AndreaBozzo/ceres-open-data-index huggingface dataset:
Beluga Relative Summer Density in the St. Lawrence Estuary

This layer represents the relative summer density of belugas in the St. Lawrence Estuary based on 35 aerial surveys carried out from 1990 to 2009. The boundaries of the areas were determined by combining the highest densities until the desired proportion of the population was obtained using kernel density estimation in order to obtain a smooth and continuous density distribution.

Within Fisheries and Oceans Canada (DFO), the ecosystem approach is considered a tool for operational planning, project implementation and preparation of advisory reports. In response to this strategic direction, the DFO science division is committed to implement the ecosystem approach in its activities as Ecosystem Research Initiatives (ERI) in each of the six administrative regions of DFO. In the Quebec region, two pilot projects were implemented, of which one aimed to define and characterize the habitat of the St. Lawrence beluga (Delphinapterus leucas).

Data sources and references:

DFO. 2016. Ecosystem Research Initiative (ERI): Integrated Advice on the Summer Habitat of the St. Lawrence Estuary Beluga (Delphinapterus leucas). DFO Can. Sci. Advis. Sec. Sci. Advis. Rep. 2016/030. 

Mosnier, A., R. Larocque, M. Lebeuf, J.-F. Gosselin, S. Dubé, V. Lapointe, V. Lesage, V., H. Bourdages, D. Lefaivre, S. Senneville and C. Chion. 2016. Définition et caractérisation de l'habitat du béluga (Delphinapterus leucas) de l'estuaire du Saint-Laurent selon une approche écosystémique. Secr. can. de consult. sci. du MPO. Doc. de rech. 2016/052. vi + 93 p.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Sightings, Strandings, and Entrapment Data For Sea Turtles in Newfoundland and Labrador, Canada

The data in this dataset represent an amalgamation of sea turtle sighting, stranding, and entrapment events, mainly near Newfoundland and Labrador (NL), Canada.

This document summarises the detection events data for Leatherback (Dermochelys coriacea), Loggerhead (Caretta caretta), and Green (Chelonia mydas) Turtles that has been collected from opportunistic and systematic survey sources, plus stranding and entrapment records, in the waters of NL from 1946 to 2023. To a much lesser extent there are also detection records for the southern Gulf of St. Lawrence. Scotian Shelf, and northeastern U.S. waters.

These detection records are mostly derived from opportunistic reports, so there are rarely data for a report that includes measures of the observer effort expended to make the detection, and rarely associated imagery. During DFO aerial surveys there are measures of effort in most cases, enabling the turtle sightings reports to be used in habitat modelling (e.g., Mosnier et al. 2018).
Most of the information variables (such as “Date”, “Latitude”, “Longitude”, “Number of Animals”) have been obtained from the detection report. In some cases data for variables such as “Location Reliability”, “ID Reliability”, “Platform”, and “Strand or Entrapment Outcome” were derived from interpretation of the comments associated with the report, if available. For description of the variables in the dataset see the Data Dictionary.


References:
Mosnier, A., Gosselin, J.-F., Lawson, J., Plourde, S., and Lesage, V. 2018. Predicting seasonal occurrence of leatherback turtles (Dermochelys coriacea) in eastern Canadian waters from turtle and sunfish (Mola mola) sighting data and habitat characteristics. Can. J. Zool. 97: 464-478. https://doi.org/10.1139/cjz-2018-0167

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Phytoplankton counts at the Atlantic Zone Monitoring Program (AZMP)-Quebec’s stations.

Phytoplankton counts (cell/L)) at the 3 fixed stations and some of the 46 stations grouped into Atlantic Zone Monitoring Program (AZMP) transects under Quebec region responsibility.

Phytoplankton data counts at AZMP stations in June 2014, 2018 and 2019 are displayed as 5 layers: Diatoms, Dinoflagellates, Flagellates, Protozoans and Total Phytoplankton. Another layer displays the fixed stations Rimouski, Anticosti Gyre and Gaspe Current and the attached files contain the phytoplankton data acquired at those stations: a .png file for each one, showing time series of counts for the 5 groups, and a .csv file containing the data themselves (columns : Latitude,Longitude, Date(UTC), Depth_min/Profondeur_min(m), Depth_max/Profondeur_max(m), Diatoms/Diatomées(cells/L), Dinoflagellates/Dinoflagellés(cells/L), Flagellates/Flagellés(cells/L), Protozoans/Protozoaires(cells/L), Phytoplankton/Phytoplancton(cells/L)).

Purpose

The Atlantic Zone Monitoring Program (AZMP) was implemented in 1998 with the aim of increasing the Department of Fisheries and Oceans Canada’s (DFO) capacity to detect, track and predict changes in the state and productivity of the marine environment.

The AZMP collects data from a network of stations composed of high-frequency monitoring sites and cross-shelf sections in each following DFO region: Québec, Gulf, Maritimes and Newfoundland. The sampling design provides basic information on the natural variability in physical, chemical, and biological properties of the Northwest Atlantic continental shelf. Cross-shelf sections sampling provides detailed geographic information but is limited in a seasonal coverage while critically placed high-frequency monitoring sites complement the geography-based sampling by providing more detailed information on temporal changes in ecosystem properties.

In Quebec region, two surveys (46 stations grouped into transects) are conducted every year, one in June and the other in autumn in the Estuary and Gulf of St. Lawrence. Historically, 3 fixed stations were sampled more frequently. One of these is the Rimouski station that still takes part of the program and is sampled about weekly throughout the summer and occasionally in the winter period.

Annual reports (physical, biological and a Zonal Scientific Advice) are available from the Canadian Science Advisory Secretariat (CSAS), (http://www.dfo-mpo.gc.ca/csas-sccs/index-eng.htm).

Devine, L., Scarratt, M., Plourde, S., Galbraith, P.S., Michaud, S., and Lehoux, C. 2017. Chemical and Biological Oceanographic Conditions in the Estuary and Gulf of St. Lawrence during 2015. DFO Can. Sci. Advis. Sec. Res. Doc. 2017/034. v + 48 pp.


Supplemental Information

Phytoplankton samples are collected using Niskin bottles, preserved with acid Lugol solution and analysed according to AZMP sampling protocol:

Mitchell, M. R., Harrison, G., Pauley, K., Gagné, A., Maillet, G., and Strain, P. 2002. Atlantic Zonal Monitoring Program sampling protocol. Can. Tech. Rep. Hydrogr. Ocean Sci. 223: iv + 23 pp.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Potential haul-out sites for the harbor seal and gray seal in the Estuary and Gulf of St. Lawrence

Layer that includes the known information on potential haul-out sites for the harbour seal and gray seal in the Estuary and Gulf of St. Lawrence according to a literature review of documents produced between 1978 and 2000.

Additional Information

Potential haul-out sites for the harbor seal and gray seal were produced according to a literature review of the following documents:

Andersen, A. et M. Gagnon. 1980. Les ressources halieutiques de l'estuaire du Saint-Laurent. Rapp. can. ind. sci. halieut. aquat., 119: iv + 56 p.

Argus Groupe-Conseil inc. 1992. Synthèse et analyse des connaissances relatives aux ressources naturelles du Saguenay et de l'estuaire maritime du Saint-Laurent. Parc marin du Saguenay. Service canadien des parcs, région du Québec.

Biorex. 1995. Cartographie des ressources halieutiques et de leurs habitats dans l'estuaire moyen du Saint-Laurent. Rapport au ministère des Pêches et des Océans, Région du Québec, Division de la gestion de l'habitat du poisson. 36 p. + annexes. 

Biorex. 1996. Base de données géoréférencées sur les ressources halieutiques et leurs habitats : estuaire maritime du Saint-Laurent et fjord du Saguenay. Rapport au ministère des Pêches et des Océans, Région du Québec, Division de la gestion de l'habitat du poisson. Volume 1 : 38 p. + annexes et Volume 2 : 34 p. + annexes.

Chevrier, V. 1994. Cartographie des habitats du poisson aux Îles-de-la-Madeleine. Rapport technique no. 1. Réalisé en collaboration avec le M.P.O., Attention Frag'Îles et la M.R.C. des Îles-de-la-Madeleine. 24 p. + 1 ann. + 36 cartes.

Comité de la zone d'intervention prioritaire (ZIP) de la Côte-Nord du golfe. 1999. Inventaire des habitats côtiers et marins sensibles de la Basse-Cote-Nord : Rapport final, présenté à Pêches et Océans Canada par le Comité ZIP Côte-Nord du Golfe. 126 p.

Comité de protection de la santé et de l'environnement de Gaspé inc. (C.P.S.E.G.). 1996.

Communication personnelle par Carol Fournier, MPO. 1999. 

Communications personnelles par Gosselin, J-F-. 1996. 

Desaulniers, J. 1989. Étude des populations de pinnipèdes de l'Archipel-de-Mingan et relation entre l'activité de chasse au phoque et la sécurité publique 1987 à 1989. Parcs Canada. Région du Québec. Service de la conservation des ressources naturelles.

Enquêtes auprès des pêcheurs. 1995.

Lavigne, P.-J. 1978. La chasse estivale du phoque dans le Saint-Laurent. Rapport non publié. 65 p. Pêches et Océans Canada, Région du Québec.

Lesage, Véronique.  2000. Communication personnel.

Lesage, V., M. O. Hammill, and K.M. Kovacs.  1995. Harbour seal (Phoca vitulina) and Grey seal (Halichoerus grypus) abundance in the St. Lawrence estuary. Can. Manuscr. Rep. Fish. Aquat. Sci. 2307: iii + 19 p.

Naturam Environnement inc. 1996. Caractérisation physique et biologique de l'habitat du poisson du secteur de Pointe-aux-Outardes. Realisé pour le compte de la Corporation du Parc régional de Pointe-aux-Outardes. 196 p.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Martimes Summer Research Vessel Survey

“Summer” missions occur in June, July and August and these focus on the Scotian Shelf and Bay of Fundy (i.e. 4VWX 5Yb, expanding recently to include the Laurentian Channel and Georges Bank (5Zc).   Collected data includes total catch in numbers and weights by species. Length frequency data is available for most species, as are the age, sex, maturity and weight information for a subset of the individual animals. Other data such as ageing material, genetic material, and stomach contents are often also collected, but are stored elsewhere.

“Summer” cruises occur in May, June, July and August and these focus on the Scotian Shelf and Bay of Fundy (i.e. 4VWX).

Cite this data as: Clark, D., Emberley, J. Data of MARITIMES SUMMER RESEARCH VESSEL SURVEYS. Published January 2021. Population Ecology Division, Fisheries and Oceans Canada, Dartmouth, N.S. https://open.canada.ca/data/en/dataset/1366e1f1-e2c8-4905-89ae-e10f1be0a164

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Fish Habitat Assessment Output from Bay of Quinte Suitability Modelling: High Water Level (75.4m ASL) - Juvenile/Adult Habitat - Low Vegetation Association Species (Coolwater Guild)

Fish Habitat Assessment Output: 7 of 16

High Water Level (75.4m ASL) - Juvenile/Adult Habitat - Low Vegetation Association Species (Coolwater Guild)

Habitat suitability was assessed for the Bay of Quinte Area of Concern, at a 3 m grid resolution, using the Habitat Ecosystem Assessment Tool (HEAT), temperature algorithms, vegetation models, and water level input. Habitat classifications were based on three variables: depth (elevation), vegetation, and substrate; and modified by temperature suitabilities. The final suitability maps were based on documented habitat and temperature associations for the fish in the area. Different life stages (spawning requirements, nursery habitat, adult habitat) were modeled for the years of 1972-2011. Suitability values were scaled from 0 (not suitable) to 1 (highly suitable) and converted to suitability classes of very low, low, medium, and high. The final maps for each guild – life stage combination are maximum suitability values from the 39-year period modelled.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Coastal Environmental Baseline Program (Newfoundland Region), Placentia Bay Nearshore Fish Community Sampling

This project was completed by the Coastal Environmental Baseline Program (Coastal and Freshwater Ecology Section) in the Newfoundland and Labrador Science Branch of Fisheries and Oceans Canada (DFO). The nearshore fish and invertebrate community was sampled annually in Placentia Bay at 14 sites for 5 years (2018 – 2022). The objective of this program was to collect data on juvenile fish (specifically Atlantic cod) communities and habitats within Placentia Bay. The sites and timing (October) were selected based on historical sampling. There were several data types collected during each of these sampling trips. Boat-based beach seining was used to collect data on fish and invertebrate diversity, abundance, distribution, and size. Visual transects were used to identify vegetation and substrate (habitat) types and proportions at seine sites. CTD profiles (temperature, conductivity, depth, and salinity) were obtained using a castaway CTD. Finally, eDNA samples were collected at each site (2018-2021) to obtain complementary information on the presence of juvenile fish and other species present. This record contains the geographic locations of the 14 sites, and information on the timing and type of data collected at each site.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Seasonal nitrate climatology of the Canadian Pacific Exclusive Economic Zone from BCCM model (1993-2020)

Description:
Seasonal mean nitrate concentration from the British Columbia continental margin model (BCCM) were averaged over the 1993 to 2020 period to create seasonal mean climatology of the Canadian Pacific Exclusive Economic Zone.

Methods:
Nitrate concentrations at up to forty-six linearly interpolated vertical levels from surface to 2400 m and at the sea bottom are included. Spring months were defined as April to June, summer months were defined as July to September, fall months were defined as October to December, and winter months were defined as January to March. The data available here contain raster layers of seasonal nitrate concentration climatology for the Canadian Pacific Exclusive Economic Zone at 3 km spatial resolution and 47 vertical levels.

Uncertainties:
Model results have been extensively evaluated against observations (e.g. altimetry, CTD and nutrient profiles, observed geostrophic currents), which showed the model can reproduce with reasonable accuracy the main oceanographic features of the region including salient features of the seasonal cycle and the vertical and cross-shore gradient of water properties. However, the model resolution is too coarse to allow for an adequate representation of inlets, nearshore areas, and the Strait of Georgia.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Seasonal Zooplankton Climatologies of the British Columbia Exclusive Economic Zone (1990-2019)

Description:
Seasonal climatologies for Zooplankton biomass in seven size categories were calculated for the period 1990-2019.  The data used were a subset of the Fisheries and Oceans Canada, Institute of Ocean Sciences Zooplankton Database. This dataset is incomplete and is regularly updated as analysis takes place. 

Methods:
Data-Interpolating Variational Analysis (DIVA) was used for spatial. Seasonal averages were computed as the mean of yearly seasonal means. Spring months were defined as April to June, summer months were defined as July to September, fall months were defined as October to December, and winter months were defined as January to March. The data available here contain raster layers of seasonal Zooplankton climatology for the Canadian Pacific Exclusive Economic Zone (EEZ), with high spatial resolution of 1/300 degree.

Uncertainties:
Uncertainties are introduced when observational data are spatially interpolated to varying distances from the observation point. Climatological averages are calculated from these interpolated values. Caution should be used for data in inlets and nearshore as the interpolation does not perform well in these areas, data in some inlets have been masked.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Pelagic Shark Satellite Tag data - Blue Shark

The blue shark (Prionace glauca),  is a species found in Atlantic Canadian waters which is commonly encountered in commercial and recreational fisheries. Pop-up Satellite Archival Tags (PSAT) and Smart Position and Temperature tag (SPOT) from Wildlife Computers were applied to blue sharks from 2004 to 2008 to collect data on depth (pressure), temperature and ambient light level (for position estimation). Deployments were conducted in Canada on commercial and recreational vessels from mid-August to early October, but mostly in September. A variety of tag models were deployed: PAT 4 (n=16), Mk10 (N=28), and SPOT3 (N=2) and 39 of 46 tags reported. The blue sharks tagged ranged in size from 124 cm to 251 cm Fork Length (curved); 30 were female, 15 were male and 1 was unknown sex. Time at liberty ranged from 4 – 210 days and 16 tags remained on for the programmed duration. Raw data transmitted from the PSAT’s after release was processed through Wildlife Computers software (GPE3) to get summary files, assuming a maximum swimming speed of 2m/s, NOAA OI SST V2 High Resolution data set for SST reference and ETOPO1-Bedrock dataset for bathymetry reference. The maximum likelihood position estimates are available in .csv and .kmz format and depth and temperature profiles are also in .csv format. Other tag outputs as well as metadata from the deployments can be obtained upon request from: warren.joyce@dfo-mpo.gc.ca or heather.bowlby@dfo-mpo.gc.ca.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Ocean Station "Papa" Detailed Zooplankton Data: 1956-1980

Zooplankton samples were collected at Ocean Station "P" (50.0000, -145.0000) from 1956 to 1980, and were analyzed to various levels of taxonomic resolution over the years. Although summaries of these data have been previously published ((LeBrasseur 1965) and (Fulton 1978, 1983)) the detailed species data have never been published. This detailed dataset contains total zooplankton wet weights/m3 for the whole period of 1956 to 1980, as well as densities (numbers/m3) for five major taxa (copepods, chaetognaths, euphausiids, amphipods, and Aglantha) from 1964 to 1967, species identifications, counts and lengths for many samples collected between 1968 to 1980. 

The attached supporting document (Ocean Station "Papa" detailed zooplankton data: 1956 – 1980) contains information on the methods used to collect and process the data along with descriptions of a number of fairly minor points about the data that were not resolved. It also describes, in detail, the format of the original data files, the corrections/changes that were made to these files in creating this version, and how these errors affect what was published in Fulton (1983).

The purpose of this record is to make the detailed data available to the scientific community in an electronic format and to provide a convenient reference for citing the detailed data. 


Waddell, Brenda J., and Skip McKinnell. 1995. Ocean Station "Papa" detailed zooplankton data:
1956 - 1980. Can. Tech. Rep. Fish. Aquat. Sci. 2056: 21 p.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Bottom salinity at the Atlantic Zone Monitoring Program (AZMP)-Quebec’s stations.

Bottom salinity time series at the 3 fixed stations and 46 stations, grouped into transects, of the Atlantic Zonal Monitoring Program (AZMP) under the Quebec region responsibility.

The mean bottom salinity of the last ten years are displayed as 2 layers, one for the June survey (2014-2023, 2020 not sampled), another for the autumn survey (2014-2023).  A third layer shows the positions of the fixed stations of the program (Anticosti Gyre, Gaspé Current and Rimouski).

Each station is linked with a .png file showing the bottom salinity time series and with a .csv file containing all the bottom salinity data acquired at those stations since the beginning of the program sampling (columns : Station, Latitude, Longitude, Date(UTC), Sounding(m), Depth/Profondeur(m), Salinity/Salinité).

Purpose

The Atlantic Zone Monitoring Program (AZMP) was implemented in 1998 with the aim of increasing the Department of Fisheries and Oceans Canada’s (DFO) capacity to detect, track and predict changes in the state and productivity of the marine environment.

The AZMP collects data from a network of stations composed of high-frequency monitoring sites and cross-shelf sections in each following DFO region: Québec, Gulf, Maritimes and Newfoundland. The sampling design provides basic information on the natural variability in physical, chemical, and biological properties of the Northwest Atlantic continental shelf. Cross-shelf sections sampling provides detailed geographic information but is limited in a seasonal coverage while critically placed high-frequency monitoring sites complement the geography-based sampling by providing more detailed information on temporal changes in ecosystem properties.

In Quebec region, two surveys (46 stations grouped into transects) are conducted every year, one in June and the other in autumn in the Estuary and Gulf of St. Lawrence. Historically, 3 fixed stations were sampled more frequently. One of these is the Rimouski station that still takes part of the program and is sampled about weekly throughout the summer and occasionally in the winter period.

Annual reports (physical, biological and a Zonal Scientific Advice) are available from the Canadian Science Advisory Secretariat (CSAS), (http://www.dfo-mpo.gc.ca/csas-sccs/index-eng.htm).

Devine, L., Scarratt, M., Plourde, S., Galbraith, P.S., Michaud, S., and Lehoux, C. 2017. Chemical and Biological Oceanographic Conditions in the Estuary and Gulf of St. Lawrence during 2015. DFO Can. Sci. Advis. Sec. Res. Doc. 2017/034. v + 48 pp.


Supplemental Information

The bottom salinity is determined from CTD profile in the water column according to AZMP sampling protocol:

Mitchell, M. R., Harrison, G., Pauley, K., Gagné, A., Maillet, G., and Strain, P. 2002. Atlantic Zonal Monitoring Program sampling protocol. Can. Tech. Rep. Hydrogr. Ocean Sci. 223: iv + 23 pp.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada
Commercial catches sampling program in the Estuary and Gulf of St. Lawrence – Iceland scallop (Chlamys islandica)

Summary
The Quebec region of the Department of Fisheries and Oceans (DFO) is responsible for the assessment of several fish and invertebrate stocks exploited in the Estuary and the northern Gulf of St. Lawrence. The commercial catches sampling program is one of the sources of information used to complete these assessments. The data collected by this program, at wharf or at sea, offers among other things the advantage of a relatively large spatio-temporal coverage and provides some of the necessary knowledge to assess the demography and the structure of the exploited populations. This program is implemented by specialized DFO staff whose main mandate is to collect biological data on groundfish, pelagic fish and marine invertebrate species that are commercially exploited in the various marine communities.

Data
This dataset on the iceland scallop (Chlamys islandica) includes the metadata, shell height and the number shells (empty or full) for all the specimens measured. This dataset covers the periods of 1985-2009 and 2011 to present. In order to protect the confidentiality of the sources, some informations (such as those concerning the vessel) have been excluded and others (such as the date of capture) have been simplified. Entries where there was only one vessel in a fishing area for a given year were also excluded. Further information including the fishing areas coordinates can be found by clicking on the «Atlantic and Arctic commercial fisheries» and «Fishing areas» links below.

Organization: Fisheries and Oceans Canada | Pêches et Océans Canada