INFO: Program read 77753510 bases 
 INFO: Total N's read = 3218979
 nreps = 1238 
 1508 chr18rc 28297 chr18 961129 3255 0.898003 929577
 1596 chr18rc 28875 chr18 12192363 3029 0.901618 12160459
 1512 chr18rc 28880 chr18 4462064 3024 0.908069 4430160
 1518 chr18rc 28883 chr18 13965747 3053 0.903046 13933811
 1551 chr18rc 28886 chr18 68198678 3018 0.908549 68166774
 1890 chr18rc 28889 chr18 68544985 2983 0.900436 68513113
 1803 chr18rc 28890 chr18 37655514 3014 0.901792 37623610
 1558 chr18rc 28893 chr18 70418653 3011 0.906676 70386749
 1530 chr18rc 28894 chr18 47758238 3010 0.909635 47726334
 1545 chr18rc 28896 chr18 56856064 3008 0.905585 56824160
 1801 chr18rc 28901 chr18 22086917 3003 0.910090 22055013
 1618 chr18rc 28921 chr18 51814073 2919 0.905790 51782233
 163 chr18 28960 chr18 4997294 2944 0.952790 4965390
 349 chr18 28960 chr18 7959611 2976 0.947240 7927675
 372 chr18 28960 chr18 20000762 2944 0.948370 19968858
 181 chr18 28960 chr18 24750671 2944 0.950070 24718767
 164 chr18 28960 chr18 24981135 2944 0.953460 24949231
 373 chr18 28960 chr18 32676903 2944 0.952110 32644999
 350 chr18 28960 chr18 35290862 2944 0.952790 35258958
 182 chr18 28960 chr18 38313361 2944 0.953800 38281457
 183 chr18 28960 chr18 39102866 2944 0.953460 39070962
 184 chr18 28960 chr18 39246140 2944 0.952790 39214236
 185 chr18 28960 chr18 45077902 2944 0.955160 45045998
 186 chr18 28960 chr18 50588841 2784 0.950790 50557097
 187 chr18 28960 chr18 51842080 2944 0.948370 51810176
 167 chr18 28960 chr18 54715088 2944 0.953800 54683184
 188 chr18 28960 chr18 55174625 2944 0.954140 55142721
 351 chr18 28960 chr18 60361659 2944 0.952450 60329755
 189 chr18 28960 chr18 61315765 2944 0.951770 61283861
 190 chr18 28960 chr18 73324957 2944 0.951770 73293053
 165 chr18 28992 chr18 40757207 2848 0.951190 40725367
 1571 chr18rc 29137 chr18 74890833 2767 0.903506 74858929
 1602 chr18rc 29181 chr18 25884573 2563 0.905189 25852829
 166 chr18 29184 chr18 40791999 2720 0.952570 40760095
 1590 chr18rc 29290 chr18 5671210 2614 0.889824 5639306
 162 chr18 29344 chr18 3727311 2560 0.951170 3695407
 180 chr18 29344 chr18 15360570 2560 0.944530 15328666
 1385 chr18rc 527185 chr18 4463889 2799 0.919614 3933905
 1028 chr18rc 527188 chr18 13967604 2796 0.941345 13437620
 1542 chr18rc 527191 chr18 53169463 2793 0.907268 52639479
 1049 chr18rc 527191 chr18 68200503 2793 0.944504 67670519
 1430 chr18rc 527195 chr18 37657339 2789 0.911796 37127355
 1261 chr18rc 527195 chr18 66238779 2789 0.906777 65708795
 1409 chr18rc 527198 chr18 25207422 2786 0.921393 24677438
 1557 chr18rc 527198 chr18 70420478 2786 0.933597 69890494
 1786 chr18rc 527199 chr18 28817663 2785 0.908797 28287679
 1355 chr18rc 527199 chr18 47760063 2785 0.942549 47230079
 824 chr18rc 527201 chr18 56857889 2783 0.939274 56327905
 820 chr18rc 527206 chr18 22088742 2778 0.919366 21558758
 1417 chr18rc 527214 chr18 30326350 2770 0.926354 29796366
 116 chr18 527264 chr18 7958010 2720 0.967650 7428026
 338 chr18 527264 chr18 19999161 2720 0.953680 19469177
 344 chr18 527264 chr18 31800627 2720 0.950740 31270643
 149 chr18 527264 chr18 32675302 2720 0.960290 32145318
 150 chr18 527264 chr18 35289261 2720 0.970590 34759277
 345 chr18 527264 chr18 39101265 2720 0.954040 38571281
 284 chr18 527264 chr18 45076301 2720 0.968010 44546317
 151 chr18 527264 chr18 54713487 2720 0.953310 54183503
 152 chr18 527264 chr18 55173024 2720 0.958820 54643040
 153 chr18 527264 chr18 60360058 2720 0.969490 59830074
 154 chr18 527264 chr18 73323356 2720 0.971690 72793372
 436 chr18 527392 chr18 24749198 2592 0.953320 24219214
 1206 chr18rc 652986 chr18 50588026 3206 0.915783 49931834
 1209 chr18rc 961111 chr18 4997207 2697 0.903967 4033399
 1140 chr18rc 961111 chr18 35290743 2729 0.900696 34326903
 1147 chr18rc 961111 chr18 45077783 2729 0.902895 44113943
 1136 chr18rc 961112 chr18 24750552 2728 0.896628 23786712
 1138 chr18rc 961112 chr18 24981016 2728 0.888196 24017176
 857 chr18rc 961113 chr18 54714969 2727 0.897323 53751129
 1271 chr18rc 961114 chr18 38313242 2726 0.900954 37349402
 1232 chr18rc 961115 chr18 39102747 2725 0.900550 38138907
 1221 chr18rc 961118 chr18 61315646 2722 0.900441 60351806
 849 chr18rc 961123 chr18 20000643 2717 0.898049 19036803
 1127 chr18rc 961124 chr18 7959492 2716 0.913108 6995652
 1218 chr18rc 961124 chr18 60361540 2716 0.906848 59397700
 1144 chr18rc 961125 chr18 39246021 2715 0.905341 38282181
 1160 chr18rc 961126 chr18 73324838 2714 0.911201 72360998
 1158 chr18rc 961129 chr18 51841961 2711 0.906677 50878121
 1159 chr18rc 961130 chr18 55174506 2710 0.905904 54210666
 1139 chr18rc 961136 chr18 32676784 2704 0.902737 31712944
 1205 chr18rc 961138 chr18 50588722 2702 0.900444 49624882
 438 chr18 961184 chr18 4462471 2656 0.950300 3498631
 481 chr18 961184 chr18 12192770 2656 0.948420 11228930
 439 chr18 961184 chr18 13966186 2656 0.949550 13002346
 572 chr18 961184 chr18 22087324 2656 0.947670 21123484
 606 chr18 961184 chr18 37655921 2656 0.947670 36692081
 1302 chr18rc 961184 chr18 40757152 2560 0.903516 39793408
 440 chr18 961184 chr18 47758645 2656 0.949920 46794805
 441 chr18 961184 chr18 56856471 2656 0.953690 55892631
 442 chr18 961184 chr18 68199085 2656 0.951810 67235245
 614 chr18 961184 chr18 68545360 2656 0.939010 67581520
 385 chr18 961184 chr18 70419060 2656 0.952180 69455220
 482 chr18 961216 chr18 51814448 2560 0.950780 50850672
 1142 chr18rc 961234 chr18 37036594 2606 0.900614 36072754
 772 chr18rc 1508741 chr18 35288421 2747 0.898071 33776933
 786 chr18rc 1508741 chr18 45075461 2747 0.893338 43563973
 793 chr18rc 1508743 chr18 54712775 2617 0.901796 53201415
 754 chr18rc 1508747 chr18 31799787 2741 0.906239 30288299
 1121 chr18rc 1508753 chr18 19998417 2639 0.910951 18487025
 743 chr18rc 1508754 chr18 7957170 2734 0.903804 6445682
 814 chr18rc 1508756 chr18 73322516 2732 0.907028 71811028
 804 chr18rc 1508760 chr18 55172184 2728 0.910924 53660696
 763 chr18rc 1508766 chr18 32674462 2722 0.901543 31162974
 1202 chr18rc 1508772 chr18 46631012 2684 0.903502 45119556
 638 chr18 1508800 chr18 4464761 2624 0.950080 2953337
 520 chr18 1508800 chr18 13968476 2688 0.946060 12456988
 105 chr18 1508800 chr18 22089614 2688 0.950150 20578126
 234 chr18 1508800 chr18 25208294 2592 0.945990 23696902
 378 chr18 1508800 chr18 30327222 2688 0.947920 28815734
 379 chr18 1508800 chr18 37658211 2688 0.943820 36146723
 560 chr18 1508800 chr18 47760935 2688 0.947540 46249447
 597 chr18 1508800 chr18 53170335 2688 0.946060 51658847
 106 chr18 1508800 chr18 56858761 2688 0.949030 55347273
 235 chr18 1508800 chr18 57484497 2688 0.947540 55973009
 339 chr18 1508800 chr18 66239651 2688 0.950150 64728163
 561 chr18 1508800 chr18 68201375 2688 0.947540 66689887
 586 chr18 1508832 chr18 28818567 2656 0.956330 27307079
 734 chr18rc 1508932 chr18 5675396 2556 0.905321 4163908
 1260 chr18rc 2237615 chr18 66239951 2673 0.912458 63999663
 1813 chr18rc 2237616 chr18 33706000 2672 0.904566 31465712
 1725 chr18rc 2237619 chr18 28818835 2669 0.902960 26578547
 1715 chr18rc 2237619 chr18 47761235 2669 0.906332 45520947
 823 chr18rc 2237621 chr18 56859061 2667 0.911136 54618773
 1850 chr18rc 2237622 chr18 22181686 2666 0.906602 19941398
 819 chr18rc 2237626 chr18 22089914 2662 0.918858 19849626
 1719 chr18rc 2237629 chr18 57484797 2659 0.918766 55244509
 1815 chr18rc 2237643 chr18 53170635 2645 0.916446 50930347
 1721 chr18rc 2237643 chr18 68201675 2645 0.913800 65961387
 63 chr18 2237696 chr18 5675192 2592 0.955250 3434904
 64 chr18 2237696 chr18 7956966 2592 0.956400 5716678
 155 chr18 2237696 chr18 25708920 2592 0.950230 23468632
 65 chr18 2237696 chr18 31799583 2592 0.945220 29559295
 66 chr18 2237696 chr18 32674258 2592 0.957950 30433970
 67 chr18 2237696 chr18 35288217 2592 0.957180 33047929
 68 chr18 2237696 chr18 45075257 2592 0.953320 42834969
 70 chr18 2237696 chr18 73322312 2592 0.957950 71082024
 69 chr18 2237728 chr18 55172012 2560 0.952340 52931724
 1595 chr18rc 3727226 chr18 12192378 2630 0.904182 8462522
 1826 chr18rc 3727231 chr18 4462079 2625 0.904381 732223
 1832 chr18rc 3727232 chr18 74890848 2624 0.900152 71160992
 1598 chr18rc 3727234 chr18 13965794 2622 0.911899 10235938
 1621 chr18rc 3727237 chr18 68198693 2619 0.910271 64468837
 1868 chr18rc 3727240 chr18 68544968 2616 0.888761 64815112
 1761 chr18rc 3727241 chr18 37655529 2615 0.900191 33925673
 1624 chr18rc 3727244 chr18 70418668 2612 0.909265 66688812
 1607 chr18rc 3727245 chr18 47758253 2611 0.910379 44028397
 1619 chr18rc 3727247 chr18 56856079 2609 0.911077 53126223
 1691 chr18rc 3727252 chr18 22086932 2604 0.912442 18357076
 1589 chr18rc 3727257 chr18 5671225 2599 0.913428 1941369
 1617 chr18rc 3727272 chr18 51814112 2496 0.951120 48084344
 168 chr18 3727296 chr18 4997663 2560 0.953910 1267807
 1 chr18 3727296 chr18 7959980 2560 0.953130 4230124
 191 chr18 3727296 chr18 15360555 2560 0.943750 11630699
 331 chr18 3727296 chr18 20001131 2560 0.947660 16271275
 2 chr18 3727296 chr18 24751040 2560 0.951950 21021184
 169 chr18 3727296 chr18 24981504 2560 0.953130 21251648
 3 chr18 3727296 chr18 32677272 2560 0.951170 28947416
 4 chr18 3727296 chr18 35291231 2560 0.955470 31561375
 5 chr18 3727296 chr18 38313730 2560 0.952340 34583874
 192 chr18 3727296 chr18 39103235 2560 0.952730 35373379
 193 chr18 3727296 chr18 39246509 2560 0.950780 35516653
 170 chr18 3727296 chr18 40792144 2560 0.952340 37062288
 6 chr18 3727296 chr18 45078271 2560 0.953910 41348415
 7 chr18 3727296 chr18 51842449 2560 0.952730 48112593
 171 chr18 3727296 chr18 54715457 2560 0.951950 50985601
 194 chr18 3727296 chr18 55174994 2560 0.952340 51445138
 8 chr18 3727296 chr18 60362028 2560 0.950780 56632172
 195 chr18 3727296 chr18 61316134 2560 0.952730 57586278
 196 chr18 3727296 chr18 73325326 2560 0.953910 69595470
 988 chr18rc 4462053 chr18 61314949 3771 0.928931 56849125
 1217 chr18rc 4462059 chr18 60359627 4981 0.924513 55892587
 989 chr18rc 4462061 chr18 73322573 5331 0.929282 68855181
 979 chr18rc 4462063 chr18 40791919 2801 0.908247 36327055
 984 chr18rc 4462064 chr18 51841264 3760 0.920745 47375440
 986 chr18rc 4462065 chr18 55172241 5327 0.931857 50704849
 1112 chr18rc 4462071 chr18 32674519 5321 0.930840 28207127
 1106 chr18rc 4462078 chr18 4997214 3010 0.921595 532126
 1212 chr18rc 4462078 chr18 35288478 5314 0.935454 30821086
 980 chr18rc 4462078 chr18 45075518 5314 0.932443 40608126
 970 chr18rc 4462079 chr18 24749151 4449 0.926051 20282623
 1107 chr18rc 4462079 chr18 24980479 3585 0.899582 20514815
 985 chr18rc 4462080 chr18 54712800 5216 0.926956 50245504
 972 chr18rc 4462081 chr18 38312993 3295 0.923824 33847617
 974 chr18rc 4462082 chr18 39100930 4862 0.927190 34633986
 966 chr18rc 4462090 chr18 15360490 2614 0.893267 10895786
 1225 chr18rc 4462090 chr18 19998410 5270 0.921442 15531050
 860 chr18rc 4462091 chr18 7957227 5301 0.933031 3489835
 976 chr18rc 4462092 chr18 39245644 3412 0.923212 34780140
 574 chr18 4462144 chr18 5671290 2560 0.946480 1206586
 522 chr18 4462144 chr18 12192443 3328 0.957330 7726971
 387 chr18 4462144 chr18 13965859 5248 0.967610 9498467
 388 chr18 4462144 chr18 22086997 5248 0.966080 17619605
 391 chr18 4462144 chr18 37655594 5248 0.962080 33188202
 392 chr18 4462144 chr18 47758318 5248 0.967230 43290926
 393 chr18 4462144 chr18 56856144 5248 0.970080 52388752
 394 chr18 4462144 chr18 68198758 5248 0.967610 63731366
 615 chr18 4462144 chr18 68545033 3232 0.948640 64079657
 447 chr18 4462144 chr18 70418733 5024 0.964370 65951565
 448 chr18 4462144 chr18 74890913 2688 0.954990 70426081
 604 chr18 4462208 chr18 51814153 2976 0.946570 47348969
 982 chr18rc 4462233 chr18 50588665 2951 0.915283 46123481
 1894 chr18rc 4462247 chr18 40757031 2905 0.901893 36291879
 523 chr18 4462272 chr18 25884621 2528 0.950950 21419821
 1203 chr18rc 4462521 chr18 37036601 2599 0.906118 32571481
 1227 chr18rc 4462882 chr18 36590818 2750 0.906909 32125186
 1060 chr18rc 4462916 chr18 31799844 4476 0.919348 27332452
 1347 chr18rc 4462962 chr18 40131026 2670 0.906742 35665394
 600 chr18 4462976 chr18 59501735 3488 0.948390 55035271
 445 chr18 4463008 chr18 53168582 4384 0.960770 48701190
 608 chr18 4463264 chr18 68307564 2528 0.954110 63841772
 444 chr18 4463488 chr18 27491145 2688 0.956470 23024969
 390 chr18 4463552 chr18 30326013 3840 0.960940 25858621
 601 chr18 4463552 chr18 66238442 3840 0.956510 61771050
 524 chr18 4463616 chr18 28817390 3776 0.959480 24349998
 443 chr18 4463648 chr18 8048954 2528 0.958470 3582778
 389 chr18 4463936 chr18 25207469 3392 0.964330 20740141
 1667 chr18rc 4464093 chr18 46631101 3235 0.826584 42163773
 446 chr18 4464352 chr18 57484088 3040 0.956910 53016696
 1740 chr18rc 4994761 chr18 53170537 2583 0.900116 48173193
 1356 chr18rc 4994761 chr18 68198692 5465 0.905581 63198468
 1729 chr18rc 4994765 chr18 66239853 2579 0.899574 61242509
 1735 chr18rc 4994766 chr18 33705902 2578 0.889837 28708558
 1724 chr18rc 4994769 chr18 28818737 2575 0.895146 23821393
 1354 chr18rc 4994769 chr18 47758252 5457 0.905076 42758028
 1717 chr18rc 4994771 chr18 56856078 5455 0.906691 51855854
 1824 chr18rc 4994772 chr18 22181588 2572 0.900855 17184244
 1713 chr18rc 4994776 chr18 22086931 5450 0.907706 17086707
 1718 chr18rc 4994779 chr18 57484699 2565 0.902924 52487355
 367 chr18 4994816 chr18 5675354 2528 0.949760 678010
 370 chr18 4994816 chr18 7957128 5410 0.951294 2956904
 362 chr18 4994816 chr18 32674420 5410 0.949261 27674196
 363 chr18 4994816 chr18 35288379 5410 0.951664 30288155
 368 chr18 4994816 chr18 45075419 5410 0.948706 40075195
 365 chr18 4994816 chr18 73322474 5410 0.951848 68322250
 361 chr18 4994848 chr18 25709114 2592 0.943670 20711674
 364 chr18 4994848 chr18 55172174 5378 0.960673 50171950
 1391 chr18rc 4997185 chr18 13965793 3039 0.911155 8965569
 1784 chr18rc 4997191 chr18 68544967 3033 0.884932 63544743
 1429 chr18rc 4997192 chr18 37655528 3032 0.910290 32655304
 1556 chr18rc 4997195 chr18 70418667 3029 0.910532 65418443
 1594 chr18rc 4997209 chr18 12192377 3015 0.917081 7192153
 1616 chr18rc 4997223 chr18 51814055 2969 0.899630 46813863
 320 chr18 4997248 chr18 20000716 2976 0.950940 15000492
 321 chr18 4997248 chr18 24750625 2976 0.953290 19750401
 53 chr18 4997248 chr18 24981089 2976 0.954970 19980865
 251 chr18 4997248 chr18 37036667 2528 0.955700 32036891
 258 chr18 4997248 chr18 38313315 2976 0.954300 33313091
 259 chr18 4997248 chr18 39102820 2976 0.957330 34102596
 252 chr18 4997248 chr18 39246094 2976 0.953290 34245870
 54 chr18 4997248 chr18 50588795 2816 0.955610 45588731
 261 chr18 4997248 chr18 51842034 2976 0.951280 46841810
 55 chr18 4997248 chr18 54715042 2976 0.953630 49714818
 263 chr18 4997248 chr18 60361613 2976 0.952280 55361389
 56 chr18 4997248 chr18 61315719 2976 0.953290 56315495
 172 chr18 4997312 chr18 40757193 2880 0.948960 35757001
 1570 chr18rc 4997471 chr18 74890847 2753 0.913549 69890623
 173 chr18 4997504 chr18 40791985 2720 0.956250 35791761
 1601 chr18rc 4997515 chr18 25884555 2581 0.914762 20884459
 1588 chr18rc 4997624 chr18 5671224 2600 0.904615 671000
 348 chr18 4997664 chr18 15360556 2560 0.949220 10360332
 681 chr18rc 5671192 chr18 35291192 2632 0.893997 29617368
 697 chr18rc 5671192 chr18 45078232 2632 0.891337 39404408
 671 chr18rc 5671193 chr18 24751001 2631 0.886355 19077177
 954 chr18rc 5671193 chr18 24981465 2631 0.900038 19307641
 856 chr18rc 5671194 chr18 54715418 2630 0.895057 49041594
 692 chr18rc 5671195 chr18 38313691 2629 0.900342 32639867
 1231 chr18rc 5671196 chr18 39103196 2628 0.908676 33429372
 951 chr18rc 5671204 chr18 15360516 2620 0.894656 9686692
 848 chr18rc 5671204 chr18 20001092 2620 0.891985 14327268
 666 chr18rc 5671205 chr18 7959941 2619 0.905307 2286117
 707 chr18rc 5671205 chr18 60361989 2619 0.895380 54688165
 1294 chr18rc 5671206 chr18 39246470 2618 0.899542 33572646
 1340 chr18rc 5671207 chr18 73325287 2617 0.896064 67651463
 853 chr18rc 5671209 chr18 40792105 2615 0.904015 35118281
 702 chr18rc 5671210 chr18 51842410 2614 0.895562 46168586
 1251 chr18rc 5671211 chr18 55174955 2613 0.901263 49501131
 676 chr18rc 5671217 chr18 32677233 2607 0.895282 27003409
 1306 chr18rc 5671231 chr18 61316095 2593 0.910143 55642271
 483 chr18 5671264 chr18 12192417 2560 0.948440 6518593
 484 chr18 5671264 chr18 13965833 2560 0.952730 8292009
 595 chr18 5671264 chr18 22086971 2560 0.946480 16413147
 575 chr18 5671264 chr18 37655568 2560 0.946090 31981744
 485 chr18 5671264 chr18 47758292 2560 0.950780 42084468
 623 chr18 5671264 chr18 68545007 2560 0.943750 62871183
 488 chr18 5671264 chr18 70418707 2560 0.946880 64744883
 486 chr18 5671296 chr18 56856150 2528 0.956090 51182326
 487 chr18 5671296 chr18 68198764 2528 0.954510 62524940
 609 chr18 5671296 chr18 74890919 2528 0.956490 69217095
 1048 chr18rc 5674595 chr18 68201507 3357 0.949360 62523555
 1353 chr18rc 5674603 chr18 47761067 3349 0.943864 42083115
 1038 chr18rc 5674605 chr18 56858893 3347 0.944129 51180941
 71 chr18 5674656 chr18 7956430 3296 0.966320 2278478
 74 chr18 5674656 chr18 35287681 3296 0.974820 29609729
 76 chr18 5674656 chr18 45074721 3296 0.972390 39396769
 78 chr18 5674656 chr18 73321776 3296 0.971780 67643824
 1677 chr18rc 5674837 chr18 57484629 3115 0.908507 51806677
 1739 chr18rc 5674851 chr18 53170467 3101 0.906159 47492515
 1871 chr18rc 5674859 chr18 28818667 3093 0.910443 23140715
 75 chr18 5674912 chr18 37033792 2656 0.958210 31356224
 1743 chr18rc 5674951 chr18 66239783 3001 0.912696 60561831
 435 chr18 5675008 chr18 25708736 2880 0.951040 20030848
 1734 chr18rc 5675048 chr18 33705864 2872 0.900418 28027944
 837 chr18rc 5675086 chr18 22181550 2834 0.915314 16503630
 1732 chr18rc 5675090 chr18 22089746 2862 0.922082 16411794
 72 chr18 5675136 chr18 31799527 2816 0.954190 26121575
 73 chr18 5675136 chr18 32674202 2816 0.961650 26996250
 77 chr18 5675232 chr18 55172020 2720 0.960660 49494068
 833 chr18rc 5675328 chr18 13968608 2624 0.942454 8290656
 1736 chr18rc 5675367 chr18 37658343 2585 0.902515 31980391
 1664 chr18rc 5675386 chr18 30327354 2566 0.926345 24649402
 313 chr18 7390816 chr18 66904647 2688 0.949400 59511143
 1450 chr18rc 7956369 chr18 68198673 6191 0.954288 60236113
 1439 chr18rc 7956377 chr18 47758233 6183 0.953744 39795673
 1444 chr18rc 7956379 chr18 56856059 6181 0.951950 48893499
 12 chr18 7956448 chr18 35287699 6112 0.978400 27325139
 16 chr18 7956448 chr18 45074739 6112 0.975790 37112179
 83 chr18 7956448 chr18 73321794 6112 0.978570 65359234
 1464 chr18rc 7956611 chr18 57484035 3709 0.922890 49523715
 1541 chr18rc 7956625 chr18 53168497 5071 0.922698 45206801
 1676 chr18rc 7956633 chr18 28817337 4423 0.929912 20856281
 80 chr18 7956704 chr18 37033810 5406 0.924158 29071698
 1821 chr18rc 7956725 chr18 66238389 4395 0.924460 58277269
 342 chr18 7956768 chr18 25708722 2880 0.950000 17749074
 1605 chr18rc 7956822 chr18 33705878 2858 0.909727 25746198
 1849 chr18rc 7956860 chr18 22181564 2820 0.919858 14221884
 1402 chr18rc 7956864 chr18 22086880 5728 0.946054 14124288
 79 chr18 7956896 chr18 31799513 4800 0.958750 23837817
 11 chr18 7956928 chr18 32674220 5632 0.970880 24711660
 82 chr18 7957024 chr18 55172038 5568 0.968570 47209446
 1390 chr18rc 7957102 chr18 13965742 5490 0.948816 6003150
 1428 chr18rc 7957141 chr18 37655477 5451 0.930838 29692885
 1416 chr18rc 7957160 chr18 30325960 3960 0.940404 22364840
 294 chr18 7957248 chr18 46631058 3264 0.954960 38670546
 1408 chr18rc 7957272 chr18 25207416 3464 0.920323 17246680
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 219 chr18 39103072 chr18 40791981 2752 0.952030 1686157
 1536 chr18rc 39245650 chr18 53168498 2574 0.902098 13920274
 1044 chr18rc 39245650 chr18 68198674 3438 0.946481 28949586
 1703 chr18rc 39245651 chr18 59501683 2573 0.898562 20253459
 1554 chr18rc 39245657 chr18 70418649 3431 0.936753 31169561
 1433 chr18rc 39245658 chr18 47758202 3462 0.937319 8509082
 1034 chr18rc 39245660 chr18 56856060 3428 0.937865 17606972
 133 chr18 39245696 chr18 45077458 3392 0.967870 5828370
 135 chr18 39245696 chr18 51841636 3392 0.964330 12592548
 223 chr18 39245696 chr18 54714644 3392 0.952540 15465556
 136 chr18 39245696 chr18 55174181 3392 0.958140 15925093
 137 chr18 39245696 chr18 60361215 3424 0.963490 21112095
 138 chr18 39245696 chr18 61315321 3392 0.968750 22066233
 224 chr18 39245696 chr18 73324513 3392 0.969630 34075425
 1780 chr18rc 39245749 chr18 68544981 3307 0.899002 29295925
 1770 chr18rc 39245973 chr18 51814069 3051 0.905277 12565045
 134 chr18 39246016 chr18 50588717 2912 0.951240 11339789
 355 chr18 39246048 chr18 40757083 2976 0.950270 1508059
 1564 chr18rc 39246317 chr18 74890829 2771 0.907615 35641741
 222 chr18 39246336 chr18 40791971 2752 0.950580 1542883
 1889 chr18rc 40131000 chr18 68199544 2728 0.902126 28065816
 1901 chr18rc 40131001 chr18 59501721 2695 0.909091 19368025
 1899 chr18rc 40131007 chr18 70419551 2689 0.906285 30285855
 1888 chr18rc 40131008 chr18 47759136 2688 0.911830 7625440
 1898 chr18rc 40131010 chr18 56856962 2686 0.913254 16723266
 1904 chr18rc 40131032 chr18 53168568 2632 0.904635 13034904
 645 chr18 40131072 chr18 45077324 2624 0.954270 4943628
 641 chr18 40131072 chr18 51841502 2624 0.954270 11707806
 374 chr18 40131072 chr18 54714510 2624 0.954270 14580814
 531 chr18 40131072 chr18 55174047 2624 0.953510 15040351
 642 chr18 40131072 chr18 60361081 2624 0.953890 20227385
 515 chr18 40131072 chr18 61315187 2624 0.953510 21181491
 516 chr18 40131072 chr18 73324379 2624 0.955790 33190683
 1873 chr18rc 40757005 chr18 68198733 3059 0.900621 27438669
 1769 chr18rc 40757008 chr18 51814032 3088 0.903497 11053936
 1639 chr18rc 40757013 chr18 47758293 3051 0.900688 6998229
 1773 chr18rc 40757015 chr18 56856119 3049 0.904559 16096055
 1779 chr18rc 40757040 chr18 68545008 3024 0.902116 27784944
 1641 chr18rc 40757044 chr18 70418708 3020 0.900993 29658644
 356 chr18 40757088 chr18 45077815 2976 0.952620 4317751
 518 chr18 40757088 chr18 51841993 2976 0.949930 11081929
 177 chr18 40757088 chr18 54715001 2976 0.948590 13954937
 508 chr18 40757088 chr18 55174538 2976 0.948920 14414474
 357 chr18 40757088 chr18 60361572 2976 0.949600 19601508
 358 chr18 40757088 chr18 61315678 2976 0.950940 20555614
 519 chr18 40757088 chr18 73324870 2976 0.949260 32564806
 592 chr18 40757152 chr18 50588818 2752 0.950940 9828914
 1577 chr18rc 40757384 chr18 74890888 2680 0.898507 34130824
 176 chr18 40757408 chr18 40792008 2688 0.949030 31912
 1563 chr18rc 40791856 chr18 74890832 2864 0.897346 34096112
 1549 chr18rc 40791925 chr18 68198677 2795 0.907692 27403957
 1768 chr18rc 40791928 chr18 51814040 2760 0.898551 11019352
 1778 chr18rc 40791928 chr18 68544952 2792 0.887536 27750232
 1553 chr18rc 40791932 chr18 70418652 2788 0.909254 29623932
 1528 chr18rc 40791933 chr18 47758237 2787 0.913886 6963517
 1543 chr18rc 40791935 chr18 56856063 2785 0.908438 16061343
 225 chr18 40791968 chr18 45078095 2752 0.952760 4283375
 226 chr18 40791968 chr18 50589034 2592 0.946760 9794474
 227 chr18 40791968 chr18 51842273 2752 0.946580 11047553
 228 chr18 40791968 chr18 55174818 2752 0.950220 14380098
 319 chr18 40791968 chr18 60361852 2752 0.949490 19567132
 229 chr18 40791968 chr18 61315958 2752 0.948760 20521238
 230 chr18 40791968 chr18 73325150 2752 0.949490 32530430
 115 chr18 40792000 chr18 54715313 2720 0.957720 13920593
 375 chr18 41743392 chr18 49158046 2848 0.952250 7411806
 1343 chr18rc 42998612 chr18 49243092 3020 0.905629 6241460
 1893 chr18rc 43264203 chr18 60359755 2581 0.903526 17092971
 1665 chr18rc 43264205 chr18 73323021 2611 0.904634 30056205
 1575 chr18rc 43264209 chr18 55172721 2575 0.903301 11905937
 590 chr18 43264288 chr18 56858416 2496 0.950720 13591632
 335 chr18 44430080 chr18 44436007 3520 0.988070 2407
 336 chr18 44430080 chr18 44441922 3552 0.980290 8290
 337 chr18 44435424 chr18 44441339 4128 0.981350 1787
 602 chr18 44766048 chr18 53171182 2624 0.948550 8402510
 622 chr18 44766048 chr18 57485344 2624 0.948170 12716672
 1043 chr18rc 45074660 chr18 68198692 6172 0.960953 23117860
 1351 chr18rc 45074668 chr18 47758220 6196 0.955455 2677356
 1033 chr18rc 45074670 chr18 56856078 6162 0.953262 11775246
 101 chr18 45074720 chr18 73321775 6144 0.976400 28240911
 1547 chr18rc 45074902 chr18 57484022 3722 0.916443 12405398
 1535 chr18rc 45074916 chr18 53168516 5052 0.918844 8088548
 1705 chr18rc 45075016 chr18 66238376 4408 0.921279 21158952
 100 chr18 45075296 chr18 55172019 5536 0.968030 10091187
 309 chr18 45075552 chr18 46631071 3264 0.951900 1552255
 99 chr18 45075680 chr18 54712866 5184 0.959100 9632002
 840 chr18rc 45075723 chr18 70418635 5141 0.948259 25337771
 51 chr18 45076000 chr18 60359757 4864 0.973680 15278893
 1702 chr18rc 45076453 chr18 59501669 3547 0.904144 14421669
 1683 chr18rc 45077098 chr18 68307498 2614 0.903213 23227786
 50 chr18 45077152 chr18 51841330 3680 0.973370 6760498
 140 chr18 45077152 chr18 61315015 3680 0.977990 16234183
 1777 chr18rc 45077511 chr18 68544967 3321 0.899428 23464135
 1611 chr18rc 45077735 chr18 51814055 3065 0.905710 6733255
 139 chr18 45077792 chr18 50588731 2880 0.961460 5508059
 1562 chr18rc 45078079 chr18 74890815 2785 0.908079 29809951
 1884 chr18rc 46630983 chr18 66238983 3353 0.902475 19604647
 1854 chr18rc 46630987 chr18 47760267 3349 0.902956 1125931
 1856 chr18rc 46630989 chr18 56858093 3347 0.905587 10223757
 1857 chr18rc 46630997 chr18 57484053 3115 0.906581 10849941
 1831 chr18rc 46631011 chr18 53169667 3325 0.905564 6535331
 1858 chr18rc 46631011 chr18 68200707 3325 0.905564 21566371
 311 chr18 46631072 chr18 55172276 3264 0.953130 8537940
 312 chr18 46631072 chr18 73322608 3264 0.953130 26688272
 310 chr18 46631232 chr18 54712899 3104 0.950390 8078563
 1859 chr18rc 46631306 chr18 70420682 3030 0.907591 23786346
 360 chr18 46631552 chr18 60359790 2784 0.952590 13725454
 790 chr18rc 47758222 chr18 54712782 5266 0.924041 6949294
 938 chr18rc 47758233 chr18 60359705 4903 0.961860 12596569
 718 chr18rc 47758235 chr18 73321723 6181 0.963275 25557307
 983 chr18rc 47758238 chr18 51841278 3746 0.951415 4079294
 798 chr18rc 47758239 chr18 55171967 5601 0.944653 7408127
 987 chr18rc 47758259 chr18 61314931 3757 0.954751 13552915
 413 chr18 47758304 chr18 56856130 6112 0.979550 9091714
 377 chr18 47758304 chr18 68198744 6112 0.982490 20434328
 582 chr18 47758304 chr18 68545019 3264 0.947300 20783451
 422 chr18 47758304 chr18 70418719 5056 0.974680 22655359
 468 chr18 47758304 chr18 74890899 2688 0.954990 27129907
 501 chr18 47758336 chr18 51814107 3008 0.952130 4052763
 981 chr18rc 47758407 chr18 50588647 2969 0.914786 2827271
 467 chr18 47759168 chr18 53168568 4992 0.961140 5404408
 552 chr18 47759168 chr18 59501753 3456 0.954570 11739129
 591 chr18 47759424 chr18 68307550 2560 0.950000 20545566
 553 chr18 47759744 chr18 66238460 4320 0.963660 18474396
 421 chr18 47760512 chr18 57484074 3648 0.957510 9719914
 1838 chr18rc 50588649 chr18 56856233 2967 0.917425 6264617
 1839 chr18rc 50588671 chr18 68198847 2945 0.925637 17607231
 1471 chr18rc 50588674 chr18 68545122 2942 0.904147 17953506
 1763 chr18rc 50588678 chr18 70418822 2938 0.922056 19827206
 1887 chr18rc 50588706 chr18 51814210 2878 0.902015 1222626
 141 chr18 50588736 chr18 51841975 2880 0.959720 1250359
 60 chr18 50588736 chr18 54714983 2880 0.959380 4123367
 142 chr18 50588736 chr18 55174520 2880 0.960070 4582904
 143 chr18 50588736 chr18 60361554 2880 0.959380 9769938
 61 chr18 50588736 chr18 61315660 2880 0.961110 10724044
 231 chr18 50588736 chr18 73324852 2880 0.960420 22733236
 1476 chr18rc 50589018 chr18 74891002 2598 0.911855 24299386
 1064 chr18rc 51814036 chr18 60361492 3084 0.897211 8544372
 1304 chr18rc 51814057 chr18 54714921 3063 0.894221 2897801
 1305 chr18rc 51814062 chr18 61315598 3058 0.898954 9498478
 1339 chr18rc 51814070 chr18 73324790 3050 0.904918 21507670
 1337 chr18rc 51814073 chr18 51841913 3047 0.905153 24793
 1329 chr18rc 51814074 chr18 55174458 3046 0.901182 3357338
 502 chr18 51814112 chr18 56856167 3008 0.951460 5039047
 503 chr18 51814112 chr18 68198781 3008 0.951460 16381661
 583 chr18 51814112 chr18 68545056 3008 0.948470 16727936
 504 chr18 51814112 chr18 70418756 3008 0.949470 18601636
 584 chr18 51814112 chr18 74890936 2624 0.951220 23074200
 1804 chr18rc 51841270 chr18 53168502 2890 0.910727 1324342
 1042 chr18rc 51841270 chr18 68198678 3754 0.953117 16353654
 1701 chr18rc 51841271 chr18 59501687 2889 0.905850 7657527
 1682 chr18rc 51841276 chr18 68307484 2628 0.888889 16463580
 1491 chr18rc 51841277 chr18 70418653 3747 0.945290 18573629
 1032 chr18rc 51841280 chr18 56856064 3744 0.945780 5011040
 232 chr18 51841344 chr18 54714352 3680 0.960050 2869328
 144 chr18 51841344 chr18 55173889 3680 0.967120 3328865
 52 chr18 51841344 chr18 60360923 3680 0.972830 8515899
 145 chr18 51841344 chr18 61315029 3680 0.973370 9470005
 233 chr18 51841344 chr18 73324221 3680 0.977720 21479197
 1776 chr18rc 51841689 chr18 68544985 3303 0.901605 16699993
 1785 chr18rc 51842257 chr18 74890833 2767 0.906758 23045809
 937 chr18rc 53168497 chr18 60359697 4047 0.922659 7187153
 943 chr18rc 53168499 chr18 73321971 5069 0.925232 20148403
 933 chr18rc 53168503 chr18 55171959 4745 0.924763 1998711
 854 chr18rc 53168518 chr18 54712806 4346 0.923378 1539942
 1273 chr18rc 53168523 chr18 61314923 2901 0.911410 8143499
 469 chr18 53168576 chr18 56857002 4992 0.962740 3683434
 599 chr18 53168576 chr18 59501761 3456 0.947920 6329729
 471 chr18 53168576 chr18 68199616 4992 0.961340 15026048
 472 chr18 53168576 chr18 70419591 4160 0.961300 17246855
 596 chr18 53168832 chr18 68307558 2528 0.949760 15136198
 571 chr18 53169152 chr18 66238468 4320 0.963430 13064996
 470 chr18 53169920 chr18 57484082 3936 0.956050 4310226
 1259 chr18rc 54712778 chr18 66238378 3830 0.913838 11521770
 822 chr18rc 54712784 chr18 56856080 5232 0.928326 2138064
 1790 chr18rc 54712792 chr18 57484024 3016 0.908820 2768216
 1620 chr18rc 54712806 chr18 68198694 5210 0.928023 13480678
 102 chr18 54712864 chr18 55172401 5184 0.962960 454353
 103 chr18 54712864 chr18 73322733 5184 0.961230 18604685
 1622 chr18rc 54712941 chr18 70418637 5107 0.923830 15700589
 160 chr18 54713184 chr18 60359755 4864 0.957650 5641707
 1700 chr18rc 54713639 chr18 59501671 3545 0.902680 4784487
 826 chr18rc 54714284 chr18 68307500 2612 0.893185 13590604
 62 chr18 54714336 chr18 61315013 3680 0.963040 6596997
 1864 chr18rc 54714729 chr18 68544969 3287 0.897779 13826953
 1869 chr18rc 54715265 chr18 74890849 2751 0.916031 20172833
 1446 chr18rc 55171959 chr18 68198679 5609 0.944375 13021111
 1258 chr18rc 55171963 chr18 66238395 4165 0.929172 11062267
 821 chr18rc 55171969 chr18 56856065 5599 0.944633 1678497
 1546 chr18rc 55171977 chr18 57484009 3383 0.924327 2308649
 104 chr18 55172032 chr18 73322364 5536 0.972000 18144796
 1552 chr18rc 55172446 chr18 70418654 5122 0.931277 15241086
 146 chr18 55172736 chr18 60359770 4832 0.969160 5182202
 1699 chr18rc 55173176 chr18 59501688 3528 0.909864 4324984
 825 chr18rc 55173821 chr18 68307485 2627 0.890369 13131037
 147 chr18 55173856 chr18 61314996 3712 0.962550 6137428
 1470 chr18rc 55174266 chr18 68544954 3302 0.897032 13367386
 1475 chr18rc 55174802 chr18 74890834 2766 0.913594 19713266
 895 chr18rc 56856053 chr18 61314933 3787 0.947452 4455093
 704 chr18rc 56856059 chr18 60359707 4901 0.956744 3498747
 808 chr18rc 56856061 chr18 73321725 6179 0.952581 16459485
 424 chr18 56856064 chr18 70418653 5120 0.966020 13557469
 246 chr18 56856128 chr18 68198742 6112 0.980040 11336502
 585 chr18 56856128 chr18 68545017 3264 0.946380 11685625
 473 chr18 56856128 chr18 74890897 2688 0.955730 18032081
 573 chr18 56856992 chr18 59501751 3456 0.956020 2641303
 109 chr18 56857248 chr18 68307548 2560 0.950390 11447740
 341 chr18 56857568 chr18 66238458 4320 0.965050 9376570
 423 chr18 56858368 chr18 57484104 3616 0.966540 622120
 1318 chr18rc 57484035 chr18 60359715 2653 0.926875 2873027
 1279 chr18rc 57484037 chr18 73321957 3707 0.924197 15834213
 562 chr18 57484096 chr18 66239250 3552 0.957770 8751602
 425 chr18 57484096 chr18 68200974 3648 0.959430 10713230
 426 chr18 57484096 chr18 70420949 2816 0.954900 12934037
 639 chr18 59501280 chr18 61678965 2624 0.951600 2175061
 1183 chr18rc 59501676 chr18 61314924 2932 0.899386 1810316
 936 chr18rc 59501682 chr18 60360210 3534 0.910583 854994
 942 chr18rc 59501684 chr18 73323508 3532 0.912231 13818292
 555 chr18 59501760 chr18 68199615 3456 0.955730 8694399
 556 chr18 59501760 chr18 70419590 3456 0.951680 10914374
 636 chr18 59502016 chr18 68307557 2528 0.946990 8803013
 554 chr18 59502336 chr18 66238467 2880 0.951390 6733251
 1041 chr18rc 60359697 chr18 68198673 4911 0.961515 7834065
 1806 chr18rc 60359701 chr18 66238389 3467 0.924142 5875221
 839 chr18rc 60359704 chr18 70418584 4968 0.941224 10053912
 161 chr18 60359776 chr18 73323074 4832 0.978480 12958466
 1807 chr18rc 60360855 chr18 68307479 2633 0.898595 7943991
 148 chr18 60360896 chr18 61315002 3712 0.974140 950394
 1863 chr18rc 60361268 chr18 68544980 3308 0.894498 8180404
 1561 chr18rc 60361836 chr18 74890828 2772 0.893939 14526220
 1040 chr18rc 61314923 chr18 68198699 3765 0.957238 6880011
 838 chr18rc 61314930 chr18 70418674 3758 0.950239 9099986
 1681 chr18rc 61314961 chr18 68307505 2607 0.898734 6989937
 179 chr18 61315008 chr18 73324200 3680 0.979620 12005512
 1775 chr18rc 61315374 chr18 68544974 3314 0.901328 7226286
 1560 chr18rc 61315942 chr18 74890854 2746 0.915149 13572166
 807 chr18rc 66238391 chr18 73322071 4393 0.931254 7079287
 557 chr18 66238464 chr18 68200188 4320 0.964350 1957404
 558 chr18 66238464 chr18 70420163 3584 0.960380 4178115
 806 chr18rc 68198675 chr18 73321715 6189 0.964776 5116851
 621 chr18 68198752 chr18 68545027 3232 0.954210 343043
 427 chr18 68198752 chr18 70418727 5024 0.979500 2214951
 474 chr18 68198752 chr18 74890907 2688 0.956100 6689467
 527 chr18 68199872 chr18 68307558 2528 0.955700 105158
 1338 chr18rc 68307481 chr18 73324153 2631 0.899658 5014041
 528 chr18 68307520 chr18 70419809 2592 0.940200 2109697
 948 chr18rc 68544982 chr18 73324566 3306 0.901996 4776278
 624 chr18 68545024 chr18 70418724 3232 0.950500 1870468
 428 chr18 68545024 chr18 74890904 2688 0.947920 6343192
 805 chr18rc 70418650 chr18 73322778 5126 0.951034 2899002
 475 chr18 70418720 chr18 74890900 2688 0.956470 4469492
 1559 chr18rc 73325134 chr18 74890830 2770 0.911552 1562926

 Total bases in ABCC Duplications =344418, Total Length of Chromosome (including N's) = 77753510

Statistics for Gene Analysis: note conditions
 Only genes that are less than 5,000,000 bases in transcription length are included
 293 genes match this criteria out of 297 total genes in file
 Only Duplications that are greater than 5,000 bases in length 
 and less than 10,500,000 bases between duplications are included
 28 duplications match this criteria out of 1238 total duplications
 163 genes out of a total of 293 may be involved in deletions
 Some genes have multiple entries in the gene files. Duplicate names have been condensed into a single entry.
 142 unique gene names out of a total of 272 may be involved in deletions
 List of 142 unique genes that may be involved in deletions along with duplication ID (if more than one only 1 given)
FECH 102
LAMA3 1722
NPC1 1722
MC2R 1390
RPL17 99
CIDEA 1390
CYB5 805
GNAL 1390
GRP 821
ME2 413
PIK3C3 410
MAPK4 413
PTPRM 1390
RBBP8 1722
RIT2 410
TCF4 413
ZFP161 370
VAPA 1390
RNMT 1390
NAPG 1390
ATP5A1 410
RAB27B 413
C18orf1 1390
NARS 102
TXNL 413
ONECUT2 102
PPP4R1 1390
DCC 413
GATA6 395
MADH4 413
ROCK1 395
LMAN1 821
ATP8B1 821
SDCCAG33 805
MADH2 99
MADH7 99
MC5R 1390
LIPG 99
ACAA2 99
HFL-EDDG1 1390
ZNF271 1361
RALBP1 1390
AFG3L2 1390
RAB31 1390
SNRPD1 395
ZNF24 1361
SLC14A2 410
POLI 413
KIAA0987 370
LIV-1 1361
SIAT8E 410
MIC1 1722
RAX 821
HSPC154 805
IMPA2 1390
CGBP 99
KIAA0427 99
KIAA0874 1390
NEDD4L 821
DKFZP586M1523 1361
SETBP1 410
MBD2 413
MBD1 99
SLC14A1 410
SIAT8C 102
HSPC039 410
TCEB3L 410
LOC51320 413
FLJ20071 99
ZNF407 805
HMCS 1361
P15RS 1361
FLJ10697 821
CN2 805
STATIP1 1361
IMPACT 1722
ELAC1 413
BRUNOL4 1361
HCCA3 1390
CHMP1.5 1390
GALNT1 1361
TWSG1 1390
SYT4 410
NDUFV2 1390
HRH4 1722
FLJ23403 1390
CTAGE-1 395
MPPE1 1390
PSTPIP2 410
FLJ12542 1390
FLJ13687 395
FLJ11996 1390
KIAA1695 1361
SE57-1 413
FLJ10312 370
SEC13L 1390
PNAS-131 1361
B29 413
DKFZP564D1378 410
FLJ10352 1390
TXNDC2 1390
ZNF397 1361
HEIL1 99
TUBB-5 1390
CPGL2 805
MGC11386 1722
LOC90701 821
WDR7 413
HAK 821
PTPN2 1390
OSBPL1A 1722
ABHD3 395
LOC91768 1722
LOC115106 410
LOC147632 805
STARD6 413
FLJ32670 410
FLJ32743 99
MGC12909 410
MGC10200 413
LOC162655 395
TCEB3L2 410
ZNF396 1361
SUDD 1722
MGC24180 1390
FLJ31338 1390
FLJ34218 410
MGC17515 370
MGC39671 805
APCDD1 1390
NETO1 427
FLJ33761 1722
CABYR 1722
CTAGE-2 395
MIZ1 410
FLJ35936 370
LOC147463 1722
MGC33382 413
FLJ39106 413
MALT1 821
MGC33608 413
MGC45594 805