The following is the content of file ratio.ca-eqtl.txt

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\# 1129409688 -filetype Eqtl.out

\#

\# QTL Cartographer v. 1.15a, 25 Oct 00

\# This output file (ratio.CA-EQTL.txt) was created by Eqtl\...

\#

\# It is 15:54:48 on Saturday, 15 October 2005

\#

\#

\# The following is for hypothesis test 10 and Zmapqtl model 6

\#

\# Here is the data on the QTLS\...

\#

-t 14 is the number of traits

\#

\#

-k 0

\# for trait -named Trait-1 which is -number 1

\#

\# \# ..Chrom..Markr. .Position. .LOD Score. .Additive. .Dominance. .R2.
.TR2. .S.

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-2 which is -number 2

\#

\# \# ..Chrom..Markr. .Position. .LOD Score. .Additive. .Dominance. .R2.
.TR2. .S.

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-3 which is -number 3

\#

\# \# ..Chrom..Markr. .Position. .LOD Score. .Additive. .Dominance. .R2.
.TR2. .S.

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-4 which is -number 4

\#

\# \# ..Chrom..Markr. .Position. .LOD Score. .Additive. .Dominance. .R2.
.TR2. .S.

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-5 which is -number 5

\#

\# \# ..Chrom..Markr. .Position. .LOD Score. .Additive. .Dominance. .R2.
.TR2. .S.

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-6 which is -number 6

\#

\# \# ..Chrom..Markr. .Position. .LOD Score. .Additive. .Dominance. .R2.
.TR2. .S.

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-7 which is -number 7

\#

\# \# ..Chrom..Markr. .Position. .LOD Score. .Additive. .Dominance. .R2.
.TR2. .S.

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-8 which is -number 8

\#

\# \# ..Chrom..Markr. .Position. .LOD Score. .Additive. .Dominance. .R2.
.TR2. .S.

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 12

\# for trait -named Trait-9 which is -number 9

\#

\# \# ..Chrom..Markr. .Position. .LOD Score. .Additive. .Dominance. .R2.
.TR2. .S.

1 1 24 138.7100 4.6360 0.0118 0.0000 0.1651 0.7366 4.1968

2 1 26 148.0100 2.1213 0.0074 0.0000 0.0559 0.6274 2.5400

3 1 33 171.8100 2.5987 -0.0078 0.0000 0.0578 0.6651 7.1579

4 3 23 105.8100 3.0255 0.0060 0.0000 0.0659 0.6678 6.7336

5 4 1 0.0100 9.2425 0.0129 0.0000 0.2521 0.6613 7.0495

6 4 5 51.5100 3.3565 0.0070 0.0000 0.0740 0.6681 6.7370

7 4 7 78.2100 8.8947 -0.0140 0.0000 0.2419 0.7071 4.6359

8 5 8 75.4100 2.5909 0.0057 0.0000 0.0596 0.6713 7.2513

9 9 2 21.2100 2.6327 0.0055 0.0000 0.0568 0.6674 6.9122

10 9 3 29.0100 2.1360 0.0058 0.0000 0.0613 0.6719 6.7897

11 12 1 7.0100 2.0054 -0.0057 0.0000 0.0622 0.6978 8.7926

12 15 1 0.0100 3.1371 0.0064 0.0000 0.0711 0.6718 6.7534

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-10 which is -number 10

\#

\# \# ..Chrom..Markr. .Position. .LOD Score. .Additive. .Dominance. .R2.
.TR2. .S.

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-11 which is -number 11

\#

\# \# ..Chrom..Markr. .Position. .LOD Score. .Additive. .Dominance. .R2.
.TR2. .S.

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-12 which is -number 12

\#

\# \# ..Chrom..Markr. .Position. .LOD Score. .Additive. .Dominance. .R2.
.TR2. .S.

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-13 which is -number 13

\#

\# \# ..Chrom..Markr. .Position. .LOD Score. .Additive. .Dominance. .R2.
.TR2. .S.

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-14 which is -number 14

\#

\# \# ..Chrom..Markr. .Position. .LOD Score. .Additive. .Dominance. .R2.
.TR2. .S.

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

#End of this block of information

\#

\# The following section is formatted just like an Rqtl.out file.

\# If this is a part of an Eqtl.out file, it is here just in case

\# you want to use it as input for Rcross or Zmapqtl. Otherwise,

\# the information between the start and end tokens is identical to

\# what has been written above. If this is an Rqtl.out file,

\# disregard this note.

\#

\# Below, those lines that start with a minus sign and an l (-l)

\# define loci, while those that start with a minus sign and an i (-i)

\# define epistatic interactions between the loci previously defined.

\# The loci must be defined before the interactions can be defined.

\# For some experimental designs, some interactions will be ignored.

\#

-start model

\#

\# Here is the data on the QTLS\...

\#

-t 14 is the number of traits

\#

\#

-k 0

\# for trait -named Trait-1 which is -number 1

\#

\# \# ..Chrom..Markr. .RecombiL. .RecombiR. .Additive. .Dominance

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-2 which is -number 2

\#

\# \# ..Chrom..Markr. .RecombiL. .RecombiR. .Additive. .Dominance

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-3 which is -number 3

\#

\# \# ..Chrom..Markr. .RecombiL. .RecombiR. .Additive. .Dominance

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-4 which is -number 4

\#

\# \# ..Chrom..Markr. .RecombiL. .RecombiR. .Additive. .Dominance

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-5 which is -number 5

\#

\# \# ..Chrom..Markr. .RecombiL. .RecombiR. .Additive. .Dominance

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-6 which is -number 6

\#

\# \# ..Chrom..Markr. .RecombiL. .RecombiR. .Additive. .Dominance

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-7 which is -number 7

\#

\# \# ..Chrom..Markr. .RecombiL. .RecombiR. .Additive. .Dominance

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-8 which is -number 8

\#

\# \# ..Chrom..Markr. .RecombiL. .RecombiR. .Additive. .Dominance

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 12

\# for trait -named Trait-9 which is -number 9

\#

\# \# ..Chrom..Markr. .RecombiL. .RecombiR. .Additive. .Dominance

-l 1 1 24 0.0794 0.0279 0.0118 0.0000

-l 2 1 26 0.0201 0.0199 0.0074 0.0000

-l 3 1 33 0.0001 0.2904 -0.0078 0.0000

-l 4 3 23 0.0001 0.2642 0.0060 0.0000

-l 5 4 1 0.0001 0.0209 0.0129 0.0000

-l 6 4 5 0.0001 0.0724 0.0070 0.0000

-l 7 4 7 0.0201 0.0129 -0.0140 0.0000

-l 8 5 8 0.1638 0.0079 0.0057 0.0000

-l 9 9 2 0.0001 0.0478 0.0055 0.0000

-l 10 9 3 0.0301 0.0358 0.0058 0.0000

-l 11 12 1 0.0696 0.0870 -0.0057 0.0000

-l 12 15 1 0.0001 0.0655 0.0064 0.0000

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-10 which is -number 10

\#

\# \# ..Chrom..Markr. .RecombiL. .RecombiR. .Additive. .Dominance

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-11 which is -number 11

\#

\# \# ..Chrom..Markr. .RecombiL. .RecombiR. .Additive. .Dominance

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-12 which is -number 12

\#

\# \# ..Chrom..Markr. .RecombiL. .RecombiR. .Additive. .Dominance

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-13 which is -number 13

\#

\# \# ..Chrom..Markr. .RecombiL. .RecombiR. .Additive. .Dominance

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

-k 0

\# for trait -named Trait-14 which is -number 14

\#

\# \# ..Chrom..Markr. .RecombiL. .RecombiR. .Additive. .Dominance

\#

\# QTL1 QTL2 Type Value

\#

\#

\#

#End of this block of information

\#

-end model

\#