AndreaBozzo/ceres-open-data-index huggingface dataset:
Multidisciplinary Arctic Program (MAP) - Last Ice, 2018 Spring Campaign: Sea ice and surface water bacteria, viruses and environmental variables

In 2018, Fisheries and Oceans Canada initiated the Multidisciplinary Arctic Program (MAP) – Last Ice, the first ecosystem study of the poorly characterized region of the Lincoln Sea in the Marine Protected Area of Tuvaijuittuq, where multiyear ice still resides in the Arctic Ocean. MAP-Last Ice takes a coordinated approach to integrate the physical, biochemical, and ecological components of the sea ice-ocean connected ecosystem and its response to climate and ocean forcings. The cross-disciplinary program establishes baseline ecological knowledge for Tuvaijuittuq and, in particular, for its unique multiyear ice ecosystem. The database provides baseline data on the abundance of bacteria and viruses in multi- and first-year ice and in surface waters of the Lincoln Sea in Tuvaijuittuq, and their relation to bio-physical conditions. The data were collected during the 2018 spring field campaign of the MAP-Last Ice Program, at an ice camp offshore of Canadian Forces Station (CFS) Alert.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Bay Scale Assessment of Nearshore Habitat Bras d'Or Lake

A history of nearshore benthic surveys of Bras d’Or Lake from 2005 – 2011 is presented.

Early work utilized drop camera and fixed mount sidescan. The next phase was one of towfish development, where camera and sidescan were placed on one platform with transponder-based positioning. From 2009 to 2011 the new towfish was used to ground truth an echosounder. The surveys were performed primarily in the northern half of the lake; from 10 m depth right into the shallows at less than 1 m. Different shorelines could be distinguished from others based upon the relative proportions of substrate types and macrophyte canopy. The vast majority of macrophytes occurred within the first 3 m of depth. This zone was dominated by a thin but consistent cover of eelgrass (Zostera marina L.) on almost all shores with a current or wave regime conducive to the growth of this plant. However, the eelgrass beds were frequently in poor shape and the negative impacts of commonly occurring water column turbidity, siltation, or possible localized eutrophication, are suspected. All survey data were placed into a Geographic Information System, and this document is a guide to that package. The Geographic Information System could be used to answer management questions such as the placement and character of habitat compensation projects, the selection of nearshore protected areas or as a baseline to determine long term changes.

Vandermeulen, H. 2016. Video-sidescan and echosounder surveys of nearshore Bras d’Or Lake. Can. Tech. Rep. Fish. Aquat. Sci. 3183: viii + 39 p.

Cite this data as: Vandermeulen H. Bay Scale Assessment of Nearshore Habitat Bras d'Or Lake. Published May 2022. Coastal Ecosystems Science Division, Fisheries and Oceans Canada, Dartmouth, N.S.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Recreational Shark Fishing Tournament Landings Data and Canadian Dart Tag Database

These data consist of the Recreational Shark Fishing Tournament landings database (1993-2022 inclusive) and the Canadian Dart tag database (2006 onwards; updated annually). Both were collected by the Maritimes Science Division of Fisheries and Oceans Canada. The landings records include biological sampling from 4266 animals and the dart tag records include 4138 tagging and 97 recapture events to date. Potential users should consult Bowlby et al. (2022) for the description, management history, and technical details pertaining to these data. Information is focused on Blue Sharks because they were the primary species captured at recreational tournaments.

Cite this data as: Bowlby, H., Joyce, W. Recreational Shark Fishing Tournament Landings Data and Canadian Dart Tag Database. Published January 2023 . Population Ecology Division, Fisheries and Oceans Canada, Dartmouth, N.S. https://open.canada.ca/data/en/dataset/4309f1f7-6779-416d-9660-c02f0f99b482

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Bay Scale Assessment of Eelgrass Beds Using Sidescan and Video - Richibucto 2007

A towfish containing sidescan and video hardware was used to map eelgrass in two shallow northern New Brunswick estuaries. The sidescan and video data were useful in documenting suspected impacts of oyster aquaculture gear and eutrophication on eelgrass. With one boat and a crew of three, the mapping was accomplished at a rate of almost 10 km2 per day. That rate far exceeds what could be accomplished by a SCUBA based survey with the same crew. Moreover, the towfish survey applied with a complementary echosounder survey is potentially a more cost effective mapping method than satellite based remote sensing.

Cite this data as: Vandermeulen H. Data of: Bay Scale Assessment of Eelgrass Beds Using Sidescan and Video - Richibucto 2007. Published: October 2017. Coastal Ecosystems Science Division, Fisheries and Oceans Canada, Dartmouth, N.S. https://open.canada.ca/data/en/dataset/ca7af8ba-8810-4de5-aa91-473613b0b38d

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Vessel Density Mapping Series in the Northwest Atlantic

The Automatic Identification System (AIS) is a global, satellite-based and terrestrial-based ship tracking system that uses shipborne equipment to remotely track vessel identification and positional information and is typically required on vessels of 300 gross tonnage or more on an international voyage, of 500 gross tonnage or more not on an international voyage, and passenger ships of all sizes. AIS tracking technologies are primarily used in support of real-time maritime domain awareness and for maritime security and safety of life at sea. This report describes a geographic information system (GIS) analysis of 2019 AIS data to produce yearly and monthly vessel density maps of all vessel classes combined and yearly density maps of each vessel class. The year 2019 was selected to portray shipping densities in a pre-COVID 19 pandemic depiction of the maritime transport sector in the Northwest Atlantic. Vessel density map applications include use in spatial analysis and decision support for marine spatial planning.
In 2023 the process was applied to the years 2013 through to 2022 and were made available using the same processes that were applied to the original 2019 datasets. Subsequent years will be processed and added to this entry as an ongoing series.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Phytoplankton counts and oceanographic conditions at the Harmful Algae Monitoring Programme (HAMP) stations

Phytoplankton species abundance (cell/L) and oceanographic conditions (temperature, salinity, chlorophylle-a (mg/m³) for some years and nutrient content (mmol/m³)) at stations of the Harmful Algae Monitoring Programme (HAMP) from1994 to 2016.

The layer presents the station positions of the HAMP. Two files are attached to each station: one containing the cell counts and the second the oceanographic conditions.

Purpose

The summer growth of many toxic and harmful microalgae species poses a serious threat for the public health and commercial or recreational exploitation of some marine species.

The Department of Fisheries and Oceans (DFO) initiated the Harmful Algae Monitoring Programme (HAMP) in 1989 in order to complete the monitoring program for paralytic shellfish poisoning (PSP). Under the responsibility of Maurice-Lamontagne Institute scientists, the HAMP is to monitor, by means of a coastal station network, the natural occurrence of toxic and harmful algae in the St. Lawrence in order to determine their spatio-temporal distribution and the environmental conditions leading to their bloom.

The network is made up of 11 coastal stations which are sampled every week from April to November and which are established along Quebec eastern shores. It extends from Tadoussac to Tête-à-la-Baleine on the St. Lawrence north shore and from Sainte-Flavie to Carleton on the south shore along the Gaspé peninsula. Another station is located in Havre-Aux-Maisons, Magdalen Islands.

The HAMP was discontinued in 2010 but opportunistic samplings are still done at some stations.

Additional information

The sampling and analysis protocol is described in details in the following publication apart from the fact that the number of identified and counted species significantly has been increasing with time. Phytoplankton samples are preserved in a lugol solution.

Blasco D., M. Levasseur, R. Gélinas, R. Larocque, A.D. Cembella, B. Huppertz et E. Bonneau.1998. Monitorage du phytoplancton toxique et des toxines de type IPM dans les mollusques du Saint-Laurent: 1989 à 1994. Rapp. stat. can. hydrogr. sci. océan. 15 1 : x i-117 p.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Monthly Satellite Sea Surface Temperature Climatology of the Canadian Pacific Exclusive Economic Zone (1981-2010) – 4 km Resolution

Description:
Night-time sea surface temperature (SST) was acquired from the AVHRR Pathfinder project, with data distributed by NOAA, and averaged into monthly climatological composites. The data span late 1981 through 2010 at 4 km pixel resolution.

Methods:
AVHRR Pathfinder version 5.3 Level 3C night Sea Surface Temperature (SST) was acquired from NOAA at 4 km spatial resolution. The monthly mean value at all pixels was calculated for individual years, then all years were combined to produce final maps of monthly mean and monthly standard deviation of SST, and the number of occurrences of valid data at each pixel over the period of observation. The quality level of all satellite observations was also acquired with this dataset, and used to remove any pixels with a quality level lower than 4. Further, pixels with fewer than two occurrences over the period 1981-2010 were removed from these maps, and set to a NaN value in the tif files. All resulting rasters were cropped to the Canadian Exclusive Economic Zone and assigned to the NAD83 geographic coordinate reference system (EPSG:4269), and have a final pixel resolution of approximately 0.0417 degrees. The monthly mean, monthly standard deviation, and number of occurrences for all pixels are provided.

Uncertainties:
Satellite values have been evaluated against global datasets, and datasets of samples in the Pacific region (see references). However, uncertainties are introduced when averaging together images over time as each pixel has a differing number of observations. Short-lived or spatially limited events may be missed.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Monthly Satellite Sea Surface Temperature Climatology of the Canadian Pacific Exclusive Economic Zone (2003-2020) – 1 km Resolution

Description:
Night-time sea surface temperature (SST) was retrieved from the MODIS instrument on the Aqua satellite, with data distributed by the NASA Ocean Biology Processing Group, and averaged into monthly climatological composites. The data span the years 2003-2020; records were created at 1 km pixel resolution to be consistent with other satellite products.

Methods:
MODIS-Aqua night long-wave Sea Surface Temperature (SST) images were acquired from the NASA Ocean Biology Processing Group at processing Level-2 (version 2018), 1-km resolution, spanning the period 2003-01-01 to 2020-12-31. Image pixels were aligned and mapped to a regular grid using the SeaDAS program, retaining all pixels with a quality level of ‘1’ or lower, which is recommended for scientific analysis. The monthly mean value at all pixels was calculated for individual years, and used to produce maps of the monthly climatological mean and standard deviation of SST. Additionally, the number of occurrences of valid data at each pixel over the period of observation were calculated. Pixels with fewer than two occurrences over the entire period of observation were removed from these maps, and set to a NaN value in the tif files. A few small gaps between pixels (near the edges of individual images) were filled using the median value of surrounding pixels, provided there were greater than 4 values. Finally, all rasters were cropped to the Canadian Exclusive Economic Zone and assigned to the NAD83 geographic coordinate reference system (EPSG:4269), and have a final pixel resolution of approximately 0.01 degrees. The monthly mean, monthly standard deviation, and number of occurrences for all pixels are provided.

Data Sources:
NASA Ocean Biology Processing Group. (2017). MODIS-Aqua Level 2 Ocean Color Data Version R2018.0. NASA Ocean Biology Distributed Active Archive Center. https://doi.org/10.5067/AQUA/MODIS/L2/OC/2018

Uncertainties:
Satellite values have been evaluated against global datasets, and datasets of samples in the Pacific region (see references). However, uncertainties are introduced when averaging together images over time as each pixel has a differing number of observations. Short-lived or spatially limited events may be missed.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Southern Gulf of St. Lawrence Snow Crab Research Trawl Survey Data

PURPOSE:
Trawl survey data used primarily for assessing the status of snow crab stocks in the southern Gulf of St. Lawrence.

DESCRIPTION:
Tow, catch, and biological information for snow crab and other species caught during the annual snow crab research vessel trawl survey in the southern Gulf of St. Lawrence. Currently, the survey uses a stratified random design that divides the area into 355 square grids, each measuring 12.7 km by 12.7 km. The survey area spans the majority of snow crab habitat in the southern Gulf, at depths ranging from 20 to 200 fathoms. Sampling stations are trawled during civil twilight hours using a Bigouden Nephrops bottom trawl net. The vessel operates at a target speed of 2 knots for a duration of 5 minutes, maintaining a warp-to-depth ratio of 3:1, with a maximum warp length of 575 fathoms.

PARAMETERS COLLECTED:
Snow crab: sex, carapace width, height of male crab claw, shell condition, gonad colour, egg colour, eggs remaining, and missing legs.
Other species: counts, and weights
Other: GPS coordinates; swept area; depth; temperature; CTD profile;

NOTES ON QUALITY CONTROL:
Data are checked for irregularities and errors.

SAMPLING METHODS:
Survey catches are sorted by species or taxonomic groups and measured directly on board. All snow crab are measured, while select fish species are measured only for a subset of survey stations.

USE LIMITATION:
To ensure scientific integrity and appropriate use of the data, we would encourage you to contact the data custodian.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Ecological insight of seasonal plankton succession to monitor shellfish aquaculture ecosystem interactions

Bivalve aquaculture has direct and indirect effects on plankton communities, which are highly sensitive to short-term (seasonal, interannual) and long-term climate changes, although how these dynamics alter aquaculture ecosystem interactions is poorly understood. Here, we investigate seasonal patterns in plankton abundance and community structure spanning several size fractions from 0.2 µm up to 5 mm, in a deep aquaculture embayment in northeast Newfoundland, Canada. Using flow cytometry and FlowCam imaging, we observed a clear seasonal relationship between fraction sizes driven by water column stratification (freshwater input, nutrient availability, light availability, water temperature). Plankton abundance decreased proportionally with increasing size fraction, aligning with size spectra theory. Within the bay, greater mesozooplankton abundance, and a greater relative abundance of copepods, was observed closest to the aquaculture lease. No significant spatial effect was observed for phytoplankton composition. While the months of August to October showed statistically similar plankton composition and size spectra slopes (i.e., food chain efficiency) and could be used for interannual variability comparisons of plankton composition, sampling for longer periods could capture long-term phenological shifts in plankton abundance and composition related to various processes, including climate change. Conclusions provide guidance on optimal sampling to monitor and assess aquaculture pathways of effects.

Cite this data as: Sharpe H, Lacoursière-Roussel A, Gallardi D (2024). Ecological insight of seasonal plankton succession to monitor shellfish aquaculture ecosystem interactions. Version 3.2. Fisheries and Oceans Canada. Sampling event dataset. https://doi.org/10.25607/2ujdvh

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Juvenile Salmon and Pelagic Ecosystem Trawl Surveys in Pacific Waters

Fisheries and Oceans Canada (DFO) has been conducting surface water trawl surveys since 1992 in the coastal waters of British Columbia, Washington, Oregon and Alaska and in the high seas of the Gulf of Alaska. These surveys initially focused on determining the migratory patterns (1992-2002) and on the growth and physiology (2003-2016) of juvenile Pacific Salmon. Since 2016, the focus has been expanded to include all components of the pelagic ecosystem while retaining a strong focus on juvenile Pacific Salmon. Given the change in research priorities, there are differences between years in location and timing. The survey series are provided based on large marine ecosystems, so data will vary in availability. These survey data contain fishing and catch information along with biological information recorded. Surveys available here have published reports that outline overall operations and any oceanographic data, zooplankton and additional samples collected.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Verify Ontario and enhanced vaccine certificate download and usage data

Get data on the Verify Ontario mobile application and Ontario's enhanced vaccine certificate. Data includes: * Approximate daily and cumulative Verify Ontario downloads by mobile operating system. * Approximate daily Verify Ontario scan results. * Aggregate daily and cumulative enhanced vaccine certificate downloads. This dataset is subject to change. **As of June 16, all COVID-19 datasets will be updated weekly on Thursdays by 2pm.** [Learn more about the Verify Ontario mobile application.](https://covid-19.ontario.ca/verify) [Learn more about the enhanced vaccine certificate.](https://covid-19.ontario.ca/proof-covid-19-vaccination)

Organization: Government of Ontario | Gouvernement de l'Ontario
Benthic Habitat Mapping Database

The purpose of the survey is to document and record habitat types and associated algae and marine invertebrate species in a variety of habitat types. Transect locations are randomly selected throughout the study area, which rotates between the north and south coasts of British Columbia on a biannual basis. Transects are laid perpendicular to the shoreline. A team of two divers swim the transect with data sheets to collect habitat, algae and marine invertebrate data as detailed below in the methods section. Data is keypunched in an MS Access database that can be queried for species observations and environmental information.
This dataset includes three tables pulled from the original database containing observations by species, observations by quadrat, and additional header information for each observation. All three tables can be linked by the field HKey. Three lookup tables are included as well, one for algae, one for invertebrates, and one for substrates.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Fish Habitat Assessment Output from Bay of Quinte Suitability Modelling

Habitat suitability was assessed for the Bay of Quinte Area of Concern, at a 3 m grid resolution, using the Habitat Ecosystem Assessment Tool (HEAT), temperature algorithms, vegetation models, and water level input. Habitat classifications were based on three variables: depth (elevation), vegetation, and substrate; and modified by temperature suitabilities. The final suitability maps were based on documented habitat and temperature associations for the fish in the area. Different life stages (spawning requirements, nursery habitat, adult habitat) were modeled for the years of 1972-2011. Suitability values were scaled from 0 (not suitable) to 1 (highly suitable) and converted to suitability classes of very low, low, medium, and high. The final maps for each guild – life stage combination are maximum suitability values from the 39-year period modelled.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Atlantic herring - Concentration areas, spawning sites and breeding areas - FHAMIS

Atlantic herring. Concentration, breeding areas and larval retention areas of Atlantic Herring in the St. Lawrence Estuary.Data extracted from the Fish Habitat Management Information System (FHAMIS).
Concentration areas, spawning sites and breeding areas of Atlantic herring  according to a literature review of documents produced between 1977 and 1998.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Phytoplankton pigments along Line-P

Phytoplankton pigments, determined by high-performance liquid chromatography (HPLC) are measured on DFO cruises three times a year in February, June, and August/September along Line P in the northeast subarctic Pacific. Sampling for phytoplankton pigments started in 2006 at the five main Line P stations and was expanded to sample at all twenty seven stations along the transect in June 2010.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada