AndreaBozzo/ceres-open-data-index huggingface dataset:
British Columbia Geoduck (Panopea generosa) Age, Size Structure and Growth Parameters, 1993 - 2002

Biological samples of Geoduck Clams have been collected during surveys in British Columbia as part of the broader survey objectives of determining Geoduck density, distribution and population structure. Samples of Geoducks were collected from 41 locations throughout British Columbia between 1993 and 2002. Clams were measured for total weight, shell length, shell weight and were aged. Biological parameters are presented here for individual clams sampled. See Bureau D., W. Hajas, N.W. Surry, C.M. Hand, G. Dovey and A. Campbell. 2002. Age, size structure and growth parameters of Geoducks (Panopea abrupta, Conrad 1849) from 34 locations in British Columbia sampled between 1993 and 2000. Can Tech. Rep. Fish. Aquat. Sci. 2413: 84 p. and Bureau D., W. Hajas, C.M. Hand and G. Dovey. 2003. Age, size structure and growth parameters of Geoducks (Panopea abrupta, Conrad 1849) from seven locations in British Columbia sampled in 2001 and 2002. Can. Tech. Rep. Fish. Aquat. Sci. 2494: 29 p.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Phytoplankton pigments along the west coast of Vancouver Island

Phytoplankton pigments, determined by high-performance liquid chromatography (HPLC) have been measured on DFO La Perouse cruises since 2011. Surface samples are taken along a series of transects off the west coast of Vancouver Island twice a year usually in May/June and early September.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Canadian Anchorages and Anchorage Areas

Canadian Anchorages and Anchorage Areas is comprised of four shapefiles which include anchorage areas (ACHARE) and single ship anchorages (ACHBRT). The shapefiles are either one with points and one with polygons for each of the two types of anchorages. These files are a comprehensive dataset of anchorages and anchorage areas in Canadian navigable waters. This dataset will be updated as needed.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Seasonal temperature climatology of the Canadian Pacific Exclusive Economic Zone (1980-2010)

Description:
Seasonal temperature climatology of the Northeast Pacific Ocean was computed from historical observations including all available conductivity-temperature-depth (CTD), bottle, expendable bathy-thermograph (XBT), and Argo data in NOAA (http://www.argo.ucsd.edu/), Marine Environmental Data Service (MEDS), and Institute of Ocean Sciences archives over 1980 to 2010 period. 

Methods:
Calculations, including smooth and interpolation, were carried out in sixty-five subregions and up to fifty-two vertical levels from surface to 5000m. Seasonal averages were computed as the median of yearly seasonal values. Spring months were defined as April to June, summer months were defined as July to September, fall months were defined as October to December, and winter months were defined as January to March. The data available here contain raster layers of seasonal temperature climatology for the Canadian Pacific Exclusive Economic Zone (EEZ), a subset of seasonal climatology of the Northeast Pacific Ocean, in high spatial resolution of 1/300 degree.

References:
Foreman, M. G. G., W. R. Crawford, J. Y. Cherniawsky, and J. Galbraith (2008). Dynamic ocean topography for the northeast Pacific and its continental margins, Geophys. Res. Lett., 35, L22606, doi: 10.1029/2008GL035152.

Data Sources:
NOAA, MEDS and IOS observational data

Uncertainties:
Uncertainties are introduced when quality controlled observational data are spatially interpolated to varying distances from the observation point. Climatological averages are calculated from these interpolated values.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Likelihood of Presence of Snow Crab in Area Response Planning Pilot Areas

Likelihood of presence of Snow Crab in the Bay of Fundy and Port Hawkesbury areas. The Coastal Oceanography and Ecosystem Research section (DFO Science) reviewed science sources and local knowledge sources to estimate where Snow Crab are seasonally present and delineate these areas. As of March 2017, this dataset delineates the presence of snow crab in the Bay of Fundy and Port Hawkesbury areas of Nova Scotia designated within the Area Response Planning (ARP), identified under the World Class Tanker Safety System (WCTSS) initiative, based on the Transport Canada's Response Organizations Standards.

A version of this dataset was created for the National Environmental Emergency Center (NEEC) following their data model and is available for download in the Resources section.

Cite this data as: Lazin, G., Hamer, A.,Corrigan, S., Bower, B., and Harvey, C. Data of: Likelihood of presence of Snow Crab in Area Response Planning pilot areas. Published: June 2018. Coastal Ecosystems Science Division, Fisheries and Oceans Canada, St. Andrews, N.B. https://open.canada.ca/data/en/dataset/edb15c7b-d901-46b0-a460-1aca22c013ea

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Spawning Stock Biomass Estimates of Atlantic Cod in the Southern Gulf of St. Lawrence NAFO 4T-4Vn (Nov.-Apr.)

PURPOSE:
These data have been updated following a Canadian Science Advice Secretariat (CSAS) Regional Science Advisory Process. Associated publications are available in the citation section below or will be posted on the Fisheries and Oceans Canada (DFO) Science Advisory Schedule as they become available.

Determine the stock status of southern Gulf of St. Lawrence Atlantic Cod.
            
DESCRIPTION:
The yearly spawning stock biomass estimates of southern Gulf of St. Lawrence Atlantic Cod were obtained using a Statistical Catch-at-Age model as part of the stock assessment to year 2023.

The yearly estimates presented come from Markov Chain Monte Carlo (MCMC) simulations. The yearly median estimates are provided, along with uncertainty estimates (2.5th, 25th, 75th and 97.5th percentiles). The values are in thousands of tons of spawning stock biomass.
            
USE LIMITATION:
To ensure scientific integrity and appropriate use of the data, we would encourage you to contact the data custodian.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Glass sponge grounds on the Scotian Shelf and their associated biodiversity

Emerald Basin on the Scotia Shelf off Nova Scotia, Canada, is home to a globally unique population of the glass sponge Vazella pourtalesi. Through the analysis of both in situ photographs and trawl catch data from annual multispecies bottom-trawl surveys, we examined community composition, species density, and abundance of epibenthos and fish associated with V. pourtalesi compared to locations without this sponge. Using generalized linear models and analysis of similarities, the importance of V. pourtalesi in enhancing species density and abundance of the associated epibenthic community was assessed against that of the hard substrate on which it settles. Our results indicated that the megafaunal assemblage associated with V. pourtalesi was significantly different in composition and higher in species density and abundance compared to locations without V. pourtalesi.  Analysis of similarity of trawl catch data indicated that fish communities associated with the sponge grounds are significantly different from those without V. pourtalesi, although no species were found exclusively on the sponge grounds.  Our study provides further evidence of the role played by sponge grounds in shaping community structure and biodiversity of associated deep-sea epibenthic and fish communities. The mechanism for biodiversity enhancement within the sponge grounds formed by V. pourtalesi is likely the combined effect of both the sponge itself and its attachment substrate, which together comprise the habitat of the sponge grounds.  We also discuss the role of habitat provision between the mixed-species tetractinellid sponges of the Flemish Cap and the monospecific glass sponge grounds of Emerald Basin.  
Please refer to the following citation for additional details on the data:
Hawkes N, Korabik M, Beazley L, Rapp HT, Xavier JR, Kenchington E (2019) Glass sponge grounds on the Scotian Shelf and their associated biodiversity. Mar Ecol Prog Ser 614:91-109. https://doi.org/10.3354/meps12903

Cite this data as: Hawkes, Nickolas; Korabik, Michelle; Beazley, Lindsay; Rapp, Hans Tore; Xavier, Joana; Kenchington, Ellen (2019) Glass sponge grounds on the Scotian Shelf and their associated biodiversity. Published September 2023.Ocean Ecosystems Science Division, Fisheries and Oceans Canada, Dartmouth, N.S. https://open.canada.ca/data/en/dataset/83c8e9af-ad3a-40bc-b1b7-d1ed4a069330

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Maritimes Region Atlantic Zone Monitoring Program 1991 to 2020 Hydrographic Transect Climatology

The hydrographic 1991 to 2020 climatology for the Maritimes region Atlantic Zone Monitoring Program core transects, Cabot Strait, Louisbourg, Halifax, Browns Bank, and Northeast Channel, are calculated to support annual reporting on seasonal variability. Details on data coverage for these transects and ancillary transects occupied since the inception of the program are provided. Comparisons with the previous climatology period, years 1981 to 2010, are summarized when possible.

Cite this data as: Layton, C. Data of:
Maritimes Region Atlantic Zone Monitoring Program 1991 to 2020 Hydrographic Transect Climatology.
Published: August 2025. Ocean Ecosystems Science Division, Fisheries and Oceans Canada, Dartmouth, N.S.
https://open.canada.ca/data/en/dataset/5f9c5d65-3ce1-4bdd-8b43-34086620d1e3

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Pacific Herring Spawn Index Data

Pacific Herring spawn index data for British Columbia from 1951 to present. Note that the spawn index is a relative index of spawning biomass. In addition, “NA" indicates that data are unavailable because they are either incomplete or withheld; contact the custodian for more information. For the "Region" column specifically, "NA" indicates that the location is outside stock assessment region boundaries. There are a few caveats to consider when interpreting Pacific Herring spawn index data, which are discussed in the technical report (see supporting documents).

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
National Aquatic Invasive Species (AIS) Risk Assessment for Zebra (Dreissena polymorpha) and Quagga (Dreissena rostriformis bugensis) Mussels

Zebra Mussel (Dreissena polymorpha) and Quagga Mussel (Dreissena rostriformis bugensis) have a long history of invasion in European and North American freshwater ecosystems, with significant ecological and economic impacts. An ecological risk assessment for these two invasive species for freshwater ecosystems in Canada was completed in April 2022 with the aim to provide science-based guidance to inform management decisions and actions. These include early detection, response planning, and/or regulatory and policy measures aimed at mitigating the potential spread and risk posed by Zebra and Quagga Mussels to Canadian freshwater ecosystems (DFO 2023). The Potential for Introduction (propagule pressure and connectivity), the Potential for Establishment (habitat suitability, including a Calcium-based and Maximum Entropy (MaxEnt)-based model), the Potential for Invasion, and the Ecological Impacts were used to derive Ecological Risk for Zebra and Quagga Mussels in Canada. This assessment did not evaluate the risk to individual waterbodies but rather was conducted at a 9,260 m x 9,260 m grid cell resolution. These high resolution maps are provided here. Maps of Ecological Risk at the sub-drainage level are also provided. Fisheries and Oceans Canada is not responsible for any omissions or errors that may be contained in this dataset and shall not be liable for any losses, financial or otherwise, due to the use of these data. Please credit Wilcox et al. 2024 as the source of the data in any maps, reports, or articles that are printed or published on paper or the Internet.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
A Soft-Shelled Clam (Mya arenaria) Habitat Suitability Model For The DFO Maritimes Region

The data in this layer represents habitat suitability of soft-shelled clams (Mya arenaria) in the DFO Maritimes region, and was developed using an interdepartmental approach. Substrate classification data as well as bathymetric data for the Region were used to identify potential habitat for soft-shelled clams. Substrates identified as suitable included: sand, mud, sand and mud (Greenlaw, 2022). Contours (0m and 70m) from GEBCO bathymetric data were used to isolate depths between which soft-shelled clams are present. At this stage, a polygon reflecting soft substrates from 0-70m was created as "Suitable". A "Not Suitable" layer was similarly created using the substrates: boulders, continuous bedrock, discontinuous bedrock, gravel, mixed sediment, sand and gravel.
To digitally validate the model, the Regional shoreline was divided into subsectors (developed by Environment and Climate Change Canada for the Canadian Shellfish Sanitation Program). Data from DFO (clam harvesting intensity) as well as Conservation and Protection (clam harvesting infraction locations) were used to established species presence within each sub-sector. If there had been any harvesting activity, legal or illegal, in an individual subsector, it was considered "Suitable and Validated". Merged into one final product, the model includes areas that are "Not Suitable", "Suitable", as well as "Suitable and Validated" for soft-shelled clam habitat.

Cite this data as: Harvey, C., Vincent, M., Greyson, P., Hamer, A. (2024) Data of: A Soft-Shelled Clam (Mya arenaria) Habitat Suitability Model For The DFO Maritimes Region.
Published: January 2024. Coastal Ecosystems Science Division, Fisheries and Oceans Canada, St. Andrews, N.B. https://open.canada.ca/data/en/dataset/c76f7813-d802-4b31-8ebe-476f8a7cacf2

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Species abundance in geological pockmark features in Passamaquoddy Bay, Bay of Fundy, Canada, from 2001 to 2004

Between 2001 and 2004 a descriptive and comparative investigation of the benthic macro-infauna in 17 pockmarks and 10 reference locations outside pockmarks in Passamaquoddy Bay-Bay of Fundy- was made.  This dataset contains the locations of the grab samples for each pockmark in the study area, the taxon abundance identified in each sample and the georeferenced video transect from 2004 using a towcam- an underwater, bottom referencing vehicle on which floodlights, analogue video- and digital still-camera were mounted.

For more information of the data: Wildish DJ, Akagi HM, McKeown DL, Pohle GW (2008) Pockmarks influence benthic communities in Passamaquoddy Bay, Bay of Fundy, Canada. Mar Ecol Prog Ser 357:51-66. https://www.int-res.com/abstracts/meps/v357/p51-66/

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Data of eelgrass (Zostera marina) traits from the Atlantic Coast of Nova Scotia

This dataset includes metrics of eelgrass traits related to bed structure, morphology, and physiology from field sites along the Atlantic coast of Nova Scotia, Canada.  Field sites were located across a gradient of temperature and light conditions.  Sampling was conducted in July to August, in 2017, 2021, and 2022.  Seagrass density and plants were sampled at 10 haphazardly distributed sampling stations within each seagrass bed at approximately the same depth.  Stations were ~10m apart and at least 2m from any seagrass-bare interface.  Quadrats were used to determine vegetative and reproductive shoot density.  Three plants from each sampling station were collected and processed in the laboratory for length and width leaf 3, number leaves per shoot, rhizome width, rhizome water soluble carbohydrates, and total leaf chlorophyll.  Also included in this data temperature and light metric that summarize temperature and light conditions during the summer period.

Cite this data as: Wong, M.C., Dowd, M. Data of eelgrass (Zostera marina) traits from the Atlantic Coast of Nova Scotia. Published: February 2025. Coastal Ecosystems Science Division, Maritimes Region, Fisheries and Oceans Canada, Dartmouth NS.

For additional information please see:

Wong, M.C., Dowd, M. Eelgrass (Zostera marina) Trait Variation Across Varying Temperature-Light Regimes. Estuaries and Coasts 48, 13 (2025). https://doi.org/10.1007/s12237-024-01439-3

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Coral and Sponge Concentrations in the Gulf Region of Canada

Concentrations of sea pens, small and large gorgonian corals and sponges on the east coast of Canada have been identified through spatial analysis of research vessel survey by-catch data following an approach used by the Northwest Atlantic Fisheries Organization (NAFO) in the Regulatory Area (NRA) on Flemish Cap and southeast Grand Banks. Kernel density analysis was used to identify high concentrations. These analyses were performed for each of the five biogeographic zones of eastern Canada. The largest sea pen fields were found in the Laurentian Channel as it cuts through the Gulf of St. Lawrence, while large gorgonian coral forests were found in the Eastern Arctic and on the northern Labrador continental slope. Large ball-shaped Geodia spp. sponges were located along the continental slopes north of the Grand Banks, while on the Scotian Shelf a unique population of the large barrel-shaped sponge Vazella pourtalesi was identified. The latitude and longitude marking the positions of all tows which form these and other dense aggregations are provided along with the positions of all tows which captured black coral, a non-aggregating taxon which is long-lived and vulnerable to fishing pressures.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Likelihood of Presence of Bottlenose Whales in Area Response Planning Pilot Areas

Likelihood of Presence of Bottlenose Whales in the Bay of Fundy and the Port Hawkesbury Area Response Plan. The Coastal Oceanography and Ecosystem Research section (DFO Science) reviewed reported opportunistic whale sightings and local knowledge sources to estimate areas where Northern Bottlenose Whales are seasonally present and delineate these areas.


A version of this dataset was created for the National Environmental Emergency Center (NEEC) following their data model and is available for download in the Resources section.

Cite this data as: Lazin, G., Hamer, A.,Corrigan, S., Bower, B., and Harvey, C. Data of: Likelihood of presence of Bottlenose Whale in Area Response Planning pilot areas. Published: June 2018. Coastal Ecosystems Science Division, Fisheries and Oceans Canada, St. Andrews, N.B. https://open.canada.ca/data/en/dataset/29dd835b-7c96-4c62-b558-275dfe13cbe9

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Coastal biodiversity of the benthic epifauna of the St. Lawrence Estuary (2018-2019)

The North Shore of the Lower Estuary (Upper North Shore, Quebec) is a productive coastal system where many commercial species of benthic invertebrates are fished in the infralittoral (10-20 m) and circalittoral (20-50 m) zone. However, little data exist on the biodiversity of non-commercial species and the environmental characteristics of the benthic habitat in this area. Two scientific surveys were conducted in 2018 and 2019 to address this knowledge gap by developing a framework of biodiversity and environmental (water column and seafloor) data taking that will be used to determine the baseline state of the benthic ecosystem in this region.

Surveys were conducted in 2018 (August 11-14) and 2019 (July 30-August 5) in the Upper North Shore region (between the towns of Forestville and Godbout). Surveys followed a fixed sampling design of eight transects perpendicular to bathymetry with stations at 10 m depth intervals in a bathymetry range of 10-50 m for a total of approximately 40 stations per survey. Specimens were collected with a beam trawl with an opening of 2.8 m. The hauls were made at a target speed of 2 knots and a target duration of 7 minutes. Start and end positions were recorded to calculate the distance traveled on each tow using the geosphere library of R. The average tow distance was approximately 425 m. The area covered at each tow was the product of the trawl opening and the distance traveled. 

The three files provided (DarwinCore format) are complementary and are linked by the "eventID" key. The "event_information" file includes generic event information, including date and location. The "additional_information_event_and_occurrence" file includes sample size, sampling protocol and sampling effort, among others. The "taxon_occurrence" file includes the taxonomy of the species observed, identified to the species or lowest possible taxonomic level. For abundance and biomass estimates, contact Virginie Roy (virginie.roy@dfo-mpo.gc.ca). 

For quality controls, all taxonomic names were checked against the World Register of Marine Species (WoRMS) to match recognized standards. The WoRMS match was placed in the "scientificNameID" field of the occurrence file. Special cases were noted in "identificationRemarks" and selected specimens were confirmed using field photos. Data quality checks were performed using the R obistools and worrms libraries. All sampling locations were spatially validated.

This project was funded by DFO Coastal Environmental Baseline Program under Canada’s Oceans Protection Plan. This initiative aims to acquire environmental baseline data contributing to the characterization of important coastal areas and to support evidence-based assessments and management decisions for preserving marine ecosystems.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Maritimes Spring Research Vessel Survey

The Fisheries and Oceans Canada (DFO) ecosystem surveys consist of research vessel survey data collected to monitor the distribution and abundance of fish and invertebrates throughout the Scotian Shelf, Bay of Fundy and Georges Bank. The surveys follow a stratified random sampling design, and include sampling of fish and invertebrates using a bottom otter trawl. These survey data are the primary data source for monitoring trends in species distribution, abundance, and biological condition within the region, and also provide data to the Atlantic Zonal Monitoring Program (AZMP) for monitoring hydrographic variability. Collected data includes total catch in numbers and weights by species. Length frequency data is available for most species, as are the age, sex, maturity and weight information for a subset of the individual animals. Other data such as ageing material, genetic material, and stomach contents are often also collected, but are stored elsewhere.

“Spring” cruises occur in January, February, March and April, and focus on Georges Bank (i.e. 5Z).

Cite this data as: Clark, D., Emberley, J. Data of MARITIMES SPRING RESEARCH VESSEL SURVEY. Published January 2021. Population Ecology Division, Fisheries and Oceans Canada, Dartmouth, N.S. https://open.canada.ca/data/en/dataset/fecf045a-95a2-4b69-8a40-818649a62716

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada