The following is the content of file sc.wi-eqtl.txt

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\# 1129301712 -filetype Eqtl.out

\#

\# QTL Cartographer v. 1.15a, 25 Oct 00

\# This output file (sc.WI-EQTL.txt) was created by Eqtl\...

\#

\# It is 09:55:12 on Friday, 14 October 2005

\#

\#

\# The following is for hypothesis test 10 and Zmapqtl model 6

\#

\# Here is the data on the QTLS\...

\#

-t 14 is the number of traits

\#

\#

-k 0

\# for trait -named Trait-1 which is -number 1

\#

\# \# ..Chrom..Markr. .Position. .LOD Score. .Additive. .Dominance. .R2.
.TR2. .S.

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-2 which is -number 2

\#

\# \# ..Chrom..Markr. .Position. .LOD Score. .Additive. .Dominance. .R2.
.TR2. .S.

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-3 which is -number 3

\#

\# \# ..Chrom..Markr. .Position. .LOD Score. .Additive. .Dominance. .R2.
.TR2. .S.

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-4 which is -number 4

\#

\# \# ..Chrom..Markr. .Position. .LOD Score. .Additive. .Dominance. .R2.
.TR2. .S.

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-5 which is -number 5

\#

\# \# ..Chrom..Markr. .Position. .LOD Score. .Additive. .Dominance. .R2.
.TR2. .S.

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-6 which is -number 6

\#

\# \# ..Chrom..Markr. .Position. .LOD Score. .Additive. .Dominance. .R2.
.TR2. .S.

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-7 which is -number 7

\#

\# \# ..Chrom..Markr. .Position. .LOD Score. .Additive. .Dominance. .R2.
.TR2. .S.

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 12

\# for trait -named Trait-8 which is -number 8

\#

\# \# ..Chrom..Markr. .Position. .LOD Score. .Additive. .Dominance. .R2.
.TR2. .S.

1 1 13 40.5100 4.7740 -0.1397 0.0000 0.0903 0.7339 0.4431

2 1 15 45.6100 7.0236 -0.1630 0.0000 0.1232 0.7668 0.2608

3 1 16 54.4100 5.7386 -0.1511 0.0000 0.1122 0.7559 0.1003

4 1 26 146.0100 2.3038 -0.0881 0.0000 0.0348 0.7647 0.1472

5 1 28 150.6100 2.4283 -0.0863 0.0000 0.0365 0.7664 0.1027

6 1 31 154.3100 2.6308 -0.0929 0.0000 0.0393 0.7692 0.2331

7 3 9 53.3100 2.1407 0.1259 0.0000 0.0315 0.7692 0.2311

8 4 1 0.0100 4.4014 0.1261 0.0000 0.0706 0.7684 0.3058

9 8 1 11.0100 3.0083 -0.1099 0.0000 0.0528 0.7789 0.0084

10 8 2 13.1100 3.0992 -0.1124 0.0000 0.0494 0.7755 0.1449

11 8 9 49.9100 2.9101 -0.1103 0.0000 0.0439 0.7692 0.2309

12 10 4 37.6100 3.1152 0.1039 0.0000 0.0507 0.7738 0.2838

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-9 which is -number 9

\#

\# \# ..Chrom..Markr. .Position. .LOD Score. .Additive. .Dominance. .R2.
.TR2. .S.

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-10 which is -number 10

\#

\# \# ..Chrom..Markr. .Position. .LOD Score. .Additive. .Dominance. .R2.
.TR2. .S.

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-11 which is -number 11

\#

\# \# ..Chrom..Markr. .Position. .LOD Score. .Additive. .Dominance. .R2.
.TR2. .S.

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-12 which is -number 12

\#

\# \# ..Chrom..Markr. .Position. .LOD Score. .Additive. .Dominance. .R2.
.TR2. .S.

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-13 which is -number 13

\#

\# \# ..Chrom..Markr. .Position. .LOD Score. .Additive. .Dominance. .R2.
.TR2. .S.

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-14 which is -number 14

\#

\# \# ..Chrom..Markr. .Position. .LOD Score. .Additive. .Dominance. .R2.
.TR2. .S.

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

#End of this block of information

\#

\# The following section is formatted just like an Rqtl.out file.

\# If this is a part of an Eqtl.out file, it is here just in case

\# you want to use it as input for Rcross or Zmapqtl. Otherwise,

\# the information between the start and end tokens is identical to

\# what has been written above. If this is an Rqtl.out file,

\# disregard this note.

\#

\# Below, those lines that start with a minus sign and an l (-l)

\# define loci, while those that start with a minus sign and an i (-i)

\# define epistatic interactions between the loci previously defined.

\# The loci must be defined before the interactions can be defined.

\# For some experimental designs, some interactions will be ignored.

\#

-start model

\#

\# Here is the data on the QTLS\...

\#

-t 14 is the number of traits

\#

\#

-k 0

\# for trait -named Trait-1 which is -number 1

\#

\# \# ..Chrom..Markr. .RecombiL. .RecombiR. .Additive. .Dominance

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-2 which is -number 2

\#

\# \# ..Chrom..Markr. .RecombiL. .RecombiR. .Additive. .Dominance

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-3 which is -number 3

\#

\# \# ..Chrom..Markr. .RecombiL. .RecombiR. .Additive. .Dominance

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-4 which is -number 4

\#

\# \# ..Chrom..Markr. .RecombiL. .RecombiR. .Additive. .Dominance

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-5 which is -number 5

\#

\# \# ..Chrom..Markr. .RecombiL. .RecombiR. .Additive. .Dominance

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-6 which is -number 6

\#

\# \# ..Chrom..Markr. .RecombiL. .RecombiR. .Additive. .Dominance

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-7 which is -number 7

\#

\# \# ..Chrom..Markr. .RecombiL. .RecombiR. .Additive. .Dominance

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 12

\# for trait -named Trait-8 which is -number 8

\#

\# \# ..Chrom..Markr. .RecombiL. .RecombiR. .Additive. .Dominance

-l 1 1 13 0.0101 0.0029 -0.1397 0.0000

-l 2 1 15 0.0001 0.0478 -0.1630 0.0000

-l 3 1 16 0.0400 0.0129 -0.1511 0.0000

-l 4 1 26 0.0001 0.0398 -0.0881 0.0000

-l 5 1 28 0.0001 0.0059 -0.0863 0.0000

-l 6 1 31 0.0001 0.0497 -0.0929 0.0000

-l 7 3 9 0.0001 0.0259 0.1259 0.0000

-l 8 4 1 0.0001 0.0209 0.1261 0.0000

-l 9 8 1 0.1084 0.0109 -0.1099 0.0000

-l 10 8 2 0.0101 0.0109 -0.1124 0.0000

-l 11 8 9 0.0001 0.0059 -0.1103 0.0000

-l 12 10 4 0.0201 0.0099 0.1039 0.0000

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-9 which is -number 9

\#

\# \# ..Chrom..Markr. .RecombiL. .RecombiR. .Additive. .Dominance

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-10 which is -number 10

\#

\# \# ..Chrom..Markr. .RecombiL. .RecombiR. .Additive. .Dominance

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-11 which is -number 11

\#

\# \# ..Chrom..Markr. .RecombiL. .RecombiR. .Additive. .Dominance

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-12 which is -number 12

\#

\# \# ..Chrom..Markr. .RecombiL. .RecombiR. .Additive. .Dominance

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-13 which is -number 13

\#

\# \# ..Chrom..Markr. .RecombiL. .RecombiR. .Additive. .Dominance

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-14 which is -number 14

\#

\# \# ..Chrom..Markr. .RecombiL. .RecombiR. .Additive. .Dominance

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

#End of this block of information

\#

-end model

\#