* A list of 363 Fur binding clusters in Escherichia coli
* detected by the 24-site M9 model
* 2006 Nov 1
*
* Supplementary Material for
*
* Discovery of Fur binding site clusters in Escherichia coli
* by information theory models
*
* Zehua Chen, Karen A. Lewis, Ryan K. Shultzaberger, Ilya G. Lyakhov,
* Ming Zheng, Bernard Doan, Gisela Storz and Thomas D. Schneider
*
* Contact:
*
* Dr. Thomas D. Schneider
* National Institutes of Health
* National Cancer Institute
* Center for Cancer Research Nanobiology Program
* Molecular Information Theory Group
* Frederick, Maryland  21702-1201
* toms@ncifcrf.gov
* permanent email: toms@alum.mit.edu (use only if first address fails)
* http://www.ccrnp.ncifcrf.gov/~toms/
*
* Each of these clusters contains at least one site higher than 10.0
* bits (the lowest information of a site in the model is 10.1 bits).
*
* Coordinates are in bases on
* GenBank Accesssion number: NC_000913
*
* Note:
* intergene means that the Fur clusters are in intergenic regions,
* insidegene means that the Fur clusters are in gene coding regions,
* overlap means that the Fur clusters overlap gene coding regions.
*
*=========================================================
* Number      Coordinates      Cluster     Location
* of sites   From       To     Length      Relative
* (Ri > 0)                      (bp)       To Genes
*--------------------------------------------------------
     7      41980      42020     41       intergene
     3      59147      59171     25      insidegene
     2      82467      82491     25      insidegene
     2     113211     113255     45         overlap
     1     125901     125919     19      insidegene
     2     127682     127707     26       intergene
     7     130297     130345     49      insidegene
     3     155390     155414     25      insidegene
     3     167424     167454     31       intergene
     1     179136     179154     19         overlap
     1     189581     189599     19       intergene
     4     238843     238892     50      insidegene
     5     258298     258334     37      insidegene
     5     289733     289782     50       intergene
     1     292489     292507     19      insidegene
     1     295856     295874     19      insidegene
     1     312290     312308     19       intergene
     2     313178     313202     25       intergene
     1     316839     316857     19       intergene
     4     331040     331100     61       intergene
     4     331886     331913     28      insidegene
     4     333718     333753     36         overlap
     2     334497     334521     25         overlap
     8     343522     343580     59      insidegene
     1     376821     376839     19      insidegene
     2     403652     403676     25      insidegene
     1     404845     404863     19      insidegene
     4     451065     451104     40       intergene
     3     490048     490072     25       intergene
     1     490114     490132     19      insidegene
     2     505029     505073     45      insidegene
     1     515647     515665     19      insidegene
    11     527887     527960     74      insidegene
     3     535582     535606     25      insidegene
     4     558193     558238     46         overlap
     3     561802     561832     31      insidegene
    10     563041     563090     50         overlap
     1     570115     570133     19         overlap
     4     571118     571167     50      insidegene
     5     578185     578224     40       intergene
     4     579809     579836     28       intergene
     2     582464     582488     25       intergene
     8     582530     582637    108       intergene
     8     582766     582862     97       intergene
     2     583649     583695     47         overlap
     4     611880     611916     37       intergene
     2     617543     617567     25      insidegene
     4     621422     621458     37       intergene
     2     623942     623966     25       intergene
     4     624057     624093     37       intergene
     3     675759     675810     52         overlap
     2     676522     676567     46      insidegene
     3     678149     678179     31      insidegene
     2     709931     709955     25       intergene
     2     732998     733020     23         overlap
     3     748899     748937     39         overlap
     3     751438     751462     25         overlap
     1     764577     764595     19      insidegene
     5     786838     786868     31       intergene
     4     840850     840886     37       intergene
     3     848287     848311     25       intergene
     4     872505     872532     28      insidegene
     1     889959     889977     19         overlap
     1     902194     902212     19         overlap
     6     925265     925298     34       intergene
     4     953830     953864     35       intergene
     7     953936     954002     67       intergene
     8     997610     997666     57         overlap
     2    1014179    1014200     22      insidegene
     4    1020276    1020336     61       intergene
     3    1027024    1027069     46       intergene
     2    1047147    1047168     22      insidegene
     4    1049980    1050011     32       intergene
     1    1055650    1055668     19      insidegene
     2    1080504    1080538     35       intergene
     1    1092113    1092131     19      insidegene
     2    1092362    1092383     22      insidegene
     1    1092686    1092704     19      insidegene
     3    1107562    1107589     28      insidegene
     5    1118343    1118382     40       intergene
     5    1160843    1160895     53       intergene
     3    1180642    1180669     28      insidegene
     1    1194235    1194253     19       intergene
     2    1198185    1198209     25      insidegene
     3    1210477    1210516     40       intergene
     6    1211516    1211574     59       intergene
     5    1215724    1215756     33      insidegene
     5    1222324    1222372     49       intergene
     2    1255633    1255657     25       intergene
     1    1262564    1262582     19      insidegene
     1    1297702    1297720     19       intergene
     2    1298958    1298982     25       intergene
     3    1309044    1309072     29       intergene
     1    1311289    1311307     19      insidegene
     3    1314109    1314153     45       intergene
     1    1321089    1321107     19         overlap
     1    1325016    1325034     19      insidegene
     6    1333472    1333512     41       intergene
     1    1393822    1393840     19      insidegene
     2    1399149    1399183     35      insidegene
     3    1416245    1416272     28         overlap
     3    1416754    1416784     31      insidegene
     7    1431711    1431772     62       intergene
     3    1432249    1432288     40         overlap
     5    1435095    1435128     34       intergene
     4    1463680    1463707     28       intergene
     1    1481750    1481768     19      insidegene
     2    1486189    1486214     26       intergene
     1    1497165    1497183     19      insidegene
     1    1517306    1517324     19      insidegene
     2    1517699    1517723     25      insidegene
     1    1520370    1520388     19      insidegene
     3    1521222    1521249     28       intergene
     5    1524070    1524100     31       intergene
     1    1528018    1528036     19      insidegene
     9    1528332    1528393     62      insidegene
     2    1542048    1542072     25      insidegene
     5    1542473    1542509     37      insidegene
     7    1544138    1544196     59       intergene
     1    1552892    1552910     19      insidegene
     2    1557785    1557809     25      insidegene
     4    1577247    1577274     28      insidegene
     2    1577349    1577373     25         overlap
     1    1577785    1577803     19      insidegene
     3    1589579    1589606     28      insidegene
     3    1596164    1596188     25       intergene
     6    1596349    1596389     41       intergene
     3    1631056    1631095     40         overlap
     7    1631572    1631633     62       intergene
     3    1634615    1634639     25       intergene
     4    1635527    1635573     47       intergene
     3    1636321    1636355     35       intergene
     1    1640231    1640249     19       intergene
     3    1651906    1651946     41         overlap
     2    1653825    1653849     25         overlap
     2    1654767    1654791     25         overlap
     3    1671514    1671563     50         overlap
     2    1672504    1672528     25      insidegene
     3    1687857    1687884     28         overlap
     2    1690656    1690680     25      insidegene
     4    1732338    1732380     43       intergene
     7    1752669    1752771    103       intergene
     3    1762448    1762478     31       intergene
     3    1762567    1762608     42       intergene
     2    1762629    1762663     35       intergene
     2    1776815    1776836     22      insidegene
    10    1787587    1787639     53         overlap
     3    1790002    1790032     31      insidegene
     1    1796552    1796570     19      insidegene
     1    1800285    1800303     19      insidegene
     1    1827892    1827910     19      insidegene
     5    1830017    1830066     50       intergene
     3    1875536    1875560     25         overlap
     1    1876796    1876814     19       intergene
     2    1886636    1886660     25      insidegene
     2    1901240    1901264     25      insidegene
     1    1902980    1902998     19      insidegene
     2    1903397    1903421     25       intergene
     4    1906147    1906180     34       intergene
     4    1914243    1914270     28       intergene
     4    1976296    1976323     28       intergene
     2    1977438    1977462     25       intergene
     4    1984678    1984722     45       intergene
     1    1986100    1986118     19       intergene
     3    1993678    1993721     44       intergene
    11    1994873    1994947     75       intergene
     4    2000925    2000955     31      insidegene
     3    2034563    2034593     31      insidegene
     2    2035100    2035124     25      insidegene
     3    2039669    2039693     25      insidegene
     4    2042860    2042904     45       intergene
     3    2055706    2055730     25       intergene
     3    2055987    2056011     25       intergene
    12    2066544    2066638     95       intergene
     1    2071666    2071684     19      insidegene
     2    2101939    2101978     40      insidegene
     2    2105807    2105838     32      insidegene
     2    2113107    2113131     25      insidegene
     3    2135666    2135693     28       intergene
     4    2166286    2166313     28      insidegene
     4    2183917    2183947     31         overlap
     1    2186607    2186625     19      insidegene
     2    2195866    2195890     25       intergene
     1    2199993    2200011     19      insidegene
     2    2202363    2202387     25       intergene
     3    2231880    2231904     25       intergene
     2    2241782    2241806     25       intergene
     3    2244965    2244995     31       intergene
     1    2254032    2254050     19         overlap
     2    2288485    2288509     25       intergene
     5    2306693    2306723     31         overlap
     4    2341621    2341670     50      insidegene
     5    2362463    2362493     31       intergene
     1    2367596    2367614     19      insidegene
     1    2372117    2372135     19      insidegene
     4    2381860    2381900     41      insidegene
    10    2383796    2383911    116         overlap
     2    2399560    2399584     25         overlap
     1    2436379    2436397     19      insidegene
     1    2449080    2449098     19         overlap
     1    2451703    2451721     19      insidegene
     2    2454123    2454151     29       intergene
     2    2460970    2461011     42       intergene
     8    2462036    2462105     70         overlap
     3    2462266    2462294     29         overlap
     1    2466334    2466352     19      insidegene
     2    2467593    2467617     25      insidegene
     1    2468122    2468140     19      insidegene
     2    2488167    2488209     43         overlap
     2    2510775    2510799     25       intergene
     3    2584122    2584146     25      insidegene
     3    2599087    2599111     25       intergene
     4    2626664    2626716     53      insidegene
     1    2640942    2640960     19       intergene
     2    2651516    2651540     25       intergene
     2    2651838    2651862     25       intergene
     1    2663281    2663299     19       intergene
     2    2666171    2666202     32      insidegene
     2    2673795    2673817     23       intergene
     2    2716472    2716496     25      insidegene
     1    2717080    2717098     19      insidegene
     1    2749862    2749880     19      insidegene
     5    2757984    2758033     50      insidegene
     5    2758380    2758433     54         overlap
     3    2758901    2758938     38      insidegene
     5    2771487    2771548     62      insidegene
     3    2771858    2771891     34      insidegene
     6    2772416    2772462     47      insidegene
     1    2778196    2778214     19      insidegene
     2    2781032    2781056     25       intergene
     3    2782955    2782985     31      insidegene
     5    2783213    2783278     66         overlap
     4    2783867    2783912     46      insidegene
     8    2784021    2784116     96       intergene
     5    2786044    2786099     56      insidegene
     2    2792186    2792214     29       intergene
     4    2798729    2798769     41         overlap
     4    2823740    2823788     49       intergene
     4    2830332    2830406     75       intergene
    10    2882370    2882450     81       intergene
     2    2898757    2898781     25      insidegene
     2    2902645    2902669     25       intergene
     1    2903663    2903681     19       intergene
     7    2922620    2922682     63       intergene
     2    2967247    2967268     22       intergene
     1    2975389    2975407     19      insidegene
     7    2980392    2980466     75       intergene
     1    2984273    2984291     19      insidegene
     1    2986360    2986378     19       intergene
     2    2990857    2990881     25      insidegene
     6    2993455    2993497     43      insidegene
     9    3013800    3013907    108       intergene
     1    3064937    3064955     19      insidegene
     3    3122230    3122272     43         overlap
     1    3135791    3135809     19      insidegene
     1    3143896    3143914     19      insidegene
     3    3150067    3150097     31      insidegene
     1    3156648    3156666     19         overlap
     5    3180501    3180531     31       intergene
     9    3183317    3183438    122         overlap
     8    3184048    3184110     63       intergene
     2    3202236    3202257     22         overlap
     8    3214502    3214607    106         overlap
     1    3214719    3214737     19       intergene
     2    3217363    3217391     29       intergene
     2    3225335    3225356     22      insidegene
     6    3251320    3251351     32         overlap
     1    3258115    3258133     19         overlap
     7    3266389    3266426     38         overlap
     2    3270756    3270792     37         overlap
     4    3272852    3272879     28      insidegene
     6    3272912    3272997     86         overlap
     8    3273039    3273103     65       intergene
     1    3276831    3276849     19       intergene
     2    3281918    3281942     25      insidegene
     5    3285252    3285328     77       intergene
     5    3319658    3319692     35       intergene
     2    3319776    3319800     25       intergene
     1    3328778    3328796     19      insidegene
     1    3332930    3332948     19         overlap
     1    3357223    3357241     19      insidegene
     1    3361720    3361738     19      insidegene
     3    3382535    3382557     23       intergene
     3    3410984    3411008     25      insidegene
     2    3434536    3434557     22         overlap
     6    3453656    3453717     62      insidegene
     1    3460936    3460954     19         overlap
     3    3465038    3465068     31       intergene
     2    3502785    3502809     25         overlap
     1    3537997    3538015     19       intergene
     4    3538044    3538092     49       intergene
     4    3579039    3579069     31       intergene
     8    3582757    3582797     41         overlap
     1    3600759    3600777     19         overlap
     3    3602998    3603040     43         overlap
     3    3607791    3607821     31      insidegene
     5    3630269    3630313     45      insidegene
     2    3631096    3631126     31      insidegene
     3    3632555    3632579     25       intergene
     1    3634161    3634179     19       intergene
     1    3637907    3637925     19       intergene
     6    3651729    3651784     56       intergene
     4    3652617    3652644     28       intergene
     2    3694713    3694734     22      insidegene
     4    3694934    3694965     32      insidegene
     5    3718355    3718397     43       intergene
     1    3725252    3725270     19      insidegene
     8    3755886    3755968     83       intergene
     9    3767802    3767920    119       intergene
     3    3787976    3788000     25      insidegene
     1    3792277    3792295     19      insidegene
     2    3795420    3795442     23      insidegene
     3    3796694    3796739     46      insidegene
     5    3797499    3797529     31      insidegene
     3    3799380    3799407     28      insidegene
     4    3806295    3806362     68       intergene
     1    3833233    3833251     19      insidegene
     4    3851902    3851932     31       intergene
     1    3904686    3904704     19       intergene
     1    3925177    3925195     19         overlap
     2    4000652    4000686     35      insidegene
     5    4001112    4001170     59      insidegene
     1    4059000    4059018     19      insidegene
     2    4067356    4067389     34       intergene
     1    4077085    4077103     19       intergene
     3    4098731    4098761     31       intergene
     3    4212132    4212178     47         overlap
     2    4221673    4221697     25       intergene
     6    4233743    4233814     72       intergene
     1    4249341    4249359     19      insidegene
     4    4249637    4249671     35      insidegene
     6    4249814    4249884     71      insidegene
     6    4258162    4258197     36       intergene
     2    4266706    4266730     25       intergene
     2    4266745    4266769     25       intergene
     4    4273318    4273356     39       intergene
     5    4292219    4292296     78       intergene
     2    4295131    4295155     25         overlap
     1    4314143    4314161     19      insidegene
     1    4331956    4331974     19         overlap
     5    4338621    4338692     72       intergene
     3    4347299    4347323     25       intergene
     1    4349208    4349226     19      insidegene
     6    4425498    4425532     35       intergene
     4    4435624    4435660     37       intergene
     1    4463121    4463139     19      insidegene
     5    4474999    4475059     61      insidegene
     1    4484127    4484145     19       intergene
     2    4484234    4484258     25         overlap
     1    4502173    4502191     19      insidegene
     2    4514764    4514788     25         overlap
     7    4516294    4516352     59       intergene
     1    4520026    4520044     19         overlap
     3    4533640    4533664     25      insidegene
     5    4538702    4538765     64       intergene
    14    4539636    4539777    142       intergene
     3    4540798    4540832     35       intergene
     3    4554773    4554814     42       intergene
     2    4570216    4570240     25       intergene
     2    4601059    4601083     25       intergene
     4    4603699    4603733     35       intergene
     4    4603764    4603811     48       intergene
     2    4604030    4604054     25       intergene
*========================================================