AndreaBozzo/ceres-open-data-index huggingface dataset:
CHS_LSSL_Galway2015 North_Atlantic_HFX_Tromso

Geographic bathymetric grid data at 100 m x 100 m pixel resolution.

Datum: WGS84

Collaboration of Canada, the United States of America and the European Union as part of the Atlantic Ocean Research Alliance's second project under the Galway Statement. Project mapped the North Atlantic seafloor along a transect from Halifax, Canada to Tromsø, Norway to further the understanding of marine habitats, conservation and navigation. 

Chief Scientist / Primary Investigator name: Paola Travaglini 

Platform: CCGS Louis S. St- Laurent (Canadian heavy icebreaker)
Device 1 type: Multibeam echo-sounder (sonar)
Device 1 manufacturer: Kongsberg 
Device 1 model: EM122, hull installed behind ice protection window 

Data and Data format:
100 m resolution grid of bathymetry
BAG format: Bathymetric Attributed Grid Object

Navigation and positioning:
   Trimble GNSS receiver + antennas
   Applanix POS/MV v5 inertial measuring system
   Horizontal Datum: WGS84 (G1762) 

Tidal correction:
Zero tide applied: tides are not well known for the major part of the data and tides over very deep water are generally negligible. 

Sound Velocity Profile measurements:
In-situ sound velocity profiles were applied.

Note on accuracy/S-44 survey standards:
Considering the intended output from this survey (IHO Order 1a - Areas shallower than 100 metres where under-keel clearance is less critical but features of concern to surface shipping may exist.) and using an average depth of 2000m as ‘d’ in the IHO Standard Equation - the allowable Total Vertical Uncertainty (TVU) must be < 26m which indeed the data has achieved (by comparison with overlapping datasets from other surveys/agency data).

IHO Order 1a
Horizontal positioning accuracy: 5.0 m + 5% of depth (95% Confidence level)(~105 m at a mean depth of 2000 m)
Vertical positioning accuracy: 2.5 m < 26 m  = Sqrt((0.5 m)^2+(0.013 x 2000 m)^2)

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Coastal Environmental Baseline Program (Newfoundland Region), Placentia Bay CTD Moorings

This project was completed by the Coastal Environmental Baseline Program (Coastal and Freshwater Ecology Section) in the Newfoundland and Labrador Science Branch of Fisheries and Oceans Canada (DFO).  From 2020-2023, there were semi-annual deployments and retrievals of 3 moored CTDs in the bay. From 2020 to November 2021, moored CTDs collected hourly recordings of conductivity, temperature and pressure. From 2021 through 2023, these CTDs collected year-round, hourly, information on temperature, conductivity, pressure, dissolved oxygen, and chlorophyll-a. Acoustic releases also collected hourly ambient noise (mV) data. This record contains the geographic locations of the sites, and information on the timings and types of data collected at each site.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Lab and field evaluation of tagging methods for the use of acoustic telemetry to observe sea urchin movement behaviour at ecologically relevant spatio-temporal scales (https://doi.org/10.1186/s40317-022-00309-8)

Acoustic telemetry allows detailed observations of the movement behaviour of many species and as tags get smaller, smaller organisms may be tagged. The number of studies using acoustic telemetry to evaluate marine invertebrate movement is growing, but novel attachment methods include unknowns about the effects of tagging procedures on individual survival and behaviour. This study compared methods of tag attachment on green sea urchins (Strongylocentrotus droebachiensis) to determine the feasibility of using acoustic transmitters to track echinoid movement. Four tagging methods were compared in the lab and tag retention, urchin condition, and survival analysed. Two tagging methods (Dyneema® fishing line and T-bar tags) were evaluated in the field using an existing acoustic telemetry array. Urchins were tagged and the study area revisited one week and 2 months post-release by scuba divers to estimate movement and tag retention. 
The best methods in the lab, with high tag retention, survival, and minimal effects on urchin condition, were fishing line methods. T-bar tags, although showing high tag retention, caused significant mortality and had deleterious long-term effects on urchin condition and behaviour. After 2 months in the field, as in the lab, fishing line was a more effective tagging method. Urchins tagged with fishing line showed increased estimates of space occupancy compared to T-bar-tagged urchins and a single fishing-line tagged individual was found by divers in good health after 80 days. Combined, these laboratory and field results demonstrate the feasibility of using acoustic telemetry to observe urchin movement. Results strongly suggest that surgical attachment methods that minimize injuries at the attachment site should be prioritized for echinoid tagging studies. Together, lab and field tests indicate that acoustic telemetry is a promising method to examine marine echinoid movement over ecologically relevant spatial and temporal scales.
The data available includes the laboratory data (tag retention, survival, diameter, wet weight, gonad weight and condition/righting time) and the field data (metadata and acoustic telemetry detections for tagged individuals, results of diver searches and 2-day estimates of movement measured in the field). Data from the laboratory experiment and diver observations in the field have been verified and undergone a control for quality. Acoustic telemetry detections are raw detection files (unfiltered); see the published article for a description of how the data were treated for analyses (https://doi.org/10.1186/s40317-022-00309-8).

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Relative occurrence of Northern Wolffish in the Estuary and Gulf of St. Lawrence

Spatial distribution of the relative occurrence of northern wolffish in the annual DFO groundfish research surveys conducted by the Québec (1978-2008) and Gulf (1971-2008) regions. 

Catch and effort data were aggregated by 100 km² cells. The probability of catching an northern wolffish in a set and within a cell (relative occurrence) was calculated as the ratio of the number of sets in which a species was recorded and the total number of sets made. This method allows the mapping of catch and effort for numerous time series based on data from different programs in both the whole study area (research surveys and Sentinel Fisheries using bottom trawls and a random stratified design) or in specific areas within the Gulf.

Source: 

Dutil, J.-D., S. Proulx, S. Hurtubise, and J. Gauthier 2011. Recent findings on the life history and catches of wolffish (Anarhichas sp.) in research surveys and in the Sentinel Fisheries and Observer Program for the Estuary and Gulf of St-Lawrence. DFO Can. Sci. Advis. Sec. Res. Doc. 2010/126: x + 71 pages.

Associated publication:

Dutil, J.-D., Proulx, S., Chouinard, P.-M., and Borcard, D. 2011. A hierarchical classification of the seabed based on physiographic and oceanographic features in the St. Lawrence. Can. Tech. Rep. Fish. Aquat. Sci. 2916: vii + 72 pages. 
http:/ / www.dfo-mpo.gc.ca/ Library/ 342703.pdf.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Pelagic fish group richness in the Estuary and Gulf of St.Lawrence

2014 to 2023 pelagic fish group richness in the Estuary and Gulf of St.Lawrence estimated by the number of species found in each grid cell 10 km x 10 km. Input data are from the annual August and September multidisciplinary surveys.

Purpose

Since 1990, the Department of Fisheries and Oceans has been conducting an annual multidisciplinary survey in the Estuary and northern Gulf of St. Lawrence using a standardized protocol. In the southern Gulf of St. Lawrence, these bottom trawl surveys has been carrying out each September since 1971. These missions are an important source of information about the status of the marine ressources.

The objectives of the surveys are multiple: 
to estimate the abundance and biomass of groundfish and invertebrates, to identify the spatial distribution and biological characteristics of these species, to monitor the biodiversity of the Estuary and Gulf and finally, to describe the environmental conditions observed in the area at the moment of the sampling.

The southern Gulf surveys are realized using the following standardized protocol:
Hurlbut,T. and D.Clay (eds) 1990. Protocols for Research Vessel Cruises within the Gulf Region (Demersal Fish) (1970-1987). Can. MS Rep. Fish. Aquat. Sci. No. 2082: 143p.

The sampling protocols used for the Estuary and northern Gulf surveys are described in details in the following publications:

Bourdages, H., Archambault, D., Bernier, B., Fréchet, A., Gauthier, J., Grégoire, F., Lambert, J., et Savard, L. 2010. Résultats préliminaires du relevé multidisciplinaire de poissons de fond et de crevette d’août 2009 dans le nord du golfe du Saint-Laurent. Rapp. stat. can. sci. halieut. aquat. 1226 : xii+ 72 p. 

Bourdages, H., Archambault, D., Morin, B., Fréchet, A., Savard, L., Grégoire, F., et Bérubé, M. 2003. Résultats préliminaires du relevé multidisciplinaire de poissons de fond et de crevette d’août 2003 dans le nord du golfe du Saint-Laurent. Secr. can. consult. sci. du MPO. Doc. rech. 2003/078. vi + 68 p.

Annual reports are available at the Canadian Science Advisory Secretariat (CSAS), (http://www.dfo-mpo.gc.ca/csas-sccs/index-eng.htm).

Bourdages, H., Brassard, C., Desgagnés, M., Galbraith, P., Gauthier, J., Légaré, B., Nozères, C. and Parent, E. 2017. Preliminary results from the groundfish and shrimp multidisciplinary survey in August 2016 in the Estuary and northern Gulf of St. Lawrence. DFO Can. Sci. Advis. Sec. Res. Doc. 2017/002. v + 87 p.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Dinoflagellate Communities in the Ports of Churchill (MB), Deception Bay (QC), Iqaluit (NU) and Milne Inlet (NU)

The data were collected during two research projects:

Development of community-based monitoring for aquatic invasive species in the Canadian Arctic - preparing for increased shipping related to resource development and climate change;
Diversity of pelagic primary producers in coastal habitats and the potential for harmful blooms in Eastern Canadian Arctic, with a focus near Iqaluit, Nunavut.

Funding was provided by Polar Knowledge Canada, Fisheries and Oceans Canada (Strategic Program for Ecosystem-based Research and Advice, Aquatic Invasive Species Program and Oceans Ocean Protection Plan) and the Nunavik Marine Region Wildlife Board.

These data are the abundance, richness and diversity of dinoflagellate communities in Canadian Arctic seaports to provide baseline data and to verify the presence of potential non-indigenous species and harmful taxa. These data can be used as a reference source for monitoring the introduction of potentially non-native species introduced into Arctic ports where shipping activities are high.

SAMPLING

Dinoflagellate samples were collected using a 20 μm (30 cm diameter) Nitex® plankton net during August in Churchill (MB) (2007 and 2015), in Deception Bay (QC ) (2016), in Iqaluit (NU) (2015 and 2019) and in Milne Inlet (2017). Samples were collected from 1 m of the surface to 1 m above the bottom.

PREPARATION : Samples were stored in 4% formaldehyde. Sample preparation and counting were performed using the Utermöhl method.

OBSERVATION : Samples were observed using an inverted microscope (NIKON Eclipse TE-2000-U) under a magnification of 200x.

ABUNDANCE : The calculation of the abundance of dinoflagellates (cell / liter) was carried out as follows: Number of cells X Volume of the bottle / Volume of the Utermöhl chamber / (pi X Radius^2 X Depth) X 1000

ENVIRONMENTAL VARIABLES

Environmental data were measured using a CTD and a Secchi disk. The time between sea ice melt and sampling was calculated by subtracting the sampling day from the breakup dates (ice concentration <1/10) which were extracted from the Canadian Ice Service records.

For further information, please consult the following paper: Dhifallah F, Rochon A, Simard N, McKindsey CW, Gosselin M, Howland KL. 2022. Dinoflagellate communities in high-risk Canadian Arctic ports. Estuarine, Coastal and Shelf Science 266:107731

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Pelagic Shark Satellite Tag data - Spiny Dogfish

Spiny dogfish (Squlaus acanthias),  is a species found in Atlantic Canadian waters which is encountered mostly in commercial fisheries. Pop-up Satellite Archival Tags (PSAT) from Wildlife Computers were applied to spiny dogfish from 2008 to 2009 to collect data on depth (pressure), temperature and ambient light level (for position estimation). Deployments were conducted in Canada on commercial fishing vessels from August to October. Wildlife Computers PSAT Mk10 (N=6) were used and 3 of 6 tags reported. One tag was found washed up on shore and was returned. The spiny dogfish tagged ranged in size from 80 cm to 96 cm Fork Length (curved); all 6 were female. Time at liberty ranged from 75 – 234 days and the 43 tags that reported remained on the sharks for the programmed duration. Raw data transmitted from the PSAT’s after release was processed through Wildlife Computers software (GPE3) to get summary files, assuming a maximum swimming speed of 2m/s, NOAA OI SST V2 High Resolution data set for SST reference and ETOPO1-Bedrock dataset for bathymetry reference. The maximum likelihood position estimates are available in .csv and .kmz format and depth and temperature profiles are also in .csv format. Other tag outputs as well as metadata from the deployments can be obtained upon request from: warren.joyce@dfo-mpo.gc.ca or heather.bowlby@dfo-mpo.gc.ca.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Bottom water temperature and salinity in the Estuary and Gulf of St.Lawrence

Gridded temperature and salinity of the Estuary and Gulf of St. Lawrence bottom waters including shallow waters. Data are a result of a 3D interpolation on a 1km x 1km x bottom depth grid. They mostly come from the 2 multidisciplinary surveys but all the available CTD data sampled in August and September were used.
 
The dataset contains 24 layers: one layer per year per variable from 2014 to 2023, two layers of temperature and salinity climatologies and two layers of anomalies for the last year.

Purpose

Since 1990, the Department of Fisheries and Oceans has been conducting an annual multidisciplinary survey in the Estuary and northern Gulf of St. Lawrence using a standardized protocol. In the southern Gulf of St. Lawrence, these bottom trawl surveys has been carrying out each September since 1971. These missions are an important source of information about the status of the marine ressources.

The objectives of the surveys are multiple: 
to estimate the abundance and biomass of groundfish and invertebrates, to identify the spatial distribution and biological characteristics of these species, to monitor the biodiversity of the Estuary and Gulf and finally, to describe the environmental conditions observed in the area at the moment of the sampling.

The southern Gulf surveys are realized using the following standardized protocol:
Hurlbut,T. and D.Clay (eds) 1990. Protocols for Research Vessel Cruises within the Gulf Region (Demersal Fish) (1970-1987). Can. MS Rep. Fish. Aquat. Sci. No. 2082: 143p.

The sampling protocols used for the Estuary and northern Gulf surveys are described in details in the following publications:

Bourdages, H., Archambault, D., Bernier, B., Fréchet, A., Gauthier, J., Grégoire, F., Lambert, J., et Savard, L. 2010. Résultats préliminaires du relevé multidisciplinaire de poissons de fond et de crevette d’août 2009 dans le nord du golfe du Saint-Laurent. Rapp. stat. can. sci. halieut. aquat. 1226 : xii+ 72 p. 

Bourdages, H., Archambault, D., Morin, B., Fréchet, A., Savard, L., Grégoire, F., et Bérubé, M. 2003. Résultats préliminaires du relevé multidisciplinaire de poissons de fond et de crevette d’août 2003 dans le nord du golfe du Saint-Laurent. Secr. can. consult. sci. du MPO. Doc. rech. 2003/078. vi + 68 p.

Annual reports are available at the Canadian Science Advisory Secretariat (CSAS), (http://www.dfo-mpo.gc.ca/csas-sccs/index-eng.htm).

Bourdages, H., Brassard, C., Desgagnés, M., Galbraith, P., Gauthier, J., Légaré, B., Nozères, C. and Parent, E. 2017. Preliminary results from the groundfish and shrimp multidisciplinary survey in August 2016 in the Estuary and northern Gulf of St. Lawrence. DFO Can. Sci. Advis. Sec. Res. Doc. 2017/002. v + 87 p.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Zooplankton biomass at the Atlantic Zone Monitoring Program (AZMP)-Quebec’s stations.

Mean zooplankton biomass (g/m³) at the 46 stations grouped into Atlantic Zone Monitoring Program (AZMP) transects under Quebec region responsibility.

Mean zooplankton wet weights of the last ten years are displayed as 4 layers in june (2013-2022, 2020 not sampled) and 4 layers in november (2013-2022). The 4 layers stand for total zooplankton, mesozooplankton, macrozooplankton and euphausiids.  

The attached files contain the biomass data: a .png file for each station, showing time series of biomass for the total zooplankton and the euphausiids, and a .csv file containing the data themselves (columns : Station,Date(UTC), Latitude, Longitude, Sounding(m), Depth_max/Profondeur_max(m), Depth_min/Profondeur_min(m), Mesozooplankton/Mésozooplancton(g/m³), Macrozooplankton/Macrozooplancton(g/m³), Zooplankton/Zooplancton(g/m³), Euphausiids/Euphausides(g/m³)).

Purpose

The Atlantic Zone Monitoring Program (AZMP) was implemented in 1998 with the aim of increasing the Department of Fisheries and Oceans Canada’s (DFO) capacity to detect, track and predict changes in the state and productivity of the marine environment.

The AZMP collects data from a network of stations composed of high-frequency monitoring sites and cross-shelf sections in each following DFO region: Québec, Gulf, Maritimes and Newfoundland. The sampling design provides basic information on the natural variability in physical, chemical, and biological properties of the Northwest Atlantic continental shelf. Cross-shelf sections sampling provides detailed geographic information but is limited in a seasonal coverage while critically placed high-frequency monitoring sites complement the geography-based sampling by providing more detailed information on temporal changes in ecosystem properties.

In Quebec region, two surveys (46 stations grouped into transects) are conducted every year, one in June and the other in autumn in the Estuary and Gulf of St. Lawrence. Historically, 3 fixed stations were sampled more frequently. One of these is the Rimouski station that still takes part of the program and is sampled about weekly throughout the summer and occasionally in the winter period.

Annual reports (physical, biological and a Zonal Scientific Advice) are available from the Canadian Science Advisory Secretariat (CSAS), (http://www.dfo-mpo.gc.ca/csas-sccs/index-eng.htm).

Devine, L., Scarratt, M., Plourde, S., Galbraith, P.S., Michaud, S., and Lehoux, C. 2017. Chemical and Biological Oceanographic Conditions in the Estuary and Gulf of St. Lawrence during 2015. DFO Can. Sci. Advis. Sec. Res. Doc. 2017/034. v + 48 pp.


Supplemental Information

Zooplankton is sampled by bottom-surface vertical net tow with a conic 202 µm net and preserved in a 4% solution of buffered formaldehyde according to AZMP sampling protocol:

Mitchell, M. R., Harrison, G., Pauley, K., Gagné, A., Maillet, G., and Strain, P. 2002. Atlantic Zonal Monitoring Program sampling protocol. Can. Tech. Rep. Hydrogr. Ocean Sci. 223: iv + 23 pp.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Pelagic Shark Satellite Tag data - Greenland Shark

The greenland shark (Somniosus microcephalus), is a species found in Atlantic Canadian waters which is occasionally encountered in commercial fisheries. Pop-up Satellite Archival Tags (PSAT) from Wildlife Computers were applied to greenland sharks from 2006 to 2009 to collect data on depth (pressure), temperature and ambient light level (for position estimation). Deployments were conducted in Canada on commercial vessels throughout the year and in Cumberland Sound (Pangirtung) on a scientific expedition in April 2008. A variety of tag models were deployed: PAT 4 (n=1) and Mk10 (N=15) and 14 of 16 tags reported. Greenland sharks tagged ranged in size from 250 cm to 549 cm Total Length (curved); 3 were female, 9 were male, and 4 were of unknown sex. Time at liberty ranged from 48 – 350 days and 9 tags remained on the sharks for the programmed duration. Raw data transmitted from the PSAT’s after release was processed through Wildlife Computers software (GPE3) to get summary files, assuming a maximum swimming speed of 2m/s, NOAA OI SST V2 High Resolution data set for SST reference and ETOPO1-Bedrock dataset for bathymetry reference. The maximum likelihood position estimates are available in .csv and .kmz format and depth and temperature profiles are also in .csv format. Other tag outputs as well as metadata from the deployments can be obtained upon request from: warren.joyce@dfo-mpo.gc.ca or heather.bowlby@dfo-mpo.gc.ca.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Summer Model Outputs and Observations in Discovery Islands, British Columbia

This dataset contains the modelled and observed data used in the publication "Fjord circulation permits persistent subsurface water mass in a long, deep mid-latitude inlet" by Laura Bianucci et al., DFO Ocean Sciences Division, Pacific Region (published in the journal Ocean Science in 2024). An application of the Finite Volume Community Ocean Model (FVCOM v4.1) was run from May 24 to June 27, 2019 in the Discovery Islands region of British Columbia, Canada. Observed temperature and salinity profiles available in this area during this time period are included in the dataset, along with the modelled values at the same times and locations.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Commercial catches sampling program in the Estuary and Gulf of St. Lawrence – waved whelk (Buccinum undatum)

Summary
The Quebec region of the Department of Fisheries and Oceans (DFO) is responsible for the assessment of several fish and invertebrate stocks exploited in the Estuary and the northern Gulf of St. Lawrence. The commercial catches sampling program is one of the sources of information used to complete these assessments. The data collected by this program, at wharf or at sea, offers among other things the advantage of a relatively large spatio-temporal coverage and provides some of the necessary knowledge to assess the demography and the structure of the exploited populations. This program is implemented by specialized DFO staff whose main mandate is to collect biological data on groundfish, pelagic fish and marine invertebrate species that are commercially exploited in the various marine communities.

Data
This dataset on the waved whelk (Buccinum undatum) includes the metadata, sample weight, shell height, the sex and the number of specimens measured. This dataset covers the period of 1987 to present. In order to protect the confidentiality of the sources, some informations (such as those concerning the vessel) have been excluded and others (such as the date of capture) have been simplified. Entries where there was only one vessel in a fishing area for a given year were also excluded. Further information including the fishing areas coordinates can be found by clicking on the «Atlantic and Arctic commercial fisheries» and «Fishing areas» links below.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada