ANDN920101	"alpha-CH chemical shifts (Andersen et al., 1992)"	1575719	"Andersen, N.H., Cao, B. and Chen, C."	"Peptide/protein structure analysis using the chemical shift index method: upfield alpha-CH values reveal dynamic helices and aL sitesJ Biochem. and Biophys. Res. Comm. 184, 1008-1014 (1992)"	"Biochem. and Biophys. Res. Comm. 184, 1008-1014 (1992)"
ARGP820101	"Hydrophobicity index (Argos et al., 1982)"	7151796	"Argos, P., Rao, J.K.M. and Hargrave, P.A."	"Structural prediction of membrane-bound proteinsJ Eur. J. Biochem. 128, 565-575 (1982)"	"Eur. J. Biochem. 128, 565-575 (1982)"
ARGP820102	"Signal sequence helical potential (Argos et al., 1982)"	7151796	"Argos, P., Rao, J.K.M. and Hargrave, P.A."	"Structural prediction of membrane-bound proteinsJ Eur. J. Biochem. 128, 565-575 (1982)"	"Eur. J. Biochem. 128, 565-575 (1982)"
ARGP820103	"Membrane-buried preference parameters (Argos et al., 1982)"	7151796	"Argos, P., Rao, J.K.M. and Hargrave, P.A."	"Structural prediction of membrane-bound proteinsJ Eur. J. Biochem. 128, 565-575 (1982)"	"Eur. J. Biochem. 128, 565-575 (1982)"
BEGF750101	"Conformational parameter of inner helix (Beghin-Dirkx, 1975)"	50789	"Beghin, F. and Dirkx, J."	"Une methode statistique simple de prediction des conformations proteiquesJ Arch. Int. Physiol. Biochim. 83, 167-168 (1975)"	"Arch. Int. Physiol. Biochim. 83, 167-168 (1975)"
BEGF750102	"Conformational parameter of beta-structure (Beghin-Dirkx, 1975)"	50789	"Beghin, F. and Dirkx, J."	"Une methode statistique simple de prediction des conformations proteiquesJ Arch. Int. Physiol. Biochim. 83, 167-168 (1975)"	"Arch. Int. Physiol. Biochim. 83, 167-168 (1975)"
BEGF750103	"Conformational parameter of beta-turn (Beghin-Dirkx, 1975)"	50789	"Beghin, F. and Dirkx, J."	"Une methode statistique simple de prediction des conformations proteiquesJ Arch. Int. Physiol. Biochim. 83, 167-168 (1975)"	"Arch. Int. Physiol. Biochim. 83, 167-168 (1975)"
BHAR880101	"Average flexibility indices (Bhaskaran-Ponnuswamy, 1988)"	0	"Bhaskaran, R. and Ponnuswamy, P.K."	"Positional flexibilities of amino acid residues in globular proteinsJ Int. J. Peptide Protein Res. 32, 241-255 (1988)"	"Int. J. Peptide Protein Res. 32, 241-255 (1988)"
BIGC670101	"Residue volume (Bigelow, 1967)"	6048539	"Bigelow, C.C."	"On the average hydrophobicity of proteins and the relation between it and protein structureJ J. Theor. Biol. 16, 187-211 (1967)"	"J. Theor. Biol. 16, 187-211 (1967)* (Asn Gln 5.0)"
BIOV880101	"Information value for accessibility; average fraction 35% (Biou et al., 1988)"	3237683	"Biou, V., Gibrat, J.F., Levin, J.M., Robson, B. and Garnier, J."	"Secondary structure prediction: combination of three different methodsJ Protein Engineering 2, 185-191 (1988)"	"Protein Engineering 2, 185-191 (1988)"
BIOV880102	"Information value for accessibility; average fraction 23% (Biou et al., 1988)"	3237683	"Biou, V., Gibrat, J.F., Levin, J.M., Robson, B. and Garnier, J."	"Secondary structure prediction: combination of three different methodsJ Protein Engineering 2, 185-191 (1988)"	"Protein Engineering 2, 185-191 (1988)"
BROC820101	"Retention coefficient in TFA (Browne et al., 1982)"	7125223	"Browne, C.A., Bennett, H.P.J. and Solomon, S."	"The isolation of peptides by high-performance liquid chromatography using predicted elution positionsJ Anal. Biochem. 124, 201-208 (1982)"	"Anal. Biochem. 124, 201-208 (1982)"
BROC820102	"Retention coefficient in HFBA (Browne et al., 1982)"	7125223	"Browne, C.A., Bennett, H.P.J. and Solomon, S."	"The isolation of peptides by high-performance liquid chromatography using predicted elution positionsJ Anal. Biochem. 124, 201-208 (1982)"	"Anal. Biochem. 124, 201-208 (1982)"
BULH740101	"Transfer free energy to surface (Bull-Breese, 1974)"	4839053	"Bull, H.B. and Breese, K."	"Surface tension of amino acid solutions: A hydrophobicity scale of the amino acid residuesJ Arch. Biochem. Biophys. 161, 665-670 (1974)"	"Arch. Biochem. Biophys. 161, 665-670 (1974)"
BULH740102	"Apparent partial specific volume (Bull-Breese, 1974)"	4839053	"Bull, H.B. and Breese, K."	"Surface tension of amino acid solutions: A hydrophobicity scale of the amino acid residuesJ Arch. Biochem. Biophys. 161, 665-670 (1974)"	"Arch. Biochem. Biophys. 161, 665-670 (1974)* (Tyr !)"
BUNA790101	"alpha-NH chemical shifts (Bundi-Wuthrich, 1979)"	0	"Bundi, A. and Wuthrich, K."	"1H-nmr parameters of the common amino acid residues measured in aqueous solutions of the linear tetrapeptides H-Gly-Gly-X-L-Ala-OHJ Biopolymers 18, 285-297 (1979)"	"Biopolymers 18, 285-297 (1979)* (Pro !)"
BUNA790102	"alpha-CH chemical shifts (Bundi-Wuthrich, 1979)"	0	"Bundi, A. and Wuthrich, K."	"1H-nmr parameters of the common amino acid residues measured in aqueous solutions of the linear tetrapeptides H-Gly-Gly-X-L-Ala-OHJ Biopolymers 18, 285-297 (1979)"	"Biopolymers 18, 285-297 (1979)"
BUNA790103	"Spin-spin coupling constants 3JHalpha-NH (Bundi-Wuthrich, 1979)"	0	"Bundi, A. and Wuthrich, K."	"1H-nmr parameters of the common amino acid residues measured in aqueous solutions of the linear tetrapeptides H-Gly-Gly-X-L-Ala-OHJ Biopolymers 18, 285-297 (1979)"	"Biopolymers 18, 285-297 (1979)* (Met Pro Trp !)"
BURA740101	"Normalized frequency of alpha-helix (Burgess et al., 1974)"	0	"Burgess, A.W., Ponnuswamy, P.K. and Scheraga, H.A."	"Analysis of conformations of amino acid residues and prediction of backbone topography in proteinsJ Isr. J. Chem. 12, 239-286 (1974)"	"Isr. J. Chem. 12, 239-286 (1974)"
BURA740102	"Normalized frequency of extended structure (Burgess et al., 1974)"	0	"Burgess, A.W., Ponnuswamy, P.K. and Scheraga, H.A."	"Analysis of conformations of amino acid residues and prediction of backbone topography in proteinsJ Isr. J. Chem. 12, 239-286 (1974)"	"Isr. J. Chem. 12, 239-286 (1974)"
CHAM810101	"Steric parameter (Charton, 1981)"	7300379	"Charton, M."	"Protein folding and the genetic code: An alternative quantitative modelJ J. Theor. Biol. 91, 115-123 (1981)"	"J. Theor. Biol. 91, 115-123 (1981)* (Pro !)"
CHAM820101	"Polarizability parameter (Charton-Charton, 1982)"	7183857	"Charton, M. and Charton, B.I."	"The structural dependence of amino acid hydrophobicity parametersJ J. Theor. Biol. 99, 629-644 (1982)"	"J. Theor. Biol. 99, 629-644 (1982)* (Pro 0.018)"
CHAM820102	"Free energy of solution in water, kcal/mole (Charton-Charton, 1982)"	7183857	"Charton, M. and Charton, B.I."	"The structural dependence of amino acid hydrophobicity parametersJ J. Theor. Biol. 99, 629-644 (1982)"	"J. Theor. Biol. 99, 629-644 (1982)* (Asn His Lys Thr !)"
CHAM830101	"The Chou-Fasman parameter of the coil conformation (Charton-Charton, 1983)"	6876837	"Charton, M. and Charton, B."	"The dependence of the Chou-Fasman parameters on amino acid side chain structureJ J. Theor. Biol. 111, 447-450 (1983)"	"J. Theor. Biol. 111, 447-450 (1983)"
CHAM830102	"A parameter defined from the residuals obtained from the best correlation of the Chou-Fasman parameter of beta-sheet (Charton-Charton, 1983)"	6876837	"Charton, M. and Charton, B."	"The dependence of the Chou-Fasman parameters on amino acid side chain structureJ J. Theor. Biol. 111, 447-450 (1983)"	"J. Theor. Biol. 111, 447-450 (1983)* (Pro !)"
CHAM830103	"The number of atoms in the side chain labelled 1+1 (Charton-Charton, 1983)"	6876837	"Charton, M. and Charton, B."	"The dependence of the Chou-Fasman parameters on amino acid side chain structureJ J. Theor. Biol. 111, 447-450 (1983)"	"J. Theor. Biol. 111, 447-450 (1983)* (Pro !)"
CHAM830104	"The number of atoms in the side chain labelled 2+1 (Charton-Charton, 1983)"	0	"Charton, M. and Charton, B."	"The dependence of the Chou-Fasman parameters on amino acid side chain structureJ J. Theor. Biol. 111, 447-450 (1983)"	"J. Theor. Biol. 111, 447-450 (1983)* (Pro !)"
CHAM830105	"The number of atoms in the side chain labelled 3+1 (Charton-Charton, 1983)"	6876837	"Charton, M. and Charton, B."	"The dependence of the Chou-Fasman parameters on amino acid side chain structureJ J. Theor. Biol. 111, 447-450 (1983)"	"J. Theor. Biol. 111, 447-450 (1983)* (Pro !)"
CHAM830106	"The number of bonds in the longest chain (Charton-Charton, 1983)"	6876837	"Charton, M. and Charton, B."	"The dependence of the Chou-Fasman parameters on amino acid side chain structureJ J. Theor. Biol. 111, 447-450 (1983)"	"J. Theor. Biol. 111, 447-450 (1983)* (Pro !)"
CHAM830107	"A parameter of charge transfer capability (Charton-Charton, 1983)"	6876837	"Charton, M. and Charton, B."	"The dependence of the Chou-Fasman parameters on amino acid side chain structureJ J. Theor. Biol. 111, 447-450 (1983)"	"J. Theor. Biol. 111, 447-450 (1983)* (Pro !)"
CHAM830108	"A parameter of charge transfer donor capability (Charton-Charton, 1983)"	6876837	"Charton, M. and Charton, B."	"The dependence of the Chou-Fasman parameters on amino acid side chain structureJ J. Theor. Biol. 111, 447-450 (1983)"	"J. Theor. Biol. 111, 447-450 (1983)* (Pro !)"
CHOC750101	"Average volume of buried residue (Chothia, 1975)"	1118010	"Chothia, C."	"Structural invariants in protein foldingJ Nature 254, 304-308 (1975)"	"Nature 254, 304-308 (1975)* (Arg missing)"
CHOC760101	"Residue accessible surface area in tripeptide (Chothia, 1976)"	994183	"Chothia, C."	"The nature of the accessible and buried surfaces in proteinsJ J. Mol. Biol. 105, 1-14 (1976)"	"J. Mol. Biol. 105, 1-14 (1976)"
CHOC760102	"Residue accessible surface area in folded protein (Chothia, 1976)"	994183	"Chothia, C."	"The nature of the accessible and buried surfaces in proteinsJ J. Mol. Biol. 105, 1-14 (1976)"	"J. Mol. Biol. 105, 1-14 (1976)"
CHOC760103	"Proportion of residues 95% buried (Chothia, 1976)"	994183	"Chothia, C."	"The nature of the accessible and buried surfaces in proteinsJ J. Mol. Biol. 105, 1-14 (1976)"	"J. Mol. Biol. 105, 1-14 (1976)"
CHOC760104	"Proportion of residues 100% buried (Chothia, 1976)"	994183	"Chothia, C."	"The nature of the accessible and buried surfaces in proteinsJ J. Mol. Biol. 105, 1-14 (1976)"	"J. Mol. Biol. 105, 1-14 (1976)* (normalized by the total number)"
CHOP780101	"Normalized frequency of beta-turn (Chou-Fasman, 1978a)"	354496	"Chou, P.Y. and Fasman, G.D."	"Empirical predictions of protein conformationJ Ann. Rev. Biochem. 47, 251-276 (1978)"	"Ann. Rev. Biochem. 47, 251-276 (1978)"
CHOP780201	"Normalized frequency of alpha-helix (Chou-Fasman, 1978b)"	364941	"Chou, P.Y. and Fasman, G.D."	"Prediction of the secondary structure of proteins from their amino acid sequenceJ Adv. Enzymol. 47, 45-148 (1978)"	"Adv. Enzymol. 47, 45-148 (1978)"
CHOP780202	"Normalized frequency of beta-sheet (Chou-Fasman, 1978b)"	364941	"Chou, P.Y. and Fasman, G.D."	"Prediction of the secondary structure of proteins from their amino acid sequenceJ Adv. Enzymol. 47, 45-148 (1978)"	"Adv. Enzymol. 47, 45-148 (1978)"
CHOP780203	"Normalized frequency of beta-turn (Chou-Fasman, 1978b)"	364941	"Chou, P.Y. and Fasman, G.D."	"Prediction of the secondary structure of proteins from their amino acid sequenceJ Adv. Enzymol. 47, 45-148 (1978)"	"Adv. Enzymol. 47, 45-148 (1978)"
CHOP780204	"Normalized frequency of N-terminal helix (Chou-Fasman, 1978b)"	364941	"Chou, P.Y. and Fasman, G.D."	"Prediction of the secondary structure of proteins from their amino acid sequenceJ Adv. Enzymol. 47, 45-148 (1978)"	"Adv. Enzymol. 47, 45-148 (1978)"
CHOP780205	"Normalized frequency of C-terminal helix (Chou-Fasman, 1978b)"	364941	"Chou, P.Y. and Fasman, G.D."	"Prediction of the secondary structure of proteins from their amino acid sequenceJ Adv. Enzymol. 47, 45-148 (1978)"	"Adv. Enzymol. 47, 45-148 (1978)"
CHOP780206	"Normalized frequency of N-terminal non helical region (Chou-Fasman, 1978b)"	364941	"Chou, P.Y. and Fasman, G.D."	"Prediction of the secondary structure of proteins from their amino acid sequenceJ Adv. Enzymol. 47, 45-148 (1978)"	"Adv. Enzymol. 47, 45-148 (1978)"
CHOP780207	"Normalized frequency of C-terminal non helical region (Chou-Fasman, 1978b)"	364941	"Chou, P.Y. and Fasman, G.D."	"Prediction of the secondary structure of proteins from their amino acid sequenceJ Adv. Enzymol. 47, 45-148 (1978)"	"Adv. Enzymol. 47, 45-148 (1978)"
CHOP780208	"Normalized frequency of N-terminal beta-sheet (Chou-Fasman, 1978b)"	364941	"Chou, P.Y. and Fasman, G.D."	"Prediction of the secondary structure of proteins from their amino acid sequenceJ Adv. Enzymol. 47, 45-148 (1978)"	"Adv. Enzymol. 47, 45-148 (1978)"
CHOP780209	"Normalized frequency of C-terminal beta-sheet (Chou-Fasman, 1978b)"	364941	"Chou, P.Y. and Fasman, G.D."	"Prediction of the secondary structure of proteins from their amino acid sequenceJ Adv. Enzymol. 47, 45-148 (1978)"	"Adv. Enzymol. 47, 45-148 (1978)"
CHOP780210	"Normalized frequency of N-terminal non beta region (Chou-Fasman, 1978b)"	364941	"Chou, P.Y. and Fasman, G.D."	"Prediction of the secondary structure of proteins from their amino acid sequenceJ Adv. Enzymol. 47, 45-148 (1978)"	"Adv. Enzymol. 47, 45-148 (1978)"
CHOP780211	"Normalized frequency of C-terminal non beta region (Chou-Fasman, 1978b)"	364941	"Chou, P.Y. and Fasman, G.D."	"Prediction of the secondary structure of proteins from their amino acid sequenceJ Adv. Enzymol. 47, 45-148 (1978)"	"Adv. Enzymol. 47, 45-148 (1978)"
CHOP780212	"Frequency of the 1st residue in turn (Chou-Fasman, 1978b)"	364941	"Chou, P.Y. and Fasman, G.D."	"Prediction of the secondary structure of proteins from their amino acid sequenceJ Adv. Enzymol. 47, 45-148 (1978)"	"Adv. Enzymol. 47, 45-148 (1978)"
CHOP780213	"Frequency of the 2nd residue in turn (Chou-Fasman, 1978b)"	364941	"Chou, P.Y. and Fasman, G.D."	"Prediction of the secondary structure of proteins from their amino acid sequenceJ Adv. Enzymol. 47, 45-148 (1978)"	"Adv. Enzymol. 47, 45-148 (1978)"
CHOP780214	"Frequency of the 3rd residue in turn (Chou-Fasman, 1978b)"	364941	"Chou, P.Y. and Fasman, G.D."	"Prediction of the secondary structure of proteins from their amino acid sequenceJ Adv. Enzymol. 47, 45-148 (1978)"	"Adv. Enzymol. 47, 45-148 (1978)"
CHOP780215	"Frequency of the 4th residue in turn (Chou-Fasman, 1978b)"	364941	"Chou, P.Y. and Fasman, G.D."	"Prediction of the secondary structure of proteins from their amino acid sequenceJ Adv. Enzymol. 47, 45-148 (1978)"	"Adv. Enzymol. 47, 45-148 (1978)"
CHOP780216	"Normalized frequency of the 2nd and 3rd residues in turn (Chou-Fasman, 1978b)"	364941	"Chou, P.Y. and Fasman, G.D."	"Prediction of the secondary structure of proteins from their amino acid sequenceJ Adv. Enzymol. 47, 45-148 (1978)"	"Adv. Enzymol. 47, 45-148 (1978)"
CIDH920101	"Normalized hydrophobicity scales for alpha-proteins (Cid et al., 1992)"	1518784	"Cid, H., Bunster, M., Canales, M. and Gazitua, F."	"Hydrophobicity and structural classes in proteinsJ Protein Engineering 5, 373-375 (1992)"	"Protein Engineering 5, 373-375 (1992)"
CIDH920102	"Normalized hydrophobicity scales for beta-proteins (Cid et al., 1992)"	1518784	"Cid, H., Bunster, M., Canales, M. and Gazitua, F."	"Hydrophobicity and structural classes in proteinsJ Protein Engineering 5, 373-375 (1992)"	"Protein Engineering 5, 373-375 (1992)"
CIDH920103	"Normalized hydrophobicity scales for alpha+beta-proteins (Cid et al., 1992)"	1518784	"Cid, H., Bunster, M., Canales, M. and Gazitua, F."	"Hydrophobicity and structural classes in proteinsJ Protein Engineering 5, 373-375 (1992)"	"Protein Engineering 5, 373-375 (1992)"
CIDH920104	"Normalized hydrophobicity scales for alpha/beta-proteins (Cid et al., 1992)"	1518784	"Cid, H., Bunster, M., Canales, M. and Gazitua, F."	"Hydrophobicity and structural classes in proteinsJ Protein Engineering 5, 373-375 (1992)"	"Protein Engineering 5, 373-375 (1992)"
CIDH920105	"Normalized average hydrophobicity scales (Cid et al., 1992)"	1518784	"Cid, H., Bunster, M., Canales, M. and Gazitua, F."	"Hydrophobicity and structural classes in proteinsJ Protein Engineering 5, 373-375 (1992)"	"Protein Engineering 5, 373-375 (1992)"
COHE430101	"Partial specific volume (Cohn-Edsall, 1943)"	0	"Cohn, E.J. and Edsall, J.T."	"J ""Protein, Amino Acid, and Peptides"", Reinhold, New York (1943)"	"Protein, Amino Acid, and Peptides, Reinhold, New York (1943)"
CRAJ730101	"Normalized frequency of middle helix (Crawford et al., 1973)"	4510294	"Crawford, J.L., Lipscomb, W.N. and Schellman, C.G."	"The reverse turn as a polypeptide conformation in globular proteinsJ Proc. Natl. Acad. Sci. USA 70, 538-542 (1973)"	"Proc. Natl. Acad. Sci. USA 70, 538-542 (1973)* Reported values normalized by the total percentage"
CRAJ730102	"Normalized frequency of beta-sheet (Crawford et al., 1973)"	4510294	"Crawford, J.L., Lipscomb, W.N. and Schellman, C.G."	"The reverse turn as a polypeptide conformation in globular proteinsJ Proc. Natl. Acad. Sci. USA 70, 538-542 (1973)"	"Proc. Natl. Acad. Sci. USA 70, 538-542 (1973)* Reported values normalized by the total percentage"
CRAJ730103	"Normalized frequency of turn (Crawford et al., 1973)"	4510294	"Crawford, J.L., Lipscomb, W.N. and Schellman, C.G."	"The reverse turn as a polypeptide conformation in globular proteinsJ Proc. Natl. Acad. Sci. USA 70, 538-542 (1973)"	"Proc. Natl. Acad. Sci. USA 70, 538-542 (1973)* Reported values normalized by the total percentage"
DAWD720101	"Size (Dawson, 1972)"	0	"Dawson, D.M."	"J In ""The Biochemical Genetics of Man"" (Brock, D.J.H. and Mayo, O., eds.),"	"In ""The Biochemical Genetics of Man"" (Brock, D.J.H. and Mayo, O., eds.), Academic Press, New York, pp.1-38 (1972)"
DAYM780101	"Amino acid composition (Dayhoff et al., 1978a)"	0	"Dayhoff, M.O., Hunt, L.T. and Hurst-Calderone, S."	"Composition of proteinsJ In ""Atlas of Protein Sequence and Structure"", Vol.5, Suppl.3 (Dayhoff, M.O.,"	"In ""Atlas of Protein Sequence and Structure"", Vol.5, Suppl.3 (Dayhoff, M.O., ed.), National Biomedical Research Foundation, Washington, D.C., p.363 (1978)"
DAYM780201	"Relative mutability (Dayhoff et al., 1978b)"	0	"Dayhoff, M.O., Schwartz, R.M. and Orcutt, B.C."	"A model of evolutionary change in proteinsJ In ""Atlas of Protein Sequence and Structure"", Vol.5, Suppl.3 (Dayhoff, M.O.,"	"In ""Atlas of Protein Sequence and Structure"", Vol.5, Suppl.3 (Dayhoff, M.O., ed.), National Biomedical Research Foundation, Washington, D.C. pp. 345-352 (1978)"
DESM900101	"Membrane preference for cytochrome b: MPH89 (Degli Esposti et al., 1990)"	2364947	"Degli Esposti, M., Crimi, M. and Venturoli, G."	"A critical evaluation of the hydropathy profile of membrane proteinsJ Eur. J. Biochem. 190, 207-219 (1990)"	"Eur. J. Biochem. 190, 207-219 (1990)"
DESM900102	"Average membrane preference: AMP07 (Degli Esposti et al., 1990)"	2364947	"Degli Esposti, M., Crimi, M. and Venturoli, G."	"A critical evaluation of the hydropathy profile of membrane proteinsJ Eur. J. Biochem. 190, 207-219 (1990)"	"Eur. J. Biochem. 190, 207-219 (1990)"
EISD840101	"Consensus normalized hydrophobicity scale (Eisenberg, 1984)"	6383201	"Eisenberg, D."	"Three-dimensional structure of membrane and surface proteinsJ Ann. Rev. Biochem. 53, 595-623 (1984)"	"Ann. Rev. Biochem. 53, 595-623 (1984)* Original references:* Eisenberg, D., Weiss, R.M., Terwilliger, T.C. and Wilcox, W.* Faraday Symp. Chem. Soc. 17, 109-120 (1982)* Eisenberg, D., Weiss, R.M. and Terwilliger, T.C.* The hydrophobic moment detects periodicity in protein hydrophobicity* Proc. Natl. Acad. Sci. USA 81, 140-144 (1984)"
EISD860101	"Solvation free energy (Eisenberg-McLachlan, 1986)"	0	"Eisenberg, D. and McLachlan, A.D."	"Solvation energy in protein folding and bindingJ Nature 319, 199-203 (1986)"	"Nature 319, 199-203 (1986)"
EISD860102	"Atom-based hydrophobic moment (Eisenberg-McLachlan, 1986)"	0	"Eisenberg, D. and McLachlan, A.D."	"Solvation energy in protein folding and bindingJ Nature 319, 199-203 (1986)"	"Nature 319, 199-203 (1986)"
EISD860103	"Direction of hydrophobic moment (Eisenberg-McLachlan, 1986)"	0	"Eisenberg, D. and McLachlan, A.D."	"Solvation energy in protein folding and bindingJ Nature 319, 199-203 (1986)"	"Nature 319, 199-203 (1986)* (Gly Ala missing)"
FASG760101	"Molecular weight (Fasman, 1976)"	0	"Fasman, G.D., ed."	"J ""Handbook of Biochemistry and Molecular Biology"", 3rd ed., Proteins - Volume"	"Handbook of Biochemistry and Molecular Biology, 3rd ed., Proteins - Volume 1, CRC Press, Cleveland (1976)"
FASG760102	"Melting point (Fasman, 1976)"	0	"Fasman, G.D., ed."	"J ""Handbook of Biochemistry and Molecular Biology"", 3rd ed., Proteins - Volume"	"Handbook of Biochemistry and Molecular Biology, 3rd ed., Proteins - Volume 1, CRC Press, Cleveland (1976)"
FASG760103	"Optical rotation (Fasman, 1976)"	0	"Fasman, G.D., ed."	"J ""Handbook of Biochemistry and Molecular Biology"", 3rd ed., Proteins - Volume"	"Handbook of Biochemistry and Molecular Biology, 3rd ed., Proteins - Volume 1, CRC Press, Cleveland (1976)"
FASG760104	"pK-N (Fasman, 1976)"	0	"Fasman, G.D., ed."	"J ""Handbook of Biochemistry and Molecular Biology"", 3rd ed., Proteins - Volume"	"Handbook of Biochemistry and Molecular Biology, 3rd ed., Proteins - Volume 1, CRC Press, Cleveland (1976)"
FASG760105	"pK-C (Fasman, 1976)"	0	"Fasman, G.D., ed."	"J ""Handbook of Biochemistry and Molecular Biology"", 3rd ed., Proteins - Volume"	"Handbook of Biochemistry and Molecular Biology, 3rd ed., Proteins - Volume 1, CRC Press, Cleveland (1976)"
FAUJ830101	"Hydrophobic parameter pi (Fauchere-Pliska, 1983)"	0	"Fauchere, J.L. and Pliska, V."	"Hydrophobic parameters pi of amino-acid side chains from the partitioning of N-acetyl-amino-acid amidesJ Eur. J. Med. Chem. 18, 369-375 (1983)"	"Eur. J. Med. Chem. 18, 369-375 (1983)"
FAUJ880101	"Graph shape index (Fauchere et al., 1988)"	3209351	"Fauchere, J.L., Charton, M., Kier, L.B., Verloop, A. and Pliska, V."	"Amino acid side chain parameters for correlation studies in biology and pharmacologyJ Int. J. Peptide Protein Res. 32, 269-278 (1988)"	"Int. J. Peptide Protein Res. 32, 269-278 (1988)* Original reference:* Kier, L.B.* Quant. Struct. Act. Relat. 6, 117-122 (1987)"
FAUJ880102	"Smoothed upsilon steric parameter (Fauchere et al., 1988)"	3209351	"Fauchere, J.L., Charton, M., Kier, L.B., Verloop, A. and Pliska, V."	"Amino acid side chain parameters for correlation studies in biology and pharmacologyJ Int. J. Peptide Protein Res. 32, 269-278 (1988)"	"Int. J. Peptide Protein Res. 32, 269-278 (1988)* (Pro missing)* Original reference of these two data:* Fauchere, L.J.* In ""QSAR in Design of Bioactive Compounds"", (Kuchar, M., ed.),* Prous, Barcelona pp.135-144 (1984)"
FAUJ880103	"Normalized van der Waals volume (Fauchere et al., 1988)"	3209351	"Fauchere, J.L., Charton, M., Kier, L.B., Verloop, A. and Pliska, V."	"Amino acid side chain parameters for correlation studies in biology and pharmacologyJ Int. J. Peptide Protein Res. 32, 269-278 (1988)"	"Int. J. Peptide Protein Res. 32, 269-278 (1988)* (Pro !)* Original reference of these two data:* Fauchere, L.J.* In ""QSAR in Design of Bioactive Compounds"", (Kuchar, M., ed.),* Prous, Barcelona pp.135-144 (1984)"
FAUJ880104	"STERIMOL length of the side chain (Fauchere et al., 1988)"	3209351	"Fauchere, J.L., Charton, M., Kier, L.B., Verloop, A. and Pliska, V."	"Amino acid side chain parameters for correlation studies in biology and pharmacologyJ Int. J. Peptide Protein Res. 32, 269-278 (1988)"	"Int. J. Peptide Protein Res. 32, 269-278 (1988)* (Pro !)* Original reference of these three data:* Verloop, A.* In ""IUPAC, Pesticide Chemistry"", Vol.1* (Miyamoto, J. and Kearney, P.C., eds.),Pergamon, Oxford pp.339-334 (1983)"
FAUJ880105	"STERIMOL minimum width of the side chain (Fauchere et al., 1988)"	3209351	"Fauchere, J.L., Charton, M., Kier, L.B., Verloop, A. and Pliska, V."	"Amino acid side chain parameters for correlation studies in biology and pharmacologyJ Int. J. Peptide Protein Res. 32, 269-278 (1988)"	"Int. J. Peptide Protein Res. 32, 269-278 (1988)* (Pro !)* Original reference of these three data:* Verloop, A.* In ""IUPAC, Pesticide Chemistry"", Vol.1* (Miyamoto, J. and Kearney, P.C., eds.),Pergamon, Oxford pp.339-334 (1983)"
FAUJ880106	"STERIMOL maximum width of the side chain (Fauchere et al., 1988)"	3209351	"Fauchere, J.L., Charton, M., Kier, L.B., Verloop, A. and Pliska, V."	"Amino acid side chain parameters for correlation studies in biology and pharmacologyJ Int. J. Peptide Protein Res. 32, 269-278 (1988)"	"Int. J. Peptide Protein Res. 32, 269-278 (1988)* Original reference of these three data:* Verloop, A.* In ""IUPAC, Pesticide Chemistry"", Vol.1* (Miyamoto, J. and Kearney, P.C., eds.),Pergamon, Oxford pp.339-334 (1983)"
FAUJ880107	"N.m.r. chemical shift of alpha-carbon (Fauchere et al., 1988)"	3209351	"Fauchere, J.L., Charton, M., Kier, L.B., Verloop, A. and Pliska, V."	"Amino acid side chain parameters for correlation studies in biology and pharmacologyJ Int. J. Peptide Protein Res. 32, 269-278 (1988)"	"Int. J. Peptide Protein Res. 32, 269-278 (1988)* Original reference:* Fauchere, J.L. and Lauterwein, J.* Quant. Struct. Act. Rel. 4, 11-13 (1985)"
FAUJ880108	"Localized electrical effect (Fauchere et al., 1988)"	3209351	"Fauchere, J.L., Charton, M., Kier, L.B., Verloop, A. and Pliska, V."	"Amino acid side chain parameters for correlation studies in biology and pharmacologyJ Int. J. Peptide Protein Res. 32, 269-278 (1988)"	"Int. J. Peptide Protein Res. 32, 269-278 (1988)* (Pro missing)* Original reference:* Charton, M. and Charton, B.I.* J. Theor. Biol. 102, 121-134 (1983)"
FAUJ880109	"Number of hydrogen bond donors (Fauchere et al., 1988)"	3209351	"Fauchere, J.L., Charton, M., Kier, L.B., Verloop, A. and Pliska, V."	"Amino acid side chain parameters for correlation studies in biology and pharmacologyJ Int. J. Peptide Protein Res. 32, 269-278 (1988)"	"Int. J. Peptide Protein Res. 32, 269-278 (1988)* Original reference of these two data:* IUPAC-IUB Joint Commission on Biochemical Nomenclature* Eur. J. Biochem. 138, 9-37 (1984)"
FAUJ880110	"Number of full nonbonding orbitals (Fauchere et al., 1988)"	3209351	"Fauchere, J.L., Charton, M., Kier, L.B., Verloop, A. and Pliska, V."	"Amino acid side chain parameters for correlation studies in biology and pharmacologyJ Int. J. Peptide Protein Res. 32, 269-278 (1988)"	"Int. J. Peptide Protein Res. 32, 269-278 (1988)* Original reference of these two data:* IUPAC-IUB Joint Commission on Biochemical Nomenclature* Eur. J. Biochem. 138, 9-37 (1984)"
FAUJ880111	"Positive charge (Fauchere et al., 1988)"	3209351	"Fauchere, J.L., Charton, M., Kier, L.B., Verloop, A. and Pliska, V."	"Amino acid side chain parameters for correlation studies in biology and pharmacologyJ Int. J. Peptide Protein Res. 32, 269-278 (1988)"	"Int. J. Peptide Protein Res. 32, 269-278 (1988)"
FAUJ880112	"Negative charge (Fauchere et al., 1988)"	3209351	"Fauchere, J.L., Charton, M., Kier, L.B., Verloop, A. and Pliska, V."	"Amino acid side chain parameters for correlation studies in biology and pharmacologyJ Int. J. Peptide Protein Res. 32, 269-278 (1988)"	"Int. J. Peptide Protein Res. 32, 269-278 (1988)"
FAUJ880113	"pK-a(RCOOH) (Fauchere et al., 1988)"	3209351	"Fauchere, J.L., Charton, M., Kier, L.B., Verloop, A. and Pliska, V."	"Amino acid side chain parameters for correlation studies in biology and pharmacologyJ Int. J. Peptide Protein Res. 32, 269-278 (1988)"	"Int. J. Peptide Protein Res. 32, 269-278 (1988)* (Pro missing)"
FINA770101	"Helix-coil equilibrium constant (Finkelstein-Ptitsyn, 1977)"	843599	"Finkelstein, A.V. and Ptitsyn, O.B."	"Theory of protein molecule self-organization. II. A comparison of calculated thermodynamic parameters of local secondary structures with experimentsJ Biopolymers 16, 497-524 (1977)"	"Biopolymers 16, 497-524 (1977)* (Pro 0.096)"
FINA910101	"Helix initiation parameter at posision i-1 (Finkelstein et al., 1991)"	1946339	"Finkelstein, A.V., Badretdinov, A.Y. and Ptitsyn, O.B."	"Physical reasons for secondary structure stability: alpha-helices in short peptidesJ PROTEINS 10, 287-299 (1991)"	"PROTEINS 10, 287-299 (1991)* In these four data, each of Arg, Asp, Glu, His and Lys has two value.* See comment lines.* Arg pH < 12 ( 1 when pH > 12 )* Asp pH > 4 ( 1.7 when pH < 4 )* Glu pH > 4.3 ( 1 when pH < 4.3 )* His pH > 6.3 ( 0.7 when pH < 6.3 )* Lys pH < 10.5 ( 1 when pH > 10.5 )"
FINA910102	"Helix initiation parameter at posision i,i+1,i+2 (Finkelstein et al., 1991)"	1946339	"Finkelstein, A.V., Badretdinov, A.Y. and Ptitsyn, O.B."	"Physical reasons for secondary structure stability: alpha-helices in short peptidesJ PROTEINS 10, 287-299 (1991)"	"PROTEINS 10, 287-299 (1991)* In these four data, each of Arg, Asp, Glu, His and Lys has two value.* See comment lines.* Arg pH < 12 ( 1 when pH > 12 )* Asp pH > 4 ( 1 when pH < 4 )* Glu pH > 4.3 ( 1 when pH < 4.3 )* His pH > 6.3 ( 0.7 when pH < 6.3 )* Lys pH < 10.5 ( 1 when pH > 10.5 )* (Pro !)"
FINA910103	"Helix termination parameter at posision j-2,j-1,j (Finkelstein et al., 1991)"	1946339	"Finkelstein, A.V., Badretdinov, A.Y. and Ptitsyn, O.B."	"Physical reasons for secondary structure stability: alpha-helices in short peptidesJ PROTEINS 10, 287-299 (1991)"	"PROTEINS 10, 287-299 (1991)* In these four data, each of Arg, Asp, Glu, His and Lys has two value.* See comment lines.* Arg pH < 12 ( 1 when pH > 12 )* Asp pH > 4 ( 1 when pH < 4 )* Glu pH > 4.3 ( 1 when pH < 4.3 )* His pH > 6.3 ( 1.7 when pH < 6.3 )* Lys pH < 10.5 ( 1 when pH > 10.5 )"
FINA910104	"Helix termination parameter at posision j+1 (Finkelstein et al., 1991)"	1946339	"Finkelstein, A.V., Badretdinov, A.Y. and Ptitsyn, O.B."	"Physical reasons for secondary structure stability: alpha-helices in short peptidesJ PROTEINS 10, 287-299 (1991)"	"PROTEINS 10, 287-299 (1991)* In these four data, each of Arg, Asp, Glu, His and Lys has two value.* See comment lines.* Arg pH < 12 ( 1 when pH > 12 )* Asp pH > 4 ( 1 when pH < 4 )* Glu pH > 4.3 ( 1 when pH < 4.3 )* His pH > 6.3 ( 1.7 when pH < 6.3 )* Lys pH < 10.5 ( 1 when pH > 10.5 )"
GARJ730101	"Partition coefficient (Garel et al., 1973)"	4700470	"Garel, J.P., Filliol, D. and Mandel, P."	"Coefficients de partage d'aminoacides, nucleobases, nucleosides et nucleotides dans un systeme solvant salinJ J. Chromatogr. 78, 381-391 (1973)"	"J. Chromatogr. 78, 381-391 (1973)"
GEIM800101	"Alpha-helix indices (Geisow-Roberts, 1980)"	0	"Geisow, M.J. and Roberts, R.D.B."	"Amino acid preferences for secondary structure vary with protein classJ Int. J. Biol. Macromol. 2, 387-389 (1980)"	"Int. J. Biol. Macromol. 2, 387-389 (1980)"
GEIM800102	"Alpha-helix indices for alpha-proteins (Geisow-Roberts, 1980)"	0	"Geisow, M.J. and Roberts, R.D.B."	"Amino acid preferences for secondary structure vary with protein classJ Int. J. Biol. Macromol. 2, 387-389 (1980)"	"Int. J. Biol. Macromol. 2, 387-389 (1980)"
GEIM800103	"Alpha-helix indices for beta-proteins (Geisow-Roberts, 1980)"	0	"Geisow, M.J. and Roberts, R.D.B."	"Amino acid preferences for secondary structure vary with protein classJ Int. J. Biol. Macromol. 2, 387-389 (1980)"	"Int. J. Biol. Macromol. 2, 387-389 (1980)"
GEIM800104	"Alpha-helix indices for alpha/beta-proteins (Geisow-Roberts, 1980)"	0	"Geisow, M.J. and Roberts, R.D.B."	"Amino acid preferences for secondary structure vary with protein classJ Int. J. Biol. Macromol. 2, 387-389 (1980)"	"Int. J. Biol. Macromol. 2, 387-389 (1980)"
GEIM800105	"Beta-strand indices (Geisow-Roberts, 1980)"	0	"Geisow, M.J. and Roberts, R.D.B."	"Amino acid preferences for secondary structure vary with protein classJ Int. J. Biol. Macromol. 2, 387-389 (1980)"	"Int. J. Biol. Macromol. 2, 387-389 (1980)"
GEIM800106	"Beta-strand indices for beta-proteins (Geisow-Roberts, 1980)"	0	"Geisow, M.J. and Roberts, R.D.B."	"Amino acid preferences for secondary structure vary with protein classJ Int. J. Biol. Macromol. 2, 387-389 (1980)"	"Int. J. Biol. Macromol. 2, 387-389 (1980)"
GEIM800107	"Beta-strand indices for alpha/beta-proteins (Geisow-Roberts, 1980)"	0	"Geisow, M.J. and Roberts, R.D.B."	"Amino acid preferences for secondary structure vary with protein classJ Int. J. Biol. Macromol. 2, 387-389 (1980)"	"Int. J. Biol. Macromol. 2, 387-389 (1980)"
GEIM800108	"Aperiodic indices (Geisow-Roberts, 1980)"	0	"Geisow, M.J. and Roberts, R.D.B."	"Amino acid preferences for secondary structure vary with protein classJ Int. J. Biol. Macromol. 2, 387-389 (1980)"	"Int. J. Biol. Macromol. 2, 387-389 (1980)"
GEIM800109	"Aperiodic indices for alpha-proteins (Geisow-Roberts, 1980)"	0	"Geisow, M.J. and Roberts, R.D.B."	"Amino acid preferences for secondary structure vary with protein classJ Int. J. Biol. Macromol. 2, 387-389 (1980)"	"Int. J. Biol. Macromol. 2, 387-389 (1980)"
GEIM800110	"Aperiodic indices for beta-proteins (Geisow-Roberts, 1980)"	0	"Geisow, M.J. and Roberts, R.D.B."	"Amino acid preferences for secondary structure vary with protein classJ Int. J. Biol. Macromol. 2, 387-389 (1980)"	"Int. J. Biol. Macromol. 2, 387-389 (1980)"
GEIM800111	"Aperiodic indices for alpha/beta-proteins (Geisow-Roberts, 1980)"	0	"Geisow, M.J. and Roberts, R.D.B."	"Amino acid preferences for secondary structure vary with protein classJ Int. J. Biol. Macromol. 2, 387-389 (1980)"	"Int. J. Biol. Macromol. 2, 387-389 (1980)"
GOLD730101	"Hydrophobicity factor (Goldsack-Chalifoux, 1973)"	4354159	"Goldsack, D.E. and Chalifoux, R.C."	"Contribution of the free energy of mixing of hydrophobic side chains to the stability of the tertiary structureJ J. Theor. Biol. 39, 645-651 (1973)"	"J. Theor. Biol. 39, 645-651 (1973)* (Asn Gln !)"
GOLD730102	"Residue volume (Goldsack-Chalifoux, 1973)"	4354159	"Goldsack, D.E. and Chalifoux, R.C."	"Contribution of the free energy of mixing of hydrophobic side chains to the stability of the tertiary structureJ J. Theor. Biol. 39, 645-651 (1973)"	"J. Theor. Biol. 39, 645-651 (1973)* (Asn Gln 8.8)"
GRAR740101	"Composition (Grantham, 1974)"	4843792	"Grantham, R."	"Amino acid difference formula to help explain protein evolutionJ Science 185, 862-864 (1974)"	"Science 185, 862-864 (1974)* (Atomic weight ratio of noncarbons to carbons in the side chain)"
GRAR740102	"Polarity (Grantham, 1974)"	4843792	"Grantham, R."	"Amino acid difference formula to help explain protein evolutionJ Science 185, 862-864 (1974)"	"Science 185, 862-864 (1974)"
GRAR740103	"Volume (Grantham, 1974)"	4843792	"Grantham, R."	"Amino acid difference formula to help explain protein evolutionJ Science 185, 862-864 (1974)"	"Science 185, 862-864 (1974)"
GUYH850101	"Partition energy (Guy, 1985)"	3978191	"Guy, H.R."	"Amino acid side-chain partition energies and distribution of residues in soluble proteinsJ Biophys. J. 47, 61-70 (1985)"	"Biophys. J. 47, 61-70 (1985)"
HOPA770101	"Hydration number (Hopfinger, 1971), Cited by Charton-Charton (1982)"	0	"Hopfinger, A.J."	"J ""Intermolecular Interactions and Biomolecular Organizations"", Wiley, New York"	"Intermolecular Interactions and Biomolecular Organizations, Wiley, New York (1977)* Cited by Charton-Charton (1982)* (Cys !)"
HOPT810101	"Hydrophilicity value (Hopp-Woods, 1981)"	6167991	"Hopp, T.P. and Woods, K.R."	"Prediction of protein antigenic determinants from amino acid sequeccesJ Proc. Natl. Acad. Sci. USA 78, 3824-3828 (1981)"	"Proc. Natl. Acad. Sci. USA 78, 3824-3828 (1981)"
HUTJ700101	"Heat capacity (Hutchens, 1970)"	0	"Hutchens, J.O."	"Heat capacities, absolute entropies, and entropies of formation of amino acids and related compoundsJ In ""Handbook of Biochemistry"", 2nd ed. (Sober, H.A., ed.), Chemical Rubber"	"In ""Handbook of Biochemistry"", 2nd ed. (Sober, H.A., ed.), Chemical Rubber Co., Cleveland, Ohio, pp. B60-B61 (1970)"
HUTJ700102	"Absolute entropy (Hutchens, 1970)"	0	"Hutchens, J.O."	"Heat capacities, absolute entropies, and entropies of formation of amino acids and related compoundsJ In ""Handbook of Biochemistry"", 2nd ed. (Sober, H.A., ed.), Chemical Rubber"	"In ""Handbook of Biochemistry"", 2nd ed. (Sober, H.A., ed.), Chemical Rubber Co., Cleveland, Ohio, pp. B60-B61 (1970)"
HUTJ700103	"Entropy of formation (Hutchens, 1970)"	0	"Hutchens, J.O."	"Heat capacities, absolute entropies, and entropies of formation of amino acids and related compoundsJ In ""Handbook of Biochemistry"", 2nd ed. (Sober, H.A., ed.), Chemical Rubber"	"In ""Handbook of Biochemistry"", 2nd ed. (Sober, H.A., ed.), Chemical Rubber Co., Cleveland, Ohio, pp. B60-B61 (1970)"
ISOY800101	"Normalized relative frequency of alpha-helix (Isogai et al., 1980)"	7378550	"Isogai, Y., Nemethy, G., Rackovsky, S., Leach, S.J. and Scheraga,H.A"	"Characterization of multiple bends in proteinsJ Biopolymers 19, 1183-1210 (1980)"	"Biopolymers 19, 1183-1210 (1980)* Recalculated by Kidera using a different set of proteins"
ISOY800102	"Normalized relative frequency of extended structure (Isogai et al., 1980)"	7378550	"Isogai, Y., Nemethy, G., Rackovsky, S., Leach, S.J. and Scheraga,H.A"	"Characterization of multiple bends in proteinsJ Biopolymers 19, 1183-1210 (1980)"	"Biopolymers 19, 1183-1210 (1980)* Recalculated by Kidera using a different set of proteins"
ISOY800103	"Normalized relative frequency of bend (Isogai et al., 1980)"	7378550	"Isogai, Y., Nemethy, G., Rackovsky, S., Leach, S.J. and Scheraga,H.A"	"Characterization of multiple bends in proteinsJ Biopolymers 19, 1183-1210 (1980)"	"Biopolymers 19, 1183-1210 (1980)* Recalculated by Kidera using a different set of proteins"
ISOY800104	"Normalized relative frequency of bend R (Isogai et al., 1980)"	7378550	"Isogai, Y., Nemethy, G., Rackovsky, S., Leach, S.J. and Scheraga,H.A"	"Characterization of multiple bends in proteinsJ Biopolymers 19, 1183-1210 (1980)"	"Biopolymers 19, 1183-1210 (1980)* Recalculated by Kidera using a different set of proteins"
ISOY800105	"Normalized relative frequency of bend S (Isogai et al., 1980)"	7378550	"Isogai, Y., Nemethy, G., Rackovsky, S., Leach, S.J. and Scheraga,H.A"	"Characterization of multiple bends in proteinsJ Biopolymers 19, 1183-1210 (1980)"	"Biopolymers 19, 1183-1210 (1980)* Recalculated by Kidera using a different set of proteins"
ISOY800106	"Normalized relative frequency of helix end (Isogai et al., 1980)"	7378550	"Isogai, Y., Nemethy, G., Rackovsky, S., Leach, S.J. and Scheraga,H.A"	"Characterization of multiple bends in proteinsJ Biopolymers 19, 1183-1210 (1980)"	"Biopolymers 19, 1183-1210 (1980)* Recalculated by Kidera using a different set of proteins"
ISOY800107	"Normalized relative frequency of double bend (Isogai et al., 1980)"	7378550	"Isogai, Y., Nemethy, G., Rackovsky, S., Leach, S.J. and Scheraga,H.A"	"Characterization of multiple bends in proteinsJ Biopolymers 19, 1183-1210 (1980)"	"Biopolymers 19, 1183-1210 (1980)* Recalculated by Kidera using a different set of proteins"
ISOY800108	"Normalized relative frequency of coil (Isogai et al., 1980)"	7378550	"Isogai, Y., Nemethy, G., Rackovsky, S., Leach, S.J. and Scheraga,H.A"	"Characterization of multiple bends in proteinsJ Biopolymers 19, 1183-1210 (1980)"	"Biopolymers 19, 1183-1210 (1980)* Recalculated by Kidera using a different set of proteins"
JANJ780101	"Average accessible surface area (Janin et al., 1978)"	731698	"Janin, J., Wodak, S., Levitt, M. and Maigret, B."	"Conformation of amino acid side-chains in proteinsJ J. Mol. Biol. 125, 357-386 (1978)"	"J. Mol. Biol. 125, 357-386 (1978)"
JANJ780102	"Percentage of buried residues (Janin et al., 1978)"	731698	"Janin, J., Wodak, S., Levitt, M. and Maigret, B."	"Conformation of amino acid side-chains in proteinsJ J. Mol. Biol. 125, 357-386 (1978)"	"J. Mol. Biol. 125, 357-386 (1978)"
JANJ780103	"Percentage of exposed residues (Janin et al., 1978)"	731698	"Janin, J., Wodak, S., Levitt, M. and Maigret, B."	"Conformation of amino acid side-chains in proteinsJ J. Mol. Biol. 125, 357-386 (1978)"	"J. Mol. Biol. 125, 357-386 (1978)"
JANJ790101	"Ratio of buried and accessible molar fractions (Janin, 1979)"	763335	"Janin, J."	"Surface and inside volumes in globular proteinsJ Nature 277, 491-492 (1979)"	"Nature 277, 491-492 (1979)"
JANJ790102	"Transfer free energy (Janin, 1979)"	763335	"Janin, J."	"Surface and inside volumes in globular proteinsJ Nature 277, 491-492 (1979)"	"Nature 277, 491-492 (1979)"
JOND750101	"Hydrophobicity (Jones, 1975)"	1127956	"Jones, D.D."	"Amino acid properties and side-chain orientation in proteins: A cross correlation approachJ J. Theor. Biol. 50, 167-183 (1975)"	"J. Theor. Biol. 50, 167-183 (1975)"
JOND750102	"pK (-COOH) (Jones, 1975)"	1127956	"Jones, D.D."	"Amino acid properties and side-chain orientation in proteins: A cross correlation approachJ J. Theor. Biol. 50, 167-183 (1975)"	"J. Theor. Biol. 50, 167-183 (1975)* Original reference of this data:* McMeekin, T.L., Groves, M.L. and Hipp, N.J.* In ""Amino Acids and Serum Proteins"" (Stekol, J.A., ed.), American* Chemical Society, Washington, D.C., p. 54 (1964)"
JOND920101	"Relative frequency of occurrence (Jones et al., 1992)"	1633570	"Jones, D.T., Taylor, W.R. and Thornton, J.M."	"The rapid generation of mutation data matrices from protein sequencesJ CABIOS 8, 275-282 (1992)"	"CABIOS 8, 275-282 (1992)"
JOND920102	"Relative mutability (Jones et al., 1992)"	1633570	"Jones, D.T., Taylor, W.R. and Thornton, J.M."	"The rapid generation of mutation data matrices from protein sequencesJ CABIOS 8, 275-282 (1992)"	"CABIOS 8, 275-282 (1992)"
JUKT750101	"Amino acid distribution (Jukes et al., 1975)"	237322	"Jukes, T.H., Holmquist, R. and Moise, H."	"Amino acid composition of proteins: Selection against the genetic codeJ Science 189, 50-51 (1975)"	"Science 189, 50-51 (1975)"
JUNJ780101	"Sequence frequency (Jungck, 1978)"	691072	"Jungck, J.R."	"The genetic code as a periodic tableJ J. Mol. Evol. 11, 211-224 (1978)"	"J. Mol. Evol. 11, 211-224 (1978)"
KANM800101	"Average relative probability of helix (Kanehisa-Tsong, 1980)"	7426680	"Kanehisa, M.I. and Tsong, T.Y."	"Local hydrophobicity stabilizes secondary structures in proteinsJ Biopolymers 19, 1617-1628 (1980)"	"Biopolymers 19, 1617-1628 (1980)"
KANM800102	"Average relative probability of beta-sheet (Kanehisa-Tsong, 1980)"	7426680	"Kanehisa, M.I. and Tsong, T.Y."	"Local hydrophobicity stabilizes secondary structures in proteinsJ Biopolymers 19, 1617-1628 (1980)"	"Biopolymers 19, 1617-1628 (1980)"
KANM800103	"Average relative probability of inner helix (Kanehisa-Tsong, 1980)"	7426680	"Kanehisa, M.I. and Tsong, T.Y."	"Local hydrophobicity stabilizes secondary structures in proteinsJ Biopolymers 19, 1617-1628 (1980)"	"Biopolymers 19, 1617-1628 (1980)"
KANM800104	"Average relative probability of inner beta-sheet (Kanehisa-Tsong, 1980)"	7426680	"Kanehisa, M.I. and Tsong, T.Y."	"Local hydrophobicity stabilizes secondary structures in proteinsJ Biopolymers 19, 1617-1628 (1980)"	"Biopolymers 19, 1617-1628 (1980)"
KARP850101	"Flexibility parameter for no rigid neighbors (Karplus-Schulz, 1985)"	0	"Karplus, P.A. and Schulz, G.E."	"Prediction of chain flexibility in proteinsJ Naturwiss. 72, 212-213 (1985)"	"Naturwiss. 72, 212-213 (1985)"
KARP850102	"Flexibility parameter for one rigid neighbor (Karplus-Schulz, 1985)"	0	"Karplus, P.A. and Schulz, G.E."	"Prediction of chain flexibility in proteinsJ Naturwiss. 72, 212-213 (1985)"	"Naturwiss. 72, 212-213 (1985)"
KARP850103	"Flexibility parameter for two rigid neighbors (Karplus-Schulz, 1985)"	0	"Karplus, P.A. and Schulz, G.E."	"Prediction of chain flexibility in proteinsJ Naturwiss. 72, 212-213 (1985)"	"Naturwiss. 72, 212-213 (1985)"
KHAG800101	"The Kerr-constant increments (Khanarian-Moore, 1980)"	0	"Khanarian, G. and Moore, W.J."	"The Kerr effect of amino acids in waterJ Aust. J. Chem. 33, 1727-1741 (1980)"	"Aust. J. Chem. 33, 1727-1741 (1980)* (Cys Lys Tyr !)"
KLEP840101	"Net charge (Klein et al., 1984)"	6547351	"Klein, P., Kanehisa, M. and DeLisi, C."	"Prediction of protein function from sequence properties: Discriminant analysis of a data baseJ Biochim. Biophys. Acta 787, 221-226 (1984)"	"Biochim. Biophys. Acta 787, 221-226 (1984)"
KRIW710101	"Side chain interaction parameter (Krigbaum-Rubin, 1971)"	5553983	"Krigbaum, W.R. and Rubin, B.H."	"Local interactions as structure determinant for globular proteinsJ Biochim. Biophys. Acta 229, 368-383 (1971)"	"Biochim. Biophys. Acta 229, 368-383 (1971)"
KRIW790101	"Side chain interaction parameter (Krigbaum-Komoriya, 1979)"	760806	"Krigbaum, W.R. and Komoriya, A."	"Local interactions as a structure determinant for protein molecules: IIJ Biochim. Biophys. Acta 576, 204-228 (1979)"	"Biochim. Biophys. Acta 576, 204-228 (1979)"
KRIW790102	"Fraction of site occupied by water (Krigbaum-Komoriya, 1979)"	760806	"Krigbaum, W.R. and Komoriya, A."	"Local interactions as a structure determinant for protein molecules: IIJ Biochim. Biophys. Acta 576, 204-228 (1979)"	"Biochim. Biophys. Acta 576, 204-228 (1979)"
KRIW790103	"Side chain volume (Krigbaum-Komoriya, 1979)"	760806	"Krigbaum, W.R. and Komoriya, A."	"Local interactions as a structure determinant for protein molecules: IIJ Biochim. Biophys. Acta 576, 204-228 (1979)"	"Biochim. Biophys. Acta 576, 204-228 (1979)* (Gly Pro 7.8)"
KYTJ820101	"Hydropathy index (Kyte-Doolittle, 1982)"	7108955	"Kyte, J. and Doolittle, R.F."	"A simple method for displaying the hydropathic character of a proteinJ J. Mol. Biol. 157, 105-132 (1982)"	"J. Mol. Biol. 157, 105-132 (1982)"
LAWE840101	"Transfer free energy, CHP/water (Lawson et al., 1984)"	6699000	"Lawson, E.Q., Sadler, A.J., Harmatz, D., Brandau, D.T., Micanovic, R."	"A simple experimental model for hydrophobic interactions in proteinsJ J. Biol. Chem. 259, 2910-2912 (1984)"	"J. Biol. Chem. 259, 2910-2912 (1984)"
LEVM760101	"Hydrophobic parameter (Levitt, 1976)"	957439	"Levitt, M."	"A simplified representation of protein conformations for rapid simulation of protein folfingJ J. Mol. Biol. 104, 59-107 (1976)"	"J. Mol. Biol. 104, 59-107 (1976)"
LEVM760102	"Distance between C-alpha and centroid of side chain (Levitt, 1976)"	957439	"Levitt, M."	"A simplified representation of protein conformations for rapid simulation of protein folfingJ J. Mol. Biol. 104, 59-107 (1976)"	"J. Mol. Biol. 104, 59-107 (1976)"
LEVM760103	"Side chain angle theta(AAR) (Levitt, 1976)"	957439	"Levitt, M."	"A simplified representation of protein conformations for rapid simulation of protein folfingJ J. Mol. Biol. 104, 59-107 (1976)"	"J. Mol. Biol. 104, 59-107 (1976)* (Gly missing)"
LEVM760104	"Side chain torsion angle phi(AAAR) (Levitt, 1976)"	957439	"Levitt, M."	"A simplified representation of protein conformations for rapid simulation of protein folfingJ J. Mol. Biol. 104, 59-107 (1976)"	"J. Mol. Biol. 104, 59-107 (1976)"
LEVM760105	"Radius of gyration of side chain (Levitt, 1976)"	957439	"Levitt, M."	"A simplified representation of protein conformations for rapid simulation of protein folfingJ J. Mol. Biol. 104, 59-107 (1976)"	"J. Mol. Biol. 104, 59-107 (1976)* (Gly 0.089)"
LEVM760106	"van der Waals parameter R0 (Levitt, 1976)"	957439	"Levitt, M."	"A simplified representation of protein conformations for rapid simulation of protein folfingJ J. Mol. Biol. 104, 59-107 (1976)"	"J. Mol. Biol. 104, 59-107 (1976)"
LEVM760107	"van der Waals parameter epsilon (Levitt, 1976)"	957439	"Levitt, M."	"A simplified representation of protein conformations for rapid simulation of protein folfingJ J. Mol. Biol. 104, 59-107 (1976)"	"J. Mol. Biol. 104, 59-107 (1976)"
LEVM780101	"Normalized frequency of alpha-helix, with weights (Levitt, 1978)"	708713	"Levitt, M."	"Conformational preferences of amino acids in globular proteinsJ Biochemistry 17, 4277-4285 (1978)"	"Biochemistry 17, 4277-4285 (1978)"
LEVM780102	"Normalized frequency of beta-sheet, with weights (Levitt, 1978)"	708713	"Levitt, M."	"Conformational preferences of amino acids in globular proteinsJ Biochemistry 17, 4277-4285 (1978)"	"Biochemistry 17, 4277-4285 (1978)"
LEVM780103	"Normalized frequency of reverse turn, with weights (Levitt, 1978)"	708713	"Levitt, M."	"Conformational preferences of amino acids in globular proteinsJ Biochemistry 17, 4277-4285 (1978)"	"Biochemistry 17, 4277-4285 (1978)"
LEVM780104	"Normalized frequency of alpha-helix, unweighted (Levitt, 1978)"	708713	"Levitt, M."	"Conformational preferences of amino acids in globular proteinsJ Biochemistry 17, 4277-4285 (1978)"	"Biochemistry 17, 4277-4285 (1978)"
LEVM780105	"Normalized frequency of beta-sheet, unweighted (Levitt, 1978)"	708713	"Levitt, M."	"Conformational preferences of amino acids in globular proteinsJ Biochemistry 17, 4277-4285 (1978)"	"Biochemistry 17, 4277-4285 (1978)"
LEVM780106	"Normalized frequency of reverse turn, unweighted (Levitt, 1978)"	708713	"Levitt, M."	"Conformational preferences of amino acids in globular proteinsJ Biochemistry 17, 4277-4285 (1978)"	"Biochemistry 17, 4277-4285 (1978)"
LEWP710101	"Frequency of occurrence in beta-bends (Lewis et al., 1971)"	5289387	"Lewis, P. N., Momany, F.A. and Scheraga, H.A."	"Folding of polypeptide chains in proteins: A proposed mechanism for foldingJ Proc. Natl. Acad. Sci. USA 68, 2293-2297 (1971)"	"Proc. Natl. Acad. Sci. USA 68, 2293-2297 (1971)"
LIFS790101	"Conformational preference for all beta-strands (Lifson-Sander, 1979)"	503185	"Lifson, S. and Sander, C."	"Antiparallel and parallel beta-strands differ in amino acid residue preferenceJ Nature 282, 109-111 (1979)"	"Nature 282, 109-111 (1979)"
LIFS790102	"Conformational preference for parallel beta-strands (Lifson-Sander, 1979)"	503185	"Lifson, S. and Sander, C."	"Antiparallel and parallel beta-strands differ in amino acid residue preferenceJ Nature 282, 109-111 (1979)"	"Nature 282, 109-111 (1979)"
LIFS790103	"Conformational preference for antiparallel beta-strands (Lifson-Sander, 1979)"	503185	"Lifson, S. and Sander, C."	"Antiparallel and parallel beta-strands differ in amino acid residue preferenceJ Nature 282, 109-111 (1979)"	"Nature 282, 109-111 (1979)"
MANP780101	"Average surrounding hydrophobicity (Manavalan-Ponnuswamy, 1978)"	703834	"Manavalan, P. and Ponnuswamy, P.K."	"Hydrophobic character of amino acid residues in globular proteinsJ Nature 275, 673-674 (1978)"	"Nature 275, 673-674 (1978)"
MAXF760101	"Normalized frequency of alpha-helix (Maxfield-Scheraga, 1976)"	990270	"Maxfield, F.R. and Scheraga, H.A."	"Status of empirical methods for the prediction of protein backbone topographyJ Biochemistry 15, 5138-5153 (1976)"	"Biochemistry 15, 5138-5153 (1976)* Recalculated by Kidera using a different set of proteins* Reported values normalized by the total number"
MAXF760102	"Normalized frequency of extended structure (Maxfield-Scheraga, 1976)"	990270	"Maxfield, F.R. and Scheraga, H.A."	"Status of empirical methods for the prediction of protein backbone topographyJ Biochemistry 15, 5138-5153 (1976)"	"Biochemistry 15, 5138-5153 (1976)* Recalculated by Kidera using a different set of proteins* Reported values normalized by the total number"
MAXF760103	"Normalized frequency of zeta R (Maxfield-Scheraga, 1976)"	990270	"Maxfield, F.R. and Scheraga, H.A."	"Status of empirical methods for the prediction of protein backbone topographyJ Biochemistry 15, 5138-5153 (1976)"	"Biochemistry 15, 5138-5153 (1976)* Recalculated by Kidera using a different set of proteins* Reported values normalized by the total number"
MAXF760104	"Normalized frequency of left-handed alpha-helix (Maxfield-Scheraga, 1976)"	990270	"Maxfield, F.R. and Scheraga, H.A."	"Status of empirical methods for the prediction of protein backbone topographyJ Biochemistry 15, 5138-5153 (1976)"	"Biochemistry 15, 5138-5153 (1976)* Recalculated by Kidera using a different set of proteins* Reported values normalized by the total number"
MAXF760105	"Normalized frequency of zeta L (Maxfield-Scheraga, 1976)"	990270	"Maxfield, F.R. and Scheraga, H.A."	"Status of empirical methods for the prediction of protein backbone topographyJ Biochemistry 15, 5138-5153 (1976)"	"Biochemistry 15, 5138-5153 (1976)* Recalculated by Kidera using a different set of proteins* Reported values normalized by the total number"
MAXF760106	"Normalized frequency of alpha region (Maxfield-Scheraga, 1976)"	990270	"Maxfield, F.R. and Scheraga, H.A."	"Status of empirical methods for the prediction of protein backbone topographyJ Biochemistry 15, 5138-5153 (1976)"	"Biochemistry 15, 5138-5153 (1976)* Recalculated by Kidera using a different set of proteins* Reported values normalized by the total number"
MCMT640101	"Refractivity (McMeekin et al., 1964), Cited by Jones (1975)"	0	"McMeekin, T.L., Groves, M.L. and Hipp, N.J."	"J In ""Amino Acids and Serum Proteins"" (Stekol, J.A., ed.), American Chemical"	"In ""Amino Acids and Serum Proteins"" (Stekol, J.A., ed.), American Chemical Society, Washington, D.C., p. 54 (1964)"
MEEJ800101	"Retention coefficient in HPLC, pH7.4 (Meek, 1980)"	6929513	"Meek, J.L."	"Prediction of peptide retention times in high-pressure liquid chromatography on the basis of amino acid compositionJ Proc. Natl. Acad. Sci. USA 77, 1632-1636 (1980)"	"Proc. Natl. Acad. Sci. USA 77, 1632-1636 (1980)"
MEEJ800102	"Retention coefficient in HPLC, pH2.1 (Meek, 1980)"	6929513	"Meek, J.L."	"Prediction of peptide retention times in high-pressure liquid chromatography on the basis of amino acid compositionJ Proc. Natl. Acad. Sci. USA 77, 1632-1636 (1980)"	"Proc. Natl. Acad. Sci. USA 77, 1632-1636 (1980)"
MEEJ810101	"Retention coefficient in NaClO4 (Meek-Rossetti, 1981)"	0	"Meek, J.L. and Rossetti, Z.L."	"Factors affecting retention and resolution of peptides in high-performance liquid chromatographyJ J. Chromatogr. 211, 15-28 (1981)"	"J. Chromatogr. 211, 15-28 (1981)"
MEEJ810102	"Retention coefficient in NaH2PO4 (Meek-Rossetti, 1981)"	0	"Meek, J.L. and Rossetti, Z.L."	"Factors affecting retention and resolution of peptides in high-performance liquid chromatographyJ J. Chromatogr. 211, 15-28 (1981)"	"J. Chromatogr. 211, 15-28 (1981)"
MEIH800101	"Average reduced distance for C-alpha (Meirovitch et al., 1980)"	0	"Meirovitch, H., Rackovsky, S. and Scheraga, H.A."	"Empirical studies of hydrophobicity. 1. Effect of protein size on the hydrophobic behavior of amino acidsJ Macromolecules 13, 1398-1405 (1980)"	"Macromolecules 13, 1398-1405 (1980)* Database taken from group C"
MEIH800102	"Average reduced distance for side chain (Meirovitch et al., 1980)"	0	"Meirovitch, H., Rackovsky, S. and Scheraga, H.A."	"Empirical studies of hydrophobicity. 1. Effect of protein size on the hydrophobic behavior of amino acidsJ Macromolecules 13, 1398-1405 (1980)"	"Macromolecules 13, 1398-1405 (1980)* Database taken from group C* (Gly 0.067)"
MEIH800103	"Average side chain orientation angle (Meirovitch et al., 1980)"	0	"Meirovitch, H., Rackovsky, S. and Scheraga, H.A."	"Empirical studies of hydrophobicity. 1. Effect of protein size on the hydrophobic behavior of amino acidsJ Macromolecules 13, 1398-1405 (1980)"	"Macromolecules 13, 1398-1405 (1980)* Database taken from group C* (Gly 7.4)"
MIYS850101	"Effective partition energy (Miyazawa-Jernigan, 1985)"	0	"Miyazawa, S. and Jernigan, R.L."	"Estimation of effective interresidue contact energies from protein crystal structures: Quasi-chemical approximationJ Macromolecules 18, 534-552 (1985)"	"Macromolecules 18, 534-552 (1985)"
NAGK730101	"Normalized frequency of alpha-helix (Nagano, 1973)"	4728695	"Nagano, K."	"Local analysis of the mechanism of protein folding. I. Prediction of helices, loops, and beta-structures from primary structureJ J. Mol. Biol. 75, 401-420 (1973)"	"J. Mol. Biol. 75, 401-420 (1973)"
NAGK730102	"Normalized frequency of bata-structure (Nagano, 1973)"	4728695	"Nagano, K."	"Local analysis of the mechanism of protein folding. I. Prediction of helices, loops, and beta-structures from primary structureJ J. Mol. Biol. 75, 401-420 (1973)"	"J. Mol. Biol. 75, 401-420 (1973)"
NAGK730103	"Normalized frequency of coil (Nagano, 1973)"	4728695	"Nagano, K."	"Local analysis of the mechanism of protein folding. I. Prediction of helices, loops, and beta-structures from primary structureJ J. Mol. Biol. 75, 401-420 (1973)"	"J. Mol. Biol. 75, 401-420 (1973)"
NAKH900101	"AA composition of total proteins (Nakashima et al., 1990)"	2235995	"Nakashima, H., Nishikawa, K. and Ooi, T."	"Distinct character in hydrophobicity of amino acid composition of mitochondrial proteinsJ PROTEINS 8, 173-178 (1990)"	"PROTEINS 8, 173-178 (1990)"
NAKH900102	"SD of AA composition of total proteins (Nakashima et al., 1990)"	2235995	"Nakashima, H., Nishikawa, K. and Ooi, T."	"Distinct character in hydrophobicity of amino acid composition of mitochondrial proteinsJ PROTEINS 8, 173-178 (1990)"	"PROTEINS 8, 173-178 (1990)"
NAKH900103	"AA composition of mt-proteins (Nakashima et al., 1990)"	2235995	"Nakashima, H., Nishikawa, K. and Ooi, T."	"Distinct character in hydrophobicity of amino acid composition of mitochondrial proteinsJ PROTEINS 8, 173-178 (1990)"	"PROTEINS 8, 173-178 (1990)"
NAKH900104	"Normalized composition of mt-proteins (Nakashima et al., 1990)"	2235995	"Nakashima, H., Nishikawa, K. and Ooi, T."	"Distinct character in hydrophobicity of amino acid composition of mitochondrial proteinsJ PROTEINS 8, 173-178 (1990)"	"PROTEINS 8, 173-178 (1990)"
NAKH900105	"AA composition of mt-proteins from animal (Nakashima et al., 1990)"	2235995	"Nakashima, H., Nishikawa, K. and Ooi, T."	"Distinct character in hydrophobicity of amino acid composition of mitochondrial proteinsJ PROTEINS 8, 173-178 (1990)"	"PROTEINS 8, 173-178 (1990)"
NAKH900106	"Normalized composition from animal (Nakashima et al., 1990)"	2235995	"Nakashima, H., Nishikawa, K. and Ooi, T."	"Distinct character in hydrophobicity of amino acid composition of mitochondrial proteinsJ PROTEINS 8, 173-178 (1990)"	"PROTEINS 8, 173-178 (1990)"
NAKH900107	"AA composition of mt-proteins from fungi and plant (Nakashima et al., 1990)"	2235995	"Nakashima, H., Nishikawa, K. and Ooi, T."	"Distinct character in hydrophobicity of amino acid composition of mitochondrial proteinsJ PROTEINS 8, 173-178 (1990)"	"PROTEINS 8, 173-178 (1990)"
NAKH900108	"Normalized composition from fungi and plant (Nakashima et al., 1990)"	2235995	"Nakashima, H., Nishikawa, K. and Ooi, T."	"Distinct character in hydrophobicity of amino acid composition of mitochondrial proteinsJ PROTEINS 8, 173-178 (1990)"	"PROTEINS 8, 173-178 (1990)"
NAKH900109	"AA composition of membrane proteins (Nakashima et al., 1990)"	2235995	"Nakashima, H., Nishikawa, K. and Ooi, T."	"Distinct character in hydrophobicity of amino acid composition of mitochondrial proteinsJ PROTEINS 8, 173-178 (1990)"	"PROTEINS 8, 173-178 (1990)"
NAKH900110	"Normalized composition of membrane proteins (Nakashima et al., 1990)"	2235995	"Nakashima, H., Nishikawa, K. and Ooi, T."	"Distinct character in hydrophobicity of amino acid composition of mitochondrial proteinsJ PROTEINS 8, 173-178 (1990)"	"PROTEINS 8, 173-178 (1990)"
NAKH900111	"Transmembrane regions of non-mt-proteins (Nakashima et al., 1990)"	2235995	"Nakashima, H., Nishikawa, K. and Ooi, T."	"Distinct character in hydrophobicity of amino acid composition of mitochondrial proteinsJ PROTEINS 8, 173-178 (1990)"	"PROTEINS 8, 173-178 (1990)"
NAKH900112	"Transmembrane regions of mt-proteins (Nakashima et al., 1990)"	2235995	"Nakashima, H., Nishikawa, K. and Ooi, T."	"Distinct character in hydrophobicity of amino acid composition of mitochondrial proteinsJ PROTEINS 8, 173-178 (1990)"	"PROTEINS 8, 173-178 (1990)"
NAKH900113	"Ratio of average and computed composition (Nakashima et al., 1990)"	2235995	"Nakashima, H., Nishikawa, K. and Ooi, T."	"Distinct character in hydrophobicity of amino acid composition of mitochondrial proteinsJ PROTEINS 8, 173-178 (1990)"	"PROTEINS 8, 173-178 (1990)"
NAKH920101	"AA composition of CYT of single-spanning proteins (Nakashima-Nishikawa, 1992)"	1607012	"Nakashima, H. and Nishikawa, K."	"The amino acid composition is different between the cytoplasmic and extracellular sides in membrane proteinsJ FEBS Lett. 303, 141-146 (1992)"	"FEBS Lett. 303, 141-146 (1992)"
NAKH920102	"AA composition of CYT2 of single-spanning proteins (Nakashima-Nishikawa, 1992)"	1607012	"Nakashima, H. and Nishikawa, K."	"The amino acid composition is different between the cytoplasmic and extracellular sides in membrane proteinsJ FEBS Lett. 303, 141-146 (1992)"	"FEBS Lett. 303, 141-146 (1992)"
NAKH920103	"AA composition of EXT of single-spanning proteins (Nakashima-Nishikawa, 1992)"	1607012	"Nakashima, H. and Nishikawa, K."	"The amino acid composition is different between the cytoplasmic and extracellular sides in membrane proteinsJ FEBS Lett. 303, 141-146 (1992)"	"FEBS Lett. 303, 141-146 (1992)"
NAKH920104	"AA composition of EXT2 of single-spanning proteins (Nakashima-Nishikawa, 1992)"	1607012	"Nakashima, H. and Nishikawa, K."	"The amino acid composition is different between the cytoplasmic and extracellular sides in membrane proteinsJ FEBS Lett. 303, 141-146 (1992)"	"FEBS Lett. 303, 141-146 (1992)"
NAKH920105	"AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992)"	1607012	"Nakashima, H. and Nishikawa, K."	"The amino acid composition is different between the cytoplasmic and extracellular sides in membrane proteinsJ FEBS Lett. 303, 141-146 (1992)"	"FEBS Lett. 303, 141-146 (1992)"
NAKH920106	"AA composition of CYT of multi-spanning proteins (Nakashima-Nishikawa, 1992)"	1607012	"Nakashima, H. and Nishikawa, K."	"The amino acid composition is different between the cytoplasmic and extracellular sides in membrane proteinsJ FEBS Lett. 303, 141-146 (1992)"	"FEBS Lett. 303, 141-146 (1992)"
NAKH920107	"AA composition of EXT of multi-spanning proteins (Nakashima-Nishikawa, 1992)"	1607012	"Nakashima, H. and Nishikawa, K."	"The amino acid composition is different between the cytoplasmic and extracellular sides in membrane proteinsJ FEBS Lett. 303, 141-146 (1992)"	"FEBS Lett. 303, 141-146 (1992)"
NAKH920108	"AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992)"	1607012	"Nakashima, H. and Nishikawa, K."	"The amino acid composition is different between the cytoplasmic and extracellular sides in membrane proteinsJ FEBS Lett. 303, 141-146 (1992)"	"FEBS Lett. 303, 141-146 (1992)"
NISK800101	"8 A contact number (Nishikawa-Ooi, 1980)"	7440060	"Nishikawa, K. and Ooi, T."	"Prediction of the surface-interior diagram of globular proteins by an empirical methodJ Int. J. Peptide Protein Res. 16, 19-32 (1980)"	"Int. J. Peptide Protein Res. 16, 19-32 (1980)"
NISK860101	"14 A contact number (Nishikawa-Ooi, 1986)"	3818558	"Nishikawa, K. and Ooi, T."	"Radial locations of amino acid residues in a globular protein: Correlation with the sequenceJ J. Biochem. 100, 1043-1047 (1986)"	"J. Biochem. 100, 1043-1047 (1986)* Values supplied by the author"
NOZY710101	"Transfer energy, organic solvent/water (Nozaki-Tanford, 1971)"	5555568	"Nozaki, Y. and Tanford, C."	"The solubility of amino acids and two glycine peptides in aqueous ethanol and dioxane solutionsJ J. Biol. Chem. 246, 2211-2217 (1971)"	"J. Biol. Chem. 246, 2211-2217 (1971)* Missing values filled with zeros"
OOBM770101	"Average non-bonded energy per atom (Oobatake-Ooi, 1977)"	904331	"Oobatake, M. and Ooi, T."	"An analysis of non-bonded energy of proteinsJ J. Theor. Biol. 67, 567-584 (1977)"	"J. Theor. Biol. 67, 567-584 (1977)* Last two calcualted by Kidera; multiplied by the number of heavy atoms"
OOBM770102	"Short and medium range non-bonded energy per atom (Oobatake-Ooi, 1977)"	904331	"Oobatake, M. and Ooi, T."	"An analysis of non-bonded energy of proteinsJ J. Theor. Biol. 67, 567-584 (1977)"	"J. Theor. Biol. 67, 567-584 (1977)* Last two calcualted by Kidera; multiplied by the number of heavy atoms"
OOBM770103	"Long range non-bonded energy per atom (Oobatake-Ooi, 1977)"	904331	"Oobatake, M. and Ooi, T."	"An analysis of non-bonded energy of proteinsJ J. Theor. Biol. 67, 567-584 (1977)"	"J. Theor. Biol. 67, 567-584 (1977)* Last two calcualted by Kidera; multiplied by the number of heavy atoms"
OOBM770104	"Average non-bonded energy per residue (Oobatake-Ooi, 1977)"	904331	"Oobatake, M. and Ooi, T."	"An analysis of non-bonded energy of proteinsJ J. Theor. Biol. 67, 567-584 (1977)"	"J. Theor. Biol. 67, 567-584 (1977)* Last two calcualted by Kidera; multiplied by the number of heavy atoms"
OOBM770105	"Short and medium range non-bonded energy per residue (Oobatake-Ooi, 1977)"	904331	"Oobatake, M. and Ooi, T."	"An analysis of non-bonded energy of proteinsJ J. Theor. Biol. 67, 567-584 (1977)"	"J. Theor. Biol. 67, 567-584 (1977)* Last two calcualted by Kidera; multiplied by the number of heavy atoms"
OOBM850101	"Optimized beta-structure-coil equilibrium constant (Oobatake et al., 1985)"	0	"Oobatake, M., Kubota, Y. and Ooi, T."	"Optimization of amino acid parameters for correspondence of sequence to tertiary structures of proteuinsJ Bull. Inst. Chem. Res., Kyoto Univ. 63, 82-94 (1985)"	"Bull. Inst. Chem. Res., Kyoto Univ. 63, 82-94 (1985)"
OOBM850102	"Optimized propensity to form reverse turn (Oobatake et al., 1985)"	0	"Oobatake, M., Kubota, Y. and Ooi, T."	"Optimization of amino acid parameters for correspondence of sequence to tertiary structures of proteuinsJ Bull. Inst. Chem. Res., Kyoto Univ. 63, 82-94 (1985)"	"Bull. Inst. Chem. Res., Kyoto Univ. 63, 82-94 (1985)"
OOBM850103	"Optimized transfer energy parameter (Oobatake et al., 1985)"	0	"Oobatake, M., Kubota, Y. and Ooi, T."	"Optimization of amino acid parameters for correspondence of sequence to tertiary structures of proteuinsJ Bull. Inst. Chem. Res., Kyoto Univ. 63, 82-94 (1985)"	"Bull. Inst. Chem. Res., Kyoto Univ. 63, 82-94 (1985)"
OOBM850104	"Optimized average non-bonded energy per atom (Oobatake et al., 1985)"	0	"Oobatake, M., Kubota, Y. and Ooi, T."	"Optimization of amino acid parameters for correspondence of sequence to tertiary structures of proteuinsJ Bull. Inst. Chem. Res., Kyoto Univ. 63, 82-94 (1985)"	"Bull. Inst. Chem. Res., Kyoto Univ. 63, 82-94 (1985)"
OOBM850105	"Optimized side chain interaction parameter (Oobatake et al., 1985)"	0	"Oobatake, M., Kubota, Y. and Ooi, T."	"Optimization of amino acid parameters for correspondence of sequence to tertiary structures of proteuinsJ Bull. Inst. Chem. Res., Kyoto Univ. 63, 82-94 (1985)"	"Bull. Inst. Chem. Res., Kyoto Univ. 63, 82-94 (1985)"
PALJ810101	"Normalized frequency of alpha-helix from LG (Palau et al., 1981)"	7118409	"Palau, J., Argos, P. and Puigdomenech, P."	"Protein secondary structureJ Int. J. Peptide Protein Res. 19, 394-401 (1981)"	"Int. J. Peptide Protein Res. 19, 394-401 (1981)* LG :a set of protein samples formed by 44 proteins.* CF :a set of protein samples formed by 33 proteins."
PALJ810102	"Normalized frequency of alpha-helix from CF (Palau et al., 1981)"	7118409	"Palau, J., Argos, P. and Puigdomenech, P."	"Protein secondary structureJ Int. J. Peptide Protein Res. 19, 394-401 (1981)"	"Int. J. Peptide Protein Res. 19, 394-401 (1981)* LG :a set of protein samples formed by 44 proteins.* CF :a set of protein samples formed by 33 proteins."
PALJ810103	"Normalized frequency of beta-sheet from LG (Palau et al., 1981)"	7118409	"Palau, J., Argos, P. and Puigdomenech, P."	"Protein secondary structureJ Int. J. Peptide Protein Res. 19, 394-401 (1981)"	"Int. J. Peptide Protein Res. 19, 394-401 (1981)* LG :a set of protein samples formed by 44 proteins.* CF :a set of protein samples formed by 33 proteins."
PALJ810104	"Normalized frequency of beta-sheet from CF (Palau et al., 1981)"	7118409	"Palau, J., Argos, P. and Puigdomenech, P."	"Protein secondary structureJ Int. J. Peptide Protein Res. 19, 394-401 (1981)"	"Int. J. Peptide Protein Res. 19, 394-401 (1981)* LG :a set of protein samples formed by 44 proteins.* CF :a set of protein samples formed by 33 proteins."
PALJ810105	"Normalized frequency of turn from LG (Palau et al., 1981)"	7118409	"Palau, J., Argos, P. and Puigdomenech, P."	"Protein secondary structureJ Int. J. Peptide Protein Res. 19, 394-401 (1981)"	"Int. J. Peptide Protein Res. 19, 394-401 (1981)* LG :a set of protein samples formed by 44 proteins.* CF :a set of protein samples formed by 33 proteins."
PALJ810106	"Normalized frequency of turn from CF (Palau et al., 1981)"	7118409	"Palau, J., Argos, P. and Puigdomenech, P."	"Protein secondary structureJ Int. J. Peptide Protein Res. 19, 394-401 (1981)"	"Int. J. Peptide Protein Res. 19, 394-401 (1981)* LG :a set of protein samples formed by 44 proteins.* CF :a set of protein samples formed by 33 proteins."
PALJ810107	"Normalized frequency of alpha-helix in all-alpha class (Palau et al., 1981)"	7118409	"Palau, J., Argos, P. and Puigdomenech, P."	"Protein secondary structureJ Int. J. Peptide Protein Res. 19, 394-401 (1981)"	"Int. J. Peptide Protein Res. 19, 394-401 (1981)* LG :a set of protein samples formed by 44 proteins.* CF :a set of protein samples formed by 33 proteins."
PALJ810108	"Normalized frequency of alpha-helix in alpha+beta class (Palau et al., 1981)"	7118409	"Palau, J., Argos, P. and Puigdomenech, P."	"Protein secondary structureJ Int. J. Peptide Protein Res. 19, 394-401 (1981)"	"Int. J. Peptide Protein Res. 19, 394-401 (1981)* LG :a set of protein samples formed by 44 proteins.* CF :a set of protein samples formed by 33 proteins."
PALJ810109	"Normalized frequency of alpha-helix in alpha/beta class (Palau et al., 1981)"	7118409	"Palau, J., Argos, P. and Puigdomenech, P."	"Protein secondary structureJ Int. J. Peptide Protein Res. 19, 394-401 (1981)"	"Int. J. Peptide Protein Res. 19, 394-401 (1981)* LG :a set of protein samples formed by 44 proteins.* CF :a set of protein samples formed by 33 proteins."
PALJ810110	"Normalized frequency of beta-sheet in all-beta class (Palau et al., 1981)"	7118409	"Palau, J., Argos, P. and Puigdomenech, P."	"Protein secondary structureJ Int. J. Peptide Protein Res. 19, 394-401 (1981)"	"Int. J. Peptide Protein Res. 19, 394-401 (1981)* LG :a set of protein samples formed by 44 proteins.* CF :a set of protein samples formed by 33 proteins."
PALJ810111	"Normalized frequency of beta-sheet in alpha+beta class (Palau et al., 1981)"	7118409	"Palau, J., Argos, P. and Puigdomenech, P."	"Protein secondary structureJ Int. J. Peptide Protein Res. 19, 394-401 (1981)"	"Int. J. Peptide Protein Res. 19, 394-401 (1981)* LG :a set of protein samples formed by 44 proteins.* CF :a set of protein samples formed by 33 proteins."
PALJ810112	"Normalized frequency of beta-sheet in alpha/beta class (Palau et al., 1981)"	7118409	"Palau, J., Argos, P. and Puigdomenech, P."	"Protein secondary structureJ Int. J. Peptide Protein Res. 19, 394-401 (1981)"	"Int. J. Peptide Protein Res. 19, 394-401 (1981)* LG :a set of protein samples formed by 44 proteins.* CF :a set of protein samples formed by 33 proteins."
PALJ810113	"Normalized frequency of turn in all-alpha class (Palau et al., 1981)"	7118409	"Palau, J., Argos, P. and Puigdomenech, P."	"Protein secondary structureJ Int. J. Peptide Protein Res. 19, 394-401 (1981)"	"Int. J. Peptide Protein Res. 19, 394-401 (1981)* LG :a set of protein samples formed by 44 proteins.* CF :a set of protein samples formed by 33 proteins.* (Arg Cys Leu Trp missing)"
PALJ810114	"Normalized frequency of turn in all-beta class (Palau et al., 1981)"	7118409	"Palau, J., Argos, P. and Puigdomenech, P."	"Protein secondary structureJ Int. J. Peptide Protein Res. 19, 394-401 (1981)"	"Int. J. Peptide Protein Res. 19, 394-401 (1981)* LG :a set of protein samples formed by 44 proteins.* CF :a set of protein samples formed by 33 proteins.* (Met missing)"
PALJ810115	"Normalized frequency of turn in alpha+beta class (Palau et al., 1981)"	7118409	"Palau, J., Argos, P. and Puigdomenech, P."	"Protein secondary structureJ Int. J. Peptide Protein Res. 19, 394-401 (1981)"	"Int. J. Peptide Protein Res. 19, 394-401 (1981)* LG :a set of protein samples formed by 44 proteins.* CF :a set of protein samples formed by 33 proteins."
PALJ810116	"Normalized frequency of turn in alpha/beta class (Palau et al., 1981)"	7118409	"Palau, J., Argos, P. and Puigdomenech, P."	"Protein secondary structureJ Int. J. Peptide Protein Res. 19, 394-401 (1981)"	"Int. J. Peptide Protein Res. 19, 394-401 (1981)* LG :a set of protein samples formed by 44 proteins.* CF :a set of protein samples formed by 33 proteins."
PARJ860101	"HPLC parameter (Parker et al., 1986)"	2430611	"Parker, J.M.R., Guo, D. and Hodges, R.S."	"New hydrophilicity scale derived from high-performance liquid chromatography peptide retention data: Correlation of predicted surface residues with antigencity and x-ray-derived accessible sitesJ Biochemistry 25, 5425-5432 (1986)"	"Biochemistry 25, 5425-5432 (1986)"
PLIV810101	"Partition coefficient (Pliska et al., 1981)"	0	"Pliska, V., Schmidt, M. and Fauchere, J.L."	"Partition coefficients of amino acids and hydrophobic parameters pi of their side-chains as measured by thin-layer chromatographyJ J. Chromatogr. 216, 79-92 (1981)"	"J. Chromatogr. 216, 79-92 (1981)* (Arg 0.25)"
PONP800101	"Surrounding hydrophobicity in folded form (Ponnuswamy et al., 1980)"	7397216	"Ponnuswamy, P.K., Prabhakaran, M. and Manavalan, P."	"Hydrophobic packing and spatial arrangement of amino acid residues in globular proteinsJ Biochim. Biophys. Acta 623, 301-316 (1980)"	"Biochim. Biophys. Acta 623, 301-316 (1980)"
PONP800102	"Average gain in surrounding hydrophobicity (Ponnuswamy et al., 1980)"	7397216	"Ponnuswamy, P.K., Prabhakaran, M. and Manavalan, P."	"Hydrophobic packing and spatial arrangement of amino acid residues in globular proteinsJ Biochim. Biophys. Acta 623, 301-316 (1980)"	"Biochim. Biophys. Acta 623, 301-316 (1980)"
PONP800103	"Average gain ratio in surrounding hydrophobicity (Ponnuswamy et al., 1980)"	7397216	"Ponnuswamy, P.K., Prabhakaran, M. and Manavalan, P."	"Hydrophobic packing and spatial arrangement of amino acid residues in globular proteinsJ Biochim. Biophys. Acta 623, 301-316 (1980)"	"Biochim. Biophys. Acta 623, 301-316 (1980)"
PONP800104	"Surrounding hydrophobicity in alpha-helix (Ponnuswamy et al., 1980)"	7397216	"Ponnuswamy, P.K., Prabhakaran, M. and Manavalan, P."	"Hydrophobic packing and spatial arrangement of amino acid residues in globular proteinsJ Biochim. Biophys. Acta 623, 301-316 (1980)"	"Biochim. Biophys. Acta 623, 301-316 (1980)"
PONP800105	"Surrounding hydrophobicity in beta-sheet (Ponnuswamy et al., 1980)"	7397216	"Ponnuswamy, P.K., Prabhakaran, M. and Manavalan, P."	"Hydrophobic packing and spatial arrangement of amino acid residues in globular proteinsJ Biochim. Biophys. Acta 623, 301-316 (1980)"	"Biochim. Biophys. Acta 623, 301-316 (1980)"
PONP800106	"Surrounding hydrophobicity in turn (Ponnuswamy et al., 1980)"	7397216	"Ponnuswamy, P.K., Prabhakaran, M. and Manavalan, P."	"Hydrophobic packing and spatial arrangement of amino acid residues in globular proteinsJ Biochim. Biophys. Acta 623, 301-316 (1980)"	"Biochim. Biophys. Acta 623, 301-316 (1980)"
PONP800107	"Accessibility reduction ratio (Ponnuswamy et al., 1980)"	7397216	"Ponnuswamy, P.K., Prabhakaran, M. and Manavalan, P."	"Hydrophobic packing and spatial arrangement of amino acid residues in globular proteinsJ Biochim. Biophys. Acta 623, 301-316 (1980)"	"Biochim. Biophys. Acta 623, 301-316 (1980)"
PONP800108	"Average number of surrounding residues (Ponnuswamy et al., 1980)"	7397216	"Ponnuswamy, P.K., Prabhakaran, M. and Manavalan, P."	"Hydrophobic packing and spatial arrangement of amino acid residues in globular proteinsJ Biochim. Biophys. Acta 623, 301-316 (1980)"	"Biochim. Biophys. Acta 623, 301-316 (1980)"
PRAM820101	"Intercept in regression analysis (Prabhakaran-Ponnuswamy, 1982)"	0	"Prabhakaran, M. and Ponnuswamy, P.K."	"Shape and surface features of globular proteinsJ Macromolecules 15, 314-320 (1982)"	"Macromolecules 15, 314-320 (1982)* Regression analysis of solvent contact area and spatial position"
PRAM820102	"Slope in regression analysis x 1.0E1 (Prabhakaran-Ponnuswamy, 1982)"	0	"Prabhakaran, M. and Ponnuswamy, P.K."	"Shape and surface features of globular proteinsJ Macromolecules 15, 314-320 (1982)"	"Macromolecules 15, 314-320 (1982)* Regression analysis of solvent contact area and spatial position"
PRAM820103	"Correlation coefficient in regression analysis (Prabhakaran-Ponnuswamy, 1982)"	0	"Prabhakaran, M. and Ponnuswamy, P.K."	"Shape and surface features of globular proteinsJ Macromolecules 15, 314-320 (1982)"	"Macromolecules 15, 314-320 (1982)* Regression analysis of solvent contact area and spatial position"
PRAM900101	"Hydrophobicity (Prabhakaran, 1990)"	2390062	"Prabhakaran, M."	"The distribution of physical, chemical and conformational properties in signal and nascent peptidesJ Biochem. J. 269, 691-696 (1990)"	"Biochem. J. 269, 691-696 (1990)* Original references:* Engelman, D.M., Steitz, T.A. and Terwilliger, T.C.* Annu. Rev. Biophys. Chem. 15, 321-353 (1986)"
PRAM900102	"Relative frequency in alpha-helix (Prabhakaran, 1990)"	2390062	"Prabhakaran, M."	"The distribution of physical, chemical and conformational properties in signal and nascent peptidesJ Biochem. J. 269, 691-696 (1990)"	"Biochem. J. 269, 691-696 (1990)* Original reference of these three data:* Creighton, T.E.* In ""Protein Structure and Melecular Properties"", (Freeman, W.H., ed.),* San Francisco P.235 (1983)"
PRAM900103	"Relative frequency in beta-sheet (Prabhakaran, 1990)"	2390062	"Prabhakaran, M."	"The distribution of physical, chemical and conformational properties in signal and nascent peptidesJ Biochem. J. 269, 691-696 (1990)"	"Biochem. J. 269, 691-696 (1990)* Original reference of these three data:* Creighton, T.E.* In ""Protein Structure and Melecular Properties"", (Freeman, W.H., ed.),* San Francisco P.235 (1983)"
PRAM900104	"Relative frequency in reverse-turn (Prabhakaran, 1990)"	2390062	"Prabhakaran, M."	"The distribution of physical, chemical and conformational properties in signal and nascent peptidesJ Biochem. J. 269, 691-696 (1990)"	"Biochem. J. 269, 691-696 (1990)* Original reference of these three data:* Creighton, T.E.* In ""Protein Structure and Melecular Properties"", (Freeman, W.H., ed.),* San Francisco P.235 (1983)"
PTIO830101	"Helix-coil equilibrium constant (Ptitsyn-Finkelstein, 1983)"	6673754	"Ptitsyn, O.B. and Finkelstein, A.V."	"Theory of protein secondary structure and algorithm of its predictionJ Biopolymers 22, 15-25 (1983)"	"Biopolymers 22, 15-25 (1983)* Charged state for Arg, His, Lys, Asp, and Glu"
PTIO830102	"Beta-coil equilibrium constant (Ptitsyn-Finkelstein, 1983)"	6673754	"Ptitsyn, O.B. and Finkelstein, A.V."	"Theory of protein secondary structure and algorithm of its predictionJ Biopolymers 22, 15-25 (1983)"	"Biopolymers 22, 15-25 (1983)* Charged state for Arg, His, Lys, Asp, and Glu"
QIAN880101	"Weights for alpha-helix at the window position of -6 (Qian-Sejnowski, 1988)"	3172241	"Qian, N. and Sejnowski, T.J."	"Predicting the secondary structure of globular proteins using neural network modelsJ J. Mol. Biol. 202, 865-884 (1988)"	"J. Mol. Biol. 202, 865-884 (1988)"
QIAN880102	"Weights for alpha-helix at the window position of -5 (Qian-Sejnowski, 1988)"	3172241	"Qian, N. and Sejnowski, T.J."	"Predicting the secondary structure of globular proteins using neural network modelsJ J. Mol. Biol. 202, 865-884 (1988)"	"J. Mol. Biol. 202, 865-884 (1988)"
QIAN880103	"Weights for alpha-helix at the window position of -4 (Qian-Sejnowski, 1988)"	3172241	"Qian, N. and Sejnowski, T.J."	"Predicting the secondary structure of globular proteins using neural network modelsJ J. Mol. Biol. 202, 865-884 (1988)"	"J. Mol. Biol. 202, 865-884 (1988)"
QIAN880104	"Weights for alpha-helix at the window position of -3 (Qian-Sejnowski, 1988)"	3172241	"Qian, N. and Sejnowski, T.J."	"Predicting the secondary structure of globular proteins using neural network modelsJ J. Mol. Biol. 202, 865-884 (1988)"	"J. Mol. Biol. 202, 865-884 (1988)"
QIAN880105	"Weights for alpha-helix at the window position of -2 (Qian-Sejnowski, 1988)"	3172241	"Qian, N. and Sejnowski, T.J."	"Predicting the secondary structure of globular proteins using neural network modelsJ J. Mol. Biol. 202, 865-884 (1988)"	"J. Mol. Biol. 202, 865-884 (1988)"
QIAN880106	"Weights for alpha-helix at the window position of -1 (Qian-Sejnowski, 1988)"	3172241	"Qian, N. and Sejnowski, T.J."	"Predicting the secondary structure of globular proteins using neural network modelsJ J. Mol. Biol. 202, 865-884 (1988)"	"J. Mol. Biol. 202, 865-884 (1988)"
QIAN880107	"Weights for alpha-helix at the window position of 0 (Qian-Sejnowski, 1988)"	3172241	"Qian, N. and Sejnowski, T.J."	"Predicting the secondary structure of globular proteins using neural network modelsJ J. Mol. Biol. 202, 865-884 (1988)"	"J. Mol. Biol. 202, 865-884 (1988)"
QIAN880108	"Weights for alpha-helix at the window position of 1 (Qian-Sejnowski, 1988)"	3172241	"Qian, N. and Sejnowski, T.J."	"Predicting the secondary structure of globular proteins using neural network modelsJ J. Mol. Biol. 202, 865-884 (1988)"	"J. Mol. Biol. 202, 865-884 (1988)"
QIAN880109	"Weights for alpha-helix at the window position of 2 (Qian-Sejnowski, 1988)"	3172241	"Qian, N. and Sejnowski, T.J."	"Predicting the secondary structure of globular proteins using neural network modelsJ J. Mol. Biol. 202, 865-884 (1988)"	"J. Mol. Biol. 202, 865-884 (1988)"
QIAN880110	"Weights for alpha-helix at the window position of 3 (Qian-Sejnowski, 1988)"	3172241	"Qian, N. and Sejnowski, T.J."	"Predicting the secondary structure of globular proteins using neural network modelsJ J. Mol. Biol. 202, 865-884 (1988)"	"J. Mol. Biol. 202, 865-884 (1988)"
QIAN880111	"Weights for alpha-helix at the window position of 4 (Qian-Sejnowski, 1988)"	3172241	"Qian, N. and Sejnowski, T.J."	"Predicting the secondary structure of globular proteins using neural network modelsJ J. Mol. Biol. 202, 865-884 (1988)"	"J. Mol. Biol. 202, 865-884 (1988)"
QIAN880112	"Weights for alpha-helix at the window position of 5 (Qian-Sejnowski, 1988)"	3172241	"Qian, N. and Sejnowski, T.J."	"Predicting the secondary structure of globular proteins using neural network modelsJ J. Mol. Biol. 202, 865-884 (1988)"	"J. Mol. Biol. 202, 865-884 (1988)"
QIAN880113	"Weights for alpha-helix at the window position of 6 (Qian-Sejnowski, 1988)"	3172241	"Qian, N. and Sejnowski, T.J."	"Predicting the secondary structure of globular proteins using neural network modelsJ J. Mol. Biol. 202, 865-884 (1988)"	"J. Mol. Biol. 202, 865-884 (1988)"
QIAN880114	"Weights for beta-sheet at the window position of -6 (Qian-Sejnowski, 1988)"	3172241	"Qian, N. and Sejnowski, T.J."	"Predicting the secondary structure of globular proteins using neural network modelsJ J. Mol. Biol. 202, 865-884 (1988)"	"J. Mol. Biol. 202, 865-884 (1988)"
QIAN880115	"Weights for beta-sheet at the window position of -5 (Qian-Sejnowski, 1988)"	3172241	"Qian, N. and Sejnowski, T.J."	"Predicting the secondary structure of globular proteins using neural network modelsJ J. Mol. Biol. 202, 865-884 (1988)"	"J. Mol. Biol. 202, 865-884 (1988)"
QIAN880116	"Weights for beta-sheet at the window position of -4 (Qian-Sejnowski, 1988)"	3172241	"Qian, N. and Sejnowski, T.J."	"Predicting the secondary structure of globular proteins using neural network modelsJ J. Mol. Biol. 202, 865-884 (1988)"	"J. Mol. Biol. 202, 865-884 (1988)"
QIAN880117	"Weights for beta-sheet at the window position of -3 (Qian-Sejnowski, 1988)"	3172241	"Qian, N. and Sejnowski, T.J."	"Predicting the secondary structure of globular proteins using neural network modelsJ J. Mol. Biol. 202, 865-884 (1988)"	"J. Mol. Biol. 202, 865-884 (1988)"
QIAN880118	"Weights for beta-sheet at the window position of -2 (Qian-Sejnowski, 1988)"	3172241	"Qian, N. and Sejnowski, T.J."	"Predicting the secondary structure of globular proteins using neural network modelsJ J. Mol. Biol. 202, 865-884 (1988)"	"J. Mol. Biol. 202, 865-884 (1988)"
QIAN880119	"Weights for beta-sheet at the window position of -1 (Qian-Sejnowski, 1988)"	3172241	"Qian, N. and Sejnowski, T.J."	"Predicting the secondary structure of globular proteins using neural network modelsJ J. Mol. Biol. 202, 865-884 (1988)"	"J. Mol. Biol. 202, 865-884 (1988)"
QIAN880120	"Weights for beta-sheet at the window position of 0 (Qian-Sejnowski, 1988)"	3172241	"Qian, N. and Sejnowski, T.J."	"Predicting the secondary structure of globular proteins using neural network modelsJ J. Mol. Biol. 202, 865-884 (1988)"	"J. Mol. Biol. 202, 865-884 (1988)"
QIAN880121	"Weights for beta-sheet at the window position of 1 (Qian-Sejnowski, 1988)"	3172241	"Qian, N. and Sejnowski, T.J."	"Predicting the secondary structure of globular proteins using neural network modelsJ J. Mol. Biol. 202, 865-884 (1988)"	"J. Mol. Biol. 202, 865-884 (1988)"
QIAN880122	"Weights for beta-sheet at the window position of 2 (Qian-Sejnowski, 1988)"	3172241	"Qian, N. and Sejnowski, T.J."	"Predicting the secondary structure of globular proteins using neural network modelsJ J. Mol. Biol. 202, 865-884 (1988)"	"J. Mol. Biol. 202, 865-884 (1988)"
QIAN880123	"Weights for beta-sheet at the window position of 3 (Qian-Sejnowski, 1988)"	3172241	"Qian, N. and Sejnowski, T.J."	"Predicting the secondary structure of globular proteins using neural network modelsJ J. Mol. Biol. 202, 865-884 (1988)"	"J. Mol. Biol. 202, 865-884 (1988)"
QIAN880124	"Weights for beta-sheet at the window position of 4 (Qian-Sejnowski, 1988)"	3172241	"Qian, N. and Sejnowski, T.J."	"Predicting the secondary structure of globular proteins using neural network modelsJ J. Mol. Biol. 202, 865-884 (1988)"	"J. Mol. Biol. 202, 865-884 (1988)"
QIAN880125	"Weights for beta-sheet at the window position of 5 (Qian-Sejnowski, 1988)"	3172241	"Qian, N. and Sejnowski, T.J."	"Predicting the secondary structure of globular proteins using neural network modelsJ J. Mol. Biol. 202, 865-884 (1988)"	"J. Mol. Biol. 202, 865-884 (1988)"
QIAN880126	"Weights for beta-sheet at the window position of 6 (Qian-Sejnowski, 1988)"	3172241	"Qian, N. and Sejnowski, T.J."	"Predicting the secondary structure of globular proteins using neural network modelsJ J. Mol. Biol. 202, 865-884 (1988)"	"J. Mol. Biol. 202, 865-884 (1988)"
QIAN880127	"Weights for coil at the window position of -6 (Qian-Sejnowski, 1988)"	3172241	"Qian, N. and Sejnowski, T.J."	"Predicting the secondary structure of globular proteins using neural network modelsJ J. Mol. Biol. 202, 865-884 (1988)"	"J. Mol. Biol. 202, 865-884 (1988)"
QIAN880128	"Weights for coil at the window position of -5 (Qian-Sejnowski, 1988)"	3172241	"Qian, N. and Sejnowski, T.J."	"Predicting the secondary structure of globular proteins using neural network modelsJ J. Mol. Biol. 202, 865-884 (1988)"	"J. Mol. Biol. 202, 865-884 (1988)"
QIAN880129	"Weights for coil at the window position of -4 (Qian-Sejnowski, 1988)"	3172241	"Qian, N. and Sejnowski, T.J."	"Predicting the secondary structure of globular proteins using neural network modelsJ J. Mol. Biol. 202, 865-884 (1988)"	"J. Mol. Biol. 202, 865-884 (1988)"
QIAN880130	"Weights for coil at the window position of -3 (Qian-Sejnowski, 1988)"	3172241	"Qian, N. and Sejnowski, T.J."	"Predicting the secondary structure of globular proteins using neural network modelsJ J. Mol. Biol. 202, 865-884 (1988)"	"J. Mol. Biol. 202, 865-884 (1988)"
QIAN880131	"Weights for coil at the window position of -2 (Qian-Sejnowski, 1988)"	3172241	"Qian, N. and Sejnowski, T.J."	"Predicting the secondary structure of globular proteins using neural network modelsJ J. Mol. Biol. 202, 865-884 (1988)"	"J. Mol. Biol. 202, 865-884 (1988)"
QIAN880132	"Weights for coil at the window position of -1 (Qian-Sejnowski, 1988)"	3172241	"Qian, N. and Sejnowski, T.J."	"Predicting the secondary structure of globular proteins using neural network modelsJ J. Mol. Biol. 202, 865-884 (1988)"	"J. Mol. Biol. 202, 865-884 (1988)"
QIAN880133	"Weights for coil at the window position of 0 (Qian-Sejnowski, 1988)"	3172241	"Qian, N. and Sejnowski, T.J."	"Predicting the secondary structure of globular proteins using neural network modelsJ J. Mol. Biol. 202, 865-884 (1988)"	"J. Mol. Biol. 202, 865-884 (1988)"
QIAN880134	"Weights for coil at the window position of 1 (Qian-Sejnowski, 1988)"	3172241	"Qian, N. and Sejnowski, T.J."	"Predicting the secondary structure of globular proteins using neural network modelsJ J. Mol. Biol. 202, 865-884 (1988)"	"J. Mol. Biol. 202, 865-884 (1988)"
QIAN880135	"Weights for coil at the window position of 2 (Qian-Sejnowski, 1988)"	3172241	"Qian, N. and Sejnowski, T.J."	"Predicting the secondary structure of globular proteins using neural network modelsJ J. Mol. Biol. 202, 865-884 (1988)"	"J. Mol. Biol. 202, 865-884 (1988)* (Gin !)"
QIAN880136	"Weights for coil at the window position of 3 (Qian-Sejnowski, 1988)"	3172241	"Qian, N. and Sejnowski, T.J."	"Predicting the secondary structure of globular proteins using neural network modelsJ J. Mol. Biol. 202, 865-884 (1988)"	"J. Mol. Biol. 202, 865-884 (1988)"
QIAN880137	"Weights for coil at the window position of 4 (Qian-Sejnowski, 1988)"	3172241	"Qian, N. and Sejnowski, T.J."	"Predicting the secondary structure of globular proteins using neural network modelsJ J. Mol. Biol. 202, 865-884 (1988)"	"J. Mol. Biol. 202, 865-884 (1988)"
QIAN880138	"Weights for coil at the window position of 5 (Qian-Sejnowski, 1988)"	3172241	"Qian, N. and Sejnowski, T.J."	"Predicting the secondary structure of globular proteins using neural network modelsJ J. Mol. Biol. 202, 865-884 (1988)"	"J. Mol. Biol. 202, 865-884 (1988)"
QIAN880139	"Weights for coil at the window position of 6 (Qian-Sejnowski, 1988)"	3172241	"Qian, N. and Sejnowski, T.J."	"Predicting the secondary structure of globular proteins using neural network modelsJ J. Mol. Biol. 202, 865-884 (1988)"	"J. Mol. Biol. 202, 865-884 (1988)"
RACS770101	"Average reduced distance for C-alpha (Rackovsky-Scheraga, 1977)"	271950	"Rackovsky, S. and Scheraga, H.A."	"Hydrophobicity, hydrophilicity, and the radial and orientational distributions of residues in native proteinsJ Proc. Natl. Acad. Sci. USA 74, 5248-5251 (1977)"	"Proc. Natl. Acad. Sci. USA 74, 5248-5251 (1977)"
RACS770102	"Average reduced distance for side chain (Rackovsky-Scheraga, 1977)"	271950	"Rackovsky, S. and Scheraga, H.A."	"Hydrophobicity, hydrophilicity, and the radial and orientational distributions of residues in native proteinsJ Proc. Natl. Acad. Sci. USA 74, 5248-5251 (1977)"	"Proc. Natl. Acad. Sci. USA 74, 5248-5251 (1977)* (Gly 0.080)"
RACS770103	"Side chain orientational preference (Rackovsky-Scheraga, 1977)"	271950	"Rackovsky, S. and Scheraga, H.A."	"Hydrophobicity, hydrophilicity, and the radial and orientational distributions of residues in native proteinsJ Proc. Natl. Acad. Sci. USA 74, 5248-5251 (1977)"	"Proc. Natl. Acad. Sci. USA 74, 5248-5251 (1977)* (Gly !)* (Ratio of the numbers of occurrences in two orientations)"
RACS820101	"Average relative fractional occurrence in A0(i) (Rackovsky-Scheraga, 1982)"	0	"Rackovsky, S. and Scheraga, H.A."	"Differential geometry and polymer conformation. 4. Conformational and nucleation properties of individual amino acidsJ Macromolecules 15, 1340-1346 (1982)"	"Macromolecules 15, 1340-1346 (1982)"
RACS820102	"Average relative fractional occurrence in AR(i) (Rackovsky-Scheraga, 1982)"	0	"Rackovsky, S. and Scheraga, H.A."	"Differential geometry and polymer conformation. 4. Conformational and nucleation properties of individual amino acidsJ Macromolecules 15, 1340-1346 (1982)"	"Macromolecules 15, 1340-1346 (1982)"
RACS820103	"Average relative fractional occurrence in AL(i) (Rackovsky-Scheraga, 1982)"	0	"Rackovsky, S. and Scheraga, H.A."	"Differential geometry and polymer conformation. 4. Conformational and nucleation properties of individual amino acidsJ Macromolecules 15, 1340-1346 (1982)"	"Macromolecules 15, 1340-1346 (1982)"
RACS820104	"Average relative fractional occurrence in EL(i) (Rackovsky-Scheraga, 1982)"	0	"Rackovsky, S. and Scheraga, H.A."	"Differential geometry and polymer conformation. 4. Conformational and nucleation properties of individual amino acidsJ Macromolecules 15, 1340-1346 (1982)"	"Macromolecules 15, 1340-1346 (1982)"
RACS820105	"Average relative fractional occurrence in E0(i) (Rackovsky-Scheraga, 1982)"	0	"Rackovsky, S. and Scheraga, H.A."	"Differential geometry and polymer conformation. 4. Conformational and nucleation properties of individual amino acidsJ Macromolecules 15, 1340-1346 (1982)"	"Macromolecules 15, 1340-1346 (1982)"
RACS820106	"Average relative fractional occurrence in ER(i) (Rackovsky-Scheraga, 1982)"	0	"Rackovsky, S. and Scheraga, H.A."	"Differential geometry and polymer conformation. 4. Conformational and nucleation properties of individual amino acidsJ Macromolecules 15, 1340-1346 (1982)"	"Macromolecules 15, 1340-1346 (1982)"
RACS820107	"Average relative fractional occurrence in A0(i-1) (Rackovsky-Scheraga, 1982)"	0	"Rackovsky, S. and Scheraga, H.A."	"Differential geometry and polymer conformation. 4. Conformational and nucleation properties of individual amino acidsJ Macromolecules 15, 1340-1346 (1982)"	"Macromolecules 15, 1340-1346 (1982)"
RACS820108	"Average relative fractional occurrence in AR(i-1) (Rackovsky-Scheraga, 1982)"	0	"Rackovsky, S. and Scheraga, H.A."	"Differential geometry and polymer conformation. 4. Conformational and nucleation properties of individual amino acidsJ Macromolecules 15, 1340-1346 (1982)"	"Macromolecules 15, 1340-1346 (1982)"
RACS820109	"Average relative fractional occurrence in AL(i-1) (Rackovsky-Scheraga, 1982)"	0	"Rackovsky, S. and Scheraga, H.A."	"Differential geometry and polymer conformation. 4. Conformational and nucleation properties of individual amino acidsJ Macromolecules 15, 1340-1346 (1982)"	"Macromolecules 15, 1340-1346 (1982)"
RACS820110	"Average relative fractional occurrence in EL(i-1) (Rackovsky-Scheraga, 1982)"	0	"Rackovsky, S. and Scheraga, H.A."	"Differential geometry and polymer conformation. 4. Conformational and nucleation properties of individual amino acidsJ Macromolecules 15, 1340-1346 (1982)"	"Macromolecules 15, 1340-1346 (1982)"
RACS820111	"Average relative fractional occurrence in E0(i-1) (Rackovsky-Scheraga, 1982)"	0	"Rackovsky, S. and Scheraga, H.A."	"Differential geometry and polymer conformation. 4. Conformational and nucleation properties of individual amino acidsJ Macromolecules 15, 1340-1346 (1982)"	"Macromolecules 15, 1340-1346 (1982)"
RACS820112	"Average relative fractional occurrence in ER(i-1) (Rackovsky-Scheraga, 1982)"	0	"Rackovsky, S. and Scheraga, H.A."	"Differential geometry and polymer conformation. 4. Conformational and nucleation properties of individual amino acidsJ Macromolecules 15, 1340-1346 (1982)"	"Macromolecules 15, 1340-1346 (1982)"
RACS820113	"Value of theta(i) (Rackovsky-Scheraga, 1982)"	0	"Rackovsky, S. and Scheraga, H.A."	"Differential geometry and polymer conformation. 4. Conformational and nucleation properties of individual amino acidsJ Macromolecules 15, 1340-1346 (1982)"	"Macromolecules 15, 1340-1346 (1982)"
RACS820114	"Value of theta(i-1) (Rackovsky-Scheraga, 1982)"	0	"Rackovsky, S. and Scheraga, H.A."	"Differential geometry and polymer conformation. 4. Conformational and nucleation properties of individual amino acidsJ Macromolecules 15, 1340-1346 (1982)"	"Macromolecules 15, 1340-1346 (1982)"
RADA880101	"Transfer free energy from chx to wat (Radzicka-Wolfenden, 1988)"	0	"Radzicka, A. and Wolfenden, R."	"Comparing the polarities of the amino acids: Side-chain distribution coefficients between the vapor phase, cyclohexane, 1-octanol, and neutral aqueous solutionJ Biochemistry 27, 1664-1670 (1988)"	"Biochemistry 27, 1664-1670 (1988)* (Pro missing)"
RADA880102	"Transfer free energy from oct to wat (Radzicka-Wolfenden, 1988)"	0	"Radzicka, A. and Wolfenden, R."	"Comparing the polarities of the amino acids: Side-chain distribution coefficients between the vapor phase, cyclohexane, 1-octanol, and neutral aqueous solutionJ Biochemistry 27, 1664-1670 (1988)"	"Biochemistry 27, 1664-1670 (1988)* (Pro Cys Asp missing)"
RADA880103	"Transfer free energy from vap to chx (Radzicka-Wolfenden, 1988)"	0	"Radzicka, A. and Wolfenden, R."	"Comparing the polarities of the amino acids: Side-chain distribution coefficients between the vapor phase, cyclohexane, 1-octanol, and neutral aqueous solutionJ Biochemistry 27, 1664-1670 (1988)"	"Biochemistry 27, 1664-1670 (1988)* (Pro missing)"
RADA880104	"Transfer free energy from chx to oct (Radzicka-Wolfenden, 1988)"	0	"Radzicka, A. and Wolfenden, R."	"Comparing the polarities of the amino acids: Side-chain distribution coefficients between the vapor phase, cyclohexane, 1-octanol, and neutral aqueous solutionJ Biochemistry 27, 1664-1670 (1988)"	"Biochemistry 27, 1664-1670 (1988)* (Pro Cys Asp missing)"
RADA880105	"Transfer free energy from vap to oct (Radzicka-Wolfenden, 1988)"	0	"Radzicka, A. and Wolfenden, R."	"Comparing the polarities of the amino acids: Side-chain distribution coefficients between the vapor phase, cyclohexane, 1-octanol, and neutral aqueous solutionJ Biochemistry 27, 1664-1670 (1988)"	"Biochemistry 27, 1664-1670 (1988)* (Pro Cys Asp missing)"
RADA880106	"Accessible surface area (Radzicka-Wolfenden, 1988)"	0	"Radzicka, A. and Wolfenden, R."	"Comparing the polarities of the amino acids: Side-chain distribution coefficients between the vapor phase, cyclohexane, 1-octanol, and neutral aqueous solutionJ Biochemistry 27, 1664-1670 (1988)"	"Biochemistry 27, 1664-1670 (1988)* (Pro missing)"
RADA880107	"Energy transfer from out to in(95%buried) (Radzicka-Wolfenden, 1988)"	0	"Radzicka, A. and Wolfenden, R."	"Comparing the polarities of the amino acids: Side-chain distribution coefficients between the vapor phase, cyclohexane, 1-octanol, and neutral aqueous solutionJ Biochemistry 27, 1664-1670 (1988)"	"Biochemistry 27, 1664-1670 (1988)* (Pro missing)"
RADA880108	"Mean polarity (Radzicka-Wolfenden, 1988)"	0	"Radzicka, A. and Wolfenden, R."	"Comparing the polarities of the amino acids: Side-chain distribution coefficients between the vapor phase, cyclohexane, 1-octanol, and neutral aqueous solutionJ Biochemistry 27, 1664-1670 (1988)"	"Biochemistry 27, 1664-1670 (1988)* (Pro missing)"
RICJ880101	"Relative preference value at N"" (Richardson-Richardson, 1988)"	3381086	"Richardson, J.S. and Richardson, D.C."	"Amino acid preferences for specific locations at the ends of alpha helicesJ Science 240, 1648-1652 (1988)"	"Science 240, 1648-1652 (1988)"
RICJ880102	"Relative preference value at N' (Richardson-Richardson, 1988)"	3381086	"Richardson, J.S. and Richardson, D.C."	"Amino acid preferences for specific locations at the ends of alpha helicesJ Science 240, 1648-1652 (1988)"	"Science 240, 1648-1652 (1988)"
RICJ880103	"Relative preference value at N-cap (Richardson-Richardson, 1988)"	3381086	"Richardson, J.S. and Richardson, D.C."	"Amino acid preferences for specific locations at the ends of alpha helicesJ Science 240, 1648-1652 (1988)"	"Science 240, 1648-1652 (1988)"
RICJ880104	"Relative preference value at N1 (Richardson-Richardson, 1988)"	3381086	"Richardson, J.S. and Richardson, D.C."	"Amino acid preferences for specific locations at the ends of alpha helicesJ Science 240, 1648-1652 (1988)"	"Science 240, 1648-1652 (1988)"
RICJ880105	"Relative preference value at N2 (Richardson-Richardson, 1988)"	3381086	"Richardson, J.S. and Richardson, D.C."	"Amino acid preferences for specific locations at the ends of alpha helicesJ Science 240, 1648-1652 (1988)"	"Science 240, 1648-1652 (1988)"
RICJ880106	"Relative preference value at N3 (Richardson-Richardson, 1988)"	3381086	"Richardson, J.S. and Richardson, D.C."	"Amino acid preferences for specific locations at the ends of alpha helicesJ Science 240, 1648-1652 (1988)"	"Science 240, 1648-1652 (1988)"
RICJ880107	"Relative preference value at N4 (Richardson-Richardson, 1988)"	3381086	"Richardson, J.S. and Richardson, D.C."	"Amino acid preferences for specific locations at the ends of alpha helicesJ Science 240, 1648-1652 (1988)"	"Science 240, 1648-1652 (1988)"
RICJ880108	"Relative preference value at N5 (Richardson-Richardson, 1988)"	3381086	"Richardson, J.S. and Richardson, D.C."	"Amino acid preferences for specific locations at the ends of alpha helicesJ Science 240, 1648-1652 (1988)"	"Science 240, 1648-1652 (1988)"
RICJ880109	"Relative preference value at Mid (Richardson-Richardson, 1988)"	3381086	"Richardson, J.S. and Richardson, D.C."	"Amino acid preferences for specific locations at the ends of alpha helicesJ Science 240, 1648-1652 (1988)"	"Science 240, 1648-1652 (1988)"
RICJ880110	"Relative preference value at C5 (Richardson-Richardson, 1988)"	3381086	"Richardson, J.S. and Richardson, D.C."	"Amino acid preferences for specific locations at the ends of alpha helicesJ Science 240, 1648-1652 (1988)"	"Science 240, 1648-1652 (1988)"
RICJ880111	"Relative preference value at C4 (Richardson-Richardson, 1988)"	3381086	"Richardson, J.S. and Richardson, D.C."	"Amino acid preferences for specific locations at the ends of alpha helicesJ Science 240, 1648-1652 (1988)"	"Science 240, 1648-1652 (1988)"
RICJ880112	"Relative preference value at C3 (Richardson-Richardson, 1988)"	3381086	"Richardson, J.S. and Richardson, D.C."	"Amino acid preferences for specific locations at the ends of alpha helicesJ Science 240, 1648-1652 (1988)"	"Science 240, 1648-1652 (1988)"
RICJ880113	"Relative preference value at C2 (Richardson-Richardson, 1988)"	3381086	"Richardson, J.S. and Richardson, D.C."	"Amino acid preferences for specific locations at the ends of alpha helicesJ Science 240, 1648-1652 (1988)"	"Science 240, 1648-1652 (1988)"
RICJ880114	"Relative preference value at C1 (Richardson-Richardson, 1988)"	3381086	"Richardson, J.S. and Richardson, D.C."	"Amino acid preferences for specific locations at the ends of alpha helicesJ Science 240, 1648-1652 (1988)"	"Science 240, 1648-1652 (1988)"
RICJ880115	"Relative preference value at C-cap (Richardson-Richardson, 1988)"	3381086	"Richardson, J.S. and Richardson, D.C."	"Amino acid preferences for specific locations at the ends of alpha helicesJ Science 240, 1648-1652 (1988)"	"Science 240, 1648-1652 (1988)"
RICJ880116	"Relative preference value at C' (Richardson-Richardson, 1988)"	3381086	"Richardson, J.S. and Richardson, D.C."	"Amino acid preferences for specific locations at the ends of alpha helicesJ Science 240, 1648-1652 (1988)"	"Science 240, 1648-1652 (1988)"
RICJ880117	"Relative preference value at C"" (Richardson-Richardson, 1988)"	3381086	"Richardson, J.S. and Richardson, D.C."	"Amino acid preferences for specific locations at the ends of alpha helicesJ Science 240, 1648-1652 (1988)"	"Science 240, 1648-1652 (1988)"
ROBB760101	"Information measure for alpha-helix (Robson-Suzuki, 1976)"	1003471	"Robson, B. and Suzuki, E."	"Conformational properties of amino acid residues in globular proteinsJ J. Mol. Biol. 107, 327-356 (1976)"	"J. Mol. Biol. 107, 327-356 (1976)"
ROBB760102	"Information measure for N-terminal helix (Robson-Suzuki, 1976)"	1003471	"Robson, B. and Suzuki, E."	"Conformational properties of amino acid residues in globular proteinsJ J. Mol. Biol. 107, 327-356 (1976)"	"J. Mol. Biol. 107, 327-356 (1976)"
ROBB760103	"Information measure for middle helix (Robson-Suzuki, 1976)"	1003471	"Robson, B. and Suzuki, E."	"Conformational properties of amino acid residues in globular proteinsJ J. Mol. Biol. 107, 327-356 (1976)"	"J. Mol. Biol. 107, 327-356 (1976)"
ROBB760104	"Information measure for C-terminal helix (Robson-Suzuki, 1976)"	1003471	"Robson, B. and Suzuki, E."	"Conformational properties of amino acid residues in globular proteinsJ J. Mol. Biol. 107, 327-356 (1976)"	"J. Mol. Biol. 107, 327-356 (1976)"
ROBB760105	"Information measure for extended (Robson-Suzuki, 1976)"	1003471	"Robson, B. and Suzuki, E."	"Conformational properties of amino acid residues in globular proteinsJ J. Mol. Biol. 107, 327-356 (1976)"	"J. Mol. Biol. 107, 327-356 (1976)"
ROBB760106	"Information measure for pleated-sheet (Robson-Suzuki, 1976)"	1003471	"Robson, B. and Suzuki, E."	"Conformational properties of amino acid residues in globular proteinsJ J. Mol. Biol. 107, 327-356 (1976)"	"J. Mol. Biol. 107, 327-356 (1976)"
ROBB760107	"Information measure for extended without H-bond (Robson-Suzuki, 1976)"	1003471	"Robson, B. and Suzuki, E."	"Conformational properties of amino acid residues in globular proteinsJ J. Mol. Biol. 107, 327-356 (1976)"	"J. Mol. Biol. 107, 327-356 (1976)"
ROBB760108	"Information measure for turn (Robson-Suzuki, 1976)"	1003471	"Robson, B. and Suzuki, E."	"Conformational properties of amino acid residues in globular proteinsJ J. Mol. Biol. 107, 327-356 (1976)"	"J. Mol. Biol. 107, 327-356 (1976)"
ROBB760109	"Information measure for N-terminal turn (Robson-Suzuki, 1976)"	1003471	"Robson, B. and Suzuki, E."	"Conformational properties of amino acid residues in globular proteinsJ J. Mol. Biol. 107, 327-356 (1976)"	"J. Mol. Biol. 107, 327-356 (1976)"
ROBB760110	"Information measure for middle turn (Robson-Suzuki, 1976)"	1003471	"Robson, B. and Suzuki, E."	"Conformational properties of amino acid residues in globular proteinsJ J. Mol. Biol. 107, 327-356 (1976)"	"J. Mol. Biol. 107, 327-356 (1976)"
ROBB760111	"Information measure for C-terminal turn (Robson-Suzuki, 1976)"	1003471	"Robson, B. and Suzuki, E."	"Conformational properties of amino acid residues in globular proteinsJ J. Mol. Biol. 107, 327-356 (1976)"	"J. Mol. Biol. 107, 327-356 (1976)"
ROBB760112	"Information measure for coil (Robson-Suzuki, 1976)"	1003471	"Robson, B. and Suzuki, E."	"Conformational properties of amino acid residues in globular proteinsJ J. Mol. Biol. 107, 327-356 (1976)"	"J. Mol. Biol. 107, 327-356 (1976)"
ROBB760113	"Information measure for loop (Robson-Suzuki, 1976)"	1003471	"Robson, B. and Suzuki, E."	"Conformational properties of amino acid residues in globular proteinsJ J. Mol. Biol. 107, 327-356 (1976)"	"J. Mol. Biol. 107, 327-356 (1976)"
ROBB790101	"Hydration free energy (Robson-Osguthorpe, 1979)"	513136	"Robson, B. and Osguthorpe, D.J."	"Refined models for computer simulation of protein folding: Applications to the study of conserved secondary structure and flexible hinge points during the folding of pancreatic trypsin inhibitorJ J. Mol. Biol. 132, 19-51 (1979)"	"J. Mol. Biol. 132, 19-51 (1979)* (Gly 0.67)"
ROSG850101	"Mean area buried on transfer (Rose et al., 1985)"	4023714	"Rose, G.D., Geselowitz, A.R., Lesser, G.J., Lee, R.H. and Zehfus, M.H."	"Hydrophobicity of amino acid residues in globular proteinsJ Science 229, 834-838 (1985)"	"Science 229, 834-838 (1985)"
ROSG850102	"Mean fractional area loss (Rose et al., 1985)"	4023714	"Rose, G.D., Geselowitz, A.R., Lesser, G.J., Lee, R.H. and Zehfus, M.H."	"Hydrophobicity of amino acid residues in globular proteinsJ Science 229, 834-838 (1985)"	"Science 229, 834-838 (1985)"
ROSM880101	"Side chain hydropathy, uncorrected for solvation (Roseman, 1988)"	3398047	"Roseman, M.A."	"Hydrophilicity of polar amino acid side-chains is markedly reduced by flanking peptide bondsJ J. Mol. Biol. 200, 513-522 (1988)"	"J. Mol. Biol. 200, 513-522 (1988)"
ROSM880102	"Side chain hydropathy, corrected for solvation (Roseman, 1988)"	3398047	"Roseman, M.A."	"Hydrophilicity of polar amino acid side-chains is markedly reduced by flanking peptide bondsJ J. Mol. Biol. 200, 513-522 (1988)"	"J. Mol. Biol. 200, 513-522 (1988)"
ROSM880103	"Loss of Side chain hydropathy by helix formation (Roseman, 1988)"	3398047	"Roseman, M.A."	"Hydrophilicity of polar amino acid side-chains is markedly reduced by flanking peptide bondsJ J. Mol. Biol. 200, 513-522 (1988)"	"J. Mol. Biol. 200, 513-522 (1988)"
SIMZ760101	"Transfer free energy (Simon, 1976), Cited by Charton-Charton (1982)"	0	"Simon, Z."	"J Quantum Biochemistry and Specific Interactions, Abacus Press, Tunbridge"	"Quantum Biochemistry and Specific Interactions, Abacus Press, Tunbridge Wells, Kent, England (1976)* Cited by Charton-Charton (1982)"
SNEP660101	"Principal component I (Sneath, 1966)"	4291386	"Sneath, P.H.A."	"Relations between chemical structure and biological activity in peptidesJ J. Theor. Biol. 12, 157-195 (1966)"	"J. Theor. Biol. 12, 157-195 (1966)"
SNEP660102	"Principal component II (Sneath, 1966)"	4291386	"Sneath, P.H.A."	"Relations between chemical structure and biological activity in peptidesJ J. Theor. Biol. 12, 157-195 (1966)"	"J. Theor. Biol. 12, 157-195 (1966)"
SNEP660103	"Principal component III (Sneath, 1966)"	4291386	"Sneath, P.H.A."	"Relations between chemical structure and biological activity in peptidesJ J. Theor. Biol. 12, 157-195 (1966)"	"J. Theor. Biol. 12, 157-195 (1966)"
SNEP660104	"Principal component IV (Sneath, 1966)"	4291386	"Sneath, P.H.A."	"Relations between chemical structure and biological activity in peptidesJ J. Theor. Biol. 12, 157-195 (1966)"	"J. Theor. Biol. 12, 157-195 (1966)"
SUEM840101	"Zimm-Bragg parameter s at 20 C (Sueki et al., 1984)"	0	"Sueki, M., Lee, S., Powers, S.P., Denton, J.B., Konishi, Y. and Scheraga,"	"Helix-coil stability constants for the naturally occurring amino acids in water. 22. Histidine parameters from random poly{(hydroxybutyl)glutamine-co-L-histidine}J Macromolecules 17, 148-155 (1984)"	"Macromolecules 17, 148-155 (1984)* Charged state for Arg, His, Asp, and Glu* (Cys Pro 0.100)"
SUEM840102	"Zimm-Bragg parameter sigma x 1.0E4 (Sueki et al., 1984)"	0	"Sueki, M., Lee, S., Powers, S.P., Denton, J.B., Konishi, Y. and Scheraga,"	"Helix-coil stability constants for the naturally occurring amino acids in water. 22. Histidine parameters from random poly{(hydroxybutyl)glutamine-co-L-histidine}J Macromolecules 17, 148-155 (1984)"	"Macromolecules 17, 148-155 (1984)* Charged state for Arg, His, Asp, and Glu* (Cys Pro !)"
SWER830101	"Optimal matching hydrophobicity (Sweet-Eisenberg, 1983)"	6663622	"Sweet, R.M. and Eisenberg, D."	"Correlation of sequence hydrophobicities measures similarity in three-dimensional protein structureJ J. Mol. Biol. 171, 479-488 (1983)"	"J. Mol. Biol. 171, 479-488 (1983)"
TANS770101	"Normalized frequency of alpha-helix (Tanaka-Scheraga, 1977)"	557155	"Tanaka, S. and Scheraga, H.A."	"Statistical mechanical treatment of protein conformation. 5. A multiphasic model for specific-sequence copolymers of amino acidsJ Macromolecules 10, 9-20 (1977)"	"Macromolecules 10, 9-20 (1977)* Recalculated by Kidera as normalized frequencies"
TANS770102	"Normalized frequency of isolated helix (Tanaka-Scheraga, 1977)"	557155	"Tanaka, S. and Scheraga, H.A."	"Statistical mechanical treatment of protein conformation. 5. A multiphasic model for specific-sequence copolymers of amino acidsJ Macromolecules 10, 9-20 (1977)"	"Macromolecules 10, 9-20 (1977)* Recalculated by Kidera as normalized frequencies"
TANS770103	"Normalized frequency of extended structure (Tanaka-Scheraga, 1977)"	557155	"Tanaka, S. and Scheraga, H.A."	"Statistical mechanical treatment of protein conformation. 5. A multiphasic model for specific-sequence copolymers of amino acidsJ Macromolecules 10, 9-20 (1977)"	"Macromolecules 10, 9-20 (1977)* Recalculated by Kidera as normalized frequencies"
TANS770104	"Normalized frequency of chain reversal R (Tanaka-Scheraga, 1977)"	557155	"Tanaka, S. and Scheraga, H.A."	"Statistical mechanical treatment of protein conformation. 5. A multiphasic model for specific-sequence copolymers of amino acidsJ Macromolecules 10, 9-20 (1977)"	"Macromolecules 10, 9-20 (1977)* Recalculated by Kidera as normalized frequencies"
TANS770105	"Normalized frequency of chain reversal S (Tanaka-Scheraga, 1977)"	557155	"Tanaka, S. and Scheraga, H.A."	"Statistical mechanical treatment of protein conformation. 5. A multiphasic model for specific-sequence copolymers of amino acidsJ Macromolecules 10, 9-20 (1977)"	"Macromolecules 10, 9-20 (1977)* Recalculated by Kidera as normalized frequencies"
TANS770106	"Normalized frequency of chain reversal D (Tanaka-Scheraga, 1977)"	557155	"Tanaka, S. and Scheraga, H.A."	"Statistical mechanical treatment of protein conformation. 5. A multiphasic model for specific-sequence copolymers of amino acidsJ Macromolecules 10, 9-20 (1977)"	"Macromolecules 10, 9-20 (1977)* Recalculated by Kidera as normalized frequencies"
TANS770107	"Normalized frequency of left-handed helix (Tanaka-Scheraga, 1977)"	557155	"Tanaka, S. and Scheraga, H.A."	"Statistical mechanical treatment of protein conformation. 5. A multiphasic model for specific-sequence copolymers of amino acidsJ Macromolecules 10, 9-20 (1977)"	"Macromolecules 10, 9-20 (1977)* Recalculated by Kidera as normalized frequencies"
TANS770108	"Normalized frequency of zeta R (Tanaka-Scheraga, 1977)"	557155	"Tanaka, S. and Scheraga, H.A."	"Statistical mechanical treatment of protein conformation. 5. A multiphasic model for specific-sequence copolymers of amino acidsJ Macromolecules 10, 9-20 (1977)"	"Macromolecules 10, 9-20 (1977)* Recalculated by Kidera as normalized frequencies"
TANS770109	"Normalized frequency of coil (Tanaka-Scheraga, 1977)"	557155	"Tanaka, S. and Scheraga, H.A."	"Statistical mechanical treatment of protein conformation. 5. A multiphasic model for specific-sequence copolymers of amino acidsJ Macromolecules 10, 9-20 (1977)"	"Macromolecules 10, 9-20 (1977)* Recalculated by Kidera as normalized frequencies"
TANS770110	"Normalized frequency of chain reversal (Tanaka-Scheraga, 1977)"	557155	"Tanaka, S. and Scheraga, H.A."	"Statistical mechanical treatment of protein conformation. 5. A multiphasic model for specific-sequence copolymers of amino acidsJ Macromolecules 10, 9-20 (1977)"	"Macromolecules 10, 9-20 (1977)* Recalculated by Kidera as normalized frequencies"
VASM830101	"Relative population of conformational state A (Vasquez et al., 1983)"	0	"Vasquez, M., Nemethy, G. and Scheraga, H.A."	"Computed conformational states of the 20 naturally occurring amino acid residues and of the prototype residue alpha-aminobutyric acidJ Macromolecules 16, 1043-1049 (1983)"	"Macromolecules 16, 1043-1049 (1983)"
VASM830102	"Relative population of conformational state C (Vasquez et al., 1983)"	0	"Vasquez, M., Nemethy, G. and Scheraga, H.A."	"Computed conformational states of the 20 naturally occurring amino acid residues and of the prototype residue alpha-aminobutyric acidJ Macromolecules 16, 1043-1049 (1983)"	"Macromolecules 16, 1043-1049 (1983)"
VASM830103	"Relative population of conformational state E (Vasquez et al., 1983)"	0	"Vasquez, M., Nemethy, G. and Scheraga, H.A."	"Computed conformational states of the 20 naturally occurring amino acid residues and of the prototype residue alpha-aminobutyric acidJ Macromolecules 16, 1043-1049 (1983)"	"Macromolecules 16, 1043-1049 (1983)* (Pro !)"
VELV850101	"Electron-ion interaction potential (Veljkovic et al., 1985)"	0	"Veljkovic, V., Cosic, I., Dimitrijevic, B. and Lalovic, D."	"Is it possible to analyze DNA and protein sequences by the method of digital signal processing?J IEEE Trans. Biomed. Eng. 32, 337-341 (1985)"	"IEEE Trans. Biomed. Eng. 32, 337-341 (1985)"
VENT840101	"Bitterness (Venanzi, 1984)"	6521488	"Venanzi, T.J."	"Hydrophobicity parameters and the bitter taste of L-amino acidsJ J. Theor. Biol. 111, 447-450 (1984)"	"J. Theor. Biol. 111, 447-450 (1984)"
VHEG790101	"Transfer free energy to lipophilic phase (von Heijne-Blomberg, 1979)"	477664	"von Heijne, G. and Blomberg, C."	"Trans-membrane translocation of proteins: The direct transfer modelJ Eur. J. Biochem. 97, 175-181 (1979)"	"Eur. J. Biochem. 97, 175-181 (1979)"
WARP780101	"Average interactions per side chain atom (Warme-Morgan, 1978)"	633361	"Warme, P.K. and Morgan, R.S."	"A survey of amino acid side-chain interactions in 21 proteinsJ J. Mol. Biol. 118, 289-304 (1978)"	"J. Mol. Biol. 118, 289-304 (1978)* (Gly 0.81)"
WEBA780101	"RF value in high salt chromatography (Weber-Lacey, 1978)"	691071	"Weber, A.L. and Lacey, J.C.,Jr."	"Genetic code correlations: Amino acids and their anticodon nucleotidesJ J. Mol. Evol. 11, 199-210 (1978)"	"J. Mol. Evol. 11, 199-210 (1978)"
WERD780101	"Propensity to be buried inside (Wertz-Scheraga, 1978)"	621952	"Wertz, D.H. and Scheraga, H.A."	"Influence of water on protein structure. An analysis of the preferences of amino acid residues for the inside or outside and for specific conformations in a protein moleculeJ Macromolecules 11, 9-15 (1978)"	"Macromolecules 11, 9-15 (1978)* Adjusted values"
WERD780102	"Free energy change of epsilon(i) to epsilon(ex) (Wertz-Scheraga, 1978)"	621952	"Wertz, D.H. and Scheraga, H.A."	"Influence of water on protein structure. An analysis of the preferences of amino acid residues for the inside or outside and for specific conformations in a protein moleculeJ Macromolecules 11, 9-15 (1978)"	"Macromolecules 11, 9-15 (1978)* Adjusted values"
WERD780103	"Free energy change of alpha(Ri) to alpha(Rh) (Wertz-Scheraga, 1978)"	621952	"Wertz, D.H. and Scheraga, H.A."	"Influence of water on protein structure. An analysis of the preferences of amino acid residues for the inside or outside and for specific conformations in a protein moleculeJ Macromolecules 11, 9-15 (1978)"	"Macromolecules 11, 9-15 (1978)* Adjusted values* (Met !)"
WERD780104	"Free energy change of epsilon(i) to alpha(Rh) (Wertz-Scheraga, 1978)"	621952	"Wertz, D.H. and Scheraga, H.A."	"Influence of water on protein structure. An analysis of the preferences of amino acid residues for the inside or outside and for specific conformations in a protein moleculeJ Macromolecules 11, 9-15 (1978)"	"Macromolecules 11, 9-15 (1978)* Adjusted values"
WOEC730101	"Polar requirement (Woese, 1973)"	4588588	"Woese, C.R."	"Evolution of genetic codeJ Naturwiss. 60, 447-459 (1973)"	"Naturwiss. 60, 447-459 (1973)"
WOLR810101	"Hydration potential (Wolfenden et al., 1981)"	7213619	"Wolfenden, R. andersson, L., Cullis, P.M. and Southgate, C.C.B."	"Affinties of amino acid side chains for solvent waterJ Biochemistry 20, 849-855 (1981)"	"Biochemistry 20, 849-855 (1981)* (Pro 2.9)"
WOLS870101	"Principal property value z1 (Wold et al., 1987)"	0	"Wold, S., Eriksson, L., Hellberg, S., Jonsson, J., Sjostrom, M., Skagerberg,"	"Principal property values for six non-natural amino acids and their application to a structure-activity relationship for oxytocin peptide analoguesJ Can. J. Chem. 65, 1814-1820 (1987)"	"Can. J. Chem. 65, 1814-1820 (1987)"
WOLS870102	"Principal property value z2 (Wold et al., 1987)"	0	"Wold, S., Eriksson, L., Hellberg, S., Jonsson, J., Sjostrom, M., Skagerberg,"	"Principal property values for six non-natural amino acids and their application to a structure-activity relationship for oxytocin peptide analoguesJ Can. J. Chem. 65, 1814-1820 (1987)"	"Can. J. Chem. 65, 1814-1820 (1987)"
WOLS870103	"Principal property value z3 (Wold et al., 1987)"	0	"Wold, S., Eriksson, L., Hellberg, S., Jonsson, J., Sjostrom, M., Skagerberg,"	"Principal property values for six non-natural amino acids and their application to a structure-activity relationship for oxytocin peptide analoguesJ Can. J. Chem. 65, 1814-1820 (1987)"	"Can. J. Chem. 65, 1814-1820 (1987)"
YUTK870101	"Unfolding Gibbs energy in water, pH7.0 (Yutani et al., 1987)"	3299367	"Yutani, K., Ogasahara, K., Tsujita, T. and Sugino, Y."	"Dependence of conformational stability on hydrophobicity of the amino acid residue in a series of variant proteins substituted at a unique position of tryptophan synthase alpha subunitJ Proc. Natl. Acad. Sci. USA 84, 4441-4444 (1987)"	"Proc. Natl. Acad. Sci. USA 84, 4441-4444 (1987)* (Arg missing)"
YUTK870102	"Unfolding Gibbs energy in water, pH9.0 (Yutani et al., 1987)"	3299367	"Yutani, K., Ogasahara, K., Tsujita, T. and Sugino, Y."	"Dependence of conformational stability on hydrophobicity of the amino acid residue in a series of variant proteins substituted at a unique position of tryptophan synthase alpha subunitJ Proc. Natl. Acad. Sci. USA 84, 4441-4444 (1987)"	"Proc. Natl. Acad. Sci. USA 84, 4441-4444 (1987)* (Arg missing)"
YUTK870103	"Activation Gibbs energy of unfolding, pH7.0 (Yutani et al., 1987)"	3299367	"Yutani, K., Ogasahara, K., Tsujita, T. and Sugino, Y."	"Dependence of conformational stability on hydrophobicity of the amino acid residue in a series of variant proteins substituted at a unique position of tryptophan synthase alpha subunitJ Proc. Natl. Acad. Sci. USA 84, 4441-4444 (1987)"	"Proc. Natl. Acad. Sci. USA 84, 4441-4444 (1987)* (Arg missing)"
YUTK870104	"Activation Gibbs energy of unfolding, pH9.0 (Yutani et al., 1987)"	3299367	"Yutani, K., Ogasahara, K., Tsujita, T. and Sugino, Y."	"Dependence of conformational stability on hydrophobicity of the amino acid residue in a series of variant proteins substituted at a unique position of tryptophan synthase alpha subunitJ Proc. Natl. Acad. Sci. USA 84, 4441-4444 (1987)"	"Proc. Natl. Acad. Sci. USA 84, 4441-4444 (1987)* (Arg missing)"
ZASB820101	"Dependence of partition coefficient on ionic strength (Zaslavsky et al., 1982)"	0	"Zaslavsky, B.Yu, Mestechkina, N.M., Miheeva, L.M. and Rogozhin, S.V."	"Measurement of relative hydrophobicity of amino acid side-chains by partition in an aqueous two-phase polymeric system: Hydrophobicity scale for non-polar and ionogenic side-chainsJ J. Chromatogr. 240, 21-28 (1982)"	"J. Chromatogr. 240, 21-28 (1982)* (C H Y missing?)"
ZIMJ680101	"Hydrophobicity (Zimmerman et al., 1968)"	5700434	"Zimmerman, J.M., Eliezer, N. and Simha, R."	"The characterization of amino acid sequences in proteins by statistical methodsJ J. Theor. Biol. 21, 170-201 (1968)"	"J. Theor. Biol. 21, 170-201 (1968)"
ZIMJ680102	"Bulkiness (Zimmerman et al., 1968)"	5700434	"Zimmerman, J.M., Eliezer, N. and Simha, R."	"The characterization of amino acid sequences in proteins by statistical methodsJ J. Theor. Biol. 21, 170-201 (1968)"	"J. Theor. Biol. 21, 170-201 (1968)"
ZIMJ680103	"Polarity (Zimmerman et al., 1968)"	5700434	"Zimmerman, J.M., Eliezer, N. and Simha, R."	"The characterization of amino acid sequences in proteins by statistical methodsJ J. Theor. Biol. 21, 170-201 (1968)"	"J. Theor. Biol. 21, 170-201 (1968)"
ZIMJ680104	"Isoelectric point (Zimmerman et al., 1968)"	5700434	"Zimmerman, J.M., Eliezer, N. and Simha, R."	"The characterization of amino acid sequences in proteins by statistical methodsJ J. Theor. Biol. 21, 170-201 (1968)"	"J. Theor. Biol. 21, 170-201 (1968)"
ZIMJ680105	"RF rank (Zimmerman et al., 1968)"	5700434	"Zimmerman, J.M., Eliezer, N. and Simha, R."	"The characterization of amino acid sequences in proteins by statistical methodsJ J. Theor. Biol. 21, 170-201 (1968)"	"J. Theor. Biol. 21, 170-201 (1968)"
AURR980101	"Normalized positional residue frequency at helix termini N4'(Aurora-Rose, 1998)"	9514257	"Aurora, R. and Rose, G."	"Helix cappingJ Protein Science 7, 21-38 (1998)"	"Protein Science 7, 21-38 (1998)"
AURR980102	"Normalized positional residue frequency at helix termini N""' (Aurora-Rose, 1998)"	9514257	"Aurora, R. and Rose, G."	"Helix cappingJ Protein Science 7, 21-38 (1998)"	"Protein Science 7, 21-38 (1998)"
AURR980103	"Normalized positional residue frequency at helix termini N"" (Aurora-Rose, 1998)"	9514257	"Aurora, R. and Rose, G."	"Helix cappingJ Protein Science 7, 21-38 (1998)"	"Protein Science 7, 21-38 (1998)"
AURR980104	"Normalized positional residue frequency at helix termini N'(Aurora-Rose, 1998)"	9514257	"Aurora, R. and Rose, G."	"Helix cappingJ Protein Science 7, 21-38 (1998)"	"Protein Science 7, 21-38 (1998)"
AURR980105	"Normalized positional residue frequency at helix termini Nc (Aurora-Rose, 1998)"	9514257	"Aurora, R. and Rose, G."	"Helix cappingJ Protein Science 7, 21-38 (1998)"	"Protein Science 7, 21-38 (1998)"
AURR980106	"Normalized positional residue frequency at helix termini N1 (Aurora-Rose, 1998)"	9514257	"Aurora, R. and Rose, G."	"Helix cappingJ Protein Science 7, 21-38 (1998)"	"Protein Science 7, 21-38 (1998)"
AURR980107	"Normalized positional residue frequency at helix termini N2 (Aurora-Rose, 1998)"	9514257	"Aurora, R. and Rose, G."	"Helix cappingJ Protein Science 7, 21-38 (1998)"	"Protein Science 7, 21-38 (1998)"
AURR980108	"Normalized positional residue frequency at helix termini N3 (Aurora-Rose, 1998)"	9514257	"Aurora, R. and Rose, G."	"Helix cappingJ Protein Science 7, 21-38 (1998)"	"Protein Science 7, 21-38 (1998)"
AURR980109	"Normalized positional residue frequency at helix termini N4 (Aurora-Rose, 1998)"	9514257	"Aurora, R. and Rose, G."	"Helix cappingJ Protein Science 7, 21-38 (1998)"	"Protein Science 7, 21-38 (1998)"
AURR980110	"Normalized positional residue frequency at helix termini N5 (Aurora-Rose, 1998)"	9514257	"Aurora, R. and Rose, G."	"Helix cappingJ Protein Science 7, 21-38 (1998)"	"Protein Science 7, 21-38 (1998)"
AURR980111	"Normalized positional residue frequency at helix termini C5 (Aurora-Rose, 1998)"	9514257	"Aurora, R. and Rose, G."	"Helix cappingJ Protein Science 7, 21-38 (1998)"	"Protein Science 7, 21-38 (1998)"
AURR980112	"Normalized positional residue frequency at helix termini C4 (Aurora-Rose, 1998)"	9514257	"Aurora, R. and Rose, G."	"Helix cappingJ Protein Science 7, 21-38 (1998)"	"Protein Science 7, 21-38 (1998)"
AURR980113	"Normalized positional residue frequency at helix termini C3 (Aurora-Rose, 1998)"	9514257	"Aurora, R. and Rose, G."	"Helix cappingJ Protein Science 7, 21-38 (1998)"	"Protein Science 7, 21-38 (1998)"
AURR980114	"Normalized positional residue frequency at helix termini C2 (Aurora-Rose, 1998)"	9514257	"Aurora, R. and Rose, G."	"Helix cappingJ Protein Science 7, 21-38 (1998)"	"Protein Science 7, 21-38 (1998)"
AURR980115	"Normalized positional residue frequency at helix termini C1 (Aurora-Rose, 1998)"	9514257	"Aurora, R. and Rose, G."	"Helix cappingJ Protein Science 7, 21-38 (1998)"	"Protein Science 7, 21-38 (1998)"
AURR980116	"Normalized positional residue frequency at helix termini Cc (Aurora-Rose, 1998)"	9514257	"Aurora, R. and Rose, G."	"Helix cappingJ Protein Science 7, 21-38 (1998)"	"Protein Science 7, 21-38 (1998)"
AURR980117	"Normalized positional residue frequency at helix termini C' (Aurora-Rose, 1998)"	9514257	"Aurora, R. and Rose, G."	"Helix cappingJ Protein Science 7, 21-38 (1998)"	"Protein Science 7, 21-38 (1998)"
AURR980118	"Normalized positional residue frequency at helix termini C"" (Aurora-Rose, 1998)"	9514257	"Aurora, R. and Rose, G."	"Helix cappingJ Protein Science 7, 21-38 (1998)"	"Protein Science 7, 21-38 (1998)"
AURR980119	"Normalized positional residue frequency at helix termini C""' (Aurora-Rose, 1998)"	9514257	"Aurora, R. and Rose, G."	"Helix cappingJ Protein Science 7, 21-38 (1998)"	"Protein Science 7, 21-38 (1998)"
AURR980120	"Normalized positional residue frequency at helix termini C4' (Aurora-Rose, 1998)"	9514257	"Aurora, R. and Rose, G."	"Helix cappingJ Protein Science 7, 21-38 (1998)"	"Protein Science 7, 21-38 (1998)"
ONEK900101	"Delta G values for the peptides extrapolated to 0 M urea (O'Neil-DeGrado, 1990)"	2237415	"O'Neil, K.T. and DeGrado, W.F."	"A thermodynamic scale for the helix-forming tendencies of the commonly occurring amino acidsJ Science 250, 646-651 (1990)"	"Science 250, 646-651 (1990)"
ONEK900102	"Helix formation parameters (delta delta G) (O'Neil-DeGrado, 1990)"	2237415	"O'Neil, K.T. and DeGrado, W.F."	"A thermodynamic scale for the helix-forming tendencies of the commonly occurring amino acidsJ Science 250, 646-651 (1990)"	"Science 250, 646-651 (1990)"
VINM940101	"Normalized flexibility parameters (B-values), average (Vihinen et al., 1994)"	8090708	"Vihinen, M., Torkkila, E. and Riikonen, P."	"Accuracy of protein flexibility predictionsJ Proteins 19, 141-149 (1994)"	"Proteins 19, 141-149 (1994)"
VINM940102	"Normalized flexibility parameters (B-values) for each residue surrounded by none rigid neighbours (Vihinen et al., 1994)"	8090708	"Vihinen, M., Torkkila, E. and Riikonen, P."	"Accuracy of protein flexibility predictionsJ Proteins 19, 141-149 (1994)"	"Proteins 19, 141-149 (1994)"
VINM940103	"Normalized flexibility parameters (B-values) for each residue surrounded by one rigid neighbours (Vihinen et al., 1994)"	8090708	"Vihinen, M., Torkkila, E. and Riikonen, P."	"Accuracy of protein flexibility predictionsJ Proteins 19, 141-149 (1994)"	"Proteins 19, 141-149 (1994)"
VINM940104	"Normalized flexibility parameters (B-values) for each residue surrounded by two rigid neighbours (Vihinen et al., 1994)"	8090708	"Vihinen, M., Torkkila, E. and Riikonen, P."	"Accuracy of protein flexibility predictionsJ Proteins 19, 141-149 (1994)"	"Proteins 19, 141-149 (1994)"
MUNV940101	"Free energy in alpha-helical conformation (Munoz-Serrano, 1994)"	7731949	"Munoz, V. and Serrano, L."	"Intrinsic secondary structure propensities of the amino acids, using statistical phi-psi matrices: comparison with experimental scalesJ Proteins 20, 301-311 (1994)"	"Proteins 20, 301-311 (1994)"
MUNV940102	"Free energy in alpha-helical region (Munoz-Serrano, 1994)"	7731949	"Munoz, V. and Serrano, L."	"Intrinsic secondary structure propensities of the amino acids, using statistical phi-psi matrices: comparison with experimental scalesJ Proteins 20, 301-311 (1994)"	"Proteins 20, 301-311 (1994)"
MUNV940103	"Free energy in beta-strand conformation (Munoz-Serrano, 1994)"	7731949	"Munoz, V. and Serrano, L."	"Intrinsic secondary structure propensities of the amino acids, using statistical phi-psi matrices: comparison with experimental scalesJ Proteins 20, 301-311 (1994)"	"Proteins 20, 301-311 (1994)"
MUNV940104	"Free energy in beta-strand region (Munoz-Serrano, 1994)"	7731949	"Munoz, V. and Serrano, L."	"Intrinsic secondary structure propensities of the amino acids, using statistical phi-psi matrices: comparison with experimental scalesJ Proteins 20, 301-311 (1994)"	"Proteins 20, 301-311 (1994)"
MUNV940105	"Free energy in beta-strand region (Munoz-Serrano, 1994)"	7731949	"Munoz, V. and Serrano, L."	"Intrinsic secondary structure propensities of the amino acids, using statistical phi-psi matrices: comparison with experimental scalesJ Proteins 20, 301-311 (1994)"	"Proteins 20, 301-311 (1994)"
WIMW960101	"Free energies of transfer of AcWl-X-LL peptides from bilayer interface to water (Wimley-White, 1996)"	8836100	"Wimley, W.C. and White, S."	"Experimentally determined hydrophobicity scale for proteins at membrane interfacesJ Nature Structual biol. 3, 842-848 (1996)"	"Nature Structual biol. 3, 842-848 (1996)"
KIMC930101	"Thermodynamic beta sheet propensity (Kim-Berg, 1993)"	8459852	"Kim, C.A. and Berg, J.M."	"Thermodynamic beta-sheet propensities measured using a zinc-finger host peptideJ Nature 362, 267-270 (1993)"	"Nature 362, 267-270 (1993)"
MONM990101	"Turn propensity scale for transmembrane helices (Monne et al., 1999)"	10329132	"Monne, M., Hermansson, M. and von Heijne, G."	"A turn propensity scale for transmembrane helicesJ J. Mol. Biol. 288, 141-145 (1999)"	"J. Mol. Biol. 288, 141-145 (1999)"
BLAM930101	"Alpha helix propensity of position 44 in T4 lysozyme (Blaber et al., 1993)"	8503008	"Blaber, M., Zhang, X.J. and Matthews, B.W."	"Structural basis of amino acid alpha helix propensityJ Science 260, 1637-1640 (1993)"	"Science 260, 1637-1640 (1993)"
PARS000101	"p-Values of mesophilic proteins based on the distributions of B values (Parthasarathy-Murthy, 2000)"	10679524	"Parthasarathy, S. and Murthy, M.R."	"Protein thermal stability: insights from atomic displacement parameters (B values)J Protein Eng. 13, 9-13 (2000)"	"Protein Eng. 13, 9-13 (2000)"
PARS000102	"p-Values of thermophilic proteins based on the distributions of B values (Parthasarathy-Murthy, 2000)"	10679524	"Parthasarathy, S. and Murthy, M.R."	"Protein thermal stability: insights from atomic displacement parameters (B values)J Protein Eng. 13, 9-13 (2000)"	"Protein Eng. 13, 9-13 (2000)"
KUMS000101	"Distribution of amino acid residues in the 18 non-redundant families of thermophilic proteins (Kumar et al., 2000)"	10775659	"Kumar, S., Tsai, C.J. and Nussinov, R."	"Factors enhancing protein thermostabilityJ Protein Eng. 13, 179-191 (2000)"	"Protein Eng. 13, 179-191 (2000)"
KUMS000102	"Distribution of amino acid residues in the 18 non-redundant families of mesophilic proteins (Kumar et al., 2000)"	10775659	"Kumar, S., Tsai, C.J. and Nussinov, R."	"Factors enhancing protein thermostabilityJ Protein Eng. 13, 179-191 (2000)"	"Protein Eng. 13, 179-191 (2000)"
KUMS000103	"Distribution of amino acid residues in the alpha-helices in thermophilic proteins (Kumar et al., 2000)"	10775659	"Kumar, S., Tsai, C.J. and Nussinov, R."	"Factors enhancing protein thermostabilityJ Protein Eng. 13, 179-191 (2000)"	"Protein Eng. 13, 179-191 (2000)"
KUMS000104	"Distribution of amino acid residues in the alpha-helices in mesophilic proteins (Kumar et al., 2000)"	10775659	"Kumar, S., Tsai, C.J. and Nussinov, R."	"Factors enhancing protein thermostabilityJ Protein Eng. 13, 179-191 (2000)"	"Protein Eng. 13, 179-191 (2000)"
TAKK010101	"Side-chain contribution to protein stability (kJ/mol) (Takano-Yutani, 2001)"	11579219	"Takano, K., Yutani, K."	"A new scale for side-chain contribution to protein stability based on the empirical stability analysis of mutant proteinsJ Protein Eng. 14, 525-528 (2001)"	"Protein Eng. 14, 525-528 (2001)"
FODM020101	"Propensity of amino acids within pi-helices (Fodje-Al-Karadaghi, 2002)"	12034854	"Fodje, M.N. and Al-Karadaghi, S."	"Occurrence, conformational features and amino acid propensities for the pi-helixJ Protein Eng. 15, 353-358 (2002)"	"Protein Eng. 15, 353-358 (2002)"
NADH010101	"Hydropathy scale based on self-information values in the two-state model (5% accessibility) (Naderi-Manesh et al., 2001)"	11170200	"Naderi-Manesh, H., Sadeghi, M., Arab, S. and Moosavi Movahedi, A.A."	"Prediction of protein surface accessibility with information theoryJ Proteins. 42, 452-459 (2001)"	"Proteins. 42, 452-459 (2001)"
NADH010102	"Hydropathy scale based on self-information values in the two-state model (9% accessibility) (Naderi-Manesh et al., 2001)"	11170200	"Naderi-Manesh, H., Sadeghi, M., Arab, S. and Moosavi Movahedi, A.A."	"Prediction of protein surface accessibility with information theoryJ Proteins. 42, 452-459 (2001)"	"Proteins. 42, 452-459 (2001)"
NADH010103	"Hydropathy scale based on self-information values in the two-state model (16% accessibility) (Naderi-Manesh et al., 2001)"	11170200	"Naderi-Manesh, H., Sadeghi, M., Arab, S. and Moosavi Movahedi, A.A."	"Prediction of protein surface accessibility with information theoryJ Proteins. 42, 452-459 (2001)"	"Proteins. 42, 452-459 (2001)"
NADH010104	"Hydropathy scale based on self-information values in the two-state model (20% accessibility) (Naderi-Manesh et al., 2001)"	11170200	"Naderi-Manesh, H., Sadeghi, M., Arab, S. and Moosavi Movahedi, A.A."	"Prediction of protein surface accessibility with information theoryJ Proteins. 42, 452-459 (2001)"	"Proteins. 42, 452-459 (2001)"
NADH010105	"Hydropathy scale based on self-information values in the two-state model (25% accessibility) (Naderi-Manesh et al., 2001)"	11170200	"Naderi-Manesh, H., Sadeghi, M., Arab, S. and Moosavi Movahedi, A.A."	"Prediction of protein surface accessibility with information theoryJ Proteins. 42, 452-459 (2001)"	"Proteins. 42, 452-459 (2001)"
NADH010106	"Hydropathy scale based on self-information values in the two-state model (36% accessibility) (Naderi-Manesh et al., 2001)"	11170200	"Naderi-Manesh, H., Sadeghi, M., Arab, S. and Moosavi Movahedi, A.A."	"Prediction of protein surface accessibility with information theoryJ Proteins. 42, 452-459 (2001)"	"Proteins. 42, 452-459 (2001)"
NADH010107	"Hydropathy scale based on self-information values in the two-state model (50% accessibility) (Naderi-Manesh et al., 2001)"	11170200	"Naderi-Manesh, H., Sadeghi, M., Arab, S. and Moosavi Movahedi, A.A."	"Prediction of protein surface accessibility with information theoryJ Proteins. 42, 452-459 (2001)"	"Proteins. 42, 452-459 (2001)"
MONM990201	"Averaged turn propensities in a transmembrane helix (Monne et al., 1999)"	10543969	"Monne, M., Nilsson, I., Elofsson, A. and von Heijne, G."	"Turns in transmembrane helices: determination of the minimal length of a ""helical hairpin"" and derivation of a fine-grained turn propensity scaleJ J Mol Biol. 293, 807-814 (1999)"	"J Mol Biol. 293, 807-814 (1999)"
KOEP990101	"Alpha-helix propensity derived from designed sequences (Koehl-Levitt, 1999)"	10535955	"Koehl, P. and Levitt, M."	"Structure-based conformational preferences of amino acidsJ Proc Natl Acad Sci U S A. 96, 12524-12529 (1999)"	"Proc Natl Acad Sci U S A. 96, 12524-12529 (1999)* (Pro missing)"
KOEP990102	"Beta-sheet propensity derived from designed sequences (Koehl-Levitt, 1999)"	10535955	"Koehl, P. and Levitt, M."	"Structure-based conformational preferences of amino acidsJ Proc Natl Acad Sci U S A. 96, 12524-12529 (1999)"	"Proc Natl Acad Sci U S A. 96, 12524-12529 (1999)* (Pro!)"
CEDJ970101	"Composition of amino acids in extracellular proteins (percent) (Cedano et al., 1997)"	9067612	"Cedano, J., Aloy, P., Perez-Pons, J.A. and Querol, E."	"Relation between amino acid composition and cellular location of proteinsJ J Mol Biol. 266, 594-600 (1997)"	"J Mol Biol. 266, 594-600 (1997)"
CEDJ970102	"Composition of amino acids in anchored proteins (percent) (Cedano et al., 1997)"	9067612	"Cedano, J., Aloy, P., Perez-Pons, J.A. and Querol, E."	"Relation between amino acid composition and cellular location of proteinsJ J Mol Biol. 266, 594-600 (1997)"	"J Mol Biol. 266, 594-600 (1997)"
CEDJ970103	"Composition of amino acids in membrane proteins (percent) (Cedano et al., 1997)"	9067612	"Cedano, J., Aloy, P., Perez-Pons, J.A. and Querol, E."	"Relation between amino acid composition and cellular location of proteinsJ J Mol Biol. 266, 594-600 (1997)"	"J Mol Biol. 266, 594-600 (1997)"
CEDJ970104	"Composition of amino acids in intracellular proteins (percent) (Cedano et al., 1997)"	9067612	"Cedano, J., Aloy, P., Perez-Pons, J.A. and Querol, E."	"Relation between amino acid composition and cellular location of proteinsJ J Mol Biol. 266, 594-600 (1997)"	"J Mol Biol. 266, 594-600 (1997)"
CEDJ970105	"Composition of amino acids in nuclear proteins (percent) (Cedano et al., 1997)"	9067612	"Cedano, J., Aloy, P., Perez-Pons, J.A. and Querol, E."	"Relation between amino acid composition and cellular location of proteinsJ J Mol Biol. 266, 594-600 (1997)"	"J Mol Biol. 266, 594-600 (1997)"
FUKS010101	"Surface composition of amino acids in intracellular proteins of thermophiles (percent) (Fukuchi-Nishikawa, 2001)"	11399062	"Fukuchi, S. and Nishikawa, K."	"Protein surface amino acid compositions distinctively differ between thermophilic and mesophilic bacteriaJ J Mol Biol. 309, 835-843 (2001)"	"J Mol Biol. 309, 835-843 (2001)"
FUKS010102	"Surface composition of amino acids in intracellular proteins of mesophiles (percent) (Fukuchi-Nishikawa, 2001)"	11399062	"Fukuchi, S. and Nishikawa, K."	"Protein surface amino acid compositions distinctively differ between thermophilic and mesophilic bacteriaJ J Mol Biol. 309, 835-843 (2001)"	"J Mol Biol. 309, 835-843 (2001)"
FUKS010103	"Surface composition of amino acids in extracellular proteins of mesophiles (percent) (Fukuchi-Nishikawa, 2001)"	11399062	"Fukuchi, S. and Nishikawa, K."	"Protein surface amino acid compositions distinctively differ between thermophilic and mesophilic bacteriaJ J Mol Biol. 309, 835-843 (2001)"	"J Mol Biol. 309, 835-843 (2001)"
FUKS010104	"Surface composition of amino acids in nuclear proteins (percent) (Fukuchi-Nishikawa, 2001)"	11399062	"Fukuchi, S. and Nishikawa, K."	"Protein surface amino acid compositions distinctively differ between thermophilic and mesophilic bacteriaJ J Mol Biol. 309, 835-843 (2001)"	"J Mol Biol. 309, 835-843 (2001)"
FUKS010105	"Interior composition of amino acids in intracellular proteins of thermophiles (percent) (Fukuchi-Nishikawa, 2001)"	11399062	"Fukuchi, S. and Nishikawa, K."	"Protein surface amino acid compositions distinctively differ between thermophilic and mesophilic bacteriaJ J Mol Biol. 309, 835-843 (2001)"	"J Mol Biol. 309, 835-843 (2001)"
FUKS010106	"Interior composition of amino acids in intracellular proteins of mesophiles (percent) (Fukuchi-Nishikawa, 2001)"	11399062	"Fukuchi, S. and Nishikawa, K."	"Protein surface amino acid compositions distinctively differ between thermophilic and mesophilic bacteriaJ J Mol Biol. 309, 835-843 (2001)"	"J Mol Biol. 309, 835-843 (2001)"
FUKS010107	"Interior composition of amino acids in extracellular proteins of mesophiles (percent) (Fukuchi-Nishikawa, 2001)"	11399062	"Fukuchi, S. and Nishikawa, K."	"Protein surface amino acid compositions distinctively differ between thermophilic and mesophilic bacteriaJ J Mol Biol. 309, 835-843 (2001)"	"J Mol Biol. 309, 835-843 (2001)"
FUKS010108	"Interior composition of amino acids in nuclear proteins (percent) (Fukuchi-Nishikawa, 2001)"	11399062	"Fukuchi, S. and Nishikawa, K."	"Protein surface amino acid compositions distinctively differ between thermophilic and mesophilic bacteriaJ J Mol Biol. 309, 835-843 (2001)"	"J Mol Biol. 309, 835-843 (2001)"
FUKS010109	"Entire chain composition of amino acids in intracellular proteins of thermophiles (percent) (Fukuchi-Nishikawa, 2001)"	11399062	"Fukuchi, S. and Nishikawa, K."	"Protein surface amino acid compositions distinctively differ between thermophilic and mesophilic bacteriaJ J Mol Biol. 309, 835-843 (2001)"	"J Mol Biol. 309, 835-843 (2001)"
FUKS010110	"Entire chain composition of amino acids in intracellular proteins of mesophiles (percent) (Fukuchi-Nishikawa, 2001)"	11399062	"Fukuchi, S. and Nishikawa, K."	"Protein surface amino acid compositions distinctively differ between thermophilic and mesophilic bacteriaJ J Mol Biol. 309, 835-843 (2001)"	"J Mol Biol. 309, 835-843 (2001)"
FUKS010111	"Entire chain composition of amino acids in extracellular proteins of mesophiles (percent) (Fukuchi-Nishikawa, 2001)"	11399062	"Fukuchi, S. and Nishikawa, K."	"Protein surface amino acid compositions distinctively differ between thermophilic and mesophilic bacteriaJ J Mol Biol. 309, 835-843 (2001)"	"J Mol Biol. 309, 835-843 (2001)"
FUKS010112	"Entire chain compositino of amino acids in nuclear proteins (percent) (Fukuchi-Nishikawa, 2001)"	11399062	"Fukuchi, S. and Nishikawa, K."	"Protein surface amino acid compositions distinctively differ between thermophilic and mesophilic bacteriaJ J Mol Biol. 309, 835-843 (2001)"	"J Mol Biol. 309, 835-843 (2001)"
AVBF000101	"Screening coefficients gamma, local (Avbelj, 2000)"	10903873	"Avbelj, F."	"Amino acid conformational preferences and solvation of polar backbone atoms in peptides and proteinsJ J Mol Biol. 300, 1335-1359 (2000)"	"J Mol Biol. 300, 1335-1359 (2000)* (Pro missing)"
AVBF000102	"Screening coefficients gamma, non-local (Avbelj, 2000)"	10903873	"Avbelj, F."	"Amino acid conformational preferences and solvation of polar backbone atoms in peptides and proteinsJ J Mol Biol. 300, 1335-1359 (2000)"	"J Mol Biol. 300, 1335-1359 (2000)* (Pro missing)"
AVBF000103	"Slopes tripeptide, FDPB VFF neutral (Avbelj, 2000)"	10903873	"Avbelj, F."	"Amino acid conformational preferences and solvation of polar backbone atoms in peptides and proteinsJ J Mol Biol. 300, 1335-1359 (2000)"	"J Mol Biol. 300, 1335-1359 (2000)* (Pro missing)"
AVBF000104	"Slopes tripeptides, LD VFF neutral (Avbelj, 2000)"	10903873	"Avbelj, F."	"Amino acid conformational preferences and solvation of polar backbone atoms in peptides and proteinsJ J Mol Biol. 300, 1335-1359 (2000)"	"J Mol Biol. 300, 1335-1359 (2000)* (Pro missing)"
AVBF000105	"Slopes tripeptide, FDPB VFF noside (Avbelj, 2000)"	10903873	"Avbelj, F."	"Amino acid conformational preferences and solvation of polar backbone atoms in peptides and proteinsJ J Mol Biol. 300, 1335-1359 (2000)"	"J Mol Biol. 300, 1335-1359 (2000)* (Pro missing)"
AVBF000106	"Slopes tripeptide FDPB VFF all (Avbelj, 2000)"	10903873	"Avbelj, F."	"Amino acid conformational preferences and solvation of polar backbone atoms in peptides and proteinsJ J Mol Biol. 300, 1335-1359 (2000)"	"J Mol Biol. 300, 1335-1359 (2000)* (Pro missing)"
AVBF000107	"Slopes tripeptide FDPB PARSE neutral (Avbelj, 2000)"	10903873	"Avbelj, F."	"Amino acid conformational preferences and solvation of polar backbone atoms in peptides and proteinsJ J Mol Biol. 300, 1335-1359 (2000)"	"J Mol Biol. 300, 1335-1359 (2000)* (Pro missing)"
AVBF000108	"Slopes dekapeptide, FDPB VFF neutral (Avbelj, 2000)"	10903873	"Avbelj, F."	"Amino acid conformational preferences and solvation of polar backbone atoms in peptides and proteinsJ J Mol Biol. 300, 1335-1359 (2000)"	"J Mol Biol. 300, 1335-1359 (2000)* (Pro missing)"
AVBF000109	"Slopes proteins, FDPB VFF neutral (Avbelj, 2000)"	10903873	"Avbelj, F."	"Amino acid conformational preferences and solvation of polar backbone atoms in peptides and proteinsJ J Mol Biol. 300, 1335-1359 (2000)"	"J Mol Biol. 300, 1335-1359 (2000)* (Pro missing)"
YANJ020101	"Side-chain conformation by gaussian evolutionary method (Yang et al., 2002)"	12142444	"Yang, J.M., Tsai, C.H., Hwang, M.J., Tsai, H.K., Hwang, J.K. and Kao, C.Y."	"GEM: a Gaussian Evolutionary Method for predicting protein side-chain conformationsJ Protein Sci. 11, 1897-1907 (2002)"	"Protein Sci. 11, 1897-1907 (2002)* (Gly Ala missing)"
MITS020101	"Amphiphilicity index (Mitaku et al., 2002)"	12016058	"Mitaku, S., Hirokawa, T. and Tsuji, T."	"Amphiphilicity index of polar amino acids as an aid in the characterization of amino acid preference at membrane-water interfacesJ Bioinformatics. 18, 608-616 (2002)"	"Bioinformatics. 18, 608-616 (2002)"
TSAJ990101	"Volumes including the crystallographic waters using the ProtOr (Tsai et al., 1999)"	10388571	"Tsai, J., Taylor, R., Chothia, C. and Gerstein, M."	"The packing density in proteins: standard radii and volumesJ J Mol Biol. 290, 253-266 (1999)"	"J Mol Biol. 290, 253-266 (1999)* (Cyh 112.8)"
TSAJ990102	"Volumes not including the crystallographic waters using the ProtOr (Tsai et al., 1999)"	10388571	"Tsai, J., Taylor, R., Chothia, C. and Gerstein, M."	"The packing density in proteins: standard radii and volumesJ J Mol Biol. 290, 253-266 (1999)"	"J Mol Biol. 290, 253-266 (1999)* (Cyh 113.7)"
COSI940101	"Electron-ion interaction potential values (Cosic, 1994)"	7851912	"Cosic, I."	"Macromolecular bioactivity: is it resonant interaction between macromolecules?--Theory and applicationsJ IEEE Trans Biomed Eng. 41, 1101-1114 (1994)"	"IEEE Trans Biomed Eng. 41, 1101-1114 (1994)* (values are cited from Protein Eng. 15:193-203)"
PONP930101	"Hydrophobicity scales (Ponnuswamy, 1993)"	8419986	"Ponnuswamy, P.K."	"Hydrophobic characteristics of folded proteinsJ Prog Biophys Mol Biol. 59, 57-103 (1993)"	"Prog Biophys Mol Biol. 59, 57-103 (1993)"
WILM950101	"Hydrophobicity coefficient in RP-HPLC, C18 with 0.1%TFA/MeCN/H2O (Wilce et al. 1995)"	0	"Wilce, M.C., Aguilar, M.I. and Hearn, M.T."	"Physicochemical basis of amino acid hydrophobicity scales: evaluation of four new scales of amino acid hydrophobicity coefficients derived from RP-HPLC of peptidesJ Anal Chem. 67, 1210-1219 (1995)"	"Anal Chem. 67, 1210-1219 (1995)"
WILM950102	"Hydrophobicity coefficient in RP-HPLC, C8 with 0.1%TFA/MeCN/H2O (Wilce et al. 1995)"	0	"Wilce, M.C., Aguilar, M.I. and Hearn, M.T."	"Physicochemical basis of amino acid hydrophobicity scales: evaluation of four new scales of amino acid hydrophobicity coefficients derived from RP-HPLC of peptidesJ Anal Chem. 67, 1210-1219 (1995)"	"Anal Chem. 67, 1210-1219 (1995)"
WILM950103	"Hydrophobicity coefficient in RP-HPLC, C4 with 0.1%TFA/MeCN/H2O (Wilce et al. 1995)"	0	"Wilce, M.C., Aguilar, M.I. and Hearn, M.T."	"Physicochemical basis of amino acid hydrophobicity scales: evaluation of four new scales of amino acid hydrophobicity coefficients derived from RP-HPLC of peptidesJ Anal Chem. 67, 1210-1219 (1995)"	"Anal Chem. 67, 1210-1219 (1995)"
WILM950104	"Hydrophobicity coefficient in RP-HPLC, C18 with 0.1%TFA/2-PrOH/MeCN/H2O (Wilce et al. 1995)"	0	"Wilce, M.C., Aguilar, M.I. and Hearn, M.T."	"Physicochemical basis of amino acid hydrophobicity scales: evaluation of four new scales of amino acid hydrophobicity coefficients derived from RP-HPLC of peptidesJ Anal Chem. 67, 1210-1219 (1995)"	"Anal Chem. 67, 1210-1219 (1995)"
KUHL950101	"Hydrophilicity scale (Kuhn et al., 1995)"	8749849	"Kuhn, L.A., Swanson, C.A., Pique, M.E., Tainer, J.A. and Getzoff, E.D."	"Atomic and residue hydrophilicity in the context of folded protein structuresJ Proteins. 23, 536-547 (1995)"	"Proteins. 23, 536-547 (1995)"
GUOD860101	"Retention coefficient at pH 2 (Guo et al., 1986)"	0	"Guo, D., Mant, C.T., Taneja, A.K., Parker, J.M. and Hodges, R.S."	"Prediction of peptide retention times in reversed-phase high-performance liquid chromatography; I. determination of retention coefficients of amino acid residues of model synthetic peptidesJ J Chromatogr. 359, 499-517 (1986)"	"J Chromatogr. 359, 499-517 (1986)"
JURD980101	"Modified Kyte-Doolittle hydrophobicity scale (Juretic et al., 1998)"	0	"Juretic, D., Lucic, B., Zucic, D. and Trinajstic, N."	"Protein transmembrane structure: recognition and prediction by using hydrophobicity scales through preference functionsJ Theoretical and Computational Chemistry, 5, 405-445 (1998)"	"Theoretical and Computational Chemistry, 5, 405-445 (1998)"