=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2615.2615.2.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2615.2615.2.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 01:18 PM, 0.3 sec. on pnode22.emsl.pnl.gov
 (M+H)+ mass = 1039.81300 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO
 total inten = 5485.6, lowest Sp = 160.9, # matched peptides = 66693
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 / 49          0 1042.21424  0.0000  1.5936   251.8  10/16  SO_2148    F.TQAKIDLPR.E
  2.   2 /456          0 1040.14874  0.0182  1.5646   163.9   8/16  SO_4480    V.ISVTTFKDE.A
  3.   3 / 85          0 1042.13288  0.0658  1.4887   228.6  10/16  SO_1168    F.SVNQHRFPG.I
  4.   4 /  2          0 1042.21424  0.0764  1.4718   412.7  12/16  SO_4456    A.VTVQLTQPR.S
  5.   5 /107          0 1041.22794  0.1148  1.4107   219.9  10/16  SO_3032    S.YKLAHQAIP.A
  6.   6 /204          0 1041.22947  0.1231  1.3974   195.1  11/20  SO_0615    A.ISVAGGVRPGK.I
  7.   7 / 56          0 1041.14320  0.1282  1.3894   244.4  11/18  SO_1171    E.LSARHASIDA.L
  8.   8 / 69          0 1042.21747  0.1484  1.3571   238.5  10/18  SO_2233    R.LAGIALRGDR.A
  9.   9 /149          0 1040.10561  0.1628  1.3342   205.9   9/18  SO_2119    K.SISSYPELSG.R
 10.  10 /205          0 1042.14500  0.1816  1.3042   194.8   9/16  SO_0174    S.YSEMQLDGV.E

 97.  97 /  1          0 1042.21101  0.4150  0.9323   508.4  14/18  SO_0185    S.VSLVTNQLPA.H

  1.          0  SO_2148 exodeoxyribonuclease V, beta subunit (RecB) 
  2.          0  SO_4480 aldehyde dehydrogenase, AldA 
  3.          0  SO_1168 penicillin-binding protein 2 (MrdA) 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2615.2615.3.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2615.2615.3.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 09:32 AM, 0.4 sec. on pnode18.emsl.pnl.gov
 (M+H)+ mass = 1559.21600 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO
 total inten = 5484.3, lowest Sp = 194.8, # matched peptides = 74785
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 /265          0 1561.67474  0.0000  2.0058   215.9  17/60  SO_0189    N.GVAYTFTVTATNSAGT.G
  2.   2 / 53          0 1560.69152  0.0324  1.9408   269.1  20/56  SO_0174    S.GELANAQGLSTLTER.A
  3.   3 /  3          0 1558.84664  0.0344  1.9367   363.7  20/56  SO_2606    A.LGAWLGIKSIKESGV.E
  4.   4 / 55          0 1559.66425  0.0936  1.8180   267.6  18/60  SO_3127    E.GEGSDTACPQAMPAHS.L
  5.   5 /333          0 1556.89738  0.1193  1.7665   209.8  15/48  SO_1925    R.LKAGMFTRVELKY.D
  6.   6 /309          0 1561.71788  0.1258  1.7534   212.1  15/52  SO_0780    G.SYTVGITEHAQELL.G
  7.   7 /165          0 1558.67731  0.1351  1.7347   231.8  17/52  SO_0614    P.IAYERSSPIEHAQG.L
  8.   8 /  4          0 1556.65973  0.1452  1.7144   361.0  21/60  SO_0397    L.IGSAPETIGPQGSADR.I
  9.   9 /437          0 1561.71942  0.1455  1.7138   199.6  19/68  SO_2465    N.GIATGVALGNATVTASGT.T
 10.  10 /  2          0 1561.76102  0.1507  1.7034   373.8  19/52  SO_1849    A.DLPLVLAVRAYSED.L

 16.  16 /  1          0 1557.73246  0.1850  1.6347   399.1  20/52  SO_1408    R.NQALQWLAQGSIEV.I

  1.          0  SO_0189 Ca binding surface adhesin 
  2.          0  SO_0174 general secretion pathway protein, GspL 
  3.          0  SO_2606 PqiB family protein 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2616.2616.1.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2616.2616.1.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 02:43 PM, 0.3 sec. on pnode19.emsl.pnl.gov
 (M+H)+ mass = 678.47000 ~ 3.0000 (+1), fragment tol = 0.0000 , AVG/MONO
 total inten = 5402.5, lowest Sp = 411.6, # matched peptides = 78240
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference     Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------     -------
  1.   1 / 15          0  678.75631  0.0000  1.9661   622.7   8/10  SO_3525       G.FVDLGQ.T
  2.   2 / 19          0  677.77154  0.0010  1.9641   604.9   8/10  SO_1174       A.FNVIAN.K
  3.   3 /  7          0  677.77154  0.0245  1.9179   667.0   9/12  SO_1484       G.FGGVLNA.F
  4.   4 / 40          0  677.79335  0.0365  1.8943   548.8   8/10  SO_0063       L.MNDLGK.K
  5.   5 /118          0  677.75021  0.0525  1.8628   442.6   8/12  SO_4598       I.GGMDIGQ.S
  6.   6 / 19          0  677.79012  0.0543  1.8594   604.9   8/10  SO_1831   +1  E.MALVDE.T
                       0  SO_4354 conserved hypothetical cyt
  7.   7 / 23          0  678.71640  0.0544  1.8592   587.2   8/10  SO_2940       S.NFVNGQ.S
  8.   8 / 19          0  677.83649  0.0550  1.8580   604.9   8/10  SO_2618       V.MALTNK.L
  9.   9 /155          0  678.79944  0.0618  1.8445   411.6   7/10  SO_2047       G.VYVLAN.I
 10.  10 / 59          0  678.75631  0.0660  1.8364   513.3   8/10  SO_2098       N.DFVLAN.G

113. 112 /  1          0  680.83884  0.2790  1.4175   948.8  10/12  SO_3159       D.FGGVGLM.Q

  1.          0  SO_3525 type IV pilin biogenesis protein 
  2.          0  SO_1174 leucyl-tRNA synthetase (LeuS) 
  3.          0  SO_1484 isocitrate lyase, AceA 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2618.2618.2.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2618.2618.2.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 01:18 PM, 0.3 sec. on pnode22.emsl.pnl.gov
 (M+H)+ mass = 1334.05200 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO
 total inten = 6655.1, lowest Sp = 209.8, # matched peptides = 74121
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 / 42          0 1334.41662  0.0000  2.2976   338.0  13/26  SO_2016    R.FASTHTGSAAPTVS.L
  2.   2 / 18          0 1334.36856  0.2081  1.8194   393.4  14/26  SO_3069    I.DSTDADLAAAIAAE.L
  3.   3 / 36          0 1334.41493  0.2432  1.7388   344.3  11/28  SO_0682    L.VESSAAAAAGDSVAK.F
  4.   4 /152          0 1335.47126  0.2675  1.6830   271.9   9/22  SO_1332    M.GYHQLSMNQGSL.A
  5.   5 /112          0 1335.40462  0.2687  1.6803   285.8  10/26  SO_2857    G.FGAQLLDAAGNNSG.V
  6.   6 / 44          0 1334.49967  0.2938  1.6225   335.0   9/22  SO_3422    T.EEKPGFKIEASV.G
  7.   7 /166          0 1332.53232  0.3059  1.5948   267.9  10/24  SO_4233    T.CHTGLAVMIDSAN.I
  8.   8 /144          0 1335.44775  0.3072  1.5918   274.5   9/22  SO_3067    A.FEQIEAARGNIS.L
  9.   9 /165          0 1332.48854  0.3082  1.5894   268.0  10/22  SO_2216    F.SDVSERKKAAQL.I
 10.  10 /161          0 1335.70230  0.3084  1.5889   268.9  10/24  SO_3046    W.IVCSMVALITATI.A

146. 146 /  1          0 1336.58543  0.5056  1.1359   538.2  12/22  SO_1691    V.IQQFVDMAKAKG.F

  1.          0  SO_2016 heat shock protein (HtpG) 
  2.          0  SO_3069 expressed inner membrane protein of unknown function 
  3.          0  SO_0682 prophage MuSo1 hypothetical protein 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2618.2618.3.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2618.2618.3.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 02:50 PM, 0.6 sec. on pnode20.emsl.pnl.gov
 (M+H)+ mass = 2000.57500 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO
 total inten = 6655.9, lowest Sp = 236.6, # matched peptides = 71908
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 / 24          0 2000.19801  0.0000  2.1202   380.2  19/64  SO_2638    S.FEKDYDAAKSEAKVREI.Y
  2.   2 /  8          0 2003.20513  0.0418  2.0315   440.7  20/68  SO_4439    E.IYQNGQLINSQQINAGLQ.A
  3.   3 / 31          0 2003.29140  0.0441  2.0267   369.7  21/76  SO_2510    H.LPVHAPTSGAVVAIELRASN.H
  4.   4 /197          0 1998.05101  0.0601  1.9927   278.7  15/72  SO_4208    P.ANSDEALHEVALDIQEGAD.M
  5.   5 / 22          0 1998.19011  0.0673  1.9775   392.4  19/72  SO_1101    Q.AQDIARNIIAAGVSVNRND.D
  6.   6 /107          0 2003.24180  0.0711  1.9694   303.8  18/68  SO_2975    H.FENQIEKLINDVLGVDVG.D
  7.   7 /111          0 2003.16030  0.1159  1.8744   301.6  18/68  SO_1500    L.DVTAQTLADREVLASREQ.L
  8.   8 / 11          0 2002.26027  0.1454  1.8119   434.7  21/72  SO_2492    M.AIGQFEGVQEALARIIANT.Y
  9.   9 / 75          0 2003.20513  0.1494  1.8034   327.9  16/64  SO_3193    L.PSAVFVRESVRQQEQIE.I
 10.  10 /  2          0 2003.11070  0.1542  1.7932   494.7  22/76  SO_4265    W.LKDSNSVDAADLGTPEELAG.E

215. 215 /  1          0 2003.26361  0.4698  1.1242   560.5  24/80  SO_3089    I.MTGNIEIGIAGGADSSSVLPI.G

  1.          0  SO_2638 leucine dehydrogenase, Ldh 
  2.          0  SO_4439 fimbrial usher protein 
  3.          0  SO_2510 NADH:ubiquinone oxidoreductase subunit, RnfC 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2619.2619.2.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2619.2619.2.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 01:55 PM, 0.4 sec. on pnode21.emsl.pnl.gov
 (M+H)+ mass = 1258.15100 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO
 total inten = 4177.6, lowest Sp = 148.4, # matched peptides = 75218
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 / 47          0 1259.39119  0.0000  1.8394   224.6  11/22  SO_0204    S.VQASNIGVEVKD.G
  2.   2 /128          0 1256.43044  0.0531  1.7417   196.1  10/20  SO_0059    D.EQQLIKTEPGL.G
  3.   3 /101          0 1256.39700  0.1520  1.5599   202.2  10/22  SO_3479    E.ASARNGSRPQVL.I
  4.   4 / 53          0 1259.47593  0.1604  1.5444   222.4  12/22  SO_0296    W.LDSLSWLGAALI.V
  5.   5 / 34          0 1256.43690  0.1605  1.5441   236.8  10/18  SO_0850    S.LRDNLVQERL.S
  6.   6 /285          0 1257.51117  0.1676  1.5310   168.1   9/20  SO_3230    E.VERLGGRKTIK.L
  7.   7 /  2          0 1255.44737  0.1800  1.5083   349.8  13/22  SO_A0100   G.KTLIPGFIDGHG.H
  8.   8 / 58          0 1256.39054  0.1802  1.5079   220.8  10/20  SO_4658    H.NRDEPKLDGIV.V
  9.   9 /416          0 1257.50471  0.2185  1.4375   153.8  10/22  SO_1393    L.LKEGAIVSAQLK.G
 10.  10 / 15          0 1256.58982  0.2342  1.4086   253.7  10/18  SO_2384    F.MRDKLKVRLP.F

107. 107 /  1          0 1255.49220  0.4127  1.0803   366.1  13/20  SO_3222    M.PRPFLFNLPGP.D

  1.          0  SO_0204 hypothetical tri-BON domain protein 
  2.          0  SO_0059 two component transcriptional regulator, Winged helix family 
  3.          0  SO_3479 pseudogene: type IV pilin biogenesis protein, interruption 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2619.2619.3.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2619.2619.3.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 01:55 PM, 0.5 sec. on pnode21.emsl.pnl.gov
 (M+H)+ mass = 1886.72200 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO
 total inten = 4177.6, lowest Sp = 178.4, # matched peptides = 72343
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 / 43          0 1884.04710  0.0000  2.3264   279.6  19/60  SO_4557    V.RVLSRRTQDSTQEVHA.T
  2.   2 /313          0 1888.15394  0.0898  2.1174   195.2  20/72  SO_0947    H.LATDQGLNIAIITGGVPYA.P
  3.   3 /285          0 1885.13211  0.1224  2.0417   199.2  18/60  SO_1599    P.AAKPCIWNYQDLVEYA.E
  4.   4 /187          0 1884.16360  0.1290  2.0262   213.7  20/68  SO_0381    L.AKPVSEQINDTTLVALAL.L
  5.   5 /398          0 1884.17006  0.1940  1.8750   186.4  18/68  SO_0916    C.IIRVASATDDAAIAQVIR.D
  6.   6 /186          0 1885.32583  0.1942  1.8746   213.9  18/64  SO_0621    S.IRTKLSLWLTGLLVLGT.V
  7.   7 /  7          0 1884.03434  0.2043  1.8512   354.5  22/60  SO_1570    R.WVVDASNSIIESVDYW.L
  8.   8 /318          0 1885.24665  0.2145  1.8274   194.8  16/60  SO_0476    P.KPRVMTGFIEMQYARG.I
  9.   9 /172          0 1885.18647  0.2255  1.8019   216.1  18/64  SO_1994    S.HAAAFPTCVTNLQKRAR.R
 10.  10 /190          0 1886.09491  0.2369  1.7753   213.5  20/64  SO_3088    R.VKDINEKGLSNALSYAY.K

206. 206 /  1          0 1886.13958  0.5098  1.1403   473.2  24/64  SO_2047    F.DTLVANSLAILNDKERI.P

  1.          0  SO_4557 methyl-accepting chemotaxis protein with Cache sensory domain 
  2.          0  SO_0947 ATP-dependent RNA helicase (SrmB) 
  3.          0  SO_1599 multi-domain beta-ketoacyl synthase (PfaC) 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2620.2620.2.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2620.2620.2.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 03:10 PM, 0.3 sec. on pnode17.emsl.pnl.gov
 (M+H)+ mass = 1036.24800 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO
 total inten = 4978.2, lowest Sp = 132.5, # matched peptides = 70515
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 / 55          0 1036.16332  0.0000  1.6200   195.7   9/18  SO_3514    P.FKASQADLGV.E
  2.   2 / 16          0 1036.20815  0.0400  1.5552   231.9   7/14  SO_1758    E.FQFLDPLR.H
  3.   3 / 65          0 1037.19769  0.1096  1.4425   188.5   7/14  SO_1255    S.QEQLLHLR.G
  4.   4 / 10          0 1037.22119  0.1461  1.3832   250.1   7/14  SO_3311    R.RMYSNPLR.V
  5.   5 /140          0 1036.20323  0.1498  1.3774   169.4   8/16  SO_1757    A.DKVEIYIGV.L
  6.   6 / 38          0 1034.23371  0.1552  1.3686   206.0   8/16  SO_2593    D.FRTEVLGLV.K
  7.   7 /203          0 1037.24405  0.1557  1.3677   158.2   8/16  SO_3547    K.RAVLHTALR.N
  8.   8 / 58          0 1035.22016  0.1714  1.3424   194.3   7/16  SO_2900    Y.QFFINPLGV.Q
  9.   9 / 96          0 1035.19714  0.1783  1.3311   179.1   7/16  SO_A0031   F.CALDVKEKE.K
 10.  10 /163          0 1038.18568  0.2184  1.2662   163.8   7/16  SO_4073    P.KKGKGSYNR.K

 27.  27 /  1          0 1037.17482  0.2910  1.1486   448.3  11/16  SO_0790    W.CADNPTFIR.K

  1.          0  SO_3514 outer membrane transporter for chitooligosaccharides, TonB-dependent 
  2.          0  SO_1758 transcriptional regulator-like protein 
  3.          0  SO_1255 bifunctional diguanylate cyclase/signalling protein with EAL domain 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2620.2620.3.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2620.2620.3.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 03:10 PM, 0.4 sec. on pnode17.emsl.pnl.gov
 (M+H)+ mass = 1553.86800 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO
 total inten = 5034.6, lowest Sp = 192.4, # matched peptides = 70991
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 / 72          0 1552.88846  0.0000  1.9730   265.0  15/48  SO_0038    T.VVKAFLLDLQHRI.C
  2.   2 / 73          0 1556.66142  0.0391  1.8959   263.6  15/48  SO_4543    K.NQALFSQQVYSDR.Y
  3.   3 / 48          0 1553.91467  0.0513  1.8717   278.0  18/60  SO_0262    V.LSLLGAIGVALTVGLR.K
  4.   4 /121          0 1556.65973  0.0676  1.8396   243.2  15/52  SO_4149    L.PQQADETQTKNAPK.F
  5.   5 /168          0 1555.74653  0.1043  1.7672   233.1  13/44  SO_3004    K.TWRGERMSYVNR.D
  6.   6 /172          0 1551.77259  0.1055  1.7648   232.2  14/48  SO_0644    D.RITVADDLLEHIR.K
  7.   7 /  2          0 1556.01207  0.1115  1.7530   383.6  19/56  SO_0478    S.ILSLLVIFVGAALLI.F
  8.   8 / 61          0 1556.78760  0.1542  1.6687   272.1  16/52  SO_4047    N.PEQAYLTPRPLSAI.P
  9.   9 /482          0 1554.72688  0.1780  1.6218   193.8  15/56  SO_3287    E.LGDVAPDLDDAALLR.G
 10.  10 / 17          0 1552.84040  0.1791  1.6197   319.9  18/56  SO_3855    L.LDVVNNAKPTVLIGV.S

 94.  94 /  1          0 1553.65584  0.4034  1.1772   449.7  19/56  SO_0867    N.ENSVAIPDNNPNGVI.S

  1.          0  SO_0038 coproporphyrinogen III oxidase, aerobic, HemF 
  2.          0  SO_4543 periplasmic esterase 
  3.          0  SO_0262 ABC heme exporter, inner membrane subunit, CcmB 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2621.2621.2.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2621.2621.2.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 09:32 AM, 0.3 sec. on pnode18.emsl.pnl.gov
 (M+H)+ mass = 813.09700 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO
 total inten = 4221.7, lowest Sp = 146.5, # matched peptides = 67506
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 / 68          0  810.96424  0.0000  1.6067   198.4   8/12  SO_4454    A.KGEVKLH.P
  2.   2 /140          0  810.92110  0.0512  1.5244   179.4   8/14  SO_1275    L.AGGKVHEL.G
  3.   3 / 28          0  813.87862  0.0944  1.4551   220.9   9/16  SO_2607    Q.QGAAAPADI.F
  4.   4 /291          0  815.93765  0.1011  1.4444   156.9   8/14  SO_1066    G.QSIAPKAT.K
  5.   5 /122          0  813.92499  0.1109  1.4285   183.3   8/14  SO_0779    V.QGPNAKAK.A
  6.   6 / 33          0  810.92279  0.1110  1.4283   218.2   8/12  SO_3097    H.ALAHVYH.E
  7.   7 / 27          0  813.91853  0.1112  1.4281   221.0   8/14  SO_3899    E.EGIPGVEL.I
  8.   8 / 53          0  811.99214  0.1157  1.4208   204.2   8/14  SO_1900    L.KGQVPLGL.V
  9.   9 /156          0  810.87796  0.1186  1.4162   176.9   8/14  SO_0610    A.AGGQVHLE.D
 10.  10 /263          0  811.99537  0.1220  1.4107   160.2   7/12  SO_3866    S.KGKTIKH.T

 37.  36 /  1          0  813.92822  0.2577  1.1927   276.4   8/12  SO_3651    V.KGPNNRK.F

  1.          0  SO_4454 methyl-accepting chemotaxis protein 
  2.          0  SO_1275 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase, PuuC 
  3.          0  SO_2607 spore maturation protein A-related protein 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2621.2621.3.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2621.2621.3.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 02:43 PM, 0.4 sec. on pnode19.emsl.pnl.gov
 (M+H)+ mass = 1219.14200 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO
 total inten = 4336.0, lowest Sp = 184.7, # matched peptides = 76285
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 /287          0 1220.46644  0.0000  1.5903   203.9  12/40  SO_3654    V.KAPPSLANMYK.E
  2.   2 / 19          0 1220.39980  0.0549  1.5030   293.0  15/40  SO_0538    T.KALLQAYLDQG.V
  3.   3 /255          0 1221.47253  0.0957  1.4381   208.8  14/40  SO_3541    V.ISLIVKSAFGW.Q
  4.   4 /446          0 1219.28885  0.1296  1.3842   188.3  11/36  SO_A0154   L.AESHQTQYRV.P
  5.   5 /  3          0 1221.37138  0.1479  1.3551   367.6  16/40  SO_2543    I.EQHNGCIALVH.T
  6.   6 /131          0 1216.40945  0.1528  1.3473   227.1  17/44  SO_0737    H.KADATSLVNLAL.G
  7.   7 / 82          0 1217.31286  0.1688  1.3219   243.2  15/44  SO_1204    G.EAGGITQHIGAY.H
  8.   8 / 48          0 1221.36969  0.1719  1.3170   260.9  15/40  SO_0072    T.RVAARTEAMES.G
  9.   9 /226          0 1221.38843  0.1853  1.2956   212.6  12/32  SO_3286    V.FNYETMRME.M
 10.  10 / 12          0 1217.37950  0.2006  1.2713   319.4  16/36  SO_0002    L.QANDMVKPQW.F

 15.  15 /  1          0 1219.41842  0.2350  1.2166   497.4  18/36  SO_4081    N.KGFGYVHPKW.R

  1.          0  SO_3654 uracil-DNA glycosylase, Ung 
  2.          0  SO_0538 glyceraldehyde 3-phosphate dehydrogenase family protein 
  3.          0  SO_3541 cation:alanine/glycine transporter, AGCS family 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2622.2622.1.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2622.2622.1.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 02:43 PM, 0.2 sec. on pnode19.emsl.pnl.gov
 (M+H)+ mass = 664.76900 ~ 3.0000 (+1), fragment tol = 0.0000 , AVG/MONO
 total inten = 4620.3, lowest Sp = 306.4, # matched peptides = 70284
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference     Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------     -------
  1.   1 /  6          0  664.75144  0.0000  1.0957   349.7   6/ 8  SO_3428       L.EKEMQ.Q
  2.   2 /  3          0  664.81591  0.0264  1.0667   359.3   6/ 8  SO_1627       I.EKFIK.A
  3.   2 /  3          0  664.77277  0.0264  1.0667   359.3   6/ 8  SO_1175   +2  V.EQFLK.R
                       0  SO_1604 4-prime-phosphopantetheiny
                       0  SO_3637 survival protein surA
  4.   2 /  3          0  664.77277  0.0264  1.0667   359.3   6/ 8  SO_1232       D.EKFIQ.G
  5.   3 /  6          0  664.79458  0.0312  1.0614   349.7   6/ 8  SO_3070       T.KEEMK.M
  6.   3 /  6          0  664.70830  0.0312  1.0614   349.7   6/ 8  SO_3892       S.QEEMQ.H
  7.   4 /  6          0  664.79458  0.0445  1.0469   349.7   6/ 8  SO_0220   +1  T.EKMEK.G
                       0  SO_4398 D-tyrosyl-tRNA(Tyr) deacyl
  8.   5 /  6          0  662.66891  0.0470  1.0442   349.7   6/ 8  SO_0059       D.QEEEK.I
  9.   6 /  3          0  664.81591  0.0577  1.0325   359.3   6/ 8  SO_1655   +1  T.KEFIK.R
                       0  SO_3509 N-acetyl-beta-D-glucosamin
 10.   6 /  3          0  664.72963  0.0577  1.0325   359.3   6/ 8  SO_1795   +1  Q.QEFLQ.V
                       0  SO_4626 carboxylesterase, BioH

 40.  17 /  1          0  665.71762  0.1087  0.9766   393.1   6/ 8  SO_3484       D.FKENQ.S

  1.          0  SO_3428 alanyl-tRNA synthetase 
  2.          0  SO_1627 methionyl aminopeptidase 1 (Map) 
  3.          0  SO_1175 expressed protein of unknown function DUF1451 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2623.2623.2.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2623.2623.2.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 01:18 PM, 0.4 sec. on pnode22.emsl.pnl.gov
 (M+H)+ mass = 1363.66200 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO
 total inten = 4112.8, lowest Sp = 132.9, # matched peptides = 72755
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 / 25          0 1366.50822  0.0000  1.9737   242.4  13/24  SO_3837    K.AAEALKEHGANRV.F
  2.   2 /332          0 1363.73383  0.1432  1.6910   146.8   9/22  SO_2151    S.ILLLSLFNTCIL.Y
  3.   3 / 15          0 1364.70478  0.1994  1.5801   266.0  11/22  SO_3665    A.RAILADRPILLL.D
  4.   4 /157          0 1361.57148  0.2117  1.5560   175.9  11/24  SO_1156    V.EILKGPGSALYGR.S
  5.   5 / 11          0 1365.68309  0.2270  1.5258   285.9  11/22  SO_4526    L.DLNLLPVLEILL.E
  6.   6 /163          0 1365.68309  0.2423  1.4956   173.9   9/22  SO_4526    H.LDLNLLPVLEIL.L
  7.   7 /204          0 1366.54813  0.2526  1.4751   165.5  10/22  SO_3874    I.NNNIKELSIAHL.Q
  8.   8 / 21          0 1365.56183  0.2690  1.4428   258.3  11/24  SO_0095    G.KGGWITPGLIDAH.T
  9.   9 /322          0 1363.69070  0.2697  1.4413   147.6  10/24  SO_0160    I.GTLIALMLPFSIS.F
 10.  10 /  2          0 1365.64318  0.2791  1.4230   402.9  11/22  SO_0319    L.LKDVQDPKVPLL.V

 46.  46 /  1          0 1363.58738  0.4124  1.1598   416.8  14/24  SO_3517    L.LILDSGQPVPPRA.Q

  1.          0  SO_3837 ribose-phosphate pyrophosphokinase 
  2.          0  SO_2151 protein of unknown function DUF58 
  3.          0  SO_3665 ABC transporter ATP-binding/permease protein 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2623.2623.3.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2623.2623.3.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 02:50 PM, 0.7 sec. on pnode20.emsl.pnl.gov
 (M+H)+ mass = 2044.98900 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO
 total inten = 4112.8, lowest Sp = 160.7, # matched peptides = 72406
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 /  9          0 2046.44246  0.0000  2.0087   312.5  21/68  SO_0725    A.KVLAKLEKVQKDFNGSLK.G
  2.   2 / 70          0 2047.30766  0.0455  1.9172   230.8  19/64  SO_A0165   R.QPKEGIWALYPHNRHLS.P
  3.   3 /130          0 2043.33420  0.1871  1.6329   209.5  19/72  SO_1486    G.LELVSLGHSSITVSCQVRN.K
  4.   4 / 12          0 2046.26345  0.1873  1.6324   305.4  21/72  SO_0424    K.ELPVDVLANAIKEYGIDAD.K
  5.   5 / 74          0 2046.39933  0.1905  1.6260   228.6  17/68  SO_4711    K.IKVDNKVLHKPGKLTPEE.F
  6.   6 /179          0 2045.41133  0.2061  1.5946   199.0  21/80  SO_1602    P.AAIASTIAPINALSPITGIIH.G
  7.   7 /213          0 2043.46531  0.2253  1.5562   192.6  18/72  SO_3828    E.NARIPSLRDLMLIVAVGFG.I
  8.   8 /330          0 2043.48341  0.2285  1.5497   176.4  18/72  SO_1336    N.RKGVTSLAPYGVLGLILWV.A
  9.   9 /354          0 2042.32271  0.2292  1.5483   173.2  16/68  SO_3069    N.QQIAVLEETLQASKKQNL.A
 10.  10 /192          0 2047.38732  0.2319  1.5430   195.4  19/76  SO_4693    L.AVGDQVIVEGLQKIRPGAPV.I

 45.  45 /  1          0 2042.19176  0.3538  1.2979   372.2  25/76  SO_2571    N.TAAVKDQASPYSSGKPGTFE.A

  1.          0  SO_0725 catalase/peroxidase HPI (KatG-1) 
  2.          0  SO_A0165 transcriptional regulator, LysR family 
  3.          0  SO_1486 cytosolic long-chain acyl-CoA thioester hydrolase family protein 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2624.2624.2.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2624.2624.2.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 01:18 PM, 0.3 sec. on pnode22.emsl.pnl.gov
 (M+H)+ mass = 1013.97400 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO
 total inten = 4557.5, lowest Sp = 162.3, # matched peptides = 71931
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 /305          0 1016.08728  0.0000  1.8741   179.6  10/20  SO_2951    T.NGTPAGSAELV.W
  2.   2 /474          0 1014.15766  0.0794  1.7254   163.5  10/18  SO_3331    E.IEPKGKAAAE.I
  3.   3 / 33          0 1016.13041  0.1026  1.6818   252.0  10/16  SO_3936    Q.DIEARAEVL.K
  4.   4 /110          0 1016.19229  0.2323  1.4389   213.9   8/14  SO_3698    G.MVEYTIYP.D
  5.   5 /114          0 1014.20249  0.2435  1.4178   212.1  10/16  SO_2743    L.IQWATGLPK.T
  6.   6 / 98          0 1016.19705  0.2455  1.4140   217.7  10/18  SO_1949    F.NNMVPAGTVI.V
  7.   7 /279          0 1011.96598  0.2473  1.4107   183.1   9/16  SO_2842    Y.DDGSFNVEE.I
  8.   8 /228          0 1016.04737  0.2480  1.4094   190.2  10/18  SO_1197    S.NDKGNGKGEP.A
  9.   9 /191          0 1014.24070  0.2503  1.4051   195.6  10/16  SO_2383    L.LLLDKAELV.F
 10.  10 / 28          0 1015.29534  0.2675  1.3729   261.8  11/18  SO_4243    L.NLLLMAAGIV.T

203. 202 /  1          0 1014.15829  0.5868  0.7744   406.3  11/14  SO_4732    F.MTQEYMPN.T

  1.          0  SO_2951 prophage LambdaSo expressed protein 
  2.          0  SO_3331 ParA-family protein 
  3.          0  SO_3936 sodium-type flagellar protein, MotX 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2624.2624.3.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2624.2624.3.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 09:32 AM, 0.4 sec. on pnode18.emsl.pnl.gov
 (M+H)+ mass = 1520.45700 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO
 total inten = 4593.0, lowest Sp = 178.7, # matched peptides = 73232
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 /  3          0 1517.69353  0.0000  2.0273   310.3  17/48  SO_0991    L.RWGEAHGFSPELM.E
  2.   2 / 55          0 1518.88906  0.2296  1.5619   248.5  16/56  SO_2375    M.AINAGLALLMTGFIL.F
  3.   3 / 89          0 1521.65698  0.2478  1.5249   234.9  17/44  SO_0283    Q.DKELQLRDDFKN.K
  4.   4 /165          0 1520.66745  0.2648  1.4905   216.1  13/48  SO_3660    R.FELAHQGTLFLDE.V
  5.   5 /134          0 1517.88095  0.2664  1.4873   224.8  15/52  SO_4609    A.WPIVGAIGLFLIAF.G
  6.   6 /334          0 1522.72648  0.2942  1.4309   191.5  15/48  SO_1367    L.DAHYVISLYQSII.E
  7.   7 /139          0 1518.78574  0.3150  1.3887   222.8  17/60  SO_1236    W.VLANLPKGIAHGTGIG.I
  8.   8 /163          0 1522.77608  0.3222  1.3741   216.3  15/48  SO_4426    L.YLLKPHSGKTHQL.R
  9.   9 /316          0 1520.62431  0.3245  1.3695   193.6  17/56  SO_2143    G.YDLGATAGFFAGTQT.I
 10.  10 /162          0 1519.76727  0.3312  1.3559   216.4  16/52  SO_1602    S.ELNQAALFGLTKTL.N

 51.  51 /  1          0 1517.85687  0.4798  1.0546   426.8  19/48  SO_4451    A.FIEMASTTLEMIM.S

  1.          0  SO_0991 peptide chain release factor 2, PrfB 
  2.          0  SO_2375 integral IM membrane protein (DsrM?) 
  3.          0  SO_0283 type IV pilus biogenesis protein, PilO 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2625.2625.2.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2625.2625.2.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 01:55 PM, 0.4 sec. on pnode21.emsl.pnl.gov
 (M+H)+ mass = 1338.10000 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO
 total inten = 7357.9, lowest Sp = 187.7, # matched peptides = 69829
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 /  1          0 1338.45164  0.0000  2.5413   807.4  16/22  SO_4662    K.AHIAQAEQLNDK.M
  2.   2 / 40          0 1335.48766  0.2732  1.8469   308.3  10/22  SO_1813    G.QFKAIDELANVS.G
  3.   3 /167          0 1339.65056  0.3123  1.7477   245.1   9/22  SO_3653    E.AHLKLAAIIEFI.H
  4.   4 /378          0 1335.57394  0.3511  1.6490   200.2   8/24  SO_1062    Q.TPNKPLPIAVVGE.A
  5.   5 / 73          0 1339.48123  0.4020  1.5197   282.9   9/18  SO_2085    F.FEEDLQVRFR.P
  6.   6 / 12          0 1337.33254  0.4150  1.4867   358.2  11/26  SO_3582    A.QSTSAAANSAKDAD.T
  7.   7 /122          0 1335.61602  0.4157  1.4848   259.9  10/22  SO_3935    K.IIEECMILANVS.A
  8.   8 /  2          0 1337.50033  0.4215  1.4701   565.1  14/22  SO_1375    K.GSLFTTDELIIQ.A
  9.   9 /273          0 1339.56476  0.4313  1.4452   216.1   9/22  SO_3963    L.SCMAEKLSDKQV.L
 10.  10 / 22          0 1336.54076  0.4323  1.4427   336.9  11/22  SO_0988    I.EIFEAMPKAGGW.L

  1.          0  SO_4662 lemA protein 
  2.          0  SO_1813 DNA transport ComEA-like competence protein 
  3.          0  SO_3653 octaprenyl-diphosphate synthase, IspB 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2625.2625.3.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2625.2625.3.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 09:32 AM, 0.7 sec. on pnode18.emsl.pnl.gov
 (M+H)+ mass = 2006.64700 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO
 total inten = 7357.9, lowest Sp = 224.2, # matched peptides = 71674
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 /  7          0 2009.33755  0.0000  2.0644   434.1  22/68  SO_2723    D.ELVTAFRDISPKAPTHIL.I
  2.   2 /  2          0 2007.24014  0.0639  1.9325   493.1  20/64  SO_4557    S.LKTNHLAVAELQRQQQE.V
  3.   3 /374          0 2008.34955  0.1493  1.7562   234.7  16/64  SO_3966    L.AYILRSLPDTVYKQVLQ.S
  4.   4 / 31          0 2005.09807  0.1498  1.7550   340.9  20/76  SO_4439    M.GGGLGSRTSRSGGQEQHAYV.D
  5.   5 / 10          0 2008.13386  0.1868  1.6787   415.8  19/64  SO_4612    F.DFNTQPASQSLKEWLDQ.Q
  6.   6 / 64          0 2009.13228  0.2421  1.5646   312.8  19/64  SO_1179    H.IEDEEAEEMESLETQLI.E
  7.   7 /121          0 2009.29441  0.2454  1.5579   284.4  19/72  SO_1932    N.FLDVGGGATKERVAEAFKI.I
  8.   8 / 59          0 2009.20644  0.2577  1.5323   315.1  19/76  SO_2461    A.SGVANGQTFKSSVQVIVTDA.V
  9.   9 /395          0 2007.25888  0.2634  1.5206   232.4  18/72  SO_4232    A.TAAKDMAGNAVIPNFYVSH.Q
 10.  10 /134          0 2004.18835  0.2732  1.5004   280.6  20/76  SO_0306    S.LLPTASFGSSGGDTRFSFGV.K

265. 265 /  1          0 2008.35294  0.6129  0.7991   493.6  21/60  SO_3808    R.NFILLKSNFRQYLGFF.S

  1.          0  SO_2723 purine nucleoside phosphoramidase, HinT 
  2.          0  SO_4557 methyl-accepting chemotaxis protein with Cache sensory domain 
  3.          0  SO_3966 magnesium transporter, MgtE_2 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2626.2626.1.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2626.2626.1.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 02:43 PM, 0.3 sec. on pnode19.emsl.pnl.gov
 (M+H)+ mass = 873.42300 ~ 3.0000 (+1), fragment tol = 0.0000 , AVG/MONO
 total inten = 5099.0, lowest Sp = 169.2, # matched peptides = 82653
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 /  1          0  873.97566  0.0000  1.9968   727.5  10/12  SO_0432    S.FHDVVEK.M
  2.   2 / 11          0  873.97719  0.2734  1.4508   363.6   9/14  SO_1876    L.ERNVVVSA.P
  3.   3 /  4          0  875.00510  0.2795  1.4387   464.8   9/12  SO_3786    P.ERTLVEK.M
  4.   4 / 18          0  875.04839  0.2995  1.3987   337.3   8/12  SO_4128    G.FHTLIPF.V
  5.   5 / 55          0  874.01710  0.3040  1.3898   280.4   8/14  SO_0223    L.KKELVEAG.A
  6.   6 / 73          0  875.94518  0.3112  1.3754   263.5   7/12  SO_0225    E.VWDVLDE.V
  7.   7 /142          0  874.02033  0.3209  1.3560   224.3   7/14  SO_2927    A.GVKNAKEK.A
  8.   8 /  9          0  873.97566  0.3277  1.3424   370.3   8/12  SO_4145    V.VYHVVQE.Q
  9.   9 / 71          0  874.02525  0.3312  1.3355   263.8   6/10  SO_4425    H.QRWQKK.A
 10.  10 / 62          0  873.97719  0.3335  1.3309   270.5   7/14  SO_1178    P.PSTNAQKK.S

  1.          0  SO_0432 aconitate hydratase 2,AcnB 
  2.          0  SO_1876 pseudogene: transcriptional regulator, lysR family, interruption 
  3.          0  SO_3786 expressed protein 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2627.2627.2.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2627.2627.2.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 03:10 PM, 0.3 sec. on pnode17.emsl.pnl.gov
 (M+H)+ mass = 838.01300 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO
 total inten = 5573.0, lowest Sp = 190.7, # matched peptides = 63328
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 / 85          0  836.91219  0.0000  1.5463   278.7   7/12  SO_2601    N.QDIADFK.K
  2.   2 / 39          0  837.94332  0.0579  1.4568   319.3   8/14  SO_1933    G.KGTAADKF.A
  3.   3 / 26          0  835.97056  0.0959  1.3980   333.0   8/12  SO_0943    E.LVQHIPE.L
  4.   4 /148          0  836.01047  0.1004  1.3911   250.9   7/12  SO_2660    A.LVELSFK.V
  5.   5 / 54          0  836.99846  0.1397  1.3303   293.6   8/14  SO_2557    A.VVKPAEPP.T
  6.   6 / 17          0  836.91219  0.1399  1.3300   372.0   8/12  SO_3293    L.VVDDNFK.L
  7.   7 /358          0  836.07711  0.1414  1.3276   203.7   8/14  SO_2361    I.VIAGCFLL.L
  8.   8 / 31          0  837.90018  0.1533  1.3092   327.9   8/12  SO_0754    K.RGELSFE.N
  9.   9 / 55          0  836.95855  0.1620  1.2958   293.1   8/12  SO_1065    K.RGESLKF.P
 10.  10 /208          0  836.91219  0.1646  1.2918   229.7   7/12  SO_0134    R.DENAIFK.G

 86.  85 /  1          0  836.95532  0.3546  0.9980   492.1   9/14  SO_A0039   S.KAPEPTPP.N

  1.          0  SO_2601 C-terminal processing protease-1 
  2.          0  SO_1933 succinyl-CoA synthase, alpha subunit,SucD 
  3.          0  SO_0943 signalling protein with  PAS and GGDEF domains 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2627.2627.3.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2627.2627.3.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 01:55 PM, 0.4 sec. on pnode21.emsl.pnl.gov
 (M+H)+ mass = 1256.51600 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO
 total inten = 5573.0, lowest Sp = 230.2, # matched peptides = 73196
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 /230          0 1256.38900  0.0000  1.8637   269.9  14/44  SO_0485    T.KAAAEAFAKEYG.G
  2.   2 /489          0 1257.46158  0.0235  1.8199   230.9  15/52  SO_4446    L.AVVGPSGGGKTTLL.R
  3.   3 /306          0 1256.43367  0.0271  1.8133   256.1  13/44  SO_2214    H.LGKTSALQSTHL.V
  4.   4 /126          0 1258.29729  0.0362  1.7962   306.4  14/40  SO_A0080   V.EIPIDDSNCHD.F
  5.   5 / 88          0 1259.43925  0.0550  1.7611   324.0  14/36  SO_2760    L.RLAIDYKKHD.T
  6.   6 / 46          0 1258.48948  0.0634  1.7456   353.8  15/44  SO_0949    M.LGSLSLNLSQLI.Y
  7.   7 /311          0 1258.34043  0.0786  1.7172   254.8  12/40  SO_3069    D.DDDINDMAVHL.D
  8.   8 /410          0 1258.45449  0.0871  1.7013   241.3  13/36  SO_3472    D.RIATHILDYR.D
  9.   9 /125          0 1259.43756  0.0892  1.6974   307.1  14/40  SO_A0086   Y.LREGDTLVVTR.L
 10.  10 /394          0 1259.41470  0.0955  1.6857   243.4  14/48  SO_2225    S.ATPAECNLAQVAA.I

 83.  83 /  1          0 1257.42490  0.3192  1.2688   517.4  16/40  SO_3037    L.DIGIGEVNRKR.W

  1.          0  SO_0485 NosL-like copper chaperone 
  2.          0  SO_4446 ABC molybdenum transporter, ATPase subunit, ModC-like 
  3.          0  SO_2214 pseudogene: glucose/galactose transporter, GluP, frameshift 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2629.2629.2.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2629.2629.2.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 03:10 PM, 0.3 sec. on pnode17.emsl.pnl.gov
 (M+H)+ mass = 1218.39400 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO
 total inten = 5921.1, lowest Sp = 236.0, # matched peptides = 76870
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 /  1          0 1218.34230  0.0000  3.1558   860.0  15/20  SO_3222    K.LSTQAGKDELR.Q
  2.   2 /  2          0 1218.51332  0.2421  2.3918   720.6  14/20  SO_3735    F.FASILSVVLLR.F
  3.   3 /  6          0 1218.47558  0.3088  2.1812   544.9  12/20  SO_0297    L.MIGQAPNSMLR.D
  4.   4 /  4          0 1219.24894  0.3610  2.0167   577.3  14/20  SO_1924    S.DTARGGENWGR.L
  5.   5 /  8          0 1219.28393  0.3845  1.9424   532.7  13/24  SO_3514    N.KSSQADIAEGGVG.G
  6.   6 / 12          0 1218.49522  0.4251  1.8142   467.9  11/20  SO_3895    G.DSKVAVMAKRI.R
  7.   7 /137          0 1218.42704  0.4258  1.8120   307.7   9/18  SO_4321    P.QIEEVAIFLR.Q
  8.   8 /285          0 1219.44007  0.4304  1.7974   266.6   9/20  SO_1461    K.SLSGLICKQNR.A
  9.   9 /133          0 1218.45377  0.4347  1.7840   311.1  10/20  SO_1375    E.MQLGANPAFLR.Q
 10.  10 /308          0 1218.34553  0.4389  1.7707   264.1  10/20  SO_0174    G.LSTLTERAGNR.P

  1.          0  SO_3222 flagellar basal body protein, FliL 
  2.          0  SO_3735 monofunctional biosynthetic peptidoglycan transglycosylase 
  3.          0  SO_0297 lipoprotein 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2629.2629.3.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2629.2629.3.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 02:50 PM, 0.5 sec. on pnode20.emsl.pnl.gov
 (M+H)+ mass = 1827.08700 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO
 total inten = 5938.1, lowest Sp = 186.2, # matched peptides = 72056
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 /328          0 1830.07280  0.0000  1.7992   202.0  16/72  SO_1599    T.ASKLLSDALGLGGAQLSLD.A
  2.   2 /446          0 1829.26720  0.0796  1.6560   190.9  13/56  SO_3175    T.SKVWKRLSVLPVFLR.S
  3.   3 /322          0 1829.11476  0.1031  1.6137   202.5  14/64  SO_0572    R.CVQVTVENGIANVVLNR.P
  4.   4 /263          0 1828.14874  0.1099  1.6014   210.2  15/60  SO_4170    D.WLINCIGMLHTEDKGP.E
  5.   5 / 11          0 1826.05805  0.1381  1.5506   334.7  18/64  SO_1744    G.ATESLPISMIASDELFT.T
  6.   6 /269          0 1830.03935  0.1602  1.5109   209.2  13/56  SO_2133    I.DSNEKARELQRTLRL.I
  7.   7 / 43          0 1829.22237  0.1858  1.4649   276.4  17/60  SO_4800    N.NILNKAFQSAIRIVKL.Q
  8.   8 /180          0 1828.96200  0.1888  1.4595   223.7  16/64  SO_4613    M.DNLAIADAFSPFQGQHP.S
  9.   9 /304          0 1829.04828  0.1915  1.4547   204.8  14/56  SO_4379    Q.LIYWPEQSIRSHLEG.G
 10.  10 /232          0 1828.06182  0.1945  1.4493   214.9  15/64  SO_1872    S.LHIVALYSGNDRAEIVG.P

275. 274 /  1          0 1828.01546  0.5653  0.7822   433.1  22/64  SO_3275    L.YVPTHSNTTAEVINAPI.A

  1.          0  SO_1599 multi-domain beta-ketoacyl synthase (PfaC) 
  2.          0  SO_3175 asparagine synthase, glutamine-hydrolyzing, WbpS 
  3.          0  SO_0572 enoyl-CoA hydratase/isomerase family protein 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2630.2630.2.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2630.2630.2.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 01:18 PM, 0.3 sec. on pnode22.emsl.pnl.gov
 (M+H)+ mass = 956.42100 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO
 total inten = 5107.2, lowest Sp = 217.3, # matched peptides = 71600
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 /101          0  959.20828  0.0000  1.5495   297.0  10/16  SO_0425    A.GKLLSLTVK.V
  2.   2 /141          0  956.07667  0.0067  1.5391   279.9   9/14  SO_1602    G.FIAKDYAQ.L
  3.   3 /312          0  955.00563  0.0091  1.5354   239.0   9/14  SO_1612    G.WGDTAYNK.I
  4.   4 / 84          0  958.13401  0.0627  1.4525   302.3  10/16  SO_0352    S.IALKAELAE.K
  5.   5 / 67          0  955.04708  0.0652  1.4485   312.8  10/16  SO_3787    K.SATSLYANK.L
  6.   6 /405          0  955.94879  0.0720  1.4380   228.1   8/14  SO_1896    A.QNDEHALE.L
  7.   7 /365          0  958.09410  0.0736  1.4355   232.8   9/18  SO_0354    I.AIGNIVGSNI.F
  8.   8 / 12          0  956.07667  0.0798  1.4260   392.6  11/16  SO_1185    D.FIAYKGEAG.A
  9.   9 /221          0  955.13181  0.0837  1.4199   257.2  10/16  SO_3741    L.FIFSLAGLS.K
 10.  10 /132          0  955.00394  0.1071  1.3835   282.7   9/14  SO_2099    E.ENLEHALE.T

 38.  38 /  1          0  957.01829  0.2109  1.2227   521.0  11/14  SO_4456    Y.FSPEYDAK.A

  1.          0  SO_0425 pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetylt
  2.          0  SO_1602 multi-domain beta-ketoacyl synthase (PfaA) 
  3.          0  SO_1612 conserved domain lipoprotein 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2630.2630.3.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2630.2630.3.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 02:43 PM, 0.4 sec. on pnode19.emsl.pnl.gov
 (M+H)+ mass = 1434.12700 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO
 total inten = 5155.2, lowest Sp = 224.9, # matched peptides = 73485
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 /  9          0 1433.42524  0.0000  1.7660   378.9  18/44  SO_0404    G.SRDHDNTFNQAQ.L
  2.   2 / 24          0 1434.61923  0.0635  1.6539   348.0  17/48  SO_2758    S.DILIRTGGDEFVV.I
  3.   3 / 19          0 1435.67064  0.0959  1.5967   353.5  18/48  SO_0777    Q.TMLNAPKAEFLAE.L
  4.   4 /294          0 1433.63770  0.1323  1.5324   245.2  15/44  SO_3258    L.VNERIQGNKIYV.S
  5.   5 / 21          0 1435.65683  0.1359  1.5260   351.1  18/48  SO_2411    N.GRKGIIDAYKTGR.G
  6.   6 /128          0 1436.64159  0.1798  1.4484   276.1  16/44  SO_3090    S.RDQVINHILTQV.A
  7.   7 /  3          0 1436.68150  0.1880  1.4339   458.0  19/48  SO_4030    V.RKIVLYGSGKDSI.A
  8.   8 / 26          0 1434.60129  0.1898  1.4309   345.8  18/48  SO_2047    T.WQSMPVPFEANGA.L
  9.   9 /183          0 1431.66018  0.1927  1.4256   263.8  16/48  SO_2055    R.FAIYLPPEAANKP.V
 10.  10 /306          0 1432.68962  0.1931  1.4249   242.8  13/48  SO_4637    R.LDVGILRFGEISL.N

203. 202 /  1          0 1434.49136  0.5280  0.8335   488.7  21/56  SO_2469    K.TNDAGSNLGNIIGTS.G

  1.          0  SO_0404 zinc dependent metalloprotease domain lipoprotein 
  2.          0  SO_2758 signalling protein with GGDEF domain 
  3.          0  SO_0777 2-octaprenyl-6-methoxyphenol hydroxylase, UbiH 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2631.2631.1.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2631.2631.1.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 01:18 PM, 0.3 sec. on pnode22.emsl.pnl.gov
 (M+H)+ mass = 818.55400 ~ 3.0000 (+1), fragment tol = 0.0000 , AVG/MONO
 total inten = 2647.5, lowest Sp = 56.2, # matched peptides = 87077
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 / 62          0  818.89840  0.0000  1.5515    85.3   7/14  SO_3343    R.GSVADTIR.D
  2.   2 / 28          0  818.94000  0.1573  1.3074   100.3   7/16  SO_2626    F.LFAGPTGVG.K
  3.   3 /368          0  817.87050  0.2553  1.1555    56.8   5/12  SO_2865    A.QNADTLR.K
  4.   4 / 71          0  817.91041  0.2608  1.1468    83.3   6/14  SO_3991    L.KDALKADG.T
  5.   5 /114          0  817.95031  0.2676  1.1363    78.2   6/14  SO_1159    E.SLIDTVLG.L
  6.   6 / 10          0  817.86404  0.2824  1.1134   111.8   7/14  SO_0187    Q.DVVDELAG.Y
  7.   7 /110          0  815.89451  0.2826  1.1131    78.7   6/14  SO_0930    T.AEQLANVA.K
  8.   8 /  1          0  816.02393  0.2883  1.1042   160.5   8/14  SO_1795    R.AKKVLSVA.V
  9.   9 / 32          0  817.86404  0.3134  1.0652    98.0   7/14  SO_1530    Q.EIADGAIE.I
 10.  10 /  5          0  815.93765  0.3253  1.0469   126.1   8/16  SO_0560    G.AAGINLSAV.A

  1.          0  SO_3343 expressed lipoprotein 
  2.          0  SO_2626 ATP-dependent Clp protease, ATP-binding subunit (ClpA) 
  3.          0  SO_2865 L-lysine exporter, LysE family 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2632.2632.2.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2632.2632.2.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 09:32 AM, 0.3 sec. on pnode18.emsl.pnl.gov
 (M+H)+ mass = 1178.08600 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO
 total inten = 6135.0, lowest Sp = 194.0, # matched peptides = 74476
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 /  2          0 1178.40605  0.0000  1.5155   491.1  13/20  SO_2357    G.RILSYTLAGAL.V
  2.   2 / 46          0 1177.37815  0.0216  1.4828   295.1  10/18  SO_2109    V.LRQSIFTAQL.P
  3.   3 / 28          0 1178.32300  0.0544  1.4330   321.2  11/22  SO_0066    L.SNKIKAAFGGNA.A
  4.   4 /  3          0 1178.35968  0.0560  1.4307   478.1  13/20  SO_0839    G.LVGEGYDIAIK.Y
  5.   5 /113          0 1179.35091  0.0687  1.4115   259.6   9/20  SO_1907    L.ANGSLHPLELK.E
  6.   6 / 62          0 1177.33501  0.0947  1.3720   284.5  10/18  SO_2064    L.LESLHQISLH.Q
  7.   7 /107          0 1179.22472  0.0980  1.3669   260.8  11/20  SO_2790    Q.ANGLSHEKAHD.A
  8.   8 /199          0 1179.39081  0.1063  1.3544   234.0  10/20  SO_0365    V.ASIATQFVTLK.F
  9.   9 / 81          0 1178.31977  0.1459  1.2944   272.3   9/20  SO_3551    Y.AKGDAKAFEQL.Y
 10.  10 /185          0 1178.47269  0.1533  1.2831   237.3   9/22  SO_0980    K.MVVLGAAHAPVL.G

308. 306 /  1          0 1177.33024  0.6478  0.5337   606.7  14/20  SO_1723    L.SIAGAIYTAYF.M

  1.          0  SO_2357 conserved hypothetical inner membrane protein 
  2.          0  SO_2109 expressed peptidoglycan-binding protein of unknown function 
  3.          0  SO_0066 expressed protein of unknown function 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2632.2632.3.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2632.2632.3.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 03:10 PM, 0.4 sec. on pnode17.emsl.pnl.gov
 (M+H)+ mass = 1766.62500 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO
 total inten = 6135.0, lowest Sp = 237.8, # matched peptides = 71353
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 /246          0 1764.14223  0.0000  1.8327   268.7  18/72  SO_0508    T.GLALSLLGALLIGGLAVPD.W
  2.   2 /  4          0 1767.02057  0.1315  1.5917   476.6  20/60  SO_4008    R.QLNESSSHGMAYLILC.K
  3.   3 /141          0 1765.02431  0.1512  1.5557   300.6  18/68  SO_2073    N.VCGITEIYQVGGAQAIAA.L
  4.   4 / 12          0 1766.14172  0.1701  1.5209   405.8  20/64  SO_3807    A.AMHQGTDILAGLLIAKL.Y
  5.   5 /103          0 1765.04394  0.1782  1.5061   312.1  18/60  SO_1571    P.LKDTLGVELGEQHVLL.P
  6.   6 /313          0 1766.04009  0.1794  1.5039   259.4  17/56  SO_2333    A.QFLLKNLQRSGTGFR.W
  7.   7 /264          0 1767.00029  0.1814  1.5003   265.8  16/56  SO_1718    H.EIGMQKGNYSIERLQ.E
  8.   8 /258          0 1765.05686  0.1869  1.4901   266.5  16/56  SO_1055    V.AVARDITKHKLAERR.Q
  9.   9 /316          0 1768.00792  0.1878  1.4886   259.3  16/60  SO_2715    K.KSNNKSSIFTISLTRA.P
 10.  10 /235          0 1766.94350  0.1913  1.4822   271.7  16/52  SO_0843    L.FEHSAREILGQWHR.L

 22.  22 /  1          0 1764.10126  0.2381  1.3963   570.0  24/68  SO_3562    A.SLIGLAVGSLIDMGGTMQ.L

  1.          0  SO_0508 expressed protein 
  2.          0  SO_4008 conserved hypothetical protein 
  3.          0  SO_2073 histidinol dehydrogenase, HisD 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2633.2633.1.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2633.2633.1.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 02:43 PM, 0.3 sec. on pnode19.emsl.pnl.gov
 (M+H)+ mass = 936.38900 ~ 3.0000 (+1), fragment tol = 0.0000 , AVG/MONO
 total inten = 3940.7, lowest Sp = 99.1, # matched peptides = 71575
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 / 40          0  936.98861  0.0000  1.9713   158.4   7/16  SO_0248    K.AYGSTNPIN.I
  2.   2 / 52          0  936.09013  0.3353  1.3102   151.4   8/16  SO_2536    A.LATGAYARI.R
  3.   3 /186          0  936.13544  0.3413  1.2985   120.4   7/16  SO_3288    R.SPTGVRGMM.M
  4.   4 / 26          0  939.08973  0.3603  1.2610   167.4   8/16  SO_1929    E.VADGTDMMV.L
  5.   5 /152          0  937.01042  0.3690  1.2438   125.3   7/18  SO_3642    S.ASAIDTGMGN.I
  6.   6 /118          0  935.10213  0.3737  1.2346   132.7   6/14  SO_3306    G.ERGLTLVF.D
  7.   7 /329          0  936.04376  0.3990  1.1848   105.2   7/16  SO_4317    L.PSTTGNVLF.N
  8.   8 /173          0  935.09890  0.4010  1.1808   122.0   6/14  SO_1141    I.LKTDTPIF.G
  9.   9 / 74          0  937.02852  0.4460  1.0920   142.8   7/16  SO_2446    D.FSGPTSLDL.E
 10.  10 / 13          0  937.15794  0.4606  1.0634   192.2   8/16  SO_3855    G.PAILEAPLI.N

230. 230 /  1          0  936.04376  0.7225  0.5470   276.9   8/14  SO_3108    L.FIDTVNLN.V

  1.          0  SO_0248 ribosomal protein S5, RpsE 
  2.          0  SO_2536 oxidoreductase, acyl-CoA dehydrogenase family 
  3.          0  SO_3288 transglycosylase, Slt family 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2634.2634.2.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2634.2634.2.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 01:55 PM, 0.3 sec. on pnode21.emsl.pnl.gov
 (M+H)+ mass = 1033.98300 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO
 total inten = 2833.3, lowest Sp = 128.4, # matched peptides = 78369
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 /  3          0 1032.13307  0.0000  1.4576   282.0  12/18  SO_0779    L.RDAGTDKLVG.L
  2.   2 / 96          0 1031.10041  0.0850  1.3338   174.7   9/16  SO_4696    A.DWPTENIVG.L
  3.   3 / 88          0 1031.27942  0.1451  1.2462   178.3   8/14  SO_2365    K.RLIFVLNR.N
  4.   4 / 76          0 1031.10364  0.1557  1.2307   180.8  11/16  SO_3805    H.SSEVTKGWH.A
  5.   5 /303          0 1031.06850  0.1575  1.2281   141.9   8/14  SO_4211    A.RRDAENNR.P
  6.   6 /199          0 1031.18822  0.1651  1.2170   156.7   8/14  SO_3961    T.KLKEDELR.D
  7.   7 /230          0 1032.20617  0.1730  1.2055   151.7   8/14  SO_3779    L.RRADMLNR.L
  8.   8 /107          0 1032.23962  0.1812  1.1935   172.7   9/16  SO_4149    M.TTVPVMDLR.A
  9.   9 /443          0 1031.19468  0.1821  1.1922   132.0   9/14  SO_2396    V.RDVKTQKR.R
 10.  10 /208          0 1031.10364  0.1919  1.1779   155.4   8/14  SO_1915    K.DWTPDQIR.S

 50.  50 /  1          0 1031.18822  0.3467  0.9523   308.6  10/16  SO_2773    V.TANLTELIR.G

  1.          0  SO_0779 glycine cleavage system T protein (GcvT) 
  2.          0  SO_4696 methyladenine glycosylase 
  3.          0  SO_2365 expressed lipoprotein 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2634.2634.3.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2634.2634.3.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 04:52 PM, 0.9 sec. on P1
 (M+H)+ mass = 1550.47100 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO
 total inten = 2835.8, lowest Sp = 131.4, # matched peptides = 71415
 # amino acids = 1389695, # proteins = 4198, D:\Database\ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 /388          0 1552.67754  0.0000  2.0159   138.5  14/48  SO_0404    K.LEQANDKRHGDLR.Y
  2.   2 / 12          0 1550.74146  0.1036  1.8070   249.1  19/52  SO_3872    N.VLTGAISNKYVDNR.S
  3.   3 / 10          0 1552.67277  0.1072  1.7998   253.6  18/48  SO_0292    I.ITFHPEASEHIDR.T
  4.   4 / 61          0 1551.81896  0.1460  1.7216   191.1  14/48  SO_4182    G.RIEVRVVEPGQLR.M
  5.   5 /300          0 1552.68489  0.1474  1.7187   145.4  14/52  SO_3196    K.SSDISSYFIDSTMV.G
  6.   6 /396          0 1548.94358  0.1854  1.6422   138.0  14/48  SO_2150    P.WTLGICAICLLWR.I
  7.   7 /150          0 1551.55198  0.1862  1.6405   166.6  18/60  SO_2214    A.SSINTSSHTTSVSGAD.N
  8.   8 /251          0 1552.84686  0.2043  1.6041   151.4  16/56  SO_0640    S.RSSLPVVGAGQVLIR.V
  9.   9 /241          0 1552.88354  0.2134  1.5857   152.4  15/56  SO_4519    M.PLSALAISLLLGLDR.E
 10.  10 /356          0 1549.83974  0.2500  1.5119   141.3  13/48  SO_4358    S.KKIEAYSLTLLNR.T

199. 199 /  1          0 1549.85832  0.6141  0.7780   319.7  19/56  SO_4223    N.GKTSVKEMIATILSA.K

  1.          0  SO_0404 zinc dependent metalloprotease domain lipoprotein 
  2.          0  SO_3872 arylsulfate sulfotransferase 
  3.          0  SO_0292 ribulose-phosphate 3-epimerase,Rpe 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2635.2635.2.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2635.2635.2.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 01:18 PM, 0.3 sec. on pnode22.emsl.pnl.gov
 (M+H)+ mass = 1294.39800 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO
 total inten = 6162.4, lowest Sp = 203.2, # matched peptides = 70434
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 /  1          0 1295.50658  0.0000  1.6680   600.8  14/22  SO_4344    I.LLSSVYDVAKVT.P
  2.   2 /152          0 1296.40830  0.0125  1.6471   261.9  11/24  SO_4062    W.SAGGIYQTVLDAT.L
  3.   3 / 44          0 1294.39886  0.0228  1.6299   331.5  11/20  SO_2743    K.RNIDDALKHPD.V
  4.   4 /124          0 1292.33337  0.0471  1.5894   274.7  11/22  SO_2523    D.DGDIDLTFGNPQ.L
  5.   5 /130          0 1294.48191  0.0682  1.5542   271.7  11/22  SO_3033    E.IINVVGAKDLHD.K
  6.   6 / 48          0 1291.62771  0.0911  1.5161   328.2  12/22  SO_3747    V.SQIGMFLVLGLL.L
  7.   7 /284          0 1294.49223  0.1126  1.4801   232.0  10/22  SO_0737    E.GMPVNMRTHGHG.Q
  8.   8 / 31          0 1293.49561  0.1355  1.4419   348.4  13/22  SO_1942    N.FPEAALPAIINH.H
  9.   9 /332          0 1293.37112  0.1427  1.4300   224.0  10/18  SO_0440    S.RADSWYFPHN.E
 10.  10 /188          0 1294.42390  0.1431  1.4292   252.8  11/22  SO_3759    Q.SLASCRRTNSQA.A

  1.          0  SO_4344 threonine dehydratase, IlvA 
  2.          0  SO_4062 thiosulfate reductase catalytic subunit, PhsA 
  3.          0  SO_2743 acetyl-coenzyme A synthetase, Acs 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2635.2635.3.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2635.2635.3.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 02:50 PM, 0.5 sec. on pnode20.emsl.pnl.gov
 (M+H)+ mass = 1941.09400 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO
 total inten = 6162.4, lowest Sp = 198.5, # matched peptides = 71281
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 /258          0 1940.15072  0.0000  1.8721   224.9  15/60  SO_2075    F.STYWKNGWIDAKNRSL.S
  2.   2 /336          0 1941.38616  0.0797  1.7229   214.3  17/72  SO_3600    S.LLAELGIKVAYTPLGIVVA.M
  3.   3 /182          0 1940.36213  0.1032  1.6788   234.8  19/64  SO_2406    A.QSVLLYVVRCLYSMPPA.H
  4.   4 / 14          0 1943.38396  0.1156  1.6557   319.7  18/72  SO_3385    V.AISKVKPLLMSSAKALDVA.S
  5.   5 / 21          0 1940.03666  0.1169  1.6533   309.3  18/64  SO_3106    N.QGNKDYEYYNGTSMATP.H
  6.   6 /345          0 1939.41960  0.1282  1.6321   212.8  16/64  SO_1104    M.MITVWACAFPAMFVGMY.N
  7.   7 /  3          0 1940.16607  0.1317  1.6254   390.6  20/68  SO_2916    K.SPTVNPLEPFDMAHAEAL.I
  8.   8 / 35          0 1940.19371  0.1400  1.6100   296.6  21/76  SO_4230    G.SKAVRSSHGLLTTVAVGAQG.E
  9.   9 /244          0 1941.32831  0.1444  1.6017   226.4  17/68  SO_4243    A.GAAVRIPLSMLGFFQYIG.P
 10.  10 / 52          0 1941.18016  0.1705  1.5528   274.6  20/68  SO_2934    C.LSAEGKPLINGRWKAQGD.S

410. 410 /  1          0 1938.25763  0.7427  0.4818   452.4  20/68  SO_4598    M.TLDGIINQLQQTVKVPGL.T

  1.          0  SO_2075 hypothetical protein 
  2.          0  SO_3600 ABC sulfate transporter, inner membrane subunit, CysT_1 
  3.          0  SO_2406 aspartate aminotransferase, AspC_2 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2636.2636.2.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2636.2636.2.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 03:10 PM, 0.3 sec. on pnode17.emsl.pnl.gov
 (M+H)+ mass = 799.92900 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO
 total inten = 4496.5, lowest Sp = 177.6, # matched peptides = 72023
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 /  4          0  798.90709  0.0000  1.7333   391.0  10/14  SO_4608    G.QAIPSVSP.G
  2.   2 /363          0  801.90775  0.0472  1.6515   184.6   9/14  SO_3678    H.DIAADIAI.I
  3.   3 /  2          0  800.92621  0.0915  1.5746   412.0  10/14  SO_1102    S.SLLGARSP.Q
  4.   4 / 94          0  800.88308  0.1340  1.5011   245.9   9/14  SO_3783    T.EAAVARSP.K
  5.   5 /363          0  801.86784  0.1379  1.4943   184.6   9/14  SO_2114    M.DLAANLAN.E
  6.   6 / 45          0  798.99660  0.1392  1.4920   281.6   8/12  SO_2902    A.TPLKRAL.A
  7.   7 /115          0  800.92621  0.1474  1.4777   237.8   9/12  SO_1198    L.INDVRAL.L
  8.   8 /337          0  801.90775  0.1598  1.4563   187.7   8/12  SO_2471    D.DLEQLAL.C
  9.   8 /337          0  801.95088  0.1598  1.4563   187.7   8/12  SO_1893    I.DLEKLAL.A
 10.   9 /  9          0  800.96612  0.1718  1.4355   356.3  10/14  SO_4100    N.LSLGAINI.I

 17.  16 /  1          0  800.02127  0.2214  1.3495   469.6  11/14  SO_1290    A.ISLGLIAI.A

  1.          0  SO_4608 cytochrome c oxidase assembly protein (CoxG) 
  2.          0  SO_3678 FAD-dependent oxidoreductase 
  3.          0  SO_1102 TonB-dependent receptor C-terminal region domain lipoprotein 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2636.2636.3.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2636.2636.3.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 01:18 PM, 0.4 sec. on pnode22.emsl.pnl.gov
 (M+H)+ mass = 1199.39100 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO
 total inten = 4522.0, lowest Sp = 190.3, # matched peptides = 73436
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 /365          0 1200.43199  0.0000  1.4560   200.7  13/40  SO_0409    T.TALFFSCQVLA.N
  2.   2 / 55          0 1197.45097  0.0080  1.4444   264.4  15/40  SO_0154    L.IAVIINAIWSP.P
  3.   3 /137          0 1201.44439  0.0173  1.4309   232.3  15/40  SO_0055    S.KSKLIQARSVA.N
  4.   4 /296          0 1197.41906  0.0222  1.4238   208.3  15/40  SO_3954    M.QRRAALARAIA.L
  5.   5 /286          0 1196.57106  0.0585  1.3709   209.4  15/44  SO_1434    I.PIIAILGLAMLA.I
  6.   6 / 19          0 1200.36689  0.0730  1.3498   292.9  15/44  SO_3659    L.TIEAVINGLAQA.K
  7.   7 / 33          0 1197.36146  0.0748  1.3471   280.8  15/40  SO_4047    S.PELVALSAYAY.W
  8.   8 / 60          0 1198.52031  0.0749  1.3470   259.1  16/44  SO_4475    V.VSVVAIVLTLAL.V
  9.   9 /  3          0 1198.26472  0.0798  1.3398   356.5  18/44  SO_3899    I.LADADSDGLHIA.T
 10.  10 / 72          0 1199.42203  0.1006  1.3096   254.5  16/44  SO_0336    A.VIQDLGVASLLA.D

404. 402 /  1          0 1197.36623  0.6410  0.5228   436.0  17/48  SO_4118    S.NGTAILGLGNLGP.L

  1.          0  SO_0409 thioredoxin family protein 
  2.          0  SO_0154 expressed inner membrane protein 
  3.          0  SO_0055 conserved protein 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2637.2638.2.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2637.2638.2.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 01:55 PM, 0.4 sec. on pnode21.emsl.pnl.gov
 (M+H)+ mass = 988.68800 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO
 total inten = 4542.1, lowest Sp = 150.2, # matched peptides = 81675
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 /437          0  989.17161  0.0000  1.7658   152.7   8/18  SO_0345    E.LAQAGADMVL.Y
  2.   2 / 18          0  989.30425  0.0078  1.7520   246.0   9/16  SO_4726    A.GKKKAIKLC.L
  3.   3 / 95          0  989.21475  0.0137  1.7416   201.2   8/16  SO_4682    L.LAQKALECL.A
  4.   4 / 71          0  991.03782  0.1443  1.5109   208.6   8/16  SO_3632    E.NAETVNKQS.V
  5.   5 /112          0  990.05151  0.1449  1.5099   197.2   8/14  SO_A0089   Y.WQQALTEN.E
  6.   6 /154          0  988.08030  0.1709  1.4641   187.1   9/16  SO_2162    L.GVRVVNTDQ.S
  7.   7 /193          0  986.14422  0.1833  1.4421   181.9  10/16  SO_1791    R.LNELGVVLE.D
  8.   8 /295          0  989.10666  0.1841  1.4408   165.6   8/16  SO_2433    V.GQEVTLVGW.V
  9.   9 /262          0  989.06352  0.1911  1.4283   169.3   9/18  SO_3412    W.GAPSEANFPV.C
 10.  10 /425          0  989.21475  0.2023  1.4085   153.4   8/18  SO_1682    A.AGANVVITML.P

 48.  48 /  1          0  991.03459  0.3406  1.1644   383.6  11/16  SO_3135    L.IDDTAIQSQ.G

  1.          0  SO_0345 2-methylisocitrate lyase,PrpB 
  2.          0  SO_4726 formamidopyrimidine-DNA glycosylase (MutM) 
  3.          0  SO_4682 glycosyl transferase, group 1 family protein 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2637.2638.3.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2637.2638.3.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 02:43 PM, 0.4 sec. on pnode19.emsl.pnl.gov
 (M+H)+ mass = 1482.52800 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO
 total inten = 4601.4, lowest Sp = 154.5, # matched peptides = 70522
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 / 23          0 1485.49200  0.0000  1.9184   260.6  17/56  SO_2643    L.DAGVLGDPDNVSDNP.L
  2.   2 /216          0 1482.88191  0.0856  1.7541   181.7  15/48  SO_0057    Y.MGRLGPLMLAYFL.A
  3.   3 / 34          0 1483.80480  0.1059  1.7153   250.1  16/52  SO_3331    N.LALRATMSVASHIL.M
  4.   4 / 85          0 1483.77653  0.1064  1.7143   212.5  16/52  SO_4667    E.WAVASEIPVLALLT.K
  5.   5 /  1          0 1484.79449  0.1264  1.6759   338.5  16/44  SO_3611    A.GVWQRPLLRLDM.G
  6.   6 / 66          0 1484.71969  0.1314  1.6663   220.1  16/52  SO_4283    I.VVGEEIVELVAQAK.I
  7.   7 / 37          0 1484.63665  0.1356  1.6582   246.1  17/56  SO_2596    K.LGNELTPLGAEKAGN.A
  8.   8 /466          0 1483.76166  0.1468  1.6368   156.1  13/48  SO_0154    A.INSMAKVLTQHLQ.A
  9.   9 / 63          0 1482.71026  0.1517  1.6274   222.1  15/48  SO_1924    V.NNAIVLVDRINQL.R
 10.  10 / 15          0 1481.67913  0.1523  1.6263   270.4  17/48  SO_1055    V.ILLERVDSAHNTL.L

  1.          0  SO_2643 oxidoreductase, FAD-binding 
  2.          0  SO_0057 potassium uptake protein, TrkB-like 
  3.          0  SO_3331 ParA-family protein 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2640.2640.2.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2640.2640.2.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 02:50 PM, 0.3 sec. on pnode20.emsl.pnl.gov
 (M+H)+ mass = 1050.17700 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO
 total inten = 6849.7, lowest Sp = 343.7, # matched peptides = 73310
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 /  1          0 1050.14686  0.0000  3.1122  1358.6  15/18  SO_0933    K.AYQSGALDPK.I
  2.   2 / 28          0 1051.26644  0.3344  2.0715   655.6  11/16  SO_2754    S.MLNELSRGM.E
  3.   3 /135          0 1050.06212  0.3776  1.9370   483.3  10/16  SO_1061    R.RSNELQSSE.Q
  4.   4 / 46          0 1050.10203  0.3941  1.8857   594.5  11/18  SO_2323    A.AATDLDTQSK.L
  5.   5 / 82          0 1050.14855  0.4085  1.8410   549.1  11/18  SO_1787    A.TAYIGWNPGA.G
  6.   6 / 51          0 1050.18677  0.4308  1.7714   588.7  11/16  SO_1868    G.FLPLTDKTD.A
  7.   7 /150          0 1050.14363  0.4508  1.7093   471.2  10/16  SO_4221    K.ENADIFVLE.L
  8.   8 / 50          0 1050.27474  0.4762  1.6302   589.3  11/16  SO_4364    P.FLTSLPFKP.T
  9.   9 /178          0 1049.22874  0.4790  1.6215   449.0  10/16  SO_3288    V.YREGMPAPK.D
 10.  10 /349          0 1050.10849  0.4852  1.6021   373.3   9/16  SO_1646    I.RSSIRSTDQ.A

  1.          0  SO_0933 fructose-bisphosphate aldolase, class II, Calvin cycle subtype,Fba 
  2.          0  SO_2754 sodium-type flagellar protein, MotY 
  3.          0  SO_1061 TPR domain protein 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2640.2640.3.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2640.2640.3.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 02:43 PM, 0.4 sec. on pnode19.emsl.pnl.gov
 (M+H)+ mass = 1574.76100 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO
 total inten = 6862.5, lowest Sp = 316.9, # matched peptides = 73460
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 / 50          0 1575.81596  0.0000  2.1277   478.3  20/60  SO_3963    V.AREKMGSTGIGNGIAI.P
  2.   2 /246          0 1575.87720  0.1354  1.8395   363.5  17/52  SO_0862    L.IKINKAFSEKGINI.A
  3.   3 / 23          0 1573.82293  0.1367  1.8367   523.0  18/52  SO_4556    H.ISQSALSKSLNRLR.D
  4.   4 /248          0 1573.93440  0.1673  1.7718   362.9  16/48  SO_A0089   I.KVMGAAEKRRWKL.L
  5.   5 /  3          0 1573.77011  0.1673  1.7718   724.1  22/56  SO_2635    P.LSESAIALLDAIKDN.F
  6.   6 /410          0 1575.74519  0.1832  1.7379   329.6  16/48  SO_1983    E.MLDAEISYWQCTD.A
  7.   7 /235          0 1573.85961  0.1833  1.7376   366.0  19/64  SO_1949    E.ISITAGTIAGAGKITAK.V
  8.   8 /114          0 1576.86090  0.1999  1.7023   417.0  18/52  SO_4718    L.DEIGEMPLKMQTAL.L
  9.   9 /178          0 1574.00930  0.2101  1.6807   385.2  18/52  SO_3184    K.IIEMLSKGSLKKLI.E
 10.  10 /489          0 1573.79530  0.2151  1.6699   318.0  16/48  SO_1254    P.EVMEVVERWADLP.Y

 57.  57 /  1          0 1576.77415  0.3510  1.3808  1070.1  24/52  SO_0743    T.LLDFAINDIADWLG.M

  1.          0  SO_3963 PTS system nitrogen-specific IIA component, PtsN 
  2.          0  SO_0862 D-3-phosphoglycerate dehydrogenase, SerA 
  3.          0  SO_4556 transcriptional regulator, LysR family 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2641.2641.2.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2641.2641.2.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 09:32 AM, 0.4 sec. on pnode18.emsl.pnl.gov
 (M+H)+ mass = 1004.02000 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO
 total inten = 5610.8, lowest Sp = 211.3, # matched peptides = 81505
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 / 41          0 1004.18304  0.0000  1.9859   331.6  10/16  SO_1330    G.QLIEMELGA.T
  2.   2 / 29          0 1004.20760  0.0838  1.8195   351.5  12/18  SO_2738    S.LLQGFVAKGA.I
  3.   3 / 12          0 1002.14534  0.1172  1.7531   397.7  10/16  SO_0547    A.KIALGYSYS.F
  4.   4 /365          0 1003.26275  0.1252  1.7373   223.7   9/18  SO_2822    E.KLLAFIGIGA.D
  5.   5 /  7          0 1004.12609  0.1277  1.7323   410.3  12/20  SO_3539    Y.GKSVGGRSKGA.I
  6.   6 /406          0 1003.24142  0.1278  1.7321   219.7  10/20  SO_4601    K.SLLGGAMIIAG.T
  7.   7 / 42          0 1004.20437  0.1619  1.6643   330.7  10/18  SO_3827    M.ALGLAGLFIE.A
  8.   8 /216          0 1004.07650  0.1802  1.6280   245.2  10/18  SO_4699    L.SGIGLDDAQK.L
  9.   9 /175          0 1003.13164  0.1818  1.6249   255.7   9/16  SO_4396    L.SNALVEELK.A
 10.  10 / 48          0 1002.23485  0.1899  1.6088   320.2  10/16  SO_4163    A.KLANAPFIK.V

227. 227 /  1          0 1001.12067  0.4901  1.0127   621.6  11/14  SO_2756    S.ELIAFDHR.M

  1.          0  SO_1330 DNA mismatch repair protein (MutH) 
  2.          0  SO_2738 biotin synthesis protein, BioC 
  3.          0  SO_0547 conserved hypothetical outer membrane protein 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2641.2641.3.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2641.2641.3.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 09:32 AM, 0.4 sec. on pnode18.emsl.pnl.gov
 (M+H)+ mass = 1505.52600 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO
 total inten = 5634.4, lowest Sp = 247.6, # matched peptides = 74025
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 / 37          0 1505.70392  0.0000  2.1980   371.9  19/48  SO_4509    A.KDIPHNAPTEVKR.T
  2.   2 /  8          0 1505.71604  0.0650  2.0552   491.7  19/48  SO_0424    G.KLLQLMEETVDGE.Y
  3.   3 /402          0 1504.67448  0.1601  1.8461   258.1  15/48  SO_2731    D.LGANYQQRPSAWI.E
  4.   4 / 94          0 1505.70069  0.2015  1.7551   329.2  15/44  SO_1489    L.IQDYQQRLAKLE.Q
  5.   5 /155          0 1506.66412  0.2208  1.7127   302.7  16/60  SO_1894    G.PGSDAIDAMGSKSAAK.A
  6.   6 /  3          0 1506.79200  0.2307  1.6910   549.9  20/48  SO_1811    Q.ELLMELKQFAGNL.L
  7.   7 /454          0 1505.78866  0.2349  1.6816   253.0  15/52  SO_2822    E.KLLAFIGIGADHHI.P
  8.   8 / 31          0 1503.64643  0.2502  1.6481   389.4  18/48  SO_3866    V.ALEGNSRKEKSRQ.I
  9.   9 /172          0 1505.61441  0.2550  1.6375   295.0  16/48  SO_2114    P.QINKYGHSQETSL.E
 10.  10 / 36          0 1505.65924  0.2570  1.6332   374.3  18/48  SO_4732    Q.ALGDKFDIRAFHD.A

 43.  43 /  1          0 1504.66956  0.3609  1.4047   576.4  21/60  SO_1952    K.QGGNAIDAAVAVAFSL.A

  1.          0  SO_4509 formate dehydrogenase 1, alpha subunit, FdhA_1 
  2.          0  SO_0424 pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase,A
  3.          0  SO_2731 periplasmic glucan biosynthesis protein 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2642.2642.2.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2642.2642.2.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 01:55 PM, 0.3 sec. on pnode21.emsl.pnl.gov
 (M+H)+ mass = 983.34400 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO
 total inten = 3658.1, lowest Sp = 140.5, # matched peptides = 66706
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 /318          0  984.13002  0.0000  1.6909   154.5   9/16  SO_4085    E.FPYLTTGGK.Y
  2.   2 /195          0  985.16269  0.0907  1.5376   171.9  11/18  SO_4465    D.ANQLIAVAGK.K
  3.   3 /164          0  985.11955  0.1238  1.4815   177.4   9/18  SO_3061    L.PSALNGLKGQ.G
  4.   4 /  9          0  983.10042  0.1251  1.4795   270.4  10/14  SO_0113    F.DEEHLVIK.P
  5.   5 /364          0  983.12393  0.1266  1.4768   150.6   9/18  SO_3706    I.AGTMLAGYAQ.L
  6.   6 /385          0  983.22984  0.1274  1.4756   148.3  11/20  SO_0975    I.LAAGILALIAG.T
  7.   7 / 23          0  984.04528  0.1390  1.4559   250.7  10/14  SO_2545    L.DIEDHQVK.T
  8.   8 /104          0  983.10212  0.1489  1.4391   196.2  10/14  SO_0826    N.FDYNAKPK.A
  9.   9 /243          0  984.26097  0.1547  1.4293   164.8   9/18  SO_4174    A.ALAAVGLKLK.E
 10.  10 /254          0  983.05406  0.1593  1.4216   163.0   8/14  SO_3337    L.DETEFTLK.M

153. 152 /  1          0  983.14356  0.4221  0.9772   383.6  12/16  SO_1618    Y.LEALALQPQ.A

  1.          0  SO_4085 chitinase A, ChiA 
  2.          0  SO_4465 conserved domain protein 
  3.          0  SO_3061 DNA topoisomerase III (TopB) 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2642.2642.3.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2642.2642.3.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 03:10 PM, 0.4 sec. on pnode17.emsl.pnl.gov
 (M+H)+ mass = 1474.51200 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO
 total inten = 3658.1, lowest Sp = 126.7, # matched peptides = 75050
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 /288          0 1475.76086  0.0000  1.6014   139.6  15/52  SO_1525    L.GKRIALLNFGTTLA.A
  2.   2 /481          0 1475.75763  0.0131  1.5804   127.8  14/52  SO_2402    G.IINGKVKGGFTVEL.N
  3.   3 / 65          0 1475.67628  0.0146  1.5780   173.8  14/48  SO_0980    P.KSFFQTNPHVAAK.L
  4.   4 / 99          0 1476.61467  0.0172  1.5739   164.9  14/48  SO_2126    C.YAYVAPGDQHLEI.I
  5.   5 /286          0 1473.56596  0.0175  1.5734   139.9  13/48  SO_2506    P.QTIYVSATPNSYE.L
  6.   6 /102          0 1472.71061  0.0720  1.4860   164.1  17/56  SO_4051    L.EVGSFAAVGQPLLAL.V
  7.   7 /245          0 1476.64294  0.0739  1.4831   142.7  13/44  SO_2460    P.LMQHQDTVNRYA.A
  8.   8 /483          0 1475.73630  0.0929  1.4526   127.8  13/52  SO_1563    Y.QGKVILIVNTASEC.G
  9.   9 / 23          0 1474.73513  0.0961  1.4476   201.6  15/44  SO_3786    S.KCHKLINRMSED.I
 10.  10 /372          0 1471.76898  0.1077  1.4290   133.6  12/48  SO_1642    F.VKAALLIKQQFPD.I

 44.  44 /  1          0 1474.71163  0.2690  1.1707   301.6  15/44  SO_2121    R.EKILQKARENNM.S

  1.          0  SO_1525 1-deoxy-D-xylulose-5-phosphate synthase, Dxs 
  2.          0  SO_2402 ribosomal protein S1, RpsA 
  3.          0  SO_0980 RNA methyltransferase, TrmA family 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2643.2643.2.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2643.2643.2.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 03:10 PM, 0.4 sec. on pnode17.emsl.pnl.gov
 (M+H)+ mass = 1433.76400 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO
 total inten = 6227.9, lowest Sp = 186.2, # matched peptides = 73268
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 /237          0 1436.59522  0.0000  1.7870   219.2  10/24  SO_1699    G.VDTGDNPLHKIIN.Q
  2.   2 / 21          0 1436.58876  0.0068  1.7748   329.9  12/26  SO_0984    N.SDGIDPIPPVVTPE.P
  3.   3 /340          0 1436.63359  0.0224  1.7469   204.1  10/22  SO_3685    Q.TLIDSKWFTPVE.R
  4.   4 / 45          0 1435.65360  0.0514  1.6951   287.9  11/24  SO_4693    I.ITKRSFVEGGNVK.Q
  5.   5 / 66          0 1431.68353  0.0594  1.6809   272.8  10/22  SO_3556    L.IENDLDAMRLKL.H
  6.   6 / 73          0 1434.55800  0.0594  1.6809   269.0  11/24  SO_4146    Y.QTLVGNNDSQMLN.K
  7.   7 / 61          0 1435.63396  0.0638  1.6730   277.4  10/24  SO_0054    G.GGRCNFTNLKVEP.A
  8.   8 /204          0 1435.56086  0.0642  1.6723   226.3  11/26  SO_1463    T.ASLATGDFSLEQVP.V
  9.   9 /243          0 1435.69350  0.0904  1.6254   217.9  10/24  SO_4016    C.LTTGEHPNLIKVL.A
 10.  10 / 24          0 1434.70874  0.0942  1.6186   311.1  12/24  SO_3227    D.AASILKHLEPKQV.Q

 21.  21 /  1          0 1436.70346  0.1654  1.4914   510.6  13/22  SO_0670    T.YAHVLNVYMPTK.D

  1.          0  SO_1699 transcriptional regulator 
  2.          0  SO_0984 pseudogene: serine protease, subtilase family, truncation 
  3.          0  SO_3685 curli production assembly/transport component, CsgG 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2643.2643.3.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2643.2643.3.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 01:18 PM, 0.7 sec. on pnode22.emsl.pnl.gov
 (M+H)+ mass = 2150.14200 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO
 total inten = 6227.9, lowest Sp = 184.5, # matched peptides = 71141
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 /133          0 2147.31147  0.0000  1.6064   233.6  18/72  SO_2469    E.FMRTEYDKTNDAGSNLGNI.I
  2.   2 /130          0 2148.69998  0.0383  1.5449   234.0  17/68  SO_3128    T.VMKLLDVLVYILVYFTSM.L
  3.   3 / 47          0 2148.27119  0.0483  1.5288   274.3  19/76  SO_4645    R.DRDSSGEVIIVDEGGAFSFF.A
  4.   4 /411          0 2147.56722  0.0617  1.5073   191.5  18/72  SO_0002    T.INFGSFFASLSMPLLLKNF.G
  5.   5 /161          0 2147.46221  0.0661  1.5002   224.8  17/64  SO_2951    T.INKDEVIYPIQRRELPY.Y
  6.   6 /437          0 2151.36135  0.0741  1.4874   189.7  15/68  SO_0879    G.KLVLEYSEEEESFAIRHA.D
  7.   7 / 32          0 2148.27273  0.0824  1.4740   290.5  19/76  SO_0189    D.SATIAWNQSIDVNVLANDTD.S
  8.   8 /495          0 2148.68124  0.0916  1.4593   184.7  19/88  SO_4130    A.ELVIPGGIVVLLGAACLVVAGAL.G
  9.   9 /480          0 2151.35981  0.0962  1.4519   186.2  16/76  SO_0842    I.AGFPVLDVEFELTDGAYHAV.D
 10.  10 / 18          0 2147.50688  0.0999  1.4459   321.1  20/68  SO_2095    D.DYLKLLSLKLTGRRDNLQ.S

210. 209 /  1          0 2147.33264  0.4766  0.8408   440.1  23/72  SO_2593    I.DRQSSTADIKALEREIQSV.L

  1.          0  SO_2469 TonB-dependent receptor protein 
  2.          0  SO_3128 ABC transporter, ATPase/inner membrane subunit 
  3.          0  SO_4645 expressed protein 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2644.2644.2.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2644.2644.2.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 01:55 PM, 0.3 sec. on pnode21.emsl.pnl.gov
 (M+H)+ mass = 903.51100 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO
 total inten = 2739.5, lowest Sp = 160.3, # matched peptides = 84599
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference     Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------     -------
  1.   1 / 25          0  904.00007  0.0000  1.5992   285.7  11/16  SO_4676       R.IVSSGQELA.E
  2.   2 /153          0  902.02731  0.0730  1.4825   211.5   9/14  SO_1481       S.IVDDKIAQ.I
  3.   3 /128          0  903.01531  0.0824  1.4675   216.9  10/16  SO_0820       G.AQVSGQILS.L
  4.   4 /158          0  903.05521  0.0965  1.4449   210.8   9/14  SO_4317   +2  N.IVDDKLTV.G
                       0  SO_4317 RTX toxin
                       0  SO_4317 RTX toxin
  5.   5 / 75          0  901.08569  0.1052  1.4310   245.9  10/14  SO_2341       D.LTDLVALR.E
  6.   6 /201          0  903.01208  0.1371  1.3799   196.7  10/16  SO_0867       L.TVSVSPALE.G
  7.   7 /377          0  904.04321  0.1473  1.3637   167.2   9/16  SO_2465       F.ISATAQLTV.S
  8.   8 /188          0  903.05521  0.1482  1.3622   199.3   9/14  SO_2185       G.ITLDKAIE.A
  9.   9 / 36          0  904.08634  0.1517  1.3567   273.9  11/16  SO_0368       Q.SLVSGKLSI.L
 10.  10 / 55          0  903.05844  0.1591  1.3448   260.7  10/14  SO_1405       G.IVKQTADK.I

118. 116 /  1          0  902.02731  0.4147  0.9361   399.9  11/14  SO_1798       G.EAKQLAEL.Q

  1.          0  SO_4676 3-deoxy-D-manno-octulosonic-acid (KDO) transferase, KdtA 
  2.          0  SO_1481 potassium efflux protein, KefC 
  3.          0  SO_0820 type I secretion membrane fusion protein, HlyD family 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2644.2644.3.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2644.2644.3.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 01:18 PM, 0.4 sec. on pnode22.emsl.pnl.gov
 (M+H)+ mass = 1354.76200 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO
 total inten = 2823.8, lowest Sp = 141.5, # matched peptides = 70593
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 / 75          0 1356.59484  0.0000  1.4686   195.6  14/44  SO_0180    G.PLFSLDLPNARL.L
  2.   2 /149          0 1357.66265  0.0252  1.4316   177.5  13/44  SO_3489    K.TLNYIPIPILLS.E
  3.   3 / 19          0 1356.54678  0.0378  1.4131   234.4  15/48  SO_3404    A.LVSVATNIIDDPV.A
  4.   4 /263          0 1357.55828  0.0425  1.4062   161.1  15/52  SO_2856    F.LAGMAGNSLIESPP.L
  5.   5 / 62          0 1357.62105  0.0583  1.3830   200.4  14/44  SO_2255    N.DTLIKNLAELKV.G
  6.   6 /423          0 1354.55762  0.0597  1.3809   146.2  14/44  SO_0769    L.VLDVDHNQAMIV.V
  7.   7 /381          0 1356.50687  0.1026  1.3180   148.9  14/44  SO_0991    D.DITIDINPADLR.I
  8.   8 /101          0 1357.53477  0.1046  1.3150   187.3  15/48  SO_2444    A.ELEAQIQTAIALG.K
  9.   9 /  9          0 1356.50687  0.1102  1.3068   250.8  17/52  SO_2886    V.AINTGTNLPSVATP.N
 10.  10 / 51          0 1356.67619  0.1167  1.2972   206.5  15/48  SO_2286    L.VIASISLIDLKAL.W

 86.  86 /  1          0 1357.54123  0.3236  0.9933   299.9  16/40  SO_3428    Q.VEELVNTQIRR.N

  1.          0  SO_0180 S-adenosyl-L-methionine-dependent methyltransferase 
  2.          0  SO_3489 diguanylate cyclase 
  3.          0  SO_3404 methyl-accepting chemotaxis protein with PAS / PAC sensory domains 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2645.2645.2.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2645.2645.2.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 02:50 PM, 0.4 sec. on pnode20.emsl.pnl.gov
 (M+H)+ mass = 1122.19000 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO
 total inten = 5702.9, lowest Sp = 174.4, # matched peptides = 71604
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 /176          0 1122.42554  0.0000  1.5350   215.5   9/20  SO_0308    A.LLQGIVILVPG.S
  2.   2 /116          0 1122.25945  0.0064  1.5253   234.4  10/18  SO_2153    S.VDGITHRLPN.P
  3.   3 /  2          0 1120.28346  0.0236  1.4988   466.0  14/20  SO_2742    L.GRGSVFSITVP.L
  4.   4 / 27          0 1124.32171  0.0467  1.4633   295.0  10/18  SO_3585    Y.AQALAPIRQR.H
  5.   5 / 42          0 1120.30204  0.0505  1.4575   272.6  11/22  SO_4280    F.LVTAASGCLEGV.V
  6.   6 / 57          0 1120.28669  0.0861  1.4029   262.2   9/18  SO_3141    N.TLSKIGHINH.Q
  7.   7 / 25          0 1123.29058  0.0909  1.3956   299.2  12/18  SO_3257    P.TAVINHLAQR.I
  8.   8 / 34          0 1120.23709  0.0998  1.3818   283.7  11/20  SO_1792    I.LVGADPASQVY.V
  9.   9 / 48          0 1119.34184  0.1200  1.3508   266.9  10/18  SO_2519    V.ASLVGLFKQR.D
 10.  10 /165          0 1121.26822  0.1219  1.3478   218.0  12/20  SO_4177    D.NTSPPKPPVSP.L

177. 177 /  1          0 1124.36162  0.4179  0.8935   476.2  11/18  SO_4145    Y.IASITPLRPR.Y

  1.          0  SO_0308 conserved inner membrane protein 
  2.          0  SO_2153 MoxR family ATPase 
  3.          0  SO_2742 hybrid sensor histidine kinase 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2645.2645.3.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2645.2645.3.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 02:50 PM, 0.4 sec. on pnode20.emsl.pnl.gov
 (M+H)+ mass = 1682.78200 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO
 total inten = 5702.9, lowest Sp = 227.8, # matched peptides = 71280
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 / 10          0 1682.90149  0.0000  2.2426   403.8  21/64  SO_2901    Q.VVISGSGLFTPPHGISN.E
  2.   2 / 24          0 1679.89591  0.0257  2.1850   363.4  19/64  SO_4221    A.LDGLSDHLGDIILIAGG.D
  3.   3 / 18          0 1680.93027  0.0559  2.1171   374.3  18/56  SO_1143    K.PDGLAVQVVQEIQKR.I
  4.   4 / 20          0 1684.96206  0.1517  1.9024   370.0  19/60  SO_1122    E.SRLAGIIGDISDVVRL.A
  5.   5 /388          0 1679.91618  0.1600  1.8838   240.2  17/60  SO_0747    I.TPTATGFMTLDEIPKG.E
  6.   6 / 13          0 1679.98541  0.1808  1.8372   384.9  18/56  SO_1194    A.KPKLAIQEINNQAIV.A
  7.   7 / 39          0 1679.91941  0.1882  1.8205   347.3  17/56  SO_1457    S.GNEEIILSDRALAFM.V
  8.   8 /187          0 1680.86749  0.2142  1.7621   271.1  17/56  SO_2367    D.KAQTDGFIQDAAQMR.K
  9.   9 / 66          0 1679.83313  0.2240  1.7401   322.7  18/60  SO_2113    V.LPSNMSWDGSSSLLAN.F
 10.  10 /134          0 1682.04185  0.2329  1.7202   285.4  16/60  SO_1268    G.LLCGYIGMVEGLKPST.P

389. 389 /  1          0 1679.98864  0.7311  0.6030   497.1  19/56  SO_4539    D.RNQAEQKLIGIKLAP.E

  1.          0  SO_2901 3-oxoacyl-(acyl-carrier-protein) synthase III (FabH-2) 
  2.          0  SO_4221 UDP-N-acetylmuramoylalanine--D-glutamate ligase 
  3.          0  SO_1143 periplasmic solute binding protein 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2646.2646.2.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2646.2646.2.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 09:32 AM, 0.4 sec. on pnode18.emsl.pnl.gov
 (M+H)+ mass = 1386.18200 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO
 total inten = 4179.7, lowest Sp = 158.1, # matched peptides = 74534
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 /  1          0 1387.52097  0.0000  2.8256   414.6  16/22  SO_0756    W.EDSERLLAVLNQ.S
  2.   2 / 72          0 1387.47460  0.0546  2.6713   229.4  15/28  SO_2194    E.EDDGEALIGLGGGAL.L
  3.   3 /317          0 1387.71549  0.1733  2.3359   176.3  12/24  SO_2594    I.CSLAAVIWQLGLL.T
  4.   4 / 30          0 1388.67998  0.1742  2.3333   265.5  14/24  SO_1313    K.LFALAVNNLLAKT.K
  5.   5 /426          0 1388.50573  0.1847  2.3037   164.4  13/26  SO_1887    V.EDSALVINGNIATA.G
  6.   6 / 16          0 1387.47460  0.1901  2.2885   291.1  15/24  SO_2961    D.EDDANLQLLLDGA.E
  7.   7 / 58          0 1387.67066  0.2033  2.2512   236.8  14/24  SO_4603    S.MKNIGILEGDLLA.V
  8.   8 / 22          0 1388.57560  0.2058  2.2442   283.3  14/24  SO_3496    D.LMDANIAVANARE.V
  9.   9 /208          0 1388.65865  0.2060  2.2436   191.8  13/24  SO_0228    Q.DKMGIALQKLAAE.D
 10.  10 / 27          0 1386.61925  0.2132  2.2233   275.1  15/24  SO_2910    T.GSIDNGILKLIDK.T

  1.          0  SO_0756 phospho-2-dehydro-3-deoxyheptonate aldolase, phe-sensitive, AroG 
  2.          0  SO_2194 OmpA family protein 
  3.          0  SO_2594 transport protein, RND superfamily 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2646.2646.3.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2646.2646.3.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 02:43 PM, 0.7 sec. on pnode19.emsl.pnl.gov
 (M+H)+ mass = 2078.76900 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO
 total inten = 4179.7, lowest Sp = 143.9, # matched peptides = 70617
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 / 66          0 2076.37583  0.0000  2.1068   198.5  18/72  SO_4465    T.LDGLTETLIGQFELVAVKE.I
  2.   2 /339          0 2080.43451  0.0046  2.0971   154.0  19/72  SO_3706    V.SDKMYELFGAGGFVIAFKV.L
  3.   3 /446          0 2079.41614  0.0777  1.9431   147.1  18/72  SO_4774    Q.STTGHVAKRCLKHNLKGVE.G
  4.   4 / 36          0 2079.32340  0.0913  1.9144   220.1  19/68  SO_2355    E.DTDHQMLNGKIIEHAKDL.A
  5.   5 / 27          0 2080.53936  0.0916  1.9138   228.8  21/68  SO_2798    W.SMLVDNYLMLIPLLAFPE.A
  6.   6 / 31          0 2080.52401  0.1097  1.8758   223.9  19/68  SO_4456    Q.SQLCGWFYRVLTPGIILL.G
  7.   7 /  4          0 2078.46160  0.1207  1.8526   294.6  23/76  SO_1356    M.SMIEKLPGVGQLPPDALAQI.Q
  8.   8 / 50          0 2078.35182  0.1239  1.8458   208.3  21/72  SO_2402    L.EKAYEDAETVIGIINGKVK.G
  9.   9 /  5          0 2078.38193  0.1387  1.8146   292.4  20/68  SO_4194    A.YPQVGNALVKWICSGQWQ.H
 10.  10 /100          0 2076.27469  0.1387  1.8145   190.1  21/76  SO_2352    D.MLAIVENGNALSDSQSAQLN.Q

 60.  60 /  1          0 2081.54853  0.3253  1.4214   334.9  27/84  SO_4014    S.LTMILSAIPLALATGPGSLGLA.N

  1.          0  SO_4465 conserved domain protein 
  2.          0  SO_3706 NupC-like nucleoside:proton symporter, CNT family 
  3.          0  SO_4774 pseudogene: site-specific recombinase, phage integrase family, truncat

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2647.2647.2.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2647.2647.2.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 01:55 PM, 0.4 sec. on pnode21.emsl.pnl.gov
 (M+H)+ mass = 1075.61800 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO
 total inten = 6381.7, lowest Sp = 203.7, # matched peptides = 79327
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 /  1          0 1073.18520  0.0000  2.0617   584.7  14/18  SO_3145    K.VEGNSIQVAR.E
  2.   2 / 12          0 1075.15641  0.1823  1.6858   348.5  11/18  SO_0097    R.HADAGYEIAK.N
  3.   3 /  3          0 1074.16673  0.2250  1.5978   437.3  12/20  SO_0150    D.IDDGSGAIVIN.K
  4.   4 / 43          0 1074.25300  0.2760  1.4927   305.8  10/18  SO_2801    R.VETAKALLTQ.F
  5.   5 /446          0 1074.16673  0.2850  1.4741   207.2   9/16  SO_2216    G.VETQEQLQV.M
  6.   6 /  2          0 1074.16673  0.2904  1.4629   448.4  12/18  SO_2420    K.VEDNSALVLN.L
  7.   7 /312          0 1076.18262  0.2931  1.4575   219.8  10/18  SO_4608    I.TDKQLASAIE.Q
  8.   8 /268          0 1073.24861  0.3262  1.3890   224.9   9/18  SO_0228    G.VECNVGKPQV.A
  9.   9 /124          0 1074.29783  0.3777  1.2830   258.0  10/16  SO_2679    L.VELKNVPFK.Q
 10.  10 /392          0 1076.17939  0.3805  1.2772   211.9   9/18  SO_4162    N.TELSALEIAE.K

  1.          0  SO_3145 electron transfer flavoprotein, beta subunit 
  2.          0  SO_0097 urocanate hydratase, HutU 
  3.          0  SO_0150 expressed protein 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2647.2647.3.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2647.2647.3.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 02:43 PM, 0.4 sec. on pnode19.emsl.pnl.gov
 (M+H)+ mass = 1612.92400 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO
 total inten = 6383.0, lowest Sp = 199.5, # matched peptides = 72419
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 /108          0 1615.72717  0.0000  1.7339   249.8  16/56  SO_4422    N.KVDTDLDGANISPNR.I
  2.   2 / 47          0 1615.87686  0.0386  1.6669   279.5  18/56  SO_0637    L.MEALDNPAAVNTKLK.L
  3.   3 / 11          0 1611.07340  0.0521  1.6435   335.4  17/52  SO_4155    T.WCKTILVSCILSMI.M
  4.   4 /455          0 1615.87686  0.0833  1.5895   203.3  15/52  SO_4238    S.ILKCQNLLQLGENE.A
  5.   5 / 32          0 1614.86859  0.0944  1.5702   298.7  19/56  SO_3213    S.NDTEVLTAAVRIALK.R
  6.   6 /427          0 1615.77031  0.1150  1.5346   205.8  14/48  SO_0445    V.EVQTQLQNLEKER.V
  7.   7 / 24          0 1610.85925  0.1312  1.5065   307.4  17/56  SO_2419    P.ELINTCIGCNQACLD.H
  8.   8 /297          0 1610.94012  0.1688  1.4413   217.8  15/60  SO_2486    G.PVPLIPGVASISEVMT.G
  9.   9 /162          0 1615.85336  0.1745  1.4314   235.6  16/60  SO_1700    A.IAADAQTVGVKLTLSQ.S
 10.  10 /430          0 1614.86859  0.1812  1.4198   205.6  15/56  SO_1274    Q.LELLDGKGIRSVVNT.E

105. 105 /  1          0 1612.72021  0.3963  1.0468   417.3  19/52  SO_2793    H.FIEPAGNEYAVWSE.-

  1.          0  SO_4422 TonB-dependent receptor 
  2.          0  SO_0637 expressed protein 
  3.          0  SO_4155 sensor histidine kinase for thiosulfate/tetrathionate response, TtrS 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2648.2648.2.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2648.2648.2.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 09:32 AM, 0.3 sec. on pnode18.emsl.pnl.gov
 (M+H)+ mass = 913.95400 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO
 total inten = 4404.9, lowest Sp = 195.5, # matched peptides = 69066
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 /  5          0  913.05656  0.0000  1.6440   419.0  10/14  SO_3102    M.RAITQVPQ.R
  2.   2 / 21          0  911.16685  0.0162  1.6173   348.5   9/14  SO_0166    G.VKLKVVPQ.I
  3.   3 /174          0  913.09647  0.1174  1.4511   241.5   8/14  SO_4408    A.VSRPEVIL.K
  4.   4 / 29          0  911.10577  0.1337  1.4243   334.5   9/14  SO_1300    S.WGPMILGH.N
  5.   5 / 52          0  914.15110  0.1364  1.4198   304.9   8/14  SO_3695    G.RAIVMPNL.V
  6.   6 /408          0  912.06534  0.1369  1.4190   196.8   7/16  SO_2053    K.GIGIVQLPD.Y
  7.   7 /240          0  913.05333  0.1503  1.3969   224.3   8/14  SO_1421    N.INNPDLVK.I
  8.   8 / 97          0  912.10847  0.1568  1.3862   274.0   8/14  SO_2403    E.KDPVQVIL.E
  9.   9 /354          0  911.07904  0.1583  1.3837   204.1   8/16  SO_0280    G.VGAIVAAYF.Y
 10.  10 /152          0  911.98229  0.1648  1.3730   248.3   8/16  SO_2202    R.NNIQPTPAG.E

 67.  67 /  1          0  914.25442  0.3289  1.1032   479.2  11/14  SO_4207    Q.LMVPMLLP.L

  1.          0  SO_3102 AcrA/AcrE family protein 
  2.          0  SO_0166 general secretion pathway protein, GspD 
  3.          0  SO_4408 virulence regulator BipA 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2648.2648.3.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2648.2648.3.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 03:10 PM, 0.4 sec. on pnode17.emsl.pnl.gov
 (M+H)+ mass = 1370.42700 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO
 total inten = 4435.7, lowest Sp = 183.6, # matched peptides = 71574
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 /347          0 1368.65045  0.0000  2.0624   194.2  13/44  SO_2318    G.AKAWVVKPFQPP.Q
  2.   2 / 23          0 1367.66230  0.1285  1.7974   279.0  18/52  SO_0187    A.IVVGASNAKGKPLI.F
  3.   3 / 25          0 1368.64707  0.2119  1.6253   275.7  17/56  SO_0848    A.AVAAATAVGVTLPVK.M
  4.   4 /197          0 1367.66077  0.2384  1.5707   212.4  13/44  SO_0568    D.AIAYHKLEVPLL.D
  5.   5 /120          0 1368.58106  0.2491  1.5487   229.6  14/48  SO_1563    V.ILIVNTASECGFT.P
  6.   6 /220          0 1368.68697  0.2517  1.5432   208.2  14/52  SO_4519    T.ALSTLAGVVLTPLI.I
  7.   7 /  4          0 1369.50411  0.2587  1.5289   342.2  14/40  SO_1444    D.DNDFSFRELLI.D
  8.   8 /149          0 1370.53201  0.2664  1.5129   223.5  12/40  SO_3084    F.ILDSEYRFVEV.N
  9.   9 / 43          0 1368.56079  0.2710  1.5035   261.8  16/52  SO_4206    I.VQAAADQGVSPLIV.I
 10.  10 /221          0 1368.62266  0.2712  1.5031   208.1  13/40  SO_2148    T.LVEMEFYLPLN.R

102. 102 /  1          0 1369.46420  0.4543  1.1254   454.4  18/44  SO_2156    V.IDNNQVHGFEVP.D

  1.          0  SO_2318 response regulator receiver domain protein 
  2.          0  SO_0187 subfamily S8A unassigned peptidases 
  3.          0  SO_0848 periplasmic nitrate reductase, catalytic  subunit, NapA 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2649.2649.2.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2649.2649.2.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 01:55 PM, 0.4 sec. on pnode21.emsl.pnl.gov
 (M+H)+ mass = 1222.69100 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO
 total inten = 7270.9, lowest Sp = 255.4, # matched peptides = 70022
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 /  1          0 1223.36055  0.0000  3.0044  1421.9  18/22  SO_1779    K.AKFTNATVDAGK.V
  2.   2 / 50          0 1223.27427  0.2259  2.3256   414.5  11/20  SO_4615    K.QAFTNANLTDQ.W
  3.   3 / 54          0 1223.36378  0.3239  2.0314   409.1  11/20  SO_4267    A.AQHEQALVAQK.H
  4.   4 / 83          0 1223.22790  0.3627  1.9146   377.7  11/20  SO_1629    V.QAEQDGFVEAE.-
  5.   5 / 71          0 1224.30709  0.4015  1.7980   388.6  10/16  SO_4750    A.QYRNEWAKE.V
  6.   6 / 79          0 1223.40691  0.4112  1.7690   379.7  11/20  SO_A0163   D.KSATIQRYAGK.E
  7.   7 / 48          0 1224.30540  0.4155  1.7561   414.8  11/20  SO_4387    I.RDYGNGITAKE.L
  8.   8 /101          0 1224.43005  0.4223  1.7356   362.9  10/18  SO_3439    N.SLPEYFVLQK.Q
  9.   9 /164          0 1223.38405  0.4341  1.7001   329.4  10/20  SO_0930    A.QAFIQECQAKG.E
 10.  10 / 17          0 1224.30217  0.4431  1.6732   508.1  13/20  SO_4571    V.VTQVSGFNDEK.D

  1.          0  SO_1779 Outer membrane decaheme cytochrome c (OmcA) 
  2.          0  SO_4615 cytochrome c oxidase biogenesis protein, SenC 
  3.          0  SO_4267 type I restriction-modification system, R subunit, HsdR_2 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2649.2649.3.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2649.2649.3.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 03:10 PM, 0.4 sec. on pnode17.emsl.pnl.gov
 (M+H)+ mass = 1833.53400 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO
 total inten = 7275.4, lowest Sp = 187.5, # matched peptides = 72005
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 / 74          0 1833.17005  0.0000  1.7799   247.4  17/60  SO_4724    H.ECNRVRVTVEGQLLLC.L
  2.   2 / 91          0 1835.05113  0.0632  1.6674   240.2  17/64  SO_2554    R.YAIEATLDAELAQARAK.L
  3.   3 / 78          0 1834.14957  0.0905  1.6187   246.0  17/64  SO_2785    A.KPGLFSKLFSAIGSFFS.S
  4.   4 / 38          0 1835.14710  0.0957  1.6095   267.8  16/60  SO_4623    E.RQILHTIRGVGLSLRD.E
  5.   5 / 32          0 1835.94639  0.1269  1.5540   274.1  17/64  SO_0840    P.GEPDFVKEGDIVTAEQT.L
  6.   6 /167          0 1836.21014  0.1365  1.5370   222.2  16/64  SO_2858    F.VALIFVYAAKANALDKK.Y
  7.   7 / 43          0 1832.05370  0.1678  1.4812   263.9  17/64  SO_2606    F.RQIPVGSVVSYRLDGNA.R
  8.   8 / 13          0 1836.23041  0.1709  1.4757   306.7  22/72  SO_4689    N.YALMALLAVGALFTAVGGP.R
  9.   9 /121          0 1833.88905  0.1831  1.4539   229.9  17/60  SO_0590    S.EAAQSEPEAYKSFNDF.F
 10.  10 / 24          0 1833.31603  0.1848  1.4510   282.6  16/64  SO_0567    V.SLLLAFIFGGLVCLLRP.R

292. 291 /  1          0 1836.14890  0.6224  0.6721   474.3  22/68  SO_1725    K.QVTAFIGPSGCGKSTLLR.C

  1.          0  SO_4724 tungsten cofactor biosynthesis protein 
  2.          0  SO_2554 conserved hypothetical protein 
  3.          0  SO_2785 ribonuclease E (Rne) 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2651.2651.2.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2651.2651.2.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 04:52 PM, 0.6 sec. on P1
 (M+H)+ mass = 955.33900 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO
 total inten = 4144.1, lowest Sp = 189.1, # matched peptides = 67792
 # amino acids = 1389695, # proteins = 4198, D:\Database\ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 / 80          0  955.00394  0.0000  1.7644   276.1   9/14  SO_0231    K.TLETDGYR.A
  2.   2 /394          0  955.07058  0.1471  1.5049   199.9   8/14  SO_3415    G.DVESFMAR.L
  3.   3 /186          0  956.03184  0.2500  1.3233   234.4   8/14  SO_3665    Y.VDETLHEI.H
  4.   4 / 50          0  956.07667  0.2623  1.3017   290.9  10/14  SO_3615    L.FIDEHVPV.M
  5.   5 /237          0  956.11811  0.2662  1.2947   222.3   9/16  SO_1375    A.TLVPGELVQ.A
  6.   6 /126          0  955.04708  0.2687  1.2903   250.8   9/14  SO_3052    P.NTQTYSIK.G
  7.   7 / 57          0  954.06231  0.2978  1.2390   287.8  10/14  SO_2797    K.KSPHKDEL.I
  8.   8 / 33          0  958.09410  0.3141  1.2103   307.8  10/18  SO_1518    R.EGGLAALQAK.V
  9.   9 /173          0  956.07821  0.3333  1.1763   237.2   9/16  SO_2926    Q.DVKAQGLPQ.A
 10.  10 /151          0  955.09021  0.3374  1.1691   244.0  10/16  SO_0766    S.LTHGTLVVD.V

314. 312 /  1          0  957.11257  0.6723  0.5783   539.0  11/14  SO_4254    A.DTPRRIAK.M

  1.          0  SO_0231 ribosomal protein L3, RplC 
  2.          0  SO_3415 bifunctional aspartokinase I / homoserine dehydrogenase I, ThrA 
  3.          0  SO_3665 ABC transporter ATP-binding/permease protein 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2651.2651.3.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2651.2651.3.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 02:50 PM, 0.4 sec. on pnode20.emsl.pnl.gov
 (M+H)+ mass = 1432.50500 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO
 total inten = 4165.2, lowest Sp = 150.3, # matched peptides = 75393
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 /405          0 1434.62246  0.0000  1.4570   155.9  12/44  SO_2541    M.SLIIANQLERYN.G
  2.   2 /339          0 1434.61770  0.0016  1.4547   160.3  13/48  SO_3454    Q.ITPWLDLGYEGGI.R
  3.   3 / 88          0 1433.67438  0.0158  1.4340   200.1  15/52  SO_1900    L.LAGATTLLYEGKPV.G
  4.   4 /235          0 1432.60980  0.0331  1.4088   170.9  15/52  SO_0931    I.HAGAKQVLISHPSS.A
  5.   5 / 56          0 1432.67152  0.0434  1.3938   214.1  14/48  SO_1819    L.TIPDASRKLIQSC.G
  6.   6 /107          0 1432.60011  0.0447  1.3919   195.8  16/52  SO_3138    Q.DADLPVVLLTGFGD.I
  7.   7 /126          0 1429.52133  0.1070  1.3012   191.3  15/48  SO_2045    A.QPSNGFGHSIAQW.Q
  8.   8 /334          0 1429.63936  0.1109  1.2955   160.5  14/48  SO_4122    K.SVIEFIDDAPLLP.E
  9.   9 /464          0 1434.66083  0.1244  1.2758   152.0  12/48  SO_0497    A.LVVGEWGVYVVDV.K
 10.  10 /130          0 1432.69608  0.1413  1.2512   190.2  14/44  SO_0818    P.TLRQQLAFAKQK.L

227. 227 /  1          0 1430.74190  0.4905  0.7424   296.1  19/48  SO_4452    V.KVNAVLLKGMNDK.D

  1.          0  SO_2541 response regulator receiver domain protein 
  2.          0  SO_3454 expressed protein 
  3.          0  SO_1900 propionyl-CoA synthetase, PrpE 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2652.2652.2.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2652.2652.2.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 01:18 PM, 0.3 sec. on pnode22.emsl.pnl.gov
 (M+H)+ mass = 1554.81500 ~ 3.0000 (+2), fragment tol = 0.0000 , AVG/MONO
 total inten = 8049.8, lowest Sp = 138.4, # matched peptides = 70995
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 / 35          0 1555.73530  0.0000  1.8098   229.4  10/24  SO_3428    E.MLGNFSFGDYFKE.D
  2.   2 /  5          0 1555.86779  0.0441  1.7299   334.3  12/26  SO_1498    K.IKNAIIDRGCIIPE.G
  3.   3 / 22          0 1556.81111  0.0829  1.6597   252.4  10/24  SO_4433    L.DKNASLHIDIWML.R
  4.   4 / 57          0 1553.05286  0.1048  1.6201   207.0   9/26  SO_4348    A.KLILVIITVVIIKS.Q
  5.   5 / 38          0 1556.80957  0.1263  1.5812   221.4  10/24  SO_2148    R.PVYLCYLYIANHS.R
  6.   6 /101          0 1556.85255  0.1306  1.5733   185.9  10/28  SO_3961    D.PVGVAARDLSECLLI.Q
  7.   7 / 16          0 1556.89415  0.1523  1.5342   260.7  10/24  SO_0296    T.EHPVLTLMLYNLL.G
  8.   8 /249          0 1553.78203  0.1588  1.5223   159.5   9/28  SO_3472    K.LLQAGGNVLLLDEPT.N
  9.   9 /341          0 1554.75853  0.1748  1.4934   151.0   9/26  SO_2755    S.DCHRSIIVAHNAAF.D
 10.  10 /111          0 1555.66697  0.1770  1.4894   183.6   9/24  SO_3045    A.DLKSDSIEPFQEF.N

 11.  11 /  1          0 1554.73011  0.1878  1.4699   350.0  11/26  SO_2440    V.ERALVQPEGNLQSL.L

  1.          0  SO_3428 alanyl-tRNA synthetase 
  2.          0  SO_1498 glucose-1-phosphate adenylyltransferase, GlgC 
  3.          0  SO_4433 pseudogene: signalling protein with EAL domain, interruption 

=================================== "QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2652.2652.3.out" ==================================

 QC_Shew_07_05_pt5_8Oct07_Griffin_07-07-24.2652.2652.3.out
 TurboSEQUEST - PVM Slave v.27 (rev. 12), (c) 1998-2005
 Molecular Biotechnology, Univ. of Washington, J.Eng/S.Morgan/J.Yates
 Licensed to Thermo Electron Corp.
 10/10/2007, 09:32 AM, 0.7 sec. on pnode18.emsl.pnl.gov
 (M+H)+ mass = 2331.71900 ~ 3.0000 (+3), fragment tol = 0.0000 , AVG/MONO
 total inten = 8049.8, lowest Sp = 251.2, # matched peptides = 71037
 # amino acids = 1389695, # proteins = 4198, /usr/database/ID_001140_4BD5AF39.fasta
 ion series nABY ABCDVWXYZ: 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0
 display top 10/3, ion % = 0.0, CODE = 101010
 Enzyme:None selected

  #   Rank/Sp      Id#     (M+H)+    deltCn   XCorr    Sp    Ions   Reference  Peptide
 ---  --------  --------  --------   ------  ------   -----  -----  ---------  -------
  1.   1 /  1          0 2331.51449  0.0000  6.2796  1640.3  35/84  SO_2897    K.SNTAHLNQEHAGQSHAAMVAQK.V
  2.   2 /  9          0 2330.84487  0.5583  2.7740   451.8  24/92  SO_2347    G.AAKAVAKALPVLAGKLTGNAIRVP.T
  3.   3 /278          0 2332.59717  0.5686  2.7087   279.5  18/80  SO_4741    Q.VLDTAFGDNAAEFLKDIKHVQ.I
  4.   4 /111          0 2331.68227  0.5822  2.6234   319.0  20/72  SO_0380    L.KEETVRAQFDMAFKRFAKQ.M
  5.   5 / 21          0 2333.58670  0.5830  2.6187   401.8  22/80  SO_0902    G.EPRQIIEPGNRPSQVALLGEE.Y
  6.   6 / 65          0 2333.58193  0.5924  2.5598   343.9  19/76  SO_1853    Q.SGEVKVGTKLEIAYFDQYRE.A
  7.   7 / 17          0 2331.70053  0.5980  2.5242   419.4  23/80  SO_0539    F.AWDHWAVGGFLALWVIGYGIV.Q
  8.   8 /  3          0 2332.60532  0.6065  2.4710   528.9  24/84  SO_0162    F.GSQVYLVNTGWTGGPHGIGKRF.D
  9.   9 /  6          0 2332.66550  0.6071  2.4674   480.3  22/80  SO_2094    S.YAARYPSLPIALCGGVFQNQY.L
 10.  10 /228          0 2331.61394  0.6091  2.4546   288.9  20/76  SO_4287    P.LRTDLNERAEFLIEIAGDVR.K

  1.          0  SO_2897 cell division protein (ZipA) 
  2.          0  SO_2347 glyceraldehyde 3-phosphate dehydrogenase family protein 
  3.          0  SO_4741 family C44 non-peptidase homologues