AndreaBozzo/ceres-open-data-index huggingface dataset:
Lobster Proxy Mapping - Newfoundland and Labrador

Proxied dataset of inshore lobster commercial fishing for 2012 - 2021 in the Newfoundland and Labrador region. Only lobster harvested from the Newfoundland and Labrador region are included, based on species sought.

Commercial data for the inshore lobster fishery does not require a set of coordinates be provided for catch records. With zero georeferenced inshore lobster records, the inshore lobster fishery leaves a major data gap in one of Newfoundland and Labradors largest fisheries. The Gulf region created a lobster proxy mapping tool, which associated each commercial lobster record with the most likely 10km2 hexagon grid cell based on a number of weighted variables. The tool was adopted by the Newfoundland and Labrador region and altered to work with its own variables which include human use, habitat, accessibility, area/location, home port distance, traditional ecological knowledge and depth. Each hexagon represents the summed total weight of all records associated with a particular hexagon.

The best available commercial data used in this model is derived from landings data and may not include catches that have resulted in cash/wharf sales. As a result, there are some areas of Newfoundland and Labrador that may be under represented in this dataset where wharf sales may be high. Therefore, this dataset should be viewed as a general estimation on lobster harvesting patterns within Newfoundland and Labrador.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Near-seafloor drift transect video imagery and high-resolution digital still images from a two-year survey in support of Marine Protected Area monitoring of St. Anns Bank, Atlantic Canada

Funded under DFO's Marine Conservation Targets Program, this two-year optical imagery benthic survey captured 41 drift-camera transects in the St. Anns Bank Marine Protected Area (MPA - 4364 km2) and 4 coastal transects west of the MPA, Atlantic Canada from August 15-23, 2023 and August 08-17, 2024. High-resolution still images (n=3605) were taken periodically throughout each transect, while continuous high-definition downward- and forward-facing video (~20 hours of each) was collected simultaneously along with over 14 hours of forward-facing Go-Pro video (only in 2024). Transect and image locations were collected using an acoustic positioning operating system (Kongsberg APOS) acquired in 2024; year-one of the survey relied on the vessel position. Distance travelled and distance between still images (m) was calculated using ArcGIS tools. Field of view (FOV) was estimated by measuring the length and width of a subset of still images from year-one of the survey (n=500) in ImageJ2, using 10-cm lasers for scale. FOV was standardized for each reported altitude. Transects ranged from 319 m to 2.8 km in length (~47 km surveyed in total), collecting imagery for 12 minutes to just over 1 hour at a time, surveying depths from 17 to 144 m below chart datum. Transect locations were selected based on unique bathymetric features and benthoscapes as well as areas previously surveyed from 2009-2015.

Cite this data as: Lawton P, Teed L. Near-seafloor drift transect video imagery and high-resolution digital still images from a two-year survey in support of Marine Protected Area monitoring of St. Anns Bank, Atlantic Canada. Published January 2025. Coastal Ecosystems Science Division, Fisheries and Oceans Canada, St. Andrews, N.B.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Reproductive Ecology of Zostera marina L. (Eelgrass) Across Varying Environmental Conditions

Sexual reproduction is critical to the resilience of seagrass beds impacted by habitat degradation or environmental changes, as robust seed banks allow new shoots to establish each year. Reproductive strategies of seagrass beds range on a continuum from strictly annual to perennial, driven by local environmental conditions. We examined the reproductive dynamics of Zostera marina beds at six sites on the Atlantic coast of Canada to characterize how life history strategies are shaped by the surrounding environment. Sites were categorized as wave protected and wave exposed, where protected sites were warm, shallow, with little water movement and muddy sediments, and exposed sites were either shallow or deep, with cooler water and sandy sediments. While mixed life history strategies were evident at all sites, protected eelgrass beds exhibited both the highest and lowest sexual reproductive effort relative to exposed beds. These beds regularly experienced thermal stress, with higher temperature range and extended warm water events relative to exposed beds. The development of reproductive shoots were similar across sites with comparable Growing Degree-days at the beginning and end of anthesis, but the First Flowering Date was earlier at the protected warmer sites relative to exposed sites. With different reproductive shoot density among sites, seed production, seed retention, and seedling recruitment also varied strongly. Only one site, located in a warm, shallow and protected lagoon, contained a mixed life history population with a high reproductive effort (33.7%), strong seed bank, and high seedling establishment. However, a primarily perennial population with the lowest reproductive effort (0.5%) was identified at the warmest site, suggesting that conditions here could not support high sexual reproduction. Robustness of seed banks was strongly linked to reproductive shoot density, although the role of seed retention, germination and seedling survival require further investigation. Our study provides insights into one key aspect of seagrass resilience, and suggests that resilience assessments should include reproductive shoot density to inform their management and conservation.

Cite this data: Vercaemer B. and Wong M. Reproductive ecology of Zostera marina L. (eelgrass) across varying environmental conditions. Published: May 2022. Coastal Ecosystems Science Division, Fisheries and Oceans Canada, Dartmouth, N.S. https://open.canada.ca/data/en/dataset/56cfea6f-aeca-47ed-94ab-c519d9e63c91

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Exploratory Video-Sidescan and Echosounder Survey of Jordan Bay

Towfish (sidescan and video) and echo sounder surveys were utilized to examine bottom type and macrophyte cover within the area of two coastal marine finfish aquaculture sites, one in New Brunswick (Welch Cove) and one in Nova Scotia (Jordan Bay). Both towfish and echo sounder data could be used independently of one another. However, the towfish data were very useful for ground truthing echo sounder based classifications. All survey data were placed into a GIS which could be used to answer management questions such as the placement of cages at sites, benthic impacts and baseline conditions to determine long term changes.

Cite this data as: Vandermeulen H. Data of: Exploratory Video-Sidescan and Echosounder Survey of Jordan Bay. Published: March 2019. Coastal Ecosystems Science Division, Fisheries and Oceans Canada, Dartmouth, N.S. https://open.canada.ca/data/en/dataset/752d277f-8b3e-40c7-b99d-cfa67e69d975

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Alaska

Fisheries and Oceans Canada (DFO) has been conducting surface water trawl surveys since 1992 in the coastal waters of British Columbia, Washington, Oregon and Alaska and in the high seas of the Gulf of Alaska. Data collected in shelf and slope waters of Alaska to depths less than 400 meters are part of this larger survey series, but are limited to 1995-2011.  These surveys focused on determining the migratory patterns (1992-2002) and on the growth and physiology (2003-2011) of juvenile Pacific Salmon. The surveys had funding support from the Bonneville Power Administration as part of the 1995-2011 Canada-USA Salmon Shelf Survival Study.  The intent of that study was to monitor and evaluate the effects of ocean conditions on the distribution, migration, growth, and survival of Pacific salmon during their first ocean year, and estimate the subsequent impacts on abundance of Chinook salmon adults returning to the Columbia River system.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Benthoscape Map of German Bank

The data layer (.shp) presented is the result of an unsupervised classification method for classifying seafloor habitat on German Bank (off South West Nova Scotia, Canada). This method involves separating environmental variables derived from multibeam bathymetry (Slope, Curvature) and backscatter (principal components: Q1, Q2, and Q3) into spatial units (i.e. pixels) and classifying the acoustically separated units into 5 habitat classes (Reef, Glacial Till, Silt, Silt with Bedforms, and Sand with Bedforms) using in situ data (imagery). Benthoscape classes (synonymous to landscape classifications in terrestrial ecology) describe the geomorphology and biology of the seafloor and are derived from elements of the seafloor that were acoustically distinguishable.

Unsupervised classifications (acoustic classifications) optimized at 15 classes using Idrisi CLUSTER method (pixel based)

Number representing the benthoscape classes (CLASS) derived from in situ imagery and video (See Brown et al., 2012, Figure 3, Table 1).
Benthoscape classes (See Brown et al., 2012, Figure 3).

Reference:
Brown, C. J., Sameoto, J. A., & Smith, S. J. (2012). Multiple methods, maps, and management applications: Purpose made seafloor maps in support of ocean management. Journal of Sea Research, 72, 1–13. https://doi.org/10.1016/j.seares.2012.04.009

Cite this data as: Brown, C. J., Sameoto, J. A., & Smith, S. J. Data of: Benthoscape Map of German Bank. Published: February 2021. Population Ecology Division, Fisheries and Oceans Canada, Dartmouth, N.S. https://open.canada.ca/data/en/dataset/b7f81d4a-2cb6-4393-b35b-e536ec63e834

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Weir Enumerations and Capture-Mark-Recapture Estimates of Population Size for Arctic Char (Salvelinus alpinus) from the Halokvik River, Nunavut

Across the Canadian North, Arctic Char, Salvelinus alpinus, are culturally important and critical for maintaining subsistence lifestyles and ensuring food security for Inuit. Arctic Char also support economic development initiatives in many Arctic communities through the establishment of coastal and inland commercial char fisheries. The Halokvik River, located near the community of Cambridge Bay, Nunavut, has supported a commercial fishery for anadromous Arctic Char since the late 1960s. The sustainable management of this fishery, however, remains challenging given the lack of biological data on Arctic Char from this system and the limited information on abundance and biomass needed for resolving sustainable rates of exploitation. In 2013 and 2014, we enumerated the upstream run of Arctic Char in this system using a weir normally used for commercial harvesting. Additionally, we measured fish length and used T-bar anchor tags to mark a subset of the run. Subsequently, we estimated population size using capture-mark-recapture (CMR) methods. The estimated number of Arctic Char differed substantially between years. In 2013, 1967 Arctic Char were enumerated whereas in 2014, 14,502 Arctic Char were enumerated. We attribute this marked difference primarily to differences in weir design between years. There was also no significant relationship between daily mean water temperature and number of Arctic Char counted per day in either year of the enumeration. The CMR population estimates of Arctic Char (those ≥450mm in length) for 2013 and 2014 were 35,546 (95% C.I 30,513-49,254) and 48,377 (95% C.I. 37,398-74,601) respectively. The 95% CI overlapped between years, suggesting that inter-annual differences may not be as extreme as what is suggested by the enumeration. The population estimates reported here are also the first estimates of population size for an Arctic Char stock in the Cambridge Bay region using CMR methodology. Overall, the results of this study will be valuable for understanding how population size may fluctuate over time in the region and for potentially providing advice on the sustainable rates of harvest for Halokvik River Arctic Char. Additionally, the results generated here may prove valuable for validating current stock assessment models that are being explored for estimating biomass and abundance for commercial stocks of Arctic Char in the region.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Fieldnotes 2023-2024: Pacific Science Field Operations

Fisheries and Oceans Canada (DFO) conducts research and undertakes monitoring surveys of the marine and freshwater environment in support of sustainable fisheries, healthy aquatic ecosystems and living resources, and safe and effective marine services. In an effort to effectively inform and ensure Canadians feel engaged in the delivery of its science mandate, DFO produces Fieldnotes, an annual compendium of planned science field operations in the North Pacific and Arctic oceans, as well as in the coastal and interior waters of British Columbia and Yukon.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Biodiversity Monitoring Stations for Benthic Macrofauna and Meiofauna in the Disko Fan and Hatton Basin Conservation Areas

In 2012 and 2013, Fisheries and Oceans Canada surveyed the benthos in two areas closed to bottom contact fishing, the Narwhal Overwintering and Coldwater Coral Zone (now the Disko Fan Conservation Area, DFCA), and the Hatton Basin Voluntary Coral Protection Zone (now the Hatton Basin Conservation Area, HBCA). Samples were collected following protocols recommended by the Arctic Council’s Circumpolar Biodiversity Monitoring Plan for the purposes of providing baseline data for future monitoring of benthic invertebrates in this sensitive region, and for facilitating pan-Arctic comparisons of benthic communities. Five biodiversity monitoring stations were established, four in the DFCA and one in the HBCA, each of which was fully sampled according to those protocols with Van Veen grabs or box corers, drop cameras and temperature recorders attached to the gear. This report summarises the grab/core-sampled benthic fauna collected during the 2012 survey of the Conservation Areas and complements another report documenting the epibenthos from the camera transects in the DFCA. Here we report on macrofauna in the 1-cm size fraction, and on foraminiferan meiofauna.

The data provided is presented in the following report (see related link) :
Jacobs, K., Bouchard Marmen, M., Rincón, B., MacDonald, B., Lirette, C., Gibb, O., Treble, M., and Kenchington, E. 2022. Biodiversity Monitoring Stations for Benthic Macrofauna and Meiofauna in the Disko Fan and Hatton Basin Conservation Areas. Can. Tech. Rep. Fish. Aquat. Sci. 3487: vi + 86 p.

Cite this data as: Bouchard Marmen, Marieve; Rincon, Beatriz ; MacDonald, Barry; Lirette, Camille; Gibb, Olivia; Treble, Margaret ; Jacobs, Kevin; Kenchington, Ellen (2022). Biodiversity Monitoring Stations for Benthic Macrofauna and Meiofauna in the Disko Fan and Hatton Basin Conservation Areas. Published January 2023. Ocean Ecosystems Science Division, Fisheries and Oceans Canada, Dartmouth, N.S. https://open.canada.ca/data/en/dataset/b7bcff18-698b-4d40-a7bd-13d39925cbeb

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Maritimes 4VSW Research Vessel Survey

“4VSW” missions  focus on the eastern half of the Scotian Shelf, and occur primarily in March, but sets in both  February, and April are also present in the data.   These missions  use a unique stratification scheme intended to optimize the abundance estimates of cod.  Collected data includes total catch in numbers and weights by species. Length frequency data is available for most species, as are the age, sex, maturity and weight information for a subset of the individual animals. Other data such as ageing material, genetic material, and stomach contents are often also collected, but are stored elsewhere.

Cite this data as: Clark, D., Emberley, J. Data of Maritimes 4VSW Research Vessel Survey. Published January 2021. Population Ecology Division, Fisheries and Oceans Canada, Dartmouth, N.S. https://open.canada.ca/data/en/dataset/a851ce30-e216-4d7d-a29c-05631eef140e

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Benthic Megafaunal Assemblages on Scallop Fishing Grounds in the Bay of Fundy (1997 and 2007)

The annual summer scallop surveys on the principal grounds in the Bay of Fundy follow stratified-random designs. The gear comprises a ‘Digby scallop drag’ with four ‘buckets’, each of 760 mm inside width, their bags being made of 74 mm steel-wire rings linked by rubber washers. A comparative data set of three scallop grounds (Digby, Lurcher Shoal and Grand Manan) was produced comprised of 190 stations sampled in 1997 and 213 from 2007–08. Presence/absence of a common suite of 68 benthic invertebrate taxa were recorded: 43 individual species, 20 additional genera and five higher taxa, all drawn from nine phyla. Each taxon was coded for each of seven biological traits (each with associated modalities), selected for their assumed relevance to environmental drivers. A score between 0 and 3 was assigned based on the literature for the taxon’s affinity to each modality, using ‘fuzzy coding’. Non-zero scores were assigned to as many modalities as required to represent the traits of the taxon’s adult stage. The resulting taxa x traits matrix, of 68 taxa by 27 modalities, is provided here along with the metadata for each station sampled. In addition, fourteen environmental variables, deemed relevant to benthic epifauna and representing both seabed sediments and the water column, were quantified for each survey station. Seabed depth, mean grain size, mean significant wave height, mean seabed shear stress, root mean square tidal current speed 1 m above the seabed and combined averaged wave-current shear velocity were each extracted from a sediment transport model for the Bay of Fundy prepared by Li et al. (2015). Mean values for current velocities, salinity and temperature for both surface and bottom layers, plus maximum mixed layer depth and bottom shear were each drawn from the Bedford Institute of Oceanography North Atlantic Model (BNAM: Wang et al., 2018). BNAM values averaged across 1990–2015 were used when examining faunal differences among survey areas, but explorations of temporal change used annual values for 1997 and 2007 individually. The variable nomenclature in the attached spreadsheet follows those of Li et al. (2015) and Wang et al. (2018). Results of the spatial and temporal analyses of these data are found in Staniforth et al. (2023). The values for each of the environmental variables are provided in the spreadsheet below. Their interpolated surfaces are also provided.

Cite this data as: MacDonald, Barry; Staniforth, Calisa; Lirette, Camille; Murillo, Francisco; Kenchington, Ellen; Kenchington, Trevor (2023). Benthic Megafaunal Assemblages on Scallop Fishing Grounds in the Bay of Fundy (1997 and 2007). Published May 2024. Ocean Ecosystems Science Division, Fisheries and Oceans Canada, Dartmouth, N.S. https://open.canada.ca/data/en/dataset/935836da-a565-4f1e-806e-d354d8db252c

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Delineating Coral and Sponge Concentrations in the Biogeographic Regions of the East Coast of Canada Using Spatial Analyses

Concentrations of sea pens, small and large gorgonian corals and sponges on the east coast of Canada have been identified through spatial analysis of research vessel survey by-catch data following an approach used by the Northwest Atlantic Fisheries Organization (NAFO) in the Regulatory Area (NRA) on Flemish Cap and southeast Grand Banks. Kernel density analysis was used to identify high concentrations. These analyses were performed for each of the five biogeographic zones of eastern Canada. The largest sea pen fields were found in the Laurentian Channel as it cuts through the Gulf of St. Lawrence, while large gorgonian coral forests were found in the Eastern Arctic and on the northern Labrador continental slope. Large ball-shaped Geodia spp. sponges were located along the continental slopes north of the Grand Banks, while on the Scotian Shelf a unique population of the large barrel-shaped sponge Vazella pourtalesi was identified. The latitude and longitude marking the positions of all tows which form these and other dense aggregations are provided along with the positions of all tows which captured black coral, a non-aggregating taxon which is long-lived and vulnerable to fishing pressures.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Quantitative PCR (qPCR) of key macroalgal non-indigenous species in Nova Scotia and New Brunswick waters

To support the surveillance of key macroalgae and non-indigenous species in Nova Scotia and New Brunswick, five quantitative PCR (qPCR) assays were designed and tested at 111 sites in 2022-2023 targeting the following non-indigenous macroalgal species: Antithamnion sparsum, Bonnemaisonia hamifera, Codium fragile, Dasysiphonia japonica, Fucus serratus. All assays were developed in 2022 by the Center for Environmental Genomics Applications (CEGA, Newfoundland, Canada) except Antithamnion sparsum, for which an assay was developed in 2023 by the Aquatic Biotechnology Laboratory (ABL) at the Bedford Institute of Oceanography. All amplification was performed by the ABL in 2022-2023. The assay developed for Fucus serratus was later determined to be non-specific, and amplifies both F. serratus and Fucus distichus.

Cite this data as: Krumhansl K, Brooks C, Lowen B, DiBacco C, (2025). Quantitative PCR (qPCR) of Key Macroalgal Non-Indigenous Species in Nova Scotia and New Brunswick Waters. Version 1.5. Fisheries and Oceans Canada. Samplingevent dataset. https://ipt.iobis.org/obiscanada/resource?r=quantitative_qpcr_macroalgal_nonindigenous_species_novascotia_newbrunswick_2022_2023&amp;v=1.5

For additional information please see:

LeBlanc F., Belliveau V., Watson E., Coomber C., Simard N., DiBacco C., Bernier R., Gagné N. 2020. Environment DNA (eDNA) detection of marine aquatic invasive species (AIS) in Eastern Canada using a targeted species-specific qPCR approach. Management of Biological Invasions 11(2):201-217

Krumhansl K.A., Brooks C.M., Lowen B., O’Brien J., Wong M., DiBacco C. Loss, resilience and recovery of kelp forests in a region of rapid ocean warming. Annals of Botany 2024 Mar 8; 133(1):73-92

Brooks C.M., Krumhansl K.A. 2023. First record of the Asian Antithamnion sparsum Tokida, 1932 (Ceramiales, Rhodophyta) in Nova Scotia, Canada. BioInvasions Records 12(3):745-725.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada