AndreaBozzo/ceres-open-data-index huggingface dataset:
Seasonal aragonite saturation state climatology of the Canadian Pacific Exclusive Economic Zone from BCCM model (1993-2020)

Description:
Seasonal mean aragonite saturation state from the British Columbia continental margin model (BCCM) were averaged over the 1993 to 2020 period to create seasonal mean climatology of the Canadian Pacific Exclusive Economic Zone.

Methods:
Aragonite saturation states at up to forty-six linearly interpolated vertical levels from surface to 2400 m and at the sea bottom are included. Spring months were defined as April to June, summer months were defined as July to September, fall months were defined as October to December, and winter months were defined as January to March. The data available here contain raster layers of seasonal aragonite saturation state climatology for the Canadian Pacific Exclusive Economic Zone at 3 km spatial resolution and 47 vertical levels.

Uncertainties:
Model results have been extensively evaluated against observations (e.g. altimetry, CTD and nutrient profiles, observed geostrophic currents), which showed the model can reproduce with reasonable accuracy the main oceanographic features of the region including salient features of the seasonal cycle and the vertical and cross-shore gradient of water properties. However, the model resolution is too coarse to allow for an adequate representation of inlets, nearshore areas, and the Strait of Georgia.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Seasonal Climatologies of the Northeast Pacific Ocean (1980-2010)

Description:
Seasonal climatologies (temperature, salinity, and sigma-t) of the Northeast Pacific Ocean were computed from historical observations including all available conductivity-temperature-depth (CTD), bottle, expendable bathy-thermograph (XBT), and Argo data in NOAA (http://www.argo.ucsd.edu/), Marine Environmental Data Service (MEDS), and Institute of Ocean Sciences archives over 1980 to 2010 period in spatial resolution ranging from approximately 100m to 70km.

Methods:
Calculations, including smooth and interpolation, were carried out in sixty-five subregions and up to fifty-two vertical levels from surface to 5000m. Seasonal averages were computed as the median of yearly seasonal values. Spring months were defined as April to June, summer months were defined as July to September, fall months were defined as October to December, and winter months were defined as January to March.

Uncertainties:
Uncertainties are introduced when quality controlled observational data are spatially interpolated to varying distances from the observation point. Climatological averages are calculated from these interpolated values.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Monthly Satellite Chlorophyll-a Climatology of the Canadian Pacific Exclusive Economic Zone (2003-2020) - 4 km Resolution

Description:
Chlorophyll-a concentration (a proxy for phytoplankton biomass) was retrieved from the MODIS instrument on the Aqua satellite, with data distributed by the NASA Ocean Biology Processing Group, and averaged into monthly climatological composites. The data span the years 2003-2020 and this record includes data at 4 km pixel resolution.

Methods:
MODIS-Aqua Chlorophyll-a (Chl-a) was acquired from the NASA Ocean Biology Processing Group at processing Level-3 (version 2018), 4-km resolution, where Chl-a concentration was calculated using the OC3/OCI method. The months of January and December were excluded from this dataset, as data in the winter months at higher latitudes are missing due to low sun angle preventing acquisition. The monthly geometric mean value at all pixels was calculated for individual years, then the geometric mean and geometric standard deviation factor of chlorophyll-a were calculated by month from these images. These methods of calculating mean and standard deviation were used due to the log-normal distribution of chlorophyll-a. The geometric standard deviation is a unitless factor, where the lower bound is the ratio of the geometric mean and geometric standard deviation, and the upper bound is the multiplication of the two. In addition to the geometric mean and geometric standard deviation factor the number of occurrences of valid data at each pixel over the period of observation were calculated. Pixels with fewer than two occurrences over the entire period of observation were removed from these maps, and set to a NaN value in the tif files. All resulting rasters were cropped to the Canadian Exclusive Economic Zone and assigned to the NAD83 geographic coordinate reference system (EPSG:4269), and have a final pixel resolution of approximately 0.0417 degrees. The monthly geometric mean, monthly geometric standard deviation factor, and number of occurrences for all pixels are provided.

Data Sources:
NASA Ocean Biology Processing Group. (2017). MODIS-Aqua Level 2 Ocean Color Data Version R2018.0. NASA Ocean Biology Distributed Active Archive Center. https://doi.org/10.5067/AQUA/MODIS/L2/OC/2018

Uncertainties:
Satellite values have been evaluated against global datasets, and datasets of samples in the Pacific region (see references). However, uncertainties are introduced when averaging together images over time as each pixel has a differing number of observations. Short-lived or spatially limited events may be missed.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Satellite derived surface chlorophyll-a and suspended particulate matter in the Bay of Fundy from 2003 to 2021

This dataset accompanies the open access article "Improving satellite chlorophyll-a retrieval in the turbid waters of the Bay of Fundy, Canada" published in Estuaries and Coasts (https://doi.org/10.1007/s12237-024-01334-x). A full methods description is provided in the article. Briefly, we processed daily satellite data from the MODerate-resolution Imaging Spectroradiometer (MODIS) on the Aqua satellite from 2003 to 2021 at 300 m resolution to understand and quantify spatial and temporal trends in chlorophyll-a concentration (chl-a, a measure of phytoplankton biomass), and suspended particulate matter concentration (SPM)  in the Bay of Fundy surface waters. This dataset provides the median yearly and seasonal climatology of chl-a (mg m-3 ) and SPM (g m-3) from 2003 to 2021 as geotiff layers. Here winter is defined as January to March, spring as April to June, summer as July to September, and fall as October to December. Chl-a was calculated with the OCX-SPMCor  algorithm and SPM was calculated with the Nechad et al 2010 algorithm.

Cite this data as: Wilson, K., Hilborn, A., Clay, S., Devred, E. Data of
Satellite derived surface chlorophyll-a and suspended particulate matter in the Bay of Fundy from 2003 to 2021. 
Published February 2024. Ocean Ecosystem Science Division, Fisheries and Oceans Canada, Dartmouth, N.S. 
https://open.canada.ca/data/en/dataset/272f5cf1-52bb-416b-b92a-8bc9384fc24d

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Federal Marine Bioregions

The spatial planning framework for Canada's national network of Marine Protected Areas (MPAs) is comprised of 13 ecologically defined bioregions that cover Canada's oceans and the Great Lakes. Note that the geographic boundaries for the bioregions are fuzzy and may change based on ecosystemic conditions.

Detailed descriptions and discussions on the federal network of marine bioregions can be found in: 

- DFO. 2009. Development of a Framework and Principles for the Biogeographic Classification of Canadian Marine Areas. DFO Can. Sci. Advis. Sec. Sci. Advis. Rep. 2009/056 (http://www.dfo-mpo.gc.ca/csas-sccs/publications/sar-as/2009/2009_056-eng.htm);

- DFO. 2010. Proceedings of a National Science Advisory Process to Provide Guidance on the Development of a Framework and Principles for the Biogeographic Classification of Canadian Marine Areas; 15-16 June 2009. DFO Can. Sci. Advis. Sec. Proceed. Ser. 2009/039. (http://www.dfo-mpo.gc.ca/csas-sccs/publications/pro-cr/2009/2009_039-eng.htm); and 

- National Framework for Canada's Network of Marine Protected Areas (http://www.dfo-mpo.gc.ca/oceans/publications/mpanf-cnzpm/page01-eng.html).

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Northwestern Ontario Lake Size Series (NOLSS) lakes- water chemistry data.

This dataset includes water chemistry data collected from five  of the six lakes as part of the Northwestern Ontario Size Series project in 1987 and 1990 including species of nitrogen and phosphorus, carbon, chlorophyll a, conductivity, soluble reactive silica, chloride, sulphate, conductivity, sodium, potassium, magnesium, calcium, pH, alkalinity and organic acids

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Line P Climatology (1956-2012)

Climatological monthly-mean temperature and salinity data were computed for each of the 27 Line P stations (https://www.dfo-mpo.gc.ca/science/data-donnees/line-p/index-eng.html). For any particular station, data were accepted as belonging to that station if the location was within 10 km of the intended station (or 24km at Ocean Station Papa, P26). Data were binned by month/year over all available data for each station up to and including 2012. Hence the time interval that the mean state was computed from starts between 1956 and 1960 and ends at the end of 2012. Standard deviations were computed for each month independently and at each 5-m depth bin and were estimated as the variability between different years for the month in question.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Seasonal Temperature Climatology of the British Columbia Exclusive Economic Zone (2001-2020)

Description:
Seasonal climatologies for temperature of the Northeast Pacific Ocean were computed to cover the period 2001 to 2020. Historical observations included all available conductivity-temperature-depth (CTD), bottle and profiling floats in the NODC World Ocean Database, Marine Environmental Data Services (MEDS), Institute of Ocean Sciences Water Properties website and the Canadian Integrated Ocean Observing System (CIOOS Pacific).

Methods:
Interpolation was carried out in up to fifty-two vertical levels from surface to 5000m. Data-Interpolating Variational Analysis (DIVA) was used for spatial interpolation for all years within each season and estimates projected onto a consistent grid. The average of the grid nodes was calculated to obtain the seasonal climatology. DIVA was used again on the final climatology followed by a median filter and a 5-point smoother. Spring months were defined as April to June, summer months were defined as July to September, fall months were defined as October to December, and winter months were defined as January to March. The data available here contain raster layers of seasonal temperature climatologies for the Canadian Pacific Exclusive Economic Zone (EEZ), a subset of seasonal climatologies of the Northeast Pacific Ocean, in high spatial resolution of 1/300 degree.

Data Sources:
NODC, MEDS, IOS and CIOOS Pacific Data.

Uncertainties:
Uncertainties are introduced when quality controlled observational data are spatially interpolated to varying distances from the observation point. Climatological averages are calculated from these interpolated values.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
A climate risk index for marine life across the Canadian exclusive economic zone

In Canada, DFO assessments have reported a high probability of significant climate change impacts in all marine and freshwater basins, with effects increasing over time (DFO 2012a, 2012b), while climate projections indicate that ecosystems and fisheries will be disrupted into the foreseeable future (Lotze et al. 2019b; Bryndum-Buchholz et al. 2020; Tittensor et al. 2021; Boyce et al. 2022c). Despite its imminence, climate change is infrequently factored into Canada’s primary marine conservation strategies, such as spatial planning (O’Regan et al. 2021) or fisheries management (Boyce et al. 2021a; Pepin et al. 2022). The Climate Risk Index for Biodiversity was developed to assess climate risk for marine species in a quantitative, spatially explicit, and scalable way to better support climate-informed decision-making. It has been used to evaluate climate risks for marine life globally (Boyce et al. 2022a), regionally (Lewis et al. 2023), and for fisheries (Boyce et al. 2022c). 

These data present results from application of the CRIB framework to estimate average climate risks associated with sea surface warming across 2,959 species throughout the Canadian marine territory under contrasting future emission scenarios. In the Technical Report accompanying this data publication, we use Atlantic cod (Gadus morhua) as an example to describe the approach’s data, methods, and outputs, and to transparently and tangibly show how it quantifies risk and can inform and support climate-informed decision-making in Canada. 



Cite this data as: Boyce, D., Greenan, B., Shackell, N. Data of:
A climate risk index for marine life across the Canadian exclusive economic zone.
Published: January 2024. Ocean Ecosystems Science Division, Fisheries and Oceans Canada, Dartmouth, N.S.
https://open.canada.ca/data/en/dataset/2a0b3298-2bcc-49a0-a745-af56ed0462f1

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Seasonal nitrate climatology of the Canadian Pacific Exclusive Economic Zone from BCCM model (1981-2010)

Description:
Seasonal mean nitrate concentration from the British Columbia continental margin model (BCCM) were averaged over the 1981 to 2010 period to create seasonal mean climatology of the Canadian Pacific Exclusive Economic Zone.

Methods:
Nitrate concentrations at up to forty-six linearly interpolated vertical levels from surface to 2400 m and at the sea bottom are included. Spring months were defined as April to June, summer months were defined as July to September, fall months were defined as October to December, and winter months were defined as January to March. The data available here contain raster layers of seasonal nitrate concentration climatology for the Canadian Pacific Exclusive Economic Zone at 3 km spatial resolution and 47 vertical levels.

Uncertainties:
Model results have been extensively evaluated against observations (e.g. altimetry, CTD and nutrient profiles, observed geostrophic currents), which showed the model can reproduce with reasonable accuracy the main oceanographic features of the region including salient features of the seasonal cycle and the vertical and cross-shore gradient of water properties. However, the model resolution is too coarse to allow for an adequate representation of inlets, nearshore areas, and the Strait of Georgia.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Seasonal total phytoplankton climatology of the Canadian Pacific Exclusive Economic Zone from BCCM model (1981-2010)

Description:
Seasonal mean total phytoplankton at the surface from the British Columbia continental margin model (BCCM) were averaged over the 1981 to 2010 period to create seasonal mean surface climatology of the Canadian Pacific Exclusive Economic Zone.

Methods:
Total phytoplankton is the sum of diatoms and flagellates concentration. Spring months were defined as April to June, summer months were defined as July to September, fall months were defined as October to December, and winter months were defined as January to March. The data available here contain a raster layer of seasonal surface phytoplankton climatology for the Canadian Pacific Exclusive Economic Zone at 3 km spatial resolution.

Uncertainties:
Model results have been extensively evaluated against observations (e.g. altimetry, CTD and nutrient profiles, observed geostrophic currents), which showed the model can reproduce with reasonable accuracy the main oceanographic features of the region including salient features of the seasonal cycle and the vertical and cross-shore gradient of water properties. However, the model resolution is too coarse to allow for an adequate representation of inlets, nearshore areas, and the Strait of Georgia.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Chlorophyll-a concentration at the Atlantic Zone Monitoring Program (AZMP)-Quebec’s stations.

Chlorophyll-a (mg/m2) time series at the 3 fixed stations and 46 stations, grouped into transects, of the Atlantic Zonal Monitoring Program (AZMP) under the Quebec region responsibility.

The mean integrated chlorophyll-a data (0-100 m) of the last ten years are displayed as 2 layers, one for the June survey (2013-2022. 2020 not sampled), another for the autumn survey (2013-2022).  A third layer shows the positions of the fixed stations of the program (Anticosti Gyre, Gaspé Current and Rimouski).

Each station is linked with a .png file showing the chlorophyll-a time series and with a .csv file containing all the integrated chlorophyll-a data acquired at those stations since the beginning of the program sampling (columns : Station, Latitude, Longitude, Date(UTC), Sounding(m), Depth_min/Profondeur_min(m), Depth_max/Profondeur_max(m), Integrated_chlorophyll-a/Chlorophylle-a_intégrée(mg/m²)).


Purpose

The Atlantic Zone Monitoring Program (AZMP) was implemented in 1998 with the aim of increasing the Department of Fisheries and Oceans Canada’s (DFO) capacity to detect, track and predict changes in the state and productivity of the marine environment.

The AZMP collects data from a network of stations composed of high-frequency monitoring sites and cross-shelf sections in each following DFO region: Québec, Gulf, Maritimes and Newfoundland. The sampling design provides basic information on the natural variability in physical, chemical, and biological properties of the Northwest Atlantic continental shelf. Cross-shelf sections sampling provides detailed geographic information but is limited in a seasonal coverage while critically placed high-frequency monitoring sites complement the geography-based sampling by providing more detailed information on temporal changes in ecosystem properties.

In Quebec region, two surveys (46 stations grouped into transects) are conducted every year, one in June and the other in autumn in the Estuary and Gulf of St. Lawrence. Historically, 3 fixed stations were sampled more frequently. One of these is the Rimouski station that still takes part of the program and is sampled about weekly throughout the summer and occasionally in the winter period.

Annual reports (physical, biological and a Zonal Scientific Advice) are available from the Canadian Science Advisory Secretariat (CSAS), (http://www.dfo-mpo.gc.ca/csas-sccs/index-eng.htm).

Devine, L., Scarratt, M., Plourde, S., Galbraith, P.S., Michaud, S., and Lehoux, C. 2017. Chemical and Biological Oceanographic Conditions in the Estuary and Gulf of St. Lawrence during 2015. DFO Can. Sci. Advis. Sec. Res. Doc. 2017/034. v + 48 pp.


Supplemental Information

Water sampling for chlorophyll-a analysis (Welschmeyer 1994 method) is done from Niskin bottles according to AZMP sampling protocol:

Mitchell, M. R., Harrison, G., Pauley, K., Gagné, A., Maillet, G., and Strain, P. 2002. Atlantic Zonal Monitoring Program sampling protocol. Can. Tech. Rep. Hydrogr. Ocean Sci. 223: iv + 23 pp.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Arctic Krill (T. raschii) maximum annual density

The St. Lawrence Estuary is known as a summer foraging area for several species of marine mammals, including several species of rorquals. Among these is the blue whale, which feeds almost exclusively on euphausiids. Therefore, the abundance, distribution and local density of krill should logically be a strong explanatory variable for the distribution of blue whales. However little is known about the spatial association of blue whales with the aggregation dynamics of krill in eastern Canada. Six years of acoustic surveys, conducted in August from 2009 to 2014, were undertaken to study the medium- and small-scale distribution of krill within the northwestern Gulf of St. Lawrence and estuary. The data shows a mosaic of the maximum annual density of arctic krill (T. raschii) made from these surveys.

McQuinn, I.H., Gosselin, J.-F., Bourassa, M.-N., Mosnier, A., St-Pierre, J.-F., Plourde, S., Lesage, V., Raymond, A. 2016. The spatial association of blue whales (Balaenoptera musculus) with krill patches (Thysanoessa spp. and Meganyctiphanes norvegica) in the estuary and northwestern Gulf of St. Lawrence. DFO Can. Sci. Advis. Sec. Res. Doc. 2016/104. iv + 19 p.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Important Areas for Geography in Strait of Georgia Ecoregion

This layer details Important Areas (IAs) relevant to important geographic features in the Strait of Georgia (SOG) ecoregion. This data was mapped to inform the selection of marine Ecologically and Biologically Significant Areas (EBSA). Experts have indicated that these areas are relevant based upon their high ranking in one or more of three criteria (Uniqueness, Aggregation, and Fitness Consequences). The distribution of IAs within ecoregions is used in the designation of EBSAs.

Canada’s Oceans Act provides the legislative framework for an integrated ecosystem approach to management in Canadian oceans, particularly in areas considered ecologically or biologically significant. DFO has developed general guidance for the identification of ecologically or biologically significant areas. The criteria for defining such areas include uniqueness, aggregation, fitness consequences, resilience, and naturalness. This science advisory process identifies proposed EBSAs in Canadian Pacific marine waters, specifically in the Strait of Georgia (SOG), along the west coast of Vancouver Island (WCVI, southern shelf ecoregion), and in the Pacific North Coast Integrated Management Area (PNCIMA, northern shelf ecoregion).

Initial assessment of IAs in PNCIMA was carried out in September 2004 to March 2005 with spatial data collection coordinated by Cathryn Clarke. Subsequent efforts in WCVI and SOG were conducted in 2009, and may have used different scientific advisors, temporal extents, data, and assessment methods. WCVI and SOG IA assessment in some cases revisits data collected for PNCIMA, but should be treated as a separate effort.

Other datasets in this series detail IAs for birds, cetaceans, coral and sponges, fish, invertebrates, and other vertebrates.

Though data collection is considered complete, the emergence of significant new data may merit revisiting of IAs on a case by case basis.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada