AndreaBozzo/ceres-open-data-index huggingface dataset:
Northumberland Strait Multi-species Trawl Survey Data

PURPOSE:
The primary objective of this survey is to obtain an index of the abundance and biomass of American lobster (Homarus americanus) in the Northumberland Strait. This research survey also provides fisheries-independent information for all of the species captured by the trawl.

DESCRIPTION:
Catch weight, length frequencies, and biological information for crustaceans and fish caught during the annual July-August research vessel trawl survey in Northumberland Strait (NAFO Division 4T). Abundance indices and spatial distribution patterns of commercial and non-commercial crustaceans and other groundfish.
            
PARAMETERS COLLECTED:
The full catch is sorted to species, or lowest taxonomic group possible, and weighed. For lobster, carapace length, sex and carapace condition (i.e. stage of moult) are recorded. For female lobster, the presence or absence of eggs is noted and, starting in 2010, the stage of development of the eggs (i.e. new or old) when present was also recorded. Similarly, for crabs, the carapace width, sex and carapace condition (i.e. stage of moult) is recorded as is the presence or absence of eggs (for females). Fish sampling varied over the years but, starting in 2005, length has been recorded for all fish captured.

For large catches, the complete catch is sorted and weighed, but sub-sampling, by species, is used for the other measurements.

NOTES ON QUALITY CONTROL:
Data are checked for irregularities.

SAMPLING METHODS:
The Northumberland Strait multi-species survey began in 2001 using a stratified random sampling plan. A random selection of sampling sites within the study area is now used. Sampling is completed annually over a 4-week period in July and August. One hundred ten (110) stations are sampled in Northumberland Strait in water depths greater than 4 m at the lowest normal tide. The survey has employed a 286 Rockhopper trawl for all years from 2001 to 2018, except in 2010 and 2011, when a Nephrops trawl was used. In 2019, a new trawl (called the Northumberland trawl) was used in addition to the Rockhopper trawl. The Northumberland trawl is similar to the 286 Rockhopper trawl, but with a smaller footgear and smaller mesh sizes.  

At each station, the trawl is towed for a set period of time (recently 15 minutes with the rockhopper trawl and 10 minutes with the Northumberland trawl).

USE LIMITATION:
To ensure scientific integrity and appropriate use of the data, we would encourage you to contact the data custodian.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Fish Health Database

The Fish Pathology Program (FPP) located at the Pacific Biological Station in Nanaimo has been assessing the health of aquatic animals since the early 1970’s. Utilizing traditional diagnostic methods, the FPP has supported internal and external clients to provide clinical data and management advice on the health of aquatic animals. 

The dataset contains information from diagnostic fish health cases coming from the Salmonid Enhancement Program, Research, Public and I&T submissions. Data contained in the database includes pathogen findings from submitted cases from all of the Pacific Region.

The publication of The Fish Health Database will comply with public release recommendations documented in recommendation twenty two, made in volume three of the Final Report (October 2012) submitted by the Cohen Commission of Inquiry into the Decline of the Sockeye Salmon in the Fraser River.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Northeast Pacific Monthly-Mean Ocean Current Climatology (April - September)

This dataset provides 1/36-degree monthly-mean ocean current climatology (April - September) in the Northeast Pacific. The climatological fields are derived from hourly ocean currents for the period from 1993 to 2020, simulated using a high-resolution Northeast Pacific Ocean Model (NEPOM).

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Fish Habitat Assessment Output from Bay of Quinte Suitability Modelling: High Water Level (75.4m ASL) - Juvenile/Adult Habitat - High Vegetation Association Species (All Thermal Guilds)

Fish Habitat Assessment Output: 5 of 16

High Water Level (75.4m ASL) - Juvenile/Adult Habitat - High Vegetation Association Species (All Thermal Guilds)

Habitat suitability was assessed for the Bay of Quinte Area of Concern, at a 3 m grid resolution, using the Habitat Ecosystem Assessment Tool (HEAT), temperature algorithms, vegetation models, and water level input. Habitat classifications were based on three variables: depth (elevation), vegetation, and substrate; and modified by temperature suitabilities. The final suitability maps were based on documented habitat and temperature associations for the fish in the area. Different life stages (spawning requirements, nursery habitat, adult habitat) were modeled for the years of 1972-2011. Suitability values were scaled from 0 (not suitable) to 1 (highly suitable) and converted to suitability classes of very low, low, medium, and high. The final maps for each guild – life stage combination are maximum suitability values from the 39-year period modelled.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Eastern Canada Commercial Fishing

Dataset of species/gear type commercial fisheries from 2014 to 2023 in the Eastern Canada Regions. Only fish harvested from the NL, Maritimes, Gulf, Quebec and Eastern Arctic regions are included (Species Sought).

The data was obtained from Statistical Services, Fisheries and Oceans Canada (DFO) and consists of commercial species/gear type landings data from 2014 to 2023 taken from Northwest Atlantic Fisheries Organization (NAFO) Subareas 0, 2, 3, 4 and 5 and fished in the NL, Maritimes, Gulf, Quebec and Eastern Arctic regions. The layer was created by overlaying a 2 minute hexagonal grid (approx. 10km2 cell) on species/gear type commercial fisheries point data and summing the total landings by weight reported for each cell over the ten year period. Therefore, the value of each grid cell is equal to the total species/gear type landings in kg from 2014 to 2023 for the area, and may represent many fishing events from several vessels over the ten year period. All landings are from Canadian vessels and does not include information pertaining to international fishing vessels (i.e., St. Pierre). Individuals should exercise caution when interpreting this data. Data has not been altered and is mapped from the original logbook entry for each record prior to amalgamation. Data may contain errors such as inaccurate or nonviable coordinates, landed weights and/or species identification. For example, cases of fishing events reported in a NAFO Division with corresponding coordinates falling outside that particular NAFO Division or fishing events which appear to be located on a land mass due to rounding errors in the original entries. Such cases were excluded from the dataset. Only one location is given for each fishing event; therefore, a fishing activity that would normally cover a large area (i.e., trawling) is only shown in a single location. Some species may not include all records or locations where activity is taking place due to regional differences in permissions for mapping, or because the fishery is only partially georeferenced (e.g. Lobster). The locations/areas shown should only be used as an estimation of fishing intensity and a general guide of where particular species/gear type fishing occurs. This dataset has been privacy screened to comply with the Government of Canada's privacy policy. Privacy assessments were conducted to identify NAFO unit areas containing data with less than five vessel IDs, license IDs and fisher IDs. If this threshold was not met, catch weight locations have been withheld from these statistical areas to protect the identity or activity of individual vessels or companies. In some instances, permissions were obtained to map species or gears with a limited number of vessels, licenses, or fisher ids. The withheld areas are indicated by the unit area that has been removed and given a weight of -9999.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Bowhead whale sightings made on 24-25 July 1992 in the Beaufort Sea and Amundsen Gulf

This record contains  data on bowhead whale locations  reported in Harwood, L.A. and P. Norton. 1996. Aerial survey data from the southeast Beaufort Sea, Mackenzie River estuary and west. Amundsen Gulf, July 1992. Canadian Data Report of Fisheries and Aquatic Sciences No. 964

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Beluga whale critical habitat in the Saguenay River and the St. Lawrence Estuary

The Beluga whale critical habitat, which includes the Upper Estuary, the Saguenay River up to Sainte-Marguerite Bay, and the southern channel of the Lower Estuary, supports the vital functions of calving and rearing of the young.

Due to the lack of information, studies are planned in the near future to increase knowledge of the species. Critical habitat actual limitations could change someday.

Purpose

The beluga (Delphinapterus leucas) population in the St. Lawrence Estuary was greatly reduced by hunting, which was finally banned in the St. Lawrence in 1979. In May 2005, this beluga population was officially listed as a threatened species on SARA’s List of Wildlife Species at Risk.

Additional Information

St. Lawrence beluga critical habitat is identified using the best available information.  All the available information on its prey, seasonal distribution, use and characteristics of its habitat has been reviewed by Mosnier (2010). This literature review was used to produce a science advisory report reviewed by marine mammal experts. Beluga whale critical habitat has been identified with the information and the scientific advice, using the area of occupancy approach and corresponds to the summer distribution of groups made up of adults and new-born calves and juveniles.

Mosnier, A., Lesage, V., Gosselin, J.-F., Lemieux Lefebvre, S., Hammill, M. O., Doniol-Valcroze, T. 2010. Information relevant to the documentation of habitat use by St. Lawrence beluga (Delphinapterus leucas), and quantification of habitat quality. DFO Can. Sci. Advis. Sec., Res. Doc. 2009/098. iv + 35 p.

DFO. 2012. Recovery Strategy for the beluga whale (Delphinapterus leucas) St. Lawrence Estuary population in Canada. Species at Risk Act Recovery Strategy Series. Fisheries and Oceans Canada, Ottawa. 88 pp + X pp.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Snow Crab Collaborative Post-season Trap Survey

This project was completed by the Shellfish Section in the Newfoundland and Labrador Science Branch of Fisheries and Oceans Canada (DFO), in collaboration with industry partners. The Coastal Environmental Baseline program supported the Placentia Bay portion of project work for an ongoing industry-DFO collaborative post-season trap survey for Snow Crab that was initiated in 2003 and has occurred each year. This survey is conducted by Snow Crab harvesters accompanied by at-sea observers and takes place in NAFO Divisions 2J3KLNOP4R. Historically the survey focused on commercial fishing grounds but began transitioning to a partly random stratified design in 2017. Since 2018, approximately 50% of survey stations are randomly allocated while 50% remain fixed. At each station, six (for inshore stations) or ten (for offshore stations) commercial traps are set in a fleet. To gather data on non-commercial sized Snow Crab, including females, many fleets also include one small-mesh trap. The coverage of small-mesh traps has been expanding in recent years with the aim of one small-mesh trap for every station in the coming years. Biological sampling is undertaken on at least one commercial trap and the small-mesh trap at each station. 
The data from this survey is incorporated into the annual stock assessment for Snow Crab in the Newfoundland and Labrador region.  This record contains trap locations for Placentia Bay, and information on the types of data collected. 

More detailed information can be found in Pantin et al. (2022).
https://publications.gc.ca/collections/collection_2023/mpo-dfo/fs70-5/Fs70-5-2022-076-eng.pdf

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Lumpfish potential spawning site in the Gulf of St. Lawrence

Identification of a potential spawning site for lumpfish during an ichtyofauna inventory conducted in the eelgrass in Sept-Îles bay by Calderón (1996).

Purpose:

The 1996 document by par Isabel Calderón has been achieved by the "Corporation de protection de l'environnement de Sept-Îles" with the support of Department of Fisheries and Oceans (DFO) as part of the "Biodiversity" program, St. Lawrence Vision 2000 (Canada).

Source:

Calderón, I. 1996. Caractérisation des habitats du poisson de la baie de Sept-Îles - Phase II. Corporation de protection de l'environnement de Sept-Îles. 37 pages.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Kernel Density Analyses of Coral and Sponge Catches from Research Vessel Survey Data (2016)

Kernel density estimation (KDE) utilizes spatially explicit data to model the distribution of a variable of interest. It is a simple non-parametric neighbour-based smoothing function that relies on few assumptions about the structure of the observed data. It has been used in ecology to identify hotspots, that is, areas of relatively high biomass/abundance, and in 2010 was used by Fisheries and Oceans Canada to delineate significant concentrations of corals and sponges. The same approach has been used successfully in the Northwest Atlantic Fisheries Organization (NAFO) Regulatory Area. Here, we update the previous analyses with the catch records from up to 5 additional years of trawl survey data from Eastern Canada, including the Gulf of Saint Lawrence. We applied kernel density estimation to create a modelled biomass surface for each of sponges, small and large gorgonian corals, and sea pens, and applied an aerial expansion method to identify significant concentrations of these taxa. We compared our results to those obtained previously and provided maps of significant concentrations as well as point data co-ordinates for catches above the threshold values used to construct the significant area polygons. The borders of the polygons can be refined using knowledge of null catches and species distribution models of species presence/absence and/or biomass.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Commercial catches sampling program in the Estuary and Gulf of St. Lawrence – green urchin (Strongylocentrotus droebachiensis)

Summary
The Quebec region of the Department of Fisheries and Oceans (DFO) is responsible for the assessment of several fish and invertebrate stocks exploited in the Estuary and the northern Gulf of St. Lawrence. The commercial catches sampling program is one of the sources of information used to complete these assessments. The data collected by this program, at wharf or at sea, offers among other things the advantage of a relatively large spatio-temporal coverage and provides some of the necessary knowledge to assess the demography and the structure of the exploited populations. This program is implemented by specialized DFO staff whose main mandate is to collect biological data on groundfish, pelagic fish and marine invertebrate species that are commercially exploited in the various marine communities.

Data
This dataset on the green urchin (Strongylocentrotus droebachiensis) includes the metadata, sample weight, the test width and the number of specimens measured. This dataset covers the periods of 1995, 1997-1999 and 2003 to present. In order to protect the confidentiality of the sources, some informations (such as those concerning the vessel) have been excluded and others (such as the date of capture) have been simplified. Entries where there was only one vessel in a fishing area for a given year were also excluded. Further information including the fishing areas coordinates can be found by clicking on the «Atlantic and Arctic commercial fisheries» and «Fishing areas» links below.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Commercial catches sampling program in the Estuary and Gulf of St. Lawrence - American plaice data (Hippoglossoides platessoides)

Summary
The Quebec region of the Department of Fisheries and Oceans (DFO) is responsible for the assessment of several fish and invertebrate stocks exploited in the Estuary and the northern Gulf of St. Lawrence. The commercial catches sampling program is one of the sources of information used to complete these assessments. The data collected by this program, at wharf or at sea, offers among other things the advantage of a relatively large spatio-temporal coverage and provides some of the necessary knowledge to assess the demography and the structure of the exploited populations. This program is implemented by specialized DFO staff whose main mandate is to collect biological data on groundfish, pelagic fish and marine invertebrate species that are commercially exploited in the various marine communities.

Data
This dataset on the American plaice (Hippoglossoides platessoides) includes the metadata, sample weight, fish length, the sex and the number of specimen measured. This dataset covers the periods of 1989-2002, 2006-2008 and 2016-2018. In order to protect the confidentiality of the sources, some informations (such as those concerning the vessel) have been excluded and others (such as the date of capture) have been simplified. Entries where there was only one vessel in a fishing area for a given year were also excluded. Further information including the fishing areas coordinates can be found by clicking on the «Atlantic and Arctic commercial fisheries» and «Fishing areas» links below.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Surface temperature and salinity - Shipboard Thermosalinographs

1999 to 2023 surface temperature and salinity measured along the track of commercial ships, mostly between Montreal (Quebec) and St. John's (Newfoundland).

Monitoring of surface water conditions in the Estuary and Gulf of St. Lawrence is carried out with different complementary methods such as thermosalinographs (TSG) installed on commercial ships. These ships are sailing all year long from Montreal to St. John’s, one round trip per week, and are sampling water near the surface (3 to 8 meters deep) to determine the temperature and salinity all along the route.

Purpose

The recorded data are used as input to numerical forecasting models for sea ice conditions and as a monitoring tool for the Gulf of St. Lawrence.

Annual reports are available at the Canadian Science Advisory Secretariat (CSAS), (http://www.dfo-mpo.gc.ca/csas-sccs/index-eng.htm). Galbraith, P.S., Chassé, J., Caverhill, C., Nicot, P., Gilbert, D., Lefaivre, D. and Lafleur, C. 2018. Physical Oceanographic Conditions in the Gulf of St. Lawrence during 2017. DFO Can. Sci. Advis. Sec. Res. Doc. 2018/050. v + 79 p.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Commercial catches sampling program in the Estuary and Gulf of St. Lawrence – redfish (Sebastes sp.)

Summary
The Quebec region of the Department of Fisheries and Oceans (DFO) is responsible for the assessment of several fish and invertebrate stocks exploited in the Estuary and the northern Gulf of St. Lawrence. The commercial catches sampling program is one of the sources of information used to complete these assessments. The data collected by this program, at wharf or at sea, offers among other things the advantage of a relatively large spatio-temporal coverage and provides some of the necessary knowledge to assess the demography and the structure of the exploited populations. This program is implemented by specialized DFO staff whose main mandate is to collect biological data on groundfish, pelagic fish and marine invertebrate species that are commercially exploited in the various marine communities.

Data
This dataset on the redfish (Sebastes sp.) includes the metadata, sample weight, fish length, the sex and the number of specimens measured. This dataset covers the periods of 1980-1996, 1999-2013, 2015-2016 and 2019. In order to protect the confidentiality of the sources, some informations (such as those concerning the vessel) have been excluded and others (such as the date of capture) have been simplified. Entries where there was only one vessel in a fishing area for a given year were also excluded. Further information including the fishing areas coordinates can be found by clicking on the «Atlantic and Arctic commercial fisheries» and «Fishing areas» links below.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Active Commercial Shipping Anchorages in Pacific Canada

This is a point layer of the names and locations of the actively used commercial shipping anchorages in British Columbia. These point locations were manually compiled from available port guides and documents. The objective of this dataset is to provide a consolidated file containing all active commercial shipping anchorage locations as there has been a lack of consistency between different sources due to variations in names and locations in different datasets and historical changes to anchorage locations.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
A substrate classification for the Inshore Scotian Shelf and Bay of Fundy, Maritimes Region

A coastal surficial substrate layer for the coastal Scotian Shelf and Bay of Fundy. To create the layer, previous geological characterizations from NRCan were translated into consistent substrate and habitat characterizations; including surficial grain size and primary habitat type. In areas where no geological description was available, data including digital elevation models and substrate samples from NRCan, CHS and DFO Science were interpreted to produce a regional scale substrate and habitat characterization. Each characterization in the layer was given a ranking of confidence and original data resolution to ensure that decision makers are informed of the quality and scale of data that went into each interpretation.

Cite this data as: Greenlaw, M., Harvey, C. Data of: A substrate classification for the Inshore Scotian Shelf and Bay of Fundy, Maritimes Region. Published: March 2022. Coastal Ecosystems Science Division, Fisheries and Oceans Canada, St. Andrews, N.B. https://open.canada.ca/data/en/dataset/f2c493e4-ceaa-11eb-be59-1860247f53e3

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada