2007-07-02 19:16  Ed Larty <lartey@hepr0.physics.tamu.edu>

	* setup/packages-R1.26-tmp:

	# new tmp file for next release

2007-07-02 18:22  kordosky

	* CVSROOT/: check_access, modules:

	add a couple new notes in minospub

2007-07-02 17:26  niki

	* NCUtils/Extrapolation/NCExtrapolationNS.h:

	The .h file

2007-07-02 17:26  niki

	* NCUtils/Extrapolation/NCExtrapolationNS.cxx:

	 Now it is compiling.

2007-07-02 16:24  niki

	* NCUtils/Extrapolation/NCExtrapolationNS.cxx:

	Code for Beam Matrix extrapolation for CC-NC measurement. Code is completelly functional
	and tested in Mad ramework. Needs some more work , I guess, for NCUtils framework

2007-07-02 16:24  niki

	* NCUtils/Extrapolation/NCExtrapolationNS.h:

	Update extrapolation code. Code is completelly functional and tested in Mad framework, needs some
	more work I guess in NCUtils

2007-07-02 15:55  rustem

	* PhysicsNtuple/: kNNAlg/FillkNN.cxx, macros/make_mc.C:



	Change "new TFile" to "TFile::Open()" to allow in the future reading of
	ROOT files from url. Currently, TWebFile can not open training file over
	htpp due to some problem with reading the directory info.

2007-07-02 15:47  raufer

	* NCUtils/Extrapolation/NCExtrapolationRS.cxx:

	Initialize static member sFit. This makes the Minuit happy.

2007-07-02 14:35  Robert Hatcher <rhatcher@fnal.gov>

	* CVSROOT/framework.list:

	Liz finally buckles under and asks to be removed.

2007-07-02 13:51  rustem

	* PhysicsNtuple/macros/: make_data.C, make_mc.C:



	Twoo macros that do it all.

2007-07-02 13:50  rustem

	* PhysicsNtuple/Config/: FiducialCutR050.txt, FiducialCutR075.txt,
	  FiducialCutR080.txt, FiducialCutR100.txt, PlotBasic.xml,
	  PlotBeam.xml, PlotEvent.xml, PlotEventPid.xml, PlotMuonId.xml,
	  PlotReson.xml, PlotShower.xml, PlotTrack.xml, PlotTrackGeom.xml,
	  PlotTruth.xml, PlotVertex.xml, PlotkNN.xml:



	Configuration files for Plot and Select algorithms.

2007-07-02 13:49  rustem

	* PhysicsNtuple/macros/: fill.C, fill_mc.C,
	  save_simple_events_mc.C, select_antineu.C, study_dedx.C,
	  study_pid.C:



	Remove obsolete macros.

2007-07-02 13:48  rustem

	* PhysicsNtuple/: Plot/PlotReson.cxx, Plot/PlotReson.h,
	  Plot/PlotTruth.cxx, Plot/PlotTruth.h, Select/SelectCount.cxx,
	  Select/SelectCount.h:



	Three new algoritms:

	1) PlotTruth and PlotReson plot variables from Truth class,

	2) SelectCount counts number of events that pass and/or fail series of
	cuts, breaking down by truth categories if truth information if available.
	It also plots event variables for a cut.

2007-07-02 13:44  rustem

	* PhysicsNtuple/: AlgCaddy.h, Factory.h:



	Add two template classes:

	1) Factory<T> is templated factory that creates objects on demand, if an
	object is registred through REGISTER_ANP_OBJECT macro.

	2) AlgCaddy<T> is containter template that simplifies algorithm handling
	by RunAlgEvent, RunALgSnarl, RunAlgStore and SelectCount algorithms.

2007-07-02 13:41  rustem

	* PhysicsNtuple/: AlgFactory.cxx, AlgFactory.h,
	  Fill/FillEventPid.cxx, Fill/FillEventPid.h,
	  kNNAlg/FillEventLike.cxx, kNNAlg/FillEventLike.h:



	Remove obsolete factory class AlgFactory. Move old algorithms FillEventPid
	and FillEventLike to Contrib/rustem/PidStudy.

2007-07-02 13:38  rustem

	* PhysicsNtuple/: AlgEvent.h, AlgSnarl.h, AlgStore.h, DataItem.h,
	  Default.cxx, Default.h, Event.cxx, Event.h, FluxInfo.cxx,
	  FluxInfo.h, Hist1d.h, LinkDef.h, Particle.cxx, Particle.h,
	  RecoNu.cxx, RecoNu.h, Record.cxx, Record.h, RunAlgEvent.cxx,
	  RunAlgEvent.h, RunAlgSnarl.cxx, RunAlgSnarl.h, RunAlgStore.cxx,
	  RunAlgStore.h, RunFinder.cxx, RunFinder.h, Shower.h, Strip.h,
	  Track.cxx, Track.h, Truth.cxx, Truth.h, TruthReco.h,
	  Config/FiducialCut.txt, Draw/DrawSnarl.cxx,
	  Draw/EventDisplay.cxx, Draw/EventDisplay.h, Fill/FillMuonId.cxx,
	  Fill/FillMuonId.h, Fill/FillTrackGeom.cxx, Plot/PlotBasic.h,
	  Plot/PlotBeam.cxx, Plot/PlotData.cxx, Plot/PlotData.h,
	  Plot/PlotEff.cxx, Plot/PlotEff.h, Plot/PlotEvent.cxx,
	  Plot/PlotEvent.h, Plot/PlotPur.cxx, Plot/PlotPur.h,
	  Plot/PlotShower.cxx, Plot/PlotTrack.cxx, Plot/PlotTrackGeom.cxx,
	  Save/SaveRecord.cxx, Save/SaveSimpleEvent.cxx,
	  Save/SaveSimpleEvent.h, Save/SimpleEvent.cxx, Save/SimpleEvent.h,
	  Select/SelectAntiNeutrino.cxx, Select/SelectAntiNeutrino.h,
	  Select/SelectBeam.cxx, Select/SelectBeam.h,
	  Select/SelectFiducial.cxx, Select/SelectNeutrino.cxx,
	  Select/SelectNeutrino.h, Select/SelectSpill.cxx,
	  Store/FillBeam.cxx, Store/FillDataModule.cxx,
	  Store/FillDataModule.h, Store/FillEvent.cxx, Store/FillEvent.h,
	  Store/FillHeader.cxx, Store/FillHeader.h, Store/FillShower.cxx,
	  Store/FillShower.h, Store/FillStrip.cxx, Store/FillTrack.cxx,
	  Store/FillTrack.h, Store/FillTruth.cxx, Store/FillTruth.h,
	  Store/Interface.cxx, Store/Interface.h, kNNAlg/FillkNN.cxx,
	  kNNAlg/FillkNN.h:



	A major update to PhysicsNtuple package. This is an internal code change,
	so all external users that access PhysicsNtuple through Anp::Interface
	class should not see any changes in the functionality.

	Reorganized many data structures:

	1) Truth stores beam weights and FillTruth fills these beam weights,
	2) Clean up RecoNu and associated FillEvent algorithm,
	3) Few small changes to other data classes.

	Algorithm changes:

	1) All algorithms now use Factory template. Old AlgFactory code with
	specific types has been depreciated,
	2) Significant upgrade for all Plot
	algorithms: create histograms through HistMan, add many new histograms,
	improve existing histograms,
	3) New SelectCount algorithm that counts
	events that pass a cut in a series of many cuts. SelectCount can plot
	events as they pass or fail each cut,
	4) Some other minor changes.

2007-07-02 11:36  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/driver/set_local_config.pm:

	Deterime the experiment name by checking for config/.experiment and
	--expt=

	Use it to load libs_and_builds/<expt>-<site>.config

2007-07-02 11:36  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/driver/rsd.pm:

	Move intro print out to set_local_config so that it appears even if no
	comand passed to RSD and it simply print help.

2007-07-02 11:36  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/driver/initialise_globals.pm:

	Define $SYS::EXPT

2007-07-02 11:36  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/driver/: help.txt,
	  parse_command.pm:

	Add --expt=

2007-07-02 11:36  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/driver/: cmd_launch.pm,
	  job_make_jdl_file.pm, replace_sw_tag.pm:

	Use experiment name ($SYS::EXPT) to define VO name.

2007-07-02 11:36  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/: RemoteSoftwareDeployment/config/.cvsignore,
	  RemoteSoftwareDeployment/config/example.config,
	  RemoteSoftwareDeployment/config/minos-oxford_t2_ui.config,
	  RemoteSoftwareDeployment/config/minos-ral_t1_ui.config,
	  RemoteSoftwareDeployment/config/minos-ral_t1_wn.config,
	  RemoteSoftwareDeployment/config/minos-ral_t2_wn.config,
	  RemoteSoftwareDeployment/doc/rsd.html, docs/ChangeLog:

	Introduce a configuration system to broaden support to other
	experiments

2007-07-02 11:36  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/: DataCacheManager/init.pm,
	  DataCacheManager/docs/dcm.html,
	  Scripts/maintenance/version_number:

	Update version number.

2007-07-02 03:48  tjyang

	* Contrib/tjy/hadvalidation/README.txt:

	add readme

2007-07-02 03:33  tjyang

	* Contrib/tjy/hadvalidation/: HadAna/HadAna.cxx, HadAna/HadAna.h,
	  HadAna/run_comp.C, data/KNO.dat, data/allen1a_10.dat,
	  data/allen1a_12.dat, data/allen1a_2.dat, data/allen1a_4.dat,
	  data/allen1a_6.dat, data/allen1a_8.dat,
	  data/nc51a_539_fig3_hiW.dat, data/nc51a_539_fig3_loW.dat,
	  data/nc51a_539_fig4.dat, data/npb181_385_fig1_nch_W.dat,
	  data/npb181_385_fig2a.dat, data/npb214_369_fig5_pim.dat,
	  data/npb214_369_fig5_pip.dat, data/npb214_369_fig7_pim.dat,
	  data/npb214_369_fig7_pip.dat, data/npb223_269_D_n.dat,
	  data/npb223_269_fig8_vp.dat, data/npb223_269_fig9_vp_10_14.dat,
	  data/npb223_269_fig9_vp_3_4.dat, data/npb223_269_fig9_vp_4_5.dat,
	  data/npb223_269_fig9_vp_5_7.dat,
	  data/npb223_269_fig9_vp_7_10.dat, data/npb223_269_nB_W.dat,
	  data/npb223_269_nF_W.dat, data/npb223_269_n_W.dat,
	  data/pauli_10.dat, data/pauli_12.dat, data/pauli_2.dat,
	  data/pauli_4.dat, data/pauli_6.dat, data/pauli_8.dat,
	  data/pl124b_543_fig3_highy_cutw.dat,
	  data/pl124b_543_fig3_highy_nocutw.dat,
	  data/pl124b_543_fig3_lowy_cutw.dat,
	  data/pl124b_543_fig3_lowy_nocutw.dat, data/prd17_1_fig12.dat,
	  data/prd17_fig14_E1.dat, data/prd17_fig14_E2.dat,
	  data/prd17_fig14_E3.dat, data/prd17_w.dat, data/prd19_1_fig1.dat,
	  data/prd19_1_fig11_xf1.dat, data/prd19_1_fig11_xf2.dat,
	  data/prd19_1_fig11_xf3.dat, data/prd19_1_fig11_xf4.dat,
	  data/prd19_1_fig12_a.dat, data/prd19_1_fig5_a.dat,
	  data/prd19_1_fig5_b.dat, data/prd19_1_fig6_neg.dat,
	  data/prd19_1_fig6_pos.dat, data/prd27_47_fig4_vn.dat,
	  data/prd27_47_fig4_vp.dat, data/prd27_47_fig5_D_W_vn.dat,
	  data/prd27_47_fig5_D_W_vp.dat, data/prd27_47_fig5_D_n_vn.dat,
	  data/prd27_47_fig5_D_n_vp.dat, data/prd27_47_fig6_vn.dat,
	  data/prd27_47_fig6_vn_10_15.dat, data/prd27_47_fig6_vn_1_3.dat,
	  data/prd27_47_fig6_vn_3_5.dat, data/prd27_47_fig6_vn_5_7.dat,
	  data/prd27_47_fig6_vn_7_10.dat, data/prd27_47_fig6_vp.dat,
	  data/prd27_47_fig6_vp_10_15.dat, data/prd27_47_fig6_vp_1_3.dat,
	  data/prd27_47_fig6_vp_3_5.dat, data/prd27_47_fig6_vp_5_7.dat,
	  data/prd27_47_fig6_vp_7_10.dat, data/prd27_47_fig7_vn_cur.dat,
	  data/prd27_47_fig7_vn_tar.dat, data/prd27_47_fig7_vp_cur.dat,
	  data/prd27_47_fig7_vp_tar.dat, data/prd27_47_fig8_vn_neg_cur.dat,
	  data/prd27_47_fig8_vn_neg_tar.dat,
	  data/prd27_47_fig8_vn_pos_cur.dat,
	  data/prd27_47_fig8_vn_pos_tar.dat,
	  data/prd27_47_fig8_vp_neg_cur.dat,
	  data/prd27_47_fig8_vp_neg_tar.dat,
	  data/prd27_47_fig8_vp_pos_cur.dat,
	  data/prd27_47_fig8_vp_pos_tar.dat, data/proton_xf.dat,
	  data/sn41_963_fig2_vA.dat, data/sn41_963_fig4_vA.dat,
	  data/z_pim_hiq2.dat, data/z_pim_loq2.dat, data/z_pip_hiq2.dat,
	  data/z_pip_loq2.dat, data/zpc24_119_fig4_vn_B.dat,
	  data/zpc24_119_fig4_vn_F.dat, data/zpc24_119_fig4_vp_B.dat,
	  data/zpc24_119_fig4_vp_F.dat, data/zpc24_119_fig8_vd_neg.dat,
	  data/zpc24_119_fig8_vd_pos.dat, data/zpc24_119_fig9a_z1.dat,
	  data/zpc24_119_fig9a_z2.dat, data/zpc24_119_fig9a_z3.dat,
	  data/zpc24_119_fig9a_z4.dat, data/zpc24_119_fig9a_z5.dat,
	  data/zpc24_119_fig9a_z6.dat, data/zpc24_119_fig9a_z7.dat,
	  data/zpc24_119_vn.dat, data/zpc27_239_fig2_hiW.dat,
	  data/zpc27_239_fig2_loW.dat, data/zpc27_239_fig3_vD_B.dat,
	  data/zpc27_239_fig3_vD_F.dat, data/zpc27_239_fig4_EMC.dat,
	  data/zpc27_239_fig4_vD.dat, data/zpc27_239_fig4_vNe.dat,
	  data/zpc27_239_fig6_vn_hiW.dat, data/zpc27_239_fig6_vn_loW.dat,
	  data/zpc27_239_fig6_vp_hiW.dat, data/zpc27_239_fig6_vp_loW.dat,
	  data/zpc40_231_fig13_pi0.dat, data/zpc40_231_fig17_vW1.dat,
	  data/zpc40_231_fig17_vW2.dat, data/zpc40_231_fig17_vW3.dat,
	  hadfile/Makefile, hadfile/hadfile.F, hadfile/print_stdhep.F,
	  hadfile/set_parameters.F:

	hadronization validation plots

2007-06-30 04:49  George Irwin <gmieg@slac.stanford.edu>

	* WebDocs/enstore2xrootd.html:

	Add mention of pnfs catalog used for files undeclared to SAM

2007-06-30 01:16  Sue Kasahara <schubert@hep.umn.edu>

	* CVSROOT/check_access:


	Add Brian Bock to AstroUtil author list

2007-06-29 16:25  vahle

	* FDSpecWErrs/: FDSpecWErrs.cxx, FDSpecWErrs.h, reallyrunData.C,
	  newfitcode/DrawStuff.C, newfitcode/FNData.cxx,
	  newfitcode/FNData.h, newfitcode/FNFit.cxx, newfitcode/FNFit.h,
	  newfitcode/justMakeTrees.C, newfitcode/justRunIT.C,
	  newfitcode/runFNFit.C:

	final version of prediction code

2007-06-29 13:17  rodriges

	* PhotonTransport/: ChannelNoiseRates.cxx, ChannelNoiseRates.h,
	  LinkDef.h, PhotonConfiguration.cxx, PhotonDefaultModel.cxx,
	  PhotonDefaultModel.h:

	New FD noise simulation. See docDB 2862 for details.
	Requires the new CHANNELNOISERATES table

2007-06-29 13:14  asousa

	* CVSROOT/check_access:

	Giving Phil. R. write privileges to PhotonTransport.

2007-06-29 12:00  Nick West <n.west1@physics.oxford.ac.uk>

	* DatabaseMaintenance/scripts/make_priming_set.pm:

	Add CHANNELNOISERATES

2007-06-29 11:31  Robert Hatcher <rhatcher@fnal.gov>

	* Rotorooter/send_to_roto.C:

	turn off GenFakeRec - breaks the round-trip circle.

2007-06-29 11:30  Robert Hatcher <rhatcher@fnal.gov>

	* Rotorooter/RotoClientModule.cxx:

	Make GenFakeRec (fake run beg/end records) _off_ by default.

2007-06-29 09:44  Nick West <n.west1@physics.oxford.ac.uk>

	*
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/build_config_table.dat:

	Costas: GENIE needs root v5-15-08

2007-06-29 07:58  Nick West <n.west1@physics.oxford.ac.uk>

	*
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/install_root.sh:

	Cosmetic improvement: Use the new RSD_SUP_LIB_xxx_DIR env. vars (which
	point to the true directories) rather than the libraries within
	$RSD_TOP_DIR which are now only soft links to the true directories.

	Prepare setup scripts in setup_library/

2007-06-29 07:58  Nick West <n.west1@physics.oxford.ac.uk>

	*
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/install_pythia.sh:

	For consistency switch to bash for of export command.

2007-06-29 07:58  Nick West <n.west1@physics.oxford.ac.uk>

	*
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/install_cernlib.sh:

	If libpacklib_noshift.a exists and is not a soft link, use it in place
	of libpacklib_shift.a and libpacklib_noshift.a (so that neugen3
	doesn"t fail with unresolved rfio_* symbols).

	For consistency switch to bash form of export command.

2007-06-29 07:58  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/libs_and_builds/:
	  assemble_neugen3.sh, install_neugen3.sh:

	Add support for neugen3

2007-06-29 05:26  Robert Hatcher <rhatcher@fnal.gov>

	* Rotorooter/send_to_roto.C:

	job script using RotoClientModule to send what it sees to the rotorooter.

2007-06-28 20:09  Robert Hatcher <rhatcher@fnal.gov>

	* WebDocs/WebDocs.html:

	Break things down into a few more categories (FNAL systems, Online).
	Add links to cluster general notes, user 'assignments', ganglia and
	local scratch disk usage report.

2007-06-28 20:07  Robert Hatcher <rhatcher@fnal.gov>

	* WebDocs/GNUmakefile:

	Do the 'fixperms' processing during the 'bin' stage rather than upfront
	at the 'codegen' stage ... just so the important work gets done first.

2007-06-28 20:06  Robert Hatcher <rhatcher@fnal.gov>

	* WebDocs/fixperm:

	speed up permission 'fixing' by only chmod'ing files that need it
	(are _not_ yet set) not just all the files that satisfy the grep conditions.

2007-06-28 18:32  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/libs_and_builds/build_lund.sh:

	Report error and stop if cannot get requested version of pythia from thep.lu.se/~torbjorn

2007-06-28 18:09  hartnell

	* CalDetTracker/CDAnalysis.cxx:


	Added sigcor distributions for each plane for Jenny to cross check
	against.

2007-06-28 16:05  tjyang

	* MeuCal/macros/nearValidate/mResponseDrift.C:

	save cDriftDecalTwiceMC canvas

2007-06-28 13:38  tinti

	* Contrib/tinti/readme.txt:

	placeholder

2007-06-28 13:10  rodriges

	* Contrib/Documents/CalibBoxOpenDoc/May2007/: calibPosition.tex,
	  cedarCalB.eps, cedarDriftCorrections.eps:

	Update the Cedar vs CalB section (bug fix in code makes the plot look sensible now).

2007-06-27 17:18  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/libs_and_builds/:
	  build_lund.sh, install_pythia.sh:

	Use Robert"s build_lund.sh with a very thin RSD wrapper.

2007-06-27 17:18  Nick West <n.west1@physics.oxford.ac.uk>

	*
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/install_minossoft.sh:

	Add version-less library soft link. Add soft link to setup scripts in  setup_library/

2007-06-27 17:18  Nick West <n.west1@physics.oxford.ac.uk>

	*
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/install_cernlib.sh:

	Generate setup scripts.

2007-06-27 17:18  Nick West <n.west1@physics.oxford.ac.uk>

	*
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/assemble_pythia.sh:

	Strip out all Sue"s hard work and create a dummy pythia tar file
	All the heavily lifting moves to install_pythia.sh

2007-06-27 17:18  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/: doc/rsd.html,
	  driver/cmd_install.pm:

	Add new install environmental variable: RSD_LIB_BUILD_DIR

2007-06-27 16:57  hartnell

	* NtupleUtils/NuCuts.cxx:


	Change the cut value for Andy's pid.

2007-06-27 12:31  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/docs/ChangeLog:

	Document update
	Add global option --build_config_table=<file>,
	Add setup_library/ to remote directory structure

2007-06-27 12:31  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/driver/lss_connect_library.pm:

	Use ";" as delimiter between supporting libraries in build context,

2007-06-27 12:31  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/driver/initialise_globals.pm:

	Use env. var. RSD_OXFORD_TEST to select test setup.

2007-06-27 12:31  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/driver/: help.txt,
	  parse_command.pm:

	Add global option --build_config_table=<file>

2007-06-27 12:31  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/driver/cmd_install.pm:

	Create setup_library/

2007-06-27 12:31  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/doc/rsd.html:

	Reorganise.
	  Rename Implementation Notes -> Developer Manual
	  Move sections into more logical order

	Add    Build Configurations and Software Stacks
	       Minimising Library Builds
	       Recommendation for setup scripts

	Add warning about soft links created during library installation

	Add global option --build_config_table=<file>

2007-06-27 12:31  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/: DataCacheManager/init.pm,
	  DataCacheManager/docs/dcm.html,
	  Scripts/maintenance/version_number:

	Update version number to V00-07-01.

2007-06-27 04:41  arms

	* Contrib/rhatcher/gminos_jobs/gminos_jobs.py:

	One (hopefully) last update for setting gminos to take stdhep file input. If the stdhep filename format is [nf]xxxxRRRR_SSSS.cosmic.hepevt.dat, then override the run and subrun to RRRR and SSSS; this is the current arbitrary naming convention.

2007-06-26 22:36  arms

	* Contrib/rhatcher/gminos_jobs/gminos_jobs.py:

	Add commandline switch to gminos_jobs for setting the stdhep filename; if the filename is of the form [nf]RRRR_SSSS.cosmic.hepevt.dat, then also overrides the run number to RRRR and subrun number to SSSS.

2007-06-26 22:26  arms

	* Contrib/rhatcher/gminos_jobs/: run_umn.sh, umn_bulk_copy.sh:

	Update UMN farm scripts. run_umn.sh updated to include a check on the disk space where files are staged locally

2007-06-26 15:36  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/docs/: admin_group.html, jobs_tutorial.html:

	Switch to the VO name minos.vo.gridpp.ac.uk, move all FNAL VO related stuff to one section

2007-06-26 10:12  Nick West <n.west1@physics.oxford.ac.uk>

	* HWDB/util.php:

	Whoops, left DB set to offline_dev; revert it Jeff's test setup

2007-06-26 10:08  Nick West <n.west1@physics.oxford.ac.uk>

	* HWDB/util.php:

	vld_create: Create VLDs with TASK = 0 (not -1)

2007-06-25 13:11  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/libs_and_builds/:
	  assemble_cernlib.sh, build_config_table.dat, install_cernlib.sh:

	Add CERNlib to the fold

2007-06-25 10:44  Minos CVS group account.  Do not commit from here!

	* Contrib/Documents/CalibBoxOpenDoc/May2007/calibPosition.tex:

	Alter some numbers to match what was given in Ely. Make various other cleanups
	and clarifications

2007-06-25 09:24  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/docs/ChangeLog:

	Major RSD update:
	  Complete restructuring of the remote directory structure.
	  Library sharing
	  Simplistic platform support
	  Software surveying

2007-06-25 09:24  Nick West <n.west1@physics.oxford.ac.uk>

	*
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/install_minossoft.sh:

	Respond to revised remote directory structure.

	Get bfield from separate application

	Use new site names to set up DB cascade.

2007-06-25 09:24  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/:
	  RemoteSoftwareDeployment/libs_and_builds/install_GENIE.sh,
	  RemoteSoftwareDeployment/libs_and_builds/install_GridTools.sh,
	  RemoteSoftwareDeployment/libs_and_builds/install_MyODBC.sh,
	  RemoteSoftwareDeployment/libs_and_builds/install_bfieldmap.sh,
	  RemoteSoftwareDeployment/libs_and_builds/install_clhep.sh,
	  RemoteSoftwareDeployment/libs_and_builds/install_dcap.sh,
	  RemoteSoftwareDeployment/libs_and_builds/install_external_library.sh,
	  RemoteSoftwareDeployment/libs_and_builds/install_geant4.sh,
	  RemoteSoftwareDeployment/libs_and_builds/install_geant4_vmc.sh,
	  RemoteSoftwareDeployment/libs_and_builds/install_libsigc++.sh,
	  RemoteSoftwareDeployment/libs_and_builds/install_log4cpp.sh,
	  RemoteSoftwareDeployment/libs_and_builds/install_mysql.sh,
	  RemoteSoftwareDeployment/libs_and_builds/install_pythia.sh,
	  RemoteSoftwareDeployment/libs_and_builds/install_root.sh,
	  RemoteSoftwareDeployment/libs_and_builds/install_unixODBC.sh,
	  Scripts/setup/locate_and_run_setup_wn.sh,
	  Scripts/setup/setup_wn.sh:

	Respond to revised remote directory structure.

2007-06-25 09:24  Nick West <n.west1@physics.oxford.ac.uk>

	*
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/build_config_table.dat:

	Factor out bfieldmap into its own application BFieldMap

2007-06-25 09:24  Nick West <n.west1@physics.oxford.ac.uk>

	*
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/assemble_minossoft.sh:

	Check that validation is set up for the release.

2007-06-25 09:24  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/libs_and_builds/:
	  assemble_goodbye_world.sh, assemble_hello_world.sh,
	  goodbye_world.cpp, install_goodbye_world.sh,
	  install_hello_world.sh:

	Update test application and libraries to check out library sharing.

2007-06-25 09:24  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/driver/terminate_install.pm:

	Collect library install logs directly rather have caller pass in
	a complete list.

	Call survey_and_clean_up

2007-06-25 09:24  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/driver/survey_and_clean_up.pm:

	Survey the installed software and removed unused libraries.

2007-06-25 09:23  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/driver/run_install_script.pm:

	Use get_lib_info.

2007-06-25 09:23  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/driver/rsd.pm:

	Move introductory print out.

	Update routine list.

2007-06-25 09:23  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/driver/report.pm:

	Allow an array of messages to be given passed in.

2007-06-25 09:23  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/driver/read_file_pipe.pm:

	Utility to read a pipe or a file and return the results.

2007-06-25 09:23  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/driver/manage_soft_links.pm:

	Adapt to new remote directory structure.

2007-06-25 09:23  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/driver/:
	  lss_connect_library.pm, lss_harvest_build.pm,
	  lss_is_lib_soft_link.pm, lss_process_file.pm,
	  lss_share_library.pm:

	LSS (Library Sharing System) routines.

2007-06-25 09:23  Nick West <n.west1@physics.oxford.ac.uk>

	*
	  GridTools/RemoteSoftwareDeployment/driver/install_supporting_applications.pm:

	Remove obsolete routine; appliactions don"t nest, they share
	libraries.

2007-06-25 09:23  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/driver/initialise_globals.pm:

	Describe the LSS (Library Sharing System) variables.

	Set up $SYS::HOST_PLATFORM

2007-06-25 09:23  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/driver/help.txt:

	Add --platform=<platform> Required platform.

2007-06-25 09:23  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/driver/help.pm:

	Move introductory print out.

2007-06-25 09:23  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/driver/get_lib_list.pm:

	Strip off platform suffix before looking up application ID in table.

	If application includes other applications include their libraries but
	drop duplicates.

2007-06-25 09:23  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/driver/get_lib_info.pm:

	Utility to get library related information.

2007-06-25 09:23  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/driver/cmd_test.pm:

	Add get_lib_list test.

2007-06-25 09:23  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/driver/cmd_remove.pm:

	Check requested platform matches host and abort if not.

	Call survey_and_clean_up

2007-06-25 09:23  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/driver/cmd_install.pm:

	Check requested platform matches host and abort if not.

	Adapt to new remote directory structure, and manage library sharing.

	Set up environmental variables for supporting libraries.

2007-06-25 09:22  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/doc/rsd.html:

	Complete restructuring of the remote directory structure.
	Applications no longer own libraries but instead share them (via soft
	links).  Libraries are stored in a separate area and managed
	automatically:-

	1) New versions are created on demand if no version exists that is
	   built in the right context (platform + supporting libraries)

	2) Old versions are removed when no application links to them.

	Applications are no longer nested.  Instead, when one application
	includes another it simply receives links to all the libraries of the
	other. This simplifies the writing of installation scripts: each
	library has access to the version numbers and locations of all
	libraries on which it depends.

	Introduce a very simplistic platform support so that one software disk
	can hold the build products of multiple platforms for example SL3 and
	SL4.

	At the end of an installation (or removal) job, RSD performs an
	overall survey, listing all applications and the libraries they use
	and listing all libraries and the applications that use them.  Also
	gives total space occupied by the software and the space remaining on
	disk.

2007-06-25 09:22  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/: DataCacheManager/init.pm,
	  DataCacheManager/docs/dcm.html,
	  Scripts/maintenance/version_number:

	Update version number.

2007-06-25 07:44  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/docs/data_lfc_lcg.html:

	Fix typo: it's LCG File Catalog not LHC File Catalog

2007-06-25 07:43  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/docs/links.html:

	Add links to Dirac

2007-06-25 07:42  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/docs/contacts.html:

	Add Stuart Paterson

2007-06-25 05:36  asousa

	* NCUtils/Extrapolation/: NCExtrapolationRS.cxx,
	  NCExtrapolationRS.h:

	Fleshing out AddEvent method to fill Data, MC and SKZP error histograms when running the RS extrapolation.

2007-06-25 00:28  Sue Kasahara <schubert@hep.umn.edu>

	* ParticleTransportSim/test/: GNUmakefile, PTSimValidate.cxx,
	  PTSimValidate.h, TestPTSim.cc:


	Start of test program to validate methods unencumbered by statistical
	fluctuations.

2007-06-25 00:10  Sue Kasahara <schubert@hep.umn.edu>

	* MCNtuple/NtpMCStdHep.cxx:


	Remove setiosflags(ios::fixed) when printing stdhep vertex/momentum
	so that scientific notation is used as appropriate.

2007-06-24 21:03  Sue Kasahara <schubert@hep.umn.edu>

	* GeoGeometry/GeoGeometry.cxx:


	Add new mediums "GREENSTONE" and "NEARBEDROCK" to be used for modeling
	of far detector rock and near detector rock respectively.  These
	are defined as below.
	Use of the new mediums is not yet activated to facilitate validation
	against GMINOS, but will be activated pre-Eggplant.

	     // *************** GREENSTONE *****************
	     // GREENSTONE to be used for far detector rock.
	     // Composition from K. Ruddick's compilation of data from regional rock
	     // samples (c. 1970).  Private communication of 6/21/2007.
	     // Density from K. Ruddick's PDK Note 435, 1990.
	     TGeoMixture *mat12 = new TGeoMixture("GREENSTONE",13, 2.8);
	     mat12->SetUniqueID(matId);
	     mat12->DefineElement( 0,15.999, 8,0.4586);  // oxygen,    45.86%
	     mat12->DefineElement( 1,28.086,14,0.2370);  // silicon,   23.70%
	     mat12->DefineElement( 2,55.845,26,0.0856);  // iron,       8.56%
	     mat12->DefineElement( 3,26.982,13,0.0797);  // aluminum,   7.97%
	     mat12->DefineElement( 4,40.078,20,0.0641);  // calcium,    6.41%
	     mat12->DefineElement( 5,24.305,12,0.0395);  // magnesium,  3.95%
	     mat12->DefineElement( 6,22.990,11,0.0190);  // sodium,     1.90%
	     mat12->DefineElement( 7,47.867,22,0.0064);  // titanium,   0.64%
	     mat12->DefineElement( 8,39.098,19,0.0034);  // potassium,  0.34%
	     mat12->DefineElement( 9, 1.008, 1,0.0026);  // hydrogen,   0.26%
	     mat12->DefineElement(10,12.011, 6,0.0020);  // carbon,     0.20%
	     mat12->DefineElement(11,54.938,25,0.0015);  // manganese,  0.15%
	     mat12->DefineElement(12,30.974,15,0.0006);  // phosphorus, 0.06%

	     new TGeoMedium("GREENSTONE",medId++,matId,0,0,0,tMaxFd,steMax,deeMax,
	                                                     epsil,stMin);

	     matId++;

	     // *************** NEARBEDROCK *****************
	     // NEARBEDROCK to be used for near detector bedrock.
	     // Composition (CaMg(CO_3)_2 with 8.0% moisture content by weight)
	     // and density from S. Kasahara's NuMI note 2777 and references therein.

	     TGeoMixture *mat13 = new TGeoMixture("NEARBEDROCK",5, 2.43);
	     mat13->SetUniqueID(matId);
	     mat13->DefineElement( 0,15.999, 8,0.550);  // oxygen,    55.0%
	     mat13->DefineElement( 1,40.078,20,0.200);  // calcium,   20.0%
	     mat13->DefineElement( 2,24.305,12,0.121);  // magnesium, 12.1%
	     mat13->DefineElement( 3,12.011, 6,0.120);  // carbon,    12.0%
	     mat13->DefineElement( 4, 1.008, 1,0.009);  // hydrogen,   0.9%

	     new TGeoMedium("NEARBEDROCK",medId++,matId,0,0,0,tMaxFd,steMax,deeMax,
	                                                     epsil,stMin);

	     matId++;

2007-06-24 14:12  ishi

	* Contrib/ishi/2DFit/: FDFit.cxx, NDFit.cxx, NDFit.h:

	NDFit.cxx updated for new PAN's.

2007-06-23 01:29  cjames

	* ControlRoomSoftware/ShiftersGuide/OtherStuff.tex:

	new chapter, uses portions of old Glossary, JIRA

2007-06-23 01:28  cjames

	* ControlRoomSoftware/ShiftersGuide/BadThings.tex:

	new chapter, uses portions of old computing, controltools, shifting

2007-06-23 01:26  cjames

	* ControlRoomSoftware/ShiftersGuide/: RunControl.tex, DCS.tex,
	  EventDisplay.tex, BeamMonitoring.tex:

	update to posted version now in use

2007-06-23 01:24  cjames

	* ControlRoomSoftware/ShiftersGuide/MinosCR.tex:

	new chapter, uses portions of old computing, controltools, shifting

2007-06-23 01:23  cjames

	* ControlRoomSoftware/ShiftersGuide/: Introduction.tex, CRL.tex,
	  OnlineMonitoring.tex:

	update to posted version now in use

2007-06-23 01:22  cjames

	* ControlRoomSoftware/ShiftersGuide/ShiftersGuide.tex:

	New Chapters, new latex commands

2007-06-23 01:16  cjames

	* ControlRoomSoftware/ShiftersGuide/StatusPages.tex:

	remove old chapters, material incorporated into new

2007-06-23 01:13  cjames

	* ControlRoomSoftware/ShiftersGuide/: Glossary.tex, JIRA.tex,
	  Shifting.tex:

	remove old chapters, material incorporated into new

2007-06-23 01:10  cjames

	* ControlRoomSoftware/ShiftersGuide/: Computing.tex,
	  ControlTools.tex:

	remove old chapters

2007-06-23 00:45  cjames

	* ControlRoomSoftware/CRLForms/DcsCheckListNear.htm:

	updated

2007-06-22 23:51  tjyang

	* MiniBooNEAna/: MNtpModule.cxx, macros/makemntp.C:

	update energy corrections

2007-06-22 21:10  cjames

	* ControlRoomSoftware/ShiftersGuide/figures/: d44step2.jpg,
	  d44step1.jpg, d44step3.jpg, minos_acnet.jpg:

	add new figures

2007-06-22 21:07  cjames

	* ControlRoomSoftware/ShiftersGuide/figures/: CRLsearch2.jpg,
	  CRLsearch3.jpg, CRLsearch.jpg, jasdisplay.jpg, jasdevstatus.jpg,
	  jasdevdetail.jpg, numimodes.jpg, acnetToolbar.jpg,
	  acnetEpage.jpg, acnetE38Mons3.jpg, acnetE38Horn5.jpg:

	add new figures

2007-06-22 21:04  cjames

	* ControlRoomSoftware/ShiftersGuide/figures/: crlayout.jpg,
	  kdetoolbar.jpg, KdeMenu.jpg, CRL_Login.jpg, CRLquickpick.jpg,
	  CRLentries.jpg, CRLtopic.jpg, CRLforms.jpg, CRLnewentry.jpg,
	  CRLbrowse.jpg, CRLannotate.jpg, Ksnap.jpg, KsnapSave.jpg,
	  tvmon.jpg:

	add new figures

2007-06-22 21:04  cjames

	*
	  ControlRoomSoftware/ShiftersGuide/figures/jas_status_20050925_1.png:

	remove unused figures

2007-06-22 21:01  cjames

	* ControlRoomSoftware/ShiftersGuide/figures/: cr_pc-layout.png,
	  jas_dialog_20050925_1.png, jas_dialog_20050925_2.png,
	  jas_dialog_e1_090905.png, jas_display_20050925_2.png,
	  jas_display_20050925_1.png:

	remove unused figures

2007-06-22 20:58  cjames

	* ControlRoomSoftware/ShiftersGuide/figures/crlweb_topic.png:

	delete unused figs

2007-06-22 20:50  boehm

	* NueAna/: AnalysisInfoAna.cxx, NueHeader.h,
	  Module/NueBeamMonModule.cxx, Module/NueModule.cxx:

	Adding Beamtype to the NueHeader
	moving the beamtype information around into nuebeamModule
	updating the algorithm list for using rustem's pid

2007-06-22 20:49  cjames

	* ControlRoomSoftware/ShiftersGuide/figures/: crlweb_entry.png,
	  crlweb_index.png, crlweb_search.png:

	update figs

2007-06-22 20:49  kreymer

	* CVSROOT/check_access:

	controlroom_grp - added cjames and removed avva

2007-06-22 17:21  asousa

	* CVSROOT/check_access:

	Giving Lauren write permissions to AnalysisNtuples and NCUtils packages.

2007-06-22 17:19  asousa

	* CVSROOT/framework.list:

	Giving Lauren the dubious privilege of being spammed by minoscvs.

2007-06-22 14:37  boehm

	* Conventions/ReleaseType.cxx:

	Adjusting MakeReleaseType to specifically set R1.24.1 run code to ReleaseType::R1_24_1 instead of just Cedar.

2007-06-22 12:38  rjn

	* DataUtil/: EnergyCorrections.cxx, macros/testEnergyCorrection.C:

	Hack for Release Type problem. The auto generated release types do not pick up the reconstruction sub versions at present

2007-06-22 11:12  vahle

	* Mad/MadTVAnalysis.cxx:

	Updating beam spot center, fixed evttimemin so that it is relative to the time in ntpHeader

2007-06-22 05:36  asousa

	* NCUtils/Extrapolation/: NCExtrapolationRS.cxx,
	  NCExtrapolationRS.h:

	Some changes so that code can handle properly any number of input beams.

2007-06-21 21:07  George Irwin <gmieg@slac.stanford.edu>

	* NCUtils/Extrapolation/NCExtrapolationRS.cxx:

	Add ' #include "TMinuit.h" ' so routine will compile.

2007-06-21 20:55  ishi

	* Contrib/ishi/Plots/: NDPlots.cxx, NDPlots.h:

	Distributions with SKZP beam weights (no detector parameters) are added.

2007-06-21 05:41  asousa

	* NCUtils/Extrapolation/: NCExtrapolationRS.cxx,
	  NCExtrapolationRS.h:

	Some more code porting. Added Minuit fitting function.

2007-06-21 04:58  Nick West <n.west1@physics.oxford.ac.uk>

	* WebDocs/SnapshotRel.html:

	Add S07-06-20-R1-25

2007-06-21 01:10  George Irwin <gmieg@slac.stanford.edu>

	* setup/packages-S07-06-20-R1-25:

	First commit

2007-06-21 00:33  petyt

	* Mad/MadQuantities.cxx:

	added "using namespace EnergyCorrections" to MadQuantities.cxx. This seems to be now required to enable Mad to compile with development minossoft

2007-06-20 22:12  asousa

	* NCUtils/: Extrapolation/LinkDef.h, Extrapolation/MCEvent.h,
	  Extrapolation/NCExtrapolationRS.cxx,
	  Extrapolation/NCExtrapolationRS.h, data/FluxErrorHistos-14.root,
	  data/FluxErrorHistos14.root:

	Committing current status of porting the NearFit code to NCUtils. Adding necessary auxiliary files. Code not ready for prime-time but getting there.

2007-06-19 21:38  petyt

	* Mad/: MadAbID.cxx, MadPIDAnalysis.cxx, MadQuantities.cxx:

	Small change to ND fidvol definition to reflect beam spot centre from latest survey measurements:

	OLD: x=1.4885m, y=0.1397m
	NEW: x=1.4828m, y=0.2384m

	made this change in MadQuantities, MadPIDAnalysis, MadAbID classes

	small change to void MadPIDAnalysis::ConfigureRoID(std::string tag)
	to reflect recent updates to PhysicsNtuple class. Related to this, the library libTinyXml.so is no longer required, and so has been removed from Mad/macros/LoadLibs.C

2007-06-19 19:31  Sue Kasahara <schubert@hep.umn.edu>

	* GeoGeometry/GeoGeometry.cxx:


	Back out change to set the geometry's vldrange according to:
	1)The input vldcontext detector type.
	2)The input vldcontext simflag type.
	3)A range of time delimited by the database tables used to build the
	  geometry.
	to again allow the VldRange class to set the detector type
	and simflag type used as an an AND of the database tables'
	detector/simflag validity.

	This was originally committed to handle the case of building a
	realistic geometry using Data tables from database in place of MC
	during PTSim simulation using SimFlagAssociation, e.g.:

	DbiTableProxyRegistry& dbiCfg = DbiTableProxyRegistry::Instance();
	dbiCfg.Set("SimFlagAssociation:MC = 'Data,MC'");
	dbiCfg.Set("SimFlagAssociation:Reroot = 'Data,Reroot'");
	dbiCfg.Update();

	but Nick has updated DbiValidityRecBuilder to handle this generically
	so that special handling in GeoGeometry is no longer necessary.

2007-06-19 18:03  Sue Kasahara <schubert@hep.umn.edu>

	* ParticleTransportSim/macro/: PTSim_g4config.in, PTSim_g4libs.C,
	  PTSim_testG3.C, PTSim_testG4.C:


	Shift library load further up the chain in PTSim_g4libs.C to match
	new requirement.  Other tweaks to make scripts match.

2007-06-18 20:39  tjyang

	* MeuCal/macros/makeSummaryTreeSam.C:

	fix a bug

2007-06-16 21:57  kordosky

	* Contrib/kordosky/neugen_4vec/response_model.F:

	mike's response model, v1

2007-06-16 21:41  rustem

	* BeamData/python/main/beam_data_files_monitor.py:



	Add option to supply pid lock file from command line argument: file name is a first command line parameter.
	If the name is not supplied then default to monitor-process.pid.

2007-06-16 19:52  rodriges

	* Contrib/Documents/CalibBoxOpenDoc/May2007/: calibPosition.tex,
	  mcShowerGain10Percent.eps, shwSystFDNoise.eps,
	  shwSystFDRandom.eps, shwSystNDNoise.eps, shwSystNDRandom.eps:

	Add plots for random calibration errors and noise. Need more discussion of these, plus numbers taken as error

2007-06-15 16:27  ishi

	* Contrib/ishi/2DFit/NDFit.h:

	It was not compiled...

2007-06-15 16:23  arms

	* Contrib/rhatcher/gminos_jobs/: run_umn.sh, setup_umn_bundle.sh:

	Update to daikon_02 in the UMN setup, add a flag to remove the fz_gaf file if reroot is done locally

2007-06-15 16:20  ishi

	* Contrib/ishi/2DFit/: NDFit.cxx, NDFit.h, RunNDFit.C:

	Switch to Data/MC, W/WO SKZP

2007-06-15 15:43  ishi

	* Contrib/ishi/2DFit/NDFit.cxx:

	Comments added.

2007-06-15 15:41  ishi

	* Contrib/ishi/2DFit/: FDFit.cxx, NDFit.cxx, NDFit.h, RunNDFit.C:

	7 beam fit including pMHE.

2007-06-15 03:54  tjyang

	* MeuCal/macros/makeSummaryTree.pl:

	update script

2007-06-14 23:12  rodriges

	* Contrib/Documents/CalibBoxOpenDoc/May2007/: calibPosition.tex,
	  shwSystFDGainDown5pc.eps, shwSystFDGainUp5pc.eps,
	  shwSystNDGainDown10pc.eps, shwSystNDGainDown5pc.eps,
	  shwSystNDGainUp10pc.eps, shwSystNDGainUp5pc.eps:

	Add initial description of systematics study. Gain is done completely; random
	miscalibration and noise are awaiting plots.

2007-06-14 22:58  Nathaniel Tagg <n.tagg1@physics.ox.ac.uk>

	* Contrib/Documents/CalibBoxOpenDoc/May2007/: calibPosition.tex,
	  shwlin_vs_reco_energy.eps:

	Add plot on linearity correction vs shower energy (figure 7 in this draft).
	---Nathaniel

2007-06-14 22:25  Robert Hatcher <rhatcher@fnal.gov>

	* UgliGeometry/UgliDbiTables.cxx:

	Compile, then commit.

2007-06-14 21:00  Nick West <n.west1@physics.oxford.ac.uk>

	* DatabaseInterface/DbiValidityRecBuilder.cxx:

	If the associated SimFlag is different to the original request make
	sure that all the DbiValidityRec are valid for the request.

2007-06-14 15:16  Robert Hatcher <rhatcher@fnal.gov>

	* BField/: BField.cxx, BField.h, BfldLoanPool.cxx, BfldLoanPool.h:

	Flesh out BField::ResetVldContext() so that it now can make use of
	DcsUser/CoilTools for determining the coil current direction.  This is
	now on by default, but can be changed via UseDCSCoilDir setting (either
	the BField "Set" method or via BfldLoanPool default setting).
	ResetVldContext() will also adjust underlying BfldCache (ie. geometry and
	BfldDbiPlaneMap table) if necessary.

2007-06-14 15:05  Robert Hatcher <rhatcher@fnal.gov>

	* DcsUser/CoilTools.cxx:

	In case of no DBI entries for BfldDbiCoilState/Dcs_Mag_Near (for Far/Near)
	when querying a SimFlag::kMC context, just assume IsOK() and not IsReverse();
	for kData it remains not IsOK() and not IsReverse().

2007-06-14 14:49  Robert Hatcher <rhatcher@fnal.gov>

	* UgliGeometry/: UgliGeomHandle.cxx, UgliGeomHandle.h:

	Add ResetVldContext() method as an alternative to reassigning handles.
	That is rather than:
	   UgliGeomHandle ugh(vldc_1);
	   ...
	   ugh = UgliGeomHandle(vldc_2);
	one can:
	   UgliGeomHandle ugh(vldc_1);
	   ...
	   ugh.ResetVldContext(vldc_2);
	This convention brings it more in line with some similar use cases.

2007-06-14 14:45  Robert Hatcher <rhatcher@fnal.gov>

	* UgliGeometry/UgliDbiTables.cxx:

	If there the number of UgliDbiGeometry rows was != 1, print what the
	VldContext was.

2007-06-14 14:43  Robert Hatcher <rhatcher@fnal.gov>

	* GeoGeometry/GeoGeometry.cxx:

	Make constructing a "geometry" for a null (ie. Detector::kUnknown) VldContext
	possible -- not all that useful as a geometry, but as a placeholder in
	case a UgliGeomHandle (or BField) needs to be constructed before the true
	context is known -- without too much noise or a fatal error.

	When calling Print() only print volume info if the option string is not
	empty.  Also print the number of references to this geometry.

2007-06-14 12:34  Nathaniel Tagg <n.tagg1@physics.ox.ac.uk>

	* Contrib/tagg/Kinema/: KinTuple.h, MyMad.cxx, MyMad.h:

	Add some q&d calibration stuff.

2007-06-13 22:19  Brian Rebel <brebel@fnal.gov>

	* NCUtils/: Extraction/NCExtraction.cxx, Extraction/NCExtraction.h,
	  Extraction/NCExtractionAS.cxx, Extraction/NCExtractionDP.cxx,
	  Extraction/NCExtractionKA.cxx, Extraction/NCExtractionKAD.cxx,
	  Extraction/NCExtractionNS.cxx, Extraction/NCExtractionRO.cxx,
	  Extraction/NCExtractionRPann.cxx, Extraction/NCExtractionTO.cxx,
	  Extraction/NCExtractionTR.cxx, Extraction/NCExtractionTRann.cxx,
	  Extrapolation/NCExtrapolation.cxx,
	  Extrapolation/NCExtrapolationDP.cxx,
	  Extrapolation/NCExtrapolationModule.cxx,
	  Extrapolation/NCExtrapolationModule.h, macros/ncccSeparationNC.C,
	  macros/nearFarExtrapolation.C:


	add all my mods into cvs

2007-06-12 03:48  Sue Kasahara <schubert@hep.umn.edu>

	* ParticleTransportSim/PTSimStack.cxx:


	Bug fix to new implementation of particle sort at end of
	event.

2007-06-11 20:23  ishi

	* Contrib/ishi/2DFit/: FDFit.cxx, FDFit.h, RunFDFit.C:

	New cuts implemented to FD fit code.

2007-06-11 16:30  ishi

	* Contrib/ishi/2DFit/: NDFit.cxx, NDFit.h, RunNDFit.C:

	New cuts and pre-shutdown data (ND).

2007-06-11 02:25  Sue Kasahara <schubert@hep.umn.edu>

	* ParticleTransportSim/PTSimApplication.cxx:


	Bug fix to storage of currentpath.

2007-06-10 19:29  kordosky

	* Mad/MadMKAnalysis.cxx, Mad/macros/LoadLibs.C,
	  Mad/macros/MakePanMK.C, NeugenInterface/inuke_rw.cxx,
	  NeugenInterface/inuke_rw.h,
	  NeugenInterface/macros/test_fill_stdhep.C:

	reweight to change uniform density to WS

2007-06-10 19:15  Nick West <n.west1@physics.oxford.ac.uk>

	* setup/: setup_minossoft_csf.csh, setup_minossoft_csf.sh:

	setup_ui.csh and set_routines.sh ow in subdir setup

2007-06-10 19:12  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/Scripts/docs/Scripts.html,
	  setup/setup_minossoft_oxford.csh:

	setup_ui.sh now in subdir setup

2007-06-10 18:04  Nick West <n.west1@physics.oxford.ac.uk>

	*
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/assemble_GridTools.sh:

	Restructure Scripts/ into:-
	  setup/        All aspects of job environment setup.
	  job/          Job scripts
	  maintenance/  Management of GridTools itself.

2007-06-10 17:50  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/docs/ChangeLog:

	Updates to DCM and Scripts.

2007-06-10 17:50  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/DataCacheManager/: sei_search_catalogue.pm,
	  docs/dcm.html, docs/help_summary.txt:

	Support --remote_se not_nfs

2007-06-10 17:50  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/DataCacheManager/minos/sam_execute_cmd.pm:

	Use is_data_file() rather than identify_file() when checking
	samTranslateDimensions.  Some file names have a null first component
	returned by identify_file causing a valid file to be ignore.

2007-06-10 17:50  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/: DataCacheManager/init.pm,
	  RemoteSoftwareDeployment/doc/rsd.html,
	  RemoteSoftwareDeployment/driver/initialise_globals.pm:

	Update version number.

2007-06-10 17:50  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/DataCacheManager/frs_retrieve_all_files.pm:

	If relative directory supplied with --local_dir, make it absolute so
	that DCM returns files with absolute directory paths that still work
	even if current directory subsequently changed.

2007-06-10 17:50  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/DataCacheManager/frs_put_all_files.pm:

	Fix typos in comments and print out.

2007-06-10 17:34  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/Scripts/locate_and_run_setup_wn.sh,
	  GridTools/Scripts/propagate_version_number.sh,
	  GridTools/Scripts/run_get_site_info.perl,
	  GridTools/Scripts/set_routines.sh,
	  GridTools/Scripts/set_sh_env.sh,
	  GridTools/Scripts/set_shell_env.pm,
	  GridTools/Scripts/setup_ui.csh, GridTools/Scripts/setup_ui.sh,
	  GridTools/Scripts/setup_wn.sh, GridTools/Scripts/version_number,
	  GridTools/Scripts/maintenance/propagate_version_number.sh,
	  GridTools/Scripts/maintenance/version_number,
	  GridTools/Scripts/setup/locate_and_run_setup_wn.sh,
	  GridTools/Scripts/setup/run_get_site_info.perl,
	  GridTools/Scripts/setup/set_routines.sh,
	  GridTools/Scripts/setup/set_sh_env.sh,
	  GridTools/Scripts/setup/set_shell_env.pm,
	  GridTools/Scripts/setup/setup_ui.csh,
	  GridTools/Scripts/setup/setup_ui.sh,
	  GridTools/Scripts/setup/setup_wn.sh, setup/locate_grid_tools.sh:

	Restructure Scripts/ into:-

	  setup/        All aspects of job environment setup.
	  job/          Job scripts
	  maintenance/  Management of GridTools itself.

2007-06-10 17:34  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/Scripts/jobs/demo_loon_job.sh:

	First example of Loon GRID job.

2007-06-10 17:34  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/Scripts/docs/Scripts.html:

	Add section: Running a Loon Job on a Worker Node

2007-06-10 16:59  vahle

	* FDSpecWErrs/: FDSpecWErrs.cxx, FDSpecWErrs.h, reallyrunData.C,
	  newfitcode/FNData.cxx, newfitcode/FNData.h, newfitcode/FNFit.cxx,
	  newfitcode/FNFit.h, newfitcode/justMakeTrees.C,
	  newfitcode/justRunIT.C, newfitcode/runFNFit.C:

	updated f/n code for summer 2007 box opening

2007-06-10 01:13  Brian Rebel <brebel@fnal.gov>

	* NCUtils/: Extraction/NCExtraction.cxx, Extraction/NCExtraction.h,
	  Extraction/NCExtractionAS.cxx, Extraction/NCExtractionKA.cxx,
	  Extraction/NCExtractionKAD.cxx, Extraction/NCExtractionNS.cxx,
	  Extraction/NCExtractionRO.cxx, Extraction/NCExtractionRPann.cxx,
	  Extraction/NCExtractionTO.cxx,
	  Extrapolation/NCExtrapolationDP.cxx, macros/ncccSeparationNC.C,
	  macros/nearFarExtrapolation.C:


	make sure to include skzp weight when filling far nominal mc histograms

	add method to show selected and background spectra for extraction methods

2007-06-10 00:14  Sue Kasahara <schubert@hep.umn.edu>

	*
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/build_config_table.dat:


	New geant4_vmc application version R2.2-build_0

2007-06-09 23:49  tjyang

	* NueAna/FracVarAna.cxx:

	protect against very large value

2007-06-09 00:36  tjyang

	* NueAna/: FracVar.cxx, FracVar.h, FracVarAna.cxx:

	add more shower variables

2007-06-09 00:12  Brian Rebel <brebel@fnal.gov>

	* NCUtils/Extraction/NCExtraction.cxx:

	forgot one change

2007-06-09 00:04  Brian Rebel <brebel@fnal.gov>

	* NCUtils/: NCAnalysisUtils.cxx, Cuts/NCAnalysisCuts.cxx,
	  Extraction/NCExtraction.cxx, Extraction/NCExtraction.h,
	  Extraction/NCExtractionAS.cxx, Extraction/NCExtractionKA.cxx,
	  Extraction/NCExtractionKAD.cxx, Extraction/NCExtractionNS.cxx,
	  Extraction/NCExtractionRO.cxx, Extraction/NCExtractionRPann.cxx,
	  Extraction/NCExtractionTO.cxx, Extraction/NCExtractionTRann.cxx,
	  Extrapolation/NCBeam.cxx, Extrapolation/NCExtrapolation.cxx,
	  Extrapolation/NCExtrapolationDP.cxx,
	  Extrapolation/NCExtrapolationDP.h,
	  Extrapolation/NCExtrapolationModule.cxx,
	  macros/ncccSeparationNC.C, macros/nearFarExtrapolation.C:

	more debugging of dp extrapolation

	add another histogram to the extraction objects to look at energy dependence

	add RPann and AS cuts to NCAnalysisCuts::GetExtractionCut method

2007-06-08 17:04  Minos CVS group account.  Do not commit from here!

	* Contrib/boehm/AnaNuePlot/HistManager.cxx:

	minor bug fix

2007-06-08 15:15  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/docs/ChangeLog:

	DCM  Bug fixes
	RSD  Change software tag and Ganga job names to use ":"

2007-06-08 15:15  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/Scripts/docs/Scripts.html:

	Fix broken links

2007-06-08 15:15  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/driver/: cmd_install.pm,
	  cmd_launch.pm, cmd_remove.pm, terminate_install.pm:

	Change software tag and Ganga job names to use ":" to separate
	application name and version rather than "-" to be consistent
	build_config_table.dat.

2007-06-08 15:15  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/DataCacheManager/: init.pm, main.pm:

	Print user request

2007-06-08 15:15  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/DataCacheManager/frs_retrieve_next_batch.pm:

	Bug fixes: Don"t update catalogue in Worker Node mode.

2007-06-08 15:15  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/DataCacheManager/frs_put_all_files.pm:

	Bug fixes:
	  Don"t prepend local directory if file name absolute
	  Duplicated file checking fixed
	  Don"t update catalogue in Worker Node mode.

2007-06-08 15:15  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/: DataCacheManager/docs/dcm.html,
	  RemoteSoftwareDeployment/doc/rsd.html,
	  RemoteSoftwareDeployment/driver/initialise_globals.pm,
	  Scripts/version_number:

	Update version number

2007-06-08 11:33  rjn

	* Contrib/Documents/CalibBoxOpenDoc/May2007/calibPosition.tex:

	Just added the proper numbers

2007-06-07 18:51  boehm

	* NueAna/: AnalysisInfoAna.cxx, AnnAna.cxx, AnnAna.h,
	  FracVarAna.cxx, FracVarAna.h:

	Fixing a memory leak in ANN
	Changing Fracvars to only read in the FVNN once

	While Anainfo was getting set to the correct beam information the CC pids were not being passed it.

2007-06-07 16:31  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/Scripts/set_routines.sh:

	It would help, when defining scripts to run rsd and dcm, to pass along the args they need

2007-06-07 16:17  Nathaniel Tagg <n.tagg1@physics.ox.ac.uk>

	* Contrib/tagg/Kinema/: KinTuple.h, MyMad.cxx, MyMad.h:

	More shw length variables.

2007-06-07 12:26  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/docs/ChangeLog:

	RSD: Use Ganga
	DCM: Support Worker Nodes.

2007-06-07 12:26  Nick West <n.west1@physics.oxford.ac.uk>

	*
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/install_GridTools.sh:

	Worker Node support: If necessary create a shared, group writeable,
	DCM catalogue directory.

2007-06-07 12:26  Nick West <n.west1@physics.oxford.ac.uk>

	*
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/build_config_table.dat:

	Replace Application:minossoft:S07-04-0-R1-25-build_1 by S07-06-04-R1-25

2007-06-07 12:26  Nick West <n.west1@physics.oxford.ac.uk>

	*
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/assemble_rsd.sh:

	If RSD part of GridTools, print version number.

2007-06-07 12:26  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/driver/rsd.pm:

	Cosmetic changes to print out.

2007-06-07 12:26  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/driver/manage_soft_links.pm:

	Only shift old version of "pro" to "old" if changing version
	associated with "pro".

2007-06-07 12:25  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/:
	  RemoteSoftwareDeployment/driver/initialise_globals.pm,
	  Scripts/version_number:

	Update version number

2007-06-07 12:25  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/driver/cmd_launch.pm:

	Install command target is now lcg:queue  not lcg:site

	If Ganga available, use it to launch build job rather that internal
	job submission system

2007-06-07 12:25  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/driver/: cmd_assemble.pm,
	  parse_command.pm:

	Add mode "none" to option ----upload_method

2007-06-07 12:25  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/: doc/rsd.html,
	  driver/help.txt:

	Add mode "none" to option ----upload_method
	Install command target is now lcg:queue  not lcg:site

2007-06-07 12:25  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/DataCacheManager/init_local_disks.pm:

	Worker Node support: Get scratch disk from environment and fill
	out missing components, creating empty catalogues as necessary.

2007-06-07 12:25  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/DataCacheManager/init.pm:

	Worker Node support:-
	  Set up $SYS::worker_node.
	  Report information collected from environment.
	  Setup SE before local disk (so that can create dummy catalogues)

2007-06-07 12:25  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/DataCacheManager/docs/dcm.html:

	Worker Node support: Document

2007-06-07 12:25  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/DataCacheManager/config/:
	  minos.site_oxford_t2_wn.local_disks,
	  minos.site_oxford_t2_wn.se_access,
	  minos.site_ral_t1_wn.local_disks, minos.site_ral_t1_wn.se_access,
	  minos.site_ral_t2_wn.local_disks, minos.site_ral_t2_wn.se_access:

	Worker Node support: Configuration files

2007-06-07 12:25  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/DataCacheManager/config/:
	  minos.site_oxford_t2_ui.local_disks,
	  minos.site_oxford_t2_ui.se_access, sno.site_oxford_sno.se_access,
	  sno.site_ral_sno.se_access:

	Fix typo in comment.

2007-06-07 12:25  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/DataCacheManager/check_file_permissions.pm:

	Worker Nodes don"t have file stats.

2007-06-07 07:53  Robert Hatcher <rhatcher@fnal.gov>

	* Contrib/rhatcher/gminos_jobs/: gminos_site_minos11.py,
	  gminos_site_minos13.py:

	modify the workdir name if the file is reverse bfield.

2007-06-07 05:48  Robert Hatcher <rhatcher@fnal.gov>

	* Production/Cedar_phy/reco_MC_daikon_near_cedar_phy.C:

	Code to add ASCII DB overrides to the ENV_TSQL_URL.  Relies on the env
	variable ASCII_DB_SET to be set (so far to either "brev" or "bx113"),
	except in the case of reversed field which it can determine by itself
	from the MC filename (and thus does automagically); explicitly setting
	the env to "" will cancel the autoset. It will look for the text files in
	   "$SRT_PUBLIC_CONTEXT/Production/asciidb/cedar_daikon"
	but this can be overrided by setting ASCII_DB_PATH.  The ENV_TSQL_URL
	is expanded based on the assumption that there is a "temp" DB in the
	first URL in the list.

	For now also comment out the line:
	   //jc.Msg.SetLevel("Dbi","Fatal");
	so we can see what SEQNO is used for BFLDDBIPLANEMAP.

2007-06-07 04:50  Robert Hatcher <rhatcher@fnal.gov>

	* Production/asciidb/cedar_daikon/: brev/BFLDDBIPLANEMAP.csv,
	  brev/BFLDDBIPLANEMAPVLD.csv, brev/catalogue.db,
	  bx113/BFLDDBIPLANEMAP.csv, bx113/BFLDDBIPLANEMAPVLD.csv,
	  bx113/catalogue.db:

	Add ASCII DB text files for setting daikon MC bfield either reversed
	("brev") or scaled by 1.13 ("bx113").

2007-06-07 04:23  Brian Rebel <brebel@fnal.gov>

	* NCUtils/: Cuts/NCAnalysisCutsNC.cxx, Extraction/NCExtraction.cxx,
	  Extraction/NCExtractionTO.cxx,
	  Extrapolation/NCExtrapolationDP.cxx,
	  Extrapolation/NCExtrapolationDP.h,
	  Extrapolation/NCExtrapolationModule.cxx,
	  macros/ncccSeparationNC.C:

	no need to set the fCuts and fUtils objects again in TO extraction
	since the pointers point to the objects in the module

2007-06-07 02:18  George Irwin <gmieg@slac.stanford.edu>

	* DatabaseInterface/DbiConnection.cxx:

	Change '#else{' to '#else'.

2007-06-07 01:17  arms

	* Contrib/rhatcher/gminos_jobs/gminos_cfg_CosmicMu_near.py:

	Preliminary ND CosmicMu config script

2007-06-07 01:17  Robert Hatcher <rhatcher@fnal.gov>

	* DatabaseInterface/DbiConnection.cxx:

	Make IsSupportStatement() vs. HasStatement() usage dependent on
	ROOT_VERSION_CODE >= ROOT_VERSION(5,15,9)

2007-06-07 00:18  George Irwin <gmieg@slac.stanford.edu>

	* DatabaseInterface/DbiConnection.cxx:

	Today's ROOT changes a TSQLServer method name from IsSupportStatement() to
	HasStatement().  Since minossoft development is supposed to keep up with
	ROOT development, I changed the DbiConnection call accordingly.  However,
	it would be better for this change to be made backward compatible with
	older versions of ROOT.  Do we have to ask ROOT to retain the old name too?

2007-06-06 22:56  Nathaniel Tagg <n.tagg1@physics.ox.ac.uk>

	* Contrib/tagg/Kinema/: KinTuple.h, MyMad.cxx, MyMad.h, go.C:

	Yet more truthiness.

2007-06-06 17:37  Brian Rebel <brebel@fnal.gov>

	* NCUtils/: Cuts/NCAnalysisCuts.cxx, Cuts/NCAnalysisCuts.h,
	  Cuts/NCAnalysisCutsNC.cxx, Cuts/NCAnalysisCutsOx.cxx,
	  Cuts/NCAnalysisCutsOx.h, Extraction/NCAnalysisModule.cxx,
	  Extraction/NCExtraction.cxx, Extrapolation/NCExtrapolation.cxx,
	  Extrapolation/NCExtrapolationDP.cxx,
	  Extrapolation/NCExtrapolationModule.cxx,
	  Extrapolation/NCExtrapolationModule.h,
	  macros/nearFarExtrapolation.C:

	move oxford cuts for cleaning up FD into base class so that they are
	accessible from any daughter objects.

	fix more bugs in DP extrapolation

	fix up plot generation in extrapolation module, also add in flag for
	only using a subset of the total available events

	add nc and cc histograms for plotting energy vs separation parameter

2007-06-06 15:35  boehm

	* NueAna/: ANtpEventInfoAna.cxx, AngClusterAna.cxx, FracVarAna.cxx,
	  HitCalcAna.cxx, MSTCalcAna.cxx, NueAnaBase.h, ShwfitAna.cxx,
	  Display/NueDisplayModule.cxx, Display/NueDisplayModule.h,
	  Module/NueModule.cxx, Module/NueModule.h,
	  NueAnaTools/SntpHelpers.cxx, NueAnaTools/SntpHelpers.h:

	Move the fill event arrays code into the SNtpHelpers class and added protection to all the classes that make use of it to prevent explosive use of an unitialized array.  Also gave the NueDisplayModule the ability to create the arrays and run ok in the new setup.

2007-06-06 15:14  vahle

	* MCReweight/Zbeam.cxx:

	Make Zbeam::SetReweightConfig return the user to the TDirectory they started in

2007-06-06 15:11  vahle

	* BeamMegaFit/macros/: MakeDataHists.C, MakeFilterTrees.C:

	update to skzp histogram making code.  new cuts, cedar+daikon compatible, makes histograms for bfield corrections

2007-06-06 13:11  Minos CVS group account.  Do not commit from here!

	* Contrib/Documents/CalibBoxOpenDoc/May2007/calibPosition.tex:

	Checked through the drift calibration section. A few small changes.

2007-06-06 05:16  Robert Hatcher <rhatcher@fnal.gov>

	* PhotonTransport/PhotonInjector.cxx, TriD/TridSetup.cxx:

	Some #include previous indirectly included "TSystem.h" to allow use of
	gSystem, but latest ROOT doesn't ... so provide explicit #include.

2007-06-06 05:08  Robert Hatcher <rhatcher@fnal.gov>

	* GeoGeometry/GeoGeometry.h:

	Some #include previously pulled in <vector> but the latest ROOT doesn't,
	so provide an explicit #include <vector>.

2007-06-06 05:07  Robert Hatcher <rhatcher@fnal.gov>

	* MeuCal/MeuAnalysis.cxx:

	Some #include previous indirectly included "TSystem.h" to allow use of
	gSystem, but latest ROOT doesn't ... so provide explicit #include.

2007-06-05 20:15  ishi

	* Contrib/ishi/Plots/NDPlots.cxx:

	Coil problem run is 11277, not 11279.

2007-06-05 19:51  ishi

	* Contrib/ishi/Plots/: NDPlots.cxx, NDPlots.h, RunNDPlots.C,
	  macro/loop_data.sh, macro/loop_data_phe.sh, macro/loop_mc.sh,
	  macro/loop_mc_phe.sh, macro/loop_mc_post.sh,
	  macro/loop_mc_pre.sh, macro/plot_nd.C, macro/plot_nd_month.C,
	  macro/plot_nd_month_post.C, macro/plot_nd_month_pre.C,
	  macro/plot_nd_phe.C:

	Updates of plot generator based on Mad PAN's.
	pHE data/MC are included.

2007-06-05 17:10  kordosky

	* Mad/: MadMKAnalysis.cxx, MadMKAnalysis.h:

	blah

2007-06-05 16:20  Nick West <n.west1@physics.oxford.ac.uk>

	*
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/install_GridTools.sh:

	Remove hack, now actually run RSD and DCM to confirm installed O.K.

2007-06-05 16:20  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/driver/cmd_install.pm:

	Improve test on --soft_links arg

2007-06-05 16:20  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/: DataCacheManager/init.pm,
	  DataCacheManager/docs/dcm.html,
	  RemoteSoftwareDeployment/doc/rsd.html, Scripts/version_number:

	Update version number.

2007-06-05 16:20  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/: DataCacheManager/get_site_info.pm,
	  DataCacheManager/main.pm,
	  RemoteSoftwareDeployment/driver/get_grid_ce_name.pm,
	  RemoteSoftwareDeployment/driver/get_site_info.pm,
	  RemoteSoftwareDeployment/driver/initialise_globals.pm,
	  RemoteSoftwareDeployment/driver/rsd.pm,
	  RemoteSoftwareDeployment/driver/set_local_config.pm,
	  RemoteSoftwareDeployment/driver/set_site.pm,
	  Scripts/run_get_site_info.perl, Scripts/setup_wn.sh,
	  docs/ChangeLog:

	Standardise the collection of site related information so that DCM,
	RSD and Scripts use a common algorithm and nomenclature.

2007-06-05 10:56  Nick West <n.west1@physics.oxford.ac.uk>

	* setup/setup_minossoft_csf.csh:

	Take GridTools from MINOS_TOOLS

2007-06-05 10:49  Nick West <n.west1@physics.oxford.ac.uk>

	* setup/setup_minossoft_oxford.csh:

	Take GridTools from MINOS_TOOLS

2007-06-05 09:06  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/docs/ChangeLog:

	Start a Change Log.

2007-06-05 09:06  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/Scripts/propagate_version_number.sh:

	Don"t make version updating optional

2007-06-05 09:05  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/Scripts/: locate_and_run_setup_wn.sh, setup_wn.sh,
	  docs/Scripts.html:

	Start work on setup scripts for Worker Node

2007-06-05 09:05  Nick West <n.west1@physics.oxford.ac.uk>

	*
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/build_config_table.dat:

	Allow wild-carding in config table (part of "Rolling Software" support).
	Add GridTools to list of applications supported by RSD

2007-06-05 09:05  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/libs_and_builds/:
	  assemble_GridTools.sh, install_GridTools.sh:

	Add GridTools to list of applications supported by RSD

2007-06-05 09:05  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/driver/cmd_test.pm:

	Report error if not test command given.

2007-06-05 09:05  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/driver/cmd_remove.pm:

	Cosmetic change.

2007-06-05 09:05  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/driver/: cmd_launch.pm,
	  get_lib_list.pm, install_supporting_applications.pm:

	Allow wild-carding in config table (part of "Rolling Software" support).

2007-06-05 09:05  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/driver/: cmd_install.pm,
	  help.txt, manage_soft_links.pm:

	Manage soft links (part of "Rolling Software" support).

2007-06-05 09:05  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/driver/cmd_assemble.pm:

	Output contents of status file in assemble fails.

2007-06-05 09:05  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/: doc/rsd.html, driver/rsd.pm:

	Add support for "Rolling Software"

2007-06-05 09:05  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/: DataCacheManager/init.pm,
	  DataCacheManager/docs/dcm.html,
	  RemoteSoftwareDeployment/driver/initialise_globals.pm,
	  Scripts/version_number:

	Upated version number

2007-06-05 05:35  Nick West <n.west1@physics.oxford.ac.uk>

	* WebDocs/SnapshotRel.html:

	Add S07-06-04-R1-25

2007-06-05 04:35  ishi

	* Contrib/ishi/2DFit/: ZbeamM.cxx, ZbeamM.h, ZflukM.cxx, ZflukM.h:

	Old Zbeam and Zfluk codes is expired.

2007-06-05 04:33  ishi

	* Contrib/ishi/2DFit/: FDFit.cxx, FDFit.h, NDFit.cxx, NDFit.h,
	  README, RunFDFit.C, RunNDFit.C:

	New SKZP weight for Cedar/Daikon.

2007-06-05 00:35  Robert Hatcher <rhatcher@fnal.gov>

	*
	  Contrib/rhatcher/gminos_jobs/gminos_cfg_L010185_bfldx113_overlay.py:

	config script of overlaying bfldx113 runs.  confusion about naming conventions
	for the rock file means that one needs a symlink from existing file
	gminos_cfg_L010185_rock_bfldx113.py to gminos_cfg_L010185_bfldx113_rock.py.

2007-06-05 00:32  Robert Hatcher <rhatcher@fnal.gov>

	* Contrib/rhatcher/gminos_jobs/gminos_ffr.py:

	Three possible scenarios for doing overlays with special names:
	  * special name indicates 3-way overlay, fiducial file has special name
	    but detector/rock files don't
	  * special name indicates special conditions for 2-way, i.e. different
	    POTs/snarl (medi, lowi)
	  * special name for 2-way overlay is embedded in the detector/rock files
	    (e.g. bfldx113)
	The last case is the new one.  New cases of 2-way overlays need additions
	to the __2wayspecial and __2wayhasname array.

2007-06-05 00:27  Robert Hatcher <rhatcher@fnal.gov>

	* Contrib/rhatcher/gminos_jobs/fetch_and_build_overlays.py:

	change cmd for unpacking tar.gz file from the sites.  new tufts files have
	a path embedded in them and so "tar xzf blah.tar.gz blah.fz_gaf" no longer
	works; use wildcard to get past the path, output to stdout and redirect
	tar's output to a local file.

2007-06-04 23:03  George Irwin <gmieg@slac.stanford.edu>

	* setup/packages-S07-06-04-R1-25:

	First commit

2007-06-04 21:04  Robert Hatcher <rhatcher@fnal.gov>

	* RerootExodus/RerootToTruthModule.cxx:

	expand the field with for printing StdHep event # (from 5 to 7 chars).

2007-06-04 21:02  Robert Hatcher <rhatcher@fnal.gov>

	* RawData/RawDigitDataBlock.cxx:

	replace some tabs with spaces.

2007-06-04 20:07  rustem

	* UnfoldingData/: AlgAssign.cxx, AlgAssign.h, AlgReview.cxx,
	  AlgReview.h, AlgUnfold.cxx, AlgUnfold.h, Matrix.h,
	  UnfoldModule.h:



	Clean up code.

2007-06-04 19:54  kordosky

	* Contrib/rhatcher/gminos_jobs/gminos_cfg_reverse_bfield.py:

	fix typo

2007-06-04 19:50  kordosky

	* Contrib/rhatcher/gminos_jobs/: copy_archived_jobs.sh,
	  copy_flux_files_ral.sh, gminos_cfg_reverse_bfield.cfg,
	  gminos_cfg_reverse_bfield.py, run_ral_pnfs.sh, submit_ral.sh:

	gminos configuration files end with .py, not .cfg

2007-06-04 19:47  kordosky

	* Contrib/rhatcher/gminos_jobs/gminos_cfg_reverse_bfield.cfg:

	a mix-in configuration file to reverse the magnetic field

2007-06-04 18:28  rjn

	* DataUtil/: EnergyCorrections.cxx, EnergyCorrections.h,
	  macros/testEnergyCorrection.C:

	The preliminary version of the Calibration Group final MEU scale fudge factors are now available.

	Things to note for those users who are only interested in calibrating shower energy scale for the CC analysis, you can use the FullyCorrectShowerEnergy function, to apply both Calibration Group corrections and Masaki's shower energy tuning. Note that it is very important that you get the release type correct, for the analysis you should be using:
	Data -- Cedar_phy
	MC -- Cedar R1.24.1
	These are the only data sets for which calibration numbers are provided.

	If you are interested in making data or MC plots in fully calibrated MEU numbers you can use the CalibrationGroupEnergyCorrections function. This will convert MEU's from the sntp into fully calibrated MEU's. NB: It is very inmportant to be careful not to apply the corrections twice by calling both CalibrationGroupEnergyCorrections and FullyCorrectShowerEnergy. If you wish to do this investigate the WhichCorrection_t options and particular the kNoCalGroup option.

2007-06-04 14:06  hartnell

	* MeuCal/macros/nearValidate/mResponseDrift.C:


	A few minor tweaks

2007-06-04 13:29  thosieck

	* NCUtils/NCAnalysisUtils.cxx:

	Added fix to FindNeugenWeight since some parameters are set twice and this causes registry problems later.  This only sets each parameter once in the registry so that it will run properly

2007-06-04 11:28  rjn

	* Contrib/Documents/CalibBoxOpenDoc/May2007/:
	  CalibPosPaperDrift.eps, calibPosition.tex, farCalSumXY.eps,
	  farMEUSummary.eps, nearCalSumXY.eps, nearMEUSummary.eps:

	Copied MEU section from 2006 position paper, although the plots a rough jpeg2eps files that were taken from DocDB 3091-v1. These are not intended to be the final plots, but serve as place holders for now.

2007-06-04 04:32  Brian Rebel <brebel@fnal.gov>

	* NCUtils/: Extraction/NCAnalysisModule.cxx,
	  Extrapolation/NCBeam.cxx, Extrapolation/NCExtrapolation.cxx,
	  Extrapolation/NCExtrapolation.h,
	  Extrapolation/NCExtrapolationDP.cxx,
	  Extrapolation/NCExtrapolationModule.h,
	  macros/nearFarExtrapolation.C:


	fix the beam object to fill the graphs and histograms intelligently for
	methods that dont use the energy bin objects

	fix a couple of bugs in the DP method for how the energies of nc and cc
	events are calculated - dont use shower energies for events without showers
	in cc events.  dont use muon energies in nc events.

	make the extrapolation base class have a vector of graphs for the
	contours for each 2D view.  write out the graphs and plot them in a
	better way.

2007-06-03 23:37  ishi

	* Contrib/ishi/Plots/macro/loop_data.sh:

	Minor change.

2007-06-03 23:36  ishi

	* Contrib/ishi/Plots/: GNUmakefile, NDPlots.cxx, NDPlots.h,
	  RunNDPlots.C, macro/README, macro/loop_data.sh, macro/loop_mc.sh,
	  macro/plot.sh, macro/plot_nd.C, macro/plot_nd_month.C:

	Codes and macro to make ND data/MC comparison plots. Please refer
	README in Plots/macro.

2007-06-03 23:29  Sue Kasahara <schubert@hep.umn.edu>

	* WebDocs/Package_Overviews/: G3PTSim.html, MCApplication.html:


	Add placeholders for G3PTSim & MCApplication docs.

2007-06-03 20:28  rustem

	* PhysicsNtuple/: Handle.h, RunAlgEvent.cxx, Plot/PlotBeam.cxx,
	  Select/SelectBeam.cxx:



	Iron out couple minor bugs in PlotBeam algorithm.

2007-06-03 17:05  rustem

	* PhysicsNtuple/: Plot/PlotBeam.cxx, Plot/PlotBeam.h,
	  Select/PlotBeam.cxx, Select/PlotBeam.h, Select/SelectBeam.cxx,
	  Select/SelectBeam.h:



	Move PlotBeam from Select to Plot directory and make PlotBeam into an AlgSnarl
	algorithm. Change SelectBeam to load PlotBeam dynamically via AlgFactory. This
	removes the dependency of Select library on Plot and Hist libraries.

2007-06-03 16:28  rustem

	* PhysicsNtuple/Hist/: GNUmakefile, HistMan.cxx, HistMan.h,
	  LinkDef.h, readme.txt, tinyxml.cpp, tinyxml.h, tinyxmlerror.cpp,
	  tinyxmlparser.cpp:



	Add these files to PhysicsNtuple/Hist directory.

2007-06-03 16:22  rustem

	* PhysicsNtuple/: HistMan.cxx, HistMan.h, TinyXml/GNUmakefile,
	  TinyXml/LinkDef.h, TinyXml/readme.txt, TinyXml/tinyxml.cpp,
	  TinyXml/tinyxml.h, TinyXml/tinyxmlerror.cpp,
	  TinyXml/tinyxmlparser.cpp:



	Move these files to PhysicsNtuple/Hist directory.

2007-06-03 16:17  rustem

	* PhysicsNtuple/: GNUmakefile, LinkDef.h, RunAlgEvent.cxx,
	  RunAlgEvent.h, Fill/FillEventPid.cxx, Plot/Data.cxx,
	  Plot/PlotBasic.cxx, Plot/PlotEvent.cxx, Plot/PlotShower.cxx,
	  Plot/PlotTrack.cxx, Plot/PlotTrackGeom.cxx, Plot/PlotVertex.cxx,
	  Plot/PlotVertex.h, Select/PlotBeam.cxx:



	Move TinyXml library and HistMan code to PhysicsNtuple/Hist directory so that
	both are compiled into single shared library. Update the depedent classes to
	new path to HistMan.h file.

	Configure RunAlgEvent to read the TDirectory name using RunAlgEventDirName
	registry key. This allows running parralel chains of AlgEvent algorithms. Not
	quite as fancy as using graphs but this allows comparing multiple event
	selections all at once.

2007-06-03 11:20  hartnell

	* MeuCal/: MeuPlots.cxx, MeuPlots.h, macros/FileListSpecial.C,
	  macros/nearValidate/mResultsTable.C:


	Added hSigMapDriftX to hold the result of EnergyCorrections.h.

	mResultsTable.C now prints out the median of this new histogram.

	Note: all the other printout is the same as it was, i.e. no correction.

2007-06-03 04:49  Brian Rebel <brebel@fnal.gov>

	* NCUtils/Extrapolation/NCExtrapolationModule.cxx:

	uncomment out some lines.

	fix up how environmental variables are treated.

2007-06-02 21:49  Brian Rebel <brebel@fnal.gov>

	* NCUtils/: NCAnalysisUtils.cxx, NCType.h, Cuts/NCAnalysisCuts.cxx,
	  Extraction/NCAnalysisModule.cxx, Extraction/NCAnalysisReader.cxx,
	  Extraction/NCExtractionAS.cxx, Extraction/NCExtractionDP.cxx,
	  Extraction/NCExtractionNS.cxx, Extraction/NCExtractionTO.cxx,
	  Extrapolation/NCBeam.cxx, Extrapolation/NCBeam.h,
	  Extrapolation/NCExtrapolation.cxx,
	  Extrapolation/NCExtrapolation.h,
	  Extrapolation/NCExtrapolationDP.cxx,
	  Extrapolation/NCExtrapolationMQ.cxx,
	  Extrapolation/NCExtrapolationModule.cxx,
	  macros/ncccSeparationNC.C, macros/nearFarExtrapolation.C:

	lots of changes -

	set the beam type to be a string passed into the extraction module and
	objects so that you dont have to remember the mapping from number to beam
	type when running the module.

	change NCBeam methods called by MakeResultsHistograms() to make it possible
	to use the NCBeams with the DP and NS extrapolations.

	change interface to extrapolation module to pass in the beam type as a
	string.  also fix a few other configuration type things.

	many changes to the DP object to make it fill the NCBeam object histograms.

	make the NCExtrapoplation::PrepareNearDetector() method no longer = 0, but
	rather give it a default definition.

2007-06-02 21:23  Robert Hatcher <rhatcher@fnal.gov>

	* NCUtils/Extrapolation/: NCExtrapolationNS.cxx,
	  NCExtrapolationNS.h:

	This extrapolation method was missing a PrepareNearDetector() method,
	which became a compilation/linkage (vs. runtime) problem when the base
	class, which doesn't have one defined, went from having one declared to
	declaring it abstract virtual (i.e. = 0 ).

2007-06-02 15:16  tjyang

	* MeuCal/macros/nearValidate/mStrips.C:

	use strips from all planes

2007-06-01 20:46  thosieck

	* NCUtils/NCType.h:

	Updated some sigmas and added a kTau type

2007-06-01 20:42  rustem

	* PhysicsNtuple/Plot/: DataCorr.cxx, DataCorr.h:



	Move DataCorr class to Plot subdirectory. This class computes linear correlation coefficients
	for arrays of variables.

2007-06-01 20:40  rustem

	* PhysicsNtuple/: RecoNu.cxx, RecoNu.h, Select/SelectSpill.cxx,
	  Select/SelectSpill.h:



	A new algorithm SelectSpill to select far or near detector data spills.

	A new data class that stores complete physics information for a reconstructed neutrino event.

2007-06-01 20:38  rustem

	* PhysicsNtuple/: Beam.cxx, Beam.h, DataCorr.cxx, DataCorr.h,
	  Select/SelectFarSpill.cxx, Select/SelectFarSpill.h,
	  Store/FillFarLI.cxx, Store/FillFarLI.h:



	Remove obsolete files.

2007-06-01 20:36  rustem

	* PhysicsNtuple/: AlgEvent.h, AlgSnarl.h, AlgStore.h, Basic.cxx,
	  Basic.h, BeamData.cxx, BeamData.h, DataBlock.cxx, DataBlock.h,
	  DataItem.h, Default.cxx, Event.cxx, Event.h, Header.cxx,
	  Header.h, LinkDef.h, Record.cxx, Record.h, RunAlgSnarl.cxx,
	  Shower.cxx, Shower.h, Strip.h, Track.cxx, Track.h, Truth.cxx,
	  Truth.h, TruthReco.cxx, TruthReco.h, Vertex.h,
	  Draw/RecordStore.cxx, Plot/Data.h, Plot/PlotBasic.cxx,
	  Plot/PlotBasic.h, Plot/PlotEff.cxx, Plot/PlotEvent.cxx,
	  Plot/PlotEvent.h, Plot/PlotPur.cxx, Plot/PlotShower.cxx,
	  Save/SaveSimpleEvent.cxx, Select/PlotBeam.cxx, Select/PlotBeam.h,
	  Select/SelectBeam.cxx, Select/SelectBeam.h,
	  Select/SelectFiducial.cxx, Select/SelectNeutrino.cxx,
	  Select/SelectNeutrino.h, Store/FillBasic.cxx, Store/FillBasic.h,
	  Store/FillBeam.cxx, Store/FillBeam.h, Store/FillDataModule.cxx,
	  Store/FillDataModule.h, Store/FillEvent.cxx, Store/FillEvent.h,
	  Store/FillHeader.cxx, Store/FillHeader.h, Store/FillShower.cxx,
	  Store/FillShower.h, Store/FillStrip.cxx, Store/FillStrip.h,
	  Store/FillTrack.cxx, Store/FillTrack.h, Store/FillTruth.cxx,
	  Store/Interface.cxx, kNNAlg/FillkNN.cxx:



	Upgrade PhysicsNtuple to the latest changes in minossoft:

	1) Use database for beam cuts
	2) Use BeamDataUtil/BeamMonSpill.h for beam type information
	3) Remove local beam type enum Beam.h and switch to Conventions/BeamType.h
	4) Use new energy correction functions
	5) Use DataUtil/MCInfo.h to count protons on target for Monte-Carlo
	6) DataUtil/DataQualDB.h is used for the far detector data quality
	7) Include information from Conventions/ReleaseType.h into header information

	Add reconstructed neutrino object RecoNu that holds essential information about
	reconstructed neutrino event.

	Upgrade HistMan to use directories and string keys and update all plotting algorithms to load
	histograms through HistMan.

	Move beam reweighting and energy computation code to FillEvent allgorithm. Now FillEvent must be
	ran AFTER FillTrack, FillShower and FillTruth.

	Clean up a lot of old code and reorganize data storage classes.

2007-06-01 20:34  thosieck

	* NCUtils/: Extrapolation/NCBeam.cxx, Extrapolation/NCBeam.h,
	  Extrapolation/NCEnergyBin.cxx, Extrapolation/NCEnergyBin.h,
	  Extrapolation/NCEnergyBinGradients.cxx,
	  Extrapolation/NCEnergyBinGradients.h,
	  Extrapolation/NCExtrapolation.cxx,
	  Extrapolation/NCExtrapolation.h,
	  Extrapolation/NCExtrapolationMQ.cxx,
	  Extrapolation/NCExtrapolationMQ.h,
	  Extrapolation/NCExtrapolationModule.cxx,
	  Extrapolation/NCExtrapolationModule.h,
	  Extrapolation/NCExtrapolationRS.cxx,
	  NumRec/MinosMinimization.cxx, NumRec/MinosMinimization.h,
	  macros/nearFarExtrapolationTO.C:

	Added functionality for incorporating taus into the Marquardt sterile fit, fixed some minor bugs in NCAnalysisCuts::FindNeugenWeight, Marquardt fitting seems goot to go now

2007-06-01 17:27  boehm

	* NueAna/ANtpTruthInfoBeamAna.cxx:

	Sadly the correction to make OscProb 1 in the NearDetector was only set for running off of SR Records not St records

2007-06-01 16:37  Brian Rebel <brebel@fnal.gov>

	* NCUtils/Cuts/NCAnalysisCuts.cxx:

	fix bug in IsGoodSnarl that checked the gps information even in the near
	detector

2007-06-01 16:37  Brian Rebel <brebel@fnal.gov>

	* NCUtils/Extraction/: NCAnalysisModule.cxx, NCExtraction.cxx:

	fix filling of histograms and naming them

2007-06-01 11:14  vahle

	* MCReweight/SKZPWeightCalculator.cxx:

	adding code weight to PRL era systematic studies fits

2007-06-01 10:33  vahle

	* MCReweight/macros/WriteSZKPToDB.C:

	adding code to write PRL era systematic study skzp fit parameters to database

2007-05-31 22:08  Brian Rebel <brebel@fnal.gov>

	* NCUtils/Extrapolation/: NCExtrapolation.cxx, NCExtrapolation.h,
	  NCExtrapolationDP.cxx, NCExtrapolationNS.cxx:

	add another histogram for the contours in delta m^2 vs sin^2 2theta space.

	fill histograms for delta chi^2 values in DP extrapolation

2007-05-31 20:41  Brian Rebel <brebel@fnal.gov>

	* NCUtils/macros/nearFarExtrapolation.C:

	remove tom's paths for more general ones.  set which beams to use explicitly

2007-05-31 20:40  Brian Rebel <brebel@fnal.gov>

	* NCUtils/Extrapolation/: NCBeam.cxx, NCExtrapolationDP.cxx,
	  NCExtrapolationDP.h, NCExtrapolationModule.cxx,
	  NCExtrapolationModule.h:

	more changes to make DP extrapolation play nice with the framework.  basically
	setting the energy bins to be the same and making sure the NCBeam vector
	histograms for data, mc, fit are filled properly.

	change interface to extrapolation module to set which beams to be used in
	case only certain beams are desired.

2007-05-31 17:26  boehm

	* NueAna/Module/: NueModule.cxx, NueModule.h:

	Making the evtstpmip arrays larger to prevent problems in the future

2007-05-31 17:24  Brian Rebel <brebel@fnal.gov>

	* NCUtils/Extrapolation/: NCBeam.cxx, NCExtrapolationDP.cxx,
	  NCExtrapolationMQ.cxx:

	adapt NCExtrapolationDP to be more compatible with the framework.  not
	done yet, just commiting in case FNAL computers go belly-up soon

2007-05-31 16:42  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/Scripts/setup_ui.csh:

	Add a Program Note

2007-05-31 16:41  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/: Scripts/docs/Scripts.html, docs/tools_overview.html,
	  docs/index.html, Ganga/docs/ganga.html:

	Document Scripts and Ganga

2007-05-31 15:37  Nathaniel Tagg <n.tagg1@physics.ox.ac.uk>

	* Contrib/Documents/CalibBoxOpenDoc/May2007/: Makefile,
	  calibPosition.tex, ndlin_delta_beta.eps:

	Fix up the delta-beta plot.

	Write the nonlinearity section.

2007-05-31 14:44  Nathaniel Tagg <n.tagg1@physics.ox.ac.uk>

	* Contrib/Documents/CalibBoxOpenDoc/May2007/: ndl_non2.eps,
	  ndlin_delta_beta.eps:

	Add ND nonlinearity plots.

2007-05-31 14:02  Brian Rebel <brebel@fnal.gov>

	* NCUtils/Extrapolation/: NCExtrapolation.cxx, NCExtrapolation.h,
	  NCExtrapolationDP.cxx, NCExtrapolationMQ.cxx,
	  NCExtrapolationNS.cxx, NCExtrapolationRS.cxx:

	add functionality for making contours and drawing the fits for each beam type.

	also define WriteResources in the base class and have the derived classes
	call it before writing out other histograms.

2007-05-31 11:24  Nick West <n.west1@physics.oxford.ac.uk>

	* setup/: setup_minossoft_csf.csh, setup_minossoft_csf.sh:

	Setup GridTools

2007-05-31 10:48  Nick West <n.west1@physics.oxford.ac.uk>

	* setup/setup_minossoft_oxford.csh:

	Setup GridTools

2007-05-31 10:47  Nick West <n.west1@physics.oxford.ac.uk>

	* setup/locate_grid_tools.sh:

	A script to find the 'best' version of GridTools'

2007-05-31 10:43  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/Scripts/: setup_ui.sh, set_routines.sh:

	Factor out sh suboutines into set_routines.sh so that it can be by setup_minossoft_csf.sh

2007-05-31 10:20  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/Scripts/: set_sh_env.sh, set_shell_env.pm,
	  setup_ui.csh, setup_ui.sh:

	Script to set up GridTools on a User Interface (UI)

2007-05-31 10:19  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/Scripts/version_number:

	Unified version numbering within GridTools

2007-05-31 10:18  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/Scripts/propagate_version_number.sh:

	Utility to support unified version numbering within GridTools

2007-05-31 10:17  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/Ganga/GangaMinos.ini:

	Start work on Ganga resource file for MINOS

2007-05-31 10:14  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/DataCacheManager/main.pm:

	Remove unused $ENV::user

2007-05-31 10:14  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/: DataCacheManager/init.pm,
	  DataCacheManager/docs/dcm.html,
	  RemoteSoftwareDeployment/doc/rsd.html,
	  RemoteSoftwareDeployment/driver/initialise_globals.pm:

	Introduce a unified version numbering within GridTools

2007-05-31 01:04  Robert Hatcher <rhatcher@fnal.gov>

	* Contrib/rhatcher/gminos_jobs/gminos_ffr.py:

	Make sure 'cosmiccut', 'nDetPerSnarl', 'nRockPerSnarl' start off as the
	right type (floats) by default -- even if the default is an integral
	value.  This should make sure that Kregg's last commit of casting the
	new value to the old type doesn't cause problems when these are set later.

2007-05-31 00:36  arms

	* Contrib/rhatcher/gminos_jobs/gminos_ffr.py:

	Minor change to allow changing non-string options

2007-05-30 23:03  kordosky

	* Contrib/rhatcher/gminos_jobs/: run_ral.sh, setup_ral_bundle.sh,
	  submit_ral.sh, submit_ral_stdin.sh:

	blah

2007-05-30 21:28  arms

	* Contrib/rhatcher/gminos_jobs/:
	  gminos_cfg_L010185_near_bfldx113.py,
	  gminos_cfg_L010185_rock_bfldx113.py:

	Remove unused sign from coilcurrent specification. These cfg fiels should be usable now. The coilcurrent flag sets the magnitude of the magnetic field while the BField flag sets the direction, Normal, Reversed, Off.

2007-05-30 21:21  Robert Hatcher <rhatcher@fnal.gov>

	* Contrib/rhatcher/gminos_jobs/gminos_ffr.py:

	Allow 'coilcurrent' as a scale factor (sign ignored) for Bfield map.
	Sign of focussed particles is still set by 'BField' as 'Normal',
	'Reverse', 'Off'.

2007-05-30 19:15  arms

	* Contrib/rhatcher/gminos_jobs/: gminos_cfg_CosmicLE_far.py,
	  gminos_cfg_CosmicMu_far.py:

	Update number of events per file to 10K instead of 100K

2007-05-30 19:06  rjn

	* Contrib/Documents/CalibBoxOpenDoc/May2007/: README,
	  cCalibratedShowerEnergy.eps, calibPosition.tex,
	  calibSchemeMC.dia, calibSchemeMC.eps, driftSystematic.eps,
	  farAtten.eps, farDrift.eps, farGains.eps, holder.eps,
	  mcShowerGain10Percent.eps, nearAtten.eps, nearDrift.eps,
	  nearGains.eps:

	This is still not a completed first draft, but is working towards it. Several of the plots need to be remade in final version. Several sections, notably linearity, stopping muon, systematics studies, areas for improvements and the appendices are currently empty.

2007-05-30 18:58  arms

	* Contrib/rhatcher/gminos_jobs/:
	  gminos_cfg_L010185_near_bfld113.py,
	  gminos_cfg_L010185_near_bfldx113.py,
	  gminos_cfg_L010185_rock_bfld113.py,
	  gminos_cfg_L010185_rock_bfldx113.py:

	Rename cfg files to reflect new special filenames

2007-05-30 18:12  arms

	* Contrib/rhatcher/gminos_jobs/:
	  gminos_cfg_L010185_near_bfld113.py,
	  gminos_cfg_L010185_rock_bfld113.py:

	Revised preliminary scripts for a +13% scaled ND Bfield -- REQUIRES additional changes to gminos_jobs to work properly!! Not for use yet

2007-05-30 17:35  arms

	* Contrib/rhatcher/gminos_jobs/:
	  gminos_cfg_L010185_near_bfld113.py,
	  gminos_cfg_L010185_rock_bfld113.py:

	Preliminary scripts for a +13% scaled ND Bfield

2007-05-30 15:11  Nick West <n.west1@physics.oxford.ac.uk>

	* HWDB/util_user.php:

	function user_query_mask: Select DETECTORMASK using CURRENT_WHERE_ID
	                          Remove mask setting based of obsloete NEAR and FAR user cookies.
	function user_login: Set default CURRENT_WHERE_ID = 2
	                     Don't set NEAR or FAR
	function user_save_prefs: Don't convert value to boolean before storing.

2007-05-30 15:11  Nick West <n.west1@physics.oxford.ac.uk>

	* HWDB/util_mid.php:

	function mid_details: Fix table name case in fatal message.
	function mid_create:  Create FABCOMPONENTVLD with DETECTORMASK for corresponding row in FABDEVICETYPEVLD
	                      Confirm serial number not already in use BEFORE creating VLD.
	function mid_revise:  Bug fix: table name is FABCOMPONENT not fabcomponent

2007-05-30 15:11  Nick West <n.west1@physics.oxford.ac.uk>

	* HWDB/util_loc.php:

	function loc_details_list: Add DETECTORMASK to returned array
	function loc_details: Add DETECTORMASK to returned array
	function loc_history: Query now always a join between data and vld
	                      because search now restricted by DETECTORMASK
	function loc_create:  Pass DETECTORMASK to vld_create
	                      Remove DETECTORMASK from  before calling list_insert
	                       to generate insert SQL

2007-05-30 15:11  Nick West <n.west1@physics.oxford.ac.uk>

	* HWDB/util.php:

	function vld_create:  Add =-1
	function vld_update:  Make  and  optional
	function list_select: Add =false to prefix data. or vld.
	Add function whereid_to_detmask()
	    function detmask_to_whereid()
	    function whereid_default()

2007-05-30 15:10  Nick West <n.west1@physics.oxford.ac.uk>

	* HWDB/user_prefs.php:

	Replace Near and Far but detector.

2007-05-30 15:10  Nick West <n.west1@physics.oxford.ac.uk>

	* HWDB/out_search.php:

	Fix typo in page title

2007-05-30 15:10  Nick West <n.west1@physics.oxford.ac.uk>

	* HWDB/out_details.php:

	Fix table name case if fatal messages.

2007-05-30 15:10  Nick West <n.west1@physics.oxford.ac.uk>

	* HWDB/: mid_details.php, mid_history.php:

	Show detector info as name not mask.

2007-05-30 15:10  Nick West <n.west1@physics.oxford.ac.uk>

	* HWDB/mid_changes.php:

	Indicate site where search will take place
	Only keep changes involving site.

2007-05-30 15:10  Nick West <n.west1@physics.oxford.ac.uk>

	* HWDB/loc_search.php:

	Indicate site where search will take place
	Include DETECTORMASK as a hidden variable

2007-05-30 15:10  Nick West <n.west1@physics.oxford.ac.uk>

	* HWDB/loc_overview.php:

	Indicate site where search will take place
	Limit search to current site.

2007-05-30 15:10  Nick West <n.west1@physics.oxford.ac.uk>

	* HWDB/loc_insert.php:

	Fix typo in success message.

2007-05-30 15:10  Nick West <n.west1@physics.oxford.ac.uk>

	* HWDB/loc_history.php:

	Indicate site history refers to

2007-05-30 15:10  Nick West <n.west1@physics.oxford.ac.uk>

	* HWDB/loc_details.php:

	Indicate site of details but don't show detectormask in list

2007-05-30 15:10  Nick West <n.west1@physics.oxford.ac.uk>

	* HWDB/form.php:

	Add default field size for DETECTORMASK.

	function form_dtype: Fix table name case in fatal message.

	function form_where:
	  Add @param has_detector Optional,
	    selects only sites that have detector if true.

2007-05-30 15:10  Nick West <n.west1@physics.oxford.ac.uk>

	* HWDB/doc/: index.html, developer/01present.html,
	  developer/02process.html, developer/03valid.html,
	  developer/index.html, install/index.html, maint/index.html,
	  user/01interface.html, user/02basic.html, user/03admin.html,
	  user/04location.html, user/05component.html, user/06error.html,
	  user/07outsearch.html, user/08creating.html, user/09overlap.html,
	  user/10changes.html, user/11changing.html, user/index.html,
	  user/search.loc.found.png, user/search.loc.notfound.png,
	  user/search.loc.png, user/search.mid.details.png,
	  user/search.mid.found.png, user/search.mid.png,
	  user/users.prefs.png:

	Bring up to date.
	Remove hard to maintain 'Generated from' footer lines.

2007-05-30 11:13  Nick West <n.west1@physics.oxford.ac.uk>

	* HWDB/doc/hwdb.doxygen:

	Don't strip code comments

2007-05-30 11:11  Nick West <n.west1@physics.oxford.ac.uk>

	* HWDB/maintenance/cmd_check_recent_updates.pm:

	Add ifo from VLD entry

2007-05-30 09:04  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/DataCacheManager/scan_directory.pm:

	Require exactly one space after date in 'ls' output so can cope with files that start with a space (sigh!)

2007-05-30 08:59  Nick West <n.west1@physics.oxford.ac.uk>

	* HWDB/Doxyfile:

	Remove obsolete Doxygen config file

2007-05-30 08:55  Nick West <n.west1@physics.oxford.ac.uk>

	* HWDB/doc/: .cvsignore, hwdb.doxygen, index.html, run_doxygen.sh:

	Remove all Doxygen generated material, instead generate directly as required

2007-05-30 08:48  Nick West <n.west1@physics.oxford.ac.uk>

	* HWDB/doc/doxygen/: index.html, html/doxygen.css,
	  html/doxygen.png, html/files.html, html/footer_8php.html,
	  html/form_8php.html, html/globals.html, html/globals_enum.html,
	  html/globals_func.html, html/globals_vars.html,
	  html/header_8php.html, html/index.html, html/index_8php.html,
	  html/loc__details_8php.html, html/loc__existing_8php.html,
	  html/loc__history_8php.html, html/loc__insert_8php.html,
	  html/loc__remove_8php.html, html/loc__search_8php.html,
	  html/mid__changes_8php.html, html/mid__create_8php.html,
	  html/mid__details_8php.html, html/mid__history_8php.html,
	  html/mid__overlap_8php.html, html/mid__search_8php.html,
	  html/out__details_8php.html, html/out__history_8php.html,
	  html/out__search_8php.html, html/tab_b.gif, html/tab_l.gif,
	  html/tab_r.gif, html/tabs.css, html/user__login_8php.html,
	  html/user__manage_8php.html, html/user__prefs_8php.html,
	  html/util_8php.html, html/util__loc_8php.html,
	  html/util__mid_8php.html, html/util__out_8php.html,
	  html/util__user_8php.html:

	Remove all Doxygen generated material, instead generate directly as required

2007-05-29 22:14  Brian Rebel <brebel@fnal.gov>

	* NCUtils/: Cuts/NCAnalysisCuts.cxx,
	  Extraction/NCAnalysisModule.cxx, Extraction/NCExtraction.cxx,
	  Extraction/NCExtraction.h, Extraction/NCExtractionADM.cxx,
	  Extraction/NCExtractionADM.h, Extraction/NCExtractionAS.cxx,
	  Extraction/NCExtractionAS.h, Extraction/NCExtractionDP.cxx,
	  Extraction/NCExtractionDP.h, Extraction/NCExtractionKA.cxx,
	  Extraction/NCExtractionKA.h, Extraction/NCExtractionKAD.cxx,
	  Extraction/NCExtractionKAD.h, Extraction/NCExtractionNS.cxx,
	  Extraction/NCExtractionNS.h, Extraction/NCExtractionRO.cxx,
	  Extraction/NCExtractionRO.h, Extraction/NCExtractionRPann.cxx,
	  Extraction/NCExtractionRPann.h, Extraction/NCExtractionTO.cxx,
	  Extraction/NCExtractionTO.h, Extraction/NCExtractionTR.cxx,
	  Extraction/NCExtractionTR.h, Extraction/NCExtractionTRann.cxx,
	  Extraction/NCExtractionTRann.h, macros/ncccSeparationNC.C:


	add in some more comparison histograms to extraction objects.
	adjust some interfaces accordingly.

	add in some more comparison plots as well.

	add cut on isGoodFDData to NCAnalysisCuts::IsGoodBeamSnarl

2007-05-29 21:52  arms

	* Contrib/rhatcher/gminos_jobs/run_umn.sh:

	UMN kerberized ssh no longer requires or works with the -1 switch for protocol version 1

2007-05-29 19:32  Robert Hatcher <rhatcher@fnal.gov>

	* Contrib/rhatcher/gminos_jobs/: gminos_site_minos11.py,
	  gminos_site_minos13.py:

	add minos13 site config to match minos11 (fix small typo in minos11).

2007-05-29 19:08  Robert Hatcher <rhatcher@fnal.gov>

	* Contrib/rhatcher/gminos_jobs/: gminos_cfg_CosmicLE_far.py,
	  gminos_cfg_CosmicMu_far.py:

	initial commit for FarDet CosmicMu (LE) configuration (requires Daikon_02).

2007-05-29 15:07  Robert Hatcher <rhatcher@fnal.gov>

	* CVSROOT/modules:

	make minos/Contrib/rustem a "module" so that he can rtag it.

2007-05-29 14:29  boehm

	* NueAna/: ANtpShowerInfoAna.cxx, ANtpShowerInfoAna.h,
	  MSTCalcAna.cxx, macros/MakeAnaNueTree.C:

	Some final tweaks

2007-05-29 14:10  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/DataCacheManager/dcm_frs_job.pm:

	Special hack when getting files from FNAL that fail: 'Control connection closed'

2007-05-29 11:30  blake

	* AtNuAna/: AtNuEventSelectionAB.cxx, AtNuEventSelectionAB.h,
	  AtNuEventViewer.cxx:


	incorporating AtmosGoodTrack(...) and AtmosGoodShower(...) methods into selection.

2007-05-29 05:38  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/DataCacheManager/docs/help_summary.txt:

	Relocate doc URL

2007-05-29 05:35  Nick West <n.west1@physics.oxford.ac.uk>

	* WebDocs/WebDocs.html:

	Relocate LCG GRID doc.  Remove obsolete Database problems section. Add link to info on library compile flags

2007-05-29 04:03  ishi

	* Contrib/ishi/2DFit/FDFit.cxx:

	Save new CC analysis module for PRL analysis.
	Coming changes are for new Cedar/Daikon analysis.

2007-05-29 02:11  Brian Rebel <brebel@fnal.gov>

	* AnalysisNtuples/Module/ANtpInfoObjectFiller.cxx:

	compile first, then commit

2007-05-29 02:09  Brian Rebel <brebel@fnal.gov>

	* AnalysisNtuples/: ANtpHeaderInfo.cxx, ANtpHeaderInfo.h,
	  Module/ANtpInfoObjectFiller.cxx,
	  Module/ANtpRecoNtpManipulator.cxx,
	  Module/ANtpRecoNtpManipulator.h:

	add crate mask to check fd data quality as well as int for
	DataUtil::IsGoodFDData()

2007-05-28 21:49  asousa

	* NueAna/: data/Mda_Coeff_Far_CedarDaikon_Chimaera.dat,
	  macros/MakeAnaNueTree.C:

	Adding new coefficient file for discriminant obtained from CedarDaikon training. Changing macro defaults to use the new file and threshold cut.

2007-05-28 20:38  tjyang

	* NueAna/FracVarAna.cxx:

	use updated fv ann

2007-05-28 20:21  tjyang

	* NueAna/FracVarAna.cxx:

	change shw_max to 0 by default

2007-05-28 19:10  tjyang

	* NueAna/FracVarAna.cxx:

	fix a bug in getting shower id and track id

2007-05-28 18:44  tjyang

	* NueAna/FracVarAna.cxx:

	add protection to this package
	modify the way to get the primary shower and track

2007-05-28 11:55  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/docs/: admin_group.html, admin_install_software.html,
	  admin_procedures.html, admin_user.html, contacts.html,
	  data_access.html, data_castor.html, data_dcache.html,
	  data_fts_rtf.html, data_gfal.html, data_gridftp.html,
	  data_lfc_lcg.html, data_srm.html, data_tutorial.html,
	  document.html, environmental_variables.html, fixed_problems.html,
	  glossary.html, glue_schema.html, index.html, jobs.html,
	  jobs_edg-brokerinfo.html, jobs_edg.html, jobs_globus.html,
	  jobs_jdl.html, jobs_tutorial.html, links.html, overview.fig,
	  overview.gif, overview.html, primer.html, problems.html,
	  sites.html, status.html, status_lcg-ManageVOTag.html,
	  status_lcg-info.html, status_lcg-infosites.html,
	  status_ldapsearch.html, status_reporting_problems.html,
	  status_rgma.html, status_site.html, status_tutorial.html:

	Move GRID documentation from private repository into GrdTools

2007-05-28 11:00  Nick West <n.west1@physics.oxford.ac.uk>

	* setup/setup_minossoft_oxford.csh:

	Define STDHEP_DIR now that Labyrinth isn't used by default

2007-05-28 10:59  Nick West <n.west1@physics.oxford.ac.uk>

	* setup/packages-development:

	Add GridTools

2007-05-28 10:51  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/RemoteSoftwareDeployment/doc/overview.gif,
	  GridTools/RemoteSoftwareDeployment/doc/overview.xfig,
	  GridTools/RemoteSoftwareDeployment/doc/rsd.html,
	  RemoteSoftwareDeployment/doc/overview.gif,
	  RemoteSoftwareDeployment/doc/overview.xfig,
	  RemoteSoftwareDeployment/doc/rsd.html,
	  RemoteSoftwareDeployment/driver/.cvsignore,
	  RemoteSoftwareDeployment/driver/cmd_assemble.pm,
	  RemoteSoftwareDeployment/driver/cmd_install.pm,
	  RemoteSoftwareDeployment/driver/cmd_job.pm,
	  RemoteSoftwareDeployment/driver/cmd_launch.pm,
	  RemoteSoftwareDeployment/driver/cmd_remove.pm,
	  RemoteSoftwareDeployment/driver/cmd_test.pm,
	  RemoteSoftwareDeployment/driver/get_grid_ce_name.pm,
	  RemoteSoftwareDeployment/driver/get_tar_name.pm,
	  RemoteSoftwareDeployment/driver/get_time_stamp.pm,
	  RemoteSoftwareDeployment/driver/help.pm,
	  RemoteSoftwareDeployment/driver/help.txt,
	  RemoteSoftwareDeployment/driver/initialise_globals.pm,
	  RemoteSoftwareDeployment/driver/install_supporting_applications.pm,
	  RemoteSoftwareDeployment/driver/job_allocate_ticket_name.pm,
	  RemoteSoftwareDeployment/driver/job_get_existing_ticket_names.pm,
	  RemoteSoftwareDeployment/driver/job_make_jdl_file.pm,
	  RemoteSoftwareDeployment/driver/job_process.pm,
	  RemoteSoftwareDeployment/driver/job_read_current_ticket.pm,
	  RemoteSoftwareDeployment/driver/job_run_edg_job.pm,
	  RemoteSoftwareDeployment/driver/job_submit.pm,
	  RemoteSoftwareDeployment/driver/job_write_current_ticket.pm,
	  RemoteSoftwareDeployment/driver/local.config.example,
	  RemoteSoftwareDeployment/driver/parse_command.pm,
	  RemoteSoftwareDeployment/driver/print_file.pm,
	  RemoteSoftwareDeployment/driver/read_build_config_table.pm,
	  RemoteSoftwareDeployment/driver/replace_sw_tag.pm,
	  RemoteSoftwareDeployment/driver/report.pm,
	  RemoteSoftwareDeployment/driver/rsd.pm,
	  RemoteSoftwareDeployment/driver/run_install_script.pm,
	  RemoteSoftwareDeployment/driver/set_local_config.pm,
	  RemoteSoftwareDeployment/driver/set_site.pm,
	  RemoteSoftwareDeployment/driver/terminate.pm,
	  RemoteSoftwareDeployment/driver/terminate_install.pm,
	  RemoteSoftwareDeployment/libs_and_builds/assemble_GENIE.sh,
	  RemoteSoftwareDeployment/libs_and_builds/assemble_MyODBC.sh,
	  RemoteSoftwareDeployment/libs_and_builds/assemble_bfieldmap.sh,
	  RemoteSoftwareDeployment/libs_and_builds/assemble_by_hand.sh,
	  RemoteSoftwareDeployment/libs_and_builds/assemble_clhep.sh,
	  RemoteSoftwareDeployment/libs_and_builds/assemble_dcap.sh,
	  RemoteSoftwareDeployment/libs_and_builds/assemble_geant4.sh,
	  RemoteSoftwareDeployment/libs_and_builds/assemble_geant4_vmc.sh,
	  RemoteSoftwareDeployment/libs_and_builds/assemble_hello_world.sh,
	  RemoteSoftwareDeployment/libs_and_builds/assemble_libsigc++.sh,
	  RemoteSoftwareDeployment/libs_and_builds/assemble_log4cpp.sh,
	  RemoteSoftwareDeployment/libs_and_builds/assemble_minossoft.sh,
	  RemoteSoftwareDeployment/libs_and_builds/assemble_mysql.sh,
	  RemoteSoftwareDeployment/libs_and_builds/assemble_pythia.sh,
	  RemoteSoftwareDeployment/libs_and_builds/assemble_root.sh,
	  RemoteSoftwareDeployment/libs_and_builds/assemble_rsd.sh,
	  RemoteSoftwareDeployment/libs_and_builds/assemble_unixODBC.sh,
	  RemoteSoftwareDeployment/libs_and_builds/build_config_table.dat,
	  RemoteSoftwareDeployment/libs_and_builds/hello_world.cpp,
	  RemoteSoftwareDeployment/libs_and_builds/install_GENIE.sh,
	  RemoteSoftwareDeployment/libs_and_builds/install_MyODBC.sh,
	  RemoteSoftwareDeployment/libs_and_builds/install_bfieldmap.sh,
	  RemoteSoftwareDeployment/libs_and_builds/install_clhep.sh,
	  RemoteSoftwareDeployment/libs_and_builds/install_dcap.sh,
	  RemoteSoftwareDeployment/libs_and_builds/install_external_library.sh,
	  RemoteSoftwareDeployment/libs_and_builds/install_geant4.sh,
	  RemoteSoftwareDeployment/libs_and_builds/install_geant4_vmc.sh,
	  RemoteSoftwareDeployment/libs_and_builds/install_hello_world.sh,
	  RemoteSoftwareDeployment/libs_and_builds/install_libsigc++.sh,
	  RemoteSoftwareDeployment/libs_and_builds/install_log4cpp.sh,
	  RemoteSoftwareDeployment/libs_and_builds/install_minossoft.sh,
	  RemoteSoftwareDeployment/libs_and_builds/install_mysql.sh,
	  RemoteSoftwareDeployment/libs_and_builds/install_pythia.sh,
	  RemoteSoftwareDeployment/libs_and_builds/install_root.sh,
	  RemoteSoftwareDeployment/libs_and_builds/install_unixODBC.sh,
	  RemoteSoftwareDeployment/libs_and_builds/print.sh,
	  RemoteSoftwareDeployment/libs_and_builds/return.sh,
	  RemoteSoftwareDeployment/libs_and_builds/run.sh,
	  RemoteSoftwareDeployment/testing/edg-job-get-output.log,
	  RemoteSoftwareDeployment/testing/edg-job-status-terminated.log,
	  RemoteSoftwareDeployment/testing/edg-job-status.log,
	  RemoteSoftwareDeployment/testing/edg-job-submit.log,
	  RemoteSoftwareDeployment/testing/lcg-ManageVOTag-add.log,
	  RemoteSoftwareDeployment/testing/lcg-ManageVOTag-list.log,
	  RemoteSoftwareDeployment/testing/lcg-ManageVOTag-remove.log,
	  GridTools/RemoteSoftwareDeployment/driver/.cvsignore,
	  GridTools/RemoteSoftwareDeployment/driver/cmd_assemble.pm,
	  GridTools/RemoteSoftwareDeployment/driver/cmd_install.pm,
	  GridTools/RemoteSoftwareDeployment/driver/cmd_job.pm,
	  GridTools/RemoteSoftwareDeployment/driver/cmd_launch.pm,
	  GridTools/RemoteSoftwareDeployment/driver/cmd_remove.pm,
	  GridTools/RemoteSoftwareDeployment/driver/cmd_test.pm,
	  GridTools/RemoteSoftwareDeployment/driver/get_grid_ce_name.pm,
	  GridTools/RemoteSoftwareDeployment/driver/get_tar_name.pm,
	  GridTools/RemoteSoftwareDeployment/driver/get_time_stamp.pm,
	  GridTools/RemoteSoftwareDeployment/driver/help.pm,
	  GridTools/RemoteSoftwareDeployment/driver/help.txt,
	  GridTools/RemoteSoftwareDeployment/driver/initialise_globals.pm,
	  GridTools/RemoteSoftwareDeployment/driver/install_supporting_applications.pm,
	  GridTools/RemoteSoftwareDeployment/driver/job_allocate_ticket_name.pm,
	  GridTools/RemoteSoftwareDeployment/driver/job_get_existing_ticket_names.pm,
	  GridTools/RemoteSoftwareDeployment/driver/job_make_jdl_file.pm,
	  GridTools/RemoteSoftwareDeployment/driver/job_process.pm,
	  GridTools/RemoteSoftwareDeployment/driver/job_read_current_ticket.pm,
	  GridTools/RemoteSoftwareDeployment/driver/job_run_edg_job.pm,
	  GridTools/RemoteSoftwareDeployment/driver/job_submit.pm,
	  GridTools/RemoteSoftwareDeployment/driver/job_write_current_ticket.pm,
	  GridTools/RemoteSoftwareDeployment/driver/local.config.example,
	  GridTools/RemoteSoftwareDeployment/driver/parse_command.pm,
	  GridTools/RemoteSoftwareDeployment/driver/print_file.pm,
	  GridTools/RemoteSoftwareDeployment/driver/read_build_config_table.pm,
	  GridTools/RemoteSoftwareDeployment/driver/replace_sw_tag.pm,
	  GridTools/RemoteSoftwareDeployment/driver/report.pm,
	  GridTools/RemoteSoftwareDeployment/driver/rsd.pm,
	  GridTools/RemoteSoftwareDeployment/driver/run_install_script.pm,
	  GridTools/RemoteSoftwareDeployment/driver/set_local_config.pm,
	  GridTools/RemoteSoftwareDeployment/driver/set_site.pm,
	  GridTools/RemoteSoftwareDeployment/driver/terminate.pm,
	  GridTools/RemoteSoftwareDeployment/driver/terminate_install.pm,
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/assemble_GENIE.sh,
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/assemble_MyODBC.sh,
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/assemble_bfieldmap.sh,
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/assemble_by_hand.sh,
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/assemble_clhep.sh,
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/assemble_dcap.sh,
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/assemble_geant4.sh,
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/assemble_geant4_vmc.sh,
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/assemble_hello_world.sh,
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/assemble_libsigc++.sh,
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/assemble_log4cpp.sh,
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/assemble_minossoft.sh,
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/assemble_mysql.sh,
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/assemble_pythia.sh,
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/assemble_root.sh,
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/assemble_rsd.sh,
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/assemble_unixODBC.sh,
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/build_config_table.dat,
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/hello_world.cpp,
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/install_GENIE.sh,
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/install_MyODBC.sh,
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/install_bfieldmap.sh,
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/install_clhep.sh,
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/install_dcap.sh,
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/install_external_library.sh,
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/install_geant4.sh,
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/install_geant4_vmc.sh,
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/install_hello_world.sh,
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/install_libsigc++.sh,
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/install_log4cpp.sh,
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/install_minossoft.sh,
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/install_mysql.sh,
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/install_pythia.sh,
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/install_root.sh,
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/install_unixODBC.sh,
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/print.sh,
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/return.sh,
	  GridTools/RemoteSoftwareDeployment/libs_and_builds/run.sh,
	  GridTools/RemoteSoftwareDeployment/testing/edg-job-get-output.log,
	  GridTools/RemoteSoftwareDeployment/testing/edg-job-status-terminated.log,
	  GridTools/RemoteSoftwareDeployment/testing/edg-job-status.log,
	  GridTools/RemoteSoftwareDeployment/testing/edg-job-submit.log,
	  GridTools/RemoteSoftwareDeployment/testing/lcg-ManageVOTag-add.log,
	  GridTools/RemoteSoftwareDeployment/testing/lcg-ManageVOTag-list.log,
	  GridTools/RemoteSoftwareDeployment/testing/lcg-ManageVOTag-remove.log,
	  CVSROOT/modules:

	Move RemoteSoftwareDeployment into GridTools

2007-05-28 10:14  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/DataCacheManager/dcm.sh:

	Allow for dcm.sh to be a soft link elsewhere

2007-05-28 10:00  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/DataCacheManager/dcm.sh:

	DCM no longer part of MINOS_TOOLS

2007-05-28 09:45  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/DataCacheManager/: add_user_to_dir.pm,
	  build_nfs_catalogue.pm, catalogue.pm, check_file_permissions.pm,
	  cmd_catalogue.pm, cmd_dcache_to_castor.pm,
	  cmd_directory_ownership.pm, cmd_disk_usage.pm, cmd_get.pm,
	  cmd_help.pm, cmd_put.pm, cmd_survey.pm, cmd_test.pm,
	  cmd_uncatalogue.pm, copy_file_interlock.pm, dcm.sh,
	  dcm_frs_job.pm, disk_usage.pm, frs_analyse_retrieval_log.pm,
	  frs_collect_file_list.pm, frs_generate_transfer_script.pm,
	  frs_put_all_files.pm, frs_retrieve_all_files.pm,
	  frs_retrieve_next_batch.pm, frs_run_jobs.pm, get_cmd_options.pm,
	  get_free_space.pm, get_time_stamp.pm, global_log.pm, init.pm,
	  init_local_disks.pm, init_minos.pm, init_sno.pm, is_data_file.pm,
	  main.pm, replace_catalogue.pm, reserve.pm, scan_directory.pm,
	  scan_disks.pm, sei_assemble_command.pm, sei_dcm_url_pack.pm,
	  sei_dcm_url_unpack.pm, sei_get_local_list.pm,
	  sei_get_root_url.pm, sei_get_server_cmd.pm, sei_init.pm,
	  sei_is_local.pm, sei_prepare_directory.pm, sei_prepare_file.pm,
	  sei_search_catalogue.pm, sei_survey.pm, terminate.pm,
	  time2date.pm, uncatalogue.pm, config/minos.se_servers,
	  config/minos.site_oxford_t2_ui.local_disks,
	  config/minos.site_oxford_t2_ui.se_access,
	  config/minos.site_ral_t1_ui.local_disks,
	  config/minos.site_ral_t1_ui.se_access, config/sno.se_servers,
	  config/sno.site_oxford_sno.local_disks,
	  config/sno.site_oxford_sno.se_access,
	  config/sno.site_ral_sno.local_disks,
	  config/sno.site_ral_sno.se_access, docs/dcm.html,
	  docs/help_summary.txt, minos/frs_locate_file.pm,
	  minos/identify_file.pm, minos/sam_execute_cmd.pm,
	  minos/sam_translate_dimensions.pm, sno/frs_locate_file.pm:

	Import version 5.82 of Data Cache Manager, a GRID utility to transfer
	of files from/to local Storage Elements and from FNAL Enstore via a
	uniform CLI.

2007-05-28 08:17  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/GNUmakefile:

	Dummy make file

2007-05-28 08:11  Nick West <n.west1@physics.oxford.ac.uk>

	* CVSROOT/modules:

	Add GridTools

2007-05-28 08:07  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/.cvsignore:

	Initial revision

2007-05-28 08:07  Nick West <n.west1@physics.oxford.ac.uk>

	* GridTools/.cvsignore:

	Start to set up area for Grid Tools.  Initially these will be biased
	towards the LCG/EGEE (i.e. European) GRID and will be used by UK
	groups to use resources at RAL.  Hopefully over time it will become
	less biased with the introduction of OSG (US) GRID tools and the
	harmonisation of GRID generally.

2007-05-26 11:15  Robert Hatcher <rhatcher@fnal.gov>

	* NueAna/Display/NueDisplayModule.cxx:

	Quiet compiler's complaint about possible uninitialized pointer.  Now, if
	run with something other than NearDet or FarDet it will consistently crash
	with a null pointer rather than a random uninitialized value.

2007-05-26 04:23  Robert Hatcher <rhatcher@fnal.gov>

	* Contrib/rhatcher/gminos_jobs/gminos_ffr.py:

	Commit changes to support BeamSource 'CosmicMu', 'HepEvt', 'AtmosNu'
	as well as previous 'NuMI'.  This is mostly tested but not necessarily
	for all possible combinations.  It should get the file naming correct.

2007-05-25 23:17  rustem

	* PhysicsNtuple/Select/SelectAntiNeutrino.cxx:

	[no log message]

2007-05-25 23:15  rustem

	* PhysicsNtuple/Plot/: PlotEff.cxx, PlotEff.h, PlotPur.cxx,
	  PlotPur.h:



	Make algorithm names shorter.

2007-05-25 23:12  rustem

	* PhysicsNtuple/: Plot/PlotEfficiency.cxx, Plot/PlotEfficiency.h,
	  Plot/PlotEvent.cxx, Plot/PlotPurity.cxx, Plot/PlotPurity.h,
	  Plot/PlotTrackGeom.cxx, Select/SelectAntiNeutrino.cxx,
	  macros/select_antineu.C, macros/select_antineu_mc.C:

	[no log message]

2007-05-25 20:58  Mayly Sanchez <msanchez@tuhepi.phy.tufts.edu>

	* NueAna/: TreePID.cxx, TreePID.h, TreePIDAna.cxx:

	Adding a retuned cut pid variable, aka treepid.fCutPID2

2007-05-25 19:53  rustem

	* PhysicsNtuple/: HistMan.cxx, HistMan.h, Plot/PlotEvent.cxx,
	  Plot/PlotEvent.h, Plot/PlotShower.cxx, Plot/PlotShower.h,
	  Plot/PlotTrack.cxx, Plot/PlotTrack.h, Plot/PlotTrackGeom.cxx,
	  Plot/PlotTrackGeom.h, Plot/PlotTrackGeometry.cxx,
	  Plot/PlotTrackGeometry.h, Select/PlotBeam.cxx, Select/PlotBeam.h,
	  Select/SelectAntiNeutrino.cxx, Select/SelectAntiNeutrino.h,
	  macros/select_antineu.C:



	Change HistMan to store xml files in directory-like hierarchy and update
	the plotting algorithm to use this functionality. Replace
	PlotTrackGeometry PlotTrackGeom. Continue working on updating the
	anti-neutrino selection.

2007-05-25 17:49  Robert Hatcher <rhatcher@fnal.gov>

	* Contrib/rhatcher/gminos_jobs/setup_subbundle.csh:

	look for and source $SRT_DIST/srt/srt.csh, not srt.sh.

2007-05-25 17:48  Robert Hatcher <rhatcher@fnal.gov>

	* Contrib/rhatcher/gminos_jobs/setup_fnal_bundle.csh:

	allow optional arg (default "00") for daikon version #.

2007-05-25 17:38  Robert Hatcher <rhatcher@fnal.gov>

	* Contrib/rhatcher/gminos_jobs/setup_fnal_bundle.sh:

	allow optional arg (default "00") for daikon version #.

2007-05-25 17:36  Robert Hatcher <rhatcher@fnal.gov>

	* Contrib/rhatcher/gminos_jobs/gminos_site_rhatcher03.py:

	set indexpath for rhatcher03 node.

2007-05-25 16:54  boehm

	* NueAna/Module/NueBeamMonModule.cxx:

	Adding in a default setting for beamstring

2007-05-25 16:11  hartnell

	* NtupleUtils/: NuEvent.cxx, NuEvent.h, NuReco.cxx:


	Add variables qp, sigqp and fill them.

2007-05-25 15:17  Nick West <n.west1@physics.oxford.ac.uk>

	* DatabaseMaintenance/scripts/make_priming_set.pm:

	Add DCS_MAG_NEAR to the priming list

2007-05-25 15:09  Nathaniel Tagg <n.tagg1@physics.ox.ac.uk>

	* Contrib/tagg/Kinema/: KinTuple.h, MyMad.cxx, MyMad.h:

	Add 2nd track info, z_pi variables

2007-05-25 09:15  kordosky

	* Contrib/kordosky/base_macros/: move_stats.C, move_stats.h:

	add a function to define a pair of grey palletes

2007-05-25 01:56  Sue Kasahara <schubert@hep.umn.edu>

	* RemoteSoftwareDeployment/libs_and_builds/build_config_table.dat:


	Add application geant4_vmc:R2.1-build_0

2007-05-24 19:03  Nathaniel Tagg <n.tagg1@physics.ox.ac.uk>

	* Contrib/tagg/Kinema/test/: GNUmakefile, LinkDef.h:

	executable for Kinema

2007-05-24 19:00  Nathaniel Tagg <n.tagg1@physics.ox.ac.uk>

	* Contrib/tagg/Kinema/: GNUmakefile, KinTuple.cxx, KinTuple.h,
	  LinkDef.h, MyMad.cxx, MyMad.h, go.C:

	some custom PAN stuff, for a toy project.

2007-05-24 17:54  Brian Rebel <brebel@fnal.gov>

	* NCUtils/Extraction/NCAnalysisModule.cxx:

	clean up adding of snarls to beam tree

2007-05-24 17:42  asousa

	* NCUtils/: NCType.h, Extrapolation/LinkDef.h,
	  Extrapolation/NCExtrapolationModule.cxx,
	  Extrapolation/NCExtrapolationModule.h,
	  Extrapolation/NCExtrapolationRS.cxx,
	  Extrapolation/NCExtrapolationRS.h, macros/nearFarExtrapolation.C:

	Adding skeleton and necessary framework mods for RS extrapolation, which will run Tobi's x-section Near fit and use the results to obtain an FD prediction.

2007-05-24 16:50  Robert Hatcher <rhatcher@fnal.gov>

	* DataQualityMonitoring/: ComparisonPlotModule.h,
	  DataQualityModule.cxx, DataQualityModule.h,
	  DataQualityPlotModule.h, DirectCompareModule.cxx,
	  DirectCompareModule.h, EfficiencyPurityModule.cxx,
	  EfficiencyPurityModule.h, EventRatePlotModule.h,
	  RecoMonitoringCR.cxx, RecoMonitoringNC.cxx:

	Adjust header include paths in response to NCUtils reorganization.

2007-05-24 16:13  Brian Rebel <brebel@fnal.gov>

	* NCUtils/NCAnalysisUtils.cxx:

	fix neugen reweighting to be sure it reweights the adjusted things to the
	modbyrs4 correctly.

2007-05-24 08:12  Nick West <n.west1@physics.oxford.ac.uk>

	* setup/setup_minossoft_oxford.csh:

	Require BMAPPATH even if not setting up the rest of the labyrinth

2007-05-23 23:28  rustem

	* PhysicsNtuple/: HistMan.cxx, HistMan.h, HistUtil.cxx, HistUtil.h,
	  Fill/FillMuonId.cxx, Plot/Data.cxx, Plot/PlotEfficiency.cxx,
	  Plot/PlotEfficiency.h, Plot/PlotEvent.cxx, Plot/PlotEvent.h,
	  Plot/PlotPurity.cxx, Plot/PlotPurity.h, Plot/PlotShower.cxx,
	  Plot/PlotShower.h, Plot/PlotTrack.cxx, Plot/PlotTrack.h,
	  Plot/PlotTrackGeometry.cxx, Plot/PlotTrackGeometry.h,
	  Plot/PlotVertex.cxx, Select/PlotBeam.cxx, Select/PlotBeam.h,
	  Select/SelectAntiNeutrino.cxx, Select/SelectAntiNeutrino.h,
	  Select/SelectBeam.cxx, Select/SelectBeam.h, kNNAlg/FillkNN.cxx:



	Remove obsolete HistUtil stuff and migrate all plotting algorithms to use
	HistMan for histogram creation. HistMan now can handle int and string
	histogram keys.

	Start working on the new anti-neutrino selection code.

2007-05-23 21:06  vahle

	* Mad/MadTVAnalysis.cxx:

	Fix determination of beamtype

2007-05-23 20:59  hartnell

	* NtupleUtils/: NuEvent.cxx, NuEvent.h:


	Add "entry", which stores the current snarl number of the total
	processed (not the snarl number in the ntuples).

2007-05-23 20:56  Brian Rebel <brebel@fnal.gov>

	* NCUtils/: NCAnalysisUtils.cxx, Cuts/GNUmakefile,
	  Cuts/NCAnalysisCuts.cxx, Extraction/GNUmakefile,
	  Extraction/NCAnalysisModule.cxx, Extraction/NCAnalysisModule.h,
	  Extrapolation/GNUmakefile, Extrapolation/NCExtrapolationMQ.cxx,
	  macros/ncccSeparationNC.C:

	make the neugen reweighting do the right thing - ie reweights to current
	defaults including modbyrs4 and the reweight to adjusted current defaults
	and return the ratio of the latter to the former.

	fix make files to have separate cint dictionaries.

	add more histograms to do correlations studies of extractions

2007-05-23 20:21  vahle

	* Mad/: MadTVAnalysis.h, MadTVAnalysis.cxx, macros/MakePanTV.C:

	Updating MadTVAnalysis for new FidVol, new EnergyCorrections, will now pick ab pdf file based on beamtype

2007-05-23 20:13  boehm

	* NueAna/MuonRemovalInfoAna.cxx:

	Adjustments to use the energy correction code for the old muon/shower`:

2007-05-23 19:57  boehm

	* NueAna/: Module/NueModule.cxx, Module/NueModule.h,
	  macros/MakeAnaNueTree.C:

	Finished off the code for adding the beam type for the data based on numbers provided by
	Laura L.

2007-05-23 18:24  boehm

	* NueAna/: ANtpTrackInfoAna.cxx, NueAnalysisCuts.cxx,
	  Module/NueModule.cxx:

	Adfjustment to which muon method to use (ignore track.qp = 0)
	Make the default option no cuts in processing.

	First steps toward having data with correct beamtype

2007-05-23 15:21  boehm

	* NueAna/: LinkDef.h, MCNNVars.cxx, MCNNVars.h, NueRecord.cxx,
	  NueRecord.h:

	Adding new branch from MCNN variables to be added later

2007-05-23 13:15  annah1

	* NueAna/: SubShowerNN_DC.cxx, SubShowerNN_DC.h, SubShowerVar.cxx,
	  SubShowerVar.h, SubShowerVarAna.cxx:

	adding daikon trained subshower.pid_daikon

2007-05-23 02:40  Robert Hatcher <rhatcher@fnal.gov>

	* NCUtils/: Extraction/NCReaderHelper.cxx,
	  NumRec/MinosMinimization.h:

	Fix up a few include paths.  This is hard to get right from a test release
	after shuffling amongst directories because the unmodified base release
	can fool you by presenting them in their original location.

2007-05-22 23:35  George Irwin <gmieg@slac.stanford.edu>

	* NueAna/AnalysisInfoAna.cxx:

	Add ' #include <cassert> ' for GCC 3.3.4

2007-05-22 21:51  boehm

	* NueAna/: TreePID.cxx, TreePID.h, Module/NueModule.cxx:

	Adding place holder vars for Mayly

2007-05-22 21:32  petyt

	* Mad/data/ab_pdf_near_pmhe_cedar_daikon.root:

	Added Near Detector PDF for AB PID for "PMHE" beam (LE-150cm, 200kA)

2007-05-22 21:16  hartnell

	* NtupleUtils/NuReco.cxx:


	Update to the new FullyCorrectX group of corrections

2007-05-22 20:38  arms

	* Contrib/rhatcher/gminos_jobs/gminos_cfg_L250200_near_nccoh.py:

	Add config file for L250200 NC COH signal MC generation

2007-05-22 20:33  boehm

	* NueAna/: ANtpShowerInfoAna.cxx, ANtpTrackInfoAna.cxx,
	  ANtpTrackInfoAna.h, AnalysisInfoAna.h:

	I am getting a little sloppy, left some bugs in that last commit, those have been fixed.

	Added the addility to set the beam type for analysisinfo for use in the pids

2007-05-22 20:21  boehm

	* NueAna/: ANtpEventInfoAna.cxx, ANtpShowerInfoAna.cxx,
	  ANtpShowerInfoAna.h, ANtpTrackInfoAna.cxx, ANtpTrackInfoAna.h:

	Adding EnergyCorrection updates

2007-05-22 19:12  boehm

	* NueAna/: ANtpEventInfoNue.h, ANtpShowerInfoNue.h,
	  ANtpTrackInfoNue.h, Module/NueBeamMonModule.cxx,
	  Module/NueBeamMonModule.h, Module/NueModule.cxx,
	  Module/NueModule.h, macros/MakeAnaNueTree.C:

	Updating the ClassDef number for Event, Track, and Shower

	Adding settings to handle getting Beamtype from MC files in the Module code and changing the macro to reflect this.

2007-05-22 19:03  Brian Rebel <brebel@fnal.gov>

	* NCUtils/macros/ncccSeparationNC.C:

	count chain entries for tobi

2007-05-22 18:47  Brian Rebel <brebel@fnal.gov>

	* NCUtils/: NCBeam.cxx, NCBeam.h, NCEnergyBin.cxx, NCEnergyBin.h,
	  NCEnergyBinGradients.cxx, NCEnergyBinGradients.h,
	  NCExtrapolation.cxx, NCExtrapolation.h, NCExtrapolationDP.cxx,
	  NCExtrapolationDP.h, NCExtrapolationMQ.cxx, NCExtrapolationMQ.h,
	  NCExtrapolationModule.cxx, NCExtrapolationModule.h,
	  NCExtrapolationNS.cxx, NCExtrapolationNS.h,
	  macros/ncccSeparationNC.C:


	remove extrapolation files as they are now in the Extrapolation directory

2007-05-22 18:18  asousa

	* NCUtils/Extrapolation/: NCEnergyBin.cxx,
	  NCExtrapolationModule.cxx:

	Missed a remaining loop over all beams in module, removing reserve statements.

2007-05-22 18:11  vahle

	* NueAna/macros/MakeAnaNueTree.C:

	Make PhysicsNtuples quiet

2007-05-22 18:09  vahle

	* NueAna/: AnalysisInfoAna.cxx, AnalysisInfoAna.h,
	  AnalysisInfoNue.h, AnalysisInfoNue.cxx:

	Adding RO pid to AnalysisInfo classes

2007-05-22 17:45  hartnell

	* NtupleUtils/: NuEvent.cxx, NuEvent.h, NuReco.cxx, NuReco.h:


	Added distToEdgeEvtVtx variable and added code to calculate it using the
	PlaneOutline class.

2007-05-22 17:11  vahle

	* NueAna/: AnalysisInfoNue.h, AnalysisInfoNue.cxx,
	  AnalysisInfoAna.h, AnalysisInfoAna.cxx:

	Adding AB pid to AnalysisInfoNue classes

2007-05-22 17:05  boehm

	* NueAna/: ANtpEventInfoAna.cxx, ANtpEventInfoNue.cxx,
	  ANtpEventInfoNue.h, ANtpShowerInfoAna.cxx, ANtpShowerInfoNue.cxx,
	  ANtpShowerInfoNue.h, ANtpTrackInfoAna.cxx, ANtpTrackInfoNue.cxx,
	  ANtpTrackInfoNue.h, NueFluxWeightsAna.cxx,
	  Module/NueBeamMonModule.cxx:

	Putting phMeu back in as an energy variable, currently set to the mip value

	NuePOT.beamtype is the BeamType beamtype not zarko beamtype.

2007-05-22 15:36  Nick West <n.west1@physics.oxford.ac.uk>

	* setup/setup_minossoft_csf.csh:

	Make sure neugen3 version stays in sync when no release supplied

2007-05-22 14:56  Nick West <n.west1@physics.oxford.ac.uk>

	* setup/: setup_minossoft_csf.csh, setup_minossoft_csf.sh:

	A bit late (like about 5 years) but bring RAL setup script under CVS control

2007-05-22 14:50  Nick West <n.west1@physics.oxford.ac.uk>

	* setup/setup_minossoft_oxford.csh:

	Now require Mike's setup_neugen_version

2007-05-22 14:48  asousa

	* NCUtils/Extraction/: NCReaderHelper.cxx, NCReaderHelper.h:

	Re-adding NCReaderHelper namespace. Seems to have fallen through the cracks during the latest Spring clean.

2007-05-22 14:33  vahle

	* Mad/MadDpID.cxx:

	Update MadDpID to deal with non-standard names of far pdf files

2007-05-22 14:32  Brian Rebel <brebel@fnal.gov>

	* NCUtils/: Cuts/GNUmakefile, Extraction/GNUmakefile,
	  Extrapolation/GNUmakefile:

	use rootcint in Cuts, Extraction, and Extrapolation GNUmakefiles

2007-05-22 14:19  Brian Rebel <brebel@fnal.gov>

	* NCUtils/: GNUmakefile, LinkDef.h, NCAnalysisCuts.cxx,
	  NCAnalysisCuts.h, NCAnalysisCutsCC.cxx, NCAnalysisCutsCC.h,
	  NCAnalysisCutsCR.cxx, NCAnalysisCutsCR.h, NCAnalysisCutsNC.cxx,
	  NCAnalysisCutsNC.h, NCAnalysisCutsOx.cxx, NCAnalysisCutsOx.h,
	  NCAnalysisCutsTO.cxx, NCAnalysisCutsTO.h, NCAnalysisModule.cxx,
	  NCAnalysisModule.h, NCAnalysisReader.cxx, NCAnalysisReader.h,
	  NCAnalysisUtils.cxx, NCAnalysisUtils.h, NCExtraction.cxx,
	  NCExtraction.h, NCExtractionADM.cxx, NCExtractionADM.h,
	  NCExtractionAS.cxx, NCExtractionAS.h, NCExtractionDP.cxx,
	  NCExtractionDP.h, NCExtractionKA.cxx, NCExtractionKA.h,
	  NCExtractionKAD.cxx, NCExtractionKAD.h, NCExtractionNS.cxx,
	  NCExtractionNS.h, NCExtractionPL.cxx, NCExtractionPL.h,
	  NCExtractionRO.cxx, NCExtractionRO.h, NCExtractionRPann.cxx,
	  NCExtractionRPann.h, NCExtractionResultsADM.cxx,
	  NCExtractionResultsADM.h, NCExtractionTO.cxx, NCExtractionTO.h,
	  NCExtractionTR.cxx, NCExtractionTR.h, NCExtractionTRann.cxx,
	  NCExtractionTRann.h, NCReaderHelper.cxx, NCReaderHelper.h,
	  RPfarTrackANN.cxx, RPfarTrackANN.h, RPfarTrackLowEANN.cxx,
	  RPfarTrackLowEANN.h, RPnearTrackANN.cxx, RPnearTrackANN.h,
	  RPnearTrackLowEANN.cxx, RPnearTrackLowEANN.h, farTrackANN.cxx,
	  farTrackANN.h, farnoTrackANN.cxx, farnoTrackANN.h,
	  nearNoTrackANNbirch.cxx, nearNoTrackANNbirch.h, nearTrackANN.cxx,
	  nearTrackANN.h, nearTrackANNbirch.cxx, nearTrackANNbirch.h,
	  nearnoTrackANN.cxx, nearnoTrackANN.h, Extrapolation/GNUmakefile,
	  Extrapolation/LinkDef.h, Extrapolation/NCBeam.cxx,
	  Extrapolation/NCBeam.h, Extrapolation/NCEnergyBin.cxx,
	  Extrapolation/NCEnergyBin.h,
	  Extrapolation/NCEnergyBinGradients.cxx,
	  Extrapolation/NCEnergyBinGradients.h,
	  Extrapolation/NCExtrapolation.cxx,
	  Extrapolation/NCExtrapolation.h,
	  Extrapolation/NCExtrapolationDP.cxx,
	  Extrapolation/NCExtrapolationDP.h,
	  Extrapolation/NCExtrapolationMQ.cxx,
	  Extrapolation/NCExtrapolationMQ.h,
	  Extrapolation/NCExtrapolationModule.cxx,
	  Extrapolation/NCExtrapolationModule.h,
	  Extrapolation/NCExtrapolationNS.cxx,
	  Extrapolation/NCExtrapolationNS.h, macros/ncccSeparationNC.C,
	  macros/nearFarExtrapolation.C:


	remove copies of files that are now in subdirs, commit last subdir,
	fix some compiler warnings

2007-05-22 14:06  kordosky

	* CVSROOT/check_access:

	add Anna Holin to the NueAna list

2007-05-22 13:31  asousa

	* NCUtils/: NCExtrapolation.cxx, NCExtrapolation.h,
	  NCExtrapolationDP.cxx, NCExtrapolationDP.h,
	  NCExtrapolationMQ.cxx, NCExtrapolationMQ.h,
	  NCExtrapolationModule.cxx, NCExtrapolationModule.h,
	  NCExtrapolationNS.cxx, NCExtrapolationNS.h,
	  macros/nearFarExtrapolation.C:

	Changing the way the module reads input files in to try and improve consistency of the code. It now reads all Far/Near Data/MC uDST files from a single directory containing LXXXzYYYi directories and assigns the files to their corresponding name. Only non-empty beam directories with data nd MC files are used from then on. Scale factors are calculated in the same way and only for the existing beams. To prevent frequent looping over all BeamTypes, ScaleFactors[Near,Far] are now maps instead of vectors.

2007-05-22 13:04  Robert Hatcher <rhatcher@fnal.gov>

	* SRT_MINOS/special/pre_standard.mk:

	remove second instance of -lSpillTiming

2007-05-22 09:47  kordosky

	* SRT_MINOS/special/pre_standard.mk:

	tack -lSpillTiming onto the end of MINOSLIBS in SRT_MINOS/special/pre_standard.mk.  This is to resolve a dependency introducded into loon by DataUtil/DataQualDB.h(.cxx).  Someone who understands the build system should consider if this dependency is wise.

2007-05-22 06:02  Robert Hatcher <rhatcher@fnal.gov>

	* DocBuilder/GNUmakefile:

	DataUtil library depends on SpillTiming now, so link that in as well.

2007-05-22 06:01  Robert Hatcher <rhatcher@fnal.gov>

	* SRT_MINOS/special/compilers/GCC.mk:

	if optimizing don't complain about "inline" things that are too long (ie.
	supress those warnings with -Wno-inline).

2007-05-22 05:59  Robert Hatcher <rhatcher@fnal.gov>

	* SRT_MINOS/special/pre_standard.mk:

	DataUtil library now depends on SpillTiming.

2007-05-22 01:16  petyt

	* Mad/: MadDpAnalysis.cxx, MadPIDAnalysis.cxx, MadPIDAnalysis.h:

	Several changes to MadPIDAnalysis in readiness for the new analysis:

	- added data quality cuts from DB (using DataUtil::IsGoodFDData())
	- beam quality cuts now applied using database values
	- new energy corrections functions now used (note change to CreatePan() argument list to support this - added ReleaseType and Coreection Version)
	- AB PID now calculated for all events with a track, not just those passing pre-selection cuts
	- ConfigureRoID() updated to reflect recent changes in Rustem's PID
	- flag for Andy's FD fid vol: "is_fid_ab"
	- flag for events passing ND reclamation cuts: "nd_reclaim"

2007-05-22 01:05  petyt

	* Mad/: MadQuantities.cxx, MadQuantities.h:

	Added function Bool_t IsFidFD_AB(Int_t ievt) to apply a cut based on Andy Blake's FD fiducial volume

	Modified IsFidAll() and IsFidAllEvt() to remove cut that caused events that stop close to the coil hole being classified as uncontained in both ND and FD

	Added new methods RecoMuEnergyNew() and RecoShwEnergyNew() to utilise new track and shower corrections implemented in EnergyCorrections.

	The old functions RecoMuEnergy() and RecoShwEnergy() will remain for now so that people's code doesn't immediately break.

2007-05-22 00:55  petyt

	* Mad/macros/: CCPID_example.C, LoadLibs.C:

	Added example macro to make new MadPIDAnalysis PAN

2007-05-22 00:44  petyt

	* Mad/data/: dp_pdf_far_phe_cedar_daikon.root,
	  dp_pdf_near_L010z000i_cedar_daikon.root,
	  dp_pdf_near_L010z170i_cedar_daikon.root,
	  dp_pdf_near_L010z200i_cedar_daikon.root,
	  knn.train.far.cedar.daikon.root,
	  knn.train.near.cedar.daikon.root:

	Adding new PDFs/weight files for CC/NC selection

2007-05-21 21:32  boehm

	* Conventions/ReleaseType.cxx:

	Additional comments on correct usage of MakeReleaseType, also updating the strings that are associated with Releasetype to have CedarPhy

2007-05-21 20:25  hartnell

	* MeuCal/MeuPlots.cxx:


	Move to using EnergyCorrections::CalibrationGroupEnergyCorrections in
	it's new location

2007-05-21 19:44  scavan

	* Production/Cedar_phy/: reco_MC_far_cosmic_R1_24_1.C,
	  reco_MC_near_cosmic_R1_24_1.C:

	updated R1-24-1 scripts to not do db rollback

2007-05-21 19:09  petyt

	* DataUtil/: DataQualDB.cxx, DataQualDB.h:

	Added DataQualDB to DataUtil namespace

	contains the function:

	Bool_t DataUtil::IsGoodFDData(NtpStRecord *st)

	which checks the offline database and NtpSt data members related to data quality. Determines whether or not the given snarl was recorded during a period of "good" or "bad" datataking.

	Definition of "good data":

	Coil Status: OK (from DCS offline database table)
	HV Status:   OK (from HV offline database)
	SpillStatus: GPS worst case error <1us (from SpillServerMonitoring DB tables)
	Readout status:  cratemask==16 (all crates reading out) - from NtpSt dataquality branch

	Checks only performed for FD data. Always returns true for MC and (currently) ND data

2007-05-21 17:26  boehm

	* NueAna/: AngClusterAna.cxx, FracVarAna.cxx, MSTCalcAna.cxx,
	  NueAnalysisCuts.cxx, ShwfitAna.cxx:

	Another batch of adjustments

	AngCluster:

	  a few inputs for the weight ph values

	FracVars:
	   did not touch the presel cuts

	   changed ph measures to mip

	MSTCalc:
	  changed all energy to mip

	Shwfit:
	  energy histograms now take mip instead of meu

	  uvslope params

	SubshowerVarAna:
	  uses cluster energy in ph.gev for making the averages
	  I have no idea what to make of that

	NueAnalysisCuts:
	  make use of mips instead of core for energy cut values

2007-05-21 17:11  Brian Rebel <brebel@fnal.gov>

	* NCUtils/Extraction/: GNUmakefile, LinkDef.h,
	  NCAnalysisModule.cxx, NCAnalysisModule.h, NCAnalysisReader.cxx,
	  NCAnalysisReader.h, NCExtraction.cxx, NCExtraction.h,
	  NCExtractionADM.cxx, NCExtractionADM.h, NCExtractionAS.cxx,
	  NCExtractionAS.h, NCExtractionDP.cxx, NCExtractionDP.h,
	  NCExtractionKA.cxx, NCExtractionKA.h, NCExtractionKAD.cxx,
	  NCExtractionKAD.h, NCExtractionNS.cxx, NCExtractionNS.h,
	  NCExtractionPL.cxx, NCExtractionPL.h, NCExtractionRO.cxx,
	  NCExtractionRO.h, NCExtractionRPann.cxx, NCExtractionRPann.h,
	  NCExtractionResultsADM.cxx, NCExtractionResultsADM.h,
	  NCExtractionTO.cxx, NCExtractionTO.h, NCExtractionTR.cxx,
	  NCExtractionTR.h, NCExtractionTRann.cxx, NCExtractionTRann.h,
	  RPfarTrackANN.cxx, RPfarTrackANN.h, RPfarTrackLowEANN.cxx,
	  RPfarTrackLowEANN.h, RPnearTrackANN.cxx, RPnearTrackANN.h,
	  RPnearTrackLowEANN.cxx, RPnearTrackLowEANN.h, farTrackANN.cxx,
	  farTrackANN.h, farnoTrackANN.cxx, farnoTrackANN.h,
	  nearNoTrackANNbirch.cxx, nearNoTrackANNbirch.h, nearTrackANN.cxx,
	  nearTrackANN.h, nearTrackANNbirch.cxx, nearTrackANNbirch.h,
	  nearnoTrackANN.cxx, nearnoTrackANN.h:

	move extraction classes into own subdir

2007-05-21 17:11  Brian Rebel <brebel@fnal.gov>

	* NCUtils/Cuts/: GNUmakefile, LinkDef.h, NCAnalysisCuts.cxx,
	  NCAnalysisCuts.h, NCAnalysisCutsCC.cxx, NCAnalysisCutsCC.h,
	  NCAnalysisCutsCR.cxx, NCAnalysisCutsCR.h, NCAnalysisCutsNC.cxx,
	  NCAnalysisCutsNC.h, NCAnalysisCutsOx.cxx, NCAnalysisCutsOx.h,
	  NCAnalysisCutsTO.cxx, NCAnalysisCutsTO.h:

	first move ofcuts to own subdir

2007-05-21 16:57  hartnell

	* NtupleUtils/: NuCuts.cxx, NuCuts.h:


	Added a 0.85 cut on Andy's PID.

2007-05-21 16:54  Robert Hatcher <rhatcher@fnal.gov>

	* NeugenInterface/GNUmakefile:

	To "noshift" or not to "noshift", that is the question.  Put into the
	makefile code that test for the existence of kernlib_noshift/packlib_noshift
	and uses those if available, otherwise use plain ol' kernlib/packlib.
	This should make everyone happy.  Also test for pdflib804 and use it
	(in case pdflib alone isn't available).

2007-05-21 16:43  boehm

	* NueAna/: ANtpEventInfoAna.cxx, ANtpEventInfoAna.h,
	  ANtpEventInfoNue.cxx, ANtpEventInfoNue.h, ANtpShowerInfoAna.cxx,
	  ANtpShowerInfoNue.cxx, ANtpShowerInfoNue.h, ANtpTrackInfoAna.cxx,
	  ANtpTrackInfoNue.cxx, ANtpTrackInfoNue.h, HitCalcAna.cxx,
	  NueAnaBase.h, NueRecordAna.cxx, NueRecordAna.h, TreePIDAna.cxx,
	  Module/NueModule.cxx, Module/NueModule.h:

	First set of changes for new energy params, this set of changes include:

	ANtpEventInfo:
	 phMeu no longer exists and phMip takes its place
	 instead of storing sigcor/sigcormeu this takes directly the ph.mip value

	  mip is now used to find the largest event
	  mips are used to determine eventSignalFull, eventSignalPartial

	ANtpShowerInfo:
	  phMeu no longer exists and phMip takes its place
	  pulseHeightRatio is the ratio of energy in mip (shw/event)

	  the strip array for the moment of inertia variables takes mips as the input energy

	ANtpTrackInfo:
	  phMeu no longer exists and phMip takes its place
	  pulseHeightRatio is the ratio of energy in mip (trk/event)

	  mips are used to determine trackSignalFull, trackSignalPartial

	  the strip array for the moment of inertia variables takes mips as the input energy

	HitCalcAna:
	  Uses mip instead of meu for the energy variables in making 3D hits
	  this feeds into the angcluster information and others

	TreePIDAna:
	  set to use phMip instead of phMeu

	NueModule, NueRecordAna, NueBase:
	 - because there is no measure of mips on the event strips themselves in the standard ntuple,
	   two arrays evtstp0mip and evtstp1mip are formed by looping over all of the strips in the showers, tracks
	   in the event and placing the value in mips in the array.  This takes care of removing duplicate hits.

	 - these arrays are then passed to the different ana classes so that they can be used when looping over
	   event strips to get appropriate energy values

2007-05-21 15:08  hartnell

	* NtupleUtils/NuReco.cxx:


	Turn down message levels

2007-05-21 15:05  hartnell

	* NtupleUtils/NuZBeamReweight.cxx:


	Add PiMinus_CedarDaikon

2007-05-21 12:02  Robert Hatcher <rhatcher@fnal.gov>

	* CVSROOT/check_access:

	Add David Petyt to "DataUtil".

2007-05-21 09:55  rjn

	* DataUtil/: CalibratedShowerEnergy.cxx, EnergyCorrections.cxx,
	  EnergyCorrections.h, macros/testEnergyCorrection.C:

	Just a tidying up sort of commit. Moved the Calibration Group corrections from the obliquely named CorrectionsForMasaki to the rather easier to understand EnergyCorrections::CalibrationGroupEnergyCorrections. NB: This function is called automatically by FullyCorrectShowerEnergy, so do not pass already corrected values to FullyCorrectShowerEnergy.

2007-05-21 01:35  Sue Kasahara <schubert@hep.umn.edu>

	* ParticleTransportSim/: PTSimApplication.cxx, PTSimHit.cxx:


	VMC w/G4 double-steps some of the time when track has disappeared, e.g.
	due to decay, positron annilation, etc.  On the first call to Stepping,
	track will have to status IsTrackDisappeared true.  On the second call
	to Stepping, track will have status IsTrackStopped true.  This is inconsistent
	with VMC w/G3, and also isn't internally consistent, since sometimes
	only one step occurs instead of two.  PTSimApplication has been modified to
	adapt to this situation.  Also will report to VMC w/G4 team.

2007-05-20 23:23  Sue Kasahara <schubert@hep.umn.edu>

	* ParticleTransportSim/PTSimModule.cxx:


	At the end of the PTSimModule job, invoke the Clear() method of
	the MCApplication::Instance().  This acts to clean up the geometry,
	bfield and concrete VMC earlier than it was being done using the
	MCApplication singleton destructor, and fixes a problem with
	a segv at the end of a job when using VMC w/G4.  The problem
	was that the MCApplication singleton destruction was occuring after
	the destruction of G4 singletons' destruction. But G4
	singleton destruction needs to occur after the concrete VMC has been
	deleted, and this is handled by the MCApplication destruction.
	  The fix implemented here is a kludgy way around the problem.

2007-05-20 23:12  Sue Kasahara <schubert@hep.umn.edu>

	* MCApplication/: MCApplication.cxx, MCApplication.h:


	Add protected Clear method to release allocated memory, which in this
	case means delete all owned objects including the concrete VMC.
	PTSimModule is now a friend of the MCApplication so has access
	to the Clear method.

2007-05-20 21:30  Sue Kasahara <schubert@hep.umn.edu>

	* CandNtupleSR/Module/NtpSRModule.cxx:


	Change filling of data members:
	 detstatus.dcscoilstatus
	 detstatus.coilcurrent1
	such that the BfldDbiCoilState table is no longer used to fill these data
	members for near detector data.  For near detector data,
	"dcscoilstatus"is now filled using the CoilTools interface.
	"coilcurrent1"is now filled using the Dcs_Mag_Near table.

	Note that the filling of "dcscoilstatus" using CoilTools only allows
	the setting of CoilStatus bits kOK,kBad, and kReverse in the
	manner:
	      if ( CoilTools::IsOK(vldc) )
	           ntpdetstatus.dcscoilstatus = CoilStatus::kOK;
	      else ntpdetstatus.dcscoilstatus = CoilStatus::kBad;
	      if ( CoilTools::IsReverse(vldc) )
	           ntpdetstatus.dcscoilstatus |= CoilStatus::kReverse;
	as this is all that's currently available through the CoilTools interface.

	BfldDbiCoilState is still used to fill these data members for far
	detector data.

2007-05-20 18:42  kordosky

	* NeugenInterface/: GNUmakefile, LinkDef.h, inuke_reweight.F,
	  inuke_rw.cxx, inuke_rw.h, macros/test_random_shifts.C:

	better support for random parameter variations

2007-05-20 01:30  Robert Hatcher <rhatcher@fnal.gov>

	* NeugenInterface/inuke_reweight.F:

	gfortran requires that both args of sign(a,b) be of the same type, promote
	1.0 to 1.0d0 to match double precision "ctheta".

2007-05-19 15:09  Robert Hatcher <rhatcher@fnal.gov>

	* NueAna/LinkDef.h:

	Comment out pragma for NueAlgoCompare until such time that it exists.

2007-05-19 12:18  rjn

	* DataUtil/: EnergyCorrections.cxx, EnergyCorrections.h:

	Added to the FullyCorrect family of EnergyCorrections. Now have corrections for shower energy and track momentum/energy from range. At this point users are encouraged to use these. There will still be a few under the hood changes but at this point I think there is a workable interface.

2007-05-19 05:45  petyt

	* Mad/data/: ab_pdf_far_le_cedar_daikon.root,
	  ab_pdf_far_phe_cedar_daikon.root,
	  ab_pdf_near_le0_cedar_daikon.root,
	  ab_pdf_near_le170_cedar_daikon.root,
	  ab_pdf_near_le200_cedar_daikon.root,
	  ab_pdf_near_le_cedar_daikon.root,
	  ab_pdf_near_phe_cedar_daikon.root,
	  ab_pdf_near_pme_cedar_daikon.root:

	New PDFs for Andy Blake's PID

2007-05-19 05:43  petyt

	* Mad/MadAbID.cxx:

	MadAbID:  removed trkfitpass pre-selection requirement
	          replaced deweighted shower energy with linear version when computing y

2007-05-18 21:01  danche

	* NueAna/: AngCluster.cxx, AngCluster.h, AngClusterAna.cxx,
	  AngClusterAna.h, LinkDef.h, Display/NueDisplayModule.cxx:



	Added a variable to Angcluster (4 versions of it) to help in NC coherent analysis

2007-05-18 18:38  hartnell

	* NtupleUtils/: NuEvent.cxx, NuEvent.h:


	Added releaseType

2007-05-18 18:37  hartnell

	* NtupleUtils/NuCuts.cxx:


	No longer get releaseType here. Uses Josh's new function elsewhere

2007-05-18 17:46  Minos CVS group account.  Do not commit from here!

	* Contrib/boehm/AnaNuePlot/: AnaNuePlotMaker.h, ReleaseType.cxx,
	  ReleaseType.h, SmartHistSet.h:

	Adjustements for new release type

2007-05-18 16:24  rjn

	* DataUtil/: CalibratedShowerEnergy.cxx, CalibratedShowerEnergy.h,
	  EnergyCorrections.cxx, EnergyCorrections.h,
	  macros/testEnergyCorrection.C:

	Added FullyCorrectShowerEnergy function that should replaces the previously used shower energy corrections. Should work with birch and cedar. It also applies the appropriate calibration group corrections. Everyone should use this who used any of the previous functions.

2007-05-18 15:37  kordosky

	* NeugenInterface/macros/: test_1sigma_shifts.C,
	  test_calc_weights.C, test_random_shifts.C:

	forgot these

2007-05-18 14:42  vahle

	* NueAna/macros/LoadLibs.C:

	Adding libraries to LoadLibs so that libMad can be loaded (PhysicsNtuples dependency)

2007-05-18 14:08  Brian Rebel <brebel@fnal.gov>

	* NCUtils/: NCExtrapolationDP.cxx, NCExtrapolationDP.h:

	forgot to add these yesterday before committing.  d'oh!

2007-05-18 09:43  kordosky

	* Contrib/kordosky/other_macros/q2_resolution.C:

	blah

2007-05-18 07:48  Nick West <n.west1@physics.oxford.ac.uk>

	* DatabaseMaintenance/scripts/get_table_attribute.pm:

	Reinsert mod to use DB_TABLE_ATTRIBUTES now checksum problem fixed

2007-05-18 07:43  Nick West <n.west1@physics.oxford.ac.uk>

	* DatabaseMaintenance/scripts/dbi_query_mysql.pm:

	Make temporary buffer file name process specific to prevent conflicts between jobs

2007-05-18 06:55  Nick West <n.west1@physics.oxford.ac.uk>

	* DatabaseMaintenance/tools/dump_table_context_query.perl:

	Don't set Detector and SimMask to universally valid, lead them as they were.
	At the very least it was dishonest and with --dbs-lite it was also wrong
	as it produced two records with identical validity.

2007-05-18 04:55  Nick West <n.west1@physics.oxford.ac.uk>

	* WebDocs/SnapshotRel.html:

	Add S07-05-17-R1-25

2007-05-18 04:29  Robert Hatcher <rhatcher@fnal.gov>

	* Contrib/rhatcher/gminos_jobs/fetch_and_build_overlays.py:

	pass -k args (which set key,value pairs) on to reco_join_rock.py and
	reco_overlay.py scripts so they also get set within those processes.

2007-05-17 20:13  Brian Rebel <brebel@fnal.gov>

	* NCUtils/: LinkDef.h, NCAnalysisCutsCC.cxx, NCAnalysisUtils.cxx,
	  NCAnalysisUtils.h, NCExtrapolation.cxx, NCExtrapolation.h,
	  NCExtrapolationMQ.cxx, NCExtrapolationModule.cxx,
	  NCExtrapolationModule.h, NCExtrapolationNS.cxx, NCType.h,
	  macros/ncccSeparationNC.C, macros/nearFarExtrapolation.C:


	add NCExtrapolationDP.  make minor changes in other extrapolations, mainly
	just setting the flag for the extrapolation type.

	some minor changes to NCAnalysisUtils::FindNeugenWeight.  set the value
	of the adjusted parameter for the combination parameters to be a scale
	factor and multiply it by the default values for those parameters.

2007-05-17 16:42  George Irwin <gmieg@slac.stanford.edu>

	* setup/packages-S07-05-17-R1-25:

	First commit

2007-05-17 12:54  hartnell

	* MeuCal/: MeuCuts.cxx, MeuPlots.cxx:


	Use the new namespace "CorrectionsForMasaki" in MeuPlots.

	Trivial change to MeuCuts.

2007-05-17 11:20  rjn

	* Contrib/Documents/CalibBoxOpenDoc/May2007/: calibPosition.tex,
	  calibSchemeData.dia, calibSchemeData.eps, calibSchemeData.png,
	  calibSchemeMC.dia, calibSchemeMC.eps, calibSchemeMC.png:

	Added a few pretty explanatory diagrams

2007-05-17 09:44  hartnell

	* DataUtil/LinkDef.h:


	Add the namespace here as well.

2007-05-17 09:37  rjn

	* DataUtil/: CalibratedShowerEnergy.cxx, CalibratedShowerEnergy.h:

	Changed namespace and made it clear that this is just for Masaki, final corrections will go into EnergyCorrections

2007-05-17 09:36  kordosky

	* CVSROOT/check_access:

	add rjn (Ryan Nichol) to the list for DataUtil

2007-05-17 07:03  Nick West <n.west1@physics.oxford.ac.uk>

	* Conventions/ReleaseType.cxx:

	Add missing namespace ReleaseType:: to member function MakeReleaseType

2007-05-16 22:03  George Irwin <gmieg@slac.stanford.edu>

	* MessageService/test/GNUmakefile:

	Add -lCint for build on GCC 3.2 and GCC 3.3

2007-05-16 21:04  boehm

	* Conventions/: ReleaseType.cxx, ReleaseType.h:

	Adding standard MakeReleaseType which generates a release type by taking the
	fTitle string and the mcgeninfo string

2007-05-16 18:09  rustem

	* PhysicsNtuple/Fill/: FillMuonId.cxx, FillMuonId.h:



	DO not fill kNN variables for special cases (mip, calorimeter only, etc) when running
	production code. This is switched through Registry key:

	Registry reg(false);
	reg.Set("FillMuonIdStudy", "yes");
	reg.Set("FillMuonIdStudy", "no"); // run production code

2007-05-16 17:56  hartnell

	* MeuCal/: MeuPlots.cxx, MeuPlots.h, MeuSummary.cxx, MeuSummary.h,
	  macros/FileListSpecial.C, macros/nearValidate/mResponseDrift.C:


	Implemented the new CalibratedShowerEnergy code

2007-05-16 17:29  Nathaniel Tagg <n.tagg1@physics.ox.ac.uk>

	* DataUtil/CalibratedShowerEnergy.cxx:

	Fix: the drift bug exists in all Cedar versions before R1.24.2, but also exists in R1.24.cal.

2007-05-16 17:26  hartnell

	* DataUtil/CalibratedShowerEnergy.cxx:


	1.018 needs a semicolon after it... not my bug I don't think

2007-05-16 17:25  hartnell

	* DataUtil/: CalibratedShowerEnergy.cxx, CalibratedShowerEnergy.h,
	  LinkDef.h:


	Put code in a namespace: CalibratedShowerEnergy

	Not sure if the LinkDef is correct... it compiles and runs but not sure
	about cint stuff.

	Please change as appropriate

2007-05-16 16:37  Nick West <n.west1@physics.oxford.ac.uk>

	* DatabaseMaintenance/tools/dump_table_context_query.perl:

	Fix bug calculating next context attempt when gap goes back to 1970.
	For dbs-lite dump table even if missing from one detector.

2007-05-16 16:10  rustem

	* PhysicsNtuple/: FluxInfo.cxx, FluxInfo.h, HistUtil.cxx,
	  HistUtil.h, Fill/FillMuonId.cxx:



	Remove root_init() function from HistUtil. This is an
	obsolete file which is only kept for backward compatibility.
	It will be removed when I have time to rewrite stuff that
	depends on it.

2007-05-16 15:14  kordosky

	* NueAna/macros/LoadLibs.C:

	add

	gSystem -> Load("libPhysicsNtuplekNNAlg.so");

2007-05-16 14:52  Nathaniel Tagg <n.tagg1@physics.ox.ac.uk>

	* DataUtil/CalibratedShowerEnergy.cxx:

	Add the historical 1.8% correction factor from the PRL era:
	Birch FD real-data gets increased by 1.8%.

	---N

2007-05-16 09:31  Minos CVS group account.  Do not commit from here!

	* Contrib/barr/na49an/na49an.cxx:

	Update some plots and implementation of Automatic fitter

2007-05-16 08:28  thosieck

	* NCUtils/: NCBeam.cxx, NCEnergyBinGradients.cxx,
	  NCEnergyBinGradients.h, NCExtrapolationMQ.cxx,
	  NCExtrapolationMQ.h, NCExtrapolationModule.cxx,
	  NumRec/MinosMinimization.cxx, NumRec/MinosMinimization.h:

	Main changes since my last commit are adding loops and functionality to fit for shower and track systematic parameters, Marquardt fitting now properly fits for these two systematic parameters

2007-05-16 00:33  tjyang

	* NueAna/: Ann.cxx, Ann.h, AnnAna.cxx, AnnAna.h, FracVarAna.cxx,
	  data/ann040907_6inp.root, data/ann050107_30inp.root,
	  data/fvann032007.root, macros/LoadLibs.C:

	update ANN

2007-05-15 21:32  Brian Rebel <brebel@fnal.gov>

	* DataQualityMonitoring/: BeamMonitoring.cxx, RecoMonitoringNC.cxx:

	quiet some messages

2007-05-15 20:22  boehm

	* Conventions/ReleaseType.h:

	Adding ReleaseType::kCedarPhyData as an option

2007-05-15 19:54  Nathaniel Tagg <n.tagg1@physics.ox.ac.uk>

	* DataUtil/CalibratedShowerEnergy.cxx:

	Add check for R1_24_calB when applying hte drift correction.

2007-05-15 19:45  boehm

	* Conventions/: ReleaseType.cxx, ReleaseType.h:

	Adding Names for different SubTypes of Cedar:

	R1_24_0
	R1_24_1
	R1_24_2
	Cedar_Phy
	R1_24_Cal
	R1_24_CalB

	Also new functions to help deal with subtype information

2007-05-15 19:33  Nathaniel Tagg <n.tagg1@physics.ox.ac.uk>

	* DataUtil/CalibratedShowerEnergy.cxx:

	fix id and log cvs tags

2007-05-15 19:27  Nathaniel Tagg <n.tagg1@physics.ox.ac.uk>

	* DataUtil/: CalibratedShowerEnergy.cxx, CalibratedShowerEnergy.h,
	  LinkDef.h:

	First commit of an idea we want to show the CC group and other analysers, to help speed along the CC analysis with a minimum of miscommunication.
	This publicly-accessible function will apply the calibration group's best-guess fudge factor to the data or MC shower energy scale.  However, for this to work, EVERYONE will have to use it in their PANs.  Detailed email proposal to follow soon....

2007-05-15 19:08  Sue Kasahara <schubert@hep.umn.edu>

	* ParticleTransportSim/macro/: PTSim_testG3.C, PTSim_testG4.C:


	Remove "itostr" function in favor of using templated UtilString::ToString.

2007-05-15 19:00  Sue Kasahara <schubert@hep.umn.edu>

	* Util/LinkDef.h:


	Add lines:
	#pragma link C++ function UtilString::ToString<int>;
	#pragma link C++ function UtilString::ToString<double>;
	so that UtilString::ToString can be used within a root macro for these
	two data types. At least I think these are required.

2007-05-15 17:59  Brian Rebel <brebel@fnal.gov>

	* DataQualityMonitoring/: BeamMonitoring.cxx, BeamMonitoring.h,
	  ComparisonPlotModule.cxx, DataQualityModule.cxx,
	  DirectCompareModule.cxx, EfficiencyPurityModule.cxx,
	  EventRatePlotModule.cxx, RecoMonitoring.cxx, RecoMonitoring.h,
	  RecoMonitoringCR.cxx, RecoMonitoringCR.h, RecoMonitoringNC.cxx,
	  RecoMonitoringNC.h:

	create histograms on the heap so as not to cause exceptions when the stack
	runs out of space

2007-05-15 17:33  hartnell

	* NtupleUtils/: NuEvent.cxx, NuEvent.h:


	Added different pids: roID, abID and jeID.

2007-05-15 13:09  scavan

	* Production/Cedar_phy/: reco_MC_far_cosmic_R1_24_1.C,
	  reco_MC_near_cosmic_R1_24_1.C:

	Removed HvSinglesTask and ListsToMake changes which were made for cedar_phy

2007-05-15 12:48  scavan

	* Production/Cedar_phy/reco_MC_far_cosmic_R1_24_1.C:

	change GeVPerMip back to 0.001737

2007-05-15 12:29  scavan

	* Production/Cedar_phy/: reco_MC_far_cosmic_R1_24_1.C,
	  reco_MC_near_cosmic_R1_24_1.C:

	These are cosmic scripts for use with R1.24.1

	They use PEGainCalScheme instead of PEGainAggCalScheme
	They do not have the SpectrometerFudge setting

	Otherwise, they are identical to cedar_phy versions

2007-05-14 21:20  kordosky

	* Contrib/kordosky/other_macros/: form_length.C,
	  inuke_1sigma_plots.C, inuke_1sigma_weights.C, shw_energy_calib.C,
	  ws_density.C:

	blah

2007-05-14 18:55  scavan

	* Production/Cedar_phy/: reco_MC_far_cosmic_cedar_phy.C,
	  reco_MC_near_cosmic_cedar_phy.C:

	updated muon MC scripts for R1.24CalB with muondriftcalscheme

2007-05-14 17:34  kordosky

	* NeugenInterface/neugen_config.h:

	add

	#ifndef __CINT__ ... #endif

	around declaration of const float k_std_dis_res[][][] since CINT crashes when trying to process the file in root 5.15.06.

2007-05-14 07:29  Nick West <n.west1@physics.oxford.ac.uk>

	* DatabaseMaintenance/scripts/auto_distribute.perl:

	Call get_table_attribute after setting up context, so that any problem with the former doesn't result in a broken context file

2007-05-14 01:54  Sue Kasahara <schubert@hep.umn.edu>

	* IoModules/IoFileListItem.cxx:


	Fix a loophole in yesterday's commit.

2007-05-13 13:47  vahle

	* MCReweight/: SKZPWeightCalculator.cxx, SKZPWeightCalculator.h,
	  Zbeam.cxx, data/beamsys_Boston.root, data/beamsys_PRL.root,
	  data/beamsys_PiMinus.root, data/beamsys_PiMinus_CedarDaikon.root,
	  macros/TestSKZPWeightCalculator.C:

	Adding new histogram files for Zbeam systematics.  Old hist file only worked with bleeding edge root (TDirectoryFiles are written in the new root instead of TDirectories).  Updated Zbeam to read in 4 separate files instead of 1 file with 4 directories.  Added different run periods to SKZPWeightCalculator to apply different weights depending on supplied run period.  Default is runI which does the same thing as it always used to.  If RunI is specified, weights are applied to ME and HE to correct for beam spot size effects.  If RunII is specified, LE010 beam is weighted to le9 beam.  Also supplied a function to supply a total weight which is the exposure weighted average of the two run periods.  Finally, the macro TestSKZPWeight has been updated to demonstrate the use of all these new features.

2007-05-13 04:37  Robert Hatcher <rhatcher@fnal.gov>

	* IoModules/IoFileListItem.h:

	add missing #include <vector> (necessary for gcc 3.4 and gcc 4.1)

2007-05-13 01:49  Sue Kasahara <schubert@hep.umn.edu>

	* IoModules/: IoFileListItem.cxx, IoFileListItem.h:


	Modify build of input file list given to AddFile such that
	wildcards may be present in directory list in addition to
	filename.
	For example:
	  jc.Input.AddFile("$ROOT_DATA/2007*/ne*/n000*.sntp.root");
	  jc.Input.List(); // list selected files
	As requested by Josh & Aaron.

2007-05-11 21:49  arms

	* AnalysisNtuples/: Module/ANtpInfoObjectFillerNC.cxx,
	  Module/ANtpInfoObjectFillerNC.h, Module/CondensedNtpModuleNC.cxx,
	  Module/CondensedNtpModuleNC.h, macros/makeCondensedNtupleNC.C:

	Hard-code VHS training filenames. Adjust the macro accordingly.

2007-05-11 21:03  arms

	* NCUtils/data/: vhstrain.far.20x20c40.daikon.cedar.root,
	  vhstrain.near.rot.20x20c40.daikon.cedar.root:

	Remove obsolete far training file for VHS. Add new near training file for VHS. Note that training file is selected in AnalysisNtuples/macros/makeCondensedNtupleNC.C at runtime.

2007-05-11 21:03  arms

	* AnalysisNtuples/macros/makeCondensedNtupleNC.C:

	Add (commented) line for VHS training file selection for near detector running.

2007-05-11 16:35  boehm

	* NueAna/Sensitivity/NueSensitivity.cxx:

	was using an int instead of a float for a param

2007-05-11 13:42  Nick West <n.west1@physics.oxford.ac.uk>

	* DatabaseMaintenance/scripts/get_table_attribute.pm:

	Back out change to use DB_TABLE_ATTRIBUTES until checksum problems understood and fixed

2007-05-11 13:42  Robert Hatcher <rhatcher@fnal.gov>

	* MessageService/test/GNUmakefile:

	MsgTripWire references TSystem which tickles (via new class TVersionCheck)
	the need to link the standalone test executables to ROOT's libCore.so.
	Add -lCore to BINLIBS; add it to NODEP_LIBS as a list of things not to
	check dependencies on (since it isn't built by this package).

2007-05-10 22:27  Brian Rebel <brebel@fnal.gov>

	* NCUtils/: NCAnalysisCuts.cxx, NCAnalysisCutsCC.cxx,
	  NCAnalysisModule.cxx, NCAnalysisModule.h, NCExtraction.h,
	  NCExtractionADM.cxx, NCExtractionADM.h, NCExtractionAS.cxx,
	  NCExtractionAS.h, NCExtractionDP.cxx, NCExtractionDP.h,
	  NCExtractionKA.cxx, NCExtractionKA.h, NCExtractionKAD.cxx,
	  NCExtractionKAD.h, NCExtractionNS.cxx, NCExtractionNS.h,
	  NCExtractionPL.cxx, NCExtractionPL.h, NCExtractionRO.cxx,
	  NCExtractionRO.h, NCExtractionRPann.cxx, NCExtractionRPann.h,
	  NCExtractionTO.cxx, NCExtractionTO.h, NCExtractionTR.cxx,
	  NCExtractionTR.h, NCExtractionTRann.cxx, NCExtractionTRann.h,
	  NCType.h:


	NCExtractionXX::Prepare() methods are now basically empty and left as a
	place holder for future configuration stuff.

	add code to do correlations of selection methods.

	fix cut for selection of far beam events as the trigger time definition
	changed.

2007-05-10 20:29  ishi

	* Contrib/ishi/2DFit/: FDFit.cxx, FDFit.h, GNUmakefile, NDFit.cxx,
	  NDFit.h, README_1.3e20pot, RunFDFit.C, RunNDFit.C, ZbeamM.cxx,
	  ZbeamM.h, ZflukM.cxx, ZflukM.h, fddataquality.h, gaussj.cxx:

	CC analysis code (2d grid fit method).
	The same algorithm as in Contrib/ishi/CCAnalysisSys, and will give the
	same answers as that by them, but have (1)MINOS module style, (2)multi
	beam FD fit, (3)capability to fit to multi model, (4)flexibility to
	select beam configurations and (5)capability to use y dependence in FD
	fit (optional).
	Some codes are copied from the other modules to have reproducibility
	within this module.

2007-05-10 18:08  boehm

	* NueAna/Module/NueModule.cxx:

	In preparation for the Dragon processing - changing the default SKZP paramaterization to the "PiMinus_CedarDaikon" configuration.

2007-05-10 17:27  Minos CVS group account.  Do not commit from here!

	* Contrib/barr/na49an/na49an.cxx:

	making some plots

2007-05-10 17:26  Minos CVS group account.  Do not commit from here!

	* Contrib/barr/na49an/makefile:

	change makefile to allow ROOT interface

2007-05-10 17:25  Minos CVS group account.  Do not commit from here!

	* Contrib/barr/na49an/binlistc.cxx:

	change bins definition

2007-05-10 17:24  Minos CVS group account.  Do not commit from here!

	* Contrib/barr/na49an/binlistc.h:

	change number of bins definition

2007-05-10 16:32  pittam

	* NCUtils/NCExtractionRPann.cxx:

	fixing bug that led to PDFs not being reweighted

2007-05-10 12:37  asousa

	* NCUtils/: NCExtractionAS.cxx, NCExtractionKA.cxx,
	  NCExtractionKAD.cxx, NCExtractionNS.cxx, NCExtractionRO.cxx,
	  NCExtractionTO.cxx, NCExtrapolationMQ.cxx:

	Moving histogram declaration from Prepare to DoExtraction method in NCextractionAS. Quieting down many compilation warnings.

2007-05-10 01:20  arms

	* Contrib/rhatcher/gminos_jobs/: umn_copy_flux.sh,
	  umn_list_cluster.sh, umn_list_wrkdirs.sh:

	Tweak to umn support scripts

2007-05-09 15:41  Brian Rebel <brebel@fnal.gov>

	* NCUtils/NCAnalysisCuts.cxx:


	only check hvStatus for the far detector

2007-05-09 14:23  scavan

	* Production/Cedar_phy/reco_MC_near_cosmic_cedar_phy.C:

	a script for MC near cosmic processing in cedar_phy

2007-05-09 14:08  hartnell

	* MeuCal/: MeuHistos.cxx, MeuPlots.cxx, MeuReco.cxx,
	  MeuSummary.cxx, MeuSummary.h, macros/FileListSpecial.C:


	Added two new variables:
	WinSigLinOnly
	WinSigDrf

	These allow the linearity to be studied independently of the
	drift. These variables are obtained from recalibration since the
	information is not available in the ntuples.

2007-05-09 14:06  hartnell

	* MeuCal/macros/nearValidate/mResponseDrift.C:


	The plots for adc, siglin, sigcor etc were each normalised
	separately. This caused confusion when trying to interpret the plots.

	Now, when two histograms are plotted on top of each other they are
	normalised to the same value.

2007-05-09 13:53  pittam

	* NCUtils/: NCExtractionRPann.cxx, NCExtractionRPann.h,
	  RPfarTrackANN.cxx, RPfarTrackANN.h, RPfarTrackLowEANN.cxx,
	  RPfarTrackLowEANN.h:

	Adding in far detector trained networks for RPann

2007-05-09 13:47  asousa

	* NCUtils/macros/ncccSeparationNC.C:

	Small mod to load libRFIO before libNeugenInterface, otherwise rfio* missing symbol errors occur.

2007-05-09 08:43  hartnell

	* MeuCal/MeuAnalysis.cxx:


	A few minor changes to recalibration code. All effectively cosmetic.

2007-05-08 21:52  tjyang

	* MeuCal/macros/nearValidate/mResponseDrift.C:

	correctly set the axis range for MC

2007-05-08 17:50  Sue Kasahara <schubert@hep.umn.edu>

	* MCNtuple/NtpMCFluxWgt.cxx:


	Initialize all 33 characters of the Char_t beam[33]; data member
	to null in the NtpMCFluxWgt class constructor.

2007-05-08 16:30  rjn

	* Contrib/Documents/CalibBoxOpenDoc/May2007/calibPosition.tex:

	Outline of this year's position paper

2007-05-08 16:11  Brian Rebel <brebel@fnal.gov>

	* NCUtils/: NCExtrapolationMQ.cxx, NCExtrapolationModule.cxx,
	  NCExtrapolationModule.h, NCExtrapolationNS.cxx, NCType.h,
	  macros/nearFarExtrapolation.C:


	add code to NCExtrapolationXX.cxx files to create their own directories
	for storing plots in the output file.

	remove unnecessary variables from NCExtrapolationModule.  also add
	functionality to use new NS extrapolation.  compact some lines for
	determinging MC beam type - these should be unnecessary as the
	NCAnalysisModule should set that before filling the trees.
	fix finding of uDST files in extrapolation module to reflect the
	directory structure on d138/cedar/uDST

	clean up the macro for doing the extrapolation by having it
	set only one extraction type and any number of extrapolations.

	add extrapolation and extraction names to NCType

2007-05-08 14:49  Nick West <n.west1@physics.oxford.ac.uk>

	* setup/packages-S07-05-06-R1-25:

	Delete RDBC (the package that refused to die)

2007-05-08 14:23  Brian Rebel <brebel@fnal.gov>

	* AnalysisNtuples/: ANtpBeamInfo.cxx, ANtpBeamInfo.h,
	  ANtpHeaderInfo.cxx, ANtpHeaderInfo.h,
	  Module/ANtpInfoObjectFiller.cxx,
	  Module/ANtpInfoObjectFillerBeam.cxx,
	  macros/makeCondensedNtupleNC.C:


	forgot to commit the changes for the new dataquality variables

2007-05-08 13:02  kordosky

	* Mad/macros/MakePanMK.C:

	sss

2007-05-08 12:50  kordosky

	* Mad/: MadMKAnalysis.cxx, MadMKAnalysis.h, macros/MakePanMK.C:

	support intranuke reweighting

2007-05-08 12:31  kordosky

	* NeugenInterface/: inuke_rw.cxx, inuke_rw.h, shower_ntuple.h:

	forgot these

2007-05-08 11:31  Nick West <n.west1@physics.oxford.ac.uk>

	* WebDocs/SnapshotRel.html:

	Add S07-05-06-R1-25

2007-05-08 10:36  blake

	* AtNuAna/: AtNuEventDisplayAB.cxx, AtNuEventNtuple.cxx,
	  AtNuEventSelectionAB.cxx, AtNuEventSelector.cxx,
	  AtNuEventViewer.cxx:


	event selection: fix bugs in analysis of veto shield hits.

2007-05-08 09:23  Nick West <n.west1@physics.oxford.ac.uk>

	* DatabaseMaintenance/doc/dbmauto_master.html:

	Add section Adding a New Table

2007-05-08 08:44  Nick West <n.west1@physics.oxford.ac.uk>

	* DatabaseMaintenance/scripts/make_priming_set.pm:

	Add DB_TABLE_ATTRIBUTES to priming list

2007-05-08 08:36  Nick West <n.west1@physics.oxford.ac.uk>

	* DatabaseMaintenance/scripts/: auto_distribute.perl,
	  get_table_attribute.pm:

	Don't hardwire table attributes; instead read them from DB table DB_TABLE_ATTRIBUTES

2007-05-07 20:18  kordosky

	* NeugenInterface/: LinkDef.h, deduce_fate.F, fill_stdhep.cxx,
	  fill_stdhep.h, inuke_reweight.F, neugen_config.h,
	  neugen_wrapper.cxx, neugen_wrapper.h,
	  summarise_hadronic_system.F, macros/test_fill_stdhep.C:

	intranuke reweighting!

2007-05-07 19:58  boehm

	* NueAna/Module/: NueModule.cxx, NueModule.h:

	Adding an option to the NueModule that if this flag is set and it is reading MRCC and sntp data, reject any snarls that only have sntp data.  This is really designed to accomodate problems with concatenated files.

2007-05-07 19:21  kordosky

	* CVSROOT/check_access:

	add kordosky to neugen3 access list

2007-05-07 19:12  Brian Rebel <brebel@fnal.gov>

	* NCUtils/: LinkDef.h, NCAnalysisCuts.cxx, NCExtrapolationNS.cxx,
	  NCExtrapolationNS.h:


	add first shot at putting niki's beam matrix extrapolation into the
	framework.

	change NCAnalysisCuts to reflect use of better db tools for tracking
	fd data quality

2007-05-07 19:06  mdier

	* BeamDataUtil/BeamMonSpill.cxx:

	Override the target position (i.e. beam type as recorded in the beammonspill database table) for spills after shutdown 2006. For a still unknown reason, a fraction of the spills got assigned the wrong target position. This assignment is purely based on the "timestamp" of the spill. The timestamp used to determine the target position is just based on a few devices. Something must be screwed up with those times. The overall spilltime seems to be fine.

2007-05-07 19:04  mdier

	* BeamDataUtil/test/StndBmsSpin.cxx:

	add a few extra histos

2007-05-07 15:43  boehm

	* NueAna/Sensitivity/NueSensitivity.cxx:

	Removing unused variable

2007-05-07 13:50  Nick West <n.west1@physics.oxford.ac.uk>

	* DatabaseMaintenance/scripts/get_table_attribute.pm:

	Retract last commit.  There is something odd about CALADCTOPES: First 6% of VLDs have > 50% of all rows

2007-05-07 03:59  Sue Kasahara <schubert@hep.umn.edu>

	* ParticleTransportSim/macro/PTSim_testG4.C:


	Add StdHep configuration options to script.  Disable StdHepSaveSibling
	because this isn't currently supported by PTSim w/G4 because of the
	way VMC w/G4 pushes secondaries to stack.

2007-05-07 03:58  Sue Kasahara <schubert@hep.umn.edu>

	* ParticleTransportSim/macro/PTSim_testG3.C:


	Replace use of std::ostringstream with function "itostr".

2007-05-07 03:57  Sue Kasahara <schubert@hep.umn.edu>

	* ParticleTransportSim/: PTSimApplication.cxx, PTSimStack.cxx,
	  PTSimStack.h:


	Revise stack & particle classes to be able to deal with VMC w/G4.  VMC w/G4
	pushes children of tracked particles to stack in non-sequential order,
	such that the children of a particle can't be identified by specifying a
	range of id's in the stack.
	MCAppParticle now stores the pointers to its children
	and parent(s) directly during tracking, and at the end of the event
	PTSimStack now re-sorts the particles before pushing them to the output
	stdhep array of TParticles so that the children of tracked particles
	are in the expected sequential order in this output array, and can
	be identified by a range of id's.

2007-05-07 03:50  Sue Kasahara <schubert@hep.umn.edu>

	* MCApplication/: MCAppParticle.cxx, MCAppParticle.h,
	  MCAppStack.cxx:


	Revise stack & particle classes to be able to deal with VMC w/G4.  VMC w/G4
	pushes children of tracked particles to stack in non-sequential order,
	so that the children of a particle can't be identified by specifying a
	range of id's in the stack.
	MCAppParticle now stores the pointers to its children
	and parent(s) directly.

2007-05-07 00:57  scavan

	* Production/Cedar_phy/untested_reco_MC_near_cosmic_cedar_phy.C:

	was incorrectly writing CandA and ntupleStA root files
	now writes CandS and ntupleStS root files
	(MC is "spill")

2007-05-07 00:51  scavan

	* Production/Cedar_phy/reco_MC_far_cosmic_cedar_phy.C:

	output files were incorrectly CandA.root and ntupleStA.root

	they are now changed to CandS.root and ntupleStS.root
	(MC is "spill" category)

2007-05-06 22:01  Sue Kasahara <schubert@hep.umn.edu>

	* setup/packages-S07-05-06-R1-25:

	First commit