1 ARCHAEA 123 seqs
1.1 EURYARCHAEOTA 108 seqs
1.1.1 METHANOCOCCALES 4 seqs
1.1.1.1 MC.JANNASCHII_GROUP 1 seq
1.1.1.1.1 OTU 1 seq
prokMSA_id:26 Methanococcus thermolithotrophicus str. SN-1 DSM 2095
1.1.1.2 MC.MARIPALUDIS_GROUP 3 seqs
1.1.1.2.2 OTU 1 seq
prokMSA_id:37 Methanococcus vannielii str. EY33
1.1.1.2.3 OTU 2 seqs
prokMSA_id:42 Methanococcus maripaludis str. D. NONE
prokMSA_id:43 Methanococcus maripaludis str. LL
1.1.2 METHANOBACTERIALES 15 seqs
1.1.2.1 MT.FERVIDUS_GROUP 1 seq
1.1.2.1.4 OTU 1 seq
prokMSA_id:46 Methanothermus fervidus
1.1.2.2 METHANOBACTERIUM_GROUP 14 seqs
1.1.2.2.1 MB.FORMICICUM_SUBGROUP 11 seqs
1.1.2.2.1.5 OTU 3 seqs
prokMSA_id:78 Methanobacterium ivanovii str. Ivanov OCM 140
prokMSA_id:79 Methanobacterium bryantii str. RiH2
prokMSA_id:80 Methanobacterium bryantii str. BKYH
1.1.2.2.1.6 OTU 4 seqs
prokMSA_id:198 Methanobacterium formicicum DSM 1312
prokMSA_id:214 Methanobacterium sp. str. BRM12
prokMSA_id:27169 clone AC103
prokMSA_id:72084 clone A1 
1.1.2.2.1.7 OTU 2 seqs
prokMSA_id:117 Methanobrevibacter arboriphilicus str. DH1 DSM 1536. NONE
prokMSA_id:24414 Methanobrevibacter arboriphilus 
1.1.2.2.1.8 OTU 1 seq
prokMSA_id:57 Methanosphaera stadtmanae str. MCB-3 DSM 3091
1.1.2.2.1.9 OTU 1 seq
prokMSA_id:177 Methanobacterium bryantii str. M.o.H. DSM 863
1.1.2.2.2 MB.THERMOAUTOTROPHICUM_SUBGROUP 3 seqs
1.1.2.2.2.10 OTU 3 seqs
prokMSA_id:222 Methanobacterium thermoautotrophicum str. CB12 OCM 36
prokMSA_id:229 Methanobacterium thermoautotrophicum str. CB12 ATCC 43574
prokMSA_id:81334 Methanothermobacter wolfeii 
1.1.3 METHANOMICROBACTERIA_AND_RELATIVES 78 seqs
1.1.3.1 METHANOMICROBIALES 31 seqs
1.1.3.1.1 MCU.BOURGENSE_SUBGROUP 24 seqs
1.1.3.1.1.11 OTU 7 seqs
prokMSA_id:257 Methanomicrobium mobile str. BP DSM 1539 . M59142
prokMSA_id:17305 sheep rumen methanogen clone 52 
prokMSA_id:19264 sheep rumen methanogen clone 19 
prokMSA_id:28725 sheep rumen methanogen clone 48 
prokMSA_id:31665 sheep rumen methanogen clone 34 
prokMSA_id:44117 sheep rumen methanogen clone 46 
prokMSA_id:50770 rumen methanogen Hole9 
1.1.3.1.1.12 OTU 1 seq
prokMSA_id:262 Methanogenium cariaci str. JR1 ATCC 35093
1.1.3.1.1.13 OTU 1 seq
prokMSA_id:265 Methanogenium organophilum 
1.1.3.1.1.14 OTU 1 seq
prokMSA_id:295 Methanoculleus marisnigri str. CoCam
1.1.3.1.1.15 OTU 1 seq
prokMSA_id:297 Methanoculleus sp
1.1.3.1.1.16 OTU 1 seq
prokMSA_id:304 Methanoculleus thermophilicus str. TCI DSM 3915
1.1.3.1.1.17 OTU 6 seqs
prokMSA_id:267 Methanoculleus palmolei str. INSLUZ DSM 4273
prokMSA_id:294 Methanoculleus marisnigri str. JR1 ATCC 35101 . M59134
prokMSA_id:26720 Methanoculleus chikugoensis strain:MG62
prokMSA_id:48306 clone GW60-13-24 
prokMSA_id:70145 Methanoculleus submarinus 
prokMSA_id:91502 Methanoculleus thermophilicus 
1.1.3.1.1.18 OTU 1 seq
prokMSA_id:260 Methanoplanus petrolearius SEBR 4847
1.1.3.1.1.19 OTU 5 seqs
prokMSA_id:308 Methanoculleus olentangyi str. RC/ER OCM 52 . AF095270
prokMSA_id:316 Methanoculleus bourgense str. MS2 ATCC 43281 . NONE
prokMSA_id:317 Methanoculleus bourgensis str. MS2. AF095269
prokMSA_id:318 Methanoculleus olentangyi str. RC/ER ATCC 35293 . NONE
prokMSA_id:69300 Methanoculleus oldenburgensis 
1.1.3.1.2 MF.TATIONIS_SUBGROUP 6 seqs
1.1.3.1.2.20 OTU 5 seqs
prokMSA_id:322 Methanofollis tationis DSM 2702 . NONE
prokMSA_id:328 Methanofollis liminatans str. GKZPZ DSM 4140
prokMSA_id:329 Methanofollis liminatans DSM 10196
prokMSA_id:333 Methanofollis tationis DSM 2702 . AF095272
prokMSA_id:334 Methanofollis liminatans str. GKZPZ DSM 4140 . AF095271
1.1.3.1.2.21 OTU 1 seq
prokMSA_id:22804 Methanofollis sp. N2F9704 
1.1.3.1.3 MSP.HUNGATEI_SUBGROUP 1 seq
1.1.3.1.3.22 OTU 1 seq
prokMSA_id:43804 clone AC43
1.1.3.2 METHANOSARCINALES 8 seqs
1.1.3.2.1 METHANOSARCINA_AND_RELATIVES 8 seqs
1.1.3.2.1.23 OTU 1 seq
prokMSA_id:426 Methanococcoides burtonii DSM 6242
1.1.3.2.1.24 OTU 2 seqs
prokMSA_id:362 Methanococcoides methylutens str. TMA-10 DSM 2657 . M59127
prokMSA_id:44725 Methanococcoides sp. strain NaT1
1.1.3.2.1.25 OTU 1 seq
prokMSA_id:361 Methanococcoides euhalobius
1.1.3.2.1.26 OTU 1 seq
prokMSA_id:439 Methanosarcina mazei str. Go1
1.1.3.2.1.27 OTU 3 seqs
prokMSA_id:416 Methanosarcina barkeri str. 227 DSM 1538. M59144
prokMSA_id:490 Methanosarcina barkeri str. MS DSM 800
prokMSA_id:514 Methanosarcina barkeri str. CM1
1.1.3.4 HALOPHILIC_ARCHAEA 39 seqs
1.1.3.4.2 HF.VOLCANII_SUBGROUP 7 seqs
1.1.3.4.2.28 OTU 7 seqs
prokMSA_id:604 Haloferax volcanii str. DS-2 ATCC 29605
prokMSA_id:608 Haloferax D1227 str. D1227
prokMSA_id:92166 Haloferax sp. M5 
prokMSA_id:92267 Haloferax sp. M16 
prokMSA_id:92724 Haloferax sp. M14 
prokMSA_id:93058 Haloferax sp. M7 
prokMSA_id:95310 Haloferax volcanii strain NCIMB 2012 
1.1.3.4.3 HR.SACCHAROVORUM_SUBGROUP 6 seqs
1.1.3.4.3.29 OTU 3 seqs
prokMSA_id:612 Halobacterium sp. str. Ch2 ACM 3911
prokMSA_id:615 Halorubrum distributum str. I-M JCM 9100
prokMSA_id:42756 Halobacterium=halophilic Ch2 Genomic 1469 nt
1.1.3.4.3.30 OTU 3 seqs
prokMSA_id:623 Halorubrum saccharovorum NCIMB 2081 . X53570
prokMSA_id:625 Halorubrum saccharovorum JCM 8865
prokMSA_id:35023 Halobacterium saccharovorum part 3 X53572
1.1.3.4.4 HB.HALOBIUM_SUBGROUP 13 seqs
1.1.3.4.4.31 OTU 13 seqs
prokMSA_id:633 Halobacterium halobium str. R1
prokMSA_id:634 Halobacterium halobium str. R1
prokMSA_id:635 Halobacterium 9R str. 9R
prokMSA_id:637 Halobacterium halobium
prokMSA_id:23901 Halobacterium sp. NCIMB 741 
prokMSA_id:32933 Halobacterium sp. NRC-1 section 159 of 170 of the complete g
prokMSA_id:40871 Halobacterium sp. NCIMB 733 
prokMSA_id:47635 Halobacterium sp. JP-6 
prokMSA_id:48009 Halobacterium sp. NRC-1 complete genome
prokMSA_id:50435 Halobacterium salinarum 
prokMSA_id:54099 Halobacterium sp. NRC-1 complete genome
prokMSA_id:63193 Halobacterium salinarum strain DSM 3754T
prokMSA_id:68649 Halobacterium sp. JCM 9447 
1.1.3.4.6 NTC.AMYLOLYTICUS_SUBGROUP 1 seq
1.1.3.4.6.32 OTU 1 seq
prokMSA_id:668 Natrialba magadii NCIMB 2190
1.1.3.4.7 HC.MORRHUAE_SUBGROUP 8 seqs
1.1.3.4.7.33 OTU 8 seqs
prokMSA_id:686 Halococcus morrhuae NRC 16008
prokMSA_id:687 Halococcus morrhuae
prokMSA_id:688 Halorubrum trapanicum JCM 8979
prokMSA_id:689 Halococcus morrhuae str. LD.3.1 C.B. van Niel ATCC 17082
prokMSA_id:27023 Halobacterium sp. NCIMB 765 rrnB operon
prokMSA_id:38435 Halobacterium sp. NCIMB 765 operon
prokMSA_id:39472 Halococcus dombrowskii strain H4
prokMSA_id:83880 Halococcus qingdaogense complete 
1.1.3.4.8 HAR.VALLISMORTIS_SUBGROUP 4 seqs
1.1.3.4.8.34 OTU 4 seqs
prokMSA_id:697 Haloarcula japonica str. TR-1 JCM 7785
prokMSA_id:702 Haloarcula aidinensis str. B-2
prokMSA_id:71110 Haloarcula sinaiiensis complete 
prokMSA_id:87898 Haloarcula altuensis 
1.1.4 THERMOCOCCALES 10 seqs
1.1.4.3 PC.FURIOSUS_SUBGROUP 1 seq
1.1.4.3.35 OTU 1 seq
prokMSA_id:768 Thermococcus chitonophagus str. GC74 DSM 10152
1.1.4.4 TC.CELER_SUBGROUP 9 seqs
1.1.4.4.36 OTU 9 seqs
prokMSA_id:777 Thermococcus hydrothermalis str. AL662
prokMSA_id:784 Thermococcus celer str. VU 13 DSM 2476
prokMSA_id:789 Thermococcus barossii
prokMSA_id:800 VC2.1 Arc5 complete 
prokMSA_id:803 VC2.1 Arc35 complete 
prokMSA_id:54583 Thermococcus sp. MZ12 ; internal transcribed spacer complete
prokMSA_id:55014 Thermococcus sp. MZ6 ; internal transcribed spacer complete 
prokMSA_id:89817 Thermococcus sp. TS2 
prokMSA_id:90070 Thermococcus sp. TS1 
1.1.5 METHANOPYRALES 1 seq
1.1.5.37 OTU 1 seq
prokMSA_id:822 Methanopyrus kandleri str. av19 DSM 6324
1.2 CRENARCHAEOTA 15 seqs
1.2.1 THERMOPHILIC_CRENARCHAEOTA 15 seqs
1.2.1.3 TMF.PENDENS_SUBGROUP 1 seq
1.2.1.3.38 OTU 1 seq
prokMSA_id:826 Thermofilum pendens str. Hvv3 DSM 2475
1.2.1.4 PYB.ISLANDICUM_SUBGROUP 11 seqs
1.2.1.4.39 OTU 10 seqs
prokMSA_id:868 Pyrobaculum islandicum str. geo3. L07511
prokMSA_id:869 Pyrobaculum aerophilum str. IM2 DSM 7523
prokMSA_id:870 Pyrobaculum neutrophilum str. NZ1
prokMSA_id:873 Thermoproteus neutrophilus JCM 9278
prokMSA_id:20435 Pyrobaculum arsenaticum strain PZ6
prokMSA_id:34186 Pyrobaculum organotrophum strain:JCM 9190
prokMSA_id:44220 Pyrobaculum oguniense 
prokMSA_id:54372 Pyrobaculum aerophilum strain IM2 section 98 of 201 of the c
prokMSA_id:64505 Pyrobaculum aerophilum complete genome
prokMSA_id:78804 Pyrobaculum calidifontis complete 
1.2.1.4.40 OTU 1 seq
prokMSA_id:872 Thermoproteus tenax
1.2.1.5 PYRODICTIALES 1 seq
1.2.1.5.1 PYR.OCCULTUM_SUBGROUP 1 seq
1.2.1.5.1.41 OTU 1 seq
prokMSA_id:879 Pyrodictium occultum str. PL-19 DSM 2709
1.2.1.6 SULFOLOBUS_SUBGROUP_I 2 seqs
1.2.1.6.1 SUL.SOLFATARICUS_SUBGROUP 2 seqs
1.2.1.6.1.42 OTU 2 seqs
prokMSA_id:938 Sulfolobus solfataricus str. Ron 12/III
prokMSA_id:940 Sulfolobus shibatae str. B12 DSM 5389
2 BACTERIA 8732 seqs
2.1 THERMOPHILIC_OXYGEN_REDUCERS 16 seqs
2.1.43 OTU 12 seqs
prokMSA_id:1199 Calderobacterium hydrogenophilum str. Z-829 . Z30242
prokMSA_id:1207 clone OPS132. AF027104
prokMSA_id:1209 Hydrogenobacter thermophilus str. T3. Z30189
prokMSA_id:1210 Hydrogenobacter subterranea str. HGP1
prokMSA_id:16683 Hydrogenobacter sp. MV4L2B strain MV4L2B AJ320214
prokMSA_id:18011 Hydrogenobacter sp. PA14 strain PA16
prokMSA_id:25858 Aquificales str. SS5H1 
prokMSA_id:33986 Hydrogenobacter sp. BB4L1B strain BB4L1B
prokMSA_id:60606 clone R57 
prokMSA_id:60621 clone Y04 
prokMSA_id:60624 clone Sed01 AF407673
prokMSA_id:67859 Bacillus sp. clone DGG36 
2.1.44 OTU 1 seq
prokMSA_id:32822 Aquifex sp. Gri14L3B strain Gri14L3B
2.1.45 OTU 1 seq
prokMSA_id:51871 Aquificales pIce1 
2.1.46 OTU 1 seq
prokMSA_id:1187 Aquifex pyrophilus 
2.1.47 OTU 1 seq
prokMSA_id:1211 str. EM 17
2.2 THERMOTOGALES 12 seqs
2.2.3 FERVIDOBACTERIUM_GROUP 6 seqs
2.2.3.48 OTU 1 seq
prokMSA_id:999992 SYN Fer.nodosm
2.2.3.49 OTU 5 seqs
prokMSA_id:1221 Fervidobacterium islandicum str. H-21 DSM 5733 . M59176
prokMSA_id:1224 clone OPS196
prokMSA_id:1225 clone OPS69B
prokMSA_id:18702 Fervidobacterium islandicum strain AW-1 
prokMSA_id:32030 Thermotogales sp. SRI-251 
2.2.5 THERMOTOGA_GROUP 2 seqs
2.2.5.50 OTU 2 seqs
prokMSA_id:1232 Thermotoga thermarum str. LA3. NONE
prokMSA_id:38910 Thermotoga thermarum 
2.2.6 TT.MARITIMA_GROUP 3 seqs
2.2.6.51 OTU 3 seqs
prokMSA_id:24284 Thermotoga maritima strain FJSS3-B.1 AJ401021
prokMSA_id:40929 Thermotoga sp. RQ7 strain RQ7 AJ401023
prokMSA_id:41353 Thermotoga neapolitana 
2.2.7 ENVIRONMENTAL_CLONE_OPB7_GROUP 1 seq
2.2.7.52 OTU 1 seq
prokMSA_id:1241 str. EM 3
2.4 STRAIN.EM_19 2 seqs
2.4.53 OTU 2 seqs
prokMSA_id:1251 str. EM 19
prokMSA_id:16693 clone BH81 complete 
2.7 GREEN_NON-SULFUR_BACTERIA_AND_RELATIVES 69 seqs
2.7.1 CHLOROFLEXUS_SUBDIVISION 17 seqs
2.7.1.2 ENVIRONMENTAL_CLONE_T78_GROUP 17 seqs
2.7.1.2.54 OTU 6 seqs
prokMSA_id:2741 clone WCHB1-80
prokMSA_id:2742 clone WCHB1-44
prokMSA_id:2745 clone SJA-108. AJ009483
prokMSA_id:65482 SHD-197 
prokMSA_id:66091 green nonsulfur clone:KB40
prokMSA_id:91629 clone SR_FBR_L52 
2.7.1.2.55 OTU 11 seqs
prokMSA_id:1873 str. Lincoln Park 3. AF157057
prokMSA_id:15703 Anaeroplasma abactoclasticum str. 6-1 ATCC 27879 . M25050
prokMSA_id:29228 clone CRP99-27 
prokMSA_id:51154 Crater Lake CL500-11 
prokMSA_id:88892 Lactobacillus kefirgranum strain CECT 5919T
prokMSA_id:95575 Lactobacillus kefiranofaciens subsp. kefiranofaciens strain 
prokMSA_id:96399 Lactobacillus kefiranofaciens subsp. kefiranofaciens strain 
prokMSA_id:96446 Lactobacillus kefiranofaciens subsp. kefirgranum strain LMG 
prokMSA_id:96876 Lactobacillus kefiranofaciens subsp. kefirgranum strain R-12
prokMSA_id:97970 actinobacterium clone S11
prokMSA_id:98433 2 from Patent WO03053158
2.7.2 DEINOCOCCUS-THERMUS_SUBDIVISION 52 seqs
2.7.2.1 THERMUS_GROUP 47 seqs
2.7.2.1.1 T.THERMOPHILUS_SUBGROUP 36 seqs
2.7.2.1.1.56 OTU 21 seqs
prokMSA_id:1360 Thermus filiformis
prokMSA_id:1383 Thermus sp. str. W28 A.1
prokMSA_id:1384 Thermus sp. str. Tok8 A.1
prokMSA_id:1385 Thermus sp. str. Tok20 A.1
prokMSA_id:1388 Thermus sp. str. Tok3 A.1
prokMSA_id:1392 Thermus sp. str. Rt4 1A. L09669
prokMSA_id:1393 Thermus sp. str. OK6 A.1
prokMSA_id:1394 Thermus sp. str. T351
prokMSA_id:38282 Thermus sp. clone 
prokMSA_id:41572 Thermus rehai 
prokMSA_id:60604 clone R75 AF407694
prokMSA_id:60605 clone R58 
prokMSA_id:60615 clone Y71 
prokMSA_id:60622 clone Y03 
prokMSA_id:63588 Thermus sp. RH-1514 
prokMSA_id:63589 Thermus sp. RH-1214 
prokMSA_id:63592 Thermus sp. RH-914 
prokMSA_id:67864 Thermus sp. clone DFQ34 
prokMSA_id:67865 Thermus sp. clone DFQ28 
prokMSA_id:67866 Thermus sp. clone DFQ37 
prokMSA_id:67868 Thermus sp. clone DFQ6 
2.7.2.1.1.57 OTU 1 seq
prokMSA_id:60620 clone Y10 
2.7.2.1.1.58 OTU 14 seqs
prokMSA_id:1317 Thermus sp. str. YSPID A.1
prokMSA_id:1318 clone OPB19
prokMSA_id:1319 clone OPB31. AF027020
prokMSA_id:1322 clone OPS25. AF027024
prokMSA_id:1323 clone OPT60. AF027025
prokMSA_id:1325 Thermus sp. str. ZHGIB A.4. L10071
prokMSA_id:1345 Thermus aquaticus str. YT-1
prokMSA_id:1348 Thermus sp. str. ZHGI A.1
prokMSA_id:16358 AT425_EubC9 
prokMSA_id:17962 Thermus sp. SRI-248 
prokMSA_id:24092 Thermus kawarayuensis 
prokMSA_id:29817 Thermus/Deinococcus group clone SM1A01 AF445644
prokMSA_id:30085 Thermus brockianus strain 15038T
prokMSA_id:87174 Deinococci clone FL08D03 
2.7.2.1.3 MEI.RUBER_SUBGROUP 11 seqs
2.7.2.1.3.59 OTU 11 seqs
prokMSA_id:1400 Meiothermus ruber
prokMSA_id:1401 Meiothermus ruber str. 16105
prokMSA_id:1402 Meiothermus ruber str. 16106
prokMSA_id:17405 Meiothermus rosaceus 
prokMSA_id:20802 Meiothermus taiwanensis strain WR-220 
prokMSA_id:26209 Meiothermus taiwanensis strain WR-30T 
prokMSA_id:56011 Thermus sp. R55-10 
prokMSA_id:56267 clone G21 
prokMSA_id:60593 clone G34 
prokMSA_id:60612 clone R03 
prokMSA_id:69769 Meiothermus sp. R55-11 AF407750
2.7.2.2 DEINOCOCCUS_GROUP 5 seqs
2.7.2.2.60 OTU 3 seqs
prokMSA_id:1417 Deinococcus radiodurans DSM 20539
prokMSA_id:25349 Deinococcus radiodurans DC 
prokMSA_id:55007 Deinococcus radiodurans chromosome 1 complete 
2.7.2.2.61 OTU 2 seqs
prokMSA_id:1418 Deinococcus radiodurans ATCC 35073
prokMSA_id:94705 Deinococcus sp. clone S15B-MN92 AJ583206
2.9 LEPTOSPIRILLUM-NITROSPIRA 4 seqs
2.9.3 LEPTOSPIRILLUM_GROUP 2 seqs
2.9.3.1 LPP.FERROOXIDANS_SUBGROUP 2 seqs
2.9.3.1.62 OTU 2 seqs
prokMSA_id:1500 Leptospirillum sp. DSM 2391. M79383
prokMSA_id:38108 Leptospirillum sp. strain DSM 2391
2.9.4 TDV.YELLOWSTONII_GROUP 2 seqs
2.9.4.63 OTU 1 seq
prokMSA_id:52153 clone T26-8 
2.9.4.64 OTU 1 seq
prokMSA_id:1513 Magnetobacterium bavaricum
2.10 PROSTHECOBACTER_GROUP 2 seqs
2.10.3 ENVIRONMENTAL_CLONE_OPB35_SUBGROUP 2 seqs
2.10.3.65 OTU 2 seqs
prokMSA_id:1572 clone OPB35
prokMSA_id:98706 clone EA1G3 
2.13 NITROSPINA_SUBDIVISION 3 seqs
2.13.4 ENVIRONMENTAL_CLONE_OPB5_GROUP 2 seqs
2.13.4.66 OTU 1 seq
prokMSA_id:95059 clone S15B-MN72
2.13.4.67 OTU 1 seq
prokMSA_id:1705 clone WCHA1-39
2.13.9 ENVIRONMENTAL_CLONE_S027_GROUP 1 seq
2.13.9.68 OTU 1 seq
prokMSA_id:1743 clone UC37f
2.15 FLEXIBACTER-CYTOPHAGA-BACTEROIDES 503 seqs
2.15.1 BACTEROIDES_AND_CYTOPHAGA 397 seqs
2.15.1.2 BACTEROIDES_GROUP 141 seqs
2.15.1.2.1 RIK.MICROFUSUS_SUBGROUP 1 seq
2.15.1.2.1.69 OTU 1 seq
prokMSA_id:90426 rumen clone JRCH33 
2.15.1.2.4 CY.FERMENTANS_SUBGROUP 15 seqs
2.15.1.2.4.70 OTU 1 seq
prokMSA_id:38359 clone CR98-24-27 
2.15.1.2.4.71 OTU 1 seq
prokMSA_id:16567 SHA-25 
2.15.1.2.4.72 OTU 2 seqs
prokMSA_id:20574 CFB group MERTZ_0CM_331 
prokMSA_id:32224 CFB group MERTZ_2CM_35 
2.15.1.2.4.73 OTU 3 seqs
prokMSA_id:1896 clone WCHB1-53
prokMSA_id:1897 clone WCHA1-14
prokMSA_id:80197 clone KD3-17 
2.15.1.2.4.74 OTU 2 seqs
prokMSA_id:17582 CFB group MERTZ_21CM_344 
prokMSA_id:27443 clone Car44rc 
2.15.1.2.4.75 OTU 1 seq
prokMSA_id:41113 CFB group MERTZ_2CM_347 
2.15.1.2.4.76 OTU 2 seqs
prokMSA_id:26684 AT425_EubA4 
prokMSA_id:81494 clone KD2-88 
2.15.1.2.4.77 OTU 2 seqs
prokMSA_id:55494 clone IA-16 AJ488070
prokMSA_id:75791 Bacteroidetes Ko710 
2.15.1.2.4.78 OTU 1 seq
prokMSA_id:48262 CFB group MERTZ_21CM_3 
2.15.1.2.7 PPM.MACACAE_SUBGROUP 51 seqs
2.15.1.2.7.79 OTU 1 seq
prokMSA_id:81083 Bacteroides merdae 
2.15.1.2.7.80 OTU 1 seq
prokMSA_id:46885 Bacteroides-like sp. oral clone AU126 
2.15.1.2.7.81 OTU 1 seq
prokMSA_id:66177 clone IIB-29
2.15.1.2.7.82 OTU 3 seqs
prokMSA_id:46168 Bacteroidetes clone BIui18
prokMSA_id:74492 Bacteroidetes clone BIci17
prokMSA_id:91816 Dysgonomonas shahii strain CCUG 43457
2.15.1.2.7.83 OTU 1 seq
prokMSA_id:47720 strain MR36D
2.15.1.2.7.84 OTU 1 seq
prokMSA_id:1928 Bacteroides sp. str. sp4
2.15.1.2.7.85 OTU 13 seqs
prokMSA_id:1942 clone RFN47
prokMSA_id:1967 clone RF16. AF001748
prokMSA_id:1968 clone RFN12. AB009171
prokMSA_id:1970 clone RFN43
prokMSA_id:1971 clone RFN73. AB009221
prokMSA_id:1972 clone RFN86
prokMSA_id:35289 Cytophagales clone CD4A9 
prokMSA_id:43796 Cytophagales clone CD4A4 
prokMSA_id:56220 Rumen YS3 
prokMSA_id:56307 CFB group clone CD4A2 
prokMSA_id:85200 rumen clone BF3 
prokMSA_id:90061 rumen clone JRCI27 
prokMSA_id:90380 rumen clone JRCI18 
2.15.1.2.7.86 OTU 1 seq
prokMSA_id:1975 clone vadinHA54
2.15.1.2.7.87 OTU 1 seq
prokMSA_id:1976 clone vadinHA28
2.15.1.2.7.88 OTU 1 seq
prokMSA_id:88774 rumen clone JRCI12 
2.15.1.2.7.89 OTU 1 seq
prokMSA_id:90370 rumen clone JRCI26 
2.15.1.2.7.90 OTU 20 seqs
prokMSA_id:1948 Porphyromonas gingivalis ATCC 33277 . L16492
prokMSA_id:17881 Porphyromonas gingivalis 
prokMSA_id:26186 Porphyromonas gulae strain Manga 1.41 
prokMSA_id:32807 Porphyromonas gulae strain chien 4.2 
prokMSA_id:35745 Porphyromonas gingivalis strain:FDC 381
prokMSA_id:35989 Porphyromonas gulae 
prokMSA_id:39994 Porphyromonas gulae strain ours 3.1 
prokMSA_id:42871 Porphyromonas gulae 
prokMSA_id:46900 Porphyromonas gingivalis strain:A7A1-28
prokMSA_id:47786 Porphyromonas gulae strain B 243 
prokMSA_id:49110 Porphyromonas gingivalis strain:W83
prokMSA_id:49606 Porphyromonas gingivalis 
prokMSA_id:53253 Porphyromonas gingivalis strain:ATCC33277
prokMSA_id:71638 Porphyromonas gulae strain chat 3.1 AF285871
prokMSA_id:84660 Porphyromonas sp. oral clone P4GB_100 P2 
prokMSA_id:93277 Porphyromonas gingivalis W83 section 8 of 8 of the complete 
prokMSA_id:93513 Porphyromonas gingivalis W83 complete genome
prokMSA_id:93631 Porphyromonas gingivalis W83 section 1 of 8 of the complete 
prokMSA_id:93824 Porphyromonas gingivalis W83 section 5 of 8 of the complete 
prokMSA_id:93948 Porphyromonas gingivalis W83 section 6 of 8 of the complete 
2.15.1.2.7.91 OTU 4 seqs
prokMSA_id:28004 Porphyromonas sp. oral clone F016 AY005069
prokMSA_id:29149 Porphyromonas sp. oral clone AJ002 
prokMSA_id:84092 Porphyromonas endodontalis ATCC 35406 
prokMSA_id:84799 Porphyromonas sp. oral clone P2PB_52 P1 AY207054
2.15.1.2.7.92 OTU 2 seqs
prokMSA_id:1933 Porphyromonas circumdentaria NCTC 12469 . L26102
prokMSA_id:63166 Porphyromonas canis 
2.15.1.2.8 BAC.FRAGILIS_SUBGROUP 34 seqs
2.15.1.2.8.100 OTU 1 seq
prokMSA_id:93000 Prevotella sp. oral clone ID019 
2.15.1.2.8.101 OTU 4 seqs
prokMSA_id:2005 Bacteroides fragilis str. Bfr901
prokMSA_id:2006 Bacteroides fragilis str. Bfr920. X83946
prokMSA_id:43091 adhufec303 
prokMSA_id:73683 Bacteroides sp. 253c AY082449
2.15.1.2.8.102 OTU 1 seq
prokMSA_id:28056 clone p-194-o5 
2.15.1.2.8.103 OTU 1 seq
prokMSA_id:25165 clone HuCA34
2.15.1.2.8.104 OTU 1 seq
prokMSA_id:24578 isolate HuCC30
2.15.1.2.8.105 OTU 2 seqs
prokMSA_id:2041 Bacteroides sp. U58214
prokMSA_id:88496 clone YRCB34 
2.15.1.2.8.106 OTU 1 seq
prokMSA_id:2016 Bacteroides fragilis str. TAL3636
2.15.1.2.8.107 OTU 1 seq
prokMSA_id:2038 Bacteroides sp
2.15.1.2.8.93 OTU 1 seq
prokMSA_id:2037 clone RFN46
2.15.1.2.8.94 OTU 1 seq
prokMSA_id:18983 clone F2
2.15.1.2.8.95 OTU 1 seq
prokMSA_id:50289 equine intestinal sp. PW13 clone PW13
2.15.1.2.8.96 OTU 7 seqs
prokMSA_id:2020 Bacteroides uniformis ATCC 8492 . L16486
prokMSA_id:2021 Bacteroides uniformis
prokMSA_id:2022 Bacteroides uniformis
prokMSA_id:2023 Bacteroides uniformis. U58254
prokMSA_id:2024 Bacteroides AR20 str. AR20
prokMSA_id:60914 84634 
prokMSA_id:71193 clone S2A AF481813
2.15.1.2.8.97 OTU 2 seqs
prokMSA_id:2040 Bacteroides sp
prokMSA_id:2042 Bacteroides sp
2.15.1.2.8.98 OTU 2 seqs
prokMSA_id:34809 rumen 4C0d-8 
prokMSA_id:47181 clone p-1005-a5 
2.15.1.2.8.99 VARIOUS 8 seqs
2.15.1.2.10 PRV.BRYANTII_SUBGROUP 1 seq
2.15.1.2.10.108 OTU 1 seq
prokMSA_id:30061 equine intestinal sp. PW14 clone PW14
2.15.1.2.11 PRV.RUMINICOLA_SUBGROUP 1 seq
2.15.1.2.11.109 OTU 1 seq
prokMSA_id:2135 clone JW17
2.15.1.2.12 PRV.BUCCAE_SUBGROUP 10 seqs
2.15.1.2.12.110 OTU 7 seqs
prokMSA_id:2172 clone RC17
prokMSA_id:2173 Prevotella buccae str. 938.11 ATCC 33690. L16478
prokMSA_id:2178 Prevotella buccae str. VPI D3A-6 ATCC 33574 . L16477
prokMSA_id:16549 clone p-1031-a5 
prokMSA_id:24907 clone p-2190-s959-3 
prokMSA_id:39371 ckncm293-c5b1 
prokMSA_id:56320 Prevotella sp. E9_42 E4 oral isolate 
2.15.1.2.12.111 OTU 1 seq
prokMSA_id:92510 Prevotella sp. oral clone FL019 
2.15.1.2.12.112 OTU 1 seq
prokMSA_id:76393 Prevotella sp. RS2 
2.15.1.2.12.113 OTU 1 seq
prokMSA_id:89232 Prevotella oralis 
2.15.1.2.13 PRV.NIGRESCENS_SUBGROUP 28 seqs
2.15.1.2.13.114 OTU 3 seqs
prokMSA_id:2193 Prevotella disiens ATCC 29426 . L16483
prokMSA_id:2196 Prevotella corporis ATCC 33547 . L16465
prokMSA_id:63123 clone MB-A2-107 
2.15.1.2.13.115 OTU 8 seqs
prokMSA_id:2048 Prevotella bryantii str. B14 DSM 11371
prokMSA_id:2049 clone RF23
prokMSA_id:2050 clone 12-4
prokMSA_id:23685 rumen 5C3d-4 
prokMSA_id:39885 rumen 3C3d-16 
prokMSA_id:52763 rumen 5C3d-8 
prokMSA_id:68338 Prevotella sp. E7_56 E3 oral isolate 
prokMSA_id:71710 clone p-993-s962-5 AF371898
2.15.1.2.13.116 OTU 6 seqs
prokMSA_id:2228 Prevotella denticola ATCC 33185. L16466
prokMSA_id:22951 Prevotella sp. oral clone AU069 
prokMSA_id:55854 Prevotella sp. E7_34 E1 oral isolate 
prokMSA_id:60257 Prevotella sp. P2A_FAAD4 strain P2A_FAAD4 
prokMSA_id:71907 Prevotella sp. oral clone FX046 AY134905
prokMSA_id:88701 Prevotella denticola AY323524
2.15.1.2.13.117 OTU 1 seq
prokMSA_id:18221 rumen 4C3d-6 
2.15.1.2.13.118 OTU 1 seq
prokMSA_id:2216 Prevotella RZ str. RZ
2.15.1.2.13.119 OTU 1 seq
prokMSA_id:92223 Prevotella sp. oral clone GI030 
2.15.1.2.13.120 OTU 4 seqs
prokMSA_id:2176 Prevotella dentalis str. ES2645 DSM 3688 . X81876
prokMSA_id:2188 Prevotella veroralis ATCC 33779 . L16473
prokMSA_id:2200 Prevotella albensis str. M384 DSM 11370
prokMSA_id:91187 Prevotella genomosp. P6 clone P4PB_24 
2.15.1.2.13.121 OTU 4 seqs
prokMSA_id:2183 Prevotella oris ATCC 33573 . L16474
prokMSA_id:2224 str. PUS3.3
prokMSA_id:45107 Prevotella sp. oral clone F045 AY005056
prokMSA_id:73517 Prevotella sp. oral clone BU035 AF385564
2.15.1.3 CYTOPHAGA_GROUP_I 251 seqs
2.15.1.3.2 MSC.AGGREGANS_SUBGROUP 2 seqs
2.15.1.3.2.122 OTU 1 seq
prokMSA_id:58645 Flexibacter aggregans subsp. catalaticus strain:IFO 15977
2.15.1.3.2.123 OTU 1 seq
prokMSA_id:81782 clone KD3-110 
2.15.1.3.3 BLT.SP_SUBGROUP 1 seq
2.15.1.3.3.124 OTU 1 seq
prokMSA_id:2238 Blattabacterium sp
2.15.1.3.4 EMB.BREVIS_SUBGROUP 19 seqs
2.15.1.3.4.125 OTU 1 seq
prokMSA_id:86113 Bacteroidetes clone 1G12 
2.15.1.3.4.126 OTU 4 seqs
prokMSA_id:2477 str. Koll-22. AJ224942
prokMSA_id:22035 GR-WP33-44 
prokMSA_id:46544 clone CRP99-73 
prokMSA_id:80707 CFB group clone ML310M-46 
2.15.1.3.4.127 OTU 14 seqs
prokMSA_id:2247 Ornithobacterium rhinotracheale str. D95-36425
prokMSA_id:2248 Ornithobacterium rhinotracheale LMG 9086
prokMSA_id:2249 Ornithobacterium rhinotracheale LMG 11553
prokMSA_id:2250 Ornithobacterium rhinotracheale LMG 15870
prokMSA_id:2251 Ornithobacterium rhinotracheale LMG 11554
prokMSA_id:2427 Cytophaga sp. str. J18-M01
prokMSA_id:2428 Cytophaga sp. str. AA8-2
prokMSA_id:2429 Cytophaga sp. str. AA8-3
prokMSA_id:23950 CFB group A0653 AF236016
prokMSA_id:30792 clone CR99-2-27 
prokMSA_id:59360 clone HP1A39 
prokMSA_id:70738 Marine ALUS253_6 AF359551
prokMSA_id:77851 Cytophaga sp. TUT1013 
prokMSA_id:79767 Kordia algicida 
2.15.1.3.10 F.FLEVENSE_SUBGROUP 8 seqs
2.15.1.3.10.128 OTU 3 seqs
prokMSA_id:2371 Coenonia anatina LMG 14382 . Y17612
prokMSA_id:31284 Coenonia anatina 
prokMSA_id:39294 Cytophagales clone 15 
2.15.1.3.10.129 OTU 4 seqs
prokMSA_id:2254 Empedobacter brevis M59052
prokMSA_id:41958 clone CRP99-42 
prokMSA_id:44265 FukuN36 
prokMSA_id:62957 clone LPU28 
2.15.1.3.10.130 OTU 1 seq
prokMSA_id:59796 clone OB3_227 
2.15.1.3.11 FLX.MARITIMUS_SUBGROUP 4 seqs
2.15.1.3.11.131 OTU 2 seqs
prokMSA_id:92204 Flavobacteriaceae G121102s2_3 
prokMSA_id:92882 Flavobacteriaceae G121102s2_2 AY353819
2.15.1.3.11.132 OTU 2 seqs
prokMSA_id:36375 Polaribacter sp. clone MERTZ_0CM_405 
prokMSA_id:43261 SIC.917 
2.15.1.3.12 CAP.OCHRACEA_SUBGROUP 10 seqs
2.15.1.3.12.133 OTU 9 seqs
prokMSA_id:2370 Capnocytophaga ochracea str. 25 ATCC 33596
prokMSA_id:2373 Capnocytophaga sputigena ATCC 33612
prokMSA_id:2374 Capnocytophaga sputigena str. 897 CIP 100
prokMSA_id:2382 Capnocytophaga gingivalis ATCC 33624
prokMSA_id:23229 Capnocytophaga sp. oral clone BU084 
prokMSA_id:33071 Selenomonas sp. clone DS051 
prokMSA_id:70542 Capnocytophaga sp. clone DS022 AF366270
prokMSA_id:71957 Capnocytophaga sp. oral clone DZ074 AF385494
prokMSA_id:73111 Capnocytophaga sp. oral clone BR085 AY134894
2.15.1.3.12.134 OTU 1 seq
prokMSA_id:2392 Capnocytophaga canimorsus str. CalHlthDept 2340-2-61 ATCC 35
2.15.1.3.13 CY.ULIGINOSA_SUBGROUP 30 seqs
2.15.1.3.13.135 OTU 7 seqs
prokMSA_id:20824 Tenacibaculum ovolyticus strain:IFO15992
prokMSA_id:24142 Tenacibaculum ovolyticus strain:IFO15993
prokMSA_id:25568 CFB group MERTZ_0CM_112 
prokMSA_id:28646 CFB group MERTZ_0CM_248 
prokMSA_id:31362 Tenacibaculum sp. clone MERTZ_0CM_42 
prokMSA_id:37069 Tenacibaculum ovolyticus strain:IAM14318
prokMSA_id:92931 Flavobacteriaceae G121102s1_3 
2.15.1.3.13.136 OTU 1 seq
prokMSA_id:45309 Marine ATAM173a_6 
2.15.1.3.13.137 OTU 1 seq
prokMSA_id:59803 clone BB2_231 
2.15.1.3.13.138 OTU 1 seq
prokMSA_id:59806 clone BB2_71 
2.15.1.3.13.139 OTU 1 seq
prokMSA_id:29027 CFB group MERTZ_0CM_403 
2.15.1.3.13.140 OTU 1 seq
prokMSA_id:78926 Flexibacter sp. 2216.15.5 
2.15.1.3.13.141 OTU 1 seq
prokMSA_id:85064 Bacteroidetes KMM 3949 
2.15.1.3.13.142 OTU 1 seq
prokMSA_id:81144 Bacteroidetes ANT9105 
2.15.1.3.13.143 OTU 1 seq
prokMSA_id:80944 Arctic sea ice ARK10223 
2.15.1.3.13.144 OTU 1 seq
prokMSA_id:20776 Bacteroidetes clone BIvi22
2.15.1.3.13.145 OTU 1 seq
prokMSA_id:96608 Robiginitalea biformata strain HTCC2514 
2.15.1.3.13.146 OTU 1 seq
prokMSA_id:67189 Cellulophaga sp. MM#3 
2.15.1.3.13.147 OTU 2 seqs
prokMSA_id:39004 Arenibacter latericius KMM 426T 
prokMSA_id:84611 Arenibacter sp. KMM 3941 AY271622
2.15.1.3.13.148 OTU 2 seqs
prokMSA_id:2401 Cytophaga fucicola str. NN015860 strain
prokMSA_id:31829 Cellulophaga lytica strain ACEM21 
2.15.1.3.13.149 OTU 8 seqs
prokMSA_id:17681 clone KS27 
prokMSA_id:24477 clone KS1 
prokMSA_id:26719 SIC.B8012 
prokMSA_id:40211 CFB group FL13A12 
prokMSA_id:49040 clone KS17 
prokMSA_id:51877 clone KS16 
prokMSA_id:75119 Croceibacter atlanticus strain HTCC2559T 
prokMSA_id:83353 Marine arctic deep-sea FI7 
2.15.1.3.14 PSF.TORQUIS_SUBGROUP 107 seqs
2.15.1.3.14.150 OTU 101 seqs
prokMSA_id:2284 Myroides odoratus M58777
prokMSA_id:2285 str. SS2
prokMSA_id:2286 str. SS1
prokMSA_id:2289 Flavobacterium johnsoniae M59053
prokMSA_id:2294 Flavobacterium columnare M58781
prokMSA_id:2296 clone K20-54
prokMSA_id:2297 Flavobacterium BURTON-22
prokMSA_id:2310 Flavobacterium columnare str. IAM 14301. AB010951
prokMSA_id:2311 Flavobacterium columnare str. FK 401. AB010952
prokMSA_id:2312 Flavobacterium columnare str. EK-28 IAM 14820. AB016515
prokMSA_id:2319 Flavobacterium hibernum ATCC 51468 . L39067
prokMSA_id:2321 Flavobacterium sp. str. IC001. U85889
prokMSA_id:2323 Cytophaga sp. str. 0092
prokMSA_id:2325 Flavobacterium columnare str. PH-97028 IAM 14821
prokMSA_id:2330 Flexibacter aurantiacus str. Lewin DWO ATCC 23107 . M62792
prokMSA_id:2334 Flavobacterium johnsoniae M59051
prokMSA_id:17527 Flavobacterium omnivorum As1.2747 
prokMSA_id:20785 Flavobacterium sp. Sun4 
prokMSA_id:22147 clone PDS7 
prokMSA_id:22740 clone CR99-7-06 
prokMSA_id:25756 clone CR99-2-14 
prokMSA_id:27830 Acanthamoeba sp. KHLA1 AF366582
prokMSA_id:28957 Bacteroidetes clone BIui38
prokMSA_id:29190 Cytophaga sp. arc18 
prokMSA_id:29605 clone CR98-5-18 
prokMSA_id:30411 Flavobacterium xinjiangensis AS1.2749 
prokMSA_id:30501 Cytophagales clone PRD01b007B 
prokMSA_id:30567 clone CRD99-32 
prokMSA_id:31025 clone CR98-5-14 
prokMSA_id:32260 clone CR99-24-43 
prokMSA_id:34165 Flavobacterium sp. ST-92 
prokMSA_id:35795 CFB group clone:TYM--16 AB077353
prokMSA_id:36301 clone CR99-7-66 
prokMSA_id:36697 Flavobacterium sp. ST-10 
prokMSA_id:37557 clone CRD99-49 
prokMSA_id:39169 CFB group A1002 
prokMSA_id:41560 Flavobacterium aff. xylanivorum A1/C-aer/OIV 
prokMSA_id:43899 Bacteroidetes clone BIhii40
prokMSA_id:44287 Flavobacterium xinjiangensis As1.2748 
prokMSA_id:46708 clone PDS7 
prokMSA_id:48020 CFB group MERTZ_0CM_293 
prokMSA_id:48501 Cytophaga sp. P1 
prokMSA_id:49742 clone CR99-2-41 
prokMSA_id:52347 Flavobacterium sp. ST-82 
prokMSA_id:58543 Flavobacterium gelidilacus strain LMG 21477
prokMSA_id:58544 Flavobacterium gelidilacus strain LMG 21619
prokMSA_id:58629 Flavobacterium psychrophilum strain:IFO 15942
prokMSA_id:58640 Flavobacterium columnare strain:IFO 15943 AB078047
prokMSA_id:58641 Flexibacter aurantiacus subsp. excathedrus strain:IFO 16024
prokMSA_id:58643 Flavobacterium johnsoniae strain:IFO 15970 AB078043
prokMSA_id:59129 clone P-1R 
prokMSA_id:66512 clone cvf63053 
prokMSA_id:68626 clone KRA30+03 
prokMSA_id:71577 Cytophagales clone PRD01b005B AF289165
prokMSA_id:73504 CS112 AY124338
prokMSA_id:73974 Flavobacterium hibernum L39067
prokMSA_id:74897 clone:TCR14
prokMSA_id:75018 clone:TCRS7 AB075140
prokMSA_id:75069 clone:TSR3 AB075183
prokMSA_id:75084 clone:TCR12 AB075161
prokMSA_id:75225 clone:TCR3
prokMSA_id:75294 clone:TCRS5 AB075138
prokMSA_id:75341 clone:TCR11 AB075160
prokMSA_id:75427 clone:TSR9 AB075189
prokMSA_id:75511 clone:TCR7 AB075156
prokMSA_id:76012 clone:TCR17
prokMSA_id:76039 clone:TCRS15
prokMSA_id:76148 clone:TSRS7
prokMSA_id:76211 clone:TCR16
prokMSA_id:76295 clone:TSR4 AB075184
prokMSA_id:76842 clone:TSR6
prokMSA_id:77209 clone:TCR2
prokMSA_id:77258 clone:TCRS9 AB075142
prokMSA_id:77276 Earthworm gut ED5 
prokMSA_id:79763 Arctic sea ice ARK10104 
prokMSA_id:80159 Arctic sea ice ARK10287 AF468434
prokMSA_id:80173 Arctic sea ice associated ARK10272 
prokMSA_id:80488 Arctic sea ice ARK10161 
prokMSA_id:80779 Arctic sea ice ARK10270 
prokMSA_id:80970 Arctic sea ice ARK10159 
prokMSA_id:81617 Bacteroidetes ARK10264 
prokMSA_id:82700 Antarctic R-9033 strain R-9033
prokMSA_id:83757 Antarctic R-8022 strain R-8022
prokMSA_id:84396 Antarctic R-7933 strain R-7933 AJ440987
prokMSA_id:84445 Antarctic R-9122 strain R-9122
prokMSA_id:85147 Antarctic R-7550 strain R-7550
prokMSA_id:85662 Flavobacteria clone TLM12 
prokMSA_id:86223 Bacteroidetes clone CF39 AY274854
prokMSA_id:87141 Flavobacterium degerlachei strain LMG 21915
prokMSA_id:87289 Flavobacterium frigoris strain LMG 21922
prokMSA_id:88003 Flavobacterium micromati strain LMG 21919
prokMSA_id:88681 Flavobacterium sp. clone P80-1 
prokMSA_id:89871 Bacteroidetes clone MBMPE34
prokMSA_id:91181 G21 AY345400
prokMSA_id:91330 clone W4A-G04 AY345505
prokMSA_id:93577 Cytophaga sp. An11 isolate An11
prokMSA_id:93705 Cytophaga sp. An36 isolate An36
prokMSA_id:95461 Flavobacterium psychrolimnae strain LMG 22018
prokMSA_id:95581 Flavobacterium xanthum 16SrRNA strain R-9010
prokMSA_id:95849 Flavobacterium frigoris 16SrRNA strain R-7518 AJ601393
prokMSA_id:96230 Flavobacterium psychrolimnae strain LMG 22020
2.15.1.3.14.151 OTU 2 seqs
prokMSA_id:2419 Psychroflexus torquis str. 651 ACAM 623
prokMSA_id:18627 strain R7695
2.15.1.3.14.152 OTU 1 seq
prokMSA_id:48628 CFB group kpc113rc 
2.15.1.3.14.153 OTU 1 seq
prokMSA_id:44430 CFB group clone MERTZ_0CM_94 
2.15.1.3.14.154 OTU 1 seq
prokMSA_id:61975 Flavobacterium sp. V4.MO.31 
2.15.1.3.14.155 OTU 1 seq
prokMSA_id:61980 Flavobacterium sp. V4.BO.21 
2.15.1.3.15 PSH.BURTONENSIS_SUBGROUP 31 seqs
2.15.1.3.15.156 OTU 17 seqs
prokMSA_id:2438 Psychroserpens burtonensis ACAM 188
prokMSA_id:2443 Gelidibacter algens str. C8ST5 ACAM 536. U62914
prokMSA_id:2444 Gelidibacter algens str. A296 ACAM 551
prokMSA_id:2448 Psychroserpens BURTON-3
prokMSA_id:2464 Cytophaga sp. str. JTB244
prokMSA_id:17502 Gelidibacter algens ACAM 550 U62915
prokMSA_id:18364 Cytophagales Arctic97A-13 
prokMSA_id:27314 Gelidibacter McMurdo.124 
prokMSA_id:45624 Psychroserpens SIC.42372 
prokMSA_id:46048 Marine SCRIPPS_413 
prokMSA_id:46124 CFB group MERTZ_0CM_363 
prokMSA_id:49506 Marine MBIC1357 strain:MBIC1357
prokMSA_id:83782 Pseudocytophaga algae KMM 3557 AY228461
prokMSA_id:84329 Antarctic R-9217 strain R-9217
prokMSA_id:87495 Flavobacteriaceae G11A1 
prokMSA_id:92350 Bacteroidetes clone PLY-P1-33 
prokMSA_id:95118 clone A29 complete 
2.15.1.3.15.157 OTU 3 seqs
prokMSA_id:22467 CS_B047 
prokMSA_id:61189 clone UC1 
prokMSA_id:94749 Entomoplasmatales clone 61 AJ515719
2.15.1.3.15.158 OTU 1 seq
prokMSA_id:2460 clone BURTON-32
2.15.1.3.15.159 OTU 3 seqs
prokMSA_id:1894 Cytophaga fermentans M58766
prokMSA_id:70361 Flavobacterium sp. V4.ME.09 marine isolate AJ244696
prokMSA_id:80764 Arctic sea ice associated ARK10007 
2.15.1.3.15.160 OTU 1 seq
prokMSA_id:81005 Arctic sea ice ARK10217 
2.15.1.3.15.161 OTU 1 seq
prokMSA_id:81008 Arctic sea ice associated ARK10144 
2.15.1.3.15.162 OTU 1 seq
prokMSA_id:91580 K2-15 
2.15.1.3.15.163 OTU 1 seq
prokMSA_id:84711 Bacteroidetes clone CF30 
2.15.1.3.15.164 OTU 1 seq
prokMSA_id:86326 Bacteroidetes clone CF4 
2.15.1.3.15.165 OTU 1 seq
prokMSA_id:80530 Arctic sea ice ARK10267 
2.15.1.3.15.166 OTU 1 seq
prokMSA_id:84921 Bacteroidetes clone CF77 
2.15.1.3.16 ENVIRONMENTAL_CLONE_FL7_SUBGROUP 39 seqs
2.15.1.3.16.167 OTU 38 seqs
prokMSA_id:2342 Polaribacter irgensii str. 23-P ATCC 49675. M61002
prokMSA_id:2354 Polaribacter BURTON-11
prokMSA_id:2355 Polaribacter IC063 str. IC063. U85885
prokMSA_id:2357 Polaribacter filamentus str. 215. U73726
prokMSA_id:2358 Flexibacter maritimus str. R2 ATCC 43398 . M64629
prokMSA_id:2359 Cytophaga sp. str. JTB143
prokMSA_id:2411 Flavobacterium salegens DSM 5424 . M92279
prokMSA_id:2472 clone BURTON-18
prokMSA_id:19974 CFB group MERTZ_0CM_53 
prokMSA_id:22560 CFB group MERTZ_2CM_320 
prokMSA_id:28929 Polaribacter Arctic96B-11 AF354621
prokMSA_id:42044 CFB group MERTZ_2CM_22 
prokMSA_id:43476 Polaribacter Arctic97A-15 
prokMSA_id:44604 marine ZD0255 
prokMSA_id:45474 Polaribacter SIC.127 
prokMSA_id:48158 CFB group MERTZ_2CM_184 
prokMSA_id:51701 Cytophagales Arctic96B-24 
prokMSA_id:58630 Tenacibaculum maritimum strain:IFO 15946
prokMSA_id:59812 clone BB2_75 
prokMSA_id:66475 clone cvf63045 
prokMSA_id:66542 clone cvf116075 
prokMSA_id:79136 Bacteroidetes KMM 3938 
prokMSA_id:79935 Arctic sea ice associated ARK10121 
prokMSA_id:80091 Arctic sea ice ARK10048 
prokMSA_id:80621 Arctic sea ice ARK10105 
prokMSA_id:80722 Arctic sea ice ARK10004 AF468406
prokMSA_id:80782 Arctic sea ice ARK10129 
prokMSA_id:81099 Polaribacter irgensii strain ANT9044 
prokMSA_id:81527 Psychroflexus torquis strain ANT9268 
prokMSA_id:81957 Polaribacter irgensii strain ANT9210 AY167317
prokMSA_id:84331 Cellulophaga sp. E26 
prokMSA_id:84632 Bacteroidetes clone CF57 AY274857
prokMSA_id:88955 Flavobacteriaceae Gaa02_04net2_3 
prokMSA_id:92812 Bacteroidetes clone PLY-P2-67 AY354793
prokMSA_id:92953 Bacteroidetes clone PLY-P2-57 
prokMSA_id:92963 Bacteroidetes clone PLY-P2-101 
prokMSA_id:95259 clone D108 
prokMSA_id:97808 clone CS399 
2.15.1.3.16.168 OTU 1 seq
prokMSA_id:86177 Bacteroidetes clone CF6 
2.15.1.4 CYTOPHAGA_GROUP_II 5 seqs
2.15.1.4.169 OTU 1 seq
prokMSA_id:2471 clone BURTON-31
2.15.1.4.170 OTU 2 seqs
prokMSA_id:79316 clone ZA2515c 
prokMSA_id:92827 Bacteroidetes clone PLY-P1-118 
2.15.1.4.171 OTU 1 seq
prokMSA_id:52704 AA26 
2.15.1.4.172 OTU 1 seq
prokMSA_id:59793 clone BB2_87 
2.15.2 SPHINGOBACTERIUM_GROUP 30 seqs
2.15.2.173 OTU 8 seqs
prokMSA_id:2490 Sphingobacterium thalpophilum M58779
prokMSA_id:2491 Sphingobacterium multivorum str. OM-A8
prokMSA_id:26308 Sphingobacterium thalpophilum strain DSM 11723T AJ438177
prokMSA_id:44075 Bacteroidetes clone BIji46
prokMSA_id:63191 Sphingobacterium sp. p11E 
prokMSA_id:77995 Sphingobacterium sp. TUT1026 
prokMSA_id:79272 Sphingobacterium multivorum AB100738
prokMSA_id:79519 Sphingobacterium multivorum 
2.15.2.174 OTU 2 seqs
prokMSA_id:2494 Flavobacterium mizutaii M58796
prokMSA_id:46477 Flavobacterium mizutaii strain DSM 11724T
2.15.2.176 OTU 13 seqs
prokMSA_id:2484 Sphingobacterium OM-E81 str. OM-E81
prokMSA_id:18213 clone Car56rb 
prokMSA_id:29206 Pedobacter piscium strain DSM 11725T
prokMSA_id:39088 Pedobacter cryoconitis strain DSM 14825T
prokMSA_id:40607 Pedobacter africanus strain DSM 12126T
prokMSA_id:43819 Bacteroidetes clone BIsi29
prokMSA_id:59539 CAGY10 strain CAGY10 AF538748
prokMSA_id:75758 clone:TSRS13 AB075181
prokMSA_id:76495 clone:KCRS10 AB075066
prokMSA_id:77080 clone:KCRS8
prokMSA_id:86257 Bacteroidetes W-2003a parital AB107167
prokMSA_id:91480 Bacteroidetes EC2 
prokMSA_id:95052 Pedobacter sp. HHS22 strain HHS22
2.15.2.177 OTU 1 seq
prokMSA_id:66465 clone cvf116080 
2.15.2.178 OTU 1 seq
prokMSA_id:22691 Sphingobacterium faecium strain DSM 11690T
2.15.2.179 OTU 1 seq
prokMSA_id:97995 Bacteroidetes clone SW30
2.15.2.180 OTU 1 seq
prokMSA_id:52839 Pedobacter heparinus strain DSM 2366T
2.15.2.181 OTU 2 seqs
prokMSA_id:2503 Sphingobacterium spiritivorum M58778
prokMSA_id:66760 Sphingobacterium spiritivorum strain DSM 2582
2.15.2.182 OTU 1 seq
prokMSA_id:56235 Flexibacter canadensis strain:IFO 15130
2.15.4 LEWINELLA_GROUP 43 seqs
2.15.4.2 FLX.SANCTI_SUBGROUP 39 seqs
2.15.4.2.183 OTU 1 seq
prokMSA_id:58633 Flexibacter japonensis strain:IFO 16041
2.15.4.2.184 OTU 1 seq
prokMSA_id:66507 clone cvf61048 
2.15.4.2.185 OTU 4 seqs
prokMSA_id:40474 clone CR99-24-05 AF429115
prokMSA_id:79195 clone ZA2626c AF382107
prokMSA_id:81165 clone KD3-83 
prokMSA_id:81785 clone KD2-78 
2.15.4.2.186 OTU 16 seqs
prokMSA_id:17872 marine ZD0203 
prokMSA_id:26459 Bacteroidetes clone BIti15
prokMSA_id:37253 marine ZD0403 
prokMSA_id:45113 ECS45 
prokMSA_id:62953 clone LPU78 
prokMSA_id:66517 clone cvf70155 
prokMSA_id:80980 Arctic sea ice ARK10063 
prokMSA_id:81377 clone KD3-6 
prokMSA_id:81414 clone KD3-117 
prokMSA_id:81764 Bacteroidetes clone VC10 
prokMSA_id:81804 clone KD9-156 
prokMSA_id:81938 clone KD3-128 
prokMSA_id:82316 clone KD9-169 
prokMSA_id:83660 Bacteroidetes clone CF60 
prokMSA_id:90706 soil clone Dpcom60 
prokMSA_id:92712 Bacteroidetes clone PLY-P3-1 
2.15.4.2.187 OTU 3 seqs
prokMSA_id:2512 Flavobacterium ferrugineum ATCC 13524 . M62798
prokMSA_id:23290 clone CRP99-69 
prokMSA_id:93279 CFB group clone KCM-C-67
2.15.4.2.188 OTU 3 seqs
prokMSA_id:27977 ECS44 
prokMSA_id:47936 Flavobacterium-like sp. oral clone AZ105 
prokMSA_id:79594 clone ZA3907c AF382130
2.15.4.2.189 OTU 3 seqs
prokMSA_id:42738 Flexibacter sp. clone:TSL-25
prokMSA_id:92169 Bacteroidetes clone PLY-P1-89 AY354780
prokMSA_id:92532 Bacteroidetes clone PLY-P1-27 
2.15.4.2.190 OTU 1 seq
prokMSA_id:49350 clone CRP99-58 
2.15.4.2.191 OTU 7 seqs
prokMSA_id:2521 Chitinophaga pinensis ACM 2034 . AF078775
prokMSA_id:2525 Flexibacter sancti ATCC 23092 . M62795
prokMSA_id:41596 Chitinophaga sp. 1105 
prokMSA_id:58620 Flexibacter sancti strain:IFO 16033
prokMSA_id:58622 Flexibacter sancti strain:IFO 15057
prokMSA_id:58639 Flexibacter filiformis strain:IFO 15056
prokMSA_id:71851 Flexibacter cf. sancti AF181568
2.15.4.3 LEW.NIGRICANS_SUBGROUP 4 seqs
2.15.4.3.192 OTU 1 seq
prokMSA_id:63062 Saprospira grandis 
2.15.4.3.193 OTU 1 seq
prokMSA_id:999994 SYN Sap.grandi
2.15.4.3.194 OTU 2 seqs
prokMSA_id:2533 Haliscomenobacter hydrossis M58790
prokMSA_id:22670 clone CR98-5-24 
2.15.6 CY.AURANTIACA_GROUP 30 seqs
2.15.6.195 OTU 1 seq
prokMSA_id:91207 clone GLBR-3 
2.15.6.196 OTU 2 seqs
prokMSA_id:2617 IFAM 3359
prokMSA_id:2619 IFAM 3359. X90706
2.15.6.197 OTU 14 seqs
prokMSA_id:2613 IFAM 1493
prokMSA_id:2614 IFAM 2074
prokMSA_id:2615 IFAM 3211
prokMSA_id:2616 IFAM 3215. X90703
prokMSA_id:2618 IFAM 3359. X90705
prokMSA_id:21292 Cytophagales clone 26 AF361199
prokMSA_id:26447 CFB group clone SM1E06 
prokMSA_id:46730 Cytophagales clone 13 
prokMSA_id:47912 clone CR99-35-69 
prokMSA_id:53372 clone CR99-2-46 
prokMSA_id:87893 Bacteroidetes clone FL08H07 
prokMSA_id:89802 Bellia baltica strain BA1
prokMSA_id:90126 Bellia baltica strain BA134 T
prokMSA_id:91944 clone W4A-D01 
2.15.6.198 OTU 2 seqs
prokMSA_id:2582 Cytophaga hutchinsonii str. D465 P.H.A. Sneath ATCC 33406 . 
prokMSA_id:94866 Cytophaga hutchinsonii Chut_22 whole genome shotgun 
2.15.6.199 OTU 4 seqs
prokMSA_id:2594 Runella slithyformis ATCC 29530 . M62786
prokMSA_id:29165 Unknown organism 0411
prokMSA_id:31714 sp. sbr-gs16 
prokMSA_id:40157 glc13 
2.15.6.200 OTU 2 seqs
prokMSA_id:2579 Microscilla marina str. SIO-8 ATCC 23134 . M58793
prokMSA_id:58608 Microscilla marina strain:IFO 16560
2.15.6.201 OTU 2 seqs
prokMSA_id:2600 Microscilla furvescens str. TV-2 ATCC 23129. M58792
prokMSA_id:58609 Microscilla furvescens strain:IFO 15994
2.15.6.202 OTU 1 seq
prokMSA_id:2601 clone BURTON-24
2.15.6.203 OTU 2 seqs
prokMSA_id:2599 Flexibacter ruber str. Lewin GEY ATCC 23103 . M58788
prokMSA_id:58624 Flexibacter ruber strain:IFO 16677
2.15.7 FLX.LITORALIS_GROUP 2 seqs
2.15.7.204 OTU 2 seqs
prokMSA_id:2625 Flexibacter roseolus str. Lewin CR-155 ATCC 23088 . M58787
prokMSA_id:58625 Flexibacter roseolus strain:IFO 16707
2.15.8 TMN.LAPSUM_GROUP 1 seq
2.15.8.205 OTU 1 seq
prokMSA_id:2626 Thermonema lapsum ATCC 43542
2.16 GREEN_SULFUR_BACTERIA 2 seqs
2.16.3 CHLOROBIUM_GROUP 2 seqs
2.16.3.206 OTU 2 seqs
prokMSA_id:2685 Chlorobium tepidum str. NZC. M58468
prokMSA_id:64302 Chlorobium tepidum TLS section 14 of 194 of the complete gen
2.18 ENVIRONMENTAL_CLONE_WCHB1-31_GROUP 10 seqs
2.18.207 OTU 2 seqs
prokMSA_id:66949 clone SHA-2 AJ306740
prokMSA_id:81161 clone ZZ14AC19 
2.18.208 OTU 1 seq
prokMSA_id:67537 sludge A30 
2.18.209 OTU 1 seq
prokMSA_id:2724 clone SJA-170
2.18.210 OTU 1 seq
prokMSA_id:83926 clone CCD21 
2.18.211 OTU 1 seq
prokMSA_id:23344 green nonsulfur MERTZ_21CM_337 
2.18.212 OTU 2 seqs
prokMSA_id:19494 clone GIF1 
prokMSA_id:70228 a2b046 AF419665
2.18.213 OTU 1 seq
prokMSA_id:84512 Anaerobic filamentous KIBI-1 
2.18.214 OTU 1 seq
prokMSA_id:2743 clone WCHA1-69
2.20 PLANCTOMYCES_AND_RELATIVES 101 seqs
2.20.1 PIRELLULA_GROUP 7 seqs
2.20.1.2 PIR.STALEYI_SUBGROUP 7 seqs
2.20.1.2.215 OTU 3 seqs
prokMSA_id:2808 Pirellula marina DSM 3645
prokMSA_id:2811 str. 116
prokMSA_id:2817 Pirellula marina ATCC 49069 . NONE
2.20.1.2.216 OTU 4 seqs
prokMSA_id:2825 Pirellula staleyi DSM 6068 . X81946
prokMSA_id:2826 Pirellula staleyi ATCC 27377. M34126
prokMSA_id:2828 Pirellula staleyi DSM 6068 . AJ231183
prokMSA_id:35238 Pirellula staleyi strain ATCC 35122 
2.20.6 CHLAMYDOPHILA_SUBDIVISION 94 seqs
2.20.6.2 CHLAMYDOPHILA_GROUP 94 seqs
2.20.6.2.3 CHLAMYDOPHILA_SUBGROUP 94 seqs
2.20.6.2.3.217 OTU 1 seq
prokMSA_id:2951 Chlamydophila Chlamyophila cf. pneumoniae CPXT1 str. CPXT1
2.20.6.2.3.218 OTU 1 seq
prokMSA_id:2952 Chlamydophila pneumoniae str. N16
2.20.6.2.3.219 OTU 17 seqs
prokMSA_id:2954 Chlamydia trachomatis str. 434
prokMSA_id:2955 Chlamydia trachomatis str. L2/434/BU ATCC VR-902B
prokMSA_id:2956 Chlamydia trachomatis str. E/UW-5/Cx
prokMSA_id:3009 Chlamydia trachomatis str. HAR-13
prokMSA_id:3010 Chlamydia trachomatis str. A.SA-1.OT
prokMSA_id:3011 Chlamydia trachomatis str. B/TW-5/OT
prokMSA_id:3012 Chlamydia trachomatis str. C/TW-3/OT
prokMSA_id:3013 Chlamydia trachomatis str. D/TW-3/CX
prokMSA_id:3014 Chlamydia trachomatis str. D/UW-3/CX
prokMSA_id:3015 Chlamydia trachomatis str. D/UW-3/CX
prokMSA_id:3020 Chlamydia trachomatis str. A/Har-13
prokMSA_id:3024 Chlamydia suis str. S45
prokMSA_id:3025 Chlamydia suis str. R22
prokMSA_id:49665 Chlamydia trachomatis A/Har-13T 
prokMSA_id:50790 Chlamydia trachomatis complete genome
prokMSA_id:52481 Chlamydia trachomatis complete genome
prokMSA_id:72345 Chlamydia suis strain S45 complete ; and 23S 
2.20.6.2.3.220 OTU 11 seqs
prokMSA_id:3027 Chlamydophila pecorum str. Bo/E58
prokMSA_id:3030 Chlamydia pecorum str. Bo/Shizuoka
prokMSA_id:3031 Chlamydia pecorum str. Bo/Maeda
prokMSA_id:3032 Chlamydophila pecorum str. Ov/IPA ATCC VR629
prokMSA_id:3033 Chlamydia pecorum str. Koala II
prokMSA_id:3034 Chlamydia pecorum str. Bo-1485
prokMSA_id:3035 Chlamydia pecorum str. Bo-Maeda
prokMSA_id:3036 Chlamydia pecorum str. Bo-Yokohama
prokMSA_id:3037 Chlamydia pecorum str. SPV789
prokMSA_id:3040 str. IPAIowa polyarthritis ATCC VR-629
prokMSA_id:36991 Chlamydia pecorum Bo/Maeda 
2.20.6.2.3.221 OTU 1 seq
prokMSA_id:27186 alpha GR-371.III.105 
2.20.6.2.3.222 OTU 63 seqs
prokMSA_id:2937 Chlamydophila felis str. Fe/Pn-1 ATCC VR120
prokMSA_id:2938 Chlamydophila felis str. Fe/145
prokMSA_id:2939 Chlamydophila felis str. Fe/B166
prokMSA_id:2940 Chlamydophila felis str. Fe/C164
prokMSA_id:2941 Chlamydophila felis str. Fe/C454
prokMSA_id:2942 Chlamydophila felis str. Fe/Cello
prokMSA_id:2943 Chlamydophila felis str. Fe/C429
prokMSA_id:2944 Chlamydophila felis str. Fe-145
prokMSA_id:2946 Chlamydophila psittaci
prokMSA_id:2959 Chlamydophila abortus str. Ov/B577 ATCC VR-656
prokMSA_id:2960 Chlamydia psittaci str. Prk/Daruma
prokMSA_id:2961 Chlamydia psittaci str. Prk46
prokMSA_id:2962 Chlamydia psittaci str. Prk48
prokMSA_id:2963 Chlamydia psittaci str. Prk49
prokMSA_id:2964 Chlamydophila psittaci str. 6BC ATCC VR-125
prokMSA_id:2966 Chlamydia psittaci str. Bud-1
prokMSA_id:2967 Chlamydia psittaci str. Bud-11F from a budgerigar
prokMSA_id:2968 Chlamydia psittaci str. Bud-16F from a budgerigar
prokMSA_id:2969 Chlamydia psittaci str. Bud-5695 from a budgerigar
prokMSA_id:2970 Chlamydia psittaci str. Cal-10 ATCC VR-122
prokMSA_id:2971 Chlamydia psittaci str. GCP-1
prokMSA_id:2972 Chlamydia psittaci str. Itoh
prokMSA_id:2973 Chlamydia psittaci str. Izawa-1 from a budgerigar
prokMSA_id:2974 Chlamydia psittaci str. Koala
prokMSA_id:2975 Chlamydia psittaci str. Mizuno-1F from a budgerigar
prokMSA_id:2976 Chlamydia psittaci str. Ohmiya
prokMSA_id:2977 Chlamydia psittaci str. P1015 from a feral pigeon
prokMSA_id:2978 Chlamydia psittaci str. P1041 from a feral pigeon
prokMSA_id:2979 Chlamydia psittaci str. P1305 from a feral pigeon
prokMSA_id:2980 Chlamydia psittaci str. P1307 from a feral pigeon
prokMSA_id:2981 Chlamydia psittaci str. P1313 from a feral pigeon
prokMSA_id:2982 Chlamydia psittaci str. P1315 from a feral pigeon
prokMSA_id:2983 Chlamydia psittaci str. P1321 from a feral pigeon
prokMSA_id:2984 Chlamydia psittaci str. P1605 from a feral pigeon
prokMSA_id:2985 Chlamydia psittaci str. P1646 from a feral pigeon
prokMSA_id:2986 Chlamydia psittaci str. P1888 from a feral pigeon
prokMSA_id:2988 Chlamydophila psittaci PCM 131
prokMSA_id:2989 Chlamydia psittaci PCM 27
prokMSA_id:2990 Chlamydia psittaci PCM 30
prokMSA_id:2991 Chlamydia psittaci PCM 44
prokMSA_id:2992 Chlamydia psittaci PCM 55
prokMSA_id:2993 Chlamydia psittaci PCM 9
prokMSA_id:2994 Chlamydia psittaci str. Sugimoto-F from a cockatiel
prokMSA_id:2995 Chlamydia psittaci str. Sugawara from a budgerigar
prokMSA_id:2997 Chlamydia psittaci str. T4
prokMSA_id:2998 Chlamydia psittaci str. Tk-Cal
prokMSA_id:3000 Chlamydophila psittaci str. 6BC ATCC VR-125
prokMSA_id:3001 Chlamydophila psittaci
prokMSA_id:3002 Chlamydophila caviae str. Gp/Ic; GPIC ATCC VR813
prokMSA_id:3004 str. GPIC ATCC VR-813
prokMSA_id:3005 Chlamydophila felis str. strain VR-120 ATCC VR-120
prokMSA_id:3016 Chlamydophila psittaci str. 6BC ATCC VR-125
prokMSA_id:3017 Chlamydia psittaci str. Frt-Hu/Ca110
prokMSA_id:3018 Chlamydia psittaci str. Prt/GCP-1
prokMSA_id:3021 Chlamydophila abortus str. B577 ATCC VR-656
prokMSA_id:3022 Chlamydophila abortus str. EBA
prokMSA_id:20912 Chlamydia psittaci Fe/Pn-1 
prokMSA_id:25134 Chlamydia psittaci Gp/Ic 
prokMSA_id:36508 Chlamydia psittaci Prk/Daruma 
prokMSA_id:44021 Chlamydia psittaci Prt/GCP1 
prokMSA_id:70709 Chlamydophila psittaci strain 6BC and 23S operon complete 
prokMSA_id:83486 Chlamydophila caviae GPIC complete genome
prokMSA_id:85110 Chlamydophila caviae GPIC section 4 of 4 of the complete gen
2.21 CYANOBACTERIA_AND_CHLOROPLASTS 372 seqs
2.21.1 CYANOBACTERIA 214 seqs
2.21.1.1 OSCILLATORIA_GROUP 36 seqs
2.21.1.1.223 OTU 4 seqs
prokMSA_id:3052 Trichodesmium erythraeum
prokMSA_id:3054 Trichodesmium contortum. AF013028
prokMSA_id:3055 Trichodesmium thiebautii. AF013027
prokMSA_id:59107 Trichodesmium havanum str. F34-5 AF518770
2.21.1.1.224 OTU 1 seq
prokMSA_id:58491 Lyngbya hieronymusii var. hieronymusii strain: CN4-3
2.21.1.1.225 OTU 11 seqs
prokMSA_id:3062 Arthrospira sp. PCC 7345. X75044
prokMSA_id:3288 "Oscillatoria neglecta" str. M-82
prokMSA_id:34894 Leptolyngbya PCC7104 AB039012
prokMSA_id:38561 Oscillatoria sp. AJ133106
prokMSA_id:49980 Arthrospira maxima 
prokMSA_id:55271 Arthrospira sp. OUQDS6 complete ; tRNA-Ile and tRNA-Ala gene
prokMSA_id:69038 Arthrospira sp. FACHB438 complete ; tRNA-Ile and tRNA-Ala ge
prokMSA_id:69039 Arthrospira sp. FACHB439 complete ; tRNA-Ile and tRNA-Ala ge
prokMSA_id:71484 Arthrospira sp. genes tRNA-Ile tRNA-Ala 23S X75044
prokMSA_id:80667 Spirulina platensis 
prokMSA_id:91721 clone K2-S-25 AY344430
2.21.1.1.226 OTU 3 seqs
prokMSA_id:3053 Trichodesmium tenue
prokMSA_id:47726 Oscillatoria sancta 
prokMSA_id:74791 Oscillatoria sancta 
2.21.1.1.227 OTU 2 seqs
prokMSA_id:26990 Oscillatoria acuminata 
prokMSA_id:89126 Dpcom98 
2.21.1.1.228 OTU 7 seqs
prokMSA_id:56232 Planktothricoides raciborskii strain: T1-6-2
prokMSA_id:58434 Planktothricoides raciborskii strain: NSLA4
prokMSA_id:58435 Planktothricoides raciborskii strain: OR1-1
prokMSA_id:58436 Planktothricoides raciborskii strain: NSLA3
prokMSA_id:58439 Planktothricoides raciborskii strain: NIES 207
prokMSA_id:58445 Planktothricoides raciborskii strain: INBaOR
prokMSA_id:82269 Phormidium sp. ETS-05 isolate ETS-05
2.21.1.1.229 OTU 7 seqs
prokMSA_id:3060 Synechococcus ATCC700243 str. C1 ATCC 700243
prokMSA_id:40063 Synechococcus PCC6716 
prokMSA_id:54965 Synechococcus PCC6717 
prokMSA_id:81500 cyanobacterium JapanCy10 
prokMSA_id:82001 cyanobacterium JapanCy10 
prokMSA_id:82105 cyanobacterium JapanCy10 
prokMSA_id:82454 cyanobacterium JapanCy11 
2.21.1.1.230 OTU 1 seq
prokMSA_id:36764 cyanobacterium clone SM2C12 
2.21.1.2 NOSTOC_GROUP 37 seqs
2.21.1.2.232 OTU 3 seqs
prokMSA_id:3106 Nostoc ATCC53789 ATCC 53789
prokMSA_id:63340 Nostoc commune strain:M-13
prokMSA_id:83183 Nostoc commune country:Japan:Ishikawa Kanazawa Asano River
2.21.1.2.233 OTU 1 seq
prokMSA_id:43551 Anabaena planctonica strain 71
2.21.1.2.234 OTU 20 seqs
prokMSA_id:3091 Nodularia BCNOD9427 str. BCNOD9427
prokMSA_id:3208 Xenococcus PCC7305 PCC 7305
prokMSA_id:19362 Nodularia sp. strain PCC7804 
prokMSA_id:20056 Nodularia harveyana strain PCC7804 
prokMSA_id:20340 Nodularia sp. PCC 9350 
prokMSA_id:24739 Nodularia harveyana strain UTEX-B2093 
prokMSA_id:24971 Nodularia spumigena strain NSOR12 
prokMSA_id:29506 Cyanospira rippkae 
prokMSA_id:32123 Nodularia spumigena strain NSGL02A10 
prokMSA_id:34133 Nodularia spumigena strain NSOR10 
prokMSA_id:36477 Anabaena bergii 
prokMSA_id:37800 Nodularia spumigena strain L575 
prokMSA_id:40979 Nodularia spumigena strain NSOR04 
prokMSA_id:44512 Nodularia spumigena strain NSPH02 
prokMSA_id:46957 Nodularia spumigena strain UTEX-B2092 
prokMSA_id:52046 Nodularia spumigena strain HEM 
prokMSA_id:70323 Nodularia spumigena strain BY1 AF268004
prokMSA_id:71066 Nodularia sp. strain BY1 AJ133177
prokMSA_id:71521 Nodularia sp. strain GR8b AJ133178
prokMSA_id:71803 Nodularia sp. strain NSOR-12 AJ133180
2.21.1.2.235 OTU 13 seqs
prokMSA_id:3092 Nostoc muscorum PCC 7120
prokMSA_id:3095 "Anabaena variabilis" IAM M-3
prokMSA_id:29130 Anabaena variabilis NIES23 
prokMSA_id:44376 Nostoc sp. PCC 7120 complete genome section 7/19
prokMSA_id:46727 Nostoc sp. PCC 7120 complete genome section 15/19
prokMSA_id:52227 Nostoc sp. PCC 7120 complete genome section 18/19
prokMSA_id:53088 Nostoc sp. PCC 7120 complete genome section 8/19
prokMSA_id:53707 Nostoc sp. PCC 7120 complete genome
prokMSA_id:79820 Anabaena variabilis 
prokMSA_id:80820 Calothrix brevissima 
prokMSA_id:80843 Nostoc linckia 
prokMSA_id:82934 Nostoc entophytum IAM M-267 
prokMSA_id:83776 Tolypothrix sp. IAM M-259 
2.21.1.3 GLOEOTHECE-GLOEOCAPSA_GROUP 24 seqs
2.21.1.3.236 OTU 5 seqs
prokMSA_id:35028 Cyanothece sp. PCC 8801 
prokMSA_id:67712 Cyanothece sp. SKTU126 genes Ile-tRNA 23S and complete 
prokMSA_id:67714 Gloeothece sp. KO68DGA genes Ile-tRNA 23S and complete 
prokMSA_id:67719 Gloeothece sp. KO11DG genes r Ile-tRNA 23S and complete 
prokMSA_id:67720 Gloeothece sp. SK40 genes Ile-tRNA 23S and complete 
2.21.1.3.237 OTU 10 seqs
prokMSA_id:16864 cyanobacterium 
prokMSA_id:24335 Pleurocapsa PCC7319 
prokMSA_id:26117 cyanobacterium 128-56 
prokMSA_id:36128 cyanobacterium clone CD5F5 
prokMSA_id:39837 cyanobacterium clone CD4A5 AY038547
prokMSA_id:42503 cyanobacterium clone CD1B7 AY037873
prokMSA_id:46080 Stanieria PCC7301 
prokMSA_id:66484 clone cvf61044 
prokMSA_id:80524 Xenococcus sp. PCC 7307 
prokMSA_id:80822 Pleurocapsa sp. PCC 7314 
2.21.1.3.238 OTU 4 seqs
prokMSA_id:3248 str. MPI 96N303
prokMSA_id:3249 str. MPI 96N304
prokMSA_id:3301 Prochlorothrix hollandica
prokMSA_id:3302 clone LD16. AJ007866
2.21.1.3.239 OTU 1 seq
prokMSA_id:49254 Pleurocapsa PCC7327 
2.21.1.3.240 OTU 3 seqs
prokMSA_id:3240 Gloeothece membranacea
prokMSA_id:28876 Stanieria cyanosphaera 
prokMSA_id:48280 Stanieria cyanosphaera 
2.21.1.3.241 OTU 1 seq
prokMSA_id:25314 cyanobacterium clone SM1D04 
2.21.1.4 LEPTOLYNGBYA_GROUP 14 seqs
2.21.1.4.242 OTU 2 seqs
prokMSA_id:3292 clone QSSC9L-4
prokMSA_id:57549 Acaryochloris marina strain MBIC 11017 
2.21.1.4.243 OTU 4 seqs
prokMSA_id:3265 Leptolyngbya sp. str. VRUC 135 Albertano 1985/1. X84809
prokMSA_id:3274 unnamed organism. AF076159
prokMSA_id:29805 Phormidium autumnale 
prokMSA_id:81275 cyanobacterium JapanCy08 
2.21.1.4.244 OTU 2 seqs
prokMSA_id:94351 Antarctic cyanobacterium clone Fr094 complete 
prokMSA_id:94503 Antarctic cyanobacterium clone Fr239 complete 
2.21.1.4.245 OTU 1 seq
prokMSA_id:40082 Synechococcus PCC7902 
2.21.1.4.247 OTU 5 seqs
prokMSA_id:31912 Fischerella muscicola 
prokMSA_id:60570 clone B95 
prokMSA_id:60602 clone G01 
prokMSA_id:82530 Fischerella major NIES 592 
prokMSA_id:83042 Fischerella sp. IAM M-263 
2.21.1.6 PHORMIDIUM_GROUP 2 seqs
2.21.1.6.248 OTU 1 seq
prokMSA_id:3293 "Plectonema F3" str. F3
2.21.1.6.249 OTU 1 seq
prokMSA_id:52706 Leptolyngbya PCC7375 
2.21.1.8 MICROCYSTIS_GROUP 2 seqs
2.21.1.8.250 OTU 1 seq
prokMSA_id:3299 Synechococcus sp. PCC 6301
2.21.1.8.251 OTU 1 seq
prokMSA_id:17697 Planktothrix sp. FP1 
2.21.1.9 PRC.MARINUS_GROUP 99 seqs
2.21.1.9.252 OTU 75 seqs
prokMSA_id:3338 Synechococcus WH8101 str. WH8101
prokMSA_id:16960 clone CRP99-52 
prokMSA_id:21599 cyanobacterium DCM-FREE-7 
prokMSA_id:22911 Synechococcus PCC9005 
prokMSA_id:23065 Synechococcus NAC1-5 
prokMSA_id:28869 Cyanobacterium 5X15 
prokMSA_id:29395 cyanobacterium clone CD2D9 AY038580
prokMSA_id:30258 clone CR98-24-58 
prokMSA_id:30851 Synechococcus sp. PS721 
prokMSA_id:31761 clone CRP99-70 
prokMSA_id:33530 Synechococcus sp. WH 8018 
prokMSA_id:33656 Synechococcus sp. PS723 
prokMSA_id:34370 clone CR99-24-62 
prokMSA_id:34642 clone CR98-24-74 
prokMSA_id:45601 Synechococcus sp. PS717 
prokMSA_id:46371 clone CRP99-33 
prokMSA_id:53206 Synechococcus sp. LBB3 ; internal transcribed spacer 1 compl
prokMSA_id:54179 Synechococcus sp. MIT S9220 ; internal transcribed spacer co
prokMSA_id:54544 Synechococcus sp. WH 8020 ; internal transcribed spacer comp
prokMSA_id:54601 Synechococcus sp. LBG2 ; internal transcribed spacer 1 compl
prokMSA_id:58392 Synechococcus sp. MB11A04 ; tRNA-Ile and tRNA-Ala genes comp
prokMSA_id:58393 Synechococcus sp. MB11E09 ; tRNA-Ile and tRNA-Ala genes comp
prokMSA_id:59293 Synechococcus sp. WH 8012 
prokMSA_id:62935 Synechococcus sp. UBR 
prokMSA_id:62939 Synechococcus sp. 1002 
prokMSA_id:70431 Synechococcus sp. MLS1228cl3 AF400152
prokMSA_id:81048 Synechococcus sp. clone A715009 
prokMSA_id:81108 Synechococcus sp. clone A315001 
prokMSA_id:81268 Synechococcus sp. clone A315006 
prokMSA_id:81277 Synechococcus sp. clone A715016 
prokMSA_id:81379 Synechococcus sp. clone A715001 
prokMSA_id:81393 Synechococcus sp. clone A315003 
prokMSA_id:81413 Synechococcus sp. clone A715015 
prokMSA_id:81449 Synechococcus sp. clone A715003 
prokMSA_id:81563 Synechococcus sp. clone A315007 
prokMSA_id:81631 Synechococcus sp. clone A715005 
prokMSA_id:81638 Synechococcus sp. clone A315025 
prokMSA_id:81662 Synechococcus sp. clone A315023 
prokMSA_id:81715 Synechococcus sp. clone A715004 
prokMSA_id:81769 Synechococcus sp. clone A715013 
prokMSA_id:81859 Synechococcus sp. clone A715006 
prokMSA_id:81872 Synechococcus sp. clone A715012 
prokMSA_id:81898 Synechococcus sp. clone A315010 
prokMSA_id:82121 Synechococcus sp. clone A715011 
prokMSA_id:82146 Synechococcus sp. clone A315004 
prokMSA_id:82220 Synechococcus sp. clone A715014 
prokMSA_id:82249 Synechococcus sp. clone A315011 
prokMSA_id:82268 Synechococcus sp. clone A715002 
prokMSA_id:82280 Synechococcus sp. clone A315008 
prokMSA_id:82376 Synechococcus sp. clone A315020 
prokMSA_id:82398 Synechococcus sp. clone A315026 
prokMSA_id:82763 Synechococcus sp. CC9311 
prokMSA_id:83014 Synechococcus sp. RS9904 
prokMSA_id:83222 Synechococcus sp. RS9902 
prokMSA_id:83391 Synechococcus sp. WH 8016 
prokMSA_id:83422 Synechococcus sp. WH 8002 
prokMSA_id:83438 Synechococcus sp. RS9910 
prokMSA_id:83566 Synechococcus sp. RS9907 
prokMSA_id:84053 Synechococcus sp. Oli31 
prokMSA_id:84712 Synechococcus sp. CC9605 
prokMSA_id:84801 Synechococcus sp. RS9919 
prokMSA_id:84810 Synechococcus sp. RS9909 
prokMSA_id:85143 Synechococcus sp. RS9911 
prokMSA_id:85276 Synechococcus sp. WH 8109 
prokMSA_id:85406 Synechococcus sp. RS9920 
prokMSA_id:85509 Synechococcus sp. RS9901 
prokMSA_id:85670 Synechococcus sp. RS9914 
prokMSA_id:85806 Synechococcus sp. RS9912 
prokMSA_id:85960 Synechococcus sp. Eum14 
prokMSA_id:85989 Synechococcus sp. RS9916 
prokMSA_id:86023 Synechococcus sp. RS9906 
prokMSA_id:86155 Synechococcus sp. RS9903 
prokMSA_id:86621 Synechococcus sp. RS9908 
prokMSA_id:91747 clone K2-30-3 AY344431
prokMSA_id:91791 clone L2-50 AY344432
2.21.1.9.253 OTU 2 seqs
prokMSA_id:23052 cyanobacterium clone CD3E9 
prokMSA_id:37989 Synechococcus PCC7009 
2.21.1.9.254 OTU 22 seqs
prokMSA_id:3346 Synechococcus sp. PCC 7001
prokMSA_id:3347 Prochlorococcus MIT9303 str. MIT9303
prokMSA_id:3348 Prochlorococcus MIT9313 str. MIT9313
prokMSA_id:3353 Prochlorococcus MIT9211 str. MIT9211. AF115270
prokMSA_id:27195 clone CR99-24-15 
prokMSA_id:32068 cyanobacterium clone CD2G1 
prokMSA_id:53164 Prochlorococcus marinus str. SS2 ; internal transcribed spac
prokMSA_id:53658 Prochlorococcus marinus str. SS51 ; internal transcribed spa
prokMSA_id:53820 Prochlorococcus marinus str. MIT 9303 ; internal transcribed
prokMSA_id:54408 Prochlorococcus marinus str. MIT 9313 ; internal transcribed
prokMSA_id:54893 Prochlorococcus marinus str. LG ; internal transcribed space
prokMSA_id:62931 Synechococcus sp. TAGS 
prokMSA_id:62934 Synechococcus sp. HOS 
prokMSA_id:62937 Synechococcus sp. T7cc1 
prokMSA_id:72701 Prochlorococcus marinus str. SS35 ; internal transcribed spa
prokMSA_id:79350 clone ZA3703c 
prokMSA_id:83400 Synechococcus sp. MH305 AY224198
prokMSA_id:88136 Prochlorococcus marinus subsp. marinus str. CCMP1375 complet
prokMSA_id:89557 Prochlorococcus marinus subsp. marinus str. CCMP1375 section
prokMSA_id:92726 Prochlorococcus marinus str. MIT 9313 complete genome
prokMSA_id:93043 Prochlorococcus marinus MIT9313 complete genome; segment 6/7
prokMSA_id:93066 Prochlorococcus marinus MIT9313 complete genome; segment 1/7
2.21.2 CHLOROPLASTS_AND_CYANELLES 153 seqs
2.21.2.3 OTHER_CHLOROPLASTS 29 seqs
2.21.2.3.1 SKELETONEMA_SUBGROUP 4 seqs
2.21.2.3.1.255 OTU 1 seq
prokMSA_id:66548 clone cvf74026 
2.21.2.3.1.256 OTU 1 seq
prokMSA_id:3402 marine snow associated clone agg56
2.21.2.3.1.257 OTU 1 seq
prokMSA_id:3447 Olisthodiscus luteus stramenopile -- chloroplast
2.21.2.3.1.258 OTU 1 seq
prokMSA_id:3448 Pylaiella littoralis brown alga -- chloroplast
2.21.2.3.2 EUGLENA_SUBGROUP 2 seqs
2.21.2.3.2.259 OTU 1 seq
prokMSA_id:3454 Astasia longa str. CCAP 1204-17a colorless euglenophycean al
2.21.2.3.2.260 OTU 1 seq
prokMSA_id:3456 Euglena gracilis euglenophycean alga -- chloroplast
2.21.2.3.4 PYRENOMONAS_SUBGROUP 19 seqs
2.21.2.3.4.261 OTU 15 seqs
prokMSA_id:3475 Palmaria palmata edible? red alga -- chloroplast
prokMSA_id:55962 plastid clone ML1218M-3 
prokMSA_id:63795 plastid clone ML513M-21 AF454341
prokMSA_id:63797 plastid clone ML512M-4 
prokMSA_id:63799 plastid clone ML512M-11 
prokMSA_id:63802 plastid clone ML512M-1 
prokMSA_id:63804 plastid clone ML320J-7 
prokMSA_id:63805 plastid clone ML320J-27 
prokMSA_id:63807 plastid clone ML316M-3 
prokMSA_id:63812 plastid clone ML310M-1a 
prokMSA_id:63816 plastid clone ML1218M-26 
prokMSA_id:63817 plastid clone ML1218M-24 
prokMSA_id:63818 plastid clone ML310M-37 
prokMSA_id:63819 plastid clone ML1218M-21 
prokMSA_id:63822 plastid clone ML110M-7 
2.21.2.3.4.262 OTU 2 seqs
prokMSA_id:60252 Proteomonas sulcata plastid 
prokMSA_id:60255 Chroomonas placoidea plastid 
2.21.2.3.4.263 OTU 1 seq
prokMSA_id:29775 Compsopogon coeruleus ; plastid plastid product
2.21.2.3.4.264 OTU 1 seq
prokMSA_id:3470 Pyrenomonas salina cryptomonad -- chloroplast
2.21.2.3.5 PORPHYRA_SUBGROUP 1 seq
2.21.2.3.5.265 OTU 1 seq
prokMSA_id:3473 Antithamnion sp. red alga -- chloroplast
2.21.2.3.6 CYANIDIUM_SUBGROUP 3 seqs
2.21.2.3.6.266 OTU 3 seqs
prokMSA_id:3479 Cyanidium caldarium str. 14-1-1 red alga -- chloroplast
prokMSA_id:18692 rhodophyte clone CY4 ; plastid plastid product
prokMSA_id:51285 Cyanidium caldarium ; plastid plastid product
2.21.2.4 GREEN_ALGAE_CHLOROPLASTS 7 seqs
2.21.2.4.267 OTU 3 seqs
prokMSA_id:3484 Chlamydomonas reinhardtii green alga -- chloroplast. J01395
prokMSA_id:3486 Yamagishiella unicocca str. X-441 green alga -- chloroplast
prokMSA_id:79762 TPA: Chlamydomonas reinhardtii chloroplast complete genome
2.21.2.4.268 OTU 2 seqs
prokMSA_id:3494 Chlorella mirabilis str. 748-I green alga -- chloroplast. X6
prokMSA_id:51270 clone CRP99-67 
2.21.2.4.269 OTU 1 seq
prokMSA_id:3482 Chlorella ellipsoidea str. IAM-C87 green alga -- chloroplast
2.21.2.4.270 OTU 1 seq
prokMSA_id:3490 Nanochlorum eucaryotum green coccoidal alga -- chloroplast
2.21.2.5 CHAROPHYTA-EMBRYOPHYTA_CHLOROPLASTS 117 seqs
2.21.2.5.271 OTU 1 seq
prokMSA_id:3521 Alnus incana hazel alder -- chloroplast
2.21.2.5.272 OTU 8 seqs
prokMSA_id:3535 Botrychium biternatum eusporangiate fern -- chloroplast
prokMSA_id:3539 Brassica napus forage rape; kale -- chloroplast
prokMSA_id:3549 Ophioglossum engelmannii eusporangiate fern -- chloroplast
prokMSA_id:42014 Calypogeia muelleriana ; chloroplast chloroplast product
prokMSA_id:53867 Lotus japonicus chloroplast complete genome
prokMSA_id:59840 Lotus japonicus chloroplast complete genome
prokMSA_id:69692 Arabidopsis thaliana chloroplast genomic complete strain:Col
prokMSA_id:73572 Arabidopsis thaliana chloroplast complete genome
2.21.2.5.273 OTU 5 seqs
prokMSA_id:3517 Sphagnum palustre bryophyte -- chloroplast
prokMSA_id:3525 Tmesipteris oblanceolata fern allies -- chloroplast
prokMSA_id:3527 Equisetum arvense fern allies -- chloroplast
prokMSA_id:3540 Chara sp. stonewort green alga -- chloroplast. X75519
prokMSA_id:40521 Polytrichum commune ; chloroplast chloroplast product
2.21.2.5.274 OTU 77 seqs
prokMSA_id:3113 Microcystis aeruginosa
prokMSA_id:3114 Microcystis aeruginosa str. NIES87
prokMSA_id:3119 Microcystis aeruginosa
prokMSA_id:3130 Microcystis viridis str. TAC17
prokMSA_id:3131 Microcystis viridis str. TAC78
prokMSA_id:3132 Microcystis aeruginosa str. TAC71
prokMSA_id:3133 Microcystis wesenbergii str. TAC38
prokMSA_id:3134 Microcystis novacekii str. TAC20
prokMSA_id:3135 Microcystis viridis str. NIES102
prokMSA_id:3162 Microcystis sp. str. KND9506
prokMSA_id:3163 Microcystis sp. str. P.R.China
prokMSA_id:3164 Microcystis sp. str. P.R.China
prokMSA_id:3165 Microcystis sp. str. Thailand
prokMSA_id:3166 Microcystis sp. str. Thailand
prokMSA_id:3167 Microcystis aeruginosa str. TAC86
prokMSA_id:3168 Microcystis wesenbergii str. TAC52
prokMSA_id:3169 Microcystis novacekii str. TAC65
prokMSA_id:3170 Microcystis ichthyoblabe str. TAC48
prokMSA_id:3171 Microcystis aeruginosa str. TAC170
prokMSA_id:3177 Microcystis ichthyoblabe
prokMSA_id:3235 Microcystis wesenbergii
prokMSA_id:3236 Microcystis aeruginosa str. NIES98
prokMSA_id:3237 Microcystis wesenbergii str. NIES111
prokMSA_id:3481 Chlorella kessleri str. 211-11g green alga -- chloroplast. X
prokMSA_id:3488 Chlorella kessleri str. 211-11h green alga -- chloroplast. D
prokMSA_id:3511 Cibotium glaucum Hawaiian tree fern -- chloroplast
prokMSA_id:16345 Microcystis aeruginosa strain UWOCC C4 
prokMSA_id:16837 Microcystis sp. 'UWOCC BauldE' strain UWOCC BauldE 
prokMSA_id:17617 Microcystis aeruginosa strain UWOCC M4 
prokMSA_id:17755 Microcystis aeruginosa strain UWOCC MR-B 
prokMSA_id:18186 Microcystis sp. 'UWOCC Q' 
prokMSA_id:18594 Microcystis aeruginosa strain UWOCC AubB1 
prokMSA_id:18622 Microcystis aeruginosa strain UWOCC RID-1 
prokMSA_id:19980 Microcystis flos-aquae strain UWOCC C2 
prokMSA_id:21664 Microcystis aeruginosa strain UWOCC Bauld5A 
prokMSA_id:24627 Microcystis aeruginosa strain UWOCC S-15-b 
prokMSA_id:25608 Microcystis ichthyoblabe 
prokMSA_id:26154 Microcystis sp. strain 269 
prokMSA_id:26766 Microcystis aeruginosa strain UWOCC AK-1 
prokMSA_id:27566 Microcystis sp. 'UWOCC K' 
prokMSA_id:27606 Microcystis aeruginosa 
prokMSA_id:27662 Microcystis aeruginosa strain UWOCC P3 
prokMSA_id:28391 Microcystis wesenbergii 
prokMSA_id:28651 Microcystis aeruginosa strain UWOCC C1 
prokMSA_id:29068 Microcystis novacekii 
prokMSA_id:29230 Microcystis aeruginosa strain UWOCC E7 
prokMSA_id:29257 Microcystis aeruginosa strain UWOCC MR-C 
prokMSA_id:34405 clone CR98-35-75 
prokMSA_id:34524 Microcystis aeruginosa strain UWOCC C5 
prokMSA_id:35129 Microcystis flos-aquae strain UWOCC C3 
prokMSA_id:35467 Microcystis aeruginosa strain UWOCC 84/1 
prokMSA_id:37777 Microcystis sp. strain GL280641 
prokMSA_id:37828 Microcystis aeruginosa strain UWOCC AKGV- 
prokMSA_id:38719 Microcystis sp. 'UWOCC MSU28-1' 
prokMSA_id:39102 Microcystis aeruginosa strain UWOCC 017 
prokMSA_id:39573 Microcystis aeruginosa strain PCC 7820 
prokMSA_id:39760 Microcystis sp. 'UWOCC F' strain UWOCC F 
prokMSA_id:40291 Microcystis flos-aquae strain UWOCC N 
prokMSA_id:40536 Microcystis aeruginosa strain UWOCC MR-A 
prokMSA_id:40548 Microcystis aeruginosa strain UWOCC 006 
prokMSA_id:40647 Microcystis aeruginosa strain UWOCC MR-B 
prokMSA_id:41065 Microcystis aeruginosa strain UWOCC MSU28-2 
prokMSA_id:42696 Microcystis sp. strain NIES104 
prokMSA_id:43227 Microcystis sp. strain 199 
prokMSA_id:43518 Microcystis sp. 'UWOCC BauldB' 
prokMSA_id:45553 Microcystis viridis 
prokMSA_id:47759 Microcystis aeruginosa strain PCC 7806 
prokMSA_id:48796 Microcystis aeruginosa strain UWOCC 019 
prokMSA_id:49423 Microcystis aeruginosa strain UWOCC 024 
prokMSA_id:49574 Microcystis sp. 'UWOCC CBS' strain UWOCC CBS 
prokMSA_id:50935 Microcystis aeruginosa strain UWOCC 023 
prokMSA_id:51805 Microcystis aeruginosa strain UWOCC MR-D 
prokMSA_id:52503 Microcystis aeruginosa strain UWOCC 001 
prokMSA_id:52726 Microcystis aeruginosa strain UWOCC 026 
prokMSA_id:68680 Microcystis aeruginosa 
prokMSA_id:70007 Microcystis sp. strain 130 AJ133170
prokMSA_id:71439 Chlorella kessleri strain 211-11h chloroplast D11346
2.21.2.5.275 OTU 2 seqs
prokMSA_id:3528 Adriana glabrata euphorbialal dicotyledon plant -- chloropla
prokMSA_id:53526 Orobanche minor chloroplast trnVGAC trnIGAU pseudogene trnAU
2.21.2.5.276 OTU 1 seq
prokMSA_id:84627 Lycopersicon esculentum tRNA-Val complete ; complete ; and t
2.21.2.5.277 OTU 1 seq
prokMSA_id:41462 Phaeoceros laevis ; chloroplast chloroplast product
2.21.2.5.278 OTU 1 seq
prokMSA_id:3506 Angiopteris evecta eusporangiate fern -- chloroplast
2.21.2.5.279 OTU 1 seq
prokMSA_id:3526 Lycopodium digitatum fern allies -- chloroplast
2.21.2.5.280 OTU 1 seq
prokMSA_id:3550 Lygodium japonicum leptosporangiate fern -- chloroplast
2.21.2.5.281 OTU 1 seq
prokMSA_id:3552 Ricinis communis castor bean -- chloroplast
2.21.2.5.282 OTU 1 seq
prokMSA_id:3554 Osmunda cinnamomea str. var. fokiensis cinnamon fern --
2.21.2.5.283 OTU 4 seqs
prokMSA_id:3504 Pisum sativum str. cr. Progress No.9 pea; garden pea --
prokMSA_id:3529 Pisum sativum pea; garden pea -- chloroplast
prokMSA_id:33995 P.sativum chloroplast of the single operon
prokMSA_id:35330 Cuscuta europaea chloroplast 
2.21.2.5.284 OTU 7 seqs
prokMSA_id:3559 Cuscuta reflexa dodder plant -- chloroplast
prokMSA_id:48948 Ginkgo biloba ; chloroplast chloroplast product
prokMSA_id:74351 Cuscuta reflexa chloroplast tRNA-ValGAC and 
prokMSA_id:88688 Calycanthus fertilis var. ferax chloroplast complete genome
prokMSA_id:90638 Calycanthus fertilis var. ferax complete chloroplast genome
prokMSA_id:93515 Amborella trichopoda chloroplast genomic complete 
prokMSA_id:94074 Amborella trichopoda chloroplast complete genome
2.21.2.5.285 OTU 1 seq
prokMSA_id:23728 Pellia neesiana ; chloroplast chloroplast product
2.21.2.5.286 OTU 3 seqs
prokMSA_id:3515 Glycine max soy bean -- chloroplast
prokMSA_id:3541 Glycine max str. Maple arrow soy bean -- chloroplast
prokMSA_id:39969 Cycas revoluta ; chloroplast chloroplast product
2.21.2.5.287 OTU 1 seq
prokMSA_id:3544 Conopholis americana flowering plant -- chloroplast
2.21.2.5.288 OTU 1 seq
prokMSA_id:3546 Daucus carota carrot -- chloroplast
2.21.4 GLOEOBACTER_GROUP 5 seqs
2.21.4.289 OTU 5 seqs
prokMSA_id:3563 Gloeobacter violaceus PCC 7421. NONE
prokMSA_id:3564 Gloeobacter violaceus PCC 7421. AF132790
prokMSA_id:3565 Gloeobacter PCC8105 PCC 8105
prokMSA_id:94836 Gloeobacter violaceus PCC 7421 complete genome section 6/16
prokMSA_id:97840 Gloeobacter violaceus complete genome
2.25 FIBROBACTER_AND_ACIDOBACTERIUM 4 seqs
2.25.3 ACIDOBACTERIUM_SUBDIVISION 4 seqs
2.25.3.6 ACBT.CAPSULATUM_GROUP 4 seqs
2.25.3.6.290 OTU 2 seqs
prokMSA_id:3704 Acidobacterium capsulatum str. 161. D26171
prokMSA_id:73903 Acidobacterium capsulatum Acidophilic chemoorganotrophic 
2.25.3.6.291 OTU 2 seqs
prokMSA_id:46444 KF/GS-JG36-31 
prokMSA_id:93694 Acidobacteria clone JG36-GS-132
2.27 SPIROCHETES_AND_RELATIVES 82 seqs
2.27.1 BRACHYSPIRA_GROUP 4 seqs
2.27.1.292 OTU 1 seq
prokMSA_id:3777 Brachyspira aalborgi NCTC 11492
2.27.1.293 OTU 2 seqs
prokMSA_id:30878 adhucomuHca76 
prokMSA_id:77935 Brachyspira ibaraki strain:HIS24/11/99
2.27.1.294 OTU 1 seq
prokMSA_id:37832 adhucomuHca61 
2.27.3 SPIROCHAETA-TREPONEMA-BORRELIA_SUBDIVISION 67 seqs
2.27.3.1 SPI.HALOPHILA_GROUP 5 seqs
2.27.3.1.295 OTU 2 seqs
prokMSA_id:3820 Spirochaeta sp. str. Antarctic DSM 6211. M87055
prokMSA_id:3821 clone BURTON-26
2.27.3.1.296 OTU 1 seq
prokMSA_id:47761 Spirochaeta sp. MERTZ_2CM_106 
2.27.3.1.297 OTU 1 seq
prokMSA_id:79121 Cytophaga sp. BHI80-3 strain BHI80-3
2.27.3.1.298 OTU 1 seq
prokMSA_id:39709 spirochete MT6 
2.27.3.2 TREPONEMA_GROUP 29 seqs
2.27.3.2.1 TRP.BRYANTII_SUBGROUP 6 seqs
2.27.3.2.1.299 OTU 4 seqs
prokMSA_id:3829 Treponema bryantii str. RUS-1 ATCC 33254 . M57737
prokMSA_id:3830 clone RC1
prokMSA_id:3831 clone RF13
prokMSA_id:3833 clone RFN95
2.27.3.2.1.300 OTU 2 seqs
prokMSA_id:3823 Treponema pectinovorum ATCC 33768 . M71237
prokMSA_id:42877 Treponema pectinovorum OMZ831 
2.27.3.2.2 TRP.SOCRANSKII_SUBGROUP 1 seq
2.27.3.2.2.301 OTU 1 seq
prokMSA_id:3862 Treponema Treponema clone RFS12
2.27.3.2.3 TRP.PALLIDUM_SUBGROUP 19 seqs
2.27.3.2.3.302 OTU 9 seqs
prokMSA_id:3949 str. 2-1498
prokMSA_id:3963 Treponema sp. Y08894
prokMSA_id:57738 Treponema sp. 2-1498 
prokMSA_id:57741 Treponema sp. 9-3301 
prokMSA_id:57742 Treponema sp. 5B 
prokMSA_id:57743 Treponema sp. 1A 
prokMSA_id:57744 Treponema sp. 3A 
prokMSA_id:57745 Treponema sp. 4A 
prokMSA_id:88036 Treponema sp. HW-2003 
2.27.3.2.3.303 OTU 1 seq
prokMSA_id:3898 Treponema denticola ATCC 35405
2.27.3.2.3.304 OTU 1 seq
prokMSA_id:86665 Treponema sp. oral clone P2PB_53 P3 
2.27.3.2.3.305 OTU 2 seqs
prokMSA_id:3907 Treponema II:10:D12 str. II:10:D12. AF023030
prokMSA_id:3910 Treponema II:11:U61 str. II:E:U61
2.27.3.2.3.306 OTU 1 seq
prokMSA_id:3912 Treponema II:11:C57 str. II:11:C57
2.27.3.2.3.307 OTU 2 seqs
prokMSA_id:3895 Spirochaeta zuelzerae ATCC 19044 . M88725
prokMSA_id:3913 Treponema II:H:D11 str. II:H:D11
2.27.3.2.3.308 OTU 1 seq
prokMSA_id:94550 Treponema putidum strain OMZ 844 
2.27.3.2.3.309 OTU 1 seq
prokMSA_id:92384 Treponema genomosp. P2 clone P2PB_60 
2.27.3.2.3.310 OTU 1 seq
prokMSA_id:46681 AA14 
2.27.3.2.4 SPI.STENOSTREPTA_SUBGROUP 2 seqs
2.27.3.2.4.311 OTU 1 seq
prokMSA_id:91461 clone SR_FBR_E2 
2.27.3.2.4.312 OTU 1 seq
prokMSA_id:3977 Treponema Treponema clone RFS1
2.27.3.2.6 STR.MPSP16_SUBGROUP 1 seq
2.27.3.2.6.313 OTU 1 seq
prokMSA_id:36858 spirochete Nc15 
2.27.3.5 BORRELIA_GROUP 33 seqs
2.27.3.5.314 OTU 28 seqs
prokMSA_id:4155 Borrelia persica str. UESV/340
prokMSA_id:4205 Borrelia duttoni. U28503
prokMSA_id:4221 Borrelia sp. str. FCB-1. L37837
prokMSA_id:4229 Borrelia duttonii str. Ku
prokMSA_id:4230 Borrelia duttonii str. Ly
prokMSA_id:4231 Borrelia duttonii str. La
prokMSA_id:4232 Borrelia duttonii str. Ma
prokMSA_id:4234 Borrelia parkeri str. M3001
prokMSA_id:4235 Borrelia turicatae str. M2007
prokMSA_id:4241 Borrelia hermsii str. HS1T ATCC 35209
prokMSA_id:4242 Borrelia crocidurae str. UESV/ACH
prokMSA_id:4243 Borrelia crocidurae str. UESV/626BAN
prokMSA_id:4244 Borrelia crocidurae str. UESV/917BAR
prokMSA_id:4245 Borrelia crocidurae str. UESV/1040DAK 24
prokMSA_id:4246 Borrelia crocidurae str. UESV/1045DAK 33
prokMSA_id:4247 Borrelia crocidurae str. UESV/MER
prokMSA_id:4248 Borrelia crocidurae str. UESV/1043DAK 28
prokMSA_id:4249 Borrelia crocidurae str. UESV/523SIS
prokMSA_id:4250 Borrelia crocidurae str. UESV/1096TEN
prokMSA_id:4251 Borrelia duttonii str. UESV/117DUTT
prokMSA_id:4252 Borrelia duttonii str. UR/BD94MIT
prokMSA_id:4253 Borrelia duttonii str. UESV/334RWA
prokMSA_id:4254 Borrelia hispanica str. UESV/246
prokMSA_id:27842 Borrelia parkeri isolate 6230 complete 
prokMSA_id:32451 Borrelia parkeri 
prokMSA_id:33625 Borrelia sp. EFL-S0100110 
prokMSA_id:50797 Borrelia parkeri isolate 6232 complete 
prokMSA_id:79116 Borrelia sp. TXW-1 
2.27.3.5.315 OTU 1 seq
prokMSA_id:4212 Borrelia valaisiana str. CKA1
2.27.3.5.316 OTU 2 seqs
prokMSA_id:4269 Borrelia japonica str. IKA2
prokMSA_id:4298 Borrelia burgdorferi str. CA2
2.27.3.5.317 OTU 1 seq
prokMSA_id:79174 Borrelia sp. SCGT-10 
2.27.3.5.318 OTU 1 seq
prokMSA_id:4182 Borrelia anserina str. ES-1
2.27.4 LEPTOSPIRA_SUBDIVISION 11 seqs
2.27.4.1 LEPTOSPIRA_GROUP 11 seqs
2.27.4.1.1 LPS.INTERROGANS_SUBGROUP 4 seqs
2.27.4.1.1.319 OTU 4 seqs
prokMSA_id:4342 Leptospira weilii str. Worsfold isolate WA 52. U12677
prokMSA_id:4351 Leptospira weilii str. Celledoni isolate WA 45 ATCC 43285 . 
prokMSA_id:4354 Leptospira santarosai str. LT81 isolate SA39. U12672
prokMSA_id:65605 Leptospira weilii strain Ecochallenge 
2.27.4.1.2 LPS.BIFLEXA_SUBGROUP 7 seqs
2.27.4.1.2.320 OTU 7 seqs
prokMSA_id:4373 Leptospira biflexa subsp. Tororo str. mutant 1/1993
prokMSA_id:4375 Leptospira biflexa subsp. Tororo str. mutant 2/1994
prokMSA_id:4376 Leptospira biflexa subsp. Tororo str. mutant 3/1993
prokMSA_id:4377 Leptospira biflexa subsp. Tororo str. mutant 3/1994
prokMSA_id:4378 Leptospira biflexa subsp. Tororo str. mutant 6/1993
prokMSA_id:4379 Leptospira biflexa subsp. Tororo str. mutant 6/1994
prokMSA_id:4380 Leptospira biflexa str. Tororo parent strain
2.28 PROTEOBACTERIA 4467 seqs
2.28.1 ALPHA_SUBDIVISION 1207 seqs
2.28.1.1 RDV.SALINARUM_GROUP 1 seq
2.28.1.1.321 OTU 1 seq
prokMSA_id:95041 clone A56 complete 
2.28.1.2 RHODOPILA_GROUP 109 seqs
2.28.1.2.3 RPL.GLOBIFORMIS_SUBGROUP 1 seq
2.28.1.2.3.322 OTU 1 seq
prokMSA_id:4410 Rhodopila globiformis str. 7950 DSM 161
2.28.1.2.4 ABA.ACETI_SUBGROUP 78 seqs
2.28.1.2.4.323 OTU 1 seq
prokMSA_id:36562 alpha clone SM2C02 
2.28.1.2.4.324 OTU 1 seq
prokMSA_id:4458 Gluconacetobacter diazotrophicus ATCC 49037
2.28.1.2.4.325 OTU 2 seqs
prokMSA_id:4426 Acidomonas methanolica str. MB 58 IMET 10945
prokMSA_id:4470 Acidomonas methanolica str. MB 58 IMET 10945
2.28.1.2.4.326 OTU 71 seqs
prokMSA_id:4419 Acetobacter intermedius str. TF2 DSM 11804 . Y14694
prokMSA_id:4421 Acetobacter pomorum str. LTH 2458 DSM 11825 . AJ001632
prokMSA_id:4423 Gluconacetobacter hansenii NCIMB 8746
prokMSA_id:4425 Acetobacter PA2.2 str. PA2.2
prokMSA_id:4429 Gluconacetobacter liquefaciens IFO 12388
prokMSA_id:4430 Gluconacetobacter sacchari str. IF9645. AF127413
prokMSA_id:4431 Gluconacetobacter sacchari str. IF2-6
prokMSA_id:4432 Gluconacetobacter sacchari str. IF9701. AF127411
prokMSA_id:4440 str. SRI1941. AF127400
prokMSA_id:4441 Gluconacetobacter liquefaciens str. SRI1994. AF127395
prokMSA_id:4443 Gluconacetobacter liquefaciens str. SRI1957. AF127393
prokMSA_id:4449 Acetobacter oboediens str. LTH 2460 DSM 11826 . AJ001631
prokMSA_id:4450 Acetobacter intermedius str. ZIM B025 JKD. AJ012697
prokMSA_id:4452 Acetobacter aceti JCM 7641
prokMSA_id:4455 Acetobacter europaeus str. JK2. Y15289
prokMSA_id:4463 Gluconacetobacter xylinus subsp. xylinus NCIMB 11664
prokMSA_id:4465 Gluconacetobacter xylinus subsp. sucrofermentans str. BPR200
prokMSA_id:4466 Acetobacter ITDI2.1 str. ITDI2.1
prokMSA_id:4467 Acetobacter europaeus str. ZIM B028 V3. AJ012698
prokMSA_id:4469 Acetobacter aceti NCIMB 8621
prokMSA_id:18427 Acetobacter indonesiensis strain:LMG 1571
prokMSA_id:21095 Gluconacetobacter entanii strain LTH4560 AJ251110
prokMSA_id:22182 Acetobacter estunensis AB032349
prokMSA_id:22265 Acetobacter roseisyzygii strain:22F-1B
prokMSA_id:23292 Acetobacter sp. DOR 
prokMSA_id:25708 Acetobacter indonesiensis strain:1B-M19D
prokMSA_id:27422 Acetobacter tropicalis strain:Y-1BM
prokMSA_id:28838 Acetobacter roseisyzygii strain:9H-2
prokMSA_id:29322 Acetobacter cibinongensis strain:4H-1
prokMSA_id:34202 Acetobacter tropicalis strain:NRIC 0312 isolate:No.3 AB03235
prokMSA_id:34622 Acetobacter tropicalis strain:NRIC 0312 isolate:No.39 AB0323
prokMSA_id:36976 Acetobacter azotocaptans 
prokMSA_id:38754 Acetobacter orientalis strain:B-7SC
prokMSA_id:39658 Acetobacter orientalis strain:1B-M18A
prokMSA_id:41554 Acetobacter cibinongensis strain:1BM-18C
prokMSA_id:48133 Acetobacter roseisyzygii strain:1B-M19C
prokMSA_id:48935 Acetobacter orientalis strain:4B-S16D
prokMSA_id:51781 Acetobacter orleanensis 
prokMSA_id:56023 Acetobacter malorum strain LMG 1746
prokMSA_id:56605 Gluconacetobacter sp. LMG 1689 AJ316550
prokMSA_id:58362 Acetobacter orleanensis strain LMG 1583
prokMSA_id:58363 Acetobacter lovaniensis strain LMG 1617
prokMSA_id:58364 Acetobacter tropicalis strain LMG 1663
prokMSA_id:58365 Acetobacter peroxydans strain LMG 1633
prokMSA_id:58366 Acetobacter pomorum strain LMG 18848
prokMSA_id:58367 Acetobacter pasteurianus strain LMG 1629
prokMSA_id:58368 Acetobacter cerevisiae strain LMG 1625
prokMSA_id:58369 Acetobacter indonesiensis strain LMG 1588
prokMSA_id:58371 Acetobacter aceti strain LMG 1531
prokMSA_id:58372 Acetobacter estunensis strain LMG 1572
prokMSA_id:58373 Acetobacter estunensis strain LMG 1626
prokMSA_id:65495 Acetobacter pasteurianus strain:NCI 1193
prokMSA_id:70289 A.xylinum 
prokMSA_id:71473 A.hansenii 
prokMSA_id:71559 Gluconacetobacter persimmonensis 
prokMSA_id:72097 A.liquefaciens 
prokMSA_id:72244 A.europaeus 
prokMSA_id:73040 Acetobacter sp. strain LMG 1582
prokMSA_id:73674 A.diazotrophicus 
prokMSA_id:82919 Gluconacetobacter diazotrophicus clone PAl3 
prokMSA_id:83463 Gluconacetobacter diazotrophicus clone UAP-Ac7 
prokMSA_id:84352 Gluconacetobacter diazotrophicus clone CFNE-550 
prokMSA_id:85095 Gluconacetobacter diazotrophicus clone UAP-Cf51 
prokMSA_id:85459 Gluconacetobacter diazotrophicus clone 4-02 
prokMSA_id:85491 Gluconacetobacter diazotrophicus clone UAP-Ac10 
prokMSA_id:86451 Gluconacetobacter diazotrophicus clone CFN-Cf52 
prokMSA_id:92396 Acetobacter pasteurianus isolate:OR56-1
prokMSA_id:92514 Gluconacetobacter liquefaciens isolate:CJ121-1
prokMSA_id:92777 Acetobacter orientalis isolate:SF17-1 AB117966
prokMSA_id:96398 Gluconacetobacter sp. DST GL_02 
prokMSA_id:98382 Gluconacetobacter sp. DST GL_01 
2.28.1.2.4.327 OTU 1 seq
prokMSA_id:4420 Acetobacter sp
2.28.1.2.4.328 OTU 1 seq
prokMSA_id:4442 Acetobacter sp. str. SRI1939
2.28.1.2.4.329 OTU 1 seq
prokMSA_id:4454 Gluconacetobacter europaeus str. DES11 DSM 6160
2.28.1.2.5 ACDP.CRYPTUM_SUBGROUP 30 seqs
2.28.1.2.5.330 OTU 1 seq
prokMSA_id:43037 WD248 clone WD248
2.28.1.2.5.331 OTU 1 seq
prokMSA_id:4497 Acidiphilium sp. str. C-1
2.28.1.2.5.332 OTU 7 seqs
prokMSA_id:4479 Acidiphilium acidophilum ATCC 27807
prokMSA_id:4480 Acidiphilium angustum ATCC 35903
prokMSA_id:4484 Acidiphilium rubrum ATCC 35905
prokMSA_id:4486 Acidiphilium sp. str. St1-5
prokMSA_id:4487 Acidiphilium sp. str. St1-7
prokMSA_id:40217 Acidiphilium sp. NO-17 
prokMSA_id:51452 Acidiphilium sp. NO-13 
2.28.1.2.5.333 OTU 7 seqs
prokMSA_id:4491 Acidocella aminolytica str. 101 JCM 8796. D30771
prokMSA_id:4492 Acidocella sp. str. GS19h
prokMSA_id:22545 Acidocella sp. LGS-3 
prokMSA_id:39575 Acidocella sp. NO-12 
prokMSA_id:50531 Acidocella sp. WJB-3 
prokMSA_id:53994 WD238 clone WD238
prokMSA_id:70861 Acidocella sp. IS10 AF531477
2.28.1.2.5.334 OTU 12 seqs
prokMSA_id:4477 Acidiphilium organovorum ATCC 43141
prokMSA_id:4493 Acidiphilium multivorum AIU 301
prokMSA_id:4494 Acidiphilium cryptum DSM 2389. Y18445
prokMSA_id:4495 Acidiphilium multivorum AIU 303
prokMSA_id:4496 Acidiphilium MBIC4287 str. MBIC4287
prokMSA_id:4502 Acidiphilium cryptum ATCC 33463
prokMSA_id:4503 Acidiphilium cryptum str. Kuesel IFV
prokMSA_id:4505 Acidiphilium sp. str. GS18h
prokMSA_id:28295 Acidiphilium sp. NO-14 
prokMSA_id:47077 Acidiphilium sp. SJH 
prokMSA_id:70949 Acidiphilium sp. MPH2 AF352793
prokMSA_id:72048 Acidiphilium sp. MPH3 AF352794
2.28.1.2.5.335 OTU 2 seqs
prokMSA_id:4474 Acidocella facilis str. PW2 ATCC 35904
prokMSA_id:45483 Acidocella sp. D86510
2.28.1.4 AZOSPIRILLUM_GROUP 67 seqs
2.28.1.4.1 R.RUBRUM_SUBGROUP 22 seqs
2.28.1.4.1.336 OTU 21 seqs
prokMSA_id:4539 unnamed organism. AF104473
prokMSA_id:4594 Oceanospirillum pusillum IFO 13613
prokMSA_id:4612 Pedomicrobium australicum IFAM ST-1306
prokMSA_id:4615 Pedomicrobium sp. ACM 3067. X97695
prokMSA_id:4617 Pedomicrobium manganicum ACM 3038 . X97691
prokMSA_id:4630 Hyphomicrobium hollandicum IFAM KB-677 . Y14303
prokMSA_id:4632 Hyphomicrobium zavarzinii IFAM ZV-622
prokMSA_id:4636 Hyphomicrobium vulgare str. MC-750 IFAM MC-750
prokMSA_id:4637 Hyphomicrobium zavarzinii str. ZV-580
prokMSA_id:4641 str. US-353. U06473
prokMSA_id:27853 alpha MERTZ_2CM_49 
prokMSA_id:27957 Marine SCRIPPS_94 
prokMSA_id:32425 alpha MERTZ_0CM_187 
prokMSA_id:35557 Thalassospira lucentensis 
prokMSA_id:43487 alphaproteobacterium 4alphavs17 strain alphavs17
prokMSA_id:52859 sludge A27b 
prokMSA_id:79281 alpha clone P_wp0211 
prokMSA_id:79518 Alpha UMB1A 
prokMSA_id:80090 Marine B-4 
prokMSA_id:85257 Alpha CJ11073 
prokMSA_id:97510 clone mv13.4 
2.28.1.4.1.338 OTU 1 seq
prokMSA_id:4508 Rhodospirillum rubrum str. ATH 1.1.1; S.1 ATCC 11170
2.28.1.4.2 MAG.GRYPHISWALDENSE_SUBGROUP 25 seqs
2.28.1.4.2.339 OTU 4 seqs
prokMSA_id:58087 Ellin361 
prokMSA_id:58109 Ellin333 
prokMSA_id:71781 Ellin331 AF498713
prokMSA_id:93885 alpha clone KCM-B-42
2.28.1.4.2.340 OTU 1 seq
prokMSA_id:4526 Magnetospirillum sp. str. MGT-1
2.28.1.4.2.341 OTU 4 seqs
prokMSA_id:5800 Rhodobacter blasticus ATCC 33485 . D16429
prokMSA_id:5802 Rhodobacter TCRI 14 str. TCRI 14
prokMSA_id:21409 SA28 
prokMSA_id:25169 SA27 
2.28.1.4.2.342 OTU 2 seqs
prokMSA_id:90230 alpha clone MBMPE49
prokMSA_id:90336 alpha clone MBMPE39
2.28.1.4.2.343 OTU 11 seqs
prokMSA_id:4518 Magnetospirillum magnetotacticum. M58171
prokMSA_id:4519 Magnetospirillum magnetotacticum DSM 3856
prokMSA_id:4522 Magnetospirillum sp. str. MSM-6
prokMSA_id:4524 Magnetospirillum magnetotacticum DSM 3856
prokMSA_id:4525 Magnetospirillum sp. str. AMB-1
prokMSA_id:4529 Dechlorospirillum WD str. WD
prokMSA_id:4534 Phaeospirillum molischianum ATCC 14031 . M59067
prokMSA_id:4535 Phaeospirillum fulvum str. 1360 NCIMB 11762 . D14433
prokMSA_id:4540 Phaeospirillum fulvum str. 1360 ATCC 15798. M59065
prokMSA_id:35227 Phenol-degrading denitrifying spirillum CC-26 
prokMSA_id:68789 Phaeospirillum sp. MPA1 
2.28.1.4.2.344 OTU 1 seq
prokMSA_id:50004 alpha clone BIfdii21
2.28.1.4.2.345 OTU 1 seq
prokMSA_id:47123 alpha kpc47rc 
2.28.1.4.2.346 OTU 1 seq
prokMSA_id:94247 LS-2 
2.28.1.4.4 AZS.LIPOFERUM_SUBGROUP 20 seqs
2.28.1.4.4.347 OTU 1 seq
prokMSA_id:63342 Azospirillum sp. Mat2-1a 
2.28.1.4.4.348 OTU 1 seq
prokMSA_id:32646 alpha MERTZ_2CM_147 
2.28.1.4.4.349 OTU 1 seq
prokMSA_id:32486 WD278 clone WD278
2.28.1.4.4.350 OTU 1 seq
prokMSA_id:32841 Defluvicoccus vanus 
2.28.1.4.4.351 OTU 2 seqs
prokMSA_id:46989 Alpha OM25 
prokMSA_id:72555 alpha CHAB-III-8 5' AJ240913
2.28.1.4.4.352 OTU 3 seqs
prokMSA_id:4546 Azospirillum sp. str. ASP-1
prokMSA_id:4549 Azospirillum sp. str. 4 AZ DSM 4834
prokMSA_id:58862 UNSW7 
2.28.1.4.4.353 OTU 1 seq
prokMSA_id:96386 clone D101 
2.28.1.4.4.355 OTU 1 seq
prokMSA_id:94484 clone A6 complete 
2.28.1.4.4.356 OTU 1 seq
prokMSA_id:4575 str. HD-1
2.28.1.4.4.357 OTU 1 seq
prokMSA_id:52333 alpha MERTZ_2CM_62 
2.28.1.4.4.358 OTU 1 seq
prokMSA_id:56633 clone cvf65019 
2.28.1.4.4.359 OTU 3 seqs
prokMSA_id:25641 sludge A3 
prokMSA_id:39310 clone C26-27 
prokMSA_id:96049 clone mv13.5 
2.28.1.4.4.360 OTU 1 seq
prokMSA_id:53437 clone CR98-35-01 
2.28.1.4.4.361 OTU 1 seq
prokMSA_id:58733 Azospirillum sp. Arm2-2 
2.28.1.4.4.362 OTU 1 seq
prokMSA_id:4545 Azospirillum irakense str. KBC1
2.28.1.6 RHIZOBIUM-AGROBACTERIUM_GROUP 560 seqs
2.28.1.6.1 STA.STELLULATA_SUBGROUP 13 seqs
2.28.1.6.1.363 OTU 1 seq
prokMSA_id:4609 str. HTB015
2.28.1.6.1.364 OTU 1 seq
prokMSA_id:20146 ECS12 
2.28.1.6.1.365 OTU 11 seqs
prokMSA_id:4599 str. MBIC3993
prokMSA_id:4604 Agrobacterium stellulatum IAM 12614. D88520
prokMSA_id:4606 unnamed organism -- macronuclear. Y10914
prokMSA_id:4607 unnamed organism -- macronuclear
prokMSA_id:4610 str. MBIC1535
prokMSA_id:35018 Alpha 34619 
prokMSA_id:36327 Alpha F0723 
prokMSA_id:70630 Unknown marine alpha JP22.1 AY007682
prokMSA_id:88655 Stappia sp. M8 
prokMSA_id:91003 K2-26 
prokMSA_id:92008 K2-29 
2.28.1.6.2 HYP.DENITRIFICANS_SUBGROUP 5 seqs
2.28.1.6.2.366 OTU 2 seqs
prokMSA_id:9022 Shewanella benthica str. PT99. AB003189
prokMSA_id:94851 clone A33 
2.28.1.6.2.367 OTU 2 seqs
prokMSA_id:4616 str. JTB131
prokMSA_id:48953 alpha MERTZ_0CM_183 
2.28.1.6.2.368 OTU 1 seq
prokMSA_id:90031 Hyphomicrobium sulfonivorans strain 25S complete 
2.28.1.6.3 HYP.ZAVARZINII_SUBGROUP 1 seq
2.28.1.6.3.369 OTU 1 seq
prokMSA_id:4638 Pedomicrobium fusiforme DSM 5304
2.28.1.6.8 BL.VIRIDIS_ASSEMBLAGE 35 seqs
2.28.1.6.8.370 OTU 2 seqs
prokMSA_id:4718 Rhodoplanes Tok2tar1 str. Tok2tar1. AF077729
prokMSA_id:63877 Rhodopseudomonas cryptolactis complete 
2.28.1.6.8.371 OTU 1 seq
prokMSA_id:4663 Xanthobacter agilis str. SA35
2.28.1.6.8.372 OTU 4 seqs
prokMSA_id:4649 Azorhizobium caulinodans str. MAR 1568 ORS 571 . D13948
prokMSA_id:4704 Azorhizobium caulinodans str. MAR 1568 ORS 571
prokMSA_id:4708 Azorhizobium caulinodans str. MAR 1568 ORS 571
prokMSA_id:4730 Azorhizobium caulinodans str. MAR 1568 LMG 6465
2.28.1.6.8.373 OTU 2 seqs
prokMSA_id:76548 clone:KSS3
prokMSA_id:93584 alpha clone JG36-GS-46
2.28.1.6.8.374 OTU 5 seqs
prokMSA_id:20255 Azorhizobium sp. Br5401 
prokMSA_id:36919 ECS14 
prokMSA_id:43219 Alpha 76712 
prokMSA_id:64286 Alpha LMG 20591 
prokMSA_id:90480 Azorhizobium sp. F1 AY301011
2.28.1.6.8.376 OTU 20 seqs
prokMSA_id:4654 Xanthobacter autotrophicus str. 7c
prokMSA_id:4655 Xanthobacter autotrophicus str. T101
prokMSA_id:4656 Xanthobacter autotrophicus str. T102
prokMSA_id:4658 Xanthobacter autotrophicus str. JW33
prokMSA_id:4661 Thiobacillus novellus IAM 12100. D32247
prokMSA_id:4671 Xanthobacter flavus str. 301
prokMSA_id:4673 Xanthobacter flavus str. H4-14
prokMSA_id:4674 Xanthobacter flavus str. JW/KR-1
prokMSA_id:4675 Xanthobacter flavus str. JW/KR-2
prokMSA_id:4676 Xanthobacter flavus str. JW/KR-E1
prokMSA_id:4700 Xanthobacter tagetidis str. TagT2C
prokMSA_id:5066 Rhodobium orientis str. MB312 JCM 9337
prokMSA_id:5200 clone SJA-53. AJ009467
prokMSA_id:5580 Brevundimonas alba str. CB88 DSM 4736
prokMSA_id:22038 Xanthobacter sp. MN 45.1 isolate MN 45.1
prokMSA_id:60723 Monochloroacetic-acid-degrading MCAA1 
prokMSA_id:62751 Xanthobacter aminooxidans 
prokMSA_id:68682 Xanthobacter sp. INA43/2-2 strain INA43/2-2
prokMSA_id:70971 Rhodoplanes elegans 
prokMSA_id:90457 Xanthobacter sp. COX 
2.28.1.6.8.377 OTU 1 seq
prokMSA_id:4713 Rhodoplanes elegans str. AS130
2.28.1.6.9 MSI.TRICHOSPORIUM_SUBGROUP 31 seqs
2.28.1.6.9.378 OTU 29 seqs
prokMSA_id:4738 Methylocystis parvus
prokMSA_id:4741 Methylocystis LW5 str. LW5
prokMSA_id:4748 str. AML-A6
prokMSA_id:4749 str. LR1
prokMSA_id:27344 Methylocystis parvus 
prokMSA_id:28443 Methylocystis sp. SV97 strain SV97
prokMSA_id:32547 Methylosinus pucelana 
prokMSA_id:36920 clone LO13.7 
prokMSA_id:55280 Methylocystis sp. SC2 strain SC2
prokMSA_id:55990 Methylocystis sp. WRS complete 
prokMSA_id:56422 Methylocystis echinoides strain IMET 10491
prokMSA_id:64197 Methylocystis parvus strain 57
prokMSA_id:64198 Methylocystis sp. 82 strain 82
prokMSA_id:64199 Methylocystis sp. KS33 strain KS33
prokMSA_id:64204 Methylocystis sp. 39 strain 39
prokMSA_id:64205 Methylocystis sp. 10 strain 10
prokMSA_id:64209 Methylocystis sp. KS12 strain KS12
prokMSA_id:64210 Methylocystis sp. KS8a strain KS8a
prokMSA_id:64217 Methylocystis sp. Pi5/4 strain Pi5/4
prokMSA_id:64218 Methylocystis sp. 50/42a strain 50/42a
prokMSA_id:64223 Methylocystis parvus strain 81
prokMSA_id:64224 Methylocystis sp. 51 strain 51
prokMSA_id:64227 Methylocystis sp. IMET 10486 strain IMET 10486
prokMSA_id:64230 Methylocystis sp. 495/4 strain 495/4
prokMSA_id:64231 Methylocystis sp. 62/12 strain 62/12
prokMSA_id:68635 II methanotroph CSC-1 
prokMSA_id:72367 Methylocystis sp. 50/54 strain 50/54 AJ458510
prokMSA_id:88700 HOClCi42 
prokMSA_id:89125 HOClCi39 
2.28.1.6.9.379 OTU 1 seq
prokMSA_id:64202 Methylocystis sp. F10V2a strain F10V2a
2.28.1.6.9.380 OTU 1 seq
prokMSA_id:4737 Methylosinus sporium str. provided by Y.Trotsenko
2.28.1.6.10 BEI.INDICA_SUBGROUP 5 seqs
2.28.1.6.10.381 OTU 1 seq
prokMSA_id:27469 clone RB7C5 
2.28.1.6.10.382 OTU 3 seqs
prokMSA_id:4714 clone WCHB1-55
prokMSA_id:41272 clone CR99-2-43 
prokMSA_id:51286 alpha UP2 
2.28.1.6.10.383 OTU 1 seq
prokMSA_id:4764 clone DA067
2.28.1.6.11 METHYLOBACTERIA_SUBGROUP 28 seqs
2.28.1.6.11.2 MLB.RADIOTOLERANS_SUBGROUP 6 seqs
2.28.1.6.11.2.384 OTU 3 seqs
prokMSA_id:24178 Methylobacterium sp. 1722a 
prokMSA_id:58322 Iron-oxidizing acidophile Y005 
prokMSA_id:81189 Methylobacterium fujisawaense 
2.28.1.6.11.2.385 OTU 1 seq
prokMSA_id:4803 str. MBIC3401
2.28.1.6.11.2.386 OTU 1 seq
prokMSA_id:4789 Blastobacter sp. str. PC30.39
2.28.1.6.11.2.387 OTU 1 seq
prokMSA_id:4804 Blastobacter sp. str. BF15
2.28.1.6.11.4 BO.THIOOXIDANS_SUBGROUP 22 seqs
2.28.1.6.11.4.388 OTU 2 seqs
prokMSA_id:4819 clone SJA-9
prokMSA_id:17833 clone CRP99-59 
2.28.1.6.11.4.389 OTU 20 seqs
prokMSA_id:4810 Bosea thiooxidans str. BI-42 DSM 9653 . X81044
prokMSA_id:4811 Afipia genosp. 7 str. G8643
prokMSA_id:4812 Afipia genosp. 8 str. G8569
prokMSA_id:4813 Afipia genosp. 9 str. G8994
prokMSA_id:4817 Afipia genosp. 9 str. G8990
prokMSA_id:4822 Bosea thiooxidans str. BI-42 DSM 9653
prokMSA_id:17030 Bosea sp. MN 51a isolate MN 51a
prokMSA_id:23471 Alpha A7-2 3'- 
prokMSA_id:24179 Alpha 34635 
prokMSA_id:25399 Alpha 34620 
prokMSA_id:27298 Alpha 34649 
prokMSA_id:29196 Alpha 34614 
prokMSA_id:40437 Alpha A7-2 complete 
prokMSA_id:47211 Alpha 63287 
prokMSA_id:47963 Alpha 63286 
prokMSA_id:48650 Bosea mexicana 
prokMSA_id:50602 Afipia sp. CZ64 isolate CZ64
prokMSA_id:56322 Bosea thiooxidans strain BI-42 
prokMSA_id:68714 clone p59 AF484050
prokMSA_id:69677 Bosea sp. 7F 
2.28.1.6.12 BRADYRHIZOBIUM_SUBGROUP 108 seqs
2.28.1.6.12.5 RPS.PALUSTRIS_SUBGROUP 68 seqs
2.28.1.6.12.5.390 OTU 4 seqs
prokMSA_id:4866 Rhodopseudomonas palustris str. ATH 2.1.6 ATCC 17001
prokMSA_id:58038 Afipia massiliensis 
prokMSA_id:98099 clone SPCUL1A1 
prokMSA_id:98387 clone SPCUL1A2 
2.28.1.6.12.5.391 OTU 61 seqs
prokMSA_id:4719 Rhodoplanes Wai3R3 str. Wai3R3
prokMSA_id:4721 clone DA122. Y12598
prokMSA_id:4852 Afipia genosp. 5 str. F8014. U87771
prokMSA_id:4854 Rhodopseudomonas palustris. X87279
prokMSA_id:4856 Rhodopseudomonas palustris str. F7-1
prokMSA_id:4859 Rhodopseudomonas palustris
prokMSA_id:4860 Afipia genosp. 3 str. G5357
prokMSA_id:4861 Rhodopseudomonas palustris str. No.7
prokMSA_id:4862 Rhodopseudomonas palustris str. No.7
prokMSA_id:4863 Rhodopseudomonas palustris str. No.7
prokMSA_id:4864 Rhodopseudomonas palustris str. ATH 2.1.6 ATCC 17001
prokMSA_id:4937 Bradyrhizobium japonicum str. MAR 1491 USDA 110
prokMSA_id:4938 Bradyrhizobium japonicum IAM 12608
prokMSA_id:4966 Bradyrhizobium japonicum USDA 94
prokMSA_id:4980 Bradyrhizobium japonicum. X87272
prokMSA_id:4990 Bradyrhizobium japonicum
prokMSA_id:4995 Bradyrhizobium Mm1-3 str. Mm1-3
prokMSA_id:4996 Bradyrhizobium Pe4 str. Pe4
prokMSA_id:19182 Bradyrhizobium sp. strain Ec3-3 
prokMSA_id:20976 clone GIF7 
prokMSA_id:22219 WD275 clone WD275
prokMSA_id:23514 Bradyrhizobium sp. strain Rp2-1 
prokMSA_id:28377 clone CR98-24-49 
prokMSA_id:28497 Rhodopseudomonas sp. B29 
prokMSA_id:33185 Bradyrhizobium japonicum strain DASA38025 
prokMSA_id:33324 Bradyrhizobium sp. bfs1b 
prokMSA_id:43234 Bradyrhizobium japonicum strain:NA6545
prokMSA_id:52053 Green Bay ferromanganous micronodule MNF4 
prokMSA_id:55721 Bradyrhizobium japonicum strain USDA 122 ; tRNA-Ile and tRNA
prokMSA_id:55787 Bradyrhizobium japonicum strain USDA 125 ; tRNA-Ile and tRNA
prokMSA_id:56515 Bradyrhizobium japonicum strain USDA 129 ; tRNA-Ile and tRNA
prokMSA_id:57508 Bradyrhizobium sp. CCBAU 23046 
prokMSA_id:60583 clone B15 
prokMSA_id:62337 Rhodopseudomonas sp. HMD88 
prokMSA_id:62340 Rhodopseudomonas palustris isolate:VA2-2
prokMSA_id:63879 Rhodoplanes sp. HA17 complete 
prokMSA_id:64291 Bradyrhizobium sp. ORS 3259 
prokMSA_id:67702 Bradyrhizobium japonicum isolate:NA6086
prokMSA_id:67703 Bradyrhizobium japonicum isolate:NA6080
prokMSA_id:67704 Bradyrhizobium japonicum isolate:NA6154
prokMSA_id:67706 Bradyrhizobium japonicum isolate:NA6116
prokMSA_id:68336 Rhodoplanes elegans strain OK5R2b 
prokMSA_id:68817 Bradyrhizobium japonicum strain USDA 92 ; tRNA-Ile and tRNA-
prokMSA_id:68818 Bradyrhizobium japonicum strain USDA 91 ; tRNA-Ile and tRNA-
prokMSA_id:69231 Bradyrhizobium sp. STM1470 
prokMSA_id:69446 Bradyrhizobium sp. STM1469 
prokMSA_id:69495 Bradyrhizobium japonicum strain USDA 62 ; tRNA-Ile and tRNA-
prokMSA_id:69802 Bradyrhizobium sp. STM1471 
prokMSA_id:74750 Bradyrhizobium japonicum strain USDA 126 ; tRNA-Ile and tRNA
prokMSA_id:74891 clone:TSS7 AB075170
prokMSA_id:76302 Bradyrhizobium japonicum complete genome strain: USDA110 sec
prokMSA_id:77279 Bradyrhizobium japonicum strain SEMIA 5080 complete 
prokMSA_id:77282 Bradyrhizobium japonicum strain SEMIA 586 complete 
prokMSA_id:80752 Bradyrhizobium sp. Cp5-3 
prokMSA_id:81923 Bradyrhizobium sp. ORS206 
prokMSA_id:87012 Bradyrhizobium sp. NK-3 
prokMSA_id:87593 Bradyrhizobium sp. Kus-6 
prokMSA_id:87812 Bradyrhizobium sp. Glm-8 
prokMSA_id:87872 Bradyrhizobium sp. Leb-14 
prokMSA_id:90709 Bradyrhizobium sp. Dr4a.7 
prokMSA_id:97561 Alpha Shinshu-th1 
2.28.1.6.12.5.392 OTU 2 seqs
prokMSA_id:4971 Afipia broomeae str. G5958. U87761
prokMSA_id:21255 Rhodopseudomonas palustris 
2.28.1.6.12.5.393 OTU 1 seq
prokMSA_id:4851 Rhodopseudomonas palustris str. ATH 2.1.6 ATCC 17001
2.28.1.6.12.8 BDR.LUPINI_SUBGROUP 33 seqs
2.28.1.6.12.8.394 OTU 1 seq
prokMSA_id:29213 Bradyrhizobium japonicum strain MSDJ 5605 
2.28.1.6.12.8.395 OTU 10 seqs
prokMSA_id:4835 Nitrobacter TH21 str. TH21
prokMSA_id:17737 Nitrobacter winogradskyi 
prokMSA_id:24441 alpha clone BIaii16
prokMSA_id:25095 Nitrobacter sp. PJN1 
prokMSA_id:28205 Nitrobacter winogradskyi 
prokMSA_id:29702 Nitrobacter sp. KB215 
prokMSA_id:47296 Nitrobacter sp. NRB5220 
prokMSA_id:47708 alpha clone BIvi26
prokMSA_id:56503 Nitrobacter sp. KB212 
prokMSA_id:82436 Nitrite-oxidizing MPN2 
2.28.1.6.12.8.396 OTU 10 seqs
prokMSA_id:4914 Afipia genosp. 4 str. G3644
prokMSA_id:4932 Bradyrhizobium lupini str. FN 13 USDA 3505
prokMSA_id:17111 sludge H4 
prokMSA_id:29952 sludge H6 AF234689
prokMSA_id:42466 Bradyrhizobium sp. 1253 
prokMSA_id:44246 sludge H29 
prokMSA_id:46308 sludge S7 AF234717
prokMSA_id:46815 maize root Zmrc164 
prokMSA_id:65618 soil clone S1209 
prokMSA_id:83531 clone CCU18 
2.28.1.6.12.8.397 OTU 12 seqs
prokMSA_id:19767 Bradyrhizobium japonicum strain MSDJ 5317 
prokMSA_id:20645 Bradyrhizobium sp. MSDJ 2009 
prokMSA_id:20975 Bradyrhizobium japonicum strain MSDJ 5582 
prokMSA_id:24680 Bradyrhizobium japonicum strain MSDJ G94 
prokMSA_id:25125 Bradyrhizobium sp. MSDJ 5728 
prokMSA_id:29036 Bradyrhizobium japonicum strain MSDJ 5586 
prokMSA_id:30589 Bradyrhizobium sp. MSDJ 5726 
prokMSA_id:36027 Bradyrhizobium japonicum strain MSDJ 5622 
prokMSA_id:37915 Bradyrhizobium japonicum strain USDA 123 
prokMSA_id:40377 Bradyrhizobium japonicum strain MSDJ 5611 
prokMSA_id:50192 Bradyrhizobium sp. MSDJ 5727 
prokMSA_id:62985 Bradyrhizobium sp. clone T8-12 rrn 
2.28.1.6.12.11 BDR.JAPONICUM8_SUBGROUP 1 seq
2.28.1.6.12.11.398 OTU 1 seq
prokMSA_id:74898 clone:TSS6
2.28.1.6.12.14 BLB.DENITRIFICANS_SUBGROUP 6 seqs
2.28.1.6.12.14.399 OTU 6 seqs
prokMSA_id:4848 clone pCON11. U27817
prokMSA_id:27860 clone p-5142-2Wb3 
prokMSA_id:35423 alpha clone SM2H01 
prokMSA_id:62335 Bradyrhizobium sp. IRBG 228 
prokMSA_id:62336 Bradyrhizobium sp. IRBG 230 
prokMSA_id:62343 Bradyrhizobium sp. BTAi 1 
2.28.1.6.15 MSO.HUAKUII_SUBGROUP 173 seqs
2.28.1.6.15.400 OTU 2 seqs
prokMSA_id:4808 Methylobacterium MBIC4305 str. MBIC4305
prokMSA_id:86804 Mesorhizobium sp. Put-3 
2.28.1.6.15.401 OTU 9 seqs
prokMSA_id:5394 clone pCON19
prokMSA_id:31656 alpha clone BIsi40
prokMSA_id:60695 Phyllobacteriaceae NL21 
prokMSA_id:77579 Mesorhizobium sp. TUT1018 
prokMSA_id:79124 clone csbio160325 
prokMSA_id:88552 DSSD80 
prokMSA_id:88630 DSSD12 
prokMSA_id:90551 DSSD71 
prokMSA_id:90585 DSSD100 
2.28.1.6.15.402 OTU 1 seq
prokMSA_id:87644 Mesorhizobium sp. NK-2 
2.28.1.6.15.403 OTU 161 seqs
prokMSA_id:4601 str. MBIC3368
prokMSA_id:5081 Rhizobium sp. LMG 7854
prokMSA_id:5082 Mesorhizobium loti IAM 13588. D12791
prokMSA_id:5083 Mesorhizobium loti LMG 6124
prokMSA_id:5084 Mesorhizobium genosp. T str. BDV5908
prokMSA_id:5085 Mesorhizobium loti str. 261 ICMP 3153
prokMSA_id:5086 Mesorhizobium plurifarium str. ORS 1032 LMG 11892
prokMSA_id:5089 Mesorhizobium plurifarium LMG 10056
prokMSA_id:5091 Mesorhizobium huakuii IFO 15243
prokMSA_id:5093 Mesorhizobium huakuii IAM 14158 . D12797
prokMSA_id:5094 Mesorhizobium amorphae ACCC 19665
prokMSA_id:5096 Mesorhizobium loti LMG 6123
prokMSA_id:5097 Mesorhizobium genosp. U str. BDV5514
prokMSA_id:5098 Mesorhizobium 'SH 15003' str. SH 15003
prokMSA_id:5099 Mesorhizobium plurifarium LMG 7836
prokMSA_id:5122 Mesorhizobium loti str. 3F6g2 LMG 4284. X67230
prokMSA_id:5124 Mesorhizobium genosp. S str. BDV5911
prokMSA_id:5125 Rhizobium CJ2 str. CJ2 S188 USDA 3440
prokMSA_id:5127 Mesorhizobium ciceri str. UPM-Ca7 ATCC 51585 . U07934
prokMSA_id:5129 str. WSM1284. AF178962
prokMSA_id:5130 str. WSM1283. AF178963
prokMSA_id:5131 str. WSM1497. AF178964
prokMSA_id:5132 Rhizobium CJ5 str. CJ5 24N USDA 3398
prokMSA_id:5142 Mesorhizobium loti ATCC 33669
prokMSA_id:5146 Mesorhizobium tianshanense str. A-1BS USDA 3592
prokMSA_id:5149 Rhizobium sp. str. TAL1148
prokMSA_id:5151 Mesorhizobium loti LMG 6125 . X67229
prokMSA_id:5152 Mesorhizobium HL56 str. HL56
prokMSA_id:5153 Mesorhizobium loti str. R8CS USDA 3467
prokMSA_id:5154 Mesorhizobium loti str. R88b USDA 3462
prokMSA_id:5155 Rhizobium sp. str. CIAM 1414
prokMSA_id:5157 Mesorhizobium mediterraneum str. UPM-Ca36
prokMSA_id:5162 Mesorhizobium tianshanense str. A-1BS DSM 11417
prokMSA_id:5163 Rhizobium SH2672 str. SH2672
prokMSA_id:5169 Brucella melitensis ATCC 23444 . L26169
prokMSA_id:5170 Brucella melitensis ATCC 25840 . L26168
prokMSA_id:5173 clone pCON47. U27818
prokMSA_id:5174 Brucella melitensis ATCC 23459 . L26167
prokMSA_id:5175 Brucella melitensis ATCC 23456 . L26166
prokMSA_id:5180 Solomonas fluorantheni. X54743
prokMSA_id:5182 Ochrobactrum anthropi IFO 13694. D63837
prokMSA_id:5183 Ochrobactrum anthropi LMG 3309
prokMSA_id:5184 Ochrobactrum anthropi LMG 3310
prokMSA_id:5185 Ochrobactrum anthropi LMG 3329
prokMSA_id:5187 Ochrobactrum sp. str. S1
prokMSA_id:5189 Brucella melitensis. L37584
prokMSA_id:5191 Brucella M2357/93 str. M2357/93
prokMSA_id:5192 Brucella abortus str. 544
prokMSA_id:5195 Ochrobactrum intermedium str. CNS 2-75 LMG 3301
prokMSA_id:5196 Ochrobactrum intermedium str. 609360 I
prokMSA_id:5197 Ochrobactrum anthropi LMG 3306
prokMSA_id:5203 Ochrobactrum 'Relman 1999' str. Relman 1999
prokMSA_id:18432 Ochrobactrum sp. DASA 35030 AB079727
prokMSA_id:18750 Mesorhizobium loti strain LMG 17826t1
prokMSA_id:18759 Brucella melitensis operon B complete 
prokMSA_id:18788 Mesorhizobium amorphae strain rob6
prokMSA_id:18809 Mesorhizobium sp. Lo9-4 
prokMSA_id:20161 Mesorhizobium sp. Lo7-12 
prokMSA_id:21021 maize root Zmrc200 
prokMSA_id:22176 Mesorhizobium sp. N33 
prokMSA_id:22616 Mesorhizobium sp. Rch-19B isolate Rch-19B
prokMSA_id:22778 Ochrobactrum sp. 3CB4 
prokMSA_id:22857 Mesorhizobium sp. Rch-9865 Rch-9865
prokMSA_id:22979 Mesorhizobium sp. HB5A4 
prokMSA_id:23612 Mesorhizobium sp. Rch-9815 isolate Rch-9815
prokMSA_id:23862 Mesorhizobium sp. Rch-10B isolate Rch-10B
prokMSA_id:24191 Mesorhizobium sp. Rch-984 isolate Rch-984
prokMSA_id:24617 Mesorhizobium sp. Lc3-2 
prokMSA_id:25484 Ochrobactrum sp. BL200-8 AF106618
prokMSA_id:26637 Mesorhizobium loti strain LMG 17826t2
prokMSA_id:27269 Alpha NW001 
prokMSA_id:27684 Ochrobactrum sp. 4FB9 
prokMSA_id:30025 Mesorhizobium sp. N39 
prokMSA_id:30119 Ochrobactrum sp. 2FB10 AF229865
prokMSA_id:35591 Mesorhizobium sp. ORS1080 strain ORS1080 LMG 15287
prokMSA_id:36443 Mesorhizobium sp. Rch-7B isolate Rch-7B
prokMSA_id:37613 Mesorhizobium sp. USDA 3466 
prokMSA_id:37829 Mesorhizobium sp. N1 
prokMSA_id:38207 Ochrobactrum sp. 4FB12 AF229878
prokMSA_id:39018 Ochrobactrum sp. 3CB5 
prokMSA_id:39417 Mesorhizobium sp. N20 
prokMSA_id:39581 Mesorhizobium sp. Rch-2B isolate Rch-2B
prokMSA_id:40931 ECS13 
prokMSA_id:41420 Brucella melitensis chromosome I complete 
prokMSA_id:41882 Mesorhizobium sp. USDA 4003 
prokMSA_id:42551 Mesorhizobium sp. N31 
prokMSA_id:44325 Brucella melitensis chromosome II complete 
prokMSA_id:44758 Mesorhizobium loti complete genome section 8/21
prokMSA_id:45557 Mesorhizobium amorphae strain rob8
prokMSA_id:45685 Ochrobactrum sp. 4FB14 
prokMSA_id:46665 Mesorhizobium loti complete genome
prokMSA_id:48126 Ochrobactrum sp. isolate PR17/sat
prokMSA_id:48243 Mesorhizobium sp. ORS1259 strain ORS1259 LMG 15324
prokMSA_id:48732 Ochrobactrum anthropi isolate GH 1568
prokMSA_id:48799 Mesorhizobium sp. Rch-981 isolate Rch-981
prokMSA_id:49290 Mesorhizobium sp. strain rob23
prokMSA_id:49775 Brucella melitensis operon A complete 
prokMSA_id:49874 Mesorhizobium sp. HN14A16 
prokMSA_id:50854 Mesorhizobium sp. Lo5-9 
prokMSA_id:52507 Brucella melitensis operon C complete 
prokMSA_id:56114 Brucella suis 1330 chromosome I section 162 of 190 of the co
prokMSA_id:57886 Mesorhizobium sp. SH267neu 
prokMSA_id:57887 Mesorhizobium sp. SH2851 
prokMSA_id:58033 Brucella suis 1330 chromosome II complete 
prokMSA_id:58651 Brucella suis 1330 chromosome I complete 
prokMSA_id:58793 Brucella suis 1330 chromosome II section 100 of 108 of the c
prokMSA_id:59146 Brucella suis 1330 chromosome I section 143 of 190 of the co
prokMSA_id:59527 Ochrobactrum tritici complete 
prokMSA_id:62975 Rhizobium sp. clone 84-5 rrn 
prokMSA_id:63530 Mesorhizobium sp. PRF86 complete 
prokMSA_id:64376 Mesorhizobium plurifarium subsp. americum strain Sn2 
prokMSA_id:64377 Mesorhizobium plurifarium subsp. americum strain Ls29 
prokMSA_id:64378 Mesorhizobium plurifarium subsp. americum strain Ls38 
prokMSA_id:66200 Mesorhizobium ciceri strain Rch9816
prokMSA_id:66251 Ochrobactrum tritici isolate TJ3 
prokMSA_id:67340 Ochrobactrum sp. BPC6 
prokMSA_id:69342 Mesorhizobium sp. CCBAU25126 
prokMSA_id:71992 Mesorhizobium plurifarium strain ORS1255 LMG 15320 AJ295080
prokMSA_id:74017 Mesorhizobium plurifarium strain ORS1096 LMG 15298 AJ295079
prokMSA_id:74322 Ochrobactrum sp. CZ237 isolate CZ237
prokMSA_id:76582 Ochrobactrum gallinifaecis 
prokMSA_id:77381 Ochrobactrum sp. YYS-2002 complete 
prokMSA_id:81730 Mesorhizobium tianshanense AY195846
prokMSA_id:81824 Ochrobactrum sp. SP18 AY217768
prokMSA_id:81838 Mesorhizobium mediterraneum strain PECA20 
prokMSA_id:81855 Mesorhizobium ciceri strain C-2/2 
prokMSA_id:82013 Mesorhizobium sp. ORS207 
prokMSA_id:82201 Mesorhizobium mediterraneum strain PECA03 
prokMSA_id:85845 Sinorhizobium fredii strain SMH13 
prokMSA_id:86871 Mesorhizobium sp. Rop-3 
prokMSA_id:86873 Mesorhizobium sp. Leb-2 
prokMSA_id:86895 Mesorhizobium sp. NK-1 
prokMSA_id:86951 Mesorhizobium sp. Amf-2 
prokMSA_id:87097 Mesorhizobium sp. Leb-4 
prokMSA_id:87120 Mesorhizobium sp. vgn-4 
prokMSA_id:87199 Mesorhizobium sp. Amf-1 
prokMSA_id:87207 Mesorhizobium sp. vgn-5 
prokMSA_id:87262 Mesorhizobium sp. Loc-1 
prokMSA_id:87315 Mesorhizobium sp. Leb-3 
prokMSA_id:87396 Mesorhizobium sp. Rop-1 
prokMSA_id:87441 Mesorhizobium sp. Rop-4 
prokMSA_id:87546 Mesorhizobium sp. Amf-3 
prokMSA_id:87612 Mesorhizobium sp. Put-2 
prokMSA_id:87647 Mesorhizobium sp. Amf-4 
prokMSA_id:87700 Mesorhizobium sp. Leb-1 
prokMSA_id:87784 Mesorhizobium sp. Wif-1 
prokMSA_id:87868 Mesorhizobium sp. Aei-2 
prokMSA_id:87891 Mesorhizobium sp. T2-26 
prokMSA_id:87919 Mesorhizobium sp. Amf-5 
prokMSA_id:87968 Mesorhizobium sp. Rop-2 
prokMSA_id:88263 Stappia sp. M4 
prokMSA_id:90087 Mesorhizobium sp. NMB1 
prokMSA_id:91199 Ochrobactrum sp. mp-6 
prokMSA_id:91228 clone T7-1-C04 
prokMSA_id:91304 Ochrobactrum sp. mp-3 
prokMSA_id:91422 Ochrobactrum sp. mp-5 
prokMSA_id:91445 clone W4A-A02 
prokMSA_id:91905 Brucella sp. mp-7 
prokMSA_id:92003 Ochrobactrum sp. mp-4 
prokMSA_id:92662 Brucellaceae 47211606 
prokMSA_id:94870 Ochrobactrum anthropi AB120120
2.28.1.6.16 MSO.LOTI_SUBGROUP 37 seqs
2.28.1.6.16.404 OTU 15 seqs
prokMSA_id:5109 str. CC495
prokMSA_id:6213 Sphingomonas paucimobilis IFO 13935 . D13725
prokMSA_id:6215 Sphingomonas paucimobilis GIFU 2395 . D16144
prokMSA_id:6228 Sphingomonas paucimobilis ATCC 29837 . X72722
prokMSA_id:6229 Sphingomonas paucimobilis ATCC 29837
prokMSA_id:6231 Sphingomonas paucimobilis ATCC 10829. NONE
prokMSA_id:19915 Sphingomonas sp. MK329 
prokMSA_id:26323 Sphingomonas sp. MK341 D84520
prokMSA_id:26552 Methylotrophic loc440 
prokMSA_id:42710 Sphingomonas sp. MK331 D84519
prokMSA_id:46971 Sphingomonas paucimobilis 
prokMSA_id:58865 UNSW4 
prokMSA_id:58866 UNSW2 
prokMSA_id:59540 CAGY7 strain CAGY7 AF538746
prokMSA_id:90114 Sphingomonas sp. C52 strain C52 AJ575818
2.28.1.6.16.405 OTU 13 seqs
prokMSA_id:6190 Sphingomonas sp. str. UN1F1
prokMSA_id:6295 Sphingomonas QSSC1-14 str. QSSC1-14
prokMSA_id:19427 clone HTB9 
prokMSA_id:21583 clone 1958 
prokMSA_id:27934 Alpha MPD-70 
prokMSA_id:39728 Sphingomonas sp. DJ77 
prokMSA_id:50339 Sphingobium yanoikuyae 
prokMSA_id:74832 alpha clone BIfci17
prokMSA_id:75619 clone:TSR16
prokMSA_id:84218 Antarctic R-9478 strain R-9478
prokMSA_id:84464 Alpha K-2058 parital 
prokMSA_id:86746 Sphingomonas sp. T5-15 
prokMSA_id:93667 Sphingomonas sp. A4 
2.28.1.6.16.406 OTU 1 seq
prokMSA_id:95741 clone B94 
2.28.1.6.16.407 OTU 1 seq
prokMSA_id:46411 alpha clone BIhii25
2.28.1.6.16.408 OTU 1 seq
prokMSA_id:38255 sludge H9 
2.28.1.6.16.409 OTU 1 seq
prokMSA_id:5110 clone 49519 
2.28.1.6.16.410 OTU 2 seqs
prokMSA_id:21643 Agrobacterium kpc17 
prokMSA_id:74699 Unknown marine alpha JP66.1 AY007677
2.28.1.6.16.411 OTU 1 seq
prokMSA_id:48821 alpha clone MERTZ_0CM_263 
2.28.1.6.16.412 OTU 1 seq
prokMSA_id:25284 alpha clone BIri24
2.28.1.6.16.413 OTU 1 seq
prokMSA_id:5138 str. ER2
2.28.1.6.19 DG.ZOOGLOEOIDES_SUBGROUP_I 2 seqs
2.28.1.6.19.414 OTU 1 seq
prokMSA_id:51939 glc14 
2.28.1.6.19.415 OTU 1 seq
prokMSA_id:33043 Q3-24C12 
2.28.1.6.20 SRH.FREDII_SUBGROUP 77 seqs
2.28.1.6.20.416 OTU 1 seq
prokMSA_id:5257 Rhodobium PENDANT-9
2.28.1.6.20.417 OTU 76 seqs
prokMSA_id:5209 Sinorhizobium terangae LMG 7834
prokMSA_id:5210 Sinorhizobium saheli LMG 7837 . X68390
prokMSA_id:5217 Sinorhizobium fredii ATCC 35423 . D14516
prokMSA_id:5226 Sinorhizobium meliloti LMG 6133
prokMSA_id:5227 Sinorhizobium MSMC411 str. MSMC411
prokMSA_id:5231 Sinorhizobium sp. HAMBI 1552
prokMSA_id:5232 Rhizobium XJ96060 str. XJ96060
prokMSA_id:5233 Rhizobium XJ96408 str. XJ96408
prokMSA_id:5245 Sinorhizobium meliloti IAM 12611
prokMSA_id:5249 Sinorhizobium teranga LMG 6463
prokMSA_id:5251 Sinorhizobium meliloti str. RM603
prokMSA_id:5255 Sinorhizobium fredii LMG 6217
prokMSA_id:5258 Sinorhizobium sp. HAMBI 1489
prokMSA_id:5303 Rhizobium CCBAU71462 CCBAU 71462
prokMSA_id:16308 soil clone 60-2 
prokMSA_id:16617 Sinorhizobium sp. M3A strain M3A
prokMSA_id:18833 Sinorhizobium sp. ORS1873 strain ORS 1873 R2180
prokMSA_id:20311 Sinorhizobium xinjiangensis strain Rx22 
prokMSA_id:24151 Sinorhizobium sp. 15C-4 
prokMSA_id:24812 Sinorhizobium sp. Rch-9813 isolate Rch-9813
prokMSA_id:25282 Sinorhizobium terangae strain ORS1244 LMG 15317
prokMSA_id:26055 Sinorhizobium morelense complete 
prokMSA_id:26173 Sinorhizobium sp. L38 97B 
prokMSA_id:26211 clone d035 AF422644
prokMSA_id:27872 Sinorhizobium sp. S007 
prokMSA_id:30671 Arsenite-oxidizing NT-4 
prokMSA_id:32066 alpha MERTZ_0CM_99 
prokMSA_id:32607 Sinorhizobium xinjiangensis strain CCBAU830804 
prokMSA_id:36054 Sinorhizobium sp. C4 
prokMSA_id:36231 Sinorhizobium sp. strain BK1
prokMSA_id:36972 Sinorhizobium sp. S002 
prokMSA_id:36995 soil clone 1306-2 
prokMSA_id:37514 Sinorhizobium sp. C5 
prokMSA_id:38881 Sinorhizobium sp. L38 92 
prokMSA_id:39113 Sinorhizobium xinjiangensis complete 
prokMSA_id:39392 Sinorhizobium sp. ORS1231 strain ORS1231 LMG 15307
prokMSA_id:39445 Sinorhizobium sp. Rch-9868 isolate Rch-9868
prokMSA_id:41048 Arsenite-oxidizing NT-3 
prokMSA_id:42233 Sinorhizobium sp. C9 
prokMSA_id:43191 Sinorhizobium sp. L28 86E 
prokMSA_id:43632 Sinorhizobium sp. RAT902 strain RAT902 R8390
prokMSA_id:43724 Sinorhizobium kummerowiae 
prokMSA_id:44374 Sinorhizobium sp. FJ38 32-1-A 
prokMSA_id:44809 Sinorhizobium terangae strain ORS1082 LMG 15289
prokMSA_id:45045 Sinorhizobium sp. L38 84B 
prokMSA_id:46106 Sinorhizobium sp. L 74D 
prokMSA_id:46924 Sinorhizobium meliloti 1021 complete genomes
prokMSA_id:48966 Sinorhizobium meliloti strain ORS1044 LMG 15285
prokMSA_id:49783 Sinorhizobium sp. strain BK10
prokMSA_id:50286 Sinorhizobium sp. 1004b 
prokMSA_id:51380 Sinorhizobium sp. S005 
prokMSA_id:52806 Sinorhizobium xinjiangensis strain CCBAU110 
prokMSA_id:61016 Sinorhizobium meliloti strain WSM1701 
prokMSA_id:63195 Sinorhizobium morelense strain LMG 20571
prokMSA_id:63196 Sinorhizobium adhaerens strain LMG 20582
prokMSA_id:63199 Sinorhizobium adhaerens strain 5D19
prokMSA_id:63200 Sinorhizobium adhaerens strain HAMBI 1631
prokMSA_id:63996 Sinorhizobium meliloti 1021 complete chromosome; segment 11/
prokMSA_id:64001 Sinorhizobium meliloti 1021 complete chromosome; segment 10/
prokMSA_id:64021 Sinorhizobium meliloti 1021 complete chromosome; segment 1/1
prokMSA_id:64288 Ensifer adhaerens 
prokMSA_id:69312 Sinorhizobium morelense 
prokMSA_id:71225 Sinorhizobium terangae strain ORS1254 LMG 15319 AJ295075
prokMSA_id:72907 mle1-44 AF280865
prokMSA_id:74392 Sinorhizobium sp. ORS1236 strain ORS1236 LMG 18076 AJ295077
prokMSA_id:74439 Sinorhizobium sp. ORS1085 strain ORS1085 LMG 15292 AJ295078
prokMSA_id:77951 Sinorhizobium kummerowiae 
prokMSA_id:82107 Sinorhizobium meliloti strain GVPV12 AY196962
prokMSA_id:82287 Sinorhizobium meliloti strain LMTR32 
prokMSA_id:83138 Sinorhizobium fredii strain USDA205 
prokMSA_id:83912 Sinorhizobium fredii strain HH303 
prokMSA_id:83976 Sinorhizobium fredii strain HH103 
prokMSA_id:85246 Sinorhizobium fredii strain HH003 
prokMSA_id:85533 Sinorhizobium fredii strain USDA257 
prokMSA_id:85924 Rhizobium sp. NGR234 
prokMSA_id:87019 Sinorhizobium sp. Mes-2 
2.28.1.6.24 RHB.LEGUMINOSARUM_SUBGROUP 4 seqs
2.28.1.6.24.1 RHB.LEGU11_SUBGROUP 1 seq
2.28.1.6.24.1.418 OTU 1 seq
prokMSA_id:90420 soil clone HN1-6 
2.28.1.6.24.3 RHB.SP3618_SUBGROUP 3 seqs
2.28.1.6.24.3.419 OTU 3 seqs
prokMSA_id:5220 Sinorhizobium meliloti IAM 12611. D12783
prokMSA_id:5222 Sinorhizobium fredii IAM 13625. D12792
prokMSA_id:87139 Rhizobium sp. Aei-4 
2.28.1.6.26 AGROBACTERIUM_SUBGROUP 18 seqs
2.28.1.6.26.1 DV.RIBOFLAVINA_SUBGROUP 3 seqs
2.28.1.6.26.1.420 OTU 3 seqs
prokMSA_id:19085 alpha clone BIfdii32
prokMSA_id:51695 clone C26-26 
prokMSA_id:72782 Azospirillum sp. B518 AB049112
2.28.1.6.26.3 AG.TUMEFACIENS_SUBGROUP 13 seqs
2.28.1.6.26.3.421 OTU 10 seqs
prokMSA_id:26338 Agrobacterium tumefaciens strain IrT-JG-6
prokMSA_id:37624 Agrobacterium sp. IrT-JG14-14 
prokMSA_id:49700 Agrobacterium sp. IrT-JG14-33 
prokMSA_id:56163 alpha clone ccspost2147 AY133103
prokMSA_id:59901 alpha clone ccspost215 
prokMSA_id:62396 alpha clone FTLM218 
prokMSA_id:66249 Agrobacterium tumefaciens isolate C4 
prokMSA_id:70205 Agrobacterium albertimagni complete 
prokMSA_id:94089 Agrobacterium tumefaciens strain UP-3 
prokMSA_id:95229 alpha clone NAB19 
2.28.1.6.26.3.422 OTU 2 seqs
prokMSA_id:66958 Agrobacterium sp. PB 
prokMSA_id:89669 Alpha pACH83 
2.28.1.6.26.3.423 OTU 1 seq
prokMSA_id:44165 Agrobacterium sp. IrT-JG14-24 
2.28.1.6.26.4 AG.VITIS_SUBGROUP 2 seqs
2.28.1.6.26.4.424 OTU 2 seqs
prokMSA_id:5451 str. NT-26
prokMSA_id:79109 clone csbio160171 
2.28.1.6.27 BARTONELLA_SUBGROUP 23 seqs
2.28.1.6.27.425 OTU 11 seqs
prokMSA_id:5463 Bartonella grahamii str. V2 NCTC 12860
prokMSA_id:5472 Bartonella bacilliformis str. LA6.3. Z70003
prokMSA_id:5476 Bartonella clarridgeiae str. Houston-2 cat ATCC 51734 . X892
prokMSA_id:5477 Bartonella clarridgeiae CIP 104772
prokMSA_id:5478 Bartonella sp. str. 94-F40
prokMSA_id:5505 Bartonella doshiae str. R18 NCTC 12862
prokMSA_id:16865 Bartonella clarridgeiae strain Ber-K185
prokMSA_id:17437 Bartonella vinsonii subsp. arupensis 
prokMSA_id:37097 Rhizobium sp. strain RH 44 508bp Y10172
prokMSA_id:43831 Bartonella sp. Deer 159/660/1 
prokMSA_id:74316 Bartonella sp
2.28.1.6.27.426 OTU 9 seqs
prokMSA_id:18609 sludge S36 AF234756
prokMSA_id:19640 Bartonella sp. 1021 
prokMSA_id:20378 sludge A20 AF234728
prokMSA_id:21846 Azospirillum sp. B506 
prokMSA_id:28404 clone CRD99-17 
prokMSA_id:35005 clone CR99-7-15 
prokMSA_id:35722 clone CR99-7-04 
prokMSA_id:66504 clone cvf70169 
prokMSA_id:97400 clone EACUL1F4 
2.28.1.6.27.427 OTU 3 seqs
prokMSA_id:5135 Ahrensia kielensis IAM 12618 . D88524
prokMSA_id:5158 Phyllobacterium rubiacearum IAM 13587. D12790
prokMSA_id:21875 Bartonella sp 1007a 
2.28.1.7 CAULOBACTER_GROUP 128 seqs
2.28.1.7.3 CAU.VIBRIOIDES_SUBGROUP_II 32 seqs
2.28.1.7.3.428 OTU 1 seq
prokMSA_id:55270 clone D
2.28.1.7.3.429 OTU 2 seqs
prokMSA_id:5557 Caulobacter fusiformis ATCC 15257
prokMSA_id:93768 alpha clone JG36-GS-63
2.28.1.7.3.430 OTU 8 seqs
prokMSA_id:4815 Afipia genosp. 9 str. G8989
prokMSA_id:5415 Agrobacterium tumefaciens str. IAM 13558. D13943
prokMSA_id:5560 Caulobacter henricii ATCC 15253 . AJ007805
prokMSA_id:20698 Afipia sp. A8-3 3'- 
prokMSA_id:43530 GKS2-215 
prokMSA_id:52614 
prokMSA_id:65636 soil clone S1140 
prokMSA_id:89320 Caulobacter sp. clone I-14 
2.28.1.7.3.431 OTU 16 seqs
prokMSA_id:5113 Aquamicrobium defluvii DSM 11603
prokMSA_id:5530 Caulobacter sp. str. FWC18
prokMSA_id:5535 Caulobacter sp. str. FWC33
prokMSA_id:5536 Caulobacter sp. str. FWC35
prokMSA_id:5537 Caulobacter sp. str. FWC41
prokMSA_id:5564 Asticcacaulis biprosthecium str. MBIC3411 ATCC 27554
prokMSA_id:22289 Mesorhizobium sp. 4FB11 
prokMSA_id:25580 Asticcacaulis biprosthecium strain DSM 4723
prokMSA_id:36796 alpha clone BImi11
prokMSA_id:55851 clone HP1B78 
prokMSA_id:59329 clone HP1U21 
prokMSA_id:59347 clone HP1B26 
prokMSA_id:72415 clone HP1U61 AF502240
prokMSA_id:91213 G8 
prokMSA_id:93202 Asticcacaulis sp. SA7 
prokMSA_id:94862 clone F-OTU11 
2.28.1.7.3.432 OTU 1 seq
prokMSA_id:87263 Ancylobacter sp. T5-17 
2.28.1.7.3.433 OTU 4 seqs
prokMSA_id:5519 Caulobacter vibrioides
prokMSA_id:5555 Caulobacter vibrioides str. CB13
prokMSA_id:55875 Caulobacter crescentus ; tRNA-Ile and tRNA-Ala genes complet
prokMSA_id:999996 SYN Cau.cres
2.28.1.7.5 CAU.SUBVIBRIOIDES_SUBGROUP 96 seqs
2.28.1.7.5.434 OTU 1 seq
prokMSA_id:88669 DSSF55 
2.28.1.7.5.435 OTU 30 seqs
prokMSA_id:26810 Achromobacter sp. LMG5410 AF227158
prokMSA_id:27535 alpha clone SM1D08 
prokMSA_id:31969 alpha isolate C6/8
prokMSA_id:39707 alpha isolate C6/17
prokMSA_id:47270 Alpha C6-19 isolate C6-19
prokMSA_id:70624 A.lipoferum F X79736
prokMSA_id:70672 Achromobacter sp. LMG5431 AF227159
prokMSA_id:72136 Achromobacter sp. LMG5430 AF227160
prokMSA_id:74042 Achromobacter sp. LMG5411 AF227157
prokMSA_id:88123 DSSD52 
prokMSA_id:88157 HOClCi30 
prokMSA_id:88349 HOClCi45 
prokMSA_id:88419 DSSF56 AY328678
prokMSA_id:88517 DSSF23 
prokMSA_id:88571 HOClCi49 
prokMSA_id:88915 DSSF70 
prokMSA_id:89071 HOClCi13 AY328562
prokMSA_id:89101 DSSF8 
prokMSA_id:89167 DSSF31 
prokMSA_id:89315 DSSF4 
prokMSA_id:89551 HOClCi19 
prokMSA_id:89570 HOClCi40 
prokMSA_id:89583 DSSF60 
prokMSA_id:89652 HOClCi17 
prokMSA_id:89819 DSSF14 
prokMSA_id:89955 HOClCi2 AY328551
prokMSA_id:90169 DSSF57 
prokMSA_id:90327 HOClCi66 
prokMSA_id:90360 HOClCi20 
prokMSA_id:91427 K2-3 
2.28.1.7.5.436 OTU 2 seqs
prokMSA_id:5596 Brevundimonas diminuta LMG 2089
prokMSA_id:5597 Brevundimonas diminuta LMG 2337
2.28.1.7.5.437 OTU 2 seqs
prokMSA_id:4710 Blastochloris sulfoviridis DSM 729
prokMSA_id:43186 Brevundimonas variabilis strain ATCC 15255 
2.28.1.7.5.438 OTU 35 seqs
prokMSA_id:4747 str. AML-A3. AF177298
prokMSA_id:4752 Methylocystis M str. M. U81595
prokMSA_id:4753 Methylocystis WI 14 str. WI 14
prokMSA_id:4755 Methylocystis EB-1 str. EB-1
prokMSA_id:5568 Caulobacter intermedius str. CB63 ACM 2608
prokMSA_id:5575 Brevundimonas FWC14 str. FWC14
prokMSA_id:5578 Caulobacter intermedius str. CB63 ATCC 15262
prokMSA_id:5579 Brevundimonas bacteroides str. CB7 LMG 15096
prokMSA_id:5584 Brevundimonas V4.BO.10 str. V4.BO.10
prokMSA_id:5586 Caulobacter sp. str. CB28 DSM 10670
prokMSA_id:32399 Methylobacterium sp. G296-15 
prokMSA_id:36908 Rhizobiaceae str. M100 
prokMSA_id:49192 alpha clone SM2B07 
prokMSA_id:53033 Brevundimonas intermedia strain ATCC 15262
prokMSA_id:55601 Methylocystis sp. 42/22 strain 42/22
prokMSA_id:56124 Methylocystis sp. M42/1 strain M42/1
prokMSA_id:56187 Methylocystis sp. H9a strain H9a
prokMSA_id:56327 clone UP7 
prokMSA_id:58408 Methylocystis sp. 18-2 
prokMSA_id:61187 clone UP4 
prokMSA_id:61188 clone UP6 
prokMSA_id:61191 clone UP5 
prokMSA_id:64201 Methylocystis sp. M31 strain M31
prokMSA_id:64206 Methylocystis sp. KS7 strain KS7
prokMSA_id:64207 Methylocystis sp. KS3 strain KS3
prokMSA_id:64225 Methylocystis sp. IMET 10489 strain IMET 10489
prokMSA_id:64228 Methylocystis sp. IMET 10484 strain IMET 10484
prokMSA_id:68458 Symbiont cf. Methylobacterium of Acromyrmex octospinosus 
prokMSA_id:73480 Brevundimonas sp. LMG 19834 strain LMG 19834 AJ300773
prokMSA_id:81626 Methylobacterium sp. BJ001 and -23S intergenic spacer region
prokMSA_id:82248 Methylobacterium sp. BJ001 and IGS clone 2
prokMSA_id:84672 Methylobacterium sp. BJ001 and -23S intergenic spacer comple
prokMSA_id:85734 clone ABLCf14 AF499910
prokMSA_id:88130 Brevundimonas intermedia strain MR320R
prokMSA_id:89707 DSSD81 
2.28.1.7.5.439 OTU 2 seqs
prokMSA_id:4977 str. BTH
prokMSA_id:5595 Brevundimonas diminuta IAM 12691
2.28.1.7.5.440 OTU 1 seq
prokMSA_id:74841 alpha rcr_47 
2.28.1.7.5.441 OTU 1 seq
prokMSA_id:89596 DSSF59 
2.28.1.7.5.442 OTU 1 seq
prokMSA_id:44086 alpha rcr_1 
2.28.1.7.5.443 OTU 16 seqs
prokMSA_id:5126 str. MBIC3923
prokMSA_id:5554 Caulobacter sp. str. FWC38
prokMSA_id:5615 Mycoplana bullata IAM 13153 . D12785
prokMSA_id:5616 Caulobacter MBIC3983 str. MBIC3983
prokMSA_id:5617 Brevundimonas subvibrioides str. CB81 LMG 14903
prokMSA_id:5619 Brevundimonas FWC05 str. FWC05. AJ227794
prokMSA_id:5620 Brevundimonas FWC43 str. FWC43
prokMSA_id:5622 Caulobacter sp. str. CB66 DSM 10556
prokMSA_id:5623 Caulobacter sp. str. CB26 DSM 6811
prokMSA_id:5624 Caulobacter sp. str. CB35 DSM 10560
prokMSA_id:22521 clone CR98-5-47 
prokMSA_id:42557 alpha rcr_45 
prokMSA_id:71758 alpha strain OS-123B AJ311963
prokMSA_id:89127 DSSD53 
prokMSA_id:90002 Drinking water MA11 
prokMSA_id:90689 Drinking water MA9 
2.28.1.7.5.444 OTU 1 seq
prokMSA_id:56673 alpha FL12F01 
2.28.1.7.5.445 OTU 1 seq
prokMSA_id:5603 Brevundimonas vesicularis ACM 2862
2.28.1.7.5.446 OTU 1 seq
prokMSA_id:5618 Brevundimonas FWC04 str. FWC04
2.28.1.7.5.447 OTU 1 seq
prokMSA_id:50111 alpha FL07H12 
2.28.1.7.5.448 OTU 1 seq
prokMSA_id:72461 alpha FL12F11 
2.28.1.8 RHODOBACTER-RHODOVULUM-HYPHOMONAS-RICKETTSIA 210 seqs
2.28.1.8.1 RHODOBACTER_GROUP 75 seqs
2.28.1.8.1.1 ROS.LITORALIS_SUBGROUP 31 seqs
2.28.1.8.1.1.1 ROS.DENITRIFICANS_SUBGROUP 27 seqs
2.28.1.8.1.1.1.449 OTU 5 seqs
prokMSA_id:17964 Roseobacter 667-19 isolate 667-19
prokMSA_id:35200 Marine SCRIPPS_101 
prokMSA_id:38427 Vestimentiferan symbiont TW-3 AB042416
prokMSA_id:78686 Sulfitobacter deliciae strain KMM 3554 
prokMSA_id:78878 Sulfitobacter dubium strain KMM 3584 
2.28.1.8.1.1.1.450 OTU 1 seq
prokMSA_id:48257 marine alpha AS-19 
2.28.1.8.1.1.1.451 OTU 12 seqs
prokMSA_id:5841 Caulobacter maris ATCC 15268 . AJ007807
prokMSA_id:5845 Caulobacter halobacteroides ATCC 15269
prokMSA_id:5848 NCIMB 2022
prokMSA_id:5851 Maricaulis MCS11 str. MCS11
prokMSA_id:5855 Maricaulis MCS28 str. MCS28
prokMSA_id:27292 Maricaulis sp. MCS31 strain MCS31
prokMSA_id:31210 alpha kpc123rc 
prokMSA_id:32951 Maricaulis sp. MCS30 strain MCS30
prokMSA_id:33484 Maricaulis maris strain ATCC 15269
prokMSA_id:49200 Maricaulis maris strain ATCC 15268 
prokMSA_id:49396 Maricaulis sp. MCS10 strain MCS10
prokMSA_id:49670 clone KS14 
2.28.1.8.1.1.1.452 OTU 9 seqs
prokMSA_id:2584 Microscilla sericea str. SIO-7 ATCC 23182. M58794
prokMSA_id:2620 Flexibacter tractuosus str. Lewis BA-3 ATCC 23168 . M58789
prokMSA_id:19323 CFB groupbacterium NAC60-3 AF245645
prokMSA_id:58607 Microscilla sericea strain:IFO 15983
prokMSA_id:58616 Flexibacter tractuosus strain:IFO 15989
prokMSA_id:58617 Flexibacter tractuosus strain:IFO 15981
prokMSA_id:58619 Flexibacter tractuosus strain:IFO 15979
prokMSA_id:90078 Bacteroidetes MWH-CFBk5 isolate MWH-CFBk5 AJ565431
prokMSA_id:94417 clone A120 complete 
2.28.1.8.1.1.2 RG.ALGICOLA_SUBGROUP 2 seqs
2.28.1.8.1.1.2.453 OTU 2 seqs
prokMSA_id:42048 Hydrothermal vent strain AG33 
prokMSA_id:45968 Marine SE45 
2.28.1.8.1.1.5 OCT.ANTARCTICUS_SUBGROUP 2 seqs
2.28.1.8.1.1.5.454 OTU 2 seqs
prokMSA_id:26286 marine alpha AS-35 
prokMSA_id:61950 Paracoccus-like sp. V4.BP.10 marine isolate
2.28.1.8.1.2 PARACOCCUS_SUBGROUP 44 seqs
2.28.1.8.1.2.1 PAR.DENITRIFICANS_SUBGROUP 22 seqs
2.28.1.8.1.2.1.455 OTU 1 seq
prokMSA_id:63012 Paracoccus sp. WB1 
2.28.1.8.1.2.1.456 OTU 1 seq
prokMSA_id:86027 Paracoccus aminovorans isolate dPAO9 
2.28.1.8.1.2.1.457 OTU 1 seq
prokMSA_id:92016 clone K2-S-3 
2.28.1.8.1.2.1.458 OTU 10 seqs
prokMSA_id:5740 Paracoccus MBIC1145 str. MBIC1145
prokMSA_id:5761 Paracoccus aminovorans str. DM-82 JCM 7685
prokMSA_id:5766 Paracoccus alcaliphilus str. TK 1015 JCM 7364
prokMSA_id:24018 Paracoccus sp. T231 
prokMSA_id:38102 Paracoccus alcaliphilus AY014177
prokMSA_id:78216 Paracoccus sp. TUT1021 
prokMSA_id:80137 Arctic sea ice associated ARK10006 
prokMSA_id:96518 clone F15 
prokMSA_id:96526 clone F11 
prokMSA_id:97186 clone F46 
2.28.1.8.1.2.1.459 OTU 9 seqs
prokMSA_id:5745 Paracoccus KS2
prokMSA_id:5760 Paracoccus thiocyanatus str. THI 011; 1-8A IAM 12816 . D3224
prokMSA_id:22206 Paracoccus yeeii strain G1212 AY014173
prokMSA_id:23110 Paracoccus yeeii strain G4878 
prokMSA_id:28217 Paracoccus yeeii strain G6446 
prokMSA_id:33902 Paracoccus yeeii strain H13 
prokMSA_id:44012 Paracoccus yeeii strain G6155 
prokMSA_id:52386 Paracoccus yeeii strain G1968 AY014171
prokMSA_id:91772 K2-53A 
2.28.1.8.1.2.2 PAR.AMINOPHILUS_SUBGROUP 1 seq
2.28.1.8.1.2.2.460 OTU 1 seq
prokMSA_id:5769 Paracoccus MBIC4017 str. MBIC4017
2.28.1.8.1.2.4 RB.VELDKAMPII_SUBGROUP 1 seq
2.28.1.8.1.2.4.461 OTU 1 seq
prokMSA_id:56159 Rhodobacter sp. AP-10 
2.28.1.8.1.2.5 STR.SW2_SUBGROUP 4 seqs
2.28.1.8.1.2.5.462 OTU 4 seqs
prokMSA_id:5785 str. from 400 mbsl of lake Baikal RUSSIA
prokMSA_id:26781 clone CR98-35-68 
prokMSA_id:29360 WD236 clone WD236 AJ292596
prokMSA_id:29427 clone CRD99-50 
2.28.1.8.1.2.6 RB.SPHAEROIDES_SUBGROUP 2 seqs
2.28.1.8.1.2.6.463 OTU 1 seq
prokMSA_id:33547 Roseobacter kpc34 
2.28.1.8.1.2.6.464 OTU 1 seq
prokMSA_id:21491 alpha clone SM1C11 
2.28.1.8.1.2.7 AMR.MACAUENSIS_SUBGROUP 3 seqs
2.28.1.8.1.2.7.465 OTU 2 seqs
prokMSA_id:5804 Amaricoccus kaplicensis str. Ben101 ACM 5099 . U88041
prokMSA_id:5806 Tetracoccus cechii str. Czech
2.28.1.8.1.2.7.466 OTU 1 seq
prokMSA_id:66503 clone cvf74058 
2.28.1.8.1.2.8 RB.CAPSULATUS_SUBGROUP 11 seqs
2.28.1.8.1.2.8.467 OTU 5 seqs
prokMSA_id:17078 sludge A27 AF234729
prokMSA_id:22427 sludge A6 
prokMSA_id:23200 sludge A41 
prokMSA_id:34114 sludge H42 
prokMSA_id:40921 sludge S2 AF234725
2.28.1.8.1.2.8.468 OTU 1 seq
prokMSA_id:77954 Rhodobacter sp. B-7005 
2.28.1.8.1.2.8.469 OTU 5 seqs
prokMSA_id:5815 Rhodobacter capsulatus str. C5. D16427
prokMSA_id:5816 Rhodobacter TCRI 3 str. TCRI 3
prokMSA_id:5817 Rhodobacter TCRI 5 str. TCRI 5
prokMSA_id:5818 Rhodobacter TCRI str. TCRI 2
prokMSA_id:71562 alpha clone DC5-50-1 
2.28.1.8.2 RHODOVULUM_GROUP 12 seqs
2.28.1.8.2.1 RHV.ADRIATICUM_SUBGROUP 2 seqs
2.28.1.8.2.1.470 OTU 1 seq
prokMSA_id:5825 Rhodovulum adriaticum DSM 2781
2.28.1.8.2.1.471 OTU 1 seq
prokMSA_id:77962 Rhodovulum sp. AT2111 
2.28.1.8.2.2 RHV.SULFIDOPHILUM_SUBGROUP 10 seqs
2.28.1.8.2.2.472 OTU 9 seqs
prokMSA_id:5831 Rhodovulum sulfidophilum str. TW13. D16422
prokMSA_id:5832 Rhodovulum sulfidophilum str. W4 DSM 1374 . D16423
prokMSA_id:5834 Rhodovulum sulfidophilum str. TW13
prokMSA_id:5836 Rhodovulum sulfidophilum str. W12 DSM 2351
prokMSA_id:5838 Rhodovulum sp. str. MB263
prokMSA_id:5840 Rhodovulum sp. str. MB260. D16420
prokMSA_id:60362 Rhodobacter group PH33 
prokMSA_id:73644 R. sulfidophilum 
prokMSA_id:78323 Rhodovulum sp. AR2102 
2.28.1.8.2.2.473 OTU 1 seq
prokMSA_id:5835 Rhodovulum sulfidophilum str. W-1S FERM P-15320
2.28.1.8.3 HYPHOMONAS_GROUP 2 seqs
2.28.1.8.3.1 CAU.HALOBACTEROIDES_SUBGROUP 2 seqs
2.28.1.8.3.1.474 OTU 1 seq
prokMSA_id:88159 DSSD59 
2.28.1.8.3.1.475 OTU 1 seq
prokMSA_id:24031 Maricaulis sp. clone MERTZ_0CM_265 
2.28.1.8.5 RICKETTSIA_AND_OTHERS 121 seqs
2.28.1.8.5.4 HOLOSPORA_SUBGROUP 4 seqs
2.28.1.8.5.4.476 OTU 2 seqs
prokMSA_id:5918 Caedibacter caryophila str. 221 . X71837
prokMSA_id:21579 Caedibacter caryophila isolate BGD19
2.28.1.8.5.4.477 OTU 2 seqs
prokMSA_id:5917 Holospora obtusa
prokMSA_id:22925 H.obtusa X58198
2.28.1.8.5.5 RICKETTSIA_SUBGROUP 15 seqs
2.28.1.8.5.5.478 OTU 1 seq
prokMSA_id:35350 alpha clone SM1B06 
2.28.1.8.5.5.479 OTU 4 seqs
prokMSA_id:39764 Rickettsia endosymbiont of Hemicrepsis marginata 
prokMSA_id:52394 Rickettsia endosymbiont of Torix tagoi 
prokMSA_id:65330 Rickettsia sp. DT1 
prokMSA_id:93807 Rickettsia endosymbiont of Nuclearia pattersoni 
2.28.1.8.5.5.480 OTU 3 seqs
prokMSA_id:5947 Rickettsia australis str. RHS
prokMSA_id:5962 Rickettsia sp. str. Puerto Rico
prokMSA_id:5970 Rickettsia rhipicephali str. 3-7-6
2.28.1.8.5.5.481 OTU 7 seqs
prokMSA_id:5943 Rickettsia akari str. MK Kaplan
prokMSA_id:5960 Rickettsia typhi str. Wilmington. M20499
prokMSA_id:5964 Rickettsia sp. str. ELB agent
prokMSA_id:5969 Rickettsia akari str. Hartford. U12458
prokMSA_id:5974 Rickettsia rickettsii str. R ATCC VR-891 . M21293
prokMSA_id:28211 Rickettsia sp. BJ-90 
prokMSA_id:65324 Rickettsia sp. IO1 
2.28.1.8.5.8 EHR.RISTICII_SUBGROUP 15 seqs
2.28.1.8.5.8.482 OTU 1 seq
prokMSA_id:17901 Ehrlichia sp. 'trout isolate' 
2.28.1.8.5.8.483 OTU 14 seqs
prokMSA_id:5996 Ehrlichia risticii str. Illinois ATCC VR-986 alpha purple
prokMSA_id:5998 Ehrlichia risticii
prokMSA_id:6001 Ehrlichia risticii str. Kentucky isolate
prokMSA_id:6004 Ehrlichia risticii
prokMSA_id:6005 Ehrlichia risticii str. SHSN-1
prokMSA_id:6006 Ehrlichia risticii str. SHSN-2
prokMSA_id:6007 Ehrlichia sp
prokMSA_id:6008 Ehrlichia risticii str. Ohio isolate 081
prokMSA_id:6011 Ehrlichia sennetsu str. 11908
prokMSA_id:6012 Ehrlichia sennetsu str. Miyayama
prokMSA_id:24883 Ehrlichia risticii isolate S22 
prokMSA_id:33480 Ehrlichia risticii from Caddisfly larvae 
prokMSA_id:67336 Ehrlichia risticii from horse 1 
prokMSA_id:67337 Ehrlichia risticii from horse 2 
2.28.1.8.5.9 EHRLICHIA_SUBGROUP 52 seqs
2.28.1.8.5.9.1 EHR.CANIS_SUBGROUP 27 seqs
2.28.1.8.5.9.1.484 OTU 10 seqs
prokMSA_id:6018 Ehrlichia chaffeensis complete 
prokMSA_id:6026 Ehrlichia ewingii str. Stillwater
prokMSA_id:6027 Ehrlichia ewingii str. 95E9-TS. U96436
prokMSA_id:6028 Ehrlichia muris str. AS145 ATCC VR-1411
prokMSA_id:6030 Ehrlichia muris str. I268
prokMSA_id:6031 Ehrlichia muris str. NA1
prokMSA_id:30672 Ehrlichia sp. HI-2000 
prokMSA_id:36711 Ehrlichia sp. HF565 
prokMSA_id:40434 Ehrlichia sp. Anan 
prokMSA_id:72320 Ehrlichia ewingii strain 95E7-MK U96435
2.28.1.8.5.9.1.485 OTU 17 seqs
prokMSA_id:6014 Ehrlichia chaffeensis str. 91HE17
prokMSA_id:6016 Ehrlichia chaffeensis str. Jax
prokMSA_id:6017 Ehrlichia chaffeensis str. St. Vincent
prokMSA_id:6019 Ehrlichia canis str. Oklahoma
prokMSA_id:6022 Ehrlichia canis str. Gzh982
prokMSA_id:6023 Ehrlichia sp. str. Germishuys
prokMSA_id:6032 Ehrlichia chaffeensis str. Arkansas
prokMSA_id:6033 Ehrlichia canis str. Florida
prokMSA_id:19195 Ehrlichia chaffeensis strain Arkansas ; and succinate dehydr
prokMSA_id:24968 Ehrlichia sp. ERm58 
prokMSA_id:27178 Ehrlichia canis strain 95E10-26039 U96437
prokMSA_id:32463 Ehrlichia canis isolate VHE 
prokMSA_id:38150 Ehrlichia ovina 
prokMSA_id:38268 Ehrlichia canis isolate VDE 
prokMSA_id:41424 Ehrlichia sp. Tibet 
prokMSA_id:52566 Ehrlichia canis isolate VTE 
prokMSA_id:94201 Ehrlichia canis strain Kagoshima 1 
2.28.1.8.5.9.2 EHR.PHAGOCYTOPHILA_SUBGROUP 25 seqs
2.28.1.8.5.9.2.486 OTU 1 seq
prokMSA_id:25427 Anaplasma centrale 
2.28.1.8.5.9.2.487 OTU 20 seqs
prokMSA_id:6049 Ehrlichia sp
prokMSA_id:6051 Ehrlichia sp
prokMSA_id:6053 Ehrlichia sp
prokMSA_id:6054 Ehrlichia sp. str. rosa
prokMSA_id:6058 Ehrlichia sp. str. Swiss horse 1
prokMSA_id:6061 Ehrlichia phagocytophila str. OS Old Sourhope
prokMSA_id:6062 Ehrlichia phagocytophila str. FG feral goat
prokMSA_id:6066 Ehrlichia 'HGE agent' str. CAHU-HGE1
prokMSA_id:6067 Ehrlichia 'HGE agent' str. CAHU-HGE2
prokMSA_id:6069 Ehrlichia equi str. CASOLJ
prokMSA_id:6070 Ehrlichia equi str. CAMEBS
prokMSA_id:6071 Ehrlichia equi str. CASITL
prokMSA_id:6072 Ehrlichia equi str. CAMAWI
prokMSA_id:6073 Ehrlichia sp
prokMSA_id:6074 Ehrlichia equi
prokMSA_id:25787 Ehrlichia sp. RND-1 AF469005
prokMSA_id:39876 Anaplasma phagocytophilum complete ; and succinate dehydroge
prokMSA_id:49397 Ehrlichia sp. 'LGE agent' 
prokMSA_id:81085 Anaplasma sp. AnHl446 
prokMSA_id:81457 Anaplasma sp. AnDa465 
2.28.1.8.5.9.2.488 OTU 4 seqs
prokMSA_id:6040 Ehrlichia bovis
prokMSA_id:6048 Ehrlichia sp. str. Omatjenne
prokMSA_id:33737 Ehrlichia sp. Bom Pastor 
prokMSA_id:74038 Ehrlichia bovis 
2.28.1.8.5.10 WOLBACHIA_SUBGROUP 35 seqs
2.28.1.8.5.10.489 OTU 1 seq
prokMSA_id:6121 endosymbiont of Rhinocyllus conicus
2.28.1.8.5.10.490 OTU 11 seqs
prokMSA_id:6130 Wolbachia sp
prokMSA_id:18468 Wolbachia sp. Ablan16SWol 
prokMSA_id:28156 Wolbachia sp. Avit16SWol 
prokMSA_id:28825 Wolbachia pipientis 
prokMSA_id:30977 Wolbachia sp. WCR16SWol 
prokMSA_id:34685 Wolbachia sp
prokMSA_id:41221 Wolbachia sp. Dlem16SWol 
prokMSA_id:52243 Wolbachia sp. Dcris16SWol 
prokMSA_id:52332 Wolbachia endosymbiont of Nephila clavata 
prokMSA_id:77810 Wolbachia endosymbiont of Paratullbergia callipygos 
prokMSA_id:89362 Wolbachia endosymbiont of Mesaphorura italica strain wIta AJ
2.28.1.8.5.10.491 OTU 2 seqs
prokMSA_id:6107 unnamed organism
prokMSA_id:6134 Wolbachia sp
2.28.1.8.5.10.492 OTU 19 seqs
prokMSA_id:6082 symbiont of Muscifidurax uniraptor. L02882
prokMSA_id:6090 symbiont of incompatibility symbiont of Nasonia vitripennis.
prokMSA_id:6091 Wolbachia Efor. AF045189
prokMSA_id:6092 Wolbachia Dros. AF045190
prokMSA_id:6094 Wolbachia sp
prokMSA_id:6095 Wolbachia sp
prokMSA_id:6096 Wolbachia sp
prokMSA_id:6098 Wolbachia sp
prokMSA_id:6099 Wolbachia sp
prokMSA_id:6100 Wolbachia sp
prokMSA_id:6104 symbiont of Trichogramma deion
prokMSA_id:6112 endosymbiont of Bangasternus orientalis
prokMSA_id:6118 symbiont of incompatibility symbiont of Nasonia longicornis.
prokMSA_id:6124 Wolbachia sp. AJ010275
prokMSA_id:6125 unnamed organism
prokMSA_id:6128 Wolbachia pipientis
prokMSA_id:6129 Wolbachia sp
prokMSA_id:6132 unnamed organism
prokMSA_id:43030 Wolbachia sp. Okinawa-RS32 
2.28.1.8.5.10.493 OTU 1 seq
prokMSA_id:6079 endosymbiont of Sitophilus oryzae
2.28.1.8.5.10.494 OTU 1 seq
prokMSA_id:6105 symbiont of Trichogramma deion
2.28.1.9 RT.SALEXIGENS_GROUP 3 seqs
2.28.1.9.495 OTU 1 seq
prokMSA_id:35927 alpha clone CD1F8 
2.28.1.9.496 OTU 2 seqs
prokMSA_id:6145 Rhodothalassium salexigens ATCC 35888 . M59070
prokMSA_id:56607 Rhodospirillaceae LA45 
2.28.1.10 SPHINGOMONAS_GROUP 129 seqs
2.28.1.10.1 SPG.YANOIKUYAE_SUBGROUP 10 seqs
2.28.1.10.1.497 OTU 4 seqs
prokMSA_id:6154 Sphingomonas sp. str. SS86. D16148
prokMSA_id:6164 Sphingomonas MBIC3990 str. MBIC3990
prokMSA_id:20630 clone CR99-2-53 
prokMSA_id:73997 Q3-24C5 AY048888
2.28.1.10.1.498 OTU 1 seq
prokMSA_id:37139 clone CRP99-49 
2.28.1.10.1.499 OTU 2 seqs
prokMSA_id:6183 Sphingomonas sp. str. VT1
prokMSA_id:73215 Sphingomonas cloacae AY151393
2.28.1.10.1.500 OTU 1 seq
prokMSA_id:90697 DSSD92 
2.28.1.10.1.501 OTU 1 seq
prokMSA_id:94385 clone F-OTU19 
2.28.1.10.1.502 OTU 1 seq
prokMSA_id:6148 Sphingomonas yanoikuyae IFO 15102
2.28.1.10.2 SPG.SP_STR_UN1F1_SUBGROUP 23 seqs
2.28.1.10.2.503 OTU 16 seqs
prokMSA_id:6200 Sphingomonas sp. str. BN6
prokMSA_id:6201 Sphingomonas MBIC3020 str. MBIC3020
prokMSA_id:6202 str. C7
prokMSA_id:50060 Sphingomonas sp. JS1 
prokMSA_id:75742 alpha clone S15A-MN75
prokMSA_id:86146 Alpha K-2062 parital 
prokMSA_id:88250 HOClCi74 
prokMSA_id:88252 HOClCi21 
prokMSA_id:88373 HOClCi48 
prokMSA_id:88648 HOClCi61 
prokMSA_id:89539 HOClCi68 
prokMSA_id:89926 HOClCi70 
prokMSA_id:90062 HOClCi38 
prokMSA_id:90123 HOClCi22 
prokMSA_id:90401 HOClCi5 
prokMSA_id:90506 HOClCi33 AY328582
2.28.1.10.2.504 OTU 4 seqs
prokMSA_id:17329 soil clone 845-2 
prokMSA_id:22476 Sphingomonas sp. BN6 
prokMSA_id:50868 soil clone 749-2 
prokMSA_id:93711 alpha clone JG36-GS-121
2.28.1.10.2.505 OTU 3 seqs
prokMSA_id:51138 Sphingobium sp. K40 
prokMSA_id:59512 Sphingomonas sp. A-O20-2 
prokMSA_id:59513 Sphingomonas sp. A-O20-1 
2.28.1.10.4 ZYM.MOBILIS_SUBGROUP 14 seqs
2.28.1.10.4.506 OTU 1 seq
prokMSA_id:6210 Zymomonas mobilis str. ZM4
2.28.1.10.4.507 OTU 2 seqs
prokMSA_id:6199 Pseudomonas Ant17 str. Ant17
prokMSA_id:30355 WD267 clone WD267
2.28.1.10.4.508 OTU 2 seqs
prokMSA_id:87167 Sphingomonas sp. J40 
prokMSA_id:87421 Sphingomonas sp. M2 
2.28.1.10.4.509 OTU 8 seqs
prokMSA_id:6209 Zymomonas mobilis subsp. mobilis ATCC 10988 . NONE
prokMSA_id:25242 Sphingomonas sp. strain:IFO 15914
prokMSA_id:28323 Zymomonas mobilis strain ATCC29192 
prokMSA_id:38516 Zymomonas mobilis strain ATCC29191 
prokMSA_id:39861 Zymomonas mobilis 
prokMSA_id:43499 Zymomonas mobilis strain ATCC10988 
prokMSA_id:47404 Zymomonas mobilis cosmid clone 65G3 
prokMSA_id:50955 Zymomonas mobilis rrnB operon ; RpfN rpfN complete cds; rrnC
2.28.1.10.4.510 OTU 1 seq
prokMSA_id:18013 Sphingomonas sp. K101 isolate K101
2.28.1.10.5 SPG.PAUCIMOBILIS_SUBGROUP 1 seq
2.28.1.10.5.511 OTU 1 seq
prokMSA_id:83813 alpha clone BPU225 
2.28.1.10.6 SPG.PRUNI_SUBGROUP 24 seqs
2.28.1.10.6.512 OTU 3 seqs
prokMSA_id:31857 clone CR99-2-73 
prokMSA_id:34362 soil clone 739-2 
prokMSA_id:76843 clone:KSR7
2.28.1.10.6.513 OTU 12 seqs
prokMSA_id:6221 Pseudomonas Ant20 str. Ant20
prokMSA_id:6248 Sphingomonas asaccharolytica IFO 10564. Y09639
prokMSA_id:31687 WD252 clone WD252
prokMSA_id:35516 clone CR98-24-71 
prokMSA_id:40332 Rhizomonas sp. K6 strain K6
prokMSA_id:44980 Sphingomonas sp. clone KL-2-4-7 
prokMSA_id:52593 Sphingomonas sp. MT1 
prokMSA_id:55900 Sphingomonas sp. eh2 
prokMSA_id:65328 Sphingomonas sp. ATCC 31555 
prokMSA_id:68657 clone KRA30-07 
prokMSA_id:86135 Sphingomonas sp. MN 18.3a strain MN 18.3a
prokMSA_id:94653 alpha- clone S15B-MN112
2.28.1.10.6.514 OTU 2 seqs
prokMSA_id:47031 Sphingomonas sp. strain:IFO 15497
prokMSA_id:70401 Sphingomonas aromaticivorans SMCC B0522 U20774
2.28.1.10.6.515 OTU 1 seq
prokMSA_id:87686 Sphingomonas sp. TB43 
2.28.1.10.6.516 OTU 1 seq
prokMSA_id:31402 WD286 clone WD286
2.28.1.10.6.517 OTU 1 seq
prokMSA_id:6234 Asticcacaulis excentricus ACM 1263
2.28.1.10.6.518 OTU 1 seq
prokMSA_id:6240 Caulobacter leidyi ATCC 15260
2.28.1.10.6.519 OTU 2 seqs
prokMSA_id:21753 Sphingomonas sp. strain:IFO 15496
prokMSA_id:87684 Sphingomonas sp. CT6 
2.28.1.10.6.520 OTU 1 seq
prokMSA_id:19856 Sphingomonas sp. strain:IFO 15495
2.28.1.10.7 RHZ.SUBERIFACIENS_SUBGROUP 1 seq
2.28.1.10.7.521 OTU 1 seq
prokMSA_id:6255 Rhizomonas suberifaciens IFO 15211
2.28.1.10.9 BLA.NATATORIA_SUBGROUP 1 seq
2.28.1.10.9.522 OTU 1 seq
prokMSA_id:89682 HOClCi56 
2.28.1.10.11 SPG.SUBARCTICA_SUBGROUP 17 seqs
2.28.1.10.11.523 OTU 1 seq
prokMSA_id:92490 Sphingomonas sp. oral clone FI012 
2.28.1.10.11.524 OTU 1 seq
prokMSA_id:75121 clone:KSS14
2.28.1.10.11.525 OTU 5 seqs
prokMSA_id:6297 str. from Lake Gossenkoellesee
prokMSA_id:6332 str. B712
prokMSA_id:18499 Sphingomonas herbicidovorans 
prokMSA_id:81853 clone SA69 
prokMSA_id:90104 DSSD76 
2.28.1.10.11.526 OTU 7 seqs
prokMSA_id:6263 Erythromonas QSSC5-6 str. QSSC5-6. AF170744
prokMSA_id:29325 Alpha F0813 
prokMSA_id:29930 Sphingomonadaceae clone KL-2-4-1 
prokMSA_id:32571 Sphingomonas sp. ML1 
prokMSA_id:37499 clone CR98-5-76 
prokMSA_id:66478 clone cvf70131 
prokMSA_id:90065 HOClCi32 
2.28.1.10.11.527 OTU 1 seq
prokMSA_id:18607 Novosphingomonas sp. ARI-1 
2.28.1.10.11.528 OTU 1 seq
prokMSA_id:24166 Sphingomonas sp. HL7 
2.28.1.10.11.529 OTU 1 seq
prokMSA_id:90739 DSSD97 
2.28.1.10.12 SPG.MACROGOLTABIDUS_SUBGROUP 33 seqs
2.28.1.10.12.530 OTU 1 seq
prokMSA_id:6320 Sphingomonas terrae str. E-1-A IFO 15098
2.28.1.10.12.531 OTU 1 seq
prokMSA_id:6313 Sphingomonas adhaesiva IFO 15099
2.28.1.10.12.532 OTU 1 seq
prokMSA_id:6327 Sphingomonas sp. str. RB2256
2.28.1.10.12.533 OTU 28 seqs
prokMSA_id:6326 Sphingomonas KT-1 str. KT-1
prokMSA_id:6328 Sphingomonas JSS-54 str. JSS-54
prokMSA_id:6329 Sphingomonas sp. str. MBIC3365
prokMSA_id:16401 clone t035 AF422605
prokMSA_id:18507 clone CR98-5-32 
prokMSA_id:19973 Sphingomonas alaska strain RB2515 AF145753
prokMSA_id:29565 clone CR98-5-57 
prokMSA_id:29887 clone CR99-2-13 
prokMSA_id:31367 Sphingomonas sp. SA-3 
prokMSA_id:32470 clone P3OU-37 
prokMSA_id:40084 Sphingomonas alaskensis strain AF01 
prokMSA_id:42377 Sphingomonas alaskensis strain RB2256 
prokMSA_id:43535 Sphingomonas sp. CZ7 isolate CZ7
prokMSA_id:44192 Sphingomonas sp. strain:IFO 15917
prokMSA_id:45857 Sphingopyxis witflariensis 
prokMSA_id:55502 Sphingomonas sp. LCSAOTU29 
prokMSA_id:60721 Monochloroacetic-acid-degrading MCAA3 
prokMSA_id:66292 Sphingomonas sp. LCSAOTU17 
prokMSA_id:66835 Sphingomonas sp. S37 
prokMSA_id:68620 clone KRA30+14 
prokMSA_id:74035 Sphingomonas sp. JRL-5 AF181572
prokMSA_id:78445 Phenanthrene-degrading M20 
prokMSA_id:79081 Sphingomonas sp. 86 
prokMSA_id:81691 Sphingomonas sp. EVA17 
prokMSA_id:85896 Alpha K-2042 parital AB107147
prokMSA_id:92009 Sphingopyxis alaskensis 
prokMSA_id:94622 clone F-OTU3 
prokMSA_id:94682 clone T-OTU7 
2.28.1.10.12.534 OTU 2 seqs
prokMSA_id:6246 Afipia genosp. 11 str. G9070
prokMSA_id:60514 Sphingomonas sp. B18 
2.28.1.10.13 ERB.LONGUS_SUBGROUP 5 seqs
2.28.1.10.13.535 OTU 1 seq
prokMSA_id:98237 clone F9 
2.28.1.10.13.536 OTU 3 seqs
prokMSA_id:37154 isolate AH76 
prokMSA_id:38661 alpha clone SM2B05 
prokMSA_id:60586 clone B10 
2.28.1.10.13.537 OTU 1 seq
prokMSA_id:88266 DSSD39 
2.28.2 BETA_SUBDIVISION 1283 seqs
2.28.2.1 NEISSERIA_GROUP 281 seqs
2.28.2.1.2 MVR.AERODENITRIFICANS_SUBGROUP 56 seqs
2.28.2.1.2.538 OTU 1 seq
prokMSA_id:64884 Aquaspirillum putridiconchylium 
2.28.2.1.2.539 OTU 2 seqs
prokMSA_id:87861 Chitinibacter tainanensis strain BCRC 17254 complete 
prokMSA_id:91097 H2 AY345552
2.28.2.1.2.540 OTU 53 seqs
prokMSA_id:21465 Neisseria meningitidis strain M1533 
prokMSA_id:24959 Neisseria meningitidis strain M4214 
prokMSA_id:40320 Neisseria meningitidis strain N117/89 
prokMSA_id:47819 Neisseria meningitidis strain N171/88 
prokMSA_id:48661 Neisseria meningitidis strain NZ3968 
prokMSA_id:56689 Neisseria meningitidis strain M1153 
prokMSA_id:59572 Neisseria meningitidis strain M8589 
prokMSA_id:59577 Neisseria meningitidis strain M8578 
prokMSA_id:59578 Neisseria meningitidis strain M8592 
prokMSA_id:59587 Neisseria meningitidis strain M8590 
prokMSA_id:59590 Neisseria meningitidis strain M8577 
prokMSA_id:59594 Neisseria meningitidis strain M8572 
prokMSA_id:59603 Neisseria meningitidis strain M8575 
prokMSA_id:59605 Neisseria meningitidis strain M8600 
prokMSA_id:59606 Neisseria meningitidis strain M8563 
prokMSA_id:59617 Neisseria meningitidis strain M9025 
prokMSA_id:59620 Neisseria meningitidis strain M9022 
prokMSA_id:59622 Neisseria meningitidis strain M9028 
prokMSA_id:59626 Neisseria meningitidis strain M9030 
prokMSA_id:60509 Neisseria meningitidis strain M574 
prokMSA_id:60511 Neisseria meningitidis strain M1141 
prokMSA_id:60517 Neisseria meningitidis strain M4643 
prokMSA_id:60520 Neisseria meningitidis strain M1010 
prokMSA_id:60521 Neisseria meningitidis strain M4211 
prokMSA_id:60522 Neisseria meningitidis strain M4647 
prokMSA_id:62778 Neisseria meningitidis strain M7744 
prokMSA_id:62779 Neisseria meningitidis strain M7741 
prokMSA_id:62780 Neisseria meningitidis strain M7748 
prokMSA_id:62781 Neisseria meningitidis strain M7740 
prokMSA_id:62782 Neisseria meningitidis strain M7736 
prokMSA_id:62783 Neisseria meningitidis strain M7737 
prokMSA_id:62784 Neisseria meningitidis strain M7717 
prokMSA_id:62785 Neisseria meningitidis strain M7714 
prokMSA_id:62786 Neisseria meningitidis strain M7732 
prokMSA_id:62787 Neisseria meningitidis strain M7727 
prokMSA_id:62803 Neisseria meningitidis strain M1168 
prokMSA_id:65953 Neisseria meningitidis strain M7925 
prokMSA_id:66305 Aquaspirillum serpens 
prokMSA_id:73420 Neisseria meningitidis strain M1531 AF310557
prokMSA_id:74919 Neisseria meningitidis strain N.113/00 
prokMSA_id:75010 Neisseria meningitidis strain N.1043/01 
prokMSA_id:75870 Neisseria meningitidis strain N.381/92 
prokMSA_id:76018 Neisseria meningitidis strain N.195/91 
prokMSA_id:76096 Neisseria meningitidis strain N.1080/94 
prokMSA_id:76241 Neisseria meningitidis strain N.374/96 
prokMSA_id:76592 Neisseria meningitidis strain N.483/00 
prokMSA_id:76597 Neisseria meningitidis strain N.1101/95 
prokMSA_id:77012 Neisseria meningitidis strain N.539/95 
prokMSA_id:77115 Neisseria meningitidis strain N.451/91 
prokMSA_id:77133 Neisseria meningitidis strain N.188/91 
prokMSA_id:83998 Neisseria meningitidis strain N.541/97 
prokMSA_id:84678 Neisseria meningitidis strain N.689/01 
prokMSA_id:85108 Neisseria meningitidis strain N.934/01 
2.28.2.1.4 CRB.VIOLACEUM_SUBGROUP 17 seqs
2.28.2.1.4.541 OTU 17 seqs
prokMSA_id:6374 str. MBIC3903
prokMSA_id:22255 beta clone:OS1L-24
prokMSA_id:56639 Chromobacterium sp. 27 complete 
prokMSA_id:63483 Chromobacterium sp. 70 complete 
prokMSA_id:63486 Chromobacterium sp. 67 complete 
prokMSA_id:63488 Chromobacterium sp. 62 complete 
prokMSA_id:63489 Chromobacterium sp. 53 complete 
prokMSA_id:63490 Chromobacterium sp. 44 complete 
prokMSA_id:63491 Chromobacterium sp. 32 complete 
prokMSA_id:63492 Chromobacterium sp. 06 complete 
prokMSA_id:63493 Chromobacterium sp. 21 complete 
prokMSA_id:63494 Chromobacterium sp. 46 complete 
prokMSA_id:63495 Chromobacterium sp. 29 complete AY117558
prokMSA_id:63497 Chromobacterium sp. 23 complete 
prokMSA_id:63500 Chromobacterium sp. 64 complete AY117555
prokMSA_id:63505 Chromobacterium sp. 48 complete AY117552
prokMSA_id:91724 G5_GreenLake 
2.28.2.1.9 NIS.GONORRHOEAE_SUBGROUP 208 seqs
2.28.2.1.9.542 OTU 3 seqs
prokMSA_id:6477 Eikenella corrodens ATCC 23834 . M22512
prokMSA_id:49446 Eikenella corrodens AF320620
prokMSA_id:87506 Eikenella sp. MDA2346-4 
2.28.2.1.9.543 OTU 3 seqs
prokMSA_id:50919 Neisseria sp. oral clone AP015 
prokMSA_id:72429 Neisseria sp. oral clone AP085 AY005023
prokMSA_id:73021 Neisseria sp. oral clone AP067 AY005024
2.28.2.1.9.544 OTU 110 seqs
prokMSA_id:6378 Neisseria canis str. H6 ATCC 14687 . L06170
prokMSA_id:6383 Neisseria meningitidis str. 418
prokMSA_id:6387 Kingella denitrificans ATCC 33394 . M22516
prokMSA_id:6396 Neisseria weaveri CDC 8142
prokMSA_id:6402 Neisseria elongata ATCC 25295 . L06171
prokMSA_id:6412 Neisseria meningitidis str. serotype A ATCC 13077
prokMSA_id:6456 Neisseria elongata. NONE
prokMSA_id:6473 Kingella denitrificans str. UB-294 CCUG 28284. L06166
prokMSA_id:6475 Neisseria sicca. U02903
prokMSA_id:16455 Neisseria meningitidis strain M7260 
prokMSA_id:16709 Neisseria meningitidis strain M2795 
prokMSA_id:16816 Neisseria meningitidis strain M4028 
prokMSA_id:16842 Neisseria meningitidis strain M7139 
prokMSA_id:18295 Neisseria meningitidis strain M7100 
prokMSA_id:18792 Neisseria meningitidis strain M4663 
prokMSA_id:18892 Neisseria meningitidis strain M7293 
prokMSA_id:18996 Neisseria sp. oral clone AP060 
prokMSA_id:19723 Neisseria meningitidis strain M3729 
prokMSA_id:20191 Neisseria meningitidis strain M2788 
prokMSA_id:20767 Neisseria meningitidis strain M6477 
prokMSA_id:21847 Neisseria meningitidis strain M2642 
prokMSA_id:25767 Neisseria meningitidis strain M5391 
prokMSA_id:26013 Neisseria meningitidis strain M7092 
prokMSA_id:29168 Neisseria meningitidis strain M1163 
prokMSA_id:31070 Neisseria meningitidis strain M2726 AF310581
prokMSA_id:32023 Neisseria meningitidis strain M2786 
prokMSA_id:32430 Neisseria meningitidis strain M2540 
prokMSA_id:32518 Neisseria meningitidis strain M3388 
prokMSA_id:33255 Neisseria meningitidis strain N218/89 
prokMSA_id:34272 Neisseria meningitidis strain M2635 
prokMSA_id:35344 Neisseria meningitidis strain M1367 
prokMSA_id:35579 Neisseria meningitidis strain M7084 
prokMSA_id:36272 Neisseria meningitidis strain M4041 
prokMSA_id:38755 Neisseria meningitidis strain M128 
prokMSA_id:39114 Neisseria meningitidis strain M2783 
prokMSA_id:39242 Neisseria meningitidis strain M2637 
prokMSA_id:39650 Neisseria sp. oral clone AP132 
prokMSA_id:39827 Neisseria meningitidis strain M7290 
prokMSA_id:41583 Neisseria meningitidis strain M8562 
prokMSA_id:41646 Neisseria meningitidis strain M7259 
prokMSA_id:42501 Neisseria meningitidis strain M26 
prokMSA_id:43583 Neisseria meningitidis strain M2781 
prokMSA_id:44724 Neisseria meningitidis strain M4015 
prokMSA_id:45310 Neisseria meningitidis serogroup A strain Z2491 complete gen
prokMSA_id:46628 Neisseria meningitidis strain M2782 
prokMSA_id:47569 Neisseria meningitidis strain M7060 
prokMSA_id:47636 Neisseria meningitidis strain M2725 
prokMSA_id:47816 Neisseria meningitidis strain M4775 
prokMSA_id:48453 Neisseria meningitidis strain M7086 
prokMSA_id:49696 Neisseria meningitidis strain M6266 
prokMSA_id:51363 Neisseria meningitidis strain M1366 
prokMSA_id:51456 Neisseria meningitidis strain M6095 
prokMSA_id:51956 Neisseria weaveri isolate VA6362grgr_2001 
prokMSA_id:52086 Neisseria meningitidis serogroup A strain Z2491 complete gen
prokMSA_id:52091 Neisseria meningitidis strain M2727 AF310582
prokMSA_id:52412 Neisseria meningitidis strain M4660 
prokMSA_id:52639 Neisseria meningitidis strain M7126 
prokMSA_id:55399 Neisseria meningitidis strain M8591 
prokMSA_id:55486 Alysiella filiformis ATCC 15532 complete 
prokMSA_id:55968 Neisseria meningitidis strain M8561 
prokMSA_id:56579 Neisseria meningitidis strain M9267 
prokMSA_id:58397 Neisseria meningitidis serogroup A strain Z2491 complete gen
prokMSA_id:58398 Neisseria meningitidis serogroup A strain Z2491 complete gen
prokMSA_id:58399 Neisseria meningitidis serogroup A strain Z2491 complete gen
prokMSA_id:59576 Neisseria meningitidis strain M8584 
prokMSA_id:59588 Neisseria meningitidis strain M8556 
prokMSA_id:59589 Neisseria meningitidis strain M8555 
prokMSA_id:59595 Neisseria meningitidis strain M8560 
prokMSA_id:59602 Neisseria meningitidis strain M8574 
prokMSA_id:59608 Neisseria meningitidis strain M8565 
prokMSA_id:59618 Neisseria meningitidis strain M9021 
prokMSA_id:59619 Neisseria meningitidis strain M9023 
prokMSA_id:59627 Neisseria meningitidis strain M9032 
prokMSA_id:59644 Neisseria meningitidis strain M7883 
prokMSA_id:59654 Neisseria meningitidis strain M9266 
prokMSA_id:59663 Neisseria meningitidis strain M9285 
prokMSA_id:60507 Neisseria meningitidis strain M2671 
prokMSA_id:62752 Neisseria meningitidis strain M8368F10 
prokMSA_id:62765 Neisseria meningitidis strain M7931 
prokMSA_id:62770 Neisseria meningitidis strain M7509 
prokMSA_id:62777 Neisseria meningitidis strain M7918 
prokMSA_id:62789 Neisseria meningitidis strain M7501 
prokMSA_id:62790 Neisseria meningitidis strain M7510 
prokMSA_id:62791 Neisseria meningitidis strain M1472 
prokMSA_id:62802 Neisseria meningitidis strain M812 
prokMSA_id:63985 Neisseria denitrificans strain:IAM 14975
prokMSA_id:63986 Alysiella filiformis strain:IAM 14895
prokMSA_id:65954 Neisseria meningitidis strain M7888 
prokMSA_id:65958 Neisseria meningitidis strain M7855 
prokMSA_id:65964 Neisseria meningitidis strain M7902 
prokMSA_id:65967 Neisseria meningitidis strain M7591 
prokMSA_id:65968 Neisseria meningitidis strain M7590 
prokMSA_id:65972 Neisseria meningitidis strain M7801 
prokMSA_id:65973 Neisseria meningitidis strain M7800 
prokMSA_id:65974 Neisseria meningitidis strain M7799 
prokMSA_id:65975 Neisseria meningitidis strain M7798 
prokMSA_id:65976 Neisseria meningitidis strain M7797 
prokMSA_id:65977 Neisseria meningitidis strain M7795 
prokMSA_id:65978 Neisseria meningitidis strain M7796 
prokMSA_id:65979 Neisseria meningitidis strain M7794 
prokMSA_id:65980 Neisseria meningitidis strain M7542 
prokMSA_id:65981 Neisseria meningitidis strain M7339 
prokMSA_id:65982 Neisseria meningitidis strain M7221 
prokMSA_id:70564 Neisseria meningitidis strain M7860 AF382305
prokMSA_id:72444 Neisseria meningitidis strain M4648 AF310545
prokMSA_id:73049 sp. oral clone EW049 AF385496
prokMSA_id:74115 sp. oral clone EW053 AF385498
prokMSA_id:74719 Neisseria meningitidis strain M1154 
prokMSA_id:76751 beta clone S15A-MN33
prokMSA_id:92425 Neisseria genomosp. P1 clone P4PC_20 
2.28.2.1.9.545 OTU 1 seq
prokMSA_id:53370 Simonsiella crassa strain ATCC29448 
2.28.2.1.9.546 OTU 83 seqs
prokMSA_id:6375 Vitreoscilla stercoraria ATCC 15218 . L06174
prokMSA_id:6376 Vitreoscilla stercoraria str. VT1. M22519
prokMSA_id:17115 Neisseria meningitidis strain H355 
prokMSA_id:19847 Neisseria meningitidis strain 539Ch 
prokMSA_id:21424 Neisseria meningitidis strain M3005 
prokMSA_id:26122 Neisseria meningitidis strain N106/89 
prokMSA_id:27717 Neisseria meningitidis strain N348/88 
prokMSA_id:28018 Neisseria meningitidis strain N150/88 
prokMSA_id:30250 Neisseria meningitidis strain CU385 
prokMSA_id:30770 Neisseria meningitidis strain N157/86 
prokMSA_id:34108 Neisseria meningitidis strain M262 
prokMSA_id:38242 Neisseria meningitidis strain N44/89 
prokMSA_id:38467 Neisseria meningitidis strain N49/88 
prokMSA_id:38514 Neisseria meningitidis strain BB393 
prokMSA_id:43867 Neisseria meningitidis strain H276 
prokMSA_id:44511 Neisseria meningitidis strain M5178 
prokMSA_id:46303 Neisseria meningitidis serogroup B strain MC58 complete geno
prokMSA_id:52748 Neisseria meningitidis strain F51/90 
prokMSA_id:55802 Neisseria meningitidis strain M7923 
prokMSA_id:55997 Neisseria meningitidis strain M9095 
prokMSA_id:56107 Neisseria meningitidis strain M8861 
prokMSA_id:56213 Neisseria meningitidis strain N.731/91 
prokMSA_id:59579 Neisseria meningitidis strain M8598 
prokMSA_id:59581 Neisseria meningitidis strain M8595 
prokMSA_id:59583 Neisseria meningitidis strain M8587 
prokMSA_id:59584 Neisseria meningitidis strain M8596 
prokMSA_id:59585 Neisseria meningitidis strain M8597 
prokMSA_id:59591 Neisseria meningitidis strain M8601 
prokMSA_id:59592 Neisseria meningitidis strain M8594 
prokMSA_id:59596 Neisseria meningitidis strain M8559 
prokMSA_id:59599 Neisseria meningitidis strain M8570 
prokMSA_id:59612 Neisseria meningitidis strain M8798 
prokMSA_id:59613 Neisseria meningitidis strain M8799 
prokMSA_id:59614 Neisseria meningitidis strain M8800 
prokMSA_id:59615 Neisseria meningitidis strain M8829 
prokMSA_id:59616 Neisseria meningitidis strain M8830 
prokMSA_id:59624 Neisseria meningitidis strain M9031 
prokMSA_id:59630 Neisseria meningitidis strain M9099 
prokMSA_id:59632 Neisseria meningitidis strain M9098 
prokMSA_id:59634 Neisseria meningitidis strain M9096 
prokMSA_id:60515 Neisseria meningitidis strain M5798 
prokMSA_id:60523 Neisseria meningitidis strain M5182 
prokMSA_id:60524 Neisseria meningitidis strain M5199 
prokMSA_id:60525 Neisseria meningitidis strain M2929 
prokMSA_id:60526 Neisseria meningitidis strain M5193 
prokMSA_id:60527 Neisseria meningitidis strain M2934 
prokMSA_id:60528 Neisseria meningitidis strain M2916 
prokMSA_id:60529 Neisseria meningitidis strain M2922 
prokMSA_id:60530 Neisseria meningitidis strain M2925 
prokMSA_id:60531 Neisseria meningitidis strain M4210 
prokMSA_id:60532 Neisseria meningitidis strain M5203 
prokMSA_id:60533 Neisseria meningitidis strain M2932 
prokMSA_id:60534 Neisseria meningitidis strain M4094 
prokMSA_id:60535 Neisseria meningitidis strain M4209 
prokMSA_id:60536 Neisseria meningitidis strain M3030 
prokMSA_id:60537 Neisseria meningitidis strain M4102 
prokMSA_id:60538 Neisseria meningitidis strain M4215 
prokMSA_id:60540 Neisseria meningitidis strain M1019 
prokMSA_id:62764 Neisseria meningitidis strain M7919 
prokMSA_id:62767 Neisseria meningitidis strain M7921 
prokMSA_id:62804 Neisseria meningitidis strain M7541 
prokMSA_id:62805 Neisseria meningitidis strain M7722 
prokMSA_id:62806 Neisseria meningitidis strain M7719 
prokMSA_id:62807 Neisseria meningitidis strain M7932 
prokMSA_id:62808 Neisseria meningitidis strain M7924 
prokMSA_id:62809 Neisseria meningitidis strain M7733 
prokMSA_id:62810 Neisseria meningitidis strain M7920 
prokMSA_id:62811 Neisseria meningitidis strain M7729 
prokMSA_id:62812 Neisseria meningitidis strain M7723 
prokMSA_id:62813 Neisseria meningitidis strain M7928 
prokMSA_id:62814 Neisseria meningitidis strain M7743 
prokMSA_id:62815 Neisseria meningitidis strain M7922 
prokMSA_id:62816 Neisseria meningitidis strain M7725 
prokMSA_id:62817 Neisseria meningitidis strain M7731 
prokMSA_id:62818 Neisseria meningitidis strain M7930 
prokMSA_id:62819 Neisseria meningitidis strain M4580 
prokMSA_id:62820 Neisseria meningitidis strain M4219 
prokMSA_id:62822 Neisseria meningitidis strain M463 
prokMSA_id:69908 Neisseria meningitidis strain M9097 AY132085
prokMSA_id:70307 Neisseria meningitidis strain M7721 AF398289
prokMSA_id:72478 Neisseria meningitidis strain M1417 AF409941
prokMSA_id:74921 Neisseria meningitidis strain N.995/01 
prokMSA_id:76052 Neisseria meningitidis strain N.394/99 
2.28.2.1.9.547 OTU 2 seqs
prokMSA_id:42684 Neisseria sp. oral clone AK105 
prokMSA_id:53569 Neisseria sp. oral strain B33KA 
2.28.2.1.9.548 OTU 4 seqs
prokMSA_id:6415 Neisseria animalis str. NA1 ATCC 19573. L06172
prokMSA_id:62758 Neisseria meningitidis strain M8236 
prokMSA_id:62759 Neisseria meningitidis strain M8237 AF398320
prokMSA_id:78528 Neisseria meningitidis strain N.1180/95 
2.28.2.1.9.549 OTU 2 seqs
prokMSA_id:6432 Neisseria polysaccharea ATCC 43768 . L06167
prokMSA_id:25266 Neisseria meningitidis strain M3742 
2.28.2.3 METHYLOPHILUS_GROUP 10 seqs
2.28.2.3.550 OTU 1 seq
prokMSA_id:26540 clone CRD99-01 
2.28.2.3.551 OTU 5 seqs
prokMSA_id:6486 Methylophilus arc33
prokMSA_id:6587 str. LD28
prokMSA_id:6824 Taylorella asinigenitalis UCD 1
prokMSA_id:30921 Taylorella asinigenitalis strain UK-1 
prokMSA_id:48585 Taylorella asinigenitalis strain UK-2 
2.28.2.3.552 OTU 1 seq
prokMSA_id:50624 beta clone BIki2
2.28.2.3.553 OTU 3 seqs
prokMSA_id:6485 clone OM43
prokMSA_id:26282 ECS39 
prokMSA_id:48715 marine ZD0202 
2.28.2.4 NITROSOMONAS_GROUP 30 seqs
2.28.2.4.1 GALLIONELLA_ASSEMBLAGE 4 seqs
2.28.2.4.1.554 OTU 3 seqs
prokMSA_id:32326 Banisveld landfill BVC68 
prokMSA_id:42997 Banisveld landfill BVC12 
prokMSA_id:70708 clone GIF16 AF407205
2.28.2.4.1.555 OTU 1 seq
prokMSA_id:21368 clone GOUTA12 
2.28.2.4.3 NSS.MULTIFORMIS_SUBGROUP 11 seqs
2.28.2.4.3.556 OTU 1 seq
prokMSA_id:75426 clone:KCR17
2.28.2.4.3.557 OTU 1 seq
prokMSA_id:43046 beta GC152 
2.28.2.4.3.558 OTU 2 seqs
prokMSA_id:22882 glc18 
prokMSA_id:45625 beta SBR1009 
2.28.2.4.3.559 OTU 6 seqs
prokMSA_id:6540 Nitrosomonas sp. str. JL21
prokMSA_id:19771 Nitrosomonas sp. R7c155 AF386751
prokMSA_id:28030 Nitrosomonas sp. R7c187 
prokMSA_id:35222 Nitrosomonas sp. R7c131 
prokMSA_id:37793 Nitrosomonas sp. R7c140 
prokMSA_id:74278 Nitrosomonas sp. Nm80 AY123798
2.28.2.4.3.560 OTU 1 seq
prokMSA_id:49900 clone CR98-24-14 
2.28.2.4.6 NMN.EUROPAEA_SUBGROUP 15 seqs
2.28.2.4.6.561 OTU 1 seq
prokMSA_id:46231 Nitrosomonas europaea 
2.28.2.4.6.562 OTU 14 seqs
prokMSA_id:6642 Nitrosomonas sp. str. GH22
prokMSA_id:6643 Nitrosomonas sp. str. HPC101
prokMSA_id:6644 Nitrosomonas sp. AJ224410
prokMSA_id:18945 beta clone BIvii9
prokMSA_id:21019 Nitrosomonas sp. TK794 AB031960
prokMSA_id:27293 Nitrosomonas sp. IWT514 
prokMSA_id:33788 Nitrosomonas sp. IWT202 
prokMSA_id:44831 Nitrosomonas sp. CNS326 
prokMSA_id:47242 Nitrosomonas sp. G1 
prokMSA_id:50735 Nitrosomonas sp. DYS317 
prokMSA_id:69328 Nitrosomonas eutropha 
prokMSA_id:82338 Ammonia-oxidizing NS500-9 
prokMSA_id:94466 clone T-OTU1 
prokMSA_id:94607 clone T-OTU4 
2.28.2.5 AZOARCUS_GROUP 167 seqs
2.28.2.5.2 HGH.THERMOLUTEOLUS_SUBGROUP 2 seqs
2.28.2.5.2.563 OTU 2 seqs
prokMSA_id:6676 clone WCHA1-52
prokMSA_id:94005 beta clone JG36-GS-97
2.28.2.5.3 DCL.AGITATUS_SUBGROUP 3 seqs
2.28.2.5.3.564 OTU 1 seq
prokMSA_id:45335 SA31 
2.28.2.5.3.565 OTU 1 seq
prokMSA_id:43118 SA35 
2.28.2.5.3.566 OTU 1 seq
prokMSA_id:59921 Rhodocyclaceae clone ccs272 
2.28.2.5.5 RCY.TENUIS_SUBGROUP 20 seqs
2.28.2.5.5.567 OTU 2 seqs
prokMSA_id:37014 SA20 
prokMSA_id:47130 SA25 
2.28.2.5.5.568 OTU 18 seqs
prokMSA_id:6714 Azoarcus 6a3 str. 6a3
prokMSA_id:6715 Azoarcus BS2-3 str. BS2-3
prokMSA_id:6716 Dechlorisoma Iso1 str. Iso1
prokMSA_id:6722 Dechlorisoma suilla str. PS
prokMSA_id:6723 Dechlorisoma SDGM str. SDGM
prokMSA_id:6724 Dechlorisoma Iso2 str. Iso2
prokMSA_id:35520 Dechlorosoma sp. KJ AF323491
prokMSA_id:59899 beta clone ccslm36 
prokMSA_id:60759 Dechlorosoma sp. PCC 
prokMSA_id:68713 clone p56 
prokMSA_id:76627 beta clone S15A-MN2
prokMSA_id:76735 beta clone S15A-MN34 AJ534659
prokMSA_id:76846 beta clone S15A-MN28
prokMSA_id:77054 beta clone S15A-MN6
prokMSA_id:77217 beta clone S15A-MN93
prokMSA_id:94470 beta- clone S15B-MN115
prokMSA_id:94487 beta- clone S15B-MN108
prokMSA_id:95050 beta- clone S15B-MN110
2.28.2.5.6 DG.ZOOGLOEOIDES_SUBGROUP_II 54 seqs
2.28.2.5.6.569 OTU 1 seq
prokMSA_id:19637 sp. sbr-gs25 
2.28.2.5.6.570 OTU 26 seqs
prokMSA_id:6735 clone SJA-21. AJ009455
prokMSA_id:18572 sludge H13 
prokMSA_id:19867 sludge H7 
prokMSA_id:19927 sludge H22 
prokMSA_id:20735 sp. sbr-gs26 
prokMSA_id:21051 clone PDS1 
prokMSA_id:21307 sp. sbr-gs24 
prokMSA_id:22275 sludge A16 
prokMSA_id:22374 sp. sbr-gs14 
prokMSA_id:25035 sludge S21 
prokMSA_id:34086 PHOS-HC20 
prokMSA_id:37405 sludge H11 
prokMSA_id:37845 sludge H40 AF234704
prokMSA_id:40129 sludge H10 
prokMSA_id:45043 sludge H27 
prokMSA_id:45544 sp. sbr-gs21 
prokMSA_id:59335 clone HP1A03 
prokMSA_id:62948 clone LPU93 
prokMSA_id:62956 clone LPU33 
prokMSA_id:62958 clone LPU11 
prokMSA_id:62961 clone LPU01 
prokMSA_id:70359 Zoogloea resiniphila strain PIV-3C2y AJ505854
prokMSA_id:70483 Zoogloea resiniphila strain PIV-3A2w AJ505851
prokMSA_id:72759 Zoogloea resiniphila strain PIV-3C2w AJ505853
prokMSA_id:73489 Zoogloea resiniphila strain PIV-3A2y AJ505852
prokMSA_id:81696 clone SD102 
2.28.2.5.6.571 OTU 26 seqs
prokMSA_id:7533 Thiocapsa roseopersicina str. M11
prokMSA_id:7534 Thiocapsa roseopersicina str. 1711
prokMSA_id:7801 Pseudomonas pictorum ATCC 23328. AB021392
prokMSA_id:7802 Pseudomonas geniculata ATCC 19374. AB021404
prokMSA_id:7803 Pseudomonas hibiscicola ATCC 19867. AB021405
prokMSA_id:7804 Pseudomonas beteli ATCC 19861. AB021406
prokMSA_id:7819 Stenotrophomonas maltophilia LMG 10879. AJ131903
prokMSA_id:7876 Xanthomonas campestris str. Xc17
prokMSA_id:19780 clone UASB_brew_B12 
prokMSA_id:25151 Chromatium sp. NZ 
prokMSA_id:29468 Xanthomonas sp. 36A 
prokMSA_id:38230 Stenotrophomonas maltophilia 
prokMSA_id:48652 Stenotrophomonas sp. 1264b AB054968
prokMSA_id:59922 gamma clone ccs2170 
prokMSA_id:61805 gamma clone CLs90 AF529355
prokMSA_id:61818 gamma clone CLs71 
prokMSA_id:62420 gamma clone FTL204 AF529094
prokMSA_id:63468 Stenotrophomonas sp. P1A 
prokMSA_id:66107 beta clone:KU34
prokMSA_id:71389 T.roseopersicina Y12298
prokMSA_id:81039 clone KD2-14 
prokMSA_id:82453 Stenotrophomonas sp. S1 
prokMSA_id:91531 clone LWS-P3 AY345536
prokMSA_id:93887 gamma clone KCM-B-65
prokMSA_id:93932 gamma- clone Gitt-GS-126
prokMSA_id:94070 gamma clone KCM-B-26 AJ581599
2.28.2.5.6.572 OTU 1 seq
prokMSA_id:34879 beta clone BIfci36
2.28.2.5.7 THA.AROMATICA_SUBGROUP 21 seqs
2.28.2.5.7.573 OTU 20 seqs
prokMSA_id:6749 str. 72Chol
prokMSA_id:7511 Beggiatoa 'Bay of Concepcion' str. Bay of Concepcion. AF0359
prokMSA_id:7591 Achromatium oxaliferum
prokMSA_id:7592 Achromatium oxaliferum
prokMSA_id:7595 Achromatium HK9
prokMSA_id:7596 Achromatium HK13
prokMSA_id:8394 str. HTA554. AB002656
prokMSA_id:22562 clone CR98-35-15 AF428897
prokMSA_id:25337 Vestimentiferan symbiont TW-6 AB042418
prokMSA_id:25582 clone CR99-7-16 
prokMSA_id:26300 clone CR98-5-52 
prokMSA_id:33520 clone CR99-2-44 
prokMSA_id:36692 clone CR99-24-73 
prokMSA_id:45723 clone CR98-5-42 
prokMSA_id:46187 clone CR98-35-63 
prokMSA_id:46237 clone CR98-5-45 
prokMSA_id:73052 Beta BP-5 
prokMSA_id:75848 clone HC-32 AY168742
prokMSA_id:93931 beta- clone Gitt-GS-125
prokMSA_id:96029 clone mv13.2 AY424823
2.28.2.5.7.574 OTU 1 seq
prokMSA_id:30710 beta clone 36-9 
2.28.2.5.8 AZC.INDIGENS_SUBGROUP 67 seqs
2.28.2.5.8.575 OTU 5 seqs
prokMSA_id:37585 Candidatus Procabacter acanthamoebae 
prokMSA_id:43515 Candidatus Procabacter sp. P23 
prokMSA_id:45071 Candidatus Procabacter sp. UWE2 
prokMSA_id:51448 Candidatus Procabacter sp. TUMSJ-341 
prokMSA_id:52040 Candidatus Procabacter sp. UWC6 
2.28.2.5.8.576 OTU 60 seqs
prokMSA_id:6731 Duganella zoogloeoides IAM 12136. D14254
prokMSA_id:6732 Duganella zoogloeoides str. 235 N.C. Dondero ATCC 19324
prokMSA_id:6733 Duganella zoogloeoides ATCC 19544. X74913
prokMSA_id:6748 Pseudomonas butanovora IAM 12574. AB021377
prokMSA_id:6750 Thauera terpenica str. 58Eu DSM 12139
prokMSA_id:6751 clone SJA-186
prokMSA_id:6757 Thauera aromatica str. K172 clone K1 DSM 6984
prokMSA_id:6759 Thauera aromatica str. 3CB-1. AF123264
prokMSA_id:6760 Azoarcus mXyN1 str. mXyN1. X83533
prokMSA_id:6761 Thauera mechernichii str. TL1
prokMSA_id:6762 Thauera selenatis str. Ax ATCC 55363
prokMSA_id:6766 Azoarcus denitrificians str. Td-15. L33688
prokMSA_id:6771 Azoarcus 22Lin str. 22Lin
prokMSA_id:6774 Azoarcus PbN1 str. PbN1
prokMSA_id:6775 Azoarcus tolulyticus str. Tol-4
prokMSA_id:6777 Azoarcus sp. str. M3
prokMSA_id:6778 Azoarcus tolulyticus str. BL11
prokMSA_id:6779 Azoarcus toluclasticus str. MF7
prokMSA_id:6780 Azoarcus toluclasticus str. MF63
prokMSA_id:6781 Azoarcus denitrificians str. Td-17. L33689
prokMSA_id:6782 Azoarcus denitrificians str. Td-3. L33693
prokMSA_id:6784 Azoarcus denitrificians str. Td-21. L33692
prokMSA_id:6785 Azoarcus evansii str. KB740 DSM 6898
prokMSA_id:6786 clone S3
prokMSA_id:6787 clone H25
prokMSA_id:6789 clone A2-33. AF072925
prokMSA_id:6791 Azoarcus ToN1 str. ToN1
prokMSA_id:6796 Azoarcus FL05 str. FL05
prokMSA_id:6799 clone S23
prokMSA_id:6807 Azoarcus denitrificians str. Td-19. L33690
prokMSA_id:6809 Azoarcus denitrificians str. Td-2. L33691
prokMSA_id:18363 clone PN6 
prokMSA_id:22130 Thauera aromatica strain LG356
prokMSA_id:23705 Thauera aromatica strain 3CB2 
prokMSA_id:25264 Thauera sp. B4P strain B4P
prokMSA_id:27601 Thauera aromatica strain SP
prokMSA_id:27927 Denitromonas aromaticus 
prokMSA_id:29499 clone PN1 AF387323
prokMSA_id:30791 Azoarcus tolulyticus strain 4FB10 
prokMSA_id:33923 clone CRD99-46 
prokMSA_id:36489 clone CR99-24-36 
prokMSA_id:36677 Thauera aromatica strain 3BB1 AF229887
prokMSA_id:36782 beta SBR1011 
prokMSA_id:38171 beta SBR1022 
prokMSA_id:40990 Thauera sp. S2 strain S2
prokMSA_id:44225 Azoarcus sp. CC-11 
prokMSA_id:44747 Thauera aromatica strain S100
prokMSA_id:47981 sludge H35 
prokMSA_id:49117 sludge S10 
prokMSA_id:51917 Azoarcus tolulyticus strain 2FB2 
prokMSA_id:58572 Thauera sp. PIV-1 strain PIV-1
prokMSA_id:59917 beta clone ccs250 AY133073
prokMSA_id:63593 Thauera sp. DNT-1 
prokMSA_id:65367 beta clone Orbal D16 AF450463
prokMSA_id:66610 Azoarcus sp. HxN1 
prokMSA_id:66959 Azoarcus sp. HA 
prokMSA_id:70860 Thauera aromatica AF170281
prokMSA_id:71611 Azoarcus sp. AY098637
prokMSA_id:73679 sp. sbr-gs29 AF281119
prokMSA_id:81509 clone SA90 
2.28.2.5.8.577 OTU 1 seq
prokMSA_id:6788 clone H12
2.28.2.5.8.578 OTU 1 seq
prokMSA_id:34522 clone CR98-5-13 
2.28.2.8 BORDETELLA_GROUP 247 seqs
2.28.2.8.1 LAU.MIRABILIS_SUBGROUP 10 seqs
2.28.2.8.1.579 OTU 10 seqs
prokMSA_id:7383 Ralstonia sp. str. MBIC3838
prokMSA_id:7396 Ralstonia basilensis str. RK1. AJ002302
prokMSA_id:21182 Ralstonia sp. HAB-02 
prokMSA_id:22497 Ralstonia sp. HAB-01 
prokMSA_id:31719 Ralstonia sp. HAB-11 
prokMSA_id:50666 Ralstonia basilensis 
prokMSA_id:64876 clone 3
prokMSA_id:67342 Ralstonia sp. BPC3 
prokMSA_id:86697 Ralstonia sp. 50 
prokMSA_id:88067 Ralstonia taiwanensis strain MS1 AY303977
2.28.2.8.4 BRD.BRONCHISEPTICA_SUBGROUP 237 seqs
2.28.2.8.4.580 OTU 16 seqs
prokMSA_id:26123 Arsenite-oxidizing 'Alcaligenes fecalis HLE' 
prokMSA_id:68619 clone KRA30+15 
prokMSA_id:68624 clone KRA30+06A 
prokMSA_id:77823 Alcaligenes xylosoxidans strain A1
prokMSA_id:77844 Alcaligenes xylosoxidans strain E
prokMSA_id:77845 Alcaligenes xylosoxidans strain F
prokMSA_id:78111 Alcaligenes xylosoxidans strain H
prokMSA_id:78128 Alcaligenes xylosoxidans strain A2
prokMSA_id:82582 Alcaligenes faecalis isolate 7634-A2
prokMSA_id:83269 Alcaligenes faecalis isolate 6818m-E
prokMSA_id:84201 Alcaligenes faecalis isolate 5659-H
prokMSA_id:85708 Alcaligenes faecalis isolate 7632-A1
prokMSA_id:86272 Alcaligenes sp. badwp AJ440003
prokMSA_id:90397 Alcaligenes sp. PCNB-2 AY283260
prokMSA_id:91456 clone LWSR-75 
prokMSA_id:94243 Alcaligenes xylosoxidans isolate mp5
2.28.2.8.4.581 OTU 22 seqs
prokMSA_id:5148 clone pCON7. U27853
prokMSA_id:6860 endosymbiont of Blastocrithidia culicis
prokMSA_id:6869 Alcaligenes sp. str. 151
prokMSA_id:6876 symbiont of Crithidia sp
prokMSA_id:6894 clone pM10
prokMSA_id:18037 Oligella urethralis 
prokMSA_id:24265 clone BIji21 AJ318149
prokMSA_id:30978 Arsenite-oxidizing NT-10 
prokMSA_id:43556 Achromobacter sp. clone:TSL-20 AB076884
prokMSA_id:46142 Achromobacter sp. clone:TSL-17
prokMSA_id:49531 Bordetella sp. 61717 
prokMSA_id:49793 Achromobacter ruhlandii 
prokMSA_id:55338 Achromobacter xylosoxidans 
prokMSA_id:64740 Achromobacter xylosoxidans subsp. denitrificans strain DSM 3
prokMSA_id:71865 Kinetoplastibacterium crithidii complete 
prokMSA_id:73213 Alcaligenes sp. CCCO7 AF511432
prokMSA_id:75663 clone:KCRS9 AB075065
prokMSA_id:77049 clone:KCRS14 AB075069
prokMSA_id:91543 Alcaligenes sp. mp-2 
prokMSA_id:92793 Alcaligenes sp. 92 
prokMSA_id:93327 Bordetella sp. 10d 
prokMSA_id:97708 Derxia gummosa complete strain:IAM14990
2.28.2.8.4.582 OTU 4 seqs
prokMSA_id:49039 Green Bay ferromanganous micronodule MND1 
prokMSA_id:85585 clone CCD10 AY221032
prokMSA_id:85647 clone CCU25 AY221081
prokMSA_id:93423 beta clone KCM-C-125
2.28.2.8.4.584 OTU 27 seqs
prokMSA_id:17963 maize root Zmrc113 
prokMSA_id:18554 clone RB7C3 
prokMSA_id:25816 Burkholderia sp. PJ604 
prokMSA_id:27004 clone RB7C10 
prokMSA_id:28612 clone RA7C9 
prokMSA_id:31185 beta GC24 
prokMSA_id:31266 clone RA7C16 
prokMSA_id:32687 beta SBR1001 
prokMSA_id:41082 Burkholderia sp. S4.9 
prokMSA_id:48813 beta SBR2080 
prokMSA_id:50006 Burkholderia sp. C4.7 
prokMSA_id:52024 Burkholderia sp. PJ310 
prokMSA_id:74760 WD206 clone WD206 AJ292638
prokMSA_id:76834 clone:KSR6
prokMSA_id:81261 clone ZZ9C4 
prokMSA_id:81481 Burkholderia sp. NK27 
prokMSA_id:81610 clone ZZ12AC4 
prokMSA_id:82057 clone ZZ14C6 
prokMSA_id:82241 clone ZZ14AC10 
prokMSA_id:88431 Alcaligenes sp. 2-6 
prokMSA_id:92133 Alcaligenes sp. IS-18 complete 
prokMSA_id:92941 Alcaligenes sp. IS-17 complete 
prokMSA_id:92976 Alcaligenes sp. IS-46 complete 
prokMSA_id:93023 Alcaligenes sp. IS-33 complete 
prokMSA_id:93083 Alcaligenes sp. IS-67 complete 
prokMSA_id:93592 Burkholderia sp. AK-5 
prokMSA_id:96460 Burkholderia sp. P312 AB114269
2.28.2.8.4.585 OTU 2 seqs
prokMSA_id:28965 Achromobacter xylosoxidans subsp. denitrificans 
prokMSA_id:68623 clone KRA30+05 
2.28.2.8.4.586 OTU 57 seqs
prokMSA_id:6725 Rhodocyclus sp. str. R6
prokMSA_id:6979 Rhodoferax fermentans str. FR3. D16212
prokMSA_id:6980 Rhodoferax fermentans str. FR2. D16211
prokMSA_id:6982 Rhodoferax antarcticus str. ANT.BR. AF084947
prokMSA_id:7022 Variovorax paradoxus IAM 12373 . D30793
prokMSA_id:7025 Variovorax paradoxus str. MBIC3839
prokMSA_id:7028 Variovorax paradoxus IAM 12373 . D88006
prokMSA_id:7029 Variovorax WFF52 str. WFF52
prokMSA_id:29134 Variovorax sp. HAB-24 AB051688
prokMSA_id:29704 WD240 clone WD240
prokMSA_id:31737 Variovorax sp. HAB-21 
prokMSA_id:35360 Variovorax paradoxus strain DSM 66 AJ420329
prokMSA_id:39868 clone RB7C2 
prokMSA_id:41243 Variovorax sp. HAB-27 
prokMSA_id:41872 PHOS-HC05 
prokMSA_id:42755 Variovorax sp. HAB-22 AB051686
prokMSA_id:43527 Variovorax sp. HAB-30 
prokMSA_id:44459 clone RB13C6 
prokMSA_id:45498 clone RB13C10 
prokMSA_id:46854 clone RB9C10 
prokMSA_id:49651 Variovorax sp. HAB-23 AB051687
prokMSA_id:50642 clone RB9C6 
prokMSA_id:54821 Variovorax sp. MN 36.2 isolate MN 36.2 AJ313017
prokMSA_id:55863 beta clone UCT NS03 
prokMSA_id:57761 Variovorax paradoxus strain Iso1 
prokMSA_id:58864 UNSW5 
prokMSA_id:58871 Beta '#33 spreading' 
prokMSA_id:59500 Pseudomonas sp. V-O7-10 
prokMSA_id:59518 Variovorax sp. A-A20-4 
prokMSA_id:61807 beta clone CLs95 AF529357
prokMSA_id:62991 Aquaspirillum sp. clone T8-7 rrn 
prokMSA_id:65488 beta clone UCT NS10 
prokMSA_id:65489 beta clone UCT NS08 
prokMSA_id:65490 beta clone UCT NS12 
prokMSA_id:65491 beta clone UCT NS01 
prokMSA_id:65493 beta clone UCT N161 AY064178
prokMSA_id:65496 beta clone UCT N112 AY064176
prokMSA_id:71064 Beta '#33 clear' AF423073
prokMSA_id:71666 clone RA13C5 AY050606
prokMSA_id:74317 Variovorax sp. A-A7-19 AF532137
prokMSA_id:74523 Variovorax sp. A-A20-5 AY136518
prokMSA_id:74636 WD2115 clone WD2115
prokMSA_id:78024 Variovorax sp. TUT1027 
prokMSA_id:79410 Variovorax sp. Pal2 
prokMSA_id:80145 clone SRE1 
prokMSA_id:81368 clone ZZ9C2 AY214173
prokMSA_id:81851 Variovorax paradoxus clone 1-95 
prokMSA_id:81879 clone ZZ9C12 
prokMSA_id:81934 clone ZZ9C11 
prokMSA_id:82365 clone ZZ9C20 
prokMSA_id:82413 clone ZZ12C5 
prokMSA_id:82437 Variovorax paradoxus clone 1-94 
prokMSA_id:86262 Variovorax sp. MN 45.2b.1 strain MN 45.2b.1
prokMSA_id:88200 Hydrogenophaga sp. clone D-17 AF523048
prokMSA_id:89209 Hydrogenophaga sp. clone D-13 
prokMSA_id:91307 Variovorax paradoxus 
prokMSA_id:91550 Variovorax sp. K6 
2.28.2.8.4.587 OTU 107 seqs
prokMSA_id:6721 Propionivibrio dicarboxylicus DSM 5885
prokMSA_id:6833 Alcaligenes sp. str. 05-36. X86580
prokMSA_id:6843 Bordetella parapertussis ATCC 15311 . U04949
prokMSA_id:6861 Bordetella avium ATCC 35086 . U04947
prokMSA_id:6872 Bordetella holmesii CDC F5101 complete U04820
prokMSA_id:6874 Bordetella bronchiseptica str. Dog 71 ATCC 19395 . U04948
prokMSA_id:6875 Bordetella pertussis ATCC 9797 . U04950
prokMSA_id:6877 Bordetella bronchiseptica str. S-1
prokMSA_id:6878 Alcaligenes sp. str. 159. AJ002804
prokMSA_id:6881 Alcaligenes sp. str. 05-51. X86584
prokMSA_id:6883 Alcaligenes sp. str. 30-68
prokMSA_id:6887 str. from Lake Gossenkoellesee
prokMSA_id:6891 Achromobacter xylosoxidans subsp. xylosoxidans IAM 12684. D8
prokMSA_id:6955 str. mz1L
prokMSA_id:6962 clone 19523. AF097797
prokMSA_id:7435 Ralstonia solanacearum str. Br150
prokMSA_id:7437 Ralstonia solanacearum str. R639
prokMSA_id:7438 Ralstonia solanacearum CIP 210
prokMSA_id:7439 Ralstonia solanacearum CIP 10
prokMSA_id:7442 Ralstonia solanacearum str. R633
prokMSA_id:7443 Ralstonia solanacearum str. R634
prokMSA_id:7444 Ralstonia solanacearum CIP 238
prokMSA_id:7445 Ralstonia solanacearum ACH 0158
prokMSA_id:7450 Ralstonia solanacearum str. R483
prokMSA_id:17784 FukuS68 
prokMSA_id:18218 Bordetella hinzii complete 
prokMSA_id:18270 Bordetella bronchiseptica strain DSM 10303 AJ278452
prokMSA_id:18382 Bordetella holmesii 
prokMSA_id:19435 FukuN65 
prokMSA_id:19997 clone CRP99-08 
prokMSA_id:20845 Achromobacter xylosoxidans subsp. xylosoxidans 
prokMSA_id:21204 Achromobacter xylosoxidans subsp. xylosoxidans strain A19 
prokMSA_id:21781 Bordetella petrii strain DSM 12804 AJ249861
prokMSA_id:22032 clone t018 AF422592
prokMSA_id:23589 beta clone Spb283 AJ422174
prokMSA_id:25458 Bordetella bronchiseptica 
prokMSA_id:25579 beta clone Spb111
prokMSA_id:26037 Bordetella avium complete 
prokMSA_id:28519 Achromobacter xylosoxidans subsp. xylosoxidans 
prokMSA_id:31379 of Bordetella bronchiseptica 
prokMSA_id:32410 Alcaligenes sp. STC1 
prokMSA_id:34250 clone CR98-35-39 
prokMSA_id:34633 beta clone Spb132
prokMSA_id:34637 clone t020 AF422594
prokMSA_id:35264 Achromobacter xylosoxidans strain AU0665 
prokMSA_id:37036 clone CR98-35-33 
prokMSA_id:37583 clone d156 AF422679
prokMSA_id:38093 clone CRP99-64 
prokMSA_id:38214 Bordetella trematum strain DSM 11334 AJ277798
prokMSA_id:39920 Bordetella holmesii strain B436 
prokMSA_id:40974 Blackwater bioreactor BW6 
prokMSA_id:42554 Achromobacter xylosoxidans strain AU1011 
prokMSA_id:42662 clone p-3415-SwA2 
prokMSA_id:43158 Beta A0823 
prokMSA_id:43210 Beta A0618 
prokMSA_id:43620 Bordetella parapertussis strain DSM 4922 AJ278450
prokMSA_id:48043 clone CR98-5-73 
prokMSA_id:48644 Bordetella holmesii isolate MDU9904076
prokMSA_id:49738 clone CR98-5-09 
prokMSA_id:49946 Bordetella parapertussis strain B24 
prokMSA_id:51665 Beta A0640 
prokMSA_id:60330 clone Phe2 
prokMSA_id:62502 Alcaligenaceae clone LA1-B29N 
prokMSA_id:66109 beta clone:KB17
prokMSA_id:67749 Ralstonia sp. AU2944 
prokMSA_id:68617 clone KRA30+16 
prokMSA_id:70363 Oligella urethralis strain LMG 1015 AJ251911
prokMSA_id:71908 FukuS75 AJ290016
prokMSA_id:73570 beta clone PRD01b010B AF289170
prokMSA_id:73994 clone KRA30-58 AY081994
prokMSA_id:77923 Beta CTE108 strain CTE108
prokMSA_id:78362 Achromobacter sp. LMG 6003 AY170847
prokMSA_id:78940 Alcaligenes sp. DW104 isolate DW104 AJ534850
prokMSA_id:80939 Achromobacter xylosoxidans 
prokMSA_id:80990 clone ARKMP-82 
prokMSA_id:81169 clone SD101 
prokMSA_id:81383 clone SC1 
prokMSA_id:81463 clone SA63 
prokMSA_id:81517 clone SA49 
prokMSA_id:81524 clone SC4 
prokMSA_id:81739 Denitrobacter sp. clone ckl31 
prokMSA_id:81741 beta clone ARKMP-94 
prokMSA_id:82031 clone SC40 
prokMSA_id:82314 clone SD19 
prokMSA_id:84642 Antarctic R-8875 strain R-8875
prokMSA_id:85429 beta clone TLM02/TLMdgge21 
prokMSA_id:88728 Beta pACH89 
prokMSA_id:89347 DSS20 
prokMSA_id:89651 DSSD90 
prokMSA_id:89748 beta clone HN4-32 
prokMSA_id:90051 DSSD49 AY328747
prokMSA_id:90347 Beta KNU3 
prokMSA_id:90733 DSSD46 
prokMSA_id:90769 soil clone HS9-74 
prokMSA_id:91145 clone T7-2-1A03 AY345561
prokMSA_id:91165 Bordetella parapertussis strain 12822 complete genome; segme
prokMSA_id:91428 clone K2-30-11 AY344371
prokMSA_id:91609 Bordetella parapertussis strain 12822 complete genome; segme
prokMSA_id:91793 Bordetella pertussis strain Tohama I complete genome; segmen
prokMSA_id:91811 clone W1B-B04 
prokMSA_id:91830 Bordetella parapertussis strain 12822 complete genome; segme
prokMSA_id:91984 Bordetella bronchiseptica strain RB50 complete genome; segme
prokMSA_id:93094 Bordetella bronchiseptica strain RB50 complete genome; segme
prokMSA_id:94336 beta- clone S15D-MN99 AJ583177
prokMSA_id:95147 beta- clone S15D-MN15
prokMSA_id:95601 Ralstonia solanacearum isolate EGY-MS2003 23S ; tRNA-Ala and
prokMSA_id:97646 clone B488 
2.28.2.8.4.588 OTU 1 seq
prokMSA_id:95883 beta clone NE78
2.28.2.8.4.589 OTU 1 seq
prokMSA_id:22985 Brackiella oedipodis strain LMG 19451 R8846
2.28.2.9 ACIDOVORAX_GROUP 214 seqs
2.28.2.9.4 ACIDOVORAX_SUBGROUP 212 seqs
2.28.2.9.4.1 COM.TERRIGENA_SUBGROUP 100 seqs
2.28.2.9.4.1.590 OTU 1 seq
prokMSA_id:6938 Brachymonas denitrificans str. AS-P1 JCM 9216
2.28.2.9.4.1.591 OTU 97 seqs
prokMSA_id:6696 Dechlorimonas agitatus str. CKB
prokMSA_id:6698 clone T16
prokMSA_id:6700 Dechlorimonas CL str. CL
prokMSA_id:6701 Dechlorimonas NM str. NM
prokMSA_id:6703 Dechlorimonas MissR str. MissR
prokMSA_id:6717 Propionibacter pelophilus str. asp 66
prokMSA_id:6901 Delftia acidovorans str. Stanier 14 ACM 489
prokMSA_id:6902 Comamonas sp. str. 158. AJ002803
prokMSA_id:6903 Delftia DEEP-3
prokMSA_id:6905 Comamonas MC1 str. MC1
prokMSA_id:6908 Delftia acidovorans str. MBIC1305 IFO 13582
prokMSA_id:6909 str. BD5-11. AB015567
prokMSA_id:6914 str. rM2
prokMSA_id:6915 str. rM3
prokMSA_id:6917 str. rM7
prokMSA_id:6918 str. rM11
prokMSA_id:6919 str. rM13
prokMSA_id:6920 str. rA1
prokMSA_id:6921 str. rA3
prokMSA_id:6924 Comamonas D22 str. D22. AF188304
prokMSA_id:6925 Comamonas 12022 str. 12022
prokMSA_id:6927 Comamonas testosteroni str. MBIC3841
prokMSA_id:6930 str. rM10
prokMSA_id:6931 str. rM12
prokMSA_id:6932 str. rA6
prokMSA_id:6933 str. rA7
prokMSA_id:6934 str. rA8
prokMSA_id:6935 str. rA11
prokMSA_id:7060 str. rJ12
prokMSA_id:7089 Comamonas sp. str. R7. AJ002810
prokMSA_id:17736 Comamonas sp. PJ111 
prokMSA_id:18248 Comamonas denitrificans strain 110 
prokMSA_id:20196 beta clone:OS1L-11
prokMSA_id:22960 beta clone:OS1L-10
prokMSA_id:23191 Comamonas denitrificans strain 123 
prokMSA_id:23431 Comamonas testosteroni 
prokMSA_id:25748 Comamonas sp. BL217-3 
prokMSA_id:26640 Delftia sp. T7 
prokMSA_id:26694 Thiobacillus Q strain LMD 81.11 AJ289884
prokMSA_id:29346 clone CR99-2-25 
prokMSA_id:29690 Comamonas sp. clone KL-27-1-15 
prokMSA_id:30714 Comamonas sp. PJ712 
prokMSA_id:30998 clone d122 AF422671
prokMSA_id:32915 Comamonas testosteroni strain SMCC B329 
prokMSA_id:34132 Dechloromonas sp. FL8 
prokMSA_id:35749 beta clone:OS1L-16
prokMSA_id:35840 clone HTBB6 
prokMSA_id:36553 clone CR98-24-11 
prokMSA_id:36587 and method detecting Ps. Alcaligenes KB2 strain by using in 
prokMSA_id:36914 Comamonas sp. clone KL-11-1-9 
prokMSA_id:37071 Delftia sp. AN3 
prokMSA_id:37533 clone CR98-5-04 
prokMSA_id:38824 Comamonas sp. strain 23310
prokMSA_id:39244 Beta K601 strain K601
prokMSA_id:40166 Comamonas denitrificans strain 2.99g 
prokMSA_id:42211 beta clone:OS1L-7
prokMSA_id:43605 Delftia sp. EK3 isolate EK3
prokMSA_id:46798 clone CR98-5-11 
prokMSA_id:47427 clone PDS5 
prokMSA_id:49487 SA17 
prokMSA_id:50481 beta SBRH147 
prokMSA_id:50714 Dechloromonas sp. FL2 
prokMSA_id:52739 Delftia acidovorans AF106609
prokMSA_id:55628 clone:R6-01 AB087519
prokMSA_id:58604 Comamonas sp. SFCD1 
prokMSA_id:59344 clone HP1B35 
prokMSA_id:59908 beta clone ccslm224 
prokMSA_id:61806 Beta AC1 
prokMSA_id:61813 beta clone CLs74 
prokMSA_id:62388 beta clone FTLpost11 
prokMSA_id:62959 clone LPU25 
prokMSA_id:62968 clone LPB10 AF527581
prokMSA_id:64241 Comamonas testosteroni isolate Q10 
prokMSA_id:66230 Acidovorax avenae isolate C1 
prokMSA_id:66754 Comamonas sp. SMCC B0630 
prokMSA_id:66952 Acidovorax sp. C1 strain C1
prokMSA_id:68621 clone KRA30+12 
prokMSA_id:68710 clone p29 
prokMSA_id:69635 Comamonas sp. AV1A 
prokMSA_id:70139 Comamonadaceae PIV-3D strain PIV-3D AJ505855
prokMSA_id:72360 Delftia acidovorans WDL34 AF538930
prokMSA_id:72520 Comamonas cf. acidovorans AF181575
prokMSA_id:73055 Comamonas denitrificans strain P17 AF233880
prokMSA_id:74685 Acidovorax wohlfahrtii strain B2/74
prokMSA_id:74723 Comamonas denitrificans strain 5.38g AF233879
prokMSA_id:76524 beta clone S15A-MN36
prokMSA_id:78738 Acidovorax sp
prokMSA_id:84191 Comamonas testosteroni 
prokMSA_id:84317 Antarctic R-9284 strain R-9284
prokMSA_id:84537 Comamonas testosteroni strain NCIMB 10643 
prokMSA_id:84751 Comamonas testosteroni 
prokMSA_id:85602 Acidovorax sp. 98-63833 
prokMSA_id:87769 Comamonas testosteroni strain CNB1 
prokMSA_id:88347 Delftia acidovorans strain R4 
prokMSA_id:91025 clone SR_FBR_L14 AY340837
prokMSA_id:91909 Comamonas testosteroni 
prokMSA_id:94145 Core-1 
2.28.2.9.4.1.592 OTU 1 seq
prokMSA_id:81309 clone SD79 
2.28.2.9.4.1.593 OTU 1 seq
prokMSA_id:82229 clone SB102 
2.28.2.9.4.3 HGP.PALLERONII_SUBGROUP 84 seqs
2.28.2.9.4.3.594 OTU 3 seqs
prokMSA_id:26505 clone CRD99-67 
prokMSA_id:40659 clone CRD99-63 
prokMSA_id:77847 Pseudomonas spinosa 
2.28.2.9.4.3.595 OTU 81 seqs
prokMSA_id:6941 Hydrogenophaga flava CCUG 1658
prokMSA_id:6942 Hydrogenophaga flava DSM 619. AB021420
prokMSA_id:6943 Hydrogenophaga pseudoflava str. GA3 ATCC 33668
prokMSA_id:6945 clone SJA-155
prokMSA_id:6946 Hydrogenophaga taeniospiralis ATCC 49743
prokMSA_id:6948 Hydrogenophaga palleronii str. Stanier 362t1 CCUG 20334
prokMSA_id:6949 Hydrogenophaga palleronii str. S1 DSM 63 . AF019073
prokMSA_id:16847 clone CR99-2-20 
prokMSA_id:18413 beta clone SM1E11 
prokMSA_id:21592 mle1-6 
prokMSA_id:21895 Arsenite-oxidizing NT-14 AY027497
prokMSA_id:22849 clone CR98-5-22 
prokMSA_id:23702 clone CR99-7-52 
prokMSA_id:23799 clone CRD99-68 
prokMSA_id:25322 clone CRD99-07 
prokMSA_id:27655 clone CR99-7-20 
prokMSA_id:28130 clone CR98-5-29 
prokMSA_id:29064 clone CR99-24-67 
prokMSA_id:29796 clone CR99-2-09 
prokMSA_id:30074 clone CR99-7-74 
prokMSA_id:30372 clone CRD99-28 
prokMSA_id:30654 Hydrogenophaga flava strain DSM 619 AJ420328
prokMSA_id:31972 clone CR99-24-24 
prokMSA_id:32768 clone CR99-35-39 
prokMSA_id:35828 clone CRD99-66 
prokMSA_id:36017 clone CR98-5-46 
prokMSA_id:36603 beta clone Spb54
prokMSA_id:37646 clone CR98-5-74 
prokMSA_id:39531 clone CRD99-38 
prokMSA_id:40028 Arsenite-oxidizing NT-6 
prokMSA_id:41692 beta clone SM1E01 
prokMSA_id:42753 Arsenite-oxidizing NT-5 
prokMSA_id:43585 clone CR99-7-24 
prokMSA_id:44175 clone CR99-7-07 
prokMSA_id:44788 clone CR99-24-32 
prokMSA_id:44893 Beta NOS8 
prokMSA_id:45634 beta clone Spb266 AJ422171
prokMSA_id:47512 Hydrogenophaga pseudoflava strain DSM 1034 AJ420327
prokMSA_id:49168 clone t003 AF422578
prokMSA_id:49718 clone CR98-5-27 
prokMSA_id:51402 clone CRD99-21 
prokMSA_id:51945 beta clone Spb223 AJ422167
prokMSA_id:59911 beta clone ccslm2112 
prokMSA_id:61826 beta clone CLi60 AF529338
prokMSA_id:66294 Hydrogenophaga sp. LCSAOTU22 
prokMSA_id:66574 Sphaerotilus natans 
prokMSA_id:69400 Comamonadaceae BP-1b 
prokMSA_id:69896 clone 29522 AF097778
prokMSA_id:78049 Macromonas bipunctata 
prokMSA_id:80589 clone KD1-23 
prokMSA_id:81212 clone SB121 
prokMSA_id:81545 clone KD2-15 
prokMSA_id:81945 clone SA15 
prokMSA_id:81976 clone SC106 
prokMSA_id:82194 clone KD1-134 
prokMSA_id:82258 clone SD85 
prokMSA_id:82293 clone SA4 
prokMSA_id:82415 clone SD32 
prokMSA_id:82776 Antarctic R-8890 strain R-8890
prokMSA_id:88128 Hydrogenophaga sp. clone D-20 AF523050
prokMSA_id:88381 Hydrogenophaga sp. clone D-10 
prokMSA_id:88425 Hydrogenophaga sp. clone B-3 AF523000
prokMSA_id:88540 Hydrogenophaga sp. clone C-3 
prokMSA_id:88751 Hydrogenophaga sp. clone D-18 AF523069
prokMSA_id:88794 Hydrogenophaga sp. clone H-9 
prokMSA_id:88878 Hydrogenophaga sp. clone B-20 AF523021
prokMSA_id:88908 Hydrogenophaga sp. clone G-1 
prokMSA_id:89124 Hydrogenophaga sp. clone B-22 AF523001
prokMSA_id:89755 Hydrogenophaga sp. clone C-16 
prokMSA_id:90052 Hydrogenophaga sp. clone H-3 AF523030
prokMSA_id:90139 Hydrogenophaga sp. clone B-11 AF523054
prokMSA_id:90185 Hydrogenophaga sp. clone B-19 
prokMSA_id:90602 Hydrogenophaga sp. clone B-6 AF523037
prokMSA_id:90619 Hydrogenophaga sp. clone D-9 
prokMSA_id:90641 Hydrogenophaga sp. clone C-5 
prokMSA_id:90702 Hydrogenophaga sp. clone B-9 AF523011
prokMSA_id:93226 beta- clone Gitt-GS-139
prokMSA_id:93967 beta- clone Gitt-GS-145
prokMSA_id:94637 
prokMSA_id:95631 Hydrogenophaga defluvii strain BSB 9.5T
prokMSA_id:97176 Hydrogenophaga atypica strain BSB 41.8T
2.28.2.9.4.8 RHF.FERMENTANS_SUBGROUP 23 seqs
2.28.2.9.4.8.596 OTU 23 seqs
prokMSA_id:6535 Nitrosovibrio TYM9 str. TYM9
prokMSA_id:6601 Nitrosospira multiformis. NONE
prokMSA_id:19086 Nitrosospira sp. PJA1 AF353163
prokMSA_id:20624 Nitrosospira sp. TCH716 
prokMSA_id:22689 Nitrosospira sp. GS833 
prokMSA_id:44054 Nitrosovibrio sp. E12 
prokMSA_id:52631 Nitrosospira sp. BF16c46 
prokMSA_id:69130 Nitrosospira sp. Nsp62 
prokMSA_id:69429 Nitrosospira sp. Nsp1 
prokMSA_id:69463 Nitrosovibrio tenuis 
prokMSA_id:70700 Nitrosospira briensis 
prokMSA_id:70906 Nitrosospira multiformis 
prokMSA_id:71885 Nitrosospira sp. Nsp40 
prokMSA_id:72266 Nitrosospira sp. Nsp17 
prokMSA_id:73045 Nitrosospira sp. Nv6 
prokMSA_id:73871 Nitrosospira sp. Nsp2 
prokMSA_id:73957 Nitrosospira sp. Nsp41 
prokMSA_id:73969 Nitrosospira sp. Nsp65 
prokMSA_id:81566 clone KD1-35 
prokMSA_id:81823 clone KD5-114 
prokMSA_id:81902 clone KD4-7 
prokMSA_id:82230 clone KD5-124 
prokMSA_id:82442 clone KD3-39 
2.28.2.9.4.10 VRV.PARADOXUS_SUBGROUP 1 seq
2.28.2.9.4.10.597 OTU 1 seq
prokMSA_id:41200 Beta A0837 
2.28.2.9.4.13 AV.AVENAE_SUBGROUP 4 seqs
2.28.2.9.4.13.598 OTU 1 seq
prokMSA_id:7067 Acidovorax avenae subsp. avenae ATCC 19860
2.28.2.9.4.13.599 OTU 1 seq
prokMSA_id:7061 str. rM4
2.28.2.9.4.13.600 OTU 1 seq
prokMSA_id:97627 Acidovorax sp. AHL 5 
2.28.2.9.4.13.601 OTU 1 seq
prokMSA_id:16529 clone GOUTB6 
2.28.2.9.5 LEPTOTHRIX_SUBGROUP 2 seqs
2.28.2.9.5.1 RUB.GELATINOSUS_SUBGROUP 2 seqs
2.28.2.9.5.1.602 OTU 2 seqs
prokMSA_id:82025 clone SD114 
prokMSA_id:82456 Ralstonia sp. Q3-8/14 
2.28.2.10 BURKHOLDERIA_GROUP 259 seqs
2.28.2.10.2 MEALYBUG_SYMBIONTS 7 seqs
2.28.2.10.2.603 OTU 4 seqs
prokMSA_id:7188 endosymbiont of mealybug Pseudococcus maritimus
prokMSA_id:55005 Planococcus citri beta- endosymbiont 
prokMSA_id:63949 Candidatus Tremblaya princeps from Planococcus ficus and 23S
prokMSA_id:63951 Candidatus Tremblaya princeps from Planococcus citri and 23S
2.28.2.10.2.604 OTU 3 seqs
prokMSA_id:63946 Candidatus Tremblaya princeps from Vryburgia brevicruris and
prokMSA_id:63947 Candidatus Tremblaya princeps from Vryburgia amaryllidis and
prokMSA_id:63959 Candidatus Tremblaya princeps from Erium globosum and 23S ge
2.28.2.10.6 BUR.CEPACIA_SUBGROUP 252 seqs
2.28.2.10.6.605 OTU 252 seqs
prokMSA_id:7192 Burkholderia sp. U37344
prokMSA_id:7198 Burkholderia sp. str. DhA-54. AJ011508
prokMSA_id:7200 Burkholderia LB400 str. LB400
prokMSA_id:7201 Burkholderia sp. U37343
prokMSA_id:7202 Burkholderia sp
prokMSA_id:7207 Burkholderia graminis str. C4D1M ATCC 700544
prokMSA_id:7208 Burkholderia graminis str. C3A1M. U96940
prokMSA_id:7209 Burkholderia graminis str. AUS35
prokMSA_id:7213 Burkholderia EN-B3
prokMSA_id:7214 Burkholderia EN-B9. AF074712
prokMSA_id:7221 Burkholderia phenazinium str. 1A LMG 2247
prokMSA_id:7226 Burkholderia caryophylli ATCC 25418
prokMSA_id:7227 Burkholderia glathei str. N 15 LMG 14190
prokMSA_id:7229 Burkholderia glathei str. N 15 ATCC 29195 . AB021374
prokMSA_id:7230 Burkholderia NF100
prokMSA_id:7233 Burkholderia pseudomallei ATCC 23343
prokMSA_id:7236 Burkholderia mallei str. China 7 ATCC 23344
prokMSA_id:7237 Burkholderia thailandensis str. E264 ATCC 700388
prokMSA_id:7238 Burkholderia pseudomallei
prokMSA_id:7239 Burkholderia pseudomallei str. 1026b
prokMSA_id:7240 Burkholderia mallei str. GB6
prokMSA_id:7241 Burkholderia mallei str. GB8
prokMSA_id:7243 Burkholderia cepacia str. Ballard 717; Starr PC 25 ATCC 2541
prokMSA_id:7244 Burkholderia gladioli EY 3258
prokMSA_id:7246 Burkholderia plantarii LMG 16020
prokMSA_id:7247 Burkholderia sp
prokMSA_id:7248 Burkholderia multivorans LMG 13010
prokMSA_id:7250 Burkholderia cepacia str. Ballard 717; Starr PC 25 ATCC 2541
prokMSA_id:7251 Burkholderia multivorans LMG 14293
prokMSA_id:7252 Burkholderia cepacia LMG 12614t2
prokMSA_id:7253 Burkholderia cepacia LMG 14294
prokMSA_id:7254 Burkholderia vietnamiensis str. TVV75 LMG 10929
prokMSA_id:7255 Burkholderia cepacia str. KP24. AB015606
prokMSA_id:7256 Burkholderia cepacia
prokMSA_id:7258 Burkholderia sp. str. MBIC3837
prokMSA_id:7261 Burkholderia vietnamiensis str. TVV75
prokMSA_id:7264 Burkholderia glumae LMG 2196 . U96931
prokMSA_id:7265 Burkholderia gladioli LMG 11626 . U96934
prokMSA_id:7266 Burkholderia vietnamiensis str. TVV70
prokMSA_id:7268 Pseudomonas antimicrobica NCIMB 9898. AB021384
prokMSA_id:7269 Burkholderia gladioli subsp. gladioli str. NIAS 1065. AB0244
prokMSA_id:7272 Burkholderia plantarii str. AZ 8201 LMG 9035
prokMSA_id:7273 Burkholderia pyrrocinia str. 2327 LMG 14191
prokMSA_id:7274 Burkholderia pyrrocinia str. 2327 ATCC 15958 . AB021369
prokMSA_id:7275 Burkholderia m35b str. m35b
prokMSA_id:7276 Burkholderia C3B1M str. C3B1M
prokMSA_id:7279 Burkholderia cepacia str. Ballard 717; Starr PC 25 ATCC 2541
prokMSA_id:16066 Ruminococcus flavefaciens str. AR72
prokMSA_id:16318 Burkholderia pseudomallei isolate K96243 
prokMSA_id:17136 Burkholderia pseudomallei isolate L2 
prokMSA_id:17335 Burkholderia cocovenenans strain ATCC 33664T AB021389
prokMSA_id:17921 WD266 clone WD266
prokMSA_id:19103 Diazotroph str. BA126 
prokMSA_id:19267 Beta A30-1 
prokMSA_id:19296 Burkholderia cepacia genomovar III 
prokMSA_id:19447 Burkholderia ambifaria 
prokMSA_id:19558 WD285 clone WD285
prokMSA_id:20881 WD2116 clone WD2116
prokMSA_id:20984 Burkholderia sp. A6.33GD 
prokMSA_id:21144 WD289 clone WD289
prokMSA_id:21478 Burkholderia pseudomallei isolate H2 
prokMSA_id:21561 Burkholderia cepacia isolate LS2.4 AF311971
prokMSA_id:22064 WD263 clone WD263
prokMSA_id:22281 Burkholderia sp. S4.13 
prokMSA_id:23000 Burkholderia mallei ATCC 23344 Genomic 378 nt segment 2 of 2
prokMSA_id:23866 WD227 clone WD227
prokMSA_id:24062 Burkholderia pseudomallei Ara+ biotype isolate S94019 
prokMSA_id:24899 Burkholderia sp. NAP1 
prokMSA_id:26306 WD202 clone WD202
prokMSA_id:26793 Limnobacter thiooxidans strain CS-K2
prokMSA_id:26845 Burkholderia sp. SM7.5.min46GD 
prokMSA_id:27685 Burkholderia sp. CAB-02 
prokMSA_id:27908 Burkholderia sp. casida 
prokMSA_id:28307 Burkholderia sp. LMG 16225 
prokMSA_id:31797 Burkholderia sp. JR7B3 
prokMSA_id:32496 Burkholderia cepacia 
prokMSA_id:32920 Burkholderia gladioli Genomic 1343 nt 2 segments
prokMSA_id:32997 Burkholderia mallei ATCC 23344 Genomic 1340 nt 2 segments
prokMSA_id:34465 Burkholderia gladioli complete 
prokMSA_id:34839 Burkholderia cepacia isolate LMG 12614 
prokMSA_id:35609 Burkholderia sp. AB2 
prokMSA_id:36691 Burkholderia pseudomallei isolate V685 
prokMSA_id:37179 WD258 clone WD258
prokMSA_id:37270 Burkholderia pseudomallei isolate V824 
prokMSA_id:38074 WD2109 clone WD2109
prokMSA_id:38190 WD2106 clone WD2106
prokMSA_id:39013 Burkholderia pseudomallei isolate V688 
prokMSA_id:39600 Burkholderia sp. C2.1 AF247488
prokMSA_id:39961 Burkholderia sp. STM678 strain STM678
prokMSA_id:40058 Burkholderia sp. HY1 complete 
prokMSA_id:40802 Burkholderia cepacia 
prokMSA_id:45950 Burkholderia cepacia isolate WS11.7 
prokMSA_id:46233 Burkholderia sp. AB101 
prokMSA_id:46605 Burkholderia pseudomallei isolate V684 
prokMSA_id:47500 Burkholderia gladioli Genomic 378 nt segment 2 of 2
prokMSA_id:48688 Burkholderia cepacia 
prokMSA_id:48735 Burkholderia pseudomallei isolate H1 
prokMSA_id:49249 Burkholderia sp. EJP77 isolate EJP77
prokMSA_id:51110 WD2114 clone WD2114
prokMSA_id:51147 Beta A40-2 
prokMSA_id:51508 Burkholderia cepacia 
prokMSA_id:52290 WD268 clone WD268
prokMSA_id:52375 Burkholderia pseudomallei isolate V830 
prokMSA_id:52847 Burkholderia anthina strain R-4183
prokMSA_id:53380 Burkholderia sp. S2.1 
prokMSA_id:53786 Burkholderia sp. LMG 16307 
prokMSA_id:56209 Burkholderia sp. BPC2 
prokMSA_id:56354 clone cvf56041 
prokMSA_id:58605 Burkholderia sp. ICD 
prokMSA_id:59707 Burkholderia cepacia complete 
prokMSA_id:62903 Pseudomonas 
prokMSA_id:66043 Burkholderia sordicola strain SNU 020123 
prokMSA_id:66044 Burkholderia sordicola strain S5-B 
prokMSA_id:66264 Burkholderia sp. TNFYE-5 
prokMSA_id:66295 Burkholderia sp. LCSAOTU14 
prokMSA_id:68457 Symbiont cf. Burkholderia of Acromyrmex octospinosus AF45979
prokMSA_id:69393 Burkholderia sp. LMG 20580 
prokMSA_id:71097 Burkholderia stabilis AF148554
prokMSA_id:71813 Burkholderia terricola 
prokMSA_id:71936 Burkholderia hospita AY040365
prokMSA_id:72564 Burkholderia hospita AY040353
prokMSA_id:73256 Burkholderia sp. LMG 21262 
prokMSA_id:75150 Burkholderia phenazinium isolate Hg 16 
prokMSA_id:75173 Burkholderia glathei isolate Hg 4 
prokMSA_id:75249 Burkholderia glathei isolate Hg 3 
prokMSA_id:75333 Candidatus Burkholderia kirkii strain 19536779 complete 
prokMSA_id:75371 Burkholderia glathei isolate Hg 7 
prokMSA_id:75398 Candidatus Burkholderia kirkii strain 835396 complete 
prokMSA_id:75813 Burkholderia glathei isolate Hg 17 
prokMSA_id:75857 Burkholderia glathei isolate Hg 11 
prokMSA_id:75878 Burkholderia phenazinium isolate Hg 10 
prokMSA_id:75885 Candidatus Burkholderia kirkii strain 835462 complete 
prokMSA_id:76358 Candidatus Burkholderia kirkii strain 835430 complete 
prokMSA_id:76415 Burkholderia glathei isolate Hg 18 
prokMSA_id:76440 Candidatus Burkholderia kirkii strain 835429 complete 
prokMSA_id:76456 Burkholderia phenazinium isolate Hg 14 
prokMSA_id:76534 Burkholderia glathei isolate Hg 19 
prokMSA_id:76693 Candidatus Burkholderia kirkii strain 19981825 complete 
prokMSA_id:76898 Burkholderia phenazinium isolate Hg 8 
prokMSA_id:77065 Burkholderia glathei isolate Hg 5 
prokMSA_id:77259 Burkholderia glathei isolate Hg 2 
prokMSA_id:77747 Burkholderia pyrrocinia strain R1904
prokMSA_id:78142 Burkholderia pyrrocinia strain R13058
prokMSA_id:78347 Burkholderia pyrrocinia strain R11805
prokMSA_id:78791 Burkholderia sp. 56 
prokMSA_id:80321 Burkholderia fungorum strain W566
prokMSA_id:80730 Burkholderia anthina strain BHS1
prokMSA_id:80829 Burkholderia fungorum strain Sw120
prokMSA_id:81718 Burkholderia cepacia strain B9 
prokMSA_id:82944 Burkholderia sp. MN 101.b strain MN 101.b
prokMSA_id:84021 Beta W-2025 parital 
prokMSA_id:84996 Burkholderia multivorans 
prokMSA_id:85767 Beta W-2028 parital 
prokMSA_id:87062 Burkholderia cepacia 
prokMSA_id:88290 Burkholderia thailandensis strain 2002721627 
prokMSA_id:88936 Burkholderia thailandensis strain 2002721643 
prokMSA_id:89016 Limnobacter sp. clone I-1 
prokMSA_id:89744 Burkholderia pyrrocinia HI2715 
prokMSA_id:90492 Limnobacter sp. clone D-15 AF522999
prokMSA_id:90537 Burkholderia sp. LUP 
prokMSA_id:90782 Burkholderia sp. CEB01056 strain CEB01056
prokMSA_id:91006 Burkholderia mallei strain 2002721278 complete 
prokMSA_id:91038 Burkholderia pseudomallei strain 2002721108 complete AY30576
prokMSA_id:91039 Burkholderia gladioli strain 1993027208 
prokMSA_id:91046 Burkholderia pseudomallei strain 2002721145 complete AY30578
prokMSA_id:91062 Burkholderia pseudomallei strain 2002721619 complete AY30581
prokMSA_id:91069 Burkholderia pseudomallei strain 2002721626 complete AY30580
prokMSA_id:91086 Burkholderia pseudomallei strain 2002721102 complete 
prokMSA_id:91091 Burkholderia pseudomallei strain 2002721639 complete 
prokMSA_id:91110 Burkholderia pseudomallei strain 2002721115 complete 
prokMSA_id:91166 Burkholderia mallei strain 2000031304 complete 
prokMSA_id:91193 Burkholderia mallei strain 2002721280 complete 
prokMSA_id:91227 Burkholderia pseudomallei strain 2002721103 complete 
prokMSA_id:91232 Burkholderia pseudomallei strain 2002721624 complete 
prokMSA_id:91250 Burkholderia pseudomallei strain 2002721625 complete 
prokMSA_id:91261 Burkholderia mallei strain 2002721277 complete 
prokMSA_id:91269 Burkholderia pseudomallei strain 2003000540 complete 
prokMSA_id:91273 Burkholderia pseudomallei strain 2002721162 complete 
prokMSA_id:91277 Burkholderia pseudomallei strain 2002721623 complete 
prokMSA_id:91278 Burkholderia mallei strain 2002721648 complete 
prokMSA_id:91282 Burkholderia mallei strain 2000031063 complete 
prokMSA_id:91283 Burkholderia mallei strain 2002734306 complete 
prokMSA_id:91294 Burkholderia pseudomallei strain 2002721618 complete AY30581
prokMSA_id:91300 Burkholderia mallei strain 2002734300 complete 
prokMSA_id:91302 Burkholderia pseudomallei strain 2002721209 complete 
prokMSA_id:91346 Burkholderia pseudomallei strain 2002721181 complete 
prokMSA_id:91360 Burkholderia pseudomallei strain 2002721630 complete 
prokMSA_id:91377 Burkholderia pseudomallei strain 2002721638 complete 
prokMSA_id:91383 Burkholderia pseudomallei strain 2001029240 complete 
prokMSA_id:91403 Burkholderia pseudomallei strain 2002721116 complete AY30578
prokMSA_id:91437 Burkholderia pseudomallei strain 2002721628 complete 
prokMSA_id:91441 Burkholderia pseudomallei strain 2002721161 complete 
prokMSA_id:91463 Burkholderia pseudomallei strain 2002721622 complete 
prokMSA_id:91464 Burkholderia mallei strain 2002734304 complete 
prokMSA_id:91465 Burkholderia mallei strain 2002721279 complete 
prokMSA_id:91469 Burkholderia pseudomallei strain 2002721629 complete 
prokMSA_id:91472 Burkholderia mallei strain 2002721273 complete 
prokMSA_id:91485 Burkholderia pseudomallei strain 2002721146 complete 
prokMSA_id:91496 Burkholderia pseudomallei strain 2002721641 complete AY30579
prokMSA_id:91500 Burkholderia pseudomallei strain 2002721637 complete 
prokMSA_id:91508 Burkholderia pseudomallei strain 2000032024 complete 
prokMSA_id:91527 Burkholderia pseudomallei strain 2002721096 complete 
prokMSA_id:91539 Burkholderia pseudomallei strain 2000032028 complete 
prokMSA_id:91555 Burkholderia mallei strain 2002734303 complete AY305742
prokMSA_id:91563 Burkholderia pseudomallei strain 2002721090 complete 
prokMSA_id:91568 Burkholderia mallei strain 2002721274 complete 
prokMSA_id:91586 Burkholderia pseudomallei strain 2002721124 complete 
prokMSA_id:91595 Burkholderia gladioli strain 2002721590 
prokMSA_id:91599 Burkholderia pseudomallei strain 2002721636 complete AY30579
prokMSA_id:91617 Burkholderia pseudomallei strain 2002721620 complete AY30581
prokMSA_id:91650 Burkholderia mallei strain 2002734305 complete 
prokMSA_id:91664 Burkholderia mallei strain 2002734301 complete 
prokMSA_id:91682 Burkholderia pseudomallei strain 2002721646 complete AY30578
prokMSA_id:91689 Burkholderia pseudomallei strain 2002721114 complete 
prokMSA_id:91723 Burkholderia pseudomallei strain 2002721647 complete AY30577
prokMSA_id:91734 Burkholderia pseudomallei strain 2000032029 complete 
prokMSA_id:91737 Burkholderia pseudomallei strain 2000032027 complete AY30576
prokMSA_id:91752 Burkholderia mallei strain 2002721275 complete 
prokMSA_id:91771 Burkholderia mallei strain 2000031064 complete 
prokMSA_id:91773 Burkholderia pseudomallei strain 2002721177 complete 
prokMSA_id:91805 Burkholderia pseudomallei strain 2002721640 complete 
prokMSA_id:91808 Burkholderia pseudomallei strain 2002721634 complete 
prokMSA_id:91810 Burkholderia pseudomallei strain 2000032025 complete 
prokMSA_id:91819 Burkholderia pseudomallei strain 2002721617 complete 
prokMSA_id:91825 Burkholderia pseudomallei strain 2002721184 complete 
prokMSA_id:91826 Burkholderia mallei strain 2002734307 complete 
prokMSA_id:91833 Burkholderia pseudomallei strain K96243 complete 
prokMSA_id:91848 Burkholderia pseudomallei strain 2000032026 complete 
prokMSA_id:91857 Burkholderia mallei strain 2002721276 complete 
prokMSA_id:91861 Burkholderia pseudomallei strain 2002721635 complete 
prokMSA_id:91864 Burkholderia pseudomallei strain 2002721633 complete 
prokMSA_id:91867 Burkholderia pseudomallei strain 2002721123 complete 
prokMSA_id:91885 Burkholderia mallei strain 2002734299 complete 
prokMSA_id:91891 Burkholderia pseudomallei strain 2002721186 complete 
prokMSA_id:91902 Burkholderia pseudomallei strain 2002721642 complete AY30578
prokMSA_id:91916 Burkholderia gladioli strain 1995009253 AY268165
prokMSA_id:91920 Burkholderia pseudomallei strain 2002721166 complete AY30576
prokMSA_id:91924 Burkholderia gladioli strain 1996012911 
prokMSA_id:91925 Burkholderia mallei strain 2000031065 complete 
prokMSA_id:91928 Burkholderia pseudomallei strain 2002721631 complete AY30580
prokMSA_id:91970 Burkholderia mallei strain 2000031066 complete 
prokMSA_id:91988 Burkholderia mallei strain 2002734302 complete 
prokMSA_id:91991 Burkholderia gladioli strain 2002721589 AY268164
prokMSA_id:91996 Burkholderia pseudomallei strain 2002721171 complete 
prokMSA_id:92011 Burkholderia pseudomallei strain 2002721632 complete AY30580
prokMSA_id:92151 Burkholderia sp. 45250588-5 AY353696
prokMSA_id:92526 Burkholderia sp. 13 
prokMSA_id:92786 Burkholderia sp. 14 
prokMSA_id:92789 Burkholderia sp. 54 
prokMSA_id:93571 Burkholderia sp. Ch1-1 
prokMSA_id:94022 Burkholderia sp. wp26 isolate wp26
prokMSA_id:98470 Burkholderia sp. Kas203-3 AB114270
2.28.2.11 OXALOBACTER_GROUP 67 seqs
2.28.2.11.606 OTU 4 seqs
prokMSA_id:79788 Arctic sea ice ARK10284 
prokMSA_id:80693 clone ARKMP-20 
prokMSA_id:80915 clone ARKICE-119 
prokMSA_id:81640 clone KD6-99 
2.28.2.11.607 OTU 15 seqs
prokMSA_id:7602 Achromatium HK3
prokMSA_id:7603 Achromatium HK6
prokMSA_id:7604 Achromatium HK24
prokMSA_id:7611 Achromatium HK1
prokMSA_id:7612 Achromatium HK2
prokMSA_id:7613 Achromatium HK15
prokMSA_id:7768 Dichelobacter nodosus. X54267
prokMSA_id:7769 Dichelobacter nodosus str. 198A ATCC 27521. M35016
prokMSA_id:23044 Beta A1020 
prokMSA_id:36180 Beta Wuba70 
prokMSA_id:44985 Thiobacillus neapolitanus DSM 581 
prokMSA_id:91343 H12 
prokMSA_id:96354 beta clone SW20 AJ575693
prokMSA_id:96491 beta clone SW38
prokMSA_id:98773 beta clone SW15
2.28.2.11.608 OTU 14 seqs
prokMSA_id:12160 clone WCHB1-08
prokMSA_id:12280 str. 12-8. AB008510
prokMSA_id:12285 str. QSSC9-20
prokMSA_id:25558 WCHB1-18 
prokMSA_id:56556 Marine KMM3673 
prokMSA_id:60322 Marine KMM3928 
prokMSA_id:68700 clone p93 
prokMSA_id:69434 Agreia sp. 5-1 
prokMSA_id:79650 clone ARKMP3 
prokMSA_id:80318 Marine P_wp0234 
prokMSA_id:80946 clone ARKMP-30 
prokMSA_id:82273 clone KD9-120 
prokMSA_id:84759 Antarctic R-9112 strain R-9112 AJ441003
prokMSA_id:95873 actinobacterium clone W2
2.28.2.11.609 OTU 1 seq
prokMSA_id:96368 beta clone NE05
2.28.2.11.610 OTU 1 seq
prokMSA_id:7366 Oxalobacter formigenes str. BLISS
2.28.2.11.611 OTU 1 seq
prokMSA_id:7367 Oxalobacter formigenes str. SOX-4
2.28.2.11.612 OTU 1 seq
prokMSA_id:87579 Janthinobacterium sp. J3 
2.28.2.11.613 OTU 1 seq
prokMSA_id:94041 beta- clone Gitt-GS-155
2.28.2.11.614 OTU 1 seq
prokMSA_id:32294 beta 
2.28.2.11.615 OTU 1 seq
prokMSA_id:66301 Aquaspirillum arcticum 
2.28.2.11.616 OTU 1 seq
prokMSA_id:59892 beta clone ccspost237 
2.28.2.11.617 OTU 7 seqs
prokMSA_id:7282 str. PUS10.40. U34035
prokMSA_id:7346 LMG 16480. X92554
prokMSA_id:59896 beta clone ccspost2128 AY133100
prokMSA_id:62402 beta clone FTL28 
prokMSA_id:68775 Glacial ice CanDirty89 AF479326
prokMSA_id:79075 Phenanthrene-degrading 70-2 
prokMSA_id:92460 Janthinobacterium sp. clone cEIII43 
2.28.2.11.618 OTU 1 seq
prokMSA_id:97447 beta clone NE45
2.28.2.11.619 OTU 10 seqs
prokMSA_id:7334 str. HTB091. AB010869
prokMSA_id:7349 Duganella zoogloeoides ATCC 25935. X74914
prokMSA_id:18940 Beta Ter6 isolate Ter6
prokMSA_id:32705 Beta Ter331 isolate Ter331
prokMSA_id:50320 clone p-2518-18B5 
prokMSA_id:57762 Collimonas fungivorans strain CTE227
prokMSA_id:57763 Collimonas fungivorans strain CTE118
prokMSA_id:83537 Antarctic R-7687 strain R-7687 AJ440985
prokMSA_id:85542 Beta W-2016 parital 
prokMSA_id:91549 Beta EC4 AY337598
2.28.2.11.620 OTU 1 seq
prokMSA_id:37687 AT425_Eub48 
2.28.2.11.621 OTU 1 seq
prokMSA_id:80130 Arctic sea ice ARK10150 
2.28.2.11.622 OTU 1 seq
prokMSA_id:46509 Duganella clone MTseq15 
2.28.2.11.623 OTU 1 seq
prokMSA_id:94238 beta- clone Gitt-GS-138
2.28.2.11.624 OTU 1 seq
prokMSA_id:87409 Duganella sp. TB39 
2.28.2.11.625 OTU 1 seq
prokMSA_id:97201 beta clone NE62
2.28.2.11.626 OTU 1 seq
prokMSA_id:95642 Permafrost DT-IV29 
2.28.2.11.627 OTU 1 seq
prokMSA_id:81252 clone ZZ15C3 
2.28.2.13 RAL.EUTROPHA_GROUP 4 seqs
2.28.2.13.628 OTU 1 seq
prokMSA_id:7395 Alcaligenes sp. str. M91-3
2.28.2.13.629 OTU 2 seqs
prokMSA_id:81590 clone SB2 
prokMSA_id:82219 clone SB1 
2.28.2.13.630 OTU 1 seq
prokMSA_id:44156 Ralstonia sp. NI1 
2.28.2.14 RAL.SOLANACEARUM_GROUP 4 seqs
2.28.2.14.1 PS.SYZYGII_SUBGROUP 1 seq
2.28.2.14.1.631 OTU 1 seq
prokMSA_id:57520 Blood disease BananaE 
2.28.2.14.3 RAL.SOLAN4_SUBGROUP 1 seq
2.28.2.14.3.632 OTU 1 seq
prokMSA_id:7422 Ralstonia solanacearum ACH 0171
2.28.2.14.4 RAL.SOLANA_SUBGROUP 2 seqs
2.28.2.14.4.633 OTU 1 seq
prokMSA_id:7448 Ralstonia solanacearum ACH 0158
2.28.2.14.4.634 OTU 1 seq
prokMSA_id:7449 Ralstonia solanacearum ATCC 11696
2.28.3 GAMMA_SUBDIVISION 1633 seqs
2.28.3.2 ARHODOMONAS_AND_NITROCOCCUS_GROUP 4 seqs
2.28.3.2.635 OTU 2 seqs
prokMSA_id:63853 gamma clone ML1218J-16 
prokMSA_id:63854 gamma clone ML110M-3 
2.28.3.2.636 OTU 1 seq
prokMSA_id:41406 gamma MERTZ_21CM_15 
2.28.3.2.637 OTU 1 seq
prokMSA_id:48428 clone CR98-24-33 
2.28.3.3 ECTOTHIORHODOSPIRA_GROUP 4 seqs
2.28.3.3.638 OTU 4 seqs
prokMSA_id:17330 gamma MERTZ_21CM_152 
prokMSA_id:36761 gamma MERTZ_2CM_121 
prokMSA_id:72559 Sulfur-oxidizing NDII1.1 AF170424
prokMSA_id:93272 gamma clone KCM-B-13
2.28.3.4 THIOBACILLUS_GROUP 118 seqs
2.28.3.4.1 THB.FERROOXIDANS_SUBGROUP 7 seqs
2.28.3.4.1.639 OTU 6 seqs
prokMSA_id:7482 str. NFe4
prokMSA_id:7483 Thiobacillus sp
prokMSA_id:22453 Acidithiobacillus sp. SH 
prokMSA_id:42143 Thiobacillus sp. Fras2 AF213056
prokMSA_id:56606 Acidithiobacillus albertensis strain DSM 14366
prokMSA_id:66597 Acidithiobacillus thiooxidans strain ATCC 19377 AJ459803
2.28.3.4.1.640 OTU 1 seq
prokMSA_id:7494 Thiobacillus caldus str. KU DSM 8584
2.28.3.4.2 NSC.OCEANI_SUBGROUP 10 seqs
2.28.3.4.2.641 OTU 10 seqs
prokMSA_id:7502 Nitrosococcus oceani str. C-107 . M96395
prokMSA_id:56278 Nitrosococcus oceani strain AFC3 
prokMSA_id:70871 Nitrosococcus oceani strain AFC N. oceani AF508993
prokMSA_id:71198 Nitrosococcus oceani strain SW N. oceani AF508994
prokMSA_id:71252 Nitrosococcus oceani strain AFC24P AF508987
prokMSA_id:71278 Nitrosococcus oceani strain SWC19 AF508991
prokMSA_id:72817 Nitrosococcus oceani strain AFC36 AF508989
prokMSA_id:72842 Nitrosococcus oceani strain AFC27 AF508988
prokMSA_id:73060 Nitrosococcus oceani strain AFC5P AF508990
prokMSA_id:73804 Nitrosococcus oceani strain AFC132 AF508986
2.28.3.4.4 THC.GELATINOSA_ASSEMBLAGE 2 seqs
2.28.3.4.4.642 OTU 2 seqs
prokMSA_id:7525 Marichromatium PENDANT-18
prokMSA_id:7570 Thiorhodovibrio winogradskyi str. MBIC2776T
2.28.3.4.5 TCP.ROSEA_SUBGROUP 1 seq
2.28.3.4.5.643 OTU 1 seq
prokMSA_id:7526 Thiorhodococcus minor str. HA2P ATCC 700259
2.28.3.4.6 MCH.PURPURATUM_SUBGROUP 98 seqs
2.28.3.4.6.644 OTU 3 seqs
prokMSA_id:6379 Kingella oralis str. UB-38 CCUG 30450 . L06164
prokMSA_id:40790 clone C12-24 
prokMSA_id:92601 Neisseria sp. oral clone JC012 
2.28.3.4.6.645 OTU 6 seqs
prokMSA_id:7561 str. JTB148
prokMSA_id:31275 gamma MERTZ_2CM_291 
prokMSA_id:42824 gamma MERTZ_2CM_204 
prokMSA_id:47651 gamma MERTZ_2CM_206 
prokMSA_id:56505 clone OB3_55 
prokMSA_id:81147 clone SD164 
2.28.3.4.6.646 OTU 88 seqs
prokMSA_id:7515 Allochromatium vinosum ATCC 17899 . M26629
prokMSA_id:7558 str. Tobar01. AJ011498
prokMSA_id:7571 Isochromatium ACE-31
prokMSA_id:9023 ATCC 33888. AF170794
prokMSA_id:9026 Shewanella ANG.Sq2 str. ANG.strain Sq2
prokMSA_id:9030 Shewanella SQ10
prokMSA_id:9032 Shewanella pealeana str. ANG-SQ1
prokMSA_id:9036 Shewanella hanedai str. IC050 ACAM 585. U85908
prokMSA_id:9062 Shewanella algae str. FeRed. X81622
prokMSA_id:9112 Shewanella algae ATCC 51192 . AF005249
prokMSA_id:9130 Vibrio RE35F/12 str. RE35F/12. AF118021
prokMSA_id:9132 Vibrio aspartigenicus str. GSP-1 ATCC 49962. M98446
prokMSA_id:9133 Vibrio aspartigenicus str. GSP-1 ATCC 49962. M98446
prokMSA_id:9136 Salinivibrio costicola NCIMB 701 . X95527
prokMSA_id:9137 Salinivibrio costicola subsp. pathovar str. AV3. X95528
prokMSA_id:9138 Salinivibrio costicola subsp. pathovar str. cepa 6
prokMSA_id:9139 Salinivibrio costicola subsp. pathovar str. E-367. X95529
prokMSA_id:9140 Salinivibrio costicola subsp. pathovar str. H-178. X95532
prokMSA_id:9141 Salinivibrio costicola subsp. pathovar str. V-15. X95530
prokMSA_id:9142 Salinivibrio vallismortis DSM 8285
prokMSA_id:9149 Photobacterium histaminum str. C-8. D25308
prokMSA_id:9154 Photobacterium leiognathi str. L1 ATCC 25521 . D25309
prokMSA_id:9157 Photobacterium angustum ATCC 25915 . D25307
prokMSA_id:9159 Photobacterium profundum str. DSJ4
prokMSA_id:9160 Photobacterium profundum str. SS9
prokMSA_id:9161 str. MBIC3157
prokMSA_id:9168 Photobacterium phosphoreum ATCC 11040 . D25310
prokMSA_id:9423 str. MR21G
prokMSA_id:18104 Photobacterium sp. Asur-1 
prokMSA_id:18223 Vibrio sp. EN276 
prokMSA_id:18498 Shewanella fidelia strain KMM3582T 
prokMSA_id:20588 Photobacterium damselae subsp. damselae 
prokMSA_id:23199 gamma MERTZ_2CM_300 
prokMSA_id:28400 Shewanella alga AF005250
prokMSA_id:32525 sp. Lake Nakuru isolate 20N1 X92128
prokMSA_id:36658 Aeromonas sp. BC16 
prokMSA_id:37948 sp. Lake Bogoria isolate 10B1 X92127
prokMSA_id:38706 Photobacterium sp. HAR23 
prokMSA_id:41265 Photobacterium histaminum AB032014
prokMSA_id:42976 clone Car123rc 
prokMSA_id:44629 Shewanella sp. SG133 
prokMSA_id:45389 Vibrio sp. SG128 AB038027
prokMSA_id:46491 Shewanella sp. clone D1Mn
prokMSA_id:47581 PV-4 
prokMSA_id:47896 Shewanella fidelia strain KMM3589 AF420313
prokMSA_id:50424 Marine B-10-31 AB063324
prokMSA_id:55880 Shewanella sp. SM2-1 
prokMSA_id:56028 Shewanella sp. IK-1 
prokMSA_id:60372 Aeromonadaceae PH35 
prokMSA_id:60926 Shewanella sp. HRKC24 AB081761
prokMSA_id:60928 Shewanella sp. HRKA1 AB081760
prokMSA_id:60929 Shewanella sp. 2T11 
prokMSA_id:60933 Shewanella sp. HZ17 
prokMSA_id:63114 clone MB-A2-149 
prokMSA_id:67191 Photobacterium sp. D151 
prokMSA_id:69583 Shewanella fidelis AY170369
prokMSA_id:69757 Shewanella waksmanii AY170366
prokMSA_id:70596 Vibrio sp. LMG 19839 strain LMG 19839 AJ316208
prokMSA_id:71373 Hyphomicrobium sp. Ddeep-1 AB055793
prokMSA_id:72659 Photobacterium sp. 16 
prokMSA_id:72739 S.alga Bry X81621
prokMSA_id:73788 Vibrio sp. LMG 19840 strain LMG 19840 AJ316207
prokMSA_id:78036 Halochromatium sp. AR2201 
prokMSA_id:78198 Allochromatium sp. AT2202 
prokMSA_id:78327 Halochromatium sp. AR2202 
prokMSA_id:83294 Shewanella kaireiae strain:c931
prokMSA_id:83564 Photobacterium sp. YS27-3 AB095447
prokMSA_id:83672 Shewanella surugaensis strain:c959
prokMSA_id:87485 Shewanella colwelliana isolate KMM 3586 
prokMSA_id:88004 Shewanella japonica isolate KMM 3582 
prokMSA_id:88562 Shewanella sp. clone MBMPE21
prokMSA_id:89469 Shewanella sp. clone MBAE24
prokMSA_id:89685 Shewanella sp. clone MBAE15
prokMSA_id:90403 Shewanella sp. clone MBAE29
prokMSA_id:90686 Alcanivorax sp. clone MBAE72
prokMSA_id:91173 clone K2-30-15 AY344372
prokMSA_id:92948 Shewanella affinis 
prokMSA_id:93201 Halomonas sp. es4 isolate es4
prokMSA_id:94122 Hyphomicrobium sp. wp13 isolate wp13
prokMSA_id:94249 Shewanella sp. wp2 isolate wp2
prokMSA_id:95505 Photobacterium damselae subsp. piscicida strain K12 
prokMSA_id:96255 Photobacterium damselae subsp. piscicida strain CVD3 
prokMSA_id:97403 Photobacterium damselae subsp. damselae strain CCRC15428 AY1
prokMSA_id:97821 Photobacterium damselae subsp. piscicida strain I736 
prokMSA_id:98163 Photobacterium damselae subsp. piscicida strain CVD1 
prokMSA_id:98324 Photobacterium damselae subsp. piscicida strain PN510 AY1478
prokMSA_id:98860 clone F37 
prokMSA_id:98879 clone F47 
2.28.3.4.6.647 OTU 1 seq
prokMSA_id:32015 clone 
2.28.3.5 ACHROMATIUM_ASSEMBLAGE 51 seqs
2.28.3.5.648 OTU 2 seqs
prokMSA_id:82757 clone CCM14b AY221046
prokMSA_id:83295 clone CCM19a 
2.28.3.5.649 OTU 1 seq
prokMSA_id:7585 symbiont of Anodontia phillipiana bivalve mollusc gill
2.28.3.5.650 OTU 4 seqs
prokMSA_id:7553 unnamed organism. AF104472
prokMSA_id:43810 Olavius algarvensis sulfur-oxidizing endosymbiont 
prokMSA_id:89381 gamma clone MBMPE23
prokMSA_id:89774 gamma clone MBMPE4
2.28.3.5.651 OTU 2 seqs
prokMSA_id:7621 unnamed organism
prokMSA_id:7624 unnamed organism
2.28.3.5.653 OTU 22 seqs
prokMSA_id:7635 str. JTB255
prokMSA_id:7637 clone Sva0120
prokMSA_id:19777 gamma MERTZ_0CM_397 
prokMSA_id:25219 gamma MERTZ_2CM_40 
prokMSA_id:25684 gamma MERTZ_2CM_258 
prokMSA_id:36390 gamma MERTZ_2CM_92 
prokMSA_id:38399 gamma MERTZ_2CM_167 
prokMSA_id:41892 gamma MERTZ_2CM_55 
prokMSA_id:43949 gamma MERTZ_0CM_387 
prokMSA_id:47525 gamma MERTZ_0CM_175 AF424143
prokMSA_id:49895 gamma MERTZ_0CM_220 
prokMSA_id:51730 gamma MERTZ_2CM_304 
prokMSA_id:53877 gamma MERTZ_21CM_103 
prokMSA_id:59773 clone BB2_114 
prokMSA_id:59775 clone BB2_17 
prokMSA_id:59777 clone OB3_48 
prokMSA_id:59778 clone OB3_49 
prokMSA_id:89831 gamma clone MBMPE27
prokMSA_id:90195 gamma clone MBMPE11
prokMSA_id:90324 gamma clone MBMPE64
prokMSA_id:94878 clone A139 complete 
prokMSA_id:95836 clone B152 
2.28.3.5.654 OTU 3 seqs
prokMSA_id:7629 clone BPC023. AF154087
prokMSA_id:7760 clone BPC028
prokMSA_id:51798 SA30 
2.28.3.5.655 OTU 3 seqs
prokMSA_id:7598 symbiont of Codakia orbicularis gill
prokMSA_id:7617 symbiont of Lucina nassula. X95229
prokMSA_id:41309 Sulfur-oxidizing ODIII6 
2.28.3.5.656 OTU 4 seqs
prokMSA_id:7606 symbiont of Lucina pectinata gill
prokMSA_id:7705 Thiomicrospira JB-A1F str. JB-A1F
prokMSA_id:21925 clone T12-2 
prokMSA_id:32280 Solemya terraeregina gill symbiont U62131
2.28.3.5.657 OTU 1 seq
prokMSA_id:17560 clone KS90 
2.28.3.5.658 OTU 1 seq
prokMSA_id:7575 symbiont of Thyasira flexuosa gill
2.28.3.5.659 OTU 1 seq
prokMSA_id:7586 Dechloromarinus chlorophilus str. NSS
2.28.3.5.660 OTU 1 seq
prokMSA_id:49500 gamma MERTZ_0CM_85 
2.28.3.5.661 OTU 1 seq
prokMSA_id:30959 clone KS75 
2.28.3.5.662 OTU 5 seqs
prokMSA_id:24728 gamma MERTZ_2CM_182 
prokMSA_id:47907 gamma MERTZ_2CM_277 
prokMSA_id:49655 gamma MERTZ_0CM_226 
prokMSA_id:55719 clone OB3_198 
prokMSA_id:59780 clone OB3_140 
2.28.3.6 FRANCISELLA_GROUP 14 seqs
2.28.3.6.1 THTX.NIVEA_SUBGROUP 1 seq
2.28.3.6.1.663 OTU 1 seq
prokMSA_id:48712 gamma kpj441rc 
2.28.3.6.2 CALYPTOGENA_SYMBIONTS_SUBGROUP 2 seqs
2.28.3.6.2.664 OTU 1 seq
prokMSA_id:51711 marine gamma DHB-6 
2.28.3.6.2.665 OTU 1 seq
prokMSA_id:7675 symbiont of Calyptogena elongata gill
2.28.3.6.6 FNC.TULARENSIS_SUBGROUP 11 seqs
2.28.3.6.6.666 OTU 11 seqs
prokMSA_id:7722 Wolbachia persica ATCC VR-331 . M21292
prokMSA_id:7729 Francisella novicida str. Utah 11 ATCC 15482 . L26084
prokMSA_id:7731 Francisella philomiragia ATCC 25015
prokMSA_id:7738 Francisella philomiragia ATCC 25017
prokMSA_id:7744 Francisella tularensis
prokMSA_id:7749 unnamed organism
prokMSA_id:7752 Francisella tularensis str. SCHU FSC 043
prokMSA_id:7757 Francisella tularensis subsp. tularensis str. lvs ATCC 6223
prokMSA_id:82787 Francisella tularensis strain 3523 AY243028
prokMSA_id:84287 Francisella philomiragia strain 2669 
prokMSA_id:87566 Cf. Francisella sp. CYH-2002 ; -23S intergenic spacer comple
2.28.3.7 DICHELOBACTER_GROUP 3 seqs
2.28.3.7.667 OTU 2 seqs
prokMSA_id:7763 Cardiobacterium hominis ATCC 15826 . M35014
prokMSA_id:7764 clone v1
2.28.3.7.668 OTU 1 seq
prokMSA_id:66337 Halothiobacillus sp. RA13 
2.28.3.8 XANTHOMONAS_GROUP 60 seqs
2.28.3.8.1 NV.RAMOSA_SUBGROUP 3 seqs
2.28.3.8.1.669 OTU 2 seqs
prokMSA_id:29544 clone CRP99-43 
prokMSA_id:93707 gamma clone JG36-GS-52
2.28.3.8.1.670 OTU 1 seq
prokMSA_id:37497 gamma clone BIrii5
2.28.3.8.2 RHN.LINDANICLASTICUS_SUBGROUP 7 seqs
2.28.3.8.2.671 OTU 7 seqs
prokMSA_id:7291 str. ND5
prokMSA_id:7303 Herbaspirillum G8A1 str. G8A1. AJ012069
prokMSA_id:58574 Herbaspirillum sp. PIV-34-1 strain PIV-34-1
prokMSA_id:75665 beta clone S15A-MN107
prokMSA_id:81095 clone KD9-60 
prokMSA_id:93490 Ultramicrobacterium str. Um1 
prokMSA_id:94668 beta- clone S15B-MN104 AJ583172
2.28.3.8.4 LYB.ANTIBIOTICUS_SUBGROUP 47 seqs
2.28.3.8.4.672 OTU 43 seqs
prokMSA_id:7560 clone SRang2.5
prokMSA_id:7655 Thiothrix nivea str. JP2 DSM 5205 . L40993
prokMSA_id:7657 clone SRang1.40. AF047621
prokMSA_id:7844 Xylella fastidiosa str. PCE-FG ATCC 35881. AF159572
prokMSA_id:7845 Xylella fastidiosa str. r116v11. AF159573
prokMSA_id:7846 Xylella fastidiosa str. PD28-5. AF159574
prokMSA_id:7847 Xylella fastidiosa str. CVC93-2. AF159575
prokMSA_id:7848 Xylella fastidiosa str. Mul-2
prokMSA_id:7849 Xylella fastidiosa str. OSL92-3. AF159577
prokMSA_id:7850 Xylella fastidiosa str. PWT-22 ATCC 35878. AF159578
prokMSA_id:7851 Xylella fastidiosa str. PLS2-9
prokMSA_id:7852 Xylella fastidiosa str. PP4-5
prokMSA_id:7853 str. PCE-FF ATCC 35879
prokMSA_id:18746 Thiothrix sp. CT3 
prokMSA_id:19739 Xylella fastidiosa isolate plant#5 CVC 
prokMSA_id:20550 Xylella fastidiosa strain CO.01 
prokMSA_id:21170 Xylella fastidiosa strain PL.788 
prokMSA_id:21608 Xylella fastidiosa strain GR.8935 
prokMSA_id:22089 Stenotrophomonas sp. clone KL-59-7-5 
prokMSA_id:22966 beta clone KL-15-2-16 
prokMSA_id:25098 Xylella fastidiosa strain PE.PLS 
prokMSA_id:27520 Xylella fastidiosa strain ATCC 35874 
prokMSA_id:30732 Xylella fastidiosa 9a5c section 7 of 229 of the complete gen
prokMSA_id:37302 Thiothrix sp. EJ1M-B 
prokMSA_id:38006 Thiothrix sp. EJ2M-B 
prokMSA_id:41278 Stenotrophomonas sp. NAP6 
prokMSA_id:41363 beta clone KL-59-7-1 
prokMSA_id:43018 Thiothrix sp. SNR-3 AB042543
prokMSA_id:50284 Xylella fastidiosa 9a5c complete genome
prokMSA_id:50520 Xylella fastidiosa strain CI.52 
prokMSA_id:50654 Xylella fastidiosa isolate Found 4 
prokMSA_id:51235 Xylella fastidiosa 9a5c section 16 of 229 of the complete ge
prokMSA_id:51545 Xylella fastidiosa strain ATCC 35873 
prokMSA_id:51876 Xylella fastidiosa 9a5c complete genome
prokMSA_id:52510 Stenotrophomonas sp. clone KL-15-2-22 
prokMSA_id:59535 Enrichment culture LB-P clone LB-P 
prokMSA_id:64660 Xanthomonas sp. clone burs_22 
prokMSA_id:66929 clone SHA-39
prokMSA_id:74745 Xylella fastidiosa isolate Cafe 20 
prokMSA_id:74968 clone:TCRS11
prokMSA_id:79259 Xylella fastidiosa Temecula1 section 1 of 9 of the complete 
prokMSA_id:79335 Xylella fastidiosa Temecula1 complete genome
prokMSA_id:91520 Thermomonas hydrothermalis 
2.28.3.8.4.673 OTU 1 seq
prokMSA_id:75877 gamma clone S15A-MN135
2.28.3.8.4.674 OTU 3 seqs
prokMSA_id:31705 clone CR99-35-54 
prokMSA_id:39084 gamma clone SM1E05 
prokMSA_id:39919 gamma clone SM1E04 
2.28.3.8.5 STE.MALTOPHILIA_SUBGROUP 1 seq
2.28.3.8.5.675 OTU 1 seq
prokMSA_id:81218 Stenotrophomonas sp. clone ckl32 
2.28.3.8.7 XAN.CAMPESTRIS_SUBGROUP 2 seqs
2.28.3.8.7.676 OTU 1 seq
prokMSA_id:36648 SA32 
2.28.3.8.7.677 OTU 1 seq
prokMSA_id:60576 clone B63 
2.28.3.9 LEGIONELLA_GROUP 57 seqs
2.28.3.9.1 LEGIONELLA_SUBGROUP 57 seqs
2.28.3.9.1.1 FLU.DUMOFFII_SUBGROUP 1 seq
2.28.3.9.1.1.678 OTU 1 seq
prokMSA_id:7908 Legionella sp. str. LLAP8
2.28.3.9.1.2 LEG.WADSWORTHII_SUBGROUP 12 seqs
2.28.3.9.1.2.679 OTU 12 seqs
prokMSA_id:7906 Fluoribacter dumoffii str. NY-23 ATCC 33279 . X73405
prokMSA_id:7912 Legionella wadsworthii NCTC 11532
prokMSA_id:7913 Legionella wadsworthii ATCC 33877 . X73401
prokMSA_id:7914 Legionella cherrii ATCC 35252
prokMSA_id:7948 Legionella sp. str. LLAP2
prokMSA_id:7950 Legionella sp. str. LLAP6
prokMSA_id:9077 Shewanella KMM3299 KMM 3299. AF145921
prokMSA_id:87528 Shewanella japonica isolate KMM 3597 AF500075
prokMSA_id:87894 Shewanella japonica isolate KMM 3590 AF500076
prokMSA_id:87995 Shewanella japonica isolate KMM 3577 
prokMSA_id:89485 Shewanella sp. LT17 
prokMSA_id:93813 Thialkalivibrio thiocyanodenitrificans strain ARhD 
2.28.3.9.1.5 FLU.BOZEMANAE_SUBGROUP 2 seqs
2.28.3.9.1.5.680 OTU 2 seqs
prokMSA_id:7923 Fluoribacter bozemanae str. WIGA NCTC 11368. M36031
prokMSA_id:7924 Fluoribacter bozemanae str. spg2 NCTC 11975
2.28.3.9.1.7 LEG.LYTICA_SUBGROUP 15 seqs
2.28.3.9.1.7.681 OTU 1 seq
prokMSA_id:7937 Legionella lytica str. LLAP-3 PCM 2298
2.28.3.9.1.7.682 OTU 1 seq
prokMSA_id:50533 GR-371.III.80 clone GR-371.III.80
2.28.3.9.1.7.683 OTU 6 seqs
prokMSA_id:7938 Legionella lytica str. LLAP-3 PCM 2298 . X66835
prokMSA_id:7939 Legionella sp. str. LLAP12
prokMSA_id:7945 Legionella lyticum str. LLAP3
prokMSA_id:7947 Legionella sp. str. LLAP11
prokMSA_id:7949 Legionella sp. str. LLAP4
prokMSA_id:21751 clone GOUTA10 
2.28.3.9.1.7.684 OTU 3 seqs
prokMSA_id:7940 Legionella lytica str. LLAP-3 PCM 2298
prokMSA_id:7952 Legionella sp. str. LLAP9
prokMSA_id:7957 str. LLAP-14
2.28.3.9.1.7.685 OTU 4 seqs
prokMSA_id:7946 Legionella sp. str. LLAP10
prokMSA_id:7961 Legionella gresilensis str. Greoux 11 D13 ATCC 700509
prokMSA_id:7997 Legionella feeleii str. WO-44C ATCC 35072 . X73395
prokMSA_id:7998 Legionella feeleii str. 691-WI-H ATCC 35849. X73406
2.28.3.9.1.9 LEG.PNEUMOPHILA_SUBGROUP 2 seqs
2.28.3.9.1.9.686 OTU 2 seqs
prokMSA_id:7962 Legionella pneumophila subsp. pascullei str. U8W ATCC 33737
prokMSA_id:8010 Legionella jamestowniensis ATCC 35298 . X73409
2.28.3.9.1.11 LEG.ISRAELENSIS_SUBGROUP 13 seqs
2.28.3.9.1.11.687 OTU 1 seq
prokMSA_id:7981 Legionella oakridgensis NCTC 11531
2.28.3.9.1.11.688 OTU 12 seqs
prokMSA_id:7921 Legionella anisa ATCC 35292 . X73394
prokMSA_id:7928 Legionella sainthelensi ATCC 35248 . X73399
prokMSA_id:7933 Legionella cincinnatiensis ATCC 43753 . X73407
prokMSA_id:7934 Legionella steigerwaltii ATCC 35302
prokMSA_id:7936 Legionella tucsonensis NCTC 124439
prokMSA_id:7956 Legionella shakespearei NCTC 12829
prokMSA_id:7974 Legionella birminghamensis NCTC 12437
prokMSA_id:7983 Legionella israelensis ATCC 43119. X73408
prokMSA_id:7984 Legionella israelensis NCTC 12010
prokMSA_id:37718 Vibrio sp. OS53 AB038028
prokMSA_id:54246 Shewanella baltica 
prokMSA_id:84447 Alteromonadaceae R2 
2.28.3.9.1.14 LEG.ERYTHRA_SUBGROUP 6 seqs
2.28.3.9.1.14.689 OTU 6 seqs
prokMSA_id:7991 Tatlockia maceachernii str. PX-1-G2-E2 NCTC 11982
prokMSA_id:7993 Tatlockia maceachernii str. PX-1-G2-E2 NCTC 11982 . X60081
prokMSA_id:8004 Legionella erythra str. SE-32A-C8 ATCC 35303
prokMSA_id:8013 Legionella jordanis NCTC 11533
prokMSA_id:8014 Legionella jordanis ATCC 33623 . X73396
prokMSA_id:48785 Legionella maceachernii 
2.28.3.9.1.15 LEG.BRUNENSIS_SUBGROUP 6 seqs
2.28.3.9.1.15.690 OTU 6 seqs
prokMSA_id:7959 Legionella pneumophila subsp. pneumophila str. Philadelphia 
prokMSA_id:7960 Legionella pneumophila subsp. pneumophila str. Chicago 2 ATC
prokMSA_id:7976 Legionella quinlivanii NCTC 12433
prokMSA_id:8002 Legionella rubrilucens ATCC 35304 . X73398
prokMSA_id:8006 Legionella brunensis NCTC 12240
prokMSA_id:8007 Legionella brunensis
2.28.3.10 METHYLOMONAS_GROUP 18 seqs
2.28.3.10.3 MLC.CAPSULATUS_SUBGROUP 5 seqs
2.28.3.10.3.691 OTU 4 seqs
prokMSA_id:34345 gamma MERTZ_2CM_166 
prokMSA_id:38857 Nitrosospira sp. MERTZ_2CM_3 
prokMSA_id:49937 Nitrosomonas sp. clone GR-Sh2-23
prokMSA_id:69607 Nitrosospira sp. Nl5 
2.28.3.10.3.692 OTU 1 seq
prokMSA_id:51087 clone CR99-24-23 
2.28.3.10.4 MLM.METHANICA_SUBGROUP 13 seqs
2.28.3.10.4.693 OTU 9 seqs
prokMSA_id:8208 Marinomonas communis ATCC 27118 . NONE
prokMSA_id:8210 Marinomonas protea
prokMSA_id:8212 Marinomonas vaga ATCC 27119 . NONE
prokMSA_id:8215 str. ; ATCC 700492. AF063027
prokMSA_id:29708 Marinomonas SIC.163 
prokMSA_id:31898 Marinomonas sp. kbs18 
prokMSA_id:46306 Marinomonas communis AF173967
prokMSA_id:50527 Marinomonas SIC.129 
prokMSA_id:53230 Marinomonas sp. kbs31 
2.28.3.10.4.694 OTU 1 seq
prokMSA_id:40125 Methylobacter sp. LW14 
2.28.3.10.4.695 OTU 3 seqs
prokMSA_id:8055 Methylomonas rubra
prokMSA_id:8059 Methylomicrobium pelagicum ACM 3505. X72775
prokMSA_id:8065 Methylomonas methanica str. S1 ATCC 35067 . NONE
2.28.3.11 OCEANOSPIRILLUM_GROUP 84 seqs
2.28.3.11.1 HALOMONAS_SUBGROUP 43 seqs
2.28.3.11.1.2 MRS.MINUTULUM_SUBGROUP 4 seqs
2.28.3.11.1.2.696 OTU 4 seqs
prokMSA_id:8110 Marinospirillum minutulum ATCC 19193 . NONE
prokMSA_id:8111 Marinospirillum minutulum ATCC 19193
prokMSA_id:8112 Marinospirillum megaterium
prokMSA_id:33068 Hailaer soda lake Z4 
2.28.3.11.1.3 ZYB.PALMAE_SUBGROUP 16 seqs
2.28.3.11.1.3.697 OTU 2 seqs
prokMSA_id:8114 Zymobacter palmae str. T109 IAM 14233
prokMSA_id:55625 Zymobacter palmae ; tRNA-Ile and tRNA-Ala genes complete ; a
2.28.3.11.1.3.698 OTU 1 seq
prokMSA_id:8122 symbiont of Siphoninus phillyreae ash whitefly
2.28.3.11.1.3.699 OTU 13 seqs
prokMSA_id:8121 symbiont of Bemisia tabaci sweetpotato whitefly
prokMSA_id:19222 Primary endosymbiont of Bemisia tabaci clone MEX4 AF400462
prokMSA_id:20005 Primary endosymbiont of Bemisia tabaci clone MEX12 
prokMSA_id:28101 Primary endosymbiont of Bemisia tabaci clone AZA 
prokMSA_id:29094 Primary endosymbiont of Bemisia tabaci clone TANZ15 
prokMSA_id:34503 Primary endosymbiont of Bemisia tabaci clone AUS 
prokMSA_id:36328 Primary endosymbiont of Bemisia tabaci clone UG23 AF400466
prokMSA_id:39721 Primary endosymbiont of Bemisia tabaci clone UG39 
prokMSA_id:42418 Primary endosymbiont of Bemisia tabaci clone CAMW15 AF400454
prokMSA_id:43103 Primary endosymbiont of Bemisia tabaci clone TANZ18 
prokMSA_id:43537 Primary endosymbiont of Bemisia tabaci clone TANZ3 
prokMSA_id:73878 Primary endosymbiont of Bemisia argentifolii ; tRNA-Ile comp
prokMSA_id:88180 Candidatus Portiera aleyrodidarum genomic 
2.28.3.11.1.6 HLM.DESIDERATA_SUBGROUP 7 seqs
2.28.3.11.1.6.700 OTU 7 seqs
prokMSA_id:22591 sp. Crater Lake isolate 75C4 X92146
prokMSA_id:34303 sp. Lake Bogoria isolate WB4 X92145
prokMSA_id:49544 sp. Lake Elmenteita isolate 44E3
prokMSA_id:80433 Marine P_wp0224 
prokMSA_id:93482 Halomonas sp. wp38 isolate wp38
prokMSA_id:93560 Halomonas sp. wp39 isolate wp39
prokMSA_id:93868 Halomonas sp. mp6 isolate mp6
2.28.3.11.1.7 HLM.SUBGLACIESCOLA_SUBGROUP 8 seqs
2.28.3.11.1.7.701 OTU 1 seq
prokMSA_id:38116 Halomonas subglaciescola strain DSM 4683
2.28.3.11.1.7.702 OTU 2 seqs
prokMSA_id:54333 Halomonas sp. NIBH P1H22 
prokMSA_id:63144 Halomonas sp. YIM-kkny11 
2.28.3.11.1.7.703 OTU 1 seq
prokMSA_id:8139 Halomonas ORGANIC-2
2.28.3.11.1.7.704 OTU 4 seqs
prokMSA_id:8163 Halomonas halophila str. F5-7 DSM 4770 . M93353
prokMSA_id:45509 Gamma MPD-53 
prokMSA_id:47600 Gamma MPD-51 
prokMSA_id:52456 Gamma MPD-61 
2.28.3.11.1.8 HLM.ELONGATA_SUBGROUP 8 seqs
2.28.3.11.1.8.705 OTU 3 seqs
prokMSA_id:8162 Halomonas halmophila ATCC 19717 . M59153
prokMSA_id:26353 Halomonas halmophila strain ATCC 19717
prokMSA_id:53048 sp. Lake Elmenteita isolate WE5
2.28.3.11.1.8.706 OTU 2 seqs
prokMSA_id:8164 Halomonas salina ATCC 49509 . L42617
prokMSA_id:23570 sp. Lake Bogoria isolate WB2
2.28.3.11.1.8.707 OTU 3 seqs
prokMSA_id:8130 Chromohalobacter marismortui str. A-65. X87220
prokMSA_id:8171 Halomonas salina ATCC 49509 . X87217
prokMSA_id:46225 sp. Lake Bogoria isolate 8B1
2.28.3.11.2 OSP.MARIS_SUBGROUP 32 seqs
2.28.3.11.2.708 OTU 12 seqs
prokMSA_id:8176 Oceanospirillum multiglobuliferum IFO 13614
prokMSA_id:8404 Microbulbifer hydrolyticus str. IRE-31. U58338
prokMSA_id:8407 str. BD2-13
prokMSA_id:37695 clone C12-34 AF332265
prokMSA_id:45956 gamma clone CD4E1 AY038559
prokMSA_id:51065 Microbulbifer salipaludis strain SM-1 
prokMSA_id:55775 Pseudomonas elongata strain DSM 6810 
prokMSA_id:83122 Pseudomonas sp. CJ11064 
prokMSA_id:83738 Microbulbifer sp. CJ11049 
prokMSA_id:85971 Pseudomonas sp. CJ11075 
prokMSA_id:92482 gamma clone PLY-P3-45 
prokMSA_id:95512 Microbulbifer sp. JAMB-A7 
2.28.3.11.2.709 OTU 9 seqs
prokMSA_id:17072 gamma CHAB-II-39 3' 
prokMSA_id:21417 gamma MB11E02 
prokMSA_id:33605 gamma KTc1112 
prokMSA_id:45850 OCS5 
prokMSA_id:53597 gamma MB12G02 and 23S genes 
prokMSA_id:54612 gamma MB12D03 ; and 23S complete 
prokMSA_id:54824 gamma MB11B08 and 23S genes 
prokMSA_id:54972 gamma MB11G09 and 23S genes 
prokMSA_id:69857 gamma CHAB-III-1 5' AJ240912
2.28.3.11.2.710 OTU 9 seqs
prokMSA_id:8177 clone OCS44
prokMSA_id:8643 clone OCS5
prokMSA_id:8790 clone OM10
prokMSA_id:18789 gamma NAC11-19 
prokMSA_id:19508 marine ZD0107 
prokMSA_id:40069 gamma Arctic97A-18 
prokMSA_id:54017 EBAC27G05 and 23S genes 
prokMSA_id:55020 gamma MB12G11 and 23S genes 
prokMSA_id:92279 gamma clone PLY-P1-108 AY354844
2.28.3.11.2.711 OTU 1 seq
prokMSA_id:98298 Marine gamma HTCC2178 
2.28.3.11.2.712 OTU 1 seq
prokMSA_id:59781 clone BB2_169 
2.28.3.11.3 MARINOMONAS_ASSEMBLAGE 9 seqs
2.28.3.11.3.713 OTU 7 seqs
prokMSA_id:41925 ECS40 
prokMSA_id:57488 Gamma Y-134 
prokMSA_id:79245 UMB8C 
prokMSA_id:79509 Gamma UMB6E 
prokMSA_id:81975 Carbazole-degrading CAR-SF 
prokMSA_id:95209 clone B129 
prokMSA_id:96880 clone D64 
2.28.3.11.3.714 OTU 2 seqs
prokMSA_id:8205 Oceanospirillum jannaschii ATCC 27135 . NONE
prokMSA_id:8206 Oceanospirillum jannaschii IFO 15466
2.28.3.12 ALCANIVORAX_AND_FUNDIBACTER_GROUP 1 seq
2.28.3.12.715 OTU 1 seq
prokMSA_id:23838 gamma clone BIqi1
2.28.3.13 PSEUDOMONAS_AND_RELATIVES 305 seqs
2.28.3.13.1 ACINETOBACTER_SUBGROUP 48 seqs
2.28.3.13.1.1 MRX.CATARRHALIS_SUBGROUP 3 seqs
2.28.3.13.1.1.716 OTU 1 seq
prokMSA_id:8248 Moraxella equi str. 327/72
2.28.3.13.1.1.717 OTU 2 seqs
prokMSA_id:8244 Moraxella lacunata str. A947
prokMSA_id:56708 Moraxella sp. ATCC 29468 strain:IAM 14971
2.28.3.13.1.7 ACN.LWOFFII_SUBGROUP 45 seqs
2.28.3.13.1.7.718 OTU 4 seqs
prokMSA_id:78649 Acinetobacter lwoffii 
prokMSA_id:89854 Sphingobacterium antarcticum isolate 6B1Y
prokMSA_id:89870 Acinetobacter lwoffii strain 1E 
prokMSA_id:95441 Glacial ice MS-T2-09 
2.28.3.13.1.7.719 OTU 6 seqs
prokMSA_id:8310 Acinetobacter calcoaceticus ATCC 33604. M34139
prokMSA_id:8322 Acinetobacter sp. DSM 587. X89709
prokMSA_id:16782 Acinetobacter sp. RUH53T 
prokMSA_id:17087 Acinetobacter sp. LUH3790 
prokMSA_id:45836 Acinetobacter sp. LUH1470 strain LUH1470
prokMSA_id:49424 Acinetobacter sp. RUH1139 
2.28.3.13.1.7.720 OTU 13 seqs
prokMSA_id:8331 Acinetobacter calcoaceticus
prokMSA_id:8384 Acinetobacter Hop10 str. Hop10
prokMSA_id:8387 clone T39
prokMSA_id:8390 Acinetobacter sp. str. 1F-19. X86591
prokMSA_id:8391 Acinetobacter johnsonii str. P152
prokMSA_id:35076 Acinetobacter sp. phenon 2 strain LUH5832
prokMSA_id:35395 gamma BioIuz K38 
prokMSA_id:57602 clone P3-34 
prokMSA_id:77294 Acinetobacter johnsonii strain SAFR-006 AY167841
prokMSA_id:78415 Acinetobacter sp. 11 
prokMSA_id:81305 Acinetobacter sp. HJ2 
prokMSA_id:90549 Acinetobacter calcoaceticus strain AVP2-2 
prokMSA_id:98802 Glacial ice ML-22 
2.28.3.13.1.7.721 OTU 20 seqs
prokMSA_id:8342 Acinetobacter sp. DSM 590
prokMSA_id:8343 Acinetobacter OM-E81 str. OM-H10
prokMSA_id:8351 Acinetobacter haemolyticus DSM 6962 . X81662
prokMSA_id:29502 Acinetobacter sp. ST-550 
prokMSA_id:29842 Vestimentiferan symbiont TW-2 AB042404
prokMSA_id:33110 Acinetobacter sp. phenon 3 strain LUH1740 Aci649
prokMSA_id:40823 Acinetobacter sp. phenon 3 strain LUH1737 Aci646
prokMSA_id:45607 Gamma MPD-97 
prokMSA_id:48977 Acinetobacter sp. BC187 
prokMSA_id:52109 Acinetobacter sp. phenon 3 strain LUH1742T Aci651
prokMSA_id:56588 clone Phe66 
prokMSA_id:60333 clone Phe12 
prokMSA_id:60335 clone Phe100 
prokMSA_id:60344 clone Glu14 
prokMSA_id:60346 clone Caf26 
prokMSA_id:64652 Acinetobacter sp. clone 91_11 
prokMSA_id:64656 Acinetobacter sp. clone 88_17 
prokMSA_id:64666 Acinetobacter sp. clone 349_19 
prokMSA_id:72138 Acinetobacter sp. clone 349_15 AF467298
prokMSA_id:84391 gamma 
2.28.3.13.1.7.722 OTU 2 seqs
prokMSA_id:8375 Acinetobacter calcoaceticus DSM 30009
prokMSA_id:66621 Acinetobacter sp. SMCC B0208 
2.28.3.13.2 TEREDINIBACTER_SUBGROUP 4 seqs
2.28.3.13.2.723 OTU 4 seqs
prokMSA_id:27115 Gamma EHK-1 
prokMSA_id:36509 marine ZD0117 
prokMSA_id:51824 clone T26-35 
prokMSA_id:67775 isolate C1_B021 
2.28.3.13.5 PS.AERUGINOSA_SUBGROUP 1 seq
2.28.3.13.5.724 OTU 1 seq
prokMSA_id:64506 Pseudomonas andersonii 
2.28.3.13.7 PS.STUTZERI_SUBGROUP 9 seqs
2.28.3.13.7.725 OTU 8 seqs
prokMSA_id:8463 str. HTB028. AB010854
prokMSA_id:8532 Azotobacter chroococcum ATCC 9043
prokMSA_id:38888 Pseudomonas stutzeri complete 
prokMSA_id:86885 Pseudomonas stutzeri strain 3C18
prokMSA_id:87730 Pseudomonas stutzeri strain 28a74
prokMSA_id:87996 Pseudomonas stutzeri strain 28a22
prokMSA_id:93653 Pseudomonas sp. wp17 isolate wp17
prokMSA_id:94197 Psychrobacter sp. es9 isolate es9
2.28.3.13.7.726 OTU 1 seq
prokMSA_id:8464 str. HTA208
2.28.3.13.8 PS.MENDOCINA_SUBGROUP 6 seqs
2.28.3.13.8.727 OTU 1 seq
prokMSA_id:27396 Pseudomonas SIC.711 
2.28.3.13.8.728 OTU 1 seq
prokMSA_id:66198 Pseudomonas sp. strain KI
2.28.3.13.8.729 OTU 4 seqs
prokMSA_id:34670 gamma HOC21 
prokMSA_id:35099 gamma HOC25 
prokMSA_id:48284 gamma HOC22 
prokMSA_id:54855 gamma HOC34 
2.28.3.13.11 PS.STRAMINEA_SUBGROUP 3 seqs
2.28.3.13.11.730 OTU 3 seqs
prokMSA_id:7881 clone SRang1.33
prokMSA_id:8563 clone SRang1.28
prokMSA_id:67826 gamma clone 44a-U2-13 
2.28.3.13.13 PS.PUTIDA_SUBGROUP 31 seqs
2.28.3.13.13.731 OTU 16 seqs
prokMSA_id:20744 gamma clone CD14E8 
prokMSA_id:20991 gamma clone CD14F1 
prokMSA_id:20992 gamma MERTZ_2CM_38 
prokMSA_id:23175 clone CD1401D11 
prokMSA_id:24873 gamma clone CD14D8 
prokMSA_id:25472 gamma MERTZ_2CM_175 
prokMSA_id:25966 gamma MERTZ_2CM_319 
prokMSA_id:31455 Pseudoalteromonas ruthenica strain KMM290 AF316890
prokMSA_id:32295 gamma clone CD14B5 
prokMSA_id:40223 Pseudoalteromonas ruthenica strain KMM300 AF316891
prokMSA_id:46713 gamma clone CD14B9 
prokMSA_id:50918 gamma MT33 
prokMSA_id:55882 clone OB3_138 
prokMSA_id:59785 clone BB2_184 
prokMSA_id:79636 clone BolB7 
prokMSA_id:80466 clone BolB2 
2.28.3.13.13.732 OTU 6 seqs
prokMSA_id:16843 gamma SUR-FREE-40 
prokMSA_id:47749 ECS30 
prokMSA_id:66816 Pseudomonas sp. VKM B-2265 
prokMSA_id:74387 gamma CHAB-III-7 5' AJ240921
prokMSA_id:91158 clone L8-79 
prokMSA_id:92243 gamma clone PLY-P3-21 
2.28.3.13.13.733 OTU 1 seq
prokMSA_id:68625 clone KRA30+04 
2.28.3.13.13.734 OTU 1 seq
prokMSA_id:96890 gamma clone NAB25 
2.28.3.13.13.735 OTU 1 seq
prokMSA_id:65400 Pseudomonas fluorescens 
2.28.3.13.13.736 OTU 1 seq
prokMSA_id:89310 Pseudomonas sp. KR9 
2.28.3.13.13.737 OTU 1 seq
prokMSA_id:18785 clone PDSB014 
2.28.3.13.13.738 OTU 1 seq
prokMSA_id:8596 Pseudomonas putida str. MnB1
2.28.3.13.13.739 OTU 1 seq
prokMSA_id:83881 Pseudomonas putida complete 
2.28.3.13.13.740 OTU 1 seq
prokMSA_id:85824 Pseudomonas putida complete strain:NA3
2.28.3.13.13.741 OTU 1 seq
prokMSA_id:77348 Pseudomonas sp. QDA 
2.28.3.13.14 PSEUDOMONAS_SUBGROUP 197 seqs
2.28.3.13.14.1 PS.AMYGDALI_SUBGROUP 121 seqs
2.28.3.13.14.1.742 OTU 2 seqs
prokMSA_id:77535 Symbiont LP3 of Lyrodus pedicellatus 
prokMSA_id:97698 clone D90 
2.28.3.13.14.1.743 OTU 99 seqs
prokMSA_id:8562 Pseudomonas flavescens str. B62 NCPPB 3063
prokMSA_id:8590 Pseudomonas putida str. MTB5. AF131104
prokMSA_id:8605 Pseudomonas fulva IAM 1529 . D84015
prokMSA_id:8607 Pseudomonas amygdali LMG 2123
prokMSA_id:8611 Pseudomonas caricapapayae ATCC 33615
prokMSA_id:8620 Pseudomonas corrugata ATCC 29736
prokMSA_id:8626 str. DhA-51
prokMSA_id:8633 Pseudomonas viridiflava LMG 2352
prokMSA_id:8638 Pseudomonas cichorii str. PC 1 ATCC 10857. AB021398
prokMSA_id:8639 Pseudomonas syringae subsp. syringae str. pathovar reference
prokMSA_id:8642 str. S2
prokMSA_id:8645 Pseudomonas IpA-93 str. IpA-93
prokMSA_id:8648 Pseudomonas syringae ATCC 13522. AB021402
prokMSA_id:8652 Pseudomonas Ant9 str. Ant9
prokMSA_id:8653 Pseudomonas mandelii CIP 105273
prokMSA_id:8657 Pseudomonas chlororaphis LMG 5004 . Z76657
prokMSA_id:8658 Pseudomonas meliae MAFF 301463. AB021382
prokMSA_id:8659 Pseudomonas coronafaciens LMG 13190. Z76660
prokMSA_id:8672 Pseudomonas veronii str. CFML 92-134 CIP 104663
prokMSA_id:8678 Pseudomonas A2 str. A2. AF195875
prokMSA_id:8679 Pseudomonas KA2 str. KA2. AF195876
prokMSA_id:8695 Pseudomonas H1 str. H1. AF195777
prokMSA_id:8699 Pseudomonas DSM12877 str. PS+ DSM 12877
prokMSA_id:8707 Pseudomonas rhodesiae str. CFML 92-111 CIP 104664
prokMSA_id:8771 Pseudomonas QSSC1-9 str. QSSC1-9
prokMSA_id:8810 str. MBIC3957
prokMSA_id:16541 Pseudomonas syringae pv. phaseolicola 
prokMSA_id:17860 Pseudomonas sp. ST5 
prokMSA_id:24702 Pseudomonas fluorescens strain Biotype B
prokMSA_id:31850 Pseudomonas syringae pv. theae 
prokMSA_id:32516 Pseudomonas sp. PM-2001 
prokMSA_id:33282 Pseudomonas fluorescens operon rrnB complete 
prokMSA_id:35287 Pseudomonas kilonensis strain 520-20
prokMSA_id:37579 Pseudomonas fluorescens strain Biotype G
prokMSA_id:40694 Pseudomonas sp. K319 
prokMSA_id:40738 Pseudomonas sp. LAB-36 
prokMSA_id:42258 Pseudomonas syringae pv. mori 
prokMSA_id:42527 Blackwater bioreactor BW32 
prokMSA_id:43042 Pseudomonas syringae pv. glycinea 
prokMSA_id:43799 Pseudomonas syringae pv. eriobotryae 
prokMSA_id:45704 Pseudomonas syringae pv. myricae 
prokMSA_id:46201 Pseudomonas fluorescens operon rrnC 
prokMSA_id:47594 Pseudomonas putida strain:P-2 AB038136
prokMSA_id:47854 Pseudomonas syringae pv. actinidiae 
prokMSA_id:47897 Pseudomonas sp. 2N1-1 
prokMSA_id:50673 Pseudomonas syringae pv. maculicola 
prokMSA_id:50962 Pseudomonas syringae pv. morsprunorum 
prokMSA_id:51921 Pseudomonas syringae pv. atropurpurea 
prokMSA_id:52123 Pseudomonas syringae pv. tagetis 
prokMSA_id:52398 Pseudomonas flavescens isolate ICMP 13539; ATCC 51555
prokMSA_id:52556 Pseudomonas sp. LAB-06 
prokMSA_id:52734 Pseudomonas extremorientalis 
prokMSA_id:55485 Pseudomonas sp. OPS1 
prokMSA_id:59203 Pseudomonas veronii strain UFZ-B547 
prokMSA_id:59301 Pseudomonas veronii UFZ-B549 
prokMSA_id:63915 Pseudomonas congelans strain DSM 14939T
prokMSA_id:63918 Pseudomonas tremae strain CFBP 6111T
prokMSA_id:63919 Pseudomonas cannabina strain CFBP 2341T
prokMSA_id:66023 Pseudomonas rhodesiae strain KK1 complete 
prokMSA_id:66956 Pseudomonas sp. NMX 
prokMSA_id:69781 Pseudomonas caricapapayae 
prokMSA_id:70197 Pseudomonas chlororaphis isolate ICMP 13613; ATCC 9446 AJ308
prokMSA_id:72079 Pseudomonas syringae isolate ICMP 3023; ATCC 19310 AJ308316
prokMSA_id:72628 Pseudomonas tolaasii complete AF348507
prokMSA_id:72657 Pseudomonas corrugata 
prokMSA_id:74250 Pseudomonas corrugata complete AF348508
prokMSA_id:74257 Pseudomonas fulva complete D84015
prokMSA_id:75144 Pseudomonas putida KT2440 section 3 of 21 of the complete ge
prokMSA_id:75350 Pseudomonas putida KT2440 section 5 of 21 of the complete ge
prokMSA_id:75843 gamma clone S15A-MN7
prokMSA_id:76313 Pseudomonas putida KT2440 section 2 of 21 of the complete ge
prokMSA_id:76538 Pseudomonas putida KT2440 section 18 of 21 of the complete g
prokMSA_id:77301 Pseudomonas sp. S16-2 
prokMSA_id:77313 Pseudomonas sp. gs14 AF456213
prokMSA_id:77337 Pseudomonas sp. S55-6 
prokMSA_id:77356 Pseudomonas sp. 34K4 
prokMSA_id:77368 Pseudomonas sp. GS75 
prokMSA_id:77373 Pseudomonas sp. GS61 AF456217
prokMSA_id:77380 Pseudomonas sp. S23-11 
prokMSA_id:77396 Pseudomonas sp. 28R14a 
prokMSA_id:77402 Pseudomonas sp. GS49 
prokMSA_id:77405 Pseudomonas sp. S57-2 
prokMSA_id:77460 Pseudomonas sp. S67-2 
prokMSA_id:77463 Pseudomonas sp. 34t20 
prokMSA_id:77468 Pseudomonas sp. New10529 AF456214
prokMSA_id:77482 Pseudomonas sp. S67-3 
prokMSA_id:77522 Pseudomonas sp. S23-1 AF456230
prokMSA_id:77564 Pseudomonas sp. 10569 
prokMSA_id:81086 Pseudomonas syringae pv. tomato str. DC3000 section 20 of 21
prokMSA_id:81536 Pseudomonas syringae pv. tomato str. DC3000 section 4 of 21 
prokMSA_id:81803 Pseudomonas syringae pv. tomato str. DC3000 section 3 of 21 
prokMSA_id:81815 Pseudomonas veronii 
prokMSA_id:82411 Pseudomonas syringae pv. tomato str. DC3000 complete genome
prokMSA_id:82460 Pseudomonas syringae pv. tomato str. DC3000 section 13 of 21
prokMSA_id:82755 Pseudomonas syringae pv. pisi 
prokMSA_id:86377 Pseudomonas sp. R1enr 
prokMSA_id:91080 Pseudomonas sp. NJU001 complete 
prokMSA_id:91218 Pseudomonas sp. NJU002 complete 
prokMSA_id:91566 W5 AY345530
2.28.3.13.14.1.744 OTU 1 seq
prokMSA_id:31247 Pseudomonas sp. LAB-18 
2.28.3.13.14.1.745 OTU 2 seqs
prokMSA_id:8650 Pseudomonas Sag-1 str. Sag-1. AF098467
prokMSA_id:75129 Swine manure 37-8 
2.28.3.13.14.1.746 OTU 1 seq
prokMSA_id:38918 Q3-6C19 
2.28.3.13.14.1.747 OTU 1 seq
prokMSA_id:62407 gamma clone FTL244 
2.28.3.13.14.1.748 OTU 1 seq
prokMSA_id:78852 Pseudomonas viridiflava strain CECT 458 
2.28.3.13.14.1.749 OTU 2 seqs
prokMSA_id:30768 Pseudomonas putida strain:P-5
prokMSA_id:77437 Symbiont LP2 of Lyrodus pedicellatus AY150184
2.28.3.13.14.1.750 OTU 1 seq
prokMSA_id:76514 Pseudomonas sp. BHP7-11 
2.28.3.13.14.1.751 OTU 1 seq
prokMSA_id:56231 Pseudomonas sp. SMCC B0631 
2.28.3.13.14.1.752 OTU 1 seq
prokMSA_id:75962 Pseudomonas sp. STB17 
2.28.3.13.14.1.753 OTU 1 seq
prokMSA_id:85772 Pseudomonas sp. WG22#2 
2.28.3.13.14.1.754 OTU 1 seq
prokMSA_id:60549 Polyhydroxyalkanoate synthase and encoding the enzyme
2.28.3.13.14.1.755 OTU 1 seq
prokMSA_id:78951 Pseudomonas viridiflava strain LPPA 84 
2.28.3.13.14.1.756 OTU 1 seq
prokMSA_id:89393 Pseudomonas sp
2.28.3.13.14.1.757 OTU 1 seq
prokMSA_id:93278 Pseudomonas sp. An7 isolate An7
2.28.3.13.14.1.758 OTU 1 seq
prokMSA_id:93608 Pseudomonas sp. An23 isolate An23
2.28.3.13.14.1.759 OTU 1 seq
prokMSA_id:83528 Pseudomonas sp. 4/11GCS3#e 
2.28.3.13.14.1.760 OTU 1 seq
prokMSA_id:8621 Pseudomonas putida ATCC 11250
2.28.3.13.14.1.761 OTU 1 seq
prokMSA_id:92010 Pseudomonas sp
2.28.3.13.14.2 PS.TOLAASII_SUBGROUP 47 seqs
2.28.3.13.14.2.762 OTU 2 seqs
prokMSA_id:79601 Pseudomonas meridiana strain CMS 38T
prokMSA_id:85813 Pseudomonas sp. WG7#1 
2.28.3.13.14.2.763 OTU 3 seqs
prokMSA_id:16839 beta clone 8-11 AF351237
prokMSA_id:17958 gamma Arctic96B-9 
prokMSA_id:93286 beta clone JG36-GS-54
2.28.3.13.14.2.764 OTU 1 seq
prokMSA_id:19517 sheep mite Welshpool 1 
2.28.3.13.14.2.765 OTU 1 seq
prokMSA_id:17947 gamma hs2_55 
2.28.3.13.14.2.766 OTU 1 seq
prokMSA_id:62389 gamma clone FTLpost17 
2.28.3.13.14.2.767 OTU 13 seqs
prokMSA_id:8674 Pseudomonas PsI str. PsI
prokMSA_id:8694 Pseudomonas Cam-1 str. Cam-1. AF098464
prokMSA_id:21401 Pseudomonas putida strain Biotype A
prokMSA_id:33787 Pseudomonas sp. strain FAIR/BE/F/GH37
prokMSA_id:37559 sheep mite Welshpool 46 
prokMSA_id:37877 Pseudomonas putida strain ATCC 17390 
prokMSA_id:48560 Pseudomonas veronii strain:INA06
prokMSA_id:62341 Pseudomonas cremoricoloranta strain:IAM 1541T
prokMSA_id:62875 Pseudomonas rhodesiae isolate PF1
prokMSA_id:70736 Pseudomonas sp. strain FAIR/BE/F/GH39 AJ297354
prokMSA_id:78891 Pseudomonas sp. isolate 6i70 AY177775
prokMSA_id:80105 Pseudomonas sp. DY-A 
prokMSA_id:95371 gamma clone NE79 AJ575718
2.28.3.13.14.2.768 OTU 1 seq
prokMSA_id:8701 Pseudomonas borealis str. MA342
2.28.3.13.14.2.769 OTU 1 seq
prokMSA_id:8705 str. 4-5.l
2.28.3.13.14.2.770 OTU 1 seq
prokMSA_id:8712 clone ACE-4
2.28.3.13.14.2.771 OTU 1 seq
prokMSA_id:90145 Pseudomonas sp. operon rrnB 
2.28.3.13.14.2.772 OTU 6 seqs
prokMSA_id:21505 Pseudomonas cellulosa 
prokMSA_id:81097 Glaciecola sp. ANT9218 
prokMSA_id:81210 Glaciecola sp. ANT9142 
prokMSA_id:81369 Glaciecola sp. ANT9061 
prokMSA_id:81795 Glaciecola sp. ANT9154 AY167287
prokMSA_id:82405 Glaciecola sp. ANT9055 
2.28.3.13.14.2.773 OTU 1 seq
prokMSA_id:62415 gamma clone FTL213 
2.28.3.13.14.2.774 OTU 1 seq
prokMSA_id:93563 Pseudomonas sp. An20 isolate An20
2.28.3.13.14.2.775 OTU 2 seqs
prokMSA_id:72676 Glacial ice M3C4.1K-B34 AF479375
prokMSA_id:97875 Glacial ice MS-T3-04 
2.28.3.13.14.2.776 OTU 1 seq
prokMSA_id:79157 Pseudomonas antarctica strain CMS 35T
2.28.3.13.14.2.777 OTU 1 seq
prokMSA_id:34018 sheep mite Llangefni 4 
2.28.3.13.14.2.778 OTU 1 seq
prokMSA_id:16465 Pseudomonas fluorescens strain Biotype C
2.28.3.13.14.2.779 OTU 1 seq
prokMSA_id:32814 KF/GS-JG36-13 
2.28.3.13.14.2.780 OTU 1 seq
prokMSA_id:34487 sheep mite Welshpool 13 
2.28.3.13.14.2.781 OTU 1 seq
prokMSA_id:51827 Arthrobacter ramosus 
2.28.3.13.14.2.782 OTU 1 seq
prokMSA_id:53457 Pseudomonas sp. ML-120 
2.28.3.13.14.2.783 OTU 1 seq
prokMSA_id:82913 Pseudomonas sp. WE7#2b 
2.28.3.13.14.2.784 OTU 1 seq
prokMSA_id:50502 AT425_EubG1 
2.28.3.13.14.2.785 OTU 1 seq
prokMSA_id:8675 Pseudomonas PsH str. PsH
2.28.3.13.14.2.786 OTU 1 seq
prokMSA_id:16564 ECS31 
2.28.3.13.14.2.787 OTU 1 seq
prokMSA_id:59779 clone BB2_186 
2.28.3.13.14.7 PS.TAETROLENS_SUBGROUP 1 seq
2.28.3.13.14.7.788 OTU 1 seq
prokMSA_id:89274 Pseudomonas syringae isolate Lz4W
2.28.3.13.14.9 PS.AZOTOFORMANS_SUBGROUP 28 seqs
2.28.3.13.14.9.789 OTU 1 seq
prokMSA_id:94747 gamma- clone S15D-MN16
2.28.3.13.14.9.790 OTU 1 seq
prokMSA_id:79709 Arctic sea ice ARK10061 
2.28.3.13.14.9.791 OTU 25 seqs
prokMSA_id:8776 unnamed organism
prokMSA_id:19748 Pseudomonas tolaasii strain NCPPB 1116 
prokMSA_id:23419 Pseudomonas sp. 4N4-1 
prokMSA_id:26064 Pseudomonas sp. NZ059 AY014812
prokMSA_id:31959 Pseudomonas sp. SCD-14b 
prokMSA_id:32794 Pseudomonas sp. NZ007 
prokMSA_id:33806 Pseudomonas tolaasii strain NZ027 AF320994
prokMSA_id:34824 Pseudomonas tolaasii strain NCPPB 2193 AF320989
prokMSA_id:37815 Pseudomonas gingeri strain NCPPB 3146 
prokMSA_id:40472 Pseudomonas sp. NZ101 
prokMSA_id:43326 Pseudomonas sp. NZ052 
prokMSA_id:66299 Pseudomonas fluorescens LCSA0TU1 AF506040
prokMSA_id:70213 Pseudomonas sp. NZ122 AY014828
prokMSA_id:70601 Pseudomonas sp. NZ066 AF388209
prokMSA_id:70756 Pseudomonas chlororaphis isolate ICMP 13610; NRRL B-1576 AJ3
prokMSA_id:72973 Pseudomonas reactans AF320987
prokMSA_id:73648 Pseudomonas sp. NZ043 AY014809
prokMSA_id:88404 Pseudomonas putida 
prokMSA_id:88541 Pseudomonas sp. AZ22R3 
prokMSA_id:88809 Pseudomonas sp. AZ22L5 
prokMSA_id:89476 Pseudomonas sp. AZ22R9 AY308054
prokMSA_id:89654 Pseudomonas sp. AZ18L2 
prokMSA_id:89735 Pseudomonas sp. AZ22R2 
prokMSA_id:90660 Pseudomonas sp. AZ18R5 AY308045
prokMSA_id:97328 Pseudomonas sp. NAB2 
2.28.3.13.14.9.792 OTU 1 seq
prokMSA_id:61816 gamma clone CLs104 
2.28.3.13.15 PS.AGARICI_SUBGROUP 6 seqs
2.28.3.13.15.793 OTU 4 seqs
prokMSA_id:16611 Pseudomonas sp. SV3 
prokMSA_id:33387 Pseudomonas sp. SV23 
prokMSA_id:51918 alpha SB-2000 
prokMSA_id:78485 Pseudomonas sp. K22 
2.28.3.13.15.794 OTU 1 seq
prokMSA_id:32635 Pseudomonas corrugata SB4 
2.28.3.13.15.795 OTU 1 seq
prokMSA_id:97185 gamma clone SW28
2.28.3.16 MRB.HYDROCARBONOCLASTICUS_GROUP 9 seqs
2.28.3.16.796 OTU 3 seqs
prokMSA_id:8800 Marinobacter sp. str. IC022
prokMSA_id:8813 Marinobacter hydrocarbonoclasticus str. 17 ATCC 49840 . X670
prokMSA_id:80672 clone ARKCH2Br2-12 
2.28.3.16.797 OTU 3 seqs
prokMSA_id:8190 Neptunomonas naphthovorans str. NAG-2N-126
prokMSA_id:79238 Gamma UMB3A 
prokMSA_id:80231 Arctic sea ice associated ARK10148 
2.28.3.16.798 OTU 2 seqs
prokMSA_id:30177 clone C12-36 
prokMSA_id:59259 Marinobacter sp. 2Asq64 strain 2Asq64 AJ439500
2.28.3.16.799 OTU 1 seq
prokMSA_id:88805 Marinobacter sp. clone MBAE14
2.28.3.18 COLWELLIA_GROUP 63 seqs
2.28.3.18.800 OTU 1 seq
prokMSA_id:8864 Pele's Vents clone PVB_54
2.28.3.18.801 OTU 36 seqs
prokMSA_id:8232 Fundibacter jadensis str. T9
prokMSA_id:8799 Flectobacillus sp. str. S36-Wgv1. U14584
prokMSA_id:8807 Marinobacter aquaeolei str. VT8
prokMSA_id:8815 Marinobacter hydrocarbonoclasticus str. 179 ATCC 27132
prokMSA_id:8816 Marinobacter hydrocarbonoclasticus str. 179 ATCC 27132. AB02
prokMSA_id:8817 Marinobacter hydrocarbonoclasticus
prokMSA_id:8818 Marinobacter CAB str. CAB
prokMSA_id:16850 Alcanivorax sp. Haw1 
prokMSA_id:17943 gamma Arctic95B-15 
prokMSA_id:22649 gamma 4%N-6d-95 
prokMSA_id:23703 Alcanivorax sp. Abu-1 
prokMSA_id:24418 Alcanivorax sp. TE-9 
prokMSA_id:27287 clone C12-35 
prokMSA_id:28452 Alcanivorax sp. K3-3 
prokMSA_id:32122 Alcanivorax sp. I4 
prokMSA_id:34163 Alcanivorax sp. Oha-1 
prokMSA_id:40847 gamma Arctic96A-12 AF354610
prokMSA_id:45418 Marinobacter sp. 2sq31 strain 2sq31 AJ429499
prokMSA_id:47998 Alcanivorax sp. OM-2 
prokMSA_id:66625 gamma clone 1-34 AY094502
prokMSA_id:66955 Marinobacter sp. SBS 
prokMSA_id:72421 Alcanivorax sp. PR-1 AB053132
prokMSA_id:74609 gamma 4%N-6d-109 
prokMSA_id:75064 Marinobacter sp. R2 
prokMSA_id:78569 Marinobacter excelentus strain KMM 3809 AY180101
prokMSA_id:79688 Arctic sea ice ARK10228 
prokMSA_id:79868 Arctic sea ice ARK10251 AF468402
prokMSA_id:80080 Marinobacter sp. HB7 
prokMSA_id:80459 Arctic sea ice ARK10244 
prokMSA_id:81583 Marinobacter sp. ANT8277 
prokMSA_id:82613 Alteromonadaceae 
prokMSA_id:82935 Antarctic R-9035 strain R-9035 AJ441002
prokMSA_id:88713 Alcanivorax sp. clone MBAE17
prokMSA_id:89535 Alcanivorax sp. clone MBAE47
prokMSA_id:89993 Alcanivorax sp. clone MBMPE48
prokMSA_id:96356 clone F1 
2.28.3.18.802 OTU 4 seqs
prokMSA_id:8838 Colwellia -like sp. IC169 str. IC169
prokMSA_id:80357 clone ARKICE-3 
prokMSA_id:80484 clone ARKICE-53 
prokMSA_id:82145 Roseobacter sp. ANT8230 
2.28.3.18.803 OTU 19 seqs
prokMSA_id:7696 Thiomicrospira chilensis str. Ch-1
prokMSA_id:8181 str. BD1-7
prokMSA_id:8187 Oceanospirillum beijerinckii subsp. beijerinckii ATCC 12754 
prokMSA_id:8836 Colwellia psychroerythrea ATCC 27364
prokMSA_id:8850 Colwellia rossensis str. S51-Wgv1. U14581
prokMSA_id:16486 gamma MERTZ_2CM_185 
prokMSA_id:26916 gamma clone CD12A8 AF441967
prokMSA_id:53763 gamma clone MPD-13 
prokMSA_id:66627 gamma clone 1-46 AY094497
prokMSA_id:81641 Colwellia rossensis strain ANT9250 
prokMSA_id:81749 Colwellia rossensis strain ANT9203 AY167298
prokMSA_id:81807 Colwellia rossensis strain ANT9279 
prokMSA_id:82290 Colwellia rossensis strain ANT9247 
prokMSA_id:82300 Colwellia rossensis strain ANT8283 
prokMSA_id:95362 clone B98 AY375079
prokMSA_id:95637 clone B91 
prokMSA_id:95795 clone B182 
prokMSA_id:97018 clone B142 
prokMSA_id:97399 clone B136 
2.28.3.18.804 OTU 2 seqs
prokMSA_id:8854 marine snow associated clone agg53. L10950
prokMSA_id:74479 Colwellia sp. Ant5-9 
2.28.3.18.805 OTU 1 seq
prokMSA_id:95240 clone D7 
2.28.3.19 ALTM.MACLEODII_GROUP 13 seqs
2.28.3.19.806 OTU 8 seqs
prokMSA_id:31197 Marine ATAM173a_5 
prokMSA_id:46123 Thalassomonas sp. MERTZ_0CM_55 
prokMSA_id:80881 Arctic sea ice ARK10218 
prokMSA_id:81075 Glaciecola sp. ANT9183b 
prokMSA_id:81511 Glaciecola sp. ANT9094 AY167280
prokMSA_id:81573 Glaciecola sp. ANT9148 
prokMSA_id:81831 Glaciecola sp. ANT9029 
prokMSA_id:86032 Antarctic R-11381 strain R-11381
2.28.3.19.807 OTU 4 seqs
prokMSA_id:39858 Arctic seawater R7215 
prokMSA_id:65357 Glaciecola sp. KMM 241 strain KMM 241
prokMSA_id:88454 Glaciecola polaris strain strain LMG 21854
prokMSA_id:89023 Glaciecola gelidimarina strain LMG 21855 AJ548479
2.28.3.19.808 OTU 1 seq
prokMSA_id:79998 Arctic sea ice ARK10128 
2.28.3.20 PSEUDOALTEROMONAS_GROUP 184 seqs
2.28.3.20.1 PAL.HALOPLANKTIS_SUBGROUP 137 seqs
2.28.3.20.1.809 OTU 137 seqs
prokMSA_id:8905 Pseudoalteromonas nigrifaciens NCIMB 8614 . X82146
prokMSA_id:8906 Pseudoalteromonas sp. str. SW29. U85862
prokMSA_id:8907 Pseudoalteromonas gracilis str. B9
prokMSA_id:8909 Pseudoalteromonas sp. str. FU0605
prokMSA_id:8910 str. H120
prokMSA_id:8912 Pseudoalteromonas atlantica IAM 12927 . X82134
prokMSA_id:8913 Pseudoalteromonas sp. str. MB8-11
prokMSA_id:8914 Pseudoalteromonas ANG.ro2 str. ANG.strain ro2. AF022407
prokMSA_id:8916 str. 12-13. AF069666
prokMSA_id:8918 Pseudoalteromonas haloplanktis subsp. tetraodonis str. GFC I
prokMSA_id:8919 Pseudoalteromonas sp. str. AR0307
prokMSA_id:8921 Pseudoalteromonas RE10F/2 str. RE10F/2. AF118018
prokMSA_id:8925 Alteromonas elyakovii str. 40MC KMM 162 . AF082562
prokMSA_id:8926 Pseudoalteromonas sp. str. IC006
prokMSA_id:8927 Pseudoalteromonas sp. str. MB6-03
prokMSA_id:8928 Pseudoalteromonas sp. str. MB8-02
prokMSA_id:8929 Pseudoalteromonas sp. str. IC013. U85859
prokMSA_id:8930 Pseudoalteromonas sp. str. MB6-05
prokMSA_id:8932 Pseudoalteromonas elyakovii str. O22. AF116188
prokMSA_id:8934 Pseudoalteromonas ER72M2
prokMSA_id:8935 Pseudoalteromonas haloplanktis subsp. haloplanktis ATCC 1439
prokMSA_id:8939 Moritella marina str. MP-1 ATCC 15381 . X74709
prokMSA_id:8940 Pseudoalteromonas undina NCIMB 2128 . X82140
prokMSA_id:8942 Pseudoalteromonas espejiana NCIMB 2127 . X82143
prokMSA_id:8944 Pseudoalteromonas antarctica str. NF3 CECT 4664
prokMSA_id:8945 Alteromonas fuliginea KMM 216 . AF082563
prokMSA_id:8946 Pseudoalteromonas antarctica str. N-1. AF045560
prokMSA_id:8947 Alteromonas distincta KMM 638 . AF082564
prokMSA_id:16478 Pseudoalteromonas sp. LT13 complete 
prokMSA_id:16663 gamma MERTZ_21CM_214 
prokMSA_id:17084 Pseudoalteromonas SIC.8123 
prokMSA_id:17488 Pseudoalteromonas SIC.71302 
prokMSA_id:17585 Pseudoalteromonas elyakovii AB000389
prokMSA_id:17633 Pseudoalteromonas sp. PF30-23 
prokMSA_id:18568 Pseudoalteromonas sp. P-1P41 AF295035
prokMSA_id:18661 Pseudoalteromonas atlantica 
prokMSA_id:20215 Pseudoalteromonas sp. AS-41 
prokMSA_id:20578 Pseudoalteromonas sp. JLN-U1 strain X86466
prokMSA_id:21565 Pseudoalteromonas sp. MERTZ_0CM_212 
prokMSA_id:21879 Pseudoalteromonas sp. KMM 520 
prokMSA_id:22539 Pseudoalteromonas sp. JLN-T413 strain X86464
prokMSA_id:22902 Alteromonas distincta 
prokMSA_id:23058 Pseudoalteromonas sp. EH-2-1 
prokMSA_id:23413 Pseudoalteromonas sp. DC1 complete 
prokMSA_id:23639 Pseudoalteromonas antarctica 
prokMSA_id:24834 gamma 400m-FREE-8 
prokMSA_id:27905 Marine gamma BB2AT2 
prokMSA_id:30293 gamma Arctic96AD-24 
prokMSA_id:30396 Marine Tw-5 
prokMSA_id:31435 Pseudoalteromonas sp. JLN-T418 strain X86465
prokMSA_id:31520 Pseudoalteromonas haloplanktis subsp. tetraodonis strain IAM
prokMSA_id:32584 Pseudoalteromonas sp. SUR560 
prokMSA_id:33435 Marine BB2AT2 
prokMSA_id:33697 Pseudoalteromonas sp. 22b 
prokMSA_id:33742 Pseudoalteromonas gracilis 
prokMSA_id:35558 Pseudoalteromonas sp. TE1-1 strain TE1-1
prokMSA_id:36441 Marine Tw-4 
prokMSA_id:36812 Pseudoalteromonas sp. Edeep-1 
prokMSA_id:37218 Pseudoalteromonas espejiana strain kpa58 
prokMSA_id:37299 Marine Tw-7 
prokMSA_id:37455 Pseudoalteromonas issachenkonii strain KMM 3558 AF316142
prokMSA_id:37970 Alteromonas sp. strain NIBH P3M26 complete AB016268
prokMSA_id:39843 gamma Arctic96AD-16 
prokMSA_id:39984 Pseudoalteromonas haloplanktis subsp. tetraodonis strain KMM
prokMSA_id:40549 Alteromonas sp. MS23 
prokMSA_id:40554 C16S 
prokMSA_id:41181 Pseudoalteromonas sp. SE1-2red strain SE1-2red AJ314845
prokMSA_id:41476 gamma Arctic96BD-24 
prokMSA_id:42494 Pseudoalteromonas sp. SE1-2ox strain SE1-2ox
prokMSA_id:42828 Pseudoalteromonas porphyrae 
prokMSA_id:42883 Pseudoalteromonas sp. JLN-A238 strain X86463
prokMSA_id:43095 Marine Tw-10 AY028205
prokMSA_id:43190 x3 AF293975
prokMSA_id:43301 Pseudoalteromonas sp. AS-28 
prokMSA_id:43347 Vestimentiferan symbiont TW-4 AB042419
prokMSA_id:45332 Pseudoalteromonas sp. JLN-A013 strain X86462
prokMSA_id:46309 Pseudoalteromonas sp. KMM 3548 
prokMSA_id:46753 Pseudoalteromonas agarovorans strain KMM 255
prokMSA_id:47224 Pseudoalteromonas kps58rc 
prokMSA_id:47563 gamma 400m-FREE-39 
prokMSA_id:47863 gamma MERTZ_21CM_219 
prokMSA_id:50106 Pseudoalteromonas sp. KM-Y92-001 
prokMSA_id:50422 Alteromonas sp. KT0903 
prokMSA_id:51268 Pseudoalteromonas sp. AS-27 
prokMSA_id:51317 Pseudoalteromonas atlantica 
prokMSA_id:52182 Alteromonas sp. strain NIBH P3M26 complete AB016267
prokMSA_id:52453 Pseudoalteromonas sp. TE2-2 strain TE2-2 AJ314842
prokMSA_id:52879 Pseudoalteromonas issachenkonii strain KMM 3549 
prokMSA_id:54098 Psychrophilic marine PS39 complete and -23S intergenic space
prokMSA_id:54633 Psychrophilic marine PS10 complete and -23S intergenic space
prokMSA_id:54983 Psychrophilic sea water PS16 complete and -23S intergenic sp
prokMSA_id:59526 Pseudoalteromonas sp. KMM 3635 strain KMM 3635
prokMSA_id:60988 Pseudoalteromonas citrea strain CIP 105339 AF529062
prokMSA_id:61120 Pseudoalteromonas sp. MGP-34 
prokMSA_id:61131 Pseudoalteromonas sp. MGP-2 
prokMSA_id:70360 Abyssal strain AIII3* AF254110
prokMSA_id:71344 Marine ATAM173a_36 AF359543
prokMSA_id:71431 Pseudoalteromonas sp. V4.BE.07 AJ244748
prokMSA_id:71998 Polar sea R7852 AJ295712
prokMSA_id:72158 Polar sea R7076 AJ295713
prokMSA_id:72908 Pseudoalteromonas sp. V12.BF.11 AJ244739
prokMSA_id:73464 gamma strain OS-137 AJ311965
prokMSA_id:73474 Pseudoalteromonas sp. Ideep-1 AB055797
prokMSA_id:74244 Marine Tw-8 AY028203
prokMSA_id:75690 Pseudoalteromonas sp. AC-205 
prokMSA_id:77092 Pseudoalteromonas sp. AC-144 
prokMSA_id:77391 Psychrophilic marine WP-1 
prokMSA_id:79264 Gamma UMB10F 
prokMSA_id:79319 Gamma UMB11F 
prokMSA_id:79339 Gamma UMB20C AF505745
prokMSA_id:79398 Pseudoalteromonas sp. MMM18 AY187028
prokMSA_id:80048 Pseudoalteromonas atlantica AB100883
prokMSA_id:81103 Pseudomonas sp. ANT9287 
prokMSA_id:81950 Pseudoalteromonas sp. ANT9388 
prokMSA_id:82882 Pseudoalteromonas sp. E33 
prokMSA_id:83200 Pseudoalteromonas sp. CAM25 AY243365
prokMSA_id:83202 Pseudoalteromonas sp. FRA000019 AB106205
prokMSA_id:83467 Pseudoalteromonas sp. R46 
prokMSA_id:83809 Pseudoalteromonas sp. FRA000005 AB106188
prokMSA_id:84194 Pseudoalteromonas sp. FRA000017 
prokMSA_id:84561 Pseudoalteromonas sp. R30 
prokMSA_id:84567 Pseudoalteromonas sp. FRA000006 
prokMSA_id:84883 Pseudoalteromonas sp. FRA000014 
prokMSA_id:84933 Pseudoalteromonas sp. E48 
prokMSA_id:85191 Pseudoalteromonas sp. 'turbot' 
prokMSA_id:85564 Pseudoalteromonas sp. E29 AF539766
prokMSA_id:85898 Pseudoalteromonas sp. E30 AF539771
prokMSA_id:85933 Pseudoalteromonas sp. RE2-12b 
prokMSA_id:86092 Pseudoalteromonas sp. E47 
prokMSA_id:86352 Pseudoalteromonas sp. CAM36 
prokMSA_id:89856 Pseudoalteromonas sp. SM9913 complete 
prokMSA_id:91170 K2-82 
prokMSA_id:92918 gamma clone PLY-P3-31 AY354848
prokMSA_id:95906 Pseudoalteromonas sp. KMM 3562 AY387858
prokMSA_id:96499 Pseudoalteromonas sp. 1-1-10-2 
prokMSA_id:97227 Pseudoalteromonas sp. 4-1-6-1 
prokMSA_id:97790 Pseudoalteromonas sp. 2-3-6-2 
2.28.3.20.4 MRT.MARINA_SUBGROUP 12 seqs
2.28.3.20.4.810 OTU 1 seq
prokMSA_id:9020 barophile WHB 46 clone 1
2.28.3.20.4.811 OTU 2 seqs
prokMSA_id:8989 Moritella DB21MT-5 str. DB21MT-5
prokMSA_id:8991 Moritella Moritella sp. str. 20.c. AB013823
2.28.3.20.4.812 OTU 2 seqs
prokMSA_id:96373 Moritella sp. 2-2-2-1 
prokMSA_id:97062 Moritella sp. 1-2-8-1 
2.28.3.20.4.813 OTU 7 seqs
prokMSA_id:9012 Shewanella benthica str. DB21MT-2
prokMSA_id:9025 Shewanella gelidimarina str. ICP6 ACAM 456
prokMSA_id:9037 str. KMG427. AF187080
prokMSA_id:32772 Shewanella sp. MERTZ_0CM_409 
prokMSA_id:89280 Shewanella sp. clone MBAE53
prokMSA_id:90386 Shewanella sp. clone MBAE30
prokMSA_id:90746 Shewanella sp. clone MBAE37
2.28.3.20.5 SHE.PUTREFACIENS_SUBGROUP 35 seqs
2.28.3.20.5.814 OTU 34 seqs
prokMSA_id:9058 Shewanella arsenana str. arsenana
prokMSA_id:9068 Shewanella baltica NCTC 10735
prokMSA_id:9074 Shewanella MR-8 str. MR-8
prokMSA_id:9075 Shewanella baltica str. OS155
prokMSA_id:9076 Shewanella baltica str. OS195
prokMSA_id:9079 Shewanella massilia. AJ006084
prokMSA_id:9094 Shewanella putrefaciens LMG 2268 . X81623
prokMSA_id:9097 Shewanella algae str. BrY. X81621
prokMSA_id:9105 clone Aspo5
prokMSA_id:9110 Shewanella ML-S3 str. ML-S3. AF140017
prokMSA_id:9111 Shewanella ML-S2 str. ML-S2
prokMSA_id:9113 Shewanella oneidensis str. MR-1. AF005251
prokMSA_id:27166 Shewanella baltica clone GR-WP39-25
prokMSA_id:32956 Shewanella sp. CL256/73 
prokMSA_id:33048 Shewanella sp. SIC1 
prokMSA_id:33931 Shewanella oneidensis 
prokMSA_id:37367 Shewanella sp. 184 
prokMSA_id:51097 W3 18-1 
prokMSA_id:55466 Shewanella oneidensis MR-1 section 272 of 457 of the complet
prokMSA_id:57774 Shewanella oneidensis MR-1 section 431 of 457 of the complet
prokMSA_id:57775 Shewanella oneidensis MR-1 section 455 of 457 of the complet
prokMSA_id:57777 Shewanella oneidensis MR-1 section 430 of 457 of the complet
prokMSA_id:57778 Shewanella oneidensis MR-1 section 343 of 457 of the complet
prokMSA_id:57779 Shewanella oneidensis MR-1 section 402 of 457 of the complet
prokMSA_id:57780 Shewanella oneidensis MR-1 section 24 of 457 of the complete
prokMSA_id:57781 Shewanella oneidensis MR-1 section 19 of 457 of the complete
prokMSA_id:57784 Shewanella oneidensis MR-1 section 4 of 457 of the complete 
prokMSA_id:70300 Shewanella putrefaciens IR-1 complete AF170300
prokMSA_id:70682 S.putrefaciens X81623
prokMSA_id:70808 Shewanella putrefaciens AB057660
prokMSA_id:81492 Shewanella sp. ANT9071 AY167276
prokMSA_id:86623 Antarctic R-12605 strain R-12605
prokMSA_id:89905 Shewanella putrefaciens 
prokMSA_id:93758 Shewanella sp. WW001 
2.28.3.20.5.815 OTU 1 seq
prokMSA_id:19844 clone CR99-35-02 
2.28.3.21 PSM.ANTARC_GROUP 21 seqs
2.28.3.21.816 OTU 21 seqs
prokMSA_id:9014 barophile WHB 46 clone 2
prokMSA_id:9115 str. 90-Pgv1. U14582
prokMSA_id:9116 str. IC052. U85848
prokMSA_id:9117 Psychromonas IC004 str. IC004. U85849
prokMSA_id:9118 Psychromonas 4-22 str. 4-22. AB023378
prokMSA_id:9119 str. 37. U73721
prokMSA_id:9120 str. 174. U73722
prokMSA_id:9121 Psychromonas antarctica str. star-1 DSM 10704
prokMSA_id:24214 Psychromonas sp. MERTZ_21CM_57 
prokMSA_id:25724 Psychromonas profunda 
prokMSA_id:32735 Marine Mst85 strain Mst85
prokMSA_id:36525 delta MERTZ_21CM_335 
prokMSA_id:38440 Psychromonas McMurdo.211 
prokMSA_id:38990 Psychromonas arctica complete 
prokMSA_id:39185 Psychromonas sp. Ant5-5 
prokMSA_id:47163 Marine psychrotrophic MK242 AB038034
prokMSA_id:71948 Alteromonas sp. KT1114 AF235108
prokMSA_id:72165 Alteromonas sp. KT1102 AF235123
prokMSA_id:73094 Marine psychrotrophic Mst37 strain Mst37 AJ308372
prokMSA_id:81267 Psychromonas sp. ANT9248 AY167306
prokMSA_id:81844 Psychromonas sp. ANT9282a AY167312
2.28.3.23 VIBRIO_GROUP 61 seqs
2.28.3.23.3 VIBRIO_SUBGROUP 34 seqs
2.28.3.23.3.3 V.SALMONICIDA_SUBGROUP 11 seqs
2.28.3.23.3.3.817 OTU 11 seqs
prokMSA_id:9278 Vibrio 2P44 str. 2P44. U57919
prokMSA_id:20390 Vibrio logei 
prokMSA_id:26431 Vibrio sp. ED4 AY035895
prokMSA_id:40343 Vibrio sp. Hdeep-1 
prokMSA_id:40425 Listonella anguillarum 
prokMSA_id:42870 4c 
prokMSA_id:47083 Vibrio splendidus strain B17 
prokMSA_id:73493 Vibrio sp. LT06 complete AF456336
prokMSA_id:73749 Vibrio sp. V4.BP.07 AJ244774
prokMSA_id:74170 Vibrio sp. Gdeep-1 AB055795
prokMSA_id:75372 Vibrio supersteus strain G3-29 
2.28.3.23.3.6 V.HARVEYI_SUBGROUP 23 seqs
2.28.3.23.3.6.818 OTU 8 seqs
prokMSA_id:9219 Vibrio campbellii str. 40 ATCC 25920 . X56575
prokMSA_id:9223 Vibrio alginolyticus CIP 70.65. X74691
prokMSA_id:9226 Vibrio alginolyticus str. XII-53 ATCC 17749 . X56576
prokMSA_id:9234 Vibrio alginolyticus str. XII-53 CIP 75.03. X74690
prokMSA_id:9235 Vibrio harveyi ATCC 14126 . X56578
prokMSA_id:9236 Vibrio harveyi ATCC 14126 . X56578
prokMSA_id:9243 Vibrio harveyi CIP 103192 . X74706
prokMSA_id:94344 Vibrio alginolyticus 
2.28.3.23.3.6.819 OTU 15 seqs
prokMSA_id:9229 Vibrio NAP-4 str. NAP-4
prokMSA_id:9279 Vibrio tapetis str. B1090 CECT 4600
prokMSA_id:24526 Vibrio sp. Ex25 
prokMSA_id:34170 Vibrio sp. NLEP97-1598 
prokMSA_id:36201 Vibrio parahaemolyticus clone F44 
prokMSA_id:45699 Vibrio sp. AB003 
prokMSA_id:47824 Vibrio parahaemolyticus clone Vp23 
prokMSA_id:48633 Vibrio parahaemolyticus clone Vp 27 
prokMSA_id:48726 Vibrio parahaemolyticus clone Vp16 
prokMSA_id:56540 Vibrio sp. Ex97 
prokMSA_id:68895 Vibrio penaeicida strain DSM 14398T
prokMSA_id:70325 Vibrio penaeicida strain LMG 19663T AJ437191
prokMSA_id:73398 Vibrio sp. NLEP97-1599 AF410779
prokMSA_id:84254 Vibrio sp. CJ11052 AF500207
prokMSA_id:91753 clone W1A-F10 
2.28.3.23.4 V.MEDITERRANEI_SUBGROUP 4 seqs
2.28.3.23.4.820 OTU 1 seq
prokMSA_id:40067 ECS24 
2.28.3.23.4.821 OTU 1 seq
prokMSA_id:9246 symbiont of Anomalops katoptron
2.28.3.23.4.822 OTU 1 seq
prokMSA_id:9249 symbiont of Kryptophanaron alfredi
2.28.3.23.4.823 OTU 1 seq
prokMSA_id:9250 symbiont of Photoblepharon steinetzi
2.28.3.23.5 V.SPLENDIDUS_SUBGROUP 23 seqs
2.28.3.23.5.824 OTU 2 seqs
prokMSA_id:51946 Marine gamma LHAT9 
prokMSA_id:74395 Vibrio sp. SYS6-01 strain SYS6-01 AJ414132
2.28.3.23.5.825 OTU 15 seqs
prokMSA_id:9170 Vibrio orientalis str. 717 CIP 102891 . X74719
prokMSA_id:9205 Vibrio campbellii str. 40 CIP 75.01 . X74692
prokMSA_id:23581 clone 249
prokMSA_id:26362 Alteromonas sp. KT0232 AF235125
prokMSA_id:26876 Vibrio sp. AS-32 
prokMSA_id:29344 Vibrio sp. BB4 
prokMSA_id:31661 Vibrio campbellii AY035896
prokMSA_id:37967 Marine Tw-2 
prokMSA_id:50883 Vibrio harveyi strain M4 
prokMSA_id:60045 Vibrio sp. R-14939 strain R-14939
prokMSA_id:72695 Vibrio sp. 98CJ11027 AF246980
prokMSA_id:72939 Vibrio trachuri strain LMG 19643 AJ312382
prokMSA_id:91619 K20 
prokMSA_id:93936 Vibrio sp. LMG 20370 strain LMG 20370 AJ345066
prokMSA_id:94006 Vibrio probioticus strain LMG 20362T AJ345063
2.28.3.23.5.826 OTU 5 seqs
prokMSA_id:9286 Vibrio scophthalmi str. A089 CECT 4638 . U46579
prokMSA_id:52051 Vibrio sp. 3d clone 3d7 
prokMSA_id:54302 Vibrio sp. 3d clone 3d8 
prokMSA_id:62643 Vibrio sp. No.6 
prokMSA_id:76451 Vibrio supersteus strain B2-3 
2.28.3.23.5.827 OTU 1 seq
prokMSA_id:28001 clone 253
2.28.3.24 AEROMONAS_GROUP 9 seqs
2.28.3.24.1 RUM.AMYLOPHILUS_SUBGROUP 5 seqs
2.28.3.24.1.828 OTU 3 seqs
prokMSA_id:9357 Succinivibrio dextrinosolvens DSM 3072
prokMSA_id:88112 rumen clone JRCG12 
prokMSA_id:88673 rumen clone JRCJ31 
2.28.3.24.1.829 OTU 2 seqs
prokMSA_id:9356 Anaerobiospirillum succiniciproducens str. S411 ATCC 29305 .
prokMSA_id:60771 Anaerobiospirillum sp. 3J102 
2.28.3.24.2 ARM.HYDROPHILA_SUBGROUP 4 seqs
2.28.3.24.2.830 OTU 2 seqs
prokMSA_id:36267 
prokMSA_id:79576 Pseudomonas sp. K23 
2.28.3.24.2.831 OTU 1 seq
prokMSA_id:81281 clone SA76 
2.28.3.24.2.832 OTU 1 seq
prokMSA_id:66205 Aeromonas sp. strain RR8
2.28.3.26 HAEMOPHILUS-PASTEURELLA_GROUP 141 seqs
2.28.3.26.4 PAS.BISGAARD_TAXON_13_SUBGROUP 40 seqs
2.28.3.26.4.833 OTU 8 seqs
prokMSA_id:9461 Pasteurella multocida str. W-9217 NCTC 10322 . M35018
prokMSA_id:9462 Pasteurella sp. str. Bisgaard Taxon 13. L06085
prokMSA_id:9576 Pasteurella sp. str. Bisgaard Taxon 8. L06083
prokMSA_id:9633 Haemophilus paraphrophilus str. Haywood K. Zinnemann ATCC 29
prokMSA_id:35255 Pasteurella multocida strain H129 AF176298
prokMSA_id:36498 Pasteurella multocida strain H117 
prokMSA_id:45954 Actinobacillus sp. CCUG 28015 AF224284
prokMSA_id:91684 Bisgaard taxon 26 biovar 1 AY172727
2.28.3.26.4.834 OTU 32 seqs
prokMSA_id:9457 Pasteurella sp. str. Bisgaard Taxon 14 CCUG 16499R. L06086
prokMSA_id:9458 Pasteurella sp. str. Bisgaard Taxon 14 CCUG 28027. L06087
prokMSA_id:9463 Pasteurella dagmatis ATCC 43325 . M75051
prokMSA_id:9510 Actinobacillus delphinicola str. M1063L NCTC 12871
prokMSA_id:9511 Pasteurella phocoenarum str. M1063U NCTC 12872
prokMSA_id:9542 Haemophilus ducreyi str. KC57 ATCC 27722. M75084
prokMSA_id:9543 Haemophilus ducreyi str. HD 35000 ATCC 33922. M75079
prokMSA_id:9544 Haemophilus ducreyi CIP 542 . M75078
prokMSA_id:9545 Haemophilus ducreyi CIP 542 . M63900
prokMSA_id:9555 Haemophilus haemoglobinophilus NCTC 1659 . M75064
prokMSA_id:9556 Haemophilus paragallinarum NCTC 11296 . M75057
prokMSA_id:17538 Haemophilus segnis 
prokMSA_id:18868 Pasteurella multocida strain PM2 
prokMSA_id:33152 Pasteurella salmonicida isolate 95A1
prokMSA_id:40556 of Pasteurella multocida
prokMSA_id:44396 Haemophilus parainfluenzae strain P1525 AJ290754
prokMSA_id:52835 Haemophilus parahaemolyticus strain NCTC 8479T AJ295746
prokMSA_id:53170 Bisgaard Taxon 17 complete AF024529
prokMSA_id:54767 Haemophilus segnis 
prokMSA_id:62471 Haemophilus ducreyi isolate Amsterdam 
prokMSA_id:62944 Pasteurella multocida subsp. tigris complete 
prokMSA_id:69985 Pasteurella pneumotropica AF224296
prokMSA_id:74655 Haemophilus parainfluenzae strain HK85
prokMSA_id:76576 gamma clone S15A-MN19
prokMSA_id:86047 clone ABLCf1 AF499896
prokMSA_id:88305 Haemophilus ducreyi strain 35000HP section 2 of 6 of the com
prokMSA_id:89152 Haemophilus ducreyi strain 35000HP section 3 of 6 of the com
prokMSA_id:89543 Haemophilus ducreyi strain 35000HP section 1 of 6 of the com
prokMSA_id:89812 Terrahaemophilus aromaticivorans 
prokMSA_id:89921 Haemophilus ducreyi 35000HP complete genome
prokMSA_id:90008 Haemophilus ducreyi strain 35000HP section 6 of 6 of the com
prokMSA_id:92231 Haemophilus sp. oral clone JM053 
2.28.3.26.9 PAS.ANATIS_SUBGROUP 2 seqs
2.28.3.26.9.835 OTU 2 seqs
prokMSA_id:42277 Salpingitia sp. Gerl.2740/89 
prokMSA_id:70689 Salpingitia sp. CCM 5975 AF228016
2.28.3.26.10 H.INFLUENZAE_SUBGROUP 4 seqs
2.28.3.26.10.836 OTU 4 seqs
prokMSA_id:9469 Pasteurella sp. str. Bisgaard Taxon 3. L06079
prokMSA_id:9470 Pasteurella sp. str. Bisgaard Taxon 2. L06078
prokMSA_id:19891 Haemophilus influenzae ATCC 8142 
prokMSA_id:44852 Haemophilus influenzae ATCC 9833 
2.28.3.26.11 H.PARASUIS_SUBGROUP 10 seqs
2.28.3.26.11.837 OTU 1 seq
prokMSA_id:32352 Bisgaardia hudsonenesis strain 98-D-690B
2.28.3.26.11.838 OTU 9 seqs
prokMSA_id:9514 Actinobacillus porcinus str. NM319 . U65583
prokMSA_id:9517 Actinobacillus minor str. NM305 . U65582
prokMSA_id:9538 Haemophilus sp. str. 202 sub_species minor group. M75077
prokMSA_id:9549 Pasteurella bettyae CCUG 2042 . L06088
prokMSA_id:18347 clone p-1338-a2 
prokMSA_id:21372 clone p-4752-2Wb2 
prokMSA_id:50727 clone p-2130-s959-2 
prokMSA_id:70580 clone p-4307-4Wa3 AF371856
prokMSA_id:74378 Haemophilus felis AF224292
2.28.3.26.17 ACB.PLEUROPNEUMONIAE_SUBGROUP 82 seqs
2.28.3.26.17.839 OTU 82 seqs
prokMSA_id:9459 Pasteurella testudinis CCUG 19802 . L06090
prokMSA_id:9472 Haemophilus haemolyticus NCTC 10659 . M75045
prokMSA_id:9478 Pasteurella pneumotropica str. CNP 160
prokMSA_id:9485 CCUG 28030. AF024527
prokMSA_id:9518 Haemophilus parasuis NCTC 4557 . M75065
prokMSA_id:9519 Haemophilus parasuis str. No.131
prokMSA_id:9520 Haemophilus parasuis str. 188
prokMSA_id:9521 Haemophilus parasuis str. 271
prokMSA_id:9522 Haemophilus parasuis str. 327
prokMSA_id:9523 Haemophilus parasuis str. 427
prokMSA_id:9524 Haemophilus parasuis str. No.4 MAFF 911032
prokMSA_id:9525 Haemophilus parasuis str. 545
prokMSA_id:9526 Haemophilus parasuis str. 550
prokMSA_id:9527 Haemophilus parasuis str. 635
prokMSA_id:9528 Haemophilus parasuis str. 82
prokMSA_id:9529 Haemophilus parasuis str. SW114 MAFF 911035
prokMSA_id:9530 Haemophilus parasuis str. SW124 MAFF 911037
prokMSA_id:9531 Haemophilus parasuis str. SW140 MAFF 911034
prokMSA_id:9532 Haemophilus parasuis str. Nagasaki. M75066
prokMSA_id:9541 Haemophilus paracuniculus ATCC 29986 . M75061
prokMSA_id:9546 Lonepinella koalarum str. LX-1 ACM 3666 . Y17189
prokMSA_id:9547 Lonepinella koalarum ACM 3896. Y17190
prokMSA_id:9548 Lonepinella koalarum ACM 3496. Y17191
prokMSA_id:9551 Mannheimia haemolytica NCTC 10624. M75063
prokMSA_id:9552 Pasteurella trehalosi str. T3 PH 68. U57073
prokMSA_id:9553 Pasteurella trehalosi str. T10 PH 252
prokMSA_id:9554 Pasteurella trehalosi str. T4 PH 246. U57075
prokMSA_id:9557 Haemophilus sp. M75056
prokMSA_id:9559 Pasteurella gallinarum NCTC 11188 . M75059
prokMSA_id:9560 Pasteurella volantium NCTC 3438 . M75070
prokMSA_id:9564 Pasteurella sp. str. Bisgaard Taxon 5. L06080
prokMSA_id:9565 Pasteurella sp. str. Bisgaard Taxon 9. L06084
prokMSA_id:9568 Actinobacillus pleuropneumoniae str. Shope4074
prokMSA_id:9570 Actinobacillus lignieresii str. CM 2 P.H. Martin ATCC 19393.
prokMSA_id:9572 Actinobacillus equuli NCTC 8529 . M75072
prokMSA_id:9574 Actinobacillus ureae str. Henrikson 3520/59 T ATCC 25976 . M
prokMSA_id:9575 Haemophilus parahaemolyticus NCTC 8479 . M75073
prokMSA_id:9579 Actinobacillus lignieresii NCTC 4189 . M75068
prokMSA_id:9580 Actinobacillus pleuropneumoniae str. S1536
prokMSA_id:9582 Actinobacillus pleuropneumoniae str. 634
prokMSA_id:9583 Actinobacillus pleuropneumoniae str. 658
prokMSA_id:9584 Actinobacillus pleuropneumoniae str. 585 1565 7949 11498 761
prokMSA_id:9585 Actinobacillus capsulatus CCUG 19799. M75067
prokMSA_id:9586 Actinobacillus capsulatus str. 63595
prokMSA_id:9588 Actinobacillus pleuropneumoniae str. Hi-1
prokMSA_id:9596 Mannheimia haemolytica str. PH2PH8; serotype A1
prokMSA_id:9598 Mannheimia glucosida str. UT18 CCUG 38458. AF053890
prokMSA_id:9600 Mannheimia haemolytica NCTC 9380 . AF060699
prokMSA_id:9603 Mannheimia ruminalis str. HPA92 CCUG 38470 . AF053900
prokMSA_id:9604 Mannheimia UT26 str. UT26 CCUG 38455. AF053887
prokMSA_id:9606 Mannheimia haemolytica str. PH290; serotype UG3. U57069
prokMSA_id:9607 Mannheimia glucosida str. P733 CCUG 38460. AF053892
prokMSA_id:9609 Mannheimia granulomatis str. Ph13 CCUG 26828. AF053901
prokMSA_id:9613 Mannheimia haemolytica str. PH152; UT23; serotype UG3. U5706
prokMSA_id:9614 Mannheimia glucosida str. P737 CCUG 38459. AF053891
prokMSA_id:9615 Mannheimia haemolytica str. PH344; serotype A11
prokMSA_id:9616 Mannheimia glucosida str. P925 CCUG 38457 . AF053889
prokMSA_id:9623 Actinobacillus succinogenes str. 130Z ATCC 55618
prokMSA_id:9626 Haemophilus parainfluenzae str. 429 M.Pittman ATCC 7901. M75
prokMSA_id:9637 Haemophilus aphrophilus ATCC 33389 . M75041
prokMSA_id:19734 Pasteurella haemolytica strain ATCC33372 
prokMSA_id:23898 Actinobacillus sp. CCUG 28030 AF224302
prokMSA_id:26164 Haemophilus sp. oral clone BJ021 
prokMSA_id:29483 of Actinobacillus pleuropneumoniae
prokMSA_id:33358 Pasteurella haemolytica strain ATCC33374 
prokMSA_id:39543 Pasteurella haemolytica strain ATCC33367 
prokMSA_id:43001 Pasteurella haemolytica strain H160 
prokMSA_id:45092 of Actinobacillus pleuropneumoniae
prokMSA_id:45916 Pasteurella caballi MCCM 00841 
prokMSA_id:46397 clone p-4772-2Wb2 
prokMSA_id:51313 of Actinobacillus pleuropneumoniae
prokMSA_id:70974 Haemophilus influenzae MCCM 02082 AF224308
prokMSA_id:72830 Mannheimia sp. MCCM 00145 AF224286
prokMSA_id:73547 Actinobacillus sp. CCUG 24862 AF247712
prokMSA_id:74211 Actinobacillus pleuropneumoniae MCCM 00189 AF224283
prokMSA_id:74548 Pasteurellaceae gen. sp. Forsyth A3 
prokMSA_id:82532 Pasteurella gallinarum strain A88 AF487726
prokMSA_id:82586 Pasteurella gallinarum strain NCTC 11051 AF487728
prokMSA_id:82728 Pasteurella gallinarum strain R44sv AF487729
prokMSA_id:85469 Pasteurella gallinarum strain PG173 AF487727
prokMSA_id:91260 Pasteurella gallinarum AY172723
prokMSA_id:91315 Bisgaard taxon 40 
2.28.3.26.18 MNH.HAEMOLYTICA_SUBGROUP 3 seqs
2.28.3.26.18.840 OTU 3 seqs
prokMSA_id:9590 Mannheimia haemolytica str. PH704; serotype UG5
prokMSA_id:9592 Mannheimia HPA121 str. HPA121 CCUG 38468. AF053898
prokMSA_id:91910 Bisgaard taxon 3 biovar 1 
2.28.3.27 ENTERICS_AND_RELATIVES 413 seqs
2.28.3.27.1 BUCHNERA_SUBGROUP 23 seqs
2.28.3.27.1.841 OTU 1 seq
prokMSA_id:9640 Buchnera aphidicola
2.28.3.27.1.842 OTU 1 seq
prokMSA_id:9641 Buchnera aphidicola
2.28.3.27.1.843 OTU 1 seq
prokMSA_id:9642 Buchnera aphidicola
2.28.3.27.1.844 OTU 1 seq
prokMSA_id:9645 Buchnera aphidicola
2.28.3.27.1.845 OTU 1 seq
prokMSA_id:9646 Buchnera aphidicola
2.28.3.27.1.846 OTU 1 seq
prokMSA_id:9647 Buchnera aphidicola
2.28.3.27.1.847 OTU 1 seq
prokMSA_id:9648 Buchnera aphidicola
2.28.3.27.1.848 OTU 1 seq
prokMSA_id:9650 Buchnera aphidicola
2.28.3.27.1.849 OTU 1 seq
prokMSA_id:9651 Buchnera aphidicola
2.28.3.27.1.850 OTU 1 seq
prokMSA_id:9653 Buchnera aphidicola
2.28.3.27.1.851 OTU 1 seq
prokMSA_id:23181 Buchnera aphidicola Pterocomma populeum 
2.28.3.27.1.852 OTU 1 seq
prokMSA_id:36645 Buchnera aphidicola Stomaphis quercus 
2.28.3.27.1.853 OTU 1 seq
prokMSA_id:53693 Buchnera aphidicola Pemphigus populi 
2.28.3.27.1.854 OTU 9 seqs
prokMSA_id:9644 symbiont of symbiont P of Acyrthosiphon pisum. M27039
prokMSA_id:20966 Buchnera sp
prokMSA_id:24924 Buchnera aphidicola Tuberolachnus salignus 
prokMSA_id:35977 Buchnera sp
prokMSA_id:40619 Buchnera sp
prokMSA_id:47707 Buchnera sp. APS complete genome
prokMSA_id:51167 Buchnera sp
prokMSA_id:52753 Buchnera sp
prokMSA_id:70111 Buchnera sp. APS genomic complete segment 1/2
2.28.3.27.1.855 OTU 1 seq
prokMSA_id:20793 Buchnera aphidicola Geoica urticularia 
2.28.3.27.8 WIGGLESWORTHIA_SYMBIONT_SUBGROUP 2 seqs
2.28.3.27.8.856 OTU 1 seq
prokMSA_id:27576 Secondary endosymbiont of Psylla ?floccosa 
2.28.3.27.8.857 OTU 1 seq
prokMSA_id:63939 Secondary endosymbiont of Amonostherium lichtensioides and 2
2.28.3.27.11 KLEBSIELLA_SUBGROUP 2 seqs
2.28.3.27.11.2 ENB.ASBURIAE_SUBGROUP 2 seqs
2.28.3.27.11.2.858 OTU 2 seqs
prokMSA_id:10066 Tatumella ptyseos DSM 5000
prokMSA_id:10113 Pseudomonas flectens ATCC 12775. AB021400
2.28.3.27.12 SER.FICARIA_SUBGROUP 2 seqs
2.28.3.27.12.859 OTU 2 seqs
prokMSA_id:41789 clone 231
prokMSA_id:91521 clone K2-4-12 AY344377
2.28.3.27.13 XENORHABDUS_SUBGROUP 383 seqs
2.28.3.27.13.4 P.VULGARIS_SUBGROUP 383 seqs
2.28.3.27.13.4.860 OTU 3 seqs
prokMSA_id:21132 from Aleurodicus dugesii 
prokMSA_id:33418 Secondary endosymbiont of Bemisia tabaci clone UG26 
prokMSA_id:88891 Arsenophonus endosymbiont of Bemisia sp. and 23S genes 
2.28.3.27.13.4.861 OTU 129 seqs
prokMSA_id:7590 Achromatium oxaliferum. L42543
prokMSA_id:8051 str. AML-C10
prokMSA_id:9771 Pantoea agglomerans str. A44. AF130915
prokMSA_id:9772 Salmonella sp. AF130955
prokMSA_id:9789 Erwinia cacticida. AJ223409
prokMSA_id:9802 Brenneria paradisiaca LMG 2542 . Z96096
prokMSA_id:9809 Pantoea toletana str. A37. AF130910
prokMSA_id:9812 Pantoea toletana str. A25. AF130903
prokMSA_id:9815 Pantoea toletana str. A78. AF130966
prokMSA_id:9819 Pantoea toletana str. A64. AF130963
prokMSA_id:9820 Pantoea toletana str. A89. AF130965
prokMSA_id:9821 Pantoea cedenensis str. A34. AF130971
prokMSA_id:9833 Erwinia amylovora str. Ea1/79
prokMSA_id:9834 Erwinia pyrifoliae str. Ep1/96
prokMSA_id:9853 Pantoea endophytica str. A1. AF130888
prokMSA_id:9854 Pantoea endophytica str. A14. AF130893
prokMSA_id:9870 Pantoea oleae str. A66. AF130967
prokMSA_id:9871 Pantoea oleae str. A36. AF130969
prokMSA_id:9876 Pantoea agglomerans str. A12. AF130891
prokMSA_id:9878 Pantoea agglomerans str. A22. AF130900
prokMSA_id:9881 Pantoea agglomerans str. A28. AF130906
prokMSA_id:9882 Pantoea agglomerans str. A51. AF130922
prokMSA_id:9883 Pantoea agglomerans str. A53. AF130923
prokMSA_id:9884 Pantoea agglomerans str. A54. AF130924
prokMSA_id:9886 Pantoea agglomerans str. A60. AF130930
prokMSA_id:9887 Pantoea agglomerans str. A62. AF130932
prokMSA_id:9889 Pantoea agglomerans str. A65
prokMSA_id:9890 Pantoea agglomerans str. A67. AF130935
prokMSA_id:9893 Pantoea agglomerans str. A79. AF130944
prokMSA_id:9894 Pantoea agglomerans str. A81
prokMSA_id:9895 Pantoea agglomerans str. A91. AF130951
prokMSA_id:9896 Pantoea agglomerans str. A92
prokMSA_id:9897 Pantoea agglomerans str. A9. AF130961
prokMSA_id:9908 Pantoea agglomerans str. A123. AF130884
prokMSA_id:9909 Pantoea agglomerans str. A126. AF130886
prokMSA_id:9910 Pantoea agglomerans str. A20
prokMSA_id:9912 Pantoea agglomerans str. A19. AF130898
prokMSA_id:9913 Pantoea agglomerans str. A21. AF130899
prokMSA_id:9914 Pantoea agglomerans str. A27. AF130905
prokMSA_id:9915 Pantoea agglomerans str. A29. AF130907
prokMSA_id:9917 Pantoea agglomerans str. A40. AF130912
prokMSA_id:9919 Pantoea agglomerans str. A45. AF130916
prokMSA_id:9921 Pantoea agglomerans str. A47
prokMSA_id:9922 Pantoea agglomerans str. A48. AF130919
prokMSA_id:9923 Pantoea agglomerans str. A55. AF130925
prokMSA_id:9925 Pantoea agglomerans str. A58. AF130928
prokMSA_id:9926 Pantoea agglomerans str. A59. AF130929
prokMSA_id:9927 Pantoea agglomerans str. A61. AF130931
prokMSA_id:9929 Pantoea agglomerans str. A69. AF130937
prokMSA_id:9930 Pantoea agglomerans str. A70
prokMSA_id:9931 Pantoea agglomerans str. A72. AF130940
prokMSA_id:9932 Pantoea agglomerans str. A73
prokMSA_id:9934 Pantoea agglomerans str. A80. AF130945
prokMSA_id:9936 Pantoea agglomerans str. A84
prokMSA_id:9937 Pantoea agglomerans str. A87. AF130949
prokMSA_id:9939 Pantoea cedenensis str. A35. AF130970
prokMSA_id:9946 Pantoea stewartii subsp. stewartii str. SS11 LMG 2715 . Z960
prokMSA_id:9947 Enterobacter pyrinus KCTC 2520
prokMSA_id:10079 Pantoea endophytica str. A13. AF130892
prokMSA_id:10080 Pantoea endophytica str. A32. AF130908
prokMSA_id:10081 Pantoea endophytica str. A42. AF130914
prokMSA_id:10082 Pantoea endophytica str. A6. AF130958
prokMSA_id:10095 Enterobacter cancerogenus LMG 2693 . Z96078
prokMSA_id:10097 Pantoea agglomerans str. A15. AF130894
prokMSA_id:10100 Pantoea endophytica str. A3. AF130956
prokMSA_id:10101 Pantoea A5 str. A5. AF130957
prokMSA_id:10102 Pantoea agglomerans str. A8. AF130960
prokMSA_id:10105 Pantoea agglomerans str. IEGN2
prokMSA_id:10121 Enterobacter sp. U39556
prokMSA_id:10197 Brenneria rubrifaciens ATCC 29291
prokMSA_id:10198 Brenneria rubrifaciens LMG 2709 . Z96098
prokMSA_id:10201 Brenneria salicis LMG 2698
prokMSA_id:10202 Arsenophonus nasoniae str. SKI4. M90801
prokMSA_id:10203 Phlomobacter fragariae str. france. U91515
prokMSA_id:10239 Xenorhabdus nematophilus DSM 3370 . X82251
prokMSA_id:10244 Xenorhabdus bovienii ATCC 35271 . D78007
prokMSA_id:10245 Xenorhabdus poinarii DSM 4768 . D78010
prokMSA_id:10246 Xenorhabdus bovienii DSM 4766 . X82252
prokMSA_id:10256 Xenorhabdus poinarii DSM 4768 . X82253
prokMSA_id:10300 Xenorhabdus nematophilus ATCC 19061 . D78009
prokMSA_id:10301 Xenorhabdus japonicus str. SK-1 IAM 14265 . D78008
prokMSA_id:10305 Brenneria alni ICMP 12481 . AJ223468
prokMSA_id:10307 Brenneria nigrifluens ATCC 13028
prokMSA_id:10308 Brenneria nigrifluens LMG 2694 . Z96095
prokMSA_id:10309 Rahnella aquatilis str. 2-87. X79937
prokMSA_id:10322 Rahnella aquatilis str. 3-88; 334. X79940
prokMSA_id:10331 Rahnella aquatilis str. 334. X79936
prokMSA_id:10336 Rahnella aquatilis str. 339. X79938
prokMSA_id:10340 Rahnella aquatilis ATCC 33989. X79939
prokMSA_id:20481 Salmonella enterica serovar Typhi Salmonella typhi strain CT
prokMSA_id:22040 Methylobacter sp. LW12 
prokMSA_id:24638 gamma B2M28 AF223297
prokMSA_id:25611 Samsonia erythrinae complete 
prokMSA_id:26498 gamma MERTZ_2CM_288 
prokMSA_id:26769 Morganella morganii strain CIPA231T
prokMSA_id:28200 Klebsiella sp. ES14.2 AF221601
prokMSA_id:34643 Escherichia coli strain:MPEC EX-33
prokMSA_id:42416 Escherichia coli strain:MPEC Y-69
prokMSA_id:47069 E.amylovora 
prokMSA_id:49321 Citrobacter rodentium 
prokMSA_id:51229 Erwinia rubrifaciens strain DSM 4483
prokMSA_id:54964 Secondary endosymbiont of Heteropsylla texana ; intergenic s
prokMSA_id:55560 Pantoea stewartii subsp. stewartii 23S and internal transcri
prokMSA_id:55610 Methylobacter sp. clone C6 
prokMSA_id:56115 Serratia marcescens strain AU1209 AY043387
prokMSA_id:59792 clone OB3_36 
prokMSA_id:65334 Salmonella enterica serovar Typhi Salmonella typhi strain CT
prokMSA_id:65335 Salmonella enterica serovar Typhi Salmonella typhi strain CT
prokMSA_id:67218 Methylobacter sp. clone M21 
prokMSA_id:67221 Methylobacter sp. clone B1 
prokMSA_id:67223 Methylobacter sp. clone B21 
prokMSA_id:71660 human infant P13I AF253345
prokMSA_id:73097 human infant D26-2J AF253337
prokMSA_id:73250 human infant S1G AF253348
prokMSA_id:74428 Salmonella enterica serovar Dublin AF227868
prokMSA_id:76445 Escherichia coli CFT073 section 13 of 18 of the complete gen
prokMSA_id:80228 clone Bol92 
prokMSA_id:83958 Salmonella enterica subsp. enterica serovar Typhi Ty2 sectio
prokMSA_id:84587 Hafnia alvei isolate m 49 AY253923
prokMSA_id:85224 Serratia liquefaciens AY243097
prokMSA_id:85907 Salmonella enterica subsp. enterica serovar Typhi Ty2 sectio
prokMSA_id:86419 Salmonella enterica subsp. enterica serovar Typhi Ty2 sectio
prokMSA_id:87799 Xenorhabdus bovienii 
prokMSA_id:88742 Arsenophonus endosymbiont of Tetraleurodes mori ; tRNA-Glu c
prokMSA_id:89531 Xenorhabdus bovienii strain CB54 
prokMSA_id:89902 Arsenophonus endosymbiont of Aleyrodes elevatus ; tRNA-Glu c
prokMSA_id:90023 Arsenophonus endosymbiont of Aleurodicus dispersus ; tRNA-Al
prokMSA_id:94840 gamma- clone S15B-MN136
prokMSA_id:97305 clone mv13.1 
2.28.3.27.13.4.862 OTU 251 seqs
prokMSA_id:6795 Azoarcus sp. str. pF6
prokMSA_id:6797 Azoarcus T str. T
prokMSA_id:6800 clone H30
prokMSA_id:7559 str. Thd2
prokMSA_id:7594 Achromatium JD8
prokMSA_id:7642 str. JTB35
prokMSA_id:7695 Thiomicrospira kuenenii str. JB-A1
prokMSA_id:8052 str. AML-D4
prokMSA_id:8876 str. SUR ATT
prokMSA_id:8963 Pseudoalteromonas S9 str. S9
prokMSA_id:9675 Alterococcus agarolyticus str. ADT3
prokMSA_id:9710 Salmonella paratyphi
prokMSA_id:9746 Enterobacter sakazakii str. Ct2 JCM 1233
prokMSA_id:9751 Citrobacter koseri CDC 3613-63
prokMSA_id:9775 Salmonella enteritidis. NONE
prokMSA_id:9784 Klebsiella planticola JCM 7251 . AB004755
prokMSA_id:9787 Pectobacterium carotovorum subsp. wasabiae str. SR 91 ATCC 4
prokMSA_id:9796 Leminorella grimontii DSM 5078
prokMSA_id:9799 Enterobacter agglomerans str. AH16
prokMSA_id:9807 Pantoea toletana str. A4
prokMSA_id:9845 Citrobacter freundii DSM 30039
prokMSA_id:9857 Enterobacter gergoviae JCM 1234 . AB004748
prokMSA_id:9860 Klebsiella oxytoca ATCC 13182 . Y17655
prokMSA_id:9864 Erwinia cypripedii str. HeP01. AF076154
prokMSA_id:9868 unnamed organism
prokMSA_id:9873 Pantoea ananas JCM 6986
prokMSA_id:9885 Pantoea agglomerans str. A57
prokMSA_id:9898 Erwinia herbicola JCM 7000. AB004757
prokMSA_id:9940 unnamed organism. AB004759
prokMSA_id:9944 Pantoea stewartii subsp. stewartii str. SS11 ATCC 8199
prokMSA_id:9953 symbiont of Camponotus herculeanus
prokMSA_id:9956 symbiont of Camponotus ligniperda
prokMSA_id:9976 symbiont of secondary endosymbiont of Glossina pallidipes ts
prokMSA_id:9977 Yersinia sp. str. KM16
prokMSA_id:9987 str. SFr
prokMSA_id:9990 Pectobacterium carotovorum subsp. carotovorum ATCC 15713 . M
prokMSA_id:10003 Serratia marcescens ATCC 13880 . M59160
prokMSA_id:10034 Serratia marcescens
prokMSA_id:10075 Pantoea agglomerans str. ATTC27155 JCM 1236
prokMSA_id:10077 Enterobacter cloacae str. Nr. 3
prokMSA_id:10087 Enterobacter cloacae str. drh3
prokMSA_id:10109 Klebsiella oxytoca str. 5725y. Y17660
prokMSA_id:10110 Klebsiella oxytoca str. 5884. Y17661
prokMSA_id:10111 Klebsiella oxytoca str. i128-94. Y17667
prokMSA_id:10112 Klebsiella sp. str. BEC441. Y17664
prokMSA_id:10124 Klebsiella terrigena ATCC 33257
prokMSA_id:10125 Klebsiella terrigena str. SW4. Y17670
prokMSA_id:10126 Klebsiella planticola ATCC 33531 . Y17659
prokMSA_id:10128 Klebsiella ornithinolytica str. 590681. Y17662
prokMSA_id:10129 Klebsiella planticola str. 7444. Y17663
prokMSA_id:10130 Klebsiella ornithinolytica str. FSK9555. Y17666
prokMSA_id:10135 Serratia liquefaciens JCM 1245
prokMSA_id:10142 Klebsiella pneumoniae subsp. ozaenae ATCC 11296 . Y17654
prokMSA_id:10144 Klebsiella pneumoniae DSM 30102. X93214
prokMSA_id:10148 Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884
prokMSA_id:10149 Klebsiella pneumoniae str. Klebs313. Y17668
prokMSA_id:10151 Klebsiella pneumoniae subsp. pneumoniae ATCC 13883 . Y17656
prokMSA_id:10152 Klebsiella pneumoniae str. Klebs919. Y17669
prokMSA_id:10153 Klebsiella pneumoniae subsp. pneumoniae JCM 1662 . AB004753
prokMSA_id:10163 Serratia ficaria JCM 1241
prokMSA_id:10169 Serratia fonticola DSM 4576
prokMSA_id:10182 str. BD3-12
prokMSA_id:10212 str. AM
prokMSA_id:10240 Xenorhabdus nematophilus str. N2-4
prokMSA_id:10302 Hafnia alvei ATCC 13337 . M59155
prokMSA_id:10306 Brenneria alni DSM 11811
prokMSA_id:10312 Rahnella 'CDC 658-79' CDC 658-79
prokMSA_id:10313 Rahnella 'CDC Bonn7' CDC Bonn7
prokMSA_id:10314 Rahnella 'CDC Italy 2383' str. 2383 CDC Italy
prokMSA_id:10316 unnamed organism. AB004762
prokMSA_id:10355 Yersinia mollaretii str. ER-2975. X75280
prokMSA_id:10357 Yersinia kristensenii str. ER-2812 ATCC 33638 . X75278
prokMSA_id:10366 Yersinia pseudotuberculosis str. Serotype III 1B1 B28 W.W.
prokMSA_id:10382 Yersinia pestis str. SS-Yp-115
prokMSA_id:10392 Yersinia pestis
prokMSA_id:10397 Plesiomonas shigelloides str. M51 ATCC 14029 . M59159
prokMSA_id:17402 Klebsiella oxytoca 
prokMSA_id:17691 Yersinia intermedia 
prokMSA_id:17733 Yersinia kristensenii 
prokMSA_id:18014 Yersinia pseudotuberculosis 
prokMSA_id:18247 Serratia plymuthica DSM 49 
prokMSA_id:18414 Proteus vulgaris strain CIP103181T
prokMSA_id:18836 Pantoea sp. 'Cibuni media isolate 74' 
prokMSA_id:19687 Proteus mirabilis 
prokMSA_id:20073 sheep mite Caithness 8 
prokMSA_id:21087 clone p-261-o5 
prokMSA_id:22202 Yersinia pseudotuberculosis strain 2883 
prokMSA_id:22310 Yersinia pseudotuberculosis strain 257 
prokMSA_id:22395 clone 125
prokMSA_id:23050 Yersinia pseudotuberculosis strain R 708 LY 
prokMSA_id:23716 Yersinia pseudotuberculosis strain R 1505 
prokMSA_id:24038 clone p-502-o2 
prokMSA_id:24848 Nitrogen-fixing CANF3 AF214640
prokMSA_id:25734 Citrobacter sp. TSA-1 
prokMSA_id:25758 Yersinia pseudotuberculosis strain 151 
prokMSA_id:26295 Klebsiella oxytoca 
prokMSA_id:26797 gamma clone BIci26
prokMSA_id:27315 sheep mite Llangefni 75 
prokMSA_id:27763 Pantoea agglomerans 
prokMSA_id:28107 coding of Escherichia coli
prokMSA_id:28126 Yersinia pseudotuberculosis strain 1147 
prokMSA_id:28317 clone p-229-o5 
prokMSA_id:29479 clone Car731c 
prokMSA_id:30259 clone Car94rb 
prokMSA_id:30561 Yersinia pseudotuberculosis strain 204 
prokMSA_id:31810 Secondary symbiont -R of Acyrthosiphon pisum rrs 
prokMSA_id:32418 Gamma-symbiont of Antonina crawii 
prokMSA_id:32947 Gamma MPD-79 
prokMSA_id:34251 soil clone 431-1 
prokMSA_id:34461 Yersinia rohdei 
prokMSA_id:35041 Klebsiella ornithinolytica 
prokMSA_id:35507 Yersinia pseudotuberculosis strain 354 
prokMSA_id:35957 Yersinia pestis 
prokMSA_id:36854 Providencia alcalifaciens strain CIP8290T
prokMSA_id:37204 Proteus vulgaris 
prokMSA_id:37259 Yersinia mollaretii 
prokMSA_id:37543 Yersinia pseudotuberculosis strain 49 
prokMSA_id:37741 Nitrogen-fixing CC262C 
prokMSA_id:37966 Secondary symbiont -R of Uroleucon caligatum rrs 
prokMSA_id:38612 Yersinia pseudotuberculosis strain Kuratani-2 
prokMSA_id:38852 soil clone 1389-1 
prokMSA_id:39860 Yersinia aldovae 
prokMSA_id:40056 clone p-2172-s959-3 
prokMSA_id:40380 Camponotus herculeanus endosymbiont strain USA
prokMSA_id:40499 sheep mite Caithness 1 
prokMSA_id:41642 Yersinia bercovieri 
prokMSA_id:41648 Yersinia frederiksenii 
prokMSA_id:42238 Yersinia pseudotuberculosis strain 51 
prokMSA_id:42764 Yersinia pseudotuberculosis strain 197 
prokMSA_id:43147 Yersinia pseudotuberculosis strain 83 
prokMSA_id:43494 Yersinia pseudotuberculosis strain 274 
prokMSA_id:43863 Serratia odorifera DSM 4582 
prokMSA_id:44251 gamma Arctic96AD-9 
prokMSA_id:45337 Providencia stuartii 
prokMSA_id:45637 Erwinia nigrifluens strain DSM 30175
prokMSA_id:46026 sp. Lake Elmenteita isolate 2E1
prokMSA_id:46170 clone p-463-o3 
prokMSA_id:46776 Escherichia coli O157:H7 EDL933 genome contig 3 of 3 section
prokMSA_id:46931 Erwinia salicis strain DSM 30166
prokMSA_id:46996 Yersinia pseudotuberculosis strain 6088 
prokMSA_id:47117 Pantoea ananatis strain LMG 20105 
prokMSA_id:47714 Gamma F8 
prokMSA_id:48268 alpha MERTZ_0CM_244 
prokMSA_id:48494 gamma clone 8-4 
prokMSA_id:49240 Escherichia coli O157:H7 EDL933 genome contig 3 of 3 section
prokMSA_id:49548 Pantoea agglomerans 3' end strain NCTC 9381 T
prokMSA_id:50084 clone p-2009-s959-5 
prokMSA_id:50167 Klebsiella pneumoniae 3' 
prokMSA_id:50412 Enterobacter sp. 16-31 AF126103
prokMSA_id:50988 Yersinia ruckeri 
prokMSA_id:50997 Secondary symbiont -U of Uroleucon solidaginis rrs 
prokMSA_id:51124 Escherichia coli O157:H7 complete genome section 18/20
prokMSA_id:51726 Rahnella sp. 0011 836 strain 0011 836
prokMSA_id:51804 Yersinia pseudotuberculosis strain 2660 
prokMSA_id:51811 Leclercia adecarboxylata strain WG 184
prokMSA_id:52382 Yersinia pseudotuberculosis strain 212 
prokMSA_id:52537 gamma MERTZ_2CM_72 
prokMSA_id:52635 Salmonella enterica IIIa 
prokMSA_id:52901 Yersinia enterocolitica 
prokMSA_id:52942 Secondary endosymbiont of Blastopsylla occidentalis ; interg
prokMSA_id:53341 clone Car36rc 
prokMSA_id:53373 soil clone 336-1 
prokMSA_id:53771 Enterobacter sp. 3-45 AF126102
prokMSA_id:54261 clone Car35rc 
prokMSA_id:55738 amplicon H2
prokMSA_id:56451 Yersinia pestis KIM section 2 of 415 of the complete genome
prokMSA_id:57521 Yersinia pestis strain CO92 complete genome; segment 1/20
prokMSA_id:57526 Yersinia pestis strain CO92 complete genome; segment 18/20
prokMSA_id:58294 Klebsiella oxytoca strain ChDC OS31 
prokMSA_id:59923 beta clone ccs2133 
prokMSA_id:60334 clone Phe11 
prokMSA_id:60351 clone Caf17 
prokMSA_id:61202 Dickeya dadantii 
prokMSA_id:61809 gamma clone CLs91 
prokMSA_id:61810 gamma clone CLs85 
prokMSA_id:62411 gamma clone FTL260 
prokMSA_id:63168 Yersinia pestis KIM section 385 of 415 of the complete genom
prokMSA_id:63172 Yersinia pestis KIM section 311 of 415 of the complete genom
prokMSA_id:63173 Yersinia pestis KIM section 47 of 415 of the complete genome
prokMSA_id:63174 Yersinia pestis KIM section 94 of 415 of the complete genome
prokMSA_id:63175 Yersinia pestis KIM section 51 of 415 of the complete genome
prokMSA_id:63176 Yersinia pestis KIM section 32 of 415 of the complete genome
prokMSA_id:63456 Xenorhabdus nematophila complete 
prokMSA_id:63935 Secondary endosymbiont of Planococcus citri and 23S genes 
prokMSA_id:63937 Secondary endosymbiont of Planococcus ficus and 23S genes 
prokMSA_id:63942 Secondary endosymbiont of Antonina pretiosa and 23S genes 
prokMSA_id:63943 Secondary endosymbiont of Australicoccus grevilleae and 23S 
prokMSA_id:63980 Klebsiella pneumoniae 
prokMSA_id:64270 Pantoea sp. P102 strain P102 AF394539
prokMSA_id:65406 Escherichia coli 
prokMSA_id:66563 amplicon M
prokMSA_id:66728 Pantoea stewartii subsp. stewartii strain GSPB 2626 
prokMSA_id:67215 Methylobacter sp. clone B2 
prokMSA_id:68618 clone KRA30+17 
prokMSA_id:68951 Escherichia coli O157:H7 purH rrsE gltV rrlE rrfE yjaB metA 
prokMSA_id:68955 Escherichia coli O157:H7 murI rrsB gltT rrlB rrfB murB genes
prokMSA_id:68956 Escherichia coli O157:H7 hemG rrsA ileT alaT rrlA rrfA mobB 
prokMSA_id:69316 gamma clone DC8-80-1 
prokMSA_id:69815 Buttiauxella agrestis strain S3/3-203 AJ293684
prokMSA_id:69978 Buttiauxella noackiae strain BR 626 AJ293687
prokMSA_id:70049 Buttiauxella noackiae strain NSW11T ATCC 51607T AJ293689
prokMSA_id:70171 soil clone 624-1 AF423283
prokMSA_id:70983 Escherichia coli O157:H7 EDL933 genome contig 3 of 3 section
prokMSA_id:71151 Escherichia coli O157:H7 EDL933 genome contig 3 of 3 section
prokMSA_id:71494 Leclercia adecarboxylata strain LBV 449 AJ276393
prokMSA_id:71762 Pantoea sp. P101 strain P101 AF394538
prokMSA_id:72385 Buttiauxella noackiae strain BR 489 AJ293688
prokMSA_id:73164 Buttiauxella agrestis strain CDC 1176-81T ATCC 33320T AJ2936
prokMSA_id:73274 Klebsiella pneumoniae AF511429
prokMSA_id:73497 soil clone 816-1 AF423294
prokMSA_id:73789 Pectobacterium carotovorum subsp. odoriferum strain 1880 AF3
prokMSA_id:74610 Endosymbiont of Camponotus socius clone 11/3
prokMSA_id:75277 clone:KSRS12 AB075110
prokMSA_id:75320 clone:KCR13
prokMSA_id:75554 Swine manure RT-4D 
prokMSA_id:76208 clone:KSRS19
prokMSA_id:76905 Swine manure RT-5C 
prokMSA_id:79842 clone BMSB10 
prokMSA_id:80483 Baumannia cicadellinicola ; tRNA-Glu complete ; and 23S 
prokMSA_id:82122 clone SD115 
prokMSA_id:82434 Pectobacterium carotovorum subsp. brasiliensis strain 371 
prokMSA_id:83212 Citrobacter freundii strain WA1 
prokMSA_id:84051 Enterobacter sp. 2002-2301161 
prokMSA_id:84190 Escherichia senegalensis 
prokMSA_id:85525 Serratia marcescens 
prokMSA_id:87277 Pantoea sp. J14 
prokMSA_id:90074 Secondary endosymbiont of Bemisia tabaci ; tRNA-Glu complete
prokMSA_id:91290 H16 
prokMSA_id:91327 clone K2-30-20 
prokMSA_id:91557 H3 
prokMSA_id:91649 gamma 128 
prokMSA_id:91962 clone GLSR-9 
prokMSA_id:92956 Primary endosymbiont of Sitophilus granarius 
prokMSA_id:94581 Pantoea agglomerans strain EPS125
prokMSA_id:94741 gamma- clone S15D-MN213
prokMSA_id:94946 Klebsiella pneumoniae AY369139
prokMSA_id:95192 Pantoea agglomerans strain Pa4842
prokMSA_id:95263 Primary endosymbiont of Sitophilus oryzae -23S rrnC operon c
prokMSA_id:95304 Pantoea agglomerans strain Pa850T AJ583835
prokMSA_id:95853 clone LB1B7 
prokMSA_id:95903 Primary endosymbiont of Sitophilus zeamais -23S operon compl
prokMSA_id:96496 Primary endosymbiont of Sitophilus zeamais -23S rrnC operon 
prokMSA_id:96697 Primary endosymbiont of Sitophilus oryzae -23S operon comple
prokMSA_id:96731 Primary endosymbiont of Sitophilus zeamais -23S rrnB operon 
prokMSA_id:97130 Enterobacter sp. NAB4 
prokMSA_id:97695 Pseudomonas sp. NAB3 
prokMSA_id:97704 Primary endosymbiont of Sitophilus oryzae -23S rrnB operon c
prokMSA_id:97799 Sodalis glossinidius -23S rrnB operon complete 
prokMSA_id:97959 Pantoea sp. NAB7 
prokMSA_id:97987 Enterobacter sp. NAB5 
prokMSA_id:98251 gamma clone NAB21 
2.28.3.27.14 YERSINIA_SUBGROUP 1 seq
2.28.3.27.14.1 BN.NIGRIFLUENS_SUBGROUP 1 seq
2.28.3.27.14.1.863 OTU 1 seq
prokMSA_id:86541 Hafnia alvei isolate k 43 
2.28.4 DELTA_SUBDIVISION 110 seqs
2.28.4.1 DESULFOVIBRIO_GROUP 27 seqs
2.28.4.1.4 DESULFOVIBRIO_SUBGROUP 27 seqs
2.28.4.1.4.6 DSV.AFRICANUS_SUBGROUP 1 seq
2.28.4.1.4.6.864 OTU 1 seq
prokMSA_id:66105 delta clone:KB47
2.28.4.1.4.9 LW.INTRACELLULARIS_SUBGROUP 7 seqs
2.28.4.1.4.9.865 OTU 7 seqs
prokMSA_id:10489 symbiont of intracellular ileal symbiont of Mesocricetus aur
prokMSA_id:10490 Lawsonia intracellularis str. 1482/89 NCTC 12656 . U30147
prokMSA_id:10491 symbiont of Sus scrofa. L15739
prokMSA_id:10492 Lawsonia intracellularis. U65995
prokMSA_id:10496 Desulfovibrio sp. str. MIT 87-599
prokMSA_id:72733 Lawsonia intracellularis U30147
prokMSA_id:74139 Desulfovibrio sp
2.28.4.1.4.10 DSV.LONGREACHENSIS_SUBGROUP 7 seqs
2.28.4.1.4.10.866 OTU 7 seqs
prokMSA_id:10486 Desulfovibrio cuneatus str. STL1 DSM 11391
prokMSA_id:10505 Desulfovibrio sp. str. DMB. X86689
prokMSA_id:10526 Desulfovibrio sp. str. KRS1
prokMSA_id:22674 clone 9E 
prokMSA_id:36540 Desulfovibrio vulgaris DSM 644 
prokMSA_id:45268 Desulfovibrio desulfuricans subsp. desulfuricans strain Esse
prokMSA_id:93184 Desulfovibrio vulgaris strain I5 
2.28.4.1.4.11 DSV.DESULFURICANS_SUBGROUP 12 seqs
2.28.4.1.4.11.867 OTU 3 seqs
prokMSA_id:10516 Desulfovibrio desulfuricans
prokMSA_id:30569 clone p-2918-6C5 
prokMSA_id:48934 Desulfovibrio desulfuricans 
2.28.4.1.4.11.868 OTU 8 seqs
prokMSA_id:10511 Desulfovibrio fairfieldensis
prokMSA_id:10512 Desulfovibrio ABHU1SB str. ABHU1SB. AF056088
prokMSA_id:10513 Desulfovibrio ABHU1SBfatS str. ABHU1SBfatS. AF056089
prokMSA_id:10514 Desulfovibrio ABHU2SB str. ABHU2SB
prokMSA_id:25583 Desulfovibrio sp. D4 complete 
prokMSA_id:49692 Desulfovibrio sp. DSM12803 
prokMSA_id:51535 Desulfomonas pigra complete 
prokMSA_id:52234 clone p-223-o5 
2.28.4.1.4.11.869 OTU 1 seq
prokMSA_id:33199 Desulfovibrio desulfuricans subsp. desulfuricans strain MB c
2.28.4.6 MYXOBACTERIA 48 seqs
2.28.4.6.1 MYX.XANTHUS_SUBGROUP 20 seqs
2.28.4.6.1.870 OTU 1 seq
prokMSA_id:47762 Myxococcus fulvus 
2.28.4.6.1.871 OTU 3 seqs
prokMSA_id:10588 Melittangium lichenicola ATCC 25946. M94277
prokMSA_id:10590 Corallococcus exiguus str. Cc e100
prokMSA_id:10593 Myxococcus coralloides str. M2 ATCC 25202 . M94278
2.28.4.6.1.872 OTU 4 seqs
prokMSA_id:10602 Myxococcus fulvus str. Mx f2
prokMSA_id:10604 Myxococcus fulvus str. Mx f428
prokMSA_id:10608 Myxococcus stipitatus str. Mx s42
prokMSA_id:10609 Myxococcus stipitatus str. Mx s52
2.28.4.6.1.873 OTU 6 seqs
prokMSA_id:10589 Corallococcus exiguus str. Cc e12b
prokMSA_id:10603 Myxococcus fulvus str. Mx f421
prokMSA_id:10605 Myxococcus macrosporus str. Cc m7
prokMSA_id:10607 Myxococcus stipitatus str. Mx s33
prokMSA_id:20918 Myxococcus fulvus 128-7 complete 
prokMSA_id:34703 Myxococcus fulvus strain 125-1 complete 
2.28.4.6.1.874 OTU 4 seqs
prokMSA_id:10594 Myxococcus xanthus str. DK1622. M34114
prokMSA_id:10601 Myxococcus flavescens str. Mx fl1
prokMSA_id:10610 Myxococcus virescens str. Mx v2
prokMSA_id:66414 Myxococcus xanthus 
2.28.4.6.1.875 OTU 2 seqs
prokMSA_id:10580 Stigmatella aurantiaca ATCC 25190 . M94281
prokMSA_id:10581 Stigmatella erecta str. Pd e3
2.28.4.6.3 POL.CELLULOSUM_SUBGROUP 28 seqs
2.28.4.6.3.876 OTU 21 seqs
prokMSA_id:10639 Chondromyces apiculatus str. Cm a14
prokMSA_id:10641 Chondromyces pediculatus str. Cm p17
prokMSA_id:10642 Chondromyces robustus str. Cm a22
prokMSA_id:10644 Chondromyces crocatus str. Cm c6. M94275
prokMSA_id:10645 Polyangium thaxteri str. Pl t3
prokMSA_id:10655 Polyangium sp. str. Pl 4943. M94280
prokMSA_id:10656 Polyangium cellulosum subsp. ferrugineum str. SMP 456 ATCC 2
prokMSA_id:17113 Polyangium cellulosum complete 
prokMSA_id:22473 Polyangium cellulosum strain So9857 complete 
prokMSA_id:24751 Polyangium cellulosum strain So ce56
prokMSA_id:26373 Polyangium cellulosum strain 9741 complete 
prokMSA_id:29731 Polyangium cellulosum strain So0089-1 complete 
prokMSA_id:33812 Polyangium cellulosum strain So ce26 complete 
prokMSA_id:39056 Polyangium cellulosum strain 87-5 complete 
prokMSA_id:41480 Polyangium cellulosum strain So9882-1 complete 
prokMSA_id:45207 Polyangium cellulosum So9721-1 complete 
prokMSA_id:46866 Polyangium cellulosum strain So9881 complete 
prokMSA_id:47189 Polyangium cellulosum strain So9735-22 complete 
prokMSA_id:72161 Polyangium cellulosum strain So ce90 AJ316015
prokMSA_id:82906 Polyangium cellulosum strain So02007-3 complete 
prokMSA_id:86196 Polyangium cellulosum strain So9734 complete 
2.28.4.6.3.877 OTU 3 seqs
prokMSA_id:67784 isolate C1_B003 
prokMSA_id:71175 isolate C1_B002 AF420356
prokMSA_id:72214 delta isolate Eel-36e1D6 AF354167
2.28.4.6.3.878 OTU 4 seqs
prokMSA_id:10649 Nannocystis aggregans str. Na a1
prokMSA_id:10650 Nannocystis exedens str. Na e1
prokMSA_id:10651 Nannocystis exedens str. Na e571
prokMSA_id:73759 Nannocystis exedens AB084253
2.28.4.7 DESULFUROMONAS_GROUP 13 seqs
2.28.4.7.1 PEB.ACETYLENICUS_SUBGROUP 5 seqs
2.28.4.7.1.879 OTU 3 seqs
prokMSA_id:41059 Desulfuromonas michiganensis strain BB1 
prokMSA_id:51450 Desulfuromonas michiganensis strain BRS1 
prokMSA_id:79310 Desulfuromonas sp. clone AKS67 
2.28.4.7.1.880 OTU 1 seq
prokMSA_id:91949 clone W4-B35 
2.28.4.7.1.881 OTU 1 seq
prokMSA_id:40927 delta MERTZ_21CM_235 
2.28.4.7.2 DSM.ACETOXIDANS_SUBGROUP 1 seq
2.28.4.7.2.882 OTU 1 seq
prokMSA_id:10699 Desulfuromonas thiophila str. NZ27 DSMZ 8987
2.28.4.7.4 GBC.METALLIREDUCENS_SUBGROUP 7 seqs
2.28.4.7.4.883 OTU 1 seq
prokMSA_id:62386 delta clone FTLpost101 
2.28.4.7.4.884 OTU 5 seqs
prokMSA_id:10728 Geobacter arculus str. Dfr1. U96917
prokMSA_id:10729 Geobacter akaganeitreducens str. Dfr2
prokMSA_id:62391 delta clone FTLM68 
prokMSA_id:62393 epsilon clone FTLM50 
prokMSA_id:76599 delta clone S15A-MN13
2.28.4.7.4.885 OTU 1 seq
prokMSA_id:81438 clone ZZ12C10 
2.28.4.8 BDE.BACTERIOVORUS_GROUP 6 seqs
2.28.4.8.886 OTU 6 seqs
prokMSA_id:10745 Bdellovibrio str. 109J ATCC 43826. M59297
prokMSA_id:30112 Bdellovibrio strain BRP4 
prokMSA_id:40880 Bdellovibrio strain 100 
prokMSA_id:44877 Bdellovibrio strain E 
prokMSA_id:49295 Bdellovibrio strain BEP2 
prokMSA_id:93966 Acidobacteria clone JG36-GS-146
2.28.4.10 DESULFOBULBUS_ASSEMBLAGE 3 seqs
2.28.4.10.887 OTU 1 seq
prokMSA_id:55539 delta clone SLM-DSBAC-74 
2.28.4.10.888 OTU 1 seq
prokMSA_id:54711 clone C26-9 
2.28.4.10.889 OTU 1 seq
prokMSA_id:36411 clone C12-12 
2.28.4.11 DBB.PROPIONICUS_ASSEMBLAGE 3 seqs
2.28.4.11.890 OTU 3 seqs
prokMSA_id:67800 isolate a1b003 AF420337
prokMSA_id:71121 delta isolate Eel-BE1A3 AF354149
prokMSA_id:77835 delta clone Hyd89-19
2.28.4.13 DESULFOBACTER_GROUP 10 seqs
2.28.4.13.7 DSB.POSTGATEI_SUBGROUP 10 seqs
2.28.4.13.7.891 OTU 5 seqs
prokMSA_id:10921 Desulfobacter postgatei str. 2 ac 9 DSM 2034 . M26633
prokMSA_id:10922 Desulfobacter vibrioformis str. B54 DSMZ 8776 . U12254
prokMSA_id:10923 Desulfobacter BG8 str. BG8
prokMSA_id:10925 Desulfobacter BG72 str. BG72. U85476
prokMSA_id:47150 Desulfobacter postgatei DSM 2034 
2.28.4.13.7.892 OTU 3 seqs
prokMSA_id:10933 Desulfobacula toluolica str. Tol2 DSM 7467. X70953
prokMSA_id:10936 Desulfobacterium phenolicum str. marine mud DSM 3384
prokMSA_id:67542 Desulfobacula toluolica strain DSM 7467
2.28.4.13.7.893 OTU 2 seqs
prokMSA_id:10928 Desulfobacter ASv25 str. ASv25
prokMSA_id:78718 Desulfobacula sp. clone SB4_98 AY177803
2.28.5 EPSILON_SUBDIVISION 234 seqs
2.28.5.1 HELICOBACTER_AND_RELATIVES 142 seqs
2.28.5.1.1 HLB.PYLORI_SUBGROUP 135 seqs
2.28.5.1.1.894 OTU 1 seq
prokMSA_id:11061 Helicobacter mustelae str. Fox R85-13-6 NCTC 12198
2.28.5.1.1.895 OTU 12 seqs
prokMSA_id:10951 Helicobacter pametensis str. Seymour B15 CCUG 29259. M88142
prokMSA_id:10953 Helicobacter pametensis str. Seymour M17 CCUG 29260. M88155
prokMSA_id:10956 Helicobacter pametensis str. Seymour B13 CCUG 29258. M88141
prokMSA_id:10961 Helicobacter sp. str. Seymour B8 CCUG 29254. M88146
prokMSA_id:10965 Helicobacter sp. str. Seymour B52 CCUG 29561. M88144
prokMSA_id:11050 Helicobacter cholecystus str. Hkb-1 ATCC 700242 . U46129
prokMSA_id:11065 Helicobacter pametensis str. Seymour B7 CCUG 29253. M88145
prokMSA_id:11079 Helicobacter pametensis str. Seymour B12 CCUG 29257. M88140
prokMSA_id:11081 Helicobacter sp. str. Seymour 10B CCUG 29256 . M88139
prokMSA_id:11083 Helicobacter pametensis str. Seymour B9 CCUG 29255 . M88147
prokMSA_id:50310 Helicobacter pametensis 
prokMSA_id:81282 Helicobacter sp. MIT 01-6242 
2.28.5.1.1.896 OTU 81 seqs
prokMSA_id:10960 Helicobacter sp
prokMSA_id:10976 Helicobacter hepaticus str. FRED1
prokMSA_id:10979 Helicobacter sp. str. Dog-4 Eaton 1302. U51874
prokMSA_id:10981 Helicobacter sp. CCUG 29176. L14634
prokMSA_id:10998 Helicobacter hepaticus str. Fox Hh-3 ATCC 51450. U07575
prokMSA_id:11001 Flexispira rappini NCTC 12461
prokMSA_id:11010 Helicobacter hepaticus str. Fox Hh-2 ATCC 51448 . U07574
prokMSA_id:11020 Helicobacter bilis str. Hb3 ATCC 51632. U18768
prokMSA_id:11021 Flexispira rappini str. FH 9702248
prokMSA_id:11022 Flexispira rappini str. H1353
prokMSA_id:11023 Helicobacter sp
prokMSA_id:11039 Helicobacter muridarum str. ST1 ATCC 49282 . M80205
prokMSA_id:11040 Helicobacter muridarum str. UNSW 1.7st
prokMSA_id:11042 Helicobacter hepaticus str. Fox Hh-1 ATCC 51449. U07573
prokMSA_id:11052 Helicobacter cinaedi CCUG 18818 . M88150
prokMSA_id:11053 Helicobacter sp
prokMSA_id:11060 Helicobacter bilis str. Hb1 ATCC 51630 . U18766
prokMSA_id:11064 Helicobacter canis str. MIT 98-152
prokMSA_id:11068 Helicobacter bilis str. Hb2 ATCC 51631
prokMSA_id:11069 Flexispira CDC-H69 str. CDC-H69
prokMSA_id:11071 Helicobacter bilis str. MIT 92-7660
prokMSA_id:11072 Helicobacter bilis str. MIT 93-3055
prokMSA_id:11073 Helicobacter bilis str. MIT 93-4659
prokMSA_id:11074 Helicobacter bilis str. MIT 97-6452. AF047846
prokMSA_id:11075 Flexispira rappini str. MIT 97-6457. AF047848
prokMSA_id:11076 Flexispira rappini str. MIT 97-6459. AF047849
prokMSA_id:11087 Flexispira rappini str. DBS59
prokMSA_id:11089 Flexispira rappini NADC 1937. M88138
prokMSA_id:16301 Helicobacter sp. 'MIT 97-6194-5' 
prokMSA_id:19124 Helicobacter sp. UNSW3.11cae 
prokMSA_id:19165 Helicobacter sp. ABHU3cae 
prokMSA_id:19959 Helicobacter canis 
prokMSA_id:19975 Helicobacter bilis strain HRI3caefr 
prokMSA_id:20805 Helicobacter cinaedi strain CCUG 33887 
prokMSA_id:20816 Helicobacter cinaedi isolate 30327 
prokMSA_id:23629 Helicobacter sp. 'Flexispira taxon 8' strain ATCC 49317 
prokMSA_id:24587 Helicobacter cinaedi isolate 30527 
prokMSA_id:25488 Helicobacter muridarum 
prokMSA_id:26344 Helicobacter sp. isolate 1199 AJ249855
prokMSA_id:26749 Helicobacter sp. MIT 98-5357 complete 
prokMSA_id:26909 Helicobacter sp. isolate 1058 AJ249857
prokMSA_id:27055 Helicobacter sp. MIT 99-5504 
prokMSA_id:27482 Helicobacter cinaedi strain ADN 0413 
prokMSA_id:28820 Helicobacter bilis U51873
prokMSA_id:28994 Helicobacter sp. 'Flexispira taxon 4' AF225548
prokMSA_id:29701 Helicobacter rappini W.Tee-Yu 
prokMSA_id:29786 Flexispira rappini and intervening 
prokMSA_id:29878 Helicobacter sp. 'hamster B' 
prokMSA_id:30026 Helicobacter cinaedi isolate 30365 
prokMSA_id:31244 Helicobacter sp. MIT 98-1705 
prokMSA_id:32695 Helicobacter sp. 'Flexispira taxon 8' 
prokMSA_id:32900 Helicobacter sp. MIT 95-234-6 
prokMSA_id:34144 Helicobacter sp. MIT 99-5501 
prokMSA_id:34354 Helicobacter sp. ABHU4stomsp 
prokMSA_id:36371 Helicobacter sp. MIT 98-6070 
prokMSA_id:37859 Helicobacter cinaedi strain CCUG 33804 
prokMSA_id:38896 Helicobacter sp. isolate 3028 AJ249856
prokMSA_id:39557 Helicobacter rappini W.Tee-Bat 
prokMSA_id:40721 Helicobacter rappini strain H 157 S 
prokMSA_id:41542 Helicobacter sp. isolate 964 AJ249858
prokMSA_id:44759 Helicobacter cinaedi isolate 30314 
prokMSA_id:46045 Helicobacter bilis strain HRI6caefr 
prokMSA_id:47586 Helicobacter bilis strain HRI7stomfr 
prokMSA_id:48498 Helicobacter sp. UNSW1.7sp 
prokMSA_id:49270 Helicobacter cinaedi isolate 31111 
prokMSA_id:49662 Helicobacter sp
prokMSA_id:49754 Helicobacter sp. strain MZ 640285
prokMSA_id:50875 Helicobacter hepaticus 
prokMSA_id:52155 Helicobacter sp. UNSW3SBsp 
prokMSA_id:53074 Helicobacter cinaedi isolate 30893 
prokMSA_id:56169 Helicobacter cinaedi 
prokMSA_id:60772 Flexispira rappini 
prokMSA_id:68999 Helicobacter sp. 'Flexispira taxon 2' 
prokMSA_id:70150 Helicobacter sp. GOSH AF362544
prokMSA_id:70187 Helicobacter sp. UNSWMCSp1 AF054579
prokMSA_id:71120 Helicobacter rappini strain 2 SU AY034818
prokMSA_id:72874 Helicobacter hepaticus AJ007931
prokMSA_id:81166 Helicobacter sp. MIT 01-5529B 
prokMSA_id:82216 Helicobacter sp. MIT 02-5519C 
prokMSA_id:82242 Helicobacter sp. MIT 01-5529A 
prokMSA_id:89285 Helicobacter hepaticus ATCC 51449 section 4 of 6 of the comp
2.28.5.1.1.897 OTU 4 seqs
prokMSA_id:11014 Helicobacter mustelae str. 91-292-E1A Fox. M88156
prokMSA_id:11016 Helicobacter suncus str. Kaz-2
prokMSA_id:11057 Helicobacter mustelae str. Fox R85-13-6 ATCC 43772 . M35048
prokMSA_id:49735 Helicobacter sp. MIT 99-5507 
2.28.5.1.1.898 OTU 1 seq
prokMSA_id:49918 Helicobacter rappini strain 1 SU 
2.28.5.1.1.899 OTU 1 seq
prokMSA_id:47656 Helicobacter sp. isolate 2634
2.28.5.1.1.900 OTU 20 seqs
prokMSA_id:10974 Helicobacter sp. AF057163
prokMSA_id:10999 "Gastrospirillum hominis" str. 2. L10080
prokMSA_id:11002 "Gastrospirillum hominis" str. clone G1A1; isolate 1. L10079
prokMSA_id:11003 Helicobacter suis
prokMSA_id:11051 Helicobacter acinonychis str. Eaton 90-1908-3 ATCC 51104. M8
prokMSA_id:11077 Helicobacter acinonychis str. Eaton 90-119-3 CCUG 29263 . M8
prokMSA_id:55918 Helicobacter heilmannii strain CM2 
prokMSA_id:64305 Helicobacter heilmannii strain RM2 
prokMSA_id:64306 Helicobacter heilmannii strain P2 
prokMSA_id:64307 Helicobacter heilmannii strain RM1 
prokMSA_id:64310 Helicobacter heilmannii strain P5 
prokMSA_id:64311 Helicobacter heilmannii strain P3 
prokMSA_id:64312 Helicobacter heilmannii strain HU2 
prokMSA_id:64315 Helicobacter heilmannii strain HU1 
prokMSA_id:64316 Helicobacter heilmannii strain MM2 
prokMSA_id:64324 Helicobacter heilmannii strain HU4 
prokMSA_id:64325 Helicobacter heilmannii strain HU3 
prokMSA_id:64328 Helicobacter heilmannii strain HU5 
prokMSA_id:71558 Helicobacter heilmannii strain P4 AF506790
prokMSA_id:72960 Helicobacter heilmannii strain BC1 AF506772
2.28.5.1.1.901 OTU 14 seqs
prokMSA_id:10966 Helicobacter bizzozeronii CCUG 35045
prokMSA_id:10967 Helicobacter felis str. Dog-1
prokMSA_id:10969 Helicobacter heilmannii str. AF53. Y18028
prokMSA_id:11026 Helicobacter salomonis str. Inkinen CCUG 37845 . U89351
prokMSA_id:11027 Helicobacter felis str. 937-12
prokMSA_id:11028 Helicobacter felis str. 390-9. AF103880
prokMSA_id:11029 Helicobacter felis str. 144-10
prokMSA_id:11030 Helicobacter felis str. 1136-7
prokMSA_id:11031 Helicobacter bizzozeronii str. 865-2. AF103883
prokMSA_id:11032 Helicobacter felis str. Dog-2 Eaton 2301. U51871
prokMSA_id:11033 Helicobacter felis str. Dog-3 Eaton 1602. U51872
prokMSA_id:11036 Helicobacter felis str. DS3. M37643
prokMSA_id:47191 Helicobacter bizzozeronii 
prokMSA_id:71602 Helicobacter heilmannii strain AD1 AF506770
2.28.5.1.1.902 OTU 1 seq
prokMSA_id:10958 Helicobacter pylori str. MC123
2.28.5.1.2 WLN.SUCCINOGENES_SUBGROUP 7 seqs
2.28.5.1.2.903 OTU 7 seqs
prokMSA_id:11090 Wolinella succinogenes str. 602W FDC ATCC 29543 . M88159
prokMSA_id:11091 Wolinella succinogenes str. 602W FDC NCTC 11488
prokMSA_id:11092 Wolinella succinogenes str. 602W FDC ATCC 29543 . M26636
prokMSA_id:26106 Wolinella succinogenes 
prokMSA_id:29152 Wolinella succinogenes 
prokMSA_id:93521 Wolinella succinogenes complete genome; segment 1/7
prokMSA_id:93903 Wolinella succinogenes complete genome
2.28.5.3 CAMPYLOBACTER_GROUP 92 seqs
2.28.5.3.1 AOB.CRYAEROPHILUS_SUBGROUP 32 seqs
2.28.5.3.1.904 OTU 12 seqs
prokMSA_id:11158 Arcobacter butzleri CCUG 10373. L14626
prokMSA_id:11161 Arcobacter skirrowii str. 449/80 CCUG 10374 . L14625
prokMSA_id:11169 clone T24
prokMSA_id:17190 epsilon 1065 
prokMSA_id:29260 clone Car13a 
prokMSA_id:35496 epsilon 1032 
prokMSA_id:36312 epsilon 1067 
prokMSA_id:36386 Arcobacter butzleri 
prokMSA_id:61870 epsilon clone R103-B70 
prokMSA_id:66095 epsilon clone:KB49
prokMSA_id:74180 HT-1R AF024508
prokMSA_id:81568 clone SB74 
2.28.5.3.1.905 OTU 20 seqs
prokMSA_id:11164 Arcobacter cryaerophilus ATCC 49615. U25805
prokMSA_id:11165 Arcobacter cryaerophilus CCUG 17801 . L14624
prokMSA_id:11166 clone T31
prokMSA_id:11167 clone T81
prokMSA_id:11168 clone T95. Z93998
prokMSA_id:11170 clone T18
prokMSA_id:11171 clone T55. Z94001
prokMSA_id:11172 clone T31
prokMSA_id:11173 clone T40. Z94003
prokMSA_id:11174 clone T43
prokMSA_id:11179 Arcobacter nitrofigilis CCUG 15893 . L14627
prokMSA_id:11180 str. BD1-29
prokMSA_id:11183 str. JTB360
prokMSA_id:24487 epsilon 1053 AB030593
prokMSA_id:30435 epsilon MERTZ_0CM_367 
prokMSA_id:35924 epsilon 1006 
prokMSA_id:46625 sp. strain MR25H 
prokMSA_id:48714 epsilon MERTZ_0CM_34 
prokMSA_id:81419 clone SB129 
prokMSA_id:96366 epsilon clone AT-pp13 
2.28.5.3.2 SFS.BARNESII_SUBGROUP 6 seqs
2.28.5.3.2.906 OTU 1 seq
prokMSA_id:11194 Sulfurospirillum BURTON-15
2.28.5.3.2.907 OTU 2 seqs
prokMSA_id:11190 Sulfurospirillum barnesii str. SES-3
prokMSA_id:66178 clone IIB-25
2.28.5.3.2.908 OTU 3 seqs
prokMSA_id:40099 epsilon 1014 
prokMSA_id:66096 epsilon clone:KB21 AB074956
prokMSA_id:66190 clone IA-22
2.28.5.3.4 CAM.FETUS_SUBGROUP 54 seqs
2.28.5.3.4.909 OTU 29 seqs
prokMSA_id:11193 Sulfurospirillum arcachonense str. F1F6 DSMZ 9755
prokMSA_id:11214 Campylobacter jejuni subsp. jejuni str. TGH 9011 ATCC 43431
prokMSA_id:11223 Campylobacter jejuni subsp. doylei CCUG 24567 . L14630
prokMSA_id:11243 Campylobacter coli str. VC80; 1407 ATCC 33559 . M59073
prokMSA_id:11244 Campylobacter lari str. VC187; WRI 3034/77 CCUG 23947. L0431
prokMSA_id:11249 Campylobacter coli str. 1407 CCUG 11283 . L04312
prokMSA_id:11253 Campylobacter coli str. RMIT32A CCUG 33450 . L19738
prokMSA_id:11254 Campylobacter sp. CCUG 18267. L14631
prokMSA_id:11256 Campylobacter jejuni subsp. jejuni ATCC 33560 . M59298
prokMSA_id:11257 Campylobacter jejuni subsp. jejuni CCUG 11284 . L04315
prokMSA_id:11258 Campylobacter jejuni subsp. doylei str. SSI 5384-98. Y19244
prokMSA_id:25013 of campylobacter jejuni 
prokMSA_id:49562 Campylobacter jejuni complete genome
prokMSA_id:54599 Campylobacter lari genes ITS region and 23S and complete str
prokMSA_id:55836 Campylobacter jejuni strain H99/240 
prokMSA_id:57373 Campylobacter lari strain LMG 14338 
prokMSA_id:57374 Campylobacter jejuni strain B99/206 
prokMSA_id:57375 Campylobacter lari strain LMG 7607 
prokMSA_id:57376 Campylobacter jejuni strain B99/224 
prokMSA_id:57377 Campylobacter jejuni strain LMG 9243 
prokMSA_id:57378 Campylobacter jejuni strain LMG 9217 
prokMSA_id:57379 Campylobacter coli strain B99/131 
prokMSA_id:57380 Campylobacter coli strain H99/155 
prokMSA_id:57381 Campylobacter coli strain H99/119 
prokMSA_id:57382 Campylobacter coli strain LMG 15884 
prokMSA_id:57383 Campylobacter coli strain LMG 15883 
prokMSA_id:57384 Campylobacter coli strain LMG 9220 
prokMSA_id:63933 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genom
prokMSA_id:74490 Campylobacter lari strain LMG 11760 
2.28.5.3.4.910 OTU 2 seqs
prokMSA_id:11209 Campylobacter gracilis str. WAL 6989 ATCC 33236
prokMSA_id:999991 SYN Campylobacter gracilis
2.28.5.3.4.911 OTU 9 seqs
prokMSA_id:11199 Campylobacter hyointestinalis ATCC 35217 . M65010
prokMSA_id:11200 Campylobacter hyointestinalis subsp. hyointestinalis str. 04
prokMSA_id:11201 Campylobacter hyointestinalis subsp. hyointestinalis str. 09
prokMSA_id:11202 Campylobacter hyointestinalis subsp. hyointestinalis NCTC 11
prokMSA_id:11203 Campylobacter hyointestinalis subsp. hyointestinalis str. SV
prokMSA_id:11208 Campylobacter hyointestinalis NADC 2006. M65009
prokMSA_id:64355 Campylobacter hyointestinalis strain H00/108 
prokMSA_id:69901 Campylobacter fetus MGH 97-2126 AF219233
prokMSA_id:70687 Campylobacter hyointestinalis 
2.28.5.3.4.912 OTU 10 seqs
prokMSA_id:11221 Campylobacter showae CCUG 11641. L06975
prokMSA_id:11224 Campylobacter rectus CCUG 19168. L06973
prokMSA_id:11231 Campylobacter curvus str. C10 Etoh. L06976
prokMSA_id:11241 Campylobacter rectus str. Tanner 371 ATCC 33238 . L04317
prokMSA_id:11246 Campylobacter curvus ATCC 35224 . L04313
prokMSA_id:11248 Campylobacter showae CCUG 3054. L06974
prokMSA_id:57353 Campylobacter showae strain LMG 12636 
prokMSA_id:57354 Campylobacter curvus strain LMG 13936 
prokMSA_id:57357 Campylobacter curvus strain LMG 11127 
prokMSA_id:57358 Campylobacter curvus strain LMG 11034 
2.28.5.3.4.913 OTU 4 seqs
prokMSA_id:11230 Campylobacter upsaliensis CCUG 14913 . L14628
prokMSA_id:11247 Campylobacter helveticus NCTC 12470
prokMSA_id:55374 Campylobacter upsaliensis strain G1104 
prokMSA_id:60770 Campylobacter upsaliensis strain LMG 8850 
2.29 FUSOBACTERIA_AND_RELATIVES 37 seqs
2.29.2 PRG.MODESTUM_SUBGROUP 2 seqs
2.29.2.914 OTU 2 seqs
prokMSA_id:34833 Fusobacteria MERTZ_0CM_274 
prokMSA_id:76867 Fusobacteria Ko711 AF550592
2.29.3 CETOBACTERIUM.CETI 1 seq
2.29.3.915 OTU 1 seq
prokMSA_id:11302 Cetobacterium ceti str. M-3333 NCFB 3026
2.29.5 FUSOBACTERIA_GROUP 34 seqs
2.29.5.916 OTU 3 seqs
prokMSA_id:11305 Fusobacterium necrophorum str. FnS-1; biotype AB. X74407
prokMSA_id:11309 Fusobacterium necrophorum str. FnS40; biotype B
prokMSA_id:34266 Fusobacterium equorum strain horse
2.29.5.917 OTU 19 seqs
prokMSA_id:11317 Fusobacterium naviforme str. DMS 20699 NCTC 11464
prokMSA_id:20351 Fusobacterium sp. oral clone CZ006 
prokMSA_id:30752 Fusobacterium sp. oral clone AJ050 
prokMSA_id:34791 Leptotrichia-like sp. oral clone BB135 
prokMSA_id:41933 Fusobacterium sp. oral clone EU021 
prokMSA_id:46013 Fusobacterium sp. clone BS019 
prokMSA_id:52269 Fusobacterium sp. oral clone CY024 
prokMSA_id:58280 Fusobacterium nucleatum 
prokMSA_id:59567 Fusobacterium sp. oral clone EX162 
prokMSA_id:59571 Fusobacterium sp. oral clone EX123 
prokMSA_id:68347 Fusobacterium nucleatum E9_12 subphylotype-E1 oral isolate 
prokMSA_id:72547 Fusobacterium sp. oral clone BS011 AF432130
prokMSA_id:79662 Fusobacterium nucleatum subsp. vincentii ATCC 49256 Contig03
prokMSA_id:80083 Fusobacterium nucleatum subsp. vincentii ATCC 49256 Contig03
prokMSA_id:80842 Fusobacterium nucleatum subsp. vincentii ATCC 49256 Contig03
prokMSA_id:86995 Fusobacterium genomosp. C1 
prokMSA_id:94529 Fusobacterium nucleatum subsp. vincentii ATCC 49256 Contig03
prokMSA_id:94655 Fusobacterium nucleatum subsp. vincentii ATCC 49256 Contig03
prokMSA_id:95128 Fusobacterium nucleatum subsp. vincentii ATCC 49256 Contig03
2.29.5.918 OTU 8 seqs
prokMSA_id:11312 Fusobacterium mortiferum ATCC 25557 . M58680
prokMSA_id:11313 Fusobacterium mortiferum ATCC 25557 . NONE
prokMSA_id:11319 Clostridium rectum NCIMB 10651 . X77850
prokMSA_id:74143 Leptotrichia sp. clone DS049 AF366272
prokMSA_id:77649 Fusobacterium nucleatum subsp. canifelium strain RMA 11693 
prokMSA_id:77942 Fusobacterium nucleatum subsp. canifelium strain RMA 1036 
prokMSA_id:78038 Fusobacterium nucleatum subsp. canifelium strain RMA 12701 
prokMSA_id:78238 Fusobacterium nucleatum subsp. canifelium strain RMA 12708 
2.29.5.919 OTU 4 seqs
prokMSA_id:11304 Fusobacterium nucleatum subsp. nucleatum ATCC 25586 . M58683
prokMSA_id:11322 Fusobacterium varium ATCC 8501 . M58686
prokMSA_id:34568 Fusobacterium nucleatum subsp. nucleatum AJ133496
prokMSA_id:64396 Fusobacterium nucleatum subsp. nucleatum ATCC 25586 complete
2.30 GRAM_POSITIVE_BACTERIA 3046 seqs
2.30.1 HIGH_G+C_BACTERIA 1143 seqs
2.30.1.5 ATOPOBIUM_GROUP 4 seqs
2.30.1.5.2 ATP.MINUTUM_SUBGROUP 4 seqs
2.30.1.5.2.920 OTU 2 seqs
prokMSA_id:11378 fossor ATCC 43386 . L34620
prokMSA_id:11379 JCM 9981
2.30.1.5.2.921 OTU 2 seqs
prokMSA_id:11371 Eggerthella lenta DSM 2243 . NONE
prokMSA_id:16304 Eggerthella lenta 
2.30.1.6 ACIDIMICROBIUM_GROUP 22 seqs
2.30.1.6.2 A.FERROOXIDANS_SUBGROUP 22 seqs
2.30.1.6.2.922 OTU 2 seqs
prokMSA_id:18089 clone CR99-24-52 
prokMSA_id:19128 clone CR99-24-11 
2.30.1.6.2.923 OTU 17 seqs
prokMSA_id:16321 clone CRP99-11 
prokMSA_id:19160 clone CR98-5-50 
prokMSA_id:19419 clone CR98-24-24 
prokMSA_id:21407 clone HTG6 AF418963
prokMSA_id:29485 clone CR98-35-07 
prokMSA_id:29723 clone CR99-24-08 
prokMSA_id:36803 clone CR98-24-01 
prokMSA_id:36964 clone CR98-5-41 
prokMSA_id:37762 clone CR99-24-55 
prokMSA_id:39516 clone HTG5 
prokMSA_id:42717 clone CR98-5-44 
prokMSA_id:44721 clone CR99-24-74 
prokMSA_id:49463 clone CR99-35-61 
prokMSA_id:50321 clone CRP99-29 
prokMSA_id:52257 clone CRP99-30 
prokMSA_id:52917 clone CRD99-34 
prokMSA_id:98193 actinobacterium clone NM3
2.30.1.6.2.924 OTU 1 seq
prokMSA_id:42729 clone CR99-24-44 
2.30.1.6.2.925 OTU 1 seq
prokMSA_id:11403 DA079 
2.30.1.6.2.926 OTU 1 seq
prokMSA_id:11419 Acidimicrobium ferrooxidans str. ICP DSM 10331
2.30.1.7 FRANKIA_GROUP 158 seqs
2.30.1.7.1 GDP.OBSCURUS_ASSEMBLAGE 122 seqs
2.30.1.7.1.927 OTU 90 seqs
prokMSA_id:11448 Microsphaera multipartita str. Y-104 JCM 9543
prokMSA_id:13040 Mycobacterium heidelbergense str. 2554/91 ATCC 51253 . AJ000
prokMSA_id:13041 Mycobacterium heidelbergense. X70960
prokMSA_id:13042 Mycobacterium 'MCRO 33' str. MCRO 33
prokMSA_id:13043 Mycobacterium sp. str. IWGMT 90174
prokMSA_id:13058 Mycobacterium ulcerans. X58954
prokMSA_id:13059 Mycobacterium ulcerans str. Borstel 10564/70. X88926
prokMSA_id:13061 Mycobacterium avium subsp. paratuberculosis ATCC 19698 . X52
prokMSA_id:13070 Mycobacterium buckleii
prokMSA_id:13071 Mycobacterium tuberculosis str. H37/Rv
prokMSA_id:13078 Mycobacterium malmoense str. Mo 816 ATCC 29571 . X52930
prokMSA_id:13079 Mycobacterium malmoense str. RV423C
prokMSA_id:13082 Mycobacterium intracellulare str. serovar 4 ATCC 35767
prokMSA_id:13090 Mycobacterium simiae ATCC 25275 . X52931
prokMSA_id:13091 Mycobacterium sp. str. IWGMT 90143
prokMSA_id:13102 Mycobacterium ulcerans. Z13990
prokMSA_id:13108 Mycobacterium lentiflavum str. 89-446 ATCC 51988
prokMSA_id:13110 Mycobacterium sp. str. MCRO 18. X93029
prokMSA_id:13111 Mycobacterium sp. str. IWGMT 90210
prokMSA_id:13119 Mycobacterium n. sp. 'Fuerth 1999' str. 01.22.181
prokMSA_id:13121 Mycobacterium scrofulaceum ATCC 19981 . X52924
prokMSA_id:13123 Mycobacterium sp. str. IWGMT 90160
prokMSA_id:13124 Mycobacterium sp. str. IWGMT 90236
prokMSA_id:13131 Mycobacterium sp. str. IWGMT 90018
prokMSA_id:13133 Mycobacterium avium subsp. avium str. chester DSM 43216. X52
prokMSA_id:13139 Mycobacterium kansasii str. SN 502 DSM 43224. X15916
prokMSA_id:13152 Mycobacterium intracellulare str. SN 424 ATCC 15985. X52927
prokMSA_id:13165 Mycobacterium haemophilum
prokMSA_id:13167 Mycobacterium bohemicum
prokMSA_id:13177 Mycobacterium tuberculosis
prokMSA_id:13178 Mycobacterium tuberculosis subsp. caprae str. gM-1
prokMSA_id:13182 Mycobacterium bovis str. BCG
prokMSA_id:13189 Mycobacterium gordonae str. P-15 ATCC 14470 . X52923
prokMSA_id:13195 Mycobacterium intracellulare str. serovar 12 ATCC 35762
prokMSA_id:13202 Mycobacterium marinum. X52920
prokMSA_id:13204 Mycobacterium interjectum str. 4185/92 DSM 44064
prokMSA_id:13209 Mycobacterium sp. str. IWGMT 90100
prokMSA_id:13210 Mycobacterium sp. str. IWGMT 90203
prokMSA_id:13211 Mycobacterium sp. str. IWGMT 90093
prokMSA_id:13213 Mycobacterium szulgai ATCC 35799 . X52926
prokMSA_id:13220 Mycobacterium intracellulare str. serovar 7 ATCC 35847
prokMSA_id:13227 Mycobacterium haemophilum
prokMSA_id:13230 Mycobacterium gastri str. W-417 ATCC 15754 . X52919
prokMSA_id:13232 Mycobacterium avium subsp. avium str. chester DSM 43216
prokMSA_id:13242 Mycobacterium intracellulare str. serovar 18 ATCC 35770
prokMSA_id:13262 Mycobacterium intermedium
prokMSA_id:13263 Mycobacterium sp. str. IWGMT 90161
prokMSA_id:18950 Mycobacterium lacus 
prokMSA_id:19386 Mycobacterium avium 
prokMSA_id:19458 Mycobacterium abscessus 
prokMSA_id:19621 Mycobacterium gastri 
prokMSA_id:23068 Mycobacterium sp. M175 
prokMSA_id:29667 Mycobacterium abscessus strain MB849
prokMSA_id:31099 1 from patent US 5985569
prokMSA_id:33483 Mycobacterium chelonae 
prokMSA_id:37469 Mycobacterium chelonae strain MB300
prokMSA_id:37486 Mycobacterium kansasii 
prokMSA_id:38629 Mycobacterium scrofulaceum 
prokMSA_id:42375 Mycobacterium tuberculosis H37Rv complete genome
prokMSA_id:47839 Mycobacterium triplex 
prokMSA_id:49893 Mycobacterium tuberculosis H37Rv complete genome; segment 58
prokMSA_id:50858 Mycobacterium marinum 
prokMSA_id:52725 Mycobacterium microti 
prokMSA_id:52968 Mycobacterium bohemicum and internal transcribed spacer 1 IT
prokMSA_id:54160 Mycobacterium bohemicum and internal transcribed spacer 1 IT
prokMSA_id:54279 Mycobacterium tuberculosis CDC1551 complete genome
prokMSA_id:54449 Mycobacterium palustre and internal transcribed spacer 1 ITS
prokMSA_id:64868 Mycobacterium avium Myc373 -23S internal transcribed spacer 
prokMSA_id:66700 Mycobacterium malmoense ; internal transcribed spacer comple
prokMSA_id:69220 Mycobacterium marinum strain ATCC 927 
prokMSA_id:69661 Mycobacterium marinum strain cyprinum CC240299 
prokMSA_id:69678 Mycobacterium marinum strain eilaticum DL240490 
prokMSA_id:72489 Mycobacterium marinum strain hellenicum DL045 
prokMSA_id:73622 Mycobacterium chelonae strain MB834 AJ416941
prokMSA_id:74742 Mycobacterium sp. MU99402 
prokMSA_id:77589 Mycobacterium intracellulare AJ536036
prokMSA_id:77825 Mycobacterium kansasii 
prokMSA_id:78097 Mycobacterium abscessus 
prokMSA_id:78264 Mycobacterium tuberculosis 
prokMSA_id:79404 Mycobacterium sp. HSC 1852 
prokMSA_id:81784 Mycobacterium chimerae and ITS1 strain FI-0169T
prokMSA_id:85375 Mycobacterium sp. SA394 and ITS1 isolate SA394
prokMSA_id:85394 Mycobacterium sp. YM12 
prokMSA_id:89294 Mycobacterium sp. HSC2034 
prokMSA_id:91680 Mycobacterium parascrofulaceum strain BAA-614 
prokMSA_id:92964 Mycobacterium gordonae strain agha3
prokMSA_id:93004 Mycobacterium tilburgii 
prokMSA_id:93107 Mycobacterium sherrisii 
prokMSA_id:93212 Mycobacterium nebraskiae complete 
prokMSA_id:93989 Mycobacterium sp. LC6 complete 
2.30.1.7.1.928 OTU 1 seq
prokMSA_id:91122 clone L5-65 
2.30.1.7.1.929 OTU 31 seqs
prokMSA_id:11425 Blastococcus aggregatus ATCC 25902
prokMSA_id:11427 str. G1S leachate of a landfill Vancouver Canada
prokMSA_id:11438 str. G6 white marble Athens Greece. X92366
prokMSA_id:12853 Micromonospora echinospora subsp. echinospora DSM 43816
prokMSA_id:12900 Dactylosporangium matsuzakiense DSM 43810 . X93193
prokMSA_id:18910 Blastococcus sp. BC448 
prokMSA_id:22938 Blastococcus sp. BC412 
prokMSA_id:25875 glc24 
prokMSA_id:25997 glc21 
prokMSA_id:28842 clone T26-10 
prokMSA_id:29816 Nocardioides sp. 1169 
prokMSA_id:31131 sp. sbr-gs19 
prokMSA_id:31808 Maize root ZmrIs35 
prokMSA_id:39506 glc22 
prokMSA_id:40121 Blastococcus aggregatus strain DSM 4725T AJ430193
prokMSA_id:42443 clone CR99-7-30 
prokMSA_id:43433 Blastococcus sp. BC517 
prokMSA_id:46074 Blastococcus sp. BC512 
prokMSA_id:47168 clone Ebpr19 
prokMSA_id:48817 Maize root ZmrIs16 
prokMSA_id:49583 Modestobacter multiseptatus 
prokMSA_id:74508 Nocardioides sp. 1185c 
prokMSA_id:74541 Blastococcus sp. BC521 
prokMSA_id:74739 glc11 
prokMSA_id:82786 Micromonospora sp. N0162 
prokMSA_id:83827 Micromonospora sp. N0179 
prokMSA_id:85256 Micromonospora sp. N0155 
prokMSA_id:85374 Micromonospora sp. N0158 
prokMSA_id:85857 Micromonospora sp. N0157 
prokMSA_id:87823 Micromonospora sp. EN43 AY291589
prokMSA_id:90690 Streptomyces sp. FXJ04 
2.30.1.7.2 SCH.POLYMORPHA_SUBGROUP 21 seqs
2.30.1.7.2.930 OTU 15 seqs
prokMSA_id:28810 clone CRP99-47 
prokMSA_id:29523 clone CR99-7-45 
prokMSA_id:51723 clone CRD99-19 
prokMSA_id:73246 beta clone 08 AF361201
prokMSA_id:74291 firmicute clone PRD01a002B AF289150
prokMSA_id:88901 Actinobacterium MWH-VicMua1 isolate MWH-VicMua1
prokMSA_id:90772 Actinobacterium MWH-Dar1 isolate MWH-Dar1
prokMSA_id:96124 actinobacterium clone S10
prokMSA_id:96328 actinobacterium clone R1
prokMSA_id:96421 actinobacterium clone D2 AJ575538
prokMSA_id:96557 actinobacterium clone N6
prokMSA_id:96614 actinobacterium clone R7
prokMSA_id:97092 actinobacterium clone N1
prokMSA_id:97560 actinobacterium clone D3
prokMSA_id:98654 actinobacterium clone W1
2.30.1.7.2.931 OTU 1 seq
prokMSA_id:11450 str. rJ14
2.30.1.7.2.932 OTU 5 seqs
prokMSA_id:45664 FukuS81 
prokMSA_id:96214 actinobacterium clone SW10
prokMSA_id:96584 actinobacterium clone S8 AJ575509
prokMSA_id:97218 actinobacterium clone NM1
prokMSA_id:97256 actinobacterium clone SW9
2.30.1.7.4 FRANKIA_SUBGROUP 15 seqs
2.30.1.7.4.933 OTU 2 seqs
prokMSA_id:37339 Saltmarsh clone LCP-68 
prokMSA_id:46349 actinobacterium MERTZ_21CM_170 
2.30.1.7.4.934 OTU 2 seqs
prokMSA_id:11495 Frankia sp
prokMSA_id:11630 Frankia sp
2.30.1.7.4.935 OTU 1 seq
prokMSA_id:51617 actinomycete clone SUBT-5 
2.30.1.7.4.936 OTU 1 seq
prokMSA_id:41130 Frankia sp. MgI5 isolate MgI5
2.30.1.7.4.937 OTU 1 seq
prokMSA_id:42219 Frankia sp. Sn5-8 isolate Sn5-8
2.30.1.7.4.938 OTU 5 seqs
prokMSA_id:11538 Frankia Cea5.1 str. Cea5.1
prokMSA_id:12184 Agromyces mediolanus str. CNF 186; K. Aoki AN-15 JCM 9632. D
prokMSA_id:88885 Nocardia nova strain ATCC 33726T 
prokMSA_id:92485 Nocardia pseudobrasiliensis 
prokMSA_id:95587 Permafrost DT-IIK15 
2.30.1.7.4.939 OTU 1 seq
prokMSA_id:11620 Frankia sp
2.30.1.7.4.940 OTU 1 seq
prokMSA_id:11621 str. Alnus rhizosphere soil amplicon
2.30.1.7.4.941 OTU 1 seq
prokMSA_id:11622 str. Alnus rhizosphere soil amplicon
2.30.1.8 STREPTOMYCES_SUBDIVISION 232 seqs
2.30.1.8.1 STREPTOMYCES_AND_RELATIVES 87 seqs
2.30.1.8.1.2 STM.SCABIEI_SUBGROUP 12 seqs
2.30.1.8.1.2.942 OTU 1 seq
prokMSA_id:33286 Streptomyces ushikuensis 
2.30.1.8.1.2.944 OTU 1 seq
prokMSA_id:77075 Streptomyces sp. GE 90852 strain GE 90852
2.30.1.8.1.2.945 OTU 1 seq
prokMSA_id:91841 K2-36A 
2.30.1.8.1.2.946 OTU 1 seq
prokMSA_id:24460 Streptomyces griseochromogenes strain DSM 40499
2.30.1.8.1.2.947 OTU 1 seq
prokMSA_id:11726 Streptomyces sp. str. 91-Sy-13
2.30.1.8.1.2.948 OTU 1 seq
prokMSA_id:11728 Streptomyces sp. str. CFBP4530
2.30.1.8.1.2.949 OTU 1 seq
prokMSA_id:11743 Streptomyces sp. str. CFBP4509
2.30.1.8.1.2.950 OTU 1 seq
prokMSA_id:11747 Streptomyces scabies str. 364
2.30.1.8.1.2.951 OTU 1 seq
prokMSA_id:11754 Streptomyces galbus
2.30.1.8.1.2.952 OTU 1 seq
prokMSA_id:32361 Streptomyces sp. S78 
2.30.1.8.1.2.953 OTU 1 seq
prokMSA_id:27887 Streptomyces viridochromogenes 
2.30.1.8.1.2.954 OTU 1 seq
prokMSA_id:26928 Streptomyces sp. KN-0647 
2.30.1.8.1.3 KTS.SETAE_SUBGROUP 44 seqs
2.30.1.8.1.3.955 OTU 1 seq
prokMSA_id:11816 Kitasatospora cheerisanensis str. YC75
2.30.1.8.1.3.956 OTU 16 seqs
prokMSA_id:11789 Kitasatospora phosalacinea str. KA-338 JCM 3340
prokMSA_id:11790 Kitasatospora brunnea IFO 14627
prokMSA_id:11792 Kitasatospora streptosporus IFO 14362
prokMSA_id:11795 Kitasatospora paracochleata str. 14769
prokMSA_id:11796 Kitasatospora griseola str. AM-9660 JCM 3339
prokMSA_id:11797 Kitasatospora melanogena JCM 3337
prokMSA_id:11823 Kitasatospora mediocidica IFO 14789
prokMSA_id:23352 Kitasatospora sp. OM-5023 AB022879
prokMSA_id:24904 Kitasatospora cochleata strain IFO 14768 
prokMSA_id:26737 Kitasatospora sp. SK-3406 AB022876
prokMSA_id:32322 Kitasatospora cochleata AB022871
prokMSA_id:36266 Kitasatospora sp. PU22869 
prokMSA_id:42735 Streptomyces sp. PR4.0307 
prokMSA_id:45323 Kitasatospora griseola AB022870
prokMSA_id:50005 Kitasatospora phosalacinea 
prokMSA_id:51815 Kitasatospora sp. SK-3255 AB022875
2.30.1.8.1.3.957 OTU 1 seq
prokMSA_id:37181 Streptomyces lateritius 
2.30.1.8.1.3.958 OTU 1 seq
prokMSA_id:36230 Streptomyces beijiangensis 
2.30.1.8.1.3.959 OTU 1 seq
prokMSA_id:11780 Streptomyces ASSF13 str. ASSF13
2.30.1.8.1.3.960 OTU 1 seq
prokMSA_id:46811 Streptomyces sp. 1705a 
2.30.1.8.1.3.961 OTU 1 seq
prokMSA_id:39618 Streptomyces fulvoviridis 
2.30.1.8.1.3.962 OTU 1 seq
prokMSA_id:33773 Streptomyces sp. EF-16 
2.30.1.8.1.3.963 OTU 16 seqs
prokMSA_id:12693 str. AS2987. AF060672
prokMSA_id:13520 Rhodococcus rhodnii str. N 443 DSM 43337. X80622
prokMSA_id:13521 Rhodococcus rhodnii str. N 445 DSM 43336
prokMSA_id:13522 Rhodococcus rhodnii str. N 444 DSM 43959
prokMSA_id:20285 Streptomyces sp. EF-79 
prokMSA_id:23782 Streptomyces sp. B66 risbosomal AF332542
prokMSA_id:27954 Streptomyces sp. R25 
prokMSA_id:36329 Streptomyces sp. 1733 
prokMSA_id:81737 Nocardia sp. DSM 43396 complete 
prokMSA_id:84268 Nocardia sp. IFM 0430 
prokMSA_id:84390 Nocardia sp. IFM 0583 
prokMSA_id:84484 Nocardia sp. IFM 0299 
prokMSA_id:86269 Nocardia puris strain IMMIB R-145T
prokMSA_id:87674 Streptomyces sp. EN22 AY291590
prokMSA_id:88883 Streptomyces sp. FXJ23 
prokMSA_id:90076 Streptomyces sp. FXJ14 
2.30.1.8.1.3.964 OTU 1 seq
prokMSA_id:26229 Streptomyces sp. 1707 
2.30.1.8.1.3.965 OTU 1 seq
prokMSA_id:88020 Streptomyces sp. YIM 80038 
2.30.1.8.1.3.966 OTU 1 seq
prokMSA_id:17191 Streptomyces venezuelae 
2.30.1.8.1.3.967 OTU 1 seq
prokMSA_id:89816 Streptomyces sp. NRRL 30566 
2.30.1.8.1.3.968 OTU 1 seq
prokMSA_id:38469 Streptomyces kathirae 
2.30.1.8.1.4 STM.BIKINIENSIS_SUBGROUP 2 seqs
2.30.1.8.1.4.969 OTU 1 seq
prokMSA_id:40593 soil clone 1056-2 
2.30.1.8.1.4.970 OTU 1 seq
prokMSA_id:11833 Streptomyces sp. A36 
2.30.1.8.1.8 STM.ARMENIACUS_SUBGROUP 12 seqs
2.30.1.8.1.8.971 OTU 4 seqs
prokMSA_id:11841 Streptomyces armeniacus JCM 3070
prokMSA_id:11842 Streptomyces armeniacus JCM 3070
prokMSA_id:11843 Streptomyces armeniacus JCM 3070
prokMSA_id:11859 Streptomyces macrosporus DSM 41449 . Z68099
2.30.1.8.1.8.972 OTU 1 seq
prokMSA_id:39373 Streptomyces sp. 1267 
2.30.1.8.1.8.973 OTU 2 seqs
prokMSA_id:11852 Streptomyces CN732 str. CN 732
prokMSA_id:12923 str. SR 244a
2.30.1.8.1.8.974 OTU 1 seq
prokMSA_id:94790 Streptomyces halotolerans strain YIM 90017 
2.30.1.8.1.8.975 OTU 1 seq
prokMSA_id:43737 Streptomyces sp. NRRL B-1356 
2.30.1.8.1.8.976 OTU 1 seq
prokMSA_id:30701 Streptomyces cattleya 
2.30.1.8.1.8.977 OTU 1 seq
prokMSA_id:23521 Streptomyces sp. F50970 
2.30.1.8.1.8.978 OTU 1 seq
prokMSA_id:11849 Streptomyces griseocarneus DSM 40004
2.30.1.8.1.10 THERMOPHILIC_STREPTOMYCES 4 seqs
2.30.1.8.1.10.979 OTU 1 seq
prokMSA_id:68935 Streptomyces sp. A4R2 S34 
2.30.1.8.1.10.980 OTU 1 seq
prokMSA_id:24961 clone KS49 
2.30.1.8.1.10.981 OTU 1 seq
prokMSA_id:11871 Streptomyces sp. str. TB3481
2.30.1.8.1.10.982 OTU 1 seq
prokMSA_id:11880 Streptomyces thermodiastaticus JCM 4840
2.30.1.8.1.11 STM.ALBIDOFLAVUS_SUBGROUP 4 seqs
2.30.1.8.1.11.983 OTU 1 seq
prokMSA_id:78787 Streptomyces somaliensis isolate 9:3 588BP
2.30.1.8.1.11.984 OTU 1 seq
prokMSA_id:93417 Streptomyces roseoflavus strain Men-myco-93-63 
2.30.1.8.1.11.985 OTU 1 seq
prokMSA_id:33840 Streptomyces sp. AP77 
2.30.1.8.1.11.986 OTU 1 seq
prokMSA_id:11922 Streptomyces nodosus ATCC 14899
2.30.1.8.1.12 STM.COELICOLOR_SUBGROUP 9 seqs
2.30.1.8.1.12.987 OTU 1 seq
prokMSA_id:28316 Streptomyces hawaiiensis strain ISP 5042
2.30.1.8.1.12.988 OTU 1 seq
prokMSA_id:52246 Streptomyces albus subsp. albus 
2.30.1.8.1.12.989 OTU 1 seq
prokMSA_id:11930 Streptomyces ASSF15 str. ASSF15
2.30.1.8.1.12.990 OTU 1 seq
prokMSA_id:11941 Streptomyces nodosus ATCC 14899
2.30.1.8.1.12.991 OTU 1 seq
prokMSA_id:11942 Streptomyces nodosus ATCC 14899
2.30.1.8.1.12.992 OTU 1 seq
prokMSA_id:11951 Streptomyces CHR3 str. CHR3
2.30.1.8.1.12.993 OTU 1 seq
prokMSA_id:11952 Streptomyces goraiensis str. MTCC 3154
2.30.1.8.1.12.994 OTU 1 seq
prokMSA_id:87863 Streptomyces sp. T4-4 
2.30.1.8.1.12.995 OTU 1 seq
prokMSA_id:90416 Streptomyces sp. 40005 
2.30.1.8.2 ACTINOMADURA_SUBGROUP 127 seqs
2.30.1.8.2.2 THS.BISPORA_SUBGROUP 1 seq
2.30.1.8.2.2.996 OTU 1 seq
prokMSA_id:11988 Thermobispora bispora str. R51 ATCC 19993
2.30.1.8.2.4 AMD.HERBIDA_SUBGROUP 124 seqs
2.30.1.8.2.4.997 OTU 124 seqs
prokMSA_id:11991 Actinomadura echinospora IFO 14042
prokMSA_id:12014 Actinomadura formosensis str. C-36820 JCM 7474
prokMSA_id:12027 Actinomadura rugatobispora IFO 14382
prokMSA_id:12028 Actinomadura macra IFO 14102
prokMSA_id:12030 Actinomadura cremea subsp. rifamycini IFO 14183
prokMSA_id:12032 Actinomadura madurae JCM 7436
prokMSA_id:12033 Actinomadura madurae DSM 43067
prokMSA_id:12035 Actinomadura citrea IFO 14678
prokMSA_id:12036 Actinomadura verrucosospora IFO 14100
prokMSA_id:12037 Actinomadura luteofluorescens IFO 13057
prokMSA_id:12041 Actinomadura coerulea IFO 14679
prokMSA_id:12046 Actinomadura kijaniata DSM 43764
prokMSA_id:12047 Actinomadura kijaniata IFO 14229
prokMSA_id:12048 Actinomadura madurae IFO 14623 . D85468
prokMSA_id:12049 Spirillospora albida IFO 12248 . D85498
prokMSA_id:12059 Streptosporangium roseum JCM 3005
prokMSA_id:12069 Streptosporangium pseudovulgare IFO 13991
prokMSA_id:12070 Streptosporangium nondiastaticum IFO 13990
prokMSA_id:12071 Streptosporangium fragile DSM 43847
prokMSA_id:12073 Streptosporangium sp. DSM 43137
prokMSA_id:12074 str. SR 58
prokMSA_id:12076 Streptosporangium album DSM 43023
prokMSA_id:12078 Streptosporangium roseum DSM 43871
prokMSA_id:12079 Streptosporangium vulgare DSM 46133
prokMSA_id:12080 Streptosporangium 7113 str. 7113
prokMSA_id:12081 Streptosporangium vulgare subsp. "antibioticum" DSM 44112
prokMSA_id:12082 Streptosporangium roseum subsp. "incarnatum" DSM 44111
prokMSA_id:12083 Streptosporangium amethystogenes subsp. amethystogenes DSM 4
prokMSA_id:12084 Streptosporangium "rubrum" DSM 44095
prokMSA_id:12087 Streptosporangium "brasiliense" DSM 44109
prokMSA_id:12088 Streptosporangium roseum DSM 43021
prokMSA_id:12089 Streptosporangium amethystogenes DSM 46128
prokMSA_id:12090 Streptosporangium "koreanum" DSM 44110
prokMSA_id:12091 Streptosporangium longisporum DSM 43180
prokMSA_id:12092 Streptosporangium vulgare DSM 43802
prokMSA_id:12096 Streptosporangium 15110 str. 15110
prokMSA_id:12097 Streptosporangium violaceochromogenes JCM 3281
prokMSA_id:12098 Streptosporangium violaceochromogenes DSM 43872
prokMSA_id:12099 Streptosporangium violaceochromogenes DSM 43849
prokMSA_id:12100 Streptosporangium carneum DSM 44125
prokMSA_id:12101 Streptosporangium 5866 str. 5866
prokMSA_id:12102 Planomonospora parontospora subsp. parontospora IFO 13880 . 
prokMSA_id:12103 Planomonospora parontospora subsp. antibiotica JCM 3094. AB0
prokMSA_id:12104 Planomonospora venezuelensis JCM 3167
prokMSA_id:12105 Streptosporangium viridialbum DSM 43801
prokMSA_id:12106 Streptosporangium viridialbum JCM 3027
prokMSA_id:12108 Planobispora longispora IFO 13918. D85494
prokMSA_id:12109 Planobispora rosea JCM 3166. AB028654
prokMSA_id:12110 Nonomuria spiralis IFO 14097
prokMSA_id:12111 Nonomuria helvata IFO 14681
prokMSA_id:12112 Nonomuria pusilla IFO 14684
prokMSA_id:12114 Nonomuria angiospora IFO 13155
prokMSA_id:12115 Nonomuria salmonea DSM 43678
prokMSA_id:12117 Nonomuraea longicatena NRRL 15532
prokMSA_id:12118 Nonomuria salmonea IFO 14687
prokMSA_id:12119 Nonomuria ferruginea str. 487-2 IFO 14094
prokMSA_id:12120 Nonomuria polychroma IFO 14345
prokMSA_id:12121 Nonomuria fastidiosa IFO 14680
prokMSA_id:12122 Nonomuria africana IFO 14745
prokMSA_id:12123 Nonomuria roseola IFO 14685
prokMSA_id:12124 Nonomuria recticatena IFO 14525
prokMSA_id:12134 Streptosporangium corrugatum IFO 13972
prokMSA_id:12135 Streptosporangium corrugatum DSM 43316
prokMSA_id:12137 Herbidospora cretacea str. K-319 IFO 15474. D85485
prokMSA_id:12138 Microtetraspora fusca IFO 13915
prokMSA_id:12139 Microtetraspora niveoalba IFO 15239
prokMSA_id:12140 Microtetraspora glauca IFO 14761
prokMSA_id:12141 Microtetraspora glauca DSM 43311
prokMSA_id:12142 Microtetraspora glauca IFO 14761
prokMSA_id:12143 Planotetraspora mira IFO 15435
prokMSA_id:12145 Microbispora rosea subsp. rosea ATCC 33326
prokMSA_id:12146 Microbispora corallina str. DF-32. AB018046
prokMSA_id:12147 Microbispora rosea subsp. rosea ATCC 27098
prokMSA_id:12148 Microbispora rosea subsp. aerata ATCC 15448
prokMSA_id:12150 Microbispora rosea subsp. rosea JCM 3021
prokMSA_id:12151 Microbispora mesophila str. T-1 JCM 3151
prokMSA_id:12152 Microbispora rosea subsp. rosea IFO 14876
prokMSA_id:12153 Microbispora rosea subsp. rosea IFO 14041
prokMSA_id:16959 Actinomadura cremea subsp. cremea 
prokMSA_id:17513 Clavisporangium rectum AB062380
prokMSA_id:18645 Nonomuraea roseoviolacea strain:IFO 15903T
prokMSA_id:18830 Spirillospora rubra 
prokMSA_id:19369 Nonomuraea roseoviolacea strain:SF 2303 AB039960
prokMSA_id:20028 Pseudonocardiaceae str. PA83 complete 
prokMSA_id:20526 Streptosporangiaceae str. PA154 complete 
prokMSA_id:22030 Actinomadura hibisca 
prokMSA_id:22138 Actinomadura fibrosa 
prokMSA_id:22484 Actinomadura spadix 
prokMSA_id:23223 Microtetraspora malaysiensis strain:H47-7
prokMSA_id:24563 Nonomuraea rubra 
prokMSA_id:24572 Actinomadura hibisca strain DSM 44148T
prokMSA_id:25422 Nonomuraea roseoviolacea strain:IFO 14098T
prokMSA_id:25601 Thermomonospora formosensis strain IFO 14204 AB006172
prokMSA_id:26732 Actinomadura vinacea 
prokMSA_id:29010 Actinomadura yumaensis 
prokMSA_id:29049 Pseudonocardiaceae str. PA151 complete 
prokMSA_id:30118 Actinomadura umbrina 
prokMSA_id:30485 Streptosporangiaceae str. PA147 complete 
prokMSA_id:30729 Acrocarpaspora pleiomorpha AB025318
prokMSA_id:31446 Actinomadura livida 
prokMSA_id:31484 Nonomuraea roseola strain DSM 43767T
prokMSA_id:31910 Microtetraspora malaysiensis strain:Y25-12
prokMSA_id:37892 Actinomadura pelletieri 
prokMSA_id:38367 Actinomadura echinospora strain DSM 43163T
prokMSA_id:38388 Actinomadura viridis strain DSM 43175T
prokMSA_id:39421 Actinomadura formosensis strain DSM 43997T
prokMSA_id:40820 Nonomuraea recticatena strain DSM 43937T AJ404230
prokMSA_id:41992 Nonomuraea asiatica AF277196
prokMSA_id:46051 Planomonospora sphaerica 
prokMSA_id:46173 Spirillospora sp. JCM3123 
prokMSA_id:47254 Nonomuraea aurea 
prokMSA_id:49520 Microtetraspora malaysiensis strain:Y1-5-3
prokMSA_id:51116 Actinomadura latina 
prokMSA_id:51435 Actinomadura nitritigenes 
prokMSA_id:69415 actinomycete strain IFO16010 AB006175
prokMSA_id:72045 Planomonospora parontospora strain IFO13880 D85495
prokMSA_id:72465 Sebekia benihana strain NRRL 11111 AJ294350
prokMSA_id:73039 Nonomuraea terranata AF302078
prokMSA_id:73964 Planobispora longispora strain IFO13918 D85494
prokMSA_id:74555 Sebekia benihana strain DSM 44320
prokMSA_id:74780 Nonomuraea latina 
prokMSA_id:89211 Streptosporangium sp. 40012 
prokMSA_id:94263 Nonomuraea sp. ATCC 39727 strain ATCC 39727
prokMSA_id:97245 Actinomadura meyerii A288 AY273787
2.30.1.8.2.5 AMD.MADURAE_SUBGROUP 2 seqs
2.30.1.8.2.5.998 OTU 1 seq
prokMSA_id:40889 Actinomadura namibiensis strain DSM 44197T
2.30.1.8.2.5.999 OTU 1 seq
prokMSA_id:12039 Actinomadura catellatospora str. AS4.1522T
2.30.1.8.3 STREPTOSPORANGIUM_SUBGROUP 18 seqs
2.30.1.8.3.8 PBS.LONGISPORA_SUBGROUP 4 seqs
2.30.1.8.3.8.1001 OTU 4 seqs
prokMSA_id:12043 Actinomadura atramentaria IFO 14695
prokMSA_id:12107 Streptosporangium "cinnabarium" DSM 44094
prokMSA_id:32859 Actinomadura atramentaria strain DSM 43919T
prokMSA_id:45962 Nonomuraea roseoviolacea AB043101
2.30.1.8.3.10 TMMS.CHROMOGENA_SUBGROUP 14 seqs
2.30.1.8.3.10.1002 OTU 14 seqs
prokMSA_id:11996 Thermomonospora curvata DSM 43183
prokMSA_id:11998 Thermomonospora curvata JCM 3096
prokMSA_id:12031 Excellospora viridilutea IFO 14480. D86943
prokMSA_id:12126 Thermomonospora chromogena str. Agre 577 JCM 6244
prokMSA_id:12127 Thermomonospora chromogena ATCC 43196
prokMSA_id:12128 Thermomonospora chromogena ATCC 43196
prokMSA_id:12130 Thermomonospora chromogena ATCC 43196
prokMSA_id:12131 Thermomonospora chromogena ATCC 43196
prokMSA_id:12132 Thermomonospora chromogena ATCC 43196
prokMSA_id:12149 Microbispora rosea subsp. rosea ATCC 27099
prokMSA_id:25544 Streptosporangiaceae str. KACC 20141 
prokMSA_id:27241 Actinomadura rubrobrunea 
prokMSA_id:54694 Thermomonospora chromogena strain ATCC43196 rrnF operon 23S 
prokMSA_id:87249 Bifidobacteriaceae genomosp. C1 
2.30.1.9 ARTHROBACTER_SUBDIVISION 316 seqs
2.30.1.9.1 ARTHROBACTER_AND_RELATIVES 282 seqs
2.30.1.9.1.1 LEUCOBACTER_ASSEMBLAGE 39 seqs
2.30.1.9.1.1.1003 OTU 18 seqs
prokMSA_id:12512 Brevibacterium otitidis str. Marseille 1998-67770 CIP 105044
prokMSA_id:12513 Oerskovia CIP101491 str. 491 CIP 101
prokMSA_id:19020 actinobacterium clone SBRA95 
prokMSA_id:19760 actinobacterium clone SBRA375 
prokMSA_id:20014 actinobacterium clone SBRA213 
prokMSA_id:25122 actinobacterium clone SBRA20 
prokMSA_id:34425 clone CR98-24-54 
prokMSA_id:36879 clone CRP99-03 
prokMSA_id:45333 Nostocoida limicola II strain Ver1
prokMSA_id:49131 Nostocoida limicola II strain Ver2
prokMSA_id:50307 soil clone 672-2 
prokMSA_id:73538 Brevibacterium lutescens strain CF87T AJ488509
prokMSA_id:83363 actinobacterium clone BPS013 
prokMSA_id:95543 actinobacterium clone SW5
prokMSA_id:96502 actinobacterium clone NZ1 AJ575544
prokMSA_id:96696 actinobacterium clone R4
prokMSA_id:96894 actinobacterium clone NO7
prokMSA_id:97102 actinobacterium clone SW8
2.30.1.9.1.1.1005 OTU 1 seq
prokMSA_id:42021 Clavibacter sp. 1033 
2.30.1.9.1.1.1004 OTU 18 seqs
prokMSA_id:12164 unnamed organism
prokMSA_id:12254 Microbacterium thalassium IFO 16060 . AB004713
prokMSA_id:12744 Microlunatus sp. str. Y-73. D50065
prokMSA_id:13270 Tsukamurella paurometabola DSM 20162
prokMSA_id:13282 Tsukamurella paurometabola DSM 20162
prokMSA_id:18883 Curtobacterium sp. VKM Ac-2061 
prokMSA_id:45072 Tsukamurella paurometabola complete 
prokMSA_id:61998 Microbacterium sp. V4.BP.11 marine isolate
prokMSA_id:62867 Nocardia sp. AB111111 
prokMSA_id:71877 Microlunatus sp. D50065
prokMSA_id:81759 Microbacterium paraoxydans strain CF36
prokMSA_id:82698 Nocardia sp. IFM 0330 
prokMSA_id:82942 Nocardia sp. IFM 0636 
prokMSA_id:83505 Nocardia sp. IFM 0260 
prokMSA_id:84348 Tsukamurella spumae strain N1173 complete 
prokMSA_id:84353 Nocardia sp. IFM 0833 
prokMSA_id:88685 Nocardia xishanensis 
prokMSA_id:95805 Gordonia sp. IFM 10148 
2.30.1.9.1.1.1007 OTU 1 seq
prokMSA_id:12159 Clavibacter xyli subsp. cynodontis str. Cxc
2.30.1.9.1.1.1006 OTU 1 seq
prokMSA_id:42597 Leucobacter komagatae 
2.30.1.9.1.2 AGROMYCES_SUBGROUP 4 seqs
2.30.1.9.1.2.1008 OTU 1 seq
prokMSA_id:12175 Agromyces IFO16237 IFO 16236
2.30.1.9.1.2.1011 OTU 1 seq
prokMSA_id:87117 Agromyces cerinus subsp. nitratus strain IMET 11532 
2.30.1.9.1.2.1009 OTU 1 seq
prokMSA_id:12176 Agromyces IFO16237 IFO 16237
2.30.1.9.1.2.1010 OTU 1 seq
prokMSA_id:87098 Agromyces fucosus 
2.30.1.9.1.3 MICROBACTERIUM_SUBGROUP 21 seqs
2.30.1.9.1.3.4 MBM.KERATANOLYTICUM_SUBGROUP 5 seqs
2.30.1.9.1.3.4.1013 OTU 2 seqs
prokMSA_id:26967 Microbacterium sp. VKM Ac-2048 
prokMSA_id:44945 Microbacterium sp. VKM Ac-1808 
2.30.1.9.1.3.4.1012 OTU 1 seq
prokMSA_id:12195 str. UW 103/A31
2.30.1.9.1.3.4.1015 OTU 1 seq
prokMSA_id:37441 Curtobacterium sp. VKM Ac-2058 
2.30.1.9.1.3.4.1014 OTU 1 seq
prokMSA_id:38519 Microbacterium sp. VKM Ac-2050 
2.30.1.9.1.3.5 MBM.IMPERIALE_SUBGROUP 9 seqs
2.30.1.9.1.3.5.1018 OTU 1 seq
prokMSA_id:83680 Microbacterium kitamiense strain OB-2 
2.30.1.9.1.3.5.1017 OTU 4 seqs
prokMSA_id:12221 Microbacterium aurum IFO 15204
prokMSA_id:87526 Microbacterium imperiale 
prokMSA_id:97982 Glacial ice MS-T6-04 
prokMSA_id:98533 Permafrost DT-IIF6 
2.30.1.9.1.3.5.1016 OTU 1 seq
prokMSA_id:35197 Microbacterium sp. VKM Ac-1782 
2.30.1.9.1.3.5.1019 OTU 1 seq
prokMSA_id:41920 Microbacterium sp. OS-6 strain OS-6
2.30.1.9.1.3.5.1020 OTU 1 seq
prokMSA_id:12225 Microbacterium sp. IFO 15709
2.30.1.9.1.3.5.1021 OTU 1 seq
prokMSA_id:12231 str. HTA064
2.30.1.9.1.3.6 MBM.THALASSIUM_SUBGROUP 7 seqs
2.30.1.9.1.3.6.1022 OTU 7 seqs
prokMSA_id:12255 Microbacterium halophilum str. N 76 IFO 16062 . AB004714
prokMSA_id:12256 Microbacterium IFO16248 IFO 16248
prokMSA_id:12914 str. LAA1. AJ006999
prokMSA_id:51374 Pseudonocardia compacta strain IMSNU 20111T
prokMSA_id:73757 Naphthalene-utilizing IS1 AF531474
prokMSA_id:74545 Pseudonocardia sp. strain IMSNU 22071
prokMSA_id:88738 Pseudonocardia antarctica strain DVS 5a1T
2.30.1.9.1.4 CLAVIBACTER_SUBGROUP 93 seqs
2.30.1.9.1.4.1 CLV.MICHIGANENSE_SUBGROUP 33 seqs
2.30.1.9.1.4.1.1025 OTU 16 seqs
prokMSA_id:12268 Clavibacter michiganense subsp. michiganense LMG 7333 . U097
prokMSA_id:16443 FukuN101 
prokMSA_id:45123 Curtobacterium sp. VKM Ac-2060 
prokMSA_id:56496 Actinobacterium MWH-Mo2 
prokMSA_id:59525 Actinobacterium MWH-Mo3 
prokMSA_id:59852 Actinobacterium MWH-Po1 
prokMSA_id:59853 Actinobacterium MWH-Mo1 
prokMSA_id:59854 Actinobacterium MWH-Ta1 
prokMSA_id:59855 Actinobacterium MWH-Bo1 
prokMSA_id:59856 Actinobacterium MWH-Wo1 
prokMSA_id:59857 Actinobacterium MWH-Ta2 
prokMSA_id:88133 Microbacteriaceae MWH-VicE1 isolate MWH-VicE1
prokMSA_id:89130 Actinobacterium MWH-Tana7 isolate MWH-Tana7
prokMSA_id:89495 Microbacteriaceae MWH-Man1 isolate MWH-Man1
prokMSA_id:89732 Actinobacterium MWH-TaSIIW17 isolate MWH-TaSIIW17
prokMSA_id:90191 Actinobacterium MWH-Uga2 isolate MWH-Uga2
2.30.1.9.1.4.1.1024 OTU 7 seqs
prokMSA_id:17892 clone CR98-5-30 
prokMSA_id:32318 clone CR99-35-08 
prokMSA_id:33125 clone CR99-2-18 
prokMSA_id:37284 clone C12-2 
prokMSA_id:40638 clone CR98-5-28 
prokMSA_id:48109 clone CR98-24-44 
prokMSA_id:59399 clone CRD99-08 
2.30.1.9.1.4.1.1023 OTU 1 seq
prokMSA_id:39549 Clavibacter michiganensis strain P 202/10
2.30.1.9.1.4.1.1027 OTU 1 seq
prokMSA_id:31778 Frigoribacterium sp. 312 
2.30.1.9.1.4.1.1026 OTU 7 seqs
prokMSA_id:12277 Cryobacterium psychrophilum str. 27-O-b JCM 1463 . D45058
prokMSA_id:79704 Arctic sea ice ARK10190 
prokMSA_id:79881 Cryobacterium psychrophilum strain DSM 4854
prokMSA_id:79897 Arctic sea ice ARK10186 
prokMSA_id:85975 Agromyces albus 
prokMSA_id:95889 Agromyces ulmi strain XIL01 complete 
prokMSA_id:95950 Agromyces ulmi strain XIL05 complete 
2.30.1.9.1.4.1.1028 OTU 1 seq
prokMSA_id:94524 Hindgut symbiont C3 of Tipula abdominalis 
2.30.1.9.1.4.2 RTB.RATHAYI_SUBGROUP 20 seqs
2.30.1.9.1.4.2.1030 OTU 2 seqs
prokMSA_id:81046 clone SC121 
prokMSA_id:96596 actinobacterium clone SV1-7
2.30.1.9.1.4.2.1031 OTU 3 seqs
prokMSA_id:16324 clone BA4 
prokMSA_id:95198 actinobacterium clone SV1-10
prokMSA_id:98221 actinobacterium clone SV1-16
2.30.1.9.1.4.2.1032 OTU 1 seq
prokMSA_id:80677 Arctic sea ice ARK10173 
2.30.1.9.1.4.2.1029 OTU 1 seq
prokMSA_id:12278 Rathayibacter tritici DSM 7486
2.30.1.9.1.4.2.1034 OTU 1 seq
prokMSA_id:50557 Subtercola frigoramans 
2.30.1.9.1.4.2.1033 OTU 12 seqs
prokMSA_id:76283 actinobacterium ML110J-21 
prokMSA_id:76738 actinobacterium ML110J-32 
prokMSA_id:79487 actinobacterium ML320J-19 
prokMSA_id:79782 actinobacterium ML110M-12 
prokMSA_id:91955 clone K2-30-8 
prokMSA_id:95858 actinobacterium clone SV2-23
prokMSA_id:96376 actinobacterium clone SV2-17
prokMSA_id:96768 actinobacterium clone SV2-22
prokMSA_id:97094 actinobacterium clone SV1-3
prokMSA_id:97223 actinobacterium clone SV2-21 AJ575525
prokMSA_id:97424 actinobacterium clone SV1-8
prokMSA_id:98272 actinobacterium clone SV2-20
2.30.1.9.1.4.3 CUB.CITREUM_SUBGROUP 40 seqs
2.30.1.9.1.4.3.1035 OTU 9 seqs
prokMSA_id:12297 Tropheryma whippelii 23S 5S genes and IGS isolated from pati
prokMSA_id:25685 Tropheryma whippelii from patient 3 operon complete 
prokMSA_id:39437 Tropheryma whippelii 
prokMSA_id:40919 Tropheryma whippelii from patient 2 operon complete 
prokMSA_id:46722 Tropheryma whippelii 
prokMSA_id:79992 Tropheryma whipplei str. Twist complete genome
prokMSA_id:80508 Tropheryma whipplei str. Twist section 1 of 3 of the complet
prokMSA_id:80600 Tropheryma whipplei TW08/27 complete genome; segment 3/3
prokMSA_id:84780 Tropheryma whippelii IGS and 23S 
2.30.1.9.1.4.3.1037 OTU 15 seqs
prokMSA_id:12290 Brevibacterium "helvolum" DSM 20419
prokMSA_id:12292 IFO 15616. AB012590
prokMSA_id:12295 IFO 15702
prokMSA_id:59851 Actinobacterium MWH-Ta3 
prokMSA_id:62712 actinobacterium clone ML602J-51 
prokMSA_id:79422 actinobacterium ML812M-15 
prokMSA_id:79854 actinobacterium clone ML110J-22 
prokMSA_id:80013 actinobacterium clone ML110J-11 
prokMSA_id:80049 actinobacterium clone ML310M-33 
prokMSA_id:80234 actinobacterium clone ML110M-5 
prokMSA_id:80358 actinobacterium clone ML320J-32 
prokMSA_id:80381 actinobacterium clone ML516J-7 
prokMSA_id:80474 actinobacterium clone ML1218M-10 
prokMSA_id:81025 actinobacterium clone ML602M-15 
prokMSA_id:91847 clone W1A-C08 AY345524
2.30.1.9.1.4.3.1036 OTU 16 seqs
prokMSA_id:12157 Corynebacterium "aquaticum" DSM 20146. X77450
prokMSA_id:12298 Curtobacterium luteum DSM 20542 . X77437
prokMSA_id:12299 Curtobacterium citreum DSM 20528
prokMSA_id:17229 Curtobacterium albidum 
prokMSA_id:27533 Curtobacterium sp. VKM Ac-2056 
prokMSA_id:30962 Curtobacterium sp. VKM Ac-1811 
prokMSA_id:35312 Curtobacterium sp. VKM Ac-1376 
prokMSA_id:41734 Curtobacterium flaccumfaciens strain P 259/26
prokMSA_id:46404 Leifsonia poae 
prokMSA_id:51971 Curtobacterium flaccumfaciens pv. flaccumfaciens strain LMG3
prokMSA_id:59541 CAGY8 strain CAGY8 
prokMSA_id:71860 Curtobacterium sp. IFO 12674T AB046364
prokMSA_id:74824 Curtobacterium sp. VKM Ac-1809 
prokMSA_id:82683 Cryocola antiquus strain VKM 103PF 
prokMSA_id:82704 Cryocola antiquus strain VKM Ac-2070 
prokMSA_id:88550 Curtobacterium sp. M84 
2.30.1.9.1.5 CELLULOMONAS_SUBGROUP 47 seqs
2.30.1.9.1.5.1 CLLM.FLAVIGENA_SUBGROUP 35 seqs
2.30.1.9.1.5.1.1040 OTU 1 seq
prokMSA_id:44206 Salana multivorans strain Se-3111
2.30.1.9.1.5.1.1042 OTU 2 seqs
prokMSA_id:29639 Cellulomonas sp. complete strain IFO16066
prokMSA_id:72333 Cellulomonas sp. complete strain IFO16064T AB004732
2.30.1.9.1.5.1.1041 OTU 1 seq
prokMSA_id:61987 Cellulomonas sp. d6 strain d6
2.30.1.9.1.5.1.1039 OTU 1 seq
prokMSA_id:58582 Actinomyces nasicol strain CCUG 46092
2.30.1.9.1.5.1.1043 OTU 3 seqs
prokMSA_id:12315 Cellulomonas flavigena NCIMB 8073
prokMSA_id:12317 Cellulomonas sp. str. 794
prokMSA_id:12323 Cellulomonas flavigena
2.30.1.9.1.5.1.1044 OTU 7 seqs
prokMSA_id:11985 Thermobispora bispora str. R51 ATCC 19993 =rrnB
prokMSA_id:11986 Thermobispora bispora str. R51 ATCC 19993 =rrnD
prokMSA_id:11987 Microbispora bispora JCM 3082
prokMSA_id:12341 clone BURTON-14
prokMSA_id:37993 Ferromicrobium acidophilum 
prokMSA_id:58323 clone ASL4 AF543498
prokMSA_id:63831 actinobacterium clone ML316M-15 
2.30.1.9.1.5.1.1045 OTU 3 seqs
prokMSA_id:81412 clone KD1-21 
prokMSA_id:81680 clone KD1-70 
prokMSA_id:81808 clone KD3-138 
2.30.1.9.1.5.1.1046 OTU 6 seqs
prokMSA_id:12327 Cellulomonas sp. str. 1781
prokMSA_id:12338 Cellulomonas gelida
prokMSA_id:12364 Terracoccus luteus DSM 44267
prokMSA_id:37173 Q3-24C2 AY048891
prokMSA_id:47463 Cellulomonas gelida complete 
prokMSA_id:74689 Arthrobacter sp. 1736 AB054893
2.30.1.9.1.5.1.1047 OTU 8 seqs
prokMSA_id:67658 Arcanobacterium hippocoleae strain CCUG 44697
prokMSA_id:94292 Mobiluncus mulieris strain CCUG 22335 AJ576080
prokMSA_id:94295 Mobiluncus mulieris strain CCUG 22331
prokMSA_id:94305 Mobiluncus mulieris strain CCUG 22336
prokMSA_id:94392 Mobiluncus mulieris strain CCUG 22332
prokMSA_id:94880 Mobiluncus mulieris strain CCUG 22333 AJ576078
prokMSA_id:95061 Mobiluncus curtisii strain CCUG 22339
prokMSA_id:95111 Mobiluncus curtisii strain CCUG 44166B
2.30.1.9.1.5.1.1049 OTU 2 seqs
prokMSA_id:30488 Cellulomonas sp. 1248 
prokMSA_id:58688 Lochheadia duodecas 
2.30.1.9.1.5.1.1048 OTU 1 seq
prokMSA_id:74501 Terrabacter sp. 1254 
2.30.1.9.1.5.4 TRB.TUMESCENS_SUBGROUP 12 seqs
2.30.1.9.1.5.4.1050 OTU 3 seqs
prokMSA_id:12371 str. Lp2
prokMSA_id:75998 Janibacter sp. YY-1 
prokMSA_id:94681 Citricoccus halotolerans strain YIM 70010 
2.30.1.9.1.5.4.1052 OTU 1 seq
prokMSA_id:41096 strain LMG 20242
2.30.1.9.1.5.4.1051 OTU 2 seqs
prokMSA_id:18874 Tetrasphaera australiensis strain 110 
prokMSA_id:21157 Tetrasphaera australiensis strain 109 
2.30.1.9.1.5.4.1053 OTU 1 seq
prokMSA_id:56542 clone 14 
2.30.1.9.1.5.4.1055 OTU 1 seq
prokMSA_id:34447 clone BIai11
2.30.1.9.1.5.4.1057 OTU 1 seq
prokMSA_id:29636 Ornithinicoccus hortensis 
2.30.1.9.1.5.4.1056 OTU 2 seqs
prokMSA_id:19278 Terrabacter sp. 1185a AB054827
prokMSA_id:74770 Terrabacter sp. 1037 
2.30.1.9.1.5.4.1054 OTU 1 seq
prokMSA_id:78162 Ornithinicoccus sp. TUT1020 
2.30.1.9.1.6 ARTHROBACTER_SUBGROUP 74 seqs
2.30.1.9.1.6.1 ARB.GLOBIFORMIS_SUBGROUP 8 seqs
2.30.1.9.1.6.1.1059 OTU 1 seq
prokMSA_id:94065 Actinobacterium clone Gitt-GS-68
2.30.1.9.1.6.1.1060 OTU 2 seqs
prokMSA_id:12398 Arthrobacter SN16A str. SN16A
prokMSA_id:12696 Kineosporia rhizophila str. I-449 JCM 9960 . AB003933
2.30.1.9.1.6.1.1058 OTU 4 seqs
prokMSA_id:46937 Arthrobacter sp. YH-2001 
prokMSA_id:66276 Arthrobacter sp. LCSAOTU6 
prokMSA_id:74109 Arthrobacter sp. 19503 AJ315071
prokMSA_id:98219 Permafrost DT-IIT23 AY378262
2.30.1.9.1.6.1.1061 OTU 1 seq
prokMSA_id:98681 Extreme arid zone HX-IE11 
2.30.1.9.1.6.2 ARB.AGILIS_SUBGROUP 41 seqs
2.30.1.9.1.6.2.1062 OTU 38 seqs
prokMSA_id:12393 Arthrobacter chlorophenolicus str. A-6
prokMSA_id:12400 Arthrobacter sp. str. 445
prokMSA_id:12446 Arthrobacter sp. str. 19B
prokMSA_id:12448 Arthrobacter sp. str. RC100
prokMSA_id:12449 Arthrobacter histidinolovorans DSM 20115 . X83406
prokMSA_id:12451 Arthrobacter ilicis DSM 20138
prokMSA_id:12452 Arthrobacter aurescens DSM 20116
prokMSA_id:12453 Arthrobacter sp. str. 19C
prokMSA_id:12496 Actinomyces sp. str. CCUG 25688
prokMSA_id:12506 Kocuria rhizophila str. TA68 strain DSM 11926
prokMSA_id:12540 Dermatophilus congolensis ATCC 14637
prokMSA_id:12541 Dermatophilus congolensis ATCC 14637 . M59057
prokMSA_id:16551 Kocuria rhizophila strain JPL-9 
prokMSA_id:18159 Dermatophilus congolensis DSM 44180 strain
prokMSA_id:18301 Arthrobacter ilicis 
prokMSA_id:33100 Arthrobacter sp. 825 bp
prokMSA_id:33563 Rothia sp. CCUG 25688 
prokMSA_id:41769 Arthrobacter keyseri 12B 
prokMSA_id:43176 Micrococcus sp. 1182 
prokMSA_id:50169 Kocuria sp. oral clone AW006 
prokMSA_id:50851 Arthrobacter sp. B10 
prokMSA_id:58293 Rothia dentocariosa strain ChDC OS32 
prokMSA_id:58299 Rothia sp. ChDC B202 
prokMSA_id:58301 Rothia sp. ChDC B201 
prokMSA_id:58302 Rothia dentocariosa strain ChDC B199 
prokMSA_id:58305 Rothia dentocariosa strain ChDC B198 
prokMSA_id:60994 Naphthalene-utilizing IS5 
prokMSA_id:74259 Micrococcus luteus strain 118 AJ312751
prokMSA_id:75066 clone:KSRS17
prokMSA_id:75566 Arthrobacter nitroguaiacolicus strain DSM 4924
prokMSA_id:75585 Arthrobacter sp. SB28 strain SB28
prokMSA_id:76404 Arthrobacter sp. SB30 strain SB30
prokMSA_id:80426 Micrococcus luteus genes -23S ISR 23S and complete 
prokMSA_id:81250 Kocuria sp. KMM 3905 
prokMSA_id:83602 Antarctic R-9183 strain R-9183
prokMSA_id:85271 Actinobacterium W-2023b parital AB107187
prokMSA_id:92005 W8 
prokMSA_id:97729 Glacial ice ML-B10 
2.30.1.9.1.6.2.1065 OTU 1 seq
prokMSA_id:12440 Arthrobacter citreus str. C7 DSM 20133
2.30.1.9.1.6.2.1064 OTU 1 seq
prokMSA_id:63458 Arthrobacter koreensis strain CA15-8 
2.30.1.9.1.6.2.1063 OTU 1 seq
prokMSA_id:84289 Actinobacterium W-2005 parital 
2.30.1.9.1.6.3 ARB.SULFUREUS_SUBGROUP 11 seqs
2.30.1.9.1.6.3.1066 OTU 2 seqs
prokMSA_id:49962 Micrococcus psychrophilum mRNA 
prokMSA_id:74674 Nocardia sp. 7031 
2.30.1.9.1.6.3.1067 OTU 8 seqs
prokMSA_id:12484 clone pX1. U27860
prokMSA_id:45136 Arthrobacter nicotianae strain SB42
prokMSA_id:65389 Arthrobacter nicotianae 
prokMSA_id:77664 Arthrobacter sp. TUT1004 
prokMSA_id:78055 Arthrobacter sp. TUT1003 
prokMSA_id:93370 Arthrobacter sp. An25 isolate An25
prokMSA_id:93546 Arthrobacter sp. An4 isolate An4
prokMSA_id:93655 Arthrobacter sp. An29 isolate An29
2.30.1.9.1.6.3.1068 OTU 1 seq
prokMSA_id:12480 Micrococcus lylae str. JL 178 DSM 20315
2.30.1.9.1.6.6 STT.MUCILAGINOSUS_SUBGROUP 2 seqs
2.30.1.9.1.6.6.1069 OTU 2 seqs
prokMSA_id:12495 Rothia dentocariosa ATCC 17931 . M59055
prokMSA_id:58300 Rothia dentocariosa strain ChDC B200 
2.30.1.9.1.6.7 KOCURIA_SUBGROUP 8 seqs
2.30.1.9.1.6.7.1071 OTU 1 seq
prokMSA_id:78705 Kocuria palustris isolate 6:18 560BP
2.30.1.9.1.6.7.1070 OTU 6 seqs
prokMSA_id:12283 Detolaasinbacter muratae str. CM-10. AB012648
prokMSA_id:12284 Detolaasinbacter OM-A1 str. OM-A1
prokMSA_id:12814 Actinoplanes philippinensis. X72864
prokMSA_id:32619 Mycobacterium sp. ESD 
prokMSA_id:35206 Kocuria polaris strain CMS76or
prokMSA_id:61958 Nocardioides sp. V4.BO.15 
2.30.1.9.1.6.7.1072 OTU 1 seq
prokMSA_id:97829 Permafrost DT-IV20 
2.30.1.9.1.6.8 BRB.LINENS_SUBGROUP 4 seqs
2.30.1.9.1.6.8.1073 OTU 1 seq
prokMSA_id:89206 Brevibacterium aureum strain Enb15 
2.30.1.9.1.6.8.1074 OTU 3 seqs
prokMSA_id:12516 Brevibacterium linens NCDO 739 . X76566
prokMSA_id:70157 Brevibacterium linens strain SB1 AJ315491
prokMSA_id:89039 Brevibacterium antarcticum strain DVS 5a2
2.30.1.9.1.7 DERMATOPHILUS_SUBGROUP 4 seqs
2.30.1.9.1.7.2 DRB.HOMINIS_SUBGROUP 3 seqs
2.30.1.9.1.7.2.1075 OTU 3 seqs
prokMSA_id:12533 Dermabacter hominis DSM 7083 . X91034
prokMSA_id:12534 Dermabacter hominis NCFB 2769 . X76728
prokMSA_id:25478 Dermabacter hominis 
2.30.1.9.1.7.3 DER.CONGOLENSIS_SUBGROUP 1 seq
2.30.1.9.1.7.3.1076 OTU 1 seq
prokMSA_id:52125 Kytococcus sp. Muenster 2000 
2.30.1.9.2 ACTINOMYCES_AND_RELATIVES 32 seqs
2.30.1.9.2.1 ACTINOMYCES_SUBGROUP 11 seqs
2.30.1.9.2.1.2 ACT.NEUII_SUBGROUP 11 seqs
2.30.1.9.2.1.2.1078 OTU 4 seqs
prokMSA_id:23235 Actinomyces sp. VA20732_01 
prokMSA_id:47631 Actinomyces hyovaginalis strain UZCOR144
prokMSA_id:60136 Actinomyces sp. CCUG 44997 
prokMSA_id:82476 Actinomyces vaccimaxillae strain R10176T
2.30.1.9.2.1.2.1077 OTU 7 seqs
prokMSA_id:13427 Corynebacterium Corynebacterium sp. MTcory11W
prokMSA_id:29527 Actinomyces sp. oral strain Hal-1065 
prokMSA_id:41300 Actinomyces sp. oral strain C29KA AF287751
prokMSA_id:73471 Corynebacterium sp. clone DS081 AF366275
prokMSA_id:74130 Actinomyces sp. oral strain Hal-1083 AF385522
prokMSA_id:87494 Actinomyces genomosp. C2 
prokMSA_id:92123 Actinomyces sp. oral clone GU009 
2.30.1.9.2.2 BIFIDOBACTERIUM_SUBGROUP 21 seqs
2.30.1.9.2.2.1 BIF.MINIMUM_SUBGROUP 3 seqs
2.30.1.9.2.2.1.1079 OTU 3 seqs
prokMSA_id:12603 Bifidobacterium coryneforme ATCC 25911 . M58733
prokMSA_id:12604 Bifidobacterium indicum JCM 1302
prokMSA_id:12620 Bifidobacterium denticolens str. strain DSM 10105
2.30.1.9.2.2.2 BIF.CATENULATUM_SUBGROUP 3 seqs
2.30.1.9.2.2.2.1080 OTU 3 seqs
prokMSA_id:12610 Bifidobacterium pseudocatenulatum str. strain JCM 1200
prokMSA_id:58019 clone:C-18
prokMSA_id:71024 human infant L127dC AF253376
2.30.1.9.2.2.3 BIF.BIFIDUM_SUBGROUP 10 seqs
2.30.1.9.2.2.3.1081 OTU 10 seqs
prokMSA_id:12625 Bifidobacterium boum JCM 1211. D86190
prokMSA_id:12639 Bifidobacterium magnum ATCC 27540 . M58740
prokMSA_id:12640 Bifidobacterium magnum JCM 8219. D86193
prokMSA_id:12646 Bifidobacterium gallinarum JCM 6291. D86191
prokMSA_id:12648 Bifidobacterium saeculare str. strain DSM 6531
prokMSA_id:12649 Bifidobacterium subtile JCM 7109
prokMSA_id:12650 Bifidobacterium saeculare DSM 6533
prokMSA_id:25225 rumen 3C3d-20 
prokMSA_id:42077 rumen 4C3d-16 AB034095
prokMSA_id:55846 Bifidobacterium thermacidophilum subsp. suis complete 
2.30.1.9.2.2.4 BIF.LACTIS_SUBGROUP 2 seqs
2.30.1.9.2.2.4.1082 OTU 2 seqs
prokMSA_id:12637 Bifidobacterium pseudolongum subsp. pseudolongum JCM 1205. D
prokMSA_id:69649 Bifidobacterium pseudolongum subsp. globosum strain 7#-3-7 
2.30.1.9.2.2.5 BIF.INFANTIS_SUBGROUP 3 seqs
2.30.1.9.2.2.5.1083 OTU 1 seq
prokMSA_id:46223 Bifidobacterium breve 
2.30.1.9.2.2.5.1084 OTU 2 seqs
prokMSA_id:28109 Bifidobacterium breve strain Y8 AJ311605
prokMSA_id:37229 Bifidobacterium longum strain Y10
2.30.1.9.3 KINEOSPORIA_GROUP 2 seqs
2.30.1.9.3.1085 OTU 1 seq
prokMSA_id:12690 str. G10 dolomite marbel Namibia
2.30.1.9.3.1086 OTU 1 seq
prokMSA_id:12681 str. AS3381
2.30.1.10 PROPIONIBACTERIUM_GROUP 103 seqs
2.30.1.10.1 PRP.ACNES_SUBGROUP 3 seqs
2.30.1.10.1.1087 OTU 2 seqs
prokMSA_id:20375 sheep mite Llangefni 35 
prokMSA_id:94494 Actinobacterium clone S15B-MN4
2.30.1.10.1.1088 OTU 1 seq
prokMSA_id:67360 Propionibacterium sp. MSP09A 
2.30.1.10.2 PRP.THOENII_SUBGROUP 5 seqs
2.30.1.10.2.1090 OTU 2 seqs
prokMSA_id:12724 Propionibacterium granulosum DSM 20700
prokMSA_id:12725 Propionibacterium granulosum ATCC 25564. U02906
2.30.1.10.2.1089 OTU 3 seqs
prokMSA_id:12722 combesii ATCC 25545 . L34614
prokMSA_id:49248 Propionibacterium microaerophilus 
prokMSA_id:93749 Propionibacterium acidipropionici strain DH42 AY360222
2.30.1.10.3 PRP.FREUDENREICHII_SUBGROUP 4 seqs
2.30.1.10.3.1091 OTU 4 seqs
prokMSA_id:12728 Propionibacterium cyclohexanicum
prokMSA_id:17374 Propionibacterium propionicus 
prokMSA_id:18155 Propionibacterium propionicus strain DSM 43307T
prokMSA_id:23815 Propionibacterium sp. LCDC-98A072 
2.30.1.10.6 PRP.LYMPHOPHILUM_SUBGROUP 2 seqs
2.30.1.10.6.1092 OTU 2 seqs
prokMSA_id:12734 Propionibacterium lymphophilum DSM 4903
prokMSA_id:12735 Propionibacterium lymphophilum ATCC 27520
2.30.1.10.7 LUT.JAPONICUS_SUBGROUP 1 seq
2.30.1.10.7.1093 OTU 1 seq
prokMSA_id:12738 Luteococcus japonicus IFO 12422
2.30.1.10.9 MCL.PHOSPHOVORUS_SUBGROUP 4 seqs
2.30.1.10.9.1095 OTU 1 seq
prokMSA_id:12743 Friedmanniella capsulatus str. Ben 108; J47 ACM 5120
2.30.1.10.9.1094 OTU 2 seqs
prokMSA_id:12741 Friedmanniella antarctica str. AA-1042 DSM 11053
prokMSA_id:12742 Friedmanniella spumicola str. Ben 107 ACM 5121
2.30.1.10.9.1096 OTU 1 seq
prokMSA_id:47043 Friedmanniella sp. EL-17a 
2.30.1.10.11 NCR.ALBUS_SUBGROUP 21 seqs
2.30.1.10.11.1097 OTU 3 seqs
prokMSA_id:12840 Verrucosispora gifhornensis str. HR1-2 DSM 44337
prokMSA_id:21031 Nocardioides sp. JS884 
prokMSA_id:82319 Nocardioides sp. NS/27 strain NS/27 AJ549286
2.30.1.10.11.1098 OTU 18 seqs
prokMSA_id:12769 Nocardioides simplex DSM 20130
prokMSA_id:12780 Nocardioides simplex KCTC 9106
prokMSA_id:12782 Nocardioides nitrophenolicus str. NSP41
prokMSA_id:29872 Nocardioides simplex 
prokMSA_id:32654 Nocardioides simplex 
prokMSA_id:33375 Nocardioides simplex 
prokMSA_id:47949 Nocardioides simplex 
prokMSA_id:55498 Salinospora sp. CNH440 
prokMSA_id:59317 Salinospora sp. CNH643 
prokMSA_id:59318 Salinospora sp. CNH964 
prokMSA_id:59320 Salinospora sp. CNH898 
prokMSA_id:60763 Nocardioides sp. JS614 
prokMSA_id:63871 Nocardioides sp. H-2 
prokMSA_id:63872 Nocardioides sp. A-3 
prokMSA_id:63873 Nocardioides sp. NSA1-2 
prokMSA_id:63875 Nocardioides sp. H-1 
prokMSA_id:70751 Nocardioides sp. NSA1-1 AB087722
prokMSA_id:91881 clone W4-B24 AY345502
2.30.1.10.12 KRIBBELLA_SUBGROUP 63 seqs
2.30.1.10.12.1099 OTU 1 seq
prokMSA_id:45777 Actinosingapura polymorpha 
2.30.1.10.12.1100 OTU 62 seqs
prokMSA_id:12768 Nocardioides sp. str. OS4
prokMSA_id:12803 Hongia koreensis str. LM 161T =IMSNU 50530T. Y09159
prokMSA_id:12804 Kribbella sandramycini ATCC 39419
prokMSA_id:12815 Actinoplanes philippinensis ATCC 12427
prokMSA_id:12816 Actinoplanes auranticolor IFO 12245
prokMSA_id:12817 Actinoplanes capillaceus str. K95-5561
prokMSA_id:12818 Actinoplanes cyaneus DSM 46137 . X93186
prokMSA_id:12820 Actinoplanes regularis DSM 43151 . X93188
prokMSA_id:12821 Actinoplanes utahensis str. Bayer AG SE50/110 ATCC 31044
prokMSA_id:12893 Dactylosporangium roseum IFO 14352 . D86941
prokMSA_id:12899 Dactylosporangium roseum IFO 14352
prokMSA_id:12903 Dactylosporangium roseum DSM 43916
prokMSA_id:17380 Actinoplanes yunnanensis 
prokMSA_id:17385 Actinoplanes ianthinogenes strain IMSNU 20032
prokMSA_id:17991 Actinoplanes sp. IFO 13943 
prokMSA_id:18388 Actinoplanes sp. IFO 14264 
prokMSA_id:19569 Actinoplanes liguriae strain IMSNU 22127
prokMSA_id:20207 Actinoplanes utahensis strain IMSNU 20044T
prokMSA_id:21002 Actinoplanes cyaneus 
prokMSA_id:22701 Actinoplanes ferrugineus strain IMSNU 22125T
prokMSA_id:23551 Actinoplanes deccanensis 
prokMSA_id:23936 Actinoplanes humidus complete 
prokMSA_id:24564 Actinoplanes kinshanensis strain IMSNU 20034
prokMSA_id:24733 Actinoplanes italicus 
prokMSA_id:26230 Actinoplanes italicus complete 
prokMSA_id:28575 Actinoplanes sp. IFO 14460 
prokMSA_id:29970 Actinoplanes ianthinogenes 
prokMSA_id:30667 Actinoplanes ferrugineus 
prokMSA_id:31721 Actinoplanes derwentensis strain IMSNU 20027T
prokMSA_id:33156 Actinoplanes penicillatus strain IMSNU 22129
prokMSA_id:36425 Actinoplanes campanulatus AB036995
prokMSA_id:36605 Actinoplanes roseosporangius 
prokMSA_id:36612 Actinoplanes sp. IFO 14265 
prokMSA_id:36834 Actinoplanes sp. IFO 14066 
prokMSA_id:38986 Actinoplanes globisporus AB037003
prokMSA_id:39010 Actinoplanes consettensis 
prokMSA_id:40065 Actinoplanes globisporus strain IMSNU 20030T
prokMSA_id:40835 Actinoplanes awajinensis subsp. mycoplanecinus 
prokMSA_id:41171 Actinoplanes ferrugineus AB037002
prokMSA_id:41503 Actinoplanes regularis AB037011
prokMSA_id:42133 Actinoplanes liguriae 
prokMSA_id:43093 Actinoplanes durhamensis strain IMSNU 22124T
prokMSA_id:44122 Actinoplanes deccanensis strain IMSNU 20026T
prokMSA_id:44805 Actinoplanes sp. IFO 13944 
prokMSA_id:45208 Actinoplanes kinshanensis 
prokMSA_id:48199 Actinoplanes palleronii complete 
prokMSA_id:49393 Actinoplanes regularis 
prokMSA_id:49449 Actinoplanes palleronii 
prokMSA_id:50704 Actinoplanes lobatus 
prokMSA_id:51111 Actinoplanes consettensis 
prokMSA_id:51187 Actinoplanes durhamensis 
prokMSA_id:51486 Actinoplanes roseosporangius strain IMSNU 22133
prokMSA_id:51900 Actinoplanes utahensis 
prokMSA_id:52031 Actinoplanes globisporus 
prokMSA_id:52270 Actinoplanes humidus strain IMSNU 22051T
prokMSA_id:52736 Nocardioides sp. C190 
prokMSA_id:52957 Actinoplanes durhamensis 
prokMSA_id:55745 Nocardioides sp. YIM31075 
prokMSA_id:55832 Nocardioides sp. YIM31530 AY082063
prokMSA_id:71488 Dactylosporangium roseum strain IFO14352 D86941
prokMSA_id:75832 Actinoplanes palleronii strain IMSNU 20038T
prokMSA_id:86255 Actinoplanes sp. strain 8
2.30.1.11 MICROMONOSPORA_GROUP 33 seqs
2.30.1.11.5 CATENULOPLANES_SUBGROUP 4 seqs
2.30.1.11.5.3 CCP.CAERULEUS_SUBGROUP 4 seqs
2.30.1.11.5.3.1101 OTU 3 seqs
prokMSA_id:49242 Actinoplanes nipponensis 
prokMSA_id:64357 Actinoplanes sp. YM-3 AY113685
prokMSA_id:85492 Actinoplanes sp. strain 159
2.30.1.11.5.3.1102 OTU 1 seq
prokMSA_id:12836 Couchioplanes caeruleus subsp. caeruleus IFO 13939
2.30.1.11.9 MMS.ECHINOSPORA_SUBGROUP 24 seqs
2.30.1.11.9.1103 OTU 24 seqs
prokMSA_id:12762 Nocardioides sp. str. EL-17 lawson
prokMSA_id:12763 Nocardioides sp
prokMSA_id:12787 Nocardioides sp. str. KP7
prokMSA_id:12828 Catenuloplanes japonicus DSM 44102 . X93201
prokMSA_id:12829 Planopolyspora crispa JCM 9312
prokMSA_id:12830 Catenuloplanes japonicus IFO 14176 . D85476
prokMSA_id:12841 Micromonospora olivasterospora str. MK70 DSM 43868
prokMSA_id:12842 Micromonospora peucetica str. DSM 43363 strain
prokMSA_id:12843 Micromonospora purpureochromogenes DSM 43821
prokMSA_id:12854 Micromonospora fulviviridis str. DSM 43906. X92620
prokMSA_id:12867 Micromonospora inositola DSM 43819 . X92610
prokMSA_id:12872 Micromonospora echinoaurantiaca str. DSM 44390
prokMSA_id:12878 Micromonospora viridifaciens str. DSM 43909
prokMSA_id:28171 Virgosporangium aurantiacum strain:YU438-5 AB006169
prokMSA_id:42214 Micromonospora sp. 0138 
prokMSA_id:77587 Catenuloplanes atrovinosus strain IMSNU 22012T
prokMSA_id:78124 Catenuloplanes indicus strain IMSNU 22099T AJ294717
prokMSA_id:83628 Micromonospora sp. DSM 44396 strain DSM 44396
prokMSA_id:85407 Micromonospora sp. DSM 44397 strain DSM 44397
prokMSA_id:88326 Micromonospora sp. 40010 
prokMSA_id:93484 Micromonospora sp. i19 
prokMSA_id:93491 Micromonospora sp. e78 AY360163
prokMSA_id:93558 Micromonospora sp. e7 
prokMSA_id:93892 Micromonospora sp. JPN 18-047 
2.30.1.11.10 MMS.CARBONACEA_SUBGROUP 1 seq
2.30.1.11.10.1104 OTU 1 seq
prokMSA_id:12885 Micromonospora carbonacea subsp. aurantiaca
2.30.1.11.12 CTL.CITREA_SUBGROUP 1 seq
2.30.1.11.12.1105 OTU 1 seq
prokMSA_id:12889 Catellatospora citrea subsp. citrea DSM 44097
2.30.1.11.13 DCT.AURANTIACUM_SUBGROUP 3 seqs
2.30.1.11.13.1106 OTU 1 seq
prokMSA_id:12892 Dactylosporangium aurantiacum str. D-748 ATCC 23491
2.30.1.11.13.1107 OTU 1 seq
prokMSA_id:12902 Dactylosporangium thailandense DSM 43158
2.30.1.11.13.1108 OTU 1 seq
prokMSA_id:12905 Dactylosporangium aurantiacum str. D-748 DSM 43157
2.30.1.12 SACCHAROPOLYSPORA_GROUP 79 seqs
2.30.1.12.1 PSC.HALOPHOBICA_SUBGROUP 8 seqs
2.30.1.12.1.1109 OTU 2 seqs
prokMSA_id:12931 Pseudonocardia K1 str. K1
prokMSA_id:43413 Pseudonocardia petroleophila strain IMSNU 22072T
2.30.1.12.1.1110 OTU 1 seq
prokMSA_id:42025 Pseudonocardia spinospora isolate LM 141T
2.30.1.12.1.1112 OTU 1 seq
prokMSA_id:35860 Actinobacterium YNPRH1P-1 
2.30.1.12.1.1111 OTU 1 seq
prokMSA_id:31830 Actinobispora yunnanensis strain IMSNU 22019T
2.30.1.12.1.1113 OTU 3 seqs
prokMSA_id:12926 Pseudonocardia asaccharolytica str. 580 DSM 44247
prokMSA_id:12993 Actinokineospora riparia IFO 14541 . X76953
prokMSA_id:12995 Actinokineospora inagensis NRRL B-24050. AF114799
2.30.1.12.3 SCP.HIRSUTA_SUBGROUP 10 seqs
2.30.1.12.3.1115 OTU 1 seq
prokMSA_id:41449 Actinopolyspora indiensis 
2.30.1.12.3.1114 OTU 1 seq
prokMSA_id:12942 Saccharopolyspora flava str. AS4.1520T
2.30.1.12.3.1116 OTU 8 seqs
prokMSA_id:12581 Mobiluncus curtisii subsp. curtisii str. BV 345-16 ATCC 3524
prokMSA_id:32595 Mobiluncus curtisii subsp. holmesii strain CCUG 17762T AJ318
prokMSA_id:36897 Mobiluncus curtisii subsp. curtisii strain CCUG 21018
prokMSA_id:78008 Mobiluncus curtisii subsp. curtisii strain CCUG 21018T
prokMSA_id:78135 Mobiluncus curtisii subsp. holmesii strain CCUG 17762T
prokMSA_id:93318 Mobiluncus curtisii strain CCUG 14552
prokMSA_id:94023 Mobiluncus curtisii strain CCUG 14425
prokMSA_id:94989 Mobiluncus curtisii strain CCUG 24716
2.30.1.12.4 SCT.AUSTRALIENSIS_SUBGROUP 4 seqs
2.30.1.12.4.1117 OTU 3 seqs
prokMSA_id:12988 NRRL B-16238. AF114806
prokMSA_id:13009 Amycolatopsis fastidiosa ATCC 31181 . X53200
prokMSA_id:63692 Saccharothrix sp. 99-10-550A complete 
2.30.1.12.4.1118 OTU 1 seq
prokMSA_id:63557 Lentzea albida strain 37-28 
2.30.1.12.5 AMY.ORIENTALIS_SUBGROUP 56 seqs
2.30.1.12.5.1119 OTU 56 seqs
prokMSA_id:12301 Cellulomonas cellulans DSM 43879
prokMSA_id:12302 Cellulomonas cellulans IFO 15013
prokMSA_id:12303 Cellulomonas cellulans IFO 16148
prokMSA_id:12308 Cellulomonas cellulans str. MSD 20106
prokMSA_id:12309 Oerskovia xanthineolytica NCIMB 11025
prokMSA_id:12312 Cellulomonas pachnodae str. VPCX2
prokMSA_id:12335 Cellulomonas cellulans
prokMSA_id:12542 Bogoriella caseilytica HKI 0088
prokMSA_id:12700 Kineosporia aurantiaca JCM 3230 . AB003931
prokMSA_id:12940 Saccharopolyspora spinosa str. A83543.1 DSM 44228
prokMSA_id:12943 Saccharopolyspora taberi str. LL-WRAT-210 DSM 43856
prokMSA_id:12944 Saccharopolyspora hirsuta subsp. hirsuta ATCC 27875
prokMSA_id:13003 Amycolatopsis coloradensis NRRL 3218
prokMSA_id:13011 Saccharomonospora caesia str. SB-01
prokMSA_id:13014 Saccharomonospora caesia str. SB-22
prokMSA_id:13016 Prauserella rugosa DSM 43194
prokMSA_id:13023 Saccharomonospora caesia str. SB-58
prokMSA_id:13029 Saccharomonospora caesia str. K163 DSM 43068
prokMSA_id:13030 Saccharomonospora azurea str. K161; NA128
prokMSA_id:17556 Prauserella salina 
prokMSA_id:19135 Saccharomonospora halophila strain DSM 44411T
prokMSA_id:25429 Cellulomonas sp. KMaC5 
prokMSA_id:26533 Cellulomonas sp. MN 60.3 isolate MN 60.3
prokMSA_id:39735 Cellulomonas sp. d20 strain d20
prokMSA_id:40462 Actinokineospora terrae 
prokMSA_id:41579 Crossiella equi 
prokMSA_id:51483 Amycolatopsis coloradensis strain DSM 44225T
prokMSA_id:52667 Cellulomonas variformis strain MX5
prokMSA_id:54677 Nocardia lactamdurans and 23S genes and ITS1
prokMSA_id:59482 Amycolatopsis balhimycetica strain DSM 44591T
prokMSA_id:59483 Amycolatopsis vancoresmycetica strain DSM 44592T
prokMSA_id:59492 Amycolatopsis japonica strain DSM 44213T AJ508236
prokMSA_id:59958 Amycolatopsis sp. GY207 
prokMSA_id:59962 Amycolatopsis sp. GY293 
prokMSA_id:59963 Amycolatopsis sp. GY248 
prokMSA_id:59964 Amycolatopsis sp. GY211 
prokMSA_id:59965 Amycolatopsis sp. GY249 
prokMSA_id:59966 Amycolatopsis sp. GY246 
prokMSA_id:59969 Amycolatopsis sp. GY091 AY129761
prokMSA_id:59970 Amycolatopsis sp. GY080 AY129760
prokMSA_id:62747 Xylanomonas cellulosilytica 
prokMSA_id:63752 Amycolatopsis mediterranei strain KCTC 1739T 
prokMSA_id:63975 Amycolatopsis sp. GY109 
prokMSA_id:67634 Amycolatopsis mediterranei strain F1/24 
prokMSA_id:67635 Amycolatopsis mediterranei strain DSM 46095 
prokMSA_id:73058 Promicromonospora sp. IFO 16225 AB056131
prokMSA_id:77900 Cellulosimicrobium cellulans 
prokMSA_id:81576 Cellulomonas sp. CR1-1 
prokMSA_id:84538 Cellulomonas sp. CJ10597 
prokMSA_id:86751 Xylanibacterium ulmi complete AY273185
prokMSA_id:88192 Amycolatopsis plumensis 
prokMSA_id:88338 gamma clone HN1-47 
prokMSA_id:88945 Cellulomonadaceae 10001 
prokMSA_id:91582 Amycolatopsis coloradensis strain MSNU 22096T
prokMSA_id:91736 Amycolatopsis mediterranei strain IMSNU 20056T
prokMSA_id:91993 Amycolatopsis tolypophorous strain IMSNU 20061T
2.30.1.12.6 SCM.VIRIDIS_SUBGROUP 1 seq
2.30.1.12.6.1120 OTU 1 seq
prokMSA_id:50134 actinobacterium MERTZ_2CM_348 
2.30.1.13 MYCOBACTERIUM_SUBDIVISION 196 seqs
2.30.1.13.1 MYCOBACTERIA_GROUP 63 seqs
2.30.1.13.1.1 MYB.TUBERCULOSIS_SUBGROUP 63 seqs
2.30.1.13.1.1.1125 OTU 1 seq
prokMSA_id:32952 clone HTDD3 
2.30.1.13.1.1.1123 OTU 2 seqs
prokMSA_id:13223 Mycobacterium ACE-41
prokMSA_id:83481 actinobacterium clone BPU241 
2.30.1.13.1.1.1121 OTU 1 seq
prokMSA_id:13086 Mycobacterium celatum str. 3 NCTC 12882
2.30.1.13.1.1.1124 OTU 9 seqs
prokMSA_id:12978 Actinosynnema pretiosum subsp. pretiosum NRRL B-16060. AF114
prokMSA_id:12996 Actinokineospora globicatena NRRL B-24048. AF114798
prokMSA_id:12997 Amycolatopsis orientalis subsp. orientalis DSM 40040 . X7695
prokMSA_id:35684 Amycolatopsis albidoflavus strain IMSNU 22139T
prokMSA_id:42880 Amycolatopsis sp. 1738 
prokMSA_id:71392 Naphthalene-utilizing IS13 AF531478
prokMSA_id:72155 Naphthalene-utilizing IS4 AF531475
prokMSA_id:92235 Mycobacterium sp. 'Bavariae' 
prokMSA_id:96538 Amycolatopsis fastidiosa AS 4.1172 
2.30.1.13.1.1.1128 OTU 1 seq
prokMSA_id:13032 Mycobacterium chlorophenolicum str. PCP-I DSM 43826
2.30.1.13.1.1.1129 OTU 1 seq
prokMSA_id:13033 Mycobacterium WF2 str. WF2
2.30.1.13.1.1.1126 OTU 1 seq
prokMSA_id:32216 Mycobacterium pulveris strain DSM 44222T
2.30.1.13.1.1.1130 OTU 1 seq
prokMSA_id:13055 Mycobacterium shimoidei ATCC 27962
2.30.1.13.1.1.1127 OTU 1 seq
prokMSA_id:78035 Mycobacterium elephantis strain FI-13900
2.30.1.13.1.1.1133 OTU 1 seq
prokMSA_id:13140 Mycobacterium triviale ATCC 23292
2.30.1.13.1.1.1134 OTU 1 seq
prokMSA_id:13158 Mycobacterium C2-3 str. C2-3
2.30.1.13.1.1.1135 OTU 1 seq
prokMSA_id:13160 Mycobacterium HE5 str. HE5
2.30.1.13.1.1.1131 OTU 36 seqs
prokMSA_id:13069 Mycobacterium hassiacum
prokMSA_id:13085 Mycobacterium terrae str. W-45 ATCC 15755 . X52925
prokMSA_id:13147 Mycobacterium sp. str. MCRO 7. X93033
prokMSA_id:13292 Gordonia IBT2679-051 str. IBT2679-051
prokMSA_id:13293 Gordonia 213E str. 213E
prokMSA_id:13294 Gordonia 213F str. 213F
prokMSA_id:13503 Rhodococcus ruber DSM 43338
prokMSA_id:13504 Rhodococcus YH1 str. YH1
prokMSA_id:13582 Rhodococcus 5/1 str. 5/1
prokMSA_id:13629 Nocardia asteroides. X57949
prokMSA_id:20961 Rhodococcus rhodochrous 
prokMSA_id:45201 Rhodococcus sp. 2N40 
prokMSA_id:49725 Mycobacterium sp. strain MCRO 24 X93031
prokMSA_id:50090 Nocardia sp. 1040 AB054924
prokMSA_id:51915 Gram positive B1G-1B 
prokMSA_id:64670 Rhodococcus sp. ARG-BN062 
prokMSA_id:64675 Rhodococcus sp. USA-AN012 
prokMSA_id:64753 Rhodococcus sp. E33 
prokMSA_id:67231 Rhodococcus aetherovorans strain Bc663 
prokMSA_id:67233 Rhodococcus aetherovorans strain 10bc312 
prokMSA_id:68351 Dietzia sp. E9_2 E1 oral isolate 
prokMSA_id:70020 Antarctic seawater R7241 AJ293818
prokMSA_id:70233 strain R7212 AJ278779
prokMSA_id:70795 Polar sea R7704 AJ295711
prokMSA_id:75621 Rhodococcus opacus strain CB 24-1 
prokMSA_id:75703 Rhodococcus opacus strain DNP14-5 
prokMSA_id:76659 Rhodococcus opacus strain DNP14-9 
prokMSA_id:81459 Nocardia veterana strain DSM 40777 complete 
prokMSA_id:81540 Nocardia sp. DSM 43253 complete 
prokMSA_id:81647 Nocardia cyriacigeorgica strain DSM 43005 complete 
prokMSA_id:82133 Rhodococcus gordoniae strain W4937 
prokMSA_id:82199 Rhodococcus gordoniae strain MTCC 1534 
prokMSA_id:82356 Nocardia veterana strain DSM 44445 complete 
prokMSA_id:83971 Rhodococcus sp. AN-22 
prokMSA_id:85556 Rhodococcus ruber M2 
prokMSA_id:90115 Nocardia neocaledonica 
2.30.1.13.1.1.1132 OTU 1 seq
prokMSA_id:67481 Mycobacterium septicum strain HXN500
2.30.1.13.1.1.1136 OTU 1 seq
prokMSA_id:28966 Mycobacterium agri strain DSM 44515T
2.30.1.13.1.1.1139 OTU 1 seq
prokMSA_id:13222 Mycobacterium PENDANT-38
2.30.1.13.1.1.1138 OTU 2 seqs
prokMSA_id:13228 Mycobacterium branderi str. H 52157 ATCC 51789 . X82234
prokMSA_id:18116 Mycobacterium branderi 
2.30.1.13.1.1.1137 OTU 1 seq
prokMSA_id:90701 DSSD26 
2.30.1.13.2 CORYNEBACTERIUM_GROUP 52 seqs
2.30.1.13.2.1 GRD.AMARAE_SUBGROUP 30 seqs
2.30.1.13.2.1.1140 OTU 2 seqs
prokMSA_id:88069 Gordonia rubripertinctus strain AGP1-3 
prokMSA_id:97225 Gordonia sp. IFM 10032 
2.30.1.13.2.1.1142 OTU 27 seqs
prokMSA_id:13283 Gordonia terrae
prokMSA_id:13284 Gordonia terrae str. MZ 230973. AF154833
prokMSA_id:13296 Gordonia amarae
prokMSA_id:13299 Gordonia amarae str. SE-102 ATCC 27809
prokMSA_id:13300 Gordonia amarae str. ASF3
prokMSA_id:13313 Gordonia RR str. RR
prokMSA_id:13324 Gordonia bronchialis
prokMSA_id:13574 Rhodococcus marinonascens. X80617
prokMSA_id:16517 Gordonia terrae strain COE-O1 
prokMSA_id:17608 Gordonia westfalica strain Kb1/Kb2
prokMSA_id:25110 Gordonia nitida 
prokMSA_id:25440 Nocardia paucivorans complete 
prokMSA_id:25722 Gordonia polyisoprenivorans strain:P8219
prokMSA_id:27224 Gordonia alkalivorans 
prokMSA_id:32142 Gordonia sp. strain J4 X85245
prokMSA_id:34222 Mycobacterium brumae 
prokMSA_id:35930 Gordonia sp. HD321 
prokMSA_id:38169 Gordonia namibiensis NAM-BN063B 
prokMSA_id:38457 Gordonia polyisoprenivorans 
prokMSA_id:41303 Gordonia namibiensis NAM-BN063A 
prokMSA_id:47244 Gordonia alkalivorans 
prokMSA_id:62869 Gordonia terrae AB111113 
prokMSA_id:69925 Gordonia rhizophera strain IFO16068T AB004729
prokMSA_id:72357 Mycobacterium fallax AF480600
prokMSA_id:73085 Gordonia sp. MN 110a isolate MN 110a AJ313023
prokMSA_id:82341 Nocardia paucivorans strain DSM 44386 complete 
prokMSA_id:90273 Gordonia nitida complete 
2.30.1.13.2.1.1143 OTU 1 seq
prokMSA_id:36832 Gordonia spumae strain T4
2.30.1.13.2.4 SK.PINIFORMIS_SUBGROUP 2 seqs
2.30.1.13.2.4.1144 OTU 2 seqs
prokMSA_id:13330 Skermania piniformis str. UQM3063 IFO 15059
prokMSA_id:46901 Skermania piniformis strain DSM 43998T AJ416152
2.30.1.13.2.5 WLM.MURALIS_SUBGROUP 2 seqs
2.30.1.13.2.5.1145 OTU 1 seq
prokMSA_id:13332 Williamsia muralis str. MA140/96
2.30.1.13.2.5.1146 OTU 1 seq
prokMSA_id:13333 Williamsia maris strain:SJS0289-JS1
2.30.1.13.2.6 DZ.MARIS_SUBGROUP 2 seqs
2.30.1.13.2.6.1147 OTU 1 seq
prokMSA_id:13342 Dietzia JTS6048-306 str. JTS6048-306
2.30.1.13.2.6.1148 OTU 1 seq
prokMSA_id:13345 Rhodococcus sp
2.30.1.13.2.9 COR.UREALYTICUM_SUBGROUP 4 seqs
2.30.1.13.2.9.1149 OTU 4 seqs
prokMSA_id:13385 Corynebacterium variabilis str. AC 256 NCDO 2097 . NONE
prokMSA_id:13386 Corynebacterium variabilis str. AC 256 DSM 20132. AJ222815
prokMSA_id:13389 Corynebacterium variabilis str. AC 256 NCIMB 9455 . X53185
prokMSA_id:64184 Corynebacterium sp. 'Triatoma infestans' 
2.30.1.13.2.10 COR.PSEUDOTUBERCULOSIS_SUBGROUP 1 seq
2.30.1.13.2.10.1150 OTU 1 seq
prokMSA_id:33029 Corynebacterium sp. ATCC43833 
2.30.1.13.2.11 COR.AFERMENTANS_SUBGROUP 2 seqs
2.30.1.13.2.11.1151 OTU 2 seqs
prokMSA_id:13445 Corynebacterium sp. str. 2023
prokMSA_id:69614 Corynebacterium imitans isolate 01-0063 
2.30.1.13.2.13 COR.MINUTISSIMUM_SUBGROUP 9 seqs
2.30.1.13.2.13.1152 OTU 9 seqs
prokMSA_id:13471 Corynebacterium striatum NCTC 764 . X84442
prokMSA_id:13472 Corynebacterium sp. str. UCL301
prokMSA_id:13473 Corynebacterium sp. str. UCL553
prokMSA_id:13474 Corynebacterium sp. str. UCL557
prokMSA_id:45813 Corynebacterium striatum 
prokMSA_id:50265 Corynebacterium sp. 61722 
prokMSA_id:70353 Corynebacterium simulans isolate 81-0613 
prokMSA_id:73498 Corynebacterium simulans isolate 00-0186 
prokMSA_id:74894 Rhodococcus sp
2.30.1.13.3 RCO.RHODOCHROUS_GROUP 1 seq
2.30.1.13.3.1155 OTU 1 seq
prokMSA_id:13509 Rhodococcus sp. str. LB1
2.30.1.13.6 RHODOCOCCUS_GROUP 80 seqs
2.30.1.13.6.1 RCO.OPACUS_SUBGROUP 57 seqs
2.30.1.13.6.1.1157 OTU 54 seqs
prokMSA_id:13526 Rhodococcus sp
prokMSA_id:13531 Rhodococcus globerulus DSM 43954
prokMSA_id:13533 Rhodococcus erythropolis DSM 43188 . X80618
prokMSA_id:13535 Nocardioides simplex ATCC 13260
prokMSA_id:13536 Rhodococcus sp. str. PH114
prokMSA_id:13537 Rhodococcus Q15 str. Q15. AF046885
prokMSA_id:13538 Rhodococcus 7/1 str. 7/1
prokMSA_id:13539 Rhodococcus sp. str. SRB1948-A07
prokMSA_id:13551 Rhodococcus erythropolis DSM 43066 . X79289
prokMSA_id:13552 Rhodococcus X309 str. X309
prokMSA_id:13554 str. STS_R2A_30
prokMSA_id:13555 Rhodococcus erythropolis str. DCL14
prokMSA_id:13556 Nocardioides simplex ATCC 19565
prokMSA_id:13557 Nocardioides simplex ATCC 19566
prokMSA_id:13566 Rhodococcus erythropolis. X76691
prokMSA_id:13576 Rhodococcus globerulus str. PWD1 NCIMB 12315 . U89713
prokMSA_id:21162 Nocardia calcarea strain:D3213
prokMSA_id:21207 Rhodococcus sp. UFZ-B528 
prokMSA_id:25209 Rhodococcus sp. EJP75 isolate EJP75
prokMSA_id:32093 Rhodococcus sp. MN 38 isolate MN 38 AJ313018
prokMSA_id:35214 Rhodococcus sp. 6S48 
prokMSA_id:35273 Rhodococcus sp. 67-BEN001 
prokMSA_id:38125 Rhodococcus erythropolis isolate EK5
prokMSA_id:44022 Rhodococcus sp. MB1 
prokMSA_id:45944 Rhodococcus sp. DTB 
prokMSA_id:50828 Rhodococcus erythropolis 
prokMSA_id:59274 Rhodococcus erythropolis strain NVI 00/50/6670 
prokMSA_id:59505 Rhodococcus erythropolis strain AJ270
prokMSA_id:59996 Rhodococcus sp. 4115 isolate 4115
prokMSA_id:61953 Rhodococcus sp. V4.BO.16 
prokMSA_id:64298 Rhodococcus erythropolis specimen-voucher CNCM 2204 
prokMSA_id:64669 Rhodococcus sp. 871-AN053 
prokMSA_id:64671 Rhodococcus sp. ENG-AN033 
prokMSA_id:64673 Rhodococcus sp. ARG-AN025 
prokMSA_id:64674 Rhodococcus sp. ARG-AN024 
prokMSA_id:64676 Rhodococcus sp. IND-AN014 
prokMSA_id:64677 Rhodococcus sp. 870-AN019 
prokMSA_id:64678 Rhodococcus sp. ANT-AN007 
prokMSA_id:65229 Rhodococcus erythropolis specimen-voucher CNCM 2207 
prokMSA_id:66280 Rhodococcus erythreus LCSA0TU10 
prokMSA_id:68494 Nocardia sp. H17-1 
prokMSA_id:69972 Rhodococcus erythropolis AB046362
prokMSA_id:72913 Rhodococcus sp. 122-AN065 AY044095
prokMSA_id:73025 Bromate-reducing B8 AF442524
prokMSA_id:81495 Nocardia globerula strain DSM 46019 complete 
prokMSA_id:82479 Rhodococcus sp. ADH 
prokMSA_id:82515 Rhodococcus sp. ADH and genes 
prokMSA_id:83380 Rhodococcus sp. BDC14 
prokMSA_id:88661 Rhodococcus erythropolis isolate MR32W
prokMSA_id:89889 Rhodococcus sp. J-5 
prokMSA_id:91239 Rhodococcus erythropolis 
prokMSA_id:93177 Rhodococcus sp. An28 isolate An28
prokMSA_id:93301 rhodococcus sp. wp20 isolate wp20
prokMSA_id:93735 Rhodococcus sp. An6 isolate An6
2.30.1.13.6.1.1156 OTU 1 seq
prokMSA_id:13553 Rhodococcus B1 str. B1
2.30.1.13.6.1.1159 OTU 1 seq
prokMSA_id:91591 W14 
2.30.1.13.6.1.1158 OTU 1 seq
prokMSA_id:37109 Rhodococcus sp. DK17 
2.30.1.13.6.2 RCO.FASCIANS_SUBGROUP 5 seqs
2.30.1.13.6.2.1161 OTU 1 seq
prokMSA_id:89578 Rhodococcus luteus isolate 7Y
2.30.1.13.6.2.1162 OTU 1 seq
prokMSA_id:59542 CAGY6 strain CAGY6 
2.30.1.13.6.2.1163 OTU 1 seq
prokMSA_id:13583 Rhodococcus 5/14 str. 5/14
2.30.1.13.6.2.1164 OTU 1 seq
prokMSA_id:13586 Rhodococcus sp. str. SRB1948-Z40
2.30.1.13.6.2.1160 OTU 1 seq
prokMSA_id:79369 Rhodococcus sp. MBIC01430 
2.30.1.13.6.4 NOC.ASTEROIDES_SUBGROUP 18 seqs
2.30.1.13.6.4.1165 OTU 2 seqs
prokMSA_id:63690 Nocardia sp. 99-08-244A 
prokMSA_id:82175 Nocardia sp. DSM 43399 complete 
2.30.1.13.6.4.1166 OTU 2 seqs
prokMSA_id:49884 Nocardia sp. R112 
prokMSA_id:93197 Dietzia maris strain 263 
2.30.1.13.6.4.1167 OTU 1 seq
prokMSA_id:48639 Nocardia sp. R147 
2.30.1.13.6.4.1168 OTU 1 seq
prokMSA_id:84206 Nocardia sp. IFM 0265 
2.30.1.13.6.4.1169 OTU 1 seq
prokMSA_id:13633 Nocardia Y9 str. Y9
2.30.1.13.6.4.1171 OTU 2 seqs
prokMSA_id:40439 Nocardia soli 
prokMSA_id:88995 Nocardia abscessus strain:KNJ59
2.30.1.13.6.4.1170 OTU 1 seq
prokMSA_id:75424 Nocardia sp. IFM 0425 
2.30.1.13.6.4.1172 OTU 1 seq
prokMSA_id:44760 Nocardia sp. R47 
2.30.1.13.6.4.1174 OTU 1 seq
prokMSA_id:52632 Nocardia sp. W433 
2.30.1.13.6.4.1173 OTU 1 seq
prokMSA_id:91839 Nocardia sp. IFM 10084 
2.30.1.13.6.4.1179 OTU 1 seq
prokMSA_id:47624 Nocardia sp. R133 
2.30.1.13.6.4.1178 OTU 1 seq
prokMSA_id:83908 Nocardia cyriacigeorgica 
2.30.1.13.6.4.1177 OTU 1 seq
prokMSA_id:40966 Nocardia africana SD880 
2.30.1.13.6.4.1176 OTU 1 seq
prokMSA_id:82059 Nocardia sp. DSM 46067 complete 
2.30.1.13.6.4.1175 OTU 1 seq
prokMSA_id:77166 Nocardia sp. IFM 0731 
2.30.2 THERMOANAEROBACTER_AND_RELATIVES 43 seqs
2.30.2.1 DFM.GEOTHERMICUM_GROUP 4 seqs
2.30.2.1.1182 OTU 2 seqs
prokMSA_id:13664 Desulfotomaculum thermosapovorans str. MLF DSM 6562
prokMSA_id:13681 Desulfotomaculum thermosapovorans str. MLF DSM 6562
2.30.2.1.1180 OTU 1 seq
prokMSA_id:13678 Desulfotomaculum acetoxidans str. 5575 DSM 771
2.30.2.1.1181 OTU 1 seq
prokMSA_id:47271 Desulfotomaculum sp. WW1 
2.30.2.2 SYNTROPHOMONAS_ASSEMBLAGE 8 seqs
2.30.2.2.1184 OTU 4 seqs
prokMSA_id:13687 Syntrophomonas MGB-C1 str. MGB-C1
prokMSA_id:34346 Pelospora glutarica strain WoGl3
prokMSA_id:66121 low G+C Gram-positive clone:KB11
prokMSA_id:72548 clone B10 AF455064
2.30.2.2.1183 OTU 2 seqs
prokMSA_id:13685 clone WCHB1-71
prokMSA_id:13690 clone WCHB1-82
2.30.2.2.1186 OTU 1 seq
prokMSA_id:77374 clone R6b2 
2.30.2.2.1185 OTU 1 seq
prokMSA_id:93240 firmicute clone Gitt-GS-89A
2.30.2.3 MOORELLA_GROUP 2 seqs
2.30.2.3.1187 OTU 2 seqs
prokMSA_id:13703 Moorella thermoacetica str. ET-5a
prokMSA_id:13705 Moorella thermoacetica ATCC 39073. M59121
2.30.2.4 TAR.MARIANENSIS_GROUP 2 seqs
2.30.2.4.1188 OTU 2 seqs
prokMSA_id:22146 Thermaerobacter subterraneus complete 
prokMSA_id:50462 Thermaerobacter nagasakiense 
2.30.2.5 DICTYOGLOMUS_GROUP 8 seqs
2.30.2.5.1 TTR.FERRIREDUCENS_SUBGROUP 2 seqs
2.30.2.5.1.1189 OTU 1 seq
prokMSA_id:65677 soil clone S098 
2.30.2.5.1.1190 OTU 1 seq
prokMSA_id:13729 clone WCHA1-37
2.30.2.5.3 DGL.THERMOPHILUM_SUBGROUP 4 seqs
2.30.2.5.3.1191 OTU 4 seqs
prokMSA_id:13733 Dictyoglomus thermophilum str. Rt46B.1
prokMSA_id:13735 Dictyoglomus thermophilum str. H-6-12 DSM 3960 . X69194
prokMSA_id:13737 clone OPS145
prokMSA_id:40372 firmicute FL01F09 
2.30.2.5.5 DH.ETHENOGENES_SUBGROUP 1 seq
2.30.2.5.5.1192 OTU 1 seq
prokMSA_id:82007 clone KD4-96 
2.30.2.5.6 ENVIRONMENTAL_CLONE_SAR202_SUBGROUP 1 seq
2.30.2.5.6.1193 OTU 1 seq
prokMSA_id:27198 clone C26-3 
2.30.2.6 THERMOANAEROBACTER_GROUP 19 seqs
2.30.2.6.1 TBM.THERMOSULFURIGENES_SUBGROUP 6 seqs
2.30.2.6.1.1195 OTU 4 seqs
prokMSA_id:13755 Thermoanaerobacterium xylanolyticum str. LX-II DSM 7097 . L0
prokMSA_id:13757 Thermoanaerobacterium thermosulfurigenes str. 4B ATCC 33743 
prokMSA_id:13760 Thermoanaerobium "lactoethylicum" str. ZE-1 DSM 9003. L09170
prokMSA_id:13763 Thermoanaerobacterium aotearoense str. JW/SL-NZ613
2.30.2.6.1.1194 OTU 2 seqs
prokMSA_id:13761 Thermoanaerobacterium saccharolyticum str. B6A-RI; B6A DSM 7
prokMSA_id:13762 Clostridium thermoamylolyticum DSM 2335
2.30.2.6.2 THERMOANAEROBACTER.KIVUI 1 seq
2.30.2.6.2.1196 OTU 1 seq
prokMSA_id:13765 Thermoanaerobacter kivui DSM 2030
2.30.2.6.3 TAB.ETHANOLICUS_SUBGROUP 5 seqs
2.30.2.6.3.1197 OTU 5 seqs
prokMSA_id:13767 Thermoanaerobacter sp. str. AB11 Ad
prokMSA_id:13791 str. from Siljan ring drill ~3 km down. NONE
prokMSA_id:13793 Thermoanaerobacter brockii subsp. lactiethylicus DSM 9801 . 
prokMSA_id:20103 isolate P-3 
prokMSA_id:29733 Thermoanaerobacter sulfurigignens 
2.30.2.6.5 TAB.BROCKII_SUBGROUP 7 seqs
2.30.2.6.5.1198 OTU 7 seqs
prokMSA_id:1223 Caldotoga fontana str. B4
prokMSA_id:16510 Thermoanaerobacter tengcongensis 
prokMSA_id:66677 Thermoanaerobacter tengcongensis strain MB4T section 196 of 
prokMSA_id:66680 Thermoanaerobacter tengcongensis strain MB4T section 9 of 24
prokMSA_id:66681 Thermoanaerobacter tengcongensis strain MB4T section 6 of 24
prokMSA_id:85550 Thermoanaerobacter subterraneus strain SL9 
prokMSA_id:87364 Thermoanaerobacter keratinophilus strain 2KXI 
2.30.3 SPOROMUSA_AND_RELATIVES 108 seqs
2.30.3.1 SPOROMUSA_GROUP 75 seqs
2.30.3.1.1 SLN.RUMINA_SUBGROUP 14 seqs
2.30.3.1.1.1201 OTU 1 seq
prokMSA_id:32169 rumen 4C3d-9 
2.30.3.1.1.1202 OTU 2 seqs
prokMSA_id:13812 Selenomonas ruminantium subsp. lactilytica JCM 6582 . AB0033
prokMSA_id:13813 clone RFP7
2.30.3.1.1.1203 OTU 8 seqs
prokMSA_id:15705 Anaeroplasma intermedium str. 5LA. NONE
prokMSA_id:15706 Anaeroplasma bactoclasticum str. JR ATCC 27112 . M25049
prokMSA_id:15707 Anaeroplasma varium str. A-2 ATCC 43167 . M23934
prokMSA_id:22408 rumen 3C28d-2 AB034129
prokMSA_id:31161 clone p-2400-55G5 
prokMSA_id:38382 rumen 3C28d-11 AB034131
prokMSA_id:41385 rumen 3C28d-9 AB034130
prokMSA_id:89481 rumen clone JRCJ49 
2.30.3.1.1.1200 OTU 2 seqs
prokMSA_id:29533 Propionispira arboris strain DSM 2179
prokMSA_id:30454 clone CR99-2-02 
2.30.3.1.1.1199 OTU 1 seq
prokMSA_id:13815 clone RFN69
2.30.3.1.2 VLN.PARVULA_SUBGROUP 32 seqs
2.30.3.1.2.1208 OTU 1 seq
prokMSA_id:57997 clone:G-39
2.30.3.1.2.1204 OTU 8 seqs
prokMSA_id:14222 Peptostreptococcus anaerobius str. LK16 ATCC 27227
prokMSA_id:14223 Peptostreptococcus anaerobius str. LK54 ATCC 27337
prokMSA_id:14224 Peptostreptococcus anaerobius str. LK54 ATCC 27337
prokMSA_id:14225 Peptostreptococcus sp. str. C. L04166
prokMSA_id:14227 Peptostreptococcus anaerobius str. LK54 ATCC 27337 . L04168
prokMSA_id:33092 Peptostreptococcus sp. oral clone CK035 
prokMSA_id:59563 Dialister sp. oral clone FY011 
prokMSA_id:89770 Peptostreptococcus anaerobius NCTC 11460 AY326462
2.30.3.1.2.1205 OTU 1 seq
prokMSA_id:46322 rumen 3C3d-7 
2.30.3.1.2.1206 OTU 14 seqs
prokMSA_id:14687 Exiguobacterium acetylicum. D55730
prokMSA_id:22657 Low G+C Gram-positive MPD-76 
prokMSA_id:23368 Dialister sp. ADV 04.01 
prokMSA_id:48207 clone p-1941-s962-3 
prokMSA_id:52521 clone p-922-s962-5 
prokMSA_id:55383 Dialister sp. oral clone MCE7_134 E2 
prokMSA_id:68355 Dialister sp. E2_20 E1 oral isolate 
prokMSA_id:68746 Glacial ice SB12K-2-2 
prokMSA_id:70158 Dialister sp. oral strain GBA27 AF287788
prokMSA_id:71202 Dialister sp. oral clone BS016 AF287786
prokMSA_id:72316 Dialister sp. oral clone BS095 AF287787
prokMSA_id:85145 Dialister invisus 
prokMSA_id:94802 clone Dpcom136 
prokMSA_id:95828 clone Dpcom123 AY371262
2.30.3.1.2.1207 OTU 1 seq
prokMSA_id:52223 human oral A43 
2.30.3.1.2.1210 OTU 1 seq
prokMSA_id:21762 Veillonella sp. oral clone AA050 
2.30.3.1.2.1209 OTU 6 seqs
prokMSA_id:19328 ckncm267-m5h2 
prokMSA_id:35000 Megasphaera sp. oral clone BB166 
prokMSA_id:52166 rumen 3C3d-18 
prokMSA_id:68342 Megasphaera sp. oral clone MCE3_141 P1 
prokMSA_id:74093 Megasphaera sp. oral clone BU057 AF385566
prokMSA_id:87238 Megasphaera genomosp. C1 
2.30.3.1.3 SPM.PAUCIVORANS_SUBGROUP 12 seqs
2.30.3.1.3.1212 OTU 2 seqs
prokMSA_id:13843 clone SJA-143. AJ009494
prokMSA_id:38891 clone CR99-7-11 
2.30.3.1.3.1213 OTU 2 seqs
prokMSA_id:13837 Anaerovibrio glycerini DSM 5192. AJ010960
prokMSA_id:52552 strain MR56A
2.30.3.1.3.1211 OTU 4 seqs
prokMSA_id:13834 Sporomusa paucivorans str. X DSM 3697 . M59117
prokMSA_id:13847 Sporomusa DR1/8 str. DR1/8. Y17763
prokMSA_id:21147 Sporomusa malonica strain DSM 5090 
prokMSA_id:25868 Sporomusa sphaeroides strain DSM 2875 
2.30.3.1.3.1214 OTU 4 seqs
prokMSA_id:13809 Selenomonas sputigena ATCC 35185 . NONE
prokMSA_id:17310 Selenomonas sputingena AF373023
prokMSA_id:95835 Clostridium sp. clone AC007 
prokMSA_id:95976 Clostridium sp. clone AC039 AY330127
2.30.3.1.4 PHA.FAECIUM_SUBGROUP 17 seqs
2.30.3.1.4.1218 OTU 2 seqs
prokMSA_id:22697 rumen 4C28d-16 
prokMSA_id:28188 rumen 3C28d-10 
2.30.3.1.4.1215 OTU 3 seqs
prokMSA_id:13852 Acidaminococcus fermentans str. VR4 DSM 20731 . X78017
prokMSA_id:13853 Acidaminococcus fermentans str. AO. X77951
prokMSA_id:20105 Acidaminococcus sp. ADV 255.99 
2.30.3.1.4.1216 OTU 1 seq
prokMSA_id:89655 rumen clone JRCI15 
2.30.3.1.4.1217 OTU 9 seqs
prokMSA_id:13856 clone RFN24
prokMSA_id:66181 clone IIA-26
prokMSA_id:83931 rumen clone BS16 
prokMSA_id:84160 rumen clone BF11 
prokMSA_id:84795 rumen clone BS2 
prokMSA_id:85413 rumen clone BF7 
prokMSA_id:85652 rumen clone BF14 
prokMSA_id:86614 rumen clone BS25 
prokMSA_id:89441 rumen clone JRCG58 
2.30.3.1.4.1219 OTU 1 seq
prokMSA_id:35430 equine intestinal sp. CL27 clone CL27
2.30.3.1.4.1220 OTU 1 seq
prokMSA_id:29289 mle1-9 
2.30.3.2 HELIOBACTERIUM_GROUP 33 seqs
2.30.3.2.1 DFI.DEHALOGENANS_SUBGROUP 26 seqs
2.30.3.2.1.1222 OTU 3 seqs
prokMSA_id:13863 Desulfitobacterium frappieri str. PCP-1
prokMSA_id:13879 clone SJA-118
prokMSA_id:60813 Desulfosporosinus sp. clone OR-M1 
2.30.3.2.1.1221 OTU 2 seqs
prokMSA_id:13891 Desulfitobacterium dehalogenans str. JW/IU-DC1 DSM 9161 . L2
prokMSA_id:13900 Desulfitobacterium sp. str. PCE1
2.30.3.2.1.1223 OTU 4 seqs
prokMSA_id:13884 Desulfosporosinus 5apy str. 5apy
prokMSA_id:27123 clone GOUTB5 
prokMSA_id:36188 Desulfosporosinus sp. PFB 
prokMSA_id:70866 Desulfosporosinus sp. LauIII isolate LauIII AJ302078
2.30.3.2.1.1224 OTU 15 seqs
prokMSA_id:13841 clone SJA-84
prokMSA_id:13896 clone SJA-19. AJ009454
prokMSA_id:13897 clone SJA-47. AJ009464
prokMSA_id:13898 Dehalobacter restrictus str. PER-K23
prokMSA_id:22205 clone d025 AF422637
prokMSA_id:26918 clone d011 
prokMSA_id:29474 clone d154 
prokMSA_id:56444 clone SHD-17 AJ306804
prokMSA_id:65481 SHD-71 AJ278167
prokMSA_id:65484 Dehalobacter sp. SHD-11 
prokMSA_id:66193 clone IA-18
prokMSA_id:66904 clone SHD-269
prokMSA_id:66905 clone SHD-262
prokMSA_id:66906 clone SHD-255 AJ306800
prokMSA_id:72453 SHA-67 AJ249096
2.30.3.2.1.1225 OTU 1 seq
prokMSA_id:23528 Thermophilic JA2 
2.30.3.2.1.1226 OTU 1 seq
prokMSA_id:13873 clone WCHB1-84
2.30.3.2.2 DFM.RUMINIS_SUBGROUP 7 seqs
2.30.3.2.2.1227 OTU 7 seqs
prokMSA_id:13656 Desulfotomaculum sp. DSM 7475. Y11580
prokMSA_id:13661 Desulfotomaculum thermobenzoicum. L15628
prokMSA_id:13671 Desulfotomaculum thermobenzoicum str. TSB DSM 6193
prokMSA_id:13677 Desulfotomaculum sp. DSM 7476. Y11578
prokMSA_id:13912 Desulfotomaculum sp. DSM 7440
prokMSA_id:30024 Desulfotomaculum sp. DSM 7474
prokMSA_id:51349 Desulfotomaculum thermobenzoicum strain DSM 6193 clone 11
2.30.4 EUBACTERIUM_AND_RELATIVES 177 seqs
2.30.4.1 C.COCCOIDES_GROUP 156 seqs
2.30.4.1.1 C.XYLANOLYTICUM_SUBGROUP 23 seqs
2.30.4.1.1.1228 OTU 2 seqs
prokMSA_id:25665 clone k010
prokMSA_id:44795 clone k033
2.30.4.1.1.1232 OTU 4 seqs
prokMSA_id:32267 human oral A34 
prokMSA_id:49856 sp. oral clone DO016 
prokMSA_id:62513 MDA2477 
prokMSA_id:68343 Lachnospiraceae oral clone MCE9_173 E4 
2.30.4.1.1.1231 OTU 3 seqs
prokMSA_id:30587 clone p-1028-a5 
prokMSA_id:40124 Butyrate-producing L2-50 
prokMSA_id:69958 clone HuCA19 AJ408971
2.30.4.1.1.1229 OTU 4 seqs
prokMSA_id:14026 clone RFN48
prokMSA_id:24781 clone HuCB40
prokMSA_id:33850 adhufec406 
prokMSA_id:37999 equine intestinal sp. PL05 clone PL05
2.30.4.1.1.1230 OTU 2 seqs
prokMSA_id:45298 equine intestinal sp. ML18 clone ML18
prokMSA_id:49346 equine intestinal sp. DL03 clone DL03
2.30.4.1.1.1234 OTU 1 seq
prokMSA_id:94718 Ruminococcus sp. I-52 isolate I-52
2.30.4.1.1.1236 OTU 1 seq
prokMSA_id:29915 equine intestinal sp. DW06 clone DW06
2.30.4.1.1.1235 OTU 1 seq
prokMSA_id:34632 equine intestinal sp. CL09 clone CL09
2.30.4.1.1.1233 OTU 4 seqs
prokMSA_id:13951 TW2 str. TW2
prokMSA_id:14047 clone RC27
prokMSA_id:22721 clone p-265-o5 
prokMSA_id:47477 clone p-217-o5 
2.30.4.1.1.1237 OTU 1 seq
prokMSA_id:28618 Firmicutes sp. oral clone BB124 
2.30.4.1.2 RUC.HANSENII_SUBGROUP 14 seqs
2.30.4.1.2.1238 OTU 1 seq
prokMSA_id:88362 clone YRCF11 
2.30.4.1.2.1239 OTU 1 seq
prokMSA_id:28218 clone HuCA5
2.30.4.1.2.1240 OTU 1 seq
prokMSA_id:30968 rumen 6C3d-13 
2.30.4.1.2.1241 OTU 6 seqs
prokMSA_id:13995 Ruminococcus schinkii str. B DSM 10518 . X94965
prokMSA_id:13996 Ruminococcus sp. str. Bie 41. X94964
prokMSA_id:31735 clone p-192-o5 
prokMSA_id:35015 equine intestinal sp. PL26 clone PL26
prokMSA_id:58008 clone:C-65
prokMSA_id:77537 A17 AF349417
2.30.4.1.2.1242 OTU 2 seqs
prokMSA_id:44401 human oral A72 
prokMSA_id:69560 Lachnospiraceae oral clone P4PC_43 P3 
2.30.4.1.2.1244 OTU 2 seqs
prokMSA_id:13987 cellulosolvens ATCC 43171 . L34613
prokMSA_id:13988 cellulosolvens ATCC 43171
2.30.4.1.2.1243 OTU 1 seq
prokMSA_id:42647 equine intestinal sp. ML01 clone ML01
2.30.4.1.3 EUB.SABURREUM_SUBGROUP 5 seqs
2.30.4.1.3.1245 OTU 5 seqs
prokMSA_id:13966 clone RC20
prokMSA_id:14281 Peptostreptococcus sp. str. 9succ1. X90471
prokMSA_id:22437 microorganism clone Col68
prokMSA_id:33545 equine intestinal sp. DW11 clone DW11
prokMSA_id:88402 clone YRCF05 
2.30.4.1.4 RUC.GNAVUS_SUBGROUP 51 seqs
2.30.4.1.4.1246 OTU 2 seqs
prokMSA_id:22158 clone p-1608-c5 
prokMSA_id:37134 clone p-2226-s959-3 
2.30.4.1.4.1247 OTU 3 seqs
prokMSA_id:13953 Clostridium aminophilum str. F VPI 14602 . L04165
prokMSA_id:68346 Lachnospiraceae oral clone MCE7_60 E1 
prokMSA_id:92316 Catonella sp. oral clone FL037 
2.30.4.1.4.1250 OTU 2 seqs
prokMSA_id:25842 clone p-204-o5 
prokMSA_id:31249 clone p-1051-a5 
2.30.4.1.4.1251 OTU 3 seqs
prokMSA_id:26772 actinobacterium MERTZ_21CM_154 
prokMSA_id:48844 actinobacterium MERTZ_0CM_320 
prokMSA_id:88650 rumen clone JRCG06 
2.30.4.1.4.1252 OTU 2 seqs
prokMSA_id:26562 adhufec217 
prokMSA_id:41212 adhufec295 AF132257
2.30.4.1.4.1248 OTU 1 seq
prokMSA_id:24546 Clostridium leptum 
2.30.4.1.4.1249 OTU 33 seqs
prokMSA_id:14087 Clostridium herbivorans str. 54408 ATCC 49925 . L34418
prokMSA_id:17263 equine intestinal sp. DL38 clone DL38
prokMSA_id:19446 clone p-379-o3 
prokMSA_id:19853 microorganism clone Cow38 AJ241779
prokMSA_id:21408 rumen 4C28d-8 
prokMSA_id:24175 clone p-5263-4Wb5 
prokMSA_id:26201 clone p-969-s962-5 
prokMSA_id:26513 equine intestinal sp. CL23 clone CL23
prokMSA_id:26949 equine intestinal sp. PL12 clone PL12
prokMSA_id:28914 clone p-2418-55G5 
prokMSA_id:29758 clone HuCA13
prokMSA_id:31119 equine intestinal sp. DL07 clone DL07
prokMSA_id:31554 clone HuCA28
prokMSA_id:33833 clone p-1321-a5 
prokMSA_id:34520 clone p-2743-24E5 
prokMSA_id:37325 equine intestinal sp. DL37 clone DL37
prokMSA_id:39012 clone HuCB37
prokMSA_id:41673 clone p-2176-s959-3 
prokMSA_id:44493 Shuttleworthia satelles 
prokMSA_id:45296 clone p-61-a5 
prokMSA_id:46103 clone HuCA23
prokMSA_id:47862 clone p-600-a5 
prokMSA_id:48918 clone p-334-a3 
prokMSA_id:49521 clone p-6-a5 
prokMSA_id:50499 clone p-4162-6Wa5 
prokMSA_id:50530 clone p-2016-s959-5 
prokMSA_id:50752 equine intestinal sp. DL26 clone DL26
prokMSA_id:68840 clone p-339-a3 
prokMSA_id:69696 clone:C-55 AB094155
prokMSA_id:70087 sp. oral clone EH006 AF385570
prokMSA_id:73645 sp. oral clone DN050 AF385507
prokMSA_id:81139 Butyrivibrio fibrisolvens 
prokMSA_id:96581 clone rc4-10 complete AY239429
2.30.4.1.4.1255 OTU 1 seq
prokMSA_id:16544 clone p-44-a5 
2.30.4.1.4.1253 OTU 3 seqs
prokMSA_id:14000 Ruminococcus productus ATCC 27340 . X94966
prokMSA_id:14006 Clostridium coccoides ATCC 29236 . M59090
prokMSA_id:52780 equine intestinal sp. DW01 clone DW01
2.30.4.1.4.1254 OTU 1 seq
prokMSA_id:19426 equine intestinal sp. ML36 clone ML36
2.30.4.1.5 BTV.FIBRISOLVENS_SUBGROUP 44 seqs
2.30.4.1.5.1256 OTU 3 seqs
prokMSA_id:14039 ramulus ATCC 29099 . L34623
prokMSA_id:36059 clone HuCA29
prokMSA_id:69909 ramulus AJ011522
2.30.4.1.5.1257 OTU 2 seqs
prokMSA_id:35147 Butyrate-producing A1-86 
prokMSA_id:97833 clone Dpcom126 
2.30.4.1.5.1258 OTU 33 seqs
prokMSA_id:14042 clone RC13
prokMSA_id:14044 Butyrivibrio fibrisolvens NCDO 2223. X89977
prokMSA_id:14045 Butyrivibrio fibrisolvens str. H10b
prokMSA_id:14048 Butyrivibrio fibrisolvens str. T63
prokMSA_id:14050 Butyrivibrio fibrisolvens NCDO 2249. X89978
prokMSA_id:14051 Butyrivibrio fibrisolvens str. B835
prokMSA_id:14052 Butyrivibrio sp. str. sp45
prokMSA_id:14053 Butyrivibrio sp. str. sp42. AB003393
prokMSA_id:14054 Butyrivibrio fibrisolvens str. AR27. U77337
prokMSA_id:14055 Butyrivibrio fibrisolvens str. OB236
prokMSA_id:14056 Butyrivibrio fibrisolvens str. OR35. U77342
prokMSA_id:14057 Butyrivibrio fibrisolvens str. OR79
prokMSA_id:14058 Butyrivibrio fibrisolvens str. OB189
prokMSA_id:14061 Butyrivibrio fibrisolvens str. Bu 21 NCDO 2399. X89980
prokMSA_id:14062 clone RFN34. AB009190
prokMSA_id:14063 Butyrivibrio fibrisolvens NCDO 2397. X89979
prokMSA_id:14065 Butyrivibrio fibrisolvens str. CF3
prokMSA_id:18666 Pseudobutyrivibrio ruminis strain JK 626 AJ428549
prokMSA_id:19835 Pseudobutyrivibrio ruminis strain pC-XS2 
prokMSA_id:21769 Pseudobutyrivibrio xylanovorans strain JK 23/2 AJ428550
prokMSA_id:21868 equine intestinal sp. DL20 clone DL20
prokMSA_id:23954 rumen 4C3d-11 AB034066
prokMSA_id:26725 Pseudobutyrivibrio ruminis strain pC-XS7 
prokMSA_id:36497 Pseudobutyrivibrio xylanovorans strain Mz 5 AJ428548
prokMSA_id:36852 Butyrivibrio cf. fibrisolvens EAT6 
prokMSA_id:42103 rumen 4C3d-7 
prokMSA_id:45953 Butyrivibrio fibrisolvens strain 16.4
prokMSA_id:70650 Butyrivibrio fibrisolvens AY029616
prokMSA_id:74850 Pseudobutyrivibrio ruminis strain pC-XS6 
prokMSA_id:89082 clone YRCB16 
prokMSA_id:89338 clone YRCD19 
prokMSA_id:90635 clone YRCA01 AY311600
prokMSA_id:92464 Butyrivibrio fibrisolvens strain 0/10 AY347530
2.30.4.1.5.1259 OTU 1 seq
prokMSA_id:44330 Butyrate-producing T1-815 
2.30.4.1.5.1262 OTU 2 seqs
prokMSA_id:21459 clone p-952-s962-5 
prokMSA_id:31083 clone p-907-s962-5 
2.30.4.1.5.1261 OTU 1 seq
prokMSA_id:14043 clone RF22
2.30.4.1.5.1260 OTU 1 seq
prokMSA_id:44776 adhufec310 
2.30.4.1.5.1263 OTU 1 seq
prokMSA_id:48572 Pseudobutyrivibrio xylanovorans strain JK 633
2.30.4.1.6 EUB.VENTRIOSUM_SUBGROUP 3 seqs
2.30.4.1.6.1265 OTU 1 seq
prokMSA_id:49088 adhufec236 
2.30.4.1.6.1264 OTU 2 seqs
prokMSA_id:24522 clone p-3487-9F3 
prokMSA_id:94794 Firmicute clone S15B-MN35
2.30.4.1.7 LCN.MULTIPARA_SUBGROUP 2 seqs
2.30.4.1.7.1266 OTU 2 seqs
prokMSA_id:14076 eligens ATCC 27750 . L34420
prokMSA_id:58012 clone:C-72
2.30.4.1.8 C.POLYSACCHAROLYTICUM_SUBGROUP 8 seqs
2.30.4.1.8.1267 OTU 1 seq
prokMSA_id:47342 equine intestinal sp. CL18 clone CL18
2.30.4.1.8.1268 OTU 1 seq
prokMSA_id:34139 clone p-1573-b5 
2.30.4.1.8.1270 OTU 2 seqs
prokMSA_id:14091 clone RC10. AF001702
prokMSA_id:90162 rumen clone JRCI29 
2.30.4.1.8.1269 OTU 2 seqs
prokMSA_id:14096 Catonella morbi ATCC 51271 . X87151
prokMSA_id:40708 Catonella sp. oral clone EZ006 
2.30.4.1.8.1271 OTU 1 seq
prokMSA_id:14080 clone RF24
2.30.4.1.8.1272 OTU 1 seq
prokMSA_id:14081 ruminantium str. GA 195 ATCC 17233
2.30.4.1.9 C.AMINOVALERICUM_SUBGROUP 6 seqs
2.30.4.1.9.1273 OTU 5 seqs
prokMSA_id:14100 clone M30. U68616
prokMSA_id:14101 Clostridium XB90 str. XB90
prokMSA_id:38211 from anoxic bulk soil clone BSV51
prokMSA_id:95597 Clostridium sp. clone AC036 
prokMSA_id:97059 Clostridium sp. clone AC014 
2.30.4.1.9.1274 OTU 1 seq
prokMSA_id:41178 clone p-211-o5 
2.30.4.2 C.PROPIONICUM_GROUP 1 seq
2.30.4.2.2 C.COLINUM_SUBGROUP 1 seq
2.30.4.2.2.1275 OTU 1 seq
prokMSA_id:14111 str. RT
2.30.4.3 C.LENTOCELLUM_GROUP 4 seqs
2.30.4.3.1276 OTU 3 seqs
prokMSA_id:14128 Epulopiscium sp. str. morphotype B
prokMSA_id:14129 Epulopiscium sp. str. morphotype A2
prokMSA_id:14130 Epulopiscium fishelsoni str. Red Sea A2
2.30.4.3.1277 OTU 1 seq
prokMSA_id:39815 equine intestinal sp. CL33 clone CL33
2.30.4.5 C.LITUSEBURENSE_GROUP 16 seqs
2.30.4.5.2 C.STICKLANDII_SUBGROUP 4 seqs
2.30.4.5.2.1278 OTU 2 seqs
prokMSA_id:14177 Filifactor villosus ATCC 33388 . X73452
prokMSA_id:60259 Filifactor villosus strain DSM1645 
2.30.4.5.2.1279 OTU 2 seqs
prokMSA_id:14175 Clostridium sticklandii str. HF ATCC 12662 . M26494
prokMSA_id:66195 clone IA-11
2.30.4.5.3 C.PARADOXUM_SUBGROUP 1 seq
2.30.4.5.3.1280 OTU 1 seq
prokMSA_id:14189 Clostridium paradoxum str. JW-YL-7 DSM 7308
2.30.4.5.5 C.BIFERMENTANS_SUBGROUP 9 seqs
2.30.4.5.5.1281 OTU 9 seqs
prokMSA_id:14202 Clostridium ghoni NCIMB 10636 . X73451
prokMSA_id:14207 Clostridium bifermentans NCIMB 10716 . X73437
prokMSA_id:14209 Clostridium bifermentans str. DPH-1
prokMSA_id:29530 C.bifermentans X75906
prokMSA_id:46716 Clostridium sordellii 
prokMSA_id:51941 Clostridium bifermentans 
prokMSA_id:75054 Swine manure RT-4B 
prokMSA_id:76631 Swine manure RT-1A 
prokMSA_id:76955 Swine manure RT-5A 
2.30.4.5.6 C.LITUSEBURENSE 1 seq
2.30.4.5.6.1282 OTU 1 seq
prokMSA_id:22606 microorganism clone Cow49
2.30.4.5.7 C.GLYCOLICUM_SUBGROUP 1 seq
2.30.4.5.7.1283 OTU 1 seq
prokMSA_id:18262 clone p-248-o5 
2.30.5 C.PURINOLYTICUM_GROUP 6 seqs
2.30.5.1 C.PURINOLYTICUM_SUBGROUP 6 seqs
2.30.5.1.1285 OTU 5 seqs
prokMSA_id:14235 limosum ATCC 8486 . M59120
prokMSA_id:14240 callanderi str. FD DSM 3662
prokMSA_id:14241 Clostridium 'Butyribacterium methylotrophicum'
prokMSA_id:14242 limosum str. PM31
prokMSA_id:14243 limosum str. kist612
2.30.5.1.1284 OTU 1 seq
prokMSA_id:14250 thermomarinus
2.30.6 ANAEROBIC_HALOPHILES 9 seqs
2.30.6.3 HALOANAEROBIUM_GROUP 9 seqs
2.30.6.3.3 HAN.PRAEVALENS_SUBGROUP 9 seqs
2.30.6.3.3.1286 OTU 9 seqs
prokMSA_id:14313 Haloanaerobium salsugo str. VS-752 ATCC 51327. L22890
prokMSA_id:14314 Haloanaerobium lacuroseus str. H200 DSM 10165
prokMSA_id:14315 Haloanaerobium acetoethylicum str. EIGI DSM 3532 . U32594
prokMSA_id:14316 Haloanaerobium acetoethylicum str. EIGI DSM 3532
prokMSA_id:14318 Haloanaerobium praevalens ATCC 33744 . M59123
prokMSA_id:14321 Haloanaerobium praevalens str. strain S-8 from the can of Sw
prokMSA_id:14324 Haloanaerobium saccharolyticum subsp. senegalense DSM 7379
prokMSA_id:14326 Haloanaerobium saccharolyticum subsp. saccharolyticum str. Z
prokMSA_id:49598 Halanaerobium sp. KT-2/3-3 
2.30.7 BACILLUS-LACTOBACILLUS-STREPTOCOCCUS_SUBDIVISION 1051 seqs
2.30.7.1 ALICYCLOBACILLUS_GROUP 45 seqs
2.30.7.1.1290 OTU 4 seqs
prokMSA_id:18589 Alicyclobacillus acidoterrestris 
prokMSA_id:18608 Alicyclobacillus acidoterrestris 
prokMSA_id:23511 Alicyclobacillus acidoterrestris strain DSM 3922T
prokMSA_id:30963 Alicyclobacillus acidoterrestris strain:DSM 3924
2.30.7.1.1287 OTU 2 seqs
prokMSA_id:23447 Alicyclobacillus sp. TA 67T strain:TA 67T AB059677
prokMSA_id:58498 Alicyclobacillus acidiphilus 
2.30.7.1.1289 OTU 2 seqs
prokMSA_id:14352 Sulfobacillus acidophilus str. NAL DSM 10332 . AF050169
prokMSA_id:33263 Sulfobacillus yellowstonensis strain YTF-1 
2.30.7.1.1288 OTU 30 seqs
prokMSA_id:13923 Heliobacterium chlorum ATCC 35205
prokMSA_id:14334 Alicyclobacillus acidocaldarius str. 104-1A DSM 446
prokMSA_id:14345 Alicyclobacillus acidoterrestris DSM 3923. X60743
prokMSA_id:14347 Alicyclobacillus acidocaldarius str. TDBrock 115-8 ATCC 4303
prokMSA_id:18771 Alicyclobacillus sp. KHC 3 AB060163
prokMSA_id:23797 Alicyclobacillus sp. strain FR-6
prokMSA_id:24070 Alicyclobacillus acidocaldarius strain:DSM 453 AB059663
prokMSA_id:26438 Alicyclobacillus acidocaldarius AB060166
prokMSA_id:27630 Alicyclobacillus acidocaldarius strain:DSM 454 AB059664
prokMSA_id:27818 Alicyclobacillus acidocaldarius strain:DSM 449 AB059671
prokMSA_id:30162 Alicyclobacillus sp. strain FR-3 AJ133634
prokMSA_id:30727 Alicyclobacillus acidocaldarius strain:DSM 11297 AB059674
prokMSA_id:32908 Alicyclobacillus acidocaldarius strain:DSM 451 AB059672
prokMSA_id:34592 Alicyclobacillus acidocaldarius strain:DSM 452 AB059673
prokMSA_id:34693 Alicyclobacillus sp. DSM 6481 strain:DSM 6481 AB059666
prokMSA_id:36997 Alicyclobacillus sp. KHA 31 
prokMSA_id:37680 Alicyclobacillus sp. DSM 12490 strain:DSM 12490 AB059669
prokMSA_id:38100 Alicyclobacillus acidocaldarius AB042056
prokMSA_id:38406 Alicyclobacillus acidocaldarius strain:DSM 455
prokMSA_id:39237 Alicyclobacillus sp. FR-3 strain:DSM 11983
prokMSA_id:41120 Alicyclobacillus sp. MIH 332 AB060165
prokMSA_id:41149 Alicyclobacillus sp. MIH 2 
prokMSA_id:45336 Alicyclobacillus hesperidum strain:DSM 11984T
prokMSA_id:48546 Alicyclobacillus sp. UZ 1 AB060161
prokMSA_id:49429 Alicyclobacillus acidocaldarius strain:DSM 448 AB059670
prokMSA_id:55934 Alicyclobacillus acidocaldarius strain DSM 446
prokMSA_id:63594 Alicyclobacillus acidocaldarius subsp. rittmannii AJ493667
prokMSA_id:73860 Heliobacterium sulfidophilum complete AF249678
prokMSA_id:94906 Alicyclobacillus acidocaldarius subsp. rittmannii AB089859
prokMSA_id:95977 Alicyclobacillus vulcanis 
2.30.7.1.1291 OTU 4 seqs
prokMSA_id:14330 str. ALV. M79375
prokMSA_id:66335 Sulfobacillus sp. YTF3 
prokMSA_id:70761 ALV M80290
prokMSA_id:72521 ALV AH003322
2.30.7.1.1293 OTU 2 seqs
prokMSA_id:14331 Bacillus tusciae DSM 2912 . Z26933
prokMSA_id:85455 Bacillus tusciae 
2.30.7.1.1292 OTU 1 seq
prokMSA_id:14348 Sulfobacillus thermosulfidooxidans
2.30.7.4 PAE.POLYMYXA_GROUP 103 seqs
2.30.7.4.1 PAE.MACQUARIENSIS_SUBGROUP 27 seqs
2.30.7.4.1.1294 OTU 27 seqs
prokMSA_id:14529 Bacillus sp. str. Ak1
prokMSA_id:14532 Bacillus ICPS6 str. ICPS6
prokMSA_id:14545 Bacillus thermoleovorans str. B23
prokMSA_id:14557 Bacillus TA2.A1 str. TA2.A1. AF113512
prokMSA_id:17856 clone t004 AF422579
prokMSA_id:28593 Geobacillus sacchari 
prokMSA_id:33289 Bacillus sp. TX3 
prokMSA_id:34397 Bacillus sp. YNPRH2P-2 
prokMSA_id:39078 Bacillus sp. S 
prokMSA_id:47880 Bacillus thermoglucosidasius 
prokMSA_id:60459 Geobacillus stearothermophilus strain 3 complete 
prokMSA_id:60460 Geobacillus stearothermophilus strain 32A complete 
prokMSA_id:64883 Paenibacillus polymyxa strain GBR-1 
prokMSA_id:69206 Geobacillus caldoxylosilyticus isolate B70
prokMSA_id:70976 Bacillus sp. M10EXG 
prokMSA_id:71319 Bacillus thermoterrestris strain TS2A AJ271738
prokMSA_id:71833 synthetic wastewater tmbr11-7 complete AF309812
prokMSA_id:71897 synthetic wastewater tmbr11-6 complete AF309811
prokMSA_id:74137 Bacillus thermoterrestris strain TS24A AJ271739
prokMSA_id:74615 Geobacillus stearothermophilus strain 28 complete 
prokMSA_id:86870 Geobacillus caldoxylosilyticus isolate F17
prokMSA_id:86955 Geobacillus caldoxylosilyticus isolate Ti
prokMSA_id:87339 Geobacillus caldoxylosilyticus isolate Tj
prokMSA_id:87594 Geobacillus caldoxylosilyticus isolate F38
prokMSA_id:94822 Paenibacillus abekawaensis strain:MG1
prokMSA_id:96582 Geobacillus sp. R-7653 
prokMSA_id:98371 Paenibacillus sp. R-7652 AY382189
2.30.7.4.2 PAE.VALIDUS_SUBGROUP 73 seqs
2.30.7.4.2.1295 OTU 1 seq
prokMSA_id:14413 Thermobacillus xylanolyticus str. XE
2.30.7.4.2.1296 OTU 41 seqs
prokMSA_id:14428 Paenibacillus polymyxa IAM 13419
prokMSA_id:18657 Paenibacillus sp. CM1 
prokMSA_id:18675 Bacillus sp. USC14 complete AF346495
prokMSA_id:22302 Paenibacillus turicensis clone A2 complete 
prokMSA_id:32167 firmicute clone SM1E07 
prokMSA_id:34110 Bacillus sp. YNPRH6P-1 
prokMSA_id:36679 Paenibacillus turicensis clone A1 complete 
prokMSA_id:37147 Paenibacillus turicensis clone A3b 
prokMSA_id:38089 Paenibacillus sp. LMG 20244 strain LMG 20244
prokMSA_id:38958 Paenibacillus polymyxa strain DSM 36T
prokMSA_id:46666 Paenibacillus turicensis clone B3 complete 
prokMSA_id:47416 Paenibacillus turicensis clone A3a complete 
prokMSA_id:47969 Paenibacillus turicensis clone B2 complete 
prokMSA_id:49631 Paenibacillus turicensis clone B1 complete 
prokMSA_id:60266 Paenibacillus polymyxa 3' 
prokMSA_id:60269 Paenibacillus polymyxa 5' and 3' 
prokMSA_id:66281 Paenibacillus sp. LCSAOTU12 
prokMSA_id:66468 clone cvf77076 
prokMSA_id:69451 low G+C Gram-positive CD21G01 AY145667
prokMSA_id:71008 Bacillus sp. CZ181a isolate CZ181a AJ299570
prokMSA_id:74384 clone 49522 AF097817
prokMSA_id:74627 Bacillus sp. CZ225 isolate CZ225
prokMSA_id:77280 Earthworm gut MH21 
prokMSA_id:77745 Paenibacillus apiarius AB073201
prokMSA_id:80984 Paenibacillus favisporus strain GMP01 
prokMSA_id:83394 Bacillus sp. 'Smarlab BioMol-2301283' 
prokMSA_id:85775 Paenibacillus polymyxa AB042063
prokMSA_id:88800 Paenibacillus favisporus strain GMP03 
prokMSA_id:89987 Paenibacillus polymyxa strain WY110 
prokMSA_id:92059 Paenibacillus polymyxa strain KCTC3717 AY359637
prokMSA_id:92293 Paenibacillus polymyxa strain GBR-180 
prokMSA_id:92405 Paenibacillus polymyxa strain GBR-447 
prokMSA_id:92583 Paenibacillus polymyxa strain KCTC3554 
prokMSA_id:92624 Paenibacillus polymyxa strain GBR-477 
prokMSA_id:92641 Paenibacillus polymyxa strain KCTC1663 
prokMSA_id:92649 Paenibacillus polymyxa strain GBR-2 
prokMSA_id:92844 Paenibacillus polymyxa strain KCTC3627 
prokMSA_id:93032 Paenibacillus polymyxa strain GBR-465 
prokMSA_id:93130 Paenibacillus polymyxa strain GBR-325 
prokMSA_id:93269 Paenibacillus cineris strain LMG 21976 AJ575659
prokMSA_id:93790 Paenibacillus cineris strain LMG 18439T AJ575658
2.30.7.4.2.1297 OTU 24 seqs
prokMSA_id:13840 clone SJA-29
prokMSA_id:13855 Succiniclasticum ruminis str. SE10 DSM 9236 . X81137
prokMSA_id:13857 clone RFN45
prokMSA_id:13932 clone RFP18. AF001776
prokMSA_id:14396 DA116 
prokMSA_id:28024 str. 31293 
prokMSA_id:31092 Propionispora vibrioides isolate FKBS1
prokMSA_id:43825 Paenibacillus sp. DS-1 
prokMSA_id:60705 Sporomusa aerovorans strain TMAM3
prokMSA_id:60709 Sporomusa aerovorans strain TMAO3
prokMSA_id:66173 clone IIIA-10
prokMSA_id:66174 clone IIIA-1
prokMSA_id:74125 Paenibacillus sp. 7-5 AB043868
prokMSA_id:77768 Propionispora hippei clone 5
prokMSA_id:81047 clone KD2-97 
prokMSA_id:82164 clone KD2-28 
prokMSA_id:82350 clone ZZ12C4 
prokMSA_id:82841 rumen clone BS24 
prokMSA_id:83021 rumen clone BS18 
prokMSA_id:85094 rumen clone BS3 
prokMSA_id:85199 rumen clone BF5 
prokMSA_id:85821 rumen clone BS15 
prokMSA_id:86218 rumen clone BS1 
prokMSA_id:96844 Paenibacillus sp. R-6507 AY397765
2.30.7.4.2.1299 OTU 5 seqs
prokMSA_id:20396 Gram-positive MOL361 complete 
prokMSA_id:29728 clone p-66-a5 
prokMSA_id:41555 clone S24-10
prokMSA_id:45887 clone p-79-a5 
prokMSA_id:66528 clone cvf74069 
2.30.7.4.2.1298 OTU 2 seqs
prokMSA_id:14430 Bacillus GL1 str. GL1. AB024598
prokMSA_id:34798 Paenibacillus granivorans 
2.30.7.4.6 PAE.POLYMYXA_SUBGROUP 3 seqs
2.30.7.4.6.1300 OTU 1 seq
prokMSA_id:62685 low G+C Gram-positive clone ML635J-45 
2.30.7.4.6.1301 OTU 1 seq
prokMSA_id:63836 Bacillus sp. clone ML1228J-1 
2.30.7.4.6.1302 OTU 1 seq
prokMSA_id:62679 low G+C Gram-positive clone ML635J-5 
2.30.7.8 MRC.HALOPHILUS_SUBGROUP 16 seqs
2.30.7.8.1303 OTU 16 seqs
prokMSA_id:14456 Aneurinibacillus migulanus DSM 2895
prokMSA_id:14460 Aneurinibacillus thermoaerophilus str. L420-91 DSM 10154
prokMSA_id:14461 Aneurinibacillus thermoaerophilus DSM 10155
prokMSA_id:14465 Oxalophagus oxalicus str. Alt Ox1 DSM 5503 . X77840
prokMSA_id:14466 Oxalophagus oxalicus str. Alt Ox1 DSM 5503
prokMSA_id:14476 str. MBIC3303
prokMSA_id:22272 Thermoactinomyces sacchari KCTC 9790 complete 
prokMSA_id:25830 Thermoactinomyces thalpophilus KCTC 9789 complete 
prokMSA_id:26206 Thermoactinomyces putidus KCTC 3666 complete 
prokMSA_id:38737 Bacillus sp. HC5 
prokMSA_id:40292 compost 4-29 
prokMSA_id:62984 Exiguobacterium sp. clone T6-7 rrn 
prokMSA_id:71633 synthetic wastewater tmbr15-26 complete AF309816
prokMSA_id:72629 synthetic wastewater tmbr15-12 complete AF309813
prokMSA_id:81209 Exiguobacterium sp. BTAH1 
prokMSA_id:82008 Brevibacillus thermoruber 
2.30.7.9 SPOROLACTOBACILLUS_GROUP 54 seqs
2.30.7.9.2 B.RACEMILACTICUS 1 seq
2.30.7.9.2.1304 OTU 1 seq
prokMSA_id:14492 Bacillus racemilacticus str. M-5 IAM 12319
2.30.7.9.3 B.ALCALOPHILUS_SUBGROUP 53 seqs
2.30.7.9.3.1306 OTU 6 seqs
prokMSA_id:29692 clone PDSB115 
prokMSA_id:44055 sp. Lake Elmenteita isolate 3E1
prokMSA_id:88732 soil clone Dpcom59 
prokMSA_id:91416 Bacillus sp. US149 strain US149
prokMSA_id:91764 Bacillus sp. 6AG strain 6AG
prokMSA_id:94901 Bacillus thermoamylovorans strain R-7499 
2.30.7.9.3.1305 OTU 3 seqs
prokMSA_id:77182 Bacillus krulwichii AB086897
prokMSA_id:83730 Bacillus megaterium 
prokMSA_id:92147 Bacillus sp. A-09 
2.30.7.9.3.1310 OTU 1 seq
prokMSA_id:78009 Bacillus sp. TUT1007 
2.30.7.9.3.1311 OTU 1 seq
prokMSA_id:23919 sp. Lake Nakuru isolate 17N1
2.30.7.9.3.1307 OTU 6 seqs
prokMSA_id:17599 Sporosarcina ureae 
prokMSA_id:21885 str. 47083 
prokMSA_id:35322 Bacillus sp. strain NIBH P3M5 complete AB016269
prokMSA_id:47004 Bacillus aquamarinus 
prokMSA_id:71520 Bacillus hackensackii complete AY148429
prokMSA_id:87533 Bacillus sp. T5-12 
2.30.7.9.3.1308 OTU 34 seqs
prokMSA_id:14580 clone P54. U68679
prokMSA_id:14624 Bacillus benzoevorans str. YEO5
prokMSA_id:14631 DA015 
prokMSA_id:14638 Bacillus IDA624 str. IDA624. AJ236893
prokMSA_id:14641 clone DA036
prokMSA_id:14652 DA115 
prokMSA_id:14655 clone BPC094. AF154082
prokMSA_id:24853 soil clone 1104-1 
prokMSA_id:30044 soil clone 1448-1 
prokMSA_id:31103 Bacillus sp. N-1 
prokMSA_id:34585 soil clone 1200-1 
prokMSA_id:34978 Bacillus niacini 
prokMSA_id:46286 DA001 mark03 
prokMSA_id:50561 soil clone 309-1 
prokMSA_id:52810 soil clone 720-1 
prokMSA_id:69114 Bacillus senegalensis strain RS6 AF519466
prokMSA_id:69468 Bacillus arbutinivorans AF519469
prokMSA_id:69657 Bacillus djibelorensis AF519467
prokMSA_id:71081 Bacillus fumarioli strain LMG 17489 AJ250056
prokMSA_id:71713 Bacillus fumarioli strain LMG 18418 AJ250059
prokMSA_id:72071 Bacillus sp. strain LMG-19415 AJ276809
prokMSA_id:72371 Bacillus sp. LMG 20241 strain LMG 20241 AJ316313
prokMSA_id:72486 Bacillus fumarioli strain LMG 17492 AJ250057
prokMSA_id:73777 Bacillus fumarioli strain LMG 18409 AJ250058
prokMSA_id:73915 Bacillus sp. MK03 AB062678
prokMSA_id:74252 str. 86348 AF227865
prokMSA_id:81056 Bacillus drentensis strain LMG 21831
prokMSA_id:81391 Bacillus drentensis strain LMG 21830
prokMSA_id:81770 Bacillus bataviensis strain LMG 21833
prokMSA_id:81960 Bacillus bataviensis strain LMG 21832 AJ542507
prokMSA_id:87134 Bacillus sp. IDA1990 isolate IDA1990 AJ563536
prokMSA_id:88513 soil clone HS9-25 
prokMSA_id:90522 Bacillus sp. I17 AY307361
prokMSA_id:91686 Bacillus sp. KSM-P358 
2.30.7.9.3.1309 OTU 1 seq
prokMSA_id:92087 Bacillus sp. A-11 
2.30.7.9.3.1312 OTU 1 seq
prokMSA_id:29964 sp. Lake Bogoria isolate 9B1
2.30.7.10 B.MEGATERIUM_GROUP 187 seqs
2.30.7.10.1 B.STEAROTHERMOPHILUS_SUBGROUP 93 seqs
2.30.7.10.1.1314 OTU 34 seqs
prokMSA_id:14542 Bacillus pallidus DSM 3670
prokMSA_id:14554 Bacillus thermoalkalophilus DSM 6866. Z26931
prokMSA_id:14566 Bacillus sp. DSM 2349
prokMSA_id:14632 DA011 
prokMSA_id:15009 DA114 
prokMSA_id:19352 Bacillus sp. B-3 
prokMSA_id:56614 Bacillus sp. IZ3 
prokMSA_id:58658 Bacillus sp. IZ5 
prokMSA_id:58660 Bacillus sp. IZ4 
prokMSA_id:58661 Bacillus sp. H6 
prokMSA_id:58662 Bacillus sp. H2 
prokMSA_id:58663 Bacillus sp. H4 
prokMSA_id:58664 Bacillus sp. H5 
prokMSA_id:58665 Bacillus sp. H3 
prokMSA_id:58666 Bacillus sp. H1 
prokMSA_id:58667 Bacillus sp. G8 
prokMSA_id:58668 Bacillus sp. G7 
prokMSA_id:58670 Bacillus sp. G5 
prokMSA_id:58671 Bacillus sp. G3 
prokMSA_id:58672 Bacillus sp. G2 
prokMSA_id:58673 Bacillus sp. G1 
prokMSA_id:58674 Bacillus sp. F2 
prokMSA_id:58675 Bacillus sp. E3 
prokMSA_id:58676 Bacillus sp. F1 
prokMSA_id:58678 Bacillus sp. E1 
prokMSA_id:66290 Sporosarcina sp. LCSAOTU9 
prokMSA_id:74568 Bacillus sp. G4 
prokMSA_id:78091 Paenibacillus lautus strain C2
prokMSA_id:83727 Paenibacillus sp. 6495m-C2 isolate 6495m-C2 AJ509004
prokMSA_id:87853 Geobacillus sp. isolate F16
prokMSA_id:87910 Geobacillus sp. isolate Td
prokMSA_id:91397 Low G+C Gram-positive T134 strain:T134
prokMSA_id:91475 Bacillus sp. M31 strain:M31 AB116125
prokMSA_id:94874 Bacillus pallidus strain R-7748 
2.30.7.10.1.1315 OTU 4 seqs
prokMSA_id:14569 Bacillus sp. str. ICPS10
prokMSA_id:86785 Geobacillus sp. isolate F20
prokMSA_id:87915 Geobacillus sp. isolate F10
prokMSA_id:88727 Bacillus thermozeamaize AY288912
2.30.7.10.1.1313 OTU 47 seqs
prokMSA_id:14526 str. BD5-12
prokMSA_id:14533 Bacillus denitrificans DSM 466. Z26927
prokMSA_id:14534 Bacillus thermodenitrificans str. OHT-1. AB028234
prokMSA_id:14536 Bacillus thermodenitrificans str. NS. AF114424
prokMSA_id:14537 Bacillus thermodenitrificans str. S. AF114425
prokMSA_id:14538 Bacillus thermodenitrificans str. T4
prokMSA_id:14543 Bacillus thermoleovorans DSM 5366
prokMSA_id:14550 str. HTA1418
prokMSA_id:14551 Bacillus caldolyticus DSM 405. Z26924
prokMSA_id:14570 Bacillus thermodenitrificans DSM 465. Z26928
prokMSA_id:18188 Bacillus sp. Cimanggu AF228765
prokMSA_id:23483 Bacillus sp. C7 
prokMSA_id:23576 Bacillus vulcani strain 3S-1
prokMSA_id:25595 Bacillus stearothermophilus 
prokMSA_id:26066 Geobacillus subterraneus strain K 
prokMSA_id:41783 Bacillus sp. OS-ac-18 
prokMSA_id:42405 Bacillus stearothermophilus strain DSM 22T
prokMSA_id:46206 Geobacillus subterraneus strain 34 
prokMSA_id:56299 Bacillus sp. B2 
prokMSA_id:58669 Bacillus sp. G62 
prokMSA_id:58679 Bacillus sp. B6 
prokMSA_id:58680 Bacillus sp. B7 
prokMSA_id:58681 Bacillus sp. B5 
prokMSA_id:58682 Bacillus sp. B4 
prokMSA_id:58687 Bacillus sp. B3 
prokMSA_id:60018 ODP-193-14 AB084522
prokMSA_id:60019 ODP-193-02 AB084521
prokMSA_id:66045 Anoxybacillus kamchatkensis 
prokMSA_id:67723 Bacillus sp. TS-3 
prokMSA_id:78530 Bacillus sp. YMY1010 
prokMSA_id:78768 Geobacillus sp. YMTC1049 
prokMSA_id:89907 Geobacillus bogazici 
prokMSA_id:91058 Geobacillus thermodenitrificans strain:S63 AB116114
prokMSA_id:91139 Geobacillus thermodenitrificans strain:T1611 AB116102
prokMSA_id:91254 Geobacillus thermodenitrificans strain:T1620 AB116103
prokMSA_id:91295 Geobacillus thermodenitrificans strain:S64 AB116115
prokMSA_id:91321 Geobacillus thermodenitrificans strain:T1600 AB116108
prokMSA_id:91348 Geobacillus thermodenitrificans strain:T151 AB116109
prokMSA_id:91373 Geobacillus thermodenitrificans strain:T1690 AB116107
prokMSA_id:91379 Geobacillus thermodenitrificans strain:T1630 AB116105
prokMSA_id:91419 Geobacillus thermodenitrificans strain:S61 AB116112
prokMSA_id:91569 Geobacillus thermodenitrificans strain:M61 AB116110
prokMSA_id:91576 Geobacillus thermodenitrificans strain:M62 AB116111
prokMSA_id:91636 Geobacillus thermodenitrificans strain:S62 AB116113
prokMSA_id:91703 Geobacillus thermodenitrificans strain:T1621 AB116104
prokMSA_id:91739 Geobacillus thermodenitrificans strain:T1610 AB116101
prokMSA_id:91880 Geobacillus thermodenitrificans strain:T1660
2.30.7.10.1.1320 OTU 3 seqs
prokMSA_id:64299 Hyperthermophilic OGL-7B 
prokMSA_id:78614 Thermoactinomyces sp. 700375 
prokMSA_id:78879 Thermoactinomyces sp. 500275 
2.30.7.10.1.1319 OTU 1 seq
prokMSA_id:14558 unnamed organism
2.30.7.10.1.1318 OTU 1 seq
prokMSA_id:70679 Geobacillus thermoleovorans isolate T70
2.30.7.10.1.1317 OTU 1 seq
prokMSA_id:78838 Thermoactinomyces sp. C0170 
2.30.7.10.1.1316 OTU 2 seqs
prokMSA_id:33595 compost 4-75 
prokMSA_id:58685 Bacillus sp. B1 
2.30.7.10.4 B.SPOROTHERMODURANS_SUBGROUP 10 seqs
2.30.7.10.4.1321 OTU 1 seq
prokMSA_id:79671 B.circulans strain WSBC 20060
2.30.7.10.4.1323 OTU 1 seq
prokMSA_id:31296 clone PDSB092 
2.30.7.10.4.1324 OTU 1 seq
prokMSA_id:16783 Bacillus carboniphilus 
2.30.7.10.4.1322 OTU 5 seqs
prokMSA_id:17518 pPD7 
prokMSA_id:34699 pPD14 
prokMSA_id:35194 pPD4 
prokMSA_id:36181 pPD13 
prokMSA_id:45759 pPD12 
2.30.7.10.4.1325 OTU 1 seq
prokMSA_id:42356 Bacillus coagulans strain IDSp complete 
2.30.7.10.4.1326 OTU 1 seq
prokMSA_id:42397 clone PDSB005 
2.30.7.10.5 VR.PANTOTHENTICUS_SUBGROUP 46 seqs
2.30.7.10.5.1330 OTU 2 seqs
prokMSA_id:63140 Salibacillus sp. YIM-kkny16 
prokMSA_id:63145 Gracilibacillus sp. YIM-kkny13 
2.30.7.10.5.1329 OTU 4 seqs
prokMSA_id:15201 Lactobacillus ruminis str. RF1 ATCC 27780 . M58828
prokMSA_id:26075 rumen 3C3d-2 AB034088
prokMSA_id:30219 clone p-3424-SwA2 
prokMSA_id:90505 Bacillaceae 25-7 
2.30.7.10.5.1328 OTU 1 seq
prokMSA_id:92113 Halobacillus sp. AD-6 
2.30.7.10.5.1327 OTU 1 seq
prokMSA_id:16928 Filobacillus milensis 
2.30.7.10.5.1334 OTU 1 seq
prokMSA_id:63156 Amphibacillus sp. YIM-kkny6 
2.30.7.10.5.1333 OTU 26 seqs
prokMSA_id:14499 Bacillus sp. DSM 8720. X76444
prokMSA_id:14608 Virgibacillus pantothenticus IAM 11061 . D16275
prokMSA_id:14612 Bacillus marismortui str. 123
prokMSA_id:14613 Salibacillus salexigens str. C-20Mo CCM 4646 . Y11603
prokMSA_id:27556 Virgibacillus picturae strain LMG 19492 T
prokMSA_id:28572 Bacillus sp. MB-7 
prokMSA_id:28827 Bacillus sp. MB-3 AF326362
prokMSA_id:32490 Bacillus sp. LMG 19636 AF329473
prokMSA_id:34922 Bacillus litoralis strain IB-B8
prokMSA_id:35899 Bacillus sp. MB-1 
prokMSA_id:39395 Bacillus halodenitrificans AB021186
prokMSA_id:39597 Virgibacillus picturae strain LMG-19416
prokMSA_id:42215 Virgibacillus pantothenticus strain:M1-4 AB039331
prokMSA_id:47996 Bacillus sp. KL-152 
prokMSA_id:63154 YIM-kkny4 
prokMSA_id:63157 Salibacillus sp. YIM-kkny3 
prokMSA_id:70179 Virgibacillus picturae strain LMG 20959 AJ316297
prokMSA_id:73885 Bacillus permians complete AF166093
prokMSA_id:78544 Bacillus sp. 6:21 isolate 6:21 558BP
prokMSA_id:87957 Bacillus sp. NT16 AJ488179
prokMSA_id:91251 K2-60 
prokMSA_id:91536 Low G+C Gram-positive T152 strain:T152 AB116141
prokMSA_id:91668 Low G+C Gram-positive M33 strain:M33 AB116127
prokMSA_id:91699 K2-35 
prokMSA_id:91897 Low G+C Gram-positive M54 strain:M54 AB116132
prokMSA_id:98115 Virgibacillus sp. R-6767 
2.30.7.10.5.1332 OTU 1 seq
prokMSA_id:44837 compost 4-13 
2.30.7.10.5.1331 OTU 8 seqs
prokMSA_id:14614 Halobacillus litoralis str. SL-4 DSM 10405
prokMSA_id:21863 marine Gram-positive DH148-Z18 
prokMSA_id:44334 Halobacillus trueperi strain DSM 10404T
prokMSA_id:56418 Paraliobacillus ryukyuensis 
prokMSA_id:66422 Halobacillus karajiensis strain DSM 14948
prokMSA_id:66685 Halobacillus salinus strain HSL-3 
prokMSA_id:80237 Halobacillus locisalis 
prokMSA_id:92555 Halobacillus sp. D-8 
2.30.7.10.5.1335 OTU 2 seqs
prokMSA_id:42141 Bacillus sp. MB-9 AF326365
prokMSA_id:90097 Bacillus sp. strain K13
2.30.7.10.6 B.BADIUS_SUBGROUP 4 seqs
2.30.7.10.6.1337 OTU 1 seq
prokMSA_id:96637 Bacillus sp. R-6521 
2.30.7.10.6.1336 OTU 3 seqs
prokMSA_id:14618 Bacillus aminovorans NCIMB 8292 . X62178
prokMSA_id:14620 Bacillus badius ATCC 14574
prokMSA_id:77601 Bacillus badius 
2.30.7.10.8 B.PSEUDOMEGATERIUM_SUBGROUP 3 seqs
2.30.7.10.8.1339 OTU 1 seq
prokMSA_id:14633 clone DA018
2.30.7.10.8.1340 OTU 1 seq
prokMSA_id:37385 Bacillus sp. 1739 
2.30.7.10.8.1338 OTU 1 seq
prokMSA_id:54667 soil clone 335-1 
2.30.7.10.9 B.FIRMUS_SUBGROUP 9 seqs
2.30.7.10.9.1341 OTU 2 seqs
prokMSA_id:14648 Bacillus marinus DSM 1297
prokMSA_id:23280 Bacillus marinus 
2.30.7.10.9.1342 OTU 1 seq
prokMSA_id:14649 Bacillus sp. str. DSK25
2.30.7.10.9.1343 OTU 6 seqs
prokMSA_id:14575 Bacillus methanolicus str. C1 NCIMB 13114
prokMSA_id:14578 Bacillus methanolicus str. C1 NCIMB 13114
prokMSA_id:14656 Bacillus 171544 str. 171544
prokMSA_id:15284 Melissococcus pluton str. M40P NCDO 2440
prokMSA_id:15336 Melissococcus pluton str. M43P NCDO 2443 . X75751
prokMSA_id:37420 Melissococcus pluton strain LTH 3442
2.30.7.10.11 B.SIMPLEX_SUBGROUP 14 seqs
2.30.7.10.11.1344 OTU 14 seqs
prokMSA_id:14668 Bacillus macroides str. dhr2
prokMSA_id:14757 Bacillus subtilis str. A405. AF058767
prokMSA_id:15068 Pediococcus urinaeequi IFO 12173. D87677
prokMSA_id:26605 Nostocoida limicola I strain Ben200 AF244371
prokMSA_id:46809 Bacillus sp. LMG 20238 strain LMG 20238
prokMSA_id:50445 Bacillus sp. strain NIBH P3M26 complete 
prokMSA_id:52516 Bacillus sp. isolate P53-2
prokMSA_id:68488 Bacillus simplex strain DSM 1321T
prokMSA_id:68732 Glacial ice SB100-8-1-1 AF479370
prokMSA_id:75028 Bacillus sp. 'kanghwensis' AY172987
prokMSA_id:78577 Bacillus subtilis strain B2 
prokMSA_id:84380 Bacillus sp. B1XC 
prokMSA_id:85408 Bacillus sp. 433-D9 
prokMSA_id:97632 Extreme arid zone HX-IIF04 
2.30.7.10.12 B.MEGATERIUM_SUBGROUP 8 seqs
2.30.7.10.12.1345 OTU 7 seqs
prokMSA_id:23021 Bacillus sp. No.61 
prokMSA_id:23952 soil clone 408-1 
prokMSA_id:40755 maize root Zmrc160 
prokMSA_id:47700 Gram positive B4P-1B 
prokMSA_id:74781 Bacillus sp. 1732a 
prokMSA_id:89853 Bacillus sp. M29 AY307367
prokMSA_id:91907 K2-79 
2.30.7.10.12.1346 OTU 1 seq
prokMSA_id:14673 Bacillus megaterium IAM 13418
2.30.7.11 B.SUBTILIS_GROUP 52 seqs
2.30.7.11.1 B.COHNII_SUBGROUP 2 seqs
2.30.7.11.1.1347 OTU 2 seqs
prokMSA_id:14684 str. HTA437
prokMSA_id:77146 Bacillus licheniformis strain GA8 
2.30.7.11.4 B.PUMILUS_SUBGROUP 6 seqs
2.30.7.11.4.1350 OTU 1 seq
prokMSA_id:14706 Bacillus Biosubtyl str. Biosubtyl
2.30.7.11.4.1349 OTU 1 seq
prokMSA_id:48390 Bacillus sp. VAN13 
2.30.7.11.4.1348 OTU 1 seq
prokMSA_id:23057 Hailaer soda lake Z6 
2.30.7.11.4.1353 OTU 1 seq
prokMSA_id:78908 Bacillus sp. 6:4 isolate 6:4 651BP
2.30.7.11.4.1351 OTU 1 seq
prokMSA_id:68765 Glacial ice G500K-16 
2.30.7.11.4.1352 OTU 1 seq
prokMSA_id:55661 Bacillus pumilus isolate EI-24-8
2.30.7.11.5 B.SUBTILIS_SUBGROUP 44 seqs
2.30.7.11.5.1354 OTU 1 seq
prokMSA_id:17839 Bacillus subtilis strain LN002 
2.30.7.11.5.1357 OTU 1 seq
prokMSA_id:42085 Bacillus licheniformis 
2.30.7.11.5.1358 OTU 1 seq
prokMSA_id:76813 Bacillus subtilis strain WP1-21 
2.30.7.11.5.1359 OTU 1 seq
prokMSA_id:20946 Bacillus sp. MN-003 
2.30.7.11.5.1355 OTU 1 seq
prokMSA_id:28357 Bacillus licheniformis strain KL-185 
2.30.7.11.5.1356 OTU 1 seq
prokMSA_id:33993 Bacillus sp. strain TGS750
2.30.7.11.5.1360 OTU 1 seq
prokMSA_id:40513 Bacillus licheniformis 
2.30.7.11.5.1362 OTU 1 seq
prokMSA_id:76500 Bacillus subtilis strain GA1-5 
2.30.7.11.5.1361 OTU 1 seq
prokMSA_id:14720 Bacillus subtilis str. OG-01-fringe
2.30.7.11.5.1363 OTU 9 seqs
prokMSA_id:14761 Bacillus subtilis str. BS62
prokMSA_id:15541 Streptococcus suis str. S735 ATCC 43765
prokMSA_id:19674 clone PDSB100 
prokMSA_id:49960 clone p-2682-65A5 AF371510
prokMSA_id:58287 Streptococcus mitis AF543291
prokMSA_id:68924 Streptococcus difficile ; tRNA-Ala complete ; and 23S AF0644
prokMSA_id:71055 Streptococcus sp. oral clone BM035 AY005043
prokMSA_id:83777 Bacillus subtilis complete AY219900
prokMSA_id:86540 Bacillus sp. clone A11216S 
2.30.7.11.5.1364 OTU 1 seq
prokMSA_id:14735 Bacillus subtilis =rrnG
2.30.7.11.5.1368 OTU 1 seq
prokMSA_id:14759 Bacillus subtilis str. OG-01-center
2.30.7.11.5.1369 OTU 1 seq
prokMSA_id:74972 Bacillus subtilis strain BZ15 
2.30.7.11.5.1367 OTU 1 seq
prokMSA_id:14758 Bacillus subtilis str. PY79
2.30.7.11.5.1366 OTU 1 seq
prokMSA_id:14748 Bacillus subtilis ATCC 21331
2.30.7.11.5.1365 OTU 1 seq
prokMSA_id:14747 Bacillus subtilis ATCC 9799
2.30.7.11.5.1370 OTU 1 seq
prokMSA_id:77543 Bacillus licheniformis strain Mo1 
2.30.7.11.5.1372 OTU 1 seq
prokMSA_id:22295 Bacillus sp. strain TGS850
2.30.7.11.5.1374 OTU 1 seq
prokMSA_id:38338 Bacillus licheniformis strain SK-1 
2.30.7.11.5.1373 OTU 1 seq
prokMSA_id:28540 Pseudobacillus carolinae 
2.30.7.11.5.1371 OTU 1 seq
prokMSA_id:76920 Bacillus subtilis strain HAZ2 
2.30.7.11.5.1379 OTU 1 seq
prokMSA_id:78627 Bacillus subtilis strain HJ19 
2.30.7.11.5.1376 OTU 1 seq
prokMSA_id:27206 clone PDSB049 
2.30.7.11.5.1375 OTU 1 seq
prokMSA_id:34421 Bacillus sp. PL-30 
2.30.7.11.5.1377 OTU 1 seq
prokMSA_id:96207 Glacial ice ML-35 
2.30.7.11.5.1378 OTU 1 seq
prokMSA_id:36092 Bacillus subtilis var. chungkookjang complete 
2.30.7.11.5.1382 OTU 1 seq
prokMSA_id:26659 Bacillus sp. VAN01 
2.30.7.11.5.1381 OTU 1 seq
prokMSA_id:36405 clone PDSB048 
2.30.7.11.5.1384 OTU 1 seq
prokMSA_id:32183 Bacillus licheniformis 
2.30.7.11.5.1380 OTU 1 seq
prokMSA_id:38003 Bacillus subtilis strain KL-077 
2.30.7.11.5.1383 OTU 1 seq
prokMSA_id:17874 Bacillus subtilis strain Lactipan
2.30.7.11.5.1386 OTU 1 seq
prokMSA_id:74771 Bacillus sp. BBK-1 
2.30.7.11.5.1385 OTU 1 seq
prokMSA_id:29253 Bacillus sp. strain TGS237
2.30.7.11.5.1387 OTU 1 seq
prokMSA_id:37856 clone PDSB052 
2.30.7.11.5.1388 OTU 1 seq
prokMSA_id:76767 Bacillus subtilis strain HAZ14 
2.30.7.11.5.1389 OTU 1 seq
prokMSA_id:36125 Bacillus licheniformis strain KL-068 
2.30.7.12 STAPHYLOCOCCUS_GROUP 195 seqs
2.30.7.12.1 STAPHYLOCOCCUS_SUBGROUP 85 seqs
2.30.7.12.1.1392 OTU 14 seqs
prokMSA_id:14791 Staphylococcus capitis subsp. ureolyticus ATCC 49326
prokMSA_id:14826 Staphylococcus caprae ATCC 35538
prokMSA_id:14827 Staphylococcus epidermidis str. MAFF 911486
prokMSA_id:14863 Staphylococcus caprae DSM 20608
prokMSA_id:14873 Staphylococcus capitis subsp. capitis ATCC 27840 . L37599
prokMSA_id:14874 Staphylococcus sp. str. Koll-2
prokMSA_id:29030 AT425_Eub41 
prokMSA_id:29343 Staphylococcus sp. YSS/2001-5 complete 
prokMSA_id:46870 Staphylococcus capitis strain JPL-2 
prokMSA_id:64558 Staphylococcus sp. clone bottae4 
prokMSA_id:64559 Staphylococcus sp. clone bottae7 
prokMSA_id:64570 Staphylococcus sp. clone Tminor8 
prokMSA_id:70096 Staphylococcus epidermidis AB111112 AF397060
prokMSA_id:92651 Staphylococcus caprae HCP4 
2.30.7.12.1.1390 OTU 3 seqs
prokMSA_id:14763 Staphylococcus auricularis str. WK811M ATCC 33753 . L37598
prokMSA_id:14785 Staphylococcus auricularis str. WK811M MAFF 911484
prokMSA_id:14790 Staphylococcus #2 from Psoroptes ovis
2.30.7.12.1.1394 OTU 1 seq
prokMSA_id:14903 Spirochaeta sp. str. HIS Oman N26
2.30.7.12.1.1393 OTU 10 seqs
prokMSA_id:14789 Staphylococcus hyicus str. 1 ATCC 11249
prokMSA_id:14807 Staphylococcus schleiferi str. CD22-1
prokMSA_id:14843 Staphylococcus schleiferi subsp. schleiferi DSM 4807 . NONE
prokMSA_id:14872 Staphylococcus delphini str. Heidy ATCC 49171
prokMSA_id:14892 Staphylococcus intermedius str. H11 MAFF 911388
prokMSA_id:14897 Staphylococcus lutrae
prokMSA_id:14900 Staphylococcus schleiferi subsp. schleiferi DSM 4807
prokMSA_id:30519 Staphylococcus schleiferi Genomic 1554 nt
prokMSA_id:74274 Staphylococcus sp
prokMSA_id:77340 Staphylococcus epidermidis strain SAFR-016 AY167864
2.30.7.12.1.1391 OTU 57 seqs
prokMSA_id:14762 Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305
prokMSA_id:14765 Staphylococcus pasteuri ATCC 51129
prokMSA_id:14786 Staphylococcus equorum ATCC 43958
prokMSA_id:14808 Staphylococcus succinus str. AMG-D1 ATCC 700337
prokMSA_id:14809 Staphylococcus succinus str. AMG-D2
prokMSA_id:14814 Staphylococcus warneri ATCC 27836 . L37603
prokMSA_id:14816 str. 2e. AJ223451
prokMSA_id:14823 Staphylococcus xylosus MAFF 911482
prokMSA_id:14828 Staphylococcus arlettae str. BP47 ATCC 43957
prokMSA_id:14831 Staphylococcus kloosii str. SC210 ATCC 43959
prokMSA_id:14868 Staphylococcus saprophyticus subsp. saprophyticus MAFF 91147
prokMSA_id:14877 Staphylococcus saprophyticus subsp. saprophyticus str. NT75 
prokMSA_id:14890 Staphylococcus equorum ATCC 43958
prokMSA_id:14893 Staphylococcus cohnii subsp. urealyticum str. CK27 ATCC 4933
prokMSA_id:14901 Staphylococcus gallinarum str. VIII1 ATCC 35539
prokMSA_id:14902 Staphylococcus "aerophilus". NONE
prokMSA_id:14904 Staphylococcus cohnii subsp. cohnii MAFF 911487
prokMSA_id:16357 Staphylococcus sp. B60 AF333342
prokMSA_id:21472 Staphylococcus succinus strain SB72
prokMSA_id:31923 Staphylococcus sp. ALE-3 3'- 
prokMSA_id:40009 Psychrophilic marine PS35 complete 
prokMSA_id:52769 Staphylococcus sp. strain LMG-19417
prokMSA_id:55429 Staphylococcus pasteuri strain ZA-b2 
prokMSA_id:55657 Staphylococcus pasteuri strain ZA-b1 
prokMSA_id:60719 Staphylococcus pasteuri strain ZA-b3 
prokMSA_id:61948 Staphylococcus sp. V4.BP.06 
prokMSA_id:62644 Staphylococcus linens 
prokMSA_id:64553 Staphylococcus sp. clone bottae10 
prokMSA_id:64555 Staphylococcus sp. clone 87-7 
prokMSA_id:64556 Staphylococcus sp. clone Gexpansis4 
prokMSA_id:64557 Staphylococcus sp. clone 87-8 
prokMSA_id:64560 Staphylococcus sp. clone bottae5 
prokMSA_id:64562 Staphylococcus sp. clone Gexpansis9 
prokMSA_id:64563 Staphylococcus sp. clone Gpanamen9 
prokMSA_id:64564 Staphylococcus sp. clone 87-5 
prokMSA_id:64565 Staphylococcus sp. clone 87-10 
prokMSA_id:64568 Staphylococcus sp. clone Ggeomydis17 
prokMSA_id:64571 Staphylococcus sp. clone Gexpansis21 
prokMSA_id:64738 Staphylococcus xylosus 
prokMSA_id:72351 Bacillus sp. OS192 AJ251723
prokMSA_id:78760 Staphylococcus aureus isolate 11:5 575BP
prokMSA_id:78813 Staphylococcus succinus isolate 8:2 563BP
prokMSA_id:78977 Staphylococcus sp. 5:7 isolate 5:7 538BP
prokMSA_id:79759 Staphylococcus sp. B-3 
prokMSA_id:80662 Arctic sea ice bacterum ARK9973 AF468443
prokMSA_id:81776 Bacillus sp. clone ckl8 
prokMSA_id:81932 Staphylococcus sp. clone ckl11 
prokMSA_id:91071 G24 
prokMSA_id:93337 Staphylococcus sp. An21 isolate An21
prokMSA_id:93348 Staphylococcus sp. An33 isolate An33
prokMSA_id:93523 Staphylococcus sp. An31 isolate An31
prokMSA_id:93779 Staphylococcus sp. An35 isolate An35
prokMSA_id:94488 Firmicute clone S15B-MN18
prokMSA_id:95025 Firmicute clone S15B-MN96
prokMSA_id:95674 Staphylococcus xylosus 
prokMSA_id:97812 Staphylococcus cohnii 
prokMSA_id:98261 Staphylococcus sp. cTPY-19 complete AY239464
2.30.7.12.2 MAC.CASEOLYTICUS_SUBGROUP 28 seqs
2.30.7.12.2.1395 OTU 28 seqs
prokMSA_id:14787 Staphylococcus aureus subsp. aureus ATCC 12600
prokMSA_id:14788 Staphylococcus aureus ATCC 29740
prokMSA_id:14794 Staphylococcus aureus subsp. aureus ATCC 12600
prokMSA_id:14825 Staphylococcus aureus subsp. aureus NCDO 949
prokMSA_id:14846 Staphylococcus aureus subsp. anaerobius str. MVF-7 ATCC 3584
prokMSA_id:14862 Staphylococcus caprae DSM 20608
prokMSA_id:14880 Staphylococcus sciuri ATCC 20345
prokMSA_id:14884 Staphylococcus aureus subsp. aureus ATCC 12600
prokMSA_id:14886 Staphylococcus aureus str. FU16A2
prokMSA_id:14887 Staphylococcus aureus str. Kitami
prokMSA_id:14888 Staphylococcus aureus str. OA1
prokMSA_id:14889 Staphylococcus aureus str. M2. Y15856
prokMSA_id:14895 Staphylococcus piscifermentans NRIC 1818
prokMSA_id:34155 Staphylococcus sciuri subsp. sciuri strain DSM 20345T
prokMSA_id:44631 Staphylococcus aureus strain Mu50 complete genome
prokMSA_id:44696 Staphylococcus aureus subsp. aureus N315 complete genome
prokMSA_id:60308 Staphylococcus aureus subsp. aureus MW2 complete genome stra
prokMSA_id:60309 Staphylococcus aureus subsp. aureus N315 genomic complete ge
prokMSA_id:60312 Staphylococcus aureus subsp. aureus MW2 complete genome stra
prokMSA_id:60313 Staphylococcus aureus subsp. aureus N315 genomic complete ge
prokMSA_id:60318 Staphylococcus aureus subsp. aureus N315 genomic complete ge
prokMSA_id:60319 Staphylococcus aureus subsp. aureus MW2 complete genome stra
prokMSA_id:60766 Staphylococcus aureus subsp. aureus MW2 complete genome
prokMSA_id:61797 Micrococcus luteus 
prokMSA_id:64393 Macrococcus lamae complete 
prokMSA_id:64394 Macrococcus unicus complete 
prokMSA_id:68849 Staphylococcus aureus subsp. aureus Mu50 genomic complete se
prokMSA_id:97108 Staphylococcus lentus 
2.30.7.12.3 GEM.HAEMOLYSANS_SUBGROUP 6 seqs
2.30.7.12.3.1397 OTU 3 seqs
prokMSA_id:14918 Gemella haemolysans ATCC 10379
prokMSA_id:14923 Gemella haemolysans ATCC 10379 . M58799
prokMSA_id:76927 Gemella haemolysans clone S15A-MN66
2.30.7.12.3.1396 OTU 3 seqs
prokMSA_id:14914 Gemella morbillorum ATCC 27824
prokMSA_id:14922 Gemella sanguinis str. 2045-94 CCUG 37820
prokMSA_id:50458 Gemella sp. oral strain C24KA 
2.30.7.12.4 B.CEREUS_SUBGROUP 76 seqs
2.30.7.12.4.1398 OTU 75 seqs
prokMSA_id:14497 Bacillus arsenicoselenatis str. E1H. AF064705
prokMSA_id:14931 Bacillus cereus str. WSBC10201
prokMSA_id:14937 Bacillus thuringiensis str. WS2623
prokMSA_id:14952 Bacillus sp. str. JJ#1
prokMSA_id:14954 clone DA095
prokMSA_id:14965 unnamed organism
prokMSA_id:14969 Bacillus thuringiensis str. 82347. AF157112
prokMSA_id:17205 Bacillus sp. YSS/2001-3 
prokMSA_id:17956 Bacillus sp. strain TGS137
prokMSA_id:20717 Bacillus horikoshii 
prokMSA_id:23879 Low G+C Gram-positive MPD-63 
prokMSA_id:24569 maize root Zmrc187 
prokMSA_id:24847 Bacillus sp. OS-5 strain OS-5
prokMSA_id:28047 Bacillus sp. PL-16 AF326367
prokMSA_id:28190 Amazonian soil M38c AF083571
prokMSA_id:28561 Bacillus cereus strain S-5 
prokMSA_id:35857 Bacillus thuringiensis strain 4042 
prokMSA_id:39328 Bacillus sp. Kaza-31 
prokMSA_id:40011 Bacillus thuringiensis isolate B73 
prokMSA_id:46961 Bacillus circulans 
prokMSA_id:55839 Glacial ice SB12K-9-4 AF479367
prokMSA_id:56298 Marinibacillus marinus 
prokMSA_id:56525 Bacillus hwajinpoensis 
prokMSA_id:59480 Bacillus baekryungensis 
prokMSA_id:60367 Bacillaceae PH27B 
prokMSA_id:68733 Glacial ice SB100-8-1 AF479369
prokMSA_id:68744 Glacial ice G50-TS3 
prokMSA_id:68750 Glacial ice G200-T19 AF479351
prokMSA_id:68769 Glacial ice G500K-2 
prokMSA_id:70144 Bacillus luciferensis strain LMG 18422 AJ419629
prokMSA_id:71532 Bacillus decolorationis AJ315075
prokMSA_id:74232 Bacillus sp. PL-7 AF326371
prokMSA_id:76648 Bacillus mycoides strain EN3
prokMSA_id:78603 Bacillus cereus strain HJ9 
prokMSA_id:83858 Firmicutes W-2006 parital 
prokMSA_id:86946 Bacillus luciferensis isolate NP2 
prokMSA_id:86961 Bacillus sp. CT4 
prokMSA_id:86989 Bacillus luciferensis isolate NP1 
prokMSA_id:87005 Bacillus luciferensis isolate NP4 
prokMSA_id:87101 Bacillus luciferensis isolate NP6 
prokMSA_id:87283 Bacillus luciferensis isolate NP3 
prokMSA_id:87385 Bacillus luciferensis isolate NP60 
prokMSA_id:87462 Bacillus luciferensis isolate NP50 
prokMSA_id:87627 Bacillus luciferensis isolate NP70 
prokMSA_id:87682 Bacillus luciferensis isolate NP40 
prokMSA_id:87773 Bacillus sphaericus isolate NP71 
prokMSA_id:87776 Bacillus luciferensis isolate NP30 
prokMSA_id:87948 Bacillus luciferensis isolate NP10 
prokMSA_id:88110 Bacillus cereus strain BGSC 6A16 rrnE 
prokMSA_id:88383 Bacillus cereus strain NC 7401 AJ577280
prokMSA_id:88453 Bacillus cereus strain RIVM BC00067 AJ577282
prokMSA_id:88623 Bacillus cereus strain B 412
prokMSA_id:88674 Bacillus cereus strain OH 599
prokMSA_id:88934 Bacillus cereus strain 7pk4 AJ577279
prokMSA_id:89137 Bacillus cereus strain F 3371/93
prokMSA_id:89200 Bacillus cereus strain B 319
prokMSA_id:89224 Bacillus cereus strain B 308
prokMSA_id:89749 Bacillus cereus strain B 203
prokMSA_id:89896 Bacillus cereus strain ATCC 10987
prokMSA_id:89913 Bacillus cereus strain NS 58
prokMSA_id:90026 Bacillus weihenstephanensis strain P2-14 
prokMSA_id:90071 Bacillus cereus strain LKT 1/1 AJ577278
prokMSA_id:90341 Bacillus cereus strain LKT 1/2
prokMSA_id:90579 Bacillus anthracis strain NC08234-02 AJ578036
prokMSA_id:90668 Bacillus cereus strain F 5881/94
prokMSA_id:91142 K2-83 
prokMSA_id:91195 Bacillus mycoides strain:S31 AB116121
prokMSA_id:91266 K2-54 
prokMSA_id:91410 L14 
prokMSA_id:91444 Bacillus thuringiensis strain:S32 AB116122
prokMSA_id:91694 K2-46 
prokMSA_id:91782 K2-77 
prokMSA_id:91890 Low G+C Gram-positive M55 strain:M55 AB116133
prokMSA_id:95758 Glacial ice ML-24 AY378211
prokMSA_id:97653 Glacial ice ML-B7 AY378218
2.30.7.12.4.1399 OTU 1 seq
prokMSA_id:98396 Bacillus sp. C425 
2.30.7.13 B.SPHAERICUS_GROUP 20 seqs
2.30.7.13.1 B.SPHAERICUS_SUBGROUP 4 seqs
2.30.7.13.1.1401 OTU 1 seq
prokMSA_id:39772 Bacillus fusiformis strain DSM 2898T
2.30.7.13.1.1402 OTU 1 seq
prokMSA_id:91033 clone LWSR-35 
2.30.7.13.1.1403 OTU 1 seq
prokMSA_id:14979 Bacillus sphaericus NRS 400
2.30.7.13.1.1400 OTU 1 seq
prokMSA_id:22930 GR-371.III.83 clone GR-371.III.83
2.30.7.13.2 CRP.LATUM_SUBGROUP 3 seqs
2.30.7.13.2.1405 OTU 1 seq
prokMSA_id:66284 Bacillus sp. LCSAOTU11 
2.30.7.13.2.1404 OTU 1 seq
prokMSA_id:64192 Caryophanon latum strain DSM 14151T
2.30.7.13.2.1406 OTU 1 seq
prokMSA_id:14990 Bacillus silvestris str. HR3-23
2.30.7.13.6 B.PSYCHROPHILUS_SUBGROUP 2 seqs
2.30.7.13.6.1407 OTU 2 seqs
prokMSA_id:14623 Bacillus lentus IAM 12466 . D16272
prokMSA_id:15015 Bacillus psychrophilus str. W16A IAM 12468
2.30.7.13.7 PLC.MCMEEKINII_SUBGROUP 11 seqs
2.30.7.13.7.1408 OTU 2 seqs
prokMSA_id:33254 Planococcus sp. 'SOS Orange' 
prokMSA_id:82798 Antarctic R-8161 strain R-8161 AJ440990
2.30.7.13.7.1410 OTU 1 seq
prokMSA_id:68743 Glacial ice G50-TS4 
2.30.7.13.7.1413 OTU 1 seq
prokMSA_id:91701 K43 
2.30.7.13.7.1412 OTU 1 seq
prokMSA_id:52488 Planococcus sp. JG07 
2.30.7.13.7.1409 OTU 1 seq
prokMSA_id:45093 Planococcus psychrophilus strain CMS 53or
2.30.7.13.7.1411 OTU 3 seqs
prokMSA_id:16646 Planococcus southpolaris strain CMS 3or
prokMSA_id:29551 Planococcus southpolaris strain CMS 26or
prokMSA_id:37775 Planococcus southpolaris strain CMS 84or
2.30.7.13.7.1415 OTU 1 seq
prokMSA_id:18100 Bacillus sp. KL-024 
2.30.7.13.7.1414 OTU 1 seq
prokMSA_id:74784 Planococcus psychrotoleratus 
2.30.7.14 B.THERMOCLOACAE 2 seqs
2.30.7.14.1417 OTU 1 seq
prokMSA_id:67361 Bacillus sp. MSP06G 
2.30.7.14.1416 OTU 1 seq
prokMSA_id:15026 Bacillus thermocloacae DSM 5250
2.30.7.15 LISTERIA-BROCHOTHRIX_GROUP 10 seqs
2.30.7.15.1 LIS.MONOCYTOGENES_SUBGROUP 10 seqs
2.30.7.15.1.1418 OTU 10 seqs
prokMSA_id:15029 Listeria monocytogenes str. 5867
prokMSA_id:15032 Listeria innocua
prokMSA_id:15042 Listeria monocytogenes
prokMSA_id:15045 Listeria monocytogenes str. LL195. X98530
prokMSA_id:46413 Listeria innocua Clip11262 complete genome segment 10/12
prokMSA_id:49371 Listeria monocytogenes strain EGD complete genome segment 11
prokMSA_id:50304 Listeria monocytogenes strain EGD complete genome
prokMSA_id:53366 Listeria innocua Clip11262 complete genome
prokMSA_id:53770 Listeria monocytogenes strain EGD complete genome segment 9/
prokMSA_id:54496 Listeria innocua Clip11262 complete genome segment 8/12
2.30.7.16 ABIOTROPHIA_GROUP 11 seqs
2.30.7.16.1419 OTU 1 seq
prokMSA_id:15062 Facklamia CCUG30090 CCUG 30090
2.30.7.16.1420 OTU 9 seqs
prokMSA_id:15071 Aerococcus urinae str. G1-84. U64457
prokMSA_id:15072 Aerococcus urinae str. 1656-92
prokMSA_id:95500 Aerococcus urinae isolate CCUG 32514 AY422716
prokMSA_id:96251 Aerococcus urinae isolate CDC 151585 AY422712
prokMSA_id:96543 Aerococcus urinae isolate NL 95028 AY422713
prokMSA_id:96593 Aerococcus urinae isolate DK E2T AY422717
prokMSA_id:97674 Aerococcus urinae isolate NL 95012 AY422714
prokMSA_id:98017 Aerococcus urinae isolate NL 95031 AY422711
prokMSA_id:98780 Aerococcus urinae isolate CDC 335295 AY422715
2.30.7.16.1422 OTU 1 seq
prokMSA_id:15076 Aerococcus CCUG28826 CCUG 28826
2.30.7.17 LACTOBACILLI 185 seqs
2.30.7.17.1 WEI.VIRIDESCENS_SUBGROUP 10 seqs
2.30.7.17.1.1423 OTU 1 seq
prokMSA_id:64384 Weissella kimchii strain RO5 complete 
2.30.7.17.1.1426 OTU 1 seq
prokMSA_id:18129 pPD5 
2.30.7.17.1.1427 OTU 6 seqs
prokMSA_id:15078 Weissella viridescens str. S38A NCDO 1655 . X52568
prokMSA_id:15080 Weissella minor NCDO 1973. X52569
prokMSA_id:15087 Weissella viridescens str. S38A ATCC 12706 . M23040
prokMSA_id:15094 Weissella minor ATCC 35412 . M23039
prokMSA_id:30631 Weissella minor strain:NRIC 1625
prokMSA_id:33970 Weissella viridescens strain NRIC 1536
2.30.7.17.1.1424 OTU 1 seq
prokMSA_id:29790 clone PDSB096 
2.30.7.17.1.1425 OTU 1 seq
prokMSA_id:24685 clone PDSB071 
2.30.7.17.2 LC.MESENTEROIDES_SUBGROUP 7 seqs
2.30.7.17.2.1428 OTU 3 seqs
prokMSA_id:16498 Leuconostoc fallax 
prokMSA_id:52511 Leuconostoc fallax strain NRIC 0210 AB023239
prokMSA_id:67686 Leuconostoc fallax 
2.30.7.17.2.1429 OTU 1 seq
prokMSA_id:999993 SYN Occ.oeni3
2.30.7.17.2.1430 OTU 3 seqs
prokMSA_id:15096 Oenococcus oeni ATCC 23279 . M35820
prokMSA_id:20679 Oenococcus oeni strain:95 St.CS-5-1
prokMSA_id:44642 Oenococcus oeni strain:95 St.Mer-8-1
2.30.7.17.3 L.DELBRUECKII_SUBGROUP 34 seqs
2.30.7.17.3.1432 OTU 1 seq
prokMSA_id:15129 Lactobacillus crispatus NCTC 4
2.30.7.17.3.1431 OTU 12 seqs
prokMSA_id:15119 Lactobacillus delbrueckii subsp. bulgaricus str. Lb.14 JCM 1
prokMSA_id:15120 Lactobacillus delbrueckii subsp. delbrueckii str. Calvert AT
prokMSA_id:15124 Lactobacillus delbrueckii subsp. lactis ATCC 12315 . M58823
prokMSA_id:19801 clone p-2370-55G5 
prokMSA_id:24230 Lactobacillus delbrueckii subsp. delbrueckii 
prokMSA_id:55673 clone 54CR complete 
prokMSA_id:67815 clone 45CR 
prokMSA_id:67818 clone 51CR complete 
prokMSA_id:67822 clone 37CR complete 
prokMSA_id:70954 Lactobacillus delbrueckii subsp. bulgaricus AY050171
prokMSA_id:73747 Lactobacillus delbrueckii subsp. lactis AY050173
prokMSA_id:95745 Lactobacillus delbrueckii subsp. indicus strain NCC725 
2.30.7.17.3.1433 OTU 5 seqs
prokMSA_id:16314 Lactobacillus gasseri strain BLB1b 
prokMSA_id:22892 Lactobacillus gasseri strain KC36a 
prokMSA_id:26608 Lactobacillus sp. KC45b 
prokMSA_id:35597 Lactobacillus gasseri strain BLB3 
prokMSA_id:39384 Lactobacillus gasseri strain TL33a 
2.30.7.17.3.1434 OTU 16 seqs
prokMSA_id:15132 Lactobacillus acidophilus subsp. johnsonii str. BMF 6Lb6 LAB
prokMSA_id:15135 Lactobacillus johnsonii ATCC 33200
prokMSA_id:15136 Lactobacillus gasseri ATCC 33323 . M58820
prokMSA_id:16504 Lactobacillus gasseri strain KC5a 
prokMSA_id:17132 clone p-136-a2 
prokMSA_id:18662 clone p-2315-962-2 
prokMSA_id:37371 ckncm251-m8a2 
prokMSA_id:42911 clone S24-1
prokMSA_id:48509 Lactobacillus gasseri strain KC29 
prokMSA_id:50521 Lactobacillus gasseri strain KC26 
prokMSA_id:66613 Lactobacillus sp. IDSAc 
prokMSA_id:74006 clone F15 AJ400238
prokMSA_id:74642 Lactobacillus gasseri strain ATCC 33323 complete 
prokMSA_id:92368 Lactobacillus gasseri strain BJ H28-3 AY339167
prokMSA_id:92771 Lactobacillus sp. oral clone HT002 
prokMSA_id:93008 Lactobacillus gasseri strain BJ21-1 AY341539
2.30.7.17.4 L.REUTERI_SUBGROUP 23 seqs
2.30.7.17.4.1437 OTU 13 seqs
prokMSA_id:15139 Lactobacillus fermentum ATCC 14931 . M58819
prokMSA_id:15140 Lactobacillus fermentum str. KRM
prokMSA_id:21805 Lactobacillus fermentum strain F53 
prokMSA_id:41377 Lactobacillus fermentum strain KC5b 
prokMSA_id:44080 Lactobacillus fermentum strain PL9006 complete 
prokMSA_id:51843 clone PDSB106 
prokMSA_id:52471 Lactobacillus fermentum complete 
prokMSA_id:67806 Lactobacillus sp. CR-6AS clone crev-7 
prokMSA_id:67816 clone 60CR complete 
prokMSA_id:71186 Lactobacillus fermentum strain KLB12 complete AF522394
prokMSA_id:88448 Lactobacillus cellobiosus specimen voucher CECT 562
prokMSA_id:88564 Lactobacillus suebicus strain CECT 5917T
prokMSA_id:95034 Lactobacillus fermentum MD-9 
2.30.7.17.4.1436 OTU 4 seqs
prokMSA_id:16684 Lactobacillus vaginalis strain KC19 
prokMSA_id:21772 Lactobacillus vaginalis strain ATCC49540 
prokMSA_id:35658 Lactobacillus sp. TMW 1.666 strain TMW 1.666
prokMSA_id:40490 Lactobacillus sp. oral clone CX036 
2.30.7.17.4.1435 OTU 5 seqs
prokMSA_id:15142 Lactobacillus pontis str. LTH 2587. X76329
prokMSA_id:15150 Lactobacillus oris DSM 4864 . X94229
prokMSA_id:49835 clone p-3083-SwA-3 
prokMSA_id:76876 Lactobacillus pontis strain LMG 14187 T AJ422032
prokMSA_id:77216 Lactobacillus pontis strain LMG 14188 AJ422033
2.30.7.17.4.1438 OTU 1 seq
prokMSA_id:15143 Lactobacillus reuteri str. F275 DSM 20016
2.30.7.17.5 PED.PENTOSACEUS_SUBGROUP 14 seqs
2.30.7.17.5.1439 OTU 14 seqs
prokMSA_id:15152 Pediococcus pentosaceus str. LS 5
prokMSA_id:15155 Pediococcus acidilactici str. B213c DSM 20284 . M58833
prokMSA_id:15156 Pediococcus acidilactici str. LA 3
prokMSA_id:15157 Pediococcus acidilactici str. LA 35
prokMSA_id:15203 Lactobacillus agilis DSM 20509 . M58803
prokMSA_id:23628 equine intestinal sp. MW20 clone MW20
prokMSA_id:39949 Lactobacillus pantheri complete 
prokMSA_id:40870 Pediococcus acidilactici strain B1104 AJ305322
prokMSA_id:44357 Pediococcus acidilactici strain DSM 20284 AJ305320
prokMSA_id:53881 clone PDSB044 
prokMSA_id:56475 Pediococcus acidilactici strain RO17 complete 
prokMSA_id:56512 Lactobacillus letivazi 23S and internal transcribed spacer 1
prokMSA_id:89733 Lactobacillus sp. CECT 5922 strain CECT 5922 AJ576007
prokMSA_id:89972 Lactobacillus sp. CECT 5923 strain CECT 5923
2.30.7.17.6 L.PLANTARUM_SUBGROUP 44 seqs
2.30.7.17.6.1442 OTU 1 seq
prokMSA_id:18684 Lactobacillus paraalimentarius 
2.30.7.17.6.1440 OTU 11 seqs
prokMSA_id:15169 Lactobacillus brevis NCDO 1749 . X61134
prokMSA_id:15170 Lactobacillus brevis ATCC 14869 . M58810
prokMSA_id:15171 Lactobacillus brevis NRIC 1684. AB024299
prokMSA_id:15172 Lactobacillus brevis str. K9
prokMSA_id:15173 Lactobacillus brevis str. Lactobacillus brevis L63
prokMSA_id:16554 Lactobacillus brevis strain:B4101
prokMSA_id:17965 Lactobacillus brevis strain:B5501
prokMSA_id:40052 Lactobacillus brevis strain:B5401
prokMSA_id:48588 Lactobacillus brevis strain:B5201
prokMSA_id:64387 Lactobacillus brevis strain RO66 complete 
prokMSA_id:64389 Lactobacillus brevis strain RO97 complete 
2.30.7.17.6.1441 OTU 21 seqs
prokMSA_id:15159 Lactobacillus pentosus JCM 1588
prokMSA_id:15160 Lactobacillus sp. ATCC 10776. D79213
prokMSA_id:15161 Lactobacillus plantarum JCM 1149 . D79210
prokMSA_id:15163 Lactobacillus plantarum str. 17-5 ATCC 8014. M58827
prokMSA_id:15166 Lactobacillus plantarum str. Lp 39 NCDO 1752 . X52653
prokMSA_id:26820 Lactobacillus plantarum 
prokMSA_id:31888 Lactobacillus paraplantarum strain DSM 10667T
prokMSA_id:46388 Lactobacillus B5407 
prokMSA_id:64381 Lactobacillus plantarum strain RO7 complete 
prokMSA_id:64526 Lactobacillus sp. MR-2 AF516755
prokMSA_id:64527 Lactobacillus sp. MR-1 AF516754
prokMSA_id:73661 Lactobacillus plantarum strain UK782 AJ271852
prokMSA_id:73879 Lactobacillus plantarum strain HSW36 AJ272031
prokMSA_id:79835 Lactobacillus plantarum strain WCFS1 complete genome; segmen
prokMSA_id:80353 Lactobacillus plantarum WCFS1 complete genome
prokMSA_id:80366 Lactobacillus plantarum strain WCFS1 complete genome; segmen
prokMSA_id:80507 Lactobacillus plantarum strain WCFS1 complete genome; segmen
prokMSA_id:80613 Lactobacillus plantarum strain WCFS1 complete genome; segmen
prokMSA_id:80844 Lactobacillus plantarum strain WCFS1 complete genome; segmen
prokMSA_id:84089 Lactobacillus plantarum complete 
prokMSA_id:88391 Lactobacillus plantarum 
2.30.7.17.6.1444 OTU 2 seqs
prokMSA_id:26722 clone p-2960-9F2 
prokMSA_id:48381 clone p-3000-9F2 
2.30.7.17.6.1443 OTU 9 seqs
prokMSA_id:15167 Lactobacillus alimentarius ATCC 29643 . M58804
prokMSA_id:15168 Lactobacillus farciminis ATCC 29644 . M58817
prokMSA_id:24802 Lactobacillus kimchii 
prokMSA_id:58041 Lactobacillus sp. TMW 1.80 strain TMW 1.80
prokMSA_id:70330 Lactobacillus paralimentarius strain DSM 13238 AJ417500
prokMSA_id:70957 Lactobacillus farciminis strain DSM 20185 AJ417499
prokMSA_id:76191 Lactobacillus paralimentarius strain ACA-DC 3413
prokMSA_id:76249 Lactobacillus paralimentarius strain ACA-DC 3415
prokMSA_id:76371 Lactobacillus paralimentarius strain ACA-DC 3363
2.30.7.17.7 L.SANFRANCISCENSIS_SUBGROUP 12 seqs
2.30.7.17.7.1446 OTU 9 seqs
prokMSA_id:15176 Lactobacillus sanfranciscensis DSM 20663. X76331
prokMSA_id:15181 Lactobacillus sanfranciscensis JCM 5668 . X61132
prokMSA_id:15187 Lactobacillus sanfranciscensis str. Kline L-2 ATCC 27651 . M
prokMSA_id:15189 Lactobacillus sanfranciscensis str. Kline L-2 ATCC 27651 . X
prokMSA_id:15191 Lactobacillus lindneri str. KPA DSM 20690 . X95421
prokMSA_id:15192 Lactobacillus lindneri str. L2. X95422
prokMSA_id:15193 Lactobacillus lindneri str. LTH 2505. X95423
prokMSA_id:26176 Lactobacillus sp. clone KL-11-1-6 
prokMSA_id:74576 Lactobacillus sp. clone KL-111-2-6 
2.30.7.17.7.1445 OTU 3 seqs
prokMSA_id:15180 Lactobacillus hilgardii ATCC 8290 . M58821
prokMSA_id:15182 Lactobacillus sp. str. L 343 ATCC 13133. M59295
prokMSA_id:85541 Lactobacillus hilgardii IOEB0204 
2.30.7.17.8 L.MALI_SUBGROUP 29 seqs
2.30.7.17.8.1447 OTU 9 seqs
prokMSA_id:15198 Lactobacillus animalis ATCC 35046 . M58807
prokMSA_id:15199 Lactobacillus murinus ATCC 35020. M58826
prokMSA_id:15200 Lactobacillus murinus str. ASF 361
prokMSA_id:15202 Lactobacillus C33LV5 str. C33LV5
prokMSA_id:22999 clone S25-9
prokMSA_id:84709 Lactobacillus saerimmeri AY255802
prokMSA_id:90383 Lactobacillus murinus 
prokMSA_id:96727 Lactobacillus sp. T059 
prokMSA_id:97991 clone rc1-18 complete AY239418
2.30.7.17.8.1449 OTU 3 seqs
prokMSA_id:15207 Lactobacillus aviarius subsp. aviarius ATCC 43234 . M58808
prokMSA_id:15208 Lactobacillus aviarius 
prokMSA_id:15209 Lactobacillus aviarius 
2.30.7.17.8.1448 OTU 17 seqs
prokMSA_id:15204 Lactobacillus salivarius subsp. salicinius str. H0268 ATCC 1
prokMSA_id:15205 Lactobacillus salivarius subsp. salivarius str. H066 ATCC 11
prokMSA_id:22623 Chicken intestinal MRS 4.5 
prokMSA_id:33452 Lactobacillus salivarius subsp. salivarius complete 
prokMSA_id:35499 Lactobacillus salivarius 
prokMSA_id:48374 clone p-4323-4Wa3 
prokMSA_id:62010 Lactobacillus salivarius subsp. salicinius strain JCM 1230 
prokMSA_id:62011 Lactobacillus salivarius subsp. salicinius strain JCM 1046 
prokMSA_id:62012 Lactobacillus salivarius subsp. salicinius strain JCM 1047 
prokMSA_id:62013 Lactobacillus salivarius subsp. salicinius strain JCM 1044 
prokMSA_id:62014 Lactobacillus salivarius subsp. salicinius strain JCM 1042 
prokMSA_id:62015 Lactobacillus salivarius subsp. salicinius strain JCM 1045 
prokMSA_id:64741 Lactobacillus salivarius subsp. salivarius complete 
prokMSA_id:74310 Lactobacillus sp. AK21 AY098491
prokMSA_id:95759 Lactobacillus salivarius strain RA2115 
prokMSA_id:96905 Lactobacillus salivarius strain RA2116 
prokMSA_id:97946 Lactobacillus salivarius strain RA2105 
2.30.7.17.9 L.CASEI_SUBGROUP 12 seqs
2.30.7.17.9.1450 OTU 1 seq
prokMSA_id:33166 Lactobacillus casei subsp. casei strain UK 318
2.30.7.17.9.1451 OTU 6 seqs
prokMSA_id:15214 Lactobacillus rhamnosus JCM 1136 . D16552
prokMSA_id:15223 Lactobacillus paracasei subsp. paracasei JCM 1133. D16548
prokMSA_id:20863 Lactobacillus paracasei subsp. paracasei strain F31 
prokMSA_id:48136 Lactobacillus rhamnosus strain F11 
prokMSA_id:50029 Lactobacillus paracasei subsp. paracasei strain KLB58 
prokMSA_id:67359 Lactobacillus casei strain KH-1 
2.30.7.17.9.1452 OTU 5 seqs
prokMSA_id:15211 Lactobacillus manihotivorans str. OND 32 LMG 18010
prokMSA_id:15212 Lactobacillus manihotivorans str. YAM I LMG 18011
prokMSA_id:37287 clone PDSB001 
prokMSA_id:43643 clone PDSB021 
prokMSA_id:47860 clone PDSB038 
2.30.7.18 CARNOBACTERIUM_GROUP 12 seqs
2.30.7.18.1 AIC.OTITIS_SUBGROUP 4 seqs
2.30.7.18.1.1453 OTU 4 seqs
prokMSA_id:15237 Alloiococcus otitis NCFB 2890 . X59765
prokMSA_id:15238 unnamed organism
prokMSA_id:15239 unnamed organism
prokMSA_id:15240 unnamed organism
2.30.7.18.2 CRN.DIVERGENS_SUBGROUP 8 seqs
2.30.7.18.2.1457 OTU 1 seq
prokMSA_id:29998 Nostocoida limicola I 
2.30.7.18.2.1456 OTU 1 seq
prokMSA_id:66187 clone IB-11
2.30.7.18.2.1454 OTU 4 seqs
prokMSA_id:15260 Carnobacterium LV62:W1 str. LV62:W1
prokMSA_id:15261 Carnobacterium Y6 str. Y6
prokMSA_id:19355 Carnobacterium viridans 
prokMSA_id:44929 Carnobacterium sp. FTR-1 
2.30.7.18.2.1455 OTU 2 seqs
prokMSA_id:15244 Carnobacterium LV66 str. LV66. AF076638
prokMSA_id:15259 Desemzia incerta DSM 20581
2.30.7.20 ENTEROCOCCUS_GROUP 103 seqs
2.30.7.20.1458 OTU 2 seqs
prokMSA_id:15296 Enterococcus columbae ATCC 51263
prokMSA_id:17976 Enterococcus columbae strain LMG 11740
2.30.7.20.1460 OTU 2 seqs
prokMSA_id:15279 Enterococcus cecorum ATCC 43198
prokMSA_id:35549 Enterococcus sp. P8403 strain P8403
2.30.7.20.1459 OTU 69 seqs
prokMSA_id:14643 clone Riz6D. AJ244307
prokMSA_id:14681 clone DA026
prokMSA_id:15433 Streptococcus milleri str. 4221
prokMSA_id:15453 Streptococcus equi subsp. equi NCTC 9682
prokMSA_id:15462 Streptococcus anginosus ATCC 33397 . AF104678
prokMSA_id:15463 Streptococcus anginosus str. 1012. AF104679
prokMSA_id:15464 Streptococcus anginosus str. 367. AF145239
prokMSA_id:15465 Streptococcus anginosus str. 1204. AF145240
prokMSA_id:15467 Streptococcus anginosus str. 21. AF145242
prokMSA_id:15468 Streptococcus anginosus str. 414. AF145243
prokMSA_id:15469 Streptococcus anginosus str. 1093. AF145244
prokMSA_id:15471 Streptococcus anginosus str. 920. AF145246
prokMSA_id:15497 Streptococcus anginosus str. SK54 ATCC 27335
prokMSA_id:15499 Streptococcus constellatus ATCC 27823 . NONE
prokMSA_id:15501 Streptococcus intermedius str. 488. AF104673
prokMSA_id:15502 Streptococcus intermedius str. 535. AF104674
prokMSA_id:15503 Streptococcus intermedius str. 539. AF104675
prokMSA_id:15504 Streptococcus constellatus ATCC 27823 . AF104676
prokMSA_id:15505 Streptococcus constellatus str. 206
prokMSA_id:15507 Streptococcus sanguinis ATCC 10556
prokMSA_id:15531 Streptococcus suis str. 89-3576
prokMSA_id:15540 Streptococcus suis str. EA1832.92
prokMSA_id:15562 Streptococcus pneumoniae
prokMSA_id:15571 clone v5
prokMSA_id:15572 Streptococcus pneumoniae ATCC 33400 . AF003930
prokMSA_id:15575 Streptococcus pneumoniae ATCC 6303
prokMSA_id:16501 Streptococcus pneumoniae A34 
prokMSA_id:18951 Streptococcus pneumoniae R6 section 168 of 184 of the comple
prokMSA_id:24384 clone p-4-a5 
prokMSA_id:26707 Streptococcus sp. 2061A 
prokMSA_id:27308 Streptococcus sp. oral clone AA007 
prokMSA_id:28186 Enterococcus haemoperoxidus 
prokMSA_id:32537 Streptococcus sp. oral clone FP064 
prokMSA_id:34984 Streptococcus gallolyticus clone *Cow12
prokMSA_id:36006 Streptococcus pneumoniae B5 
prokMSA_id:37591 Streptococcus gallolyticus clone Cow37
prokMSA_id:38886 Streptococcus sp. 3192A 
prokMSA_id:39626 Streptococcus sp. 3170A 
prokMSA_id:40273 clone t024 AF422598
prokMSA_id:41712 clone p-2-a5 
prokMSA_id:41742 Streptococcus mitis strain 127R
prokMSA_id:41889 Streptococcus sp. 3097C 
prokMSA_id:43735 microorganism clone Col112
prokMSA_id:45312 Streptococcus pneumoniae R6 section 2 of 184 of the complete
prokMSA_id:46365 Streptococcus mitis strain 209
prokMSA_id:47428 Streptococcus pneumoniae R6 section 162 of 184 of the comple
prokMSA_id:48329 Streptococcus pneumoniae R6 section 153 of 184 of the comple
prokMSA_id:48998 Streptococcus pneumoniae A33 
prokMSA_id:50372 clone p-29-a5 
prokMSA_id:50448 Streptococcus intermedius strain ATCC27335 
prokMSA_id:50550 Streptococcus sp. oral clone AY020 
prokMSA_id:51588 microorganism clone *Cow16
prokMSA_id:52668 Streptococcus pneumoniae R6 complete genome
prokMSA_id:53325 Streptococcus pneumoniae complete genome
prokMSA_id:59559 Streptococcus sp. oral clone AG008 
prokMSA_id:70487 Streptococcus sp. 4093B AF316592
prokMSA_id:72273 Streptococcus sp. 2056B AF316593
prokMSA_id:73216 human infant N13B4 AF253356
prokMSA_id:73251 Streptococcus sp. oral strain H6 AY005041
prokMSA_id:84858 Streptococcus sp. oral clone P2PA_41 P2 
prokMSA_id:87435 Streptococcus constellatus strain 15 
prokMSA_id:87453 Streptococcus constellatus strain 919 
prokMSA_id:87466 Streptococcus constellatus strain 1192 
prokMSA_id:87550 Streptococcus constellatus strain 857 
prokMSA_id:87569 Streptococcus constellatus strain 1259 
prokMSA_id:87920 Streptococcus constellatus strain 1 
prokMSA_id:88586 Streptococcus alactolyticus strain ONK4 AY324631
prokMSA_id:90372 Streptococcus sp
prokMSA_id:92535 Streptococcus sp. oral clone GM006 
2.30.7.20.1461 OTU 1 seq
prokMSA_id:15272 Enterococcus faecalis str. JCM 5803
2.30.7.20.1462 OTU 5 seqs
prokMSA_id:15273 Enterococcus faecalis str. JH2-2
prokMSA_id:19924 Enterococcus gallinarum strain CECT970T AJ420805
prokMSA_id:26643 Enterococcus faecalis 
prokMSA_id:72554 Enterococcus faecalis strain UK1399 AJ271847
prokMSA_id:74813 Enterococcus mundtii strain LMG 10748
2.30.7.20.1464 OTU 1 seq
prokMSA_id:50297 Enterococcus faecalis strain P7812
2.30.7.20.1463 OTU 1 seq
prokMSA_id:75810 Swine manure RT-19B 
2.30.7.20.1465 OTU 1 seq
prokMSA_id:75898 Swine manure RT-2A 
2.30.7.20.1466 OTU 1 seq
prokMSA_id:20595 Tetragenococcus halophilus strain DSM 20339
2.30.7.20.1467 OTU 2 seqs
prokMSA_id:47779 Enterococcus durans strain CECT411T
prokMSA_id:67817 clone 41CR AF349921
2.30.7.20.1468 OTU 1 seq
prokMSA_id:40545 Enterococcus pseudoavium strain LMG 11426
2.30.7.20.1470 OTU 1 seq
prokMSA_id:95956 Enterococcus faecalis 
2.30.7.20.1469 OTU 1 seq
prokMSA_id:50018 Enterococcus faecium strain CECT410T
2.30.7.20.1472 OTU 1 seq
prokMSA_id:43998 Enterococcus saccharolyticus strain LMG 11427
2.30.7.20.1471 OTU 2 seqs
prokMSA_id:97271 Enterococcus sp. cB-53 complete AY239468
prokMSA_id:97584 Enterococcus sp. NAB15 
2.30.7.20.1474 OTU 1 seq
prokMSA_id:60256 Enterococcus ratti 
2.30.7.20.1477 OTU 5 seqs
prokMSA_id:15300 str. BAW1
prokMSA_id:15301 Enterococcus saccharolyticus
prokMSA_id:15329 Enterococcus saccharolyticus NCDO 2594 . Y18357
prokMSA_id:46861 Enterococcus faecalis strain CECT481T
prokMSA_id:89497 soil clone HN1-35 
2.30.7.20.1473 OTU 1 seq
prokMSA_id:67813 Enterococcus sp. CR-300S clone crev-1 
2.30.7.20.1476 OTU 1 seq
prokMSA_id:53470 Enterococcus sulfureus strain LMG 13084
2.30.7.20.1475 OTU 1 seq
prokMSA_id:37079 Enterococcus casseliflavus CCM 4869 
2.30.7.20.1480 OTU 1 seq
prokMSA_id:98661 Enterococcus hermanniensis strain LMG 13617 
2.30.7.20.1479 OTU 1 seq
prokMSA_id:51145 Enterococcus sp. CLE-2 
2.30.7.20.1478 OTU 1 seq
prokMSA_id:62639 clone E
2.30.7.21 STREPTOCOCCI 56 seqs
2.30.7.21.1 LCC.LACTIS_SUBGROUP 28 seqs
2.30.7.21.1.1481 OTU 9 seqs
prokMSA_id:15342 Lactococcus lactis subsp. lactis ATCC 19435 . M58837
prokMSA_id:58588 Lactococcus lactis subsp. lactis 
prokMSA_id:64379 Lactococcus lactis subsp. lactis strain RO6 complete 
prokMSA_id:92114 Lactococcus lactis subsp. lactis strain:K335 AB118033
prokMSA_id:92655 Lactococcus lactis subsp. lactis strain:K338
prokMSA_id:92900 Lactococcus lactis strain:JCM7638
prokMSA_id:92972 Lactococcus lactis subsp. lactis strain:K336
prokMSA_id:93048 Lactococcus lactis Akira2 ; -23S intergenic spacer complete 
prokMSA_id:93099 Lactococcus lactis subsp. lactis strain:K337
2.30.7.21.1.1482 OTU 17 seqs
prokMSA_id:15347 Lactococcus garvieae str. YT-3 ATCC 49156 . L32813
prokMSA_id:15348 Lactococcus garvieae JCM 8735
prokMSA_id:19276 Lactococcus garvieae strain FLG4 
prokMSA_id:28491 Lactococcus garvieae strain FLG2 
prokMSA_id:31382 Lactococcus garvieae strain FLG12 
prokMSA_id:36458 Enterococcus seriolicida 
prokMSA_id:37760 clone PDSB067 
prokMSA_id:42931 Lactococcus garvieae strain E 1
prokMSA_id:44780 Enterococcus sp. U1-1 
prokMSA_id:45250 Lactococcus garvieae complete 
prokMSA_id:48070 Lactococcus garvieae strain FLG5 
prokMSA_id:49334 clone PDSB066 
prokMSA_id:57570 clone AP2-15 
prokMSA_id:57572 clone AP2-12 
prokMSA_id:57573 clone AP2-8 
prokMSA_id:57574 clone AP2-4 
prokMSA_id:57575 clone AP2-2 
2.30.7.21.1.1484 OTU 1 seq
prokMSA_id:54794 Streptococcus sp. clone KL-36-1-14 
2.30.7.21.1.1483 OTU 1 seq
prokMSA_id:66049 Lactococcus lactis strain MRS1
2.30.7.21.3 STC.PYOGENES_SUBGROUP 7 seqs
2.30.7.21.3.1486 OTU 3 seqs
prokMSA_id:15356 Streptococcus uberis. U41048
prokMSA_id:15387 clone v6
prokMSA_id:25514 Streptococcus dysgalactiae subsp. equisimilis strain AC-2074
2.30.7.21.3.1485 OTU 1 seq
prokMSA_id:84371 Streptococcus pyogenes 
2.30.7.21.3.1488 OTU 1 seq
prokMSA_id:47988 clone p-4306-4Wa3 
2.30.7.21.3.1487 OTU 2 seqs
prokMSA_id:35033 Streptococcus ferus strain LMG16520T 
prokMSA_id:37236 Streptococcus ferus 
2.30.7.21.6 STC.SALIVARIUS_SUBGROUP 2 seqs
2.30.7.21.6.1489 OTU 2 seqs
prokMSA_id:25148 Streptococcus luteciae strain NEM 782
prokMSA_id:36638 Streptococcus sp. LRC 0476 
2.30.7.21.8 STC.SUIS_SUBGROUP 1 seq
2.30.7.21.8.1490 OTU 1 seq
prokMSA_id:15509 clone T46
2.30.7.21.9 STC.PNEUMONIAE_SUBGROUP 18 seqs
2.30.7.21.9.1491 OTU 1 seq
prokMSA_id:33551 human oral A26 
2.30.7.21.9.1492 OTU 2 seqs
prokMSA_id:15570 clone v3
prokMSA_id:44126 Enterococcus casseliflavus strain LMG 10745
2.30.7.21.9.1493 OTU 12 seqs
prokMSA_id:15456 Streptococcus alactolyticus str. 76-84-1 ATCC 43492
prokMSA_id:15532 Streptococcus suis str. 89-5259
prokMSA_id:15545 Streptococcus suis str. 86-5192
prokMSA_id:22346 Streptococcus canis strain NCTC12191
prokMSA_id:24233 Streptococcus dysgalactiae 
prokMSA_id:24456 Streptococcus canis Streptococcus canis strain CG40
prokMSA_id:33248 clone p-4662-2Wa2 
prokMSA_id:39559 mpn-isolate group 11 
prokMSA_id:66197 Streptococcus dysgalactiae subsp. equisimilis strain ATCC 35
prokMSA_id:81224 Streptococcus dysgalactiae subsp. equisimilis strain:A-ka
prokMSA_id:82202 Streptococcus dysgalactiae subsp. equisimilis strain:BL2719
prokMSA_id:82688 Streptococcus sp. oral clone P4PA_30 P4 
2.30.7.21.9.1494 OTU 1 seq
prokMSA_id:51275 Streptococcus sp. oral clone BE024 
2.30.7.21.9.1496 OTU 1 seq
prokMSA_id:25259 Streptococcus sp. oral clone FO042 
2.30.7.21.9.1495 OTU 1 seq
prokMSA_id:87336 Streptococcus genomosp. C6 
2.30.8 MYCOPLASMA_AND_RELATIVES 247 seqs
2.30.8.2 ACHOLEPLASMA-ANAEROPLASMA_GROUP 107 seqs
2.30.8.2.1 MYCOPLASMA-LIKE-ORGANISM_SUBGROUP_I 63 seqs
2.30.8.2.1.1498 OTU 1 seq
prokMSA_id:63010 Sorghum grassy shoot phytoplasma 
2.30.8.2.1.1500 OTU 3 seqs
prokMSA_id:15603 str. EY1
prokMSA_id:87229 Spartium witches'-broom phytoplasma strain SpaWB251 
prokMSA_id:87317 Alder yellows phytoplasma strain ALY1068 
2.30.8.2.1.1499 OTU 6 seqs
prokMSA_id:17222 Black locust witches'-broom phytoplasma operon 
prokMSA_id:53311 Chayote witches' broom phytoplasma ChWBIII strain ChWBIIIMor
prokMSA_id:54971 Chayote witches' broom phytoplasma ChWBIII strain ChWBIIICh1
prokMSA_id:58988 Garlic Decline Phytoplasma -23S intergenic spacer region and
prokMSA_id:66027 Blueberry proliferation phytoplasma ; tRNA-Ile complete ; an
prokMSA_id:67362 Chinaberry yellows phytoplasma ; tRNA-Ile complete ; and 23S
2.30.8.2.1.1501 OTU 3 seqs
prokMSA_id:33747 Poinsettia branch-inducing phytoplasma operon 
prokMSA_id:69885 Sugarcane yellows phytoplasma I strain ScYP I-Barb ; tRNA-Il
prokMSA_id:73130 Sugarcane yellows phytoplasma I strain ScYP I-Afr ; tRNA-Ile
2.30.8.2.1.1497 OTU 1 seq
prokMSA_id:15640 Mycoplasma sp. str. BVK
2.30.8.2.1.1506 OTU 1 seq
prokMSA_id:15621 Phytoplasma Gph subsp. Gerbera phyllody phytoplasma str. GPh
2.30.8.2.1.1502 OTU 2 seqs
prokMSA_id:15580 unnamed organism
prokMSA_id:39304 Sugarcane phytoplasma E SUNH 
2.30.8.2.1.1505 OTU 1 seq
prokMSA_id:96747 Alfalfa witches'-broom phytoplasma -23S intergenic spacer tR
2.30.8.2.1.1503 OTU 2 seqs
prokMSA_id:87547 Flavescence doree phytoplasma strain FD-D 
prokMSA_id:91186 Nectarine yellows phytoplasma strain NecY-In1 
2.30.8.2.1.1504 OTU 1 seq
prokMSA_id:73858 Cocky apple witches' broom phytoplasma tRNA-Ile and 
2.30.8.2.1.1510 OTU 1 seq
prokMSA_id:54260 Hibiscus witches'-broom phytoplasma strain HibWB26 -23S inte
2.30.8.2.1.1511 OTU 1 seq
prokMSA_id:23582 Ethiopian Gliricidia little leaf phytoplasma 
2.30.8.2.1.1507 OTU 1 seq
prokMSA_id:15626 Phytoplasma sp. str. BoLL
2.30.8.2.1.1508 OTU 5 seqs
prokMSA_id:15636 str. SCWL
prokMSA_id:15641 Phytoplasma sp. str. GaLL
prokMSA_id:83287 Bermuda grass white leaf phytoplasma isolate BGWL-C2
prokMSA_id:83541 Bermuda grass white leaf phytoplasma isolate BGWL-CA
prokMSA_id:86379 Bermuda grass white leaf phytoplasma isolate BGWL-C1
2.30.8.2.1.1509 OTU 22 seqs
prokMSA_id:15611 unnamed organism. X83431
prokMSA_id:15613 Phytoplasma sp. str. StLL
prokMSA_id:15614 unnamed organism. L33761
prokMSA_id:15628 unnamed organism
prokMSA_id:15631 str. AshY1
prokMSA_id:15632 Phytoplasma Ash yellows phytoplasma str. AshY1
prokMSA_id:15633 Phytoplasma Ash yellows phytoplasma str. AshY3
prokMSA_id:15634 Phytoplasma Ash yellows phytoplasma str. AshY5
prokMSA_id:15635 Phytoplasma Ash yellows phytoplasma str. LWB3
prokMSA_id:20661 'Fragaria multicipita' phytoplasma operon A 
prokMSA_id:25804 Sugarcane phytoplasma B StLL 
prokMSA_id:43247 'Fragaria multicipita' phytoplasma operon B 
prokMSA_id:50829 Clover proliferation phytoplasma strain EY-IL 2 
prokMSA_id:52099 Clover proliferation phytoplasma strain EY-IL 1 AF409070
prokMSA_id:60512 Erigeron witches'-broom phytoplasma strain RPWB ; -23S inter
prokMSA_id:66024 Erigeron witches'-broom phytoplasma ; tRNA-Ile complete ; an
prokMSA_id:68906 Brinjal little leaf phytoplasma complete ; and tRNA-Ile comp
prokMSA_id:69030 Periwinkle little leaf phytoplasma complete ; and tRNA-Ile c
prokMSA_id:69575 Stylosanthes little leaf phytoplasma and tRNA-Ile genes
prokMSA_id:69655 Elm phytoplasma 'Arlington Heights' ; tRNA-Ile complete ; an
prokMSA_id:80823 Potato witches'-broom phytoplasma -23S intergenic spacer reg
prokMSA_id:82781 Centaurea solstitialis virescence phytoplasma complete ; tRN
2.30.8.2.1.1514 OTU 1 seq
prokMSA_id:41747 Pigeon pea little leaf phytoplasma 
2.30.8.2.1.1515 OTU 1 seq
prokMSA_id:15630 str. ASHY
2.30.8.2.1.1513 OTU 1 seq
prokMSA_id:23349 Sugarcane phytoplasma I TBB 
2.30.8.2.1.1512 OTU 9 seqs
prokMSA_id:15597 str. CYE-C
prokMSA_id:15599 Phytoplasma Clover yellow edge phytoplasma str. CYE-L
prokMSA_id:15644 unnamed organism
prokMSA_id:38010 Spiraea stunt phytoplasma operon A 
prokMSA_id:38649 Black raspberry witches'-broom phytoplasma clone BRWB7 opero
prokMSA_id:62836 Gaillardia phyllody phytoplasma ; tRNA-Ile complete ; and 23
prokMSA_id:66821 Dandelion virescence phytoplasma operon B 
prokMSA_id:66824 Dandelion virescence phytoplasma operon A 
prokMSA_id:87775 Milkweed yellows phytoplasma ; -23S intergenic spacer region
2.30.8.2.2 MYCOPLASMA-LIKE-ORGANISM_SUBGROUP_II 3 seqs
2.30.8.2.2.1516 OTU 1 seq
prokMSA_id:15651 Phytoplasma sp
2.30.8.2.2.1517 OTU 1 seq
prokMSA_id:69015 Apple proliferation phytoplasma complete ; tRNA-Ile complete
2.30.8.2.2.1518 OTU 1 seq
prokMSA_id:15661 Candidatus Phytoplasma mali IGS1 tRNA-Ile and 23S strain AT
2.30.8.2.3 MYCOPLASMA-LIKE-ORGANISM_SUBGROUP_III 6 seqs
2.30.8.2.3.1519 OTU 1 seq
prokMSA_id:55663 Mexican periwinkle virescence phytoplasma complete ; tRNA-Il
2.30.8.2.3.1520 OTU 2 seqs
prokMSA_id:60694 Buckland valley grapevine yellows phytoplasma operon 
prokMSA_id:67193 Chinaberry yellows phytoplasma strain CbY1 ; -23S intergenic
2.30.8.2.3.1521 OTU 3 seqs
prokMSA_id:15673 Mycoplasma sp. str. STOL. X76427
prokMSA_id:15678 str. VK. X76428
prokMSA_id:69016 Stolbur phytoplasma complete ; tRNA-Ile complete ; and 23S 
2.30.8.2.5 ACP.LAIDLAWII_SUBGROUP 10 seqs
2.30.8.2.5.1523 OTU 7 seqs
prokMSA_id:15667 Phytoplasma sp. =rrnB operon
prokMSA_id:15669 Phytoplasma Australian grapevine yellows phytoplasma subsp
prokMSA_id:15670 unnamed organism
prokMSA_id:15671 Phytoplasma Strawberry green petal phytoplasma str. SGP
prokMSA_id:15672 Phytoplasma Strawberry lethal yellows phytoplasma str. SLY
prokMSA_id:15675 Phytoplasma sp. = operon
prokMSA_id:15689 Acholeplasma oculi ISM 1499
2.30.8.2.5.1522 OTU 3 seqs
prokMSA_id:15691 Acholeplasma laidlawii str. PG8 ATCC 23206
prokMSA_id:15692 Acholeplasma laidlawii str. JA1. M23932
prokMSA_id:83638 Mesoplasma pleciae 
2.30.8.2.7 ANP.VARIUM_SUBGROUP 1 seq
2.30.8.2.7.1524 OTU 1 seq
prokMSA_id:89088 rumen clone JRCJ26 
2.30.8.2.8 C.RAMOSUM_ASSEMBLAGE 5 seqs
2.30.8.2.8.1525 OTU 3 seqs
prokMSA_id:27171 Catenibacterium mitsuokai strain:JCM 10607
prokMSA_id:40839 Catenibacterium mitsuokai strain:JCM 10611
prokMSA_id:46764 Catenibacterium mitsuokai strain:JCM 10606
2.30.8.2.8.1526 OTU 2 seqs
prokMSA_id:15709 Clostridium ramosum str. 113-I ATCC 25582
prokMSA_id:94367 clone Dpcom146 
2.30.8.2.9 EUB.CYLINDROIDES_SUBGROUP 19 seqs
2.30.8.2.9.1530 OTU 1 seq
prokMSA_id:43628 clone p-2731-24E5 
2.30.8.2.9.1528 OTU 1 seq
prokMSA_id:49369 clone p-1763-b3 
2.30.8.2.9.1527 OTU 9 seqs
prokMSA_id:15730 Erysipelothrix rhusiopathiae str. alpha-P15 ATCC 19414 . M23
prokMSA_id:15733 Erysipelothrix rhusiopathiae str. 715
prokMSA_id:15738 Erysipelothrix tonsillarum str. T-305 ATCC 43339
prokMSA_id:32211 clone CR99-2-48 
prokMSA_id:33753 Erysipelothrix rhusiopathiae 
prokMSA_id:38274 Erysipelothrix tonsillarum 
prokMSA_id:77952 Erysipelothrix rhusiopathiae -23S spacer region strain:ATCC 
prokMSA_id:77965 Erysipelothrix rhusiopathiae -23S spacer region strain:715
prokMSA_id:78170 Erysipelothrix tonsillarum -23S spacer region strain:ATCC 43
2.30.8.2.9.1529 OTU 3 seqs
prokMSA_id:15736 biforme ATCC 27806 . M59230
prokMSA_id:15737 clone T21. Z94006
prokMSA_id:50433 clone p-392-o3 
2.30.8.2.9.1531 OTU 2 seqs
prokMSA_id:15734 Clostridium innocuum str. B-3 ATCC 14501 . M23732
prokMSA_id:15735 str. CM970
2.30.8.2.9.1532 OTU 3 seqs
prokMSA_id:15721 cylindroides ATCC 27803 . L34617
prokMSA_id:49837 cylindroides 
prokMSA_id:72786 cylindroides L34617
2.30.8.3 SPIROPLASMA_GROUP 20 seqs
2.30.8.3.1 M.MYCOIDES_SUBGROUP 9 seqs
2.30.8.3.1.1533 OTU 1 seq
prokMSA_id:15756 Entomoplasma freundtii
2.30.8.3.1.1535 OTU 7 seqs
prokMSA_id:15741 Mycoplasma mycoides subsp. capri str. PG3 =
prokMSA_id:15743 Mycoplasma mycoides subsp. mycoides str. UM30847 =rrnB
prokMSA_id:15755 Mycoplasma mycoides subsp. capri str. PG3 =rrnB
prokMSA_id:15764 Mycoplasma mycoides subsp. mycoides str. UM30847 ATCC 33557.
prokMSA_id:15767 Mycoplasma mycoides subsp. mycoides str. Y-goat =
prokMSA_id:15770 Mycoplasma mycoides subsp. mycoides str. Y-goat =rrnB
prokMSA_id:15772 Mycoplasma mycoides subsp. mycoides str. UM30847 =
2.30.8.3.1.1534 OTU 1 seq
prokMSA_id:15759 str. 8756-13
2.30.8.3.2 M.PUTREFACIENS_SUBGROUP 4 seqs
2.30.8.3.2.1536 OTU 4 seqs
prokMSA_id:15784 Mycoplasma cottewii str. VIS ATCC 51347
prokMSA_id:15785 Mycoplasma yeatsii str. GIH ATCC 51346 . U67946
prokMSA_id:15786 Mycoplasma putrefaciens str. KS-1 = + rrnB
prokMSA_id:15787 Mycoplasma putrefaciens str. C30 KS-1 ATCC 15718 . M23938
2.30.8.3.3 MES.SEIFFERTII 1 seq
2.30.8.3.3.1537 OTU 1 seq
prokMSA_id:15788 Mesoplasma seiffertii
2.30.8.3.4 ENP.MELALEUCAE_SUBGROUP 2 seqs
2.30.8.3.4.1538 OTU 2 seqs
prokMSA_id:15789 Entomoplasma ellychniae str. ELCN-1 ATCC 43707 . M24292
prokMSA_id:75831 Mesoplasma corruscae 
2.30.8.3.6 SPP.GLADIATORIS_SUBGROUP 1 seq
2.30.8.3.6.1539 OTU 1 seq
prokMSA_id:93470 Entomoplasma melaleucae 
2.30.8.3.7 SPP.CITRI_SUBGROUP 3 seqs
2.30.8.3.7.1540 OTU 3 seqs
prokMSA_id:15801 Spiroplasma poulsonii str. DW-1 ATCC 43153 . M24483
prokMSA_id:15802 Spiroplasma citri str. Maroc-R8-A2 ATCC 27556 . M23942
prokMSA_id:15803 Spiroplasma citri str. R8A2HP
2.30.8.4 M.PNEUMONIAE_GROUP 31 seqs
2.30.8.4.1 UPL.UREALYTICUM_SUBGROUP 21 seqs
2.30.8.4.1.1541 OTU 20 seqs
prokMSA_id:15806 Ureaplasma urealyticum str. Pi serovar 6 ATCC 27818
prokMSA_id:15807 Ureaplasma urealyticum str. 7 serovar 1 ATCC 27813
prokMSA_id:15808 Ureaplasma urealyticum str. U26 serovar 14 ATCC 33697
prokMSA_id:15809 Ureaplasma urealyticum str. 7 serovar 1 ATCC 27813
prokMSA_id:15810 Ureaplasma urealyticum str. U26 serovar 14 ATCC 33697
prokMSA_id:15812 Ureaplasma urealyticum ATCC 27815
prokMSA_id:15813 Ureaplasma urealyticum str. Pi serovar 6 ATCC 27818
prokMSA_id:15815 Ureaplasma urealyticum str. 23 serovar 2 ATCC 27814
prokMSA_id:15817 Ureaplasma urealyticum str. 23 serovar 2 ATCC 27814
prokMSA_id:15818 Ureaplasma urealyticum ATCC 27816
prokMSA_id:15821 Ureaplasma urealyticum str. 960 ATCC 27618
prokMSA_id:15822 Ureaplasma urealyticum ATCC 33175
prokMSA_id:15823 Ureaplasma urealyticum ATCC 33699
prokMSA_id:15824 Ureaplasma urealyticum ATCC 33695
prokMSA_id:15825 Ureaplasma urealyticum ATCC 33696
prokMSA_id:15826 Ureaplasma urealyticum ATCC 33698
prokMSA_id:15831 Ureaplasma gallorale ATCC 43346
prokMSA_id:40947 Ureaplasma urealyticum section 13 of 59 of the complete geno
prokMSA_id:48336 Ureaplasma urealyticum complete genome
prokMSA_id:50881 Ureaplasma urealyticum section 28 of 59 of the complete geno
2.30.8.4.1.1542 OTU 1 seq
prokMSA_id:15811 Ureaplasma urealyticum str. 27
2.30.8.4.2 M.IOWAE_SUBGROUP 7 seqs
2.30.8.4.2.1544 OTU 3 seqs
prokMSA_id:15833 Mycoplasma penetrans str. GTU-54-6A1
prokMSA_id:76821 Mycoplasma penetrans complete genome
prokMSA_id:76952 Mycoplasma penetrans genomic complete section 5/5
2.30.8.4.2.1543 OTU 4 seqs
prokMSA_id:15834 Mycoplasma muris str. RIII4 ATCC 33757 . M23939
prokMSA_id:15835 Mycoplasma iowae str. 695 ATCC 33552 . M24293
prokMSA_id:15836 Mycoplasma iowae str. PPAV
prokMSA_id:15839 Mycoplasma iowae
2.30.8.4.4 M.GALLISEPTICUM_SUBGROUP 3 seqs
2.30.8.4.4.1545 OTU 1 seq
prokMSA_id:15848 Mycoplasma alvi str. Isley
2.30.8.4.4.1547 OTU 1 seq
prokMSA_id:15855 Mycoplasma gallisepticum str. S6; A5969 = operon
2.30.8.4.4.1546 OTU 1 seq
prokMSA_id:15851 Mycoplasma testudinis str. 010 ATCC 43263
2.30.8.5 M.HOMINIS_GROUP 89 seqs
2.30.8.5.2 M.HYOPNEUMONIAE_SUBGROUP 15 seqs
2.30.8.5.2.1549 OTU 5 seqs
prokMSA_id:15864 Mycoplasma flocculare str. Ms42
prokMSA_id:15867 Mycoplasma flocculare str. Ms42
prokMSA_id:15870 Mycoplasma ovipneumoniae str. Y-98
prokMSA_id:15874 Mycoplasma flocculare str. Ms42 ATCC 27399
prokMSA_id:19656 Mycoplasma dispar 
2.30.8.5.2.1548 OTU 7 seqs
prokMSA_id:15872 Mycoplasma conjunctivae str. HRC/583
prokMSA_id:15876 Mycoplasma hyopneumoniae
prokMSA_id:15878 Mycoplasma hyorhinis ATCC VR-2580
prokMSA_id:15880 Mycoplasma hyopneumoniae str. Weybridge ATCC 27719
prokMSA_id:21580 of Mycoplasma hyopneumoniae 
prokMSA_id:31894 Mycoplasma hyorhinis 
prokMSA_id:44198 M.hyopneumoniae 5' end AH001708
2.30.8.5.2.1550 OTU 1 seq
prokMSA_id:999995 SYN M.neuro
2.30.8.5.2.1551 OTU 2 seqs
prokMSA_id:15879 Mycoplasma sualvi str. Mayfield B ATCC 33004 . M23936
prokMSA_id:39647 Mycoplasma sualvi 
2.30.8.5.3 M.HOMINIS_SUBGROUP 19 seqs
2.30.8.5.3.1553 OTU 3 seqs
prokMSA_id:15881 Mycoplasma arthritidis str. PG6 ATCC 19611 . M24580
prokMSA_id:15891 Mycoplasma indiense str. 3T
prokMSA_id:60547 Mycoplasma timone 
2.30.8.5.3.1554 OTU 13 seqs
prokMSA_id:15892 Mycoplasma hominis str. 183. M96660
prokMSA_id:15896 Mycoplasma spumans str. PG13. AF125587
prokMSA_id:15897 Mycoplasma falconis str. H/T1. AF125591
prokMSA_id:15898 Mycoplasma hyosynoviae
prokMSA_id:19704 Mycoplasma hominis rrnB operon strain SC4
prokMSA_id:23718 Mycoplasma hominis rrnB operon strain PG21
prokMSA_id:40026 Mycoplasma hominis rrnB operon strain P2
prokMSA_id:49564 Mycoplasma hominis rrnB operon strain 7488
prokMSA_id:59733 Mycoplasma spumans ; -23S intergenic spacer complete ; and 2
prokMSA_id:71453 Mycoplasma phocicerebrale AF304323
prokMSA_id:72086 Mycoplasma equirhinis strain M432/72 AF125585
prokMSA_id:72462 Mycoplasma phocae AF304325
prokMSA_id:74598 Mycoplasma hominis rrnB operon strain DC63
2.30.8.5.3.1552 OTU 1 seq
prokMSA_id:15886 Mycoplasma canadense str. 275c
2.30.8.5.3.1555 OTU 2 seqs
prokMSA_id:15889 Mycoplasma alkalescens str. PG51 . U44764
prokMSA_id:15902 Mycoplasma auris str. UIA ATCC 51348
2.30.8.5.5 M.BOVIRHINIS_SUBGROUP 10 seqs
2.30.8.5.5.1556 OTU 7 seqs
prokMSA_id:15918 Mycoplasma corogypsi str. BV1 ATCC 51148 . L08054
prokMSA_id:15922 Mycoplasma gallinaceum str. DD. L24104
prokMSA_id:15925 Mycoplasma 94630 str. 94630
prokMSA_id:28733 Mycoplasma verecundum 
prokMSA_id:32469 Mycoplasma crocodyli 
prokMSA_id:49382 Mycoplasma alligatoris 
prokMSA_id:71789 Mycoplasma anatis AF412970
2.30.8.5.5.1557 OTU 3 seqs
prokMSA_id:53013 Mycoplasma cynos 
prokMSA_id:56134 Mycoplasma collis ; -23S intergenic spacer complete ; and 23
prokMSA_id:71155 Mycoplasma cynos ; -23S intergenic spacer complete ; and 23S
2.30.8.5.6 M.HYOPHARYNGIS_SUBGROUP 1 seq
2.30.8.5.6.1558 OTU 1 seq
prokMSA_id:15931 Mycoplasma hyopharyngis str. H3-6B F
2.30.8.5.7 M.AGALACTIAE_SUBGROUP 11 seqs
2.30.8.5.7.1559 OTU 11 seqs
prokMSA_id:15933 Mycoplasma agalactiae str. PG2 . U44763
prokMSA_id:15934 Mycoplasma agalactiae str. PG2 NCTC 10123 . M24290
prokMSA_id:51117 Mycoplasma agalactiae strain 847.121 
prokMSA_id:70015 Mycoplasma agalactiae strain 35 AF332751
prokMSA_id:70634 Mycoplasma agalactiae strain 4136/96 no 2 AF332750
prokMSA_id:71755 Mycoplasma agalactiae strain 5725 AF332746
prokMSA_id:71854 Mycoplasma agalactiae strain 25/95 AF332749
prokMSA_id:73703 Mycoplasma agalactiae strain 396/12 AF332745
prokMSA_id:73746 Mycoplasma agalactiae strain L9 AF332748
prokMSA_id:74108 Mycoplasma agalactiae strain 17 AF332747
prokMSA_id:74234 Mycoplasma agalactiae strain M133/87 AF332743
2.30.8.5.8 M.MELEAGRIDIS_SUBGROUP 33 seqs
2.30.8.5.8.1560 OTU 22 seqs
prokMSA_id:15952 Mycoplasma bovigenitalium str. PG11 ATCC 19852 . M24291
prokMSA_id:15954 Mycoplasma californicum str. ST-6 ATCC 33461 . M24582
prokMSA_id:19295 Mycoplasma lipofaciens isolate R171 
prokMSA_id:19819 Mycoplasma bovigenitalium strain 2001-035TU 
prokMSA_id:55778 Mycoplasma bovigenitalium isolate 988/80 
prokMSA_id:62437 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 48SR99 
prokMSA_id:62438 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 52SR99 
prokMSA_id:62440 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 52SR98 
prokMSA_id:62442 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 3SR99 
prokMSA_id:62446 Mycoplasma bovigenitalium isolate 434/81 
prokMSA_id:62449 Mycoplasma bovigenitalium strain PG 11 
prokMSA_id:70063 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 126SR99 
prokMSA_id:70186 Mycoplasma bovigenitalium isolate 57B00 AY121096
prokMSA_id:70343 Mycoplasma columbinasale isolate 694 AF221112
prokMSA_id:71448 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 12SR98 A
prokMSA_id:71679 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 129SR99 
prokMSA_id:72219 Mycoplasma phocirhinis AF304324
prokMSA_id:72631 Mycoplasma bovigenitalium isolate 398/87 AY121109
prokMSA_id:72958 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 122SR99 
prokMSA_id:73778 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 48SR98 A
prokMSA_id:73988 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 95SR99 A
prokMSA_id:74382 Mycoplasma sp. 'ovine/caprine serogroup 11' strain 2D AY1210
2.30.8.5.8.1561 OTU 11 seqs
prokMSA_id:15936 Mycoplasma sp. str. Patient#88
prokMSA_id:15948 Mycoplasma iners. AF064063
prokMSA_id:15949 Mycoplasma gallinarum str. PG16. L24105
prokMSA_id:15953 Mycoplasma simbae ATCC 49888 . U16323
prokMSA_id:19193 Mycoplasma opalescens isolate MH5408 
prokMSA_id:19645 Mycoplasma spermatophilum isolate AH159 
prokMSA_id:50081 Mycoplasma iners isolate PG30 
prokMSA_id:60702 Mycoplasma sp. HRC689 /23S intergenic spacer complete ; and 
prokMSA_id:71570 Mycoplasma columbinum isolate MMP-1 AF221113
prokMSA_id:71629 Mycoplasma opalescens complete ; and 23S AF538961
prokMSA_id:73061 Mycoplasma caviae isolate G122 AF221111
2.30.9 CLOSTRIDIUM_AND_RELATIVES 262 seqs
2.30.9.1 C.LEPTUM_GROUP 114 seqs
2.30.9.1.1 C.THERMOCELLUM_SUBGROUP 23 seqs
2.30.9.1.1.1564 OTU 8 seqs
prokMSA_id:15957 Clostridium papyrosolvens ATCC 35413 . X71852
prokMSA_id:15961 Clostridium FCB90-2 str. FCB90-2
prokMSA_id:15962 Clostridium sp. str. RCel1
prokMSA_id:15977 Clostridium josui str. III FERM P-9684
prokMSA_id:15998 Clostridium cellulolyticum ATCC 35319 . X71847
prokMSA_id:21306 clone p-241-o5 
prokMSA_id:31392 clone p-422-o3 
prokMSA_id:82053 Faecalibacterium prausnitzii clone 1-79 
2.30.9.1.1.1562 OTU 1 seq
prokMSA_id:53642 Clostridium thermosuccinogenes strain DSM 5807
2.30.9.1.1.1563 OTU 1 seq
prokMSA_id:16001 clone WCHB1-21
2.30.9.1.1.1565 OTU 6 seqs
prokMSA_id:23070 equine intestinal sp. ML34 clone ML34
prokMSA_id:25054 clone p-1082-a5 
prokMSA_id:26264 clone p-1637-c5 
prokMSA_id:36271 Clostridium methylpentosum strain DSM 5476
prokMSA_id:95297 Clostridium sp. clone AC033 
prokMSA_id:97986 Clostridium sp. clone AC020 
2.30.9.1.1.1566 OTU 4 seqs
prokMSA_id:15985 clone WsCH5. AF050628
prokMSA_id:15986 clone WsCH8. AF050629
prokMSA_id:37933 clone RA13C8 
prokMSA_id:53823 SHA-219 
2.30.9.1.1.1567 OTU 2 seqs
prokMSA_id:15983 Clostridium thermocellum. NONE
prokMSA_id:15989 Clostridium thermocellum DSM 1237
2.30.9.1.1.1568 OTU 1 seq
prokMSA_id:82466 clone ZZ12C1 
2.30.9.1.2 C.THERMOLACTICUM_SUBGROUP 7 seqs
2.30.9.1.2.1569 OTU 3 seqs
prokMSA_id:16011 str. Rt51.B1
prokMSA_id:16012 Clostridium stercorarium NCIMB 11754
prokMSA_id:16014 Clostridium thermolacticum str. TC 21 DSM 2911. L09176
2.30.9.1.2.1570 OTU 4 seqs
prokMSA_id:16008 Clostridium stercorarium. NONE
prokMSA_id:31278 Clostridium stercorarium strain DSM 8532T
prokMSA_id:40758 Clostridium stercorarium subsp. leptospartum 
prokMSA_id:75104 Moorella sp. F21 cds
2.30.9.1.3 C.LEPTUM_SUBGROUP 84 seqs
2.30.9.1.3.1573 OTU 2 seqs
prokMSA_id:19757 equine intestinal sp. DW04 clone DW04
prokMSA_id:36503 clone p-4322-4Wa3 
2.30.9.1.3.1572 OTU 1 seq
prokMSA_id:16067 Ruminococcus flavefaciens str. NJ
2.30.9.1.3.1571 OTU 3 seqs
prokMSA_id:16379 rumen 3C0d-11 AB034011
prokMSA_id:45641 rumen 3C0d-8 AB034008
prokMSA_id:52653 microorganism clone Col97
2.30.9.1.3.1574 OTU 1 seq
prokMSA_id:30239 equine intestinal sp. DL22 clone DL22
2.30.9.1.3.1577 OTU 2 seqs
prokMSA_id:20780 equine intestinal sp. CL19 clone CL19
prokMSA_id:43051 clone p-810-a5 
2.30.9.1.3.1576 OTU 13 seqs
prokMSA_id:13866 clone RFN65
prokMSA_id:15982 clone RFN80
prokMSA_id:15994 clone RFN70. AB009218
prokMSA_id:16060 clone RC5
prokMSA_id:16158 clone RC30
prokMSA_id:16692 rumen 3C0d-12 AB034012
prokMSA_id:27711 rumen 4C0d-10 
prokMSA_id:29646 rumen 3C0d-20 AB034035
prokMSA_id:40486 equine intestinal sp. CL36 clone CL36
prokMSA_id:46259 equine intestinal sp. CL16 clone CL16
prokMSA_id:83170 rumen clone BS7 
prokMSA_id:85102 rumen clone BS6 
prokMSA_id:90398 rumen clone JRCJ60 
2.30.9.1.3.1575 OTU 16 seqs
prokMSA_id:16023 str. ASF 500
prokMSA_id:16072 Clostridium viride str. T2-7 DSM 6836 . X81125
prokMSA_id:19089 adhufec269 
prokMSA_id:19113 Oscillospira guillermondii clone:OSC3
prokMSA_id:21299 equine intestinal sp. MW07 clone MW07
prokMSA_id:21464 Oscillospira guillermondii clone:OSC5
prokMSA_id:31587 Oscillospira guillermondii clone:OSC1
prokMSA_id:41119 Oscillospira guillermondii clone:OSC2
prokMSA_id:49276 Oscillospira guillermondii clone:OSC4
prokMSA_id:49618 equine intestinal sp. PW010 clone PW10
prokMSA_id:53455 low G+C gram-positive 
prokMSA_id:58006 clone:C-6
prokMSA_id:66188 clone IA-24
prokMSA_id:85153 rumen clone BF30 
prokMSA_id:95502 clone rc5-48 complete AY239442
prokMSA_id:98332 clone rc5-6 complete AY239443
2.30.9.1.3.1578 OTU 28 seqs
prokMSA_id:3884 Treponema IV:18:C9 str. IV:18:C9. AF023042
prokMSA_id:16044 siraeum ATCC 29066 . L34625
prokMSA_id:16058 Anaerofilum agile str. F DSM 4272 . X98011
prokMSA_id:16080 Fusobacterium prausnitzii ATCC 27766. X85022
prokMSA_id:16081 Anaerofilum pentosovorans str. Fae DSM 7168 . X97852
prokMSA_id:17499 clone p-2203-s959-3 AF371729
prokMSA_id:18308 clone p-2617-9F5 
prokMSA_id:18361 Butyrate-producing A2-165 
prokMSA_id:18520 clone p-1720-b3 
prokMSA_id:21362 clone HuCB5
prokMSA_id:22018 clone HuCA10
prokMSA_id:26836 clone p-2423-55G5 
prokMSA_id:27866 Fusobacterium prausnitzii strain ATCC 27768
prokMSA_id:28428 clone p-2557-9F5 
prokMSA_id:28809 clone p-5228-4Wb5 
prokMSA_id:31395 Butyrate-producing L2-6 AJ270470
prokMSA_id:33668 clone p-417-o3 
prokMSA_id:35563 clone HuCA11
prokMSA_id:37047 clone p-1706-b3 
prokMSA_id:37658 clone p-1721-b3 
prokMSA_id:38076 low G+C gram-positive 
prokMSA_id:40793 clone HuCB29
prokMSA_id:49003 clone p-2571-9F5 
prokMSA_id:51306 clone p-2576-9F5 
prokMSA_id:53461 clone p-1749-b3 
prokMSA_id:55961 clone:C-16
prokMSA_id:94916 Treponema sp. OMZ 840 
prokMSA_id:95570 clone rc4-42 complete AY239453
2.30.9.1.3.1579 OTU 11 seqs
prokMSA_id:16033 clone CA26
prokMSA_id:16034 clone BA18
prokMSA_id:17791 equine intestinal sp. CL30 clone CL30
prokMSA_id:23510 equine intestinal sp. ML41 clone ML41
prokMSA_id:24789 equine intestinal sp. PL19 clone PL19
prokMSA_id:30529 equine intestinal sp. MW02 clone MW02
prokMSA_id:31962 equine intestinal sp. DW13 clone DW13
prokMSA_id:38530 clone p-249-o5 
prokMSA_id:45365 clone p-320-a3 
prokMSA_id:88285 clone YRCE58 
prokMSA_id:90193 clone YRCE09 
2.30.9.1.3.1583 OTU 2 seqs
prokMSA_id:16056 desmolans ATCC 43058 . L34618
prokMSA_id:49455 Butyrate-producing A2-207 
2.30.9.1.3.1582 OTU 1 seq
prokMSA_id:88085 clone YRCA14 
2.30.9.1.3.1584 OTU 2 seqs
prokMSA_id:16024 Clostridium leptum ATCC 29065 . M59095
prokMSA_id:32491 Clostridium leptum strain DSM 753T
2.30.9.1.3.1581 OTU 1 seq
prokMSA_id:16652 clone HuCB7
2.30.9.1.3.1580 OTU 1 seq
prokMSA_id:46373 equine intestinal sp. CW05 clone CW05
2.30.9.2 C.BOTULINUM_GROUP 148 seqs
2.30.9.2.1 CCS.OWENSENSIS_SUBGROUP 12 seqs
2.30.9.2.1.1585 OTU 5 seqs
prokMSA_id:16088 Caldicellulosiruptor owensensis str. OL ATCC 700167
prokMSA_id:16091 str. SP83. X93020
prokMSA_id:16099 str. COMP.B1. L09179
prokMSA_id:16103 "Anaerocellum thermophilum" str. Z-1203 ?. L09180
prokMSA_id:16105 "Anaerocellum thermophilum" str. Z-1203 ?
2.30.9.2.1.1587 OTU 4 seqs
prokMSA_id:16089 str. Rt8B.4
prokMSA_id:16092 str. Ok9.B1. L09186
prokMSA_id:16096 str. Rt8.B7. L09184
prokMSA_id:16102 str. Rt8. B15. L09185
2.30.9.2.1.1586 OTU 2 seqs
prokMSA_id:16094 Caldicellulosiruptor lactoaceticus str. 6A DSM 9545
prokMSA_id:16095 Caldicellulosiruptor kristjanssonii str. I77R1B. AJ004811
2.30.9.2.1.1588 OTU 1 seq
prokMSA_id:16101 str. Wai35 B1
2.30.9.2.3 CLR.FERVIDUS_SUBGROUP 4 seqs
2.30.9.2.3.1589 OTU 1 seq
prokMSA_id:16107 Thermobrachium celer str. JW/YL-NZ35
2.30.9.2.3.1591 OTU 1 seq
prokMSA_id:16111 Caloramator fervidus str. RT4. B1 ATCC 43204
2.30.9.2.3.1590 OTU 2 seqs
prokMSA_id:38722 Caloramator sp. JW/JH-1 clone JH-5long 
prokMSA_id:68459 Caloramator uzoniensis 
2.30.9.2.5 C.THERMOBUTYRICUM_SUBGROUP 14 seqs
2.30.9.2.5.1593 OTU 13 seqs
prokMSA_id:16120 Clostridium homopropionicum DSM 5847
prokMSA_id:16123 Clostridium novyi str. A NCTC 538. X68188
prokMSA_id:16124 Clostridium novyi str. 151 L.S. McClung ATCC 17861
prokMSA_id:16125 Clostridium botulinum str. 468 toxin C
prokMSA_id:16126 Clostridium botulinum str. 2220 ATCC 17782. L37590
prokMSA_id:16127 Clostridium botulinum str. 2023 ATCC 17851
prokMSA_id:16128 Clostridium botulinum str. D 6f NCTC 8265. X68187
prokMSA_id:19010 Clostridium novyi strain:ATCC19402
prokMSA_id:22235 Clostridium novyi 
prokMSA_id:23882 Clostridium haemolyticum strain DSM 5565
prokMSA_id:28961 Clostridium novyi strain:ATCC27323
prokMSA_id:29512 Clostridium haemolyticum 
prokMSA_id:29673 Clostridium novyi 
2.30.9.2.5.1592 OTU 1 seq
prokMSA_id:35447 Clostridium thermopalmarium 
2.30.9.2.6 C.BOTULINUM_SUBGROUP 7 seqs
2.30.9.2.6.1594 OTU 4 seqs
prokMSA_id:16142 Clostridium pasteurianum ATCC 6013 . M23930
prokMSA_id:34959 Clostridium acidisoli strain CK74
prokMSA_id:96743 Clostridium sp. B905-1 AB114235
prokMSA_id:97778 Clostridium sp. B904-4 AB114236
2.30.9.2.6.1596 OTU 2 seqs
prokMSA_id:16144 Clostridium tyrobutyricum NIZO 51
prokMSA_id:16153 Clostridium tyrobutyricum ATCC 25755 . M59113
2.30.9.2.6.1595 OTU 1 seq
prokMSA_id:16145 clone SJA-65
2.30.9.2.8 C.COCHLEARIUM_SUBGROUP 4 seqs
2.30.9.2.8.1597 OTU 1 seq
prokMSA_id:35153 HRS-22 
2.30.9.2.8.1598 OTU 3 seqs
prokMSA_id:16163 Clostridium sp. str. RPec1
prokMSA_id:16196 Clostridium cadaveris ATCC 25783 . M59086
prokMSA_id:60611 clone R10 AF407686
2.30.9.2.9 C.SUBTERMINALE_SUBGROUP 28 seqs
2.30.9.2.9.1599 OTU 23 seqs
prokMSA_id:16141 Clostridium botulinum str. LP1284
prokMSA_id:16143 Clostridium botulinum NCTC 7272
prokMSA_id:16149 Clostridium botulinum str. Langeland NCTC 10281
prokMSA_id:16156 Clostridium scatologenes ATCC 25775 . M59104
prokMSA_id:16162 Clostridium pascui str. cm19 DSM 10365
prokMSA_id:16165 Clostridium malenominatum ATCC 25776 . M59099
prokMSA_id:16166 Clostridium tetani NCTC 279
prokMSA_id:16167 Clostridium cochlearium ATCC 17787 . M59093
prokMSA_id:16177 Clostridium PENDANT-1
prokMSA_id:16224 Clostridium cellulovorans DSM 3052
prokMSA_id:16231 Clostridium cellulovorans DSM 3052
prokMSA_id:16237 Clostridium barati VPI 1586. M59102
prokMSA_id:20034 Clostridium scatologenes 
prokMSA_id:20268 Clostridium sp. Irt-JG1-73 
prokMSA_id:26148 Clostridium peptidovorans 
prokMSA_id:64232 Clostridium scatologenes strain FP
prokMSA_id:66534 clone cvf77019 
prokMSA_id:75821 Swine manure RT-8B 
prokMSA_id:79176 Clostridium tetani E88 section 1 of 10 of the complete genom
prokMSA_id:79236 Clostridium tetani E88 section 2 of 10 of the complete genom
prokMSA_id:79542 Clostridium tetani E88 section 10 of 10 of the complete geno
prokMSA_id:81074 PTCE-T2A 5A 
prokMSA_id:93376 Clostridium proteolyticus strain AP-15
2.30.9.2.9.1601 OTU 1 seq
prokMSA_id:16178 Clostridium argentinense ATCC 27322
2.30.9.2.9.1600 OTU 4 seqs
prokMSA_id:16115 Clostridium limosum ATCC 25620 . M59096
prokMSA_id:16176 Clostridium PENDANT-16
prokMSA_id:79436 Clostridium tunisiense 
prokMSA_id:94261 Clostridium sp. rennanqilfy33 AY363380
2.30.9.2.10 C.ACETOBUTYLICUM_SUBGROUP 7 seqs
2.30.9.2.10.1602 OTU 7 seqs
prokMSA_id:16185 Clostridium collagenovorans DSM 3089 . X73439
prokMSA_id:16186 Clostridium sardiniensis ATCC 33455 . X73446
prokMSA_id:16189 Clostridium acetobutylicum ATCC 824
prokMSA_id:18375 Clostridium felsineum NCIMB 10690 
prokMSA_id:20598 Clostridium felsineum DSM 794 
prokMSA_id:46897 Clostridium roseum strain DSM 6424
prokMSA_id:47394 Clostridium acetobutylicum ATCC824 complete genome
2.30.9.2.11 C.BARATI_SUBGROUP 72 seqs
2.30.9.2.11.1 C.CADAVERIS_SUBGROUP 8 seqs
2.30.9.2.11.1.1604 OTU 2 seqs
prokMSA_id:16195 unnamed organism
prokMSA_id:22668 Arthromitus sp. SFB-trout ribosmal 
2.30.9.2.11.1.1603 OTU 6 seqs
prokMSA_id:16192 unnamed organism
prokMSA_id:16193 unnamed organism
prokMSA_id:16194 unnamed organism
prokMSA_id:22435 clone S24-9
prokMSA_id:70665 of a segment E11861
prokMSA_id:72493 of novel Segmented filamentous BAL01 E11886
2.30.9.2.11.2 C.ALGIDICARNIS_SUBGROUP 4 seqs
2.30.9.2.11.2.1605 OTU 3 seqs
prokMSA_id:16199 Anaerobacter polyendosporus
prokMSA_id:42703 Anaerobacter polyendosporus strain DSM 5272 Y18189
prokMSA_id:66492 clone cvf58051 
2.30.9.2.11.2.1606 OTU 1 seq
prokMSA_id:81682 Clostridium fallax isolate VA24831_02 
2.30.9.2.11.3 C.PERFRINGENS_SUBGROUP 6 seqs
2.30.9.2.11.3.1608 OTU 3 seqs
prokMSA_id:16201 Sarcina ventriculi DSM 286. X76649
prokMSA_id:16202 Sarcina ventriculi
prokMSA_id:73781 clone p-37-a5 AF371846
2.30.9.2.11.3.1607 OTU 3 seqs
prokMSA_id:16211 Clostridium perfringens ATCC 13124 . M59103
prokMSA_id:26184 clone p-4636-2Wa2 
prokMSA_id:68917 Clostridium perfringens rrnH operon tRNA-Ile 23S 5S genes co
2.30.9.2.11.4 C.AURANTIBUTYRICUM_SUBGROUP 45 seqs
2.30.9.2.11.4.1613 OTU 12 seqs
prokMSA_id:16243 Clostridium caliptrosporum DSM 5905
prokMSA_id:16248 Clostridium saccharoperbutylacetonicum str. N1-4 ATCC 13564
prokMSA_id:16266 Clostridium acetobutylicum NCP 262
prokMSA_id:16270 Clostridium acetobutylicum NCP 262
prokMSA_id:16275 Clostridium beijerinckii NCIMB 8052
prokMSA_id:31869 nitritogenes 
prokMSA_id:40062 multiforme 
prokMSA_id:59906 low G+C Gram-positive clone ccslm2120 AY133085
prokMSA_id:74851 budayi 
prokMSA_id:97327 clone Dpcom127 
prokMSA_id:98062 Clostridium sp. Usu-S-R3 
prokMSA_id:98385 Clostridium sp. B908-1 AB114250
2.30.9.2.11.4.1612 OTU 17 seqs
prokMSA_id:16218 Clostridium septicum ATCC 12464
prokMSA_id:16235 Clostridium chauvoei ATCC 10092
prokMSA_id:16238 Clostridium carnis ATCC 25777 . M59091
prokMSA_id:16252 Clostridium butyricum str. E.VI.3.6.1 NCIMB 8082
prokMSA_id:16253 Clostridium butyricum str. strain MW8. AJ002592
prokMSA_id:16255 Clostridium butyricum ATCC 43755
prokMSA_id:16261 Clostridium butyricum str. MMP3 DSM 2478
prokMSA_id:16271 Clostridium puniceum DSM 2619 . X71857
prokMSA_id:16276 Clostridium sp. str. RXyl1
prokMSA_id:18909 HRS-7 
prokMSA_id:19880 equine intestinal sp. PL23 clone PL23
prokMSA_id:19926 Clostridium butyricum strain IBUN 64A
prokMSA_id:21382 Clostridium butyricum strain IBUN 125C
prokMSA_id:33631 Clostridium butyricum strain IBUN 22A
prokMSA_id:54713 clone p-234-o5 
prokMSA_id:70497 Clostridium septicum U59278
prokMSA_id:76200 Clostridium colicanis strain 13634
2.30.9.2.11.4.1611 OTU 4 seqs
prokMSA_id:16215 Clostridium paraputrificum ATCC 25780 . X75907
prokMSA_id:16216 Clostridium longisporum DSM 8431
prokMSA_id:16228 Clostridium paraputrificum str. M-21
prokMSA_id:41948 clone p-2106-s959-2 
2.30.9.2.11.4.1610 OTU 7 seqs
prokMSA_id:16236 Clostridium tertium ATCC 14573. AJ245413
prokMSA_id:16245 Clostridium botulinum str. 36208 ATCC 9564. L37592
prokMSA_id:16246 Clostridium botulinum str. Iwanai
prokMSA_id:16262 Clostridium botulinum str. Eklund 17B ATCC 25765
prokMSA_id:25889 Clostridium sartagoformum strain DSM 129
prokMSA_id:33186 Clostridium sp. 75064 
prokMSA_id:38488 Clostridium tertium strain DSM 2485
2.30.9.2.11.4.1609 OTU 1 seq
prokMSA_id:34679 clone p-2171-s959-3 
2.30.9.2.11.4.1615 OTU 1 seq
prokMSA_id:91168 Clostridium sp. L15 complete 
2.30.9.2.11.4.1614 OTU 3 seqs
prokMSA_id:16226 Clostridium sp. AJ243511
prokMSA_id:16227 Clostridium vincentii
prokMSA_id:47464 clone p-2194-s959-3 
2.30.9.2.11.5 C.BUTYRICUM_SUBGROUP 9 seqs
2.30.9.2.11.5.1617 OTU 1 seq
prokMSA_id:16259 Clostridium beijerinckii DSM 791
2.30.9.2.11.5.1616 OTU 1 seq
prokMSA_id:16242 Clostridium botulinum str. Eklund 202F ATCC 23387
2.30.9.2.11.5.1618 OTU 1 seq
prokMSA_id:19737 clone P3IU-35 
2.30.9.2.11.5.1619 OTU 6 seqs
prokMSA_id:16217 nitritogenes DSM 3985 . NONE
prokMSA_id:16250 Clostridium beijerinckii NCIMB 9362
prokMSA_id:34846 Clostridium beijerinckii strain:JCM 7844
prokMSA_id:67023 Clostridium butyricum strain E5 AJ458419
prokMSA_id:67024 Clostridium butyricum strain DSM 5431 AJ458418
prokMSA_id:67025 Clostridium butyricum strain DSM 5430 AJ458417
3 EUKARYOTES 477 seqs
3.1 MICROSPORIDIA 2 seqs
3.1.1 APANSPOROBALSTINA 1 seq
3.1.1.3 NOSEMATIDAE 1 seq
3.1.1.3.1620 OTU 1 seq
prokMSA_id:302117 Nosema sp. str. NIS-M11 microsporidian
3.1.4 PEREZIIDAE 1 seq
3.1.4.1 AMESON 1 seq
3.1.4.1.1621 OTU 1 seq
prokMSA_id:302258 Ameson michaelis microsporidian
3.2 PARABASALIDEA 2 seqs
3.2.2 Trichomonadida 2 seqs
3.2.2.1622 OTU 2 seqs
prokMSA_id:302643 Tritrichomonas foetus str. CROP-1 parasitic protozoan which 
prokMSA_id:302964 Tritrichomonas foetus ATCC 30924 parasitic protozoan which c
3.3 MYCETOZOA 1 seq
3.3.2 MYXOGASTRIA 1 seq
3.3.2.1623 OTU 1 seq
prokMSA_id:303646 Physarum polycephalum str. CL acellular slime mold
3.5 EUGLENOZOA 9 seqs
3.5.1 KINETOPLASTIDA 8 seqs
3.5.1.1 TRYPANOSOMATIDAE 5 seqs
3.5.1.1.3 ENDOTRYPANUM 1 seq
3.5.1.1.3.1624 OTU 1 seq
prokMSA_id:303683 Endotrypanum monterogeii str. LV88 trypanosoid protist
3.5.1.1.4 HERPETOMONAS 1 seq
3.5.1.1.4.1625 OTU 1 seq
prokMSA_id:302280 Herpetomonas muscarum subsp. muscarum kinetoplastid
3.5.1.1.6 LEPTOMONAS 1 seq
3.5.1.1.6.1626 OTU 1 seq
prokMSA_id:303686 Leptomonas sp. str. L.Simpson line kinetoplastid
3.5.1.1.8 TRYPANOSOMA 2 seqs
3.5.1.1.8.1627 OTU 1 seq
prokMSA_id:302256 Trypanosoma sp. str. El-CP African trypanosome
3.5.1.1.8.1628 OTU 1 seq
prokMSA_id:303145 Trypanosoma rotatorium trypanosome
3.5.1.2 BODONIDAE 3 seqs
3.5.1.2.1629 OTU 1 seq
prokMSA_id:303682 Bodo caudatus str. J. Hajduk kinetoplastid
3.5.1.2.1630 OTU 2 seqs
prokMSA_id:300753 Cryptobia catostomi
prokMSA_id:302255 Trypanoplasma borreli str. Pg-JH trypanosome
3.5.2 EUGLENIDA 1 seq
3.5.2.1631 OTU 1 seq
prokMSA_id:302561 Euglena gracilis euglenophycean alga
3.6 ACANTHAMOEBIDAE 12 seqs
3.6.1 ACANTHAMOEBA 12 seqs
3.6.1.1633 OTU 5 seqs
prokMSA_id:300374 Acanthamoeba sp. str. KA/E1
prokMSA_id:300493 Acanthamoeba pearcei
prokMSA_id:302863 Acanthamoeba castellanii str. CDC:0981:V006 ATCC 50494 amoeb
prokMSA_id:302864 Acanthamoeba castellanii str. CDC:0184:V014 ATCC 50492 amoeb
prokMSA_id:302875 Acanthamoeba griffini str. S-7 ATCC 30731 amoeba
3.6.1.1632 OTU 1 seq
prokMSA_id:300496 Acanthamoeba polyphaga
3.6.1.1634 OTU 2 seqs
prokMSA_id:300375 Acanthamoeba sp. str. KA/E3
prokMSA_id:300495 Acanthamoeba sp. str. Liu-E1
3.6.1.1635 OTU 4 seqs
prokMSA_id:300490 Acanthamoeba pustulosa
prokMSA_id:300503 Acanthamoeba palestinensis
prokMSA_id:302225 Acanthamoeba palestinensis CCAP 1547/1 amoeba
prokMSA_id:302874 Acanthamoeba palestinensis str. Reich ATCC 30870 amoeba
3.7 CRYPTOPHYTA 4 seqs
3.7.1638 OTU 1 seq
prokMSA_id:303724 Cryptomonas phi 2-flagellae cryptomonad
3.7.1637 OTU 1 seq
prokMSA_id:303702 Pyrenomonas salina cryptomonad -- nucleomorph
3.7.1636 OTU 1 seq
prokMSA_id:302829 Goniomonas truncata chrypophyte alga
3.7.1639 OTU 1 seq
prokMSA_id:303695 Pyrenomonas salina cryptomonad
3.8 CHOANOFLAGELLIDA 2 seqs
3.8.1641 OTU 1 seq
prokMSA_id:302227 Diaphanoeca grandis choanoflagellate
3.8.1640 OTU 1 seq
prokMSA_id:302226 Acanthocoepsis unguiculata choanoflagellate
3.9 FUNGI 162 seqs
3.9.1 ASCOMYCOTA 78 seqs
3.9.1.1 ASCOMYCOTA_INCERTAE_CEDIS 1 seq
3.9.1.1.1642 OTU 1 seq
prokMSA_id:303557 unnamed organism
3.9.1.2 MITOSPORIC_ASCOMYCOTA 3 seqs
3.9.1.2.1643 OTU 1 seq
prokMSA_id:301962 Saitoella complicata IAM 12963 fungus imperfecta
3.9.1.2.1644 OTU 1 seq
prokMSA_id:302154 Geosmithia cylindrospora
3.9.1.2.1645 OTU 1 seq
prokMSA_id:300821 unnamed organism
3.9.1.4 PEZIZOMYCOTINA 47 seqs
3.9.1.4.3 PLEOSPORALES_SUBGROUP_I 3 seqs
3.9.1.4.3.3 PLEOSPORALES 2 seqs
3.9.1.4.3.3.1646 OTU 1 seq
prokMSA_id:302819 Pleospora rudis str. Univ. Cal. Berkeley fissitunicate ascom
3.9.1.4.3.3.1647 OTU 1 seq
prokMSA_id:303228 Cucurbitaria berberidis fissitunicate ascomycete fungus
3.9.1.4.3.4 DOTHIDEOMYCETES_ET_CHAETOTHYRIOMYCETES_INCERTAE_CEDIS 1 seq
3.9.1.4.3.4.1648 OTU 1 seq
prokMSA_id:302611 Aureobasidium pullulans str. Y117 mitosporic ascomycete fung
3.9.1.4.4 EUROTIOMYCETES 19 seqs
3.9.1.4.4.1 EUROTIALES 8 seqs
3.9.1.4.4.1.1650 OTU 2 seqs
prokMSA_id:300082 Aspergillus nomius
prokMSA_id:303892 Aspergillus flavus mitosporic ascomycete fungus
3.9.1.4.4.1.1649 OTU 1 seq
prokMSA_id:300090 Aspergillus wentii
3.9.1.4.4.1.1652 OTU 1 seq
prokMSA_id:302109 Paecilomyces tenuipes mitosporic ascomycete fungus
3.9.1.4.4.1.1651 OTU 1 seq
prokMSA_id:300086 Aspergillus sparsus
3.9.1.4.4.1.1653 OTU 1 seq
prokMSA_id:302721 Talaromyces flavus subsp. macrospora unitunicate ascomycete
3.9.1.4.4.1.1654 OTU 1 seq
prokMSA_id:303895 Aspergillus terreus mitosporic ascomycete fungus
3.9.1.4.4.1.1655 OTU 1 seq
prokMSA_id:302719 Monascus purpureus ATCC 16365 unitunicate ascomycete fungus
3.9.1.4.4.2 ONYGENALES 11 seqs
3.9.1.4.4.2.1657 OTU 4 seqs
prokMSA_id:301805 unnamed organism
prokMSA_id:302608 Coccidioides immitis deuteromycete fungus imperfecta
prokMSA_id:303224 Botryosphaeria ribis currant die-back fungus; fissitunicate
prokMSA_id:303556 unnamed organism
3.9.1.4.4.2.1656 OTU 1 seq
prokMSA_id:303732 Trichophyton rubrum IFO 9185 filamentous unitunicate ascomyc
3.9.1.4.4.2.1661 OTU 1 seq
prokMSA_id:302723 Ascosphaera apis str. UCB 78-018 chalk brood on honey bee la
3.9.1.4.4.2.1659 OTU 1 seq
prokMSA_id:303079 Ctenomyces serratus ascomycete fungus
3.9.1.4.4.2.1658 OTU 3 seqs
prokMSA_id:301804 unnamed organism
prokMSA_id:302717 Eremascus albus str. UCB 50-026 unitunicate ascomycete fungu
prokMSA_id:303235 Westerdykella dispersa mitosporic ascomycete fungus
3.9.1.4.4.2.1660 OTU 1 seq
prokMSA_id:303080 Gymnoascoideus petalosporus ascomycete fungus
3.9.1.4.5 LECANOROMYCETES 9 seqs
3.9.1.4.5.1662 OTU 1 seq
prokMSA_id:300827 unnamed organism
3.9.1.4.5.1664 OTU 1 seq
prokMSA_id:300643 unnamed organism
3.9.1.4.5.1663 OTU 2 seqs
prokMSA_id:300833 unnamed organism
prokMSA_id:301238 unnamed organism
3.9.1.4.5.1666 OTU 1 seq
prokMSA_id:300836 unnamed organism
3.9.1.4.5.1665 OTU 1 seq
prokMSA_id:300828 unnamed organism
3.9.1.4.5.1667 OTU 1 seq
prokMSA_id:300837 unnamed organism
3.9.1.4.5.1669 OTU 1 seq
prokMSA_id:300922 Vulpicida pinastri
3.9.1.4.5.1668 OTU 1 seq
prokMSA_id:300920 Evernia prunastri
3.9.1.4.7 PEZIZOMYCETES 1 seq
3.9.1.4.7.1670 OTU 1 seq
prokMSA_id:303372 unnamed organism
3.9.1.4.8 SORDARIOMYCETES 15 seqs
3.9.1.4.8.1 DIOPORTHALES 1 seq
3.9.1.4.8.1.1671 OTU 1 seq
prokMSA_id:302718 Leucostoma persoonii unitunicate ascomycete fungus
3.9.1.4.8.3 HYPOCREALES 2 seqs
3.9.1.4.8.3.1672 OTU 1 seq
prokMSA_id:302748 Hypomyces chrysospermus UCBH 1577345 unitunicate heterokont
3.9.1.4.8.3.1673 OTU 1 seq
prokMSA_id:301992 Hypocrea lutea unitunicate ascomycete fungus
3.9.1.4.8.4 MICROASCALES 2 seqs
3.9.1.4.8.4.1674 OTU 1 seq
prokMSA_id:302749 Microascus cirrosus UAMH 963 unitunicate ascomycete fungus
3.9.1.4.8.4.1675 OTU 1 seq
prokMSA_id:300317 Graphium penicillioides
3.9.1.4.8.5 OPHIOSTOMATALES 3 seqs
3.9.1.4.8.5.1677 OTU 1 seq
prokMSA_id:302729 Ophiostoma stenoceras str. UCB 57.013 symbiotic unitunicate
3.9.1.4.8.5.1676 OTU 1 seq
prokMSA_id:302728 Ophiostoma schenckii ATCC 14284 symbiotic unitunicate ascomy
3.9.1.4.8.5.1678 OTU 1 seq
prokMSA_id:302720 Ophiostoma ulmi ATCC 32437 Dutch elm disease fungus
3.9.1.4.8.6 SORDARIALES 4 seqs
3.9.1.4.8.6.1680 OTU 2 seqs
prokMSA_id:300055 Kionochaeta spissa
prokMSA_id:302612 Colletotrichum gloeosporioides str. UC Berkeley collection 8
3.9.1.4.8.6.1679 OTU 1 seq
prokMSA_id:303697 Podospora anserina filamentous unitunicate ascomycete fungus
3.9.1.4.8.6.1681 OTU 1 seq
prokMSA_id:302716 Chaetomium elatum unitunicate fungus
3.9.1.4.8.8 XYLARIALES 3 seqs
3.9.1.4.8.8.1682 OTU 1 seq
prokMSA_id:301011 unnamed organism
3.9.1.4.8.8.1683 OTU 1 seq
prokMSA_id:300731 unnamed organism
3.9.1.4.8.8.1684 OTU 1 seq
prokMSA_id:301659 unnamed organism
3.9.1.5 PNEUMOCYSTIDOMYCETES 1 seq
3.9.1.5.1685 OTU 1 seq
prokMSA_id:303645 Pneumocystis carinii ascomycete fungus causing pneumonia in 
3.9.1.6 SACCHAROMYCOTINA 20 seqs
3.9.1.6.2 DIPODASCACEAE 1 seq
3.9.1.6.2.1686 OTU 1 seq
prokMSA_id:300155 Yarrowia lipolytica
3.9.1.6.3 LIPPOMYCETACEAE 1 seq
3.9.1.6.3.1687 OTU 1 seq
prokMSA_id:302813 Dipodascopsis uninucleata str. UC Berkeley yeast
3.9.1.6.4 METSCHNIKOWIACEAE 1 seq
3.9.1.6.4.1688 OTU 1 seq
prokMSA_id:302602 Candida lusitaniae MUCL 29855 yeast
3.9.1.6.5 MITOSPORIC_SACCHAROMYCETALES 4 seqs
3.9.1.6.5.1689 OTU 1 seq
prokMSA_id:300165 Candida karawaiewii
3.9.1.6.5.1690 OTU 1 seq
prokMSA_id:302603 Candida tropicalis MUCL 30002 yeast
3.9.1.6.5.1691 OTU 2 seqs
prokMSA_id:302619 Candida albicans ATCC 18804 yeast which causes thrush diaper
prokMSA_id:304128 Candida dubliniensis
3.9.1.6.6 SACCHAROMYCETACEAE 13 seqs
3.9.1.6.6.1692 OTU 4 seqs
prokMSA_id:303897 Saccharomyces exiguus yeast
prokMSA_id:304132 Saccharomyces sp
prokMSA_id:304133 Saccharomyces dairensis
prokMSA_id:304287 Saccharomyces servazzii
3.9.1.6.6.1693 OTU 1 seq
prokMSA_id:300117 Saccharomyces sp
3.9.1.6.6.1694 OTU 1 seq
prokMSA_id:302604 Candida krusei MUCL 29849 yeast
3.9.1.6.6.1695 OTU 1 seq
prokMSA_id:302620 Candida kefyr ATCC 4235 yeast
3.9.1.6.6.1696 OTU 2 seqs
prokMSA_id:302151 Pichia anomala
prokMSA_id:303728 Pichia anomala MUCL 28639 yeast
3.9.1.6.6.1698 OTU 2 seqs
prokMSA_id:303727 Debaryomyces hansenii MUCL 29826 yeast
prokMSA_id:303751 Debaryomyces hansenii NRRL Y-7426 yeast
3.9.1.6.6.1697 OTU 2 seqs
prokMSA_id:303726 Dekkera bruxellensis MUCL 27700 yeast
prokMSA_id:303957 Dekkera anomala yeast
3.9.1.8 TAPHRINOMYCETES 6 seqs
3.9.1.8.1 PROTOMYCETALES 1 seq
3.9.1.8.1.1699 OTU 1 seq
prokMSA_id:302111 Protomyces macrosporus ascomycete fungus
3.9.1.8.2 TAPHRINALES 5 seqs
3.9.1.8.2.1700 OTU 5 seqs
prokMSA_id:300031 Taphrina flavorubra
prokMSA_id:300034 Taphrina mirabilis
prokMSA_id:300035 Taphrina nana
prokMSA_id:300036 Taphrina pruni
prokMSA_id:300038 Taphrina robinsoniana
3.9.2 BASIDIOMYCOTA 77 seqs
3.9.2.1 HYMENOMYCETES 64 seqs
3.9.2.1.1 DACRYMYCETALES 4 seqs
3.9.2.1.1.1701 OTU 1 seq
prokMSA_id:302296 Dacrymyces chrysospermus UC 1475112 basidiocarp fungus
3.9.2.1.1.1703 OTU 1 seq
prokMSA_id:302297 Dacrymyces stillatus str. KW 53.02 basidiocarp fungus
3.9.2.1.1.1704 OTU 1 seq
prokMSA_id:302298 Heterotextus alpinus UC 1475113 basidiomycete fungus
3.9.2.1.1.1702 OTU 1 seq
prokMSA_id:302295 Calocera cornea UC 1475111 basidiocarp fungus
3.9.2.1.2 TREMELLOMYCETIDAE 19 seqs
3.9.2.1.2.1 TREMELLALES 15 seqs
3.9.2.1.2.1.1706 OTU 1 seq
prokMSA_id:302821 Tremella moriformis str. Ken Wells UCD jelly fungus;
3.9.2.1.2.1.1705 OTU 1 seq
prokMSA_id:302820 Tremella globospora str. Ken Wells UCD jelly fungus;
3.9.2.1.2.1.1711 OTU 1 seq
prokMSA_id:300041 Fellomyces fuzhouensis
3.9.2.1.2.1.1707 OTU 1 seq
prokMSA_id:303746 Cryptococcus neoformans MUCL 30453 mitosporic basidiomycete
3.9.2.1.2.1.1708 OTU 3 seqs
prokMSA_id:300269 Cryptococcus laurentii
prokMSA_id:302030 Bullera pseudoalba JCM 5290 mitosporic basidiomycete fungus
prokMSA_id:302089 Bullera unica
3.9.2.1.2.1.1709 OTU 1 seq
prokMSA_id:303742 Bullera alba MUCL 30301 mitosporic basidiomycete fungus
3.9.2.1.2.1.1710 OTU 2 seqs
prokMSA_id:300256 Cryptococcus dimennae
prokMSA_id:302085 Bullera coprosmaensis
3.9.2.1.2.1.1714 OTU 1 seq
prokMSA_id:300275 Cryptococcus skinneri
3.9.2.1.2.1.1712 OTU 1 seq
prokMSA_id:302068 Fellomyces polyborus
3.9.2.1.2.1.1715 OTU 2 seqs
prokMSA_id:300299 Cryptococcus humicolus
prokMSA_id:303745 Trichosporon cutaneum MUCL 30308 mitosporic basidiomycete fu
3.9.2.1.2.1.1713 OTU 1 seq
prokMSA_id:302071 Sterigmatosporidium polymorphum
3.9.2.1.2.2 FILOBASIDIALES 2 seqs
3.9.2.1.2.2.1716 OTU 2 seqs
prokMSA_id:300252 Cryptococcus bhutanensis
prokMSA_id:300259 Cryptococcus friedmannii
3.9.2.1.2.3 CYSTOFILOBASIDIALES 2 seqs
3.9.2.1.2.3.1717 OTU 1 seq
prokMSA_id:300250 Cryptococcus aquaticus
3.9.2.1.2.3.1718 OTU 1 seq
prokMSA_id:300271 Cryptococcus macerans
3.9.2.1.3 HYMENOMYCETIDAE 41 seqs
3.9.2.1.3.1 AGARICALES 4 seqs
3.9.2.1.3.1.1720 OTU 1 seq
prokMSA_id:302904 symbiont of basidiomycete symbiont of Apterostigma collare
3.9.2.1.3.1.1719 OTU 1 seq
prokMSA_id:302765 Coprinus cinereus dunghill mushroom; dungheap inkcap
3.9.2.1.3.1.1721 OTU 1 seq
prokMSA_id:300583 Pleurotus tuberregium
3.9.2.1.3.1.1722 OTU 1 seq
prokMSA_id:302493 Agaricus bisporus basidiomycete fungus; cultivated mushroom
3.9.2.1.3.2 APHYLLOPHORALES 12 seqs
3.9.2.1.3.2.1724 OTU 2 seqs
prokMSA_id:300558 unnamed organism
prokMSA_id:300617 Ganoderma australe
3.9.2.1.3.2.1723 OTU 2 seqs
prokMSA_id:300626 unnamed organism
prokMSA_id:300627 unnamed organism
3.9.2.1.3.2.1726 OTU 1 seq
prokMSA_id:300625 unnamed organism
3.9.2.1.3.2.1725 OTU 2 seqs
prokMSA_id:300767 unnamed organism
prokMSA_id:303389 unnamed organism
3.9.2.1.3.2.1730 OTU 1 seq
prokMSA_id:303416 Polyporus squamosus
3.9.2.1.3.2.1727 OTU 1 seq
prokMSA_id:300759 unnamed organism
3.9.2.1.3.2.1728 OTU 1 seq
prokMSA_id:300760 Oxyporus latemarginatus
3.9.2.1.3.2.1729 OTU 1 seq
prokMSA_id:300769 Donkioporia expansa
3.9.2.1.3.2.1731 OTU 1 seq
prokMSA_id:302615 Spongipellis unicolor ATCC 26733 basidiomycete fungus
3.9.2.1.3.3 AURICULARIALES_AND_BOLETALES 5 seqs
3.9.2.1.3.3.1733 OTU 1 seq
prokMSA_id:302294 Auricularia polytricha str. KW 215.11 basidiocarp fungus
3.9.2.1.3.3.1734 OTU 1 seq
prokMSA_id:302299 Pseudohydnum gelatinosum UC 1475114 white jelly mushroom
3.9.2.1.3.3.1735 OTU 1 seq
prokMSA_id:302766 Boletus satanas str. TDB-1000 basidiocarp fungus; mushroom
3.9.2.1.3.3.1732 OTU 1 seq
prokMSA_id:302769 Xerocomus chrysenteron str. TDB-635 basidiomycete fungus;
3.9.2.1.3.3.1736 OTU 1 seq
prokMSA_id:302293 Auricularia auricula UC 1475109 basidiocarp fungus; little e
3.9.2.1.3.4 STEREALES 13 seqs
3.9.2.1.3.4.1739 OTU 1 seq
prokMSA_id:300594 unnamed organism
3.9.2.1.3.4.1737 OTU 2 seqs
prokMSA_id:300561 Polyporus squamosus
prokMSA_id:300592 unnamed organism
3.9.2.1.3.4.1740 OTU 1 seq
prokMSA_id:300770 unnamed organism
3.9.2.1.3.4.1738 OTU 1 seq
prokMSA_id:300581 unnamed organism
3.9.2.1.3.4.1744 OTU 1 seq
prokMSA_id:300780 unnamed organism
3.9.2.1.3.4.1742 OTU 1 seq
prokMSA_id:300773 Irpex lacteus
3.9.2.1.3.4.1745 OTU 1 seq
prokMSA_id:300788 Stereum ostrea
3.9.2.1.3.4.1741 OTU 1 seq
prokMSA_id:300772 unnamed organism
3.9.2.1.3.4.1743 OTU 1 seq
prokMSA_id:300775 Junghuhnia nitida
3.9.2.1.3.4.1746 OTU 1 seq
prokMSA_id:303411 unnamed organism
3.9.2.1.3.4.1748 OTU 1 seq
prokMSA_id:302610 Athelia bombacina ATCC 20629 basidiomycete fungus
3.9.2.1.3.4.1747 OTU 1 seq
prokMSA_id:303698 Schizophyllum commune split-gilled bracket; basidiomycete fu
3.9.2.1.3.5 MIXED_HYMENOMYCETIDAE 2 seqs
3.9.2.1.3.5.1750 OTU 1 seq
prokMSA_id:300610 unnamed organism
3.9.2.1.3.5.1749 OTU 1 seq
prokMSA_id:300602 unnamed organism
3.9.2.1.3.6 CERATOBASIDIALES_AND_CANTHARELLALES 5 seqs
3.9.2.1.3.6.1753 OTU 1 seq
prokMSA_id:302126 Thanatephorus cucumeris str. AG-2-2; IW; BC-10 basidiomycete
3.9.2.1.3.6.1751 OTU 2 seqs
prokMSA_id:302131 Thanatephorus cucumeris str. AG-6; HG-I; HAM1-1 basidiomycet
prokMSA_id:302764 Thanatephorus praticola str. 7Rs basidiomycete fungus; black
3.9.2.1.3.6.1754 OTU 1 seq
prokMSA_id:302138 Rhizoctonia sp. str. AG-A; isolate SN-2 mitosporic deuteromy
3.9.2.1.3.6.1752 OTU 1 seq
prokMSA_id:301783 unnamed organism
3.9.2.2 UREDINIOMYCETES 10 seqs
3.9.2.2.3 SPORIDIOBOLACEAE 9 seqs
3.9.2.2.3.1755 OTU 1 seq
prokMSA_id:301970 Rhodosporidium toruloides IAM 13469 basidiomycete fungus
3.9.2.2.3.1756 OTU 7 seqs
prokMSA_id:300183 Rhodotorula mucilaginosa
prokMSA_id:300197 Sporidiobolus ruineniae
prokMSA_id:300199 Sporidiobolus ruineniae
prokMSA_id:300200 Sporidiobolus ruineniae
prokMSA_id:303527 Rhodosporidium fluviale
prokMSA_id:303964 Rhodotorula graminis mitosporic red yeast
prokMSA_id:303966 Rhodotorula mucilaginosa mitosporic red yeast
3.9.2.2.3.1757 OTU 1 seq
prokMSA_id:303744 Sporobolomyces roseus MUCL 30251 yeast with basidiomycete
3.9.2.2.4 UREDINALES 1 seq
3.9.2.2.4.1758 OTU 1 seq
prokMSA_id:302767 Cronartium ribicola blister rust of 5-needle pines; basidiom
3.9.2.3 USTILAGINOMYCETES 3 seqs
3.9.2.3.1759 OTU 2 seqs
prokMSA_id:302817 Ustilago hordei covered smut of barley and oats basidiomycet
prokMSA_id:303749 Ustilago maydis MUCL 30488 covered smut of maize basidiomyce
3.9.2.3.1760 OTU 1 seq
prokMSA_id:302816 Tilletia caries str. D. Mills Oregon State wheat bunt
3.9.4 ZYGOMYCOTA 3 seqs
3.9.4.2 ZYGOMYCETES 3 seqs
3.9.4.2.1761 OTU 1 seq
prokMSA_id:303734 Endogone pisiformis str. CRBF #0001 zygomycete fungus
3.9.4.2.1762 OTU 1 seq
prokMSA_id:303736 Gigaspora margarita DAOM 194757 zygomycete fungus
3.9.4.2.1763 OTU 1 seq
prokMSA_id:304151 Glomus etunicatum str. INVAM 147 zygomycete fungus
3.9.5 CHYTRIDIOMYCOTA 4 seqs
3.9.5.2 CHYTRIDIALES 1 seq
3.9.5.2.1764 OTU 1 seq
prokMSA_id:302613 Chytridium confervae str. 81-1 chytrid
3.9.5.4 NEOCALLIMASTICALES 2 seqs
3.9.5.4.1765 OTU 2 seqs
prokMSA_id:302616 Neocallimastix sp. str. LM-2 anaerobic fungus; chytrid
prokMSA_id:303922 Neocallimastix frontalis anaerobic fungus; chytrid
3.9.5.5 SPIZELLOMYCETALES 1 seq
3.9.5.5.1766 OTU 1 seq
prokMSA_id:302614 Spizellomyces acuminatus str. 62A chytrid
3.10 METAZOA_AND_RELATIVES 90 seqs
3.10.2 CTENOPHORA 1 seq
3.10.2.2 CYCLOCOELA 1 seq
3.10.2.2.1767 OTU 1 seq
prokMSA_id:302229 Mnemiopsis leidyi ctenophore
3.10.3 CNIDARIA 3 seqs
3.10.3.1 ANTHOZOA 2 seqs
3.10.3.1.1769 OTU 1 seq
prokMSA_id:303676 Anemonia sulcata snake-locks sea anemone
3.10.3.1.1768 OTU 1 seq
prokMSA_id:304173 Anthopleura kurogane sea anemone
3.10.3.2 CUBOZOA 1 seq
3.10.3.2.1770 OTU 1 seq
prokMSA_id:302232 Tripedalia cystophora jellyfish
3.10.6 CHORDATA 31 seqs
3.10.6.1 CEPHALOCORDATA 1 seq
3.10.6.1.1771 OTU 1 seq
prokMSA_id:302776 Branchiostoma floridae Florida lancelet amphioxus
3.10.6.2 CRANIATA 27 seqs
3.10.6.2.1 HYPEROTRETI 2 seqs
3.10.6.2.1.1773 OTU 1 seq
prokMSA_id:302777 Eptatretus stouti Pacific hagfish
3.10.6.2.1.1772 OTU 1 seq
prokMSA_id:302779 Myxine glutinosa Atlantic hagfish
3.10.6.2.2 VERTEBRATA 25 seqs
3.10.6.2.2.1 EUTELEOSTOMI_AND_CHONDRICHTHYES 23 seqs
3.10.6.2.2.1.1774 OTU 1 seq
prokMSA_id:303627 Oryctolagus cuniculus rabbit
3.10.6.2.2.1.1775 OTU 1 seq
prokMSA_id:300904 Sphenodon punctatus
3.10.6.2.2.1.1778 OTU 1 seq
prokMSA_id:302781 Rhinobatos lentiginosus lesser sand shark
3.10.6.2.2.1.1777 OTU 1 seq
prokMSA_id:302760 Fundulus heteroclitus killifish; mummichog; Atlantic killifi
3.10.6.2.2.1.1776 OTU 1 seq
prokMSA_id:302559 Rattus norvegicus str. Sprague Dawley brown common or Norway
3.10.6.2.2.1.1779 OTU 2 seqs
prokMSA_id:302169 Rattus norvegicus brown common or Norway rat
prokMSA_id:303640 Oryctolagus cuniculus str. New Zealand rabbit
3.10.6.2.2.1.1780 OTU 12 seqs
prokMSA_id:302759 Squalus acanthias spiny dogfish
prokMSA_id:302762 Sebastolobus altivelis longspine thornyhead
prokMSA_id:303571 Cyprinus carpio common carp
prokMSA_id:304116 Amia calva bowfin
prokMSA_id:304117 Lepisosteus osseus longnose gar
prokMSA_id:304118 Polyodon spathula North American paddlefish
prokMSA_id:304119 Salmo trutta brown trout
prokMSA_id:304121 Elops hawaiiensis tenpounder fish
prokMSA_id:304122 Albula vulpes bonefish
prokMSA_id:304123 Ophichthus rex snake eel
prokMSA_id:304124 Echiophis punctifer snake eel
prokMSA_id:304126 Megalops atlanticus tarpon
3.10.6.2.2.1.1781 OTU 2 seqs
prokMSA_id:302761 Echinorhinus cookei prickly shark
prokMSA_id:302763 Notorynchus cepedianus sevengill shark
3.10.6.2.2.1.1783 OTU 1 seq
prokMSA_id:302242 Latimeria chalumnae coelacanth
3.10.6.2.2.1.1782 OTU 1 seq
prokMSA_id:302557 Homo sapiens human
3.10.6.2.2.2 HYPEROARTIA 2 seqs
3.10.6.2.2.2.1784 OTU 2 seqs
prokMSA_id:302778 Lampetra aepyptera least brook lamprey
prokMSA_id:302780 Petromyzon marinus sea lamprey; marine lamprey
3.10.6.3 UROCHORDATA 3 seqs
3.10.6.3.3 ASCIDIACEA 3 seqs
3.10.6.3.3.1785 OTU 1 seq
prokMSA_id:302782 Styela plicata sea squirt; tunicate
3.10.6.3.3.1786 OTU 1 seq
prokMSA_id:301192 Herdmania curvata
3.10.6.3.3.1787 OTU 1 seq
prokMSA_id:303679 Herdmania momus sea squirt
3.10.8 PROTOSTOMIA 14 seqs
3.10.8.6 MOLLUSCA 14 seqs
3.10.8.6.2 BIVALVIA 10 seqs
3.10.8.6.2.1789 OTU 2 seqs
prokMSA_id:302532 Chlamys hastata scallop
prokMSA_id:302533 Crassadoma gigantea scallop
3.10.8.6.2.1788 OTU 3 seqs
prokMSA_id:302235 Argopecten irradians bay scallop
prokMSA_id:302534 Mimachlamys varia scallop
prokMSA_id:302536 Pecten maximus scallop
3.10.8.6.2.1792 OTU 1 seq
prokMSA_id:303747 Crassostrea virginica eastern oyster
3.10.8.6.2.1790 OTU 1 seq
prokMSA_id:302234 Chlamys islandica scallop
3.10.8.6.2.1791 OTU 1 seq
prokMSA_id:302239 Tresus nuttali surf clam
3.10.8.6.2.1794 OTU 1 seq
prokMSA_id:302238 Mulinia lateralis surf clam
3.10.8.6.2.1793 OTU 1 seq
prokMSA_id:303680 Placopecten magellanicus str. Placo-1 sea scallop
3.10.8.6.3 GASTROPODA 4 seqs
3.10.8.6.3.1795 OTU 4 seqs
prokMSA_id:301271 unnamed organism
prokMSA_id:303782 Limicolaria kambeul pulmonate snail
prokMSA_id:304067 Helix aspersa brown garden snail
prokMSA_id:304088 unnamed organism
3.10.10 NEMATODA,_ACANTHOCEPHALA,_GASTROTRICHA,_ROTIFERA,_AND_NEMATOMORPHA 5 seqs
3.10.10.4 NEMATODA 5 seqs
3.10.10.4.1798 OTU 2 seqs
prokMSA_id:302938 Caenorhabditis remanei roundworm/nematode
prokMSA_id:302939 Caenorhabditis vulgaris roundworm/nematode
3.10.10.4.1797 OTU 2 seqs
prokMSA_id:301782 Strongyloides stercoralis
prokMSA_id:302725 Strongyloides stercoralis parasitic nematode
3.10.10.4.1796 OTU 1 seq
prokMSA_id:302823 Nematodirus battus str. Weybridge parasitic nematode
3.10.11 PLATYHELMINTHES 11 seqs
3.10.11.1 ACOELOMORPHA 1 seq
3.10.11.1.1799 OTU 1 seq
prokMSA_id:302176 Achlya bisexualis oomycete water mold
3.10.11.3 RHABDITOPHORA 10 seqs
3.10.11.3.2 NEODERMATA 10 seqs
3.10.11.3.2.1802 OTU 1 seq
prokMSA_id:302211 Calicophoron calicophorum trematode flatworm
3.10.11.3.2.1803 OTU 1 seq
prokMSA_id:302214 Gyliauchen sp. digenean flatworm
3.10.11.3.2.1804 OTU 1 seq
prokMSA_id:302215 Tetracerasta blepta digenean flatworm
3.10.11.3.2.1800 OTU 1 seq
prokMSA_id:303703 Opisthorchis viverrini liver fluke
3.10.11.3.2.1801 OTU 1 seq
prokMSA_id:304146 Schistosoma spindale str. 1659 Indian-SE Asian blood fluke;
3.10.11.3.2.1805 OTU 1 seq
prokMSA_id:302254 Heronimus mollis digenean flatworm
3.10.11.3.2.1808 OTU 2 seqs
prokMSA_id:302212 Echinostoma caproni digenean flat worm
prokMSA_id:302213 Fasciolopsis buski bile duct? fluke
3.10.11.3.2.1806 OTU 1 seq
prokMSA_id:302262 Lobatostoma manteri digenean flatworm
3.10.11.3.2.1807 OTU 1 seq
prokMSA_id:304145 Schistosoma haematobium str. Mali P1 African parasitic digen
3.10.12 PLACOZOA 2 seqs
3.10.12.1809 OTU 2 seqs
prokMSA_id:302231 Trichoplax adhaerens placozoan
prokMSA_id:304177 Trichoplax sp. placozoan
3.10.14 ARTHROPODA 21 seqs
3.10.14.1 CHELICERATA 1 seq
3.10.14.1.1 ARACHNIDA 1 seq
3.10.14.1.1.1810 OTU 1 seq
prokMSA_id:303647 Aphonopelma sp. bird spider; tarantula
3.10.14.2 TRACHEATA 13 seqs
3.10.14.2.1 HEXAPODA 13 seqs
3.10.14.2.1.1812 OTU 1 seq
prokMSA_id:302576 Drosophila melanogaster fruit fly
3.10.14.2.1.1811 OTU 1 seq
prokMSA_id:303642 Tenebrio molitor yellow mealworm; darkling beetle
3.10.14.2.1.1813 OTU 1 seq
prokMSA_id:300369 Dynastes granti
3.10.14.2.1.1814 OTU 1 seq
prokMSA_id:300456 unnamed organism
3.10.14.2.1.1815 OTU 1 seq
prokMSA_id:304013 Panorpa germanica scorpion fly
3.10.14.2.1.1816 OTU 5 seqs
prokMSA_id:302292 Aedes albopictus mosquito
prokMSA_id:303333 Toxorhynchites ambionensis mosquito
prokMSA_id:303334 Aedes punctor mosquito
prokMSA_id:303339 Culex tritaeniorhynchus mosquito
prokMSA_id:303725 Aedes albopictus forest day mosquito; Asian tiger mosquito
3.10.14.2.1.1817 OTU 3 seqs
prokMSA_id:302804 Acyrthosiphon pisum
prokMSA_id:302810 Acyrthosiphon pisum pea aphid
prokMSA_id:303072 Acyrthosiphon pisum pea aphid
3.10.14.4 CRUSTACEA 7 seqs
3.10.14.4.1 BRACHIOPODA 1 seq
3.10.14.4.1.1818 OTU 1 seq
prokMSA_id:303630 Artemia salina brine shrimp
3.10.14.4.2 MALACOSTRACA 6 seqs
3.10.14.4.2.1822 OTU 1 seq
prokMSA_id:304157 Oedignathus inermis decapod crustacean; crab
3.10.14.4.2.1819 OTU 1 seq
prokMSA_id:302758 Raninoides louisianensis gulf frog-crab
3.10.14.4.2.1821 OTU 1 seq
prokMSA_id:303112 Astacus astacus broad-fingered crayfish
3.10.14.4.2.1820 OTU 3 seqs
prokMSA_id:304182 Philyra pisum decapod crustacean
prokMSA_id:304270 Helice tridens
prokMSA_id:304271 Helice tridens
3.10.15 PORIFERA 2 seqs
3.10.15.1 CALCAREA 1 seq
3.10.15.1.1823 OTU 1 seq
prokMSA_id:302230 Scypha ciliata sponge
3.10.15.2 DEMOSPONGIAE 1 seq
3.10.15.2.1824 OTU 1 seq
prokMSA_id:302228 Microciona prolifera sponge
3.13 ALVEOLATA 63 seqs
3.13.1 APICOMPLEXA 30 seqs
3.13.1.1 PIROPLASMIDA 10 seqs
3.13.1.1.1 BABESIIDAE_SUBGROUP_I 8 seqs
3.13.1.1.1.1828 OTU 1 seq
prokMSA_id:302286 Babesia canis apicomplexan
3.13.1.1.1.1827 OTU 2 seqs
prokMSA_id:302952 Babesia odocoilei apicomplexan
prokMSA_id:304162 Babesia caballi str. Kaalplaas isolate apicomplexan
3.13.1.1.1.1826 OTU 1 seq
prokMSA_id:302285 Babesia bovis str. S apicomplexan
3.13.1.1.1.1825 OTU 1 seq
prokMSA_id:302743 Babesia bovis str. Samford apicomplexan
3.13.1.1.1.1829 OTU 1 seq
prokMSA_id:304163 Babesia equi str. OP1 isolate apicomplexan
3.13.1.1.1.1830 OTU 2 seqs
prokMSA_id:302284 Babesia bovis str. S apicomplexan
prokMSA_id:302476 Babesia bovis str. Mo7 apicomplexan
3.13.1.1.2 THEILERIIDAE 1 seq
3.13.1.1.2.1831 OTU 1 seq
prokMSA_id:302288 Theileria sp. apicomplexan
3.13.1.1.3 BABESIIDAE_SUBGROUP_II 1 seq
3.13.1.1.3.1832 OTU 1 seq
prokMSA_id:302742 Babesia rodhaini apicomplexan
3.13.1.2 HAEMOSPORIDA 13 seqs
3.13.1.2.1833 OTU 1 seq
prokMSA_id:302572 Plasmodium falciparum malaria parasite
3.13.1.2.1837 OTU 1 seq
prokMSA_id:304183 Plasmodium reichenowi apicomplexan
3.13.1.2.1836 OTU 1 seq
prokMSA_id:303580 Plasmodium vivax malaria parasite P. vivax
3.13.1.2.1835 OTU 1 seq
prokMSA_id:303649 Plasmodium lophurae apicomplexan
3.13.1.2.1834 OTU 3 seqs
prokMSA_id:302221 Plasmodium knowlesi apicomplexan
prokMSA_id:303504 Plasmodium knowlesi
prokMSA_id:303553 Plasmodium knowlesi
3.13.1.2.1838 OTU 1 seq
prokMSA_id:302243 Plasmodium mexicanum apicomplexan
3.13.1.2.1841 OTU 1 seq
prokMSA_id:302631 Plasmodium gallinaceum apicomplexan
3.13.1.2.1843 OTU 1 seq
prokMSA_id:302571 Plasmodium falciparum malaria parasite
3.13.1.2.1842 OTU 1 seq
prokMSA_id:302593 Plasmodium malariae str. Uganda-I-CDC apicomplexan
3.13.1.2.1839 OTU 1 seq
prokMSA_id:302224 Plasmodium cynomolgi str. Ceylon apicomplexan
3.13.1.2.1840 OTU 1 seq
prokMSA_id:302630 Plasmodium fragile apicomplexan
3.13.1.3 COCCIDIA 7 seqs
3.13.1.3.2 SARCOCYSTIDAE 5 seqs
3.13.1.3.2.1846 OTU 3 seqs
prokMSA_id:302812 Toxoplasma gondii str. ts-4 apicomplexan
prokMSA_id:303620 Isospora suis
prokMSA_id:303803 Toxoplasma gondii str. RH apicomplexan; virulent parasite
3.13.1.3.2.1845 OTU 1 seq
prokMSA_id:302589 Sarcocystis muris coccidian apicomplexan
3.13.1.3.2.1844 OTU 1 seq
prokMSA_id:302828 Sarcocystis fusiformis coccidian apicomplexan
3.13.1.3.3 CRYPTOSPORIDIIDAE 2 seqs
3.13.1.3.3.1847 OTU 1 seq
prokMSA_id:302281 Cryptosporidium baileyi str. AV-B1 parasitic apicomplexan
3.13.1.3.3.1848 OTU 1 seq
prokMSA_id:302282 Cryptosporidium muris parasitic apicomplexan
3.13.2 CILIOPHORA_(CILIATES) 17 seqs
3.13.2.1 CILIOPHORA_GROUP_I 2 seqs
3.13.2.1.1 SPIROTRICHEA 2 seqs
3.13.2.1.1.1850 OTU 1 seq
prokMSA_id:302730 Metopus palaeformis anaerobic ciliate
3.13.2.1.1.1849 OTU 1 seq
prokMSA_id:302785 Blepharisma americanum heterotrich ciliate
3.13.2.2 CILIOPHORA_GROUP_II 8 seqs
3.13.2.2.1 OXYTRICHIDAE_HYPOTRICHS 4 seqs
3.13.2.2.1.1851 OTU 1 seq
prokMSA_id:303672 Onychodromus quadricornutus hypotrichous ciliate
3.13.2.2.1.1852 OTU 1 seq
prokMSA_id:301159 unnamed organism
3.13.2.2.1.1853 OTU 1 seq
prokMSA_id:301190 Oxytricha sp
3.13.2.2.1.1854 OTU 1 seq
prokMSA_id:303673 Oxytricha granulifera hypotrichous ciliate
3.13.2.2.2 EUPLOTIDA_HYPOTRICHS 2 seqs
3.13.2.2.2.1855 OTU 2 seqs
prokMSA_id:301167 Euplotes aediculatus
prokMSA_id:301960 Euplotes vannus
3.13.2.2.3 LITOSTOMATEA 2 seqs
3.13.2.2.3.1857 OTU 1 seq
prokMSA_id:302432 Loxophyllum utriculariae ciliate
3.13.2.2.3.1856 OTU 1 seq
prokMSA_id:302431 Homalozoon vermiculare ciliate
3.13.2.3 MISCELLANEOUS_CILIATE_ASSEMBLAGE 2 seqs
3.13.2.3.1859 OTU 1 seq
prokMSA_id:302430 Discophrya collini ciliate
3.13.2.3.1858 OTU 1 seq
prokMSA_id:302784 Colpoda inflata ATCC 30917 hymenostome ciliate
3.13.2.4 OLIGOHYMENOPHOREA 5 seqs
3.13.2.4.1 PENICULIDA 2 seqs
3.13.2.4.1.1860 OTU 2 seqs
prokMSA_id:300849 Paramecium jenningsi
prokMSA_id:301566 Paramecium caudatum
3.13.2.4.3 SCUTICOCILLATIDA 1 seq
3.13.2.4.3.1861 OTU 1 seq
prokMSA_id:302808 Opisthonecta henneguyi ATCC 30600 ciliate
3.13.2.4.4 HYMENOSTOMATIDA 2 seqs
3.13.2.4.4.1862 OTU 1 seq
prokMSA_id:303721 Colpidium campylum hymenostome ciliate
3.13.2.4.4.1863 OTU 1 seq
prokMSA_id:302807 Glaucoma chattoni tetrahymenid ciliate
3.13.3 DINOPHYCEAE_(DINOFLAGELLATES) 12 seqs
3.13.3.1 SYMBIODINIUM_AND_OTHERS 6 seqs
3.13.3.1.1865 OTU 1 seq
prokMSA_id:302745 Symbiodinium pilosum symbiotic dinoflagellate
3.13.3.1.1867 OTU 1 seq
prokMSA_id:301209 Gymnodinium galatheanum
3.13.3.1.1864 OTU 1 seq
prokMSA_id:302744 Symbiodinium sp. str. #8 symbiotic dinoflagellate
3.13.3.1.1866 OTU 2 seqs
prokMSA_id:301609 Symbiodinium californium
prokMSA_id:302925 Symbiodinium sp. symbiotic dinoflagellate
3.13.3.1.1868 OTU 1 seq
prokMSA_id:302253 Amphidinium belauense str. 324 dinoflagellate
3.13.3.2 GONYAULACALES 4 seqs
3.13.3.2.1870 OTU 3 seqs
prokMSA_id:300513 Alexandrium tamarense
prokMSA_id:302899 Alexandrium fundyense marine dinoflagellate
prokMSA_id:303700 Alexandrium tamarense marine dinoflagellate
3.13.3.2.1869 OTU 1 seq
prokMSA_id:302590 Crypthecodinium cohnii dinoflagellate
3.13.3.3 MIXED_DINOPHYCEAE 2 seqs
3.13.3.3.1871 OTU 1 seq
prokMSA_id:302569 Prorocentrum micans str. Ehrenberg dinoflagellate
3.13.3.3.1872 OTU 1 seq
prokMSA_id:302250 Gloeodinium viscum dinoflagellate
3.13.4 HAPLOSPORIDA 2 seqs
3.13.4.1 HAPLOSPORIDIIDAE 2 seqs
3.13.4.1.1873 OTU 1 seq
prokMSA_id:303016 Haplosporidium nelsoni alveolate; parasite of oysters
3.13.4.1.1874 OTU 1 seq
prokMSA_id:303849 Haplosporidium nelsoni parasite of oysters; alveolate
3.13.5 PERKINSEA 2 seqs
3.13.5.1875 OTU 2 seqs
prokMSA_id:301010 Perkinsus marinus
prokMSA_id:302219 Perkinsus sp. apicomplexan; parasite of marine mollusc
3.14 STRAMENOPILES 17 seqs
3.14.1 BACILLARIOPHYTA 6 seqs
3.14.1.1 BACILLARIOPHYCEAE 3 seqs
3.14.1.1.1876 OTU 3 seqs
prokMSA_id:302731 Bacillaria paxillifer str. Mull Hend CCMP 261 raphid pennate
prokMSA_id:302732 Cylindrotheca closterium str. Reim and Lewin diatom
prokMSA_id:302740 Nitzschia apiculata str. Greg raphid pennate diatom
3.14.1.2 COSCINODISCOPHYCEAE 3 seqs
3.14.1.2.1877 OTU 1 seq
prokMSA_id:303881 Coscinodiscus radiatus CCMP 309 centric diatom
3.14.1.2.1878 OTU 1 seq
prokMSA_id:302735 Rhizosolenia setigera str. Brightw centric diatom
3.14.1.2.1879 OTU 1 seq
prokMSA_id:302736 Stephanopyxis broschii str. Grun CCMP 817 centric diatom
3.14.5 CHRYSOPHYCEAE 7 seqs
3.14.5.1 CHROMULINALES 2 seqs
3.14.5.1.1880 OTU 2 seqs
prokMSA_id:300987 unnamed organism
prokMSA_id:302738 Chromulina chromophila yellow-green/yellow-brown alga
3.14.5.4 HIBBERDIALES 1 seq
3.14.5.4.1881 OTU 1 seq
prokMSA_id:302737 Hibberdia magna str. Anderson CCMP 453 stramenopile
3.14.5.5 OCHROMONADALES 1 seq
3.14.5.5.1882 OTU 1 seq
prokMSA_id:302175 Ochromonas danica chrysophyte alga
3.14.5.7 SYNURALES 3 seqs
3.14.5.7.1883 OTU 1 seq
prokMSA_id:302739 Mallomonas striata yellow-green/yellow-brown alga
3.14.5.7.1885 OTU 1 seq
prokMSA_id:303520 Mallomonas striata
3.14.5.7.1884 OTU 1 seq
prokMSA_id:302741 Synura spinosa yellow-green/yellow-brown alga
3.14.10 LABRYNTHULIDA 1 seq
3.14.10.1886 OTU 1 seq
prokMSA_id:302445 Labyrinthuloides minuta slime net
3.14.14 PHAECOPHYCEAE 2 seqs
3.14.14.6 LAMINARIALES 2 seqs
3.14.14.6.1887 OTU 2 seqs
prokMSA_id:300996 unnamed organism
prokMSA_id:300997 unnamed organism
3.14.19 XANTHOPHYCEAE 1 seq
3.14.19.1888 OTU 1 seq
prokMSA_id:302601 Tribonema aequale UTEX 50 yellow-green/yellow-brown alga
3.15 RHODOPHYTA_(RED_ALGAE) 11 seqs
3.15.1 BANGIOPHYCEAE 1 seq
3.15.1.3 PORPHYRIDALES 1 seq
3.15.1.3.1889 OTU 1 seq
prokMSA_id:302446 Porphyridium aerugineum UTEX 255 red alga
3.15.2 FLORIDEOPHYCEAE 10 seqs
3.15.2.11 GRACILARIALES 6 seqs
3.15.2.11.1890 OTU 1 seq
prokMSA_id:302421 Gracilaria cornea red alga
3.15.2.11.1892 OTU 3 seqs
prokMSA_id:302423 Gracilariopsis lemaneiformis str. Vancouver Island BC red al
prokMSA_id:302597 Gracilaria lemaneiformis red alga
prokMSA_id:302598 Gracilaria lemaneiformis red alga
3.15.2.11.1891 OTU 1 seq
prokMSA_id:302426 Gracilaria chilensis str. New Zealand red alga
3.15.2.11.1893 OTU 1 seq
prokMSA_id:302387 Gracilariopsis sp. red alga
3.15.2.13 HILDENBRANDIALES 1 seq
3.15.2.13.1894 OTU 1 seq
prokMSA_id:302290 Hildenbrandia rubra red alga
3.15.2.15 PALMARIALES 3 seqs
3.15.2.15.1895 OTU 3 seqs
prokMSA_id:302395 Devaleraea ramentacea red alga
prokMSA_id:303050 Rhodothamniella floridula red alga
prokMSA_id:303678 Porphyra umbilicalis red alga; laver?
3.16 HAPTOPHYCEAE 2 seqs
3.16.2 ISOCHRYSIDALES 2 seqs
3.16.2.1896 OTU 2 seqs
prokMSA_id:301928 unnamed organism
prokMSA_id:302189 Emiliania huxleyi str. 920PML Hay and Mohler CCMP 374 flagel
3.17 VIRIDIPLANTAE 86 seqs
3.17.1 CHAETOSPHAERIDIOPHYTA 1 seq
3.17.1.1897 OTU 1 seq
prokMSA_id:301233 unnamed organism
3.17.2 CHLOROPHYTA 35 seqs
3.17.2.1 CHLOROPHYCEAE 20 seqs
3.17.2.1.2 CHLOROCOCCALES 13 seqs
3.17.2.1.2.1899 OTU 1 seq
prokMSA_id:303705 Ankistrodesmus stipitatus str. 202-5 green alga
3.17.2.1.2.1900 OTU 2 seqs
prokMSA_id:300313 Scenedesmus regularis
prokMSA_id:304052 Kermatia pupukensis green alga
3.17.2.1.2.1901 OTU 1 seq
prokMSA_id:300307 Scenedesmus acutiformis
3.17.2.1.2.1898 OTU 1 seq
prokMSA_id:300314 Scenedesmus wisconsinensis
3.17.2.1.2.1905 OTU 1 seq
prokMSA_id:302636 Characium perforatum UTEX 2104 green alga
3.17.2.1.2.1906 OTU 1 seq
prokMSA_id:302637 Characium hindakii UTEX 2098 green alga
3.17.2.1.2.1902 OTU 1 seq
prokMSA_id:302726 Characium saccatum green alga
3.17.2.1.2.1903 OTU 1 seq
prokMSA_id:302634 Chlorococcopsis minuta UTEX 776 green alga
3.17.2.1.2.1904 OTU 1 seq
prokMSA_id:302635 Pediastrum duplex green alga
3.17.2.1.2.1909 OTU 1 seq
prokMSA_id:302642 Hydrodictyon reticulatum green alga
3.17.2.1.2.1908 OTU 1 seq
prokMSA_id:302639 Parietochloris pseudoalveolaris UTEX 975 green alga
3.17.2.1.2.1907 OTU 1 seq
prokMSA_id:302638 Characium vacuolatum UTEX 2111 green alga
3.17.2.1.5 SPERMATOZOPSIS 1 seq
3.17.2.1.5.1910 OTU 1 seq
prokMSA_id:303780 Spermatozopsis similis str. M0723 green alga
3.17.2.1.6 SPHAEROPLEALES 2 seqs
3.17.2.1.6.1911 OTU 1 seq
prokMSA_id:302641 Neochloris vigenis green alga
3.17.2.1.6.1912 OTU 1 seq
prokMSA_id:302632 Neochloris aquatica UTEX 138 green alga
3.17.2.1.8 VOLVOCALES 4 seqs
3.17.2.1.8.1 CHLAMYDOMONADACEAE 2 seqs
3.17.2.1.8.1.1914 OTU 1 seq
prokMSA_id:302174 Chlamydomonas reinhardtii green alga
3.17.2.1.8.1.1913 OTU 1 seq
prokMSA_id:302774 Asteromonas gracilis green alga
3.17.2.1.8.2 DUNALIELLACEAE 1 seq
3.17.2.1.8.2.1915 OTU 1 seq
prokMSA_id:302727 Dunaliella salina green alga
3.17.2.1.8.6 VOLVOCACEAE 1 seq
3.17.2.1.8.6.1916 OTU 1 seq
prokMSA_id:303681 Volvox carteri str. f. nagariensis female strain HK10 UTEX 1
3.17.2.5 TREBOUXIOPHYCEAE 15 seqs
3.17.2.5.1 CHLORELLALES 9 seqs
3.17.2.5.1.1921 OTU 1 seq
prokMSA_id:303648 Chlorella vulgaris green alga
3.17.2.5.1.1920 OTU 1 seq
prokMSA_id:303710 Chlorella kessleri str. 211-11g green alga
3.17.2.5.1.1918 OTU 1 seq
prokMSA_id:303766 Chlorella lobophora str. 750-I green alga
3.17.2.5.1.1917 OTU 1 seq
prokMSA_id:303707 Chlorella minutissima str. C-1.1.9 green alga
3.17.2.5.1.1919 OTU 1 seq
prokMSA_id:303639 Nanochlorum eucaryotum str. Mainz 1 micro green alga
3.17.2.5.1.1923 OTU 1 seq
prokMSA_id:303768 Prototheca zopfii str. 263-1a green alga
3.17.2.5.1.1922 OTU 1 seq
prokMSA_id:300060 Chlorella minutissima
3.17.2.5.1.1924 OTU 2 seqs
prokMSA_id:300062 unnamed organism
prokMSA_id:303767 Chlorella saccharophila str. SAG 211-9a green alga
3.17.2.5.4 MICROTHAMNIALES 6 seqs
3.17.2.5.4.1926 OTU 2 seqs
prokMSA_id:304189 Myrmecia biatorellae UTEX 907 green alga
prokMSA_id:304257 Myrmecia astigmatica green alga
3.17.2.5.4.1925 OTU 1 seq
prokMSA_id:304170 Trebouxia impressa UTEX 892 green alga lichen component
3.17.2.5.4.1928 OTU 1 seq
prokMSA_id:304172 Trebouxia asymmetrica str. SAG 48.88 green alga lichen
3.17.2.5.4.1929 OTU 1 seq
prokMSA_id:302633 Friedmannia israeliensis UTEX 1181 green alga
3.17.2.5.4.1927 OTU 1 seq
prokMSA_id:304171 Trebouxia magna UTEX 902 green alga lichen
3.17.3 STREPTOPHYTA 50 seqs
3.17.3.1 CHARACEAE 3 seqs
3.17.3.1.1930 OTU 1 seq
prokMSA_id:301935 Nitella capillaris
3.17.3.1.1931 OTU 1 seq
prokMSA_id:302977 Chara hispida stonewort green alga
3.17.3.1.1932 OTU 1 seq
prokMSA_id:303003 Tolypella porteri stonewort or brittlewort
3.17.3.3 COLEOCHAETACEAE 1 seq
3.17.3.3.1933 OTU 1 seq
prokMSA_id:303804 Coleochaete scutata str. SAG 110.80 charophyte alga
3.17.3.4 EMBRYOPHYTA 44 seqs
3.17.3.4.4 TRACHEOPHYTA 44 seqs
3.17.3.4.4.5 SPERMATOPHYTA 44 seqs
3.17.3.4.4.5.1 CONIFEROPSIDA 2 seqs
3.17.3.4.4.5.1.1934 OTU 2 seqs
prokMSA_id:300678 Cupressus macrocarpa
prokMSA_id:302046 Amentotaxus formosana catkin yew
3.17.3.4.4.5.2 CYCADOPHYTA 1 seq
3.17.3.4.4.5.2.1935 OTU 1 seq
prokMSA_id:302575 Zamia pumila coontie; cycad; Seminole bread; Florida arrow r
3.17.3.4.4.5.3 GNETOPHYTA 3 seqs
3.17.3.4.4.5.3.1936 OTU 1 seq
prokMSA_id:303209 Ephedra torreyana
3.17.3.4.4.5.3.1938 OTU 1 seq
prokMSA_id:302306 Gnetum leyboldii subsp. woodsonianum gnetophyte; deciduous v
3.17.3.4.4.5.3.1937 OTU 1 seq
prokMSA_id:303210 Gnetum gnemon
3.17.3.4.4.5.4 MAGNOLIOPHYTA 38 seqs
3.17.3.4.4.5.4.1939 OTU 1 seq
prokMSA_id:303701 Alnus glutinosa str. Gaertner black common or European alder
3.17.3.4.4.5.4.1940 OTU 1 seq
prokMSA_id:302304 Asarum canadense wild ginger
3.17.3.4.4.5.4.1942 OTU 1 seq
prokMSA_id:303651 Fragaria ananassa str. genotype 8343-6 strawberry
3.17.3.4.4.5.4.1945 OTU 2 seqs
prokMSA_id:301481 unnamed organism
prokMSA_id:303425 Ehretia cymosa
3.17.3.4.4.5.4.1944 OTU 2 seqs
prokMSA_id:301325 Apium graveolens
prokMSA_id:303664 Daucus carota carrot
3.17.3.4.4.5.4.1943 OTU 3 seqs
prokMSA_id:301314 Agave ghiesbreghtii
prokMSA_id:301336 Behnia reticulata
prokMSA_id:301437 unnamed organism
3.17.3.4.4.5.4.1941 OTU 1 seq
prokMSA_id:303200 unnamed organism
3.17.3.4.4.5.4.1948 OTU 2 seqs
prokMSA_id:301955 Triticum aestivum
prokMSA_id:303629 Oryza sativa rice
3.17.3.4.4.5.4.1946 OTU 2 seqs
prokMSA_id:301337 Zygogynum sp. str. PSS-2000
prokMSA_id:302320 Drimys winteri winter's bark evergreen shrub or tree
3.17.3.4.4.5.4.1950 OTU 3 seqs
prokMSA_id:301348 Bulbine succulenta
prokMSA_id:301416 Krameria ixine
prokMSA_id:302009 Lilium formosanum
3.17.3.4.4.5.4.1947 OTU 5 seqs
prokMSA_id:301370 unnamed organism
prokMSA_id:301385 Frankenia pulverulenta
prokMSA_id:301844 Nicotiana tabacum
prokMSA_id:301845 unnamed organism
prokMSA_id:301858 unnamed organism
3.17.3.4.4.5.4.1949 OTU 2 seqs
prokMSA_id:301013 Kerria japonica
prokMSA_id:302011 Ranunculus taisanensis
3.17.3.4.4.5.4.1951 OTU 2 seqs
prokMSA_id:301350 Cabomba caroliniana
prokMSA_id:301408 Ixiolirion tataricum
3.17.3.4.4.5.4.1952 OTU 2 seqs
prokMSA_id:301456 unnamed organism
prokMSA_id:303139 Bourreria succulenta shrub or tree
3.17.3.4.4.5.4.1955 OTU 1 seq
prokMSA_id:301353 unnamed organism
3.17.3.4.4.5.4.1954 OTU 1 seq
prokMSA_id:303787 Indigofera gerardiana Fabales angiosperm
3.17.3.4.4.5.4.1953 OTU 1 seq
prokMSA_id:301854 unnamed organism
3.17.3.4.4.5.4.1956 OTU 1 seq
prokMSA_id:300653 Moquiniella rubra
3.17.3.4.4.5.4.1957 OTU 1 seq
prokMSA_id:303131 Punica granatum pomegranate
3.17.3.4.4.5.4.1958 OTU 1 seq
prokMSA_id:302508 Euphorbia pulcherrima poinsettia
3.17.3.4.4.5.4.1959 OTU 1 seq
prokMSA_id:302362 Podophyllum peltatum American mandrake; may apple
3.17.3.4.4.5.4.1960 OTU 1 seq
prokMSA_id:303188 unnamed organism
3.17.3.4.4.5.4.1961 OTU 1 seq
prokMSA_id:302179 Zea mays str. W22 maize; corn; Indian corn
3.17.3.5 KLEBSORMIDIOPHYTA 1 seq
3.17.3.5.1962 OTU 1 seq
prokMSA_id:303862 Klebsormidium flaccidum charophyte alga
3.17.3.6 ZYGNEMOPHYTA 1 seq
3.17.3.6.1963 OTU 1 seq
prokMSA_id:303822 Mougeotia scalaris green alga
3.19 CERCOZOA 8 seqs
3.19.2 CHLORARACHNIOPHYCEAE 8 seqs
3.19.2.1964 OTU 2 seqs
prokMSA_id:302824 Chlorarachnion sp. CCMP 1408 amoeboflagellate -- nucleomorph
prokMSA_id:302834 Chlorarachnion sp. CCMP 242 amoeboflagellate -- nucleomorph
3.19.2.1965 OTU 2 seqs
prokMSA_id:302832 Chlorarachnion reptans CCMP 238 amoeboflagellate -- nucleomo
prokMSA_id:303825 Chlorarachnion reptans str. Grell Tunisia amoeboflagellate -
3.19.2.1966 OTU 2 seqs
prokMSA_id:302833 Chlorarachnion reptans CCMP 238 amoeboflagellate
prokMSA_id:303826 Chlorarachnion reptans str. Grell Tunisia amoeboflagellate
3.19.2.1967 OTU 2 seqs
prokMSA_id:302825 Chlorarachnion sp. CCMP 1408 amoeboflagellate
prokMSA_id:302835 Chlorarachnion sp. CCMP 242 amoeboflagellate
3.24 DIPLOMONADIDA 3 seqs
3.24.1 GIARDIINAE 2 seqs
3.24.1.1969 OTU 1 seq
prokMSA_id:302806 Giardia muris diplomonad
3.24.1.1968 OTU 1 seq
prokMSA_id:302805 Giardia ardeae diplomonad
3.24.2 HEXAMITINAE 1 seq
3.24.2.1970 OTU 1 seq
prokMSA_id:302222 Hexamita inflata ATCC 50268 diplomonad
3.25 HETEROLOBOSEA 3 seqs
3.25.1972 OTU 1 seq
prokMSA_id:302799 Vahlkampfia lobospinosa ATCC 30298 schizopyrenid amoeba
3.25.1973 OTU 1 seq
prokMSA_id:304072 Didascalus thorntoni
3.25.1971 OTU 1 seq
prokMSA_id:302798 Tetramitus rostratus ATCC 30216 schizopyrenid amoeba