LOCUS       NC_008230               3661 bp    DNA     circular BCT 08-DEC-2007
DEFINITION  Helicobacter acinonychis str. Sheeba plasmid pHac1, complete
            sequence.
ACCESSION   NC_008230
VERSION     NC_008230.1  GI:109948253
PROJECT     GenomeProject:17251
DBLINK      Project:17251
KEYWORDS    complete genome.
SOURCE      Helicobacter acinonychis str. Sheeba
  ORGANISM  Helicobacter acinonychis str. Sheeba
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Helicobacteraceae; Helicobacter.
REFERENCE   1  (bases 1 to 3661)
  AUTHORS   Eppinger,M., Baar,C., Linz,B., Raddatz,G., Lanz,C., Keller,H.,
            Morelli,G., Gressmann,H., Achtman,M. and Schuster,S.C.
  TITLE     Who ate whom? Adaptive Helicobacter genomic changes that
            accompanied a host jump from early humans to large felines
  JOURNAL   PLoS Genet. 2 (7), E120 (2006)
   PUBMED   16789826
REFERENCE   2  (bases 1 to 3661)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-JUL-2006) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 3661)
  AUTHORS   Schuster,S.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-MAR-2006) Schuster S.C., Department of Biochemistry
            and Molecular Biology, Center for Comparative Genomics and
            Bioinformatics Center for Infectious Disease Dynamics, 310 Wartik
            Building, Penn State University, University Park, PA 16802, USA
            Phone +1 814 863-9278, FAX +1 814 863-6699
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AM260523.
            Clone requests: scs@bx.psu.edu.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3661
                     /organism="Helicobacter acinonychis str. Sheeba"
                     /mol_type="genomic DNA"
                     /strain="Sheeba"
                     /db_xref="taxon:382638"
                     /plasmid="pHac1"
     gene            234..515
                     /locus_tag="pHac1_1"
                     /db_xref="GeneID:4177775"
     CDS             234..515
                     /locus_tag="pHac1_1"
                     /inference="similar to DNA sequence:INSDC:AAD06405.1"
                     /note="similar to JHP0828;
                     hypothetical protein"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_665481.1"
                     /db_xref="GI:109948254"
                     /db_xref="GeneID:4177775"
                     /translation="MLKNVEMGANFYKKLGKLEKQLAKYQSKVLEIKIQIKEIKKQYS
                     QAKKDENLASKYIPNDELKKDLLDIDNPNTTENFKPKNASEIWQFALNS"
     gene            524..793
                     /locus_tag="pHac1_2"
                     /db_xref="GeneID:4177776"
     CDS             524..793
                     /locus_tag="pHac1_2"
                     /inference="similar to DNA sequence:INSDC:AAD06402.1"
                     /note="similar to JHP0825;
                     hypothetical protein"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_665482.1"
                     /db_xref="GI:109948255"
                     /db_xref="GeneID:4177776"
                     /translation="MLEIELKKKFTKDLKKYILNQKIELEVFDLVVENLRNQIPLDKR
                     FKDHALSGTYKGCRECHIKPDVLLVYRVKDNVLTLVRLGSHSELF"
     gene            complement(1041..1151)
                     /locus_tag="pHac1_3"
                     /db_xref="GeneID:4177777"
     CDS             complement(1041..1151)
                     /locus_tag="pHac1_3"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_665483.1"
                     /db_xref="GI:109948256"
                     /db_xref="GeneID:4177777"
                     /translation="MRFCLCSLTLRLLVFACQQTIGLKPLICSLTLARRF"
     gene            complement(1329..1538)
                     /locus_tag="pHac1_4"
                     /db_xref="GeneID:4177778"
     CDS             complement(1329..1538)
                     /locus_tag="pHac1_4"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_665484.1"
                     /db_xref="GI:109948257"
                     /db_xref="GeneID:4177778"
                     /translation="MVTINFLSSLIVGKKFPYRWQEVPLSLARSSLIVGKKFPFIHFH
                     PKMRNHTASLFRLFQPPIPHARACE"
     gene            complement(1568..1684)
                     /locus_tag="pHac1_5"
                     /db_xref="GeneID:4177779"
     CDS             complement(1568..1684)
                     /locus_tag="pHac1_5"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_665485.1"
                     /db_xref="GI:109948258"
                     /db_xref="GeneID:4177779"
                     /translation="MVCLLTECYPLQTPNPLAFKANCSKFVNTRISNHVIPP"
     gene            1854..3476
                     /gene="repA"
                     /locus_tag="pHac1_6"
                     /db_xref="GeneID:4177780"
     CDS             1854..3476
                     /gene="repA"
                     /locus_tag="pHac1_6"
                     /inference="protein motif:InterPro:IPR000525"
                     /note="replication protein repA,InterPro; Initiator RepB
                     protein;
                     hypothetical protein"
                     /codon_start=1
                     /transl_table=11
                     /product="replication A protein"
                     /protein_id="YP_665486.1"
                     /db_xref="GI:109948259"
                     /db_xref="GeneID:4177780"
                     /translation="MPMNTNFEQLIKQELELRKLLEELDTLPQTPQIKLQKQKIQTYI
                     DKITPSILSGFNQKFKEITKNSPNEFEKETQEPTPLKESQTTITPCKDLVVTTPKDKT
                     YITYHNNANKVNLGKLSEREANLLFAIFQRLKDQGNTLIRFEPQDLKRMLNIDISNER
                     LSEVVIKLWDSIKTADFWKISETETSIIQENYMLFSRCKIELNKPSKDLKYLEIQLND
                     SYQYLLNNLGMGQYTSFNLLEFQRVRGKYAKTLYRLLKQYKSTGILSVEWSQFRELLD
                     IPKDYEMRNIDQKVLTPAIKELHKIYPFEHLSYKKERRSHDKRKVTHIDFYFEQLPKG
                     GTKKQKQADKQRTQRDIKLIAWDIKRQGIIKRSKETLGVREMDLKSLIGSLFENPNGT
                     ILKIENIAKEKNQFFMHVSYPNRKSEPQKLAVSDKRYALEFLYVSGGYTFKKDNLLQE
                     TFTHSIHPITNEPIKEFAKYIGKTINITNHNVDQCPDGISNCLKITNIVKLNDNQIQI
                     SLQDVDKPDKLLKPFIAKDEKHLKNWFKKYYR"
ORIGIN      
        1 atttacatta gcaaaaaagg gtgttttttc aagacacaaa aaaagggcag gataacactc
       61 aaaaagaaaa aaatgtgcac tttttaagtg ggggtgtctt acgcagacca ctagataagg
      121 gggttacagc gttccttaaa aaaaacttaa aaatgagacc ttttttttgg ctcttttggt
      181 aaaaaacttg gatataatgg ggttgttatg attgattgag ttaaggagat aagatgttaa
      241 aaaatgtaga aatgggggct aatttttata aaaagcttgg caaattagaa aaacaattag
      301 ctaaatatca aagtaaagtt ttagaaatta aaatacaaat aaaagagatt aaaaagcaat
      361 attctcaagc taagaaagat gagaatttag ctagtaaata tattcctaat gatgagttaa
      421 aaaaagattt attagatatt gataatccta atacgactga aaactttaag cctaaaaatg
      481 ctagtgaaat ttggcaattc gctcttaatt cttaggggat tgaatgctag agattgagtt
      541 aaaaaagaaa ttcactaaag atttaaaaaa gtatatttta aatcaaaaaa ttgagttaga
      601 agtttttgac ttagtggttg aaaatttaag aaatcaaatt ccattggata aaagatttaa
      661 agaccacgct ttaagtggaa catacaaagg ctgtagagag tgccacatta aacctgatgt
      721 tttgcttgtg tatagagtga aagataatgt tttgacctta gtcaggcttg gcagtcatag
      781 cgagttgttt tagacaaatt tctttctaaa atcgcctaga atgaattttc aatcctaatc
      841 caacctaatc atcgtttttt aagttaagcg atgaaatagg gctattttta gctcattatt
      901 ggggtatttt gtttttagtt gaaagttagc tttcaaaatt caaaacaact tcatttccct
      961 tttagtcgct aaccatttag ccaatctaac tagtttagca tctaaaagcg catatgactt
     1021 cggcttccaa tccaacccta ctaaaaccgc ctagcgagcg ttagcgagca aataagcggt
     1081 tttagaccga ttgtttgctg acaagcaaac accaacaagc gaagcgttag cgagcataga
     1141 caaaagcgca tcgcagtttg aaagcgtagg cgttagccga agctgttttg cgttagcaaa
     1201 tcaaacaaga tagcgcaaac ctggcgttag actaaaaaac ccctaaaaac taaaactcca
     1261 aaattatgta gcgcgtcatg cgcgttgttt ttttactttt ttaaatagca tgctgttttt
     1321 tacatgtttt actcgcatgc gcgcgcgtga gggattgggg gttggaagag cctaaataac
     1381 gaagctgtat ggtttctcat ttttgggtga aaatgaataa aggggaactt cttgccaacg
     1441 ataagggaac ttcttgccaa cgataaggga acttcttgcc aacgataagg gaacttcttg
     1501 ccaacgataa gggaacttaa aaagttaata gttaccatat tagcaatttt ttagctataa
     1561 taacagccta aggcggtata acatggttgc taatcctagt gttaacaaat ttggagcaat
     1621 tagctttaaa agctagtggg ttgggagttt gtagcgggta gcactccgtt aggaggcaca
     1681 ccatgaaagc atttttaata gtagtgattt tagtggtaat cttaacacag ccacttatat
     1741 taaaaaaaac cttagcgttt taataatcct tataagtccg gcaagacttt ttaagggttt
     1801 cactcctatt tattatatcg tcttttgaaa aataagcatt aaaaggcggt taaatgccca
     1861 tgaatacgaa ttttgaacag cttataaaac aagaattgga attacgaaaa ttattagaag
     1921 aattagacac actcccacaa accccacaaa ttaaactaca aaaacaaaaa atacaaactt
     1981 acatagacaa gataactcca agtattttga gcggttttaa tcaaaaattc aaagaaatta
     2041 caaaaaattc accaaatgag tttgaaaaag aaacccaaga acccacacca ctcaaagaat
     2101 cgcaaaccac gatcacacca tgcaaagatt tagtggttac aacccctaaa gataaaacct
     2161 atatcaccta ccacaacaac gctaataagg ttaatctagg gaaattgagc gaaagggaag
     2221 ccaatctttt attcgctatt tttcaaaggc ttaaagatca agggaatacc cttattcgtt
     2281 ttgaaccgca agatttaaag cgcatgctaa acatagatat ttctaacgag cgcttatcag
     2341 aagttgttat taagctatgg gatagcatta aaaccgctga tttttggaaa attagcgaaa
     2401 cagaaacttc aatcattcaa gaaaattaca tgctttttag tcggtgtaaa attgaattga
     2461 ataaacctag taaagattta aagtatttag aaatccaact caatgatagc tatcaatact
     2521 tgctcaacaa tctaggaatg ggtcaataca cttctttcaa tctcttagaa tttcaaagag
     2581 tgaggggtaa atacgctaaa acgctctatc gcttgctcaa gcaatacaaa agcacaggga
     2641 ttttaagcgt ggaatggtct caattcaggg agcttttaga cattccaaaa gactatgaaa
     2701 tgcgaaacat cgatcaaaaa gtcttaactc cagccattaa agaactccat aaaatctacc
     2761 cttttgaaca cttgagctac aagaaagaac gccgaagcca tgacaagcgc aaggtaaccc
     2821 acattgattt ttactttgaa caattgccta aaggcggaac caagaaacaa aaacaagcgg
     2881 acaagcaacg cactcaaaga gatattaagc tcatagcgtg ggacattaaa agacaaggca
     2941 ttatcaaacg ctctaaagaa accctaggag ttagggaaat ggatttgaaa agtttgatag
     3001 gctctctttt tgaaaaccct aatgggacta ttttaaaaat tgaaaacatc gctaaagaaa
     3061 aaaaccaatt cttcatgcat gtttcttacc ctaacagaaa aagtgaaccg caaaaattgg
     3121 ctgtatctga caaacgatac gctttagaat ttttgtatgt cagtggagga tacaccttca
     3181 aaaaagacaa tttgttacaa gaaaccttta cgcatagcat ccaccctatc actaacgaac
     3241 ccatcaaaga gtttgcaaaa tacataggca aaacgatcaa catcactaac cacaatgtag
     3301 atcaatgccc tgatgggata tcaaactgct taaaaatcac taacattgtc aaattgaatg
     3361 acaatcaaat ccaaatctct ctccaagatg tggataaacc tgacaaactc ctaaaacctt
     3421 tcatcgctaa agatgaaaaa catttgaaga attggtttaa gaaatattac cgctgaaaat
     3481 gtttgtgaaa aacgcttgag cgatcaatct aatgatcaaa actaaactac gaacaaccta
     3541 tttgaaagtt taggaaaaaa attcttcaca tcttagactg ctaactaaaa aacttcaatt
     3601 ttttctttct aactaacttc tggcaaaaaa cacgatccaa aaaaggggca aatttcacac
     3661 c
//