AndreaBozzo/ceres-open-data-index huggingface dataset:
Winter conditions in the Saguenay and St. Lawrence – Helicopter survey (raw data)

For several years, Fisheries and Oceans Canada (DFO) has conducted annual ship-based surveys in the St. Lawrence Estuary and the Gulf of St. Lawrence to assess environmental conditions and support a range of scientific objectives. Because these surveys do not extend into winter, a complementary regional monitoring program has been implemented annually in early March since 1996. This monitoring program is typically carried out using a Canadian Coast Guard helicopter, although in 2016 and 2017 it was conducted aboard an icebreaker. The winter survey measures physical oceanographic conditions to approximately 200 m depth along with nutrient concentrations in the surface layer. Starting in 2023, the survey was expanded to include phytoplankton measurements.

Data from this program are integrated with those from the Atlantic Zone Monitoring Program (AZMP) to produce annual reports including physical (CTD) and biological (bottle) assessments and a Zonal Scientific Advisory for the Gulf of St. Lawrence which can be found on the following webpage under the given year : Atlantic Zone Monitoring Program (AZMP) - https://www.dfo-mpo.gc.ca/science/data-donnees/azmp-pmza/index-eng.html

Here, raw data on physical oceanographic conditions, nutrient concentrations and phytoplankton collected during the winter survey are presented. This publication contains three data files: ‘donnees_data_heli_CTD’ which contains links per year to the CTD data, ‘donnees_data_heli_bottle_bouteille’, which contains nutrient data, and  ‘donnees_data_heli_phyto’ which contains phytoplankton data. The dataset covers the period of 1996 to present and is updated annually as new data becomes available. 

Note: this publication contains raw data, please use with caution or contact the data management team (gddaiss-dmsaisb@dfo-mpo.gc.ca) if you have any questions. 

For further methodological information please see the supporting document for citations.

For mean winter surface conditions in the Estuary and Gulf of St. Lawrence please see the following related publication Winter surface conditions – Helicopter survey - Open Government Portal - https://open.canada.ca/data/en/dataset/9a42d891-fc9c-44b3-8fba-9d9ed96890cf

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Seasonal pH climatology of the Canadian Pacific Exclusive Economic Zone from BCCM model (1993-2020)

Description:
Seasonal mean pH from the British Columbia continental margin model (BCCM) were averaged over the 1993 to 2020 period to create seasonal mean climatology of the Canadian Pacific Exclusive Economic Zone. 

Methods:
The pH at up to forty-six linearly interpolated vertical levels from surface to 2400 m and at the sea bottom are included. Spring months were defined as April to June, summer months were defined as July to September, fall months were defined as October to December, and winter months were defined as January to March. The data available here contain raster layers of seasonal pH climatology for the Canadian Pacific Exclusive Economic Zone at 3 km spatial resolution and 47 vertical levels.

Uncertainties:
Model results have been extensively evaluated against observations (e.g. altimetry, CTD and nutrient profiles, observed geostrophic currents), which showed the model can reproduce with reasonable accuracy the main oceanographic features of the region including salient features of the seasonal cycle and the vertical and cross-shore gradient of water properties. However, the model resolution is too coarse to allow for an adequate representation of inlets, nearshore areas, and the Strait of Georgia.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Monitoring Facility Counts of Atlantic Salmon on Newfoundland and Labrador Rivers

Fisheries and Oceans Canada (DFO), in partnership with other government organizations, indigenous groups, and community stakeholders, monitor the migratory return of Atlantic salmon to rivers each season. In Newfoundland and Labrador, there are 15 management areas, known as Salmon Fishing Areas (SFAs), with over 400 rivers containing populations of spawning salmon. Each year, salmon populations are enumerated at monitoring facilities (counting fences or fishways) on several rivers throughout the province. Monitoring begins in April or May for the downstream smolt run and in June or July for the upstream adult run and varies in timing by year and river. Not all rivers are monitored annually and years with incomplete data are often attributable to environmental factors that delay or stop monitoring during a season (e.g. fence washout due to elevated water levels). Days with zero counts can be attributable to no fish and/or closures to the monitoring facility. While monitoring facilities are used primarily to count Atlantic salmon, other freshwater fish may also be enumerated if encountered. The counts from these monitoring facilities, in addition to angling information and other monitoring activities, provide information for estimating returns for the annual stock assessment, which is an important part of conservation and management of Atlantic salmon populations in Newfoundland and Labrador.  This data contains information for Atlantic salmon only.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Sponge Reef Areas of the Pacific Region

Sponge reefs are constructed by hexactinellid (glass) sponges of the Order Hexactinosida. The sponges trap fine sediments, and over centuries of sponge growth and sediment trapping, form large bioherms or reef mounds. Glass sponge reefs are unique habitats found along the Pacific coast of Canada and the United States and they have significant historic, ecological, and economic value. They link benthic and pelagic environments by playing important roles in filtration and carbon and nitrogen processing, and acting as silica sinks. They also form habitat for diverse communities of invertebrates and fish, including those of economic importance. Thus, accurate and up-to-date information on the location and spatial extent of sponge reefs is important to the management and conservation of many of Canada’s Pacific marine species. We generated a map of known sponge reefs, derived from two source shape files: 1) Sponge_Reef_West_Coast, mapped by Natural Resources Canada (NRCan), 2) Howesound_Nine_reef_polygons and 3) HoweSound_Five_reef_polygons, which were mapped by DFO and NRCan. The resultant polygon shapefile is published on the GIS hub as a file geodatabase feature class.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Beaufort Sea Marine Fishes Project (BSMFP) 2013 - Fish identification and measurements

PURPOSE:
From August 2nd to September 9th, 2013, Fisheries and Oceans Canada conducted a baseline survey of marine fishes and their habitats in the southern Canadian Beaufort Sea and Amundsen Gulf as part of the Beaufort Regional Environmental Assessment (BREA) called the Beaufort Sea Marine Fishes Project (BSMFP). Sampling was conducted from the F/V Frosti at 53 stations along 8 transects. Standardized sampling was conducted using benthic trawling nets. The BSMFP is the first research project to use a large research trawls to assess the biodiversity and abundance of offshore marine fishes in this area. In total, 48 species of fish were caught, one of which was a new occurrence in the Canadian Beaufort Sea, Lycodes lavalaei.
            

DESCRIPTION:
Basic biological data for all fish caught during the 2013 BSMFP expedition. Includes identification, weight, length (total, fork, and, standard), liver weight, gonad weight, sex and maturity level.
            

PARAMETERS COLLECTED:
family
species
weight
total length
fork length
standard length
liver weight
gonad weight
sex
maturity

SAMPLING METHODS:
Various trawl types.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Lumpfish catch rates since 1990 in the Estuary and Gulf of St. Lawrence (NAFO divisions 3PN and 4RST)

Spatial distribution of lumpfish catch rates (number per tow) during the August DFO research survey conducted annually since 1990, to assess the state of groundfish and shrimp stocks in the northern Gulf of St. Lawrence.

The area sampled by a tow is the product of the distance trawled (fishing time multiplied by vessel speed) and the wing spread (13.41 m for the Alfred Needler and 16.94 m for the Teleost). Given that this area may vary among tows, the sampling unit is standardized and defined as being a station sampled by a tow over a distance of 0.75 nautical miles (1,389 m) with a horizontal wing spread of 16.94 m. Catch variables were calculated based on the standard area, 0.02353 km².

After each tow, the catch was sorted by taxa, and the number of individuals and total biomass of these taxa were noted. For taxa identified to the species level, individual biometric parameters (e.g., length, weight) and biological parameters (e.g., sex, maturity of gonads) were recorded based on a subsample. Full methods are described in Bourdages et al. (2010).

Note that the increase in catch rate for the 2005-2009 period coincides with a change in gear for this survey.

Bourdages, H., and Ouellet, J.-F. 2011. Geographic distribution and abundance indices of marine fish in the northern Gulf of St. Lawrence (1990–2009). Can. Tech. Rep. Fish. Aquat. Sci. 2963: vi + 171 p.

Source:

Gauthier, J., Grégoire, F., and Nozères, C. 2017. Assessment of Lumpfish (Cyclopterus lumpus) in the Gulf of St. Lawrence (3Pn, 4RS) in 2015. DFO Can. Sci. Advis. Sec. Res. Doc. 2017/051. v + 47 p.

Purpose

The multidisciplinary survey of groundfish and shrimp in the northern Gulf of St. Lawrence has been conducted every August by Fisheries and Oceans Canada for more than two decades. Initially, its objective was to determine the abundance and geographic distribution of commercially important taxa. However, for couple of years, the objective was expanded to include all taxa caught with the shift toward the ecosystem approach.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Important Areas for Other Vertebrates in Strait of Georgia Ecoregion

This layer details Important Areas (IAs) relevant to key vertebrate species, other than fish and cetaceans, in the Strait of Georgia (SOG) ecoregion. This data was mapped to inform the selection of marine Ecologically and Biologically Significant Areas (EBSA). Experts have indicated that these areas are relevant based upon their high ranking in one or more of three criteria (Uniqueness, Aggregation, and Fitness Consequences). The distribution of IAs within ecoregions is used in the designation of EBSAs.

Canada’s Oceans Act provides the legislative framework for an integrated ecosystem approach to management in Canadian oceans, particularly in areas considered ecologically or biologically significant. DFO has developed general guidance for the identification of ecologically or biologically significant areas. The criteria for defining such areas include uniqueness, aggregation, fitness consequences, resilience, and naturalness. This science advisory process identifies proposed EBSAs in Canadian Pacific marine waters, specifically in the Strait of Georgia (SOG), along the west coast of Vancouver Island (WCVI, southern shelf ecoregion), and in the Pacific North Coast Integrated Management Area (PNCIMA, northern shelf ecoregion).

Initial assessment of IA's in PNCIMA was carried out in September 2004 to March 2005 with spatial data collection coordinated by Cathryn Clarke. Subsequent efforts in WCVI and SOG were conducted in 2009, and may have used different scientific advisors, temporal extents, data, and assessment methods. WCVI and SOG IA assessment in some cases revisits data collected for PNCIMA, but should be treated as a separate effort.

Other datasets in this series detail IAs for birds, cetaceans, corals and sponges, fish, geographic features, and invertebrates.

Though data collection is considered complete, the emergence of significant new data may merit revisiting of IA's on a case by case basis.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Bay Scale Assessment of Nearshore Habitat Bras d'Or Lake - St. Andrews 2011

Bay Scale Assessment of Nearshore Habitat Bras d'Or Lake - St. Andrews 2011 data is part of the publication Bay Scale Assessment of Nearshore Habitat Bras d'Or Lakes. 

A history of nearshore benthic surveys of Bras d’Or Lake from 2005 – 2011 is presented. 

Early work utilized drop camera and fixed mount sidescan. The next phase was one of towfish development, where camera and sidescan were placed on one platform with transponder-based positioning. From 2009 to 2011 the new towfish was used to ground truth an echosounder. The surveys were performed primarily in the northern half of the lake; from 10 m depth right into the shallows at less than 1 m. Different shorelines could be distinguished from others based upon the relative proportions of substrate types and macrophyte canopy. The vast majority of macrophytes occurred within the first 3 m of depth. This zone was dominated by a thin but consistent cover of eelgrass (Zostera marina L.) on almost all shores with a current or wave regime conducive to the growth of this plant. However, the eelgrass beds were frequently in poor shape and the negative impacts of commonly occurring water column turbidity, siltation, or possible localized eutrophication, are suspected. All survey data were placed into a Geographic Information System, and this document is a guide to that package. The Geographic Information System could be used to answer management questions such as the placement and character of habitat compensation projects, the selection of nearshore protected areas or as a baseline to determine long term changes.,

Vandermeulen, H. 2016. Video-sidescan and echosounder surveys of nearshore Bras d’Or Lake. Can. Tech. Rep. Fish. Aquat. Sci. 3183: viii + 39 p.

Cite this data as: Vandermeulen H. Bay Scale Assessment of Nearshore Habitat Bras d'Or Lake - St. Andrews 2011. Published May 2022. Coastal Ecosystems Science Division, Fisheries and Oceans Canada, Dartmouth, N.S.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Variation in ringed seal (Pusan hispida) density along a latitudinal gradient of sea-ice conditions

PURPOSE:
Ringed seals (Pusa hispida) rely on sea ice as habitat throughout their life history and inhabit a broad latitudinal range with diverse sea-ice conditions. Anthropogenic climate warming is triggering poleward species redistributions, highlighting the importance of understanding how species distributions and abundance vary along latitudinal gradients. Using ringed seals as a model species, the purpose was to estimate density via aerial surveys along a latitudinal gradient in the eastern Canadian Arctic to investigate latitudinal trends in the ringed seals response to regional variation in sea-ice conditions.
            

DESCRIPTION:
Ringed seals (Pusa hispida) rely on sea ice as habitat throughout their life history and inhabit a broad latitudinal range with diverse sea-ice conditions, making them a model species to study patterns in density along a spatial-environmental gradient. We estimated the density of ringed seals from systematic aerial surveys along a latitudinal gradient in the eastern Canadian Arctic to investigate latitudinal trends in the ringed seals response to regional variation in sea-ice conditions. Ringed seals exhibited similar densities at lower and intermediate latitudes, while higher latitudes displayed an order of magnitude lower ringed seal density. This shift is concurrent with the transition in ice conditions from predominantly first-year ice at lower latitudes to primarily multiyear ice at higher latitudes. These findings indicate that the variation in icescapes across the ringed seal’s vast range influences their density. The shift in sea-ice conditions may also have consequences for biological productivity that supports their diet. Our results highlight a likely non-uniform response of ringed seals to ongoing sea-ice recession across the Arctic.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Bay Scale Assessment of Eelgrass Beds Using Sidescan and Video - Bouctouche

The assessment of the status of eelgrass (Zostera marina) beds at the bay-scale in turbid, shallow estuaries is problematic. The bay-scale assessment (i.e., tens of km) of eelgrass beds usually involves remote sensing methods such as aerial photography or satellite imagery. These methods can fail if the water column is turbid, as is the case for many shallow estuaries on Canada’s eastern seaboard. A novel towfish package was developed for the bay-scale assessment of eelgrass beds irrespective of water column turbidity. The towfish consisted of an underwater video camera with scaling lasers, sidescan sonar and a transponder-based positioning system. The towfish was deployed along predetermined transects in three northern New Brunswick estuaries. Maps were created of eelgrass cover and health (epiphyte load) and ancillary bottom features such as benthic algal growth, bacterial mats (Beggiatoa) and oysters. All three estuaries had accumulations of material reminiscent of the oomycete Leptomitus, although it was not positively identified in our study. Tabusintac held the most extensive eelgrass beds of the best health. Cocagne had the lowest scores for eelgrass health, while Bouctouche was slightly better. The towfish method proved to be cost effective and useful for the bay-scale assessment of eelgrass beds to sub-meter precision in real time.

Cite this data as: Vandermeulen H. Data of: Bay Scale Assessment of Eelgrass Beds Using Sidescan and Video - Bouctouche. Published: November 2017. Coastal Ecosystems Science Division, Fisheries and Oceans Canada, Dartmouth, N.S. https://open.canada.ca/data/en/dataset/b4c83cd2-20f2-47d8-8614-08c1c44c9d8c

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Aquatic Invasive Species European Green Crab (Carcinus maenas) Monitoring, British Columbia

Aquatic invasive species pose economic and ecological threats to Canada's coastal waters. In response, Fisheries and Oceans Canada (DFO) has established monitoring programs to detect and track the spread of aquatic invasive species, including European Green Crab, in Canadian waters. Fukui traps have been deployed annually at both new and long-term monitoring locations throughout coastal British Columbia.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Seasonal sigma-t climatology of the Canadian Pacific Exclusive Economic Zone (1980-2010)

Description:
Seasonal sigma-t climatology of the Northeast Pacific Ocean was computed from historical observations including all available conductivity-temperature-depth (CTD), bottle, expendable bathy-thermograph (XBT), and Argo data in NOAA (http://www.argo.ucsd.edu/), Marine Environmental Data Service (MEDS), and Institute of Ocean Sciences archives over 1980 to 2010 period.

Methods:
Calculations, including smooth and interpolation, were carried out in sixty-five subregions and up to fifty-two vertical levels from surface to 5000m. Seasonal averages were computed as the median of yearly seasonal values. Spring months were defined as April to June, summer months were defined as July to September, fall months were defined as October to December, and winter months were defined as January to March. The data available here contain raster layers of seasonal sigma-t climatology for the Canadian Pacific Exclusive Economic Zone (EEZ), a subset of seasonal climatology of the Northeast Pacific Ocean, in high spatial resolution of 1/300 degree.

References:
Foreman, M. G. G., W. R. Crawford, J. Y. Cherniawsky, and J. Galbraith (2008). Dynamic ocean topography for the northeast Pacific and its continental margins, Geophys. Res. Lett., 35, L22606, doi: 10.1029/2008GL035152

Data Sources:
NOAA, MEDS and IOS observational data

Uncertainties:
Uncertainties are introduced when quality controlled observational data are spatially interpolated to varying distances from the observation point. Climatological averages are calculated from these interpolated values.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Regional Freshwater Index Layers

Description:
The Regional Freshwater Index Layers dataset is composed of five single-band raster layers in GeoTIFF format. Each layer corresponds to a marine region, which generally coincide with the following layers from the Species Distribution Modelling Boundaries dataset: Nearshore_HG, Nearshore_NCC, Nearshore_QCS, Nearshore_WCVI, and Shelf_SalishSea. 

The main purpose of the dataset is to supplement existing layers that are used for species distribution modelling in the Pacific nearshore marine environment. Each regional freshwater index layer has the same spatial resolution and extent as other predictor layers for the corresponding region. While salinity layers exist from oceanographic models, they may not capture local difference from smaller scale rivers and streams entering the marine environment. Therefore, these layers are meant to complement salinity layers and are not suitable as a replacement for salinity data in species modelling.

Methods:
The cell values represent an estimate of freshwater influence on a 0-1 scale, where a higher value represents a greater level of freshwater influence. Details on how these values are determined is described in the supplemental information section of the metadata. The main data source for these derived products is the B.C. Freshwater Atlas, including the stream network and river polygons layers.

Uncertainties:
The values in the rasters are not a measure of salinity. The units are an index representing the level of freshwater influence weighted by the stream order and rescaled across regions on a 0-1 scale where only the region with the greatest value has a range of values 0-1 and the other regions are scaled relatively. This is done to ensure that values in one region can be compared to values in another region. As a result, some regions have very small values because the Salish Sea with the Fraser River is dominant, even after applying a rescale factor to the data.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Data of eelgrass (Zostera marina) plant size (length, width), cover, and biomass from the Atlantic Coast of Nova Scotia

This dataset includes metrics of eelgrass size, cover, and biomass from field sites along the Atlantic coast of Nova Scotia, Canada.  Field sites were located across a gradient of environmental conditions, and field sampling was conducted in July to August 2022.  Eelgrass percent cover, shoot density, and plants were sampled at 10 haphazardly distributed sampling stations within each eelgrass bed at approximately the same depth.  Stations were ~10m apart and at least 2m from any eelgrass-bare interface.  At each sampling station eelgrass leaves in a 0.5 x 0.5m quadrat were photographed for later computer image analysis to determine percent cover.  The number of shoots were then counted in a 0.25 x 0.25m quadrat, and 3 vegetative shoots were collected.  Shoots were measured for leaf length, width, and weight in the laboratory.  These data were used to determine allometric and cover-biomass relationships for use in non-destructive estimation of bed biomass.  

Cite this data as: Wong, M.C., & Thomson, J. A. Data of eelgrass (Zostera marina) plant size (length, width), cover, and biomass from the Atlantic Coast of Nova Scotia. Published: February 2025. Coastal Ecosystems Science Division, Maritimes Region, Fisheries and Oceans Canada, Dartmouth NS.

For additional information please see:

Thomson, J. A., Vercaemer, B., & Wong, M. C. (2025). Non-destructive biomass estimation for eelgrass (Zostera marina): Allometric and percent cover-biomass relationships vary with environmental conditions. Aquatic Botany, 198, 103853. https://doi.org/10.1016/j.aquabot.2024.103853

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada