AndreaBozzo/ceres-open-data-index huggingface dataset:
Feeding and migration important areas for Blue whales in the Estuary and the Gulf of St. Lawrence and in the Atlantic Ocean

A modelling analysis conducted by Fisheries and Oceans Canada (DFO) identified these areas as the most suitable habitat for Blue whales: Gulf of St. Lawrence, waters off the southern coast of Newfoundland, the region of Mecatina Trough, the Esquiman Channel and the continental shelf margin off Nova Scotia. They represent important areas for foraging, feeding and socializing for Blue whales. The sources of data used to determine these important areas (by the enclosing boxes method) and the annual and seasonal cycles of Blue whale travel patterns include, but are not limited to, radio and satellite telemetry, passive acoustic monitoring, line-transect aerial surveys, anecdotal reports of observations and modelling.

This layer does not represent the general distribution of the Blue whale. Important areas have been identified by reviewing several sources of information and to the best of researchers' knowledge. Several information about Blue whales, their behaviour and habitat use are still unknown. Data is scarce in some areas during winter periods. Observation efforts mostly occur during the summer period, however, data sources can validate their presence during seasons when the observation effort is lower. The Mecatina trough region represents an important area based on historical and non-current data. The presence data per month refers strictly to the information available in the cited research document, and does not express the absence of the species outside the months when a presence was validated. The presented information is valid until the following research survey.

Reference:

Lesage, V., J.-F. Gosselin, J. W. Lawson, I. McQuinn, H. Moors-Murphy, S. Plourde, R. Sears. and Y. Simard. 2018. Habitats important to blue whales (Balaenoptera musculus) in the Western North Atlantic. DFO Can. Sci. Advis. Sec. Res. Doc. 2016/080: iv + 50 p.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Blue whale sightings in the Estuary and Gulf of St. Lawrence

Sightings data were collected by the Mingan Island Cetacean Study (MICS) from 1980 to 2008 with annual surveys realised in the Gulf of St. Lawrence between the end of may and early november. Surveys were conducted using inflatable boats enabling the close approaches necessary to photograph and biopsy blue whales.

The aim of this project was to provide additional information for designating blue whale critical habitat as required under the Canadian Species at Risk Act.

For more details consult the following report:

Ramp, C. and Sears, R. 2013. Distribution, densities, and annual occurrence of individual blue whales (Balaenoptera musculus) in the Gulf of St. Lawrence, Canada from 1980-2008. DFO Can. Sci. Advis. Sec. Res. Doc. 2012/157. vii + 37 p.
http://www.dfo-mpo.gc.ca/csas-sccs/Publications/ResDocs-DocRech/2012/2012_157-eng.html

Data of blue whale sightings, collected by the MICS, have been analysed per km of effort in 3 x 3 km grid cells in the Gulf of St. Lawrence for the 2000-2008 period.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Standard Oceanographic Sampling Stations (Pacific)

To develop a database of high quality CTD observations at key locations in DFO’s Pacific Region, 22 stations have been selected for sampling as often as possible. Chief Scientists of DFO vessels with CTD equipment on board are asked to acquire a CTD profile at as many of these stations as possible. There may be circumstances that will prevent conducting a CTD cast but the intent is to collect as many as possible such that over time useful time series of CTD profiles will be available at these locations.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Blue whale - Trajectories and locations of Area-Restricted Search

The blue whale (Balaenopterus musculus) is a wide-ranging cetacean that can be found in all oceans, inhabiting coastal and oceanic habitats. In the North Atlantic, little is known about blue whale distribution and genetic structure, and if whether animals found in Icelandic waters, the Azores, or Northwest Africa are part of the same population as those from the Northwest Atlantic. In the Northwest Atlantic, seasonal movements of blue whales and habitat use, including the location of breeding and wintering areas, are poorly understood.

The behaviour of remotely-monitored animals can be inferred from a time series of location data. This is because animals tend to demonstrate stochasticity in their movement paths as a result of spatial variation in environmental characteristics, such as topography or prey density (Curio 1976; Gardner et al. 1989; Turchin 1991; Wiens et al. 1993). Predators are expected to decrease travel speed and/or increase turning frequency and turning angle when a suitable resource, e.g., food patch, is encountered (Turchin 1991), otherwise known as area-restricted search (ARS). In contrast, animals in transit or travelling tend to move at faster and more regular speeds, with infrequent and smaller turning angles (Kareiva and Odell 1987; Turchin 1998).

Based on satellite telemetry to track the seasonal movements of 24 blue whales from eastern Canada in 2002 and from 2010 to 2015, it was possible to estimate trajectories and locations where ARS behaviour of blue whales was inferred at a 4h time interval.

To assess blue whale movements and behavior, a Bayesian switching statespace model (SSSM) was applied to Argos-derived telemetry data (Jonsen et al. 2005; Jonsen et al. 2013). An SSSM essentially estimates animal location at fixed time intervals, movement parameters and behavioral patterns.

Two important sources of uncertainty can be measured separately: estimation error resulting from inaccurate observations (Argos location error) and process variability linked to the stochasticity of the movement process (behavior mode estimation) (Jonsen et al. 2003; Patterson et al. 2008).

The points visible on land are the result of errors in the Argos geographic position calculation. They have been deliberately left unchanged to assess the performance of the model, which was able to clean up some positions, but not all.

Lesage, V., Gavrilchuk, K., Andrews, R.D., and Sears, R. 2016. Wintering areas, fall movements and foraging sites of blue whales satellite-tracked in the Western North Atlantic. DFO Can. Sci. Advis. Sec. Res. Doc. 2016/078. v + 38 p.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Stable isotope ratios of tidal freshwater fish and invertebrate communities in North West Miramichi and Miramichi Estuary

PURPOSE:
To characterize food webs of freshwater fish communities using stable isotopes
            

DESCRIPTION:
Data set containing the carbon, nitrogen, and sulphur stable isotope ratios of fishes caught in the Northwest Miramichi River system
            

PARAMETERS COLLECTED:
Species gut contents (ecological); species isotopic signatures (ecological); points (spatial)

PHYSICAL SAMPLE DETAILS:
Powdered animal tissue

SAMPLING METHODS:
Invertebrates were sampled via kicknet and were collected 1-4 meters from the shore of each location in one-minute intervals with 5-10 intervals per site. Fish were captured using a variety of net types in order to maximize sampling breadth. Please see below for list of net types and mesh sizes: 

Large fyke (box, lead line, and cod = 5mm tight, 10mm loose); 6mm beach seine; Site 3: two small fyke nets (box, lead line, and cod = 17mm, 17mm and 10mm tight, and 32mm, 32mm, 20mm loose), one trap net (box = 47.6mm and lead line = 146mm) were used).

USE LIMITATION:
To ensure scientific integrity and appropriate use of the data, we would encourage you to contact the data custodian.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Known concentration areas of the Stimpson's surfclam in the Estuary and the Gulf of St. Lawrence

Stimpson's surfclam or Arctic surfclam (Mactromeris polynyma) concentration areas in this layer are described as being known and commercially exploited historically and/or currently. The mapping of these areas is based on several sources of information: exploratory fisheries, scientific surveys and fishermen's logbooks. Commercial fishery data come from three distinct sources of information: the purchase receipt, the fishermen's logbook and commercial sampling by Fisheries and Oceans Canada (DFO). All data comes from the research document published in 2015. These concentration areas are considered among the most abundant and are used for commercial fishing (note: high densities are not found strictly in these beds).

This dataset does not represent the general distribution of the species nor the extent to which fishing is allowed. The extent of shellfish beds can change over time in response to, among others, harvesting and recruitment rates. The polygons might underestimate the concentration areas because fishing and sampling occur where the target resource is known to be more abundant. However, the precision is good enough for resource protection and management needs in case of an environmental incident. This information is valid until data from a most recent research survey is published.

Data sources and references :

DFO. 2007. Évaluation des stocks de quahog nordique (Arctica islandica) du banc de l'île de Sable et de la baie St. Mary's, et du stock de mactre de Stimpson (Mactromeris polynyma) du Banquereau. Secr. can. de consult. sci. du MPO. Avis sci. 2007/034 (Révisé).  

Lambert J. et P. Goudreau. 1997. Biologie et exploitation de la mactre de Stimpson (Mactromeris polynyma) sur les côtes du Québec. Sec. can. éval. stock du MPO. Doc. rech. 1997/101. 44 p. 

Landry, T.E., E. Wade, E. et M. Giguère. 1992. Évaluation des gisements de mactre de Stimpson, Mactromeris polynyma, dans le golfe du Saint-Laurent: résultats préliminaires. MPO, CSCPCA Doc. rech. 1992/086. 29 p.

Trottier, S. et P. Goudreau. 2015. Évaluation des stocks de mactre de Stimpson (Mactromeris polynyma) des eaux côtières du Québec en 2014. Secr. can. de consult. sci. du MPO. Doc. de rech. 2016/063. Ix + 72 p.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Mackenzie River Exploratory Fishery 1989-1993; Investigation of the Population Structure of Broad Whitefish (Coregonus nasus) and Biological Analysis and Population Assessment of Northern Pike (Esox lucius), Inconnu (Stenodus leucichthys), and Lake Whitefish (Coregonus clupeaformis).

An exploratory fishery was carried out in the Mackenzie River Delta between 1989 and 1993 at the request of the Inuvik Hunters and Trappers Committee to assess the commercial fishery potential in this area. Data collected during this exploratory fishery was used in two technical reports. Broad whitefish were the target species of this fishery (DFO Technical Report 2180), however other species such as northern pike, inconnu, and lake whitefish were also harvested (DFO Technical Report 2330).

Biological data from broad whitefish (fork length, age, gonadosomatic index and instantaneous mortality) were analyzed to assess the impact of an exploratory fishery in the Mackenzie River Delta. The data were collected using variable mesh experimental gill nets and commercial harvesters' 139 mm (5.5”) mesh gill nets. The data suggest that the broad whitefish population might be separated, with larger mature spawners gathering in the main channels prior to spawning and smaller, immature or resting fish staying in side channels away from strong currents. From this analysis we conclude that the size and structure of the broad whitefish population(s) found in this area are stable at the current level of total harvest (commercial and subsistence combined) There may be room for increased harvests but to what level is uncertain.

Biological data from northern pike, inconnu, and lake whitefish were analyzed to assess the impact of the fishery on population abundance and structure. All three by catch species support subsistence fisheries in the Mackenzie Delta. lnconnu and lake whitefish migrate substantial distances, crossing land claim borders and are likely fished by a variety of user groups. Northern pike, on the other hand tend to be non-migratory with localized populations that are mainly fished by people living in the near vicinity. A concern was that commercial fishing pressure might reduce the numbers of fish available to subsistence users. Based on trends in size and age frequency, age at maturity, sex ratio, growth rates, and mortality rates, we conclude that inconnu and lake whitefish populations in the Mackenzie Delta have remained healthy and stable at the current harvest levels, however northern pike populations showed a decrease in the proportion of older fish, possibly indicating over-fishing of local stocks. lnconnu and lake whitefish may be able to withstand increased harvest, but to what extent is unknown, given that little reliable information is available on subsistence harvest levels in this region. Increasing harvest levels of pike may be risky and we suggest that a reduction of current commercial harvest quotas be considered.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Biomass estimates of Witch Flounder in the Gulf of St. Lawrence (NAFO 4RST)

PURPOSE:
These data have been updated following a Canadian Science Advice Secretariat (CSAS) Regional Science Advisory Process. Associated publications are available in the citation section below or will be posted on the Fisheries and Oceans Canada (DFO) Science Advisory Schedule as they become available.

DESCRIPTION:
The yearly biomass estimates of Gulf of St. Lawrence Witch Flounder were obtained using a Bayesian Schaefer Surplus Production model as part of the stock assessment to year 2021.

The yearly estimates presented come from Markov Chain Monte Carlo (MCMC) simulations. The yearly median estimates are provided, along with uncertainty estimates (2.5th, 25th, 75th and 97.5th percentiles). The values are in thousands of tons of 30+ cm biomass.

USE LIMITATION:
To ensure scientific integrity and appropriate use of the data, we would encourage you to contact the data custodian.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Depth-attenuated relative wave exposure indices for Pacific Canada

This dataset includes five depth-attenuated relative wave exposure index layers in raster format. Relative Exposure Index (REI) values are calculated based on effective fetch (derived from fetch values) combined with modelled wind data. The output REI layers are attenuated by depth, resulting in greater values in shallow, nearshore areas (Bekkby et al. 2008). The cell values represent an estimate of wave exposure at bottom depth normalized between regions from 0 (protected) to 1 (exposed).

The objective of this dataset is to provide an estimate of wave exposure at bottom depth, primarily for use in species distribution modelling.
 
Each single-band raster corresponds to a marine region, which generally coincide with the following layers from the Species Distribution Modelling Boundaries (https://www.gis-hub.ca/dataset/sdm-boundaries) dataset: Nearshore_HG, Nearshore_NCC, Nearshore_QCS, Nearshore_QCS, and Shelf_SalishSea. These layers extend to 50 m depth and up to 5 km from shore.

Tabular data (csv files) are also included as part of the data package. These data are the calculated Relative Exposure Index (REI) values with fields for position information. The fetch values from gridded nearshore fetch (https://gis-hub.ca/dataset/gridded-nearshore-fetch) are used as a source dataset and the locations in the REI are the same as the gridded fetch.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Coastal Environmental Baseline Program (Newfoundland Region), Placentia Bay Biological and Water Sampling

This project was completed by the Coastal Environmental Baseline Program (Coastal and Freshwater Ecology Section) in the Newfoundland and Labrador Science Branch of Fisheries and Oceans Canada (DFO). From 2018 to 2022 baseline biological and physical data were collected in Placentia Bay using Atlantic Zone Monitoring Program (AZMP) and Cold Ocean Productivity Experiment (COPE) protocols. Complementary data were collected in the bay using moored CTDs. Where possible, sampling was conducted monthly at 4 sites between May and November to capture broad scale spatial and temporal trends. Additionally, data were collected bi-weekly in April and May, and monthly from June to September at one of these sites to capture finer scale temporal trends, such as spring blooms, in collaboration with Dr. C. McKenzie. Phytoplankton were collected using vertical net tows and niskins. Zooplankton were collected using vertical net tows. CTDs were used to collect physical and biogeochemical water column data including temperature, pressure, salinity, depth, chlorophyll-a, turbidity, dissolved oxygen, pH, photosynthetic active radiation (PAR), fluorescent dissolved organic matter (FDOM), and conductivity. Water biogeochemistry data were obtained by collecting water samples with niskins at depths of 5, 10, 20, 30, 40m, and 10m above bottom to measure nutrients, chlorophyll-a, carbonates, and particulate organic carbon and nitrogen (POC/PON). Additionally, eDNA samples were taken at each of the 4 sampling sites.  This record contains the geographic locations of the sites, and information on the timing and type of data collected at each site.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Commercial catches sampling program in the Estuary and Gulf of St. Lawrence – Atlantic herring (Clupea harengus)

Summary
The Quebec region of the Department of Fisheries and Oceans (DFO) is responsible for the assessment of several fish and invertebrate stocks exploited in the Estuary and the northern Gulf of St. Lawrence. The commercial catches sampling program is one of the sources of information used to complete these assessments. The data collected by this program, at wharf or at sea, offers among other things the advantage of a relatively large spatio-temporal coverage and provides some of the necessary knowledge to assess the demography and the structure of the exploited populations. This program is implemented by specialized DFO staff whose main mandate is to collect biological data on groundfish, pelagic fish and marine invertebrate species that are commercially exploited in the various marine communities.

Data
This dataset on the Atlantic herring (Clupea harengus) includes the metadata, sample weight, fish length, the sex and the number of specimens measured. This dataset covers the period of 1982 to present. In order to protect the confidentiality of the sources, some informations (such as those concerning the vessel) have been excluded and others (such as the date of capture) have been simplified. Entries where there was only one vessel in a fishing area for a given year were also excluded. Further information including the fishing areas coordinates can be found by clicking on the «Atlantic and Arctic commercial fisheries» and «Fishing areas» links below.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Scientific survey of sea scallop (Placopecten magellanicus) and Icelandic scallop (Chlamys islandica) around the Magdalen Islands (fishing area 20A)

Since 1985, research surveys targeting scallops—primarily the sea scallop (Placopecten magellanicus) and, to a lesser extent, the Icelandic scallop (Chlamys islandica)—have been conducted by Fisheries and Oceans Canada (DFO) at one- or two-year intervals around the Magdalen Islands (fishing area 20A). The main objective of this survey is to assess the status of sea scallop stocks. 

The study area is situated south of the Magdalen Islands, where scallop beds are typically sampled at depths ranging from approximately 25 to 35 m. Sampling stations are randomly selected from a predetermined fixed grid, with sampling conducted along transects at these randomly assigned locations within the study area. Each station is sampled using a lined Digby scallop dredge (20 mm mesh size), towed for roughly 500 m across the seabed.

This publication includes three files: the file biometriePetoncle_20, which contains detailed biometric data (species, size, weights and sex) from 1998 to 2024; the file taillePetoncle_20, which provides the size of the individuals sampled from 2009 to 2024; and the file traitPetoncle_20 which contains the abundances and densities per tow from 2009 to 2024. Data on abundances and densities per tow from 1998-2008 is available upon request.

This dataset is updated every one to two years as data becomes available. A cleaning of aberrant data has been carried out. However, there is missing data in various columns of the dataset – use the data with caution. If you have any questions please contact DFO.DataManagementSAISB-GestionDonneesDAISS.MPO@dfo-mpo.gc.ca or the author.  

For certain time periods, associated species are identified and semi-quantitatively counted directly on the sorting table, and the results are presented in the following publications: 
- https://open.canada.ca/data/en/dataset/6529a4b0-f863-4568-ac71-1fa26cf68679
- https://open.canada.ca/data/en/dataset/71732ad5-5c70-4dbf-916d-a94e1380c53b 

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Commercial catches sampling program in the Estuary and Gulf of St. Lawrence – common rock crab (Cancer irroratus)

Summary
The Quebec region of the Department of Fisheries and Oceans (DFO) is responsible for the assessment of several fish and invertebrate stocks exploited in the Estuary and the northern Gulf of St. Lawrence. The commercial catches sampling program is one of the sources of information used to complete these assessments. The data collected by this program, at wharf or at sea, offers among other things the advantage of a relatively large spatio-temporal coverage and provides some of the necessary knowledge to assess the demography and the structure of the exploited populations. This program is implemented by specialized DFO staff whose main mandate is to collect biological data on groundfish, pelagic fish and marine invertebrate species that are commercially exploited in the various marine communities.

Data
This dataset on the common rock crab (Cancer irroratus) includes the metadata, sample weight, shell width, shell condition and the sex of the specimens measured. This dataset covers the periods of 1990 and 1995 to present. In order to protect the confidentiality of the sources, some informations (such as those concerning the vessel) have been excluded and others (such as the date of capture) have been simplified. Entries where there was only one vessel in a fishing area for a given year were also excluded. Further information including the fishing areas coordinates can be found by clicking on the «Atlantic and Arctic commercial fisheries» and «Fishing areas» links below.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada