain SAFN-025 
prokMSA_id:77545 Bacillus benzoevorans strain SAFN-024 
prokMSA_id:88158 Bacillus sp. IDA3504 isolate IDA3504 AJ544784
prokMSA_id:89731 Bacillus sp. IDA1527 isolate IDA1527 AJ544783
prokMSA_id:91002 K93 AY345455
prokMSA_id:91142 K2-83 AY345482
prokMSA_id:91782 K2-77 AY345487
prokMSA_id:91798 K34 AY345475
prokMSA_id:91938 R5B AY345357
prokMSA_id:96553 clone S441 AY382610
2.30.7.10.8.3448 OTU 1 seq
prokMSA_id:27759 isolate B4
2.30.7.10.8.3476 OTU 3 seqs
prokMSA_id:85077 clone:ALU14
prokMSA_id:85484 clone:ALU30
prokMSA_id:86563 clone:ALU31
2.30.7.10.8.3495 OTU 1 seq
prokMSA_id:17518 pPD7 
2.30.7.10.8.3589 OTU 8 seqs
prokMSA_id:33764 from anoxic bulk soil clone BSV04
prokMSA_id:69114 Bacillus senegalensis strain RS6 
prokMSA_id:69468 Bacillus arbutinivorans 
prokMSA_id:69657 Bacillus djibelorensis 
prokMSA_id:72679 Bacillus senegalensis strain RS8 
prokMSA_id:81391 Bacillus drentensis strain LMG 21830
prokMSA_id:81770 Bacillus bataviensis strain LMG 21833
prokMSA_id:81960 Bacillus bataviensis strain LMG 21832
2.30.7.10.8.3617 OTU 1 seq
prokMSA_id:48416 from anoxic bulk soil clone BSV45
2.30.7.10.8.3639 OTU 7 seqs
prokMSA_id:27556 Virgibacillus picturae strain LMG 19492 T AJ315060
prokMSA_id:28572 Bacillus sp. MB-7 
prokMSA_id:28827 Bacillus sp. MB-3 
prokMSA_id:35899 Bacillus sp. MB-1 
prokMSA_id:39597 Virgibacillus picturae strain LMG-19416
prokMSA_id:63154 YIM-kkny4 
prokMSA_id:70179 Virgibacillus picturae strain LMG 20959
2.30.7.10.8.3644 OTU 1 seq
prokMSA_id:27496 from anoxic bulk soil clone BSV05
2.30.7.10.8.3650 OTU 1 seq
prokMSA_id:35487 clone P3IB-17 
2.30.7.10.8.3671 OTU 1 seq
prokMSA_id:70428 I-110 
2.30.7.10.8.3689 OTU 1 seq
prokMSA_id:54667 soil clone 335-1 
2.30.7.10.8.3758 OTU 1 seq
prokMSA_id:63143 Amphibacillus sp. YIM-kkny10 
2.30.7.10.8.3861 OTU 2 seqs
prokMSA_id:26443 from anoxic bulk soil clone BSV55
prokMSA_id:43113 from anoxic bulk soil clone BSV46
2.30.7.10.8.3878 OTU 1 seq
prokMSA_id:14642 DA066 
2.30.7.10.9 B.FIRMUS_SUBGROUP 8 seqs
2.30.7.10.9.1050 OTU 1 seq
prokMSA_id:14647 Bacillus firmus IAM 12464
2.30.7.10.9.246 OTU 1 seq
prokMSA_id:85211 Bacillus sp. 6160m-C1 isolate 6160m-C1
2.30.7.10.9.3295 OTU 1 seq
prokMSA_id:22928 Bacillus sp. VAN35 
2.30.7.10.9.3574 OTU 1 seq
prokMSA_id:46942 Thermoactinomyces kribbensis 
2.30.7.10.9.3742 OTU 2 seqs
prokMSA_id:14648 Bacillus marinus DSM 1297
prokMSA_id:23280 Bacillus marinus 
2.30.7.10.9.3744 OTU 1 seq
prokMSA_id:17006 Bacillus sp. FO-092 
2.30.7.10.9.429 OTU 1 seq
prokMSA_id:14646 Bacillus firmus NCIMB 9366
2.30.7.10.10 B.CIRCULANS_SUBGROUP 2 seqs
2.30.7.10.10.3454 OTU 1 seq
prokMSA_id:14659 Bacillus benzoevorans NCIMB 12555
2.30.7.10.10.3623 OTU 1 seq
prokMSA_id:46961 Bacillus circulans 
2.30.7.10.11 B.SIMPLEX_SUBGROUP 24 seqs
2.30.7.10.11.3337 OTU 8 seqs
prokMSA_id:45468 Bacillus sp. Kaza-34 
prokMSA_id:46809 Bacillus sp. LMG 20238 strain LMG 20238
prokMSA_id:52516 Bacillus sp. isolate P53-2
prokMSA_id:68732 Glacial ice SB100-8-1-1 
prokMSA_id:71264 Bacillus macroides strain KL-009 
prokMSA_id:75028 Bacillus sp. 'kanghwensis' 
prokMSA_id:75224 Clostridium sp. clone Sh765B-TzT-27
prokMSA_id:77384 Bacillus macroides strain SAFN-005 
2.30.7.10.11.3401 OTU 1 seq
prokMSA_id:81206 Bacillus sp. HJ16 
2.30.7.10.11.3456 OTU 1 seq
prokMSA_id:75255 Bacillaceae clone glen99_20 
2.30.7.10.11.3474 OTU 1 seq
prokMSA_id:14667 unnamed organism
2.30.7.10.11.3500 OTU 7 seqs
prokMSA_id:14668 Bacillus macroides str. dhr2
prokMSA_id:26376 Bacillus sp. LMG 21002 strain LMG 21002
prokMSA_id:33158 Bacillus sp. 19489 
prokMSA_id:68730 Glacial ice SB150-2A2 
prokMSA_id:72962 Bacillus sp. 19491 
prokMSA_id:73022 Bacillus sp. 19494 
prokMSA_id:82125 Bacillus sp. HJ8 
2.30.7.10.11.3555 OTU 5 seqs
prokMSA_id:14666 Bacillus macroides NCDO 1661
prokMSA_id:25387 Bacillus macroides strain JPL-4 
prokMSA_id:31293 soil clone 1296-1 
prokMSA_id:68488 Bacillus simplex strain DSM 1321T
prokMSA_id:68767 Glacial ice G500K-17 
2.30.7.10.11.3899 OTU 1 seq
prokMSA_id:14669 DA032 
2.30.7.10.12 B.MEGATERIUM_SUBGROUP 19 seqs
2.30.7.10.12.3546 OTU 1 seq
prokMSA_id:41058 Bacillus megaterium isolate B70 
2.30.7.10.12.3550 OTU 18 seqs
prokMSA_id:17758 Bacillus sp. No.51 AB066344
prokMSA_id:20365 Bacillus sp. No.49 AB066347
prokMSA_id:22479 Bacillus megaterium strain KL-197 AY030338
prokMSA_id:23021 Bacillus sp. No.61 
prokMSA_id:28208 Bacillus sp. 19497 AJ315065
prokMSA_id:33074 Bacillus megaterium strain KL-181 
prokMSA_id:36437 Bacillus sp. No.44 AB066339
prokMSA_id:36736 Bacillus sp. No.54 AB066345
prokMSA_id:60442 Bacillus sp. Fa29 
prokMSA_id:68766 Glacial ice G500K-18 
prokMSA_id:74302 Bacillus sp. LMG 20240 strain LMG 20240
prokMSA_id:77310 Bacillus megaterium strain SAFR-038 AY167862
prokMSA_id:77319 Bacillus megaterium strain SAFR-040 AY167861
prokMSA_id:77353 Bacillus megaterium strain SAFN-040 
prokMSA_id:77354 Bacillus megaterium strain SAFN-002 
prokMSA_id:77554 Bacillus megaterium strain SAFR-011 AY167865
prokMSA_id:81504 Bacillus megaterium plasmid pBM400 complete NC_004604
prokMSA_id:81816 Bacillus megaterium plasmid pBM400 complete AF142677
2.30.7.11 B.SUBTILIS_GROUP 243 seqs
2.30.7.11.1 B.COHNII_SUBGROUP 19 seqs
2.30.7.11.1.3277 OTU 1 seq
prokMSA_id:47996 Bacillus sp. KL-152 
2.30.7.11.1.3362 OTU 1 seq
prokMSA_id:83070 Bacillus horikoshii 
2.30.7.11.1.3375 OTU 1 seq
prokMSA_id:30044 soil clone 1448-1 
2.30.7.11.1.3426 OTU 1 seq
prokMSA_id:72071 Bacillus sp. strain LMG-19415
2.30.7.11.1.3472 OTU 1 seq
prokMSA_id:23879 Low G+C Gram-positive MPD-63 
2.30.7.11.1.3562 OTU 1 seq
prokMSA_id:55982 Glacial ice G500K-19 
2.30.7.11.1.3715 OTU 2 seqs
prokMSA_id:41580 Bacillus sp. NAF001 
prokMSA_id:46547 Bacillus sp. jshs2 AY039821
2.30.7.11.1.3728 OTU 1 seq
prokMSA_id:26043 Bacillus naganoensis 
2.30.7.11.1.3732 OTU 1 seq
prokMSA_id:14681 clone DA026
2.30.7.11.1.3886 OTU 3 seqs
prokMSA_id:14684 str. HTA437
prokMSA_id:14685 str. HTA506
prokMSA_id:96883 Bacillus sp. R-6782 AY422984
2.30.7.11.1.3904 OTU 6 seqs
prokMSA_id:14679 Bacillus sp. DSM 8723
prokMSA_id:31425 Bacillus sp. KX6 
prokMSA_id:41217 Bacillus sp. KSM-KP43 
prokMSA_id:42189 Bacillus horikoshii 
prokMSA_id:45974 Bacillus sp. NCIB12289 
prokMSA_id:68751 Glacial ice G200-T16 
2.30.7.11.2 EXG.ACETYLICUM_SUBGROUP 37 seqs
2.30.7.11.2.3252 OTU 8 seqs
prokMSA_id:14691 Exiguobacterium aurantiacum NCDO 2321
prokMSA_id:14695 clone SB-22. AF029046
prokMSA_id:30620 SB22/GOBB3-111 AF321049
prokMSA_id:40417 str. 61610 
prokMSA_id:48885 Hailaer soda lake Z8 
prokMSA_id:73436 CHA3-116 clone CHA3-116 AJ132738
prokMSA_id:75706 Exiguobacterium sp. B10 isolate B10 AJ518821
prokMSA_id:91390 K2-67 AY345407
2.30.7.11.2.3256 OTU 1 seq
prokMSA_id:26493 NoosaAW69 
2.30.7.11.2.3255 OTU 2 seqs
prokMSA_id:29825 NoosaAW16 AF269015
prokMSA_id:52292 NoosaAW57 
2.30.7.11.2.3266 OTU 1 seq
prokMSA_id:62984 Exiguobacterium sp. clone T6-7 rrn 
2.30.7.11.2.3338 OTU 2 seqs
prokMSA_id:28796 NoosaAW12 
prokMSA_id:71763 NoosaAW79 
2.30.7.11.2.3464 OTU 1 seq
prokMSA_id:34290 TM7LH17 
2.30.7.11.2.3614 OTU 3 seqs
prokMSA_id:14689 Exiguobacterium sp
prokMSA_id:32124 Exiguobacterium aff. acetylicum C/C-aer/b 
prokMSA_id:72912 Exiguobacterium undae strain L2
2.30.7.11.2.3642 OTU 1 seq
prokMSA_id:49147 SBR2004 
2.30.7.11.2.3679 OTU 4 seqs
prokMSA_id:83017 clone D37 
prokMSA_id:84507 clone D113 
prokMSA_id:86567 clone D41 
prokMSA_id:86668 clone D45 AY274161
2.30.7.11.2.3710 OTU 1 seq
prokMSA_id:29374 NoosaAW93 
2.30.7.11.2.3754 OTU 4 seqs
prokMSA_id:27345 Exiguobacterium aurantiacum var. Colo. Road AY047481
prokMSA_id:40496 Marine NBF29 AF343950
prokMSA_id:81209 Exiguobacterium sp. BTAH1 
prokMSA_id:93699 Exiguobacterium acetylicum AY297792
2.30.7.11.2.3755 OTU 3 seqs
prokMSA_id:14687 Exiguobacterium acetylicum
prokMSA_id:14688 Exiguobacterium acetylicum NCIMB 9889
prokMSA_id:68746 Glacial ice SB12K-2-2 
2.30.7.11.2.3765 OTU 1 seq
prokMSA_id:14694 Bacillus sp. str. S2-97
2.30.7.11.2.3826 OTU 1 seq
prokMSA_id:71959 NoosaAW01 
2.30.7.11.2.3841 OTU 1 seq
prokMSA_id:23156 clone d152 
2.30.7.11.2.3847 OTU 1 seq
prokMSA_id:18919 Potato plant root clone RC-III-8 
2.30.7.11.2.3855 OTU 1 seq
prokMSA_id:44986 low G+C Gram-positive clone MPD-16 
2.30.7.11.2.3923 OTU 1 seq
prokMSA_id:14692 str. BD4-8
2.30.7.11.4 B.PUMILUS_SUBGROUP 30 seqs
2.30.7.11.4.3345 OTU 6 seqs
prokMSA_id:17740 Bacillus pumilus A586 
prokMSA_id:18224 Bacillus pumilus strain FO-038 
prokMSA_id:49034 Bacillus pumilus strain FO-033 
prokMSA_id:60383 Bacillaceae LA10 
prokMSA_id:82717 Bacillus pumilus 
prokMSA_id:83670 Bacillus pumilus strain WN695 AY260860
2.30.7.11.4.3398 OTU 1 seq
prokMSA_id:63742 Bacillus pumilus isolate EI-26-7
2.30.7.11.4.3441 OTU 1 seq
prokMSA_id:48390 Bacillus sp. VAN13 
2.30.7.11.4.3773 OTU 11 seqs
prokMSA_id:18698 Bacillus pumilus complete sequense strain:M1-9-1
prokMSA_id:55661 Bacillus pumilus isolate EI-24-8
prokMSA_id:60382 Bacillaceae LA28 
prokMSA_id:63739 Bacillus pumilus isolate EI-44-7
prokMSA_id:63740 Bacillus pumilus isolate EI-31-12
prokMSA_id:63741 Bacillus pumilus isolate EI-26-8
prokMSA_id:63743 Bacillus pumilus isolate EI-25-8
prokMSA_id:63747 Bacillus pumilus isolate EI-24-10
prokMSA_id:64988 Bacillus pumilus 
prokMSA_id:78259 Bacillus pumilus 
prokMSA_id:78969 Bacillus sp. 71a 
2.30.7.11.4.3802 OTU 10 seqs
prokMSA_id:14702 Bacillus pumilus str. OM-F6
prokMSA_id:19779 Bacillus pumilus strain KL-052 
prokMSA_id:23057 Hailaer soda lake Z6 
prokMSA_id:39910 Bacillus sp. 19499 
prokMSA_id:63744 Bacillus pumilus isolate EI-26-5
prokMSA_id:77426 Bacillus pumilus 
prokMSA_id:77484 Bacillus pumilus 
prokMSA_id:77556 Bacillus pumilus 
prokMSA_id:82672 Bacillus pumilus strain WN694 
prokMSA_id:86314 Bacillus pumilus strain WN691 
2.30.7.11.4.3873 OTU 1 seq
prokMSA_id:47807 Bacillus sp. VAN22 
2.30.7.11.5 B.SUBTILIS_SUBGROUP 157 seqs
2.30.7.11.5.3273 OTU 1 seq
prokMSA_id:14757 Bacillus subtilis str. A405
2.30.7.11.5.3328 OTU 16 seqs
prokMSA_id:14725 Bacillus licheniformis str. Carlsberg strain NCIMB 6816. AF0
prokMSA_id:14726 Bacillus licheniformis str. North Carolina isolate PWD-1. AF
prokMSA_id:22295 Bacillus sp. strain TGS850
prokMSA_id:23316 Bacillus licheniformis strain TRC-18-2-a AF047176
prokMSA_id:28540 Pseudobacillus carolinae 
prokMSA_id:29493 Bacillus sp. NW-Sp3AS AF333556
prokMSA_id:32682 Bacillus licheniformis strain FO-037 
prokMSA_id:39451 Bacillus licheniformis strain FO-022a 
prokMSA_id:39932 Bacillus licheniformis strain ATCC 53757 AF204163
prokMSA_id:44403 Bacillus licheniformis strain FO-003 
prokMSA_id:45947 Bacillus sp. NW-Sp3Y AF333558
prokMSA_id:51205 Bacillus sp. VAN04 
prokMSA_id:51297 Bacillus licheniformis strain NCIMB 10689 AF204165
prokMSA_id:74705 Bacillus licheniformis strain ATCC 12759 AF204164
prokMSA_id:91855 clone W1A-D12 AY345521
prokMSA_id:96121 Bacillus licheniformis strain BCH290703B AY380831
2.30.7.11.5.3370 OTU 1 seq
prokMSA_id:46318 Bacillus sp. strain TGS437
2.30.7.11.5.3385 OTU 1 seq
prokMSA_id:77320 Bacillus licheniformis strain SAFN-031 
2.30.7.11.5.3430 OTU 1 seq
prokMSA_id:84164 Bacillus licheniformis strain A1 
2.30.7.11.5.3491 OTU 2 seqs
prokMSA_id:34421 Bacillus sp. PL-30 
prokMSA_id:74659 Bacillus sp. MB-12 
2.30.7.11.5.3492 OTU 21 seqs
prokMSA_id:14718 Bacillus subtilis str. 168
prokMSA_id:14719 Bacillus subtilis =
prokMSA_id:14740 Bacillus subtilis =rrnO
prokMSA_id:14756 Bacillus subtilis subsp. spizizenii NRRL B-23049
prokMSA_id:14758 Bacillus subtilis str. PY79
prokMSA_id:14759 Bacillus subtilis str. OG-01-center
prokMSA_id:14760 Bacillus subtilis ATCC 6633
prokMSA_id:14761 Bacillus subtilis str. BS62
prokMSA_id:17774 Bacillus subtilis strain N10 
prokMSA_id:38003 Bacillus subtilis strain KL-077 
prokMSA_id:52508 Bacillus licheniformis strain KL-164 
prokMSA_id:63981 Bacillus subtilis 
prokMSA_id:73711 Bacillus subtilis complete 
prokMSA_id:74972 Bacillus subtilis strain BZ15 
prokMSA_id:76151 Bacillus subtilis strain BHP6-1 
prokMSA_id:76500 Bacillus subtilis strain GA1-5 
prokMSA_id:76539 Bacillus subtilis strain STB29 
prokMSA_id:76813 Bacillus subtilis strain WP1-21 
prokMSA_id:76920 Bacillus subtilis strain HAZ2 
prokMSA_id:83961 Bacillus subtilis 
prokMSA_id:84840 Bacillus subtilis strain WN696 
2.30.7.11.5.3579 OTU 1 seq
prokMSA_id:33993 Bacillus sp. strain TGS750
2.30.7.11.5.3606 OTU 1 seq
prokMSA_id:32808 Bacillus subtilis A202 
2.30.7.11.5.3627 OTU 2 seqs
prokMSA_id:14750 Paenibacillus lautus NCIMB 12780. X60621
prokMSA_id:38338 Bacillus licheniformis strain SK-1 
2.30.7.11.5.3659 OTU 6 seqs
prokMSA_id:23159 Bacillus sp. PL-21 
prokMSA_id:68788 Bacillus marisflavi strain TF-11 
prokMSA_id:69296 Bacillus sp. AS-38 
prokMSA_id:79525 Bacillus sp. JC1076 
prokMSA_id:82070 Bacillus sp. CR1-2 
prokMSA_id:94703 Bacillus sp. w5 AY373362
2.30.7.11.5.3656 OTU 1 seq
prokMSA_id:69913 Bacillus licheniformis 
2.30.7.11.5.3675 OTU 1 seq
prokMSA_id:79819 Bacillus mojavensis 
2.30.7.11.5.3706 OTU 1 seq
prokMSA_id:30966 Bacillus sonorensis strain NRRL B-23155 
2.30.7.11.5.3727 OTU 1 seq
prokMSA_id:46107 Bacillus sp. strain TGS950
2.30.7.11.5.3818 OTU 6 seqs
prokMSA_id:35852 Bacillus licheniformis strain KL-176 
prokMSA_id:50052 Bacillus licheniformis strain EI-34-6
prokMSA_id:56458 Bacillus licheniformis AB111114 
prokMSA_id:75073 Bacillus licheniformis strain HAZ6-17 
prokMSA_id:75819 Bacillus licheniformis strain GA1-17 
prokMSA_id:77543 Bacillus licheniformis strain Mo1 
2.30.7.11.5.3820 OTU 1 seq
prokMSA_id:40827 Bacillus subtilis strain KL-120 
2.30.7.11.5.3831 OTU 1 seq
prokMSA_id:36125 Bacillus licheniformis strain KL-068 
2.30.7.11.5.3900 OTU 49 seqs
prokMSA_id:14700 Bacillus sp. IFO 12605
prokMSA_id:14706 Bacillus Biosubtyl str. Biosubtyl
prokMSA_id:14716 Bacillus amyloliquefaciens ATCC 23350 . X60605
prokMSA_id:14721 Bacillus licheniformis DSM 13
prokMSA_id:14723 Bacillus sp. str. Termite isolate v
prokMSA_id:14724 Bacillus sp. str. GCB-2
prokMSA_id:14746 Bacillus subtilis str. TB11
prokMSA_id:17839 Bacillus subtilis strain LN002 
prokMSA_id:17874 Bacillus subtilis strain Lactipan AJ277905
prokMSA_id:20533 Bacillus licheniformis strain FO-024 
prokMSA_id:20987 Bacillus licheniformis strain FO-026 
prokMSA_id:22715 Bacillus sonorensis strain NRRL B-23161 
prokMSA_id:25728 Bacillus sonorensis strain NNRL B-23159 
prokMSA_id:28357 Bacillus licheniformis strain KL-185 
prokMSA_id:29247 Bacillus sonorensis strain NRRL B-23154 
prokMSA_id:30814 Bacillus sonorensis strain NRRL B-23156 
prokMSA_id:31469 Bacillus licheniformis strain FO-054 AF234857
prokMSA_id:32902 Bacillus subtilis A184 
prokMSA_id:33178 Bacillus subtilis strain FO-029a 
prokMSA_id:34060 Bacillus sp. USC13 complete 
prokMSA_id:34751 Bacillus sonorensis strain NRRL B-23160 
prokMSA_id:35577 Bacillus licheniformis strain FO-085 
prokMSA_id:36519 Bacillus licheniformis strain KL-047 
prokMSA_id:38139 Bacillus licheniformis strain PR-1 
prokMSA_id:38198 Bacillus licheniformis strain KL-196 
prokMSA_id:39670 Bacillus sonorensis strain NRRL B-23157 
prokMSA_id:40513 Bacillus licheniformis 
prokMSA_id:41068 Bacillus pumilus strain FO-036b 
prokMSA_id:41451 pPD8 
prokMSA_id:41964 Bacillus sonorensis strain NRRL B-23158 
prokMSA_id:42423 Bacillus licheniformis strain FO-028 
prokMSA_id:42774 Bacillus subtilis strain FO-032 
prokMSA_id:44878 Bacillus licheniformis strain FO-074b 
prokMSA_id:45034 Bacillus subtilis 
prokMSA_id:45517 Bacillus licheniformis 
prokMSA_id:45582 Bacillus sp. strain TGS1050
prokMSA_id:46335 Bacillus mojavensis strain KL-154 
prokMSA_id:46379 Bacillus licheniformis strain B 
prokMSA_id:53195 Bacillus licheniformis strain FO-017b 
prokMSA_id:55519 Bacillus sp. CGTase complete 
prokMSA_id:58334 Bacillus licheniformis 
prokMSA_id:60365 Bacillaceae PH32 
prokMSA_id:64682 Bacillus licheniformis strain YW1258 
prokMSA_id:71867 Bacillus sp. FO-035b 
prokMSA_id:73877 Bacillus licheniformis strain KL-182 
prokMSA_id:76502 Bacillus subtilis strain MA12 
prokMSA_id:77146 Bacillus licheniformis strain GA8 
prokMSA_id:87398 Bacillus subtilis strain HA401 AY279207
prokMSA_id:94223 Bacillus subtilis AF545570
2.30.7.11.5.3909 OTU 34 seqs
prokMSA_id:14720 Bacillus subtilis str. OG-01-fringe
prokMSA_id:14731 Bacillus subtilis str. 168 =
prokMSA_id:14732 Bacillus subtilis =rrnJ
prokMSA_id:14734 Bacillus sp. str. SSA3
prokMSA_id:14741 Bacillus sp. str. PM3
prokMSA_id:14742 Bacillus sp. str. SS7
prokMSA_id:14743 Bacillus sp. str. SS9
prokMSA_id:14744 Bacillus sp. str. TKSP21
prokMSA_id:14745 Bacillus sp. str. TKSP24
prokMSA_id:14747 Bacillus subtilis ATCC 9799
prokMSA_id:14748 Bacillus subtilis ATCC 21331
prokMSA_id:14749 Bacillus subtilis str. 168 =rrnJ
prokMSA_id:14751 Bacillus subtilis str. 168 =rrnO
prokMSA_id:24519 Bacillus sp. YNPRH8P-2 
prokMSA_id:25248 Bacillus mojavensis 
prokMSA_id:28010 Bacillus vallismortis 
prokMSA_id:31397 Bacillus subtilis 
prokMSA_id:36092 Bacillus subtilis var. chungkookjang complete 
prokMSA_id:38471 Bacillus sp. PP19-H3 
prokMSA_id:43444 Bacillus atrophaeus 
prokMSA_id:50400 Bacillus subtilis strain O9 
prokMSA_id:62519 Bacillus subtilis subsp. endophyticus 
prokMSA_id:68699 Bacillus amyloliquefaciens strain CMB01 
prokMSA_id:68752 Glacial ice G200-SD1 
prokMSA_id:72314 Bacillus sp. Bch1 complete 
prokMSA_id:74771 Bacillus sp. BBK-1 
prokMSA_id:76767 Bacillus subtilis strain HAZ14 
prokMSA_id:77829 Bacillus subtilis isolate BS-1 
prokMSA_id:78407 Bacillus subtilis isolate BS-2 
prokMSA_id:78621 Bacillus sp. X3 
prokMSA_id:78627 Bacillus subtilis strain HJ19 
prokMSA_id:78954 Bacillus subtilis strain HJ11 
prokMSA_id:80904 Bacillus sp. B-6 
prokMSA_id:84380 Bacillus sp. B1XC 
2.30.7.11.5.3918 OTU 9 seqs
prokMSA_id:14727 Bacillus subtilis NCDO 1769
prokMSA_id:14735 Bacillus subtilis =rrnG
prokMSA_id:49632 Bacillus sp. clone KL-37-1-5 
prokMSA_id:57756 Bacillus subtilis and -23S intergenic spacer complete ; and 
prokMSA_id:77901 Bacillus sp. TUT1010 
prokMSA_id:78577 Bacillus subtilis strain B2 
prokMSA_id:80665 Bacillus sp. B-2 
prokMSA_id:84256 Bacillus subtilis strain IBT015 
prokMSA_id:91214 Bacillus subtilis strain:KT1002 AB115958
2.30.7.12 STAPHYLOCOCCUS_GROUP 415 seqs
2.30.7.12.1 STAPHYLOCOCCUS_SUBGROUP 110 seqs
2.30.7.12.1.3258 OTU 6 seqs
prokMSA_id:14763 Staphylococcus auricularis str. WK811M ATCC 33753
prokMSA_id:14785 Staphylococcus auricularis str. WK811M MAFF 911484
prokMSA_id:23774 Staphylococcus capitis 
prokMSA_id:64566 Staphylococcus sp. clone Gsetzeri3 
prokMSA_id:64567 Staphylococcus sp. clone Gexpansis24 
prokMSA_id:77340 Staphylococcus epidermidis strain SAFR-016 
2.30.7.12.1.3284 OTU 1 seq
prokMSA_id:14869 Staphylococcus sp. str. 05-41
2.30.7.12.1.3449 OTU 1 seq
prokMSA_id:37919 CCUG 42722T 
2.30.7.12.1.3545 OTU 6 seqs
prokMSA_id:14784 str. HTA563
prokMSA_id:14817 Staphylococcus epidermidis
prokMSA_id:14891 Staphylococcus epidermidis
prokMSA_id:48424 Staphylococcus epidermidis strain JPL-7 
prokMSA_id:64554 Staphylococcus sp. clone Gexpansis25 
prokMSA_id:77574 Staphylococcus epidermidis ATCC 12228 section 7 of 9 of the 
2.30.7.12.1.3569 OTU 8 seqs
prokMSA_id:14762 Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305
prokMSA_id:14823 Staphylococcus xylosus MAFF 911482
prokMSA_id:63475 Staphylococcus sp. RA90 
prokMSA_id:64738 Staphylococcus xylosus 
prokMSA_id:78763 Staphylococcus cohnii strain PLC-9 
prokMSA_id:80662 Arctic sea ice bacterum ARK9973 
prokMSA_id:91071 G24 AY345395
prokMSA_id:93337 Staphylococcus sp. An21 isolate An21 AJ551159
2.30.7.12.1.3585 OTU 2 seqs
prokMSA_id:23434 Staphylococcus sp. ALE-3 5'- 
prokMSA_id:25754 Staphylococcus sp. ALE-3 
2.30.7.12.1.3592 OTU 1 seq
prokMSA_id:14862 Staphylococcus caprae DSM 20608
2.30.7.12.1.3605 OTU 6 seqs
prokMSA_id:14828 Staphylococcus arlettae str. BP47 ATCC 43957
prokMSA_id:14901 Staphylococcus gallinarum str. VIII1 ATCC 35539
prokMSA_id:64557 Staphylococcus sp. clone 87-8 
prokMSA_id:64564 Staphylococcus sp. clone 87-5 
prokMSA_id:64565 Staphylococcus sp. clone 87-10 
prokMSA_id:79759 Staphylococcus sp. B-3 
2.30.7.12.1.3628 OTU 28 seqs
prokMSA_id:14765 Staphylococcus pasteuri ATCC 51129
prokMSA_id:14771 Staphylococcus haemolyticus ATCC 29970
prokMSA_id:14786 Staphylococcus equorum ATCC 43958
prokMSA_id:14811 unnamed organism
prokMSA_id:14814 Staphylococcus warneri ATCC 27836
prokMSA_id:14816 str. 2e
prokMSA_id:14818 Staphylococcus hominis subsp. hominis ATCC 27844
prokMSA_id:14831 Staphylococcus kloosii str. SC210 ATCC 43959
prokMSA_id:14836 Staphylococcus hominis subsp. hominis ATCC 27844
prokMSA_id:14837 Staphylococcus sp. str. 1F-09
prokMSA_id:14857 Staphylococcus haemolyticus ATCC 29970
prokMSA_id:14859 Staphylococcus lugdunensis str. N860297 ATCC 43809
prokMSA_id:14864 Staphylococcus haemolyticus MAFF 911476
prokMSA_id:14867 Staphylococcus sp. str. 1F-23
prokMSA_id:14877 Staphylococcus saprophyticus subsp. saprophyticus str. NT75 
prokMSA_id:14878 Staphylococcus pasteuri ATCC 51129
prokMSA_id:14893 Staphylococcus cohnii subsp. urealyticum str. CK27 ATCC 4933
prokMSA_id:29754 Staphylococcus sp. LMG 21006 strain LMG 21006
prokMSA_id:40009 Psychrophilic marine PS35 complete 
prokMSA_id:41763 Staphylococcus hominis strain JPL-5 
prokMSA_id:52769 Staphylococcus sp. strain LMG-19417
prokMSA_id:62644 Staphylococcus linens 
prokMSA_id:64558 Staphylococcus sp. clone bottae4 
prokMSA_id:64562 Staphylococcus sp. clone Gexpansis9 
prokMSA_id:74413 Human oral C20 
prokMSA_id:77345 Staphylococcus hominis strain SAFN-038 
prokMSA_id:78094 Staphylococcus nepalensis strain CW1T
prokMSA_id:78674 Staphylococcus sp. 9:4 isolate 9:4 1538BP
2.30.7.12.1.3638 OTU 1 seq
prokMSA_id:14824 Staphylococcus sp. str. AG-30
2.30.7.12.1.3654 OTU 1 seq
prokMSA_id:26685 Staphylococcus sp. B3117 
2.30.7.12.1.3684 OTU 35 seqs
prokMSA_id:14764 Staphylococcus chromogenes str. 1462 MAFF 911474
prokMSA_id:14767 Staphylococcus lentus str. K21 MAFF 911385
prokMSA_id:14768 Staphylococcus simulans str. MK 148 MAFF 910161
prokMSA_id:14779 Staphylococcus piscifermentans ATCC 51136
prokMSA_id:14782 Staphylococcus piscifermentans str. PU-87. Y15753
prokMSA_id:14790 Staphylococcus #2 from Psoroptes ovis
prokMSA_id:14806 Staphylococcus schleiferi subsp. coagulans str. GA211 ATCC 4
prokMSA_id:14807 Staphylococcus schleiferi str. CD22-1
prokMSA_id:14830 Staphylococcus carnosus subsp. carnosus ATCC 51365
prokMSA_id:14834 Staphylococcus muscae str. MB4 CCM 4175
prokMSA_id:14843 Staphylococcus schleiferi subsp. schleiferi DSM 4807
prokMSA_id:14844 Staphylococcus vitulinus str. DD 756 ATCC 51145
prokMSA_id:14872 Staphylococcus delphini str. Heidy ATCC 49171
prokMSA_id:14879 Staphylococcus pulvereri ATCC 51698
prokMSA_id:14880 Staphylococcus sciuri ATCC 20345
prokMSA_id:14881 unnamed organism
prokMSA_id:14892 Staphylococcus intermedius str. H11 MAFF 911388
prokMSA_id:14894 Staphylococcus condimenti str. F-2 DSM 11674
prokMSA_id:14895 Staphylococcus piscifermentans NRIC 1818
prokMSA_id:14897 Staphylococcus lutrae
prokMSA_id:14898 Staphylococcus felis str. GD521 ATCC 49168
prokMSA_id:14899 Staphylococcus felis str. FD21-2
prokMSA_id:14900 Staphylococcus schleiferi subsp. schleiferi DSM 4807
prokMSA_id:34155 Staphylococcus sciuri subsp. sciuri strain DSM 20345T
prokMSA_id:64575 Staphylococcus sp. clone Tminor30 
prokMSA_id:64577 Staphylococcus sp. clone Tminor17 
prokMSA_id:64578 Staphylococcus sp. clone Tminor25 
prokMSA_id:64579 Staphylococcus sp. clone Tminor27 
prokMSA_id:64580 Staphylococcus sp. clone Tminor19 
prokMSA_id:64581 Staphylococcus sp. clone Tminor24 
prokMSA_id:70830 soil clone 240-1 
prokMSA_id:74274 Staphylococcus sp
prokMSA_id:77128 Swine manure RT-22 
prokMSA_id:91092 Staphylococcus sciuri strain:T131 AB116135
prokMSA_id:97108 Staphylococcus lentus AY395014
2.30.7.12.1.3770 OTU 1 seq
prokMSA_id:14903 Spirochaeta sp. str. HIS Oman N26
2.30.7.12.1.3794 OTU 6 seqs
prokMSA_id:14783 Staphylococcus epidermidis ATCC 14990
prokMSA_id:14795 Staphylococcus epidermidis ATCC 14990
prokMSA_id:21287 clone p-888-a5 
prokMSA_id:42583 Staphylococcus epidermidis strain KL-004 
prokMSA_id:77410 Staphylococcus epidermidis ATCC 12228 section 8 of 9 of the 
prokMSA_id:77465 Staphylococcus epidermidis strain SAFN-039 
2.30.7.12.1.3822 OTU 7 seqs
prokMSA_id:14808 Staphylococcus succinus str. AMG-D1 ATCC 700337
prokMSA_id:14809 Staphylococcus succinus str. AMG-D2
prokMSA_id:21472 Staphylococcus succinus strain SB72
prokMSA_id:64553 Staphylococcus sp. clone bottae10 
prokMSA_id:64555 Staphylococcus sp. clone 87-7 
prokMSA_id:64560 Staphylococcus sp. clone bottae5 
prokMSA_id:64568 Staphylococcus sp. clone Ggeomydis17 
2.30.7.12.2 MAC.CASEOLYTICUS_SUBGROUP 13 seqs
2.30.7.12.2.3494 OTU 3 seqs
prokMSA_id:14905 Macrococcus caseolyticus str. DD 4508 ATCC 13548
prokMSA_id:14910 Macrococcus caseolyticus str. DD 4508 MAFF 911387
prokMSA_id:61797 Micrococcus luteus 
2.30.7.12.2.3602 OTU 1 seq
prokMSA_id:65687 soil clone C065 
2.30.7.12.2.3771 OTU 1 seq
prokMSA_id:14906 clone K20-12
2.30.7.12.2.3772 OTU 1 seq
prokMSA_id:14907 clone CLEAR-31
2.30.7.12.2.3865 OTU 7 seqs
prokMSA_id:14908 Macrococcus bovicus str. L2F4
prokMSA_id:14911 Macrococcus equipercicus str. H8h3
prokMSA_id:14912 Macrococcus carouselicus str. H8b16
prokMSA_id:55999 Macrococcus brunensis complete 
prokMSA_id:64393 Macrococcus lamae complete 
prokMSA_id:64394 Macrococcus unicus complete 
prokMSA_id:89445 Macrococcus equipercicus clone 30Y AJ576067
2.30.7.12.3 GEM.HAEMOLYSANS_SUBGROUP 21 seqs
2.30.7.12.3.3292 OTU 2 seqs
prokMSA_id:14913 Salinicoccus roseus DSM 5351
prokMSA_id:31771 Salinicoccus roseus 
2.30.7.12.3.3432 OTU 1 seq
prokMSA_id:80961 Marine P_wp0225 
2.30.7.12.3.3486 OTU 1 seq
prokMSA_id:26423 Salinicoccus hispanicus 
2.30.7.12.3.3524 OTU 7 seqs
prokMSA_id:14914 Gemella morbillorum ATCC 27824
prokMSA_id:14916 Gemella 933-88 str. 933-88
prokMSA_id:14918 Gemella haemolysans ATCC 10379
prokMSA_id:14922 Gemella sanguinis str. 2045-94 CCUG 37820
prokMSA_id:14923 Gemella haemolysans ATCC 10379 . M58799
prokMSA_id:50458 Gemella sp. oral strain C24KA 
prokMSA_id:76927 Gemella haemolysans clone S15A-MN66
2.30.7.12.3.3613 OTU 1 seq
prokMSA_id:37750 Hailaer soda lake T8 
2.30.7.12.3.3648 OTU 1 seq
prokMSA_id:45265 Gemella sp. M60449/99/1 T 
2.30.7.12.3.3673 OTU 3 seqs
prokMSA_id:28012 Jeotgalibacillus psychrophilus 
prokMSA_id:36078 clone GL178.18 
prokMSA_id:44574 Jeotgalibacillus halotolerans 
2.30.7.12.3.3724 OTU 3 seqs
prokMSA_id:14915 Gemella 1754-94 str. 1754-94
prokMSA_id:14920 Gemella 617-93 str. 617-93
prokMSA_id:52225 Gemella sp. oral strain A31SC 
2.30.7.12.3.3804 OTU 1 seq
prokMSA_id:14917 str. 70.i
2.30.7.12.3.3807 OTU 1 seq
prokMSA_id:14919 clone EKHO-4
2.30.7.12.4 B.CEREUS_SUBGROUP 271 seqs
2.30.7.12.4.3262 OTU 267 seqs
prokMSA_id:14925 Bacillus anthracis str. Sterne. X55059
prokMSA_id:14926 Bacillus cereus str. F4810/72 NCTC 11143. X55063
prokMSA_id:14927 Bacillus cereus NCDO 1771 . X55060
prokMSA_id:14928 Bacillus cereus IAM 12605 . D16266
prokMSA_id:14929 Bacillus cereus str. WSBC10030. Z84575
prokMSA_id:14930 Bacillus cereus str. WSBC10037
prokMSA_id:14931 Bacillus cereus str. WSBC10201
prokMSA_id:14932 Bacillus cereus str. WSBC10204
prokMSA_id:14933 Bacillus cereus str. WSBC10206. Z84579
prokMSA_id:14934 Bacillus cereus str. WSBC10210
prokMSA_id:14935 Bacillus cereus ATCC 27877
prokMSA_id:14936 Bacillus cereus str. WSBC10030
prokMSA_id:14937 Bacillus thuringiensis str. WS2623
prokMSA_id:14938 Bacillus mycoides str. MWS5303-1-4. Z84582
prokMSA_id:14939 Bacillus mycoides str. MWS5303-2-51
prokMSA_id:14940 Bacillus thuringiensis str. WS 261. Z84584
prokMSA_id:14941 Bacillus thuringiensis str. WS 2617. Z84585
prokMSA_id:14942 Bacillus thuringiensis str. WS 2618. Z84586
prokMSA_id:14943 Bacillus thuringiensis str. WS 2625
prokMSA_id:14944 Bacillus thuringiensis str. WS 2626
prokMSA_id:14945 Bacillus cereus str. WSBC10030
prokMSA_id:14946 Bacillus mycoides str. MWS5303-1-4
prokMSA_id:14947 Bacillus thuringiensis str. WS 2614
prokMSA_id:14948 Bacillus thuringiensis str. WS 2617
prokMSA_id:14949 Bacillus mycoides str. DRC1
prokMSA_id:14950 str. sp6
prokMSA_id:14951 Bacillus pseudomycoides. AF013121
prokMSA_id:14952 Bacillus sp. str. JJ#1
prokMSA_id:14955 Bacillus cereus. AF076031
prokMSA_id:14956 str. HTA484
prokMSA_id:14957 Bacillus BSID723 str. BSID723
prokMSA_id:16497 Bacillus sp. AH 678 AF290561
prokMSA_id:17205 Bacillus sp. YSS/2001-3 
prokMSA_id:18433 Bacillus mycoides AB021192
prokMSA_id:19663 Bacillus cereus strain ATCC11778 AF290546
prokMSA_id:20169 Bacillus anthracis strain W-21 AF390088
prokMSA_id:20900 Bacillus sp. AH 628 AF290558
prokMSA_id:22695 Bacillus sp. AH 526 AF290562
prokMSA_id:24287 Bacillus cereus strain ATCC31293 AF290548
prokMSA_id:24784 Bacillus sp. CMB03 
prokMSA_id:25241 Bacillus cereus strain AH 521 AF290554
prokMSA_id:25668 Bacillus cereus 
prokMSA_id:25780 Bacillus sp. 82344 AF227848
prokMSA_id:25802 Bacillus anthracis AF176321
prokMSA_id:25927 Earthworm burrow B36D1 AY039397
prokMSA_id:26368 Bacillus weihenstephanensis AB021199
prokMSA_id:26371 Bacillus anthracis strain Delta Ames AF155951
prokMSA_id:28455 Bacillus sp. F26 AF385082
prokMSA_id:28561 Bacillus cereus strain S-5 
prokMSA_id:28652 Bacillus anthracis strain Ames AF155950
prokMSA_id:30444 Low G+C Gram-positive D-Su1-21B 
prokMSA_id:30826 Bacillus cereus isolate Ki 2l
prokMSA_id:31673 Bacillus cereus AF176322
prokMSA_id:34617 Bacillus cereus AF274244
prokMSA_id:35163 Bacillus mycoides strain 10206 AF155957
prokMSA_id:35362 Bacillus anthracis AY043083
prokMSA_id:35737 Bacillus sp. P16 AY048782
prokMSA_id:35857 Bacillus thuringiensis strain 4042 AF155953
prokMSA_id:36427 CCAJG117 
prokMSA_id:37153 Bacillus cereus strain ATCC14579 AF290547
prokMSA_id:38172 Earthworm cast C19D1 AY039403
prokMSA_id:38433 Bacillus sp. LMG 20247 strain LMG 20247 AJ316312
prokMSA_id:38821 Marine SIMO-IS120 AF460884
prokMSA_id:39453 Bacillus mycoides 
prokMSA_id:39601 Bacillus sp. AH 665 AF290560
prokMSA_id:40803 Bacillus thuringiensis strain DM55 AF393658
prokMSA_id:44252 Bacillus sp. AH 648 AF290559
prokMSA_id:45153 Bacillus sp. KPU 0013 
prokMSA_id:45462 earthworm cast clone C027 AY037682
prokMSA_id:46656 Bacillus thuringiensis strain B8 AF155955
prokMSA_id:47699 Bacillus cereus strain 9620 AF155952
prokMSA_id:52128 Bacillus mycoides strain 6462 AF155956
prokMSA_id:54066 Marine SE98 AY038926
prokMSA_id:55839 Glacial ice SB12K-9-4 
prokMSA_id:56041 Bacillus cereus 
prokMSA_id:56330 Bacillus sp. Lgg10.14 strain Lgg10.14 AJ489353
prokMSA_id:58975 Bacillus cereus strain 2000031503 AY138277
prokMSA_id:58976 Bacillus cereus strain 2000031513 
prokMSA_id:58977 Bacillus cereus strain G3317 AY138278
prokMSA_id:58978 Bacillus cereus strain 2000031498 AY138274
prokMSA_id:58979 Bacillus cereus strain LRN AY138275
prokMSA_id:58980 Bacillus cereus strain 2000031491 AY138276
prokMSA_id:59283 Bacillus cereus isolate MBRG 4.21 AJ508706
prokMSA_id:60008 Bacillus cereus strain AL1 AY129651
prokMSA_id:60367 Bacillaceae PH27B AF513473
prokMSA_id:60443 Bacillus sp. Fa25 AY131220
prokMSA_id:62451 Bacillus sp. FP1/2002 
prokMSA_id:63007 Bacillus cereus strain 83-5c rrn AF526899
prokMSA_id:63455 Bacillus cereus SH 01 
prokMSA_id:64004 Bacillus mycoides strain B10 AJ491827
prokMSA_id:64703 Bacillus sp. Lgg20.7 strain Lgg20.7 AJ489378
prokMSA_id:64712 Bacillus sp. Lgg15.5 strain Lgg15.5 AJ489361
prokMSA_id:64713 Bacillus sp. Lgg15.8 strain Lgg15.8 AJ489364
prokMSA_id:64714 Bacillus sp. Lgg15.4 strain Lgg15.4 AJ489360
prokMSA_id:64727 Bacillus sp. Lgg10.6 strain Lgg10.6 AJ489347
prokMSA_id:64730 Bacillus sp. Lgg5.10 strain Lgg5.10 AJ489340
prokMSA_id:66482 clone cvf70075 
prokMSA_id:66554 clone cvf65109 
prokMSA_id:67204 Bacillus sp. BacB11 AF497257
prokMSA_id:67209 Bacillus sp. BacB3 AF497249
prokMSA_id:67642 Bacillus sp. R-12866 AJ438304
prokMSA_id:67643 Bacillus sp. R-10947 AJ438300
prokMSA_id:68744 Glacial ice G50-TS3 AF479356
prokMSA_id:68769 Glacial ice G500K-2 AF479333
prokMSA_id:69776 Bacillus anthracis strain 2000031244 AY138354
prokMSA_id:69812 Bacillus anthracis strain 2002017150 AY138305
prokMSA_id:69819 Bacillus anthracis strain 2000032761 AY138322
prokMSA_id:69823 Bacillus anthracis strain AMES AY138358
prokMSA_id:69869 Bacillus anthracis strain 2002017085 AY138309
prokMSA_id:69870 Bacillus anthracis strain 2002007458 AY138328
prokMSA_id:69875 Bacillus anthracis strain 2000032600 AY138293
prokMSA_id:69902 Bacillus anthracis strain 2002007642 AY138315
prokMSA_id:69904 Bacillus anthracis strain 2000031657 AY138382
prokMSA_id:69928 Bacillus anthracis strain 2000031664 AY138383
prokMSA_id:69949 Bacillus anthracis strain 2000032601 AY138292
prokMSA_id:69963 Bacillus anthracis strain 2002007711 AY138302
prokMSA_id:70008 Bacillus cereus strain H1439 
prokMSA_id:70014 Bacillus anthracis strain 2002008815 AY138335
prokMSA_id:70084 Bacillus anthracis strain 2000031648 AY138296
prokMSA_id:70107 Bacillus cereus strain 2000031486 AY138272
prokMSA_id:70161 Bacillus cereus strain G9667 AY138273
prokMSA_id:70251 Bacillus anthracis strain 2000031652 AY138374
prokMSA_id:70252 Bacillus anthracis strain 2002007648 AY138341
prokMSA_id:70303 Bacillus anthracis strain 2000032763 AY138320
prokMSA_id:70317 Bacillus cereus strain ATCC43881 
prokMSA_id:70320 Bacillus anthracis strain 2000031661 AY138369
prokMSA_id:70515 Bacillus anthracis strain 2002008803 AY138339
prokMSA_id:70527 Bacillus thuringiensis strain 2002017401 AY138284
prokMSA_id:70554 Bacillus anthracis strain 2000031649 AY138295
prokMSA_id:70588 Bacillus anthracis strain 2001039387 AY138360
prokMSA_id:70620 Bacillus thuringiensis strain 2000031482 AY138290
prokMSA_id:70693 Bacillus anthracis strain 2000031666 AY138352
prokMSA_id:70696 Bacillus thuringiensis strain 2000031494 AY138288
prokMSA_id:70698 Bacillus anthracis strain 2002007712 AY138301
prokMSA_id:70757 Bacillus anthracis strain 2002007619 AY138318
prokMSA_id:70758 Bacillus anthracis strain 2000031368 AY138350
prokMSA_id:70771 Bacillus anthracis strain 2002008802 AY138330
prokMSA_id:70778 Bacillus thuringiensis strain ATCC33679 
prokMSA_id:70858 Bacillus anthracis strain 2002017157 AY138303
prokMSA_id:70886 Bacillus anthracis strain 2000032642 AY138365
prokMSA_id:70914 Bacillus anthracis strain 2000031659 AY138377
prokMSA_id:70973 Bacillus anthracis strain 2001039360 AY138361
prokMSA_id:71007 Bacillus anthracis strain 2000032710 AY138334
prokMSA_id:71141 Bacillus anthracis strain 2002017149 AY138306
prokMSA_id:71142 Bacillus anthracis strain 2000031662 AY138368
prokMSA_id:71161 Bacillus anthracis strain 2001039361 AY138362
prokMSA_id:71181 Bacillus anthracis strain 2000032708 AY138331
prokMSA_id:71325 Bacillus anthracis strain 2001039382 AY138359
prokMSA_id:71441 Bacillus anthracis strain 2000031667 AY138380
prokMSA_id:71443 Bacillus thuringiensis strain 2000031496 AY138287
prokMSA_id:71452 Bacillus anthracis strain 2000032760 AY138323
prokMSA_id:71460 Bacillus anthracis strain 2000031668 AY138299
prokMSA_id:71523 Bacillus anthracis strain 2002019185 AY138314
prokMSA_id:71582 Bacillus anthracis strain 2002008812 AY138329
prokMSA_id:71620 Bacillus anthracis strain 2000031136 AY138349
prokMSA_id:71730 Bacillus anthracis strain 2000031653 AY138373
prokMSA_id:71772 Bacillus anthracis strain 2002008813 AY138336
prokMSA_id:71839 Bacillus anthracis strain 2000032764 AY138319
prokMSA_id:71893 Bacillus anthracis strain 2000031259 AY138346
prokMSA_id:71914 Bacillus anthracis strain 2002007549 AY138343
prokMSA_id:71922 Bacillus anthracis strain 2000032762 AY138321
prokMSA_id:72016 Bacillus anthracis strain 200003b1887B AY138347
prokMSA_id:72035 Bacillus anthracis strain 2000032706 AY138338
prokMSA_id:72116 Bacillus anthracis strain 2000031665 AY138366
prokMSA_id:72121 Bacillus anthracis strain 2000031887 AY138348
prokMSA_id:72196 Bacillus thuringiensis strain 2000031509 AY138285
prokMSA_id:72243 Bacillus anthracis strain 2002007574 AY138363
prokMSA_id:72247 Bacillus anthracis strain 2002007459 AY138327
prokMSA_id:72254 Bacillus anthracis strain 2002017153 AY138304
prokMSA_id:72260 Bacillus anthracis strain 2002017084 AY138310
prokMSA_id:72365 Bacillus anthracis strain Vollum AF290553
prokMSA_id:72368 Bacillus anthracis strain 2000031670 AY138367
prokMSA_id:72393 Bacillus thuringiensis strain 2000032757 AY138280
prokMSA_id:72441 Bacillus anthracis strain 2000031650 AY138379
prokMSA_id:72470 Bacillus anthracis strain 2002019002 AY138312
prokMSA_id:72526 Bacillus anthracis strain 2002007649 AY138357
prokMSA_id:72615 Bacillus thuringiensis strain 2000032755 AY138282
prokMSA_id:72680 Bacillus thuringiensis strain 2000031485 AY138289
prokMSA_id:72712 Bacillus anthracis strain 2000031076 AY138353
prokMSA_id:72756 Bacillus anthracis strain 2002008805 AY138337
prokMSA_id:72810 Bacillus thuringiensis strain 2000031508 AY138286
prokMSA_id:72920 Bacillus anthracis strain 2002007620 AY138317
prokMSA_id:72972 Bacillus anthracis strain 2002007488 AY138342
prokMSA_id:73036 Bacillus anthracis strain 2000031075 AY138345
prokMSA_id:73059 Bacillus thuringiensis strain 2002007400 AY138283
prokMSA_id:73089 Bacillus anthracis strain 2002019187 AY138313
prokMSA_id:73102 Bacillus anthracis strain 2000031671 AY138370
prokMSA_id:73113 Bacillus anthracis strain 2002019003 AY138308
prokMSA_id:73214 Bacillus anthracis strain 2000031658 AY138297
prokMSA_id:73336 Bacillus anthracis strain 2002017091 AY138311
prokMSA_id:73337 Bacillus anthracis strain 2000032711 AY138333
prokMSA_id:73434 Bacillus anthracis strain 2000031656 AY138375
prokMSA_id:73444 Bacillus anthracis strain 2000031651 AY138372
prokMSA_id:73565 Bacillus thuringiensis strain 2000032756 AY138281
prokMSA_id:73585 Bacillus anthracis strain 2002705969 AY138364
prokMSA_id:73697 Bacillus anthracis strain 2000031078 AY138351
prokMSA_id:73705 Bacillus anthracis strain 2002007621 AY138316
prokMSA_id:73765 Bacillus anthracis strain 2002007015 AY138340
prokMSA_id:73784 Bacillus anthracis strain 2000031663 AY138381
prokMSA_id:73801 Bacillus anthracis strain 2000031669 AY138298
prokMSA_id:73889 Bacillus anthracis strain 2002007582 AY138324
prokMSA_id:73992 Bacillus anthracis strain 2000031666 AY138371
prokMSA_id:74004 Bacillus anthracis strain 2001039370 AY138291
prokMSA_id:74018 Bacillus anthracis strain 2000031660 AY138378
prokMSA_id:74030 Bacillus anthracis strain 2002007460 AY138326
prokMSA_id:74064 Bacillus anthracis strain Sterne 
prokMSA_id:74110 Bacillus anthracis strain 2000032707 AY138332
prokMSA_id:74123 Bacillus anthracis strain 2000031782 AY138294
prokMSA_id:74146 Bacillus anthracis strain 2002017090 AY138307
prokMSA_id:74200 Bacillus anthracis strain 2002007650 AY138356
prokMSA_id:74273 Bacillus anthracis strain 2000031655 AY138376
prokMSA_id:74303 Bacillus anthracis strain 2002007651 AY138355
prokMSA_id:74309 Bacillus anthracis strain 2000031654 AY138300
prokMSA_id:74324 Bacillus anthracis strain 2002007547 AY138344
prokMSA_id:74425 Bacillus anthracis strain 2002007581 AY138325
prokMSA_id:75154 Bacillus mycoides strain MH48 AJ318901
prokMSA_id:77351 Bacillus thuringiensis AY170457
prokMSA_id:77357 Bacillus thuringiensis strain SAFN-003 
prokMSA_id:77415 Bacillus megaterium strain SAFN-017 
prokMSA_id:77709 Bacillus sp. 98TH11323 AY159882
prokMSA_id:78536 Bacillus sp. DW137 isolate DW137 AJ534864
prokMSA_id:78682 Bacillus cereus strain HJ20 
prokMSA_id:78746 Bacillus cereus isolate 1 583BP AJ536418
prokMSA_id:78840 Bacillus thuringiensis 
prokMSA_id:79142 Bacillus cereus strain A78
prokMSA_id:79578 clone AY13
prokMSA_id:79609 Bacillus sp. B-1 AY189746
prokMSA_id:82523 Bacillus cereus ATCC 14579 section 16 of 18 of the complete 
prokMSA_id:82718 Bacillus cereus ATCC 14579 complete genome NC_004722
prokMSA_id:83539 Bacillus sp. UST020129-022 
prokMSA_id:83594 Bacillus sp. MSB2054 AY275495
prokMSA_id:84080 Bacillus cereus ATCC 14579 section 1 of 18 of the complete g
prokMSA_id:84334 Bacillus sp. CJ11076 
prokMSA_id:85155 Bacillus cereus ATCC 14579 section 3 of 18 of the complete g
prokMSA_id:85177 Bacillus anthracis str. Ames section 1 of 18 of the complete
prokMSA_id:85366 Bacillus anthracis str. Ames complete genome NC_003997
prokMSA_id:86054 Bacillus sp. MSB2029 AY275494
prokMSA_id:86137 Bacillus anthracis str. Ames section 2 of 18 of the complete
prokMSA_id:86482 Bacillus anthracis str. Ames section 3 of 18 of the complete
prokMSA_id:86676 Bacillus cereus ATCC 14579 section 2 of 18 of the complete g
prokMSA_id:86702 Bacillus anthracis str. Ames section 16 of 18 of the complet
prokMSA_id:88453 Bacillus cereus strain RIVM BC00067 AJ577282
prokMSA_id:88521 Bacillus cereus strain J-1 AY305275
prokMSA_id:88623 Bacillus cereus strain B 412 AJ577281
prokMSA_id:88674 Bacillus cereus strain OH 599 AJ577286
prokMSA_id:88986 Bacillus cereus strain B 102 AJ577289
prokMSA_id:89137 Bacillus cereus strain F 3371/93 AJ577287
prokMSA_id:89200 Bacillus cereus strain B 319 AJ577285
prokMSA_id:89224 Bacillus cereus strain B 308 AJ577275
prokMSA_id:89369 Bacillus cereus strain ATCC 4342 AJ577288
prokMSA_id:89749 Bacillus cereus strain B 203 AJ577277
prokMSA_id:89896 Bacillus cereus strain ATCC 10987 AJ577290
prokMSA_id:89913 Bacillus cereus strain NS 58 AJ577274
prokMSA_id:90071 Bacillus cereus strain LKT 1/1 AJ577278
prokMSA_id:90341 Bacillus cereus strain LKT 1/2 AJ577284
prokMSA_id:90400 Bacillus cereus strain RIVM BC00068 AJ577283
prokMSA_id:90438 Bacillus cereus strain B 204 AJ577292
prokMSA_id:90565 Bacillus cereus strain F 528/94 AJ577291
prokMSA_id:90579 Bacillus anthracis strain NC08234-02 AJ578036
prokMSA_id:90668 Bacillus cereus strain F 5881/94 AJ577276
prokMSA_id:91393 H18 AY345553
prokMSA_id:91655 Bacillus anthracis strain:S51 AB116124
prokMSA_id:91694 K2-46 AY345416
prokMSA_id:91863 clone W4B-B03 AY345491
prokMSA_id:94646 Bacillus mycoides strain c2 AY373357
prokMSA_id:95498 Bacillus strain LMG 20364 AJ413201
prokMSA_id:96762 Bacillus sp. B913-2 AB114266
2.30.7.12.4.3378 OTU 1 seq
prokMSA_id:31586 Low G+C Gram-positive D-Su1-25 
2.30.7.12.4.3406 OTU 1 seq
prokMSA_id:40011 Bacillus thuringiensis isolate B73 
2.30.7.12.4.3467 OTU 1 seq
prokMSA_id:70144 Bacillus luciferensis strain LMG 18422
2.30.7.12.4.3655 OTU 1 seq
prokMSA_id:39946 Bacillus sp. FO-011 
2.30.7.13 B.SPHAERICUS_GROUP 147 seqs
2.30.7.13.1 B.SPHAERICUS_SUBGROUP 68 seqs
2.30.7.13.1.3527 OTU 1 seq
prokMSA_id:14988 Bacillus sphaericus str. BCA16
2.30.7.13.1.3583 OTU 38 seqs
prokMSA_id:14984 Bacillus sphaericus str. IAM 13420
prokMSA_id:14985 Bacillus fusiformis
prokMSA_id:18543 Bacillus sp. NRS-111 
prokMSA_id:20955 Bacillus sp. B-4297 
prokMSA_id:21252 Bacillus sp. NRS-1692 
prokMSA_id:21894 Bacillus sp. B-183 
prokMSA_id:22582 Bacillus sphaericus strain DSM 28
prokMSA_id:22934 Bacillus sp. NRS-719 
prokMSA_id:23206 Bacillus sp. NRS-800 
prokMSA_id:23764 Bacillus sp. BD-89 
prokMSA_id:25415 Bacillus sp. B-23269 
prokMSA_id:26107 Bacillus sp. NRS-810 
prokMSA_id:29002 Bacillus sp. BD-121 
prokMSA_id:30216 Bacillus sp. B-14957 
prokMSA_id:31069 Bacillus sphaericus 
prokMSA_id:31358 Bacillus sp. B-14905 
prokMSA_id:33671 Bacillus sp. BD-115 
prokMSA_id:33727 Bacillus sp. NRS-967 
prokMSA_id:36977 Bacillus sp. NRS-593 
prokMSA_id:38572 Bacillus sp. BD-117 
prokMSA_id:39763 Bacillus sp. NRS-752 
prokMSA_id:39794 Bacillus sp. BD-109 
prokMSA_id:41978 Bacillus sp. BD-95 
prokMSA_id:42176 Bacillus sp. BD-94 
prokMSA_id:44025 Bacillus sp. PAR5 
prokMSA_id:44036 Bacillus sp. ZYM complete 
prokMSA_id:47340 Bacillus sp. B-23287 
prokMSA_id:48387 Bacillus sp. BD-119 
prokMSA_id:50391 Bacillus sp. B-23280 
prokMSA_id:52279 Bacillus sp. BD-93 
prokMSA_id:62950 Bacillus sp. 34hs1 rrn 
prokMSA_id:67860 Bacillus sp. clone DGG30 
prokMSA_id:70175 Caryophanon sp. oral clone AV085 
prokMSA_id:71751 Bacillus sphaericus AF227842
prokMSA_id:72583 Bacillus sphaericus strain DSM 396 NTCC 9602
prokMSA_id:74854 Bacillus sp. BD-83 
prokMSA_id:78227 Bacillus sp. TUT1008 
prokMSA_id:85427 Bacillus sp. FRA000042 
2.30.7.13.1.3626 OTU 7 seqs
prokMSA_id:14976 Bacillus fusiformis ATCC 7055
prokMSA_id:14977 Bacillus sphaericus NRS 592
prokMSA_id:14978 Bacillus sphaericus str. 2362
prokMSA_id:14979 Bacillus sphaericus NRS 400
prokMSA_id:14980 Bacillus sphaericus NRS 1198
prokMSA_id:14981 Bacillus sphaericus str. 2297
prokMSA_id:14982 Bacillus sphaericus str. 1013 T. Gibson ATCC 14577
2.30.7.13.1.3843 OTU 5 seqs
prokMSA_id:19002 Bacillus sp. NRS-1186 
prokMSA_id:19225 Bacillus sp. NRS-250 
prokMSA_id:23256 Bacillus sp. B-1876 
prokMSA_id:34645 Bacillus sphaericus strain 205y 
prokMSA_id:36376 Bacillus sp. BD-113 
2.30.7.13.1.3860 OTU 17 seqs
prokMSA_id:16731 Bacillus sp. NRS-156 
prokMSA_id:19282 Bacillus sp. NRS-400 
prokMSA_id:19710 Bacillus sp. B-23286 
prokMSA_id:20757 Bacillus sp. B-23279 
prokMSA_id:25196 Bacillus sp. B-23288 
prokMSA_id:31780 Bacillus sp. NRS-732 
prokMSA_id:32927 Bacillus sp. B-23284 
prokMSA_id:34462 Bacillus sp. B-23282 
prokMSA_id:35652 Bacillus sp. B-14865 
prokMSA_id:39362 Bacillus sp. NRS-1223 
prokMSA_id:39772 Bacillus fusiformis strain DSM 2898T
prokMSA_id:41414 Bacillus sp. BD-111 
prokMSA_id:42508 Bacillus sp. NRS-866 
prokMSA_id:43479 Bacillus sp. NRS-718 
prokMSA_id:47760 Bacillus sp. B-23285 
prokMSA_id:49078 Bacillus fusiformis 
prokMSA_id:70299 Bacillus sphaericus strain B3
2.30.7.13.2 CRP.LATUM_SUBGROUP 13 seqs
2.30.7.13.2.3285 OTU 1 seq
prokMSA_id:64192 Caryophanon latum strain DSM 14151T
2.30.7.13.2.3304 OTU 2 seqs
prokMSA_id:14990 Bacillus silvestris str. HR3-23
prokMSA_id:71479 Caryophanon sp. oral clone AW086 
2.30.7.13.2.3489 OTU 5 seqs
prokMSA_id:55578 Bacillus sp. CPB 9 AF548880
prokMSA_id:77308 Bacillus silvestris strain SAFN-010 
prokMSA_id:77326 Sporosarcina aquimarina strain SAFN-008 
prokMSA_id:79018 Brevibacillus sp. PLC-3 AY161043
prokMSA_id:93730 Bacillus sp. KSM-9865 AB084263
2.30.7.13.2.3658 OTU 3 seqs
prokMSA_id:14993 Caryophanon tenue NCDO 2324
prokMSA_id:14994 Caryophanon latum NCIMB 9533
prokMSA_id:64190 Caryophanon tenue strain DSM 14152T
2.30.7.13.2.3784 OTU 1 seq
prokMSA_id:73669 soil clone 889-1 
2.30.7.13.2.3817 OTU 1 seq
prokMSA_id:14991 Caryophanon latum NCDO 2034
2.30.7.13.3 KUR.ZOPFII_SUBGROUP 7 seqs
2.30.7.13.3.3416 OTU 5 seqs
prokMSA_id:16706 Bacillus sp. NRS-1694 AF169534
prokMSA_id:22505 Bacillus sp. NRS-1693 AF169533
prokMSA_id:35115 Bacillus sp. BD-85 
prokMSA_id:39697 Bacillus sp. NRS-1691 AF169531
prokMSA_id:45761 Bacillus sp. NRS-1695 AF169535
2.30.7.13.3.3482 OTU 1 seq
prokMSA_id:60381 Bacillaceae LA38BB 
2.30.7.13.3.3778 OTU 1 seq
prokMSA_id:14997 Kurthia zopfii str. F64/100; K5 NCIMB 9878
2.30.7.13.4 B.THERMOSPHAERICUS_SUBGROUP 1 seq
2.30.7.13.4.3737 OTU 1 seq
prokMSA_id:15000 clone BURTON-37
2.30.7.13.5 B.INSOLITUS_SUBGROUP 1 seq
2.30.7.13.5.3739 OTU 1 seq
prokMSA_id:15002 str. B775
2.30.7.13.6 B.PSYCHROPHILUS_SUBGROUP 23 seqs
2.30.7.13.6.3333 OTU 1 seq
prokMSA_id:17599 Sporosarcina ureae 
2.30.7.13.6.3334 OTU 1 seq
prokMSA_id:15010 DA057 
2.30.7.13.6.3372 OTU 1 seq
prokMSA_id:25505 Bacillus hs2_43 
2.30.7.13.6.3514 OTU 1 seq
prokMSA_id:66290 Sporosarcina sp. LCSAOTU9 
2.30.7.13.6.3529 OTU 1 seq
prokMSA_id:47004 Bacillus aquamarinus 
2.30.7.13.6.3687 OTU 1 seq
prokMSA_id:77347 Filibacter limicola strain SAFN-012 
2.30.7.13.6.3707 OTU 12 seqs
prokMSA_id:15008 Bacillus globisporus str. W25 DSM 4
prokMSA_id:15012 Bacillus psychrophilus str. W16A ATCC 23304
prokMSA_id:15013 Bacillus psychrophilus str. W5 ATCC 23306. X54969
prokMSA_id:15014 Bacillus psychrophilus str. 82346
prokMSA_id:15015 Bacillus psychrophilus str. W16A IAM 12468
prokMSA_id:33293 Bacillus sp. ikaite c21 isolate ikaite21
prokMSA_id:39603 Bacillus sp. ikaite c1 isolate ikaite c1
prokMSA_id:43631 AF010009
prokMSA_id:45316 Bacillus sp. ikaite c5 isolate ikaite c5
prokMSA_id:48206 Bacillus sp. S4 AF260711
prokMSA_id:51589 Filibacter limicola strain DSM 13886T
prokMSA_id:86093 low G+C Gram-positive AY217505
2.30.7.13.6.3704 OTU 1 seq
prokMSA_id:57750 Bacillus sp. CPB 7 
2.30.7.13.6.3761 OTU 1 seq
prokMSA_id:15009 DA114 
2.30.7.13.6.3894 OTU 3 seqs
prokMSA_id:55403 Sporosarcina macmurdoensis strain CMS 21w
prokMSA_id:78989 Sporosarcina sp. 2216.15.2 
prokMSA_id:94088 firmicute clone Gitt-GS-134 AJ582201
2.30.7.13.7 PLC.MCMEEKINII_SUBGROUP 34 seqs
2.30.7.13.7.3306 OTU 2 seqs
prokMSA_id:70975 Planococcaceae GP-13 
prokMSA_id:73238 Planococcaceae GP-14 
2.30.7.13.7.3347 OTU 1 seq
prokMSA_id:31248 Planococcus citreus 
2.30.7.13.7.3356 OTU 1 seq
prokMSA_id:15021 Planococcus alkanoclasticus str. MAE2 NCIMB 13489
2.30.7.13.7.3359 OTU 1 seq
prokMSA_id:15024 Planococcus kocurii NCIMB 629
2.30.7.13.7.3383 OTU 1 seq
prokMSA_id:66784 Bacillus sp. PE12 
2.30.7.13.7.3455 OTU 2 seqs
prokMSA_id:17754 Bacillus sp. isolate P53-6
prokMSA_id:85408 Bacillus sp. 433-D9 
2.30.7.13.7.3517 OTU 18 seqs
prokMSA_id:15017 Planococcus okeanokoites
prokMSA_id:15019 Planococcus mcmeekinii str. S23F2 ATCC 700539
prokMSA_id:15025 Planococcus citreus NCIMB 1493
prokMSA_id:16646 Planococcus southpolaris strain CMS 3or
prokMSA_id:29551 Planococcus southpolaris strain CMS 26or
prokMSA_id:33254 Planococcus sp. 'SOS Orange' 
prokMSA_id:37775 Planococcus southpolaris strain CMS 84or
prokMSA_id:45093 Planococcus psychrophilus strain CMS 53or
prokMSA_id:52488 Planococcus sp. JG07 
prokMSA_id:63194 Planococcus sp. p16X 
prokMSA_id:66682 Planococcus citreus strain TF-16 
prokMSA_id:66683 Planococcus maritimus strain TF-9 AF500007
prokMSA_id:68743 Glacial ice G50-TS4 
prokMSA_id:73281 Planococcus citreus 
prokMSA_id:74784 Planococcus psychrotoleratus 
prokMSA_id:77011 Clostridium sp. clone Sh765B-AG-2
prokMSA_id:82798 Antarctic R-8161 strain R-8161
prokMSA_id:91001 Planococcus rifitiensis strain M8 AJ493659
2.30.7.13.7.3542 OTU 4 seqs
prokMSA_id:15018 Renibacterium salmoninarum
prokMSA_id:22739 Bacillus psychrodurans strain DSM 11713
prokMSA_id:23863 Bacillus psychrotolerans strain DSM 11706
prokMSA_id:36118 Arsenic resistant soil 7-04 
2.30.7.13.7.3594 OTU 1 seq
prokMSA_id:81178 Planococcus maitrii strain S1
2.30.7.13.7.3733 OTU 1 seq
prokMSA_id:35322 Bacillus sp. strain NIBH P3M5 complete 
2.30.7.13.7.3760 OTU 1 seq
prokMSA_id:18100 Bacillus sp. KL-024 
2.30.7.13.7.3783 OTU 1 seq
prokMSA_id:48809 Blackwater bioreactor BW21 
2.30.7.14 B.THERMOCLOACAE 7 seqs
2.30.7.14.3695 OTU 2 seqs
prokMSA_id:15026 Bacillus thermocloacae DSM 5250
prokMSA_id:67361 Bacillus sp. MSP06G 
2.30.7.14.3866 OTU 4 seqs
prokMSA_id:20396 Gram-positive MOL361 complete 
prokMSA_id:27545 clone p-2330-s962-2 
prokMSA_id:29728 clone p-66-a5 
prokMSA_id:45887 clone p-79-a5 AF371534
2.30.7.14.3898 OTU 1 seq
prokMSA_id:27234 compost 4-28 
2.30.7.15 LISTERIA-BROCHOTHRIX_GROUP 31 seqs
2.30.7.15.1 LIS.MONOCYTOGENES_SUBGROUP 31 seqs
2.30.7.15.1.3319 OTU 1 seq
prokMSA_id:16370 isolate MB405
2.30.7.15.1.3364 OTU 4 seqs
prokMSA_id:15034 Listeria grayi ATCC 19120 . X98526
prokMSA_id:15041 Listeria grayi CIP 6818. X56150
prokMSA_id:69153 Listeria grayi strain CECT 942
prokMSA_id:72152 Listeria grayi strain CECT 931T AJ515520
2.30.7.15.1.3662 OTU 2 seqs
prokMSA_id:17260 clone S37-11 AJ308388
prokMSA_id:41555 clone S24-10
2.30.7.15.1.3701 OTU 24 seqs
prokMSA_id:15030 Listeria ivanovii subsp. londoniensis CLIP 12229
prokMSA_id:15032 Listeria innocua
prokMSA_id:15036 Listeria monocytogenes ATCC 35152. M58822
prokMSA_id:15037 Listeria ivanovii subsp. ivanovii str. SLCC 2379 CLIP 12510
prokMSA_id:15039 Listeria innocua str. SLCC 3379 ATCC 33090
prokMSA_id:15040 Listeria seeligeri ATCC 35976
prokMSA_id:15042 Listeria monocytogenes
prokMSA_id:15044 Listeria monocytogenes str. DD 6821. U84150
prokMSA_id:15045 Listeria monocytogenes str. LL195
prokMSA_id:15046 Listeria welshimeri str. Welshimer V8 ATCC 35897
prokMSA_id:46413 Listeria innocua Clip11262 complete genome segment 10/12 AL5
prokMSA_id:49371 Listeria monocytogenes strain EGD complete genome segment 11
prokMSA_id:50304 Listeria monocytogenes strain EGD complete genome NC_003210
prokMSA_id:53366 Listeria innocua Clip11262 complete genome NC_003212
prokMSA_id:53770 Listeria monocytogenes strain EGD complete genome segment 9/
prokMSA_id:54496 Listeria innocua Clip11262 complete genome segment 8/12 AL59
prokMSA_id:59299 Listeria monocytogenes strain CECT 4032 AJ508749
prokMSA_id:59488 Listeria seeligeri AJ416946
prokMSA_id:59524 Listeria seeligeri strain CECT 941 AJ416945
prokMSA_id:69445 Listeria monocytogenes strain CECT 935 AJ515515
prokMSA_id:69491 Listeria monocytogenes strain CECT 932 AJ515513
prokMSA_id:69663 Listeria welshimeri strain CECT 919T AJ515519
prokMSA_id:70623 Listeria monocytogenes strain CECT 4031T AJ515512
prokMSA_id:74622 Listeria seeligeri strain CECT 917T AJ515518
2.30.7.16 ABIOTROPHIA_GROUP 52 seqs
2.30.7.16.3297 OTU 11 seqs
prokMSA_id:15071 Aerococcus urinae str. G1-84
prokMSA_id:15072 Aerococcus urinae str. 1656-92
prokMSA_id:15073 Aerococcus urinae str. 944-94
prokMSA_id:15074 Aerococcus urinae str. 998-93
prokMSA_id:95500 Aerococcus urinae isolate CCUG 32514 AY422716
prokMSA_id:96251 Aerococcus urinae isolate CDC 151585 AY422712
prokMSA_id:96543 Aerococcus urinae isolate NL 95028 AY422713
prokMSA_id:96593 Aerococcus urinae isolate DK E2T AY422717
prokMSA_id:97674 Aerococcus urinae isolate NL 95012 AY422714
prokMSA_id:98017 Aerococcus urinae isolate NL 95031 AY422711
prokMSA_id:98780 Aerococcus urinae isolate CDC 335295 AY422715
2.30.7.16.3386 OTU 1 seq
prokMSA_id:34802 feedlot manure B87 
2.30.7.16.3425 OTU 1 seq
prokMSA_id:15050 Facklamia hominis
2.30.7.16.3423 OTU 1 seq
prokMSA_id:48237 B16S 
2.30.7.16.3431 OTU 1 seq
prokMSA_id:15053 Facklamia languida str. 1144-97
2.30.7.16.3466 OTU 1 seq
prokMSA_id:15060 Ignavigranum ruoffiae str. 1607-97 CCUG 37658
2.30.7.16.3470 OTU 1 seq
prokMSA_id:15061 Facklamia sourekii
2.30.7.16.3471 OTU 1 seq
prokMSA_id:15062 Facklamia CCUG30090 CCUG 30090
2.30.7.16.3522 OTU 7 seqs
prokMSA_id:15066 Aerococcus viridans ATCC 11563 . M58797
prokMSA_id:15067 Aerococcus LV65.5:W1 str. LV65.5:W1
prokMSA_id:15068 Pediococcus urinaeequi IFO 12173
prokMSA_id:26672 Aerococcus viridans strain dtb226 AJ309980
prokMSA_id:39287 Swine manure pit PPC6 AF445246
prokMSA_id:55490 Aerococcus viridans AF548625
prokMSA_id:82321 Aerococcus sp. clone ckl5 
2.30.7.16.3519 OTU 4 seqs
prokMSA_id:15054 Abiotrophia elegans str. B1333 DSM 11693 . AF016390
prokMSA_id:15055 Abiotrophia sp. str. 2640-91
prokMSA_id:15056 Abiotrophia sp. str. 4067-96
prokMSA_id:15057 Abiotrophia elegans str. HHC5
2.30.7.16.3528 OTU 1 seq
prokMSA_id:48276 Streptococcus sp. isolate 2992-95
2.30.7.16.3575 OTU 2 seqs
prokMSA_id:35088 Aerococcus rochesterensis 
prokMSA_id:37545 Aerococcus sp. CCUG43001 
2.30.7.16.3572 OTU 3 seqs
prokMSA_id:15051 Facklamia 164-92 str. 164-92
prokMSA_id:15052 Facklamia 1440-97 str. 1440-97
prokMSA_id:52354 Facklamia ignava Y15716
2.30.7.16.3615 OTU 1 seq
prokMSA_id:23513 Aerococcus urinaehominis strain CCUG 42038b
2.30.7.16.3631 OTU 2 seqs
prokMSA_id:15063 Abiotrophia defectiva str. SC10 ATCC 49176
prokMSA_id:84770 Abiotrophia sp. oral clone P4PA_155 P1 
2.30.7.16.3717 OTU 1 seq
prokMSA_id:15070 Aerococcus urinae str. F1-84
2.30.7.16.3719 OTU 1 seq
prokMSA_id:15076 Aerococcus CCUG28826 CCUG 28826
2.30.7.16.3782 OTU 1 seq
prokMSA_id:71345 feedlot manure B7 
2.30.7.16.3799 OTU 1 seq
prokMSA_id:16600 Aerosphaera taetra strain CCUG 43036T
2.30.7.16.3851 OTU 1 seq
prokMSA_id:74511 Facklamia sp. strain M1832/95/2
2.30.7.16.3858 OTU 1 seq
prokMSA_id:42227 Facklamia sp. CCUG 42728 
2.30.7.16.3870 OTU 8 seqs
prokMSA_id:15058 Abiotrophia adiacens str. TKT1
prokMSA_id:15065 Abiotrophia adiacens str. GaD ATCC 49175
prokMSA_id:20183 oral RP55-1 AB028411
prokMSA_id:26395 oral RP55-44 AB028441
prokMSA_id:34191 oral RP55-12 AB028421
prokMSA_id:54764 oral RP55-11 AB028420
prokMSA_id:70105 Granulicatella adiacens strain 10/833
prokMSA_id:70746 Granulicatella adiacens strain WG160 AJ312377
2.30.7.17 LACTOBACILLI 385 seqs
2.30.7.17.1 WEI.VIRIDESCENS_SUBGROUP 11 seqs
2.30.7.17.1.3286 OTU 4 seqs
prokMSA_id:15087 Weissella viridescens str. S38A ATCC 12706
prokMSA_id:15094 Weissella minor ATCC 35412 . M23039
prokMSA_id:30631 Weissella minor strain:NRIC 1625
prokMSA_id:33970 Weissella viridescens strain NRIC 1536
2.30.7.17.1.3293 OTU 2 seqs
prokMSA_id:15093 Weissella kandleri DSM 20593 . M23038
prokMSA_id:43687 Weissella kandleri strain:NRIC 1628
2.30.7.17.1.3485 OTU 1 seq
prokMSA_id:48808 Weissella hanii 
2.30.7.17.1.3497 OTU 2 seqs
prokMSA_id:63449 Weissella koreensis isolate S-5673 
prokMSA_id:63450 Weissella koreensis isolate S-5623 
2.30.7.17.1.3801 OTU 1 seq
prokMSA_id:73154 Weissella soli complete 
2.30.7.17.1.3850 OTU 1 seq
prokMSA_id:45087 Weissella halotolerans strain:NRIC 1627
2.30.7.17.2 LC.MESENTEROIDES_SUBGROUP 44 seqs
2.30.7.17.2.3311 OTU 33 seqs
prokMSA_id:15100 Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 . M
prokMSA_id:15102 Leuconostoc gelidum DSM 5578
prokMSA_id:15103 Leuconostoc mesenteroides subsp. mesenteroides NCFB 523
prokMSA_id:15104 Leuconostoc mesenteroides subsp. mesenteroides NRIC 1541
prokMSA_id:15105 Leuconostoc gelidum JCM 10093
prokMSA_id:15106 Leuconostoc mesenteroides subsp. mesenteroides NCDO 523 . X9
prokMSA_id:15107 Leuconostoc mesenteroides subsp. cremoris ATCC 19254 . M2303
prokMSA_id:15110 Leuconostoc citreum str. ; ATCC 49370
prokMSA_id:15111 Leuconostoc citreum str. IH22 KCTC 0542BP. AF111949
prokMSA_id:15112 Leuconostoc citreum str. 22R CNRZ 1478
prokMSA_id:15116 Leuconostoc lactis JCM 6123
prokMSA_id:15117 Leuconostoc argentinum DSM 8581
prokMSA_id:24274 Leuconostoc gasicomitatum strain LMG 18811 
prokMSA_id:24435 Leuconostoc pseudomesenteroides strain NRIC 1777
prokMSA_id:24935 Leuconostoc gelidum strain:NRIC 1778 AB022921
prokMSA_id:28880 Leuconostoc gasicomitatum strain LMG 18812 
prokMSA_id:32872 Leuconostoc kimchii AF173986
prokMSA_id:33805 Leuconostoc mesenteroides strain NRIC 1539 AB023246
prokMSA_id:33861 Leuconostoc mesenteroides strain NRIC 1538 AB023245
prokMSA_id:41680 Leuconostoc pseudomesenteroides 
prokMSA_id:44146 Leuconostoc citreum strain:NRIC 1776
prokMSA_id:45789 Leuconostoc mesenteroides strain NCFB 543 AB023247
prokMSA_id:50225 Leuconostoc mesenteroides strain NCFB 529 AB023244
prokMSA_id:64385 Leuconostoc pseudomesenteroides strain RO1 complete AF515228
prokMSA_id:64684 Leuconostoc inhae strain IH611 
prokMSA_id:64685 Leuconostoc inhae strain IH515 
prokMSA_id:64686 Leuconostoc inhae strain IH101 
prokMSA_id:65411 Leuconostoc inhae 
prokMSA_id:67685 Leuconostoc fructosus 
prokMSA_id:67809 Leuconostoc sp. CR-310S clone crev-3 
prokMSA_id:75964 Leuconostoc citreum 
prokMSA_id:84812 Leuconostoc mesenteroides strain KNUC03 
prokMSA_id:98624 clone LB1C2 AY186084
2.30.7.17.2.3512 OTU 7 seqs
prokMSA_id:20679 Oenococcus oeni strain:95 St.CS-5-1
prokMSA_id:20790 Oenococcus oeni strain:JCM 6125
prokMSA_id:24042 Oenococcus oeni strain:95 ASH-5-C-1
prokMSA_id:32963 Oenococcus oeni strain:95 MBA-6-A-1
prokMSA_id:43771 Oenococcus oeni strain:94 CS-3-4
prokMSA_id:43827 Oenococcus oeni strain:95 St.Mer-2-4
prokMSA_id:44642 Oenococcus oeni strain:95 St.Mer-8-1 AB054808
2.30.7.17.2.3573 OTU 1 seq
prokMSA_id:67688 Leuconostoc ficulneus 
2.30.7.17.2.3601 OTU 3 seqs
prokMSA_id:16498 Leuconostoc fallax 
prokMSA_id:52511 Leuconostoc fallax strain NRIC 0210
prokMSA_id:67686 Leuconostoc fallax 
2.30.7.17.3 L.DELBRUECKII_SUBGROUP 75 seqs
2.30.7.17.3.3275 OTU 1 seq
prokMSA_id:21782 Lactobacillus hamsteri strain DSM 5661T
2.30.7.17.3.3302 OTU 4 seqs
prokMSA_id:15130 Lactobacillus ASF360 str. ASF 360
prokMSA_id:31066 clone L10-37
prokMSA_id:47413 Lactobacillus intestinalis strain DSM 6629T AJ306299
prokMSA_id:98005 clone rc1-227 complete AY239420
2.30.7.17.3.3330 OTU 5 seqs
prokMSA_id:36681 clone p-2500-18B5 
prokMSA_id:39660 clone p-2488-18B5 
prokMSA_id:45134 clone p-2501-18B5 
prokMSA_id:84781 Lactobacillus acidophilus 
prokMSA_id:85653 Lactobacillus sp. KM9212 
2.30.7.17.3.3336 OTU 1 seq
prokMSA_id:22491 clone p-2716-65A5 
2.30.7.17.3.3342 OTU 7 seqs
prokMSA_id:15127 Lactobacillus crispatus DSM 20584
prokMSA_id:16988 Lactobacillus crispatus strain ATCC33820 
prokMSA_id:24380 Lactobacillus crispatus strain TL25a 
prokMSA_id:26975 Lactobacillus crispatus strain KC12a 
prokMSA_id:33386 Lactobacillus crispatus strain TL23a 
prokMSA_id:45385 Lactobacillus crispatus strain KC35b 
prokMSA_id:49002 Lactobacillus crispatus strain KLB79 
2.30.7.17.3.3459 OTU 1 seq
prokMSA_id:18716 clone p-4729-2Wb2 
2.30.7.17.3.3478 OTU 5 seqs
prokMSA_id:18690 Lactobacillus crispatus strain TL39b 
prokMSA_id:21096 Lactobacillus crispatus strain ATCC33197 
prokMSA_id:40830 Lactobacillus crispatus strain TL13 
prokMSA_id:42454 Lactobacillus crispatus strain TL35 
prokMSA_id:49001 Lactobacillus crispatus strain KC12b 
2.30.7.17.3.3490 OTU 10 seqs
prokMSA_id:41700 Lactobacillus crispatus strain BLB2 
prokMSA_id:47365 Lactobacillus sp. KC38 AF243160
prokMSA_id:47438 Lactobacillus sp. Y10 
prokMSA_id:48213 clone p-3443-SwA2 
prokMSA_id:61751 Lactobacillus gallinarum and internal transcribed spacer 1 I
prokMSA_id:77358 Lactobacillus sp. KC38 AF215872
prokMSA_id:82427 Lactobacillus sp. clone ck6 AY080968
prokMSA_id:84798 Lactobacillus ultunense complete 
prokMSA_id:89142 Lactobacillus crispatus clone FX32-3 AY335494
prokMSA_id:92041 Lactobacillus sp. oral clone HT070 AY349383
2.30.7.17.3.3596 OTU 1 seq
prokMSA_id:15125 Lactobacillus amylolyticus str. LA 5 DSM 11664
2.30.7.17.3.3600 OTU 1 seq
prokMSA_id:15129 Lactobacillus crispatus NCTC 4
2.30.7.17.3.3599 OTU 1 seq
prokMSA_id:15128 Lactobacillus gallinarum ATCC 33199
2.30.7.17.3.3604 OTU 15 seqs
prokMSA_id:15132 Lactobacillus acidophilus subsp. johnsonii str. BMF 6Lb6 LAB
prokMSA_id:15135 Lactobacillus johnsonii ATCC 33200
prokMSA_id:16314 Lactobacillus gasseri strain BLB1b 
prokMSA_id:16504 Lactobacillus gasseri strain KC5a 
prokMSA_id:17132 clone p-136-a2 
prokMSA_id:18662 clone p-2315-962-2 
prokMSA_id:22892 Lactobacillus gasseri strain KC36a 
prokMSA_id:28241 clone p-2865-6C5 
prokMSA_id:35597 Lactobacillus gasseri strain BLB3 
prokMSA_id:39384 Lactobacillus gasseri strain TL33a 
prokMSA_id:48509 Lactobacillus gasseri strain KC29 
prokMSA_id:50521 Lactobacillus gasseri strain KC26 
prokMSA_id:66613 Lactobacillus sp. IDSAc 
prokMSA_id:70466 clone p-13-a5 
prokMSA_id:74642 Lactobacillus gasseri strain ATCC 33323 complete 
2.30.7.17.3.3611 OTU 1 seq
prokMSA_id:15133 Lactobacillus sp. CCUG 28746
2.30.7.17.3.3618 OTU 8 seqs
prokMSA_id:18763 Lactobacillus jensenii strain KC44 
prokMSA_id:27140 Lactobacillus jensenii strain KC39 
prokMSA_id:31979 Lactobacillus jensenii strain BLB1a 
prokMSA_id:35518 Lactobacillus jensenii strain KC36b 
prokMSA_id:38470 Lactobacillus jensenii strain ATCC25258 AF243176
prokMSA_id:47914 Lactobacillus jensenii strain KC23 
prokMSA_id:51715 Lactobacillus jensenii strain KC13 
prokMSA_id:77350 Lactobacillus jensenii 
2.30.7.17.3.3678 OTU 1 seq
prokMSA_id:22336 Lactobacillus sp. TV1018 
2.30.7.17.3.3696 OTU 1 seq
prokMSA_id:84126 Lactobacillus gastricus complete 
2.30.7.17.3.3809 OTU 12 seqs
prokMSA_id:15119 Lactobacillus delbrueckii subsp. bulgaricus str. Lb.14 JCM 1
prokMSA_id:15120 Lactobacillus delbrueckii subsp. delbrueckii str. Calvert AT
prokMSA_id:15124 Lactobacillus delbrueckii subsp. lactis ATCC 12315
prokMSA_id:19801 clone p-2370-55G5 
prokMSA_id:24230 Lactobacillus delbrueckii subsp. delbrueckii 
prokMSA_id:55673 clone 54CR complete 
prokMSA_id:67815 clone 45CR 
prokMSA_id:67818 clone 51CR complete 
prokMSA_id:67822 clone 37CR complete 
prokMSA_id:70954 Lactobacillus delbrueckii subsp. bulgaricus 
prokMSA_id:73747 Lactobacillus delbrueckii subsp. lactis 
prokMSA_id:95745 Lactobacillus delbrueckii subsp. indicus strain NCC725 AY421
2.30.7.17.4 L.REUTERI_SUBGROUP 47 seqs
2.30.7.17.4.3353 OTU 1 seq
prokMSA_id:40960 Lactobacillus fermentum 
2.30.7.17.4.3381 OTU 1 seq
prokMSA_id:49917 clone p-4312-4Wa3 
2.30.7.17.4.3395 OTU 4 seqs
prokMSA_id:15143 Lactobacillus reuteri str. F275 DSM 20016
prokMSA_id:15144 Lactobacillus reuteri str. F275 DSM 20016
prokMSA_id:28515 clone S25-5 AJ308392
prokMSA_id:36454 clone p-165-a2 
2.30.7.17.4.3547 OTU 5 seqs
prokMSA_id:16684 Lactobacillus vaginalis strain KC19 
prokMSA_id:21772 Lactobacillus vaginalis strain ATCC49540 
prokMSA_id:35658 Lactobacillus sp. TMW 1.666 strain TMW 1.666
prokMSA_id:35920 clone p-2694-65A5 
prokMSA_id:49202 clone p-3301-23G2 
2.30.7.17.4.3566 OTU 8 seqs
prokMSA_id:15142 Lactobacillus pontis str. LTH 2587
prokMSA_id:15148 Lactobacillus panis DSM 6035
prokMSA_id:15150 Lactobacillus oris DSM 4864
prokMSA_id:22238 clone p-3979-6Wa2 
prokMSA_id:49835 clone p-3083-SwA-3 
prokMSA_id:76876 Lactobacillus pontis strain LMG 14187 T
prokMSA_id:77216 Lactobacillus pontis strain LMG 14188
prokMSA_id:85511 Lactobacillus kalixi complete 
2.30.7.17.4.3652 OTU 6 seqs
prokMSA_id:40447 Lactobacillus sp. G43 
prokMSA_id:40831 Lactobacillus sp. G44 
prokMSA_id:44614 Lactobacillus sp. G35 
prokMSA_id:52162 Lactobacillus sp. KR3 complete 
prokMSA_id:52562 Lactobacillus sp. G22 complete 
prokMSA_id:72717 Lactobacillus sp. G12 complete 
2.30.7.17.4.3759 OTU 1 seq
prokMSA_id:16292 clone S24-8
2.30.7.17.4.3798 OTU 13 seqs
prokMSA_id:15139 Lactobacillus fermentum ATCC 14931 . M58819
prokMSA_id:15140 Lactobacillus fermentum str. KRM. U62624
prokMSA_id:21805 Lactobacillus fermentum strain F53 AF243149
prokMSA_id:41377 Lactobacillus fermentum strain KC5b 
prokMSA_id:44080 Lactobacillus fermentum strain PL9006 complete AF477499
prokMSA_id:52471 Lactobacillus fermentum complete AF302116
prokMSA_id:67806 Lactobacillus sp. CR-6AS clone crev-7 AF349935
prokMSA_id:67816 clone 60CR complete AF349926
prokMSA_id:71186 Lactobacillus fermentum strain KLB12 complete AF522394
prokMSA_id:88448 Lactobacillus cellobiosus specimen voucher CECT 562 AJ575812
prokMSA_id:91530 Lactobacillus sp. rennanqilyf4 AY332396
prokMSA_id:95034 Lactobacillus fermentum MD-9 AY373589
prokMSA_id:96956 Lactobacillus fermentum AJ508720
2.30.7.17.4.3834 OTU 7 seqs
prokMSA_id:15141 Lactobacillus G24 str. G24
prokMSA_id:15146 Lactobacillus mucosae str. S32
prokMSA_id:18857 Lactobacillus mucosae strain BLB1c 
prokMSA_id:41977 rumen 3C3d-12 
prokMSA_id:47403 Lactobacillus mucosae strain F52 
prokMSA_id:48564 clone p-1883-s962-3 
prokMSA_id:77529 Lactobacillus sp. BLB1c AF215871
2.30.7.17.4.3887 OTU 1 seq
prokMSA_id:23477 Lactobacillus colehominis 
2.30.7.17.5 PED.PENTOSACEUS_SUBGROUP 18 seqs
2.30.7.17.5.3281 OTU 1 seq
prokMSA_id:17309 clone p-2984-9F2 
2.30.7.17.5.3521 OTU 4 seqs
prokMSA_id:15153 Pediococcus parvulus str. S182 JCM 5889
prokMSA_id:19307 Pediococcus inopinatus strain DSM 20285
prokMSA_id:39325 Pediococcus damnosus strain DSM 20331
prokMSA_id:51901 clone p-2997-9F2 AF371489
2.30.7.17.5.3874 OTU 1 seq
prokMSA_id:27815 Pediococcus acidilactici strain E 7
2.30.7.17.5.3885 OTU 12 seqs
prokMSA_id:15151 Pediococcus pentosaceus ATCC 33316
prokMSA_id:15152 Pediococcus pentosaceus str. LS 5
prokMSA_id:15156 Pediococcus acidilactici str. LA 3
prokMSA_id:15157 Pediococcus acidilactici str. LA 35
prokMSA_id:38120 Pediococcus pentosaceus strain DSM 20336 
prokMSA_id:40870 Pediococcus acidilactici strain B1104
prokMSA_id:44357 Pediococcus acidilactici strain DSM 20284 
prokMSA_id:56137 Pediococcus pentosaceus strain RO95 complete 
prokMSA_id:56475 Pediococcus acidilactici strain RO17 complete 
prokMSA_id:66561 amplicon L2
prokMSA_id:66562 amplicon L1
prokMSA_id:67805 Pediococcus sp. CR-6S clone crev-10 
2.30.7.17.6 L.PLANTARUM_SUBGROUP 74 seqs
2.30.7.17.6.3279 OTU 1 seq
prokMSA_id:52430 clone p-2956-9F2 
2.30.7.17.6.3475 OTU 2 seqs
prokMSA_id:15164 Lactobacillus collinoides JCM 1123
prokMSA_id:38883 Lactobacillus sp. AB No.74 
2.30.7.17.6.3510 OTU 1 seq
prokMSA_id:26722 clone p-2960-9F2 
2.30.7.17.6.3634 OTU 1 seq
prokMSA_id:56512 Lactobacillus letivazi 23S and internal transcribed spacer 1
2.30.7.17.6.3767 OTU 2 seqs
prokMSA_id:74107 Lactobacillus durianis strain LMG 19193
prokMSA_id:88564 Lactobacillus suebicus strain CECT 5917T AJ575744
2.30.7.17.6.3810 OTU 10 seqs
prokMSA_id:15170 Lactobacillus brevis ATCC 14869
prokMSA_id:15171 Lactobacillus brevis NRIC 1684
prokMSA_id:15172 Lactobacillus brevis str. K9
prokMSA_id:15173 Lactobacillus brevis str. Lactobacillus brevis L63
prokMSA_id:16554 Lactobacillus brevis strain:B4101 AB070606
prokMSA_id:17965 Lactobacillus brevis strain:B5501 AB070611
prokMSA_id:40052 Lactobacillus brevis strain:B5401 AB070608
prokMSA_id:48588 Lactobacillus brevis strain:B5201 AB070607
prokMSA_id:64387 Lactobacillus brevis strain RO66 complete 
prokMSA_id:64389 Lactobacillus brevis strain RO97 complete 
2.30.7.17.6.3808 OTU 49 seqs
prokMSA_id:15159 Lactobacillus pentosus JCM 1588
prokMSA_id:15160 Lactobacillus sp. ATCC 10776. D79213
prokMSA_id:15161 Lactobacillus plantarum JCM 1149
prokMSA_id:15163 Lactobacillus plantarum str. 17-5 ATCC 8014
prokMSA_id:17624 Lactobacillus plantarum AF320256
prokMSA_id:19229 Lactobacillus plantarum AF323677
prokMSA_id:20723 Lactobacillus plantarum strain C5 AF382389
prokMSA_id:26342 Lactobacillus plantarum strain 0B8 AF382390
prokMSA_id:31888 Lactobacillus paraplantarum strain DSM 10667T
prokMSA_id:33677 Lactobacillus plantarum clone Pz619 AF095564
prokMSA_id:46388 Lactobacillus B5407 AB070610
prokMSA_id:48381 clone p-3000-9F2 
prokMSA_id:62378 Lactobacillus plantarum clone L71 AF404710
prokMSA_id:64381 Lactobacillus plantarum strain RO7 complete 
prokMSA_id:64526 Lactobacillus sp. MR-2 
prokMSA_id:64527 Lactobacillus sp. MR-1 
prokMSA_id:67804 Lactobacillus sp. CR-7AS clone crev-8 
prokMSA_id:73661 Lactobacillus plantarum strain UK782 AJ271852
prokMSA_id:73879 Lactobacillus plantarum strain HSW36
prokMSA_id:79835 Lactobacillus plantarum strain WCFS1 complete genome; segmen
prokMSA_id:80353 Lactobacillus plantarum WCFS1 complete genome NC_004567
prokMSA_id:80366 Lactobacillus plantarum strain WCFS1 complete genome; segmen
prokMSA_id:80507 Lactobacillus plantarum strain WCFS1 complete genome; segmen
prokMSA_id:80613 Lactobacillus plantarum strain WCFS1 complete genome; segmen
prokMSA_id:80844 Lactobacillus plantarum strain WCFS1 complete genome; segmen
prokMSA_id:83239 Lactobacillus plantarum strain H AY230220
prokMSA_id:83673 Lactobacillus plantarum strain BJ G26-1 AY244626
prokMSA_id:83774 Lactobacillus plantarum strain H8 AY230225
prokMSA_id:83806 Lactobacillus plantarum strain BJ G9-3 AY244634
prokMSA_id:84089 Lactobacillus plantarum complete 
prokMSA_id:84280 Lactobacillus plantarum strain K14 AY230227
prokMSA_id:84302 Lactobacillus plantarum strain BJ G29-1 AY244631
prokMSA_id:84560 Lactobacillus plantarum strain H19 AY230221
prokMSA_id:84583 Lactobacillus plantarum strain BJ G14-5 AY244637
prokMSA_id:84594 Lactobacillus plantarum strain BJ G26-4 AY244633
prokMSA_id:84617 Lactobacillus plantarum strain H4 AY230223
prokMSA_id:85070 Lactobacillus plantarum strain BJ G32-1 AY244627
prokMSA_id:85716 Lactobacillus plantarum strain BJ G31-1 AY244630
prokMSA_id:86180 Lactobacillus plantarum strain H5 AY230224
prokMSA_id:86228 Lactobacillus pentosus strain BJ G9-1 AY244638
prokMSA_id:88391 Lactobacillus plantarum AB112083
prokMSA_id:92163 Lactobacillus plantarum strain BJ4-1 AY341560
prokMSA_id:92227 Lactobacillus plantarum strain BJ6-2 AY341559
prokMSA_id:92312 Lactobacillus plantarum strain BJ20-1 AY341544
prokMSA_id:92364 Lactobacillus plantarum strain BJ32-1 AY341557
prokMSA_id:92442 Lactobacillus plantarum strain BJ31-1S AY341552
prokMSA_id:92674 Lactobacillus plantarum strain BJ16-28 AY341551
prokMSA_id:93128 Lactobacillus plantarum strain BJ26-2 AY341546
prokMSA_id:95489 Lactobacillus plantarum strain MiLAB14 AY383631
2.30.7.17.6.3813 OTU 1 seq
prokMSA_id:24271 clone p-2626-9F5 
2.30.7.17.6.3829 OTU 5 seqs
prokMSA_id:24802 Lactobacillus kimchii 
prokMSA_id:70330 Lactobacillus paralimentarius strain DSM 13238
prokMSA_id:76191 Lactobacillus paralimentarius strain ACA-DC 3413
prokMSA_id:76249 Lactobacillus paralimentarius strain ACA-DC 3415
prokMSA_id:76371 Lactobacillus paralimentarius strain ACA-DC 3363
2.30.7.17.6.3912 OTU 1 seq
prokMSA_id:38908 clone p-2945-9F2 
2.30.7.17.6.3919 OTU 1 seq
prokMSA_id:27265 clone p-2988-9F2 
2.30.7.17.7 L.SANFRANCISCENSIS_SUBGROUP 20 seqs
2.30.7.17.7.3270 OTU 1 seq
prokMSA_id:15190 Lactobacillus fructivorans DSM 20203
2.30.7.17.7.3278 OTU 8 seqs
prokMSA_id:15178 Lactobacillus kefiri NRIC 1693
prokMSA_id:20664 Lactobacillus parabuchneri AY026751
prokMSA_id:26241 Lactobacillus sp. JKD6 complete 
prokMSA_id:30670 Lactobacillus parakefiri 
prokMSA_id:33139 Lactobacillus ferintoshensis 
prokMSA_id:38705 Lactobacillus sp. ACD7 AY026752
prokMSA_id:87788 Lactobacillus genomosp. C2 AY278620
prokMSA_id:93917 Lactobacillus kefiri AY363303
2.30.7.17.7.3534 OTU 1 seq
prokMSA_id:44586 clone SM2F09 
2.30.7.17.7.3663 OTU 4 seqs
prokMSA_id:15191 Lactobacillus lindneri str. KPA DSM 20690
prokMSA_id:15192 Lactobacillus lindneri str. L2. X95422
prokMSA_id:15193 Lactobacillus lindneri str. LTH 2505. X95423
prokMSA_id:15194 Lactobacillus lindneri str. DA1
2.30.7.17.7.3880 OTU 2 seqs
prokMSA_id:26176 Lactobacillus sp. clone KL-11-1-6 
prokMSA_id:74576 Lactobacillus sp. clone KL-111-2-6 
2.30.7.17.7.3890 OTU 3 seqs
prokMSA_id:15176 Lactobacillus sanfranciscensis DSM 20663
prokMSA_id:15189 Lactobacillus sanfranciscensis str. Kline L-2 ATCC 27651
prokMSA_id:76839 Lactobacillus sanfranciscensis strain C57
2.30.7.17.7.3924 OTU 1 seq
prokMSA_id:15179 Lactobacillus sp. str. YH-15
2.30.7.17.8 L.MALI_SUBGROUP 37 seqs
2.30.7.17.8.3363 OTU 6 seqs
prokMSA_id:15200 Lactobacillus murinus str. ASF 361
prokMSA_id:22999 clone S25-9
prokMSA_id:24547 clone p-487-o2 
prokMSA_id:80227 Lactobacillus murinus strain MP3 AY186045
prokMSA_id:90383 Lactobacillus murinus AY324630
prokMSA_id:97991 clone rc1-18 complete AY239418
2.30.7.17.8.3366 OTU 1 seq
prokMSA_id:84709 Lactobacillus saerimmeri 
2.30.7.17.8.3379 OTU 5 seqs
prokMSA_id:15201 Lactobacillus ruminis str. RF1 ATCC 27780 . M58828
prokMSA_id:19363 rumen 4C3d-19 AB034089
prokMSA_id:26075 rumen 3C3d-2 AB034088
prokMSA_id:30219 clone p-3424-SwA2 
prokMSA_id:48534 rumen 5C3d-14 
2.30.7.17.8.3418 OTU 2 seqs
prokMSA_id:15208 Lactobacillus aviarius 
prokMSA_id:15209 Lactobacillus aviarius 
2.30.7.17.8.3479 OTU 1 seq
prokMSA_id:74053 Lactobacillus equi 
2.30.7.17.8.3493 OTU 1 seq
prokMSA_id:15202 Lactobacillus C33LV5 str. C33LV5
2.30.7.17.8.3496 OTU 1 seq
prokMSA_id:15206 Lactobacillus LMG17676 LMG 17676
2.30.7.17.8.3665 OTU 2 seqs
prokMSA_id:15196 Lactobacillus sp
prokMSA_id:38501 Lactobacillus sp. LuE10 Y17500
2.30.7.17.8.3703 OTU 14 seqs
prokMSA_id:15205 Lactobacillus salivarius subsp. salivarius str. H066 ATCC 11
prokMSA_id:22623 Chicken intestinal MRS 4.5 AF201900
prokMSA_id:33452 Lactobacillus salivarius subsp. salivarius complete AF335475
prokMSA_id:35499 Lactobacillus salivarius 
prokMSA_id:48374 clone p-4323-4Wa3 
prokMSA_id:62010 Lactobacillus salivarius subsp. salicinius strain JCM 1230 
prokMSA_id:62011 Lactobacillus salivarius subsp. salicinius strain JCM 1046 
prokMSA_id:62012 Lactobacillus salivarius subsp. salicinius strain JCM 1047 
prokMSA_id:62013 Lactobacillus salivarius subsp. salicinius strain JCM 1044 A
prokMSA_id:62014 Lactobacillus salivarius subsp. salicinius strain JCM 1042 A
prokMSA_id:62015 Lactobacillus salivarius subsp. salicinius strain JCM 1045 A
prokMSA_id:64741 Lactobacillus salivarius subsp. salivarius complete 
prokMSA_id:95759 Lactobacillus salivarius strain RA2115 AY389803
prokMSA_id:96905 Lactobacillus salivarius strain RA2116 AY389802
2.30.7.17.8.3740 OTU 1 seq
prokMSA_id:50977 Lactobacillus sp. YE06 
2.30.7.17.8.3795 OTU 1 seq
prokMSA_id:23628 equine intestinal sp. MW20 clone MW20
2.30.7.17.8.3914 OTU 2 seqs
prokMSA_id:18965 Lactobacillus sp. LMK3 strain LMK3
prokMSA_id:28727 Lactobacillus sp. 121B AF305930
2.30.7.17.9 L.CASEI_SUBGROUP 38 seqs
2.30.7.17.9.3452 OTU 1 seq
prokMSA_id:46006 clone p-2923-9F2 
2.30.7.17.9.3590 OTU 1 seq
prokMSA_id:39949 Lactobacillus pantheri complete 
2.30.7.17.9.3632 OTU 1 seq
prokMSA_id:35081 clone p-2594-9F5 
2.30.7.17.9.3660 OTU 1 seq
prokMSA_id:15222 Lactobacillus LM-17 str. LM-17
2.30.7.17.9.3669 OTU 2 seqs
prokMSA_id:15211 Lactobacillus manihotivorans str. OND 32 LMG 18010
prokMSA_id:15212 Lactobacillus manihotivorans str. YAM I LMG 18011
2.30.7.17.9.3821 OTU 32 seqs
prokMSA_id:15213 Lactobacillus rhamnosus DSM 20021 . M58815
prokMSA_id:15214 Lactobacillus rhamnosus JCM 1136
prokMSA_id:15215 Lactobacillus casei subsp. casei JCM 1134
prokMSA_id:15216 Lactobacillus casei str. = JCM 8129
prokMSA_id:15218 Lactobacillus casei subsp. casei ATCC 393
prokMSA_id:15219 Lactobacillus zeae ATCC 15820
prokMSA_id:15220 Lactobacillus casei subsp. casei ATCC 334. NONE
prokMSA_id:15221 Lactobacillus paracasei subsp. paracasei JCM 8130
prokMSA_id:15223 Lactobacillus paracasei subsp. paracasei JCM 1133
prokMSA_id:15224 Lactobacillus paracasei subsp. paracasei JCM 1181
prokMSA_id:15225 Lactobacillus paracasei subsp. tolerans JCM 1171
prokMSA_id:19371 Lactobacillus B5406 
prokMSA_id:20863 Lactobacillus paracasei subsp. paracasei strain F31 
prokMSA_id:21135 Lactobacillus sp. P8 
prokMSA_id:27334 Lactobacillus casei strain BL23 AF385770
prokMSA_id:33166 Lactobacillus casei subsp. casei strain UK 318
prokMSA_id:46704 Lactobacillus casei 
prokMSA_id:48136 Lactobacillus rhamnosus strain F11 
prokMSA_id:48159 Lactobacillus casei AF320255
prokMSA_id:50029 Lactobacillus paracasei subsp. paracasei strain KLB58 
prokMSA_id:56018 Lactobacillus sp. CR-609S clone crev-9 
prokMSA_id:66614 Lactobacillus sp. IDLAc 
prokMSA_id:67359 Lactobacillus casei strain KH-1 
prokMSA_id:77419 Lactobacillus sp. F11 
prokMSA_id:77533 Lactobacillus casei 
prokMSA_id:79380 Lactobacillus casei strain ATCC 393 
prokMSA_id:83495 Lactobacillus casei strain CWBI-B623
prokMSA_id:87604 Lactobacillus rhamnosus strain MCRF-412 AY299488
prokMSA_id:87656 Lactobacillus rhamnosus strain MCRF-271 AY299486
prokMSA_id:87913 Lactobacillus casei strain MCRF-284 AY299487
prokMSA_id:93435 Lactobacillus paracasei subsp. paracasei isolate Akira1 ; -2
prokMSA_id:93837 Lactobacillus sp. rennanqilfy10 AY363376
2.30.7.17.10 L.BIFERMENTANS_SUBGROUP 3 seqs
2.30.7.17.10.3889 OTU 1 seq
prokMSA_id:72207 Lactobacillus sp. YE10 
2.30.7.17.10.3908 OTU 2 seqs
prokMSA_id:72216 Lactobacillus sp. YE07 
prokMSA_id:89972 Lactobacillus sp. CECT 5923 strain CECT 5923 AJ576008
2.30.7.17.11 L.PEROLENS_SUBGROUP 7 seqs
2.30.7.17.11.3513 OTU 1 seq
prokMSA_id:15229 Pediococcus dextrinicus str. L95 JCM 5887
2.30.7.17.11.3523 OTU 1 seq
prokMSA_id:15230 Lactobacillus LMG17710 LMG 17710
2.30.7.17.11.3593 OTU 1 seq
prokMSA_id:36943 Lactobacillus algidus 
2.30.7.17.11.3768 OTU 1 seq
prokMSA_id:15232 Lactobacillus perolens str. L532
2.30.7.17.11.3842 OTU 3 seqs
prokMSA_id:15233 Lactobacillus perolens str. L534
prokMSA_id:15234 Lactobacillus sp. str. LA-6
prokMSA_id:36168 Lactobacillus sp. AB No.434 E17066
2.30.7.17.12 L.SAKEISAK_SUBGROUP 11 seqs
2.30.7.17.12.3526 OTU 10 seqs
prokMSA_id:15236 Lactobacillus casei subsp. fusiformis str. = JCM 1177
prokMSA_id:27633 Lactobacillus sakei operon and rrnB operon 
prokMSA_id:33531 clone GL184.23 AY038636
prokMSA_id:35674 clone GL182.39 AY038634
prokMSA_id:52229 clone GL178.12 AY038637
prokMSA_id:81067 Lactobacillus sakei strain HNMRS2c AY204895
prokMSA_id:81933 Lactobacillus curvatus subsp. melibiosus strain CCUG 34545 A
prokMSA_id:81991 Lactobacillus sakei subsp. carnosus strain CCUG 31331 
prokMSA_id:82221 Lactobacillus sakei subsp. sakei strain DSM 20017 AY204893
prokMSA_id:82312 Lactobacillus sakei strain HNSL5a 
2.30.7.17.12.3587 OTU 1 seq
prokMSA_id:49102 Lactobacillus fuchuensis 
2.30.7.18 CARNOBACTERIUM_GROUP 57 seqs
2.30.7.18.1 AIC.OTITIS_SUBGROUP 5 seqs
2.30.7.18.1.3537 OTU 1 seq
prokMSA_id:15237 Alloiococcus otitis NCFB 2890
2.30.7.18.1.3682 OTU 1 seq
prokMSA_id:15241 Dolosigranulum pigrum str. R91/1468 NCFB 2975
2.30.7.18.1.3681 OTU 3 seqs
prokMSA_id:15238 unnamed organism
prokMSA_id:15239 unnamed organism. AF124034
prokMSA_id:15240 unnamed organism. AF124041
2.30.7.18.2 CRN.DIVERGENS_SUBGROUP 51 seqs
2.30.7.18.2.3303 OTU 1 seq
prokMSA_id:48912 clone p-2073-s959-2 
2.30.7.18.2.3317 OTU 2 seqs
prokMSA_id:27852 feedlot manure A77 
prokMSA_id:71668 feedlot manure B24 
2.30.7.18.2.3326 OTU 1 seq
prokMSA_id:29998 Nostocoida limicola I 
2.30.7.18.2.3323 OTU 5 seqs
prokMSA_id:15246 Lactosphaera pasteurii str. KoTa2 ATCC 35945
prokMSA_id:15254 Trichococcus flocculiformis DSM 2094
prokMSA_id:47450 Nostocoida limicola I strain Ben201 
prokMSA_id:66187 clone IB-11
prokMSA_id:77290 Trichococcus sp. Coc4 strain Coc4
2.30.7.18.2.3358 OTU 1 seq
prokMSA_id:24332 Carnobacterium sp. D4 
2.30.7.18.2.3387 OTU 1 seq
prokMSA_id:69980 Firmicutes sp. oral clone BX005 
2.30.7.18.2.3410 OTU 1 seq
prokMSA_id:37875 Hailaer soda lake F24 
2.30.7.18.2.3435 OTU 3 seqs
prokMSA_id:36593 Hailaer soda lake F1 
prokMSA_id:47180 Hailaer soda lake F27 
prokMSA_id:76550 clone ZB-Z25 
2.30.7.18.2.3501 OTU 1 seq
prokMSA_id:27088 sp. Lake Nakuru isolate WN16
2.30.7.18.2.3504 OTU 9 seqs
prokMSA_id:55874 Marinolactobacillus psychrotolerans strain:M13-7 AB083411
prokMSA_id:61165 Marinolactobacillus psychrotolerans strain:O21 AB083413
prokMSA_id:61166 Marinolactobacillus psychrotolerans strain:O1-1 AB083412
prokMSA_id:61167 Marinolactobacillus psychrotolerans strain:M13-6 AB083410
prokMSA_id:61168 Marinolactobacillus psychrotolerans strain:M13-5 AB083409
prokMSA_id:61171 Marinolactobacillus psychrotolerans strain:M13-3 AB083407
prokMSA_id:61172 Marinolactobacillus psychrotolerans strain:M13-4 AB083408
prokMSA_id:61173 Marinolactobacillus psychrotolerans strain:M13-2 AB083406
prokMSA_id:78803 Marinolactobacillus sp. MJYP.25.24 
2.30.7.18.2.3536 OTU 1 seq
prokMSA_id:55452 clone cvf56045 
2.30.7.18.2.3553 OTU 1 seq
prokMSA_id:15259 Desemzia incerta DSM 20581
2.30.7.18.2.3561 OTU 1 seq
prokMSA_id:16452 Carnobacterium gallinarum strain DSM 4847
2.30.7.18.2.3683 OTU 1 seq
prokMSA_id:15243 Carnobacterium funditum str. pf3 DSM 5970
2.30.7.18.2.3693 OTU 1 seq
prokMSA_id:73819 feedlot manure B32 
2.30.7.18.2.3792 OTU 1 seq
prokMSA_id:22650 Carnobacterium sp. D35 
2.30.7.18.2.3812 OTU 1 seq
prokMSA_id:41252 clone RFLP 31E 
2.30.7.18.2.3833 OTU 7 seqs
prokMSA_id:15257 Carnobacterium alterfunditum ACAM 311
prokMSA_id:15258 Carnobacterium sp. str. K1
prokMSA_id:15260 Carnobacterium LV62:W1 str. LV62:W1
prokMSA_id:15261 Carnobacterium Y6 str. Y6
prokMSA_id:19355 Carnobacterium viridans 
prokMSA_id:36062 Carnobacterium piscicola 
prokMSA_id:44929 Carnobacterium sp. FTR-1 
2.30.7.18.2.3840 OTU 5 seqs
prokMSA_id:15250 Lactosphaera pasteurii str. KoTa2 DSM 2381
prokMSA_id:28044 Lactosphaera sp. PMagG1 
prokMSA_id:34045 Ruminococcus palustris strain DSM 9172T
prokMSA_id:47658 Trichococcus collinsii strain 37AN3
prokMSA_id:66180 clone IIA-2
2.30.7.18.2.3854 OTU 5 seqs
prokMSA_id:15245 Carnobacterium St2 str. St2
prokMSA_id:53108 Carnobacterium mobile strain DSM 4848 strain AJ317963
prokMSA_id:56246 Carnobacterium mobile strain:DSM 4848
prokMSA_id:83763 rumen clone BS28 
prokMSA_id:84009 Carnobacterium sp. strain R-7279
2.30.7.18.2.3902 OTU 2 seqs
prokMSA_id:43119 Granulicatella sp. M658/99/3 
prokMSA_id:43965 Atopobacter phocae strain m1590/94/2
2.30.7.18.3 DSZ.INCERTA_SUBGROUP 1 seq
2.30.7.18.3.3736 OTU 1 seq
prokMSA_id:15266 Desemzia incerta DSM 20581
2.30.7.20 ENTEROCOCCUS_GROUP 110 seqs
2.30.7.20.3261 OTU 5 seqs
prokMSA_id:15320 Enterococcus mundtii ATCC 43186
prokMSA_id:15326 Enterococcus mundtii NCFB 2375
prokMSA_id:44890 Enterococcus mundtii strain CECT972T
prokMSA_id:62895 Enterococcus mundtii 
prokMSA_id:74813 Enterococcus mundtii strain LMG 10748
2.30.7.20.3288 OTU 1 seq
prokMSA_id:76127 Swine manure RT-5D 
2.30.7.20.3289 OTU 1 seq
prokMSA_id:20210 Isobaculum melis isolate CCUG 37660T
2.30.7.20.3298 OTU 6 seqs
prokMSA_id:15315 Enterococcus saccharolyticus ATCC 43076
prokMSA_id:15329 Enterococcus saccharolyticus NCDO 2594
prokMSA_id:43998 Enterococcus saccharolyticus strain LMG 11427
prokMSA_id:67810 Enterococcus sp. CR-303S clone crev-2 
prokMSA_id:72178 Enterococcus villorum strain LMG 12287
prokMSA_id:74276 Enterococcus villorum 
2.30.7.20.3318 OTU 4 seqs
prokMSA_id:15302 Enterococcus sp. str. GvF410
prokMSA_id:57509 Enterococcus ratti 
prokMSA_id:60256 Enterococcus ratti 
prokMSA_id:73318 Enterococcus faecalis strain UK873
2.30.7.20.3346 OTU 1 seq
prokMSA_id:37654 isopod gut clone RKPsBA 
2.30.7.20.3382 OTU 16 seqs
prokMSA_id:15273 Enterococcus faecalis str. JH2-2
prokMSA_id:15274 Enterococcus faecalis
prokMSA_id:15275 Enterococcus faecalis
prokMSA_id:26643 Enterococcus faecalis 
prokMSA_id:29590 Enterococcus faecalis complete AB036835
prokMSA_id:46861 Enterococcus faecalis strain CECT481T AJ420803
prokMSA_id:50297 Enterococcus faecalis strain P7812
prokMSA_id:58583 Enterococcus faecalis complete 
prokMSA_id:64383 Enterococcus faecalis strain RO90 complete 
prokMSA_id:76134 Enterococcus faecalis 
prokMSA_id:82596 Enterococcus faecalis V583 section 11 of 11 of the complete 
prokMSA_id:83107 Enterococcus faecalis V583 complete genome NC_004668
prokMSA_id:84808 Enterococcus faecalis V583 section 4 of 11 of the complete g
prokMSA_id:85425 Enterococcus faecalis V583 section 1 of 11 of the complete g
prokMSA_id:85640 Enterococcus faecalis V583 section 10 of 11 of the complete 
prokMSA_id:95956 Enterococcus faecalis AY395018
2.30.7.20.3392 OTU 1 seq
prokMSA_id:15276 Vagococcus CCUG39187 str. m1134/97/1 CCUG 39187
2.30.7.20.3433 OTU 1 seq
prokMSA_id:15292 Tetragenococcus muriaticus
2.30.7.20.3457 OTU 1 seq
prokMSA_id:20438 clone:BCf6-17
2.30.7.20.3598 OTU 9 seqs
prokMSA_id:15271 Tetragenococcus halophilus JCM 5888
prokMSA_id:15291 Tetragenococcus halophilus IAM 1676
prokMSA_id:15293 Enterococcus solitarius ATCC 49428
prokMSA_id:15294 Enterococcus solitarius NCIMB 12902
prokMSA_id:16995 Tetragenococcus halophilus strain:FSB101
prokMSA_id:20568 Enterococcus solitarius strain DSM 5634
prokMSA_id:20595 Tetragenococcus halophilus strain DSM 20339
prokMSA_id:36890 Tetragenococcus halophilus strain:FSB401
prokMSA_id:38324 Tetragenococcus halophilus strain:FSB201
2.30.7.20.3680 OTU 2 seqs
prokMSA_id:15284 Melissococcus pluton str. M40P NCDO 2440
prokMSA_id:15336 Melissococcus pluton str. M43P NCDO 2443
2.30.7.20.3713 OTU 4 seqs
prokMSA_id:15279 Enterococcus cecorum ATCC 43198
prokMSA_id:15280 Enterococcus cecorum NCDO 2674
prokMSA_id:48901 mpn-isolate group 14 
prokMSA_id:93993 Enterococcus cecorum AY365054
2.30.7.20.3881 OTU 58 seqs
prokMSA_id:15287 Enterococcus faecium str. GUCR
prokMSA_id:15288 Enterococcus faecium str. 71380
prokMSA_id:15289 Enterococcus faecium
prokMSA_id:15290 Enterococcus faecium NCFB 942
prokMSA_id:15307 Enterococcus gallinarum str. 42
prokMSA_id:15308 Enterococcus casseliflavus str. 32
prokMSA_id:15309 Enterococcus gallinarum
prokMSA_id:15310 Enterococcus casseliflavus
prokMSA_id:15311 Enterococcus hirae DSM 20160
prokMSA_id:15312 Enterococcus durans ATCC 59607
prokMSA_id:15313 Enterococcus pseudoavium ATCC 49372
prokMSA_id:15314 Enterococcus raffinosus str. Mayo Clinic laboratory strain
prokMSA_id:15316 Enterococcus dispar ATCC 51266
prokMSA_id:15317 Enterococcus avium str. Mayo Clinic laboratory strain
prokMSA_id:15319 Enterococcus malodoratus ATCC 43197
prokMSA_id:15321 Enterococcus gallinarum NCFB 2314
prokMSA_id:15323 Enterococcus flavescens NCIMB 13226
prokMSA_id:15324 Enterococcus raffinosus NCIMB 12901
prokMSA_id:15325 Enterococcus malodoratus NCFB 846
prokMSA_id:15328 Enterococcus pseudoavium NCFB 2138
prokMSA_id:15330 Enterococcus dispar NCIMB 13000
prokMSA_id:15331 Enterococcus durans NCFB 596
prokMSA_id:15332 Enterococcus avium NCFB 2369
prokMSA_id:16425 Enterococcus gallinarum 
prokMSA_id:17444 Enterococcus dispar strain LMG 13521
prokMSA_id:18966 mpn-isolate group 13 
prokMSA_id:19924 Enterococcus gallinarum strain CECT970T
prokMSA_id:20443 Enterococcus raffinosus strain LMG 12999
prokMSA_id:21403 Enterococcus azikeevi strain IB-A35
prokMSA_id:25976 Enterococcus faecium strain E 26
prokMSA_id:28797 Enterococcus flavescens strain LMG 13518
prokMSA_id:29774 sp. 1275b 
prokMSA_id:32550 clone p-1938-s962-3 
prokMSA_id:35969 isopod gut clone RKPsAG 
prokMSA_id:37447 Enterococcus hirae strain LMG 6399
prokMSA_id:39621 Enterococcus faecium strain LMG 11423
prokMSA_id:40545 Enterococcus pseudoavium strain LMG 11426
prokMSA_id:42419 Enterococcus casseliflavus strain CECT969T
prokMSA_id:43140 Enterococcus gallinarum strain LMG 13129
prokMSA_id:45325 Enterococcus avium strain LMG 10744
prokMSA_id:45428 Enterococcus hirae strain CECT279T
prokMSA_id:45618 Enterococcus flavescens strain CECT4481T
prokMSA_id:47702 Enterococcus durans strain DSM20633
prokMSA_id:47779 Enterococcus durans strain CECT411T
prokMSA_id:48898 Enterococcus malodoratus strain LMG 10747
prokMSA_id:50018 Enterococcus faecium strain CECT410T
prokMSA_id:50668 Enterococcus avium 
prokMSA_id:51948 clone p-2526-18B5 
prokMSA_id:62987 Enterococcus sp. clone T8-20 rrn 
prokMSA_id:67869 Enterococcus gilvus 
prokMSA_id:72595 Enterococcus sp. AK61 
prokMSA_id:73484 Enterococcus casseliflavus CCM 4870 
prokMSA_id:74720 Enterococcus hirae strain DSM20160
prokMSA_id:75570 Swine manure RT-21 
prokMSA_id:76721 Enterococcus faecium complete 
prokMSA_id:84132 Enterococcus sulfureus strain A36202 
prokMSA_id:88240 Enterococcus sp. CDC PNS-E1 AY321375
prokMSA_id:90221 Enterococcus sp. CDC PNS-E3 AY321377
2.30.7.21 STREPTOCOCCI 300 seqs
2.30.7.21.1 LCC.LACTIS_SUBGROUP 50 seqs
2.30.7.21.1.3327 OTU 1 seq
prokMSA_id:54794 Streptococcus sp. clone KL-36-1-14 
2.30.7.21.1.3434 OTU 1 seq
prokMSA_id:78015 Lactococcus sp. clone:Rs-C68
2.30.7.21.1.3436 OTU 10 seqs
prokMSA_id:15348 Lactococcus garvieae JCM 8735
prokMSA_id:19276 Lactococcus garvieae strain FLG4 AF352164
prokMSA_id:28491 Lactococcus garvieae strain FLG2 AF352163
prokMSA_id:31382 Lactococcus garvieae strain FLG12 AF352166
prokMSA_id:36458 Enterococcus seriolicida AF061005
prokMSA_id:39953 Enterococcus seriolicida AB026843
prokMSA_id:44780 Enterococcus sp. U1-1 
prokMSA_id:45250 Lactococcus garvieae complete 
prokMSA_id:45788 Enterococcus sp. U5-1 
prokMSA_id:48070 Lactococcus garvieae strain FLG5 AF352165
2.30.7.21.1.3558 OTU 1 seq
prokMSA_id:78223 Lactococcus sp. clone:Rs-B70
2.30.7.21.1.3722 OTU 37 seqs
prokMSA_id:15343 Lactococcus lactis str. IL 1403
prokMSA_id:15345 Lactococcus lactis subsp. cremoris ATCC 19257
prokMSA_id:30402 Lactococcus sp. clone KL-86-2-7 
prokMSA_id:48928 Lactococcus lactis subsp. lactis IL1403 complete genome AE00
prokMSA_id:54615 Lactococcus lactis subsp. lactis complete genome NC_002662
prokMSA_id:58588 Lactococcus lactis subsp. lactis 
prokMSA_id:64379 Lactococcus lactis subsp. lactis strain RO6 complete 
prokMSA_id:64380 Lactococcus lactis subsp. lactis strain RO37 complete 
prokMSA_id:64382 Lactococcus lactis subsp. lactis strain RO3 complete 
prokMSA_id:66046 Lactococcus lactis strain 04
prokMSA_id:66047 Lactococcus lactis strain MRS5
prokMSA_id:66048 Lactococcus lactis strain MRS2
prokMSA_id:66049 Lactococcus lactis strain MRS1
prokMSA_id:66568 amplicon F
prokMSA_id:69977 Lactococcus lactis and internal transcribed spacer 1 ITS1 st
prokMSA_id:75483 Swine manure RT-3A 
prokMSA_id:75681 Swine manure RT-6B 
prokMSA_id:82870 Lactococcus lactis strain: NIRD 712 AB100796
prokMSA_id:83001 Lactococcus lactis subsp. lactis strain: NCDO 604T AB100803
prokMSA_id:83027 Lactococcus lactis subsp. lactis strain: NIAI SLN AB100797
prokMSA_id:83318 Lactococcus lactis subsp. lactis bv. diacetylactis strain: N
prokMSA_id:83325 Lactococcus lactis subsp. lactis bv. diacetylactis strain: N
prokMSA_id:83390 Lactococcus lactis subsp. cremoris strain: NIAI H-61 AB10079
prokMSA_id:83439 Lactococcus lactis subsp. lactis MR17 complete 
prokMSA_id:83464 Lactococcus lactis subsp. cremoris strain: NIRD 924 AB100794
prokMSA_id:84466 Lactococcus lactis subsp. cremoris strain: NCDO 607T AB10080
prokMSA_id:84491 Lactococcus lactis subsp. lactis bv. diacetylactis strain: N
prokMSA_id:84539 Lactococcus lactis subsp. hordniae strain: NCDO 2181T
prokMSA_id:84578 Lactococcus lactis subsp. lactis bv. diacetylactis strain: A
prokMSA_id:84723 Lactococcus lactis subsp. cremoris strain: NIRD Ho-6 AB10079
prokMSA_id:85252 Lactococcus lactis subsp. lactis strain: NIAI 527 AB100795
prokMSA_id:85709 Lactococcus lactis subsp. lactis strain: NIRD SC-10 AB100798
prokMSA_id:85961 Lactococcus lactis subsp. cremoris strain: NIRD HC-1 AB10079
prokMSA_id:86118 Lactococcus lactis subsp. lactis MR26 complete 
prokMSA_id:86637 clone ER1_4 
prokMSA_id:89935 HOClCi1 AY328550
prokMSA_id:92114 Lactococcus lactis subsp. lactis strain:K335 AB118033
2.30.7.21.2 STC.EQUI_SUBGROUP 3 seqs
2.30.7.21.2.3616 OTU 1 seq
prokMSA_id:15354 Streptococcus equi subsp. equi ATCC 33398
2.30.7.21.2.3846 OTU 1 seq
prokMSA_id:15355 Streptococcus equi subsp. zooepidemicus str. S 34 ATCC 43079
2.30.7.21.2.3869 OTU 1 seq
prokMSA_id:81475 Streptococcus equi subsp. zooepidemicus strain:Tokyo1291
2.30.7.21.3 STC.PYOGENES_SUBGROUP 32 seqs
2.30.7.21.3.3462 OTU 1 seq
prokMSA_id:22640 Streptococcus orisratti 
2.30.7.21.3.3507 OTU 4 seqs
prokMSA_id:28805 Streptococcus ferus strain HD3
prokMSA_id:35033 Streptococcus ferus strain LMG16520T 
prokMSA_id:37236 Streptococcus ferus 
prokMSA_id:39498 Streptococcus ferus strain 8S1
2.30.7.21.3.3533 OTU 1 seq
prokMSA_id:22071 Streptococcus sp. strain 2285-97
2.30.7.21.3.3576 OTU 9 seqs
prokMSA_id:15357 Streptococcus didelphis str. W95-108899177
prokMSA_id:15358 Streptococcus didelphis str. W95-018899131
prokMSA_id:15359 Streptococcus didelphis str. W94-11374-1
prokMSA_id:15360 Streptococcus didelphis str. W94-12010. AF176104
prokMSA_id:15361 Streptococcus didelphis str. 95-111064
prokMSA_id:15362 Streptococcus didelphis str. W95-2085-1
prokMSA_id:15363 Streptococcus didelphis str. 95-3349-1. AF176107
prokMSA_id:15364 Streptococcus didelphis str. W95-3565-7
prokMSA_id:15386 Streptococcus didelphis str. W95-4849
2.30.7.21.3.3699 OTU 16 seqs
prokMSA_id:15372 Streptococcus agalactiae ATCC 13813
prokMSA_id:15373 Streptococcus agalactiae ATCC 27956
prokMSA_id:15374 Streptococcus agalactiae JCM 5671
prokMSA_id:15382 Streptococcus porcinus ATCC 43138
prokMSA_id:15383 Streptococcus agalactiae ATCC 23956
prokMSA_id:15425 Streptococcus agalactiae NCDO 1348 . X59032
prokMSA_id:55265 Streptococcus agalactiae 2603V/R section 2 of 100 of the com
prokMSA_id:55977 Streptococcus agalactiae 2603V/R section 5 of 100 of the com
prokMSA_id:57716 Streptococcus agalactiae NEM316 complete genome
prokMSA_id:58770 Streptococcus agalactiae 
prokMSA_id:59530 Streptococcus agalactiae 2603V/R complete genome NC_004116
prokMSA_id:59711 Streptococcus agalactiae 2603V/R section 20 of 100 of the co
prokMSA_id:59712 Streptococcus agalactiae 2603V/R section 17 of 100 of the co
prokMSA_id:59713 Streptococcus agalactiae 2603V/R section 12 of 100 of the co
prokMSA_id:59714 Streptococcus agalactiae 2603V/R section 8 of 100 of the com
prokMSA_id:59717 Streptococcus agalactiae 2603V/R section 1 of 100 of the com
2.30.7.21.3.3907 OTU 1 seq
prokMSA_id:15387 clone v6
2.30.7.21.5 STC.THORALTENSIS_SUBGROUP 1 seq
2.30.7.21.5.3789 OTU 1 seq
prokMSA_id:15430 Streptococcus hyovaginalis str. SHV515 DSM 12219
2.30.7.21.6 STC.SALIVARIUS_SUBGROUP 49 seqs
2.30.7.21.6.3246 OTU 1 seq
prokMSA_id:50264 Streptococcus ratti strain ATCC19645
2.30.7.21.6.3253 OTU 1 seq
prokMSA_id:67823 clone 32CR complete 
2.30.7.21.6.3250 OTU 13 seqs
prokMSA_id:15478 Streptococcus bovis ATCC 33317
prokMSA_id:15484 Streptococcus infantarius str. HDP90104; SLB
prokMSA_id:15485 Streptococcus bovis ATCC 27960
prokMSA_id:15486 Streptococcus equinus NCTC 9814
prokMSA_id:24015 Streptococcus infantarius subsp. infantarius 
prokMSA_id:25587 Streptococcus bovis 
prokMSA_id:30971 Streptococcus luteciae strain NEM 760
prokMSA_id:36122 Streptococcus bovis strain NCTC11436
prokMSA_id:36638 Streptococcus sp. LRC 0476 
prokMSA_id:38058 Streptococcus infantarius subsp. coli 
prokMSA_id:39742 Streptococcus bovis strain B315 
prokMSA_id:51368 Streptococcus equinus strain ATCC 9812
prokMSA_id:71159 Streptococcus equinus NCDO1037T complete 
2.30.7.21.6.3313 OTU 8 seqs
prokMSA_id:15459 Streptococcus salivarius str. C699 ATCC 13419
prokMSA_id:23153 Streptococcus sp. clone KL-48-1-4 
prokMSA_id:31326 Streptococcus sp. clone KL-27-1-5 
prokMSA_id:41340 Streptococcus sp. clone KL-86-2-9 
prokMSA_id:56634 Streptococcus salivarius 
prokMSA_id:80065 Streptococcus vestibularis strain ATCC 49124 complete 
prokMSA_id:80129 Streptococcus salivarius strain ATCC 7073 complete 
prokMSA_id:80926 Streptococcus thermophilus strain ATCC 19258 complete 
2.30.7.21.6.3380 OTU 2 seqs
prokMSA_id:27408 Streptococcus macacae strain NCTC11558
prokMSA_id:80258 Streptococcus macacae strain ATCC 35911 complete 
2.30.7.21.6.3389 OTU 1 seq
prokMSA_id:43122 Streptococcus criceti strain ATCC19642
2.30.7.21.6.3397 OTU 5 seqs
prokMSA_id:15436 Streptococcus macedonicus str. LAB617 ACA-DC 206
prokMSA_id:15446 Streptococcus waiu str. 3/1; NZRCC 20100
prokMSA_id:42690 Streptococcus sp. LRC 0253 
prokMSA_id:46517 Streptococcus sp. LRC 0255 
prokMSA_id:58771 Streptococcus macedonicus 
2.30.7.21.6.3422 OTU 5 seqs
prokMSA_id:15434 Streptococcus thermophilus DSM 20617
prokMSA_id:42918 Streptococcus sp. clone KL-94-1-12 
prokMSA_id:67808 Streptococcus sp. CR-314S clone crev-4 
prokMSA_id:69863 clone 39CR complete 
prokMSA_id:70173 Human oral C23 
2.30.7.21.6.3481 OTU 1 seq
prokMSA_id:71312 human infant N108E 
2.30.7.21.6.3543 OTU 1 seq
prokMSA_id:15451 Streptococcus gallolyticus ACM 3969
2.30.7.21.6.3588 OTU 2 seqs
prokMSA_id:72603 Streptococcus downei strain NCTC11391
prokMSA_id:80847 Streptococcus downei strain ATCC 33748 complete AY188350
2.30.7.21.6.3741 OTU 3 seqs
prokMSA_id:15444 Streptococcus sobrinus NCTC 12279
prokMSA_id:70509 Streptococcus sobrinus strain 6715 
prokMSA_id:80496 Streptococcus sobrinus strain ATCC 33478 complete 
2.30.7.21.6.3863 OTU 1 seq
prokMSA_id:15483 Streptococcus KN1 str. KN1
2.30.7.21.6.3906 OTU 5 seqs
prokMSA_id:15437 Streptococcus bovis ATCC 43143
prokMSA_id:19466 clone p-4289-4Wa3 
prokMSA_id:29347 Streptococcus pasteuri strain NEM1205 CIP 105073
prokMSA_id:39559 mpn-isolate group 11 
prokMSA_id:44756 Streptococcus pasteuri strain NEM1202 CIP 105070
2.30.7.21.7 STC.CONSTELLATUS_SUBGROUP 17 seqs
2.30.7.21.7.3499 OTU 17 seqs
prokMSA_id:15500 Streptococcus intermedius str. 125
prokMSA_id:15501 Streptococcus intermedius str. 488
prokMSA_id:15502 Streptococcus intermedius str. 535
prokMSA_id:15503 Streptococcus intermedius str. 539
prokMSA_id:15504 Streptococcus constellatus ATCC 27823
prokMSA_id:15505 Streptococcus constellatus str. 206
prokMSA_id:15569 Streptococcus sanguinis ATCC 10556
prokMSA_id:38234 Streptococcus sanguis strain ATCC 10556
prokMSA_id:58288 Streptococcus sanguinis strain ChDC OS38 
prokMSA_id:58297 Streptococcus sanguinis strain ChDC B203 
prokMSA_id:87435 Streptococcus constellatus strain 15 AY277939
prokMSA_id:87453 Streptococcus constellatus strain 919 AY277941
prokMSA_id:87466 Streptococcus constellatus strain 1192 AY277940
prokMSA_id:87550 Streptococcus constellatus strain 857 AY277938
prokMSA_id:87569 Streptococcus constellatus strain 1259 AY277942
prokMSA_id:87920 Streptococcus constellatus strain 1 AY277937
prokMSA_id:94436 Firmicute clone S15B-MN51 AJ583202
2.30.7.21.8 STC.SUIS_SUBGROUP 60 seqs
2.30.7.21.8.3305 OTU 1 seq
prokMSA_id:26896 Streptococcus sp. S369-98-1 
2.30.7.21.8.3340 OTU 1 seq
prokMSA_id:15509 clone T46
2.30.7.21.8.3446 OTU 5 seqs
prokMSA_id:15510 clone T44
prokMSA_id:35624 Streptococcus suis strain SAP 77 complete 
prokMSA_id:36287 Streptococcus bovis NCDO2127 
prokMSA_id:51661 sheep mite Welshpool 44 
prokMSA_id:78372 Streptococcus bovis strain HJ50 
2.30.7.21.8.3560 OTU 1 seq
prokMSA_id:63461 Streptococcus gallinaceus strain CCUG42692T
2.30.7.21.8.3637 OTU 1 seq
prokMSA_id:70091 str. 37236 
2.30.7.21.8.3709 OTU 1 seq
prokMSA_id:15540 Streptococcus suis str. EA1832.92
2.30.7.21.8.3753 OTU 50 seqs
prokMSA_id:15508 Streptococcus suis str. S735 NCTC 10234
prokMSA_id:15511 Streptococcus suis str. 5428
prokMSA_id:15512 Streptococcus suis str. 4961
prokMSA_id:15513 Streptococcus suis str. 6407
prokMSA_id:15514 Streptococcus suis str. 14636
prokMSA_id:15515 Streptococcus suis str. 22083
prokMSA_id:15516 Streptococcus suis str. 4417
prokMSA_id:15517 Streptococcus suis str. 12814
prokMSA_id:15518 Streptococcus suis str. 88308. AF009487
prokMSA_id:15519 Streptococcus suis str. 13730
prokMSA_id:15520 Streptococcus suis NCTC 1046. AF009490
prokMSA_id:15521 Streptococcus suis str. 2726
prokMSA_id:15522 Streptococcus suis str. 93A
prokMSA_id:15523 Streptococcus suis str. NT77
prokMSA_id:15524 Streptococcus suis str. 42A
prokMSA_id:15525 Streptococcus suis str. 14A
prokMSA_id:15529 Streptococcus suis str. 89-2479
prokMSA_id:15530 Streptococcus suis str. 88-5299A
prokMSA_id:15531 Streptococcus suis str. 89-3576
prokMSA_id:15532 Streptococcus suis str. 89-5259
prokMSA_id:15533 Streptococcus suis str. 89-590
prokMSA_id:15534 Streptococcus suis str. 92-1191
prokMSA_id:15535 Streptococcus suis str. 92-4172
prokMSA_id:15536 Streptococcus suis str. 88-5299A
prokMSA_id:15537 Streptococcus suis str. 89-3576-3
prokMSA_id:15539 Streptococcus suis str. 89-5259
prokMSA_id:15541 Streptococcus suis str. S735 ATCC 43765
prokMSA_id:15542 Streptococcus suis str. 11538
prokMSA_id:15543 Streptococcus suis str. 2524
prokMSA_id:15544 Streptococcus suis str. 10581
prokMSA_id:15547 Streptococcus suis str. 92-1400
prokMSA_id:18069 Streptococcus suis cds strain:211 AB071344
prokMSA_id:19499 Streptococcus suis cds strain:222 AB071346
prokMSA_id:20126 Streptococcus suis complete 
prokMSA_id:20455 Streptococcus suis cds strain:220 AB071345
prokMSA_id:23271 Streptococcus suis cds strain:203 AB071341
prokMSA_id:24173 Streptococcus suis cds strain:193 AB071339
prokMSA_id:27714 Streptococcus suis cds strain:235 AB071349
prokMSA_id:29146 Streptococcus suis cds strain:226
prokMSA_id:29179 Streptococcus suis cds strain:243 AB071350
prokMSA_id:29248 Streptococcus suis complete 
prokMSA_id:31821 clone p-4747-2Wb2 
prokMSA_id:33693 Streptococcus suis cds strain:209 AB071342
prokMSA_id:34124 Streptococcus suis cds strain:228 AB071348
prokMSA_id:34509 Streptococcus suis cds strain:194
prokMSA_id:36314 Streptococcus suis cds strain:NIAH11318 AB071338
prokMSA_id:46648 Streptococcus suis cds strain:210 AB071343
prokMSA_id:49657 Streptococcus suis cds strain:DAT2 AB071337
prokMSA_id:51021 Streptococcus suis complete 
prokMSA_id:51591 Streptococcus suis cds strain:DAT1 AB071336
2.30.7.21.9 STC.PNEUMONIAE_SUBGROUP 88 seqs
2.30.7.21.9.3251 OTU 4 seqs
prokMSA_id:15567 Streptococcus cristatus str. CR311 NCTC 12479
prokMSA_id:53864 Streptococcus sp. oral strain B5SC 
prokMSA_id:66308 Streptococcus oligefermentans 
prokMSA_id:80267 Streptococcus cristatus strain ATCC 51100 complete AY188347
2.30.7.21.9.3287 OTU 1 seq
prokMSA_id:47073 Streptococcus sp. oral clone FP015 
2.30.7.21.9.3290 OTU 56 seqs
prokMSA_id:15551 Streptococcus infantis str. O-122 JCM 10157
prokMSA_id:15552 Streptococcus mitis NCTC 12261
prokMSA_id:15554 Streptococcus oralis str. PB 182 ATCC 35037
prokMSA_id:15568 Streptococcus mitis ATCC 49456
prokMSA_id:15572 Streptococcus pneumoniae ATCC 33400
prokMSA_id:15573 Streptococcus pneumoniae MAFF 911410
prokMSA_id:18951 Streptococcus pneumoniae R6 section 168 of 184 of the comple
prokMSA_id:26554 Streptococcus sp. NJ9704 
prokMSA_id:26707 Streptococcus sp. 2061A 
prokMSA_id:27308 Streptococcus sp. oral clone AA007 
prokMSA_id:28885 Streptococcus sp. oral strain 7A 
prokMSA_id:36398 Streptococcus sp. oral clone CH016 
prokMSA_id:37656 Streptococcus mitis AF479580
prokMSA_id:39626 Streptococcus sp. 3170A AF316595
prokMSA_id:41742 Streptococcus mitis strain 127R AJ295848
prokMSA_id:41889 Streptococcus sp. 3097C 
prokMSA_id:42006 Streptococcus sp. PSH2 
prokMSA_id:45312 Streptococcus pneumoniae R6 section 2 of 184 of the complete
prokMSA_id:46365 Streptococcus mitis strain 209 AJ295853
prokMSA_id:47428 Streptococcus pneumoniae R6 section 162 of 184 of the comple
prokMSA_id:48329 Streptococcus pneumoniae R6 section 153 of 184 of the comple
prokMSA_id:52668 Streptococcus pneumoniae R6 complete genome NC_003098
prokMSA_id:53325 Streptococcus pneumoniae complete genome
prokMSA_id:58287 Streptococcus mitis 
prokMSA_id:59561 Streptococcus sp. oral strain 12F 
prokMSA_id:59566 Streptococcus sp. oral clone FX003 
prokMSA_id:69773 Streptococcus sp. oral clone BW009 
prokMSA_id:70487 Streptococcus sp. 4093B 
prokMSA_id:70803 Streptococcus sp. oral clone DP009 
prokMSA_id:70877 Streptococcus sp. oral clone DN025 
prokMSA_id:71055 Streptococcus sp. oral clone BM035 
prokMSA_id:71395 Streptococcus sp. oral clone EK048 
prokMSA_id:71752 Streptococcus mitis bv2 
prokMSA_id:72273 Streptococcus sp. 2056B AF316593
prokMSA_id:72990 Streptococcus sp. oral strain T4-E3 
prokMSA_id:73251 Streptococcus sp. oral strain H6 
prokMSA_id:73545 Streptococcus sp. oral strain T1-E5 
prokMSA_id:73592 Streptococcus sp. oral strain H3-M2 
prokMSA_id:81302 clone KM46 
prokMSA_id:82688 Streptococcus sp. oral clone P4PA_30 P4 
prokMSA_id:83689 Streptococcus sp. oral clone P4PA_13 P3 
prokMSA_id:84858 Streptococcus sp. oral clone P2PA_41 P2 
prokMSA_id:86104 Streptococcus sp
prokMSA_id:86805 Streptococcus genomosp. C4 AY278632
prokMSA_id:87053 Streptococcus genomosp. C8 AY278609
prokMSA_id:88146 Streptococcus mitis ATCC 6249 AY281077
prokMSA_id:88205 Streptococcus mitis ATCC 15914 AY281076
prokMSA_id:88323 Streptococcus sanguinis ATCC 49296 AY281086
prokMSA_id:88494 Streptococcus pneumoniae ATCC 6303 AY281084
prokMSA_id:88719 Streptococcus pneumoniae ATCC 49619 AY281082
prokMSA_id:89429 Streptococcus pneumoniae ATCC 700669 AY281081
prokMSA_id:89930 Streptococcus oralis ATCC 9811 AY281079
prokMSA_id:90116 Streptococcus oralis ATCC 700233 AY281080
prokMSA_id:90432 Streptococcus sanguinis ATCC 29667 AY281085
prokMSA_id:90442 Streptococcus pneumoniae ATCC BAA-334 AY281083
prokMSA_id:94837 Firmicute clone S15B-MN30 AJ583201
2.30.7.21.9.3629 OTU 18 seqs
prokMSA_id:15565 Streptococcus mutans NCTC 10449
prokMSA_id:51371 Human oral C29 
prokMSA_id:55433 Streptococcus mutans strain UA96 ; tRNA-Ala complete ; 23S c
prokMSA_id:57764 Streptococcus mutans UA159 section 171 of 185 of the complet
prokMSA_id:57765 Streptococcus mutans UA159 section 154 of 185 of the complet
prokMSA_id:57766 Streptococcus mutans UA159 section 151 of 185 of the complet
prokMSA_id:57767 Streptococcus mutans UA159 section 17 of 185 of the complete
prokMSA_id:57768 Streptococcus mutans UA159 section 2 of 185 of the complete 
prokMSA_id:69287 Streptococcus mutans strain UA140 ; tRNA-Ala complete ; 23S 
prokMSA_id:69297 Streptococcus mutans strain AF199 ; tRNA-Ala complete ; 23S 
prokMSA_id:72123 Streptococcus mutans strain 669 ; tRNA-Ala complete ; 23S co
prokMSA_id:72641 Streptococcus mutans strain LM7 ; tRNA-Ala complete ; 23S co
prokMSA_id:80416 Streptococcus mutans strain ATCC 25175 complete AY188348
prokMSA_id:81367 Streptococcus mutans strain LM7 complete AF077832
prokMSA_id:81591 Streptococcus mutans strain UA96 complete 
prokMSA_id:81886 Streptococcus mutans strain AF199 complete AF077833
prokMSA_id:82180 Streptococcus mutans strain 669 complete AF077834
prokMSA_id:82224 Streptococcus mutans strain UA140 complete 
2.30.7.21.9.3685 OTU 6 seqs
prokMSA_id:15563 Streptococcus gordonii str. SK 3 ATCC 10558
prokMSA_id:15576 Streptococcus mitis str. SK 51 NCTC 3165
prokMSA_id:36023 Streptococcus gordonii strain DL1
prokMSA_id:50550 Streptococcus sp. oral clone AY020 
prokMSA_id:58289 Streptococcus sp. ChDC OS37 
prokMSA_id:62977 Streptococcus sp. clone T10-23 rrn 
2.30.7.21.9.3774 OTU 1 seq
prokMSA_id:15564 clone v2
2.30.7.21.9.3796 OTU 1 seq
prokMSA_id:15570 clone v3
2.30.7.21.9.3800 OTU 1 seq
prokMSA_id:15571 clone v5
2.30.8 MYCOPLASMA_AND_RELATIVES 658 seqs
2.30.8.2 ACHOLEPLASMA-ANAEROPLASMA_GROUP 348 seqs
2.30.8.2.1 MYCOPLASMA-LIKE-ORGANISM_SUBGROUP_I 187 seqs
2.30.8.2.1.3932 OTU 2 seqs
prokMSA_id:15647 unnamed organism
prokMSA_id:72848 Phytoplasma sp. strain LD
2.30.8.2.1.3937 OTU 5 seqs
prokMSA_id:63016 Cynodon white leaf phytoplasma 
prokMSA_id:69014 Bermuda grass white leaf phytoplasma complete ; tRNA-Ile com
prokMSA_id:83287 Bermuda grass white leaf phytoplasma isolate BGWL-C2
prokMSA_id:83541 Bermuda grass white leaf phytoplasma isolate BGWL-CA
prokMSA_id:86379 Bermuda grass white leaf phytoplasma isolate BGWL-C1
2.30.8.2.1.3948 OTU 1 seq
prokMSA_id:64533 Candidatus Phytoplasma phoeniceum strain 21 ; 16-23S interge
2.30.8.2.1.3955 OTU 1 seq
prokMSA_id:64303 Weeping tea tree witches'-broom phytoplasma complete ; tRNA-
2.30.8.2.1.3961 OTU 1 seq
prokMSA_id:15644 unnamed organism
2.30.8.2.1.3963 OTU 3 seqs
prokMSA_id:48457 Loofah witches'-broom phytoplasma strain LfWB clone 1 operon
prokMSA_id:69009 Loofah witches'-broom phytoplasma tRNA-Ile complete ; 23S ; 
prokMSA_id:69018 Loofah witches'-broom phytoplasma complete ; tRNA-Ile comple
2.30.8.2.1.3976 OTU 6 seqs
prokMSA_id:15598 Phytoplasma Virginia grapevine yellows phytoplasma VGYIII st
prokMSA_id:17222 Black locust witches'-broom phytoplasma operon 
prokMSA_id:18521 Walnut witches' broom phytoplasma operon B 
prokMSA_id:33747 Poinsettia branch-inducing phytoplasma operon 
prokMSA_id:38010 Spiraea stunt phytoplasma operon A 
prokMSA_id:51281 Walnut witches' broom phytoplasma operon A 
2.30.8.2.1.3975 OTU 5 seqs
prokMSA_id:15597 str. CYE-C
prokMSA_id:15599 Phytoplasma Clover yellow edge phytoplasma str. CYE-L
prokMSA_id:37584 Strawberry leafy fruit phytoplasma 
prokMSA_id:38649 Black raspberry witches'-broom phytoplasma clone BRWB7 opero
prokMSA_id:62836 Gaillardia phyllody phytoplasma ; tRNA-Ile complete ; and 23
2.30.8.2.1.3989 OTU 6 seqs
prokMSA_id:15610 unnamed organism
prokMSA_id:15639 unnamed organism
prokMSA_id:15645 unnamed organism
prokMSA_id:18103 Peach yellow leafroll mycoplasmalike organism 
prokMSA_id:18863 Western X mycoplasmalike organism 
prokMSA_id:43388 Chokecherry X disease mycoplasmalike organism 
2.30.8.2.1.4004 OTU 1 seq
prokMSA_id:15582 unnamed organism
2.30.8.2.1.4017 OTU 1 seq
prokMSA_id:24669 Sugarcane phytoplasma C 
2.30.8.2.1.4033 OTU 2 seqs
prokMSA_id:15579 unnamed organism
prokMSA_id:21474 Beet leafhopper transmitted virescence mycoplasmalike organi
2.30.8.2.1.4039 OTU 2 seqs
prokMSA_id:15643 unnamed organism
prokMSA_id:52553 Potato witches'-broom mycoplasmalike organism 
2.30.8.2.1.4045 OTU 14 seqs
prokMSA_id:15584 str. tsuwabuki witches' broom
prokMSA_id:53311 Chayote witches' broom phytoplasma ChWBIII strain ChWBIIIMor
prokMSA_id:54971 Chayote witches' broom phytoplasma ChWBIII strain ChWBIIICh1
prokMSA_id:55569 Tsuwabuki witches'-broom phytoplasma 
prokMSA_id:58988 Garlic Decline Phytoplasma -23S intergenic spacer region and
prokMSA_id:58989 China-tree decline phytoplasma -23S intergenic spacer region
prokMSA_id:63392 Phytoplasma sp. PY3 
prokMSA_id:66027 Blueberry proliferation phytoplasma ; tRNA-Ile complete ; an
prokMSA_id:66819 Cirsium white leaf phytoplasma operon B 
prokMSA_id:66824 Dandelion virescence phytoplasma operon A 
prokMSA_id:67362 Chinaberry yellows phytoplasma ; tRNA-Ile complete ; and 23S
prokMSA_id:69885 Sugarcane yellows phytoplasma I strain ScYP I-Barb ; tRNA-Il
prokMSA_id:73130 Sugarcane yellows phytoplasma I strain ScYP I-Afr ; tRNA-Ile
prokMSA_id:87775 Milkweed yellows phytoplasma ; -23S intergenic spacer region
2.30.8.2.1.4041 OTU 5 seqs
prokMSA_id:15638 unnamed organism
prokMSA_id:23748 Florida Pandanus decline phytoplasma AF361020
prokMSA_id:65941 Coconut lethal yellowing phytoplasma strain Florida LY-C2 AF
prokMSA_id:65943 Coconut lethal yellowing phytoplasma strain Florida LYF-C5 
prokMSA_id:65944 Coconut lethal yellowing phytoplasma strain Jamaica LYJ-C8 
2.30.8.2.1.4044 OTU 6 seqs
prokMSA_id:15591 unnamed organism. L33733
prokMSA_id:15594 unnamed organism
prokMSA_id:18269 Red suture phytoplasma 
prokMSA_id:48082 Little peach phytoplasma 
prokMSA_id:52044 Peach rosette phytoplasma 
prokMSA_id:83476 Western X phytoplasma tRNA-Ser complete ; immunodominant pro
2.30.8.2.1.4046 OTU 4 seqs
prokMSA_id:15583 unnamed organism. L33735
prokMSA_id:55620 Lactuca serriola phytoplasma strain P12 ; 16-23S intergenic 
prokMSA_id:63013 Sorghum grassy shoot phytoplasma variant II 
prokMSA_id:63014 Sorghum grassy shoot phytoplasma variant I 
2.30.8.2.1.4053 OTU 3 seqs
prokMSA_id:15613 Phytoplasma sp. str. StLL
prokMSA_id:24602 Sugarcane phytoplasma J StLL 
prokMSA_id:69575 Stylosanthes little leaf phytoplasma and tRNA-Ile genes
2.30.8.2.1.4052 OTU 2 seqs
prokMSA_id:15601 unnamed organism
prokMSA_id:22080 Elm yellows mycoplasmalike organism in Chinese elm 
2.30.8.2.1.4054 OTU 2 seqs
prokMSA_id:15590 Phytoplasma sp. str. ViLL
prokMSA_id:25555 Vigna little leaf phytoplasma 
2.30.8.2.1.4060 OTU 10 seqs
prokMSA_id:15585 unnamed organism
prokMSA_id:43871 Carludovica palmata leaf yellowing phytoplasma AF237615
prokMSA_id:64249 Phytoplasma sp. LfY5PE65-Oaxaca 
prokMSA_id:64250 Phytoplasma sp. LfY5PE56-Oaxaca AF500333
prokMSA_id:64251 Phytoplasma sp. LfY4MA5-Oaxaca 
prokMSA_id:64252 Phytoplasma sp. LfY1-Guerrero 
prokMSA_id:64253 Phytoplasma sp. LfY4MA3-Oaxaca 
prokMSA_id:64254 Phytoplasma sp. LfY2Alv2-Guerrero 
prokMSA_id:68903 Texas Phoenix palm phytoplasma ; tRNA-Ile complete ; and 23S
prokMSA_id:72718 Yucatan coconut lethal decline phytoplasma 
2.30.8.2.1.4066 OTU 1 seq
prokMSA_id:15641 Phytoplasma sp. str. GaLL
2.30.8.2.1.4070 OTU 3 seqs
prokMSA_id:15588 Phytoplasma Knautia arvensis phyllody phytoplasma
prokMSA_id:26945 Honduran Gliricidia little leaf phytoplasma AF361017
prokMSA_id:92236 Phaseolus lunatus phytoplasma similar to and -23S intergenic
2.30.8.2.1.4078 OTU 1 seq
prokMSA_id:54260 Hibiscus witches'-broom phytoplasma strain HibWB26 -23S inte
2.30.8.2.1.4083 OTU 1 seq
prokMSA_id:53611 Phytoplasma sp. PinP intergenic spacer and tRNA-Ile 
2.30.8.2.1.4084 OTU 1 seq
prokMSA_id:15586 Mycoplasma sp. str. VAC
2.30.8.2.1.4086 OTU 1 seq
prokMSA_id:15589 Phytoplasma Picris echioides yellows phytoplasma
2.30.8.2.1.4108 OTU 2 seqs
prokMSA_id:15627 str. rice yellow dwarf
prokMSA_id:62521 Rice yellow dwarf phytoplasma 
2.30.8.2.1.4115 OTU 24 seqs
prokMSA_id:15580 unnamed organism. U15442
prokMSA_id:15581 Phytoplasma Picris echioides phyllody phytoplasma. Y16393
prokMSA_id:15592 unnamed organism. L33765
prokMSA_id:15609 unnamed organism. L33770
prokMSA_id:15615 Mycoplasma sp. str. SUNHP
prokMSA_id:15617 unnamed organism
prokMSA_id:15618 Phytoplasma sp
prokMSA_id:15619 unnamed organism. Y10096
prokMSA_id:15620 unnamed organism
prokMSA_id:15621 Phytoplasma Gph subsp. Gerbera phyllody phytoplasma str. GPh
prokMSA_id:15622 Phytoplasma Chinese pigeon pea witches'-broom phytoplasma
prokMSA_id:15624 unnamed organism
prokMSA_id:15625 Phytoplasma Italian alfalfa witches-broom phytoplasma
prokMSA_id:15626 Phytoplasma sp. str. BoLL
prokMSA_id:18469 Phytoplasma sp. pathovar mosaic-inducing complete 
prokMSA_id:20350 Potato purple top phytoplasma AF329315
prokMSA_id:28401 Cactus phytoplasma 'Martinez-Soriano 1999' complete 
prokMSA_id:41747 Pigeon pea little leaf phytoplasma 
prokMSA_id:42358 Cactus witches'-broom phytoplasma isolate YNO1
prokMSA_id:48933 Sweet potato little leaf phytoplasma strain V4
prokMSA_id:58026 'Vinca minor' phytoplasma 
prokMSA_id:60303 Omani alfalfa witches'-broom phytoplasma complete 
prokMSA_id:73858 Cocky apple witches' broom phytoplasma tRNA-Ile and 
prokMSA_id:96747 Alfalfa witches'-broom phytoplasma -23S intergenic spacer tR
2.30.8.2.1.4127 OTU 65 seqs
prokMSA_id:15593 unnamed organism
prokMSA_id:15602 str. FD
prokMSA_id:15603 str. EY1
prokMSA_id:15604 Phytoplasma Elm yellows phytoplasma str. EY1
prokMSA_id:15605 Phytoplasma Elm yellows phytoplasma str. WVEY
prokMSA_id:15606 Phytoplasma HD1 str. HD1
prokMSA_id:15607 Phytoplasma Alder yellows phytoplasma
prokMSA_id:15608 Phytoplasma Rubus stunt phytoplasma
prokMSA_id:15611 unnamed organism
prokMSA_id:15612 Phytoplasma 'Fragaria multicipita' phytoplasma str. FRA9083
prokMSA_id:15614 unnamed organism
prokMSA_id:15623 str. ULW
prokMSA_id:15628 unnamed organism
prokMSA_id:15630 str. ASHY
prokMSA_id:15631 str. AshY1
prokMSA_id:15632 Phytoplasma Ash yellows phytoplasma str. AshY1
prokMSA_id:15633 Phytoplasma Ash yellows phytoplasma str. AshY3
prokMSA_id:15634 Phytoplasma Ash yellows phytoplasma str. AshY5
prokMSA_id:15635 Phytoplasma Ash yellows phytoplasma str. LWB3
prokMSA_id:17967 Alder yellows phytoplasma 
prokMSA_id:20661 'Fragaria multicipita' phytoplasma operon A 
prokMSA_id:25887 Flavescence doree phytoplasma operon 
prokMSA_id:42718 Zizyphus jujube witches'-broom phytoplasma 
prokMSA_id:43247 'Fragaria multicipita' phytoplasma operon B 
prokMSA_id:45354 Clover proliferation phytoplasma AF363066
prokMSA_id:50829 Clover proliferation phytoplasma strain EY-IL 2 
prokMSA_id:52099 Clover proliferation phytoplasma strain EY-IL 1 
prokMSA_id:54286 Ziziphus jujube witches'-broom phytoplasma ; -23S intergenic
prokMSA_id:55407 Ziziphus jujube witches'-broom phytoplasma ; and tRNA-Ile co
prokMSA_id:60512 Erigeron witches'-broom phytoplasma strain RPWB ; -23S inter
prokMSA_id:66024 Erigeron witches'-broom phytoplasma ; tRNA-Ile complete ; an
prokMSA_id:68906 Brinjal little leaf phytoplasma complete ; and tRNA-Ile comp
prokMSA_id:69030 Periwinkle little leaf phytoplasma complete ; and tRNA-Ile c
prokMSA_id:69629 Virginia creeper phytoplasma ; and tRNA-Ile complete 
prokMSA_id:69655 Elm phytoplasma 'Arlington Heights' ; tRNA-Ile complete ; an
prokMSA_id:77772 Phytoplasma sp. JWB-Ko 
prokMSA_id:77969 Phytoplasma sp. JWB-F 
prokMSA_id:78043 Phytoplasma sp. JWB-G2 
prokMSA_id:78260 Phytoplasma sp. JWB-G1 
prokMSA_id:78322 Phytoplasma sp. JWB-Ky 
prokMSA_id:80823 Potato witches'-broom phytoplasma -23S intergenic spacer reg
prokMSA_id:82781 Centaurea solstitialis virescence phytoplasma complete ; tRN
prokMSA_id:86747 Alder yellows phytoplasma strain ALY882 AY197642
prokMSA_id:86755 Rubus stunt phytoplasma strain Rus400 AY197649
prokMSA_id:86783 Sunshine tree witches'-broom phytoplasma AY283184
prokMSA_id:86811 Peach yellows phytoplasma strain PY-In AY197660
prokMSA_id:86835 Cherry lethal yellows phytoplasma strain CLY-5 AY197659
prokMSA_id:86864 Flavescence doree phytoplasma strain FD70 AY197643
prokMSA_id:86960 Elm yellows phytoplasma strain EY-627 AY197658
prokMSA_id:87003 Flavescence doree phytoplasma strain FD-C AY197645
prokMSA_id:87073 Elm yellows phytoplasma strain EY-626 AY197657
prokMSA_id:87229 Spartium witches'-broom phytoplasma strain SpaWB251 AY197653
prokMSA_id:87307 Elm yellows phytoplasma strain EY1 AY197655
prokMSA_id:87317 Alder yellows phytoplasma strain ALY1068 AY197647
prokMSA_id:87456 Jujube witches'-broom phytoplasma strain JWB AY197661
prokMSA_id:87547 Flavescence doree phytoplasma strain FD-D AY197644
prokMSA_id:87635 Alder yellows phytoplasma strain ALY AY197646
prokMSA_id:87732 Hemp dogbane yellows phytoplasma strain HD1 AY197654
prokMSA_id:87774 Rubus stunt phytoplasma strain Rus971 AY197650
prokMSA_id:87911 Rubus stunt phytoplasma strain RuSR19 AY197651
prokMSA_id:87917 Elm yellows phytoplasma strain EY-125 AY197656
prokMSA_id:87980 Rubus stunt phytoplasma strain RUS AY197648
prokMSA_id:88039 Spartium witches'-broom phytoplasma strain SpaWB229 AY197652
prokMSA_id:91186 Nectarine yellows phytoplasma strain NecY-In1 AY332659
prokMSA_id:91757 Peach yellows phytoplasma strain PY-In2 AY332658
2.30.8.2.1.4138 OTU 1 seq
prokMSA_id:23582 Ethiopian Gliricidia little leaf phytoplasma 
2.30.8.2.1.4139 OTU 1 seq
prokMSA_id:15636 str. SCWL
2.30.8.2.1.4146 OTU 1 seq
prokMSA_id:15646 unnamed organism
2.30.8.2.1.4147 OTU 2 seqs
prokMSA_id:15648 Phytoplasma sp. str. Coconut lethal yellowing disease
prokMSA_id:15649 Phytoplasma sp. str. Coconut lethal yellowing disease. Y1417
2.30.8.2.1.4145 OTU 1 seq
prokMSA_id:15640 Mycoplasma sp. str. BVK
2.30.8.2.2 MYCOPLASMA-LIKE-ORGANISM_SUBGROUP_II 20 seqs
2.30.8.2.2.3938 OTU 2 seqs
prokMSA_id:15662 str. Apple proliferation
prokMSA_id:27932 Apple proliferation MLO 
2.30.8.2.2.4002 OTU 2 seqs
prokMSA_id:15651 Phytoplasma sp
prokMSA_id:93038 Apple proliferation phytoplasma isolate SPAR701 AJ430067
2.30.8.2.2.4003 OTU 1 seq
prokMSA_id:15653 unnamed organism
2.30.8.2.2.4059 OTU 2 seqs
prokMSA_id:15652 str. ACLR
prokMSA_id:44020 Apricot chlorotic leafroll mycoplasmalike organism 
2.30.8.2.2.4064 OTU 13 seqs
prokMSA_id:15654 str. PPER
prokMSA_id:15655 Phytoplasma sp. str. ESFY
prokMSA_id:15656 Mycoplasma sp
prokMSA_id:15657 Phytoplasma Pear decline phytoplasma
prokMSA_id:15658 Phytoplasma Peach yellow leafroll phytoplasma
prokMSA_id:15659 Mycoplasma sp. str. PD
prokMSA_id:15661 Candidatus Phytoplasma mali IGS1 tRNA-Ile and 23S strain AT
prokMSA_id:33402 Pear decline phytoplasma isolate PDE15 
prokMSA_id:54668 European stone fruit yellows phytoplasma and 23S genes 
prokMSA_id:69015 Apple proliferation phytoplasma complete ; tRNA-Ile complete
prokMSA_id:86991 Candidatus Phytoplasma prunorum tRNA-Ile and 23S strain ESFY
prokMSA_id:87313 Candidatus Phytoplasma prunorum tRNA-Ile and 23S strain ESFY
prokMSA_id:88051 Candidatus Phytoplasma pyri tRNA-Ile and 23S strain PD1 AJ54
2.30.8.2.3 MYCOPLASMA-LIKE-ORGANISM_SUBGROUP_III 65 seqs
2.30.8.2.3.3945 OTU 49 seqs
prokMSA_id:15663 unnamed organism
prokMSA_id:15677 str. onion yellows; tomato yellows mulberry dwarf; Paulownia
prokMSA_id:15679 str. ACLR
prokMSA_id:15680 str. SAY
prokMSA_id:15681 Phytoplasma Alfalfa stunt phytoplasma str. AlfS
prokMSA_id:15682 Phytoplasma sp. str. rape phylody
prokMSA_id:15683 Phytoplasma STRAWB2 str. STRAWB2
prokMSA_id:15684 str. KV
prokMSA_id:15685 unnamed organism
prokMSA_id:15687 str. AAY
prokMSA_id:17288 Cactus phytoplasma 'Martinez-Soriano 2001' 
prokMSA_id:18665 Phytoplasma sp. PY1 
prokMSA_id:20556 Sugarcane phytoplasma G AY 
prokMSA_id:21066 Potato purple top phytoplasma 
prokMSA_id:21501 Clover phyllody phytoplasma strain CPh operon B 
prokMSA_id:21611 Paulownia witches'-broom phytoplasma 
prokMSA_id:21676 Aster yellows phytoplasma operon 
prokMSA_id:28502 Aster yellows phytoplasma strain AY1 clone 10 operon B 
prokMSA_id:30043 Aster yellows phytoplasma A isolate 98UW166A 
prokMSA_id:31795 Tomato big bud phytoplasma operon 
prokMSA_id:32190 Aster yellows phytoplasma strain AY1 clone 14 operon A 
prokMSA_id:33517 Sugarcane phytoplasma G AY variety Alu2
prokMSA_id:36905 Aster yellows phytoplasma A isolate 98UW159 
prokMSA_id:37239 Aster yellows phytoplasma A isolate 99UW93 
prokMSA_id:42685 Aster yellows phytoplasma 
prokMSA_id:44579 Aster yellows phytoplasma B isolate 99UW89 
prokMSA_id:45677 Aster yellows phytoplasma A isolate 99UW111 
prokMSA_id:46328 Aster yellows phytoplasma B isolate 99UW108 
prokMSA_id:46674 Clover phyllody phytoplasma strain CPh operon A 
prokMSA_id:48464 Aster yellows phytoplasma O isolate 98UW166B 
prokMSA_id:50045 Carrot proliferation phytoplasma 
prokMSA_id:51779 Cirsium yellows phytoplasma 
prokMSA_id:55023 Mulberry dwarf phytoplasma ; -23S intergenic spacer region a
prokMSA_id:55493 Valeriana yellows phytoplasma clone ValY2 operon 
prokMSA_id:56725 Phytoplasma sp. PY1 
prokMSA_id:60545 Epilobium phyllody phytoplasma ; -23S intergenic spacer and 
prokMSA_id:62523 Onion yellows phytoplasma 
prokMSA_id:64235 Valeriana yellows phytoplasma clone ValY1 rrnB operon 
prokMSA_id:66025 Cherry little leaf phytoplasma 
prokMSA_id:66094 Aconitum proliferation phytoplasma ; tRNA-Ile complete ; and
prokMSA_id:68930 'Rehmannia glutinosa var. purpurea' phytoplasma and tRNA-Ile
prokMSA_id:71715 Phytoplasma sp. WDWB-K 
prokMSA_id:76240 Oat proliferation phytoplasma operon 
prokMSA_id:77493 'Helichrysum bracteatum' phytoplasma ; tRNA-Ile complete ; a
prokMSA_id:79786 Paulownia witches'-broom phytoplasma 
prokMSA_id:82346 Maize bushy stunt phytoplasma operon 
prokMSA_id:84985 Marigold phyllody phytoplasma clone RIRM-2003.1 
prokMSA_id:86083 Marigold phyllody phytoplasma clone RIRM-2003.2 
prokMSA_id:87447 Strawberry phylloid fruit phytoplasma AY102275
2.30.8.2.3.3977 OTU 1 seq
prokMSA_id:67193 Chinaberry yellows phytoplasma strain CbY1 ; -23S intergenic
2.30.8.2.3.4028 OTU 1 seq
prokMSA_id:15674 Phytoplasma Bindweed yellows phytoplasma
2.30.8.2.3.4030 OTU 7 seqs
prokMSA_id:15667 Phytoplasma sp. =rrnB operon
prokMSA_id:15668 Mycoplasma sp. str. AGY
prokMSA_id:15669 Phytoplasma Australian grapevine yellows phytoplasma subsp
prokMSA_id:15670 unnamed organism
prokMSA_id:15671 Phytoplasma Strawberry green petal phytoplasma str. SGP
prokMSA_id:15672 Phytoplasma Strawberry lethal yellows phytoplasma str. SLY
prokMSA_id:15675 Phytoplasma sp. = operon
2.30.8.2.3.4043 OTU 2 seqs
prokMSA_id:15686 unnamed organism
prokMSA_id:43213 Paulownia witches'-broom mycoplasmalike organism 
2.30.8.2.3.4092 OTU 1 seq
prokMSA_id:60694 Buckland valley grapevine yellows phytoplasma operon 
2.30.8.2.3.4096 OTU 1 seq
prokMSA_id:15664 unnamed organism
2.30.8.2.3.4101 OTU 1 seq
prokMSA_id:32876 Candidatus Phytoplasma japonicum 
2.30.8.2.3.4105 OTU 2 seqs
prokMSA_id:15666 unnamed organism
prokMSA_id:31476 Blueberry stunt mycoplasmalike organism 
2.30.8.2.5 ACP.LAIDLAWII_SUBGROUP 7 seqs
2.30.8.2.5.3990 OTU 1 seq
prokMSA_id:15689 Acholeplasma oculi ISM 1499
2.30.8.2.5.4005 OTU 1 seq
prokMSA_id:15690 Acholeplasma oculi str. 19L ATCC 27350
2.30.8.2.5.4008 OTU 1 seq
prokMSA_id:15694 unnamed organism
2.30.8.2.5.4055 OTU 3 seqs
prokMSA_id:15691 Acholeplasma laidlawii str. PG8 ATCC 23206
prokMSA_id:15692 Acholeplasma laidlawii str. JA1
prokMSA_id:83638 Mesoplasma pleciae 
2.30.8.2.5.4137 OTU 1 seq
prokMSA_id:15693 clone RFN82
2.30.8.2.6 ACP.MODICUM_SUBGROUP 14 seqs
2.30.8.2.6.3962 OTU 1 seq
prokMSA_id:50779 clone p-3870-23G5 
2.30.8.2.6.3985 OTU 1 seq
prokMSA_id:15700 clone RF39
2.30.8.2.6.3983 OTU 2 seqs
prokMSA_id:21971 Acholeplasma axanthum 
prokMSA_id:30323 Acholeplasma axanthum strain 118 AJ311394
2.30.8.2.6.4000 OTU 1 seq
prokMSA_id:29625 adhufec202 
2.30.8.2.6.4009 OTU 1 seq
prokMSA_id:15696 Mycoplasma feliminutum ATCC 25749
2.30.8.2.6.4010 OTU 1 seq
prokMSA_id:15698 clone RF9
2.30.8.2.6.4025 OTU 1 seq
prokMSA_id:40949 clone p-2601-9F5 
2.30.8.2.6.4074 OTU 1 seq
prokMSA_id:41875 clone p-2013-s959-5 
2.30.8.2.6.4106 OTU 1 seq
prokMSA_id:52403 clone p-3053-SwA5 
2.30.8.2.6.4124 OTU 1 seq
prokMSA_id:71687 adhufec279 
2.30.8.2.6.4126 OTU 1 seq
prokMSA_id:21634 clone p-3025-SwA5 
2.30.8.2.6.4129 OTU 1 seq
prokMSA_id:33343 clone p-3208-42A2 
2.30.8.2.6.4132 OTU 1 seq
prokMSA_id:21042 clone p-974-s962-5 
2.30.8.2.8 C.RAMOSUM_ASSEMBLAGE 14 seqs
2.30.8.2.8.3933 OTU 1 seq
prokMSA_id:51516 CCAJG3 
2.30.8.2.8.3943 OTU 2 seqs
prokMSA_id:36159 Coprobacillus catenaformis strain: JCM 10604
prokMSA_id:74862 Coprobacillus catenaformis strain: JCM 10603
2.30.8.2.8.3956 OTU 1 seq
prokMSA_id:15716 Clostridium spiroforme DSM 1552
2.30.8.2.8.3959 OTU 2 seqs
prokMSA_id:15711 Clostridium cocleatum str. CM972
prokMSA_id:45363 Clostridium cocleatum strain DSM 1551
2.30.8.2.8.3987 OTU 1 seq
prokMSA_id:15710 clone vadinHA31
2.30.8.2.8.3988 OTU 1 seq
prokMSA_id:15713 clone RFN20
2.30.8.2.8.3992 OTU 1 seq
prokMSA_id:15714 clone RFN74
2.30.8.2.8.3993 OTU 1 seq
prokMSA_id:15715 Clostridium spiroforme ATCC 29900
2.30.8.2.8.4065 OTU 2 seqs
prokMSA_id:15709 Clostridium ramosum str. 113-I ATCC 25582
prokMSA_id:15712 Clostridium ramosum str. 113-I ATCC 25582
2.30.8.2.8.4075 OTU 1 seq
prokMSA_id:51691 equine intestinal sp. ML30 clone ML30
2.30.8.2.8.4076 OTU 1 seq
prokMSA_id:21822 Coprobacillus catenaformis strain: JCM 10605
2.30.8.2.9 EUB.CYLINDROIDES_SUBGROUP 41 seqs
2.30.8.2.9.144 OTU 1 seq
prokMSA_id:15720 cylindroides ATCC 27528
2.30.8.2.9.149 OTU 1 seq
prokMSA_id:15724 Streptococcus pleomorphus str. EFB 61/60B ATCC 29734
2.30.8.2.9.196 OTU 1 seq
prokMSA_id:15736 biforme ATCC 27806
2.30.8.2.9.3939 OTU 2 seqs
prokMSA_id:15734 Clostridium innocuum str. B-3 ATCC 14501
prokMSA_id:15735 str. CM970
2.30.8.2.9.3952 OTU 2 seqs
prokMSA_id:77904 Erysipelothrix rhusiopathiae -23S spacer region strain:Pecs 
prokMSA_id:88075 Erysipelothrix inopinata strain 143-02 AJ550617
2.30.8.2.9.3958 OTU 1 seq
prokMSA_id:27366 equine intestinal sp. MW03 clone MW03
2.30.8.2.9.3965 OTU 2 seqs
prokMSA_id:59904 low G+C Gram-positive clone ccslm238 
prokMSA_id:89878 Mollicutes pACH93 AY297808
2.30.8.2.9.3981 OTU 1 seq
prokMSA_id:60757 low G+C Gram-positive clone PSB-M-3 
2.30.8.2.9.3986 OTU 1 seq
prokMSA_id:54730 clone p-2772-24E5 
2.30.8.2.9.4006 OTU 1 seq
prokMSA_id:15728 Holdemania filiformis str. J1-31B-1 ATCC 51649
2.30.8.2.9.4007 OTU 1 seq
prokMSA_id:15729 tortuosum ATCC 25548
2.30.8.2.9.4011 OTU 1 seq
prokMSA_id:15730 Erysipelothrix rhusiopathiae str. alpha-P15 ATCC 19414
2.30.8.2.9.4013 OTU 1 seq
prokMSA_id:42372 cylindroides 
2.30.8.2.9.4029 OTU 1 seq
prokMSA_id:32694 CCAJG71 
2.30.8.2.9.4038 OTU 6 seqs
prokMSA_id:16818 Bulleidia moorei strain JCM 10645 
prokMSA_id:19191 Solobacterium moorei isolate:RCA59-77
prokMSA_id:21980 Solobacterium moorei isolate:RCA59-74
prokMSA_id:22422 Bulleidia moorei strain AHP 13983 
prokMSA_id:41366 Solobacterium moorei isolate:RCA59-75
prokMSA_id:41537 Solobacterium sp. oral clone K010 AY005052
2.30.8.2.9.4036 OTU 2 seqs
prokMSA_id:39574 clone p-1630-c5 
prokMSA_id:44294 clone p-326-a3 
2.30.8.2.9.4068 OTU 1 seq
prokMSA_id:42560 clone p-75-a5 
2.30.8.2.9.4072 OTU 1 seq
prokMSA_id:41982 CCAJG27 
2.30.8.2.9.4071 OTU 1 seq
prokMSA_id:52474 cf. Clostridium sp. MLG055 
2.30.8.2.9.4091 OTU 3 seqs
prokMSA_id:15722 sp. str. W 1365. Z36271
prokMSA_id:15723 sp. str. W 1365. U13036
prokMSA_id:31844 Bulleidia extructa 
2.30.8.2.9.4094 OTU 1 seq
prokMSA_id:15737 clone T21
2.30.8.2.9.4098 OTU 1 seq
prokMSA_id:15739 dolichum ATCC 29143
2.30.8.2.9.4099 OTU 1 seq
prokMSA_id:49837 cylindroides 
2.30.8.2.9.4103 OTU 1 seq
prokMSA_id:50433 clone p-392-o3 
2.30.8.2.9.4125 OTU 1 seq
prokMSA_id:43628 clone p-2731-24E5 
2.30.8.2.9.4143 OTU 1 seq
prokMSA_id:37902 Elbe River snow isolate Iso15_3 
2.30.8.2.9.747 OTU 2 seqs
prokMSA_id:15721 cylindroides ATCC 27803
prokMSA_id:72786 cylindroides 
2.30.8.2.9.768 OTU 2 seqs
prokMSA_id:15726 Erysipelothrix sp. str. Vadkasca
prokMSA_id:15727 Erysipelothrix tonsillarum CCUG 31352
2.30.8.3 SPIROPLASMA_GROUP 80 seqs
2.30.8.3.1 M.MYCOIDES_SUBGROUP 61 seqs
2.30.8.3.1.3953 OTU 54 seqs
prokMSA_id:15740 Mycoplasma capricolum ATCC 27343 =rrnB. X00921
prokMSA_id:15741 Mycoplasma mycoides subsp. capri str. PG3 =. U26036
prokMSA_id:15743 Mycoplasma mycoides subsp. mycoides str. UM30847 =rrnB
prokMSA_id:15744 Mycoplasma capricolum subsp. capricolum str. California kid 
prokMSA_id:15746 Mycoplasma capricolum subsp. capripneumoniae str. 4/2LC
prokMSA_id:15747 str. 7/1a. AF009838
prokMSA_id:15748 str. 8789
prokMSA_id:15749 str. 9081
prokMSA_id:15750 str. 91106/550/1
prokMSA_id:15751 str. 9231
prokMSA_id:15752 str. 95043
prokMSA_id:15753 str. GL102. AF009844
prokMSA_id:15754 str. M79/93
prokMSA_id:15755 Mycoplasma mycoides subsp. capri str. PG3 =rrnB
prokMSA_id:15757 Mycoplasma sp. str. PG50 =
prokMSA_id:15758 Mycoplasma capricolum subsp. capricolum str. California kid 
prokMSA_id:15759 str. 8756-13
prokMSA_id:15760 Mycoplasma mycoides subsp. mycoides str. PG1 =rrnB
prokMSA_id:15761 Mycoplasma sp. str. PG50 =
prokMSA_id:15762 Mycoplasma capricolum subsp. capricolum str. E570/iii =. U26
prokMSA_id:15763 Mycoplasma sp. str. F38 =rrnB operon
prokMSA_id:15764 Mycoplasma mycoides subsp. mycoides str. UM30847 ATCC 33557.
prokMSA_id:15765 Mycoplasma capricolum subsp. capricolum str. G5 =rrnB
prokMSA_id:15766 Mycoplasma capricolum subsp. capricolum str. G5 =
prokMSA_id:15767 Mycoplasma mycoides subsp. mycoides str. Y-goat =
prokMSA_id:15768 Mycoplasma capricolum subsp. capripneumoniae str. 4/2LC
prokMSA_id:15769 Mycoplasma sp. str. PG50 =rrnB
prokMSA_id:15770 Mycoplasma mycoides subsp. mycoides str. Y-goat =rrnB
prokMSA_id:15771 Mycoplasma mycoides subsp. mycoides str. PG1 =
prokMSA_id:15772 Mycoplasma mycoides subsp. mycoides str. UM30847 =
prokMSA_id:15773 Mycoplasma capricolum subsp. capripneumoniae str. F38 =. U26
prokMSA_id:15774 str. 7/1a. AF009830
prokMSA_id:15775 str. 8789. AF009831
prokMSA_id:15776 str. 9081. AF009832
prokMSA_id:15777 str. 91106/C550/1. AF009833
prokMSA_id:15778 str. 9231. AF009834
prokMSA_id:15779 str. 95043. AF009835
prokMSA_id:15780 str. GL102
prokMSA_id:15781 str. M79/93. AF009837
prokMSA_id:15782 Mycoplasma capricolum subsp. capricolum str. E570/iii =rrnB.
prokMSA_id:20656 Mycoplasma capricolum capripneumoniae operon AF202925
prokMSA_id:22976 Mycoplasma capricolum subsp. capripneumoniae operon B 
prokMSA_id:27213 Mycoplasma capricolum capripneumoniae operon AF202923
prokMSA_id:30974 Mycoplasma capricolum capripneumoniae operon 
prokMSA_id:31582 Mycoplasma capricolum capripneumoniae rrnB operon AF202928
prokMSA_id:34810 Mycoplasma capricolum capripneumoniae rrnB operon 
prokMSA_id:35482 Mycoplasma capricolum subsp. capripneumoniae operon A AF2329
prokMSA_id:47300 Mycoplasma capricolum capripneumoniae rrnB operon AF202924
prokMSA_id:70102 Mycoplasma sp. 'bovine group 7' isolate 47 AF261729
prokMSA_id:70694 Mycoplasma sp. 'bovine group 7' isolate 57 
prokMSA_id:71050 Mycoplasma sp. 'bovine group 7' isolate 4 AF261725
prokMSA_id:71421 Mycoplasma sp. 'bovine group 7' isolate 33 
prokMSA_id:71703 Mycoplasma sp. 'bovine group 7' isolate 36 
prokMSA_id:72686 Mycoplasma sp. 'bovine group 7' isolate 48 AF261730
2.30.8.3.1.3966 OTU 2 seqs
prokMSA_id:15788 Mesoplasma seiffertii. L12056
prokMSA_id:85011 Mesoplasma syrphidae 
2.30.8.3.1.4034 OTU 1 seq
prokMSA_id:15756 Entomoplasma freundtii
2.30.8.3.1.4047 OTU 2 seqs
prokMSA_id:70686 Entomoplasma lucivorax 
prokMSA_id:75155 Entomoplasma luminosum strain ATCC 49195 
2.30.8.3.1.4112 OTU 1 seq
prokMSA_id:77171 Entomoplasma somnilux 
2.30.8.3.1.4110 OTU 1 seq
prokMSA_id:71794 Mesoplasma lactucae ATCC 49193 
2.30.8.3.2 M.PUTREFACIENS_SUBGROUP 4 seqs
2.30.8.3.2.3942 OTU 1 seq
prokMSA_id:78432 Mesoplasma photuris 
2.30.8.3.2.4062 OTU 3 seqs
prokMSA_id:15784 Mycoplasma cottewii str. VIS ATCC 51347 . U67945
prokMSA_id:15785 Mycoplasma yeatsii str. GIH ATCC 51346
prokMSA_id:15786 Mycoplasma putrefaciens str. KS-1 = + rrnB
2.30.8.3.4 ENP.MELALEUCAE_SUBGROUP 8 seqs
2.30.8.3.4.3941 OTU 7 seqs
prokMSA_id:15791 Entomoplasma melaleucae str. M1 ATCC 49191 . M24478
prokMSA_id:15792 Mycoplasma monodon str. Australiain. AF042194
prokMSA_id:70272 Mesoplasma entomophilum 
prokMSA_id:71542 Mesoplasma florum 
prokMSA_id:76006 Mesoplasma chauliocola 
prokMSA_id:77531 Mesoplasma grammopterae 
prokMSA_id:79099 Mesoplasma tabanidae 
2.30.8.3.4.4012 OTU 1 seq
prokMSA_id:75831 Mesoplasma corruscae 
2.30.8.3.6 SPP.GLADIATORIS_SUBGROUP 1 seq
2.30.8.3.6.4120 OTU 1 seq
prokMSA_id:15797 Spiroplasma taiwanense str. CT-1 ATCC 43302
2.30.8.3.7 SPP.CITRI_SUBGROUP 1 seq
2.30.8.3.7.4088 OTU 1 seq
prokMSA_id:15800 Spiroplasma mirum str. SMCA ATCC 29335
2.30.8.3.8 SPP.IXODETIS_SUBGROUP 5 seqs
2.30.8.3.8.3960 OTU 5 seqs
prokMSA_id:15805 Spiroplasma sp
prokMSA_id:29463 Spiroplasma sp. SM 
prokMSA_id:41072 Spiroplasma sp. AJ006775
prokMSA_id:49332 Spiroplasma-symbiont of Antonina crawii 
prokMSA_id:53927 Spiroplasma sp. and 23S genes and 23S 
2.30.8.4 M.PNEUMONIAE_GROUP 72 seqs
2.30.8.4.1 UPL.UREALYTICUM_SUBGROUP 29 seqs
2.30.8.4.1.3995 OTU 1 seq
prokMSA_id:15830 Ureaplasma felinum str. FT2-B
2.30.8.4.1.3996 OTU 1 seq
prokMSA_id:15831 Ureaplasma gallorale ATCC 43346
2.30.8.4.1.4035 OTU 1 seq
prokMSA_id:15829 Ureaplasma cati str. F2
2.30.8.4.1.4032 OTU 1 seq
prokMSA_id:15828 Ureaplasma canigenitalium str. D6P-C
2.30.8.4.1.4031 OTU 1 seq
prokMSA_id:15827 Ureaplasma diversum str. A417
2.30.8.4.1.4093 OTU 24 seqs
prokMSA_id:15806 Ureaplasma urealyticum str. Pi serovar 6 ATCC 27818
prokMSA_id:15807 Ureaplasma urealyticum str. 7 serovar 1 ATCC 27813. U06094
prokMSA_id:15808 Ureaplasma urealyticum str. U26 serovar 14 ATCC 33697
prokMSA_id:15809 Ureaplasma urealyticum str. 7 serovar 1 ATCC 27813. AF073458
prokMSA_id:15810 Ureaplasma urealyticum str. U26 serovar 14 ATCC 33697
prokMSA_id:15811 Ureaplasma urealyticum str. 27
prokMSA_id:15812 Ureaplasma urealyticum ATCC 27815. AF073456
prokMSA_id:15813 Ureaplasma urealyticum str. Pi serovar 6 ATCC 27818. AF07345
prokMSA_id:15814 Ureaplasma urealyticum str. 960 ATCC 27618
prokMSA_id:15815 Ureaplasma urealyticum str. 23 serovar 2 ATCC 27814
prokMSA_id:15816 Ureaplasma urealyticum str. 354 serovar 5 ATCC 27817
prokMSA_id:15817 Ureaplasma urealyticum str. 23 serovar 2 ATCC 27814. AF07344
prokMSA_id:15818 Ureaplasma urealyticum ATCC 27816. AF073447
prokMSA_id:15819 Ureaplasma urealyticum str. 354 serovar 5 ATCC 27817
prokMSA_id:15820 Ureaplasma urealyticum ATCC 27819
prokMSA_id:15821 Ureaplasma urealyticum str. 960 ATCC 27618 . AF073450
prokMSA_id:15822 Ureaplasma urealyticum ATCC 33175. AF073451
prokMSA_id:15823 Ureaplasma urealyticum ATCC 33699. AF073452
prokMSA_id:15824 Ureaplasma urealyticum ATCC 33695. AF073453
prokMSA_id:15825 Ureaplasma urealyticum ATCC 33696. AF073454
prokMSA_id:15826 Ureaplasma urealyticum ATCC 33698. AF073455
prokMSA_id:40947 Ureaplasma urealyticum section 13 of 59 of the complete geno
prokMSA_id:48336 Ureaplasma urealyticum complete genome NC_002162
prokMSA_id:50881 Ureaplasma urealyticum section 28 of 59 of the complete geno
2.30.8.4.2 M.IOWAE_SUBGROUP 6 seqs
2.30.8.4.2.3998 OTU 1 seq
prokMSA_id:15833 Mycoplasma penetrans str. GTU-54-6A1
2.30.8.4.2.4058 OTU 2 seqs
prokMSA_id:15836 Mycoplasma iowae str. PPAV
prokMSA_id:15839 Mycoplasma iowae
2.30.8.4.2.4135 OTU 1 seq
prokMSA_id:15837 Mycoplasma fastidiosum str. 4822
2.30.8.4.2.4136 OTU 1 seq
prokMSA_id:15838 Mycoplasma sp
2.30.8.4.2.4144 OTU 1 seq
prokMSA_id:32823 clone:BCf1-07
2.30.8.4.3 M.GENITALIUM_SUBGROUP 7 seqs
2.30.8.4.3.4067 OTU 7 seqs
prokMSA_id:15840 Mycoplasma genitalium str. G37 J.G. Tully ATCC 33530
prokMSA_id:15841 Mycoplasma genitalium str. G37. X77334
prokMSA_id:15842 Mycoplasma genitalium str. G37 =
prokMSA_id:15844 Mycoplasma pneumoniae str. FH ATCC 15531
prokMSA_id:15845 Mycoplasma pneumoniae str. M129
prokMSA_id:15846 Mycoplasma pneumoniae str. FH ATCC 15531 . AF132740
prokMSA_id:15847 ATCC 29342. AF132741
2.30.8.4.4 M.GALLISEPTICUM_SUBGROUP 8 seqs
2.30.8.4.4.3940 OTU 5 seqs
prokMSA_id:15852 Mycoplasma imitans str. 4229
prokMSA_id:15853 Mycoplasma gallisepticum str. A5969. M22441
prokMSA_id:15854 Mycoplasma gallisepticum str. S6 =rrn16 operon. L08896
prokMSA_id:15855 Mycoplasma gallisepticum str. S6; A5969 = operon
prokMSA_id:89962 Mycoplasma gallisepticum strain R section 3 of 4 of the comp
2.30.8.4.4.4018 OTU 1 seq
prokMSA_id:15848 Mycoplasma alvi str. Isley
2.30.8.4.4.4022 OTU 1 seq
prokMSA_id:15850 Mycoplasma pirum str. HRC/70-159 ATCC 25960
2.30.8.4.4.4023 OTU 1 seq
prokMSA_id:15851 Mycoplasma testudinis str. 010 ATCC 43263
2.30.8.4.5 HBN.FELIS_SUBGROUP 22 seqs
2.30.8.4.5.3931 OTU 1 seq
prokMSA_id:49164 Mycoplasma ovis 
2.30.8.4.5.4020 OTU 13 seqs
prokMSA_id:15861 Haemobartonella felis
prokMSA_id:23047 Haemobartonella felis 
prokMSA_id:31040 Haemobartonella canis 
prokMSA_id:50405 Haemobartonella canis AF407208
prokMSA_id:56527 Mycoplasma haemofelis 
prokMSA_id:58418 Mycoplasma haemofelis isolate UK no. 6 
prokMSA_id:58421 Mycoplasma haemofelis isolate UK no. 5 AY150984
prokMSA_id:58425 Mycoplasma haemofelis isolate Australian no. 2 
prokMSA_id:58426 Mycoplasma felis isolate Australian no. 1 AY150976
prokMSA_id:58429 Mycoplasma haemofelis isolate French no. 1 
prokMSA_id:70879 Candidatus Mycoplasma haemominutum 
prokMSA_id:71517 Mycoplasma haemocanis isolate German no. 1 
prokMSA_id:74226 Haemobartonella felis 
2.30.8.4.5.4056 OTU 2 seqs
prokMSA_id:15857 Eperythrozoon suis str. Zachary
prokMSA_id:15859 Eperythrozoon suis str. Illinois
2.30.8.4.5.4114 OTU 6 seqs
prokMSA_id:15856 Haemobartonella felis str. California
prokMSA_id:50753 Haemobartonella felis AF271154
prokMSA_id:58423 Candidatus Mycoplasma haemominutum isolate UK no. 1 
prokMSA_id:58424 Candidatus Mycoplasma haemominutum isolate South African no.
prokMSA_id:70410 Candidatus Mycoplasma haemominutum isolate Australian no. 3 
prokMSA_id:73873 Candidatus Mycoplasma haemominutum isolate UK no. 2 
2.30.8.5 M.HOMINIS_GROUP 158 seqs
2.30.8.5.1 MYCOPLASMA.MOBILE 2 seqs
2.30.8.5.1.4089 OTU 1 seq
prokMSA_id:42338 Mycoplasma moatsii 
2.30.8.5.1.4116 OTU 1 seq
prokMSA_id:15863 Mycoplasma mobile str. 163K ATCC 43663
2.30.8.5.2 M.HYOPNEUMONIAE_SUBGROUP 16 seqs
2.30.8.5.2.3927 OTU 2 seqs
prokMSA_id:15880 Mycoplasma hyopneumoniae str. Weybridge ATCC 27719
prokMSA_id:21580 of Mycoplasma hyopneumoniae 
2.30.8.5.2.3929 OTU 1 seq
prokMSA_id:79153 Mycoplasma gypsbengalensis strain Gb-V33 
2.30.8.5.2.3947 OTU 1 seq
prokMSA_id:15865 Mycoplasma bovoculi str. M165/69
2.30.8.5.2.3971 OTU 3 seqs
prokMSA_id:28253 Mycoplasma collis 
prokMSA_id:32835 Mycoplasma cricetuli 
prokMSA_id:56134 Mycoplasma collis ; -23S intergenic spacer complete ; and 23
2.30.8.5.2.3979 OTU 1 seq
prokMSA_id:19656 Mycoplasma dispar 
2.30.8.5.2.3982 OTU 1 seq
prokMSA_id:33342 Mycoplasma molare 
2.30.8.5.2.4024 OTU 1 seq
prokMSA_id:15870 Mycoplasma ovipneumoniae str. Y-98
2.30.8.5.2.4027 OTU 1 seq
prokMSA_id:15872 Mycoplasma conjunctivae str. HRC/583
2.30.8.5.2.4111 OTU 2 seqs
prokMSA_id:15879 Mycoplasma sualvi str. Mayfield B ATCC 33004 . M23936
prokMSA_id:39647 Mycoplasma sualvi 
2.30.8.5.2.4117 OTU 3 seqs
prokMSA_id:15878 Mycoplasma hyorhinis ATCC VR-2580
prokMSA_id:31894 Mycoplasma hyorhinis 
prokMSA_id:42111 Mycoplasma hyorhinis strain BTS7 rrs 
2.30.8.5.3 M.HOMINIS_SUBGROUP 37 seqs
2.30.8.5.3.3946 OTU 1 seq
prokMSA_id:15897 Mycoplasma falconis str. H/T1
2.30.8.5.3.3949 OTU 1 seq
prokMSA_id:60547 Mycoplasma timone 
2.30.8.5.3.3957 OTU 2 seqs
prokMSA_id:15896 Mycoplasma spumans str. PG13
prokMSA_id:59733 Mycoplasma spumans ; -23S intergenic spacer complete ; and 2
2.30.8.5.3.3970 OTU 6 seqs
prokMSA_id:15884 Mycoplasma gateae ATCC 23392
prokMSA_id:15886 Mycoplasma canadense str. 275c
prokMSA_id:15889 Mycoplasma alkalescens str. PG51
prokMSA_id:15894 Mycoplasma arginini ATCC 25528
prokMSA_id:15895 Mycoplasma arginini str. G230
prokMSA_id:15902 Mycoplasma auris str. UIA ATCC 51348
2.30.8.5.3.3991 OTU 2 seqs
prokMSA_id:15900 Mycoplasma buccale str. CH20247
prokMSA_id:39619 Mycoplasma buccale U83502
2.30.8.5.3.3994 OTU 1 seq
prokMSA_id:15901 Mycoplasma faucium str. DC333
2.30.8.5.3.3997 OTU 1 seq
prokMSA_id:15905 Mycoplasma salivarium str. PG20
2.30.8.5.3.4019 OTU 1 seq
prokMSA_id:72462 Mycoplasma phocae 
2.30.8.5.3.4037 OTU 6 seqs
prokMSA_id:15892 Mycoplasma hominis str. 183
prokMSA_id:19704 Mycoplasma hominis rrnB operon strain SC4 AJ002267
prokMSA_id:23718 Mycoplasma hominis rrnB operon strain PG21 AJ002265
prokMSA_id:40026 Mycoplasma hominis rrnB operon strain P2 AJ002268
prokMSA_id:49564 Mycoplasma hominis rrnB operon strain 7488
prokMSA_id:74598 Mycoplasma hominis rrnB operon strain DC63
2.30.8.5.3.4049 OTU 6 seqs
prokMSA_id:15898 Mycoplasma hyosynoviae. U26730
prokMSA_id:18925 Mycoplasma hyosynoviae strain M309/84 
prokMSA_id:31624 Mycoplasma hyosynoviae strain EU4a 
prokMSA_id:37697 Mycoplasma hyosynoviae strain SF9317 AF465776
prokMSA_id:40373 Mycoplasma hyosynoviae strain L44 
prokMSA_id:49757 Mycoplasma hyosynoviae strain SAC63 
2.30.8.5.3.4061 OTU 2 seqs
prokMSA_id:15887 Mycoplasma anseris str. 1219
prokMSA_id:39995 Mycoplasma cloacale strain 383 
2.30.8.5.3.4069 OTU 1 seq
prokMSA_id:15891 Mycoplasma indiense str. 3T
2.30.8.5.3.4073 OTU 1 seq
prokMSA_id:36302 Mycoplasma elephantis isolate E42 
2.30.8.5.3.4097 OTU 1 seq
prokMSA_id:15888 Mycoplasma subdolum str. TB
2.30.8.5.3.4100 OTU 1 seq
prokMSA_id:72086 Mycoplasma equirhinis strain M432/72 
2.30.8.5.3.4104 OTU 1 seq
prokMSA_id:15899 Mycoplasma 'Grey Lung disease agent'
2.30.8.5.3.4102 OTU 1 seq
prokMSA_id:67615 Mycoplasma zalophus 
2.30.8.5.3.4128 OTU 1 seq
prokMSA_id:15903 Mycoplasma gypis str. B1/T1
2.30.8.5.3.4141 OTU 1 seq
prokMSA_id:71453 Mycoplasma phocicerebrale 
2.30.8.5.4 M.AGASSIZII_SUBGROUP 6 seqs
2.30.8.5.4.3999 OTU 2 seqs
prokMSA_id:15908 Mycoplasma sp. str. H3110
prokMSA_id:93639 Mycoplasma cheloniae strain BH29 AY366210
2.30.8.5.4.4014 OTU 3 seqs
prokMSA_id:15910 Mycoplasma pulmonis str. PG34
prokMSA_id:49947 Mycoplasma pulmonis complete genome NC_002771
prokMSA_id:58394 Mycoplasma pulmonis strain UAB CTIP complete genome; segment
2.30.8.5.4.4134 OTU 1 seq
prokMSA_id:15909 Mycoplasma pulmonis str. PG34 ATCC 19612
2.30.8.5.5 M.BOVIRHINIS_SUBGROUP 27 seqs
2.30.8.5.5.3928 OTU 1 seq
prokMSA_id:72467 Mycoplasma mustelae 
2.30.8.5.5.3930 OTU 1 seq
prokMSA_id:15922 Mycoplasma gallinaceum str. DD
2.30.8.5.5.3936 OTU 2 seqs
prokMSA_id:15928 Mycoplasma synoviae str. WVU 1853. L07757
prokMSA_id:15929 Mycoplasma synoviae str. WVU 1853
2.30.8.5.5.3935 OTU 1 seq
prokMSA_id:15925 Mycoplasma 94630 str. 94630
2.30.8.5.5.3951 OTU 1 seq
prokMSA_id:85218 Mycoplasma sp. VJC358 ; -23S intergenic spacer region comple
2.30.8.5.5.3967 OTU 1 seq
prokMSA_id:69777 Mycoplasma buteonis 
2.30.8.5.5.3968 OTU 2 seqs
prokMSA_id:15926 Mycoplasma lacerti str. A21JP2. U56733
prokMSA_id:49382 Mycoplasma alligatoris 
2.30.8.5.5.3974 OTU 1 seq
prokMSA_id:70402 Mycoplasma citelli 
2.30.8.5.5.3984 OTU 1 seq
prokMSA_id:28733 Mycoplasma verecundum 
2.30.8.5.5.4016 OTU 1 seq
prokMSA_id:15918 Mycoplasma corogypsi str. BV1 ATCC 51148
2.30.8.5.5.4015 OTU 1 seq
prokMSA_id:15916 Mycoplasma leonicaptivi ATCC 49890
2.30.8.5.5.4021 OTU 1 seq
prokMSA_id:15920 Mycoplasma sturni str. UCMF; p170/171 ATCC 51945
2.30.8.5.5.4042 OTU 2 seqs
prokMSA_id:15921 unnamed organism
prokMSA_id:24960 Mycoplasma columborale 
2.30.8.5.5.4057 OTU 2 seqs
prokMSA_id:15919 Mycoplasma gallopavonis
prokMSA_id:72545 Mycoplasma gallopavonis 
2.30.8.5.5.4081 OTU 3 seqs
prokMSA_id:15913 Mycoplasma edwardii str. PG24
prokMSA_id:70899 Mycoplasma canis AF412972
prokMSA_id:74000 Mycoplasma canis 
2.30.8.5.5.4087 OTU 1 seq
prokMSA_id:53013 Mycoplasma cynos 
2.30.8.5.5.4107 OTU 1 seq
prokMSA_id:71789 Mycoplasma anatis 
2.30.8.5.5.4123 OTU 2 seqs
prokMSA_id:15923 Mycoplasma crocodyli str. Mohan. U63137
prokMSA_id:32469 Mycoplasma crocodyli 
2.30.8.5.5.4122 OTU 1 seq
prokMSA_id:70918 Mycoplasma glycophilum 
2.30.8.5.5.4148 OTU 1 seq
prokMSA_id:15917 Mycoplasma felis ATCC 23391
2.30.8.5.6 M.HYOPHARYNGIS_SUBGROUP 1 seq
2.30.8.5.6.4113 OTU 1 seq
prokMSA_id:15931 Mycoplasma hyopharyngis str. H3-6B F
2.30.8.5.7 M.AGALACTIAE_SUBGROUP 39 seqs
2.30.8.5.7.4040 OTU 2 seqs
prokMSA_id:19193 Mycoplasma opalescens isolate MH5408 
prokMSA_id:71629 Mycoplasma opalescens complete ; and 23S 
2.30.8.5.7.4079 OTU 27 seqs
prokMSA_id:15933 Mycoplasma agalactiae str. PG2
prokMSA_id:15934 Mycoplasma agalactiae str. PG2 NCTC 10123 . M24290
prokMSA_id:15935 Mycoplasma bovis str. Donetta
prokMSA_id:15937 Mycoplasma bovis str. JTCL1
prokMSA_id:15940 Mycoplasma agalactiae str. Izat 17/95-96
prokMSA_id:15942 Mycoplasma bovis str. Donetta
prokMSA_id:17045 Mycoplasma bovis strain 120/81 
prokMSA_id:25799 Mycoplasma agalactiae strain 5632 AJ419903
prokMSA_id:31572 Mycoplasma agalactiae strain 4212 AJ419904
prokMSA_id:51117 Mycoplasma agalactiae strain 847.121 
prokMSA_id:70015 Mycoplasma agalactiae strain 35 
prokMSA_id:70591 Mycoplasma bovis strain M148/88 
prokMSA_id:70634 Mycoplasma agalactiae strain 4136/96 no 2 
prokMSA_id:70874 Mycoplasma agalactiae strain PG2
prokMSA_id:71393 Mycoplasma bovis strain PG45
prokMSA_id:71755 Mycoplasma agalactiae strain 5725 
prokMSA_id:71854 Mycoplasma agalactiae strain 25/95 
prokMSA_id:71989 Mycoplasma agalactiae strain 209
prokMSA_id:72350 Mycoplasma bovis strain 1067 
prokMSA_id:72539 Mycoplasma agalactiae strain 6968
prokMSA_id:72986 Mycoplasma bovis strain L22 
prokMSA_id:73088 Mycoplasma bovis strain MC3386 
prokMSA_id:73175 Mycoplasma bovis strain 422/88 
prokMSA_id:73703 Mycoplasma agalactiae strain 396/12 
prokMSA_id:73746 Mycoplasma agalactiae strain L9 
prokMSA_id:74108 Mycoplasma agalactiae strain 17 
prokMSA_id:74234 Mycoplasma agalactiae strain M133/87 
2.30.8.5.7.4080 OTU 2 seqs
prokMSA_id:15944 Mycoplasma leopharyngis ATCC 49889
prokMSA_id:47885 Mycoplasma maculosum isolate PG15 
2.30.8.5.7.4082 OTU 3 seqs
prokMSA_id:15938 Mycoplasma primatum str. 243. AF013997
prokMSA_id:15939 Mycoplasma primatum str. Navel. AF013998
prokMSA_id:48246 Mycoplasma primatum isolate HRC292 
2.30.8.5.7.4119 OTU 3 seqs
prokMSA_id:15936 Mycoplasma sp. str. Patient#88
prokMSA_id:15945 Mycoplasma spermatophilum str. NC011720. AF013996
prokMSA_id:19645 Mycoplasma spermatophilum isolate AH159 
2.30.8.5.7.4131 OTU 1 seq
prokMSA_id:15943 Mycoplasma felifaucium ATCC 43428
2.30.8.5.7.4130 OTU 1 seq
prokMSA_id:15941 Mycoplasma adleri str. G145 ATCC 27948
2.30.8.5.8 M.MELEAGRIDIS_SUBGROUP 30 seqs
2.30.8.5.8.3934 OTU 1 seq
prokMSA_id:15953 Mycoplasma simbae ATCC 49888
2.30.8.5.8.3972 OTU 1 seq
prokMSA_id:60702 Mycoplasma sp. HRC689 /23S intergenic spacer complete ; and 
2.30.8.5.8.3969 OTU 2 seqs
prokMSA_id:15948 Mycoplasma iners
prokMSA_id:50081 Mycoplasma iners isolate PG30 
2.30.8.5.8.3973 OTU 17 seqs
prokMSA_id:19819 Mycoplasma bovigenitalium strain 2001-035TU 
prokMSA_id:55778 Mycoplasma bovigenitalium isolate 988/80 
prokMSA_id:62437 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 48SR99 
prokMSA_id:62438 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 52SR99 
prokMSA_id:62440 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 52SR98 
prokMSA_id:62442 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 3SR99 
prokMSA_id:62446 Mycoplasma bovigenitalium isolate 434/81 
prokMSA_id:62449 Mycoplasma bovigenitalium strain PG 11 
prokMSA_id:70063 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 126SR99 
prokMSA_id:70186 Mycoplasma bovigenitalium isolate 57B00 
prokMSA_id:71448 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 12SR98 
prokMSA_id:71679 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 129SR99 
prokMSA_id:72631 Mycoplasma bovigenitalium isolate 398/87 
prokMSA_id:72958 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 122SR99 
prokMSA_id:73778 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 48SR98 
prokMSA_id:73988 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 95SR99 
prokMSA_id:74382 Mycoplasma sp. 'ovine/caprine serogroup 11' strain 2D 
2.30.8.5.8.3978 OTU 1 seq
prokMSA_id:70343 Mycoplasma columbinasale isolate 694 
2.30.8.5.8.4001 OTU 1 seq
prokMSA_id:73061 Mycoplasma caviae isolate G122 
2.30.8.5.8.4077 OTU 1 seq
prokMSA_id:23690 Mycoplasma equigenitalium isolate T37 
2.30.8.5.8.4090 OTU 1 seq
prokMSA_id:72219 Mycoplasma phocirhinis 
2.30.8.5.8.4095 OTU 1 seq
prokMSA_id:15954 Mycoplasma californicum str. ST-6 ATCC 33461
2.30.8.5.8.4121 OTU 1 seq
prokMSA_id:71570 Mycoplasma columbinum isolate MMP-1 
2.30.8.5.8.4133 OTU 1 seq
prokMSA_id:19295 Mycoplasma lipofaciens isolate R171 
2.30.8.5.8.4140 OTU 1 seq
prokMSA_id:15947 Mycoplasma meleagridis str. 17529
2.30.8.5.8.4142 OTU 1 seq
prokMSA_id:15949 Mycoplasma gallinarum str. PG16
2.30.9 CLOSTRIDIUM_AND_RELATIVES 726 seqs
2.30.9.1 C.LEPTUM_GROUP 451 seqs
2.30.9.1.1 C.THERMOCELLUM_SUBGROUP 114 seqs
2.30.9.1.1.4156 OTU 1 seq
prokMSA_id:68943 clone RA9C1 
2.30.9.1.1.4160 OTU 1 seq
prokMSA_id:32194 rumen 5C0d-4 
2.30.9.1.1.4159 OTU 1 seq
prokMSA_id:15993 clone RFN25
2.30.9.1.1.4166 OTU 1 seq
prokMSA_id:16796 clone p-3230-42A2 
2.30.9.1.1.4168 OTU 1 seq
prokMSA_id:62641 clone 29D19 
2.30.9.1.1.4171 OTU 1 seq
prokMSA_id:16002 clone JW32
2.30.9.1.1.4173 OTU 1 seq
prokMSA_id:78088 Clostridiaceae clone:Rs-D81
2.30.9.1.1.4183 OTU 1 seq
prokMSA_id:17822 clone p-1014-a5 
2.30.9.1.1.4187 OTU 1 seq
prokMSA_id:70302 Clostridiales oral clone P4PB_122 P3 
2.30.9.1.1.4188 OTU 1 seq
prokMSA_id:82466 clone ZZ12C1 
2.30.9.1.1.4192 OTU 1 seq
prokMSA_id:43660 low G+C Gram-positive MERTZ_2CM_209 
2.30.9.1.1.4201 OTU 1 seq
prokMSA_id:44398 clone RFLP 50E 
2.30.9.1.1.4214 OTU 1 seq
prokMSA_id:82486 rumen clone BS4 
2.30.9.1.1.4217 OTU 1 seq
prokMSA_id:35027 clone g3B5 
2.30.9.1.1.4218 OTU 1 seq
prokMSA_id:18115 from anoxic bulk soil clone BSV89
2.30.9.1.1.4222 OTU 1 seq
prokMSA_id:63236 clone FW105 
2.30.9.1.1.4227 OTU 1 seq
prokMSA_id:36705 clone p-52-a5 
2.30.9.1.1.4233 OTU 1 seq
prokMSA_id:48899 clone p-1062-a5 
2.30.9.1.1.4232 OTU 1 seq
prokMSA_id:41245 tbr4-15 
2.30.9.1.1.4243 OTU 1 seq
prokMSA_id:27881 clone RA13C3 
2.30.9.1.1.4241 OTU 1 seq
prokMSA_id:69942 clone p-4154-6Wa5 
2.30.9.1.1.4244 OTU 1 seq
prokMSA_id:77963 Clostridiaceae clone:Rs-K46
2.30.9.1.1.4254 OTU 1 seq
prokMSA_id:81069 Clostridiaceae clone: Rs-057
2.30.9.1.1.4256 OTU 1 seq
prokMSA_id:45715 rumen 4C28d-18 
2.30.9.1.1.4263 OTU 1 seq
prokMSA_id:29311 Clostridiaceae str. 80Wd 
2.30.9.1.1.4278 OTU 1 seq
prokMSA_id:77360 clone R1p16 
2.30.9.1.1.4282 OTU 1 seq
prokMSA_id:53929 clone p-3024-SwA5 
2.30.9.1.1.4285 OTU 1 seq
prokMSA_id:35135 clone g3Br5 
2.30.9.1.1.4286 OTU 1 seq
prokMSA_id:81242 Clostridiaceae clone: Rs-L37
2.30.9.1.1.4288 OTU 1 seq
prokMSA_id:82046 Clostridiaceae clone: Rs-L38
2.30.9.1.1.4297 OTU 1 seq
prokMSA_id:63296 clone RCP2-43 
2.30.9.1.1.4299 OTU 1 seq
prokMSA_id:81326 Clostridiaceae clone: Rs-L02
2.30.9.1.1.4300 OTU 1 seq
prokMSA_id:82058 Clostridiaceae clone: Rs-060
2.30.9.1.1.4301 OTU 2 seqs
prokMSA_id:28666 human oral A35 AF201985
prokMSA_id:72439 Firmicutes sp. oral clone F058 
2.30.9.1.1.4308 OTU 1 seq
prokMSA_id:71644 feedlot manure B78 
2.30.9.1.1.4310 OTU 1 seq
prokMSA_id:82036 Clostridiaceae clone: Rs-056
2.30.9.1.1.4311 OTU 2 seqs
prokMSA_id:15970 clone RC38
prokMSA_id:16005 clone RFN23
2.30.9.1.1.4342 OTU 2 seqs
prokMSA_id:30916 clone g3R1 
prokMSA_id:49948 clone g3W3 
2.30.9.1.1.4345 OTU 1 seq
prokMSA_id:15975 clone RFN72
2.30.9.1.1.4344 OTU 1 seq
prokMSA_id:15974 clone RFN28
2.30.9.1.1.4349 OTU 1 seq
prokMSA_id:15977 Clostridium josui str. III FERM P-9684
2.30.9.1.1.4356 OTU 1 seq
prokMSA_id:15982 clone RFN80
2.30.9.1.1.4355 OTU 1 seq
prokMSA_id:15981 clone JW26
2.30.9.1.1.4354 OTU 1 seq
prokMSA_id:16925 firmicute clone BIri47
2.30.9.1.1.4360 OTU 1 seq
prokMSA_id:15989 Clostridium thermocellum DSM 1237
2.30.9.1.1.4358 OTU 1 seq
prokMSA_id:15986 clone WsCH8
2.30.9.1.1.4364 OTU 1 seq
prokMSA_id:69664 Clostridiales oral clone MCE3_9 E1 
2.30.9.1.1.4370 OTU 1 seq
prokMSA_id:15991 clone JW21
2.30.9.1.1.4371 OTU 1 seq
prokMSA_id:15992 clone RFN16
2.30.9.1.1.4376 OTU 1 seq
prokMSA_id:15995 clone RFN8
2.30.9.1.1.4375 OTU 1 seq
prokMSA_id:15994 clone RFN70
2.30.9.1.1.4374 OTU 1 seq
prokMSA_id:74480 rumen 4C28d-12 
2.30.9.1.1.4377 OTU 1 seq
prokMSA_id:55772 low G+C Gram-positive clone ML635J-65 
2.30.9.1.1.4386 OTU 1 seq
prokMSA_id:19341 equine intestinal sp. ML23 clone ML23
2.30.9.1.1.4389 OTU 1 seq
prokMSA_id:16004 clone 12-124
2.30.9.1.1.4405 OTU 1 seq
prokMSA_id:31444 clone BA143 complete 
2.30.9.1.1.4406 OTU 1 seq
prokMSA_id:77727 Clostridiaceae clone:Rs-J39
2.30.9.1.1.4416 OTU 1 seq
prokMSA_id:32177 Saltmarsh clone LCP-84 
2.30.9.1.1.4420 OTU 1 seq
prokMSA_id:29174 clone g3P17 
2.30.9.1.1.4424 OTU 1 seq
prokMSA_id:77738 Clostridiaceae clone:Rs-M05
2.30.9.1.1.4428 OTU 1 seq
prokMSA_id:16692 rumen 3C0d-12 
2.30.9.1.1.4440 OTU 2 seqs
prokMSA_id:15971 clone RF6
prokMSA_id:15973 clone RF34. AF001765
2.30.9.1.1.4445 OTU 1 seq
prokMSA_id:42029 rumen 5C0d-12 
2.30.9.1.1.4442 OTU 1 seq
prokMSA_id:15972 clone RF10
2.30.9.1.1.4444 OTU 1 seq
prokMSA_id:15976 str. JTB32
2.30.9.1.1.4447 OTU 1 seq
prokMSA_id:47100 clone p-1565-b5 
2.30.9.1.1.4455 OTU 1 seq
prokMSA_id:53642 Clostridium thermosuccinogenes strain DSM 5807
2.30.9.1.1.4453 OTU 1 seq
prokMSA_id:71095 feedlot manure B4 
2.30.9.1.1.4463 OTU 1 seq
prokMSA_id:50120 from anoxic bulk soil clone BSV72
2.30.9.1.1.4477 OTU 1 seq
prokMSA_id:78383 Clostridiaceae clone:Rs-N85
2.30.9.1.1.4479 OTU 1 seq
prokMSA_id:44693 clone L10-14
2.30.9.1.1.4483 OTU 1 seq
prokMSA_id:22115 clone p-2406-55G5 
2.30.9.1.1.4487 OTU 1 seq
prokMSA_id:40486 equine intestinal sp. CL36 clone CL36
2.30.9.1.1.4486 OTU 1 seq
prokMSA_id:21032 clone g3H3 
2.30.9.1.1.4488 OTU 1 seq
prokMSA_id:48313 clone RA13C2 
2.30.9.1.1.4503 OTU 1 seq
prokMSA_id:78199 Clostridiaceae clone:Rs-H83
2.30.9.1.1.4501 OTU 1 seq
prokMSA_id:17517 sp. oral clone BU014 
2.30.9.1.1.4502 OTU 1 seq
prokMSA_id:59826 clone BB2_90 
2.30.9.1.1.4515 OTU 1 seq
prokMSA_id:52211 clone p-1772-c3 
2.30.9.1.1.4527 OTU 1 seq
prokMSA_id:17384 rumen 5C3d-17 
2.30.9.1.1.4531 OTU 1 seq
prokMSA_id:29902 rumen 4C0d-17 
2.30.9.1.1.4536 OTU 2 seqs
prokMSA_id:62670 low G+C Gram-positive clone ML635J-14 
prokMSA_id:62672 low G+C Gram-positive clone ML635J-38 
2.30.9.1.1.4534 OTU 2 seqs
prokMSA_id:15959 Clostridium FCB45 str. FCB45
prokMSA_id:15960 Clostridium FCG90-1 str. FCB90-1
2.30.9.1.1.4556 OTU 1 seq
prokMSA_id:24765 rumen 4C0d-14 
2.30.9.1.1.4573 OTU 2 seqs
prokMSA_id:15963 Clostridium termitidis DSM 5396
prokMSA_id:15980 Clostridium cellobioparum DSM 1351
2.30.9.1.1.4586 OTU 2 seqs
prokMSA_id:24626 clone GOUTA8 
prokMSA_id:50158 clone GOUTB10 
2.30.9.1.1.4584 OTU 3 seqs
prokMSA_id:15957 Clostridium papyrosolvens ATCC 35413
prokMSA_id:15961 Clostridium FCB90-2 str. FCB90-2
prokMSA_id:15962 Clostridium sp. str. RCel1
2.30.9.1.1.4588 OTU 2 seqs
prokMSA_id:15984 clone RC4
prokMSA_id:15990 clone RC31
2.30.9.1.1.4595 OTU 1 seq
prokMSA_id:35260 clone p-2531-18B5 
2.30.9.1.1.4605 OTU 3 seqs
prokMSA_id:22883 from anoxic bulk soil clone BSV30 AJ229192
prokMSA_id:35019 from anoxic bulk soil clone BSV29
prokMSA_id:50695 from anoxic bulk soil clone BSV31
2.30.9.1.1.4615 OTU 1 seq
prokMSA_id:15955 Bacteroides cellulosolvens ATCC 35603
2.30.9.1.1.4614 OTU 2 seqs
prokMSA_id:15983 Clostridium thermocellum
prokMSA_id:81208 Clostridium sp. JC3 
2.30.9.1.1.4617 OTU 1 seq
prokMSA_id:15956 clone WCHA1-45
2.30.9.1.1.4621 OTU 1 seq
prokMSA_id:26721 rumen 5C0d-14 
2.30.9.1.1.4622 OTU 1 seq
prokMSA_id:81946 Clostridiaceae clone: Rs-L36
2.30.9.1.1.4625 OTU 1 seq
prokMSA_id:42707 equine intestinal sp. PW15 clone PW15
2.30.9.1.1.4631 OTU 1 seq
prokMSA_id:42636 clone p-208-o5 
2.30.9.1.1.4636 OTU 1 seq
prokMSA_id:38025 clone g3S5 
2.30.9.1.1.4638 OTU 1 seq
prokMSA_id:18935 equine intestinal sp. DW12 clone DW12
2.30.9.1.1.4643 OTU 1 seq
prokMSA_id:15969 Clostridium aldrichii DSM 6159
2.30.9.1.2 C.THERMOLACTICUM_SUBGROUP 5 seqs
2.30.9.1.2.4182 OTU 1 seq
prokMSA_id:16010 clone JW19
2.30.9.1.2.4216 OTU 1 seq
prokMSA_id:19380 feedlot manure B82 
2.30.9.1.2.4291 OTU 1 seq
prokMSA_id:62669 low G+C Gram-positive clone ML635J-21 
2.30.9.1.2.4394 OTU 1 seq
prokMSA_id:16009 unnamed organism
2.30.9.1.2.4554 OTU 1 seq
prokMSA_id:81528 Clostridiaceae clone: Rs-068
2.30.9.1.3 C.LEPTUM_SUBGROUP 326 seqs
2.30.9.1.3.4152 OTU 3 seqs
prokMSA_id:33458 CCAJG144 AF429364
prokMSA_id:33914 clone p-4177-6Wa5 
prokMSA_id:34444 CCAJG52 AF429363
2.30.9.1.3.4149 OTU 1 seq
prokMSA_id:30476 adhufec108 
2.30.9.1.3.4150 OTU 1 seq
prokMSA_id:36503 clone p-4322-4Wa3 
2.30.9.1.3.4151 OTU 1 seq
prokMSA_id:29029 clone p-1293-a5 
2.30.9.1.3.4157 OTU 1 seq
prokMSA_id:77693 Clostridiaceae clone:Rs-A15
2.30.9.1.3.4155 OTU 1 seq
prokMSA_id:77833 Clostridiaceae clone:Rs-K92
2.30.9.1.3.4158 OTU 1 seq
prokMSA_id:19521 adhufec101 
2.30.9.1.3.4167 OTU 1 seq
prokMSA_id:77698 Clostridiaceae clone:Rs-D76
2.30.9.1.3.4165 OTU 1 seq
prokMSA_id:16040 Ruminococcus flavefaciens str. AR46
2.30.9.1.3.4164 OTU 1 seq
prokMSA_id:17850 ckncm322-B3-7 
2.30.9.1.3.4179 OTU 1 seq
prokMSA_id:16047 Clostridium sporosphaeroides ATCC 25781
2.30.9.1.3.4180 OTU 1 seq
prokMSA_id:77848 Clostridiaceae clone:Rs-M23
2.30.9.1.3.4184 OTU 1 seq
prokMSA_id:37423 clone:BCf4-08
2.30.9.1.3.4186 OTU 1 seq
prokMSA_id:23194 equine intestinal sp. PL29 clone PL29
2.30.9.1.3.4199 OTU 1 seq
prokMSA_id:36378 clone p-1528-b5 
2.30.9.1.3.4198 OTU 3 seqs
prokMSA_id:19089 adhufec269 AF132255
prokMSA_id:37799 clone p-2856-6C5 AF371798
prokMSA_id:55945 clone cadhufec17g05sav 
2.30.9.1.3.4202 OTU 1 seq
prokMSA_id:34823 clone p-5152-2Wb3 
2.30.9.1.3.4205 OTU 1 seq
prokMSA_id:30743 clone p-5291-2Wa3 
2.30.9.1.3.4209 OTU 2 seqs
prokMSA_id:25461 clone p-2622-9F5 AF371722
prokMSA_id:49605 clone p-3796-23G3 
2.30.9.1.3.4212 OTU 1 seq
prokMSA_id:81416 Clostridiaceae clone: Rs-061
2.30.9.1.3.4219 OTU 1 seq
prokMSA_id:27876 equine intestinal sp. DW07 clone DW07
2.30.9.1.3.4223 OTU 1 seq
prokMSA_id:73205 ckncm319-B7-19 
2.30.9.1.3.4225 OTU 1 seq
prokMSA_id:81980 Clostridiaceae clone: Rs-116
2.30.9.1.3.4224 OTU 1 seq
prokMSA_id:16045 clone RC23
2.30.9.1.3.4230 OTU 1 seq
prokMSA_id:37295 clone:BCf2-24
2.30.9.1.3.4235 OTU 1 seq
prokMSA_id:40616 clone p-84-a5 
2.30.9.1.3.4234 OTU 1 seq
prokMSA_id:16379 rumen 3C0d-11 
2.30.9.1.3.4239 OTU 1 seq
prokMSA_id:26978 clone p-1741-b3 
2.30.9.1.3.4238 OTU 1 seq
prokMSA_id:43051 clone p-810-a5 
2.30.9.1.3.4240 OTU 1 seq
prokMSA_id:43052 clone p-878-a5 
2.30.9.1.3.4242 OTU 1 seq
prokMSA_id:81523 Clostridiaceae clone: Rs-072
2.30.9.1.3.4245 OTU 1 seq
prokMSA_id:73946 clone p-2448-18B5 
2.30.9.1.3.4246 OTU 1 seq
prokMSA_id:32491 Clostridium leptum strain DSM 753T
2.30.9.1.3.4247 OTU 1 seq
prokMSA_id:31763 clone p-193-o5 
2.30.9.1.3.4252 OTU 1 seq
prokMSA_id:38129 clone p-5460-2Wb5 
2.30.9.1.3.4255 OTU 1 seq
prokMSA_id:29495 clone p-2609-9F5 
2.30.9.1.3.4253 OTU 1 seq
prokMSA_id:51886 clone RFLP 17E 
2.30.9.1.3.4251 OTU 1 seq
prokMSA_id:19611 clone p-1674-b3 
2.30.9.1.3.4260 OTU 1 seq
prokMSA_id:28809 clone p-5228-4Wb5 
2.30.9.1.3.4265 OTU 1 seq
prokMSA_id:78138 Clostridiaceae clone:Rs-N70
2.30.9.1.3.4262 OTU 1 seq
prokMSA_id:16067 Ruminococcus flavefaciens str. NJ
2.30.9.1.3.4261 OTU 1 seq
prokMSA_id:77977 Clostridiaceae clone:Rs-G04
2.30.9.1.3.4267 OTU 1 seq
prokMSA_id:82016 Clostridiaceae clone: Rs-114
2.30.9.1.3.4269 OTU 1 seq
prokMSA_id:82017 Clostridiaceae clone: Rs-L18
2.30.9.1.3.4270 OTU 1 seq
prokMSA_id:48084 clone p-1791-c3 
2.30.9.1.3.4266 OTU 1 seq
prokMSA_id:78067 Clostridiaceae clone:Rs-M86
2.30.9.1.3.4273 OTU 1 seq
prokMSA_id:78154 Clostridiaceae clone:Rs-M14
2.30.9.1.3.4271 OTU 1 seq
prokMSA_id:73132 clone IIIA-3
2.30.9.1.3.4272 OTU 1 seq
prokMSA_id:78224 Clostridiaceae clone:Rs-M34
2.30.9.1.3.4279 OTU 1 seq
prokMSA_id:20289 from anoxic bulk soil clone BSV28
2.30.9.1.3.4276 OTU 2 seqs
prokMSA_id:20993 rumen 4C0d-13 
prokMSA_id:48444 rumen 3C3d-3 
2.30.9.1.3.4277 OTU 1 seq
prokMSA_id:71706 Elbe River snow isolate Iso15_5 
2.30.9.1.3.4284 OTU 1 seq
prokMSA_id:45766 rumen 4C0d-7 
2.30.9.1.3.4283 OTU 1 seq
prokMSA_id:78167 Clostridiaceae clone:Rs-G87
2.30.9.1.3.4281 OTU 1 seq
prokMSA_id:36596 clone UASB_brew_B86 
2.30.9.1.3.4289 OTU 1 seq
prokMSA_id:81319 Clostridiaceae clone: Rs-039
2.30.9.1.3.4292 OTU 1 seq
prokMSA_id:22107 adhufec53.25 
2.30.9.1.3.4293 OTU 1 seq
prokMSA_id:78317 Clostridiaceae clone:Rs-Q01
2.30.9.1.3.4294 OTU 1 seq
prokMSA_id:16629 ckncm172-F3M.1E2 
2.30.9.1.3.4290 OTU 1 seq
prokMSA_id:51306 clone p-2576-9F5 
2.30.9.1.3.4298 OTU 1 seq
prokMSA_id:83830 Clostridiales oral clone P4PA_66 P1 
2.30.9.1.3.4303 OTU 3 seqs
prokMSA_id:16016 plautii DSM 4000
prokMSA_id:32020 Clostridium orbiscindens strain DSM 674
prokMSA_id:88785 inhufecA-19 AY328360
2.30.9.1.3.4307 OTU 1 seq
prokMSA_id:53789 ckncm197-F4M.1B5 
2.30.9.1.3.4313 OTU 2 seqs
prokMSA_id:16053 Ruminococcus callidus ATCC 27760
prokMSA_id:16054 Ruminococcus callidus
2.30.9.1.3.4316 OTU 2 seqs
prokMSA_id:21306 clone p-241-o5 
prokMSA_id:31392 clone p-422-o3 
2.30.9.1.3.4315 OTU 1 seq
prokMSA_id:78171 Clostridiaceae clone:Rs-N94
2.30.9.1.3.4317 OTU 1 seq
prokMSA_id:78174 Clostridiaceae clone:Rs-G06
2.30.9.1.3.4321 OTU 1 seq
prokMSA_id:78187 Clostridiaceae clone:Rs-C76
2.30.9.1.3.4326 OTU 1 seq
prokMSA_id:19113 Oscillospira guillermondii clone:OSC3
2.30.9.1.3.4327 OTU 3 seqs
prokMSA_id:21464 Oscillospira guillermondii clone:OSC5
prokMSA_id:31587 Oscillospira guillermondii clone:OSC1
prokMSA_id:49276 Oscillospira guillermondii clone:OSC4
2.30.9.1.3.4324 OTU 2 seqs
prokMSA_id:16021 clone RFN71
prokMSA_id:45828 rumen 3C3d-13 
2.30.9.1.3.4329 OTU 5 seqs
prokMSA_id:29057 rumen 6C3d-10 
prokMSA_id:31936 rumen 6C3d-12 AB034070
prokMSA_id:39644 rumen 6C3d-27 
prokMSA_id:44628 rumen 4C28d-19 
prokMSA_id:54623 rumen 6C3d-33 AB034073
2.30.9.1.3.4333 OTU 1 seq
prokMSA_id:36271 Clostridium methylpentosum strain DSM 5476
2.30.9.1.3.4331 OTU 1 seq
prokMSA_id:32842 clone UASB_brew_B84 
2.30.9.1.3.4330 OTU 1 seq
prokMSA_id:84779 rumen clone BE33 
2.30.9.1.3.4334 OTU 1 seq
prokMSA_id:77718 Clostridiaceae clone:Rs-N03
2.30.9.1.3.4335 OTU 1 seq
prokMSA_id:78375 Clostridiaceae clone:Rs-N86
2.30.9.1.3.4346 OTU 1 seq
prokMSA_id:73606 ckncm326-B4-13 
2.30.9.1.3.4347 OTU 1 seq
prokMSA_id:20780 equine intestinal sp. CL19 clone CL19
2.30.9.1.3.4350 OTU 1 seq
prokMSA_id:51616 equine intestinal sp. DL06 clone DL06
2.30.9.1.3.4357 OTU 1 seq
prokMSA_id:85903 Lachnospiraceae 19gly4 
2.30.9.1.3.4359 OTU 1 seq
prokMSA_id:77816 Clostridiaceae clone:Rs-C69
2.30.9.1.3.4362 OTU 1 seq
prokMSA_id:45135 ZF3 
2.30.9.1.3.4361 OTU 1 seq
prokMSA_id:81566 clone KD1-35 
2.30.9.1.3.4367 OTU 1 seq
prokMSA_id:27355 clone p-1061-a5 
2.30.9.1.3.4366 OTU 1 seq
prokMSA_id:66186 clone IB-18
2.30.9.1.3.4363 OTU 1 seq
prokMSA_id:45063 feedlot manure B54 
2.30.9.1.3.4369 OTU 1 seq
prokMSA_id:77864 Clostridiaceae clone:Rs-N73
2.30.9.1.3.4368 OTU 1 seq
prokMSA_id:23070 equine intestinal sp. ML34 clone ML34
2.30.9.1.3.4373 OTU 1 seq
prokMSA_id:25957 clone p-2479-18B5 
2.30.9.1.3.4380 OTU 1 seq
prokMSA_id:16059 Clostridium cellulosi str.
2.30.9.1.3.4381 OTU 1 seq
prokMSA_id:73826 ckncm301-B3-28 
2.30.9.1.3.4379 OTU 1 seq
prokMSA_id:70077 adhufec81 
2.30.9.1.3.4383 OTU 1 seq
prokMSA_id:48828 equine intestinal sp. DL19 clone DL19
2.30.9.1.3.4387 OTU 1 seq
prokMSA_id:33112 clone p-1719-b3 
2.30.9.1.3.4385 OTU 1 seq
prokMSA_id:45345 equine intestinal sp. DW18 clone DW18
2.30.9.1.3.4384 OTU 1 seq
prokMSA_id:26704 clone p-2573-9F5 
2.30.9.1.3.4390 OTU 1 seq
prokMSA_id:22352 clone F13
2.30.9.1.3.4395 OTU 1 seq
prokMSA_id:70024 CCAJG39 
2.30.9.1.3.4400 OTU 1 seq
prokMSA_id:16061 clone RC6
2.30.9.1.3.4397 OTU 1 seq
prokMSA_id:16060 clone RC5
2.30.9.1.3.4402 OTU 1 seq
prokMSA_id:77723 Clostridiaceae clone:Rs-P74
2.30.9.1.3.4404 OTU 1 seq
prokMSA_id:16062 clone WCHB1-49
2.30.9.1.3.4409 OTU 1 seq
prokMSA_id:16063 clone RFN17
2.30.9.1.3.4407 OTU 1 seq
prokMSA_id:33668 clone p-417-o3 
2.30.9.1.3.4411 OTU 1 seq
prokMSA_id:16017 clone RC15
2.30.9.1.3.4408 OTU 1 seq
prokMSA_id:35394 equine intestinal sp. CL26 clone CL26
2.30.9.1.3.4412 OTU 1 seq
prokMSA_id:16019 clone RF26
2.30.9.1.3.4413 OTU 1 seq
prokMSA_id:22509 equine intestinal sp. DL16 clone DL16
2.30.9.1.3.4415 OTU 1 seq
prokMSA_id:78388 Clostridiaceae clone:Rs-K32
2.30.9.1.3.4421 OTU 1 seq
prokMSA_id:31495 equine intestinal YT1 
2.30.9.1.3.4417 OTU 1 seq
prokMSA_id:29313 equine intestinal sp. DL27 clone DL27
2.30.9.1.3.4418 OTU 1 seq
prokMSA_id:77804 Clostridiaceae clone:Rs-H18
2.30.9.1.3.4425 OTU 1 seq
prokMSA_id:72147 ckncm316-B4-5 
2.30.9.1.3.4430 OTU 1 seq
prokMSA_id:40419 equine intestinal clone:YT23
2.30.9.1.3.4434 OTU 1 seq
prokMSA_id:77987 Clostridiaceae clone:Rs-K11
2.30.9.1.3.4435 OTU 1 seq
prokMSA_id:35786 clone p-2498-18B5 
2.30.9.1.3.4437 OTU 1 seq
prokMSA_id:16072 Clostridium viride str. T2-7 DSM 6836
2.30.9.1.3.4441 OTU 1 seq
prokMSA_id:16073 clone WCHB1-54
2.30.9.1.3.4443 OTU 1 seq
prokMSA_id:23994 clone p-3567-9F3 
2.30.9.1.3.4449 OTU 1 seq
prokMSA_id:72970 adhufec58 
2.30.9.1.3.4450 OTU 1 seq
prokMSA_id:44184 clone p-3778-23G3 
2.30.9.1.3.4452 OTU 1 seq
prokMSA_id:20899 equine intestinal sp. ML26 clone ML26
2.30.9.1.3.4456 OTU 1 seq
prokMSA_id:43950 clone p-1316-a5 
2.30.9.1.3.4459 OTU 1 seq
prokMSA_id:81634 Clostridiaceae clone: Rs-109
2.30.9.1.3.4457 OTU 1 seq
prokMSA_id:31601 Linmingia china 
2.30.9.1.3.4461 OTU 1 seq
prokMSA_id:66188 clone IA-24
2.30.9.1.3.4465 OTU 2 seqs
prokMSA_id:33321 rumen 5C0d-6 
prokMSA_id:33958 rumen 5C0d-7 AB034040
2.30.9.1.3.4469 OTU 1 seq
prokMSA_id:25054 clone p-1082-a5 
2.30.9.1.3.4468 OTU 1 seq
prokMSA_id:19757 equine intestinal sp. DW04 clone DW04
2.30.9.1.3.4474 OTU 1 seq
prokMSA_id:36670 CCAJG148 
2.30.9.1.3.4473 OTU 1 seq
prokMSA_id:21784 rumen 3C0d-5 
2.30.9.1.3.4471 OTU 1 seq
prokMSA_id:81882 Clostridiaceae clone: Rs-058
2.30.9.1.3.4475 OTU 1 seq
prokMSA_id:78184 Clostridiaceae clone:Rs-N02
2.30.9.1.3.4478 OTU 1 seq
prokMSA_id:34412 clone p-956-s962-5 
2.30.9.1.3.4476 OTU 1 seq
prokMSA_id:21232 clone p-2484-18B5 
2.30.9.1.3.4484 OTU 1 seq
prokMSA_id:31732 equine intestinal sp. DL34 clone DL34
2.30.9.1.3.4481 OTU 1 seq
prokMSA_id:16559 clone p-1617-c5 
2.30.9.1.3.4482 OTU 1 seq
prokMSA_id:45569 rumen 3C0d-14 
2.30.9.1.3.4489 OTU 1 seq
prokMSA_id:30067 clone p-2506-18B5 
2.30.9.1.3.4485 OTU 1 seq
prokMSA_id:41287 clone p-1651-c5 
2.30.9.1.3.4494 OTU 1 seq
prokMSA_id:52759 clone p-4067-6Wa3 
2.30.9.1.3.4490 OTU 1 seq
prokMSA_id:20372 equine intestinal clone:YT25
2.30.9.1.3.4491 OTU 1 seq
prokMSA_id:46657 ckncm325-B3-50 
2.30.9.1.3.4493 OTU 1 seq
prokMSA_id:52755 clone HuCB2
2.30.9.1.3.4496 OTU 1 seq
prokMSA_id:42993 CCAJG166 
2.30.9.1.3.4497 OTU 1 seq
prokMSA_id:77671 Clostridiaceae clone:Rs-N16
2.30.9.1.3.4499 OTU 1 seq
prokMSA_id:35154 clone p-3051-SwA5 
2.30.9.1.3.4495 OTU 1 seq
prokMSA_id:50218 clone p-206-o5 
2.30.9.1.3.4500 OTU 4 seqs
prokMSA_id:16076 Ruminococcus bromii
prokMSA_id:23588 clone p-2452-18B5 
prokMSA_id:42426 adhufec21 AF132247
prokMSA_id:61082 clone cadhufec014h7 AF530317
2.30.9.1.3.4504 OTU 1 seq
prokMSA_id:42379 rumen 5C0d-16 
2.30.9.1.3.4509 OTU 1 seq
prokMSA_id:16649 clone p-812-a5 
2.30.9.1.3.4507 OTU 2 seqs
prokMSA_id:77761 Clostridiaceae clone:Rs-N21
prokMSA_id:81387 Clostridiaceae clone: Rs-121 AB100491
2.30.9.1.3.4505 OTU 1 seq
prokMSA_id:33345 rumen 4C0d-6 
2.30.9.1.3.4513 OTU 1 seq
prokMSA_id:25396 clone UASB_brew_B23 
2.30.9.1.3.4511 OTU 1 seq
prokMSA_id:73575 ckncm314-B7-17 
2.30.9.1.3.4512 OTU 1 seq
prokMSA_id:28258 clone UASB_brew_B25 
2.30.9.1.3.4510 OTU 1 seq
prokMSA_id:77781 Clostridiaceae clone:Rs-Q53
2.30.9.1.3.4514 OTU 1 seq
prokMSA_id:77791 Clostridiaceae clone:Rs-B34
2.30.9.1.3.4522 OTU 1 seq
prokMSA_id:74798 adhufec311 
2.30.9.1.3.4524 OTU 1 seq
prokMSA_id:81110 Clostridiaceae clone: Rs-093
2.30.9.1.3.4528 OTU 1 seq
prokMSA_id:16729 clone p-2428-55G5 
2.30.9.1.3.4533 OTU 1 seq
prokMSA_id:77897 Clostridiaceae clone:Rs-N06
2.30.9.1.3.4538 OTU 6 seqs
prokMSA_id:26836 clone p-2423-55G5 
prokMSA_id:28428 clone p-2557-9F5 
prokMSA_id:31395 Butyrate-producing L2-6 
prokMSA_id:35563 clone HuCA11
prokMSA_id:40793 clone HuCB29
prokMSA_id:72568 adhufec113 
2.30.9.1.3.4537 OTU 2 seqs
prokMSA_id:26264 clone p-1637-c5 
prokMSA_id:31384 clone p-839-a5 
2.30.9.1.3.4535 OTU 8 seqs
prokMSA_id:24554 ckncm300-B2-4 
prokMSA_id:26738 ckncm297-B1-1 
prokMSA_id:36483 ckncm309-B3-39 
prokMSA_id:69800 ckncm310-B6-79 
prokMSA_id:71012 ckncm308-B6-4 
prokMSA_id:73168 ckncm307-B-6-40 
prokMSA_id:73368 ckncm298-B3-17 
prokMSA_id:73521 ckncm302-B3-11 
2.30.9.1.3.4539 OTU 1 seq
prokMSA_id:78294 Clostridiaceae clone:Rs-C61
2.30.9.1.3.4540 OTU 1 seq
prokMSA_id:78368 Clostridiaceae clone:Rs-M18
2.30.9.1.3.4541 OTU 2 seqs
prokMSA_id:32948 adhufec296 
prokMSA_id:71027 clone p-900-a5 
2.30.9.1.3.4542 OTU 1 seq
prokMSA_id:31973 clone HuCB24
2.30.9.1.3.4548 OTU 1 seq
prokMSA_id:78376 Clostridiaceae clone:Rs-Q69
2.30.9.1.3.4545 OTU 1 seq
prokMSA_id:40798 clone p-2560-9F5 
2.30.9.1.3.4544 OTU 1 seq
prokMSA_id:85658 rumen clone BF39 
2.30.9.1.3.4550 OTU 1 seq
prokMSA_id:45365 clone p-320-a3 
2.30.9.1.3.4557 OTU 2 seqs
prokMSA_id:16037 clone RCP6
prokMSA_id:26324 rumen 4C0d-11 
2.30.9.1.3.4558 OTU 3 seqs
prokMSA_id:16018 clone RF7
prokMSA_id:16029 clone RFN7
prokMSA_id:17907 rumen 5C0d-9 AB034042
2.30.9.1.3.4559 OTU 1 seq
prokMSA_id:85153 rumen clone BF30 
2.30.9.1.3.4564 OTU 2 seqs
prokMSA_id:29607 CCAJG31 
prokMSA_id:70286 CCAJG1 
2.30.9.1.3.4567 OTU 7 seqs
prokMSA_id:18308 clone p-2617-9F5 
prokMSA_id:19049 ckncm312-B6-5 
prokMSA_id:21362 clone HuCB5
prokMSA_id:46691 clone p-2814-24E5 
prokMSA_id:49003 clone p-2571-9F5 
prokMSA_id:51893 CB25 
prokMSA_id:52894 clone p-3198-SwA-3 
2.30.9.1.3.4566 OTU 1 seq
prokMSA_id:29413 clone p-2657-65A5 
2.30.9.1.3.4563 OTU 6 seqs
prokMSA_id:17499 clone p-2203-s959-3 
prokMSA_id:18520 clone p-1720-b3 
prokMSA_id:37047 clone p-1706-b3 
prokMSA_id:37658 clone p-1721-b3 
prokMSA_id:39948 clone p-366-a3 
prokMSA_id:45687 clone p-2840-6C5 
2.30.9.1.3.4570 OTU 6 seqs
prokMSA_id:16652 clone HuCB7
prokMSA_id:27791 clone p-2053-s959-5 
prokMSA_id:61046 clone cadhufec18c11sav AF530352
prokMSA_id:61076 clone cadhufec121h7 AF530315
prokMSA_id:61094 clone cadhufec007h7 AF530295
prokMSA_id:92937 clone REC6M_71 AY343231
2.30.9.1.3.4568 OTU 2 seqs
prokMSA_id:16078 clone RFN10
prokMSA_id:16079 clone RFN63
2.30.9.1.3.4571 OTU 14 seqs
prokMSA_id:16080 Fusobacterium prausnitzii ATCC 27766
prokMSA_id:18361 Butyrate-producing A2-165 
prokMSA_id:22018 clone HuCA10
prokMSA_id:27857 adhufec218 AF132246
prokMSA_id:27866 Fusobacterium prausnitzii strain ATCC 27768
prokMSA_id:34145 ckncm315-B3-32 
prokMSA_id:51328 clone p-5459-2Wb5 AF371947
prokMSA_id:53461 clone p-1749-b3 
prokMSA_id:71071 ckncm299-B6-29 
prokMSA_id:72195 ckncm303-B3-1 
prokMSA_id:72853 ckncm311-B3-45 
prokMSA_id:72938 ckncm306-B3-19 
prokMSA_id:73770 ckncm304-B3-9 
prokMSA_id:74119 clone HuCA25
2.30.9.1.3.4572 OTU 2 seqs
prokMSA_id:77443 A2 
prokMSA_id:77507 A29-1 
2.30.9.1.3.4582 OTU 6 seqs
prokMSA_id:23250 clone p-2628-9F5 
prokMSA_id:27984 clone p-882-a5 
prokMSA_id:34464 clone p-2215-s959-3 
prokMSA_id:44399 clone p-2600-9F5 
prokMSA_id:45610 clone p-2179-s959-3 
prokMSA_id:68839 clone p-1497-b5 AF371789
2.30.9.1.3.4581 OTU 2 seqs
prokMSA_id:46910 clone p-2239-s959-3 
prokMSA_id:49817 clone p-594-a5 
2.30.9.1.3.4585 OTU 11 seqs
prokMSA_id:16025 Ruminococcus flavefaciens str. C94 ATCC 19208
prokMSA_id:16035 Ruminococcus flavefaciens str. C94 ATCC 19208
prokMSA_id:16038 clone RFN88
prokMSA_id:16039 Ruminococcus flavefaciens str. FD-1
prokMSA_id:16064 Ruminococcus flavefaciens str. C94 NCFB 2213
prokMSA_id:16065 Ruminococcus flavefaciens str. Y1
prokMSA_id:16066 Ruminococcus flavefaciens str. AR72
prokMSA_id:16068 Ruminococcus flavefaciens str. 007; LRC017
prokMSA_id:16069 Ruminococcus flavefaciens str. 4; LRC083
prokMSA_id:16070 Ruminococcus flavefaciens str. 17
prokMSA_id:31080 Ruminococcus flavefaciens strain LP9155 AF104836
2.30.9.1.3.4583 OTU 2 seqs
prokMSA_id:16058 Anaerofilum agile str. F DSM 4272
prokMSA_id:16081 Anaerofilum pentosovorans str. Fae DSM 7168
2.30.9.1.3.4591 OTU 2 seqs
prokMSA_id:39555 rumen 4C28d-4 AB034125
prokMSA_id:46835 clone p-953-s962-5 
2.30.9.1.3.4592 OTU 2 seqs
prokMSA_id:16041 Ruminococcus flavefaciens str. LP-R1-Adx
prokMSA_id:16042 Ruminococcus flavefaciens str. LP-C14-Adx
2.30.9.1.3.4594 OTU 1 seq
prokMSA_id:44151 clone p-1487-b5 
2.30.9.1.3.4593 OTU 1 seq
prokMSA_id:50712 clone p-5014-2Wa5 
2.30.9.1.3.4596 OTU 1 seq
prokMSA_id:45893 clone p-4157-6Wa5 
2.30.9.1.3.4601 OTU 5 seqs
prokMSA_id:16048 Ruminococcus albus str. 7 ATCC 27210
prokMSA_id:16049 Ruminococcus albus str. AR67
prokMSA_id:16052 Ruminococcus albus str. OR108
prokMSA_id:16074 Ruminococcus albus
prokMSA_id:16075 Ruminococcus albus str. F-40
2.30.9.1.3.4602 OTU 1 seq
prokMSA_id:42480 rumen 3C0d-15 
2.30.9.1.3.4604 OTU 1 seq
prokMSA_id:19080 clone p-1510-b5 
2.30.9.1.3.4603 OTU 8 seqs
prokMSA_id:46933 clone p-2559-9F5 
prokMSA_id:81198 Faecalibacterium prausnitzii clone 1-88 
prokMSA_id:81552 Faecalibacterium prausnitzii clone 1-84 
prokMSA_id:82053 Faecalibacterium prausnitzii clone 1-79 
prokMSA_id:92157 clone REC1M_12 AY343144
prokMSA_id:92569 clone REC1M_20 AY343151
prokMSA_id:92881 clone REC1M_33 AY343145
prokMSA_id:93090 clone REC6M_63 AY343221
2.30.9.1.3.4611 OTU 2 seqs
prokMSA_id:22844 clone p-641-a5 
prokMSA_id:47737 clone p-886-a5 
2.30.9.1.3.4613 OTU 4 seqs
prokMSA_id:40552 rumen 3C0d-3 AB034003
prokMSA_id:77617 Clostridiaceae clone:Rs-P37
prokMSA_id:78083 Clostridiaceae clone:Rs-M87
prokMSA_id:82143 Clostridiaceae clone: Rs-L03
2.30.9.1.3.4619 OTU 1 seq
prokMSA_id:20765 clone p-3275-A42 
2.30.9.1.3.4618 OTU 2 seqs
prokMSA_id:16043 Ruminococcus flavefaciens str. C52 ATCC 49949
prokMSA_id:44827 clone p-421-o3 
2.30.9.1.3.4620 OTU 1 seq
prokMSA_id:51722 clone p-1877-s962-3 
2.30.9.1.3.4623 OTU 1 seq
prokMSA_id:72987 clone HuCA1
2.30.9.1.3.4624 OTU 1 seq
prokMSA_id:21299 equine intestinal sp. MW07 clone MW07
2.30.9.1.3.4626 OTU 1 seq
prokMSA_id:16023 str. ASF 500
2.30.9.1.3.4627 OTU 1 seq
prokMSA_id:78007 Clostridiaceae clone:Rs-A13
2.30.9.1.3.4630 OTU 1 seq
prokMSA_id:17630 equine intestinal sp. ML03 clone ML03
2.30.9.1.3.4628 OTU 1 seq
prokMSA_id:30534 Hydrogen production community clone HPB-G1-15 
2.30.9.1.3.4632 OTU 1 seq
prokMSA_id:33877 CCAJG114 
2.30.9.1.3.4633 OTU 1 seq
prokMSA_id:24921 ckncm324-B6-45 
2.30.9.1.3.4634 OTU 1 seq
prokMSA_id:16027 clone RF29
2.30.9.1.3.4639 OTU 1 seq
prokMSA_id:16030 clone vadinHA42
2.30.9.1.3.4641 OTU 1 seq
prokMSA_id:39700 Papillibacter cinnaminovorans 
2.30.9.1.3.4637 OTU 1 seq
prokMSA_id:81967 Clostridiaceae clone: Rs-088
2.30.9.1.3.4640 OTU 1 seq
prokMSA_id:16031 clone BC09
2.30.9.1.3.4644 OTU 1 seq
prokMSA_id:16033 clone CA26
2.30.9.1.3.4645 OTU 1 seq
prokMSA_id:40164 clone p-1986-959-5 
2.30.9.1.3.4646 OTU 1 seq
prokMSA_id:71858 ckncm321-B7-11 
2.30.9.1.3.4648 OTU 1 seq
prokMSA_id:16036 clone RC37
2.30.9.1.4 STR.16SX_SUBGROUP 6 seqs
2.30.9.1.4.4161 OTU 1 seq
prokMSA_id:16083 clone WCHA1-53
2.30.9.1.4.4176 OTU 1 seq
prokMSA_id:16087 clone Sva0855
2.30.9.1.4.4320 OTU 2 seqs
prokMSA_id:16082 str. 16SX-2
prokMSA_id:16085 str. 16SX-1
2.30.9.1.4.4399 OTU 1 seq
prokMSA_id:43679 from anoxic bulk soil clone BSV87
2.30.9.1.4.4410 OTU 1 seq
prokMSA_id:84131 clone:ALU10
2.30.9.2 C.BOTULINUM_GROUP 275 seqs
2.30.9.2.1 CCS.OWENSENSIS_SUBGROUP 16 seqs
2.30.9.2.1.4178 OTU 1 seq
prokMSA_id:16088 Caldicellulosiruptor owensensis str. OL ATCC 700167
2.30.9.2.1.4207 OTU 1 seq
prokMSA_id:16091 str. SP83
2.30.9.2.1.4213 OTU 2 seqs
prokMSA_id:16094 Caldicellulosiruptor lactoaceticus str. 6A DSM 9545 . X82842
prokMSA_id:16095 Caldicellulosiruptor kristjanssonii str. I77R1B
2.30.9.2.1.4338 OTU 2 seqs
prokMSA_id:16103 "Anaerocellum thermophilum" str. Z-1203 ?
prokMSA_id:16105 "Anaerocellum thermophilum" str. Z-1203 ?
2.30.9.2.1.4336 OTU 4 seqs
prokMSA_id:16089 str. Rt8B.4
prokMSA_id:16092 str. Ok9.B1
prokMSA_id:16096 str. Rt8.B7
prokMSA_id:16102 str. Rt8. B15
2.30.9.2.1.4543 OTU 2 seqs
prokMSA_id:16098 Caldicellulosiruptor saccharolyticus str. Tp8T.6.3.3.1 ATCC 
prokMSA_id:16099 str. COMP.B1
2.30.9.2.1.4553 OTU 2 seqs
prokMSA_id:16093 Thermoanaerobacter "cellulolyticus" str. NA 10 IFO 14436
prokMSA_id:16100 Thermoanaerobacter "cellulolyticus" str. NA 10 IFO 14436
2.30.9.2.1.4562 OTU 2 seqs
prokMSA_id:16101 str. Wai35 B1
prokMSA_id:16104 str. RI2.B1
2.30.9.2.2 OX.PFENNIGII 2 seqs
2.30.9.2.2.4472 OTU 1 seq
prokMSA_id:49771 from anoxic bulk soil clone BSV07
2.30.9.2.2.4642 OTU 1 seq
prokMSA_id:16106 Oxobacter pfennigii DSM 3222
2.30.9.2.3 CLR.FERVIDUS_SUBGROUP 15 seqs
2.30.9.2.3.4163 OTU 1 seq
prokMSA_id:16110 Caloramator coolhaasii str. Z
2.30.9.2.3.4287 OTU 1 seq
prokMSA_id:34407 Caloramator viterbiensis 
2.30.9.2.3.4306 OTU 1 seq
prokMSA_id:86415 Clostridiaceae clone PD-UASB-4 
2.30.9.2.3.4314 OTU 2 seqs
prokMSA_id:45031 from anoxic bulk soil clone BSV54
prokMSA_id:46414 from anoxic bulk soil clone BSV34
2.30.9.2.3.4382 OTU 5 seqs
prokMSA_id:16107 Thermobrachium celer str. JW/YL-NZ35 . X99238
prokMSA_id:16108 Caloramator indicus str. IndiB4 ACM 3982
prokMSA_id:38722 Caloramator sp. JW/JH-1 clone JH-5long AF286863
prokMSA_id:64744 Caloramator uzoniensis AY102936
prokMSA_id:68459 Caloramator uzoniensis 
2.30.9.2.3.4431 OTU 1 seq
prokMSA_id:32182 Clostridium cylindrosporum strain DSM 605
2.30.9.2.3.4597 OTU 2 seqs
prokMSA_id:16112 unnamed organism
prokMSA_id:65710 soil clone C06 
2.30.9.2.3.4599 OTU 1 seq
prokMSA_id:36208 from anoxic bulk soil clone BSV83
2.30.9.2.3.4647 OTU 1 seq
prokMSA_id:16109 Caloramator proteolyticus str. Uruguayensis
2.30.9.2.5 C.THERMOBUTYRICUM_SUBGROUP 16 seqs
2.30.9.2.5.4170 OTU 1 seq
prokMSA_id:66191 clone IA-23
2.30.9.2.5.4325 OTU 1 seq
prokMSA_id:78194 Clostridiaceae clone:Rs-K21
2.30.9.2.5.4341 OTU 2 seqs
prokMSA_id:23882 Clostridium haemolyticum strain DSM 5565
prokMSA_id:28961 Clostridium novyi strain:ATCC27323
2.30.9.2.5.4392 OTU 1 seq
prokMSA_id:16130 clone HB69
2.30.9.2.5.4396 OTU 1 seq
prokMSA_id:16131 clone HA16
2.30.9.2.5.4517 OTU 1 seq
prokMSA_id:23003 clone p-2513-18B5 
2.30.9.2.5.4526 OTU 1 seq
prokMSA_id:59913 spirochete clone ccslm210 
2.30.9.2.5.4587 OTU 1 seq
prokMSA_id:16125 Clostridium botulinum str. 468 toxin C
2.30.9.2.5.4607 OTU 7 seqs
prokMSA_id:16120 Clostridium homopropionicum DSM 5847
prokMSA_id:16121 Clostridium sp. LMG 16094
prokMSA_id:16123 Clostridium novyi str. A NCTC 538
prokMSA_id:16124 Clostridium novyi str. 151 L.S. McClung ATCC 17861
prokMSA_id:16127 Clostridium botulinum str. 2023 ATCC 17851. L37591
prokMSA_id:19010 Clostridium novyi strain:ATCC19402 AB041866
prokMSA_id:29673 Clostridium novyi AB045606
2.30.9.2.6 C.BOTULINUM_SUBGROUP 21 seqs
2.30.9.2.6.4193 OTU 11 seqs
prokMSA_id:16132 Clostridium putrificum str. 2318 ATCC 25784
prokMSA_id:16133 Clostridium botulinum str. 8G ATCC 25764. L37593
prokMSA_id:16139 Clostridium botulinum str. KYTO-F. X73844
prokMSA_id:16140 Clostridium sporogenes str. 388 ATCC 3584
prokMSA_id:16141 Clostridium botulinum str. LP1284. AF105402
prokMSA_id:16143 Clostridium botulinum NCTC 7272. X68185
prokMSA_id:16147 Clostridium botulinum str. A2 VPI 14856. L37586
prokMSA_id:16148 Clostridium botulinum ATCC 25763
prokMSA_id:16149 Clostridium botulinum str. Langeland NCTC 10281. X68172
prokMSA_id:16154 Clostridium botulinum NCTC 7273. X68186
prokMSA_id:90396 Clostridium sp. MD4 AY321658
2.30.9.2.6.4197 OTU 1 seq
prokMSA_id:34959 Clostridium acidisoli strain CK74
2.30.9.2.6.4274 OTU 1 seq
prokMSA_id:32657 clone RFLP 18E 
2.30.9.2.6.4318 OTU 1 seq
prokMSA_id:16769 anoxSCC-25 
2.30.9.2.6.4343 OTU 1 seq
prokMSA_id:31072 from anoxic bulk soil clone BSV78
2.30.9.2.6.4414 OTU 1 seq
prokMSA_id:16138 Clostridium magnum DSM 2767
2.30.9.2.6.4423 OTU 1 seq
prokMSA_id:16142 Clostridium pasteurianum ATCC 6013
2.30.9.2.6.4427 OTU 1 seq
prokMSA_id:16144 Clostridium tyrobutyricum NIZO 51
2.30.9.2.6.4436 OTU 1 seq
prokMSA_id:16145 clone SJA-65
2.30.9.2.6.4506 OTU 1 seq
prokMSA_id:17161 Clostridium autoethanogenum strain DSM 10061
2.30.9.2.6.4555 OTU 1 seq
prokMSA_id:16153 Clostridium tyrobutyricum ATCC 25755
2.30.9.2.7 C.SCATOLOGENES 3 seqs
2.30.9.2.7.4532 OTU 3 seqs
prokMSA_id:20034 Clostridium scatologenes Y18813
prokMSA_id:64232 Clostridium scatologenes strain FP AJ427628
prokMSA_id:77703 Clostridium carboxidivorans 
2.30.9.2.8 C.COCHLEARIUM_SUBGROUP 23 seqs
2.30.9.2.8.4174 OTU 2 seqs
prokMSA_id:16157 Clostridium tetanomorphum str. H1 NCIMB 11547. S46737
prokMSA_id:16159 Clostridium tetanomorphum str. H1 NCIMB 11547
2.30.9.2.8.4204 OTU 1 seq
prokMSA_id:16163 Clostridium sp. str. RPec1
2.30.9.2.8.4206 OTU 1 seq
prokMSA_id:16164 Clostridium acetireducens str. 30A DSM 7310
2.30.9.2.8.4229 OTU 3 seqs
prokMSA_id:79176 Clostridium tetani E88 section 1 of 10 of the complete genom
prokMSA_id:79236 Clostridium tetani E88 section 2 of 10 of the complete genom
prokMSA_id:79542 Clostridium tetani E88 section 10 of 10 of the complete geno
2.30.9.2.8.4296 OTU 1 seq
prokMSA_id:71518 Clostridiaceae str. A4d 
2.30.9.2.8.4302 OTU 1 seq
prokMSA_id:49113 clone GOUTA13 
2.30.9.2.8.4312 OTU 2 seqs
prokMSA_id:21985 clone HuCA3
prokMSA_id:44983 clone HuCA6
2.30.9.2.8.4323 OTU 2 seqs
prokMSA_id:34479 Clostridium sp. T7 AF281142
prokMSA_id:44328 Clostridium sp. strain ccug 42741
2.30.9.2.8.4378 OTU 1 seq
prokMSA_id:29102 anoxSCC-33 
2.30.9.2.8.4419 OTU 2 seqs
prokMSA_id:29799 anoxSCC-44 
prokMSA_id:45660 anoxSCC-27 AJ387882
2.30.9.2.8.4422 OTU 1 seq
prokMSA_id:30766 from anoxic bulk soil clone BSV50
2.30.9.2.8.4432 OTU 1 seq
prokMSA_id:33242 clone p-4524-4Wb3 
2.30.9.2.8.4470 OTU 1 seq
prokMSA_id:16166 Clostridium tetani NCTC 279
2.30.9.2.8.4579 OTU 1 seq
prokMSA_id:85102 rumen clone BS6 
2.30.9.2.8.4616 OTU 3 seqs
prokMSA_id:16158 clone RC30
prokMSA_id:27711 rumen 4C0d-10 
prokMSA_id:83170 rumen clone BS7 
2.30.9.2.9 C.SUBTERMINALE_SUBGROUP 14 seqs
2.30.9.2.9.4154 OTU 1 seq
prokMSA_id:79436 Clostridium tunisiense 
2.30.9.2.9.4177 OTU 1 seq
prokMSA_id:31319 Clostridium subterminale isolate DSM 2636 
2.30.9.2.9.4259 OTU 1 seq
prokMSA_id:16180 clone RB15
2.30.9.2.9.4275 OTU 1 seq
prokMSA_id:16181 Clostridium argentinense ATCC 27322
2.30.9.2.9.4340 OTU 2 seqs
prokMSA_id:16176 Clostridium PENDANT-16
prokMSA_id:16177 Clostridium PENDANT-1
2.30.9.2.9.4348 OTU 1 seq
prokMSA_id:27541 anoxSCC-7 
2.30.9.2.9.4525 OTU 1 seq
prokMSA_id:78350 clone:Rs-Q18
2.30.9.2.9.4530 OTU 1 seq
prokMSA_id:46741 clone UASB_brew_B68 
2.30.9.2.9.4575 OTU 5 seqs
prokMSA_id:16178 Clostridium argentinense ATCC 27322
prokMSA_id:16179 Clostridium argentinense str. 113/30 toxin G
prokMSA_id:16182 Clostridium subterminale NCIMB 10746
prokMSA_id:16183 Clostridium sp. DSM 1975
prokMSA_id:39409 Clostridium subterminale isolate DSM 758 
2.30.9.2.10 C.ACETOBUTYLICUM_SUBGROUP 11 seqs
2.30.9.2.10.4190 OTU 1 seq
prokMSA_id:70408 RSb33 
2.30.9.2.10.4264 OTU 1 seq
prokMSA_id:16185 Clostridium collagenovorans DSM 3089
2.30.9.2.10.4439 OTU 1 seq
prokMSA_id:16190 Clostridium acetobutylicum NCDO 1712
2.30.9.2.10.4551 OTU 2 seqs
prokMSA_id:16187 Clostridium acetobutylicum ATCC 824
prokMSA_id:72289 C.acetobutylicum ATCC 824 T 
2.30.9.2.10.4574 OTU 6 seqs
prokMSA_id:16189 Clostridium acetobutylicum ATCC 824
prokMSA_id:16191 Clostridium acetobutylicum DSM 1731
prokMSA_id:18375 Clostridium felsineum NCIMB 10690 AF270501
prokMSA_id:20598 Clostridium felsineum DSM 794 AF270502
prokMSA_id:46897 Clostridium roseum strain DSM 6424
prokMSA_id:47394 Clostridium acetobutylicum ATCC824 complete genome
2.30.9.2.11 C.BARATI_SUBGROUP 154 seqs
2.30.9.2.11.1 C.CADAVERIS_SUBGROUP 7 seqs
2.30.9.2.11.1.4309 OTU 6 seqs
prokMSA_id:16192 unnamed organism
prokMSA_id:16193 unnamed organism
prokMSA_id:16194 unnamed organism
prokMSA_id:34378 clone S25-6
prokMSA_id:70665 of a segment E11861
prokMSA_id:72493 of novel Segmented filamentous BAL01 E11886
2.30.9.2.11.1.4448 OTU 1 seq
prokMSA_id:16195 unnamed organism
2.30.9.2.11.2 C.ALGIDICARNIS_SUBGROUP 3 seqs
2.30.9.2.11.2.4211 OTU 1 seq
prokMSA_id:81682 Clostridium fallax isolate VA24831_02 
2.30.9.2.11.2.4393 OTU 2 seqs
prokMSA_id:16199 Anaerobacter polyendosporus
prokMSA_id:42703 Anaerobacter polyendosporus strain DSM 5272
2.30.9.2.11.3 C.PERFRINGENS_SUBGROUP 26 seqs
2.30.9.2.11.3.4337 OTU 3 seqs
prokMSA_id:16201 Sarcina ventriculi DSM 286
prokMSA_id:16202 Sarcina ventriculi
prokMSA_id:73781 clone p-37-a5 AF371846
2.30.9.2.11.3.4391 OTU 1 seq
prokMSA_id:16203 Sarcina ventriculi str. VPI-s-7-31 GIFU 7886
2.30.9.2.11.3.4403 OTU 1 seq
prokMSA_id:16207 clone D1-11
2.30.9.2.11.3.4576 OTU 21 seqs
prokMSA_id:16206 Clostridium perfringens str. CPN50 =rrnB operon H3 fragment
prokMSA_id:16210 Clostridium perfringens str. antibioticNitrofurantoin-resist
prokMSA_id:18408 Clostridium sp. AB&J 
prokMSA_id:26184 clone p-4636-2Wa2 
prokMSA_id:46789 Clostridium perfringens complete genome NC_003366
prokMSA_id:52947 Clostridium perfringens operon 23S 5S genes complete sequenc
prokMSA_id:53902 Clostridium perfringens rrnE operon 23S 5S genes complete se
prokMSA_id:54029 Clostridium perfringens rrnD operon 23S 5S genes complete se
prokMSA_id:54412 Clostridium perfringens rrnC operon 23S 5S genes complete se
prokMSA_id:54675 Clostridium perfringens rrnB operon 23S 5S genes complete se
prokMSA_id:54809 Clostridium perfringens rrnF operon 23S 5S genes complete se
prokMSA_id:54834 Clostridium perfringens rrnG operon 23S 5S genes complete se
prokMSA_id:63982 Clostridium perfringens str. 13 complete genome section 10/1
prokMSA_id:63983 Clostridium perfringens str. 13 complete genome section 9/10
prokMSA_id:68917 Clostridium perfringens rrnH operon tRNA-Ile 23S 5S genes co
prokMSA_id:68918 Clostridium perfringens rrnI operon tRNA-Ile 23S 5S genes co
prokMSA_id:68919 Clostridium perfringens rrnJ operon tRNA-Ile 23S 5S genes co
prokMSA_id:70420 OI1612 
prokMSA_id:73346 Clostridium perfringens 
prokMSA_id:75452 Swine manure 37-3 
prokMSA_id:77120 Swine manure 37-4 
2.30.9.2.11.4 C.AURANTIBUTYRICUM_SUBGROUP 49 seqs
2.30.9.2.11.4.4153 OTU 1 seq
prokMSA_id:16227 Clostridium vincentii
2.30.9.2.11.4.4172 OTU 1 seq
prokMSA_id:40062 multiforme 
2.30.9.2.11.4.4175 OTU 1 seq
prokMSA_id:41948 clone p-2106-s959-2 
2.30.9.2.11.4.4208 OTU 2 seqs
prokMSA_id:16239 Clostridium gasigenes DSM 12272
prokMSA_id:16240 Clostridium gasigenes str. R26. AF143692
2.30.9.2.11.4.4280 OTU 2 seqs
prokMSA_id:62683 low G+C Gram-positive clone ML623J-27 
prokMSA_id:63829 Bacillus sp. clone ML1228J-10 
2.30.9.2.11.4.4304 OTU 1 seq
prokMSA_id:62673 low G+C Gram-positive clone ML635J-34 
2.30.9.2.11.4.4328 OTU 2 seqs
prokMSA_id:27099 RSb8 
prokMSA_id:29859 RSb3 
2.30.9.2.11.4.4339 OTU 6 seqs
prokMSA_id:16218 Clostridium septicum ATCC 12464
prokMSA_id:16235 Clostridium chauvoei ATCC 10092
prokMSA_id:35112 clone p-4936-6Wb2 
prokMSA_id:37589 Clostridium disporicum strain DSM 5521 Y18176
prokMSA_id:41092 clone p-2117-s959-2 
prokMSA_id:70497 Clostridium septicum 
2.30.9.2.11.4.4426 OTU 1 seq
prokMSA_id:16214 Clostridium quinii DSM 6736
2.30.9.2.11.4.4438 OTU 1 seq
prokMSA_id:16219 Clostridium sp. str. WV6
2.30.9.2.11.4.4460 OTU 1 seq
prokMSA_id:16220 Clostridium frigidicarnis str. SPL77A
2.30.9.2.11.4.4467 OTU 1 seq
prokMSA_id:16230 Clostridium celatum DSM 1785
2.30.9.2.11.4.4516 OTU 1 seq
prokMSA_id:47464 clone p-2194-s959-3 
2.30.9.2.11.4.4547 OTU 3 seqs
prokMSA_id:16225 Clostridium paraputrificum ATCC 25780
prokMSA_id:16228 Clostridium paraputrificum str. M-21
prokMSA_id:16237 Clostridium barati VPI 1586. M59102
2.30.9.2.11.4.4561 OTU 2 seqs
prokMSA_id:16216 Clostridium longisporum DSM 8431
prokMSA_id:16223 Clostridium chartatabidum DSM 5482
2.30.9.2.11.4.4590 OTU 1 seq
prokMSA_id:25889 Clostridium sartagoformum strain DSM 129
2.30.9.2.11.4.4598 OTU 13 seqs
prokMSA_id:16213 Clostridium barati str. 2227 ATCC 27638
prokMSA_id:16215 Clostridium paraputrificum ATCC 25780
prokMSA_id:16217 nitritogenes DSM 3985
prokMSA_id:16232 Clostridium barati ATCC 43756
prokMSA_id:16233 multiforme DSM 20694
prokMSA_id:16234 Clostridium absonum DSM 599
prokMSA_id:16256 Clostridium SP3 str. SP3
prokMSA_id:16276 Clostridium sp. str. RXyl1
prokMSA_id:31869 nitritogenes 
prokMSA_id:71927 Clostridium butyricum 
prokMSA_id:74851 budayi 
prokMSA_id:92509 Clostridium baratii clone D12 AY341243
prokMSA_id:93007 Clostridium baratii clone I11 AY341242
2.30.9.2.11.4.4600 OTU 2 seqs
prokMSA_id:30877 from anoxic bulk soil clone BSV62
prokMSA_id:74580 from anoxic bulk soil clone BSV82
2.30.9.2.11.4.4606 OTU 1 seq
prokMSA_id:16212 Clostridium aurantibutyricum str. 2038 NCIMB 10659
2.30.9.2.11.4.4609 OTU 2 seqs
prokMSA_id:16224 Clostridium cellulovorans DSM 3052
prokMSA_id:16231 Clostridium cellulovorans DSM 3052
2.30.9.2.11.4.4629 OTU 1 seq
prokMSA_id:34679 clone p-2171-s959-3 
2.30.9.2.11.4.4635 OTU 3 seqs
prokMSA_id:16236 Clostridium tertium ATCC 14573
prokMSA_id:33186 Clostridium sp. 75064 AF227826
prokMSA_id:38488 Clostridium tertium strain DSM 2485 Y18174
2.30.9.2.11.5 C.BUTYRICUM_SUBGROUP 69 seqs
2.30.9.2.11.5.4169 OTU 1 seq
prokMSA_id:56713 clone cvf70173 
2.30.9.2.11.5.4185 OTU 1 seq
prokMSA_id:27375 Clostridium uliginosum strain CK55
2.30.9.2.11.5.4191 OTU 1 seq
prokMSA_id:49549 Clostridium beijerinckii strain:JCM 7847
2.30.9.2.11.5.4203 OTU 1 seq
prokMSA_id:37089 from anoxic bulk soil clone BSV80
2.30.9.2.11.5.4231 OTU 1 seq
prokMSA_id:27748 clone HTE5 
2.30.9.2.11.5.4257 OTU 1 seq
prokMSA_id:20099 equine intestinal sp. DL28 clone DL28
2.30.9.2.11.5.4319 OTU 2 seqs
prokMSA_id:16272 clone RFN42
prokMSA_id:16273 clone RFN54
2.30.9.2.11.5.4351 OTU 1 seq
prokMSA_id:51473 clone:BCf10-24
2.30.9.2.11.5.4353 OTU 5 seqs
prokMSA_id:16242 Clostridium botulinum str. Eklund 202F ATCC 23387. X68170
prokMSA_id:16245 Clostridium botulinum str. 36208 ATCC 9564
prokMSA_id:16246 Clostridium botulinum str. Iwanai. X68171
prokMSA_id:16262 Clostridium botulinum str. Eklund 17B ATCC 25765. X68173
prokMSA_id:88762 Clostridium botulinum strain AIP 355.02 AY303799
2.30.9.2.11.5.4398 OTU 1 seq
prokMSA_id:24896 CCAJG161 
2.30.9.2.11.5.4462 OTU 1 seq
prokMSA_id:43602 anoxSCC-31 
2.30.9.2.11.5.4466 OTU 1 seq
prokMSA_id:35865 clone p-406-o3 
2.30.9.2.11.5.4480 OTU 1 seq
prokMSA_id:73000 Clostridium neonatale 
2.30.9.2.11.5.4519 OTU 1 seq
prokMSA_id:35306 from anoxic bulk soil clone BSV86
2.30.9.2.11.5.4560 OTU 30 seqs
prokMSA_id:16243 Clostridium caliptrosporum DSM 5905
prokMSA_id:16248 Clostridium saccharoperbutylacetonicum str. N1-4 ATCC 13564
prokMSA_id:16250 Clostridium beijerinckii NCIMB 9362
prokMSA_id:16258 Clostridium corinoforum DSM 5906
prokMSA_id:16259 Clostridium beijerinckii DSM 791
prokMSA_id:16263 Clostridium beijerinckii NCIMB 8052
prokMSA_id:16264 Clostridium favososporum str. BKM B-1360 DSM 5907
prokMSA_id:16266 Clostridium acetobutylicum NCP 262
prokMSA_id:16268 Clostridium beijerinckii NCIMB 8052
prokMSA_id:16270 Clostridium acetobutylicum NCP 262
prokMSA_id:16271 Clostridium puniceum DSM 2619
prokMSA_id:16275 Clostridium beijerinckii NCIMB 8052
prokMSA_id:16277 Clostridium beijerinckii NCIMB 8052
prokMSA_id:27405 Clostridium roseum strain DSM 51
prokMSA_id:32781 Clostridium beijerinckii strain:JCM 7839
prokMSA_id:34846 Clostridium beijerinckii strain:JCM 7844
prokMSA_id:39254 Clostridium beijerinckii strain:JCM 7845
prokMSA_id:47159 Clostridium beijerinckii strain:JCM 7833
prokMSA_id:59906 low G+C Gram-positive clone ccslm2120 
prokMSA_id:67023 Clostridium butyricum strain E5
prokMSA_id:67024 Clostridium butyricum strain DSM 5431
prokMSA_id:67025 Clostridium butyricum strain DSM 5430
prokMSA_id:75278 clone HC-31 
prokMSA_id:84677 Clostridium chromoreductans 
prokMSA_id:96776 Clostridium sp. UsIt101-1 AB114256
prokMSA_id:97280 Clostridium sp. UsIt102-2 AB114257
prokMSA_id:97482 Clostridium sp. UsS102-1 AB114254
prokMSA_id:97998 Clostridium sp. Kas202-1 AB114252
prokMSA_id:98062 Clostridium sp. Usu-S-R3 AB114255
prokMSA_id:98508 Clostridium sp. UsS101-2 AB114253
2.30.9.2.11.5.4589 OTU 6 seqs
prokMSA_id:16251 Clostridium kainantoi DSM 523
prokMSA_id:16253 Clostridium butyricum str. strain MW8
prokMSA_id:16255 Clostridium butyricum ATCC 43755
prokMSA_id:19926 Clostridium butyricum strain IBUN 64A
prokMSA_id:21382 Clostridium butyricum strain IBUN 125C
prokMSA_id:33631 Clostridium butyricum strain IBUN 22A
2.30.9.2.11.5.4610 OTU 14 seqs
prokMSA_id:16204 Sarcina maxima str. K66 DSM 316
prokMSA_id:32184 Clostridium putrefaciens 
prokMSA_id:37683 Clostridium putrifaciens strain DSM 1291
prokMSA_id:41634 Clostridium algidicarnis 
prokMSA_id:82617 rumen clone BS35 AY244986
prokMSA_id:82860 rumen clone BS31 AY244982
prokMSA_id:82928 rumen clone BS30 AY244981
prokMSA_id:83292 rumen clone BS37 AY244988
prokMSA_id:85204 rumen clone BS33 AY244984
prokMSA_id:85319 rumen clone BS26 AY244977
prokMSA_id:85792 rumen clone BS40 AY244991
prokMSA_id:85888 rumen clone BS27 AY244978
prokMSA_id:86108 rumen clone BS38 AY244989
prokMSA_id:86395 rumen clone BS29 AY244980