BLASTP 2.0.8 [Jan-05-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= YDR021W FAL1, Chr IV from 486799-487998
         (399 letters)

Database: nr
           361,503 sequences; 110,384,460 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|2500524|sp|Q12099|FAL1_YEAST PROBABLE ATP-DEPENDENT RNA HELI...   755  0.0
gi|1352438|sp|Q10055|IF4N_SCHPO EUKARYOTIC INITIATION FACTOR 4A...   511  e-144
gi|1170507|sp|P41380|IF43_NICPL EUKARYOTIC INITIATION FACTOR 4A...   491  e-138
gi|2104219|gnl|PID|d1005415 (D21853) KIAA0111 [Homo sapiens]         486  e-136
gi|729821|sp|P38919|IF4N_HUMAN EUKARYOTIC INITIATION FACTOR 4A-...   485  e-136
gi|2443810 (AF020432) eukaryotic translation initiation factor ...   483  e-136
gi|2773184 (AF039720) similar to the "DEAD" box family of helic...   482  e-135
gi|3775985|emb|CAA09195| (AJ010456) RNA helicase [Arabidopsis t...   476  e-133
gi|1708418|sp|P47943|IF4A_SCHPO EUKARYOTIC INITIATION FACTOR 4A...   474  e-133
gi|90965|pir||S00986 translation initiation factor eIF-4A I - m...   463  e-130
gi|90964|pir||JS0039 translation initiation factor eIF-4A - mou...   463  e-130
gi|417180|sp|P04765|IF41_HUMAN EUKARYOTIC INITIATION FACTOR 4A-...   463  e-129
gi|72888|pir||FIMS4A translation initiation factor eIF-4A - mou...   463  e-129
gi|266336|sp|P29562|IF41_RABIT EUKARYOTIC INITIATION FACTOR 4A-...   463  e-129
gi|50815|emb|CAA26843| (X03039) put. altern. eIF-4A (aa 1-370) ...   462  e-129
gi|2507330|sp|P10630|IF42_MOUSE EUKARYOTIC INITIATION FACTOR 4A...   462  e-129
gi|673433|emb|CAA40268| (X56953) protein synthesis initiation f...   462  e-129
gi|2500513|sp|Q14240|IF42_HUMAN EUKARYOTIC INITIATION FACTOR 4A...   460  e-129
gi|2370591|emb|CAA73167| (Y12590) translation initiation factor...   458  e-128
gi|124217|sp|P27639|IF4A_CAEEL EUKARYOTIC INITIATION FACTOR 4A ...   453  e-127
gi|50823|emb|CAA31025| (X12507) initiation factor 4AII (AA 1 - ...   453  e-127
gi|462401|sp|Q02748|IF4A_DROME EUKARYOTIC INITIATION FACTOR 4A ...   451  e-126
gi|2500523|sp|P87206|IF4A_CANAL EUKARYOTIC INITIATION FACTOR 4A...   450  e-126
gi|2370593|emb|CAA73168| (Y12591) translation initiation factor...   450  e-125
gi|3097266|emb|CAA76677| (Y17186) translation initiation factor...   449  e-125
gi|446778|prf||1912301A initiation factor eIF-4A [Drosophila me...   448  e-125
gi|1170511|sp|P41382|IF4U_TOBAC EUKARYOTIC INITIATION FACTOR 4A...   447  e-125
gi|2500517|sp|Q40471|IF49_TOBAC EUKARYOTIC INITIATION FACTOR 4A...   446  e-125
gi|2500518|sp|Q40465|IF4V_TOBAC EUKARYOTIC INITIATION FACTOR 4A...   446  e-124
gi|2119938|pir||S52023 translation initiation factor eIF-4A.14 ...   446  e-124
gi|2119933|pir||S52018 translation initiation factor eIF-4A.11 ...   445  e-124
gi|2341061 (U73459) translational initiation factor eIF-4A [Zea...   445  e-124
gi|2500520|sp|Q40467|IF4Y_TOBAC EUKARYOTIC INITIATION FACTOR 4A...   444  e-124
gi|2500522|sp|Q41741|IF4A_MAIZE EUKARYOTIC INITIATION FACTOR 4A...   444  e-124
gi|2119934|pir||S52019 translation initiation factor eIF-4A.7 -...   444  e-124
gi|2119932|pir||S52017 translation initiation factor eIF-4A.9 -...   444  e-124
gi|1170506|sp|P41379|IF42_NICPL EUKARYOTIC INITIATION FACTOR 4A...   444  e-124
gi|2286151 (AF007580) translation initiation factor [Zea mays]       443  e-124
gi|2500516|sp|Q40470|IF47_TOBAC EUKARYOTIC INITIATION FACTOR 4A...   443  e-124
gi|2119935|pir||S52020 translation initiation factor eIF-4A.15 ...   443  e-123
gi|1170509|sp|P41378|IF4A_WHEAT EUKARYOTIC INITIATION FACTOR 4A...   442  e-123
gi|1170503|sp|P41376|IF41_ARATH EUKARYOTIC INITIATION FACTOR 4A...   442  e-123
gi|2500521|sp|Q40468|IF4Z_TOBAC EUKARYOTIC INITIATION FACTOR 4A...   441  e-123
gi|3776021|emb|CAA09211| (AJ010472) RNA helicase [Arabidopsis t...   441  e-123
gi|1170508|sp|P41381|IF48_TOBAC EUKARYOTIC INITIATION FACTOR 4A...   437  e-122
gi|547712|sp|P35683|IF4A_ORYSA EUKARYOTIC INITIATION FACTOR 4A ...   436  e-121
gi|1170505|sp|P41377|IF42_ARATH EUKARYOTIC INITIATION FACTOR 4A...   434  e-121
gi|124218|sp|P10081|IF4A_YEAST EUKARYOTIC INITIATION FACTOR 4A ...   423  e-118
gi|2150025 (AF001211) translation initiation factor [Cryptospor...   420  e-117
gi|1688326 (U78759) IfdA [Dictyostelium discoideum]                  411  e-114
gi|3002483 (AE001274) EIF-4A; L3162.6 [Leishmania major] >gi|30...   409  e-113
gi|2500514|sp|Q25225|IF4A_LEIBR PROBABLE EUKARYOTIC INITIATION ...   406  e-112
gi|2119937|pir||S52022 translation initiation factor eIF-4A.13 ...   374  e-103
gi|2500519|sp|Q40466|IF4X_TOBAC EUKARYOTIC INITIATION FACTOR 4A...   372  e-102
gi|2119936|pir||S52021 translation initiation factor eIF-4A.6 -...   328  3e-89
gi|2500515|sp|Q40469|IF46_TOBAC EUKARYOTIC INITIATION FACTOR 4A...   328  4e-89
gi|532817 (U13876) highly similar to eukaryotic initiation fact...   324  8e-88
gi|2136088|pir||I52691 RCK - human >gi|458727|gnl|PID|d1005007 ...   291  4e-78
gi|129376|sp|P26196|DDX6_HUMAN PROBABLE ATP-DEPENDENT RNA HELIC...   291  4e-78
gi|1709532|sp|P54823|DDX6_MOUSE PROBABLE ATP-DEPENDENT RNA HELI...   291  4e-78
gi|1709533|sp|P54824|DDX6_XENLA ATP-DEPENDENT RNA HELICASE P54 ...   288  4e-77
gi|2745894|gb|AAB94769| (AF038995) putative RNA helicase RCK [M...   286  2e-76
gi|126938|sp|P23128|ME31_DROME PUTATIVE ATP-DEPENDENT RNA HELIC...   280  8e-75
gi|3776001|emb|CAA09203| (AJ010464) RNA helicase [Arabidopsis t...   280  1e-74
gi|1174456|sp|Q09181|ST13_SCHPO PUTATIVE ATP-DEPENDENT RNA HELI...   280  1e-74
gi|103314|pir||A39157 probable helicase (EC 3.6.1.-) - fruit fl...   280  1e-74
gi|3386613 (AC004665) putative ATP-dependent RNA helicase [Arab...   279  2e-74
gi|3775993|emb|CAA09199| (AJ010460) RNA helicase [Arabidopsis t...   278  5e-74
gi|1175426|sp|Q09747|YB66_SCHPO PUTATIVE ATP-DEPENDENT RNA HELI...   274  8e-73
gi|729329|sp|P39517|DHH1_YEAST PUTATIVE ATP-DEPENDENT RNA HELIC...   272  3e-72
gi|407992 (L25125) RNA helicase [Mus musculus]                       268  6e-71
gi|3108197 (AF005239) DEAD-box helicase [Drosophila melanogaster]    261  8e-69
gi|1177010|sp|P42305|YXIN_BACSU PROBABLE RNA HELICASE IN WAPA-L...   257  7e-68
gi|1708152|sp|P20449|DBP5_YEAST PROBABLE ATP-DEPENDENT RNA HELI...   257  9e-68
gi|1881268|dbj||AB001488_42 (AB001488) ATP-DEPENDENT RNA HELICA...   257  9e-68
gi|3776005|emb|CAA09205| (AJ010466) RNA helicase [Arabidopsis t...   257  9e-68
gi|3132829 (AF063447) nuclear RNA helicase [Rattus norvegicus]       256  1e-67
gi|2500529|sp|Q13838|HE47_HUMAN PROBABLE ATP-DEPENDENT RNA HELI...   256  2e-67
gi|4235116 (AF118128) nuclear RNA helicase Bat1 [Mus musculus]       256  2e-67
gi|1001719|gnl|PID|d1011207 (D64004) ATP-dependent RNA helicase...   254  6e-67
gi|3047117 (AF058919) similar to ATP-dependent RNA helicases [A...   254  8e-67
gi|2500530|sp|Q29024|HE47_PIG PROBABLE ATP-DEPENDENT RNA HELICA...   253  2e-66
gi|1905998 (U90426) nuclear RNA helicase [Homo sapiens]              252  3e-66
gi|2500531|sp|Q63413|HE47_RAT PROBABLE ATP-DEPENDENT RNA HELICA...   252  3e-66
gi|2500532|sp|Q27268|HE47_DROME PROBABLE ATP-DEPENDENT RNA HELI...   247  7e-65
gi|1706338|sp|Q11039|DEAD_MYCTU ATP-DEPENDENT RNA HELICASE DEAD...   247  1e-64
gi|548730|sp|P25888|RHLE_ECOLI PUTATIVE ATP-DEPENDENT RNA HELIC...   245  5e-64
gi|2648271 (AE000949) ATP-dependent RNA helicase, DEAD-family (...   245  5e-64
gi|2313340 (AE000544) ATP-dependent RNA helicase, DEAD-box fami...   244  6e-64
gi|3845186 (AE001395) eIF-4A-like DEAD family RNA helicase [Pla...   242  3e-63
gi|4154758 (AE001461) ATP-DEPENDENT RNA HELICASE DEAD [Helicoba...   242  3e-63
gi|2408027|emb|CAB16225| (Z99162) atp-dependent rna helicase [S...   241  6e-63
gi|2500540|sp|Q58083|Y669_METJA PUTATIVE ATP-DEPENDENT RNA HELI...   240  1e-62
gi|2621248 (AE000807) ATP-dependent RNA helicase, eIF-4A family...   240  1e-62
gi|539961|pir||A42811 translation initiation factor eIF-4A homo...   240  2e-62
gi|2500534|sp|Q07478|HE47_YEAST PROBABLE ATP-DEPENDENT RNA HELI...   239  2e-62
gi|2190968 (AF002677) DEAD-box RNA helicase [Dictyostelium disc...   239  3e-62
gi|1169261|sp|P44586|DEAD_HAEIN ATP-DEPENDENT RNA HELICASE DEAD...   238  5e-62
gi|96321|pir||A42357 probable ATP-dependent RNA helicase deaD -...   237  8e-62
gi|461923|sp|P23304|DEAD_ECOLI ATP-DEPENDENT RNA HELICASE DEAD       237  8e-62
gi|606102 (U18997) two frameshifts relative to ECODEAD [Escheri...   237  8e-62
gi|2500533|sp|Q18212|HE47_CAEEL PROBABLE ATP-DEPENDENT RNA HELI...   236  1e-61
gi|461924|sp|P33906|DEAD_KLEPN ATP-DEPENDENT RNA HELICASE DEAD ...   232  3e-60
gi|476338 (U08102) putative RNA helicase [Caenorhabditis elegans]    228  4e-59
gi|3861207|emb|CAA15107| (AJ235272) PUTATIVE ATP-DEPENDENT RNA ...   227  9e-59
gi|3879543|emb|CAA90406| (Z50071) similar to ATP-dependent heli...   224  1e-57
gi|3879544|emb|CAA90407| (Z50071) similar to ATP-dependent heli...   224  1e-57
gi|3879545|emb|CAA90408| (Z50071) similar to ATP-dependent heli...   224  1e-57
gi|3323078 (AE001248) ATP-dependent RNA helicase [Treponema pal...   215  3e-55
gi|4104820 (AF040045) DEAD box RNA helicase homolog [Anabaena v...   215  5e-55
gi|3288677|gnl|PID|d1032186 (D89592) rhlE [Vibrio alginolyticus]     213  2e-54
gi|1707017 (U78721) RNA helicase isolog [Arabidopsis thaliana]       210  2e-53
gi|118283|sp|P24782|DBP2_SCHPO P68-LIKE PROTEIN >gi|82829|pir||...   208  7e-53
gi|133134|sp|P19109|RM62_DROME PUTATIVE ATP-DEPENDENT RNA HELIC...   207  1e-52
gi|173419 (L11574) p68 RNA helicase [Schizosaccharomyces pombe]...   207  1e-52
gi|416881|sp|P21693|DBPA_ECOLI ATP-DEPENDENT RNA HELICASE DBPA ...   206  2e-52
gi|3149952|gnl|PID|d1029287 (AB010259) DRH1 [Arabidopsis thaliana]   206  2e-52
gi|1749748|gnl|PID|d1014628 (D89270) similar to Saccharomyces c...   206  3e-52
gi|1174440|sp|P44701|SRMB_HAEIN ATP-DEPENDENT RNA HELICASE SRMB...   205  6e-52
gi|95749|pir||S12698 probable RNA helicase - Escherichia coli >...   204  1e-51
gi|1169228|sp|P46942|DB10_NICSY RNA HELICASE-LIKE PROTEIN DB10 ...   204  1e-51
gi|2275211 (AC002337) RNA helicase isolog [Arabidopsis thaliana]     203  2e-51
gi|1363325|pir||A57514 RNA helicase HEL117 - rat >gi|897915 (U2...   202  4e-51
gi|3882323|gnl|PID|d1035502 (AB018344) KIAA0801 protein [Homo s...   202  4e-51
gi|1731006|sp|P54475|YQFR_BACSU PROBABLE RNA HELICASE IN CCCA-S...   198  4e-50
gi|2463519|dbj||AB005147_1 (AB005147) vas [Danio rerio]              198  6e-50
gi|2558535|emb|CAA72735| (Y12007) RNA helicase (DEAD box) [Dani...   198  8e-50
gi|1351656|sp|Q09903|YAJ3_SCHPO PUTATIVE ATP-DEPENDENT RNA HELI...   197  1e-49
gi|3641|emb|CAA39465| (X55993) DBP1 [Saccharomyces cerevisiae]       196  2e-49
gi|1706311|sp|P24784|DBP1_YEAST PROBABLE ATP-DEPENDENT RNA HELI...   196  2e-49
gi|2072674|emb|CAB08305| (Z95120) rhlE [Mycobacterium tuberculo...   196  2e-49
gi|2829912 (AC002291) Similar ATP-dependent RNA Helicase [Arabi...   196  2e-49
gi|1944405|gnl|PID|d1020349 (D86601) DEAD family RNA helicase; ...   196  3e-49
gi|3845295 (AE001421) RNA helicase [Plasmodium falciparum]           195  5e-49
gi|529704 (U13070) similar to RNA helicases [Caenorhabditis ele...   194  7e-49
gi|4126714|gnl|PID|d1037697 (AB016603) DEAD-Box Protein [Ciona ...   194  9e-49
gi|4126716|gnl|PID|d1037698 (AB016604) DEAD-Box Protein [Ciona ...   194  9e-49
gi|2134051|pir||I51235 DEAD box protein - African clawed frog (...   194  1e-48
gi|1076837|pir||S53813 probable RNA helicase - slime mold (Dict...   193  2e-48
gi|3986287|gnl|PID|d1035980 (AB017003) DjVLGB [Dugesia japonica]     192  4e-48
gi|84895|pir||A31922 ATP-dependent RNA helicase homolog - fruit...   189  3e-47
gi|1352826|sp|P09052|VASA_DROME VASA PROTEIN >gi|1054723|emb|CA...   189  3e-47
gi|2500525|sp|Q61496|DDX4_MOUSE DEAD BOX PROTEIN 4 (VASA HOMOLO...   188  5e-47
gi|2500526|sp|Q64060|DDX4_RAT DEAD BOX PROTEIN 4 (VASA HOMOLOG)...   185  3e-46
gi|1723271|sp|Q10202|YAXB_SCHPO PUTATIVE ATP-DEPENDENT RNA HELI...   185  3e-46
gi|1170186|sp|P20448|DBP4_YEAST PROBABLE ATP-DEPENDENT RNA HELI...   185  6e-46
gi|1619952 (U72149) putative RNA helicase [Saccharomyces cerevi...   185  6e-46
gi|1172596|sp|P23394|PR28_YEAST PRE-MRNA SPLICING FACTOR RNA HE...   182  3e-45
gi|1173121|sp|P45818|ROK1_YEAST ATP-DEPENDENT RNA HELICASE ROK1...   176  3e-43
gi|1764094 (U81597) ATP-dependent RNA helicase [Leishmania amaz...   175  5e-43
gi|2443870 (AC002985) R27090_2 [Homo sapiens]                        170  1e-41
gi|1351666|sp|Q09916|YAK2_SCHPO PUTATIVE ATP-DEPENDENT RNA HELI...   166  2e-40
gi|1488647|emb|CAA68193| (X99937) RNA helicase [Spinacia oleracea]   159  3e-38
gi|1488521|emb|CAA68194| (X99938) RNA helicase [Arabidopsis tha...   152  4e-36
gi|3775997|emb|CAA09201| (AJ010462) RNA helicase [Arabidopsis t...   150  2e-35
gi|3775995|emb|CAA09200| (AJ010461) RNA helicase [Arabidopsis t...   145  7e-34
gi|3327394 (AC004483) putative RNA helicase [Arabidopsis thaliana]   143  3e-33
gi|4832|emb|CAA41110| (X58099) eIF4a [Saccharomyces cerevisiae]      127  2e-28
gi|2367301 (AE000458) ATP-dependent DNA helicase [Escherichia c...    82  9e-15
gi|2851488|sp|P15043|RECQ_ECOLI ATP-DEPENDENT DNA HELICASE RECQ       82  9e-15
gi|72995|pir||BVECRQ recQ protein - Escherichia coli >gi|148221...    79  4e-14
gi|147559 (M30198) recQ [Escherichia coli]                            79  4e-14
gi|3776003|emb|CAA09204| (AJ010465) RNA helicase [Arabidopsis t...    78  1e-13
gi|1931649 (U95973) DNA helicase isolog [Arabidopsis thaliana]        69  6e-11
gi|3322364 (AE001194) ATP-dependent DNA helicase, putative [Tre...    63  4e-09
gi|2621366 (AE000816) ATP-dependent helicase [Methanobacterium ...    52  7e-06
gi|4008108 (AF107116) putative ATP-dependent RNA helicase Ded1p...    45  0.001

>gi|2500524|sp|Q12099|FAL1_YEAST PROBABLE ATP-DEPENDENT RNA HELICASE
           FAL1 >gi|1078511|pir||S54644 hypothetical protein
           YDR021w - yeast (Saccharomyces cerevisiae)
           >gi|840874|emb|CAA89846| (Z49770) unknown [Saccharomyces
           cerevisiae] >gi|1216228|emb|CAA65213| (X95966)
           orf:PZC399 [Saccharomyces cerevisiae]
           >gi|1431450|emb|CAA98842| (Z74317) ORF YDR021w
           [Saccharomyces cerevisiae]
           Length = 399
           
 Score =  755 bits (1929), Expect = 0.0
 Identities = 383/399 (95%), Positives = 383/399 (95%)

Query: 1   MSFDREEDQXXXXXXXXXXXXXXXXESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISG 60
           MSFDREEDQ                ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISG
Sbjct: 1   MSFDREEDQKLKFKTSKKLKVSSTFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISG 60

Query: 61  KDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNV 120
           KDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNV
Sbjct: 61  KDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNV 120

Query: 121 NAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLS 180
           NAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLS
Sbjct: 121 NAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLS 180

Query: 181 ETLGFKQQIYDIFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIK 240
           ETLGFKQQIYDIFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIK
Sbjct: 181 ETLGFKQQIYDIFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIK 240

Query: 241 QYVVNVDKEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMK 300
           QYVVNVDKEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMK
Sbjct: 241 QYVVNVDKEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMK 300

Query: 301 QEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFG 360
           QEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFG
Sbjct: 301 QEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFG 360

Query: 361 RKGVAINFITKADLAKLREIEKFYSIKINPMPANFAELS 399
           RKGVAINFITKADLAKLREIEKFYSIKINPMPANFAELS
Sbjct: 361 RKGVAINFITKADLAKLREIEKFYSIKINPMPANFAELS 399


>gi|1352438|sp|Q10055|IF4N_SCHPO EUKARYOTIC INITIATION FACTOR
           4A-LIKE PROTEIN C1F5.10 >gi|1103737|emb|CAA92238|
           (Z68136) unknown [Schizosaccharomyces pombe]
           Length = 394
           
 Score =  511 bits (1301), Expect = e-144
 Identities = 249/373 (66%), Positives = 311/373 (82%), Gaps = 3/373 (0%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           E MNLK+DLLRGIY+YG+E PS++QSRAI QI  G+DVIAQAQSGTGKTATF+IG+LQ+I
Sbjct: 24  EEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQSI 83

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           DL  +D QALILSPTRELA QI  VV  LGD+MNV   A  GG ++ +D+KK+  +G   
Sbjct: 84  DLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLD-YGQHV 142

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           VSGTPGRV DMI+++ L+TRNV+ML+LDEADELL++  GFK+QIYDI+  LP   QVVVV
Sbjct: 143 VSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQ--GFKEQIYDIYRYLPPGTQVVVV 200

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SAT+ +D+LE+T KF  +PV+ILVKRDE++LEG+KQY + V+KEEWKFDTLCD+YD+LTI
Sbjct: 201 SATLPQDVLEMTNKFTTNPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTI 260

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
           TQ VIFCN+++KVDWL++++ ++NF V SMHG+M Q+ERD +M DFR G+SRVLI TD+W
Sbjct: 261 TQAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICTDIW 320

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARGIDVQQVSLVINYDLP   ENYIHRIGRSGRFGRKGVAINF+T  D+  LR+IE++YS
Sbjct: 321 ARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTNEDVRILRDIEQYYS 380

Query: 386 IKINPMPANFAEL 398
             I+ MP N  ++
Sbjct: 381 TVIDEMPMNIGDM 393


>gi|1170507|sp|P41380|IF43_NICPL EUKARYOTIC INITIATION FACTOR 4A-3
           (EIF-4A-3) >gi|100276|pir||S22579 translation initiation
           factor eIF-4A - curled-leaved tobacco
           >gi|19699|emb|CAA43514| (X61206) nicotiana eukaryotic
           translation initiation factor 4A [Nicotiana
           plumbaginifolia]
           Length = 391
           
 Score =  491 bits (1251), Expect = e-138
 Identities = 236/371 (63%), Positives = 303/371 (81%), Gaps = 3/371 (0%)

Query: 28  MNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDL 87
           M +KDDLLRG+Y YGFE PS+IQ RA+  IISG+DVIAQAQSGTGKT+   + + Q +D 
Sbjct: 23  MGIKDDLLRGVYQYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMIALTVCQIVDT 82

Query: 88  RKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVS 147
           +  ++QALILSPTRELA+Q  +V+  +GDY+NV A A  GGK++ +D++K++ HG Q VS
Sbjct: 83  KSSEVQALILSPTRELAAQTEKVILAIGDYINVQAHACIGGKSVGEDIRKLE-HGVQVVS 141

Query: 148 GTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSA 207
           GTPGRV DMIK++ L+TR +++L+LDE+DE+LS   GFK QIYD++  LP   QVV++SA
Sbjct: 142 GTPGRVCDMIKRRTLRTRGIKLLILDESDEMLSR--GFKDQIYDVYRYLPPELQVVLISA 199

Query: 208 TMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQ 267
           T+  +ILE+T KFM DPV+ILVKRDE++LEGIKQ+ V V+KEEWKFDTLCD+YD+LTITQ
Sbjct: 200 TLPNEILEITSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQ 259

Query: 268 CVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWAR 327
            VIFCNTK+KVDWL+ ++ ++NF V SMHGDM Q+ERD +M +FR G +RVLI+TDVWAR
Sbjct: 260 AVIFCNTKRKVDWLTSKMRENNFTVSSMHGDMPQKERDAIMAEFRGGTTRVLITTDVWAR 319

Query: 328 GIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYSIK 387
           G+DVQQVSLVINYDLP   E YIHRIGRSGRFGRKGVAINF+   D+  LR+IE++YS +
Sbjct: 320 GLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQ 379

Query: 388 INPMPANFAEL 398
           I+ MP N A+L
Sbjct: 380 IDEMPMNVADL 390


>gi|2104219|gnl|PID|d1005415 (D21853) KIAA0111 [Homo sapiens]
           Length = 411
           
 Score =  486 bits (1238), Expect = e-136
 Identities = 234/373 (62%), Positives = 308/373 (81%), Gaps = 3/373 (0%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           ++M L++DLLRGIY+YGFE PS+IQ RAI QII G+DVIAQ+QSGTGKTATF+I +LQ +
Sbjct: 41  DTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCL 100

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           D++ ++ QALIL+PTRELA QI + +  LGDYMNV   A  GG  + +D++K+  +G   
Sbjct: 101 DIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD-YGQHV 159

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           V+GTPGRV DMI+++ L+TR ++MLVLDEADE+L++  GFK+QIYD++  LP   QVV++
Sbjct: 160 VAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNK--GFKEQIYDVYRYLPPATQVVLI 217

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SAT+  +ILE+T KFM DP++ILVKRDE++LEGIKQ+ V V++EEWKFDTLCD+YD+LTI
Sbjct: 218 SATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 277

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
           TQ VIFCNTK+KVDWL++++ ++NF V SMHGDM Q+ER+ +M +FR+G SRVLISTDVW
Sbjct: 278 TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVW 337

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARG+DV QVSL+INYDLP   E YIHRIGRSGR+GRKGVAINF+   D+  LR+IE++YS
Sbjct: 338 ARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYS 397

Query: 386 IKINPMPANFAEL 398
            +I+ MP N A+L
Sbjct: 398 TQIDEMPMNVADL 410


>gi|729821|sp|P38919|IF4N_HUMAN EUKARYOTIC INITIATION FACTOR 4A-LIKE
           NUK-34 (HA0659) >gi|631472|pir||S45142 translation
           initiation factor eIF-4A2 homolog - human
           >gi|496902|emb|CAA56074| (X79538) translation initiation
           factor [Homo sapiens]
           Length = 411
           
 Score =  485 bits (1235), Expect = e-136
 Identities = 233/373 (62%), Positives = 308/373 (82%), Gaps = 3/373 (0%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           ++M L++DLLRGIY+YGFE PS+IQ RAI QII G+DVIAQ+QSGTGKTATF+I +LQ +
Sbjct: 41  DTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCL 100

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           D++ ++ QALIL+PTRELA QI + +  LGDYMNV   A  GG  + +D++K+  +G   
Sbjct: 101 DIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD-YGQHV 159

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           V+GTPGRV DMI+++ L+TR ++MLVLDEADE+L++  GFK+QIYD++  LP   QVV++
Sbjct: 160 VAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNK--GFKEQIYDVYRYLPSATQVVLI 217

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SAT+  +ILE+T KFM DP++ILVKRDE++LEGIKQ+ V V++EEWKFDTLCD+YD+LTI
Sbjct: 218 SATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 277

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
           TQ VIFCNTK+KVDWL++++ ++NF V SMHGDM Q+ER+ +M +FR+G SRVLISTDVW
Sbjct: 278 TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVW 337

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARG+DV QVSL+INYDLP   E YIHRIGRSG++GRKGVAINF+   D+  LR+IE++YS
Sbjct: 338 ARGLDVPQVSLIINYDLPNNRELYIHRIGRSGQYGRKGVAINFVKNDDIRILRDIEQYYS 397

Query: 386 IKINPMPANFAEL 398
            +I+ MP N A+L
Sbjct: 398 TQIDEMPMNVADL 410


>gi|2443810 (AF020432) eukaryotic translation initiation factor
           XeIF-4AIII [Xenopus laevis]
           Length = 414
           
 Score =  483 bits (1231), Expect = e-136
 Identities = 231/373 (61%), Positives = 307/373 (81%), Gaps = 3/373 (0%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           ++M L++DLLRGIY+YGFE PS+IQ +AI QII G+DVIAQ+QSGTGKTATF + +LQ +
Sbjct: 44  DTMGLREDLLRGIYAYGFEKPSAIQQKAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCL 103

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           D++ ++ QALIL+PT+ELA QI +V+  LGDYMNV   A  GG  + +D++K+  +G   
Sbjct: 104 DIQIRETQALILAPTKELARQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLD-YGQHV 162

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           V+GTPGRV DMI+++ L+TR ++MLVLDEADE+L++  GFK+QIYD++  LP   QV ++
Sbjct: 163 VAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNK--GFKEQIYDVYRYLPPATQVCLI 220

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SAT+  +ILE+T KFM DP++ILVKRDE++LEGIKQ+ V V++EEWKFDTLCD+YD+LTI
Sbjct: 221 SATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 280

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
           TQ VIFCNTK+KVDWL++++ ++NF V SMHGDM Q+ER+ +M +FR+G SRVLISTDVW
Sbjct: 281 TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVW 340

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARG+DV QVSL+INYDLP   E YIHRIGRSGR+GRKGVAINF+   D+  LR+IE++YS
Sbjct: 341 ARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYS 400

Query: 386 IKINPMPANFAEL 398
            +I+ MP N A+L
Sbjct: 401 TQIDEMPMNVADL 413


>gi|2773184 (AF039720) similar to the "DEAD" box family of
           helicases; most similar to eukaryotic initiation factor
           4A [Caenorhabditis elegans]
           Length = 399
           
 Score =  482 bits (1228), Expect = e-135
 Identities = 234/373 (62%), Positives = 306/373 (81%), Gaps = 3/373 (0%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           + M L++DLLRGIY+YGFE PS+IQ RA+  I+  +DVIAQAQSGTGKTATF+I +LQ++
Sbjct: 29  DKMGLREDLLRGIYAYGFEKPSAIQQRAVPAILKARDVIAQAQSGTGKTATFSISVLQSL 88

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           D + ++ QALILSPTRELA QI +VV  LGDYMNV   A  GG  L +D++K+  +G   
Sbjct: 89  DTQVRETQALILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLD-YGQHV 147

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           VSGTPGRV DMI+++ L+TR +++LVLDEADE+L++  GFK+Q+YDI+  LP   QVV++
Sbjct: 148 VSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLNK--GFKEQLYDIYRYLPPGAQVVLL 205

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SAT+  +ILE+T KFM DP++ILVKRDE++LEGIKQ+ V VD+EEWKFDTL D+YD+LTI
Sbjct: 206 SATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLIDLYDTLTI 265

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
           TQ V+FCNT++KVDWL+ ++ ++NF V SMHGDM+Q++RD+VM +FR G +RVLISTDVW
Sbjct: 266 TQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVW 325

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARG+DV QVSLVINYDLP   E YIHRIGRSGRFGRKGVAINF+ + D+  LR+IE++YS
Sbjct: 326 ARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQDDVRILRDIEQYYS 385

Query: 386 IKINPMPANFAEL 398
            +I+ MP N A++
Sbjct: 386 TQIDEMPMNIADI 398


>gi|3775985|emb|CAA09195| (AJ010456) RNA helicase [Arabidopsis
           thaliana]
           Length = 391
           
 Score =  476 bits (1211), Expect = e-133
 Identities = 229/371 (61%), Positives = 299/371 (79%), Gaps = 3/371 (0%)

Query: 28  MNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDL 87
           M +K+D+LRG+Y YGFE PS+IQ RA+  I+ G+DVIAQAQSGTGKT+   + + Q +D 
Sbjct: 23  MGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQVVDT 82

Query: 88  RKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVS 147
             +++QALILSPTRELA+Q  + ++ +G + N+ A A  GG ++ +D++K++ HG   VS
Sbjct: 83  SSREVQALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDIRKLE-HGVHVVS 141

Query: 148 GTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSA 207
           GTPGRV DMIK++ L+TR +++L+LDE+DE+LS   GFK QIYD++  LP + QV +VSA
Sbjct: 142 GTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSR--GFKDQIYDVYRYLPPDLQVCLVSA 199

Query: 208 TMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQ 267
           T+  +ILE+T KFM +PVKILVKRDE++LEGIKQ+ V V+KEEWKFDTLCD+YD+LTITQ
Sbjct: 200 TLPHEILEMTSKFMTEPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQ 259

Query: 268 CVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWAR 327
            VIFCNTK+KVD+LS+++   NF V SMHGDM Q+ERD +MN+FR+G SRVLI+TDVWAR
Sbjct: 260 AVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLITTDVWAR 319

Query: 328 GIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYSIK 387
           GIDVQQVSLVINYDLP   E YIHRIGRSGRFGRKGVAINF+   D+  LR+IE++YS +
Sbjct: 320 GIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQ 379

Query: 388 INPMPANFAEL 398
           I+ MP N A+L
Sbjct: 380 IDEMPMNVADL 390


>gi|1708418|sp|P47943|IF4A_SCHPO EUKARYOTIC INITIATION FACTOR 4A
           (EIF-4A) >gi|1321961|emb|CAA56772| (X80796) translation
           initiation factor eIF-4A [Schizosaccharomyces pombe]
           >gi|2222814 (L40627) cell cycle control protein eIF-4A
           [Schizosaccharomyces pombe]
           Length = 392
           
 Score =  474 bits (1207), Expect = e-133
 Identities = 237/373 (63%), Positives = 293/373 (78%), Gaps = 3/373 (0%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           + MNLK +LLRGIY+YGFE PS+IQ RAI  I+  +DV+AQAQSGTGKTATF+I +LQ I
Sbjct: 22  DDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQKI 81

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           D   K  QALIL+PTRELA QI +VV  LGD MNV   A  GG  ++DD+  +Q  G   
Sbjct: 82  DTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQA-GVHV 140

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           V GTPGRV DMI+++ L T  VQM VLDEADE+LS   GFK QIYDIF  LP   QVV++
Sbjct: 141 VVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSR--GFKDQIYDIFQLLPPTAQVVLL 198

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SATM +D+LEVT KFM DP++ILVK+DE++LEGIKQ+ V V+KEEWK DTLCD+Y+++T+
Sbjct: 199 SATMPQDVLEVTTKFMRDPIRILVKKDELTLEGIKQFYVAVEKEEWKLDTLCDLYETVTV 258

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
           TQ VIFCNT++KVDWL+++L + +F V SMHGDM Q +RD +M++FRTG SR+LI+TD+ 
Sbjct: 259 TQAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLL 318

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARGIDVQQVSLVINYDLP   ENYIHRIGR GRFGRKGV+INF+T  D+  +REIE+FY+
Sbjct: 319 ARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFVTNDDVRMMREIEQFYN 378

Query: 386 IKINPMPANFAEL 398
             I  MP N A+L
Sbjct: 379 THIEEMPMNIADL 391


>gi|90965|pir||S00986 translation initiation factor eIF-4A I - mouse
           Length = 407
           
 Score =  463 bits (1179), Expect = e-130
 Identities = 228/373 (61%), Positives = 288/373 (77%), Gaps = 2/373 (0%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           + MNL + LLRGIY+YGFE PS+IQ RAI   I G DVIAQAQSGTGKTATF I +LQ I
Sbjct: 36  DDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQI 95

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           +L  K  QAL+L+PTRELA QI +VV  LGDYM  +  A  GG  ++ +++K+Q      
Sbjct: 96  ELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHI 155

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           V GTPGRV DM+ ++ L  + ++M VLDEADE+LS   GFK QIYDIF KL  N QVV++
Sbjct: 156 VIGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR--GFKDQIYDIFQKLNSNTQVVLL 213

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SATM  D+LEVT+KFM DP++ILVK++E++LEGI+Q+ +NV++EEWK DTLCD+Y++LTI
Sbjct: 214 SATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTI 273

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
           TQ VIF NT++KVDWL++++   +F V +MHGDM Q+ERD +M +FR+G SRVLI+TD+ 
Sbjct: 274 TQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLL 333

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARGIDVQQVSLVINYDLP   ENYIHRIGR GRFGRKGVAIN +T+ D   LR+IE FY+
Sbjct: 334 ARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYN 393

Query: 386 IKINPMPANFAEL 398
             I  MP N A+L
Sbjct: 394 TSIEEMPLNVADL 406


>gi|90964|pir||JS0039 translation initiation factor eIF-4A - mouse
           >gi|556308 (L36611) protein synthesis initiation factor
           4A [Mus musculus]
           Length = 406
           
 Score =  463 bits (1179), Expect = e-130
 Identities = 227/373 (60%), Positives = 288/373 (76%), Gaps = 2/373 (0%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           + MNL + LLRGIY+YGFE PS+IQ RAI   I G DVIAQAQSGTGKTATF I +LQ I
Sbjct: 35  DDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQI 94

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           +L  K  QAL+L+PTRELA QI +VV  LGDYM  +  A  GG  ++ +++K+Q      
Sbjct: 95  ELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHI 154

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           + GTPGRV DM+ ++ L  + ++M VLDEADE+LS   GFK QIYDIF KL  N QVV++
Sbjct: 155 IVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR--GFKDQIYDIFQKLNSNTQVVLL 212

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SATM  D+LEVT+KFM DP++ILVK++E++LEGI+Q+ +NV++EEWK DTLCD+Y++LTI
Sbjct: 213 SATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTI 272

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
           TQ VIF NT++KVDWL++++   +F V +MHGDM Q+ERD +M +FR+G SRVLI+TD+ 
Sbjct: 273 TQAVIFINTRRKVDWLTEKMHARDFTVCAMHGDMDQKERDVIMREFRSGSSRVLITTDLL 332

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARGIDVQQVSLVINYDLP   ENYIHRIGR GRFGRKGVAIN +T+ D   LR+IE FY+
Sbjct: 333 ARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYN 392

Query: 386 IKINPMPANFAEL 398
             I  MP N A+L
Sbjct: 393 TSIEEMPLNVADL 405


>gi|417180|sp|P04765|IF41_HUMAN EUKARYOTIC INITIATION FACTOR 4A-I
           (EIF-4A-I) >gi|422959|pir||S33681 translation initiation
           factor eIF-4A.I - human >gi|219403|gnl|PID|d1003402
           (D13748) eukaryotic initiation factor 4AI [Homo sapiens]
           >gi|2943740|gnl|PID|d1026001 (AB011595) eIF4A [Mus
           musculus] >gi|227238|prf||1617105B initiation factor 4AI
           [Oryctolagus cuniculus]
           Length = 406
           
 Score =  463 bits (1178), Expect = e-129
 Identities = 227/373 (60%), Positives = 288/373 (76%), Gaps = 2/373 (0%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           + MNL + LLRGIY+YGFE PS+IQ RAI   I G DVIAQAQSGTGKTATF I +LQ I
Sbjct: 35  DDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQI 94

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           +L  K  QAL+L+PTRELA QI +VV  LGDYM  +  A  GG  ++ +++K+Q      
Sbjct: 95  ELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHI 154

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           + GTPGRV DM+ ++ L  + ++M VLDEADE+LS   GFK QIYDIF KL  N QVV++
Sbjct: 155 IVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR--GFKDQIYDIFQKLNSNTQVVLL 212

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SATM  D+LEVT+KFM DP++ILVK++E++LEGI+Q+ +NV++EEWK DTLCD+Y++LTI
Sbjct: 213 SATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTI 272

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
           TQ VIF NT++KVDWL++++   +F V +MHGDM Q+ERD +M +FR+G SRVLI+TD+ 
Sbjct: 273 TQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLL 332

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARGIDVQQVSLVINYDLP   ENYIHRIGR GRFGRKGVAIN +T+ D   LR+IE FY+
Sbjct: 333 ARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYN 392

Query: 386 IKINPMPANFAEL 398
             I  MP N A+L
Sbjct: 393 TSIEEMPLNVADL 405


>gi|72888|pir||FIMS4A translation initiation factor eIF-4A - mouse
           >gi|50814|emb|CAA26842| (X03039) put. eIF-4A (aa 1-390)
           [Mus musculus] >gi|50819|emb|CAA26845| (X03040) put.
           eIF-4A (aa 1-390) [Mus musculus]
           Length = 390
           
 Score =  463 bits (1178), Expect = e-129
 Identities = 227/373 (60%), Positives = 288/373 (76%), Gaps = 2/373 (0%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           + MNL + LLRGIY+YGFE PS+IQ RAI   I G DVIAQAQSGTGKTATF I +LQ I
Sbjct: 19  DDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQI 78

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           +L  K  QAL+L+PTRELA QI +VV  LGDYM  +  A  GG  ++ +++K+Q      
Sbjct: 79  ELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHI 138

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           + GTPGRV DM+ ++ L  + ++M VLDEADE+LS   GFK QIYDIF KL  N QVV++
Sbjct: 139 IVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR--GFKDQIYDIFQKLNSNTQVVLL 196

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SATM  D+LEVT+KFM DP++ILVK++E++LEGI+Q+ +NV++EEWK DTLCD+Y++LTI
Sbjct: 197 SATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTI 256

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
           TQ VIF NT++KVDWL++++   +F V +MHGDM Q+ERD +M +FR+G SRVLI+TD+ 
Sbjct: 257 TQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLL 316

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARGIDVQQVSLVINYDLP   ENYIHRIGR GRFGRKGVAIN +T+ D   LR+IE FY+
Sbjct: 317 ARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYN 376

Query: 386 IKINPMPANFAEL 398
             I  MP N A+L
Sbjct: 377 TSIEEMPLNVADL 389


>gi|266336|sp|P29562|IF41_RABIT EUKARYOTIC INITIATION FACTOR 4A-I
           (EIF-4A-I) >gi|109295|pir||S13269 initiation factor
           eIF-4A - rabbit
           Length = 394
           
 Score =  463 bits (1178), Expect = e-129
 Identities = 227/373 (60%), Positives = 288/373 (76%), Gaps = 2/373 (0%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           + MNL + LLRGIY+YGFE PS+IQ RAI   I G DVIAQAQSGTGKTATF I +LQ I
Sbjct: 23  DDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQI 82

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           +L  K  QAL+L+PTRELA QI +VV  LGDYM  +  A  GG  ++ +++K+Q      
Sbjct: 83  ELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHI 142

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           + GTPGRV DM+ ++ L  + ++M VLDEADE+LS   GFK QIYDIF KL  N QVV++
Sbjct: 143 IVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR--GFKDQIYDIFQKLNSNTQVVLL 200

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SATM  D+LEVT+KFM DP++ILVK++E++LEGI+Q+ +NV++EEWK DTLCD+Y++LTI
Sbjct: 201 SATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTI 260

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
           TQ VIF NT++KVDWL++++   +F V +MHGDM Q+ERD +M +FR+G SRVLI+TD+ 
Sbjct: 261 TQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLL 320

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARGIDVQQVSLVINYDLP   ENYIHRIGR GRFGRKGVAIN +T+ D   LR+IE FY+
Sbjct: 321 ARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYN 380

Query: 386 IKINPMPANFAEL 398
             I  MP N A+L
Sbjct: 381 TSIEEMPLNVADL 393


>gi|50815|emb|CAA26843| (X03039) put. altern. eIF-4A (aa 1-370) [Mus
           musculus] >gi|50820|emb|CAA26846| (X03040) put. altern.
           eIF-4A (aa 1-370) [Mus musculus]
           Length = 370
           
 Score =  462 bits (1176), Expect = e-129
 Identities = 227/371 (61%), Positives = 287/371 (77%), Gaps = 2/371 (0%)

Query: 28  MNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDL 87
           MNL + LLRGIY+YGFE PS+IQ RAI   I G DVIAQAQSGTGKTATF I +LQ I+L
Sbjct: 1   MNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL 60

Query: 88  RKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVS 147
             K  QAL+L+PTRELA QI +VV  LGDYM  +  A  GG  ++ +++K+Q      + 
Sbjct: 61  DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIV 120

Query: 148 GTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSA 207
           GTPGRV DM+ ++ L  + ++M VLDEADE+LS   GFK QIYDIF KL  N QVV++SA
Sbjct: 121 GTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR--GFKDQIYDIFQKLNSNTQVVLLSA 178

Query: 208 TMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQ 267
           TM  D+LEVT+KFM DP++ILVK++E++LEGI+Q+ +NV++EEWK DTLCD+Y++LTITQ
Sbjct: 179 TMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQ 238

Query: 268 CVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWAR 327
            VIF NT++KVDWL++++   +F V +MHGDM Q+ERD +M +FR+G SRVLI+TD+ AR
Sbjct: 239 AVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLAR 298

Query: 328 GIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYSIK 387
           GIDVQQVSLVINYDLP   ENYIHRIGR GRFGRKGVAIN +T+ D   LR+IE FY+  
Sbjct: 299 GIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTS 358

Query: 388 INPMPANFAEL 398
           I  MP N A+L
Sbjct: 359 IEEMPLNVADL 369


>gi|2507330|sp|P10630|IF42_MOUSE EUKARYOTIC INITIATION FACTOR 4A-II
           (EIF-4A-II) >gi|90966|pir||S00985 translation initiation
           factor eIF-4A II - mouse >gi|673434|emb|CAA40269|
           (X56953) protein synthesis initiation factor 4A [Mus
           musculus] >gi|227239|prf||1617105C initiation factor
           4AII [Oryctolagus cuniculus]
           Length = 407
           
 Score =  462 bits (1175), Expect = e-129
 Identities = 224/373 (60%), Positives = 291/373 (77%), Gaps = 2/373 (0%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           + MNLK+ LLRGIY+YGFE PS+IQ RAI   I G DVIAQAQSGTGKTATF I +LQ +
Sbjct: 36  DDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQL 95

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           ++  K+ QAL+L+PTRELA QI +V+  LGDYM     A  GG  ++++++K+Q      
Sbjct: 96  EIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHI 155

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           V GTPGRV DM+ ++ L  + ++M VLDEADE+LS   GFK QIY+IF KL  + QVV++
Sbjct: 156 VVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSR--GFKDQIYEIFQKLNTSIQVVLL 213

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SATM  D+LEVT+KFM DP++ILVK++E++LEGIKQ+ +NV++EEWK DTLCD+Y++LTI
Sbjct: 214 SATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTI 273

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
           TQ VIF NT++KVDWL++++   +F V ++HGDM Q+ERD +M +FR+G SRVLI+TD+ 
Sbjct: 274 TQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLL 333

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARGIDVQQVSLVINYDLP   ENYIHRIGR GRFGRKGVAINF+T+ D   LR+IE FY+
Sbjct: 334 ARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYN 393

Query: 386 IKINPMPANFAEL 398
             +  MP N A+L
Sbjct: 394 TTVEEMPMNVADL 406


>gi|673433|emb|CAA40268| (X56953) protein synthesis initiation
           factor 4A [Mus musculus]
           Length = 408
           
 Score =  462 bits (1175), Expect = e-129
 Identities = 224/373 (60%), Positives = 291/373 (77%), Gaps = 2/373 (0%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           + MNLK+ LLRGIY+YGFE PS+IQ RAI   I G DVIAQAQSGTGKTATF I +LQ +
Sbjct: 37  DDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQL 96

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           ++  K+ QAL+L+PTRELA QI +V+  LGDYM     A  GG  ++++++K+Q      
Sbjct: 97  EIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHI 156

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           V GTPGRV DM+ ++ L  + ++M VLDEADE+LS   GFK QIY+IF KL  + QVV++
Sbjct: 157 VVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSR--GFKDQIYEIFQKLNTSIQVVLL 214

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SATM  D+LEVT+KFM DP++ILVK++E++LEGIKQ+ +NV++EEWK DTLCD+Y++LTI
Sbjct: 215 SATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTI 274

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
           TQ VIF NT++KVDWL++++   +F V ++HGDM Q+ERD +M +FR+G SRVLI+TD+ 
Sbjct: 275 TQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLL 334

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARGIDVQQVSLVINYDLP   ENYIHRIGR GRFGRKGVAINF+T+ D   LR+IE FY+
Sbjct: 335 ARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYN 394

Query: 386 IKINPMPANFAEL 398
             +  MP N A+L
Sbjct: 395 TTVEEMPMNVADL 407


>gi|2500513|sp|Q14240|IF42_HUMAN EUKARYOTIC INITIATION FACTOR 4A-II
           (EIF-4A-II) >gi|485388|gnl|PID|d1006902 (D30655)
           eukaryotic initiation factor 4AII [Homo sapiens]
           >gi|1195610|bbs|172671 (S79942) protein synthesis
           initiation factor 4A-II homolog=EIF4A2 [human, fetal
           lung tissue, Peptide, 407 aa] [Homo sapiens]
           Length = 407
           
 Score =  460 bits (1172), Expect = e-129
 Identities = 224/373 (60%), Positives = 289/373 (77%), Gaps = 2/373 (0%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           + MNLK+ LLRGIY+YGFE PS+IQ RAI   I G DVIAQAQSGTGKTATF I +LQ +
Sbjct: 36  DDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQL 95

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           ++  K+ QAL+L+PTRELA QI +V+  LGDYM     A  GG  ++++++K+Q      
Sbjct: 96  EIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHI 155

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           V GTPGRV DM+ ++ L  + ++M VLDEADE+LS   GFK QIY+IF KL  + QVV  
Sbjct: 156 VVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSR--GFKDQIYEIFQKLNTSIQVVFA 213

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SATM  D+LEVT+KFM DP++ILVK++E++LEGIKQ+ +NV++EEWK DTLCD+Y++LTI
Sbjct: 214 SATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTI 273

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
           TQ VIF NT++KVDWL++++   +F V ++HGDM Q+ERD +M +FR+G SRVLI+TD+ 
Sbjct: 274 TQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLL 333

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARGIDVQQVSLVINYDLP   ENYIHRIGR GRFGRKGVAINF+T+ D   LR+IE FY+
Sbjct: 334 ARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYN 393

Query: 386 IKINPMPANFAEL 398
             +  MP N A+L
Sbjct: 394 TTVEEMPMNVADL 406


>gi|2370591|emb|CAA73167| (Y12590) translation initiation factor
           eIF4A I [Xenopus laevis]
           Length = 406
           
 Score =  458 bits (1166), Expect = e-128
 Identities = 224/373 (60%), Positives = 287/373 (76%), Gaps = 2/373 (0%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           + M+L + LLRGIY+YGFE PS+IQ RAI   I G DVIAQAQSGTGKTATF I +LQ I
Sbjct: 35  DDMSLSESLLRGIYAYGFEKPSAIQQRAIMPCIKGYDVIAQAQSGTGKTATFAISILQQI 94

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           +L  K  QAL+L+PTRELA QI +VV  LGDYM     A  GG  ++ +++K+Q      
Sbjct: 95  ELDMKATQALVLAPTRELAQQIQKVVMALGDYMGAGCHACIGGTDVRAEVQKLQSEAPHI 154

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           V GTPGRV DM+ ++ L  + ++M VLDEADE+LS   GFK QIYDIF KL  N QVV++
Sbjct: 155 VVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR--GFKDQIYDIFQKLSSNAQVVLL 212

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SATM  D+LEVT+KFM DP++ILVK++E++LEGI+Q+ +NV++EEWK DTLCD+Y++LTI
Sbjct: 213 SATMPADVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTI 272

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
           TQ VIF NT++KVDWL++++   +F V ++HGDM Q+ERD +M +FR+G SRVLI+TD+ 
Sbjct: 273 TQAVIFINTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLL 332

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARGIDVQQVSLVINYDLP   ENYIHRIGR GRFGRKGVAIN +T+ D   L++IE FY+
Sbjct: 333 ARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEDDKRTLKDIETFYN 392

Query: 386 IKINPMPANFAEL 398
             +  MP N A+L
Sbjct: 393 TTVEEMPMNVADL 405


>gi|124217|sp|P27639|IF4A_CAEEL EUKARYOTIC INITIATION FACTOR 4A
           (EIF-4A) >gi|283547|pir||S26281 translation initiation
           factor eIF-4A homolog - Caenorhabditis elegans
           >gi|6700|emb|CAA78102| (Z12116) unnamed protein product
           [Caenorhabditis elegans] >gi|532818 (U13876) C. elegans
           eukaryotic initiation factor 4a (EMBL:Z12116)
           [Caenorhabditis elegans]
           Length = 402
           
 Score =  453 bits (1154), Expect = e-127
 Identities = 216/373 (57%), Positives = 291/373 (77%), Gaps = 3/373 (0%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           + M LK++LLRGIY +GFE PS+IQ RAI    +GKDVIAQAQSGTGKTATF++ +LQ I
Sbjct: 32  DDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQRI 91

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           D     +QAL+++PTRELA QI +V+  LG+Y+NVN     GG +++DD +K++  G   
Sbjct: 92  DHEDPHVQALVMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDDQRKLEA-GIHV 150

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           V GTPGRV DMI +  L T  ++M VLDEADE+LS   GFK QIY++F  +P++ QVV++
Sbjct: 151 VVGTPGRVGDMINRNALDTSRIKMFVLDEADEMLSR--GFKDQIYEVFRSMPQDVQVVLL 208

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SATM  ++L+VT +FM +P++ILVK+DE++LEGI+Q+ +NV K+EWKFD LCD+Y+ + +
Sbjct: 209 SATMPSEVLDVTNRFMRNPIRILVKKDELTLEGIRQFYINVQKDEWKFDCLCDLYNVVNV 268

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
           TQ VIFCNT++KVD L++++ ++ F V  +HGDM Q ERD +M +FR+G SRVLI+TD+ 
Sbjct: 269 TQAVIFCNTRRKVDTLTEKMTENQFTVSCLHGDMDQAERDTIMREFRSGSSRVLITTDIL 328

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARGIDVQQVSLVINYDLP   ENYIHRIGRSGRFGRKGVAINF+T+ D  +L+EIE +Y+
Sbjct: 329 ARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTENDARQLKEIESYYT 388

Query: 386 IKINPMPANFAEL 398
            +I  MP + A+L
Sbjct: 389 TQIEEMPESIADL 401


>gi|50823|emb|CAA31025| (X12507) initiation factor 4AII (AA 1 - 407)
           [Mus musculus]
           Length = 407
           
 Score =  453 bits (1153), Expect = e-127
 Identities = 222/373 (59%), Positives = 287/373 (76%), Gaps = 2/373 (0%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           + MNLK+ LLRGIY+YGFE PS+IQ RAI   I G DVIAQAQSGTGKTATF I +LQ +
Sbjct: 36  DDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQL 95

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           ++  K+ QAL+L+PTRELA QI +V+  LGDYM     A  GG  ++++++K+Q      
Sbjct: 96  EIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHI 155

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           V GTPGRV DM+ ++ L  + ++M VLDEADE+LS   GFK QIY+   KL  + QVV++
Sbjct: 156 VVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSR--GFKDQIYERVQKLNTSIQVVLL 213

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SATM  D+LEVT+KFM DP++ILVK++E++LEGIKQ+ +NV++EEWK DTLCD+Y++LTI
Sbjct: 214 SATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTI 273

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
           TQ VIF NT++KVDWL++++    F V ++HGDM Q+ERD +M +FR+G SRVLI+TD+ 
Sbjct: 274 TQAVIFLNTRRKVDWLTEKMQAIYFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLL 333

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARGIDVQQVSLVINYDLP   ENYIHRIGR GRFGRKGVAINF+T+ D   LR IE FY+
Sbjct: 334 ARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRHIETFYN 393

Query: 386 IKINPMPANFAEL 398
             +  MP N A+L
Sbjct: 394 TTVEEMPMNGADL 406


>gi|462401|sp|Q02748|IF4A_DROME EUKARYOTIC INITIATION FACTOR 4A
           (EIF-4A) >gi|418925|pir||S30278 translation initiation
           factor eIF-4A - fruit fly (Drosophila melanogaster)
           >gi|311997|emb|CAA48790| (X69045) eukaryotic translation
           initiation factor 4A (eIF-4A) [Drosophila melanogaster]
           Length = 402
           
 Score =  451 bits (1147), Expect = e-126
 Identities = 227/373 (60%), Positives = 290/373 (76%), Gaps = 4/373 (1%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           + MNL+++LLRGIY YGFE PS+IQ RAI   + G+DVIAQAQSGTGKTATF+I +LQ I
Sbjct: 33  DDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQQI 92

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           D   ++ QALIL+PTRELA+QI +VV  LG+YM V++ A  GG  +++D + ++  GC  
Sbjct: 93  DTSIRECQALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILES-GCHV 151

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           V GTPGRV DMI ++ L+T+ +++ VLDEADE+LS   GFK QI D+F  LP + QV+++
Sbjct: 152 VVGTPGRVYDMINRK-LRTQYIKLFVLDEADEMLSR--GFKDQIQDVFKMLPPDVQVILL 208

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SATM  D+LEV+R FM DPV ILVK++E++LEGIKQ+ VNV +E WK  TLCD+YD+L+I
Sbjct: 209 SATMPPDVLEVSRCFMRDPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDTLSI 268

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
           TQ VIFCNT++KVD L+Q +   NF V +MHGDM+Q +R+ +M  FR+G SRVLI+TD+ 
Sbjct: 269 TQSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLL 328

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARGIDVQQVSLVINYDLP   ENYIHRIGR GRFGRKGVAINFIT  D   L++IE+FY 
Sbjct: 329 ARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIEQFYH 388

Query: 386 IKINPMPANFAEL 398
             I  MPAN A+L
Sbjct: 389 TTIEEMPANIADL 401


>gi|2500523|sp|P87206|IF4A_CANAL EUKARYOTIC INITIATION FACTOR 4A
           (EIF-4A) >gi|2190248|gnl|PID|d1021203 (D84472)
           translation initiation factor [Candida albicans]
           Length = 397
           
 Score =  450 bits (1146), Expect = e-126
 Identities = 221/373 (59%), Positives = 291/373 (77%), Gaps = 3/373 (0%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           + +NLK +++RGI+ YG+E PS+IQ RAI  I  G+DV+AQAQSGTGKTATFTI  LQ I
Sbjct: 26  DDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRI 85

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           +  +K  QALIL+PTRELA QI  V+  +G Y+ V   A  GG ++ DD++  +  G Q 
Sbjct: 86  NENEKATQALILAPTRELALQIKNVITAIGLYLKVTVHASIGGTSMSDDIEAFRS-GVQI 144

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           V GTPGRVLDMI+++  +T  V+M +LDEADE+LS   GFK+QIY+IF  LP+  Q+V++
Sbjct: 145 VVGTPGRVLDMIERRYFKTDKVKMFILDEADEMLSS--GFKEQIYNIFRLLPETTQIVLL 202

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SATM +D+LEVT KFMN+PV+ILVK+DE++LEGIKQ+ +NV+ E++KFD LCD+YDS+++
Sbjct: 203 SATMPQDVLEVTTKFMNNPVRILVKKDELTLEGIKQFYINVELEDYKFDCLCDLYDSISV 262

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
           TQ VIFCNT+ KV++L+ +L + +F V ++H D+ Q ERD +M +FR+G SR+LISTD+ 
Sbjct: 263 TQAVIFCNTRSKVEFLTNKLREQHFTVSAIHADLPQAERDTIMKEFRSGSSRILISTDLL 322

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARGIDVQQVSLVINYDLP   ENYIHRIGR GRFGRKGVAINF+T  D+  +REIEKFYS
Sbjct: 323 ARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDRDVGMMREIEKFYS 382

Query: 386 IKINPMPANFAEL 398
            +I  MPA+   L
Sbjct: 383 TQIEEMPADIGAL 395


>gi|2370593|emb|CAA73168| (Y12591) translation initiation factor
           eIF4A II [Xenopus laevis]
           Length = 413
           
 Score =  450 bits (1144), Expect = e-125
 Identities = 222/374 (59%), Positives = 287/374 (76%), Gaps = 3/374 (0%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           + M+L + LLRGIY+YGFE PS+IQ RAI   I G DVIAQAQSGTGKTATF I +LQ I
Sbjct: 41  DDMSLSESLLRGIYAYGFEKPSAIQQRAIMPCIKGYDVIAQAQSGTGKTATFAISILQQI 100

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           +L  K  QAL+L+PTRELA QI +VV  LGDYM  +  A  GG  ++ +++K+Q      
Sbjct: 101 ELDMKATQALMLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQSEAPHI 160

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAK-LPKNCQVVV 204
           + GTPGRV DM+ ++ L  + ++M VLDEADE+LS   GFK QIYDIF K L  N QVV+
Sbjct: 161 IVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR--GFKDQIYDIFQKVLSMNAQVVL 218

Query: 205 VSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLT 264
           +SATM  D+LEVT+KFM DP++ILVK++E++LEGI+Q+ +NV++EEWK DTLCD+Y++LT
Sbjct: 219 LSATMPADVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 278

Query: 265 ITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDV 324
           ITQ VIF NT++KVDWL++++   +F V ++HGDM Q+ERD +M +FR+G SRVLI+TD+
Sbjct: 279 ITQAVIFINTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDL 338

Query: 325 WARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFY 384
            ARGIDVQQVSLVINYDLP   ENYIHRIGR GRFG KGVAIN +T+ D   L++IE FY
Sbjct: 339 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGWKGVAINMVTEDDKRTLKDIETFY 398

Query: 385 SIKINPMPANFAEL 398
           +  +  MP N A+L
Sbjct: 399 NTTVEEMPMNVADL 412


>gi|3097266|emb|CAA76677| (Y17186) translation initiation factor
           [Pisum sativum]
           Length = 407
           
 Score =  449 bits (1143), Expect = e-125
 Identities = 219/374 (58%), Positives = 295/374 (78%), Gaps = 4/374 (1%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           E M +K+DLLRGIY+YGFE PS+IQ RA+  II G+DVIAQAQSGTGKT+   + + Q +
Sbjct: 36  EGMGIKEDLLRGIYAYGFEKPSAIQQRAVAPIIQGRDVIAQAQSGTGKTSMIALTVCQVV 95

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           D   +++QALI+SPTRELA+Q  +V+  +GD++N+ A A  GGK++ +D++K++ HG   
Sbjct: 96  DTSVREVQALIVSPTRELATQTEKVILAIGDHINIQAHACIGGKSVGEDIRKLE-HGVHV 154

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           VSGTPGRV DMIK++ L+TR +++LVLDE+DE+LS   GFK QIYD++  LP + QV ++
Sbjct: 155 VSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSR--GFKDQIYDVYRYLPPDLQVCLI 212

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           S T+  +ILE+T KFM DPV+ILVKRDE++LEGIKQ+ V V+KE+WKFDTLC I+  L+ 
Sbjct: 213 SRTLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCVIFMILSP 272

Query: 266 TQCVIFC-NTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDV 324
           +  +++  NTK+KVDWL++++  +NF V SMHGDM Q+ERD +M +FR G +RVLI+TDV
Sbjct: 273 SLKLLYSVNTKRKVDWLTEKMRNNNFTVSSMHGDMPQKERDAIMGEFRAGTTRVLITTDV 332

Query: 325 WARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFY 384
           WARG+DVQQVSLVINYDLP   E YIHRIGRSGRFGRKGVAINF+   D+  LR+IE++Y
Sbjct: 333 WARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYY 392

Query: 385 SIKINPMPANFAEL 398
           S +I+ MP N  +L
Sbjct: 393 STQIDEMPMNIGDL 406


>gi|446778|prf||1912301A initiation factor eIF-4A [Drosophila
           melanogaster]
           Length = 402
           
 Score =  448 bits (1141), Expect = e-125
 Identities = 226/373 (60%), Positives = 289/373 (76%), Gaps = 4/373 (1%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           + MNL+++LLRGIY YGFE PS+IQ RAI   + G+DVIAQAQSGTGKTATF+I +LQ I
Sbjct: 33  DDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQQI 92

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           D   ++ QALIL+PTRELA+QI +VV  LG+YM V++ A  GG  +++D + ++  GC  
Sbjct: 93  DTSIRECQALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILES-GCHV 151

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           V GTPGRV DMI ++ L+T+ +++ VLDEADE+LS   GFK QI D+F  LP + QV+++
Sbjct: 152 VVGTPGRVYDMINRK-LRTQYIKLFVLDEADEMLSR--GFKDQIQDVFKMLPPDVQVILL 208

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SATM  D+LEV+R FM DPV ILVK++E++LEGIKQ+ VNV +E WK  TLCD+YD+L+I
Sbjct: 209 SATMPPDVLEVSRCFMRDPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDTLSI 268

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
           TQ VIFC T++KVD L+Q +   NF V +MHGDM+Q +R+ +M  FR+G SRVLI+TD+ 
Sbjct: 269 TQSVIFCTTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLL 328

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARGIDVQQVSLVINYDLP   ENYIHRIGR GRFGRKGVAINFIT  D   L++IE+FY 
Sbjct: 329 ARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIEQFYH 388

Query: 386 IKINPMPANFAEL 398
             I  MPAN A+L
Sbjct: 389 TTIEEMPANIADL 401


>gi|1170511|sp|P41382|IF4U_TOBAC EUKARYOTIC INITIATION FACTOR 4A-10
           (EIF-4A-10) >gi|1362118|pir||S55898 translation
           initiation factor eIF-4A.10 - common tobacco
           >gi|475213|emb|CAA55642| (X79009) translation initiation
           factor (eIF-4A) [Nicotiana tabacum]
           >gi|475216|emb|CAA55641| (X79008) translation initiation
           factor (eIF-4A) [Nicotiana tabacum]
           Length = 413
           
 Score =  447 bits (1138), Expect = e-125
 Identities = 223/373 (59%), Positives = 284/373 (75%), Gaps = 3/373 (0%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           ++M L+++LLRGIY+YGFE PS+IQ R I     G DVI QAQSGTGKTATF  G+LQ +
Sbjct: 43  DAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQL 102

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           D    + QAL+L+PTRELA QI +V++ LGDY+ V   A  GG ++++D + +Q  G   
Sbjct: 103 DYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQS-GVHV 161

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           V GTPGRV DM+++Q L+  +++M VLDEADE+LS   GFK QIYDIF  LP   QV V 
Sbjct: 162 VVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSR--GFKDQIYDIFQLLPPKIQVGVF 219

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SATM  + LE+TRKFMN PV+ILVKRD+++LEGIKQ+ VNVDKEEWK +TLCD+Y++L I
Sbjct: 220 SATMPPEALEITRKFMNKPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLCDLYETLAI 279

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
           TQ VIF NT++KVDWL+ ++   +  V + HGDM Q  RD +M +FR+G SRVLI+TD+ 
Sbjct: 280 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 339

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARGIDVQQVSLVINYDLP   ENY+HRIGRSGRFGRKGVAINF+TK D   L +I+KFY+
Sbjct: 340 ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLSDIQKFYN 399

Query: 386 IKINPMPANFAEL 398
           + I  +PAN A+L
Sbjct: 400 VVIEELPANVADL 412


>gi|2500517|sp|Q40471|IF49_TOBAC EUKARYOTIC INITIATION FACTOR 4A-9
           (EIF-4A-9) >gi|485951|emb|CAA55736| (X79135) NeIF-4A9
           [Nicotiana tabacum]
           Length = 413
           
 Score =  446 bits (1136), Expect = e-125
 Identities = 222/373 (59%), Positives = 283/373 (75%), Gaps = 3/373 (0%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           ++M LK++LLRGIY+YGFE PS+IQ R I     G DVI QAQSGTGKTATF  G+LQ +
Sbjct: 43  DAMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL 102

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           D    D QAL+L+PTRELA QI +V++ LGDY+ V   A  GG ++++D +++   G   
Sbjct: 103 DYELLDCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED-QRILSSGVHV 161

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           V GTPGRV DM+++Q L+  +++M VLDEADE+LS   GFK QIYDIF  LP   QV V 
Sbjct: 162 VVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSR--GFKDQIYDIFQLLPPKIQVGVF 219

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SATM  + LE+TRKFMN PV+ILVKRDE++LEGIKQ+ VNVDKEEWK +TLCD+Y++L I
Sbjct: 220 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAI 279

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
           TQ VIF NT++KVDWL+ ++   +  V + HGDM Q  RD +M +FR+G SRVLI+TD+ 
Sbjct: 280 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 339

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARGIDVQQVSLVINYDLP   ENY+HRIGRSGRFGRKGV+INF+T  D   L +I++FY+
Sbjct: 340 ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVSINFVTSDDERMLSDIQRFYN 399

Query: 386 IKINPMPANFAEL 398
           + I  +PAN A+L
Sbjct: 400 VVIEELPANVADL 412


>gi|2500518|sp|Q40465|IF4V_TOBAC EUKARYOTIC INITIATION FACTOR 4A-11
           (EIF-4A-11) >gi|485987|emb|CAA55737| (X79136) NeIF-4A11
           [Nicotiana tabacum]
           Length = 413
           
 Score =  446 bits (1134), Expect = e-124
 Identities = 223/373 (59%), Positives = 283/373 (75%), Gaps = 3/373 (0%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           ++M L+++LLRGIY+YGFE PS+IQ R I     G DVI QAQSGTGKTATF  G+LQ +
Sbjct: 43  DAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL 102

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           D    + QAL+L+PTRELA QI +V++ LGDY+ V   A  GG ++++D + +Q  G   
Sbjct: 103 DYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQS-GVHV 161

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           V GTPGRV DM+++Q L+  N++M VLDEADE+LS   GFK QIYDIF  LP   QV V 
Sbjct: 162 VVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSR--GFKDQIYDIFQLLPPKIQVGVF 219

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SATM  + LE+TRKFMN PV+ILVKRDE++LEGIKQ+ VNVDKEEWK +TLCD+Y++L I
Sbjct: 220 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAI 279

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
           TQ VIF NT++KVDWL+ ++   +  V + HGDM Q  RD +M +FR+G SRVLI+TD+ 
Sbjct: 280 TQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 339

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARGIDVQQVSLVINYDLP   ENY+HRIG SGRFGRKGV+INF+TK D   L +I+KFY+
Sbjct: 340 ARGIDVQQVSLVINYDLPTQPENYLHRIGHSGRFGRKGVSINFVTKDDERMLFDIQKFYN 399

Query: 386 IKINPMPANFAEL 398
           + I  +PAN A+L
Sbjct: 400 VVIEELPANVADL 412


>gi|2119938|pir||S52023 translation initiation factor eIF-4A.14 -
           common tobacco
           Length = 413
           
 Score =  446 bits (1134), Expect = e-124
 Identities = 223/373 (59%), Positives = 284/373 (75%), Gaps = 3/373 (0%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           ++M L+++LLRGIY+YGFE PS+IQ R I     G DVI QAQSGTGKTATF  G+LQ +
Sbjct: 43  DAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQL 102

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           D    + QAL+L+PTRELA QI +V++ LGDY+ V   A  GG ++++D + +Q  G   
Sbjct: 103 DYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQS-GVHV 161

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           V GTPGRV DM+++Q L+  +++M VLDEADE+LS   GFK QIYDIF  LP   QV V 
Sbjct: 162 VVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSR--GFKDQIYDIFQLLPPKIQVGVF 219

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SATM  + LE+TRKFM+ PV+ILVKRDE++LEGIKQ+ VNVDKEEWK +TLCD+Y++L I
Sbjct: 220 SATMPPEALEITRKFMSKPVRILVKRDEVTLEGIKQFYVNVDKEEWKLETLCDLYETLAI 279

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
           TQ VIF NT++KVDWL+ ++   +  V + HGDM Q  RD +M +FR+G SRVLI+TD+ 
Sbjct: 280 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 339

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARGIDVQQVSLVINYDLP   ENY+HRIGRSGRFGRKGVAINF+TK D   L +I+KFY+
Sbjct: 340 ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYN 399

Query: 386 IKINPMPANFAEL 398
           + I  +PAN A+L
Sbjct: 400 VVIEELPANVADL 412


>gi|2119933|pir||S52018 translation initiation factor eIF-4A.11 -
           common tobacco
           Length = 413
           
 Score =  445 bits (1133), Expect = e-124
 Identities = 223/373 (59%), Positives = 283/373 (75%), Gaps = 3/373 (0%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           ++M L+++LLRGIY+YGFE PS+IQ R I     G DVI QAQSGTGKTATF  G+LQ +
Sbjct: 43  DAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQL 102

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           D    + QAL+L+PTRELA QI +V++ LGDY+ V   A  GG ++++D + +Q  G   
Sbjct: 103 DYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQS-GVHV 161

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           V GTPGRV DM+++Q L+  N++M VLDEADE+LS   GFK QIYDIF  LP   QV V 
Sbjct: 162 VVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSR--GFKDQIYDIFQLLPPKIQVGVF 219

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SATM  + LE+TRKFMN PV+ILVKRDE++LEGIKQ+ VNVDKEEWK +TLCD+Y++L I
Sbjct: 220 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAI 279

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
           TQ VIF NT++KVDWL+ ++   +  V + HGDM Q  RD +M +FR+G SRVLI+TD+ 
Sbjct: 280 TQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 339

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARGIDVQQVSLVINYDLP   ENY+HRIG SGRFGRKGV+INF+TK D   L +I+KFY+
Sbjct: 340 ARGIDVQQVSLVINYDLPTQPENYLHRIGHSGRFGRKGVSINFVTKDDERMLFDIQKFYN 399

Query: 386 IKINPMPANFAEL 398
           + I  +PAN A+L
Sbjct: 400 VVIEELPANVADL 412


>gi|2341061 (U73459) translational initiation factor eIF-4A [Zea
           mays]
           Length = 414
           
 Score =  445 bits (1132), Expect = e-124
 Identities = 222/373 (59%), Positives = 283/373 (75%), Gaps = 3/373 (0%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           + M L+++LLRGIY+YGFE PS+IQ R I     G DVI QAQSGTGKTATF  G+LQ +
Sbjct: 44  DDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL 103

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           D    + QAL+L+PTRELA QI +V++ LGDY+ V   A  GG ++++D +++   G   
Sbjct: 104 DYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED-QRILASGVHV 162

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           V GTPGRV DM+++Q L+  N++M VLDEADE+LS   GFK QIYDIF  LP   QV V 
Sbjct: 163 VVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSR--GFKDQIYDIFQLLPSKIQVGVF 220

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SATM  + LE+TRKFMN PV+ILVKRDE++LEGIKQ+ VNVDKE+WK DTLCD+Y++L I
Sbjct: 221 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLDTLCDLYETLAI 280

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
           TQ VIF NT++KVDWL+ ++   +  V + HGDM Q  RD +M +FR+G SRVLI+TD+ 
Sbjct: 281 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 340

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARGIDVQQVSLVINYDLP   ENY+HRIGRSGRFGRKGVAINF+T+ +   L +I+KFY+
Sbjct: 341 ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDNERMLFDIQKFYN 400

Query: 386 IKINPMPANFAEL 398
           + I  +PAN A+L
Sbjct: 401 VLIEELPANVADL 413


>gi|2500520|sp|Q40467|IF4Y_TOBAC EUKARYOTIC INITIATION FACTOR 4A-14
           (EIF-4A-14) >gi|485943|emb|CAA55742| (X79141) NeIF-4A14
           [Nicotiana tabacum]
           Length = 413
           
 Score =  444 bits (1131), Expect = e-124
 Identities = 222/373 (59%), Positives = 284/373 (75%), Gaps = 3/373 (0%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           ++M L+++LLRGIY+YGFE PS+IQ R I     G DVI QAQSGTGKTATF  G+LQ +
Sbjct: 43  DAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQL 102

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           D    + QAL+L+PTRELA QI +V++ LGDY+ V   A  GG ++++D + +Q  G   
Sbjct: 103 DYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQS-GVHV 161

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           V GTPGRV DM+++Q L+  +++M VLDEADE+LS   GFK QIYDIF  LP   QV V 
Sbjct: 162 VVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSR--GFKDQIYDIFQLLPPKIQVGVF 219

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SATM  + LE+TRKFM+ PV+ILVKRD+++LEGIKQ+ VNVDKEEWK +TLCD+Y++L I
Sbjct: 220 SATMPPEALEITRKFMSKPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLCDLYETLAI 279

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
           TQ VIF NT++KVDWL+ ++   +  V + HGDM Q  RD +M +FR+G SRVLI+TD+ 
Sbjct: 280 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 339

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARGIDVQQVSLVINYDLP   ENY+HRIGRSGRFGRKGVAINF+TK D   L +I+KFY+
Sbjct: 340 ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYN 399

Query: 386 IKINPMPANFAEL 398
           + I  +PAN A+L
Sbjct: 400 VVIEELPANVADL 412


>gi|2500522|sp|Q41741|IF4A_MAIZE EUKARYOTIC INITIATION FACTOR 4A
           (EIF-4A) >gi|603190 (U17979) translation initiation
           factor eIF-4A [Zea mays]
           Length = 410
           
 Score =  444 bits (1131), Expect = e-124
 Identities = 219/373 (58%), Positives = 284/373 (75%), Gaps = 3/373 (0%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           +SM L+++LLRGIY+YGFE PS+IQ R I     G DVI QAQSGTGKTATF  G+LQ +
Sbjct: 40  DSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL 99

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           D    + QAL+L+PTRELA QI +V++ LGDY+ V   A  GG ++++D +++   G   
Sbjct: 100 DYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED-QRILASGVHV 158

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           V GTPGRV DM+++Q L+  N++M VLDEADE+LS   GFK QIYDIF  LP   QV V 
Sbjct: 159 VVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSR--GFKDQIYDIFQLLPSKIQVGVF 216

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SATM  + LE+TRKFMN PV+ILVKRDE++LEGIKQ+ VN+DKE+WK DTLCD+Y++L I
Sbjct: 217 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNIDKEDWKLDTLCDLYETLAI 276

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
           TQ VIF NT++KVDWL+ ++   +  V + HGDM Q  RD +M +FR+G SRVLI+TD+ 
Sbjct: 277 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 336

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARGIDVQQVSLVINYDLP   ENY+HRIGRSGRFGRKGVAINF+T+ D   + ++++FY+
Sbjct: 337 ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERIVFDVQRFYN 396

Query: 386 IKINPMPANFAEL 398
           + +  +PAN A+L
Sbjct: 397 VTVEELPANVADL 409


>gi|2119934|pir||S52019 translation initiation factor eIF-4A.7 -
           common tobacco
           Length = 413
           
 Score =  444 bits (1131), Expect = e-124
 Identities = 222/373 (59%), Positives = 283/373 (75%), Gaps = 3/373 (0%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           ++M L+++LLRGIY+YGFE PS+IQ R I     G DVI QAQSGTGKTATF  G+LQ +
Sbjct: 43  DAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQL 102

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           D    + QAL+L+PTRELA QI +V++ LGDY+ V   A  GG ++++D + +Q  G   
Sbjct: 103 DYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQS-GVHV 161

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           V GTPGRV DM+++Q L+  +++M VLDEADE+LS   GFK QIYDIF  LP   QV V 
Sbjct: 162 VVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSR--GFKDQIYDIFQLLPPKIQVGVF 219

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SATM  + LE+TRKFMN PV+ILVKRDE++LEGIKQ+ VNVDKEEWK +TLCD+Y++L I
Sbjct: 220 SATMPPEALEITRKFMNKPVRILVKRDEVTLEGIKQFYVNVDKEEWKLETLCDLYETLAI 279

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
           TQ VIF NT++KVDWL+ ++   +  V + HGDM Q  RD +M +FR+G SRVLI+TD+ 
Sbjct: 280 TQSVIFVNTRRKVDWLTDKMRTRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 339

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARGIDVQQVSLVINYDLP   ENY+HRIGRSGRFGRKGVAINF+ K D   L +I++FY+
Sbjct: 340 ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVIKDDERMLSDIQRFYN 399

Query: 386 IKINPMPANFAEL 398
           + I  +PAN A+L
Sbjct: 400 VVIEELPANVADL 412


>gi|2119932|pir||S52017 translation initiation factor eIF-4A.9 -
           common tobacco
           Length = 413
           
 Score =  444 bits (1131), Expect = e-124
 Identities = 221/373 (59%), Positives = 283/373 (75%), Gaps = 3/373 (0%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           ++M LK++LLRGIY+YGFE PS+IQ R I     G DVI QAQSGTGKTATF  G+LQ +
Sbjct: 43  DAMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQL 102

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           D    + QAL+L+PTRELA QI +V++ LGDY+ V   A  GG ++++D +++   G   
Sbjct: 103 DYELLECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED-QRILSSGVHV 161

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           V GTPGRV DM+++Q L+  +++M VLDEADE+LS   GFK QIYDIF  LP   QV V 
Sbjct: 162 VVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSR--GFKDQIYDIFQLLPPKIQVGVF 219

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SATM  + LE+TRKFMN PV+ILVKRDE++LEGIKQ+ VNVDKEEWK +TLCD+Y++L I
Sbjct: 220 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAI 279

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
           TQ VIF NT++KVDWL+ ++   +  V + HGDM Q  RD +M +FR+G SRVLI+TD+ 
Sbjct: 280 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 339

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARGIDVQQVSLVINYDLP   ENY+HRIGRSGRFGRKGV+INF+T  D   L +I++FY+
Sbjct: 340 ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVSINFVTSDDERMLSDIQRFYN 399

Query: 386 IKINPMPANFAEL 398
           + I  +PAN A+L
Sbjct: 400 VVIEELPANVADL 412


>gi|1170506|sp|P41379|IF42_NICPL EUKARYOTIC INITIATION FACTOR 4A-2
           (EIF-4A-2) >gi|100275|pir||S22578 translation initiation
           factor eIF-4A - curled-leaved tobacco
           >gi|19697|emb|CAA43513| (X61205) nicotiana eukaryotic
           translation initiation factor 4A [Nicotiana
           plumbaginifolia]
           Length = 413
           
 Score =  444 bits (1130), Expect = e-124
 Identities = 223/373 (59%), Positives = 283/373 (75%), Gaps = 3/373 (0%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           ++M L+++LLRGIY+YGFE PS+IQ R I     G DVI QAQSGTGKTATF  G+LQ +
Sbjct: 43  DAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQL 102

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           D    + QAL+L+PTRELA QI +V++ LGDY+ V   A  GG ++++D + +Q  G   
Sbjct: 103 DYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQS-GVHV 161

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           V GTPGRV DM+++Q L+  +++M VLDEADE+LS   GFK QIYDIF  LP   QV V 
Sbjct: 162 VVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSR--GFKDQIYDIFQLLPPKIQVGVF 219

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SATM  + LE+TRKFMN PV+ILVKRDE++LEGIKQ+ VNVDKEEWK +TLCD+Y++L I
Sbjct: 220 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAI 279

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
           TQ VIF NT++KVDWL+ ++   +  V + HGDM Q  RD +M +FR+G SRVLI+TD+ 
Sbjct: 280 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 339

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARGIDVQQVSLVINYDLP   ENY+HRIGRSGRFGRKGVAIN +TK D   L +I+KFY+
Sbjct: 340 ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINSVTKDDERMLFDIQKFYN 399

Query: 386 IKINPMPANFAEL 398
           + I  +PAN A+L
Sbjct: 400 VVIEELPANVADL 412


>gi|2286151 (AF007580) translation initiation factor [Zea mays]
           Length = 414
           
 Score =  443 bits (1128), Expect = e-124
 Identities = 222/373 (59%), Positives = 282/373 (75%), Gaps = 3/373 (0%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           + M L+++LLRGIY YGFE PS+IQ R I     G DVI QAQSGTGKTATF  G+LQ +
Sbjct: 44  DDMGLQENLLRGIYRYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL 103

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           D    + QAL+L+PTRELA QI +V++ LGDY+ V   A  GG ++++D +++   G   
Sbjct: 104 DYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED-QRILGSGVHV 162

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           V GTPGRV DM+++Q L+  N++M VLDEADE+LS   GFK QIYDIF  LP   QV V 
Sbjct: 163 VVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSR--GFKDQIYDIFQLLPAKIQVGVF 220

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SATM  + LE+TRKFMN PV+ILVKRDE++LEGIKQ+ VNVDKE+WK DTLCD+Y++L I
Sbjct: 221 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLDTLCDLYETLAI 280

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
           TQ VIF NT++KVDWL+ ++   +  V + HGDM Q  RD +M +FR+G SRVLI+TD+ 
Sbjct: 281 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 340

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARGIDVQQVSLVINYDLP   ENY+HRIGRSGRFGRKGVAINF+T+ D   + +I+KFY+
Sbjct: 341 ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERIVFDIQKFYN 400

Query: 386 IKINPMPANFAEL 398
           + I  +PAN A+L
Sbjct: 401 VLIEELPANVADL 413


>gi|2500516|sp|Q40470|IF47_TOBAC EUKARYOTIC INITIATION FACTOR 4A-7
           (EIF-4A-7) >gi|485949|emb|CAA55738| (X79137) NeIF-4A7
           [Nicotiana tabacum]
           Length = 413
           
 Score =  443 bits (1128), Expect = e-124
 Identities = 221/373 (59%), Positives = 283/373 (75%), Gaps = 3/373 (0%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           ++M L+++LLRGIY+YGFE PS+IQ R I     G DVI QAQSGTGKTATF  G+LQ +
Sbjct: 43  DAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQL 102

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           D    + QAL+L+PTRELA QI +V++ LGDY+ V   A  GG ++++D + +Q  G   
Sbjct: 103 DYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQS-GVHV 161

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           V GTPGRV DM+++Q L+  +++M VLDEADE+LS   GFK QIYDIF  LP   QV V 
Sbjct: 162 VVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSR--GFKDQIYDIFQLLPPKIQVGVF 219

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SATM  + LE+TRKFMN PV+ILVKRD+++LEGIKQ+ VNVDKEEWK +TLCD+Y++L I
Sbjct: 220 SATMPPEALEITRKFMNKPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLCDLYETLAI 279

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
           TQ VIF NT++KVDWL+ ++   +  V + HGDM Q  RD +M +FR+G SRVLI+TD+ 
Sbjct: 280 TQSVIFVNTRRKVDWLTDKMRTRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 339

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARGIDVQQVSLVINYDLP   ENY+HRIGRSGRFGRKGVAINF+ K D   L +I++FY+
Sbjct: 340 ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVIKDDERMLSDIQRFYN 399

Query: 386 IKINPMPANFAEL 398
           + I  +PAN A+L
Sbjct: 400 VVIEELPANVADL 412


>gi|2119935|pir||S52020 translation initiation factor eIF-4A.15 -
           common tobacco
           Length = 413
           
 Score =  443 bits (1126), Expect = e-123
 Identities = 221/373 (59%), Positives = 283/373 (75%), Gaps = 3/373 (0%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           ++M L+++LLRGIY+YGFE PS+IQ R I     G DVI QAQSGTGKTATF  G+LQ +
Sbjct: 43  DAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQL 102

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
                + QAL+L+PTRELA QI +V++ LGDY+ V   A  GG ++++D +++   G   
Sbjct: 103 AYELLECQALVLAPTRELAQQIEKVMRALGDYLGVKVTACVGGTSVRED-QRILSSGVHV 161

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           V GTPGRV DM+++Q L+  +++M VLDEADE+LS   GFK QIYDIF  LP   QV V 
Sbjct: 162 VVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSR--GFKDQIYDIFQLLPPKIQVGVF 219

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SATM  + LE+TRKFMN PV+ILVKRDE++LEGIKQ+ VNVDKEEWK +TLCD+Y++L I
Sbjct: 220 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAI 279

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
           TQ VIF NT++KVDWL+ ++   +  V + HGDM Q  RD +M +FR+G SRVLI+TD+ 
Sbjct: 280 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 339

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARGIDVQQVSLVINYDLP   ENY+HRIGRSGRFGRKGVAINF+TK D   L +I++FY+
Sbjct: 340 ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLSDIQRFYN 399

Query: 386 IKINPMPANFAEL 398
           + I  +PAN A+L
Sbjct: 400 VVIEELPANVADL 412


>gi|1170509|sp|P41378|IF4A_WHEAT EUKARYOTIC INITIATION FACTOR 4A
           (EIF-4A) >gi|478306|pir||JN0839 translation initiation
           factor eIF-4A - wheat
           Length = 414
           
 Score =  442 bits (1125), Expect = e-123
 Identities = 222/373 (59%), Positives = 282/373 (75%), Gaps = 3/373 (0%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           + M L+++LLRGIY+YGFE PS+IQ R I     G DVI QAQSGTGKTATF  G+LQ +
Sbjct: 44  DDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL 103

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           D    + QAL+L+PTRELA QI +V++ LGDY+ V   A  GG ++++D +++   G   
Sbjct: 104 DYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED-QRILASGVHV 162

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           V GTPGRV D++++Q L+  N++M VLDEADE+LS   GFK QIYDIF  LP   QV V 
Sbjct: 163 VVGTPGRVFDIVRRQSLRPDNIKMFVLDEADEMLSR--GFKDQIYDIFQLLPGKIQVGVF 220

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SATM  + LE+TRKFMN PV+ILVKRDE++LEGIKQ+ VNV+KEEWK DTLCD+Y++L I
Sbjct: 221 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLAI 280

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
           TQ VIF NT++KVDWL+ ++   +  V + HGDM Q  RD +M +FR+G SRVLI+TD+ 
Sbjct: 281 TQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 340

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARGIDVQQVSLVINYDLP   ENY HRIGRSGRFGRKGVAINF+T+ D   L +I+KFY+
Sbjct: 341 ARGIDVQQVSLVINYDLPTQPENYQHRIGRSGRFGRKGVAINFVTREDERMLFDIQKFYN 400

Query: 386 IKINPMPANFAEL 398
           + I  +PAN A+L
Sbjct: 401 VVIEELPANVADL 413


>gi|1170503|sp|P41376|IF41_ARATH EUKARYOTIC INITIATION FACTOR 4A-1
           (EIF-4A-1) >gi|322503|pir||JC1452 translation initiation
           factor eIF-4A1 - Arabidopsis thaliana
           >gi|16554|emb|CAA46188| (X65052) eukaryotic translation 
           initiation factor 4A-1 [Arabidopsis thaliana]
           Length = 412
           
 Score =  442 bits (1124), Expect = e-123
 Identities = 220/373 (58%), Positives = 283/373 (74%), Gaps = 3/373 (0%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           ++M L+++LLRGIY+YGFE PS+IQ R I     G DVI QAQSGTGKTATF  G+LQ +
Sbjct: 42  DAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQL 101

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           D      QAL+L+PTRELA QI +V++ LGDY+ V   A  GG ++++D + +Q  G   
Sbjct: 102 DFSLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA-GVHV 160

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           V GTPGRV DM+K+Q L+  N++M VLDEADE+LS   GFK QIYDIF  LP   QV V 
Sbjct: 161 VVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSR--GFKDQIYDIFQLLPPKIQVGVF 218

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SATM  + LE+TRKFM+ PV+ILVKRDE++LEGIKQ+ VNV+KEEWK +TLCD+Y++L I
Sbjct: 219 SATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAI 278

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
           TQ VIF NT++KVDWL+ ++   +  V + HGDM Q  RD +M +FR+G SRVLI+TD+ 
Sbjct: 279 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 338

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARGIDVQQVSLVIN+DLP   ENY+HRIGRSGRFGRKGVAINF+T+ D   L +I+KFY+
Sbjct: 339 ARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 398

Query: 386 IKINPMPANFAEL 398
           + +  +P+N A+L
Sbjct: 399 VVVEELPSNVADL 411


>gi|2500521|sp|Q40468|IF4Z_TOBAC EUKARYOTIC INITIATION FACTOR 4A-15
           (EIF-4A-15) >gi|485945|emb|CAA55739| (X79138) NeIF-4A15
           [Nicotiana tabacum]
           Length = 413
           
 Score =  441 bits (1123), Expect = e-123
 Identities = 220/373 (58%), Positives = 283/373 (74%), Gaps = 3/373 (0%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           ++M L+++LLRGIY+YGFE PS+IQ R I     G DVI QAQSGTGKTATF  G+LQ +
Sbjct: 43  DAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL 102

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
                + QAL+L+PTRELA QI +V++ LGDY+ V   A  GG ++++D +++   G   
Sbjct: 103 AYELLECQALVLAPTRELAQQIEKVMRALGDYLGVKVTACVGGTSVRED-QRILSSGVHV 161

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           V GTPGRV DM+++Q L+  +++M VLDEADE+LS   GFK QIYDIF  LP   QV V 
Sbjct: 162 VVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSR--GFKDQIYDIFQLLPPKIQVGVF 219

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SATM  + LE+TRKFMN PV+ILVKRDE++LEGIKQ+ VNVDKEEWK +TLCD+Y++L I
Sbjct: 220 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAI 279

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
           TQ VIF NT++KVDWL+ ++   +  V + HGDM Q  RD +M +FR+G SRVLI+TD+ 
Sbjct: 280 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 339

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARGIDVQQVSLVIN+DLP   ENY+HRIGRSGRFGRKGVAINF+TK D   L +I++FY+
Sbjct: 340 ARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLSDIQRFYN 399

Query: 386 IKINPMPANFAEL 398
           + I  +PAN A+L
Sbjct: 400 VVIEELPANVADL 412


>gi|3776021|emb|CAA09211| (AJ010472) RNA helicase [Arabidopsis
           thaliana]
           Length = 441
           
 Score =  441 bits (1122), Expect = e-123
 Identities = 219/373 (58%), Positives = 282/373 (74%), Gaps = 3/373 (0%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           ++M L+ DLLRGIY+YGFE PS+IQ R I     G DVI QAQSGTGKTATF  G+LQ +
Sbjct: 71  DAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQL 130

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           D+     QAL+L+PTRELA QI +V++ LGDY+ V A A  GG ++++D + +Q  G   
Sbjct: 131 DISLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQS-GVHV 189

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           V GTPGRV D++++Q L+   ++M VLDEADE+LS   GFK QIYDIF  LP   QV V 
Sbjct: 190 VVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSR--GFKDQIYDIFQLLPSKVQVGVF 247

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SATM  + LE+TRKFMN PV+ILVKRDE++LEGIKQ+ VNVDKEEWK +TLCD+Y++L I
Sbjct: 248 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAI 307

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
           TQ VIF NT++KVDWL+ ++   +  V + HGDM Q  RD +M +FR+G SRVLI+TD+ 
Sbjct: 308 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 367

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARGIDVQQVSLVIN+DLP   ENY+HRIGRSGRFGRKGVAINF+T  D   + +I++FY+
Sbjct: 368 ARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSEDERMMADIQRFYN 427

Query: 386 IKINPMPANFAEL 398
           + +  +P+N A+L
Sbjct: 428 VVVEELPSNVADL 440


>gi|1170508|sp|P41381|IF48_TOBAC EUKARYOTIC INITIATION FACTOR 4A-8
           (EIF-4A-8) >gi|2119931|pir||S60244 translation
           initiation factor eIF-4A.8, anther-specific - common
           tobacco >gi|475219|emb|CAA55639| (X79004) translation
           initiation factor (eIF-4A) [Nicotiana tabacum]
           >gi|475221|emb|CAA55640| (X79005) translation initiation
           factor (eIF-4A) [Nicotiana tabacum]
           Length = 413
           
 Score =  437 bits (1112), Expect = e-122
 Identities = 219/373 (58%), Positives = 281/373 (74%), Gaps = 3/373 (0%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           ++M L+++LLRGIY+YGFE PS+IQ R I     G DVI QAQSGTGKTATF  G+LQ +
Sbjct: 43  DAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL 102

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           D      QAL+L+PTRELA QI +V++ LGDY+ V   A  GG ++++D +++   G   
Sbjct: 103 DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED-QRILAAGVHV 161

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           + GTPGRV DM+++Q L+   ++M VLDEADE+LS   GFK QIYDIF  LP   QV V 
Sbjct: 162 IVGTPGRVFDMLRRQSLRPDYLRMFVLDEADEMLSR--GFKDQIYDIFQMLPTKVQVGVF 219

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SATM  + L++TRKFMN PV+ILVKRDE++LEGIKQ+ VNVDKEEWK +TLCD+Y++L I
Sbjct: 220 SATMPPEALDITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAI 279

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
           TQ VIF NT++KVDWL+ ++   +  V + HGDM Q  RD +M +FR+G SRVLI+TD+ 
Sbjct: 280 TQSVIFVNTRRKVDWLTDKMRTRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 339

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARGIDVQQVSLVINYDLP   ENY+HRIGRSGRFGRKGVAINF+T  D   L +I+KFY+
Sbjct: 340 ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDERMLFDIQKFYN 399

Query: 386 IKINPMPANFAEL 398
           + I  +P+N A+L
Sbjct: 400 VIIEELPSNVADL 412


>gi|547712|sp|P35683|IF4A_ORYSA EUKARYOTIC INITIATION FACTOR 4A
           (EIF-4A) >gi|542153|pir||S38358 translation initiation
           factor eIF-4A - rice >gi|303844|gnl|PID|d1002642
           (D12627) eukaryotic initiation factor 4A [Oryza sativa]
           Length = 413
           
 Score =  436 bits (1110), Expect = e-121
 Identities = 221/373 (59%), Positives = 281/373 (75%), Gaps = 4/373 (1%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           + M L+++LLRGIY+YGFE PS+IQ R I     G DVI QAQSGTGKTATF  G+LQ +
Sbjct: 44  DDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL 103

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           D    + QAL+L+PTRELA QI +V++ LGDY+ V   A  GG ++++D +++   G   
Sbjct: 104 DYAVVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED-QRILASGVHV 162

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           V GTPGRV DM+++Q L+   ++M VLDEADE+LS   GFK QIYDIF  LP   QV V 
Sbjct: 163 VVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSR--GFKDQIYDIFQLLPSKIQVGVF 220

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SATM  + LE+TRKFMN PV+ILVKRDE++LEGIKQ+ VNV+KEEWK DTLCD+Y++L I
Sbjct: 221 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLAI 280

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
           TQ VIF NT+K VDWL+ ++   +  V + HGDM Q  RD +M +FR+G SRVLI+TD+ 
Sbjct: 281 TQSVIFVNTRK-VDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 339

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARGIDVQQVSLVINYDLP   ENY+HRIGRSGRFGRKGVAINF+T+ D   L +I++FY+
Sbjct: 340 ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYN 399

Query: 386 IKINPMPANFAEL 398
           + I  +PAN A+L
Sbjct: 400 VVIEELPANVADL 412


>gi|1170505|sp|P41377|IF42_ARATH EUKARYOTIC INITIATION FACTOR 4A-2
           (EIF-4A-2) >gi|322504|pir||JC1453 translation initiation
           factor eIF-4A2 - Arabidopsis thaliana
           >gi|16556|emb|CAA46189| (X65053) eukaryotic translation 
           initiation factor 4A-2 [Arabidopsis thaliana]
           Length = 412
           
 Score =  434 bits (1103), Expect = e-121
 Identities = 217/373 (58%), Positives = 280/373 (74%), Gaps = 3/373 (0%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           ++M L+++LLRGIY+YGFE PS+IQ R I     G DVI QAQSGTGKTATF  G+LQ +
Sbjct: 42  DAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQL 101

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           D      QAL+L+PTRELA QI +V++ LGDY  V   A  GG ++++D + +Q  G   
Sbjct: 102 DYALLQCQALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQA-GVHV 160

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           V GTPGRV DM+++Q L+   ++M VLDEADE+LS   GFK QIYDIF  LP   QV V 
Sbjct: 161 VVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSR--GFKDQIYDIFQLLPPKIQVGVF 218

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SATM  + LE+TRKFM+ PV+ILVKRDE++LEGIKQ+ VNV+KE+WK +TLCD+Y++L I
Sbjct: 219 SATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEDWKLETLCDLYETLAI 278

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
           TQ VIF NT++KVDWL+ ++   +  V + HGDM Q  RD +M +FR+G SRVLI+TD+ 
Sbjct: 279 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 338

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARGIDVQQVSLVIN+DLP   ENY+HRIGRSGRFGRKGVAINF+T  D   L +I+KFY+
Sbjct: 339 ARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDQRMLFDIQKFYN 398

Query: 386 IKINPMPANFAEL 398
           + +  +P+N A+L
Sbjct: 399 VVVEELPSNVADL 411


>gi|124218|sp|P10081|IF4A_YEAST EUKARYOTIC INITIATION FACTOR 4A
           (EIF-4A) (STIMULATOR FACTOR I 37 KD COMPONENT) (P37)
           >gi|72889|pir||FIBY1 translation initiation factor
           eIF-4A - yeast (Saccharomyces cerevisiae)
           >gi|4621|emb|CAA31301| (X12813) TIF1 gene product (AA 1
           - 395) [Saccharomyces cerevisiae] >gi|4623|emb|CAA31302|
           (X12814) TIF2 gene product (AA 1 - 395) [Saccharomyces
           cerevisiae] >gi|486521|emb|CAA82138| (Z28284) ORF
           YKR059w [Saccharomyces cerevisiae]
           >gi|854559|emb|CAA60817| (X87371) translation initiation
           factor [Saccharomyces cerevisiae]
           >gi|1015544|emb|CAA89433| (Z49413) ORF YJL138c
           [Saccharomyces cerevisiae]
           Length = 395
           
 Score =  423 bits (1077), Expect = e-118
 Identities = 212/373 (56%), Positives = 281/373 (74%), Gaps = 4/373 (1%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           + M L ++LLRG++ YGFE PS+IQ RAI  II G DV+AQAQSGTGKT TF+I  LQ I
Sbjct: 25  DDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRI 84

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           D   K  QAL+L+PTRELA QI +VV  L  +M++   A  GG +  +D + ++    Q 
Sbjct: 85  DTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD--AQI 142

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           V GTPGRV D I+++  +T  ++M +LDEADE+LS   GFK+QIY IF  LP   QVV++
Sbjct: 143 VVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSS--GFKEQIYQIFTLLPPTTQVVLL 200

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SATM  D+LEVT KFM +PV+ILVK+DE++LEGIKQ+ VNV++EE+K++ L D+YDS+++
Sbjct: 201 SATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISV 260

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
           TQ VIFCNT++KV+ L+ +L    F V +++ D+ Q+ERD +M +FR+G SR+LISTD+ 
Sbjct: 261 TQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLL 320

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARGIDVQQVSLVINYDLP   ENYIHRIGR GRFGRKGVAINF+T  D+  +RE+EKFYS
Sbjct: 321 ARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYS 380

Query: 386 IKINPMPANFAEL 398
            +I  +P++ A L
Sbjct: 381 TQIEELPSDIATL 393


>gi|2150025 (AF001211) translation initiation factor
           [Cryptosporidium parvum] >gi|2155304 (AF001378)
           translation initiation factor [Cryptosporidium parvum]
           Length = 405
           
 Score =  420 bits (1068), Expect = e-117
 Identities = 207/373 (55%), Positives = 277/373 (73%), Gaps = 3/373 (0%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           E++NL+ DLLRGI++YGFE PS+IQ R I  I+ G D I QAQSGTGKTATF I  LQ I
Sbjct: 34  EALNLEGDLLRGIFAYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQKI 93

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           D      Q L+L+PTRELA QI +V   LGDY  +   A  GG +++DD+ K+ K G   
Sbjct: 94  DYSLNACQVLLLAPTRELAQQIQKVALALGDYCELRCHACVGGTSVRDDMNKL-KSGVHM 152

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           V GTPGRV DM+ K  L+  N+++ +LDEADE+LS   GFK QI+DIF KLP++ QV + 
Sbjct: 153 VVGTPGRVFDMLDKGYLRVDNLKLFILDEADEMLSR--GFKVQIHDIFKKLPQDVQVALF 210

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SATM  +IL +T +FM DP +ILVK++E++LEGI+Q+ V V+K+EWK DTL D+Y++LTI
Sbjct: 211 SATMPNEILHLTTQFMRDPKRILVKQEELTLEGIRQFYVGVEKDEWKMDTLIDLYETLTI 270

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
            Q +I+CNT+++VD L++++ + +F   SMHGDM Q++R+ +M  FR+G SRVLI+TD+ 
Sbjct: 271 VQAIIYCNTRRRVDQLTKQMRERDFTCSSMHGDMDQKDREVIMRQFRSGSSRVLITTDLL 330

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARGIDVQQVSLVINYDLP   E YIHRIGRSGRFG+KGV+INF+T  D+  LR+IE+ Y+
Sbjct: 331 ARGIDVQQVSLVINYDLPVSPETYIHRIGRSGRFGKKGVSINFVTDDDIVCLRDIERHYN 390

Query: 386 IKINPMPANFAEL 398
            +I  MP    ++
Sbjct: 391 TQIEEMPMGITDI 403


>gi|1688326 (U78759) IfdA [Dictyostelium discoideum]
           Length = 395
           
 Score =  411 bits (1046), Expect = e-114
 Identities = 207/367 (56%), Positives = 274/367 (74%), Gaps = 5/367 (1%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           ++M L  DLLRGIYSYGFE PS+IQ RAI  +  G D+IAQAQSGTGKTATFT+G+L  I
Sbjct: 27  DNMELPKDLLRGIYSYGFEKPSAIQQRAIIPLSKGFDIIAQAQSGTGKTATFTVGILSRI 86

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           D+     QALI++PTRELA QI +VV  LG+Y+++ ++A  GG  + DD++ +Q  G   
Sbjct: 87  DISVLKCQALIIAPTRELAQQIQKVVLALGEYLHIKSYACIGGTKITDDIQALQS-GVHV 145

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           V GTPGRV +M+ + ++    +++  LDEADE+LS   GFK QIY+IF  LPK  QV + 
Sbjct: 146 VVGTPGRVFEMLSRGIINRDTIRIFCLDEADEMLSR--GFKDQIYEIFRFLPKTIQVGLF 203

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SATM  + L +T KFM +PV ILVK+DE++LEGI+Q+ VNV  E+ KF+ L D+Y++L+I
Sbjct: 204 SATMTDETLGITSKFMQNPVSILVKKDELTLEGIRQFYVNVGVEQGKFEVLTDLYETLSI 263

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
           TQ VIFCNT++KVDWL+ ++ +  F V S HGD  Q++RD ++  FR+G +RVLI+TD+ 
Sbjct: 264 TQSVIFCNTRRKVDWLTSKMTEQKFTVSSTHGD--QKDRDGILQAFRSGATRVLITTDLL 321

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARGIDVQQVSLVIN+DLP  IENYIHRIGRSGRFGRKGVAINFIT A+  ++ E+ + Y+
Sbjct: 322 ARGIDVQQVSLVINFDLPTNIENYIHRIGRSGRFGRKGVAINFITDAERGQIDELSRHYN 381

Query: 386 IKINPMP 392
             I  MP
Sbjct: 382 TYIAEMP 388


>gi|3002483 (AE001274) EIF-4A; L3162.6 [Leishmania major]
           >gi|3002484 (AE001274) EIF-4A; L3162.5 [Leishmania
           major]
           Length = 403
           
 Score =  409 bits (1040), Expect = e-113
 Identities = 209/374 (55%), Positives = 283/374 (74%), Gaps = 7/374 (1%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           + M L  +LLRGIYSYGFE PSSIQ RAI     G D+IAQAQSGTGKT  F+IGLLQ +
Sbjct: 29  DDMPLHQNLLRGIYSYGFEKPSSIQQRAIAPFTRGGDIIAQAQSGTGKTGAFSIGLLQRL 88

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYM-NVNAFAIT--GGKTLKDDLKKMQKHG 142
           D R   +Q L+LSPTRELA Q  +V+  +G+++ N + F  T  GG  ++DDL+K+Q   
Sbjct: 89  DFRHNLIQGLVLSPTRELALQTAEVISRIGEFLSNSSKFCETFVGGTRVQDDLRKLQAGV 148

Query: 143 CQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQV 202
             AV GTPGRV D+IK+  L+T ++++LVLDEADE+LS+  GF  QIY+IF  LPK+ QV
Sbjct: 149 IVAV-GTPGRVSDVIKRGALRTESLRVLVLDEADEMLSQ--GFADQIYEIFRFLPKDIQV 205

Query: 203 VVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDS 262
            + SATM +++LE+T+KFM DPV+ILVKR+ ++LEGIKQ+ + V+ EE K DTL D+Y++
Sbjct: 206 ALFSATMPEEVLELTKKFMRDPVRILVKRESLTLEGIKQFFIAVE-EEHKLDTLMDLYET 264

Query: 263 LTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLIST 322
           ++I Q VIF NT++KVDW++++L QSN  V SMH +M + +R++VMN FR+G SRVL++T
Sbjct: 265 VSIAQSVIFANTRRKVDWIAEKLNQSNHTVSSMHAEMPKSDRERVMNTFRSGSSRVLVTT 324

Query: 323 DVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEK 382
           D+ ARGIDV  V++VIN+DLP   ENY+HRIGR GR+GRKGVAINF+T+ D+  L EIE 
Sbjct: 325 DLVARGIDVHHVNIVINFDLPTNKENYLHRIGRGGRYGRKGVAINFVTEKDVELLHEIEA 384

Query: 383 FYSIKINPMPANFA 396
            Y  +I+ +P +FA
Sbjct: 385 HYHTQIDELPVDFA 398


>gi|2500514|sp|Q25225|IF4A_LEIBR PROBABLE EUKARYOTIC INITIATION
           FACTOR 4A (EIF-4A) >gi|643070 (U19888) ribosomal DEAD
           box protein [Leishmania braziliensis]
           Length = 403
           
 Score =  406 bits (1031), Expect = e-112
 Identities = 205/374 (54%), Positives = 280/374 (74%), Gaps = 7/374 (1%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           + M L  +LLRGIYSYGFE PSSIQ RAI     G D+IAQAQSGTGKT  F+IGLLQ +
Sbjct: 29  DDMPLHQNLLRGIYSYGFEKPSSIQQRAIAPFTRGGDIIAQAQSGTGKTGAFSIGLLQRL 88

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAF---AITGGKTLKDDLKKMQKHG 142
           D R   +Q L+LSPTRELA Q  +V+  +G++++ +A       GG  ++DDL+K+Q  G
Sbjct: 89  DFRHNLIQGLVLSPTRELALQTAEVISRIGEFLSNSAKFCETFVGGTRVQDDLRKLQA-G 147

Query: 143 CQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQV 202
                GTPGRV D+IK+  L+T ++++LVLDEADE+LS+  GF  QIY+IF  LPK+ QV
Sbjct: 148 VVVAVGTPGRVSDVIKRGALRTESLRVLVLDEADEMLSQ--GFADQIYEIFRFLPKDIQV 205

Query: 203 VVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDS 262
            + SATM +++LE+T+KFM DPV+ILVKR+ ++LEGIKQ+ + V+ EE K DTL D+Y++
Sbjct: 206 ALFSATMPEEVLELTKKFMRDPVRILVKRESLTLEGIKQFFIAVE-EEHKLDTLMDLYET 264

Query: 263 LTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLIST 322
           ++I Q VIF NT++KVDW++++L QSN  V SMH +M + +R++VMN FR+G SRVL++T
Sbjct: 265 VSIAQSVIFANTRRKVDWIAEKLNQSNHTVSSMHAEMPKSDRERVMNTFRSGSSRVLVTT 324

Query: 323 DVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEK 382
           D+ ARGIDV  V++VIN+DLP   ENY+HRIGR GR+G KGVAINF+T+ D+  L EIE 
Sbjct: 325 DLVARGIDVHHVNIVINFDLPTNKENYLHRIGRGGRYGVKGVAINFVTEKDVELLHEIEG 384

Query: 383 FYSIKINPMPANFA 396
            Y  +I+ +P +FA
Sbjct: 385 HYHTQIDELPVDFA 398


>gi|2119937|pir||S52022 translation initiation factor eIF-4A.13 -
           common tobacco (fragment)
           Length = 355
           
 Score =  374 bits (949), Expect = e-103
 Identities = 187/316 (59%), Positives = 239/316 (75%), Gaps = 3/316 (0%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           ++M L+++LLRGIY+YGFE PS+IQ R I     G DVI QAQSGTGKTATF  G+LQ +
Sbjct: 43  DAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQL 102

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           D    + QAL+L+PTRELA QI +V++ LGDY+ V   A  GG ++++D + +Q  G   
Sbjct: 103 DYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQS-GVHV 161

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           V GTPGRV DM+++Q L+  +++M VLDEADE+LS   GFK QIYDIF  LP   QV V 
Sbjct: 162 VVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSR--GFKDQIYDIFQLLPPKIQVGVF 219

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SATM  + LE+TRKFMN PV+ILVKRDE++LEGIKQ+ VNVDKEEWK +TLCD+Y++L I
Sbjct: 220 SATMPPEALEITRKFMNQPVRILVKRDEVTLEGIKQFYVNVDKEEWKLETLCDLYETLAI 279

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
           TQ VIF NT++KVDWL+ ++   +  V + HGDM Q  RD +M +FR+G SRVLI+TD+ 
Sbjct: 280 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 339

Query: 326 ARGIDVQQVSLVINYD 341
           ARGIDVQQVSLVINYD
Sbjct: 340 ARGIDVQQVSLVINYD 355


>gi|2500519|sp|Q40466|IF4X_TOBAC EUKARYOTIC INITIATION FACTOR 4A-13
           (EIF-4A-13) >gi|485941|emb|CAA55741| (X79140) NeIF-4A13
           [Nicotiana tabacum]
           Length = 355
           
 Score =  372 bits (946), Expect = e-102
 Identities = 186/316 (58%), Positives = 239/316 (74%), Gaps = 3/316 (0%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           ++M L+++LLRGIY+YGFE PS+IQ R I     G DVI QAQSGTGKTATF  G+LQ +
Sbjct: 43  DAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQL 102

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           D    + QAL+L+PTRELA QI +V++ LGDY+ V   A  GG ++++D + +Q  G   
Sbjct: 103 DYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQS-GVHV 161

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           V GTPGRV DM+++Q L+  +++M VLDEADE+LS   GFK QIYDIF  LP   QV V 
Sbjct: 162 VVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSR--GFKDQIYDIFQLLPPKIQVGVF 219

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SATM  + LE+TRKFMN PV+ILVKRD+++LEGIKQ+ VNVDKEEWK +TLCD+Y++L I
Sbjct: 220 SATMPPEALEITRKFMNQPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLCDLYETLAI 279

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
           TQ VIF NT++KVDWL+ ++   +  V + HGDM Q  RD +M +FR+G SRVLI+TD+ 
Sbjct: 280 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 339

Query: 326 ARGIDVQQVSLVINYD 341
           ARGIDVQQVSLVINYD
Sbjct: 340 ARGIDVQQVSLVINYD 355


>gi|2119936|pir||S52021 translation initiation factor eIF-4A.6 -
           common tobacco (fragment)
           Length = 254
           
 Score =  328 bits (833), Expect = 3e-89
 Identities = 162/253 (64%), Positives = 200/253 (79%), Gaps = 2/253 (0%)

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           V GTPGRV DM+++Q L+  N++M VLDEADE+LS   GFK QIYDIF  LP   QV V 
Sbjct: 3   VVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSR--GFKDQIYDIFQLLPPKIQVGVF 60

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SATM  + LE+TRKFMN PV+ILVKRDE++LEGIKQ+ VNVDKEEWK +TLCD+Y++L I
Sbjct: 61  SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAI 120

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
           TQ VIF NT++KVDWL+ ++   +  V + HGDM Q  RD +M +FR+G SRVLI+TD+ 
Sbjct: 121 TQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 180

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARGIDVQQVSLVINYDLP   ENY+HRIGRSGRFGRKGV+INF+TK D   L +I+KFY+
Sbjct: 181 ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVSINFVTKDDERMLFDIQKFYN 240

Query: 386 IKINPMPANFAEL 398
           + I  +PAN A+L
Sbjct: 241 VVIEELPANVADL 253


>gi|2500515|sp|Q40469|IF46_TOBAC EUKARYOTIC INITIATION FACTOR 4A-6
           (EIF-4A-6) >gi|485947|emb|CAA55740| (X79139) NeIF-4A6
           [Nicotiana tabacum]
           Length = 253
           
 Score =  328 bits (832), Expect = 4e-89
 Identities = 161/253 (63%), Positives = 200/253 (78%), Gaps = 2/253 (0%)

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           V GTPGRV DM+++Q L+  N++M VLDEADE+LS   GFK QIYDIF  LP   QV + 
Sbjct: 3   VVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSR--GFKDQIYDIFQLLPPKIQVGIF 60

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SATM  + LE+TRKFMN PV+ILVKRDE++LEGIKQ+ VNVDKEEWK +TLCD+Y++L I
Sbjct: 61  SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAI 120

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
           TQ VIF NT++KVDWL+ ++   +  V + HGDM Q  RD +M +FR+G SRVLI+TD+ 
Sbjct: 121 TQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 180

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARGIDVQQVSLVINYDLP   ENY+HRIGRSGRFGRKGV+INF+TK D   L +I+KFY+
Sbjct: 181 ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVSINFVTKDDERMLFDIQKFYN 240

Query: 386 IKINPMPANFAEL 398
           + I  +PAN A+L
Sbjct: 241 VVIEELPANVADL 253


>gi|532817 (U13876) highly similar to eukaryotic initiation factor
           4a (EIF-4A) [Caenorhabditis elegans]
           Length = 363
           
 Score =  324 bits (821), Expect = 8e-88
 Identities = 163/370 (44%), Positives = 250/370 (67%), Gaps = 12/370 (3%)

Query: 28  MNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDL 87
           M LK++LLRGIY +GFE PS+IQ  A+    +GKDV  Q+Q+G+GKT    I +LQ ID 
Sbjct: 1   MELKEELLRGIYGFGFEKPSAIQKSAVAPCTTGKDVTIQSQAGSGKTVISLIDILQGIDC 60

Query: 88  RKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVS 147
               LQ ++L+P R +A +  + +K+LG  +NVNA  +    T ++D           + 
Sbjct: 61  EDAHLQVILLAPQRGMAQRAHEQLKSLGRNLNVNATCLGFDTTAENDKIS------HVLM 114

Query: 148 GTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSA 207
           GTP   L  I      T  ++M VLDEADE+LS+  GFK QIY++F  +P++ QVV++SA
Sbjct: 115 GTPKDFLSNIPSD---TSRIKMFVLDEADEMLSK--GFKDQIYEVFRSMPQDVQVVLLSA 169

Query: 208 TMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQ 267
           TM  ++L+VT +FM DP++ILVK+DE++LEGI+Q+ +NV K+EWKF+ LCD+  +   TQ
Sbjct: 170 TMPSEVLDVTNRFMRDPIRILVKKDELTLEGIRQFYINVQKDEWKFNCLCDLLKTSRETQ 229

Query: 268 CVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWAR 327
            +IFCNT+++V  L+++L+     V   HG+M+  ER+ ++ DF + ++RVL++TD+ AR
Sbjct: 230 ALIFCNTRRRVTQLTEQLMSIPIKVSCFHGNMEHNEREDMVKDFNSRNTRVLVTTDLMAR 289

Query: 328 GIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYSIK 387
           G+++++ SL+INYD+   +ENY+ R GR G FG KG+ I+F T+ D++ L++IE  YS +
Sbjct: 290 GMNIRK-SLIINYDVSGNMENYMLRNGRQGNFGSKGLPISFFTENDISDLKKIENHYSTR 348

Query: 388 INPMPANFAE 397
           I  MP +F E
Sbjct: 349 IEEMPESFLE 358


>gi|2136088|pir||I52691 RCK - human >gi|458727|gnl|PID|d1005007
           (D17532) RCK [Homo sapiens]
           Length = 472
           
 Score =  291 bits (738), Expect = 4e-78
 Identities = 152/370 (41%), Positives = 239/370 (64%), Gaps = 6/370 (1%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           E   LK +LL GI+  G+E PS IQ  +I   +SG+D++A+A++GTGK+  + I LL+ +
Sbjct: 88  EDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERL 147

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMN-VNAFAITGGKTLKDDLKKMQKHGCQ 144
           DL+K ++QA+++ PTRELA Q+ Q+   +  +M      A TGG  L+DD+ ++      
Sbjct: 148 DLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDT-VH 206

Query: 145 AVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVV 204
            V  TPGR+LD+IKK + +  +VQM+VLDEAD+LLS+   F Q + DI   LPKN Q+++
Sbjct: 207 VVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQD--FVQIMEDIILTLPKNRQILL 264

Query: 205 VSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLT 264
            SAT    + +     +  P +I +  +E++L+G+ QY   V + + K   L  ++  L 
Sbjct: 265 YSATFPLSVQKFMNSHLQKPYEINLM-EELTLKGVTQYYAYVTERQ-KVHCLNTLFSRLQ 322

Query: 265 ITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDV 324
           I Q +IFCN+ ++V+ L++++ Q  ++   +H  M+QE R++V +DFR G  R L+ TD+
Sbjct: 323 INQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDL 382

Query: 325 WARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFY 384
           + RGID+Q V++VIN+D P++ E Y+HRIGRSGRFG  G+AIN IT  D   L+ IE+  
Sbjct: 383 FTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQL 442

Query: 385 SIKINPMPAN 394
             +I P+P+N
Sbjct: 443 GTEIKPIPSN 452


>gi|129376|sp|P26196|DDX6_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE
           P54 (ONCOGENE RCK) (DEAD BOX PROTEIN 6)
           >gi|106335|pir||S22651 hypothetical protein - human
           Length = 483
           
 Score =  291 bits (738), Expect = 4e-78
 Identities = 152/370 (41%), Positives = 239/370 (64%), Gaps = 6/370 (1%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           E   LK +LL GI+  G+E PS IQ  +I   +SG+D++A+A++GTGK+  + I LL+ +
Sbjct: 99  EDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERL 158

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMN-VNAFAITGGKTLKDDLKKMQKHGCQ 144
           DL+K ++QA+++ PTRELA Q+ Q+   +  +M      A TGG  L+DD+ ++      
Sbjct: 159 DLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDT-VH 217

Query: 145 AVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVV 204
            V  TPGR+LD+IKK + +  +VQM+VLDEAD+LLS+   F Q + DI   LPKN Q+++
Sbjct: 218 VVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQD--FVQIMEDIILTLPKNRQILL 275

Query: 205 VSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLT 264
            SAT    + +     +  P +I +  +E++L+G+ QY   V + + K   L  ++  L 
Sbjct: 276 YSATFPLSVQKFMNSHLEKPYEINLM-EELTLKGVTQYYAYVTERQ-KVHCLNTLFSRLQ 333

Query: 265 ITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDV 324
           I Q +IFCN+ ++V+ L++++ Q  ++   +H  M+QE R++V +DFR G  R L+ TD+
Sbjct: 334 INQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDL 393

Query: 325 WARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFY 384
           + RGID+Q V++VIN+D P++ E Y+HRIGRSGRFG  G+AIN IT  D   L+ IE+  
Sbjct: 394 FTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQL 453

Query: 385 SIKINPMPAN 394
             +I P+P+N
Sbjct: 454 GTEIKPIPSN 463


>gi|1709532|sp|P54823|DDX6_MOUSE PROBABLE ATP-DEPENDENT RNA HELICASE
           P54 (ONCOGENE RCK HOMOLOG) (DEAD BOX PROTEIN 6)
           >gi|940408|gnl|PID|d1009723 (D50494) RCK [Mus musculus]
           Length = 483
           
 Score =  291 bits (738), Expect = 4e-78
 Identities = 152/370 (41%), Positives = 239/370 (64%), Gaps = 6/370 (1%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           E   LK +LL GI+  G+E PS IQ  +I   +SG+D++A+A++GTGK+  + I LL+ +
Sbjct: 99  EDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERL 158

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMN-VNAFAITGGKTLKDDLKKMQKHGCQ 144
           DL+K ++QA+++ PTRELA Q+ Q+   +  +M      A TGG  L+DD+ ++      
Sbjct: 159 DLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDT-VH 217

Query: 145 AVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVV 204
            V  TPGR+LD+IKK + +  +VQM+VLDEAD+LLS+   F Q + DI   LPKN Q+++
Sbjct: 218 VVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQD--FVQIMEDIILTLPKNRQILL 275

Query: 205 VSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLT 264
            SAT    + +     +  P +I +  +E++L+G+ QY   V + + K   L  ++  L 
Sbjct: 276 YSATFPLSVQKFMNSHLQKPYEINLM-EELTLKGVTQYYAYVTERQ-KVHCLNTLFSRLQ 333

Query: 265 ITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDV 324
           I Q +IFCN+ ++V+ L++++ Q  ++   +H  M+QE R++V +DFR G  R L+ TD+
Sbjct: 334 INQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDL 393

Query: 325 WARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFY 384
           + RGID+Q V++VIN+D P++ E Y+HRIGRSGRFG  G+AIN IT  D   L+ IE+  
Sbjct: 394 FTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQL 453

Query: 385 SIKINPMPAN 394
             +I P+P+N
Sbjct: 454 GTEIKPIPSN 463


>gi|1709533|sp|P54824|DDX6_XENLA ATP-DEPENDENT RNA HELICASE P54
           >gi|1044938|emb|CAA63149| (X92421) RNA helicase p54
           [Xenopus laevis]
           Length = 481
           
 Score =  288 bits (730), Expect = 4e-77
 Identities = 151/370 (40%), Positives = 238/370 (63%), Gaps = 6/370 (1%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           E   LK +LL GI+  G+E PS IQ  +I   +SG+D++A+A++GTGKT  + I LL+ +
Sbjct: 98  EDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKTGAYLIPLLERL 157

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMN-VNAFAITGGKTLKDDLKKMQKHGCQ 144
           DL+K  +QA+++ PTRELA Q+ Q+   +  +M      A TGG  L+DD+ ++      
Sbjct: 158 DLKKDCIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDT-VH 216

Query: 145 AVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVV 204
            V  TPGR+LD+IKK + +  ++QM+VLDEAD+LLS+   F Q + DI   LPKN Q+++
Sbjct: 217 VVIATPGRILDLIKKGVAKVDHIQMIVLDEADKLLSQD--FMQIMEDIIMTLPKNRQILL 274

Query: 205 VSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLT 264
            SAT    + +     +  P +I +  +E++L+G+ QY   V + + K   L  ++  L 
Sbjct: 275 YSATFPLSVQKFMTLHLQKPYEINLM-EELTLKGVTQYYAYVTERQ-KVHCLNTLFSRLQ 332

Query: 265 ITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDV 324
           I Q +IFCN+ ++V+ L++++ Q  ++   +H  M+QE R++V +DFR G  R L+ TD+
Sbjct: 333 INQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDL 392

Query: 325 WARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFY 384
           + RGID+Q V++VIN+D P++ E Y+HRIGRSGRFG  G+AIN IT  D   L+ IE+  
Sbjct: 393 FTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQL 452

Query: 385 SIKINPMPAN 394
             +I P+P++
Sbjct: 453 GTEIKPIPSS 462


>gi|2745894|gb|AAB94769| (AF038995) putative RNA helicase RCK [Mus
           musculus]
           Length = 453
           
 Score =  286 bits (724), Expect = 2e-76
 Identities = 149/370 (40%), Positives = 237/370 (63%), Gaps = 6/370 (1%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           E   LK +LL GI+  G+E PS IQ  +I   +SG+D++A+A++GTGK+  + I LL+ +
Sbjct: 74  EDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERL 133

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMN-VNAFAITGGKTLKDDLKKMQKHGCQ 144
           DL+K ++QA+++ PTRELA Q+ Q+   +  +M      A TG   L+DD+ ++      
Sbjct: 134 DLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGPTNLRDDIMRLDDT-VH 192

Query: 145 AVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVV 204
            V  TPGR+LD+IKK + +  +VQM+VLDEAD+LLS+   F Q + DI   LPKN Q+++
Sbjct: 193 VVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQD--FVQIMEDIILTLPKNRQILL 250

Query: 205 VSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLT 264
            SAT    + +     +  P +I +  +E++L+G+ QY   V + + K   L  ++  L 
Sbjct: 251 YSATFPLSVQKFMNSHLQKPYEINLM-EELTLKGVTQYYAYVTERQ-KVHCLNTLFSRLQ 308

Query: 265 ITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDV 324
           I Q +IFCN+ ++V+ L++++ Q  ++   +H  M+QE R++V +DF  G  R L+ TD+
Sbjct: 309 INQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFENGLCRNLVCTDL 368

Query: 325 WARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFY 384
           + RGID+Q V++VIN+D P++ E Y+HR+GRSGRFG  G+AIN IT  D   L+ IE+  
Sbjct: 369 FTRGIDIQAVNVVINFDFPKLAETYLHRVGRSGRFGHLGLAINLITYDDRFNLKSIEEQL 428

Query: 385 SIKINPMPAN 394
             +I P+P+N
Sbjct: 429 GTEIKPIPSN 438


>gi|126938|sp|P23128|ME31_DROME PUTATIVE ATP-DEPENDENT RNA HELICASE
           >gi|157594 (M59926) RNA helicase [Drosophila
           melanogaster]
           Length = 459
           
 Score =  280 bits (710), Expect = 8e-75
 Identities = 150/367 (40%), Positives = 230/367 (61%), Gaps = 5/367 (1%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           E   LK +LL GI+  G+E PS IQ  AI   +SGKDV+A+A++GTGKT  + I +L+ I
Sbjct: 61  EEFCLKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLEQI 120

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           D  K  +QAL++ PTRELA Q  Q+   L  ++++     TGG  LKDD+ ++ +   Q 
Sbjct: 121 DPTKDYIQALVMVPTRELALQTSQICIELAKHLDIRVMVTTGGTILKDDILRIYQK-VQL 179

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           +  TPGR+LD++ K++    + ++LVLDEAD+LLS  L F+  +  +  KLPK+ Q+++ 
Sbjct: 180 IIATPGRILDLMDKKVADMSHCRILVLDEADKLLS--LDFQGMLDHVILKLPKDPQILLF 237

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SAT    +     K + +P +I +  +E++L+G+ QY   V +E  K   L  ++  L I
Sbjct: 238 SATFPLTVKNFMEKHLREPYEINLM-EELTLKGVTQYYAFV-QERQKVHCLNTLFSKLQI 295

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
            Q +IFCN+ ++V+ L++++ +  +    +H  M Q  R++V +DFR G  R L+ +D++
Sbjct: 296 NQSIIFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCSDLF 355

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
            RGIDVQ V++VIN+D P + E Y+HRIGRSGRFG  G+AIN IT  D   L  IEK   
Sbjct: 356 TRGIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHRIEKELG 415

Query: 386 IKINPMP 392
            +I P+P
Sbjct: 416 TEIKPIP 422


>gi|3776001|emb|CAA09203| (AJ010464) RNA helicase [Arabidopsis
           thaliana]
           Length = 498
           
 Score =  280 bits (709), Expect = 1e-74
 Identities = 145/369 (39%), Positives = 231/369 (62%), Gaps = 5/369 (1%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           E+  LK DLL+GIY  GFE PS IQ  +I   ++G D++A+A++GTGKT  F I +L+ I
Sbjct: 127 ENYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKI 186

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           D     +QA+IL PTRELA Q  QV K L  Y+N+     TGG +L+DD+ ++ +     
Sbjct: 187 DPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQP-VHL 245

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           + GTPGR+LD+ KK +   ++  MLV+DEAD+LLS    F+  + ++   LP+N Q ++ 
Sbjct: 246 LVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAE--FQPSLEELIQFLPQNRQFLMF 303

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SAT    +     + +  P  I +  D+++L G+ QY   V++ + K   L  ++  L I
Sbjct: 304 SATFPVTVKAFKDRHLRKPYVINLM-DQLTLMGVTQYYAFVEERQ-KVHCLNTLFSKLQI 361

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
            Q +IFCN+  +V+ L++++ +  ++   +H  M Q+ R++V ++FR G  R L+ TD++
Sbjct: 362 NQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLF 421

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
            RGID+Q V++VIN+D P   E+Y+HR+GRSGRFG  G+A+N +T  D  K+ + E+   
Sbjct: 422 TRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQELG 481

Query: 386 IKINPMPAN 394
            +I P+P+N
Sbjct: 482 TEIKPIPSN 490


>gi|1174456|sp|Q09181|ST13_SCHPO PUTATIVE ATP-DEPENDENT RNA HELICASE
           STE13 >gi|1076910|pir||S46654 probable RNA helicase -
           fission yeast (Schizosaccharomyces pombe)
           >gi|703066|gnl|PID|d1006741 (D29795) RNA helicase
           [Schizosaccharomyces pombe] >gi|4176526|emb|CAA22882|
           (AL035263) putative atp-dependent rna helicase ste13p
           [Schizosaccharomyces pombe]
           Length = 485
           
 Score =  280 bits (708), Expect = 1e-74
 Identities = 154/367 (41%), Positives = 222/367 (59%), Gaps = 5/367 (1%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           E   LK +LL GI+  GFE PS IQ  +I   +SG+D++A+A++GTGKTA F I  L+ +
Sbjct: 47  EDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKV 106

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           D +K  +Q LIL PTRELA Q  QV K LG +MNV     TGG TL+DD+ ++       
Sbjct: 107 DTKKSKIQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDT-VHI 165

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           V GTPGRVLD+  K +         V+DEAD+LLS    F   I  + +  PKN Q+ + 
Sbjct: 166 VVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPE--FTPIIEQLLSYFPKNRQISLY 223

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SAT    +     K +N P +I +  DE++L G+ QY   VD+ + K   L  ++  L I
Sbjct: 224 SATFPLIVKNFMDKHLNKPYEINLM-DELTLRGVTQYYAFVDESQ-KVHCLNTLFSKLQI 281

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
            Q +IFCN+  +V+ L++++ +  ++    H  M Q  R++V ++FR G  R L+ +D+ 
Sbjct: 282 NQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLL 341

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
            RGID+Q V++VIN+D P+  E Y+HRIGRSGRFG +G+AI+FI+ AD   L  IE    
Sbjct: 342 TRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRGLAISFISWADRFNLYRIENELG 401

Query: 386 IKINPMP 392
            +I P+P
Sbjct: 402 TEIQPIP 408


>gi|103314|pir||A39157 probable helicase (EC 3.6.1.-) - fruit fly
           (Drosophila melanogaster) (fragment)
           Length = 369
           
 Score =  280 bits (708), Expect = 1e-74
 Identities = 149/363 (41%), Positives = 229/363 (63%), Gaps = 5/363 (1%)

Query: 30  LKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRK 89
           LK +LL GI+  G+E PS IQ  AI   +SGKDV+A+A++GTGKT  + I +L+ ID  K
Sbjct: 3   LKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLEQIDPTK 62

Query: 90  KDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVSGT 149
             +QAL++ PTRELA Q  Q+   L  ++++     TGG  LKDD+ ++ +   Q +  T
Sbjct: 63  DYIQALVMVPTRELALQTSQICIELAKHLDIRVMVTTGGTILKDDILRIYQK-VQLIIAT 121

Query: 150 PGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSATM 209
           PGR+LD++ K++    + ++LVLDEAD+LLS  L F+  +  +  KLPK+ Q+++ SAT 
Sbjct: 122 PGRILDLMDKKVADMSHCRILVLDEADKLLS--LDFQGMLDHVILKLPKDPQILLFSATF 179

Query: 210 NKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQCV 269
              +     K + +P +I +  +E++L+G+ QY   V +E  K   L  ++  L I Q +
Sbjct: 180 PLTVKNFMEKHLREPYEINLM-EELTLKGVTQYYAFV-QERQKVHCLNTLFSKLQINQSI 237

Query: 270 IFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGI 329
           IFCN+ ++V+ L++++ +  +    +H  M Q  R++V +DFR G  R L+ +D++ RGI
Sbjct: 238 IFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCSDLFTRGI 297

Query: 330 DVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYSIKIN 389
           DVQ V++VIN+D P + E Y+HRIGRSGRFG  G+AIN IT  D   L  IEK    +I 
Sbjct: 298 DVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHRIEKELGTEIK 357

Query: 390 PMP 392
           P+P
Sbjct: 358 PIP 360


>gi|3386613 (AC004665) putative ATP-dependent RNA helicase
           [Arabidopsis thaliana]
           Length = 528
           
 Score =  279 bits (707), Expect = 2e-74
 Identities = 145/368 (39%), Positives = 230/368 (62%), Gaps = 5/368 (1%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           E   LK DLLRGIY  GFE PS IQ  +I   ++G D++A+A++GTGKT  F I  L+ I
Sbjct: 157 EDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEKI 216

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           D     +QA+IL PTRELA Q  QV K L  Y+ +     TGG +L+DD+ ++ +     
Sbjct: 217 DPENNVIQAVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQP-VHL 275

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           + GTPGR+LD+ KK +   ++  MLV+DEAD+LLS  + F+  I ++   LP++ Q+++ 
Sbjct: 276 LVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLS--VEFQPSIEELIQFLPESRQILMF 333

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SAT    +     +++  P  I+   D+++L G+ QY   V++ + K   L  ++  L I
Sbjct: 334 SATFPVTVKSFKDRYLKKPY-IINLMDQLTLMGVTQYYAFVEERQ-KVHCLNTLFSKLQI 391

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
            Q +IFCN+  +V+ L++++ +  ++   +H  M Q+ R++V +DFR G  R L+ TD++
Sbjct: 392 NQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTDLF 451

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
            RGID+Q V++VIN+D P   E+Y+HR+GRSGRFG  G+A+N +T  D  K+ + E+   
Sbjct: 452 TRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQELG 511

Query: 386 IKINPMPA 393
            +I P+P+
Sbjct: 512 TEIKPIPS 519


>gi|3775993|emb|CAA09199| (AJ010460) RNA helicase [Arabidopsis
           thaliana]
           Length = 505
           
 Score =  278 bits (703), Expect = 5e-74
 Identities = 145/367 (39%), Positives = 233/367 (62%), Gaps = 5/367 (1%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           E   LK +LL GIY  GFE PS IQ  +I   ++G+D++A+A++GTGKTA F I +L+ I
Sbjct: 134 EDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKI 193

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           D     +QA+I+ PTRELA Q  QV K LG ++ +     TGG +LKDD+ ++ +     
Sbjct: 194 DQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQP-VHL 252

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           + GTPGR+LD+ KK +   ++  +LV+DEAD+LLS+   F+  +  + + LP++ Q+++ 
Sbjct: 253 LVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQE--FQPSVEHLISFLPESRQILMF 310

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SAT    + +   +F+ +P  I +  DE++L+GI Q+   V++ + K   L  ++  L I
Sbjct: 311 SATFPVTVKDFKDRFLTNPYVINLM-DELTLKGITQFYAFVEERQ-KIHCLNTLFSKLQI 368

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
            Q +IFCN+  +V+ L++++ +  ++   +H  M Q+ R++V +DFR G  R L+ TD++
Sbjct: 369 NQSIIFCNSVNRVELLAKKITELGYSCSYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLF 428

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
            RGID+Q V++VIN+D P+  E Y+HR+GRSGRFG  G+A+N IT  D   L  IE+   
Sbjct: 429 TRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELG 488

Query: 386 IKINPMP 392
            +I  +P
Sbjct: 489 TEIKQIP 495


>gi|1175426|sp|Q09747|YB66_SCHPO PUTATIVE ATP-DEPENDENT RNA HELICASE
           C12C2.06 >gi|984214|emb|CAA90819| (Z54140) probable
           ATP-dependent RNA helicase [Schizosaccharomyces pombe]
           Length = 503
           
 Score =  274 bits (693), Expect = 8e-73
 Identities = 151/379 (39%), Positives = 235/379 (61%), Gaps = 17/379 (4%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISG--KDVIAQAQSGTGKTATFTIGLLQ 83
           E + LK +LL+GIYS  F+ PS IQ +A+  ++S   +++I Q+QSGTGKTA F + +L 
Sbjct: 117 EELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLS 176

Query: 84  AIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVN-AFAITGGKTLKDDLKKMQKHG 142
            +D      QA+ L+P+RELA QI  VV  +G Y  V  AF I      KD + K  K  
Sbjct: 177 RVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGI------KDSVPKGAKID 230

Query: 143 CQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQV 202
            Q V GTPG V+D++K++ L  R++++ VLDEAD +L +  G   Q   I   LP+N Q+
Sbjct: 231 AQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQ-GLGDQSMRIKHLLPRNTQI 289

Query: 203 VVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDS 262
           V+ SAT ++ + +   +F  +  +I +K +E+S+EGIKQ  ++   EE K++ L ++Y  
Sbjct: 290 VLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGL 349

Query: 263 LTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLIST 322
           LTI Q +IFC  K   + +++R+      V  + G+++  +RD +M+ FR G S+VL++T
Sbjct: 350 LTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTT 409

Query: 323 DVWARGIDVQQVSLVINYDLP------EIIENYIHRIGRSGRFGRKGVAINFI-TKADLA 375
           +V ARGIDV QV+LV+NYD+P         + Y+HRIGR+GRFGR GV+INF+  K    
Sbjct: 410 NVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWE 469

Query: 376 KLREIEKFYSIKINPMPAN 394
           ++  I++++   I  +P +
Sbjct: 470 EMNAIQEYFQRPITRVPTD 488


>gi|729329|sp|P39517|DHH1_YEAST PUTATIVE ATP-DEPENDENT RNA HELICASE
           DHH1 >gi|320822|pir||S31229 probable RNA helicase DHH1 -
           yeast (Saccharomyces cerevisiae) >gi|4353|emb|CAA46853|
           (X66057) RNA-helicase of the DEAD-BOX family
           [Saccharomyces cerevisiae] >gi|1061279|emb|CAA91586|
           (Z67750) putative RNA helicase [Saccharomyces
           cerevisiae] >gi|1431254|emb|CAA98734| (Z74208) ORF
           YDL160c [Saccharomyces cerevisiae]
           Length = 506
           
 Score =  272 bits (688), Expect = 3e-72
 Identities = 147/368 (39%), Positives = 226/368 (60%), Gaps = 5/368 (1%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           E   LK +LL GI+  GFE PS IQ  AI   I+G+D++A+A++GTGKTA F I  L+ +
Sbjct: 49  EDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKV 108

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
             +   +QALI+ PTRELA Q  QVV+ LG +  ++    TGG  L+DD+ ++ +     
Sbjct: 109 KPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNET-VHI 167

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           + GTPGRVLD+  +++    +  + ++DEAD++LS    FK  I  I + LP   Q ++ 
Sbjct: 168 LVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRD--FKTIIEQILSFLPPTHQSLLF 225

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SAT    + E   K ++ P +I +  +E++L+GI QY   V++ + K   L  ++  L I
Sbjct: 226 SATFPLTVKEFMVKHLHKPYEINLM-EELTLKGITQYYAFVEERQ-KLHCLNTLFSKLQI 283

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
            Q +IFCN+  +V+ L++++    ++    H  MKQ+ER+KV ++FR G  R L+ +D+ 
Sbjct: 284 NQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLL 343

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
            RGID+Q V++VIN+D P+  E Y+HRIGRSGRFG  G+AIN I   D   L +IE+   
Sbjct: 344 TRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELG 403

Query: 386 IKINPMPA 393
            +I  +PA
Sbjct: 404 TEIAAIPA 411


>gi|407992 (L25125) RNA helicase [Mus musculus]
           Length = 478
           
 Score =  268 bits (677), Expect = 6e-71
 Identities = 151/375 (40%), Positives = 234/375 (62%), Gaps = 18/375 (4%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISG--KDVIAQAQSGTGKTATFTIGLLQ 83
           E + LK  LL+G+Y+ GF  PS IQ  A+  +++   +++IAQ+QSGTGKTA F + +L 
Sbjct: 94  EELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLS 153

Query: 84  AIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVN--AFAITGGKTLKDDLKKMQKH 141
            ++   +  Q L LSPT ELA Q G+V++ +G +      A+A+ G K     L++ QK 
Sbjct: 154 RVEPADRYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNK-----LERGQKV 208

Query: 142 GCQAVSGTPGRVLDMIKK-QMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNC 200
             Q V GTPG VLD   K + +  + +++ VLDEAD +++ T G + Q   I   +P+NC
Sbjct: 209 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIA-TQGHQDQSIRIQRIVPRNC 267

Query: 201 QVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIY 260
           Q+++ SAT    + +  +K + DP  I +KR+E +L+ IKQY V  +  E KF  LC++Y
Sbjct: 268 QMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNREEKFQALCNLY 327

Query: 261 DSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLI 320
            ++TI Q +IFC+T+K   WL+  L +    V  + G+M  E+R  V+  FR G  +VL+
Sbjct: 328 GAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLV 387

Query: 321 STDVWARGIDVQQVSLVINYDLP------EIIENYIHRIGRSGRFGRKGVAINFI-TKAD 373
           +T+V ARGIDV+QVS+VIN+DLP         E Y+HRIGR+GRFG++G+A+N + +K  
Sbjct: 388 TTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHS 447

Query: 374 LAKLREIEKFYSIKI 388
           +  L  I++ ++ KI
Sbjct: 448 MNILNRIQEHFNKKI 462


>gi|3108197 (AF005239) DEAD-box helicase [Drosophila melanogaster]
           Length = 460
           
 Score =  261 bits (659), Expect = 8e-69
 Identities = 146/384 (38%), Positives = 236/384 (61%), Gaps = 18/384 (4%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISG--KDVIAQAQSGTGKTATFTIGLLQ 83
           E+++LK  LL+GIY+ GF  PS IQ  A+  +++   +++IAQ+QSGTGKTA F + +L 
Sbjct: 76  EALHLKASLLKGIYAMGFNTPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLS 135

Query: 84  AIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNA--FAITGGKTLKDDLKKMQKH 141
            +++     Q L LSPT ELA Q G+V   +G +       FA+ G +   D  KK+++H
Sbjct: 136 RVNVCLNHPQVLCLSPTYELAIQTGEVAARMGQFCREIKLRFAVRGEEV--DRSKKIEEH 193

Query: 142 GCQAVSGTPGRVLDM-IKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNC 200
               + GTPG++LD  IK ++   + + + VLDEAD +++ T G   Q   I   L  +C
Sbjct: 194 ---ILIGTPGKLLDWGIKFRLFDMKKISVFVLDEADVMIA-TQGHHDQCIRIHKMLNPHC 249

Query: 201 QVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIY 260
           Q++  SAT  K++++  R  + DP  I + R+E SLE IKQY V    EE K++ + +IY
Sbjct: 250 QMLFFSATYGKEVMDFARLIVADPTIIRLMREEESLENIKQYYVKCKNEEGKYNAIQNIY 309

Query: 261 DSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLI 320
             +++ Q +IFC+TK+   WL+ ++     +V  + GD+   +R  V++ FR+G  +VLI
Sbjct: 310 GCISVGQAIIFCHTKRTAAWLAAKMTSDGHSVAVLTGDLTVVQRLDVLDRFRSGLEKVLI 369

Query: 321 STDVWARGIDVQQVSLVINYDLPEII------ENYIHRIGRSGRFGRKGVAINFITKADL 374
           +T++ +RGID++Q+ +V+N+DLP  +      E Y+HRIGR+GRFG+ G+AIN IT    
Sbjct: 370 TTNILSRGIDIEQLQVVVNFDLPVDLDGMADCETYLHRIGRTGRFGKSGIAINLITDEKT 429

Query: 375 AKL-REIEKFYSIKINPMPANFAE 397
            K+  +IEK ++ KI  +  + A+
Sbjct: 430 MKVCSDIEKHFNKKIEVLNTDSAD 453


>gi|1177010|sp|P42305|YXIN_BACSU PROBABLE RNA HELICASE IN WAPA-LICT
           INTERGENIC REGION >gi|665989|gnl|PID|d1012360 (D83026)
           homologous to ATP dependent RNA helicase DeaD of E.
           coli; hypothetical [Bacillus subtilis]
           >gi|2636457|emb|CAB15947| (Z99124) ATP-dependent RNA
           helicase [Bacillus subtilis]
           Length = 479
           
 Score =  257 bits (651), Expect = 7e-68
 Identities = 144/368 (39%), Positives = 222/368 (60%), Gaps = 4/368 (1%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           ++  +  D+LR +   G+  P+ +Q   I   +  KD++ ++Q+G+GKTA+F I L +  
Sbjct: 5   KNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPLCELA 64

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           +  +   QALIL+PTRELA Q+ + + N+G +  + A A+ G K+  D  K   K     
Sbjct: 65  NWDENKPQALILTPTRELAVQVKEDITNIGRFKRIKATAVFG-KSSFDKQKAELKQKSHI 123

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           V GTPGRVLD I+K  L    +  LV+DEADE+L+  +GF +Q+  I   LP     ++ 
Sbjct: 124 VVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLN--MGFIEQVEAIIKHLPTERTTMLF 181

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SAT+ +DI +++R++M +P  I VK   ++   I+  V+ V +EE KF  L D+  +   
Sbjct: 182 SATLPQDIEKLSRQYMQNPEHIEVKAAGLTTRNIEHAVIQV-REENKFSLLKDVLMTENP 240

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
             C+IFC TK+ V+ L+  L    +    +HG M QE+R  VMN+F+ G  R L++TDV 
Sbjct: 241 DSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVA 300

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARGID++ +SLVINYDLP   E+Y+HR GR+GR G KG AI+F+T  +   L +IE++  
Sbjct: 301 ARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIG 360

Query: 386 IKINPMPA 393
            +I  + A
Sbjct: 361 FEIPKIEA 368


>gi|1708152|sp|P20449|DBP5_YEAST PROBABLE ATP-DEPENDENT RNA HELICASE
           DBP5 (HELICASE CA5/6) >gi|2133053|pir||S66920 probable
           RNA helicase CA5/6 - yeast (Saccharomyces cerevisiae)
           >gi|1353268 (U28135) Dbp5p [Saccharomyces cerevisiae]
           >gi|1420175|emb|CAA99237| (Z74954) ORF YOR046c
           [Saccharomyces cerevisiae]
           Length = 482
           
 Score =  257 bits (650), Expect = 9e-68
 Identities = 141/379 (37%), Positives = 236/379 (62%), Gaps = 16/379 (4%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISG--KDVIAQAQSGTGKTATFTIGLLQ 83
           + + L  +LL+GIY+  F+ PS IQ RA+  ++    +++IAQ+QSGTGKTA F++ +L 
Sbjct: 95  DELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLT 154

Query: 84  AIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGC 143
            ++      QA+ L+P+RELA Q  +VV+ +G +  + +  I     + D  +K ++   
Sbjct: 155 RVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLI-----VPDSFEKNKQINA 209

Query: 144 QAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVV 203
           Q + GTPG VLD+++++++Q + +++ VLDEAD +L +  G   Q   +   LPK+ Q+V
Sbjct: 210 QVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQ-GLGDQCIRVKRFLPKDTQLV 268

Query: 204 VVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSL 263
           + SAT    + +  +K + +   + ++ +E++++ IKQ  ++   E  KFD L ++Y  +
Sbjct: 269 LFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLM 328

Query: 264 TITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTD 323
           TI   +IF  TKK  + L  +L      V  +HGD++ +ERD++++DFR G S+VLI+T+
Sbjct: 329 TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN 388

Query: 324 VWARGIDVQQVSLVINYDLPEIIE------NYIHRIGRSGRFGRKGVAINFI-TKADLAK 376
           V ARGID+  VS+V+NYDLP +         YIHRIGR+GRFGRKGVAI+F+  K     
Sbjct: 389 VLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNI 448

Query: 377 LREIEKFY-SIKINPMPAN 394
           L  I+K++  I++  +P +
Sbjct: 449 LSAIQKYFGDIEMTRVPTD 467


>gi|1881268|dbj||AB001488_42 (AB001488) ATP-DEPENDENT RNA HELICASE
           DEAD HOMOLOG. [Bacillus subtilis]
           >gi|2632758|emb|CAB12265| (Z99106) similar to
           ATP-dependent RNA helicase [Bacillus subtilis]
           Length = 511
           
 Score =  257 bits (650), Expect = 9e-68
 Identities = 137/366 (37%), Positives = 224/366 (60%), Gaps = 4/366 (1%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           +  NL  DL++ I   GFE  + IQ++ I   +S KDVI QAQ+GTGKTA F I L++ I
Sbjct: 23  QDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEKI 82

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
           +    ++QA++++PTRELA Q+ + +  +G         I GG+ +   ++ ++K+    
Sbjct: 83  NPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKNP-NI 141

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           + GTPGR+LD I ++ ++  NV  +V+DEADE+L+  +GF   I  I + +P   Q ++ 
Sbjct: 142 IVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLN--MGFIDDIESILSNVPSEHQTLLF 199

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SATM   I  +  +FM +P  + VK  E+++  I+Q+ + V +E  KFDTL  + D  + 
Sbjct: 200 SATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEV-QERKKFDTLTRLLDIQSP 258

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
              ++F  TK++VD L++ L    +A   +HGD+ Q +R   +  F+ G   VL++TDV 
Sbjct: 259 ELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVA 318

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS 385
           ARG+D+  V+ V N+D+P+  E+Y+HRIGR+GR G+ G+A+ FIT  + + LR IE+   
Sbjct: 319 ARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTK 378

Query: 386 IKINPM 391
            K++ M
Sbjct: 379 RKMDRM 384


>gi|3776005|emb|CAA09205| (AJ010466) RNA helicase [Arabidopsis
           thaliana]
           Length = 451
           
 Score =  257 bits (650), Expect = 9e-68
 Identities = 144/367 (39%), Positives = 223/367 (60%), Gaps = 7/367 (1%)

Query: 30  LKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRK 89
           LK +LLR I   GFE PS +Q   I Q I G DVI QA+SG GKTA F +  LQ I+   
Sbjct: 77  LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP 136

Query: 90  KDLQALILSPTRELASQIGQVVKNLGDYM-NVNAFAITGGKTLKDDLKKMQKHGC-QAVS 147
             + AL+L  TRELA QI         Y+ +       GG  +K   K + K+ C   V 
Sbjct: 137 GQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIH-KDLLKNECPHIVV 195

Query: 148 GTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSA 207
           GTPGRVL + +++ L  +NV+  +LDE D++L E+L  ++ + +IF   P + QV++ SA
Sbjct: 196 GTPGRVLALAREKDLSLKNVRHFILDECDKML-ESLDMRRDVQEIFKMTPHDKQVMMFSA 254

Query: 208 TMNKDILEVTRKFMNDPVKILVKRD-EISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTIT 266
           T++K+I  V +KFM DP++I V  + +++L G+ Q+ + + + E K   L D+ D+L   
Sbjct: 255 TLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEME-KNRKLNDLLDALDFN 313

Query: 267 QCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWA 326
           Q VIF  +  + D L++ L+  +F  + +H  M QEER      F+ GH R+L++TD+  
Sbjct: 314 QVVIFVKSVSRADELNKLLVGCHFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVG 373

Query: 327 RGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKA-DLAKLREIEKFYS 385
           RGID+++V++VINYD+P+  + Y+HR+GR+GRFG KG+AI F+  A D   L ++++ + 
Sbjct: 374 RGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQERFE 433

Query: 386 IKINPMP 392
           + I  +P
Sbjct: 434 VDIKELP 440


>gi|3132829 (AF063447) nuclear RNA helicase [Rattus norvegicus]
           Length = 427
           
 Score =  256 bits (648), Expect = 1e-67
 Identities = 138/366 (37%), Positives = 222/366 (59%), Gaps = 5/366 (1%)

Query: 30  LKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRK 89
           LK +LLR I   GFE PS +Q   I Q I G DV+ QA+SG GKTA F +  LQ I+   
Sbjct: 51  LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPIN 110

Query: 90  KDLQALILSPTRELASQIGQVVKNLGDYM-NVNAFAITGGKTLKDDLKKMQKHGCQAVSG 148
             +  L++  TRELA QI    +    YM +V      GG ++K D   ++K+    V G
Sbjct: 111 GQVSVLVMCHTRELAFQISTEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVVVG 170

Query: 149 TPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSAT 208
           TPGR+L +++ + L  RNV+  VLDE D++L E L  ++ + +IF   P   Q ++ SAT
Sbjct: 171 TPGRILALVRSRSLNLRNVKHFVLDECDKML-EQLDMRRDVQEIFRLTPHEKQCMMFSAT 229

Query: 209 MNKDILEVTRKFMNDPVKILVKRD-EISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQ 267
           ++K+I  V RKFM DP+++ V  + +++L G++QY V + K+  K   L D+ D L   Q
Sbjct: 230 LSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKL-KDSEKNRKLFDLLDVLEFNQ 288

Query: 268 CVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWAR 327
            VIF  + ++   L+Q L++ NF  +++H  M QEER      F+    R+L++T+++ R
Sbjct: 289 VVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGR 348

Query: 328 GIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAK-LREIEKFYSI 386
           G+D+++V++V NYD+PE  + Y+HR+ R+GRFG KG+A+ F++  + AK L +++  + +
Sbjct: 349 GMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDENDAKILNDVQDRFEV 408

Query: 387 KINPMP 392
            +  +P
Sbjct: 409 NVAELP 414


>gi|2500529|sp|Q13838|HE47_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE
           P47 >gi|2135840|pir||I37201 nuclear RNA helicase (DEAD
           family) BAT1 - human >gi|587146|emb|CAA85523| (Z37166)
           nuclear RNA helicase (DEAD family) [Homo sapiens]
           Length = 428
           
 Score =  256 bits (647), Expect = 2e-67
 Identities = 137/366 (37%), Positives = 224/366 (60%), Gaps = 5/366 (1%)

Query: 30  LKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRK 89
           LK +LLR I   GFE PS +Q   I Q I G DV+ QA+SG GKTA F +  LQ ++   
Sbjct: 52  LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT 111

Query: 90  KDLQALILSPTRELASQIGQVVKNLGDYM-NVNAFAITGGKTLKDDLKKMQKHGCQAVSG 148
             +  L++  TRELA QI +  +    YM NV      GG ++K D + ++K+    V G
Sbjct: 112 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVG 171

Query: 149 TPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSAT 208
           TPGR+L + + + L  ++++  +LDE D++L E L  ++ + +IF   P   QV++ SAT
Sbjct: 172 TPGRILALARNKSLNLKHIKHFILDECDKML-EQLDMRRDVQEIFRMTPHEKQVMMFSAT 230

Query: 209 MNKDILEVTRKFMNDPVKILVKRD-EISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQ 267
           ++K+I  V RKFM DP++I V  + +++L G++QY V + K+  K   L D+ D L   Q
Sbjct: 231 LSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKL-KDNEKNRKLFDLLDVLEFNQ 289

Query: 268 CVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWAR 327
            VIF  + ++   L+Q L++ NF  +++H  M QEER      F+    R+L++T+++ R
Sbjct: 290 VVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGR 349

Query: 328 GIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAK-LREIEKFYSI 386
           G+D+++V++  NYD+PE  + Y+HR+ R+GRFG KG+AI F++  + AK L +++  + +
Sbjct: 350 GMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEV 409

Query: 387 KINPMP 392
            I+ +P
Sbjct: 410 NISELP 415


>gi|4235116 (AF118128) nuclear RNA helicase Bat1 [Mus musculus]
           Length = 428
           
 Score =  256 bits (647), Expect = 2e-67
 Identities = 137/366 (37%), Positives = 224/366 (60%), Gaps = 5/366 (1%)

Query: 30  LKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRK 89
           LK +LLR I   GFE PS +Q   I Q I G DV+ QA+SG GKTA F +  LQ ++   
Sbjct: 52  LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT 111

Query: 90  KDLQALILSPTRELASQIGQVVKNLGDYM-NVNAFAITGGKTLKDDLKKMQKHGCQAVSG 148
             +  L++  TRELA QI +  +    YM NV      GG ++K D + ++K+    V G
Sbjct: 112 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVG 171

Query: 149 TPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSAT 208
           TPGR+L + + + L  ++++  +LDE D++L E L  ++ + +IF   P   QV++ SAT
Sbjct: 172 TPGRILALARNKSLNLKHIKHFILDECDKML-EQLDMRRDVQEIFRMTPHEKQVMMFSAT 230

Query: 209 MNKDILEVTRKFMNDPVKILVKRD-EISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQ 267
           ++K+I  V RKFM DP++I V  + +++L G++QY V + K+  K   L D+ D L   Q
Sbjct: 231 LSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKL-KDNEKNRKLFDLLDVLEFNQ 289

Query: 268 CVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWAR 327
            VIF  + ++   L+Q L++ NF  +++H  M QEER      F+    R+L++T+++ R
Sbjct: 290 VVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGR 349

Query: 328 GIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAK-LREIEKFYSI 386
           G+D+++V++  NYD+PE  + Y+HR+ R+GRFG KG+AI F++  + AK L +++  + +
Sbjct: 350 GMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEV 409

Query: 387 KINPMP 392
            I+ +P
Sbjct: 410 NISELP 415


>gi|1001719|gnl|PID|d1011207 (D64004) ATP-dependent RNA helicase
           DeaD [Synechocystis sp.]
           Length = 492
           
 Score =  254 bits (643), Expect = 6e-67
 Identities = 135/340 (39%), Positives = 215/340 (62%), Gaps = 4/340 (1%)

Query: 42  GFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTR 101
           GFEAP+ IQ+ AI  ++SG+D++AQ+Q+GTGKTA F + L+  ID  + DLQALIL+PTR
Sbjct: 26  GFEAPTQIQTEAIPLLLSGRDMLAQSQTGTGKTAAFALPLMDRID-PEGDLQALILTPTR 84

Query: 102 ELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKKQM 161
           ELA Q+ + +K+      +    + GG++++  ++ +++ G Q V GTPGRV+D+I ++ 
Sbjct: 85  ELAQQVAEAMKDFSHERRLFILNVYGGQSIERQIRSLER-GVQIVVGTPGRVIDLIDRKK 143

Query: 162 LQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSATMNKDILEVTRKFM 221
           L+   +Q +VLDEADE+LS  +GF   +  I  K P   Q    SATM ++I E+  +F+
Sbjct: 144 LKLETIQWVVLDEADEMLS--MGFIDDVKTILRKTPPTRQTACFSATMPREIKELVNQFL 201

Query: 222 NDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWL 281
           NDP  + VK+ + +   I+Q + +V +   K   L  I +       +IF  TK+    L
Sbjct: 202 NDPALVTVKQTQSTPTRIEQQLYHVPRGWSKAKALQPILEMEDPESAIIFVRTKQTAADL 261

Query: 282 SQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYD 341
           + RL ++  +V   HG++ Q +R+++++ FR G  +++++TD+ ARG+DV  +S V+N+D
Sbjct: 262 TSRLQEAGHSVDEYHGNLSQSQRERLVHRFRDGKIKLVVATDIAARGLDVNNLSHVVNFD 321

Query: 342 LPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIE 381
           LP+  E YIHRIGR+GR G+ G AI  +   D   LR IE
Sbjct: 322 LPDNAETYIHRIGRTGRAGKTGKAIALVEPIDRRLLRSIE 361


>gi|3047117 (AF058919) similar to ATP-dependent RNA helicases
           [Arabidopsis thaliana]
           Length = 499
           
 Score =  254 bits (642), Expect = 8e-67
 Identities = 138/368 (37%), Positives = 225/368 (60%), Gaps = 13/368 (3%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           E   LK +LL GIY  GFE PS IQ  +I   ++G+D++A+A++GTGKTA F I +L+ I
Sbjct: 134 EDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKI 193

Query: 86  DLRKKDLQA-LILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQ 144
           D     +Q   +L  T        QV K LG ++ +     TGG +LKDD+ ++ +    
Sbjct: 194 DQDNNVIQGNCVLDHT-------SQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQP-VH 245

Query: 145 AVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVV 204
            + GTPGR+LD+ KK +   ++  +LV+DEAD+LLS+   F+  +  + + LP++ Q+++
Sbjct: 246 LLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQE--FQPSVEHLISFLPESRQILM 303

Query: 205 VSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLT 264
            SAT    + +   +F+ +P  I +  DE++L+GI Q+   V++ + K   L  ++  L 
Sbjct: 304 FSATFPVTVKDFKDRFLTNPYVINLM-DELTLKGITQFYAFVEERQ-KIHCLNTLFSKLQ 361

Query: 265 ITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDV 324
           I Q +IFCN+  +V+ L++++ +  ++   +H  M Q+ R++V +DFR G  R L+ TD+
Sbjct: 362 INQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL 421

Query: 325 WARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFY 384
           + RGID+Q V++VIN+D P+  E Y+HR+GRSGRFG  G+A+N IT  D   L  IE+  
Sbjct: 422 FTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQEL 481

Query: 385 SIKINPMP 392
             +I  +P
Sbjct: 482 GTEIKQIP 489


>gi|2500530|sp|Q29024|HE47_PIG PROBABLE ATP-DEPENDENT RNA HELICASE
           P47 >gi|2136589|pir||I47126 nuclear RNA helicase (DEAD
           family) BAT1 - pig >gi|509403|emb|CAA84355| (Z34846)
           BAT1 [Sus scrofa]
           Length = 427
           
 Score =  253 bits (639), Expect = 2e-66
 Identities = 135/366 (36%), Positives = 223/366 (60%), Gaps = 5/366 (1%)

Query: 30  LKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRK 89
           LK +LLR I   GFE PS +Q   I Q I G DV+ QA+SG GKTA F +  LQ ++   
Sbjct: 51  LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT 110

Query: 90  KDLQALILSPTRELASQIGQVVKNLGDYM-NVNAFAITGGKTLKDDLKKMQKHGCQAVSG 148
             +  L++  TRELA QI +  +    YM NV      GG ++K D + ++K+    V G
Sbjct: 111 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVG 170

Query: 149 TPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSAT 208
           TPGR+L + + + L  ++++  +LDE D++L E L  ++ + +IF   P   QV++ SAT
Sbjct: 171 TPGRILALARNKSLNLKHIKHFILDECDKML-EQLDMRRDVQEIFRMTPHEKQVMMFSAT 229

Query: 209 MNKDILEVTRKFMNDPVKILVKRD-EISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQ 267
           ++K++  V RKFM DP++I V  + +++L G++QY V + K+  K   L D+ D L   Q
Sbjct: 230 LSKEVRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKL-KDNEKNRKLFDLLDVLEFNQ 288

Query: 268 CVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWAR 327
            VIF  + ++   L+Q L++ NF  +++H  M QEER      F+     +L++T+++ R
Sbjct: 289 VVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRGILVATNLFGR 348

Query: 328 GIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAK-LREIEKFYSI 386
           G+D+++V++  NYD+PE  + Y+HR+ R+GRFG KG+AI F++  + AK L +++  + +
Sbjct: 349 GMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEV 408

Query: 387 KINPMP 392
            I+ +P
Sbjct: 409 NISELP 414


>gi|1905998 (U90426) nuclear RNA helicase [Homo sapiens]
           Length = 427
           
 Score =  252 bits (637), Expect = 3e-66
 Identities = 137/366 (37%), Positives = 219/366 (59%), Gaps = 5/366 (1%)

Query: 30  LKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRK 89
           LK +LLR I   G E PS +Q   I Q I G DV+ QA+SG GKTA F +  LQ I+   
Sbjct: 51  LKPELLRAIVDCGLEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVN 110

Query: 90  KDLQALILSPTRELASQIGQVVKNLGDYM-NVNAFAITGGKTLKDDLKKMQKHGCQAVSG 148
             +  L++  TRELA QI +  +    YM +V      GG ++K D + M+K+    V G
Sbjct: 111 GQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVMKKNCPHVVVG 170

Query: 149 TPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSAT 208
           TPGR+L +++ +    +NV+  VLDE D++L E L  ++ + +IF   P   Q ++ SAT
Sbjct: 171 TPGRILALVRNRSFSLKNVKHFVLDECDKML-EQLDMRRDVQEIFRLTPHEKQCMMFSAT 229

Query: 209 MNKDILEVTRKFMNDPVKILVKRD-EISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQ 267
           ++KDI  V RKFM DP+++ V  + +++L G++QY V + K+  K   L D+ D L   Q
Sbjct: 230 LSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKL-KDSEKNRKLFDLLDVLEFNQ 288

Query: 268 CVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWAR 327
            +IF  + ++   L+Q L++ NF  +++H  M QEER      F+    R+L++T+++ R
Sbjct: 289 VIIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGR 348

Query: 328 GIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAK-LREIEKFYSI 386
           G+D+++V++V NYD+PE  + Y+HR+ R GRFG KG+AI F++  + AK L  ++    +
Sbjct: 349 GMDIERVNIVFNYDMPEDSDTYLHRVARGGRFGTKGLAITFVSDENDAKILNHVQDRCEV 408

Query: 387 KINPMP 392
            +  +P
Sbjct: 409 NVAELP 414


>gi|2500531|sp|Q63413|HE47_RAT PROBABLE ATP-DEPENDENT RNA HELICASE
           P47
           Length = 428
           
 Score =  252 bits (637), Expect = 3e-66
 Identities = 136/366 (37%), Positives = 222/366 (60%), Gaps = 5/366 (1%)

Query: 30  LKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRK 89
           LK +LLR I   GFE PS +Q   I Q I G DV+ QA+SG GKTA F +  LQ ++   
Sbjct: 52  LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT 111

Query: 90  KDLQALILSPTRELASQIGQVVKNLGDYM-NVNAFAITGGKTLKDDLKKMQKHGCQAVSG 148
             +  L++  TRELA QI +  +    YM NV      GG ++K D + ++K+    V G
Sbjct: 112 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVG 171

Query: 149 TPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSAT 208
           TPGR+L + + + L  ++++  +LDE D++L E L  ++ + +IF   P   QV++ SAT
Sbjct: 172 TPGRILALARNKSLNLKHIKHFILDECDKML-EQLDMRRDVQEIFRMTPHEKQVMMFSAT 230

Query: 209 MNKDILEVTRKFMNDPVKILVKRD-EISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQ 267
           ++K+I  V RKFM DP++I V  + +++L G++QY V + K+  K   L D+ D L   Q
Sbjct: 231 LSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKL-KDNEKNRKLFDLLDVLEFNQ 289

Query: 268 CVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWAR 327
            VIF  + ++   L+Q L++ N   +++H  M QEER      F+    R+L++T+++ R
Sbjct: 290 VVIFVKSVQRCIALAQLLVEQNLPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGR 349

Query: 328 GIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAK-LREIEKFYSI 386
           G+D+ +V++  NYD+PE  + Y+HR+ R+GRFG KG+AI F++  + AK L +++  + +
Sbjct: 350 GMDIVRVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEV 409

Query: 387 KINPMP 392
            I+ +P
Sbjct: 410 NISELP 415


>gi|2500532|sp|Q27268|HE47_DROME PROBABLE ATP-DEPENDENT RNA HELICASE
           WM6 >gi|1079062|pir||S51601 DEAD-box RNA helicase WM6 -
           fruit fly (Drosophila melanogaster) >gi|158313 (L06018)
           DECD family putative RNA helicase [Drosophila
           melanogaster] >gi|505583|emb|CAA56197| (X79802) WM6
           [Drosophila melanogaster]
           Length = 424
           
 Score =  247 bits (625), Expect = 7e-65
 Identities = 135/367 (36%), Positives = 220/367 (59%), Gaps = 6/367 (1%)

Query: 30  LKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRK 89
           LK ++LR I   GFE PS +Q   I Q + G D++ QA+SG GKTA F +  LQ ++   
Sbjct: 48  LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSD 107

Query: 90  KDL-QALILSPTRELASQIGQVVKNLGDYM-NVNAFAITGGKTLKDDLKKMQKHGCQAVS 147
            +    L++  TRELA QI +  +    YM  V      GG  ++ D + ++      V 
Sbjct: 108 NNTCHVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGMAIQKDEETLKSGTPHIVV 167

Query: 148 GTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSA 207
           GTPGR+L +I+ + L  + ++  VLDE D++L E L  ++ + +IF   P   QV++ SA
Sbjct: 168 GTPGRILALIRNKKLNLKLLKHFVLDECDKML-EQLDMRRDVQEIFRSTPHGKQVMMFSA 226

Query: 208 TMNKDILEVTRKFMNDPVKILVKRD-EISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTIT 266
           T++KDI  V +KFM DP+++ V  + +++L G++Q+ VN+ KE  K   L ++ D L   
Sbjct: 227 TLSKDIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVNL-KENEKNKKLFELLDVLEFN 285

Query: 267 QCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWA 326
           Q VIF  + ++   LSQ L + NF  + +H  M QEER      F+    R+L++T+++ 
Sbjct: 286 QVVIFVKSVQRCVALSQLLTEQNFPAIGIHRGMTQEERLNRYQQFKDFQKRILVATNLFG 345

Query: 327 RGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAK-LREIEKFYS 385
           RG+D+++V++V NYD+PE  + Y+HR+ R+GRFG KG+AI F++  + AK L E++  + 
Sbjct: 346 RGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNEVQDRFD 405

Query: 386 IKINPMP 392
           + I+ +P
Sbjct: 406 VNISELP 412


>gi|1706338|sp|Q11039|DEAD_MYCTU ATP-DEPENDENT RNA HELICASE DEAD
           HOMOLOG >gi|1480333|emb|CAB00899| (Z77137) deaD
           [Mycobacterium tuberculosis]
           Length = 563
           
 Score =  247 bits (623), Expect = 1e-64
 Identities = 132/350 (37%), Positives = 212/350 (59%), Gaps = 7/350 (2%)

Query: 34  LLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQ 93
           +LR I   G+E+P++IQ+  I  +++G DV+  AQ+GTGKTA F I +L  ID+  K  Q
Sbjct: 24  VLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSKIDITSKVPQ 83

Query: 94  ALILSPTRELASQIGQVVKNLGDYMN-VNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGR 152
           AL+L PTRELA Q+ +     G Y++ +N   I GG +    L  +++ G Q V GTPGR
Sbjct: 84  ALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRR-GAQVVVGTPGR 142

Query: 153 VLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSATMNKD 212
           ++D +++  L    V  LVLDEADE+L  T+GF   +  I ++ P+  QV + SATM   
Sbjct: 143 MIDHLERATLDLSRVDFLVLDEADEML--TMGFADDVERILSETPEYKQVALFSATMPPA 200

Query: 213 ILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQCVIFC 272
           I +++ K+++DP ++  K      E I Q  + V +   K D L  + +       ++F 
Sbjct: 201 IRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVAR---KMDALTRVLEVEPFEAMIVFV 257

Query: 273 NTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQ 332
            TK+  + ++++L    F+  ++ GD+ Q +R++ +   R G   +L++TDV ARG+DV+
Sbjct: 258 RTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAARGLDVE 317

Query: 333 QVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEK 382
           ++S V+NYD+P   E+Y+HRIGR+GR GR G A+ F++  +L  L+ IEK
Sbjct: 318 RISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEK 367


>gi|548730|sp|P25888|RHLE_ECOLI PUTATIVE ATP-DEPENDENT RNA HELICASE
           RHLE >gi|560801 (L02123) ATP-dependent RNA helicase
           [Escherichia coli] >gi|1651360|gnl|PID|d1036449 (D90717)
           Putative ATP-dependent RNA helicase RhlE. [Escherichia
           coli] >gi|1787016 (AE000182) putative ATP-dependent RNA
           helicase [Escherichia coli] >gi|4062355|gnl|PID|d1036443
           (D90716) Putative ATP-dependent RNA helicase RhlE.
           [Escherichia coli]
           Length = 454
           
 Score =  245 bits (618), Expect = 5e-64
 Identities = 131/369 (35%), Positives = 225/369 (60%), Gaps = 10/369 (2%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           +S+ L  D+LR +   G+  P+ IQ +AI  ++ G+D++A AQ+GTGKTA FT+ LLQ +
Sbjct: 4   DSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63

Query: 86  DLR------KKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQ 139
             R      ++ ++ALIL+PTRELA+QIG+ V++   Y+N+ +  + GG ++   + K+ 
Sbjct: 64  ITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL- 122

Query: 140 KHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKN 199
           + G   +  TPGR+LD+  +  ++   V++LVLDEAD +L   +GF   I  +  KLP  
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLD--MGFIHDIRRVLTKLPAK 180

Query: 200 CQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDI 259
            Q ++ SAT + DI  +  K +++P++I V R   + + + Q+V  VDK+  K + L  +
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKR-KRELLSHM 239

Query: 260 YDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVL 319
                  Q ++F  TK   + L+++L +      ++HG+  Q  R + + DF++G  RVL
Sbjct: 240 IGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVL 299

Query: 320 ISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLRE 379
           ++TD+ ARG+D++++  V+NY+LP + E+Y+HRIGR+GR    G A++ +   +   LR+
Sbjct: 300 VATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRD 359

Query: 380 IEKFYSIKI 388
           IEK    +I
Sbjct: 360 IEKLLKKEI 368


>gi|2648271 (AE000949) ATP-dependent RNA helicase, DEAD-family
           (deaD) [Archaeoglobus fulgidus]
           Length = 368
           
 Score =  245 bits (618), Expect = 5e-64
 Identities = 131/363 (36%), Positives = 224/363 (61%), Gaps = 7/363 (1%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISG-KDVIAQAQSGTGKTATFTIGLLQA 84
           E + + ++ L  +   GFE P+ IQ   I +   G KD++ QAQ+G+GKTA F + +L  
Sbjct: 10  EDLGISENGLNAVRRKGFEKPTEIQREIIPRFFEGEKDMVGQAQTGSGKTAAFALPILDL 69

Query: 85  IDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQ 144
           +D R KD+QA++++PTRELA Q+   +++L     V+  A+ GG+ +   +++++K G Q
Sbjct: 70  VDERSKDVQAIVITPTRELALQVKDEIESLRGGKKVHVLAVYGGQPIFPQIERLRK-GVQ 128

Query: 145 AVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVV 204
            V GTPGRV+D ++++ L    V+  VLDEAD +L   +GF   I  I        +V++
Sbjct: 129 IVVGTPGRVIDHLERRTLSLEKVRFFVLDEADRMLD--MGFIDDIERILRHAGAERRVLM 186

Query: 205 VSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLT 264
            SATM  ++L + R++M D  +++    +I+ E ++   + V+ E+ +F+ LC I D   
Sbjct: 187 FSATMPPEVLRLARRYMRD-YEVVRVHSKITPENVEHRCLKVNPEK-RFEHLCRILDENN 244

Query: 265 ITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDV 324
               ++FC TKK+   L +RL    +   +++GD+ Q +R+ ++ +FR G++RVL++TDV
Sbjct: 245 FYG-IVFCQTKKETRELGRRLRARGYKADALNGDIPQHKRESILRNFRKGYTRVLVATDV 303

Query: 325 WARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFY 384
            ARGIDV+ ++ V+NY +P+  E YIHR GR+GR G++G AI F+   +  KL+ IE+  
Sbjct: 304 AARGIDVKDLTHVVNYSIPQDPEAYIHRTGRTGREGKRGKAITFVAPWESRKLKIIERTA 363

Query: 385 SIK 387
            ++
Sbjct: 364 KVR 366


>gi|2313340 (AE000544) ATP-dependent RNA helicase, DEAD-box family
           (deaD) [Helicobacter pylori 26695]
           Length = 492
           
 Score =  244 bits (617), Expect = 6e-64
 Identities = 132/357 (36%), Positives = 215/357 (59%), Gaps = 9/357 (2%)

Query: 28  MNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDL 87
           + LK+ +L+ +Y  GF +PS IQ +AI  ++ G+DVIAQAQ+GTGKTA F + ++  +  
Sbjct: 25  LGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNLK- 83

Query: 88  RKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVS 147
               ++AL+++PTRELA QI   +  LG +       + GG+++K   + ++K+  Q + 
Sbjct: 84  NNHTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNP-QVMI 142

Query: 148 GTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSA 207
            TPGR+LD +K + +     +++VLDE+DE+L   +GF   I +IF  LP   Q+++ SA
Sbjct: 143 ATPGRLLDHLKNERIHKFVPKVVVLDESDEMLD--MGFLDDIEEIFDYLPSEAQILLFSA 200

Query: 208 TMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQ--YVVNVDKEEWKFDTLCDIYDSLTI 265
           TM + I  +  K + +P+KI +    I+   I Q  YV+N   E  + + +  + D+   
Sbjct: 201 TMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVIN---EHERAEAIMRLLDTQAP 257

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
            + ++F  TKK+ D L Q L   N+   ++HGDM Q +R   +  F+   + VL++TDV 
Sbjct: 258 KKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVA 317

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEK 382
           +RG+D+  VS V NY LP   E+YIHRIGR+GR G+KG+AI  +T  +  +L  ++K
Sbjct: 318 SRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374


>gi|3845186 (AE001395) eIF-4A-like DEAD family RNA helicase
           [Plasmodium falciparum]
           Length = 457
           
 Score =  242 bits (611), Expect = 3e-63
 Identities = 136/387 (35%), Positives = 226/387 (58%), Gaps = 26/387 (6%)

Query: 30  LKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRK 89
           LK +LLR I   GFE PS +Q   I   I+G D++ QA+SG GKTA F + +LQ +D  +
Sbjct: 62  LKPELLRAISESGFEHPSEVQQETIPAAITGTDILCQAKSGMGKTAVFVLSILQQLDTNE 121

Query: 90  --------------------KDLQALILSPTRELASQIGQVVKNLGDYM-NVNAFAITGG 128
                               K ++ L L+ TRELA QI         Y+ NV    + GG
Sbjct: 122 NQDMQDTKEMNNDNNNNGDNKFVRCLGLAHTRELAYQIKNEFDRFSKYLKNVRCEVVYGG 181

Query: 129 KTLKDDLKKMQKHGC-QAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQ 187
            ++   +K  ++      + GTPGR+L +I+++ L T  +Q  VLDE D+ L E L  + 
Sbjct: 182 ISMNKHIKLFKEDNIPHIIIGTPGRILALIREKYLITDKIQHFVLDECDKCL-EKLDMRS 240

Query: 188 QIYDIFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKILVKRD-EISLEGIKQYVVNV 246
            +  IF   P   QV+  SATM K++ +V +KF+ +PV+I +  + ++ L G+ Q+ V +
Sbjct: 241 DVQKIFISTPLKKQVMFFSATMAKEMRDVCKKFLQNPVEIFIDDEAKLKLHGLLQHYVKL 300

Query: 247 DKEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDK 306
            +++ K   L +I D+L   Q +IF  +  +   L + L + NF  +++HG ++Q+ER +
Sbjct: 301 QEKD-KTRKLIEILDALEFNQVIIFVKSVTRAITLDKLLTECNFPSIAIHGGLEQQERIE 359

Query: 307 VMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAI 366
             + F+   +R+L+STD++ RGID+++V++VINYD+PE  ++Y+HR+GR+GRFG KG+A+
Sbjct: 360 RYDKFKKFENRILVSTDLFGRGIDIERVNIVINYDMPENSDSYLHRVGRAGRFGTKGLAV 419

Query: 367 NFI-TKADLAKLREIEKFYSIKINPMP 392
            F+ ++ D   L E++  + + I+ MP
Sbjct: 420 TFVSSQEDTLALNEVQTRFEVAISEMP 446


>gi|4154758 (AE001461) ATP-DEPENDENT RNA HELICASE DEAD [Helicobacter
           pylori J99]
           Length = 491
           
 Score =  242 bits (611), Expect = 3e-63
 Identities = 131/357 (36%), Positives = 215/357 (59%), Gaps = 9/357 (2%)

Query: 28  MNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDL 87
           + LK+ +L+ +Y  GF +PS IQ +AI  ++ G+DVIAQAQ+GTGKTA F + ++  +  
Sbjct: 25  LGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNLK- 83

Query: 88  RKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVS 147
               ++AL+++PTRELA QI   +  LG +       + GG+++K   + ++K+  Q + 
Sbjct: 84  NNHTIKALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNP-QVMI 142

Query: 148 GTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSA 207
            TPGR+LD +K + +     +++VLDE+DE+L   +GF   I +IF  LP   Q+++ SA
Sbjct: 143 ATPGRLLDHLKNERIHKFVPKVVVLDESDEMLD--MGFLDDIEEIFDYLPSEAQILLFSA 200

Query: 208 TMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQ--YVVNVDKEEWKFDTLCDIYDSLTI 265
           TM + I  +  K + +P+KI +    I+   I Q  YV+N   E  + + +  + D+   
Sbjct: 201 TMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVIN---EHERAEAIMRLLDTQAP 257

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
            + ++F  TKK+ D L Q L   N+   ++HGDM Q +R   +  F+   + VL++TDV 
Sbjct: 258 EKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVA 317

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEK 382
           +RG+D+  VS V +Y LP   E+YIHRIGR+GR G+KG+AI  +T  +  +L  ++K
Sbjct: 318 SRGLDISGVSHVFSYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQK 374


>gi|2408027|emb|CAB16225| (Z99162) atp-dependent rna helicase
           [Schizosaccharomyces pombe]
           Length = 434
           
 Score =  241 bits (609), Expect = 6e-63
 Identities = 136/368 (36%), Positives = 224/368 (59%), Gaps = 7/368 (1%)

Query: 30  LKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRK 89
           LK +LLR I   GFE PS +Q   I Q I G DV+ QA+SG GKTA F +  LQ I+   
Sbjct: 58  LKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIEPVD 117

Query: 90  KDLQALILSPTRELASQIGQVVKNLGDYM-NVNAFAITGGKTLKDDLK--KMQKHGCQAV 146
            ++  L+L  TRELA QI         Y+ +V      GG  +K D++  K +      V
Sbjct: 118 GEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIV 177

Query: 147 SGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVS 206
             TPGR+  ++++++L+  +V+  VLDE D+LL E++  ++ I ++F   P   QV++ S
Sbjct: 178 VATPGRLNALVREKILKVNSVKHFVLDECDKLL-ESVDMRRDIQEVFRATPPQKQVMMFS 236

Query: 207 ATMNKDILEVTRKFMNDPVKILVKRD-EISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           AT++ +I  + +KFM +P++I V  + +++L G++Q+ V ++ E+ K   + D+ DSL  
Sbjct: 237 ATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLE-EKAKNRKINDLLDSLEF 295

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
            Q VIF  +  + + L + L + NF  + +HG + QEER K    F+    R+ ++TDV+
Sbjct: 296 NQVVIFVKSVSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKRICVATDVF 355

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINF-ITKADLAKLREIEKFY 384
            RGID+++V++VINYD+P+  ++Y+HR+GR+GRFG KG+AI F  ++ D   L +I++ +
Sbjct: 356 GRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFSSSEEDSQILDKIQERF 415

Query: 385 SIKINPMP 392
            + I  +P
Sbjct: 416 EVNITELP 423


>gi|2500540|sp|Q58083|Y669_METJA PUTATIVE ATP-DEPENDENT RNA HELICASE
           MJ0669 >gi|2127878|pir||E64383 eIF-4A family probable
           ATP-dependent RNA helicase homolog - Methanococcus
           jannaschii >gi|1591383 (U67514) ATP-dependent RNA
           helicase, DEAD-family (deaD) [Methanococcus jannaschii]
           Length = 367
           
 Score =  240 bits (606), Expect = 1e-62
 Identities = 136/365 (37%), Positives = 224/365 (61%), Gaps = 12/365 (3%)

Query: 28  MNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGK-DVIAQAQSGTGKTATFTIGLLQAID 86
           +NL D++L  I + GFE P+ IQ + I   ++ + +++AQA++G+GKTA+F I L++ ++
Sbjct: 11  LNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVN 70

Query: 87  LRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAV 146
                ++A+IL+PTRELA Q+   +++L    N+    I GGK +   +K ++      V
Sbjct: 71  -ENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKN--ANIV 127

Query: 147 SGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVS 206
            GTPGR+LD I +  L  +NV+  +LDEADE+L+  +GF + +  I     K+ ++++ S
Sbjct: 128 VGTPGRILDHINRGTLNLKNVKYFILDEADEMLN--MGFIKDVEKILNACNKDKRILLFS 185

Query: 207 ATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTIT 266
           ATM ++IL + +K+M D   I  K +      I+Q  V V++ E +F+ LC +  +    
Sbjct: 186 ATMPREILNLAKKYMGDYSFIKAKINA----NIEQSYVEVNENE-RFEALCRLLKNKEFY 240

Query: 267 QCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWA 326
             ++FC TK+    L+  L    F   ++HGD+ Q +R+KV+  F+    R+LI+TDV +
Sbjct: 241 G-LVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMS 299

Query: 327 RGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYSI 386
           RGIDV  ++ VINY LP+  E+Y+HRIGR+GR G+KG AI+ I + +  KLR IE+   +
Sbjct: 300 RGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKL 359

Query: 387 KINPM 391
           KI  +
Sbjct: 360 KIKKL 364


>gi|2621248 (AE000807) ATP-dependent RNA helicase, eIF-4A family
           [Methanobacterium thermoautotrophicum]
           Length = 425
           
 Score =  240 bits (606), Expect = 1e-62
 Identities = 133/367 (36%), Positives = 221/367 (59%), Gaps = 9/367 (2%)

Query: 29  NLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLR 88
           ++  D+ R +   GFE+ + IQ+  +   + G DV+ +AQ+GTGKTA F I +L+ ++  
Sbjct: 10  DISGDINRALDDMGFESTTPIQALTLPVTLDGMDVVGEAQTGTGKTAAFAIPVLENLEAE 69

Query: 89  KKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVSG 148
           +   QALI+ PTREL  Q+ + +K +G YM V   A+ GG+++ + + ++++ G   +  
Sbjct: 70  RVP-QALIICPTRELCLQVSEEIKRIGKYMKVKVLAVYGGQSIGNQIAQLRR-GVHVIVA 127

Query: 149 TPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSAT 208
           TPGR++D I++  +    +  +VLDEADE+L+  +GF   I  I + +P+  Q ++ SAT
Sbjct: 128 TPGRLIDHIERGTVDLGGISTVVLDEADEMLN--MGFIDDIERILSHVPERRQTMLFSAT 185

Query: 209 MNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQC 268
           ++K IL + RK+M +P  + V++       I ++     +EE K + L  I  S  I   
Sbjct: 186 VSKPILRIARKYMRNPQVMRVEKKHSPK--IDEFYFKT-REEDKVELLDWILSSNNIRMG 242

Query: 269 VIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARG 328
           +IFCNTK++V  L ++L +  ++   +HGD+ Q +R++VM  FR G   +L++TDV ARG
Sbjct: 243 LIFCNTKRRVQRLRRQLNRMGYSADEIHGDLSQSKRERVMERFRRGDFSLLVATDVAARG 302

Query: 329 IDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYS--I 386
           I V  V  V+NYDLP   E Y+HRIGR+GR G  G +   +  +++ +LR I+ F    I
Sbjct: 303 IHVPDVEAVVNYDLPFENEYYVHRIGRTGRAGSSGKSFTLVVGSEVHRLRRIQSFTGKRI 362

Query: 387 KINPMPA 393
           K + MP+
Sbjct: 363 KQSNMPS 369


>gi|539961|pir||A42811 translation initiation factor eIF-4A homolog
           - rat >gi|205942 (M75168) liver nuclear protein p47
           [Rattus norvegicus]
           Length = 399
           
 Score =  240 bits (605), Expect = 2e-62
 Identities = 129/338 (38%), Positives = 205/338 (60%), Gaps = 4/338 (1%)

Query: 30  LKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRK 89
           LK +LLR I   GFE PS +Q   I Q I G DV+ QA+SG GKTA F +  LQ ++   
Sbjct: 52  LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT 111

Query: 90  KDLQALILSPTRELASQIGQVVKNLGDYM-NVNAFAITGGKTLKDDLKKMQKHGCQAVSG 148
             +  L++  TRELA QI +  +    YM NV      GG ++K D + ++K+    V G
Sbjct: 112 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVG 171

Query: 149 TPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSAT 208
           TPGR+L + + + L  ++++  +LDE D++L E L  ++ + +IF   P   QV++ SAT
Sbjct: 172 TPGRILALARNKSLNLKHIKHFILDECDKML-EQLDMRRDVQEIFRMTPHEKQVMMFSAT 230

Query: 209 MNKDILEVTRKFMNDPVKILVKRD-EISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQ 267
           ++K+I  V RKFM DP++I V  + +++L G++QY V + K+  K   L D+ D L   Q
Sbjct: 231 LSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKL-KDNEKNRKLFDLLDVLEFNQ 289

Query: 268 CVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWAR 327
            VIF  + ++   L+Q L++ N   +++H  M QEER      F+    R+L++T+++ R
Sbjct: 290 VVIFVKSVQRCIALAQLLVEQNLPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGR 349

Query: 328 GIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVA 365
           G+D+ +V++  NYD+PE  + Y+HR+ R+GRFG KG+A
Sbjct: 350 GMDIVRVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA 387


>gi|2500534|sp|Q07478|HE47_YEAST PROBABLE ATP-DEPENDENT RNA HELICASE
           P47 HOMOLOG >gi|2131326|pir||S67620 hypothetical protein
           YDL084w - yeast (Saccharomyces cerevisiae)
           >gi|1431108|emb|CAA98650| (Z74132) ORF YDL084w
           [Saccharomyces cerevisiae]
           Length = 446
           
 Score =  239 bits (604), Expect = 2e-62
 Identities = 132/368 (35%), Positives = 218/368 (58%), Gaps = 7/368 (1%)

Query: 30  LKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRK 89
           LK +L R I   GFE PS +Q   I Q I G DV+ QA+SG GKTA F +  LQ +D   
Sbjct: 69  LKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVP 128

Query: 90  KDLQALILSPTRELASQIGQVVKNLGDYM-NVNAFAITGGKTLKDD--LKKMQKHGCQAV 146
            ++  +++   RELA QI         YM +V      GG  +  D  L K +      V
Sbjct: 129 GEVAVVVICNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTPISKDAELLKNKDTAPHIV 188

Query: 147 SGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVS 206
             TPGR+  +++++ +   +V+  V+DE D++L E L  ++ + +IF   P++ QV++ S
Sbjct: 189 VATPGRLKALVREKYIDLSHVKNFVIDECDKVLEE-LDMRRDVQEIFRATPRDKQVMMFS 247

Query: 207 ATMNKDILEVTRKFMNDPVKILVKRD-EISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           AT++++I  + R+F+ +P++I V  + +++L G++QY + +++ E K   L  + D L  
Sbjct: 248 ATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLEERE-KNRKLAQLLDDLEF 306

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
            Q +IF  +  + + L++ L  SNF  +++HG MKQEER      F+    R+ +STDV+
Sbjct: 307 NQVIIFVKSTTRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKDFEKRICVSTDVF 366

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFI-TKADLAKLREIEKFY 384
            RGID+++++L INYDL    + Y+HR+GR+GRFG KG+AI+F+ +K D   L +I++ +
Sbjct: 367 GRGIDIERINLAINYDLTNEADQYLHRVGRAGRFGTKGLAISFVSSKEDEEVLAKIQERF 426

Query: 385 SIKINPMP 392
            +KI   P
Sbjct: 427 DVKIAEFP 434


>gi|2190968 (AF002677) DEAD-box RNA helicase [Dictyostelium
           discoideum]
           Length = 437
           
 Score =  239 bits (603), Expect = 3e-62
 Identities = 138/353 (39%), Positives = 216/353 (61%), Gaps = 16/353 (4%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQII-SGKDVIAQAQSGTGKTATFTIGLLQA 84
           E + LK +LL+G+Y+ G+  PS IQ   +  II S  ++IAQ+QSGTGKTA FT+G+L  
Sbjct: 73  EELGLKPELLKGVYAMGYNKPSKIQEATLPIIIQSPNNLIAQSQSGTGKTAAFTLGMLNC 132

Query: 85  IDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQ 144
           +D      QA+ +SPT+ELA Q  +V+  +G + N+             +++  +    Q
Sbjct: 133 VDPSINAPQAICISPTKELALQTFEVISKIGQFSNIKPLLYI------SEIEVPKNVTNQ 186

Query: 145 AVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVV 204
            + GTPG++L+ + K+ L  + ++M+VLDEAD  + +      QI  I   LP N +V +
Sbjct: 187 VIIGTPGKILENVIKKQLSVKFLKMVVLDEAD-FIVKMKNVPNQIAMINRLLPSNVKVCL 245

Query: 205 VSATMNKDILEVTRKFMNDP-VKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSL 263
            SAT +  + E+ +K + DP   I +KR E+S+E I QY ++   E+ K   L DIY  +
Sbjct: 246 FSATFSMGVEELIKKIVQDPYTSIRLKRQELSVEKIHQYFIDCGSEDNKALILSDIYGFI 305

Query: 264 TITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHG-DMKQEERDKVMNDFRTGHSRVLIST 322
           ++ Q ++F +T      + Q+++    +V  ++G D+  EER K + DF+ G S+VLI+T
Sbjct: 306 SVGQSIVFVHTIATAKSVHQKMVDEGHSVSLLYGKDLTTEERFKQIKDFKDGKSKVLITT 365

Query: 323 DVWARGIDVQQVSLVINYDLP--EIIE----NYIHRIGRSGRFGRKGVAINFI 369
           +V ARGID+ QVSLVINYD+P  E+ +    +Y+HRIGR GRFGR GVA++F+
Sbjct: 366 NVLARGIDIPQVSLVINYDVPLDEMGKPDPVHYLHRIGRVGRFGRSGVALSFV 418


>gi|1169261|sp|P44586|DEAD_HAEIN ATP-DEPENDENT RNA HELICASE DEAD
           HOMOLOG >gi|1073892|pir||F64056 ATP-dependent RNA
           helicase (deaD) homolog - Haemophilus influenzae (strain
           Rd KW20) >gi|1573195 (U32709) ATP-dependent RNA helicase
           (deaD) [Haemophilus influenzae Rd]
           Length = 613
           
 Score =  238 bits (601), Expect = 5e-62
 Identities = 135/366 (36%), Positives = 210/366 (56%), Gaps = 11/366 (3%)

Query: 28  MNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDL 87
           + L + +L+ +   GFE PS IQ   I  +++G DV+  AQ+G+GKTA F + LL  ID 
Sbjct: 10  LGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLLAQIDP 69

Query: 88  RKKDLQALILSPTRELASQIGQVVKNLGDY-MNVNAFAITGGKTLKDDLKKMQKHGCQAV 146
            +K  Q L+++PTRELA Q+    +    Y        + GG+     L+ + K G Q V
Sbjct: 70  SEKHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRAL-KQGAQVV 128

Query: 147 SGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVS 206
            GTPGR+LD I++  L    ++ +VLDEADE+L   +GF   +  + A+LP+N Q  + S
Sbjct: 129 VGTPGRILDHIRRGTLNLSELRFIVLDEADEML--RMGFIDDVETVMAELPENHQTALFS 186

Query: 207 ATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQ---YVVNVDKEEWKFDTLCDIYDSL 263
           ATM + I  +T++FMNDP ++ +K +  +   I Q   YV  V K E     L    +  
Sbjct: 187 ATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNE----ALLRFLEVE 242

Query: 264 TITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTD 323
                +IF  TK     +++ L ++ F   +++GDM Q+ R++ ++  R G   ++++TD
Sbjct: 243 DFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATD 302

Query: 324 VWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKF 383
           V ARGID++++SLV+NYD+P   E+Y+HRIGR+GR GR G A+ F+   +   LR IE  
Sbjct: 303 VAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHL 362

Query: 384 YSIKIN 389
               IN
Sbjct: 363 MKKGIN 368


>gi|96321|pir||A42357 probable ATP-dependent RNA helicase deaD -
           Escherichia coli >gi|145727 (M63288) deaD [Escherichia
           coli]
           Length = 571
           
 Score =  237 bits (599), Expect = 8e-62
 Identities = 136/375 (36%), Positives = 219/375 (58%), Gaps = 11/375 (2%)

Query: 28  MNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDL 87
           + LK  +L  +   G+E PS IQ+  I  +++G+DV+  AQ+G+GKTA F++ LLQ +D 
Sbjct: 28  LGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDP 87

Query: 88  RKKDLQALILSPTRELASQIGQVVKNLGDYMN-VNAFAITGGKTLKDDLKKMQKHGCQAV 146
             K  Q L+L+PTRELA Q+ + + +   +M  VN  A+ GG+     L+ +++ G Q V
Sbjct: 88  ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ-GPQIV 146

Query: 147 SGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVS 206
            GTPGR+LD +K+  L    +  LVLDEADE+L   +GF + +  I A++P+  Q  + S
Sbjct: 147 VGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR--MGFIEDVETIMAQIPEGHQTALFS 204

Query: 207 ATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEW---KFDTLCDIYDSL 263
           ATM + I  +TR+FM +P ++ ++    +   I Q    V    W   K + L    ++ 
Sbjct: 205 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTV----WGMRKNEALVRFLEAE 260

Query: 264 TITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTD 323
                +IF  TK     +++ L ++ +   +++GDM Q  R++ +   + G   +LI+TD
Sbjct: 261 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 320

Query: 324 VWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKF 383
           V ARG+DV+++SLV+NYD+P   E+Y+HRIGR+GR GR G A+ F+   +   LR IE+ 
Sbjct: 321 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 380

Query: 384 YSIKINPMPANFAEL 398
             + I  +    AEL
Sbjct: 381 MKLTIPEVELPNAEL 395


>gi|461923|sp|P23304|DEAD_ECOLI ATP-DEPENDENT RNA HELICASE DEAD
           Length = 646
           
 Score =  237 bits (599), Expect = 8e-62
 Identities = 136/375 (36%), Positives = 219/375 (58%), Gaps = 11/375 (2%)

Query: 28  MNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDL 87
           + LK  +L  +   G+E PS IQ+  I  +++G+DV+  AQ+G+GKTA F++ LLQ +D 
Sbjct: 28  LGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDP 87

Query: 88  RKKDLQALILSPTRELASQIGQVVKNLGDYMN-VNAFAITGGKTLKDDLKKMQKHGCQAV 146
             K  Q L+L+PTRELA Q+ + + +   +M  VN  A+ GG+     L+ +++ G Q V
Sbjct: 88  ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ-GPQIV 146

Query: 147 SGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVS 206
            GTPGR+LD +K+  L    +  LVLDEADE+L   +GF + +  I A++P+  Q  + S
Sbjct: 147 VGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR--MGFIEDVETIMAQIPEGHQTALFS 204

Query: 207 ATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEW---KFDTLCDIYDSL 263
           ATM + I  +TR+FM +P ++ ++    +   I Q    V    W   K + L    ++ 
Sbjct: 205 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTV----WGMRKNEALVRFLEAE 260

Query: 264 TITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTD 323
                +IF  TK     +++ L ++ +   +++GDM Q  R++ +   + G   +LI+TD
Sbjct: 261 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 320

Query: 324 VWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKF 383
           V ARG+DV+++SLV+NYD+P   E+Y+HRIGR+GR GR G A+ F+   +   LR IE+ 
Sbjct: 321 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 380

Query: 384 YSIKINPMPANFAEL 398
             + I  +    AEL
Sbjct: 381 MKLTIPEVELPNAEL 395


>gi|606102 (U18997) two frameshifts relative to ECODEAD [Escherichia
           coli] >gi|1789553 (AE000397) inducible ATP-independent
           RNA helicase [Escherichia coli]
           Length = 646
           
 Score =  237 bits (599), Expect = 8e-62
 Identities = 136/375 (36%), Positives = 219/375 (58%), Gaps = 11/375 (2%)

Query: 28  MNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDL 87
           + LK  +L  +   G+E PS IQ+  I  +++G+DV+  AQ+G+GKTA F++ LLQ +D 
Sbjct: 28  LGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDP 87

Query: 88  RKKDLQALILSPTRELASQIGQVVKNLGDYMN-VNAFAITGGKTLKDDLKKMQKHGCQAV 146
             K  Q L+L+PTRELA Q+ + + +   +M  VN  A+ GG+     L+ +++ G Q V
Sbjct: 88  ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ-GPQIV 146

Query: 147 SGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVS 206
            GTPGR+LD +K+  L    +  LVLDEADE+L   +GF + +  I A++P+  Q  + S
Sbjct: 147 VGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR--MGFIEDVETIMAQIPEGHQTALFS 204

Query: 207 ATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEW---KFDTLCDIYDSL 263
           ATM + I  +TR+FM +P ++ ++    +   I Q    V    W   K + L    ++ 
Sbjct: 205 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTV----WGMRKNEALVRFLEAE 260

Query: 264 TITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTD 323
                +IF  TK     +++ L ++ +   +++GDM Q  R++ +   + G   +LI+TD
Sbjct: 261 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 320

Query: 324 VWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKF 383
           V ARG+DV+++SLV+NYD+P   E+Y+HRIGR+GR GR G A+ F+   +   LR IE+ 
Sbjct: 321 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 380

Query: 384 YSIKINPMPANFAEL 398
             + I  +    AEL
Sbjct: 381 MKLTIPEVELPNAEL 395


>gi|2500533|sp|Q18212|HE47_CAEEL PROBABLE ATP-DEPENDENT RNA HELICASE
           P47 HOMOLOG >gi|3874509|emb|CAA91120| (Z54327) similar
           to translation initiation factor eIF-4A; cDNA EST
           EMBL:Z14797 comes from this gene; cDNA EST EMBL:T01553
           comes from this gene; cDNA EST EMBL:T00043 comes from
           this gene; cDNA EST CEESF23F comes from this gene; ...
           Length = 425
           
 Score =  236 bits (597), Expect = 1e-61
 Identities = 130/366 (35%), Positives = 215/366 (58%), Gaps = 5/366 (1%)

Query: 30  LKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRK 89
           LK ++LR I   GFE PS +Q   I Q I G DV+ QA+SG GKTA F I  LQ ++   
Sbjct: 48  LKPEILRAIGDCGFEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVITTLQQLEPVD 107

Query: 90  KDLQALILSPTRELASQIGQVVKNLGDYM-NVNAFAITGGKTLKDDLKKMQKHGCQAVSG 148
            ++  + +  TRELA QI +  +    Y+  V      GG  +K D +++       V G
Sbjct: 108 GEVSVVCMCHTRELAFQISKEYERFSKYLPGVKVAVFFGGMAIKKDEERLANDCPHIVVG 167

Query: 149 TPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSAT 208
           TPGR+L + +   L+   V+  VLDE D+++ +    ++ + +I    P+  QV++ SAT
Sbjct: 168 TPGRMLALARSGKLKLDKVKYFVLDECDKMIGDA-DMRRDVQEIVKMTPQQKQVMMFSAT 226

Query: 209 MNKDILEVTRKFMNDPVKILVKRD-EISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQ 267
           + K++  V ++FM DP+++ V  + +++L G++Q+ V + KE  K   L ++ D+L   Q
Sbjct: 227 LPKELRTVCKRFMQDPMEVYVDDEAKLTLHGLQQHYVKL-KEAEKNRRLLNLLDALEFNQ 285

Query: 268 CVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWAR 327
            VIF    K+ + L Q L + NF  +++H  M QEER      F+    R+L++TD++ R
Sbjct: 286 VVIFVKAVKRCEALHQLLTEQNFPSIAIHRQMAQEERLSRYQAFKDFQKRILVATDLFGR 345

Query: 328 GIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAK-LREIEKFYSI 386
           G+D+++V++V NYD+PE  ++Y+HR+ R+GRFG KG+AI F++  + AK L  ++  + I
Sbjct: 346 GMDIERVNIVFNYDMPEDSDSYLHRVARAGRFGTKGLAITFVSDENDAKTLNSVQDRFDI 405

Query: 387 KINPMP 392
            I  +P
Sbjct: 406 SITELP 411


>gi|461924|sp|P33906|DEAD_KLEPN ATP-DEPENDENT RNA HELICASE DEAD
           >gi|625758|pir||JX0314 DEAD box protein - Klebsiella
           pneumoniae >gi|149184 (L08387) RNA helicase [Klebsiella
           pneumoniae]
           Length = 659
           
 Score =  232 bits (586), Expect = 3e-60
 Identities = 133/372 (35%), Positives = 214/372 (56%), Gaps = 5/372 (1%)

Query: 28  MNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDL 87
           + LK  +L  +   G+E PS IQ+  I  ++ G+DV+  AQ+G+GKTA F++ LL  ID 
Sbjct: 27  LGLKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNIDP 86

Query: 88  RKKDLQALILSPTRELASQIGQVVKNLGDYMN-VNAFAITGGKTLKDDLKKMQKHGCQAV 146
             +  Q L+L+PTRELA Q+ + +     +M  VN  A+ GG+     L+ +++ G Q V
Sbjct: 87  ELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQ-GPQIV 145

Query: 147 SGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVS 206
            GTPGR+LD +K+  L    +  LVLDEADE+L   +GF + +  I A++P+  Q  + S
Sbjct: 146 VGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR--MGFIEDVETIMAQIPEGHQTALFS 203

Query: 207 ATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTIT 266
           ATM + I  +TR+FM +P ++ ++    +   I Q          K + L    ++    
Sbjct: 204 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGMR-KNEALVRFLEAEDFD 262

Query: 267 QCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWA 326
             +IF  TK     +++ L ++ +   +++GDM Q  R++ +   + G   +LI+TDV A
Sbjct: 263 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQALERLKDGRLDILIATDVAA 322

Query: 327 RGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYSI 386
           RG+DV+++SLV+NYD+P   E+Y+HRIGR+GR GR G A+ F+   +   LR IE+   +
Sbjct: 323 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 382

Query: 387 KINPMPANFAEL 398
            I  +    AEL
Sbjct: 383 TIPEVELPNAEL 394


>gi|476338 (U08102) putative RNA helicase [Caenorhabditis elegans]
           Length = 417
           
 Score =  228 bits (576), Expect = 4e-59
 Identities = 129/366 (35%), Positives = 212/366 (57%), Gaps = 12/366 (3%)

Query: 30  LKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRK 89
           LK ++LR I   GFE PS +Q   I Q I G DV+ QA+SG GKTA F I  LQ ++   
Sbjct: 47  LKPEILRAIGDCGFEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVITTLQQLEPVD 106

Query: 90  KDLQALILSPTRELASQIGQVVKNLGDYM-NVNAFAITGGKTLKDDLKKMQKHGCQAVSG 148
            ++  + +  TRELA QI +  +    Y+  V      GG  +K D +++       V G
Sbjct: 107 GEVSVVCMCHTRELAFQISKEYERFSKYLPGVKVAVFFGGMAIKKDEERLANDCPHIVVG 166

Query: 149 TPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSAT 208
           TPGR+L + +   L+   V+  VLDE D+++ +         D+   + +  QV++ SAT
Sbjct: 167 TPGRMLALARSGKLKLDKVKYFVLDECDKMIGDA--------DMRRDVQEIKQVMMFSAT 218

Query: 209 MNKDILEVTRKFMNDPVKILVKRD-EISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQ 267
           + K++  V ++FM DP+++ V  + +++L G++Q+ V + KE  K   L ++ D+L   Q
Sbjct: 219 LPKELRTVCKRFMQDPMEVYVDDEAKLTLHGLQQHYVKL-KEAEKNRRLLNLLDALEFNQ 277

Query: 268 CVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWAR 327
            VIF    K+ + L Q L + NF  +++H  M QEER      F+    R+L++TD++ R
Sbjct: 278 VVIFVKAVKRCEALHQLLTEQNFPSIAIHRQMAQEERLSRYQAFKDFQKRILVATDLFGR 337

Query: 328 GIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAK-LREIEKFYSI 386
           G+D+++V++V NYD+PE  ++Y+HR+ R+GRFG KG+AI F++  + AK L  ++  + I
Sbjct: 338 GMDIERVNIVFNYDMPEDSDSYLHRVARAGRFGTKGLAITFVSDENDAKTLNSVQDRFDI 397

Query: 387 KINPMP 392
            I  +P
Sbjct: 398 SITELP 403


>gi|3861207|emb|CAA15107| (AJ235272) PUTATIVE ATP-DEPENDENT RNA
           HELICASE RHLE (rhlE) [Rickettsia prowazekii]
           Length = 407
           
 Score =  227 bits (573), Expect = 9e-59
 Identities = 124/357 (34%), Positives = 218/357 (60%), Gaps = 7/357 (1%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           ++ NL  +L+  + +     P+ IQ ++I   +SG D++A +Q+G+GKT  + + L+ A 
Sbjct: 2   KNFNLSKELIIALETMNITEPTEIQKQSIPVAMSGADILASSQTGSGKTLAYLLPLIDAF 61

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
              K    ALIL PTRELA+QI   +  +     +N+  + GG+ +     +++K+  + 
Sbjct: 62  I--KNKTTALILVPTRELATQIHSTLNKVTTAYKMNSAVLIGGEPMFKQFMQLKKNP-KV 118

Query: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVV 205
           + GTPGR+++ + ++ L+  ++ ++VLDE D +L   +G K+Q+ +I   LP+  QV++ 
Sbjct: 119 IIGTPGRIIEHLNRRSLKIEHIGIIVLDEMDRMLD--MGMKEQLEEINKFLPEKRQVLMF 176

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
           SATM K I+ V++K++N+PV+I+V     +   IKQ +++V  +E KF  L     +  +
Sbjct: 177 SATMPKHIIAVSQKYLNNPVRIMVGATNKAAAEIKQELMHVSNKE-KFSELTKQLGN-RV 234

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
              +IF  TK+  D L++ L   N    ++HGD+ Q +R++V+  FR  + R++++TDV 
Sbjct: 235 GSVIIFVKTKRSADQLAKMLKYENHKAEAIHGDLSQSQRERVILSFRKLNHRIMVATDVA 294

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEK 382
           ARG+D+     VINYDLP   E+Y+HRIGR+GR G  G A++FI+  D+ + R I++
Sbjct: 295 ARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGAIGHALSFISPDDVVRWRAIDR 351


>gi|3879543|emb|CAA90406| (Z50071) similar to ATP-dependent
           helicase; cDNA EST EMBL:D73826 comes from this gene
           [Caenorhabditis elegans]
           Length = 638
           
 Score =  224 bits (564), Expect = 1e-57
 Identities = 142/398 (35%), Positives = 223/398 (55%), Gaps = 31/398 (7%)

Query: 28  MNLKDDLLRGIYSYGFEAPSSIQSRAITQIISG--KDVIAQAQSGTGKTATFTIGLLQAI 85
           + LK ++L+ + +  F+ P+ IQ  A+  ++     ++IAQAQSGTGKTA F + +L  I
Sbjct: 239 LRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLTMLCRI 298

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYM-NVNA-FAITGGKTLKDDLKKMQKHGC 143
           D+     Q + L+PT ELA QIG+VV+ +G ++ N+   +AI GG       +K+ +   
Sbjct: 299 DVNLMCPQCICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAAMRGRKLTE--- 355

Query: 144 QAVSGTPGRVLDMIKK-QMLQTRNVQMLVLDEADELLSETLGFKQ---QIYDIFAKLPKN 199
           Q V GTPG   D ++K + +    ++ LVLDEAD ++    GF      IY++      +
Sbjct: 356 QIVIGTPGITRDYLQKYKCIDPSKIRCLVLDEADVMIYHQ-GFTDISTTIYNMVEDASDS 414

Query: 200 CQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDI 259
            Q ++ SAT ++ ++    K + + + +++KR+E +L  IKQ+ V     + K+  + ++
Sbjct: 415 VQSMLFSATYDEPVINFATKIIKNAIVVMLKREEQALPNIKQFYVQCACRDSKYAAIVNL 474

Query: 260 YDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVL 319
           Y  L +   VIFC+TK  V WL + +      V  +HGDM   ER   +  F+ G  +VL
Sbjct: 475 YSGLAVASSVIFCHTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIHFKRGDFKVL 534

Query: 320 ISTDVWARGIDVQQVSLVINYDLP-----------------EIIENYIHRIGRSGRFGRK 362
           I+T+V+ARGIDV QVS+VINYDLP                    E Y+HRIGR+GRFG+ 
Sbjct: 535 ITTNVFARGIDVAQVSVVINYDLPIKYTDEGTPMVVDGFTQPDCETYLHRIGRTGRFGKT 594

Query: 363 GVAINFITKAD-LAKLREIEKFYSIKINPM-PANFAEL 398
           G+AIN I   D +  +  +E  + +KI  M P+N  EL
Sbjct: 595 GIAINLIDSEDSMNMINVLENHFQMKIARMDPSNLVEL 632


>gi|3879544|emb|CAA90407| (Z50071) similar to ATP-dependent helicase
           (DEAD box); cDNA EST EMBL:D27789 comes from this gene;
           cDNA EST EMBL:D27790 comes from this gene
           [Caenorhabditis elegans]
           Length = 613
           
 Score =  224 bits (564), Expect = 1e-57
 Identities = 142/398 (35%), Positives = 223/398 (55%), Gaps = 31/398 (7%)

Query: 28  MNLKDDLLRGIYSYGFEAPSSIQSRAITQIISG--KDVIAQAQSGTGKTATFTIGLLQAI 85
           + LK ++L+ + +  F+ P+ IQ  A+  ++     ++IAQAQSGTGKTA F + +L  I
Sbjct: 214 LRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLTMLCRI 273

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYM-NVNA-FAITGGKTLKDDLKKMQKHGC 143
           D+     Q + L+PT ELA QIG+VV+ +G ++ N+   +AI GG       +K+ +   
Sbjct: 274 DVNLMCPQCICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAAMRGRKLTE--- 330

Query: 144 QAVSGTPGRVLDMIKK-QMLQTRNVQMLVLDEADELLSETLGFKQ---QIYDIFAKLPKN 199
           Q V GTPG   D ++K + +    ++ LVLDEAD ++    GF      IY++      +
Sbjct: 331 QIVIGTPGITRDYLQKYKCIDPSKIRCLVLDEADVMIYHQ-GFTDISTTIYNMVEDASDS 389

Query: 200 CQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDI 259
            Q ++ SAT ++ ++    K + + + +++KR+E +L  IKQ+ V     + K+  + ++
Sbjct: 390 VQSMLFSATYDEPVINFATKIIKNAIVVMLKREEQALPNIKQFYVQCACRDSKYAAIVNL 449

Query: 260 YDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVL 319
           Y  L +   VIFC+TK  V WL + +      V  +HGDM   ER   +  F+ G  +VL
Sbjct: 450 YSGLAVASSVIFCHTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIHFKRGDFKVL 509

Query: 320 ISTDVWARGIDVQQVSLVINYDLP-----------------EIIENYIHRIGRSGRFGRK 362
           I+T+V+ARGIDV QVS+VINYDLP                    E Y+HRIGR+GRFG+ 
Sbjct: 510 ITTNVFARGIDVAQVSVVINYDLPIKYTDEGTPMVVDGFTQPDCETYLHRIGRTGRFGKT 569

Query: 363 GVAINFITKAD-LAKLREIEKFYSIKINPM-PANFAEL 398
           G+AIN I   D +  +  +E  + +KI  M P+N  EL
Sbjct: 570 GIAINLIDSEDSMNMINVLENHFQMKIARMDPSNLVEL 607


>gi|3879545|emb|CAA90408| (Z50071) similar to ATP-dependent
           helicase; cDNA EST EMBL:D37707 comes from this gene;
           cDNA EST EMBL:D35867 comes from this gene; cDNA EST
           EMBL:D37271 comes from this gene; cDNA EST EMBL:D70447
           comes from this gene; cDNA EST EM...
           Length = 1022
           
 Score =  224 bits (564), Expect = 1e-57
 Identities = 142/398 (35%), Positives = 223/398 (55%), Gaps = 31/398 (7%)

Query: 28  MNLKDDLLRGIYSYGFEAPSSIQSRAITQIISG--KDVIAQAQSGTGKTATFTIGLLQAI 85
           + LK ++L+ + +  F+ P+ IQ  A+  ++     ++IAQAQSGTGKTA F + +L  I
Sbjct: 623 LRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLTMLCRI 682

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYM-NVNA-FAITGGKTLKDDLKKMQKHGC 143
           D+     Q + L+PT ELA QIG+VV+ +G ++ N+   +AI GG       +K+ +   
Sbjct: 683 DVNLMCPQCICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAAMRGRKLTE--- 739

Query: 144 QAVSGTPGRVLDMIKK-QMLQTRNVQMLVLDEADELLSETLGFKQ---QIYDIFAKLPKN 199
           Q V GTPG   D ++K + +    ++ LVLDEAD ++    GF      IY++      +
Sbjct: 740 QIVIGTPGITRDYLQKYKCIDPSKIRCLVLDEADVMIYHQ-GFTDISTTIYNMVEDASDS 798

Query: 200 CQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDI 259
            Q ++ SAT ++ ++    K + + + +++KR+E +L  IKQ+ V     + K+  + ++
Sbjct: 799 VQSMLFSATYDEPVINFATKIIKNAIVVMLKREEQALPNIKQFYVQCACRDSKYAAIVNL 858

Query: 260 YDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVL 319
           Y  L +   VIFC+TK  V WL + +      V  +HGDM   ER   +  F+ G  +VL
Sbjct: 859 YSGLAVASSVIFCHTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIHFKRGDFKVL 918

Query: 320 ISTDVWARGIDVQQVSLVINYDLP-----------------EIIENYIHRIGRSGRFGRK 362
           I+T+V+ARGIDV QVS+VINYDLP                    E Y+HRIGR+GRFG+ 
Sbjct: 919 ITTNVFARGIDVAQVSVVINYDLPIKYTDEGTPMVVDGFTQPDCETYLHRIGRTGRFGKT 978

Query: 363 GVAINFITKAD-LAKLREIEKFYSIKINPM-PANFAEL 398
           G+AIN I   D +  +  +E  + +KI  M P+N  EL
Sbjct: 979 GIAINLIDSEDSMNMINVLENHFQMKIARMDPSNLVEL 1016


>gi|3323078 (AE001248) ATP-dependent RNA helicase [Treponema
           pallidum]
           Length = 649
           
 Score =  215 bits (543), Expect = 3e-55
 Identities = 118/358 (32%), Positives = 213/358 (58%), Gaps = 5/358 (1%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGK-DVIAQAQSGTGKTATFTIGLLQA 84
           E + L +  L  +   GF  P+ IQ+ AI ++++G  ++IA+A++GTGKTA F + L+Q 
Sbjct: 49  EELGLNEQSLAAVRLKGFRCPTPIQAAAIPRLLAGDANIIAKARTGTGKTAAFGLPLIQE 108

Query: 85  IDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQ 144
           +    +   AL+L PTRELA+Q+   + +L          + GG ++ + L+ +++ G +
Sbjct: 109 LGSPCEHPGALVLVPTRELAAQVASELSSLRIQKIPRIHTVYGGVSIAEQLRNLEQGG-E 167

Query: 145 AVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVV 204
            + GT GRV+D I++  L+   ++  +LDEADE+L+  +GF + I  IF+   K+ +V++
Sbjct: 168 IIVGTTGRVIDHIERGSLELSYLRYFILDEADEMLN--MGFVEDIESIFSHANKDARVLM 225

Query: 205 VSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLT 264
            SATM + IL +   FM     +     E +   I+Q++  V ++  K + L  + D   
Sbjct: 226 FSATMPRQILSIASTFMGSYEVVEEVTPEEARPLIEQFMWVV-RDADKIEALVRLIDVSD 284

Query: 265 ITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDV 324
               ++FC TK   D +++ L + ++ V ++HGD+ Q +R+K++  FRT  +R+L++TDV
Sbjct: 285 NFYGLVFCQTKADADTVAKSLDERHYHVAALHGDIPQSQREKILERFRTKRARILVATDV 344

Query: 325 WARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEK 382
            ARGID++ ++ V+NY +P     Y HR+GR+GR G +G+AI+F+   +  ++  + K
Sbjct: 345 AARGIDIEGITHVVNYSIPHDSATYTHRVGRTGRAGSQGIAISFVRPHETRRMEYLSK 402


>gi|4104820 (AF040045) DEAD box RNA helicase homolog [Anabaena
           variabilis]
           Length = 425
           
 Score =  215 bits (541), Expect = 5e-55
 Identities = 119/362 (32%), Positives = 211/362 (57%), Gaps = 11/362 (3%)

Query: 28  MNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQ---A 84
           + L ++++  +   G+  P+ IQ ++I  ++SG+D++  AQ+GTGKTA+FT+ LL     
Sbjct: 6   LGLSNEIINAVTELGYTKPTPIQMQSIPAVLSGRDLLRGAQTGTGKTASFTLPLLHYYPK 65

Query: 85  IDLRKKD----LQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQK 140
           I L+       ++ALIL+PTRELA+Q+   V++ G Y+ +N+  + GG ++    +++ K
Sbjct: 66  IVLKALQCFLTIRALILTPTRELAAQVESSVRDYGKYLKLNSMVMFGGVSINPQKQRL-K 124

Query: 141 HGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNC 200
                +  TPGR+LD +++  +    +++LVLDEAD +L   +GF + I  I + LPK  
Sbjct: 125 GRVDILVATPGRLLDHVQQGTVNLSQIEILVLDEADRMLD--MGFIRDIRRILSLLPKQR 182

Query: 201 QVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIY 260
           Q ++  AT +  I E+    +N P  I V R  ++ + + Q V  ++++  K D L  + 
Sbjct: 183 QNLLFFATFSDKIKELAAGLLNRPQMIEVARRNVTADTVTQKVYKIERDR-KRDLLAHLI 241

Query: 261 DSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLI 320
                 Q ++F  TK   D L ++L       +++HG+  Q  R   +  F+ G  +VL+
Sbjct: 242 RKDNWYQVLVFTRTKYGADRLVKQLGHERIQALAIHGNKSQSARTHALAKFKNGSLQVLV 301

Query: 321 STDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREI 380
           +TD+ ARG+D+ ++  V+N+DLP + E+Y+HRIGR+GR G  G A++ ++  +   L +I
Sbjct: 302 ATDIAARGLDISELPYVVNFDLPYVPEDYVHRIGRTGRAGASGEAVSLVSADEYHLLADI 361

Query: 381 EK 382
           EK
Sbjct: 362 EK 363


>gi|3288677|gnl|PID|d1032186 (D89592) rhlE [Vibrio alginolyticus]
           Length = 411
           
 Score =  213 bits (536), Expect = 2e-54
 Identities = 123/358 (34%), Positives = 203/358 (56%), Gaps = 8/358 (2%)

Query: 28  MNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDL 87
           + L   +   + + G+E P+SIQ +AI  ++ G ++IA AQ+GTGKTA+F + +L+ +  
Sbjct: 6   LGLSASITDAVKALGYEKPTSIQQKAIPIVLRGSNLIAAAQTGTGKTASFVLPILEKLSQ 65

Query: 88  ----RKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGC 143
               RKK  +A+IL+PTRELA Q+ Q ++  G  + + + A+ GG       K+    G 
Sbjct: 66  GETQRKKRARAIILTPTRELALQVHQSIEAYGKNLPLRSMAMFGGVEYAPQ-KQALIEGV 124

Query: 144 QAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVV 203
             V  TPGR++D+  ++ +    V+MLVLDEAD++L   +GF   I  I   +P++ Q +
Sbjct: 125 DIVVSTPGRLIDLYGQRAIHFDEVEMLVLDEADKMLD--MGFIDSIDKIIDCMPEDVQSL 182

Query: 204 VVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSL 263
           + SAT++  + ++ +  + DP +I + +   S   IKQ++  VDK+  K   L  + +  
Sbjct: 183 LFSATLSNPVRDLAKNAIVDPEEITIAKHSASKSNIKQWITTVDKD-MKSSLLSHMLNEN 241

Query: 264 TITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTD 323
             +Q +IF  TK     L  +L +      + H    Q  R +++  F+ G  + L++T 
Sbjct: 242 DWSQVLIFIETKHGAAKLVSQLEKRGIVAEAFHSGRNQRVRQELIEKFKAGEIQYLVATG 301

Query: 324 VWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIE 381
           V ARGID+  + +VINYDLP   + Y+HRIGR+GR G +G AI+ ++K D   L  IE
Sbjct: 302 VAARGIDIDNLPVVINYDLPFPADEYVHRIGRTGRAGAQGEAISLVSKDDFKNLCMIE 359


>gi|1707017 (U78721) RNA helicase isolog [Arabidopsis thaliana]
           Length = 733
           
 Score =  210 bits (528), Expect = 2e-53
 Identities = 127/396 (32%), Positives = 212/396 (53%), Gaps = 35/396 (8%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           E   L  +LL+ +   G++ PS IQ  AI   +  +DVI  A++G+GKTA F + +L  I
Sbjct: 316 EESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAYI 375

Query: 86  --------DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKK 137
                   +   +   A++++PTRELA QI +       Y+     +I GG+++++   K
Sbjct: 376 SRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLK 435

Query: 138 MQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLP 197
           + + GC+ V  TPGR++D ++++         +VLDEAD ++   +GF+ Q+  +   +P
Sbjct: 436 ITQ-GCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMID--MGFEPQVAGVLDAMP 492

Query: 198 KNC-----------------QVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIK 240
            +                     + SATM   +  + RK++ +PV + +     + + I 
Sbjct: 493 SSNLKPENEEEELDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGTAGKTTDLIS 552

Query: 241 QYVVNVDKEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMK 300
           Q+V+ + KE  KF  L  + D L     ++F NTKK  D +++ L ++ + V ++HG   
Sbjct: 553 QHVIMM-KESEKFFRLQKLLDELGEKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKS 611

Query: 301 QEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFG 360
           QE+R+  +  FR     VL++TDV  RGID+  V+ VINYD+P+ IE Y HRIGR+GR G
Sbjct: 612 QEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAG 671

Query: 361 RKGVAINFITKADLAKLREIEKFYSIKINPMPANFA 396
           + GVA +F+T      L + E FY +K   + +N A
Sbjct: 672 KSGVATSFLT------LHDTEVFYDLKQMLVQSNSA 701


>gi|118283|sp|P24782|DBP2_SCHPO P68-LIKE PROTEIN
           >gi|82829|pir||S14048 RNA helicase dbp2 - fission yeast
           (Schizosaccharomyces pombe) >gi|5270|emb|CAA36873|
           (X52648) p68 protein [Schizosaccharomyces pombe]
           Length = 550
           
 Score =  208 bits (523), Expect = 7e-53
 Identities = 127/368 (34%), Positives = 203/368 (54%), Gaps = 11/368 (2%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           E     + +L+ +   GFEAP+ IQ +A    +SG+D++  + +G+GKT ++ +  +  I
Sbjct: 125 EEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHI 184

Query: 86  DLRK-----KDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQK 140
           + +           L+L+PTRELA QI Q     G    +    + GG  L   +  + +
Sbjct: 185 NAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPLGPQILDLIR 244

Query: 141 HGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNC 200
            G +    TPGR+LDM+       R V  LVLDEAD +L   +GF+ QI  I  ++  + 
Sbjct: 245 -GVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLD--MGFEPQIRKIVDQIRPDR 301

Query: 201 QVVVVSATMNKDILEVTRKFMNDPVKILV-KRDEISLEGIKQYVVNVDKEEWKFDTLCDI 259
           Q V+ SAT  K++  + R ++ND +++ V   D  +   IKQ V  VD  + +     DI
Sbjct: 302 QTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDI 361

Query: 260 YDSLTI--TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSR 317
            + L     + +IF  TK+  D +++ L Q  +  +++HGD  Q+ERD V+N+FRTG S 
Sbjct: 362 EEVLKDRDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSP 421

Query: 318 VLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKL 377
           ++++TDV +RGIDV+ ++ V NYD P   E+Y+HRIGR+GR G KG A  + T  +  + 
Sbjct: 422 IMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQA 481

Query: 378 REIEKFYS 385
           RE+    S
Sbjct: 482 RELVSILS 489


>gi|133134|sp|P19109|RM62_DROME PUTATIVE ATP-DEPENDENT RNA HELICASE
           P62 >gi|103357|pir||S11485 RNA helicase - fruit fly
           (Drosophila melanogaster) >gi|8444|emb|CAA37037|
           (X52846) RNA helicase [Drosophila melanogaster]
           Length = 575
           
 Score =  207 bits (521), Expect = 1e-52
 Identities = 136/386 (35%), Positives = 219/386 (56%), Gaps = 18/386 (4%)

Query: 28  MNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDL 87
           ++L D +++ I   G++AP++IQ++     +SG + +  A++G+GKT  + +  +  I+ 
Sbjct: 142 VHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVHIN- 200

Query: 88  RKKDLQ------ALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKH 141
            ++ LQ      AL+L+PTRELA QI QV    G    V    + GG      ++ +Q+ 
Sbjct: 201 NQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQR- 259

Query: 142 GCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQ 201
           GC+ V  TPGR++D +       +    LVLDEAD +L   +GF+ QI  I +++  + Q
Sbjct: 260 GCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLD--MGFEPQIRKIVSQIRPDRQ 317

Query: 202 VVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNV----DKEEWKFDTLC 257
            ++ SAT  K++ ++   F+ + ++I +   E+S     + VV+V     KEE     L 
Sbjct: 318 TLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLS 377

Query: 258 DIYD-SLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHS 316
           DIYD S +  + +IF  TK++VD L + +        ++HGD  Q ERD V+ +FR+G S
Sbjct: 378 DIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKS 437

Query: 317 RVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITK--ADL 374
            +L++TDV ARG+DV  +  VIN+D P+  E+YIHRIGR+GR   KG +  F TK  A  
Sbjct: 438 NILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQ 497

Query: 375 AK-LREIEKFYSIKINPMPANFAELS 399
           AK L ++ +  + +INP   N A  S
Sbjct: 498 AKALVDVLREANQEINPALENLARNS 523


>gi|173419 (L11574) p68 RNA helicase [Schizosaccharomyces pombe]
           >gi|3810840|emb|CAA21801| (AL032684) p68-like protein.
           [Schizosaccharomyces pombe]
           Length = 550
           
 Score =  207 bits (521), Expect = 1e-52
 Identities = 126/368 (34%), Positives = 203/368 (54%), Gaps = 11/368 (2%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           E     + +L+ +   GFEAP+ IQ +A    +SG+D++  + +G+GKT ++ +  +  I
Sbjct: 125 EEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHI 184

Query: 86  DLRK-----KDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQK 140
           + +           L+L+PTRELA QI Q     G    +    + GG      ++ + +
Sbjct: 185 NAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIR 244

Query: 141 HGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNC 200
            G +    TPGR+LDM+       R V  LVLDEAD +L   +GF+ QI  I  ++  + 
Sbjct: 245 -GVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLD--MGFEPQIRKIVDQIRPDR 301

Query: 201 QVVVVSATMNKDILEVTRKFMNDPVKILV-KRDEISLEGIKQYVVNVDKEEWKFDTLCDI 259
           Q V+ SAT  K++  + R ++ND +++ V   D  +   IKQ V  VD  + +     DI
Sbjct: 302 QTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDI 361

Query: 260 YDSLTI--TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSR 317
            + L     + +IF  TK+  D +++ L Q  +  +++HGD  Q+ERD V+N+FRTG S 
Sbjct: 362 EEVLKDRDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSP 421

Query: 318 VLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKL 377
           ++++TDV +RGIDV+ ++ V NYD P   E+Y+HRIGR+GR G KG A  + T  +  + 
Sbjct: 422 IMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQA 481

Query: 378 REIEKFYS 385
           RE+    S
Sbjct: 482 RELVSILS 489


>gi|416881|sp|P21693|DBPA_ECOLI ATP-DEPENDENT RNA HELICASE DBPA
           >gi|1742212|gnl|PID|d1015662 (D90773) ATP-dependent RNA
           helicase DbpA. [Escherichia coli] >gi|1787605 (AE000232)
           ATP-dependent RNA helicase [Escherichia coli]
           Length = 457
           
 Score =  206 bits (519), Expect = 2e-52
 Identities = 123/363 (33%), Positives = 198/363 (53%), Gaps = 8/363 (2%)

Query: 35  LRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQA 94
           L  +   G+   + +Q+ A+  I++GKDV  QA++G+GKTA F +GLLQ ID      QA
Sbjct: 15  LTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQA 74

Query: 95  LILSPTRELASQIGQVVKNLGDYM-NVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRV 153
           L+L PTRELA Q+   ++ L  ++ N     + GG+        +Q H    +  TPGR+
Sbjct: 75  LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHIIVATPGRL 133

Query: 154 LDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSATMNKDI 213
           LD ++K  +    +  LV+DEAD +L   +GF   I D+    P + Q ++ SAT  + I
Sbjct: 134 LDHLQKGTVSLDALNTLVMDEADRMLD--MGFSDAIDDVIRFAPASRQTLLFSATWPEAI 191

Query: 214 LEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQCVIFCN 273
             ++ +   DP+ I +   + +L  I+Q       +  K   L  +      + CV+FCN
Sbjct: 192 AAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKG-KIPLLQRLLSLHQPSSCVVFCN 249

Query: 274 TKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQ 333
           TKK    +   L +   + +S+HGD++Q +RD+ +  F  G +RVL++TDV ARG+D++ 
Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309

Query: 334 VSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYSIKIN--PM 391
           + LV+N++L    E ++HRIGR+ R G  G+AI+F    +  +   I     IK+N    
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTP 369

Query: 392 PAN 394
           PAN
Sbjct: 370 PAN 372


>gi|3149952|gnl|PID|d1029287 (AB010259) DRH1 [Arabidopsis thaliana]
           Length = 619
           
 Score =  206 bits (519), Expect = 2e-52
 Identities = 124/380 (32%), Positives = 208/380 (54%), Gaps = 10/380 (2%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTI-GLLQA 84
           E+     +LLR + S GF AP+ IQ+++    + G+D++A A++G+GKT  + I G L  
Sbjct: 161 EATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHL 220

Query: 85  IDLRKKDLQA---LILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKH 141
             +R         L+LSPTRELA+QI +     G    ++   + GG      L+ +++ 
Sbjct: 221 QRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLER- 279

Query: 142 GCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQ 201
           G   V  TPGR+ D+++ + +  R +  LVLDEAD +L   +GF+ QI  I  ++P   Q
Sbjct: 280 GADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLD--MGFEPQIRKIVKEIPTKRQ 337

Query: 202 VVVVSATMNKDILEVTRKFMNDPVKILVKR-DE-ISLEGIKQYVVNVDKEEWKFDTLCDI 259
            ++ +AT  K + ++    + +P ++ +   DE ++ + I Q++  V   E +      +
Sbjct: 338 TLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQIL 397

Query: 260 YDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVL 319
                 ++ +IFC+TK+  D L++ L +  F   ++HGD  Q ERD V+N FR+G + VL
Sbjct: 398 RSQEPGSKVIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRTPVL 456

Query: 320 ISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLRE 379
           ++TDV ARG+DV+ +  V+NYD P  +E+Y+HRIGR+GR G  G A  F    D     +
Sbjct: 457 VATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASD 516

Query: 380 IEKFYSIKINPMPANFAELS 399
           + K        +P    E++
Sbjct: 517 LIKILEGANQRVPPQIREMA 536


>gi|1749748|gnl|PID|d1014628 (D89270) similar to Saccharomyces
           cerevisiae eukaryotic initiation factor 4A (EIF-4),
           SWISS-PROT Accession Number P10081 [Schizosaccharomyces
           pombe]
           Length = 339
           
 Score =  206 bits (518), Expect = 3e-52
 Identities = 116/330 (35%), Positives = 200/330 (60%), Gaps = 7/330 (2%)

Query: 68  QSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYM-NVNAFAIT 126
           +SG GKTA F +  LQ I+    ++  L+L  TRELA QI         Y+ +V      
Sbjct: 1   KSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFY 60

Query: 127 GGKTLKDDLK--KMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLG 184
           GG  +K D++  K +      V  TPGR+  +++++ L+  +V+  VLDE D+LL E++ 
Sbjct: 61  GGINIKQDMEAFKDKSKSPHIVVATPGRLNALVREKNLKVNSVKHFVLDECDKLL-ESVD 119

Query: 185 FKQQIYDIFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKILVKRD-EISLEGIKQYV 243
            ++ I ++F   P   QV++ SAT++ +I  + +KFM +P++I V  + +++L G++Q+ 
Sbjct: 120 MRRDIQEVFRATPPQKQVMMFSATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHY 179

Query: 244 VNVDKEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEE 303
           V ++ E+ K   + D+ DSL   Q VIF  +  + + L + L + NF  + +HG + QEE
Sbjct: 180 VKLE-EKAKNRKINDLLDSLEFNQVVIFVKSVSRANELDRLLRECNFPSICIHGGLPQEE 238

Query: 304 RDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKG 363
           R K    F+    R+ ++TDV+ RGID+++V++VINYD+P+  ++Y+HR+GR+GRFG KG
Sbjct: 239 RIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKG 298

Query: 364 VAINF-ITKADLAKLREIEKFYSIKINPMP 392
           +AI F  ++ D   L +I++ + + I  +P
Sbjct: 299 LAITFSSSEEDSQILDKIQERFEVNITELP 328


>gi|1174440|sp|P44701|SRMB_HAEIN ATP-DEPENDENT RNA HELICASE SRMB
           HOMOLOG >gi|1073894|pir||H64066 ATP-dependent RNA
           helicase (srmB) homolog - Haemophilus influenzae (strain
           Rd KW20) >gi|1573394 (U32725) ATP-dependent RNA helicase
           (srmB) [Haemophilus influenzae Rd]
           Length = 439
           
 Score =  205 bits (515), Expect = 6e-52
 Identities = 121/369 (32%), Positives = 200/369 (53%), Gaps = 20/369 (5%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQ-A 84
           E  +L  +LL+ +   G+  P++IQ  AI   +   DV+  A +GTGKTA F +  LQ  
Sbjct: 7   EQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEESDVLGSAPTGTGKTAAFLLPALQHL 66

Query: 85  IDLRKKDL---QALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKH 141
           +D  ++     + L+L+PTRELA Q+ +  + L  + ++N   ITGG          Q H
Sbjct: 67  LDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAY-------QNH 119

Query: 142 GC------QAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAK 195
           G         V  TPGR+L  IK++    R+V+ML+ DEAD +L   +GF Q    I A+
Sbjct: 120 GDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQ--MGFGQDAEKIAAE 177

Query: 196 LPKNCQVVVVSATMNKDIL-EVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFD 254
                Q ++ SAT+  ++L +   + +NDPVK+  +      + I Q+  + D  E K  
Sbjct: 178 TRWRKQTLLFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHADSNEHKIK 237

Query: 255 TLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTG 314
            L    ++  +T+ ++F   ++    LS+ L +       + G+M Q +R+  ++  ++G
Sbjct: 238 LLARFIETEEVTRGIVFIRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSG 297

Query: 315 HSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADL 374
              VL++TDV ARGID+  VS V+N+DLP   + Y+HRIGR+ R G+KG A++F+   D 
Sbjct: 298 IVTVLVATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDY 357

Query: 375 AKLREIEKF 383
             L +I+++
Sbjct: 358 KLLGKIKRY 366


>gi|95749|pir||S12698 probable RNA helicase - Escherichia coli
           >gi|41248|emb|CAA36872| (X52647) DEAD box protein (AA
           1-432) [Escherichia coli]
           Length = 432
           
 Score =  204 bits (513), Expect = 1e-51
 Identities = 121/349 (34%), Positives = 193/349 (54%), Gaps = 8/349 (2%)

Query: 49  IQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIG 108
           +Q+ A+  I++GKDV  QA++G+GKTA F +GLLQ ID      QAL+L PTRELA Q+ 
Sbjct: 4   VQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVA 63

Query: 109 QVVKNLGDYM-NVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRNV 167
             ++ L  ++ N     + GG+        +Q H    +  TPGR+LD ++K  +    +
Sbjct: 64  GELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHIIVATPGRLLDHLQKGTVSLDAL 122

Query: 168 QMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKI 227
             LV+DEAD +L   +GF   I D+    P + Q ++ SAT  + I  ++ +   DP+ I
Sbjct: 123 NTLVMDEADRMLD--MGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAI 180

Query: 228 LVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQ 287
            +   + +L  I+Q       +  K   L  +      + CV+FCNTKK    +   L +
Sbjct: 181 EIDSTD-ALPPIEQQFYETSSKG-KIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNE 238

Query: 288 SNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIE 347
              + +S+HGD++Q +RD+ +  F  G +RVL++TDV ARG+D++ + LV+N++L    E
Sbjct: 239 VGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPE 298

Query: 348 NYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYSIKIN--PMPAN 394
            ++HRIGR+ R G  G+AI+F    +  +   I     IK+N    PAN
Sbjct: 299 VHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPAN 347


>gi|1169228|sp|P46942|DB10_NICSY RNA HELICASE-LIKE PROTEIN DB10
           >gi|1084413|pir||S42639 helicase-like protein - Wood
           tobacco >gi|563986|gnl|PID|d1004279 (D16247) RNA
           helicase like protein DB10 [Nicotiana sylvestris]
           Length = 607
           
 Score =  204 bits (513), Expect = 1e-51
 Identities = 121/354 (34%), Positives = 203/354 (57%), Gaps = 10/354 (2%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           E+     +++R ++  GF AP+ IQ+++    + G+D++A A++G+GKT  + +     +
Sbjct: 148 EATGFPSEIVREMHQAGFSAPTPIQAQSWPIALQGRDIVAIAKTGSGKTLGYLMPAFIHL 207

Query: 86  DLRKKDLQA----LILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKH 141
             R+K+ Q     L+LSPTRELA+QI       G    ++   + GG      L+++ + 
Sbjct: 208 QQRRKNPQLGPTILVLSPTRELATQIQAEAVKFGKSSRISCTCLYGGAPKGPQLRELSR- 266

Query: 142 GCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQ 201
           G   V  TPGR+ D+++ + +    V  LVLDEAD +L   +GF+ QI  I  ++P   Q
Sbjct: 267 GVDIVVATPGRLNDILEMRRVSLGQVSYLVLDEADRMLD--MGFEPQIRKIVKEVPVQRQ 324

Query: 202 VVVVSATMNKDILEVTRKFMNDPVKILVKR-DE-ISLEGIKQYVVNVDKEEWKFDTLCDI 259
            ++ +AT  K + ++    + + V++ +   DE ++ + I Q++  V   E +      +
Sbjct: 325 TLMYTATWPKGVRKIAADLLVNSVQVNIGNVDELVANKSITQHIEVVLPMEKQRRVEQIL 384

Query: 260 YDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVL 319
                 ++ +IFC+TKK  D LS+ L + NF   ++HGD  Q ERD V++ FR G S VL
Sbjct: 385 RSKEPGSKIIIFCSTKKMCDQLSRNLTR-NFGAAAIHGDKSQGERDYVLSQFRAGRSPVL 443

Query: 320 ISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKAD 373
           ++TDV ARG+D++ + +VINYD P  IE+Y+HRIGR+GR G  G+A  F +  D
Sbjct: 444 VATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGASGLAYTFFSDQD 497


>gi|2275211 (AC002337) RNA helicase isolog [Arabidopsis thaliana]
           Length = 748
           
 Score =  203 bits (511), Expect = 2e-51
 Identities = 121/360 (33%), Positives = 205/360 (56%), Gaps = 20/360 (5%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           E       ++  I    +E P++IQ +A+  ++SG+DVI  A++G+GKTA F + ++  I
Sbjct: 231 EDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHI 290

Query: 86  DLRKKDLQ------ALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQ 139
            + + +LQ       +I +PTRELA QI    K       +   A+ GG +  +  K++ 
Sbjct: 291 -MDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKEL- 348

Query: 140 KHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKN 199
           K GC+ V  TPGR++DM+K + L       LVLDEAD +    LGF+ Q+  I  ++  +
Sbjct: 349 KAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFD--LGFEPQVRSIVGQIRPD 406

Query: 200 CQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNV-----DKEEWKFD 254
            Q ++ SATM   + ++ R+ ++DP+++ V    ++ E I Q VVNV     +K  W  +
Sbjct: 407 RQTLLFSATMPWKVEKLAREILSDPIRVTVGEVGMANEDITQ-VVNVIPSDAEKLPWLLE 465

Query: 255 TLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTG 314
            L  + D   +   ++F + K  VD +  +L  ++F V ++HGD  Q  R + +  F++G
Sbjct: 466 KLPGMIDEGDV---LVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSG 522

Query: 315 HSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFG-RKGVAINFITKAD 373
              VLI+TDV ARG+D++ +  V+NYD+ + ++ ++HRIGR+GR G R GVA   +T+ +
Sbjct: 523 VHHVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQRE 582


>gi|1363325|pir||A57514 RNA helicase HEL117 - rat >gi|897915
           (U25746) RNA helicase [Rattus norvegicus]
           Length = 1032
           
 Score =  202 bits (508), Expect = 4e-51
 Identities = 115/375 (30%), Positives = 216/375 (56%), Gaps = 15/375 (4%)

Query: 34  LLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQ 93
           +L  +  +G+E P+ IQ++AI  I+SG+D+I  A++G+GKT  F + + + I + ++ L+
Sbjct: 383 ILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHI-MDQRSLE 441

Query: 94  ------ALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVS 147
                 A+I++PTRELA QI +  K     + +    + GG  + + + ++ K G + + 
Sbjct: 442 EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAEL-KRGAEIIV 500

Query: 148 GTPGRVLDMIKK---QMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVV 204
            TPGR++DM+     ++   R V  +VLDEAD +    +GF+ Q+  I   +  + Q V+
Sbjct: 501 CTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFD--MGFEPQVMRIVDNVRPDRQTVM 558

Query: 205 VSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLT 264
            SAT  + +  + R+ ++ P+++ V    +    ++Q V+ +++E+ KF  L ++     
Sbjct: 559 FSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEK-KFLKLLELLGHYQ 617

Query: 265 IT-QCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTD 323
            +   +IF + ++  D L + L+++++  +S+HG + Q +RD ++NDF+ G  ++L++T 
Sbjct: 618 ESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATS 677

Query: 324 VWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKF 383
           V ARG+DV+ + LV+NY  P   E+Y+HR GR+GR G KG A  FIT+       +I K 
Sbjct: 678 VAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKA 737

Query: 384 YSIKINPMPANFAEL 398
             +    +P +  +L
Sbjct: 738 LELSGTAVPPDLEKL 752


>gi|3882323|gnl|PID|d1035502 (AB018344) KIAA0801 protein [Homo
           sapiens]
           Length = 1032
           
 Score =  202 bits (508), Expect = 4e-51
 Identities = 115/375 (30%), Positives = 216/375 (56%), Gaps = 15/375 (4%)

Query: 34  LLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQ 93
           +L  +  +G+E P+ IQ++AI  I+SG+D+I  A++G+GKT  F + + + I + ++ L+
Sbjct: 383 ILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHI-MDQRSLE 441

Query: 94  ------ALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVS 147
                 A+I++PTRELA QI +  K     + +    + GG  + + + ++ K G + + 
Sbjct: 442 EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAEL-KRGAEIIV 500

Query: 148 GTPGRVLDMIKK---QMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVV 204
            TPGR++DM+     ++   R V  +VLDEAD +    +GF+ Q+  I   +  + Q V+
Sbjct: 501 CTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFD--MGFEPQVMRIVDNVRPDRQTVM 558

Query: 205 VSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLT 264
            SAT  + +  + R+ ++ P+++ V    +    ++Q V+ +++E+ KF  L ++     
Sbjct: 559 FSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEK-KFLKLLELLGHYQ 617

Query: 265 IT-QCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTD 323
            +   +IF + ++  D L + L+++++  +S+HG + Q +RD ++NDF+ G  ++L++T 
Sbjct: 618 ESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATS 677

Query: 324 VWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKF 383
           V ARG+DV+ + LV+NY  P   E+Y+HR GR+GR G KG A  FIT+       +I K 
Sbjct: 678 VAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKA 737

Query: 384 YSIKINPMPANFAEL 398
             +    +P +  +L
Sbjct: 738 LELSGTAVPPDLEKL 752


>gi|1731006|sp|P54475|YQFR_BACSU PROBABLE RNA HELICASE IN CCCA-SODA
           INTERGENIC REGION >gi|1303839|gnl|PID|d1013174 (D84432)
           YqfR [Bacillus subtilis] >gi|2634947|emb|CAB14444|
           (Z99116) similar to ATP-dependent RNA helicase [Bacillus
           subtilis]
           Length = 438
           
 Score =  198 bits (499), Expect = 4e-50
 Identities = 123/362 (33%), Positives = 192/362 (52%), Gaps = 11/362 (3%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           E   LK  ++  ++  GF  P+ IQ R I  ++  + VI Q+Q+GTGKT  + + LL  I
Sbjct: 7   ELYELKPFIIDAVHRLGFYEPTDIQKRLIPAVLKKESVIGQSQTGTGKTHAYLLPLLNKI 66

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNL-----GDYMNVNAFAITGGKTLKDDLKKMQK 140
           D  K  +Q +I +PTRELA+QI Q    +     G  +    F     K    D  K+Q 
Sbjct: 67  DPAKDVVQVVITAPTRELANQIYQEALKITQGEEGSQIRSKCFIGGTDKQKSIDKLKIQP 126

Query: 141 HGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNC 200
           H    V GTPGR+ D+IK+Q L     + LV+DEAD +L   +GF   +  I +++P++ 
Sbjct: 127 H---LVVGTPGRIADLIKEQALSVHKAESLVIDEADLMLD--MGFLADVDYIGSRMPEDL 181

Query: 201 QVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIY 260
           Q++V SAT+ + +    +K+M +P    V+  +++   I ++++   K   K   L DI 
Sbjct: 182 QMLVFSATIPEKLKPFLKKYMENPKYAHVEPKQVTAAKI-EHILIPSKHRDKDKLLFDIM 240

Query: 261 DSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLI 320
             L     ++F NTK   D ++Q L      +  +HG +   ER KVM          +I
Sbjct: 241 SHLNPYLGIVFANTKNTADHIAQYLTGKGMKIGLLHGGLTPRERKKVMKQINDLEFTYII 300

Query: 321 STDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREI 380
           +TD+ ARGID++ VS VINY+LP+ ++ Y+HR+GR+ R G  G A+      D   L  +
Sbjct: 301 ATDLAARGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGSSGQAMTIYELTDEDALVRL 360

Query: 381 EK 382
           EK
Sbjct: 361 EK 362


>gi|2463519|dbj||AB005147_1 (AB005147) vas [Danio rerio]
           Length = 716
           
 Score =  198 bits (498), Expect = 6e-50
 Identities = 127/400 (31%), Positives = 215/400 (53%), Gaps = 19/400 (4%)

Query: 1   MSFDREEDQXXXXXXXXXXXXXXXXESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISG 60
           ++FD+ +D                 E   L D L + +   G+  P+ +Q   I  I +G
Sbjct: 255 INFDKYDDILVDVSGSNPPKAIMTFEEAGLCDSLSKNVSKSGYVKPTPVQKHGIPIISAG 314

Query: 61  KDVIAQAQSGTGKTATFTIGLLQ-----AIDLRK----KDLQALILSPTRELASQIGQVV 111
           +D++A AQ+G+GKTA F + +LQ      +   K    ++ +A+I++PTREL +QI    
Sbjct: 315 RDLMACAQTGSGKTAAFLLPILQRFMTDGVAASKFSEIQEPEAIIVAPTRELINQIYLEA 374

Query: 112 KNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLV 171
           +       V    + GG      ++++ K GC  +  TPGR+ D+I +  +    V+ LV
Sbjct: 375 RKFAYGTCVRPVVVYGGINTGYTIREVLK-GCNVLCATPGRLHDLIGRGKIGLSKVRYLV 433

Query: 172 LDEADELLSETLGFKQQIYDIFAK--LP--KNCQVVVVSATMNKDILEVTRKFMN-DPVK 226
           LDEAD +L   +GF+ ++  + A   +P  +  Q ++ SAT  +DI  +   F+  D + 
Sbjct: 434 LDEADRMLD--MGFEPEMRKLVASPGMPSKEERQTLMFSATYPEDIQRMAADFLKVDYIF 491

Query: 227 ILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLI 286
           + V     +   ++Q VV VD+   K D L ++  +    + ++F  TK+  D+++  L 
Sbjct: 492 LAVGVVGGACSDVEQTVVQVDQYS-KRDQLLELLRATGNERTMVFVETKRSADFIATFLC 550

Query: 287 QSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEII 346
           Q   +  S+HGD +Q ER+K ++DFR GH  VL++T V ARG+D++QV  V+N+D+P  I
Sbjct: 551 QEKISTTSIHGDREQREREKALSDFRLGHCPVLVATSVAARGLDIEQVQHVVNFDMPSSI 610

Query: 347 ENYIHRIGRSGRFGRKGVAINFIT-KADLAKLREIEKFYS 385
           + Y+HRIGR+GR G  G A++F   ++D    R + K  S
Sbjct: 611 DEYVHRIGRTGRCGNTGRAVSFFNPESDTPLARSLVKVLS 650


>gi|2558535|emb|CAA72735| (Y12007) RNA helicase (DEAD box) [Danio
           rerio]
           Length = 700
           
 Score =  198 bits (497), Expect = 8e-50
 Identities = 126/400 (31%), Positives = 215/400 (53%), Gaps = 19/400 (4%)

Query: 1   MSFDREEDQXXXXXXXXXXXXXXXXESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISG 60
           ++FD+ +D                 E   L D L + +   G+  P+ +Q   I  I +G
Sbjct: 239 INFDKYDDILVDVSGSNPPKAIMTFEEAGLCDSLSKNVSKSGYVKPTPVQKHGIPIISAG 298

Query: 61  KDVIAQAQSGTGKTATFTIGLLQ-----AIDLRK----KDLQALILSPTRELASQIGQVV 111
           +D++A AQ+G+GKTA F + +LQ      +   K    ++ +A+I++PTREL +QI    
Sbjct: 299 RDLMACAQTGSGKTAAFLLPILQRFMTDGVAASKFSEIQEPEAIIVAPTRELINQIYLEA 358

Query: 112 KNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLV 171
           +       V    + GG      ++++ K GC  +  TPGR+ D+I +  +    V+ LV
Sbjct: 359 RKFAYGTCVRPVVVYGGINTGYTIREVLK-GCNVLCATPGRLHDLIGRGKIGLSKVRYLV 417

Query: 172 LDEADELLSETLGFKQQIYDIFAK--LP--KNCQVVVVSATMNKDILEVTRKFMN-DPVK 226
           LDEAD +L   +GF+ ++  + A   +P  +  Q ++ SAT  +DI  +   F+  D + 
Sbjct: 418 LDEADRMLD--MGFEPEMRKLVASPGMPSKEKRQTLMFSATYPEDIQRMAADFLKVDYIF 475

Query: 227 ILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLI 286
           + V     +   ++Q +V VD+   K D L ++  +    + ++F  TK+  D+++  L 
Sbjct: 476 LAVGVVGGACSDVEQTIVQVDQYS-KRDQLLELLRATGNERTMVFVETKRSADFIATFLC 534

Query: 287 QSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEII 346
           Q   +  S+HGD +Q ER+K ++DFR GH  VL++T V ARG+D++QV  V+N+D+P  I
Sbjct: 535 QEKISTTSIHGDREQREREKALSDFRLGHCPVLVATSVAARGLDIEQVQHVVNFDMPSSI 594

Query: 347 ENYIHRIGRSGRFGRKGVAINFIT-KADLAKLREIEKFYS 385
           + Y+HRIGR+GR G  G A++F   ++D    R + K  S
Sbjct: 595 DEYVHRIGRTGRCGNTGRAVSFFNPESDTPLARSLVKVLS 634


>gi|1351656|sp|Q09903|YAJ3_SCHPO PUTATIVE ATP-DEPENDENT RNA HELICASE
           C30D11.03 >gi|2130403|pir||S62561 hypothetical protein
           SPAC30D11.03 - fission yeast (Schizosaccharomyces pombe)
           >gi|1065890|emb|CAA91889| (Z67961) ATP dependent RNA
           helicase [Schizosaccharomyces pombe]
           Length = 754
           
 Score =  197 bits (495), Expect = 1e-49
 Identities = 118/363 (32%), Positives = 196/363 (53%), Gaps = 9/363 (2%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           +SMNL   +L+G+ + GFE P+ IQ + I   + GKD++  A +G+GKTA F + +L+ +
Sbjct: 262 QSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERL 321

Query: 86  DLRKKDL---QALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHG 142
             R K +   + LIL PTRELA Q   V   +  + ++      GG +LK   ++++K  
Sbjct: 322 LYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRP 381

Query: 143 CQAVSGTPGRVLD-MIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQ 201
              V  TPGR +D M   Q     N++++V+DEAD +L +  GF  ++ +I    PK+ Q
Sbjct: 382 -DIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLED--GFADELNEIIQACPKSRQ 438

Query: 202 VVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNV--DKEEWKFDTLCDI 259
            ++ SATM   + ++ R  +N PV++ V   + + + + Q  V V   +E  +   L  +
Sbjct: 439 TMLFSATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKLLTQEFVRVRPQRELLRPAMLIYL 498

Query: 260 YDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVL 319
              L   + +IF  +K     +       +     +HG + QE+R + + DFR G    L
Sbjct: 499 CKELFHRRTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYL 558

Query: 320 ISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLRE 379
           ++TDV +RGID++ + +VINY+ P   E Y+HR+GR+ R GR G AI    + D   L+ 
Sbjct: 559 LATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAITLAGEGDRKVLKG 618

Query: 380 IEK 382
           + K
Sbjct: 619 VFK 621


>gi|3641|emb|CAA39465| (X55993) DBP1 [Saccharomyces cerevisiae]
           Length = 618
           
 Score =  196 bits (494), Expect = 2e-49
 Identities = 127/392 (32%), Positives = 210/392 (53%), Gaps = 29/392 (7%)

Query: 30  LKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLL------- 82
           L + L+  I    F  P+ +Q  +I  +  G+D++A AQ+G+GKT  F   L        
Sbjct: 162 LDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRSG 221

Query: 83  --------QAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDD 134
                   Q+   RK    AL+L+PTRELA+QI +  +       V    + GG  + + 
Sbjct: 222 PSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGAPIGNQ 281

Query: 135 LKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFA 194
           ++++ + GC  +  TPGR+ D++++  +   N++ LVLDEAD +L   +GF+ QI  I  
Sbjct: 282 MREVDR-GCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLD--MGFEPQIRHIVE 338

Query: 195 KLP----KNCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQ---YVVNVD 247
           +      +N Q ++ SAT   DI  + R F+++ + + V R   + E I Q   YV ++D
Sbjct: 339 ECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYVDDMD 398

Query: 248 KEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKV 307
           K+    D L   +  LT+    IF  TK+  D L+  LI  NF   ++HGD  Q ER++ 
Sbjct: 399 KKSALLDLLSAEHKGLTL----IFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERA 454

Query: 308 MNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAIN 367
           ++ F+   + +L++T V ARG+D+  V+ VINYDLP  I++Y+HRIGR+GR G  GVA +
Sbjct: 455 LSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATS 514

Query: 368 FITKADLAKLREIEKFYSIKINPMPANFAELS 399
           F    +   ++ + +  +     +P   ++LS
Sbjct: 515 FFNSNNQNIVKGLMEILNEANQEVPTFLSDLS 546


>gi|1706311|sp|P24784|DBP1_YEAST PROBABLE ATP-DEPENDENT RNA HELICASE
           DBP1 (HELICASE CA1) >gi|2132404|pir||S62003 probable
           ATP-dependent RNA helicase DBP1 - yeast (Saccharomyces
           cerevisiae) >gi|1163095 (U43503) Dbp1p,Lph8p
           [Saccharomyces cerevisiae]
           Length = 617
           
 Score =  196 bits (494), Expect = 2e-49
 Identities = 127/392 (32%), Positives = 210/392 (53%), Gaps = 29/392 (7%)

Query: 30  LKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLL------- 82
           L + L+  I    F  P+ +Q  +I  +  G+D++A AQ+G+GKT  F   L        
Sbjct: 161 LDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRSG 220

Query: 83  --------QAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDD 134
                   Q+   RK    AL+L+PTRELA+QI +  +       V    + GG  + + 
Sbjct: 221 PSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGAPIGNQ 280

Query: 135 LKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFA 194
           ++++ + GC  +  TPGR+ D++++  +   N++ LVLDEAD +L   +GF+ QI  I  
Sbjct: 281 MREVDR-GCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLD--MGFEPQIRHIVE 337

Query: 195 KLP----KNCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQ---YVVNVD 247
           +      +N Q ++ SAT   DI  + R F+++ + + V R   + E I Q   YV ++D
Sbjct: 338 ECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYVDDMD 397

Query: 248 KEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKV 307
           K+    D L   +  LT+    IF  TK+  D L+  LI  NF   ++HGD  Q ER++ 
Sbjct: 398 KKSALLDLLSAEHKGLTL----IFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERA 453

Query: 308 MNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAIN 367
           ++ F+   + +L++T V ARG+D+  V+ VINYDLP  I++Y+HRIGR+GR G  GVA +
Sbjct: 454 LSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATS 513

Query: 368 FITKADLAKLREIEKFYSIKINPMPANFAELS 399
           F    +   ++ + +  +     +P   ++LS
Sbjct: 514 FFNSNNQNIVKGLMEILNEANQEVPTFLSDLS 545


>gi|2072674|emb|CAB08305| (Z95120) rhlE [Mycobacterium tuberculosis]
           Length = 527
           
 Score =  196 bits (494), Expect = 2e-49
 Identities = 128/388 (32%), Positives = 206/388 (52%), Gaps = 27/388 (6%)

Query: 28  MNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDL 87
           + ++D+++R +   G + P +IQ   +   + G+DVI QA++G GKT  F + LLQ I  
Sbjct: 15  LGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQRITS 74

Query: 88  RKKDL------QALILSPTRELASQIGQVVKNLGDYMN--------------VNAFAITG 127
                      +AL++ PTREL  Q+   +   G Y+               ++  +I G
Sbjct: 75  GDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVVSIYG 134

Query: 128 GKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQ 187
           G+  +  ++ ++  G   V GTPGR+LD+ ++  LQ   + +LVLDEADE+L   LGF  
Sbjct: 135 GRPYEPQIEALRA-GADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLD--LGFLP 191

Query: 188 QIYDIFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISL--EGIKQYVVN 245
            I  I  ++P + Q ++ SATM   I+ + R FM  P  I  +    S   +  +Q+V  
Sbjct: 192 DIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVYR 251

Query: 246 VDKEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERD 305
               + K + +  +  +      +IF  TK+    ++  L +  FAV ++HGD+ Q  R+
Sbjct: 252 AHALD-KVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLARE 310

Query: 306 KVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVA 365
           K +  FRTG   VL++TDV ARGID+  V+ VINY  PE  + Y+HRIGR+GR GR GVA
Sbjct: 311 KALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVA 370

Query: 366 INFITKADLAKLREIEKFYSIKINPMPA 393
           +  +   +L +   I++   +  +P PA
Sbjct: 371 VTLVDWDELPRWSMIDQALGLG-SPDPA 397


>gi|2829912 (AC002291) Similar ATP-dependent RNA Helicase
           [Arabidopsis thaliana]
           Length = 845
           
 Score =  196 bits (493), Expect = 2e-49
 Identities = 116/371 (31%), Positives = 207/371 (55%), Gaps = 7/371 (1%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           ES+NL  ++   I   G++ P+ IQ + +  I+SG DV+A A++G+GKTA F I +L+ +
Sbjct: 31  ESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEKL 90

Query: 86  D--LRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGC 143
              + +  ++ALILSPTR+LA Q  +  K LG + ++    + GG +++D  +++ K G 
Sbjct: 91  KQHVPQGGVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTK-GP 149

Query: 144 QAVSGTPGRVLDMIKK-QMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQV 202
             +  TPGR++ ++ +   +  R V+ +V DEAD L    +GF +Q++ I  +L +N Q 
Sbjct: 150 DVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFG--MGFAEQLHQILTQLSENRQT 207

Query: 203 VVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDS 262
           ++ SAT+   + E  +  + +P  + +  +      +K   + V  EE     L  + + 
Sbjct: 208 LLFSATLPSALAEFAKAGLREPQLVRLDVENKISPDLKLSFLTVRPEEKYSALLYLVREH 267

Query: 263 LTITQ-CVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLIS 321
           ++  Q  +IF +TK  V++++      N      +GDM Q+ R   ++ FR   + +LI 
Sbjct: 268 ISSDQQTLIFVSTKHHVEFVNSLFKLENIEPSVCYGDMDQDARKIHVSRFRARKTMLLIV 327

Query: 322 TDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIE 381
           TD+ ARGID+  +  VIN+D P   + ++HR+GR+ R GR G A +F+T  D+  + ++ 
Sbjct: 328 TDIAARGIDIPLLDNVINWDFPPRPKIFVHRVGRAARAGRTGCAYSFVTPEDMPYMLDLH 387

Query: 382 KFYSIKINPMP 392
            F S  + P P
Sbjct: 388 LFLSKPVRPAP 398


>gi|1944405|gnl|PID|d1020349 (D86601) DEAD family RNA helicase; germ
           cell specific in Bombyx 5th instar larva, a material
           factor [Bombyx mori]
           Length = 601
           
 Score =  196 bits (492), Expect = 3e-49
 Identities = 119/372 (31%), Positives = 205/372 (54%), Gaps = 20/372 (5%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           E+ NL+  +L  +   G+  P+ IQ  AI  I+SG+D++  AQ+G+GKTA F + ++  +
Sbjct: 183 ETANLRKYVLDNVLKAGYRKPTPIQKNAIPIIMSGRDLMGCAQTGSGKTAAFLVPIINML 242

Query: 86  DLRKKDL---------QALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLK 136
               KDL         Q +I+SPTREL  QI    +    Y +V   A+  G T      
Sbjct: 243 LQDPKDLISENGCAQPQVIIVSPTRELTLQIFNEARKFS-YGSVLKVAVAYGGTAVRHQG 301

Query: 137 KMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGF-----KQQIYD 191
                GC  +  TPGR+ D +++  +   +V+ +VLDEAD +L   +GF     K  ++ 
Sbjct: 302 DNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLD--MGFMPSIEKMMLHP 359

Query: 192 IFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEW 251
              +  K  Q ++ SAT  +DI  +  +F+N+ + + V     +   ++Q  + V K E 
Sbjct: 360 TMVETTKR-QTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYE- 417

Query: 252 KFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDF 311
           K ++L  + +     + ++F  TK+  D+++  L +      S+HGD  Q ER++ + +F
Sbjct: 418 KRNSLKQLIEENDGKRILVFVETKRNADFIAAMLSEQQLLTSSIHGDRMQREREEALQNF 477

Query: 312 RTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFI-T 370
           ++G   +L++T V ARG+D++ V +V+NYDLP+ I+ Y+HRIGR+GR G +G A++F  +
Sbjct: 478 KSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIGRTGRVGNRGKAVSFYDS 537

Query: 371 KADLAKLREIEK 382
             DLA + ++ K
Sbjct: 538 DQDLALVADLSK 549


>gi|3845295 (AE001421) RNA helicase [Plasmodium falciparum]
           Length = 562
           
 Score =  195 bits (490), Expect = 5e-49
 Identities = 122/367 (33%), Positives = 201/367 (54%), Gaps = 10/367 (2%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           E +N+ +++L  I   G++ P+ IQ   +      KD+I  +++G+GKTA F I +LQ +
Sbjct: 159 EDLNICEEILESIKELGWKKPTEIQREILPHAFLKKDIIGLSETGSGKTACFIIPILQDL 218

Query: 86  DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
            + K+   AL++SPTREL  QI Q  + LG  + +N   I GG  +      + K     
Sbjct: 219 KVNKQSFYALVISPTRELCIQISQNFQALGMNLLINICTIYGGVDIVTQSLNLAKKPNVI 278

Query: 146 VSGTPGRVLDMIKK-QMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVV 204
           VS TPGR+LD +   +    +N++ LV DEAD+LLS+   F+  I  +   LP N    +
Sbjct: 279 VS-TPGRILDHLNNTKGFNLKNLKYLVFDEADKLLSQ--DFESSINKLLLILPPNRITFL 335

Query: 205 VSATMNKDILEVTRKFMNDPVKILVKRDEISLEG-IKQYVVNVDKEEWKF-DTLCDIYDS 262
            SATM K++ ++ +  + +PVK+ V     ++   I+ Y+    K ++ +  +LC  Y +
Sbjct: 336 FSATMTKNVAKLKKACLKNPVKVEVSNKYSTVSTLIETYIFLPLKYKYTYLSSLCFHYQT 395

Query: 263 LTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLIST 322
             I      C T +K+++  + L       + +HG + Q +R   +N F+     +LIST
Sbjct: 396 RNIIIFTNTCATAQKLNFFCRNL---GLKSICLHGKLTQNQRLSSLNSFKVNKYNILIST 452

Query: 323 DVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEK 382
            V ARG+D+Q + +VIN+D+    E YIHR+GR+ R GR G +I F+T+ D+     IEK
Sbjct: 453 QVGARGLDLQDIKIVINFDICSCKE-YIHRVGRTARAGRSGKSITFVTQYDVENFLAIEK 511

Query: 383 FYSIKIN 389
             + KI+
Sbjct: 512 QLNKKID 518


>gi|529704 (U13070) similar to RNA helicases [Caenorhabditis
           elegans]
           Length = 701
           
 Score =  194 bits (489), Expect = 7e-49
 Identities = 124/384 (32%), Positives = 199/384 (51%), Gaps = 38/384 (9%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           E     D++ + +   G+  P+ IQ +AI   +  +DVI  A++G+GKTA F + LL  I
Sbjct: 304 EEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWI 363

Query: 86  -DLRKKDLQ--------ALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLK 136
             L K + Q        A+I++PTRELA QI +     G  + +   ++ GG + +D   
Sbjct: 364 TSLPKMERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASREDQGM 423

Query: 137 KMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKL 196
           K++  G + V  TPGR+LD+++ + L       ++LDEAD +L   +GF+  +  +   +
Sbjct: 424 KLRM-GVEVVIATPGRLLDVLENRYLLLNQCTYVILDEADRMLD--MGFEPDVQKVLEYM 480

Query: 197 P-------------------------KNCQVVVVSATMNKDILEVTRKFMNDPVKILVKR 231
           P                         K  Q V+ +ATM+  I  + R+++  P  + +  
Sbjct: 481 PDTNMKKDTDEFDNEEALMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGS 540

Query: 232 DEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFA 291
                E ++Q V  V  E+ K   L ++ +S      +IF N KK  D LS+ L +  F 
Sbjct: 541 AGKPTERVEQVVYMVP-EDRKRKKLVEVLESQFQPPIIIFVNQKKGADMLSKGLTKLGFK 599

Query: 292 VVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIH 351
              +HG   Q++R+  +   + G S +L++TDV  RGIDV+ VSLV+NYD+ + IE+Y H
Sbjct: 600 PTVLHGGKGQDQREYALQALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTH 659

Query: 352 RIGRSGRFGRKGVAINFITKADLA 375
           RIGR+GR G+ G AI F+T  D A
Sbjct: 660 RIGRTGRAGKHGKAITFLTPDDTA 683


>gi|4126714|gnl|PID|d1037697 (AB016603) DEAD-Box Protein [Ciona
           intestinalis]
           Length = 669
           
 Score =  194 bits (488), Expect = 9e-49
 Identities = 123/391 (31%), Positives = 210/391 (53%), Gaps = 25/391 (6%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           E  NL++ +L  +   G++ P+ +Q  +I  I + +D++A AQ+G+GKTA F + +L  +
Sbjct: 216 EMANLQETILVNVQKAGYDRPTPVQKYSIPIINADRDLMACAQTGSGKTAAFLLPVLTKL 275

Query: 86  D---------LRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLK 136
                       KK  QA+I+ PTREL +QI    +       ++   + GG ++   ++
Sbjct: 276 VESGVKSSEFSEKKTPQAIIIGPTRELVNQIFLEARKFSRSTIIHPVVVYGGTSVGYQIR 335

Query: 137 KMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKL 196
            +QK GC  +  TPGR++D I + ++   NV+ ++LDEAD +L   +GF+ +I  + + L
Sbjct: 336 AVQK-GCDVLIATPGRLMDFINRGLIGLENVRFIILDEADRMLD--MGFESEIRKLVS-L 391

Query: 197 P-----KNCQVVVVSATMNKDILEVTRKFMNDPVKIL-VKRDEISLEGIKQYVVNV---D 247
           P      N   ++ SAT   +I ++   F+ +    L V R   +   + Q V++V   D
Sbjct: 392 PGMPQKNNRHTLMFSATFPDEIQKLAHDFLREDFLFLTVGRVGGACSDVTQTVISVEWKD 451

Query: 248 KEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKV 307
           K     + + D+ +  T ++ ++F  TK+  D+L+  L Q +F   S+HGD  Q++R++ 
Sbjct: 452 KRSKLLELIADVNE--TKSRTLVFVETKRGADFLACVLCQEDFPTTSIHGDRLQQDREQA 509

Query: 308 MNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAIN 367
           + DF+     +L++T V ARG+D+ +V  VINYD+P  I+ Y+HRIGR+GR G  G A  
Sbjct: 510 LRDFKLAVCPILVATSVAARGLDIPKVEHVINYDMPREIDEYVHRIGRTGRCGNLGRATT 569

Query: 368 FI-TKADLAKLREIEKFYSIKINPMPANFAE 397
           F   K D    R + K  S     +P    E
Sbjct: 570 FFDNKKDANLARSLVKILSEAQQEVPGWLGE 600


>gi|4126716|gnl|PID|d1037698 (AB016604) DEAD-Box Protein [Ciona
           intestinalis]
           Length = 659
           
 Score =  194 bits (488), Expect = 9e-49
 Identities = 123/391 (31%), Positives = 210/391 (53%), Gaps = 25/391 (6%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           E  NL++ +L  +   G++ P+ +Q  +I  I + +D++A AQ+G+GKTA F + +L  +
Sbjct: 206 EMANLQETILVNVQKAGYDRPTPVQKYSIPIINADRDLMACAQTGSGKTAAFLLPVLTKL 265

Query: 86  D---------LRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLK 136
                       KK  QA+I+ PTREL +QI    +       ++   + GG ++   ++
Sbjct: 266 VESGVKSSEFSEKKTPQAIIIGPTRELVNQIFLEARKFSRSTIIHPVVVYGGTSVGYQIR 325

Query: 137 KMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKL 196
            +QK GC  +  TPGR++D I + ++   NV+ ++LDEAD +L   +GF+ +I  + + L
Sbjct: 326 AVQK-GCDVLIATPGRLMDFINRGLIGLENVRFIILDEADRMLD--MGFESEIRKLVS-L 381

Query: 197 P-----KNCQVVVVSATMNKDILEVTRKFMNDPVKIL-VKRDEISLEGIKQYVVNV---D 247
           P      N   ++ SAT   +I ++   F+ +    L V R   +   + Q V++V   D
Sbjct: 382 PGMPQKNNRHTLMFSATFPDEIQKLAHDFLREDFLFLTVGRVGGACSDVTQTVISVEWKD 441

Query: 248 KEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKV 307
           K     + + D+ +  T ++ ++F  TK+  D+L+  L Q +F   S+HGD  Q++R++ 
Sbjct: 442 KRSKLLELIADVNE--TKSRTLVFVETKRGADFLACVLCQEDFPTTSIHGDRLQQDREQA 499

Query: 308 MNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAIN 367
           + DF+     +L++T V ARG+D+ +V  VINYD+P  I+ Y+HRIGR+GR G  G A  
Sbjct: 500 LRDFKLAVCPILVATSVAARGLDIPKVEHVINYDMPREIDEYVHRIGRTGRCGNLGRATT 559

Query: 368 FI-TKADLAKLREIEKFYSIKINPMPANFAE 397
           F   K D    R + K  S     +P    E
Sbjct: 560 FFDNKKDANLARSLVKILSEAQQEVPGWLGE 590


>gi|2134051|pir||I51235 DEAD box protein - African clawed frog
           (fragment) >gi|2896107 (AF046043) DEAD box protein
           [Xenopus laevis]
           Length = 700
           
 Score =  194 bits (487), Expect = 1e-48
 Identities = 118/362 (32%), Positives = 203/362 (55%), Gaps = 18/362 (4%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTI------ 79
           E  NL + L R +   G+   + +Q  +I  I++G+D++A AQ+G+GKTA F +      
Sbjct: 277 EEANLCETLRRNVARAGYVKLTPVQKHSIPIIMAGRDLMACAQTGSGKTAAFLLPILSYM 336

Query: 80  ---GLLQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLK 136
              G+  +  L+ ++ +A+I++PTREL +QI    +       V    + GG      ++
Sbjct: 337 MNEGITASQYLQLQEPEAIIIAPTRELINQIYLDARKFSYGTCVRPVVVYGGIQPVHAMR 396

Query: 137 KMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAK- 195
            ++K GC  +  TPGR+LD++ K+ +    ++ LVLDEAD +L   +GF  +I  +  K 
Sbjct: 397 DVEK-GCNILCATPGRLLDIVSKEKIGLSKLRYLVLDEADRMLD--MGFAPEIEKLMTKP 453

Query: 196 ---LPKNCQVVVVSATMNKDILEVTRKFM-NDPVKILVKRDEISLEGIKQYVVNVDKEEW 251
                +  Q ++ SAT  ++I  +   ++ ++ + ++V     +   + Q V+ + +E  
Sbjct: 454 GMPTKEKRQTLMFSATYPEEIRRLASNYLKSEHLFVVVGLVGGACSDVAQTVLEM-RENG 512

Query: 252 KFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDF 311
           K + L +I  S    + +IF NTKKK D+++  L Q  F+  S+HGD +Q +R+  + DF
Sbjct: 513 KMEKLLEILKSSEKERTMIFVNTKKKADFIAGYLCQEKFSSTSIHGDREQYQRESALWDF 572

Query: 312 RTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITK 371
           RTG   V++ T V ARG+D++ V  VINYD+P+ ++ Y+HRIGR+GR G  G A +F   
Sbjct: 573 RTGKCTVIVCTAVAARGLDIENVQHVINYDVPKEVDEYVHRIGRTGRCGNTGKATSFFNV 632

Query: 372 AD 373
            D
Sbjct: 633 QD 634


>gi|1076837|pir||S53813 probable RNA helicase - slime mold
           (Dictyostelium discoideum) >gi|1076843|pir||S49262 RNA
           helicase - slime mold (Dictyostelium discoideum)
           (fragment) >gi|550331|emb|CAA57418| (X81824) putative
           RNA helicase [Dictyostelium discoideum]
           Length = 566
           
 Score =  193 bits (485), Expect = 2e-48
 Identities = 118/396 (29%), Positives = 207/396 (51%), Gaps = 32/396 (8%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           +  NL  ++L  I   G+E PS IQ ++I   ++G+D++  A++G+GKT  F I +L  I
Sbjct: 148 QESNLPREILEAIRQLGYEKPSPIQMQSIPISLTGRDILGIAETGSGKTCAFVIPMLIYI 207

Query: 86  DLRK---KDLQA-----LILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKK 137
             +    KD +A     L+++PTREL  QI +  +N   +      ++ GG++++D   +
Sbjct: 208 SKQPRLTKDTEADGPYALVMAPTRELVQQIEKETRNFAQHFGFRVVSLVGGQSIEDQAYQ 267

Query: 138 MQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLP 197
           + K GC+ +  TPGR+ D ++K+ L       +VLDEAD ++   LGF+ Q+  +   +P
Sbjct: 268 VSK-GCEIIIATPGRLNDCLEKRYLVLNQCNYIVLDEADMMID--LGFEPQVTSVLDAMP 324

Query: 198 KNC---------------------QVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISL 236
            +                        ++ SATM   + ++++K++  P  I +      +
Sbjct: 325 SSFLKSEDDEMAEKQESDRSHIYRTTILFSATMPPLVEKLSKKYLRRPCTITIGEAGKVV 384

Query: 237 EGIKQYVVNVDKEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMH 296
           + I+Q V+ V  E  K + L  +         +IF N KK  D ++  L +   +   +H
Sbjct: 385 DRIRQTVIFVKSENDKKEHLTQLIKDGPPPPIIIFVNKKKHCDIIAPVLEECRVSYTILH 444

Query: 297 GDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRS 356
               QE+R+  +  F+     VLI+T V +RGI V  V+ VIN+D+P+ IE+Y HRIGR+
Sbjct: 445 SGRSQEQREAALEGFKKRKYEVLIATGVASRGIHVDGVTHVINFDIPKNIEDYTHRIGRT 504

Query: 357 GRFGRKGVAINFITKADLAKLREIEKFYSIKINPMP 392
           GR G  G+A +FIT  D+  + ++++  +   N +P
Sbjct: 505 GRAGSAGLASSFITDKDVEIMYDLKQILTSTNNIVP 540


>gi|3986287|gnl|PID|d1035980 (AB017003) DjVLGB [Dugesia japonica]
           Length = 781
           
 Score =  192 bits (482), Expect = 4e-48
 Identities = 123/357 (34%), Positives = 198/357 (55%), Gaps = 18/357 (5%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           + + L   +   I    ++ P+ IQ  AI  I+  +D++A AQ+G+GKTA F I ++  +
Sbjct: 187 DELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHL 246

Query: 86  ---DLRKKDL------QALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLK 136
              DL ++        + LIL+PTRELA QI    +       + +  + GG      ++
Sbjct: 247 VCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIR 306

Query: 137 KMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIF--A 194
           ++Q  GC  +  TPGR++D I+K  +     + +VLDEAD +L   +GF+ QI  I   +
Sbjct: 307 EVQM-GCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLD--MGFEPQIRKIIEES 363

Query: 195 KLPK--NCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWK 252
            +P   N Q ++ SAT  K+I ++   F+ + + + V R   + + IKQ ++ +   E K
Sbjct: 364 NMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQEIIYMTDVE-K 422

Query: 253 FDTLCDIYDSLTI-TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDF 311
            + L +I+++    T  +IF  TKK  D L++ L+   + V S+HGD  Q ER+  ++ F
Sbjct: 423 LNYLKNIFNTTAPNTLILIFVETKKGADSLARFLLSKGYPVSSIHGDRSQVEREAALSMF 482

Query: 312 RTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINF 368
           R G   +L++T V ARG+D+  V  VINYDLP  IE Y+HRIGR+GR G  G A +F
Sbjct: 483 RNGQCPILVATAVAARGLDIPNVKHVINYDLPSDIEEYVHRIGRTGRLGNHGRATSF 539


>gi|84895|pir||A31922 ATP-dependent RNA helicase homolog - fruit fly
           (Drosophila melanogaster) >gi|158796 (M23560) Mab4611
           antigen (vasa) [Drosophila melanogaster]
           Length = 648
           
 Score =  189 bits (475), Expect = 3e-47
 Identities = 119/368 (32%), Positives = 201/368 (54%), Gaps = 21/368 (5%)

Query: 27  SMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI- 85
           S +L+D ++  +   G++ P+ IQ  +I  I SG+D++A AQ+G+GKTA F + +L  + 
Sbjct: 236 SADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLL 295

Query: 86  ----DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKH 141
               +L     Q  I+SPTRELA QI    +       +    + GG + +   + + + 
Sbjct: 296 EDPHELELGRPQVCIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITR- 354

Query: 142 GCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKL---PK 198
           GC  V  TPGR+LD + +  +   + + +VLDEAD +L   +GF + +  I   +   P+
Sbjct: 355 GCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLD--MGFSEDMRRIMTHVTMRPE 412

Query: 199 NCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCD 258
           + Q ++ SAT  ++I  +  +F+ + V + +     +   +KQ +  V+K   K   L +
Sbjct: 413 H-QTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYA-KRSKLIE 470

Query: 259 IYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRV 318
           I  S      ++F  TK+  D+L+  L +  F   S+HGD  Q +R++ + DF+ G  +V
Sbjct: 471 IL-SEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKV 529

Query: 319 LISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFI-------TK 371
           LI+T V +RG+D++ +  VINYD+P  I++Y+HRIGR+GR G  G A +F          
Sbjct: 530 LIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFHPEKDRAIA 589

Query: 372 ADLAKLRE 379
           ADL K+ E
Sbjct: 590 ADLVKILE 597


>gi|1352826|sp|P09052|VASA_DROME VASA PROTEIN
           >gi|1054723|emb|CAA31405| (X12945) vasa [Drosophila
           melanogaster]
           Length = 661
           
 Score =  189 bits (475), Expect = 3e-47
 Identities = 119/368 (32%), Positives = 201/368 (54%), Gaps = 21/368 (5%)

Query: 27  SMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI- 85
           S +L+D ++  +   GF+ P+ IQ  +I  I SG+D++A AQ+G+GKTA F + +L  + 
Sbjct: 249 SADLRDIIIDNVNKSGFKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLL 308

Query: 86  ----DLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKH 141
               +L     Q +I+SPTRELA QI    +       +    + GG + +   + + + 
Sbjct: 309 EDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITR- 367

Query: 142 GCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKL---PK 198
           GC  V  TPGR+LD + +  +   + + +VLDEAD +L   +GF + +  I   +   P+
Sbjct: 368 GCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLD--MGFSEDMRRIMTHVTMRPE 425

Query: 199 NCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCD 258
           + Q ++ SAT  ++I  +  +F+ + V + +     +   +KQ +  V+K   K   L +
Sbjct: 426 H-QTLMFSATFPEEIQRMAGEFLKNYVSVAIGIVGGACSDVKQTIYEVNKYA-KRSKLIE 483

Query: 259 IYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRV 318
           I  S      ++F  TK+  D+L+  L +  F   S+HGD  Q +R++ + DF+ G  +V
Sbjct: 484 IL-SEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKV 542

Query: 319 LISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFI-------TK 371
           LI+T V +RG+D++ +  VINYD+P  I++Y+HRIGR+G  G  G A +F          
Sbjct: 543 LIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGCVGNNGRATSFFDPEKDRAIA 602

Query: 372 ADLAKLRE 379
           ADL K+ E
Sbjct: 603 ADLVKILE 610


>gi|2500525|sp|Q61496|DDX4_MOUSE DEAD BOX PROTEIN 4 (VASA HOMOLOG)
           (MVH) >gi|2137271|pir||I49638 Drosophila vasa homologue
           - mouse (fragment) >gi|286075|gnl|PID|d1004095 (D14859)
           Drosophila vasa homologue [Mus musculus]
           Length = 637
           
 Score =  188 bits (473), Expect = 5e-47
 Identities = 124/389 (31%), Positives = 214/389 (54%), Gaps = 19/389 (4%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           E  NL   L   I   G+   + +Q   I  +++G+D++A AQ+G+GKTA F + +L  +
Sbjct: 205 EEANLCQTLNNNIRKAGYTKLTPVQKYTIPIVLAGRDLMACAQTGSGKTAAFLLPILAHM 264

Query: 86  ------DLRKKDLQ---ALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLK 136
                   R K+LQ    +I++PTREL +QI    +       V +  I GG      ++
Sbjct: 265 MRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVISVVIYGGTQFGHSVR 324

Query: 137 KMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFA-- 194
           ++ + GC  +  TPGR++D+I K+ +  + V+ LVLDEAD +L   +GF  +I  + +  
Sbjct: 325 QIVQ-GCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADSMLD--MGFAPEIKKLISCP 381

Query: 195 --KLPKNCQVVVVSATMNKDILEVTRKFM-NDPVKILVKRDEISLEGIKQYVVNVDKEEW 251
                +  Q ++ SAT  ++I  +   F+ ++ + + V +   +   ++Q ++ V + + 
Sbjct: 382 GMPSKEQHQTLLFSATFPEEIQRLAGDFLKSNYLFVAVGQVGGACRDVQQTILQVGQYQ- 440

Query: 252 KFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDF 311
           K  +L   Y+++   + ++F  TKKK D+++  L Q   +  S+HGD +Q ER++ + DF
Sbjct: 441 KEKSLLRFYENIGDERTMVFVETKKKADFIATFLCQEKISSTSIHGDREQREREQALGDF 500

Query: 312 RTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFI-T 370
           R G   VL++T V ARG+D++ V  VIN+DLP  I+ Y+HRIGR+GR G  G AI+F  T
Sbjct: 501 RCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDT 560

Query: 371 KADLAKLREIEKFYSIKINPMPANFAELS 399
            +D    + + K  S     +PA   E++
Sbjct: 561 DSDNHLAQPLVKVLSDAQQDVPAWLEEIA 589


>gi|2500526|sp|Q64060|DDX4_RAT DEAD BOX PROTEIN 4 (VASA HOMOLOG)
           (RVLG) >gi|1083795|pir||JC2534 RVLG protein - rat
           >gi|806464|bbs|159938 (S75275) vasa-like gene protein,
           RVLG protein=putative DEAD box protein [rats,
           Wistar-Imanishi, testis, Peptide, 713 aa] [Rattus sp.]
           Length = 713
           
 Score =  185 bits (466), Expect = 3e-46
 Identities = 123/387 (31%), Positives = 213/387 (54%), Gaps = 15/387 (3%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           E  NL   L   I   G+   + +Q  +I  +++G+D++A AQ+G+GKTA F + +L  +
Sbjct: 276 EEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILAHM 335

Query: 86  ------DLRKKDLQ---ALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLK 136
                   R K+LQ    +I++PTREL +QI    +       V A  I GG      ++
Sbjct: 336 MRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQFGHSIR 395

Query: 137 KMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKL 196
           ++ + GC  +  TPGR++D+I K+ +  + V+ LVLDEAD +L    G + +       +
Sbjct: 396 QIVQ-GCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKKLISCPGM 454

Query: 197 P--KNCQVVVVSATMNKDILEVTRKFM-NDPVKILVKRDEISLEGIKQYVVNVDKEEWKF 253
           P  +  Q ++ SAT  ++I  +  +F+ ++ + + V +   +   ++Q ++ V    +K 
Sbjct: 455 PSKEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQSILQVGPV-FKK 513

Query: 254 DTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRT 313
             L +I  ++   + ++F  TKKK D+++  L Q   +  S+HGD +Q ER++ + DFR 
Sbjct: 514 RKLVEILRNIGDERPMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRC 573

Query: 314 GHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFI-TKA 372
           G   VL++T V ARG+D++ V  VIN++LP  I+ Y+HRIGR+GR G  G AI+F  T++
Sbjct: 574 GKCPVLVATSVAARGLDIENVQHVINFNLPSTIDEYVHRIGRTGRCGNTGRAISFFDTES 633

Query: 373 DLAKLREIEKFYSIKINPMPANFAELS 399
           D    + + K  S     +PA   E++
Sbjct: 634 DNHLAQPLVKVLSDAQQDVPAWLEEIA 660


>gi|1723271|sp|Q10202|YAXB_SCHPO PUTATIVE ATP-DEPENDENT RNA HELICASE
           C13F4.11C >gi|2130219|pir||S67386 hypothetical protein -
           fission yeast (Schizosaccharomyces pombe)
           >gi|1184007|gnl|PID|e221943 (Z69379) unknown
           [Schizosaccharomyces pombe] >gi|3451298|emb|CAA20430|
           (AL031322) putative atp-dependent rna helicase
           [Schizosaccharomyces pombe]
           Length = 578
           
 Score =  185 bits (466), Expect = 3e-46
 Identities = 125/369 (33%), Positives = 196/369 (52%), Gaps = 21/369 (5%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQ-- 83
           + +++   L  G+ +Y  + P+ IQ+     +++G+DV+  A++G+GKT  F I  LQ  
Sbjct: 170 DELDVSAKLREGLKNY--KEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYL 227

Query: 84  -AIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHG 142
             +   K   + L++SPTRELA Q  + + +L    N+ A  + GG    +  +  +   
Sbjct: 228 NGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQARAAKN-- 285

Query: 143 CQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPK---- 198
              + GTPGR+LD+I    +    V  LVLDEAD +L    GF+Q I +I +  P     
Sbjct: 286 ASVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDT--GFEQDIRNIISHTPDPTRN 343

Query: 199 -NCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISL-EGIKQYVVNVDKEEWKFDTL 256
            + Q V  SAT  + +  +   F+ DPVKI +  DE++  + I Q V  +D    K   L
Sbjct: 344 GSRQTVFFSATWPESVRALAATFLKDPVKITIGSDELAASQNITQIVEILDDPRSKERML 403

Query: 257 CDIYDSLTIT-----QCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDF 311
            ++      +     + +IF   KK+   +   L +  + VV +HGDM Q  R + +NDF
Sbjct: 404 DNLLRKHLSSGGKDDKILIFVLYKKEAARVEGTLARK-YNVVGIHGDMSQGARLQALNDF 462

Query: 312 RTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITK 371
           ++G   VL++TDV ARG+D+ +V LVIN   P  IE+Y+HRIGR+GR   KG AI F T 
Sbjct: 463 KSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFFTP 522

Query: 372 ADLAKLREI 380
            D +   E+
Sbjct: 523 QDKSHAGEL 531


>gi|1170186|sp|P20448|DBP4_YEAST PROBABLE ATP-DEPENDENT RNA HELICASE
           DBP4 (HELICASE CA4) (HELICASE UF1)
           >gi|1078295|pir||S56805 probable RNA helicase CA4 -
           yeast (Saccharomyces cerevisiae)
           >gi|1008155|emb|CAA89324| (Z49308) ORF YJL033w
           [Saccharomyces cerevisiae]
           Length = 770
           
 Score =  185 bits (464), Expect = 6e-46
 Identities = 117/387 (30%), Positives = 210/387 (54%), Gaps = 22/387 (5%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           + + + D  L+G+    F   + IQ+ +I   + G DV+A A++G+GKT  F + +++ +
Sbjct: 44  KDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEKL 103

Query: 86  DLRK----KDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKH 141
              K      L ALI+SPTRELA QI +V+  +G + + +A  + GGK +K +L+++ + 
Sbjct: 104 YREKWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVKFELERISR- 162

Query: 142 GCQAVSGTPGRVLDMIKKQM-LQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNC 200
               + GTPGR+L  + + + L T N+QMLVLDEAD  L   +GFK+ +  I + L  + 
Sbjct: 163 -INILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLD--MGFKKTLDAIVSTLSPSR 219

Query: 201 QVVVVSATMNKDILEVTRKFMNDPVKI--------LVKRDEISLEGIKQYVVNVDKEEWK 252
           Q ++ SAT ++ + ++ R  + D   +         V ++  + E ++Q+ + V   + K
Sbjct: 220 QTLLFSATQSQSVADLARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLAD-K 278

Query: 253 FDTLCDIYDSLTITQCVIFCNTKKKVDWLSQ--RLIQSNFAVVSMHGDMKQEERDKVMND 310
            D L     S    + ++F ++ K+V ++ +  R +Q   +++ +HG  KQ  R + ++ 
Sbjct: 279 LDILFSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRARTETLDK 338

Query: 311 FRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFIT 370
           F       L +TDV ARGID   V  V+  D PE ++ YIHR+GR  R+G+KG ++  +T
Sbjct: 339 FNRAQQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLIMLT 398

Query: 371 KADLAKLREIEKFYSIKINPMPANFAE 397
             +      +++  + KI P   N  +
Sbjct: 399 PQEQEAF--LKRLNARKIEPGKLNIKQ 423


>gi|1619952 (U72149) putative RNA helicase [Saccharomyces
           cerevisiae]
           Length = 770
           
 Score =  185 bits (464), Expect = 6e-46
 Identities = 117/387 (30%), Positives = 210/387 (54%), Gaps = 22/387 (5%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           + + + D  L+G+    F   + IQ+ +I   + G DV+A A++G+GKT  F + +++ +
Sbjct: 44  KDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEKL 103

Query: 86  DLRK----KDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKH 141
              K      L ALI+SPTRELA QI +V+  +G + + +A  + GGK +K +L+++ + 
Sbjct: 104 YREKWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVKFELERISR- 162

Query: 142 GCQAVSGTPGRVLDMIKKQM-LQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNC 200
               + GTPGR+L  + + + L T N+QMLVLDEAD  L   +GFK+ +  I + L  + 
Sbjct: 163 -INILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLD--MGFKKTLDAIVSTLSPSR 219

Query: 201 QVVVVSATMNKDILEVTRKFMNDPVKI--------LVKRDEISLEGIKQYVVNVDKEEWK 252
           Q ++ SAT ++ + ++ R  + D   +         V ++  + E ++Q+ + V   + K
Sbjct: 220 QTLLFSATQSQSVADLARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLAD-K 278

Query: 253 FDTLCDIYDSLTITQCVIFCNTKKKVDWLSQ--RLIQSNFAVVSMHGDMKQEERDKVMND 310
            D L     S    + ++F ++ K+V ++ +  R +Q   +++ +HG  KQ  R + ++ 
Sbjct: 279 LDILFSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRARTETLDK 338

Query: 311 FRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFIT 370
           F       L +TDV ARGID   V  V+  D PE ++ YIHR+GR  R+G+KG ++  +T
Sbjct: 339 FNRAQQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLIMLT 398

Query: 371 KADLAKLREIEKFYSIKINPMPANFAE 397
             +      +++  + KI P   N  +
Sbjct: 399 PQEQEAF--LKRLNARKIEPGKLNIKQ 423


>gi|1172596|sp|P23394|PR28_YEAST PRE-MRNA SPLICING FACTOR RNA
           HELICASE PRP28 (HELICASE CA8) >gi|101502|pir||A39624
           probable helicase (EC 3.6.1.-) PRP28 - yeast
           (Saccharomyces cerevisiae) >gi|666103|emb|CAA40255|
           (X56934) pre-mRNA splicing factor RNA helicase PRP28
           (helicase CA8) [Saccharomyces cerevisiae]
           >gi|817829|emb|CAA89729| (Z49701) Prp28p [Saccharomyces
           cerevisiae]
           Length = 588
           
 Score =  182 bits (458), Expect = 3e-45
 Identities = 130/392 (33%), Positives = 213/392 (54%), Gaps = 38/392 (9%)

Query: 33  DLLRGIYS-YGFEAPSSIQSRAITQIISGK---DVIAQAQSGTGKTATFTIGLLQAIDL- 87
           DLLR I     F +P+ IQ   I  + + K   D +  A +G+GKT  F I +L  +   
Sbjct: 183 DLLRVIIQELRFPSPTPIQRITIPNVCNMKQYRDFLGVASTGSGKTLAFVIPILIKMSRS 242

Query: 88  --RKKDLQ------ALILSPTRELASQIGQVVKNLGDYMNVNA------FAITGGKTLKD 133
             R   L+      ALIL+PTREL  QI +  + +    +  +       +I GG +L +
Sbjct: 243 PPRPPSLKIIDGPKALILAPTRELVQQIQKETQKVTKIWSKESNYDCKVISIVGGHSL-E 301

Query: 134 DLKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIF 193
           ++      GC  +  TPGR++D ++  +L  + V+ LVLDEAD+++   LGF+ Q+ +I 
Sbjct: 302 EISFSLSEGCDILVATPGRLIDSLENHLLVMKQVETLVLDEADKMID--LGFEDQVTNIL 359

Query: 194 AKLPKNC------QVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVD 247
            K+  N       Q ++ +ATM   I ++   +M  PV   +  +  S   I+Q V   D
Sbjct: 360 TKVDINADSAVNRQTLMFTATMTPVIEKIAAGYMQKPVYATIGVETGSEPLIQQVVEYAD 419

Query: 248 KEEWKFDTLCDI---YDSLTITQCVIFCNTKKKVDWLSQRLI-QSNFAVVSMHGDMKQEE 303
            +E KF  L  I   YD       +IF N K+  DWL+++   ++N  V  +HG   QE+
Sbjct: 420 NDEDKFKKLKPIVAKYDP----PIIIFINYKQTADWLAEKFQKETNMKVTILHGSKSQEQ 475

Query: 304 RDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKG 363
           R+  +  FRT   +++I+T+V ARG+D+  VSLV+N+ + + +++YIHRIGR+GR   +G
Sbjct: 476 REHSLQLFRTNKVQIMIATNVAARGLDIPNVSLVVNFQISKKMDDYIHRIGRTGRAANEG 535

Query: 364 VAINFITKA-DLAKLREIEKFYSIKINPMPAN 394
            A++F++ A D + +RE+ K Y  K +P+ +N
Sbjct: 536 TAVSFVSAAEDESLIRELYK-YVRKHDPLNSN 566


>gi|1173121|sp|P45818|ROK1_YEAST ATP-DEPENDENT RNA HELICASE ROK1
           >gi|2131186|pir||S59649 ATP-dependent RNA helicase ROK1
           - yeast (Saccharomyces cerevisiae)
           >gi|607182|emb|CAA84384| (Z34901) ATP-dependent RNA
           helicase [Saccharomyces cerevisiae]
           >gi|971382|emb|CAA59758| (X85757) putative ATP dependent
           RNA helicase [Saccharomyces cerevisiae]
           >gi|1322774|emb|CAA96883| (Z72693) ORF YGL171w
           [Saccharomyces cerevisiae]
           Length = 564
           
 Score =  176 bits (441), Expect = 3e-43
 Identities = 121/378 (32%), Positives = 196/378 (51%), Gaps = 23/378 (6%)

Query: 34  LLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI--DLRKKD 91
           LL  +   GF  P+ IQ   I   ++ +DV+A   +G+GKT  F I L+Q I  D +   
Sbjct: 133 LLNNLIENGFTEPTPIQCECIPVALNNRDVLACGPTGSGKTLAFLIPLVQQIIDDKQTAG 192

Query: 92  LQALILSPTRELASQIG--------QVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGC 143
           L+ LI+SPT+ELA+QI         ++       + V   + + G  LK+ +   +K+  
Sbjct: 193 LKGLIISPTKELANQIFIECFKLSYKIFLEKKRPLQVALLSKSLGAKLKNKVVSDKKY-- 250

Query: 144 QAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPK-NCQV 202
             +  TP R++D++K + L    V+ L+ DEAD+L  +T  F +Q  DI +   + + + 
Sbjct: 251 DIIISTPLRLIDVVKNEALDLSKVKHLIFDEADKLFDKT--FVEQSDDILSACREPSLRK 308

Query: 203 VVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDS 262
            + SAT+  ++ E+ +  M DPV++++   E +   I+Q ++    EE K   +  +   
Sbjct: 309 AMFSATIPSNVEEIAQSIMMDPVRVIIGHKEAANTNIEQKLIFCGNEEGKLIAIRQLVQE 368

Query: 263 LTITQ-CVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLIS 321
                  +IF  +  +   L   L+     V  +H +    +RD+++  F+TG    LI 
Sbjct: 369 GEFKPPIIIFLESITRAKALYHELMYDRINVDVIHAERTALQRDRIIERFKTGELWCLIC 428

Query: 322 TDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIE 381
           TDV ARGID + V+LVINYD+P   + Y+HRIGR+GR GR G AI F TK D   ++ I 
Sbjct: 429 TDVLARGIDFKGVNLVINYDVPGSSQAYVHRIGRTGRGGRSGKAITFYTKQDSVAIKPI- 487

Query: 382 KFYSIKINPMPANFAELS 399
                 IN M  +  E+S
Sbjct: 488 ------INVMKQSGCEVS 499


>gi|1764094 (U81597) ATP-dependent RNA helicase [Leishmania
           amazonensis]
           Length = 855
           
 Score =  175 bits (439), Expect = 5e-43
 Identities = 118/381 (30%), Positives = 199/381 (51%), Gaps = 15/381 (3%)

Query: 26  ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
           +S NL+  LL  I   GF  P+ IQ +AI  ++ G DV+A A++G+GKTA F I +L  +
Sbjct: 27  QSFNLEKPLLDAILKQGFSVPTPIQRKAIPPMLQGNDVVAMARTGSGKTAAFLIPMLNTL 86

Query: 86  DLRKK--DLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGC 143
               K   ++ L+LSPTREL+ QI +    L  ++++   A+ GG ++    + +  +  
Sbjct: 87  KAHSKIVGIRGLVLSPTRELSLQILRNGFALNKFLDLRFAALVGGDSMDQQFELLASNP- 145

Query: 144 QAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVV 203
             V  TPGR+L ++++  L   +V+ LVLDEAD L    LG + QI  I  KLP++CQ  
Sbjct: 146 DIVVATPGRLLHIMEEASLHLTSVRCLVLDEADRLFE--LGLQPQIGAIMQKLPESCQRA 203

Query: 204 VVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSL 263
           + SATM   + E T  ++++PV I +  +    + +KQ    V  +E     +  +   L
Sbjct: 204 LFSATMPTVLAEFTSAWLHNPVVIRLDSEMKLSDQLKQSAFLVRNDEKVAALIVLLKRVL 263

Query: 264 TI-------TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHS 316
            +        Q +IF  +K  V++L   L   + +  ++HG M QE R   +  F    S
Sbjct: 264 HVGEAAANNAQALIFVESKFHVEFLLMILTAYSISTSAVHGQMDQEARRLAVRSFAKRES 323

Query: 317 RVLISTDVWARGIDVQ-QVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLA 375
            V++ TDV ARG  +   +  ++ +  P   + ++HR+GR  R GR G A + +T  D  
Sbjct: 324 SVMVVTDVAARGYGLDLLLDNIVYFSFPFNPKLFVHRVGRVARAGRSGTAYSIMTFEDFP 383

Query: 376 KLREIEKFYS--IKINPMPAN 394
              ++ +F    ++ +P+P +
Sbjct: 384 YYVDLMQFIGRPLQSSPVPGD 404


>gi|2443870 (AC002985) R27090_2 [Homo sapiens]
           Length = 483
           
 Score =  170 bits (427), Expect = 1e-41
 Identities = 112/376 (29%), Positives = 189/376 (49%), Gaps = 6/376 (1%)

Query: 28  MNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDL 87
           + L   L+      G + P+ +Q   I  I+ G+D +  A++G+GKTA F + +LQ +  
Sbjct: 7   LGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSE 66

Query: 88  RKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVS 147
               +  L+L+PTRELA QI +  + LG  + +    I GG  +     ++ +     V 
Sbjct: 67  DPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKP-HVVI 125

Query: 148 GTPGRVLDMIKKQ-MLQTRNVQMLVLDEADELLSE-TLGFKQQIYDIFAKLPKNCQVVVV 205
            TPGR+ D ++       + ++ LV+DEAD LL +    F   +  I A +P   Q ++ 
Sbjct: 126 ATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARRQTLLF 185

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVD---KEEWKFDTLCDIYDS 262
           SAT+   + E+     N P     +    ++E + Q  + V    K+ +    +    D 
Sbjct: 186 SATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQRFQDE 245

Query: 263 LTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLIST 322
                 +IF NT K    L   L + +F  V++H  MKQ+ER   +  F++   R+LI+T
Sbjct: 246 HEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSIYRILIAT 305

Query: 323 DVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEK 382
           DV +RG+D+  V +VIN++ P + + YIHR+GR+ R GR+G AI  +T+ D+  +  IE+
Sbjct: 306 DVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVHAIEE 365

Query: 383 FYSIKINPMPANFAEL 398
               K+       AE+
Sbjct: 366 QIKKKLEEFSVEEAEV 381


>gi|1351666|sp|Q09916|YAK2_SCHPO PUTATIVE ATP-DEPENDENT RNA HELICASE
           C1F7.02C >gi|2130294|pir||S62574 hypothetical protein
           SPAC1F7.02c - fission yeast (Schizosaccharomyces pombe)
           >gi|1067204|emb|CAA91949| (Z67998) unknown
           [Schizosaccharomyces pombe]
           Length = 578
           
 Score =  166 bits (417), Expect = 2e-40
 Identities = 118/381 (30%), Positives = 205/381 (52%), Gaps = 21/381 (5%)

Query: 28  MNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATF---TIGLLQA 84
           + L +++ + I   GFE  + IQ R+I  +++G+DV+  A++G+GKT  F   TI +L A
Sbjct: 94  LQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLYA 153

Query: 85  IDLRKKD-LQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGC 143
           +  + ++    +I+SPTRELA QI  V K L  Y +     + GG   + +  K+ K G 
Sbjct: 154 LKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVK-GV 212

Query: 144 QAVSGTPGRVLDMIKKQM-LQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLP-KNCQ 201
             +  TPGR+LD ++       RN++ LV+DEAD +L   +GF+ ++  I   LP +N Q
Sbjct: 213 NLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILE--IGFEDEMRQIMKILPSENRQ 270

Query: 202 VVVVSATMNKDILEVTRKFMNDPVKILVKRDE----ISLEGIKQYVVNVDKEEWKFDTLC 257
            ++ SAT    + ++ R  +  P  + V  D      ++EG++Q  V VD ++ +F  L 
Sbjct: 271 TLLFSATQTTKVEDLARISLK-PGPLYVNVDSGKPTSTVEGLEQGYVVVDSDK-RFLLLF 328

Query: 258 DIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSR 317
                    + ++F ++   V ++++ L   +  V+ +HG  KQ+ R     +F      
Sbjct: 329 SFLKRNLKKKVIVFMSSCASVKYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAEKG 388

Query: 318 VLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGV--AINFITKADLA 375
           +L+ T+V ARG+D+  V  ++ YD P+   +YIHR+GR+ R G KG   ++ F+  ++L 
Sbjct: 389 ILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTAR-GTKGTGKSLMFLAPSELG 447

Query: 376 KLREIEKFYSIKIN--PMPAN 394
            LR + K   + +N    PAN
Sbjct: 448 FLRYL-KTAKVSLNEFEFPAN 467


>gi|1488647|emb|CAA68193| (X99937) RNA helicase [Spinacia oleracea]
           Length = 685
           
 Score =  159 bits (398), Expect = 3e-38
 Identities = 116/390 (29%), Positives = 202/390 (51%), Gaps = 31/390 (7%)

Query: 27  SMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQA-I 85
           S  LKD L+    S G +A   IQ+     +I G D++ +A++G GKT  F + ++++ +
Sbjct: 115 SKPLKDVLI----SKGIKALFPIQAMTFDNVIDGCDLVGRARTGQGKTLAFVLPIVESLV 170

Query: 86  DLRKKDLQ---------ALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLK 136
           + R KDL+          L+L PTRELA+Q+    +  G  + + A ++ GG      + 
Sbjct: 171 NGRTKDLRRSGHGRLPSVLVLLPTRELATQVLADFQVYGGAVGLTACSVYGGAPFHSQIS 230

Query: 137 KMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKL 196
            + + G   V GTPGRV D+++K +L+  ++   VLDEADE+L   +GF   +  I  K+
Sbjct: 231 SLTR-GVDIVVGTPGRVKDLLEKGVLKLGSLLFRVLDEADEMLK--MGFVDDVELILGKV 287

Query: 197 P--KNCQVVVVSATMNKDILEVTRKFMNDPVKI--LVKRDEISLEGIKQYVVNVDKEEWK 252
                 Q ++ SAT+   + +++ +F+    K   LV   ++      +++V       +
Sbjct: 288 DHVSKVQTLLFSATLPSWVKQISTRFLKSAKKTVDLVSDQKMKASISVRHIVIPCSASAR 347

Query: 253 FDTLCDIYDSL-TITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDF 311
            D + DI     +  + +IF  TK+    L+  L  +      +HGD++Q +R+  +  F
Sbjct: 348 PDLIPDIIRCYGSGGRSIIFTETKESASQLAGLLTGAR----PLHGDIQQTQREVTLKGF 403

Query: 312 RTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITK 371
           RTG    L++T+V ARG+D+  V L+I  + P  +E+YIHR GR+GR G  GVA+  +  
Sbjct: 404 RTGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEDYIHRSGRTGRAGNTGVAV-MLYD 462

Query: 372 ADLAKLREIEKFYSIKIN----PMPANFAE 397
              + + +IE+   +K      P P + A+
Sbjct: 463 PKRSSVTKIERESGVKFEHLSAPQPVDVAK 492


>gi|1488521|emb|CAA68194| (X99938) RNA helicase [Arabidopsis
           thaliana]
           Length = 671
           
 Score =  152 bits (380), Expect = 4e-36
 Identities = 110/367 (29%), Positives = 185/367 (49%), Gaps = 23/367 (6%)

Query: 42  GFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI------DLRK----KD 91
           G EA   IQ+     ++ G D++ +A++G GKT  F + +L+++        RK    + 
Sbjct: 115 GIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRS 174

Query: 92  LQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPG 151
              L+L PTRELA Q+       G  + +++  + GG ++     K+ K G   V GTPG
Sbjct: 175 PSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLYGGDSIPVQEGKL-KRGVDIVVGTPG 233

Query: 152 RVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQV--VVVSATM 209
           R+ D I++Q L     +  VLDEADE+L   +GF + +  I  K+  + +V  ++ SAT+
Sbjct: 234 RIKDHIERQNLDFSYFKFRVLDEADEMLR--MGFVEDVELILGKVEDSTKVQTLLFSATL 291

Query: 210 NKDILEVTRKFMNDPVKI--LVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTIT- 266
              +  ++ +F+    K   LV  D++      +++     +      + DI    +   
Sbjct: 292 PSWVKNISNRFLKRDQKTIDLVGNDKMKASNSVRHIAIPCNKAAMARLIPDIISCYSSGG 351

Query: 267 QCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWA 326
           Q +IF  TK +V  LS  L  S     ++HG++ Q +R+  +  FR G    L++T+V A
Sbjct: 352 QTIIFAETKVQVSELSGLLDGSR----ALHGEIPQSQREVTLAGFRNGKFATLVATNVAA 407

Query: 327 RGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYSI 386
           RG+D+  V L+I  + P  +E YIHR GR+GR G  GV +  +  +  + +  IEK   I
Sbjct: 408 RGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTGVPVT-LYDSRKSSVSRIEKEAGI 466

Query: 387 KINPMPA 393
           K   + A
Sbjct: 467 KFEHLAA 473


>gi|3775997|emb|CAA09201| (AJ010462) RNA helicase [Arabidopsis
           thaliana]
           Length = 376
           
 Score =  150 bits (375), Expect = 2e-35
 Identities = 98/306 (32%), Positives = 160/306 (52%), Gaps = 5/306 (1%)

Query: 94  ALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRV 153
           A +LSPTRELA QI +  + LG  +++    + GG         + K     +  TPGR+
Sbjct: 12  ACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRMQQTIALGKRP-HVIVATPGRL 70

Query: 154 LD-MIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSATMNKD 212
            D M   +    ++++ LVLDEAD LL+E   F++ +  I  ++P   +  + SATM K 
Sbjct: 71  WDHMSDTKGFSLKSLKYLVLDEADRLLNED--FEKSLNQILEEIPLERKTFLFSATMTKK 128

Query: 213 ILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQCVIFC 272
           + ++ R  + +PVKI       +++ +KQ    V   ++K   L  I   +  +  +IF 
Sbjct: 129 VRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFV-AAKYKDCYLVYILSEMPESTSMIFT 187

Query: 273 NTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQ 332
            T     +L+  L    F  + + G M Q +R   +N F+ G   +L+ TDV +RG+D+ 
Sbjct: 188 RTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNILVCTDVASRGLDIP 247

Query: 333 QVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYSIKINPMP 392
            V +VINYD+P   ++YIHR+GR+ R GR GV I+ + + +L    +IEK    K+   P
Sbjct: 248 SVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQYELEWYIQIEKLIGKKLPEYP 307

Query: 393 ANFAEL 398
           A   E+
Sbjct: 308 AEEDEV 313


>gi|3775995|emb|CAA09200| (AJ010461) RNA helicase [Arabidopsis
           thaliana]
           Length = 363
           
 Score =  145 bits (361), Expect = 7e-34
 Identities = 84/244 (34%), Positives = 140/244 (56%), Gaps = 5/244 (2%)

Query: 152 RVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSATMNK 211
           R++D++K+  L    VQ +VLDEAD++L   +GF + +  I  KLP   Q ++ SATM  
Sbjct: 1   RIIDLMKRGALNLSEVQFVVLDEADQMLQ--VGFAEDVEIILQKLPAKRQSMMFSATMPS 58

Query: 212 DILEVTRKFMNDPVKI--LVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQCV 269
            I  +T+K++N+P+ I  +   D+   +GI  Y +  D           + +     +C+
Sbjct: 59  WIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVKEHGKGGKCI 118

Query: 270 IFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGI 329
           +F  TK+  D L+  L +S +   ++HGD+ Q +R++ +  FR G+  +L++TDV ARG+
Sbjct: 119 VFTQTKRDADRLAFGLAKS-YKCEALHGDISQAQRERTLAGFRDGNFSILVATDVAARGL 177

Query: 330 DVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYSIKIN 389
           DV  V LVI+Y+LP   E ++HR GR+GR G+KG AI    +     ++ IEK    + N
Sbjct: 178 DVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTRAVKMIEKEVGSRFN 237

Query: 390 PMPA 393
            +P+
Sbjct: 238 ELPS 241


>gi|3327394 (AC004483) putative RNA helicase [Arabidopsis thaliana]
           Length = 845
           
 Score =  143 bits (356), Expect = 3e-33
 Identities = 112/390 (28%), Positives = 194/390 (49%), Gaps = 48/390 (12%)

Query: 35  LRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQA 94
           L+ + + G    + +Q   +++ + GKD + +A++GTGK+  F   LL AI+   K + +
Sbjct: 387 LKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAF---LLPAIETVLKAMNS 443

Query: 95  ------------LILSPTRELASQIGQVVKNL-GDYMNVNAFAITGGKTLKDDLKKMQKH 141
                       LIL PTRELASQI    K L  ++  +    + GG   + D ++++  
Sbjct: 444 GKGVHKVAPIFVLILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGTRFRLDQQRLESE 503

Query: 142 GCQAVSGTPGRVLDMIKKQMLQTRNVQML---VLDEADELLSETLGFKQQIYDIFAKLPK 198
            CQ +  TPGR+LD I+ +   T  +  L   ++DEAD LL   LGFK+ +  I   LP+
Sbjct: 504 PCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLD--LGFKRDVEKIIDCLPR 561

Query: 199 NCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGI-----------KQYVVNVD 247
             Q ++ SAT+ K++  V++        +++KRD   ++ I           KQ  + V 
Sbjct: 562 QRQSLLFSATIPKEVRRVSQ--------LVLKRDHSYIDTIGLGCVETHDKVKQSCI-VA 612

Query: 248 KEEWKFDT----LCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEE 303
             E  F      L +  +++   + ++FC+T      +   L +    V  +H    Q  
Sbjct: 613 PHESHFHLVPHLLKEHINNMPDYKIIVFCSTGMVTSLMYTLLREMKLNVREIHARKPQLH 672

Query: 304 RDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKG 363
           R  V ++F+  +  +L+++DV ARG++   V+LVI   +P   E YIHR+GR+GR G+ G
Sbjct: 673 RTCVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGKGG 732

Query: 364 VAINFITKADLAKLREIEKFYSIKINPMPA 393
             +  I   +   L E++    + + P+PA
Sbjct: 733 KGLLLIAPWERYFLDELK---DLPLEPIPA 759


>gi|4832|emb|CAA41110| (X58099) eIF4a [Saccharomyces cerevisiae]
           Length = 89
           
 Score =  127 bits (315), Expect = 2e-28
 Identities = 61/87 (70%), Positives = 72/87 (82%)

Query: 312 RTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITK 371
           R+G SR+LISTD+ ARGIDVQQVSLVINYDLP   ENYIHRIGR GRFGRKGVAINF+T 
Sbjct: 1   RSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTN 60

Query: 372 ADLAKLREIEKFYSIKINPMPANFAEL 398
            D+  +RE+EKFYS +I  +P++ A L
Sbjct: 61  EDVGAMRELEKFYSTQIEELPSDIATL 87


>gi|2367301 (AE000458) ATP-dependent DNA helicase [Escherichia coli]
           Length = 610
           
 Score = 81.5 bits (198), Expect = 9e-15
 Identities = 87/381 (22%), Positives = 159/381 (40%), Gaps = 47/381 (12%)

Query: 40  SYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSP 99
           ++G++     Q   I  ++SG+D +    +G GK+  + I              AL+L+ 
Sbjct: 22  TFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQI-------------PALLLNG 68

Query: 100 TRELASQIGQVVKNLGDYMNVNAFA---ITGGKTLKDDLKKMQKHGCQA-----VSGTPG 151
              + S +  ++K+  D +  N  A   +   +T +  L+ M   GC+      +   P 
Sbjct: 69  LTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMT--GCRTGQIRLLYIAPE 126

Query: 152 RVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQ------QIYDIFAKLPKNCQVVVV 205
           R++     + L   N  +L +DEA  +      F+       Q+   F  LP        
Sbjct: 127 RLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATA 186

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
             T  +DI+ +    +NDP   L++        I+  ++   K     D L         
Sbjct: 187 DDTTRQDIVRLLG--LNDP---LIQISSFDRPNIRYMLMEKFKP---LDQLMRYVQEQRG 238

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
              +I+CN++ KV+  + RL     +  + H  ++   R  V   F+    +++++T  +
Sbjct: 239 KSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAF 298

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLR------- 378
             GI+   V  V+++D+P  IE+Y    GR+GR G    A+ F   AD+A LR       
Sbjct: 299 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKP 358

Query: 379 --EIEKFYSIKINPMPANFAE 397
             +++     K+N M A FAE
Sbjct: 359 QGQLQDIERHKLNAMGA-FAE 378


>gi|2851488|sp|P15043|RECQ_ECOLI ATP-DEPENDENT DNA HELICASE RECQ
           Length = 608
           
 Score = 81.5 bits (198), Expect = 9e-15
 Identities = 87/381 (22%), Positives = 159/381 (40%), Gaps = 47/381 (12%)

Query: 40  SYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSP 99
           ++G++     Q   I  ++SG+D +    +G GK+  + I              AL+L+ 
Sbjct: 20  TFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQI-------------PALLLNG 66

Query: 100 TRELASQIGQVVKNLGDYMNVNAFA---ITGGKTLKDDLKKMQKHGCQA-----VSGTPG 151
              + S +  ++K+  D +  N  A   +   +T +  L+ M   GC+      +   P 
Sbjct: 67  LTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMT--GCRTGQIRLLYIAPE 124

Query: 152 RVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQ------QIYDIFAKLPKNCQVVVV 205
           R++     + L   N  +L +DEA  +      F+       Q+   F  LP        
Sbjct: 125 RLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATA 184

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
             T  +DI+ +    +NDP   L++        I+  ++   K     D L         
Sbjct: 185 DDTTRQDIVRLLG--LNDP---LIQISSFDRPNIRYMLMEKFKP---LDQLMRYVQEQRG 236

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
              +I+CN++ KV+  + RL     +  + H  ++   R  V   F+    +++++T  +
Sbjct: 237 KSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAF 296

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLR------- 378
             GI+   V  V+++D+P  IE+Y    GR+GR G    A+ F   AD+A LR       
Sbjct: 297 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKP 356

Query: 379 --EIEKFYSIKINPMPANFAE 397
             +++     K+N M A FAE
Sbjct: 357 QGQLQDIERHKLNAMGA-FAE 376


>gi|72995|pir||BVECRQ recQ protein - Escherichia coli >gi|148221
           (M87049) DNA-dependent ATPase, DNA helicase [Escherichia
           coli]
           Length = 610
           
 Score = 79.2 bits (192), Expect = 4e-14
 Identities = 86/381 (22%), Positives = 158/381 (40%), Gaps = 47/381 (12%)

Query: 40  SYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSP 99
           ++G++     Q   I  ++SG+D +    +G GK+  + I              AL+L+ 
Sbjct: 22  TFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQI-------------PALLLNG 68

Query: 100 TRELASQIGQVVKNLGDYMNVNAFA---ITGGKTLKDDLKKMQKHGCQA-----VSGTPG 151
              + S +  ++K+  D +  N  A   +   +T +  L+ M   GC+      +   P 
Sbjct: 69  LTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMT--GCRTGQIRLLYIAPE 126

Query: 152 RVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQ------QIYDIFAKLPKNCQVVVV 205
           R++     + L   N  +L +DEA  +      F+       Q+   F  LP        
Sbjct: 127 RLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATA 186

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
             T  +DI+ +    +NDP   L++        I+  ++   K     D L         
Sbjct: 187 DDTTRQDIVRLLG--LNDP---LIQISSFDRPNIRYMLMEKFKP---LDQLMRYVQEQRG 238

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
              +I+CN++ KV+  +  L     +  + H  ++   R  V   F+    +++++T  +
Sbjct: 239 KSGIIYCNSRAKVEDTAAALQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAF 298

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLR------- 378
             GI+   V  V+++D+P  IE+Y    GR+GR G    A+ F   AD+A LR       
Sbjct: 299 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKP 358

Query: 379 --EIEKFYSIKINPMPANFAE 397
             +++     K+N M A FAE
Sbjct: 359 QGQLQDIERHKLNAMGA-FAE 378


>gi|147559 (M30198) recQ [Escherichia coli]
           Length = 610
           
 Score = 79.2 bits (192), Expect = 4e-14
 Identities = 86/381 (22%), Positives = 158/381 (40%), Gaps = 47/381 (12%)

Query: 40  SYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSP 99
           ++G++     Q   I  ++SG+D +    +G GK+  + I              AL+L+ 
Sbjct: 22  TFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQI-------------PALLLNG 68

Query: 100 TRELASQIGQVVKNLGDYMNVNAFA---ITGGKTLKDDLKKMQKHGCQA-----VSGTPG 151
              + S +  ++K+  D +  N  A   +   +T +  L+ M   GC+      +   P 
Sbjct: 69  LTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMT--GCRTGQIRLLYIAPE 126

Query: 152 RVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQ------QIYDIFAKLPKNCQVVVV 205
           R++     + L   N  +L +DEA  +      F+       Q+   F  LP        
Sbjct: 127 RLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATA 186

Query: 206 SATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTI 265
             T  +DI+ +    +NDP   L++        I+  ++   K     D L         
Sbjct: 187 DDTTRQDIVRLLG--LNDP---LIQISSFDRPNIRYMLMEKFKP---LDQLMRYVQEQRG 238

Query: 266 TQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVW 325
              +I+CN++ KV+  +  L     +  + H  ++   R  V   F+    +++++T  +
Sbjct: 239 KSGIIYCNSRAKVEDTAAALQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAF 298

Query: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLR------- 378
             GI+   V  V+++D+P  IE+Y    GR+GR G    A+ F   AD+A LR       
Sbjct: 299 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKP 358

Query: 379 --EIEKFYSIKINPMPANFAE 397
             +++     K+N M A FAE
Sbjct: 359 QGQLQDIERHKLNAMGA-FAE 378


>gi|3776003|emb|CAA09204| (AJ010465) RNA helicase [Arabidopsis
           thaliana]
           Length = 451
           
 Score = 78.0 bits (189), Expect = 1e-13
 Identities = 74/308 (24%), Positives = 140/308 (45%), Gaps = 59/308 (19%)

Query: 144 QAVSGTPGRVLDMI---KKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLP--- 197
           + V  TPGR+ +++   +K +++  ++   VLDEAD ++    G  +++  I   LP   
Sbjct: 1   EIVVATPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVER--GHFRELQSILDLLPVTD 58

Query: 198 ---------------------KNCQVVVVSAT--MNKDILEVTRKFMN----------DP 224
                                K  Q  V SAT  ++ D  +  ++  +          + 
Sbjct: 59  KPNEGKTQTVKSNDTVLNVPKKKRQTFVFSATIALSSDFRKKLKRGSSKSKQSSSGEVNS 118

Query: 225 VKILVKR----DEISLEGIKQYVVNVDKEEWKFDTLCD-------IYDSLTIT---QCVI 270
           +++L +R    D +++  +    +   K E  F   C+       +Y  L++    + ++
Sbjct: 119 IEVLSERAGMRDNVAIIDLTTTSILAPKIEESF-IKCEEKEKDAYLYYILSVHGQGRTIV 177

Query: 271 FCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGID 330
           FC +   +  +S  L      V ++  +MKQ  R K ++ FR   + +LI+TD+ ARGID
Sbjct: 178 FCTSVTDLRHISGLLKILGLDVCTLFSEMKQRARLKSIDRFRASENGILIATDLVARGID 237

Query: 331 VQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFY---SIK 387
           ++ V  +I+Y LP   E Y+HR GR+ R    G +I  I   + +K   + K +   S+K
Sbjct: 238 IKNVRTIIHYKLPHSAEVYVHRCGRTARAFADGCSIALIEPNETSKFYTLCKSFSMESVK 297

Query: 388 INPMPANF 395
           I P+  ++
Sbjct: 298 IFPLDNSY 305


>gi|1931649 (U95973) DNA helicase isolog [Arabidopsis thaliana]
           Length = 665
           
 Score = 68.7 bits (165), Expect = 6e-11
 Identities = 80/373 (21%), Positives = 156/373 (41%), Gaps = 54/373 (14%)

Query: 50  QSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQ 109
           Q   I   +SG DV     +G GK+ T+ +  L    +       L++SP   L S I  
Sbjct: 129 QREIINATMSGSDVFVLMPTGGGKSLTYQLPALICGGI------TLVISP---LVSLIQD 179

Query: 110 VVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQ-----AVSGTPGRVL--DMIKKQML 162
            + NL    N+ A +++ G    + LK  Q+   +      +  TP +V   D + + + 
Sbjct: 180 QIMNLLQ-ANIPAASLSAGMEWAEQLKIFQELNSEHSKYKLLYVTPEKVAKSDSLLRHLE 238

Query: 163 QTRNVQML---VLDEADELLSETLGFKQQIYDI------FAKLPKNCQVVVVSATMNKDI 213
              +  +L   V+DEA  +      F+     +      F  +P        +A++ +D+
Sbjct: 239 NLNSRGLLARFVIDEAHCVSQWGHDFRPDYQSLGILKQKFPNIPVLALTATATASVKEDV 298

Query: 214 LE--------VTRKFMNDPVK--ILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSL 263
           ++        V R+  N P     +V + +  LE I +++     +E  FD         
Sbjct: 299 VQALGLVNCVVFRQSFNRPNLWYSVVPKTKKCLEDIDKFI-----KENHFD--------- 344

Query: 264 TITQC-VIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLIST 322
              +C +I+C ++   + +S+RL +        HG M+ E+R  +   +      ++ +T
Sbjct: 345 ---ECGIIYCLSRMDCEKVSERLQEFGHKAAFYHGSMEPEQRAFIQTQWSKDEINIICAT 401

Query: 323 DVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEK 382
             +  GI+   V  VI++ LP+ IE Y    GR+GR G++   + +    D  +++ +  
Sbjct: 402 VAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYGYGDYIRVKHMIS 461

Query: 383 FYSIKINPMPANF 395
              +  +PM   +
Sbjct: 462 QGGVDQSPMATGY 474


>gi|3322364 (AE001194) ATP-dependent DNA helicase, putative
           [Treponema pallidum]
           Length = 607
           
 Score = 62.8 bits (150), Expect = 4e-09
 Identities = 37/135 (27%), Positives = 67/135 (49%), Gaps = 3/135 (2%)

Query: 265 ITQCVIFCNTKKKVDWLSQRL--IQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLIST 322
           +   VIFC  + +V+ ++  L    S+  +   H  +++EE++ V   F T  S VL++T
Sbjct: 374 VRPAVIFCARRVQVERVAHHLRTCLSDTQIRFYHAGLQREEKETVERWFHTHDSAVLVTT 433

Query: 323 DVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEK 382
             W  G+D   V  VI+ D P  +E Y+  +GR+GR G +  A    +  D   +  +  
Sbjct: 434 CAWGMGVDKPNVRTVIHVDAPLTVEAYVQEVGRAGRDGMRADAFLLWSPRDARSIETLPH 493

Query: 383 FYSIKINPMPANFAE 397
              ++ + +  +FAE
Sbjct: 494 AQRVRAHVL-RHFAE 507


>gi|2621366 (AE000816) ATP-dependent helicase [Methanobacterium
           thermoautotrophicum]
           Length = 702
           
 Score = 51.9 bits (122), Expect = 7e-06
 Identities = 74/378 (19%), Positives = 162/378 (42%), Gaps = 37/378 (9%)

Query: 42  GFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI-DLRKKDLQALILSPT 100
           G+ +   +Q  A+  I  G+D +  A + +GKT    I +  +I       +  L +SP 
Sbjct: 19  GWRSLRDVQKSALEAIGRGEDTLIVAPTASGKTEAALIPVFNSILSEGLPPVSMLYVSPL 78

Query: 101 RELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRV-LDMIKK 159
           + L + +   ++  G++ N+       G    +  ++  K+    +  TP  + + MI +
Sbjct: 79  KALINDMHSRLELWGNHFNLEVMK-WHGDVPANRKRRFIKNPSDILLITPESLEVMMINR 137

Query: 160 QMLQTR----NVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQV----VVVSATMNK 211
              +      N++ +++DE  + +    G   Q+  + A+L +   V    + +SAT+  
Sbjct: 138 SRAEKERILGNLRYIIVDEIHQFIEADRGV--QLNSLLARLERYTGVRPQRIGLSATVGN 195

Query: 212 DILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQCVIF 271
              E    +M+    ++    E  L+  + + +N  K       L ++    T  + +IF
Sbjct: 196 P--EEVLNWMSPSGAVVRDTAERKLQ-YRIFELNHHK-------LIEVLRRFTGKKVLIF 245

Query: 272 CNTKKKVDWLSQRLIQS-NFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGID 330
             +++  +     + +  +  V   H  + ++ R++    FR+  +  +++T     GID
Sbjct: 246 VPSRRDAEKYYNIIRKCLDVDVFIHHSSINRDSREEAEERFRSVSAAFMVNTSTLELGID 305

Query: 331 VQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGV----------AINFITKADLAKLREI 380
           V  + +VI+   P  +  ++ R GRSGR  R+G+          A+  ++ A LA    +
Sbjct: 306 VGDIDVVIHIRSPTSVNRFLQRTGRSGR--RRGLQRTIIFQEKEALTALSVASLALSGRL 363

Query: 381 EKFYSIKINPMPANFAEL 398
           E    I + P+   F ++
Sbjct: 364 EDL-RIPVRPLDIYFHQI 380


>gi|4008108 (AF107116) putative ATP-dependent RNA helicase Ded1p
           [Candida glabrata]
           Length = 255
           
 Score = 44.9 bits (104), Expect = 0.001
 Identities = 34/122 (27%), Positives = 53/122 (42%), Gaps = 15/122 (12%)

Query: 1   MSFDREEDQXXXXXXXXXXXXXXXXESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISG 60
           ++FD  +D                  S  L   LL  I    F  P+ +Q  ++  +  G
Sbjct: 123 INFDNYDDIPVEASGEDVPEAITEFTSPPLDSLLLENIKLARFTKPTPVQKYSVPIVSKG 182

Query: 61  KDVIAQAQSGTGKTATFTIGLLQAIDL---------------RKKDLQALILSPTRELAS 105
           +D++A AQ+G+GKT  F   +L    L               RK    A++++PTRELA+
Sbjct: 183 RDLMACAQTGSGKTGGFLFPVLSESFLTGPAEKAANDGYSYQRKAFPTAVVMAPTRELAT 242

Query: 106 QI 107
           QI
Sbjct: 243 QI 244


  Database: nr
    Posted date:  Mar 13, 1999  7:20 PM
  Number of letters in database: 110,384,460
  Number of sequences in database:  361,503
  
Lambda     K      H
   0.320    0.136    0.381 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75778410
Number of Sequences: 361503
Number of extensions: 2917609
Number of successful extensions: 9808
Number of sequences better than 1.0e-03: 402
Number of HSP's better than  0.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 8482
Number of HSP's gapped (non-prelim): 461
length of query: 399
length of database: 110384460
effective HSP length: 58
effective length of query: 341
effective length of database: 89417286
effective search space: 30491294526
effective search space used: 30491294526
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 104 (44.9 bits)