SeaDAS>
unix cmd =
$SEADAS/scripts/modis_L1A_to_GEO.csh /home/xpan/bin/A2005147172500.L1A_LAC.x.hdf -o /home/xpan/bin/A2005147172500.GEO -geocheck_threshold 95
Level 1A input filename: A2005147172500.L1A_LAC.x.hdf
Output geolocation file: /home/xpan/bin/A2005147172500.GEO
Satellite: aqua
Year: 2005  Day: 147  Hour: 17  Minute: 25

*Terrain Correction Enabled*

Determining required definitive attitude and ephemeris files...
/data/seadas5.2/scripts/modis_definitive_atteph.csh aqua 2005147172500 2005147173000

Checking local hard disk for required definitive attitude and ephemeris files...
Present on hard disk: PM1ATTNR.P2005147.1600.002
Present on hard disk: PM1EPHND.P2005147.1200.001

All required definitive attitude and ephemeris files found on your hard disk.

att_file1: /home/xpan/.seadas/atteph/2005/147/PM1ATTNR.P2005147.1600.002
att_file2: NULL
eph_file1: /home/xpan/.seadas/atteph/2005/147/PM1EPHND.P2005147.1200.001
eph_file2: NULL

Wed May 21 14:09:02 EDT 2008
Creating MODIS geolocation file...
/data/seadas5.2/bin/geogen_modis
GEO version: 5.0.6 built on Mar 31 2008 (13:50:29)
scan: 0 out of 132 Wed May 21 14:09:03 2008
scan: 10 out of 132 Wed May 21 14:09:04 2008
scan: 20 out of 132 Wed May 21 14:09:05 2008
scan: 30 out of 132 Wed May 21 14:09:06 2008
scan: 40 out of 132 Wed May 21 14:09:08 2008
scan: 50 out of 132 Wed May 21 14:09:09 2008
scan: 60 out of 132 Wed May 21 14:09:10 2008
scan: 70 out of 132 Wed May 21 14:09:11 2008
scan: 80 out of 132 Wed May 21 14:09:13 2008
scan: 90 out of 132 Wed May 21 14:09:14 2008
scan: 100 out of 132 Wed May 21 14:09:16 2008
scan: 110 out of 132 Wed May 21 14:09:17 2008
scan: 120 out of 132 Wed May 21 14:09:19 2008
scan: 130 out of 132 Wed May 21 14:09:20 2008
geogen_modis exit status: 0
Wed May 21 14:09:21 EDT 2008

Running validation test on geolocation file...
/data/seadas5.2/scripts/modis_geocheck.csh /home/xpan/bin/A2005147172500.GEO 95
Number of pixels with missing geolocation: 0
Percent of geolocated pixels (rounded): 100
Validation test passed for geolocation file A2005147172500.GEO.

SeaDAS>
unix cmd =
$SEADAS/scripts/modis_L1A_to_L1B.csh /home/xpan/bin/A2005147172500.L1A_LAC.x.hdf /home/xpan/bin/A2005147172500.GEO -o /home/xpan/bin/A2005147172500.L1B_LAC -h /home/xpan/bin/A2005147172500.L1B_HKM -q /home/xpan/bin/A2005147172500.L1B_QKM -rlut /data/seadas5.2/data/modisa/cal/MYD02_Reflective_LUTs.V5.0.35.1a.hdf -elut /data/seadas5.2/data/modisa/cal/MYD02_Emissive_LUTs.V5.0.35.1a.hdf -qlut /data/seadas5.2/data/modisa/cal/MYD02_QA_LUTs.V5.0.35.1a.hdf -delete-hkm -delete-qkm

L1A filename: A2005147172500.L1A_LAC.x.hdf
GEO filename: A2005147172500.GEO
L1B 1KM filename: /home/xpan/bin/A2005147172500.L1B_LAC
L1B HKM filename: /home/xpan/bin/A2005147172500.L1B_HKM
L1B QKM filename: /home/xpan/bin/A2005147172500.L1B_QKM

Reflective LUT file: /data/seadas5.2/data/modisa/cal/MYD02_Reflective_LUTs.V5.0.35.1a.hdf
Emissive LUT file: /data/seadas5.2/data/modisa/cal/MYD02_Emissive_LUTs.V5.0.35.1a.hdf
QA LUT file: /data/seadas5.2/data/modisa/cal/MYD02_QA_LUTs.V5.0.35.1a.hdf

Satellite: aqua
Year: 2005  Day: 147  Hour: 17  Minute: 25

Wed May 21 14:09:39 EDT 2008
Processing MODIS L1A file to L1B...
/data/seadas5.2/bin/l1bgen_modisa
MYD_PR02 version 5.0.7 built on Mar 31 2008, at 13:50:20
scan: 0 out of 132 Wed May 21 14:09:41 2008
scan: 10 out of 132 Wed May 21 14:09:43 2008
scan: 20 out of 132 Wed May 21 14:09:44 2008
scan: 30 out of 132 Wed May 21 14:09:50 2008
scan: 40 out of 132 Wed May 21 14:09:51 2008
scan: 50 out of 132 Wed May 21 14:09:52 2008
scan: 60 out of 132 Wed May 21 14:09:52 2008
scan: 70 out of 132 Wed May 21 14:09:53 2008
scan: 80 out of 132 Wed May 21 14:09:54 2008
scan: 90 out of 132 Wed May 21 14:09:55 2008
scan: 100 out of 132 Wed May 21 14:09:55 2008
scan: 110 out of 132 Wed May 21 14:09:58 2008
scan: 120 out of 132 Wed May 21 14:09:59 2008
scan: 130 out of 132 Wed May 21 14:10:00 2008
l1bgen_modisa exit status: 0
Wed May 21 14:10:00 EDT 2008

MODIS L1B processing complete.
SeaDAS>
Detected a low-resolution file.
Detected a MODIS subscene.
Resetting ctl_pt_incr to 1.
***************************************************************************
Executing: $SEADAS/scripts/ms_met.csh /home/xpan/bin/A2005147172500.L1B_LAC
Determining pass start and end times..

Input file : /home/xpan/bin/A2005147172500.L1B_LAC
Start time : 2005147172510
End time   : 2005147173010

*All required files listed in LUT*

All optimal MET files found on hard disk:

MET1: S200514712_NCEP.MET (optimal)
MET2: S200514718_NCEP.MET (optimal)
MET3: S200514718_NCEP.MET (optimal)

***************************************************************************
Executing: $SEADAS/scripts/ms_ozone.csh /home/xpan/bin/A2005147172500.L1B_LAC
Determining pass start and end times..

Input file : /home/xpan/bin/A2005147172500.L1B_LAC
Start time : 2005147172510
End time   : 2005147173010

Parsing OZONE LUT file /data/seadas5.2/var/metoz/OZONE_EPTOMS_LUT.txt
*All required files listed in LUT*

All optimal OZONE (EPTOMS) files found on hard disk:

OZONE1: S200514712_EPTOMS.OZONE (optimal)
OZONE2: S200514812_EPTOMS.OZONE (optimal)
OZONE3: S200514812_EPTOMS.OZONE (optimal)

***************************************************************************
Executing: $SEADAS/scripts/ms_oisst.csh /home/xpan/bin/A2005147172500.L1B_LAC
Determining pass start time..

Input file : /home/xpan/bin/A2005147172500.L1B_LAC
Start time : 2005147172510

- Valid OISST file detected in OISST LUT file -

A valid OISST file was found on hard disk: oisst.20050525

SeaDAS>
Created L2GEN parameter file: /home/xpan/bin/A2005147172500.L2_LAC.par
UNIX command: /bin/bash -c "l2gen par=/home/xpan/bin/A2005147172500.L2_LAC.par"
Input file /home/xpan/bin/A2005147172500.L1B_LAC is MODIS Aqua Level-1B HDF-EOS product.
Loading default parameters for MODISA from /data/seadas5.2/data/modisa/msl12_defaults.par

Loading user parameters for MODISA

Opening filter file /data/seadas5.2/data/modisa/msl12_filter.dat
Setting 7 x 5 straylight filter on HILT mask

Filter Kernel
1 1 1 1 1 1 1
1 1 1 1 1 1 1
1 1 1 1 1 1 1
1 1 1 1 1 1 1
1 1 1 1 1 1 1

Minimum fill set to 1 pixels

Setting 7 x 5 straylight filter on CLDICE mask

Filter Kernel
1 1 1 1 1 1 1
1 1 1 1 1 1 1
1 1 1 1 1 1 1
1 1 1 1 1 1 1
1 1 1 1 1 1 1

Minimum fill set to 1 pixels

Loading characteristics for MODISA
Opening sensor information file /data/seadas5.2/data/modisa/msl12_sensor_info.dat
  Bnd   Lam       Fo    Tau_r     k_oz    k_no2    t_co2   awhite       aw      bbw
    0   412  172.718 3.109e-01 2.440e-03 5.732e-19 1.000e+00 1.000e+00 2.027e-02 3.242e-03
    1   443  187.688 2.375e-01 3.830e-03 4.916e-19 1.000e+00 1.000e+00 1.110e-02 2.454e-03
    2   488  194.973 1.596e-01 2.250e-02 2.802e-19 1.000e+00 1.000e+00 1.677e-02 1.622e-03
    3   531  185.820 1.131e-01 6.630e-02 1.437e-19 1.000e+00 1.000e+00 4.496e-02 1.132e-03
    4   551  186.594 9.940e-02 8.360e-02 1.124e-19 1.000e+00 1.000e+00 5.492e-02 9.890e-04
    5   667  152.163 4.460e-02 4.850e-02 8.000e-21 1.000e+00 8.892e-01 4.920e-01 4.262e-04
    6   678  148.097 4.160e-02 3.950e-02 8.500e-21 1.000e+00 8.892e-01 5.118e-01 3.968e-04
    7   748  128.123 2.860e-02 1.190e-02 1.500e-21 1.000e+00 7.600e-01 2.801e+00 2.671e-04
    8   869   95.849 1.550e-02 2.630e-03 0.000e+00 1.000e+00 6.449e-01 4.727e+00 1.404e-04

  Bnd   Lam
    9  3750
   10  3959
   11  4050
   12  6715
   13  7325
   14  8550
   15 11000
   16 12000

Calibration to be applied:
Calfile:
Vicarious Gain[1]=0.971000, Offset[1]=0.000000
Vicarious Gain[2]=0.984800, Offset[2]=0.000000
Vicarious Gain[3]=0.979500, Offset[3]=0.000000
Vicarious Gain[4]=0.987000, Offset[4]=0.000000
Vicarious Gain[5]=0.985000, Offset[5]=0.000000
Vicarious Gain[6]=0.979700, Offset[6]=0.000000
Vicarious Gain[7]=0.977600, Offset[7]=0.000000
Vicarious Gain[8]=0.985500, Offset[8]=0.000000
Vicarious Gain[9]=1.000000, Offset[9]=0.000000

Input file /home/xpan/bin/A2005147172500.L1B_LAC is MODIS Aqua Level-1B HDF-EOS product.
File contains rescaled RGBN data.
File was generated from L1A extract of size 848 x 1320
  Pixels 495 - 1342
  Lines  371 - 1690

Opening: /home/xpan/bin/A2005147172500.L2_LAC

The following products will be included in /home/xpan/bin/A2005147172500.L2_LAC.
0 chlor_a
1 K_490
2 tau_869
3 eps_78
4 angstrom_531
5 nLw_412
6 nLw_443
7 nLw_488
8 nLw_531
9 nLw_551
10 nLw_667
11 sst
12 l2_flags

Begin MSl12 Version 5.8.3 Processing
Sensor is MODISA
Sensor ID is 6
Sensor has 9 reflective bands
Sensor has 8 emmissive bands
Number of along-track detectors per band is 10
Number of input pixels per scan is 848
Processing pixels 1 to 848 by 1
Processing scans 1 to 1320 by 1
Ocean processing enabled
Land processing disabled
Atmospheric correction enabled

Begin MSl12 processing at 2008142141038000

Radiance to brightness temperature loaded from /data/seadas5.2/data/modisa/cal/bt_modisa.hdf
Loading land mask file from /data/seadas5.2/data/common/landmask.dat
Loading bathymetry mask file from /data/seadas5.2/data/common/watermask.dat
Loading ice mask file from /data/seadas5.2/data/common/ice_mask.hdf
Reading Thuillier_F0.dat
Loading OI Reynolds SST reference from /home/xpan/.seadas/oisst/2005/oisst.20050525
  file start date (y/m/d): 2005 / 5 / 22
  file end   date (y/m/d): 2005 / 5 / 28
  days composited: 7
  file version: 1112100345

Opening meteorological files.
  met1   = /home/xpan/.seadas/metoz/2005/147/S200514712_NCEP.MET
  met2   = /home/xpan/.seadas/metoz/2005/147/S200514718_NCEP.MET
  met3   = /home/xpan/.seadas/metoz/2005/147/S200514718_NCEP.MET
  ozone1 = /home/xpan/.seadas/metoz/2005/147/S200514712_EPTOMS.OZONE
  ozone2 = /home/xpan/.seadas/metoz/2005/148/S200514812_EPTOMS.OZONE
  ozone3 = /home/xpan/.seadas/metoz/2005/148/S200514812_EPTOMS.OZONE
  no2    = /data/seadas5.2/data/common/no2_climatology.hdf

Loading Rayleigh coefficients from /data/seadas5.2/data/modisa/rayleigh/rayleigh_modisa_412_iqu.hdf
Loading Rayleigh coefficients from /data/seadas5.2/data/modisa/rayleigh/rayleigh_modisa_443_iqu.hdf
Loading Rayleigh coefficients from /data/seadas5.2/data/modisa/rayleigh/rayleigh_modisa_488_iqu.hdf
Loading Rayleigh coefficients from /data/seadas5.2/data/modisa/rayleigh/rayleigh_modisa_531_iqu.hdf
Loading Rayleigh coefficients from /data/seadas5.2/data/modisa/rayleigh/rayleigh_modisa_551_iqu.hdf
Loading Rayleigh coefficients from /data/seadas5.2/data/modisa/rayleigh/rayleigh_modisa_667_iqu.hdf
Loading Rayleigh coefficients from /data/seadas5.2/data/modisa/rayleigh/rayleigh_modisa_678_iqu.hdf
Loading Rayleigh coefficients from /data/seadas5.2/data/modisa/rayleigh/rayleigh_modisa_748_iqu.hdf
Loading Rayleigh coefficients from /data/seadas5.2/data/modisa/rayleigh/rayleigh_modisa_869_iqu.hdf
Loading polarization file /data/seadas5.2/data/modisa/cal/polcor_modisa_412.hdf
Loading polarization file /data/seadas5.2/data/modisa/cal/polcor_modisa_443.hdf
Loading polarization file /data/seadas5.2/data/modisa/cal/polcor_modisa_488.hdf
Loading polarization file /data/seadas5.2/data/modisa/cal/polcor_modisa_531.hdf
Loading polarization file /data/seadas5.2/data/modisa/cal/polcor_modisa_551.hdf
Loading polarization file /data/seadas5.2/data/modisa/cal/polcor_modisa_667.hdf
Loading polarization file /data/seadas5.2/data/modisa/cal/polcor_modisa_678.hdf
Loading polarization file /data/seadas5.2/data/modisa/cal/polcor_modisa_748.hdf
Loading polarization file /data/seadas5.2/data/modisa/cal/polcor_modisa_869.hdf
Processing scan #     0 (1 of 1320) after      0 seconds

Loading SSES table for sst from /data/seadas5.2/data/modisa/cal/sst_sses_modisa.hdf

Loading SSES table for sst4 from /data/seadas5.2/data/modisa/cal/sst4_sses_modisa.hdf
Loading SST4 coefficients from /data/seadas5.2/data/modisa/cal/sst4_modisa.dat:
2005121 2005151  0.677  1.026  0.469  1.470

Loading SST coefficients from /data/seadas5.2/data/modisa/cal/sst_modisa.dat:
2005121 2005151  1.216  0.942  0.175  1.759
2005121 2005151  2.405  0.909  0.125  1.163

Aerosol selection bands 748 and 869
NIR correction enabled.

Using Gordon & Wang aerosol model selection
  and NIR correction with up to 10 iterations
Using bands at 748.0 and 869.0 nm for model selection
Extrapolating from 869.0 nm

Loading o99 aerosol models from /data/seadas5.2/data/modisa/aerosol/aerosol_modisa_o99.hdf
Loading m50 aerosol models from /data/seadas5.2/data/modisa/aerosol/aerosol_modisa_m50.hdf
Loading m70 aerosol models from /data/seadas5.2/data/modisa/aerosol/aerosol_modisa_m70.hdf
Loading m90 aerosol models from /data/seadas5.2/data/modisa/aerosol/aerosol_modisa_m90.hdf
Loading m99 aerosol models from /data/seadas5.2/data/modisa/aerosol/aerosol_modisa_m99.hdf
Loading c50 aerosol models from /data/seadas5.2/data/modisa/aerosol/aerosol_modisa_c50.hdf
Loading c70 aerosol models from /data/seadas5.2/data/modisa/aerosol/aerosol_modisa_c70.hdf
Loading c90 aerosol models from /data/seadas5.2/data/modisa/aerosol/aerosol_modisa_c90.hdf
Loading c99 aerosol models from /data/seadas5.2/data/modisa/aerosol/aerosol_modisa_c99.hdf
Loading t50 aerosol models from /data/seadas5.2/data/modisa/aerosol/aerosol_modisa_t50.hdf
Loading t90 aerosol models from /data/seadas5.2/data/modisa/aerosol/aerosol_modisa_t90.hdf
Loading t99 aerosol models from /data/seadas5.2/data/modisa/aerosol/aerosol_modisa_t99.hdf

M. Wang model cross-over correction enabled.

Loading water-vapor correction coefficients.

Applying ocean BRDF including:
    Reflection/refraction for upwelling radiance.
    Reflection/refraction for downwelling radiance.
    Morel f/Q

Loading Morel f/Q table from file /data/seadas5.2/data/common/morel_fq.dat
Processing scan #    50 (51 of 1320) after      3 seconds
Processing scan #   100 (101 of 1320) after      6 seconds
Processing scan #   150 (151 of 1320) after      9 seconds
Processing scan #   200 (201 of 1320) after     13 seconds
Processing scan #   250 (251 of 1320) after     17 seconds
Processing scan #   300 (301 of 1320) after     21 seconds
Processing scan #   350 (351 of 1320) after     24 seconds
Processing scan #   400 (401 of 1320) after     28 seconds
Processing scan #   450 (451 of 1320) after     31 seconds
Processing scan #   500 (501 of 1320) after     34 seconds
Processing scan #   550 (551 of 1320) after     38 seconds
Processing scan #   600 (601 of 1320) after     41 seconds
Processing scan #   650 (651 of 1320) after     44 seconds
Processing scan #   700 (701 of 1320) after     47 seconds
Processing scan #   750 (751 of 1320) after     50 seconds
Processing scan #   800 (801 of 1320) after     52 seconds
Processing scan #   850 (851 of 1320) after     53 seconds
Processing scan #   900 (901 of 1320) after     54 seconds
Processing scan #   950 (951 of 1320) after     55 seconds
Processing scan #  1000 (1001 of 1320) after     55 seconds
Processing scan #  1050 (1051 of 1320) after     56 seconds
Processing scan #  1100 (1101 of 1320) after     57 seconds
Processing scan #  1150 (1151 of 1320) after     57 seconds
Processing scan #  1200 (1201 of 1320) after     58 seconds
Processing scan #  1250 (1251 of 1320) after     58 seconds
Processing scan #  1300 (1301 of 1320) after     59 seconds

Percentage of pixels flagged:
Flag # 1:          ATMFAIL          4   0.0004
Flag # 2:             LAND     348856  31.1657
Flag # 3:            SPARE          0   0.0000
Flag # 4:          HIGLINT     550789  49.2057
Flag # 5:             HILT     879115  78.5373
Flag # 6:         HISATZEN      44880   4.0094
Flag # 7:           COASTZ      47384   4.2331
Flag # 8:            NEGLW       3334   0.2978
Flag # 9:       STRAYLIGHT     167325  14.9483
Flag #10:           CLDICE     466979  41.7184
Flag #11:        COCCOLITH       1189   0.1062
Flag #12:          TURBIDW       6912   0.6175
Flag #13:         HISOLZEN          0   0.0000
Flag #14:            HITAU      48315   4.3163
Flag #15:            LOWLW       1178   0.1052
Flag #16:          CHLFAIL     907268  81.0524
Flag #17:          NAVWARN          0   0.0000
Flag #18:           ABSAER      22437   2.0044
Flag #19:            SPARE          0   0.0000
Flag #20:       MAXAERITER        257   0.0230
Flag #21:         MODGLINT     722039  64.5046
Flag #22:          CHLWARN        102   0.0091
Flag #23:          ATMWARN       1998   0.1785
Flag #24:        DARKPIXEL          0   0.0000
Flag #25:           SEAICE      25862   2.3104
Flag #26:          NAVFAIL          0   0.0000
Flag #27:           FILTER          0   0.0000
Flag #28:          SSTWARN     586886  52.4305
Flag #29:          SSTFAIL     348856  31.1657
Flag #30:            HIPOL      10291   0.9194
Flag #31:         PRODFAIL     907268  81.0524
Flag #32:            OCEAN     303525  27.1159

End MSl12 processing at 2008142141137000
Processing Rate = 22.372881 scans/sec

Processing Completed