AniketTec/github-issues huggingface dataset:
Title: Error when calculating glue score
State: closed

I was trying glue score along with other metrics here. But glue gives me this error;

```
import nlp
glue_metric = nlp.load_metric('glue',name="cola")

glue_score = glue_metric.compute(predictions, references)
```

```
---------------------------------------------------------------------------
---------------------------------------------------------------------------
TypeError                                 Traceback (most recent call last)
<ipython-input-8-b9210a524504> in <module>()
----> 1 glue_score = glue_metric.compute(predictions, references)

6 frames
/usr/local/lib/python3.6/dist-packages/nlp/metric.py in compute(self, predictions, references, timeout, **metrics_kwargs)
    191         """
    192         if predictions is not None:
--> 193             self.add_batch(predictions=predictions, references=references)
    194         self.finalize(timeout=timeout)
    195 

/usr/local/lib/python3.6/dist-packages/nlp/metric.py in add_batch(self, predictions, references, **kwargs)
    207         if self.writer is None:
    208             self._init_writer()
--> 209         self.writer.write_batch(batch)
    210 
    211     def add(self, prediction=None, reference=None, **kwargs):

/usr/local/lib/python3.6/dist-packages/nlp/arrow_writer.py in write_batch(self, batch_examples, writer_batch_size)
    155         if self.pa_writer is None:
    156             self._build_writer(pa_table=pa.Table.from_pydict(batch_examples))
--> 157         pa_table: pa.Table = pa.Table.from_pydict(batch_examples, schema=self._schema)
    158         if writer_batch_size is None:
    159             writer_batch_size = self.writer_batch_size

/usr/local/lib/python3.6/dist-packages/pyarrow/types.pxi in __iter__()

/usr/local/lib/python3.6/dist-packages/pyarrow/array.pxi in pyarrow.lib.asarray()

/usr/local/lib/python3.6/dist-packages/pyarrow/array.pxi in pyarrow.lib.array()

/usr/local/lib/python3.6/dist-packages/pyarrow/array.pxi in pyarrow.lib._sequence_to_array()

TypeError: an integer is required (got type str)
```
I'm not sure whether I'm doing this wrong or whether it's an issue. I would like to know a workaround. Thank you.

Comments:
Title: Add package path to sys when downloading package as github archive
State: closed

This fixes the `coval.py` metric so that imports within the downloaded module work correctly. We can use a similar trick to add the BLEURT metric (@ankparikh)

@thomwolf not sure how you feel about adding to the `PYTHONPATH` from the script. This is the only way I could make it work with my understanding of `importlib` but there might be a more elegant method.

This PR fixes https://github.com/huggingface/nlp/issues/305

Comments:
Title: output nested dict in get_nearest_examples
State: closed

As we are using a columnar format like arrow as the backend for datasets, we expect to have a dictionary of columns when we slice a dataset like in this example:
```python
my_examples = dataset[0:10]
print(type(my_examples))
# >>> dict
print(my_examples["my_column"][0]
# >>> this is the first element of the column 'my_column'
```

Therefore I wanted to keep this logic when calling `get_nearest_examples` that returns the top 10 nearest examples:
```python
dataset.add_faiss_index(column="embeddings")
scores, examples = dataset.get_nearest_examples("embeddings", query=my_numpy_embedding)
print(type(examples))
# >>> dict
```

Previously it was returning a list[dict]. It was the only place that was using this output format.

To make it work I had to implement `__getitem__(key)` where `key` is a list.
This is different from `.select` because `.select` is a dataset transform (it returns a new dataset object) while `__getitem__` is an extraction method (it returns python dictionaries).

Comments:
Title: ERROR:root:mwparserfromhell
State: closed
Labels: description: A bug in a dataset script provided in the library
name: dataset bug

Hi,

I am trying to download some wikipedia data but I got this error for spanish "es" (but there are maybe some others languages which have the same error I haven't tried all of them ).

`ERROR:root:mwparserfromhell ParseError: This is a bug and should be reported. Info: C tokenizer exited with non-empty token stack.`

The code I have use was : 
`dataset = load_dataset('wikipedia', '20200501.es', beam_runner='DirectRunner')`



Comments:
Title: Blog Authorship Corpus, Non Matching Splits Sizes Error, nlp viewer
State: closed
Labels: name: nlp-viewer

Selecting `blog_authorship_corpus` in the nlp viewer throws the following error: 

```
NonMatchingSplitsSizesError: [{'expected': SplitInfo(name='train', num_bytes=610252351, num_examples=532812, dataset_name='blog_authorship_corpus'), 'recorded': SplitInfo(name='train', num_bytes=614706451, num_examples=535568, dataset_name='blog_authorship_corpus')}, {'expected': SplitInfo(name='validation', num_bytes=37500394, num_examples=31277, dataset_name='blog_authorship_corpus'), 'recorded': SplitInfo(name='validation', num_bytes=32553710, num_examples=28521, dataset_name='blog_authorship_corpus')}]
Traceback:
File "/home/sasha/streamlit/lib/streamlit/ScriptRunner.py", line 322, in _run_script
    exec(code, module.__dict__)
File "/home/sasha/nlp-viewer/run.py", line 172, in <module>
    dts, fail = get(str(option.id), str(conf_option.name) if conf_option else None)
File "/home/sasha/streamlit/lib/streamlit/caching.py", line 591, in wrapped_func
    return get_or_create_cached_value()
File "/home/sasha/streamlit/lib/streamlit/caching.py", line 575, in get_or_create_cached_value
    return_value = func(*args, **kwargs)
File "/home/sasha/nlp-viewer/run.py", line 132, in get
    builder_instance.download_and_prepare()
File "/home/sasha/.local/share/virtualenvs/lib-ogGKnCK_/lib/python3.7/site-packages/nlp/builder.py", line 432, in download_and_prepare
    dl_manager=dl_manager, verify_infos=verify_infos, **download_and_prepare_kwargs
File "/home/sasha/.local/share/virtualenvs/lib-ogGKnCK_/lib/python3.7/site-packages/nlp/builder.py", line 488, in _download_and_prepare
    verify_splits(self.info.splits, split_dict)
File "/home/sasha/.local/share/virtualenvs/lib-ogGKnCK_/lib/python3.7/site-packages/nlp/utils/info_utils.py", line 70, in verify_splits
    raise NonMatchingSplitsSizesError(str(bad_splits))
```
@srush @lhoestq 

Comments:
Title: Nested sequences with dicts
State: closed

Am pretty much finished [adding a dataset](https://github.com/ghomasHudson/nlp/blob/DocRED/datasets/docred/docred.py) for [DocRED](https://github.com/thunlp/DocRED), but am getting an error when trying to add a nested `nlp.features.sequence(nlp.features.sequence({key:value,...}))`. 

The original data is in this format:
```python
{
  'title': "Title of wiki page",
  'vertexSet': [
                  [
                    { 'name': "mention_name", 
                      'sent_id': "mention in which sentence", 
                      'pos': ["postion of mention in a sentence"], 
                      'type': "NER_type"},
                    {another mention}
                  ], 
                  [another entity]
                ]
    ...
}
```
So to represent this I've attempted to write:
```
...
features=nlp.Features({
    "title": nlp.Value("string"),
    "vertexSet": nlp.features.Sequence(nlp.features.Sequence({
        "name": nlp.Value("string"),
        "sent_id": nlp.Value("int32"),
        "pos": nlp.features.Sequence(nlp.Value("int32")),
        "type": nlp.Value("string"),
    })),
    ...
    }),
...
```
This is giving me the error:
```
pyarrow.lib.ArrowTypeError: Could not convert [{'pos': [[0,2], [2,4], [3,5]], "type": ["ORG", "ORG", "ORG"], "name": ["Lark Force", "Lark Force", "Lark Force", "sent_id": [0, 3, 4]}..... with type list: was not a dict, tuple, or recognized null value for conversion to struct type
```
Do we expect the pyarrow stuff to break when doing this deeper nesting? I've checked that it still works when you do `nlp.features.Sequence(nlp.features.Sequence(nlp.Value("string"))` or `nlp.features.Sequence({key:value,...})` just not nested sequences with a dict.

If it's not possible, I can always convert it to a shallower structure. I'd rather not change the DocRED authors' structure if I don't have to though.

Comments:
Title: Multitask
State: closed

Following our discussion in #217, I've implemented a first working version of `MultiDataset`.

There's a function `build_multitask()` which takes either individual `nlp.Dataset`s or `dicts` of splits and constructs `MultiDataset`(s). I've added a notebook with example usage.

I've implemented many of the `nlp.Dataset` methods (cache_files, columns, nbytes, num_columns, num_rows, column_names, schema, shape). Some of the other methods are complicated as they change the number of examples. These raise `NotImplementedError`s at the moment.

This will need some tests which I haven't written yet.

There's definitely room for improvements but I think the general approach is sound. 

Comments:
Title: Adding a dataset with multiple subtasks
State: closed

I intent to add the datasets of the MT Quality Estimation shared tasks to `nlp`. However, they have different subtasks -- such as word-level, sentence-level and document-level quality estimation, each of which having different language pairs, and some of the data reused in different subtasks.

For example, in [QE 2019,](http://www.statmt.org/wmt19/qe-task.html) we had the same English-Russian and English-German data for word-level and sentence-level QE. 

I suppose these datasets could have both their word and sentence-level labels inside `nlp.Features`; but what about other subtasks? Should they be considered a different dataset altogether?

I read the discussion on #217 but the case of QE seems a lot simpler.

Comments:
Title: [Question] Best way to batch a large dataset?
State: open
Labels: description: Generic discussion on the library
name: generic discussion

I'm training on large datasets such as Wikipedia and BookCorpus. Following the instructions in [the tutorial notebook](https://colab.research.google.com/github/huggingface/nlp/blob/master/notebooks/Overview.ipynb), I see the following recommended for TensorFlow:

```python
train_tf_dataset = train_tf_dataset.filter(remove_none_values, load_from_cache_file=False)
columns = ['input_ids', 'token_type_ids', 'attention_mask', 'start_positions', 'end_positions']
train_tf_dataset.set_format(type='tensorflow', columns=columns)
features = {x: train_tf_dataset[x].to_tensor(default_value=0, shape=[None, tokenizer.max_len]) for x in columns[:3]} 
labels = {"output_1": train_tf_dataset["start_positions"].to_tensor(default_value=0, shape=[None, 1])}
labels["output_2"] = train_tf_dataset["end_positions"].to_tensor(default_value=0, shape=[None, 1])
### Question about this last line ###
tfdataset = tf.data.Dataset.from_tensor_slices((features, labels)).batch(8)
```

This code works for something like WikiText-2. However, scaling up to WikiText-103, the last line takes 5-10 minutes to run. I assume it is because tf.data.Dataset.from_tensor_slices() is pulling everything into memory, not lazily loading. This approach won't scale up to datasets 25x larger such as Wikipedia.

So I tried manual batching using `dataset.select()`:

```python
idxs = np.random.randint(len(dataset), size=bsz)
batch = dataset.select(idxs).map(lambda example: {"input_ids": tokenizer(example["text"])})
tf_batch = tf.constant(batch["ids"], dtype=tf.int64)
```

This appears to create a new Apache Arrow dataset with every batch I grab, and then tries to cache it. The runtime of `dataset.select([0, 1])` appears to be much worse than `dataset[:2]`. So using `select()` doesn't seem to be performant enough for a training loop.

Is there a performant scalable way to lazily load batches of nlp Datasets?

Comments:
Title: Add MWSC
State: closed

Adding the [Modified Winograd Schema Challenge](https://github.com/salesforce/decaNLP/blob/master/local_data/schema.txt) dataset which formed part of the [decaNLP](http://decanlp.com/) benchmark. Not sure how much use people would find for it it outside of the benchmark, but it is general purpose.

Code is heavily borrowed from the [decaNLP repo](https://github.com/salesforce/decaNLP/blob/1e9605f246b9e05199b28bde2a2093bc49feeeaa/text/torchtext/datasets/generic.py#L773-L877).

There's a few (possibly overly opinionated) design choices I made:

- I used the train/test/dev split [buried in the decaNLP code](https://github.com/salesforce/decaNLP/blob/1e9605f246b9e05199b28bde2a2093bc49feeeaa/text/torchtext/datasets/generic.py#L852-L855)
- I split out each example into the 2 alternatives. Originally the data uses the format:
    ```
    The city councilmen refused the demonstrators a permit because they [feared/advocated] violence. 
    Who [feared/advocated] violence? 
    councilmen/demonstrators
    ```
    I split into the 2 variants:
    ```
    The city councilmen refused the demonstrators a permit because they feared violence. 
    Who feared violence? 
    councilmen/demonstrators
    
    The city councilmen refused the demonstrators a permit because they advocated violence. 
    Who advocated violence? 
    councilmen/demonstrators
    ```
    I can't see any use for having the options combined into a single example (splitting them is [the way decaNLP processes](https://github.com/salesforce/decaNLP/blob/1e9605f246b9e05199b28bde2a2093bc49feeeaa/text/torchtext/datasets/generic.py#L846-L850)) them. You can't train on both versions with them combined, and splitting the examples later would be a pain to do. I think [winogrande.py](https://github.com/huggingface/nlp/blob/master/datasets/winogrande/winogrande.py) presents the data in this way?

- I've not used the decaNLP framing (appending the options to the question e.g. `Who feared violence? 
 -- councilmen or demonstrators?`) but left it more generic by adding the options as a new key: `"options":["councilmen","demonstrators"]` This should be an easy thing to change using `map` if needed by a specific application.

Dataset is working as-is but if anyone has any thoughts/preferences on the design decisions here I'm definitely open to different choices.

Comments:
Title: [Feature request] Add `shard()` method to dataset
State: closed

Currently, to shard a dataset into 10 pieces on different ranks, you can run

```python
rank = 3 # for example
size = 10
dataset = nlp.load_dataset('wikitext', 'wikitext-2-raw-v1', split=f"train[{rank*10}%:{(rank+1)*10}%]")
```

However, this breaks down if you have a number of ranks that doesn't divide cleanly into 100, such as 64 ranks. Is there interest in adding a method shard() that looks like this?

```python
rank = 3
size = 64
dataset = nlp.load_dataset("wikitext", "wikitext-2-raw-v1", split="train").shard(rank=rank, size=size)
```

TensorFlow has a similar API: https://www.tensorflow.org/api_docs/python/tf/data/Dataset#shard. I'd be happy to contribute this code.

Comments:
Title: add wikisql
State: closed

Adding the [WikiSQL](https://github.com/salesforce/WikiSQL) dataset.

Interesting things to note:
- Have copied the function (`_convert_to_human_readable`) which converts the SQL query to a human-readable (string) format as this is what most people will want when actually using this dataset for NLP applications.
- `conds` was originally a tuple but is converted to a dictionary to support differing types.

Would be nice to add the logical_form metrics too at some point.

Comments:
Title: Importing downloaded package repository fails
State: closed
Labels: description: A bug in a metric script
name: metric bug

The `get_imports` function in `src/nlp/load.py` has a feature to download a package as a zip archive of the github repository and import functions from the unpacked directory. This is used for example in the `metrics/coval.py` file, and would be useful to add BLEURT (@ankparikh).

Currently however, the code seems to have trouble with imports within the package. For example:
```
import nlp
coval = nlp.load_metric('coval')
```
yields:
```
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/home/yacine/Code/nlp/src/nlp/load.py", line 432, in load_metric
    metric_cls = import_main_class(module_path, dataset=False)
  File "/home/yacine/Code/nlp/src/nlp/load.py", line 57, in import_main_class
    module = importlib.import_module(module_path)
  File "/home/yacine/anaconda3/lib/python3.7/importlib/__init__.py", line 127, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
  File "<frozen importlib._bootstrap>", line 1006, in _gcd_import
  File "<frozen importlib._bootstrap>", line 983, in _find_and_load
  File "<frozen importlib._bootstrap>", line 967, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 677, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 728, in exec_module
  File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed
  File "/home/yacine/Code/nlp/src/nlp/metrics/coval/a78807df33ac45edbb71799caf2b3b47e55df4fd690267808fe963a5e8b30952/coval.py", line 21, in <module>
    from .coval_backend.conll import reader  # From: https://github.com/ns-moosavi/coval
  File "/home/yacine/Code/nlp/src/nlp/metrics/coval/a78807df33ac45edbb71799caf2b3b47e55df4fd690267808fe963a5e8b30952/coval_backend/conll/reader.py", line 2, in <module>
    from conll import mention
ModuleNotFoundError: No module named 'conll'
```

Not sure what the fix would be there.

Comments:
Title: Problem while printing doc string when instantiating multiple metrics.
State: closed
Labels: description: A bug in a metric script
name: metric bug

When I load more than one metric and try to print doc string of a particular metric,. It shows the doc strings of all imported metric one after the other which looks quite confusing and clumsy.
Attached [Colab](https://colab.research.google.com/drive/13H0ZgyQ2se0mqJ2yyew0bNEgJuHaJ8H3?usp=sharing) Notebook for problem clarification..

Comments:
Title: Question - Sign Language Datasets
State: closed
Labels: description: New feature or request
name: enhancement

description: Generic discussion on the library
name: generic discussion

An emerging field in NLP is SLP - sign language processing.

I was wondering about adding datasets here, specifically because it's shaping up to be large and easily usable.
The metrics for sign language to text translation are the same.

So, what do you think about (me, or others) adding datasets here?


An example dataset would be [RWTH-PHOENIX-Weather 2014 T](https://www-i6.informatik.rwth-aachen.de/~koller/RWTH-PHOENIX-2014-T/)
For every item in the dataset, the data object includes:
1. video_path - path to mp4 file
2. pose_path - a path to `.pose` file with human pose landmarks
3. openpose_path - a path to a `.json` file with human pose landmarks
4. gloss - string
5. text - string
6. video_metadata - height, width, frames, framerate


------

To make it a tad more complicated - what if sign language libraries add requirements to `nlp`? for example, sign language is commonly annotated using `ilex`, `eaf`, or `srt` files, which are all loadable as text, but there is no reason for the dataset to parse that file by itself, if libraries exist to do so.

Comments:
Title: Setting cache_dir gives error on wikipedia download
State: closed

First of all thank you for a super handy library! I'd like to download large files to a specific drive so I set `cache_dir=my_path`. This works fine with e.g. imdb and squad. But on wikipedia I get an error:
```
nlp.load_dataset('wikipedia', '20200501.de', split = 'train', cache_dir=my_path)
```
```
OSError                                   Traceback (most recent call last)
<ipython-input-2-23551344d7bc> in <module>
      1 import nlp
----> 2 nlp.load_dataset('wikipedia', '20200501.de', split = 'train', cache_dir=path)

~/anaconda3/envs/fastai2/lib/python3.7/site-packages/nlp/load.py in load_dataset(path, name, version, data_dir, data_files, split, cache_dir, download_config, download_mode, ignore_verifications, save_infos, **config_kwargs)
    522         download_mode=download_mode,
    523         ignore_verifications=ignore_verifications,
--> 524         save_infos=save_infos,
    525     )
    526 

~/anaconda3/envs/fastai2/lib/python3.7/site-packages/nlp/builder.py in download_and_prepare(self, download_config, download_mode, ignore_verifications, save_infos, try_from_hf_gcs, dl_manager, **download_and_prepare_kwargs)
    385                     with utils.temporary_assignment(self, "_cache_dir", tmp_data_dir):
    386                         reader = ArrowReader(self._cache_dir, self.info)
--> 387                         reader.download_from_hf_gcs(self._cache_dir, self._relative_data_dir(with_version=True))
    388                         downloaded_info = DatasetInfo.from_directory(self._cache_dir)
    389                         self.info.update(downloaded_info)

~/anaconda3/envs/fastai2/lib/python3.7/site-packages/nlp/arrow_reader.py in download_from_hf_gcs(self, cache_dir, relative_data_dir)
    231             remote_dataset_info = os.path.join(remote_cache_dir, "dataset_info.json")
    232             downloaded_dataset_info = cached_path(remote_dataset_info)
--> 233             os.rename(downloaded_dataset_info, os.path.join(cache_dir, "dataset_info.json"))
    234             if self._info is not None:
    235                 self._info.update(self._info.from_directory(cache_dir))

OSError: [Errno 18] Invalid cross-device link: '/home/local/NTU/nn/.cache/huggingface/datasets/025fa4fd4f04aaafc9e939260fbc8f0bb190ce14c61310c8ae1ddd1dcb31f88c.9637f367b6711a79ca478be55fe6989b8aea4941b7ef7adc67b89ff403020947' -> '/data/nn/nlp/wikipedia/20200501.de/1.0.0.incomplete/dataset_info.json'
```

Comments:
Title: Fix bertscore references
State: closed

I added some type checking for metrics. There was an issue where a metric could interpret a string a a list. A `ValueError` is raised if a string is given instead of a list.

Moreover I added support for both strings and lists of strings for `references` in `bertscore`, as it is the case in the original code.

Both ways work:
```
import nlp

scorer = nlp.load_metric("bertscore")
with open("pred.txt") as p, open("ref.txt") as g:
    for lp, lg in zip(p, g):
        scorer.add(lp, [lg])
score = scorer.compute(lang="en")
```

```
import nlp

scorer = nlp.load_metric("bertscore")
with open("pred.txt") as p, open("ref.txt") as g:
    for lp, lg in zip(p, g):
        scorer.add(lp, lg)
score = scorer.compute(lang="en")
```

This should fix #295 and #238 

Comments:
Title: snli -1 labels
State: closed

I'm trying to train a model on the SNLI dataset. Why does it have so many -1 labels?
```
import nlp
from collections import Counter
data = nlp.load_dataset('snli')['train']
print(Counter(data['label']))
Counter({0: 183416, 2: 183187, 1: 182764, -1: 785})
```


Comments:
Title: Improve input warning for evaluation metrics
State: closed

Hi, 

I am the author of `bert_score`. Recently, we received [ an issue ](https://github.com/Tiiiger/bert_score/issues/62) reporting a problem in using `bert_score` from the `nlp` package (also see #238 in this repo).  After looking into this, I realized that the problem arises from the format `nlp.Metric` takes input. 

Here is a minimal example:
```python
import nlp

scorer = nlp.load_metric("bertscore")
with open("pred.txt") as p, open("ref.txt") as g:
    for lp, lg in zip(p, g):
        scorer.add(lp, lg)
score = scorer.compute(lang="en")
```

The problem in the above code is that `scorer.add()` expects a list of strings as input for the references. As a result, the `scorer` here would take a list of characters in `lg` to be the references. The correct implementation would be calling
```python
scorer.add(lp, [lg])
```

I just want to raise this issue to you to prevent future user errors of a similar kind. I assume some simple type checking can prevent this from happening?

Thanks!

Comments: