No. words: 1965; after pruning: 1913


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    
Merge:(0)    0    0.0 4.4 (1,1:771)  198  0.49 0.00 0.00  BF474333Tu01P067C05P067C111F1_090.ab1      253   456 (0)  C BF474333Tu01P067C05P067C111R1_011.ab1   (0)   520   317 *

Pass: 1
#reads  #contigs (not counting singlets)
    1      2
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 3
             Gap  Score    
Fail: (1)  208  -27.7 6.9 (2,1:44)  314  0.31 0.00 0.00  BF474333Tu01P067C05P067C111R1_011.ab1      203   520 (0)  C BF474333Tu01P067C05P067C111F1_011.ab1   (0)   526   209 *
  Worst pair: offset 3 
LLR breakdown: discreps: -36.6 (<20 part: -2.2 (#=8), >20:-34.4 (#=8); in HQ: -36.6, out HQ 0.0), match: 8.8  total: -27.8  345  1.74 2.23 0.00  BF474333Tu01P067C05P067C111F1_090.ab1       54   456 (0)    BF474333Tu01P067C05P067C111F1_011.ab1        1   412 (114) *
Merge:(0)    0   -0.5 3.9 (2,1:864)  336  1.62 0.27 0.54  BF474333Tu01P067C05P067C111R1_011.ab1        1   370 (150)    BF474333Tu01P067C05P067C111R1_090.ab1       95   463 (0) *
Fail: (1)  208  -27.7 3.0 (3,1:44)  159  0.00 0.60 0.60  BF474333Tu01P067C05P067C111R1_090.ab1      296   463 (0)  C BF474333Tu01P067C05P067C111F1_011.ab1   (0)   526   359 *
  Worst pair: offset 3 
LLR breakdown: discreps: -36.6 (<20 part: -2.2 (#=8), >20:-34.4 (#=8); in HQ: -36.6, out HQ 0.0), match: 8.8  total: -27.8  345  1.74 2.23 0.00  BF474333Tu01P067C05P067C111F1_090.ab1       54   456 (0)    BF474333Tu01P067C05P067C111F1_011.ab1        1   412 (114) *

Pass: 3
#reads  #contigs (not counting singlets)
    1      1
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.5       1        0
-27.7       0        2

Gap   # merges  # failures
 size
 0       1        0
208       0        2

Offset
  0       5 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    1      1
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    1
    3    1

Chimera merges: 


Contig 2:  278 nodes

 139 str. conn. components

Path
    1    BF474333Tu01P067C05P067C111R1_090.ab1     1 
  310    BF474333Tu01P067C05P067C111R1_011.ab1   217 
  318    BF474333Tu01P067C05P067C111R1_090.ab1   318 
  326    BF474333Tu01P067C05P067C111R1_011.ab1   233 
  342    BF474333Tu01P067C05P067C111R1_090.ab1   342 
  346    BF474333Tu01P067C05P067C111R1_011.ab1   253 
  430  C BF474333Tu01P067C05P067C111F1_090.ab1   436 
  434    BF474333Tu01P067C05P067C111R1_011.ab1   341 
  450  C BF474333Tu01P067C05P067C111F1_090.ab1   416 
  458    BF474333Tu01P067C05P067C111R1_011.ab1   365 
  482  C BF474333Tu01P067C05P067C111F1_090.ab1   384 
  486    BF474333Tu01P067C05P067C111R1_011.ab1   393 
  494  C BF474333Tu01P067C05P067C111F1_090.ab1   372 
Contig length: old 865, new 865

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    BF474333Tu01P067C05P067C111F1_011.ab1     1 
Contig length: old 526, new 526

Contig length: old 865, new 865
New start: 0