* bits
* scan 3.42
* with matrix from:
***********************************************************
***********************************************************
* scan matrix is FROM = -9, TO = 9
* region used for the scan is FROM = -9, TO = 9
****************************************************
* Paramters used by scan: 
* todo:             2147483647
* cutDNRi:         3.0
* cutUPRi:         2147483647.0
* cutDNZ:          0.0
* cutUPZ:          100.0
* cutDNP:          0.0
* cutUPP:          1.0
* fromwanted:       -9
* towanted:         9
* ways:             0
* sitedefinition:   define "Fur-M9-24" " w" "  " "  " -9.0 9.0
* (no control)
* (no control)
* (no control)
* Ri:4:1
* string: "" bits""
* (no control)
* (no control)
* (no control)
* (no control)
* .: end of print definitions
* DFi DFI: capitals mean data, scanfeatures, scaninst written
* n  normalizeRi: n: normal, s: Ri(l)-Ri(0), d: Ri(l)/Ri(0)
* -50 50  range to make the scaninst file (if made)
****************************************************
* Scan of book:
* 2006/10/26 01:15:47, 2006/10/26 01:15:47, furoligos
*  mean =  19.684195
* stdev =   4.628724
*
* lowest   Ri cutoff =   3.000000
* highest  Ri cutoff = 2147483647.000000
* lowest    Z cutoff =   0.000000
* highest   Z cutoff = 100.000000
* lowest  probability =   0.000000
* highest probability =   1.000000
* The sequences in the book will be scanned one way
* since the matrix is symmetric
*
* DEFINITION OF THE DATA COLUMNS:
* 1 piece number
* 2 piece length
* 3 piece name
* 4 piece coordinate
* 5 matrix orientation (+1 = as in book, -1 = complement)
* 6 Ri evaluation (bits per site)
* 7 Z
* 8 probability
* 9 0, meaning: not normalizing Ri
*
        1       123 yoeA       19        1   5.300838  -3.107413   0.000944 0
        1       123 yoeA       25        1  27.145110   1.611873   0.053495 0
        1       123 yoeA       28        1   4.746056  -3.227269   0.000625 0
        1       123 yoeA       31        1   7.253309  -2.685597   0.003620 0
        1       123 yoeA       37        1   9.764625  -2.143046   0.016055 0
        1       123 yoeA       43        1   4.822012  -3.210860   0.000662 0
        1       123 yoeA       85        1   4.822012  -3.210860   0.000662 0
        1       123 yoeA       91        1   9.764625  -2.143046   0.016055 0
        1       123 yoeA       97        1   7.253309  -2.685597   0.003620 0
        1       123 yoeA      100        1   4.746056  -3.227269   0.000625 0
        1       123 yoeA      103        1  27.145110   1.611873   0.053495 0
        1       123 yoeA      109        1   5.300838  -3.107413   0.000944 0
* 12 sites found in piece yoeA                                                                                                
* 105 positions evaluated
        2       123 fepD-entS       25        1   9.902602  -2.113237   0.017290 0
        2       123 fepD-entS       31        1  20.124592   0.095144   0.462100 0
        2       123 fepD-entS       37        1  12.961341  -1.452421   0.073192 0
        2       123 fepD-entS       43        1   3.551461  -3.485352   0.000246 0
        2       123 fepD-entS       85        1   3.551461  -3.485352   0.000246 0
        2       123 fepD-entS       91        1  12.961341  -1.452421   0.073192 0
        2       123 fepD-entS       97        1  20.124592   0.095144   0.462100 0
        2       123 fepD-entS      103        1   9.902602  -2.113237   0.017290 0
* 8 sites found in piece fepD-entS                                                                                           
* 105 positions evaluated
        3        99 gpmA       19        1   5.844609  -2.989935   0.001395 0
        3        99 gpmA       22        1   6.857734  -2.771058   0.002794 0
        3        99 gpmA       25        1  27.145110   1.611873   0.053495 0
        3        99 gpmA       31        1   4.283622  -3.327175   0.000439 0
        3        99 gpmA       73        1   4.283622  -3.327175   0.000439 0
        3        99 gpmA       79        1  27.145110   1.611873   0.053495 0
        3        99 gpmA       82        1   6.857734  -2.771058   0.002794 0
        3        99 gpmA       85        1   5.844609  -2.989935   0.001395 0
* 8 sites found in piece gpmA                                                                                                
* 81 positions evaluated
        4        99 ryhB       19        1   7.553426  -2.620759   0.004387 0
        4        99 ryhB       25        1  25.345133   1.223002   0.110664 0
        4        99 ryhB       31        1   7.793233  -2.568950   0.005100 0
        4        99 ryhB       73        1   7.793233  -2.568950   0.005100 0
        4        99 ryhB       79        1  25.345133   1.223002   0.110664 0
        4        99 ryhB       85        1   7.553426  -2.620759   0.004387 0
* 6 sites found in piece ryhB                                                                                                
* 81 positions evaluated
        5       111 fhuA       25        1  10.562841  -1.970598   0.024385 0
        5       111 fhuA       31        1  19.862049   0.038424   0.484675 0
        5       111 fhuA       37        1   5.359731  -3.094690   0.000985 0
        5       111 fhuA       79        1   5.359731  -3.094690   0.000985 0
        5       111 fhuA       85        1  19.862049   0.038424   0.484675 0
        5       111 fhuA       91        1  10.562841  -1.970598   0.024385 0
* 6 sites found in piece fhuA                                                                                                
* 93 positions evaluated
        6        99 nohA       19        1  12.689814  -1.511082   0.065384 0
        6        99 nohA       25        1  20.836119   0.248864   0.401733 0
        6        99 nohA       79        1  20.836119   0.248864   0.401733 0
        6        99 nohA       85        1  12.689814  -1.511082   0.065384 0
* 4 sites found in piece nohA                                                                                                
* 81 positions evaluated
        7       111 oppA       25        1   9.564414  -2.186300   0.014397 0
        7       111 oppA       31        1  21.163066   0.319499   0.374674 0
        7       111 oppA       85        1  21.163066   0.319499   0.374674 0
        7       111 oppA       91        1   9.564414  -2.186300   0.014397 0
* 4 sites found in piece oppA                                                                                                
* 93 positions evaluated
        8        99 gspC       22        1   3.519678  -3.492219   0.000240 0
        8        99 gspC       28        1  14.304473  -1.162247   0.122568 0
        8        99 gspC       76        1  14.304473  -1.162247   0.122568 0
        8        99 gspC       82        1   3.519678  -3.492219   0.000240 0
* 4 sites found in piece gspC                                                                                                
* 81 positions evaluated
        9       105 yhaU       22        1   8.567583  -2.401658   0.008160 0
        9       105 yhaU       25        1  11.041513  -1.867185   0.030938 0
        9       105 yhaU       28        1  14.266622  -1.170425   0.120915 0
        9       105 yhaU       31        1   6.570278  -2.833160   0.002305 0
        9       105 yhaU       79        1   6.570278  -2.833160   0.002305 0
        9       105 yhaU       82        1  14.266622  -1.170425   0.120915 0
        9       105 yhaU       85        1  11.041513  -1.867185   0.030938 0
        9       105 yhaU       88        1   8.567583  -2.401658   0.008160 0
* 8 sites found in piece yhaU                                                                                                
* 87 positions evaluated
       10       111 yahA       25        1  14.330667  -1.156588   0.123720 0
       10       111 yahA       31        1  16.588191  -0.668868   0.251790 0
       10       111 yahA       85        1  16.588191  -0.668868   0.251790 0
       10       111 yahA       91        1  14.330667  -1.156588   0.123720 0
* 4 sites found in piece yahA                                                                                                
* 93 positions evaluated
       11        99 fadD       19        1   3.779920  -3.435996   0.000295 0
       11        99 fadD       25        1  22.961620   0.708062   0.239453 0
       11        99 fadD       79        1  22.961620   0.708062   0.239453 0
       11        99 fadD       85        1   3.779920  -3.435996   0.000295 0
* 4 sites found in piece fadD                                                                                                
* 81 positions evaluated
* 0 sites found in piece ygaC                                                                                                
* 81 positions evaluated
       13       107 exbB       24        1  18.887751  -0.172066   0.431693 0
       13       107 exbB       36        1   3.205488  -3.560097   0.000185 0
       13       107 exbB       76        1   3.205488  -3.560097   0.000185 0
       13       107 exbB       88        1  18.887751  -0.172066   0.431693 0
* 4 sites found in piece exbB                                                                                                
* 89 positions evaluated
* 0 sites found in piece exbD                                                                                                
* 89 positions evaluated
       15       109 fhuF       16        1  22.090320   0.519825   0.301593 0
       15       109 fhuF       33        1  22.386711   0.583858   0.279658 0
       15       109 fhuF       39        1  15.947184  -0.807352   0.209732 0
       15       109 fhuF       75        1  15.947184  -0.807352   0.209732 0
       15       109 fhuF       81        1  22.386711   0.583858   0.279658 0
       15       109 fhuF       98        1  22.090320   0.519825   0.301593 0
* 6 sites found in piece fhuF                                                                                                
* 91 positions evaluated
*
* 78 sites found in this book in
* 1331 total positions evaluated
* 4.0928926370 effective Rfrequency (bits per site)