The following is the content of file shape.ca.2-eqtl.txt

\-\-\-\-\-\-\-\-\-\-\-\-\-\-\-\-\-\-\-\-\-\-\-\-\-\-\-\-\-\-\-\-\-\-\-\-\-\-\-\-\-\-\-\-\-\-\-\-\-\-\-\-\-\-\-\-\-\-\--

\# 1129561995 -filetype Eqtl.out

\#

\# QTL Cartographer v. 1.15a, 25 Oct 00

\# This output file (shape.CA.2-EQTL.txt) was created by Eqtl\...

\#

\# It is 10:13:15 on Monday, 17 October 2005

\#

\#

\# The following is for hypothesis test 10 and Zmapqtl model 6

\#

\# Here is the data on the QTLS\...

\#

-t 14 is the number of traits

\#

\#

-k 0

\# for trait -named Trait-1 which is -number 1

\#

\# \# ..Chrom..Markr. .Position. .LOD Score. .Additive. .Dominance. .R2.
.TR2. .S.

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-2 which is -number 2

\#

\# \# ..Chrom..Markr. .Position. .LOD Score. .Additive. .Dominance. .R2.
.TR2. .S.

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-3 which is -number 3

\#

\# \# ..Chrom..Markr. .Position. .LOD Score. .Additive. .Dominance. .R2.
.TR2. .S.

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-4 which is -number 4

\#

\# \# ..Chrom..Markr. .Position. .LOD Score. .Additive. .Dominance. .R2.
.TR2. .S.

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-5 which is -number 5

\#

\# \# ..Chrom..Markr. .Position. .LOD Score. .Additive. .Dominance. .R2.
.TR2. .S.

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-6 which is -number 6

\#

\# \# ..Chrom..Markr. .Position. .LOD Score. .Additive. .Dominance. .R2.
.TR2. .S.

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-7 which is -number 7

\#

\# \# ..Chrom..Markr. .Position. .LOD Score. .Additive. .Dominance. .R2.
.TR2. .S.

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-8 which is -number 8

\#

\# \# ..Chrom..Markr. .Position. .LOD Score. .Additive. .Dominance. .R2.
.TR2. .S.

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-9 which is -number 9

\#

\# \# ..Chrom..Markr. .Position. .LOD Score. .Additive. .Dominance. .R2.
.TR2. .S.

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-10 which is -number 10

\#

\# \# ..Chrom..Markr. .Position. .LOD Score. .Additive. .Dominance. .R2.
.TR2. .S.

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 8

\# for trait -named Trait-11 which is -number 11

\#

\# \# ..Chrom..Markr. .Position. .LOD Score. .Additive. .Dominance. .R2.
.TR2. .S.

1 2 5 33.3100 3.2171 -0.8946 0.0000 0.0932 0.5616 1.2531

2 3 5 36.9100 3.2096 0.7739 0.0000 0.1137 0.5863 0.6152

3 3 6 49.6100 4.4353 -0.8790 0.0000 0.1651 0.5873 2.2865

4 3 8 52.0100 4.6287 -0.8350 0.0000 0.1415 0.5638 1.0004

5 6 7 50.2100 2.7132 -0.4740 0.0000 0.0815 0.5650 1.3145

6 8 9 49.9100 3.5762 0.7055 0.0000 0.1069 0.5525 0.1528

7 8 10 53.5100 3.7683 0.6981 0.0000 0.1134 0.5590 1.3732

8 13 1 0.0100 2.8063 -0.4558 0.0000 0.0827 0.5615 1.3863

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-12 which is -number 12

\#

\# \# ..Chrom..Markr. .Position. .LOD Score. .Additive. .Dominance. .R2.
.TR2. .S.

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-13 which is -number 13

\#

\# \# ..Chrom..Markr. .Position. .LOD Score. .Additive. .Dominance. .R2.
.TR2. .S.

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-14 which is -number 14

\#

\# \# ..Chrom..Markr. .Position. .LOD Score. .Additive. .Dominance. .R2.
.TR2. .S.

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

#End of this block of information

\#

\# The following section is formatted just like an Rqtl.out file.

\# If this is a part of an Eqtl.out file, it is here just in case

\# you want to use it as input for Rcross or Zmapqtl. Otherwise,

\# the information between the start and end tokens is identical to

\# what has been written above. If this is an Rqtl.out file,

\# disregard this note.

\#

\# Below, those lines that start with a minus sign and an l (-l)

\# define loci, while those that start with a minus sign and an i (-i)

\# define epistatic interactions between the loci previously defined.

\# The loci must be defined before the interactions can be defined.

\# For some experimental designs, some interactions will be ignored.

\#

-start model

\#

\# Here is the data on the QTLS\...

\#

-t 14 is the number of traits

\#

\#

-k 0

\# for trait -named Trait-1 which is -number 1

\#

\# \# ..Chrom..Markr. .RecombiL. .RecombiR. .Additive. .Dominance

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-2 which is -number 2

\#

\# \# ..Chrom..Markr. .RecombiL. .RecombiR. .Additive. .Dominance

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-3 which is -number 3

\#

\# \# ..Chrom..Markr. .RecombiL. .RecombiR. .Additive. .Dominance

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-4 which is -number 4

\#

\# \# ..Chrom..Markr. .RecombiL. .RecombiR. .Additive. .Dominance

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-5 which is -number 5

\#

\# \# ..Chrom..Markr. .RecombiL. .RecombiR. .Additive. .Dominance

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-6 which is -number 6

\#

\# \# ..Chrom..Markr. .RecombiL. .RecombiR. .Additive. .Dominance

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-7 which is -number 7

\#

\# \# ..Chrom..Markr. .RecombiL. .RecombiR. .Additive. .Dominance

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-8 which is -number 8

\#

\# \# ..Chrom..Markr. .RecombiL. .RecombiR. .Additive. .Dominance

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-9 which is -number 9

\#

\# \# ..Chrom..Markr. .RecombiL. .RecombiR. .Additive. .Dominance

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-10 which is -number 10

\#

\# \# ..Chrom..Markr. .RecombiL. .RecombiR. .Additive. .Dominance

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 8

\# for trait -named Trait-11 which is -number 11

\#

\# \# ..Chrom..Markr. .RecombiL. .RecombiR. .Additive. .Dominance

-l 1 2 5 0.0001 0.0870 -0.8946 0.0000

-l 2 3 5 0.0101 0.0957 0.7739 0.0000

-l 3 3 6 0.0301 0.0179 -0.8790 0.0000

-l 4 3 8 0.0001 0.0129 -0.8350 0.0000

-l 5 6 7 0.0988 0.0069 -0.4740 0.0000

-l 6 8 9 0.0001 0.0059 0.7055 0.0000

-l 7 8 10 0.0301 0.0029 0.6981 0.0000

-l 8 13 1 0.0001 0.1271 -0.4558 0.0000

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-12 which is -number 12

\#

\# \# ..Chrom..Markr. .RecombiL. .RecombiR. .Additive. .Dominance

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-13 which is -number 13

\#

\# \# ..Chrom..Markr. .RecombiL. .RecombiR. .Additive. .Dominance

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-14 which is -number 14

\#

\# \# ..Chrom..Markr. .RecombiL. .RecombiR. .Additive. .Dominance

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

#End of this block of information

\#

-end model

\#