==>runtrx start: date:  Mon Feb 16 00:58:32 EST 2009 ( swift17.pppl.gov )
runtrx: tok.yy = D3D.02
==========(runtrx)======================
date:  Mon Feb 16 00:58:32 EST 2009 ( swift17.pppl.gov )
args:  134372N10 pre
==========(runtrx)======================
==========(runtrx)======================
==========TRANSP preprocessing==========
date:  Mon Feb 16 00:58:32 EST 2009 ( swift17.pppl.gov )
==========check for 134372N10_mdsmark.sh===
==========(runtrx)======================
==========TRDAT execution===============
date:  Mon Feb 16 00:58:32 EST 2009 ( swift17.pppl.gov )
    TRDAT Default  vn 2.01 18-1-2002 
 %TRDAT:  detected ELVIS_SERVER = "/p/transpgrid/qshare/ElVis/".
File /p/transpgrid/qshare/ElVis/ already exists, renamed to /p/transpgrid/qshare/ElVis/~
  CTOKNM : Cdir = /local/pshr0009/transp_compute/D3D/134372N10/
 % DIRECTORY IS /local/pshr0009/transp_compute/D3D/134372N10/; TOKAMAK ID SET TO D3D 
 %mds_setup:  setting MDSplus server to:  _ATLAS.GAT.COM
 %mds_setup:  server set OK.
 %mds_setup:  MDSplus opening tree:  TRANSP 1343721410
 %mds_setup:  MDSplus tree open status:  265388041
  -----------> entering UF0GET.
 % UF0DRD WARNING:  DIMENSIONALITY OF INPUT FILE = 2
 %UF0GET: SCALAR NBEAM = # OF BEAMS NOT FOUND IN NB2 DATA FILE
  namelist NBEAM used:    6
 % UF0DRD WARNING:  DIMENSIONALITY OF INPUT FILE = 3
  %OK: BTOR_CCW not found, using namelist:  nlbccw =  F
  %OK: ITOR_CCW not found, using namelist:  nljccw =  T
  %UF0GET -- finished.
  
  %datchk: reset MRSTRT to  -5
  %datchk: restart records once every  -5  minutes.
  Note: nlfsp_server FALSE => nlfsp_species FALSE.
  Note: nlfsp_server FALSE => nlfsp_psirz FALSE.
 DATCHK: CHECKING ARRAY DIMENSIONS, SWITCHES, ETC
  %DATCHK -- UP-DOWN ASYMMETRY DETECTED
  %DATCHK: NYXINV incremented to be odd: 101 81
  %DATCHK: no Lower Hybrid, NLLH=F, nantlh=0 set.
  TIDXSW defaulted: value of 0.05 assigned.
  %DATCKICH -- NLICRF=F so force NICHA=0
 %DATCKA -- CHECKING NON-DEFAULT SPECIFICATIONS FOR AC FILE I/O
  GIVEN IN NAMELIST CHARACTER DATA ARRAYS "SELOUT" AND "SELAVG"
 %ASCXFIN -- AC FILE OPERATION COMPLETED SUCCESSFULLY.
 NLICRF=.FALSE., FRMINI set to 0.0!
  dummy trdatusub vsn trgdat_check called (OK).
  dummy trdatusub vsn trgdat_psload called (OK).
  *UTRCHK:  CHECKING TRDAT NAMELIST SPECIFICATIONS.

 *DDEFIN:  SET UP PHYSICS DATA FOR ANALYSIS:
  TIME RANGE IS TINIT= 4.0500E+00, FTIME= 4.7500E+00 SECONDS.

 SETSCD - SET SCALAR DATA FOR UPF
 SETTIM - SET UP TIMING INFORMATION FOR UPF

 *UF1GET:  PROCESSING "CUR":  plasma current amps    -------------------
 %CHKTIM:  DATA TIME RANGE  4.0500E+00 TO  4.7500E+00 SECONDS
          DOES NOT COVER THE ENTIRE ANALYSIS TIME RANGE (TINIT,FTIME).

 *UF1GET:  PROCESSING "RBZ":  [ext. B field] * R Tesla*cm    -----------
 %FIXUNS:  CONVERTING UFILE RBZ DATA UNITS, M.T       , TO Tesla*cm  
          >CONVERSION FACTOR:  * 100.000    
 %CHKTIM:  DATA TIME RANGE  4.0500E+00 TO  4.7500E+00 SECONDS
          DOES NOT COVER THE ENTIRE ANALYSIS TIME RANGE (TINIT,FTIME).

 *UF1GET:  PROCESSING "BDI":  beta diamagnetic      --------------------
 %CHKTIM:  DATA TIME RANGE  4.0500E+00 TO  4.7500E+00 SECONDS
          DOES NOT COVER THE ENTIRE ANALYSIS TIME RANGE (TINIT,FTIME).

 *UF1GET:  PROCESSING "DFL":  diamagnetic flux Webers    ---------------
 %CHKTIM:  DATA TIME RANGE  4.0500E+00 TO  4.7500E+00 SECONDS
          DOES NOT COVER THE ENTIRE ANALYSIS TIME RANGE (TINIT,FTIME).

 *UF1GET:  PROCESSING "GAS":  gas flow source #/sec    -----------------
 %CHKTIM:  DATA TIME RANGE  4.0500E+00 TO  4.7500E+00 SECONDS
          DOES NOT COVER THE ENTIRE ANALYSIS TIME RANGE (TINIT,FTIME).

 *UF1GET:  PROCESSING "L2B":  li/2 + beta(pol)      --------------------
 %CHKTIM:  DATA TIME RANGE  4.0500E+00 TO  4.7500E+00 SECONDS
          DOES NOT COVER THE ENTIRE ANALYSIS TIME RANGE (TINIT,FTIME).

 *UF1GET:  PROCESSING "NTX":  Neutron flux n/sec    --------------------

 *UF1GET:  PROCESSING "RCY":  recycling source #/sec    ----------------
 %CHKTIM:  DATA TIME RANGE  4.0500E+00 TO  4.7500E+00 SECONDS
          DOES NOT COVER THE ENTIRE ANALYSIS TIME RANGE (TINIT,FTIME).

 *UF1GET:  PROCESSING "VSF":  surface voltage volts    -----------------
 %CHKTIM:  DATA TIME RANGE  4.0500E+00 TO  4.7500E+00 SECONDS
          DOES NOT COVER THE ENTIRE ANALYSIS TIME RANGE (TINIT,FTIME).

 *UF3GET:  PROCESSING "MRY":  Moments boundary cm    -------------------
 %CHKTIM:  DATA TIME RANGE  4.0500E+00 TO  4.7500E+00 SECONDS
          DOES NOT COVER THE ENTIRE ANALYSIS TIME RANGE (TINIT,FTIME).
 Setmom: Interpolate 3-D MRY bdy moments data for UPF
 %SETMOM:  NMOM =  8

 *UF2GET:  PROCESSING "BOL":  Power radiated W/cm**3    ----------------
 _%UF2GET FALLBACK:  1D UFILE INPUT => TIME SERIES F(T) DATA
           %units check required: fallback to time series.
 ?FIXUNS:  UFILE BOL TIMEBASE UNITS LABEL "          " NOT RECOGNIZED
 ?FIXUNS:  UFILE BOL DATA UNITS LABEL "W/CM**3   " NOT RECOGNIZED
  ?UF2GET:  UFILE UNITS ERROR \TRANSP::top.inputs:BOL
           => retry with fallback to timeslice option.

 *UF2GET:  PROCESSING "BOL":  Power radiated W/cm**3    ----------------
 _%UF2GET FALLBACK:  1D UFILE INPUT => TIME INVARIANT PROFILE
 %SETDAT2-- X axis is normalized flux, not modified, npts=101

 *UF2GET:  PROCESSING "NER":  electron density n/cm**3    --------------
 _%UF2GET FALLBACK:  1D UFILE INPUT => TIME INVARIANT PROFILE
 %SETDAT2-- X axis is normalized flux, not modified, npts=119

 *UF2GET:  PROCESSING "OMG":  plasma rotation rad/sec    ---------------
 _%UF2GET FALLBACK:  1D UFILE INPUT => TIME INVARIANT PROFILE
 %SETDAT2-- X axis is normalized flux, not modified, npts=349

 *UF2GET:  PROCESSING "QPR":  q profile      ---------------------------
 %UF2GET -- INPUT UFILE AXES OUT OF ORDER, WILL SWAP:
  1ST DIMENSION = "          "; 2ND DIMENSION = "seconds   "
 %CHKTIM:  DATA TIME RANGE  4.0500E+00 TO  4.7500E+00 SECONDS
          DOES NOT COVER THE ENTIRE ANALYSIS TIME RANGE (TINIT,FTIME).
 %SETDAT2-- X axis is normalized flux, not modified, npts=101

 *UF2GET:  PROCESSING "TER":  electron temperature eV    ---------------
 _%UF2GET FALLBACK:  1D UFILE INPUT => TIME INVARIANT PROFILE
 %FIXUNS:  CONVERTING UFILE TER DATA UNITS, KEV       , TO eV        
          >CONVERSION FACTOR:  * 1000.00    
 %SETDAT2-- X axis is normalized flux, not modified, npts=206

 *UF2GET:  PROCESSING "TI2":  ion temperature eV    --------------------
 _%UF2GET FALLBACK:  1D UFILE INPUT => TIME INVARIANT PROFILE
 %FIXUNS:  CONVERTING UFILE TI2 DATA UNITS, KEV       , TO eV        
          >CONVERSION FACTOR:  * 1000.00    
 %SETDAT2-- X axis is normalized flux, not modified, npts=119

 *UF2GET:  PROCESSING "ZF2":  Zeff profile      ------------------------
 _%UF2GET FALLBACK:  1D UFILE INPUT => TIME INVARIANT PROFILE
 %SETDAT2-- X axis is normalized flux, not modified, npts= 92

 *DDEFIN: Set Plasma Heating parameters :-    ==========================
  
  -> entering setnbi (neutral beam powers, voltages, etc.)
 SETNBI - SET UP NEUTRAL BEAM DATA FOR UPF

 *UF2GET:  PROCESSING "NB2":  beam heating data      -------------------
 %SETNBI- BEAM FULL ENERGY FRACTIONS SET BY NBI FILE **
 %SETNBI- BEAM HALF ENERGY FRACTIONS SET BY NBI FILE **
  %setnbi: NBI on/off times taken from data.
 %NB_ONOFF: NBI on/off times (s):   4.0500E+00  1.0000E+01
  
  -> entering setrfp (ICRF powers)
  (no ICRF power detected)
  
  -> entering setlhp (Lower Hybrid powers)
  (no Lower Hybrid Antenna Powers detected)
  
  -> entering setecp (ECH/ECCD powers)
 SETECP - SET UP ECRH POWER DATA FOR UPF

 *UF2GET:  PROCESSING "ECP":  ECRF antenna powers watts    -------------
  %ECH/ECCD on/off times taken from data.
 %EC_ONOFF: ECH on/off times (s):   4.0500E+00  1.0000E+01
  
  
  Zeff vs. (x,t) only:
    Zeff vs. (x,t) input data provided.
 %SETDFLT:  "DTG" INPUT DATA FILE NOT SPECIFIED
 ==>DEFAULT VALUE SUBSTITUTED, DTMAXG =  1.0000E-02
  %setmisc -- time dependent geometry timestep enabled (ZOOM is off).
 %SETDFLT:  "DTS" INPUT DATA FILE NOT SPECIFIED
 ==>DEFAULT VALUE SUBSTITUTED, DT_SOURCES =  1.0000E-02
  %setmisc -- time dependent source timestep enabled (ZOOM is off).
 %SETDFLT:  "DTX" INPUT DATA FILE NOT SPECIFIED
 ==>DEFAULT VALUE SUBSTITUTED, DT_OUTPUT =  1.0000E-02
  %setmisc -- time dependent output timestep enabled (ZOOM is off).
  --------------------------------------------------
  %trdat_bdy_check -- checking plasma boundary data
  
  trdat_bdy_check: OK
  ...min(r_curvature/(Rmax-Rmin)) is:  6.99748958683280159E-2
  ...at time t= 4.0499999999999998  seconds.
  

 ------------> thermal ion ptcl balance summary:

  Hydrogen  (absent)                                         
  Deuterium NDEFINE=0 NMODEL=4 RC=NLRCYC GF=NLRCYC           
  Tritium   (absent)                                         
  Helium-3  (absent)                                         
  Helium-4  (absent)                                         
  Lithium-6 (absent)                                         

 Recycling fractions RFRAC are specified.

 ------------------------------------
  Fast ion summary:
  
  Beam species: D
  Fusion product species: (None)
  Minority RF species: (None)
 ------------------------------------
==========(runtrx TRDAT sts = 0)======
==>runtrx:  trdat execution successful
            will write to mdsplus later
==========LABEL execution===============
date:  Mon Feb 16 00:59:11 EST 2009 ( swift17.pppl.gov )
==>runtrx:  label execution successful
==========add TF.PLN to MDSplus ========
==========(runtrx)======================
date:  Mon Feb 16 00:59:12 EST 2009 ( swift17.pppl.gov )
 mds_conopn: option = 4 1343721410  TRANSP                  
  ...connecting to server:  _ATLAS.GAT.COM
 ...tcl("EDIT TRANSP/SHOT=1343721410")
 nid = 1
 open 134372N10TF.PLN                                                                           
  add_file:  1921  lines - 67
 tcl("WRITE")
 stat = 1
==========add PH.CDF to MDSplus ========
==========(runtrx)======================
date:  Mon Feb 16 00:59:17 EST 2009 ( swift17.pppl.gov )
==========(runtrx)======================
==========TRANSP link & load============
==========(runtrx)======================
date:  Mon Feb 16 00:59:17 EST 2009 ( swift17.pppl.gov )
--> copy_expert_for: standard expert source copied to: 134372N10ex.for
--> copy_expert_for: up-to-date expert object copied to: 134372N10ex.o
 **** uplink 134372N10tr nolib
check_xlibvars: setenv TRLIB_PATH (null)
make: `/p/transpgrid/transp_platform/RHEL4/path_64/obj/freeshare/port.o' is up to date.
make: `/p/transpgrid/transp_platform/RHEL4/path_64/obj/freeshare/blockd.o' is up to date.
make: `/local/pshr0009/transp_compute/D3D/134372N10/134372N10ex.o' is up to date.
make: `/p/transpgrid/transp_platform/RHEL4/path_64/obj/transp/subtransp.o' is up to date.
make: `/p/transpgrid/transp_platform/RHEL4/path_64/obj/freeshare/fspdata.o' is up to date.
csh -f /local/pshr0009/transp_compute/D3D/134372N10/134372N10tr.sh
csh/linkload detected:  f90 libraries requirement with C/C++ linkage
==>runtrx:  TRANSP link successful
==========(runtrx)======================
==========>runtrx normal exit<==========
date:  Mon Feb 16 00:59:28 EST 2009 ( swift17.pppl.gov )