AndreaBozzo/ceres-open-data-index huggingface dataset:
Seasonal Climatologies of the Canadian Pacific Exclusive Economic Zone from British Columbia Continental Margin (BCCM) Model (1993-2020)

Description:
Seasonal climatologies of the Canadian Pacific Exclusive Economic Zone (CPEEZ) were computed from a numerical simulation of the British Columbia continental margin (BCCM) model for the 1993 to 2020 period, which can be considered as a representation of the climatological state of the region.

Methods:
The BCCM model is an ocean circulation-biogeochemical model implementation of the Regional Ocean Modelling System (ROMS version 3.5). The horizontal resolution is eddy-resolving at 3 km and the vertical discretization is based on a terrain-following coordinate system with 42 depth levels of increasing resolution near the surface. A detailed description of the BCCM model is given in Peña et al. (2019). Spring months were defined as April to June, summer months were defined as July to September, fall months were defined as October to December, and winter months were defined as January to March. The data available here contain raster layers of seasonal climatology of temperature, salinity, current speed, nitrate, oxygen, total alkalinity, dissolved inorganic carbon, pH, aragonite saturation state, phytoplankton, and primary production. The data include 47 vertical levels (surface, bottom, and 45 more selected depths), except for total phytoplankton (surface values only) and primary production (depth-integrated values). A layer giving the bottom depth in metres at the centre of each grid point is also provided. Model grids were set to NaN values in regions where the model output is highly uncertain, such as inlets, nearshore areas, and the Strait of Georgia.

Uncertainties:
Model results have been extensively evaluated against observations (e.g. altimetry, CTD and nutrient profiles, observed geostrophic currents), which showed the model can reproduce with reasonable accuracy the main oceanographic features of the region including salient features of the seasonal cycle and the vertical and cross-shore gradient of water properties. However, the model resolution is too coarse to allow for an adequate representation of inlets, nearshore areas, and the Strait of Georgia.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Likelihood of Presence of Atlantic Salmon in Area Response Planning Pilot Areas

Atlantic salmon postsmolts were surveyed via surface trawling during 2001 and 2003. These data were provided to the Coastal Oceanography and Ecosystem Research section of Fisheries and Oceans Canada. These data, and information from subsequent tagging studies were considered to estimate the likelihood of presence of Atlantic salmon within the Area Response Plan regions. Atlantic salmon presence varies seasonally and this spatial information should be used in conjunction with the temporal information in the attribute table.

A version of this dataset was created for the National Environmental Emergency Center (NEEC) following their data model and is available for download in the Resources section.

Cite this data as: Lazin, G., Hamer, A.,Corrigan, S., Bower, B., and Harvey, C. Data of: Likelihood of presence of Atlantic Salmon in Area Response Planning pilot areas. Published: June 2018. Coastal Ecosystems Science Division, Fisheries and Oceans Canada, St. Andrews, N.B. https://open.canada.ca/data/en/dataset/436cdf90-9d6b-4784-938b-feec48844a67

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
NAFO Subareas, Divisions, and Subdivisions

The Northwest Atlantic Fisheries Organization (NAFO) Secretariat, Fisheries and Oceans Canada (DFO) and the Canadian Hydrographic Service (CHS) have collaborated to update the spatial representation of the NAFO Subareas, Divisions, and Subdivisions as defined in Annex 1 to the Convention on Cooperation in the Northwest Atlantic Fisheries (2020) (https://www.nafo.int/Portals/0/PDFs/key-publications/NAFOConvention.pdf). 

The NAFO Convention does not indicate which datum should be used for spatial representation. The datum used at the time of development of the NAFO Convention would have been North American Datum 1927 (NAD27). However, all datasets were derived using NAD83.

International boundaries have been updated based on accepted coordinates between the USA and Canada (http://www.internationalboundarycommission.org/en/maps-coordinates/coordinates.php), and Canada and Greenland (https://www.treaty-accord.gc.ca/text-texte.aspx?id=105136).

This version of the NAFO Divisions is not intended to be used for legal purposes and is being provided for mapping / illustrative purposes only.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Shrimp and Fish Abundance Observed by a Towed-Video Along Trawling and Trapping Transects in Simoom Sound, British Columbia

These data sets provide information pertaining to abundant taxa including bottom-dwelling shrimp and fish along trawling and trapping transects in Simoom Sound at November, 2000, and February, 2001. Data sets were compiled and formatted by Meagan Mak.

Abstract from report:
This study is a component of a larger project designed to compare the effects of shrimp trawling and trapping gear on shrimp, fish and the benthic habitat of Simoom Sound located in Broughton Archipelago, British Columbia, Canada. Otter-trawling, beam-trawling, and trapping took place in three distinct experiment blocks of the central seabed of the Sound. In turn, each block consisted of replicate transects, where a towed submersible video-camera surveyed shrimp and fish before and after trawling. Video surveys were deployed only before trapping. From the video surveys, we determined the abundance of common shrimp taxa and fish.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Carmine Shiner Conservation Physiology

Results from temperature preference experiments demonstrated that individual personality was consistent and repeatability. Individual preferred and maximum avoidance temperatures were significantly reduced in hypoxia compared to normoxia. Standard metabolic rate increased with temperature and body mass. Patterns of projected habitat change suggest the spatial extent of the current distribution of Carmine shiner would shift north with global warming. The understanding of habitat requirements and responses to climate will aid management and recovery efforts for this threatened species.

Cite this dataset as: Enders, Eva. Data of: Carmine Shiner Conservation Physiology. Arctic and Aquatic Research Division, Fisheries and Oceans Canada, Winnipeg Manitoba. https://open.canada.ca/data/en/dataset/a6a606a4-8cdc-48e9-812c-7bdcd84840e7

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Commercial catches sampling program in the Estuary and Gulf of St. Lawrence

The Quebec region of the Department of Fisheries and Oceans (DFO) is responsible for the assessment of several fish and invertebrate stocks exploited in the Estuary and the northern Gulf of St. Lawrence. The commercial catches sampling program is one of the sources of information used to complete these assessments. The data collected by this program, at wharf or at sea, offers among other things the advantage of a relatively large spatio-temporal coverage and provides some of the necessary knowledge to assess the demography and the structure of the exploited populations. This program is implemented by specialized DFO staff whose main mandate is to collect biological data on groundfish, pelagic fish and marine invertebrate species that are commercially exploited in the various marine communities.

The following species have been sampled by this program from 1976 to present:

1. American lobster (Homarus americanus)
2. American plaice (Hippoglossoides platessoides)
3. Atlantic cod (Gadus morhua)
4. Atlantic halibut (Hippoglossus hippoglossus)
5. Atlantic herring (Clupea harengus)
6. Atlantic lyre crab (Hyas araneus)
7. Atlantic mackerel (Scomber scombrus)
8. Atlantic surfclam (Spisula solidissima)
9. Arctic Lyre Crab (Hyas coarctatus)
10. Capelin (Mallotus villosus)
11. Common softshell clam (Mya arenaria)
12. Giant scallop (Placopecten magellanicus)
13. Greenland halibut (Reinhardtius hippoglossoides)
14. Green urchin (Strongylocentrotus droebachiensis)
15. Iceland scallop (Chlamys islandica)
16. Redfish (Sebastes sp.)
17. Rock crab (Cancer irroratus)
18. Sea cucumber (Cucumaria frondosa)
19. Snow crab (Chionoecetes opilio)
20. Stimpson surfclam (Mactromeris polynyma)
21. Waved whelk (Buccinum undatum)
22. White hake (Urophycis tenuis)
23. Winter flounder (Pseudopleuronectes americanus)
24. Yellowtail flounder (Limanda ferruginea)

For more information concerning these species, see the «Related Products» section below.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Commercial catches sampling program in the Estuary and Gulf of St. Lawrence – giant scallop (Placopecten magellanicus)

Summary
The Quebec region of the Department of Fisheries and Oceans (DFO) is responsible for the assessment of several fish and invertebrate stocks exploited in the Estuary and the northern Gulf of St. Lawrence. The commercial catches sampling program is one of the sources of information used to complete these assessments. The data collected by this program, at wharf or at sea, offers among other things the advantage of a relatively large spatio-temporal coverage and provides some of the necessary knowledge to assess the demography and the structure of the exploited populations. This program is implemented by specialized DFO staff whose main mandate is to collect biological data on groundfish, pelagic fish and marine invertebrate species that are commercially exploited in the various marine communities.

Data
This dataset on the giant scallop (Placopecten magellanicus) includes the metadata, shell height and the number of shells (empty or full) for all the specimens measured. This dataset covers the period of 1985 to present. In order to protect the confidentiality of the sources, some informations (such as those concerning the vessel) have been excluded and others (such as the date of capture) have been simplified. Entries where there was only one vessel in a fishing area for a given year were also excluded. Further information including the fishing areas coordinates can be found by clicking on the «Atlantic and Arctic commercial fisheries» and «Fishing areas» links below.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Commercial catches sampling program in the Estuary and Gulf of St. Lawrence – capelin (Mallotus villosus)

Summary
The Quebec region of the Department of Fisheries and Oceans (DFO) is responsible for the assessment of several fish and invertebrate stocks exploited in the Estuary and the northern Gulf of St. Lawrence. The commercial catches sampling program is one of the sources of information used to complete these assessments. The data collected by this program, at wharf or at sea, offers among other things the advantage of a relatively large spatio-temporal coverage and provides some of the necessary knowledge to assess the demography and the structure of the exploited populations. This program is implemented by specialized DFO staff whose main mandate is to collect biological data on groundfish, pelagic fish and marine invertebrate species that are commercially exploited in the various marine communities.

Data
This dataset on the capelin (Mallotus villosus) includes the metadata, sample weight, fish length, the sex and the number of specimens measured. This dataset covers the period of 1988 to present. In order to protect the confidentiality of the sources, some informations (such as those concerning the vessel) have been excluded and others (such as the date of capture) have been simplified. Entries where there was only one vessel in a fishing area for a given year were also excluded. Further information including the fishing areas coordinates can be found by clicking on the «Atlantic and Arctic commercial fisheries» and «Fishing areas» links below.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Vessel Density Mapping of 2020 AIS Data in the Northwest Atlantic

The Automatic Identification System (AIS) is a global, satellite-based and terrestrial-based ship tracking system that uses shipborne equipment to remotely track vessel identification and positional information and is typically required on vessels of 300 gross tonnage or more on an international voyage, of 500 gross tonnage or more not on an international voyage, and passenger ships of all sizes. AIS tracking technologies are primarily used in support of real-time maritime domain awareness and for maritime security and safety of life at sea. This report describes a geographic information system (GIS) analysis of 2019 AIS data to produce yearly and monthly vessel density maps of all vessel classes combined and yearly density maps of each vessel class. The year 2019 was selected to portray shipping densities in a pre-COVID 19 pandemic depiction of the maritime transport sector in the Northwest Atlantic. Vessel density map applications include use in spatial analysis and decision support for marine spatial planning. In 2023 the process was applied to the years 2013 through to 2022 and were made available using the same processes that were applied to the original 2019 datasets.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Characterisation of the sublittoral habitats of the Brier Island/Digby Neck Ecologically and Biologically Significant Area, Nova Scotia, Canada

The Brier Island/Digby Neck area has been identified as an Ecologically and Biologically Significant Area (EBSA) by Fisheries and Oceans Canada and is one of four marine areas within the Bay of Fundy recognised by Parks Canada as of national significance for marine conservation planning. The area is representative of important outer Bay of Fundy features with significant marine mammal, bird, and benthic diversity including potentially important aggregations of sensitive benthic species such as horse mussel and sponge. Much of the information used for this recognition is now over 40 years old and should be re-validated using standardised georeferenced survey methods. As a first phase, a diver-based survey of the sublittoral habitats and associated species was conducted in August and September of 2017 for the Brier Island area. This report summarises the major sublittoral habitat types, species assemblages, and oceanographic conditions observed at 20 locations including Northwest and Southwest Ledges, Gull Rock, Peter’s Island, and Grand Passage. A total of 962 records were made of 178 taxa, consisting of 43 algae and 135 animals. Comparison with historical records largely confirmed the continued presence of unique habitats and species assemblages for which this area was initially recognised as an EBSA. Differences in species richness observed for cryptic and less known taxonomic groups such as sponges and bryozoans were attributable to changes in survey methods and knowledge. Based on these findings, additional surveys of inshore and offshore Brier Island using more quantitative methods developed for other Bay of Fundy EBSAs would further support regional MPA network planning and provide relative scales of species diversity and habitat coverage for this area.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Fisheries Dependent Data for Sea Scallop in the Southern Gulf of St. Lawrence

PURPOSE:
This data relates to the Canadian Science Advice Secretariat (CSAS) Regional Science Advisory Process from the Limit Reference Point and Population Model Review of the Southern Gulf of Saint Lawrence Sea Scallop peer review meeting held on November 1-2, 2023. The SFAs 22 and 24 have been identified as the core scallop habitat within the sGSL for this process. Associated publications from this meeting will be posted on the Fisheries and Oceans Canada (DFO) Science Advisory Schedule as they become available.
            
DESCRIPTION:
Data on landings, fishing efforts, and catch per unit effort (CPUE) used in the stock assessment for southern Gulf of St. Lawrence (sGSL) sea scallop (_Placopecten magellanicus_) stock assessments and the limit reference point.

The dataset contains corrected information from the following data sources:
- DFO annual historic reports on landings and efforts
- published documents about population assessments and surveys
- logbooks, produced by DFO’s regional statistics
- purchase slips, produced by DFO’s regional statistics
- Catch per unit effort calculated by DFO's Science Branch

Prior to 1947, data represents the combined landings that cannot be attributed to individual Scallop Fishing Areas (SFAs).
            
USE LIMITATION:
To ensure scientific integrity and appropriate use of the data, we would encourage you to contact the data custodian.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Evaluation of Methods for Identification of Early Detection Monitoring Sites Based on Habitat Suitability for Invasive European Green Crab in the Salish Sea, British Columbia

The European Green Crab (EGC) is a high-risk global invader that can devastate coastal marine ecosystems by displacing native species, degrading and disturbing native habitats (including eelgrass), and altering food webs. EGC has recently been detected in the Canadian portion of the Salish Sea. As EGC continue to establish in the region, identifying locations on which to focus limited monitoring resources is an ongoing problem given the vast amount of coastal habitat that could be occupied by the species. A variety of methods can be used to identify highly suitable habitats for EGC at a range of spatial scales. However, none have been evaluated in the context of informing EGC management, nor for the Canadian portion of the Salish Sea. Here we evaluate five individual methods developed to assess habitat suitability for EGC (i.e., MaxEnt, stochastic gradient boosted linear and logistic regression models, a rapid site selection tool, and a qualitative site assessment and ranking tool) and five derived models generated by multiplying the outputs of these individual models. Each model relied on slightly different environmental and habitat input variables affecting EGC invasion success. Thus, rather than identifying a single preferred model, we used a multi-model ensemble approach to identify sites that are expected to be most suitable for the species. The ensemble approach likely increases predictive power by including both environmental and habitat characteristics when identifying priority sites for early detection/monitoring for EGC in the Canadian waters of the Salish Sea. Finally, we describe how the models evaluated here, alone or in combination, could be used to identify additional sites either within the Salish Sea or into new areas.
This dataset contains predicted habitat suitability from five models for European Green Crab at beaches in the Salish Sea (British Columbia, Pacific Region).

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Bay Scale Assessment of Eelgrass Using Sidescan and Video - Cocagne 2008

The assessment of the status of eelgrass (Zostera marina) beds at the bay-scale in turbid, shallow estuaries is problematic. The bay-scale assessment (i.e., tens of km) of eelgrass beds usually involves remote sensing methods such as aerial photography or satellite imagery. These methods can fail if the water column is turbid, as is the case for many shallow estuaries on Canada’s eastern seaboard. A novel towfish package was developed for the bay-scale assessment of eelgrass beds irrespective of water column turbidity. The towfish consisted of an underwater video camera with scaling lasers, sidescan sonar and a transponder-based positioning system. The towfish was deployed along predetermined transects in three northern New Brunswick estuaries. Maps were created of eelgrass cover and health (epiphyte load) and ancillary bottom features such as benthic algal growth, bacterial mats (Beggiatoa) and oysters. All three estuaries had accumulations of material reminiscent of the oomycete Leptomitus, although it was not positively identified in our study. Tabusintac held the most extensive eelgrass beds of the best health. Cocagne had the lowest scores for eelgrass health, while Bouctouche was slightly better. The towfish method proved to be cost effective and useful for the bay-scale assessment of eelgrass beds to sub-meter precision in real time.

Cite this data as: Vandermeulen H. Data of: Bay Scale Assessment of Eelgrass Using Sidescan and Video - Cocagne 2008. Published: November 2019. Coastal Ecosystems Science Division, Fisheries and Oceans Canada, Dartmouth, N.S. https://open.canada.ca/data/en/dataset/431c815e-65f0-477b-9389-060fa41ec955

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Tidal marshes in the maritime coastal zone of Quebec

This dataset was designed for Environment and Climate Change Canada's (ECCC) National Environmental Emergencies Center (NEEC) for oil spill preparedness and response. The polygons from this layer come from the coastal ecosystems geodatabase as part of the Mapping of coastal ecosystems of the Estuary and Gulf of St. Lawrence project. This layer represents semi-vegetated (25-75%) and vegetated (75-100%) zones of which marsh vegetation is the dominant. The study area includes all of the estuarine and maritime coasts of Quebec, with the exception of certain sectors, including most of the Lower North Shore and Anticosti Island, with the exception of villages of Kegaska, la Romaine, Chevery, Blanc-Sablon and Port-Menier. Some islands off the estuary and gulf coasts are part of the region covered, such as Île d'Orléans, Isle-aux-Coudres, Île Verte and Île Bonaventure.

The mapping of coastal ecosystems was carried out jointly by the Laboratory for Dynamics and Integrated Coastal Zone Management (LDGIZC) of the University of Quebec at Rimouski as part of the Coastal Resilience Project (https: //ldgizc.uqar.ca/Web/projets/projet-resilience-cotiere) funded by the MELCC; and by the Fisheries and Oceans Canada team, as part of its Integrated marine response planning (IMRP) component of the Oceans Protection Plan (OPP), with the objective of updating the Marine Oil Spill Preparedness and Response Regime of Canada. The master geodatabase of coastal ecosystems is hosted and distributed by UQAR on their SIGEC-Web mapping platform: https://ldgizc.uqar.ca/Web/sigecweb

The characterization of marshes was mainly carried out using photo-interpretation of RVBI aerial photos acquired by DFO (2015-2020) and oblique photos taken by helicopter acquired by UQAR in 2017. This dataset also includes the information from validation stations visited by UQAR (2018-2020), used to validate and refine the photo-interpretation.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Central and North BC

Fisheries and Oceans Canada (DFO) has been conducting surface water trawl surveys since 1992 in the coastal waters of British Columbia, Washington, Oregon and Alaska and in the high seas of the Gulf of Alaska. These surveys initially focused on determining the migratory patterns (1992-2002) and on the growth and physiology (2003-2016) of juvenile Pacific Salmon. Since 2016, these surveys have been broadened to monitor the whole pelagic ecosystem, retaining a focus on juvenile Pacific Salmon.  Surveys were conducted in central north coast and inlets of British Columbia from Southern Queen Charlotte Sound to Northern Haida Gwaii, including the west coast of Haida Gwaii and Hecate Strait, from 1995 to 2020. All records are from shelf waters shallower than 400 meters.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada