AndreaBozzo/ceres-open-data-index huggingface dataset:
Micro litter - Density per net normalized per m³ - Research and monitoring protocols 2016/2023 v2025

This visualization product displays the density of floating micro-litter per net normalized per m³ per year from research and monitoring protocols.
EMODnet Chemistry included the collection of marine litter in its 3rd phase. Before 2021, there was no coordinated effort at the regional or European scale for micro-litter. Given this situation, EMODnet Chemistry proposed to adopt the data gathering and data management approach as generally applied for marine data, i.e., populating metadata and data in the CDI Data Discovery and Access service using dedicated SeaDataNet data transport formats. EMODnet Chemistry is currently the official EU collector of micro-litter data from Marine Strategy Framework Directive (MSFD) National Monitoring activities (descriptor 10).
A series of specific standard vocabularies or standard terms related to micro-litter have been added to SeaDataNet NVS (NERC Vocabulary Server) Common Vocabularies to describe the micro-litter.
European micro-litter data are collected by the National Oceanographic Data Centres (NODCs). Micro-litter map products are generated from NODCs data after a test of the aggregated collection including data and data format checks and data harmonization.

A filter is applied to represent only micro-litter sampled according to research and monitoring protocols as MSFD monitoring.

Densities were calculated for each net using the following calculation:
Density (number of particles per m³) = Micro-litter count / Sampling effort (m³) 
When the number of micro-litters was not filled, it was not possible to calculate the density.

Percentiles 50, 75, 95 & 99 have been calculated taking into account data for all years.

Warning: the absence of data on the map does not necessarily mean that they do not exist, but that no information has been entered in the National Oceanographic Data Centre (NODC) for this area.
European beach litter standardized, harmonized and validated datasets 2001/2020 v2021

EMODnet Chemistry aims to provide access to marine chemistry data sets and derived data products concerning eutrophication, ocean acidification, contaminants and litter. The chosen parameters are relevant for  the Marine Strategy Framework Directive (MSFD), in particular for descriptors 5, 8, 9 and 10. The dataset contains standardized, harmonized and validated data collections from beach litter (monitoring and other sources). 
Datasets concerning beach and seafloor litter data are loaded in a central database after a semi-automated validation phase. Once loaded, a data assessment is performed in order to check data consistency and potential errors are corrected thanks to a feedback loop with data originators.
For beach litter, the harmonized datasets contain all unrestricted or SeaDataNet License EMODnet Chemistry data on beach litter data, including 12390 CDI records, in which 11152 refer to monitoring data, 1208 to data from cleaning surveys and 29 to data from research. A relevant part of the monitoring data has been considered for assessment purposes by the European institutions and therefore is tagged as MSFD_monitoring. The temporal range for monitoring data is from 2001-01-01 to 2020-08-26 and includes data from 582 beaches. For data from cleaning, the temporal range is from 2013-03-12 to 2020-04-22 and includes data from 831 beaches. For data from research, the temporal range is from 2014-04-07 to 2016-10-12 and includes data from 21 beaches. EMODnet beach litter data and databases are hosted and maintained by 'Istituto Nazionale di Oceanografia e di Geofisica Sperimentale, Division of Oceanography (OGS/NODC)' from Italy.
Data are formatted following Guidelines and forms for gathering marine litter data, which can be found at: https://doi.org/10.6092/15c0d34c-a01a-4091-91ac-7c4f561ab508. The updated vocabularies of admitted values are available in https://nodc.ogs.it/marinelitter/vocab.
The harmonized datasets can be downloaded as EMODnet Beach litter data format  Version 1.0, which is a spreadsheet file composed of 4 sheets: beach metadata, survey metadata, animals and litter. 
The original datasets can be searched and downloaded from EMODnet Chemistry Chemistry CDI Data and Discovery Access Service: https://emodnet-chemistry.maris.nl/search
Demersal species from the MEDITS (Mediterranean International Trawl Survey) project in the Croatian territorial waters

Data were collected during annual bottom trawl surveys carried out in the eastern part of the Adriatic Sea. Data about qualitative and quantitative composition of demersal species, abundance and biomass are collected. Data were uploaded on official DCF database.
Data have been collected within EU-Data collection framework (EU-DCF) as related to International Mediterranean bottom trawl surveys (Acronim: MEDITS); possible use of data collected within EU-DCF, as submitted to Joint Research Center (JRC) database, is regulated by Council Regulation (EC) No. 199/2008. Sampling protocol followed is available on http://www.sibm.it/MEDITS%202011/docs/Medits_Handbook_2016_version_8_042016.pdf
EMODnet Digital Bathymetry (DTM 2016) - Tile C1

The "EMODnet Digital Bathymetry (DTM) - 2016" is a multilayer bathymetric product for Europe’s sea basins covering::
• the Greater North Sea, including the Kattegat and stretches of water such as Fair Isle, Cromarty, Forth, Forties, Dover, Wight, and Portland
• the English Channel and Celtic Seas
• Western and Central Mediterranean Sea and Ionian Sea
• Bay of Biscay, Iberian coast and North-East Atlantic
• Adriatic Sea
• Aegean - Levantine Sea (Eastern Mediterranean)
• Azores - Madeira EEZ
• Canary Islands
• Baltic Sea
• Black Sea
• Norwegian – Icelandic seas

The DTM is based upon more than 7700 bathymetric survey data sets and Composite DTMs that have been gathered from 27 data providers from 18 European countries and involving 169 data originators. The gathered survey data sets can be discovered and requested for access through the Common Data Index (CDI) data discovery and access service that also contains additional European survey data sets for global waters. This discovery service makes use of SeaDataNet standards and services and have been integrated in the EMODnet portal (https://emodnet.ec.europa.eu/en/bathymetry#bathymetry-services ). The Composite DTMs are described using the Sextant Catalogue Service that makes also use of SeaDataNet standards and services. Their metadata can retrieved through interrogating the Source Reference map in the Central Map Viewing service (https://emodnet.ec.europa.eu/geoviewer/ ). 
In addition, the EMODnet Map Viewer gives users wide functionality for viewing and downloading the EMODnet digital bathymetry such as:
• water depth (refering to the Lowest Astronomical Tide Datum - LAT) in gridded form 
on a DTM grid of 1/8 * 1/8 arc minute of longitude and latitude (ca 230 * 230 meters)
• option to view depth parameters of individual DTM cells and references to source data
• option to download DTM in 16 tiles in different formats: EMO, EMO (without GEBCO data), ESRI ASCII, ESRI ASCII Mean Sea Level, XYZ, NetCDF (CF), RGB GeoTiff and SD
• layer with a number of high resolution DTMs for coastal regions
• layer with wrecks from the UKHO Wrecks database.
The NetCDF (CF) DTM files are fit for use in a special 3D Viewer software package which is based on the existing open source NASA World Wind JSK application. It has been developed in the frame of the EU FP7 Geo-Seas project (another sibling of SeaDataNet for marine geological and geophysical data) and is freely available. The 3D viewer also supports the ingestion of WMS overlay maps. The SD files can also be used for 3D viewing by means of the freely available iView4De(Fledermaus) software.

The original datasets themselves are not distributed but described in the metadata services, giving clear information about the background survey data used for the DTM, their access restrictions, originators and distributors and facilitating requests by users to originator.
EMODnet Digital Bathymetry (DTM 2022) - Tile A2

The "EMODnet Digital Bathymetry (DTM)- 2022" is a multilayer bathymetric product for Europe’s sea basins covering:
•  the Greater North Sea, including the Kattegat and stretches of water such as Fair Isle, Cromarty, Forth, Forties,Dover, Wight, and Portland 
•  the English Channel and Celtic Seas  
•  Western Mediterranean, the Ionian Sea and the Central Mediterranean Sea 
•  Iberian Coast and Bay of Biscay (Atlantic Ocean) 
•  Adriatic Sea (Mediterranean) 
•  Aegean - Levantine Sea (Mediterranean). 
•  Madeira and Azores (Macaronesia) 
•  Baltic Sea 
•  Black Sea 
•  Norwegian and Icelandic Seas 
•  Canary Islands (Macaronesia) 
•  Arctic region and Barentz Sea

The DTM is based upon 21937 bathymetric survey data sets and Composite DTMs that have been gathered from 64 data providers from 28 countries riparian to European seas and beyond. Also Satellite Derived Bathymetry data products have been included fro Landsat 8 and Sentinel satellite images. Areas not covered by observations are completed by integrating GEBCO 2022 and IBCAO V4.

The source reference layer in the portal viewing service gives metadata of the data sets used with their data providers; the metadata also acknowledges the data originators. The incorporated survey data sets itself can be discovered and requested for access through the Common Data Index (CDI) data discovery and access service that in December 2022 contained > 41.000survey data sets from European data providers for global waters. The Composite DTMs can be discovered through the Sextant Catalogue service. Both discovery services make use of SeaDataNet standards and services and have been integrated in the EMODnet portal (https://emodnet.ec.europa.eu/en/bathymetry#bathymetry-services ).
In addition, the EMODnet Map Viewer (https://emodnet.ec.europa.eu/geoviewer/ ) gives users wide functionality for viewing and downloading the EMODnet digital bathymetry such as:
• water depth (refering to the Lowest Astronomical Tide Datum - LAT) in gridded form on a DTM grid of 1/16 * 1/16 arc minute of longitude and latitude (ca 115 * 115 meters).
• option to view depth parameters of individual DTM cells and references to source data
• option to download DTM in 58 tiles in different formats: ESRI ASCII, XYZ, EMODnet CSV, NetCDF (CF), GeoTiff and SD
• option to visualize the DTM in 3D in the browser without plug-in
• layer with a number of high resolution DTMs for coastal regions
• layer with wrecks from the UKHO Wrecks database.

The EMODnet DTM is also available by means of OGC web services (WMS, WFS, WCS, WMTS), which are specified at the EMODnet Bathymetry portal.  
The original datasets themselves are not distributed but described in the metadata services, giving clear information about the background survey data used for the DTM, their access restrictions, originators and distributors and facilitating requests by users to originator.
Mapping of areas affected by mass-flow deposits at the present-day seafloor of the Alboran sea (SW Mediterranean)

For the mapping of mass-flow deposits a database with over 1500 km of 2D multi- and single-channel seismic lines, with different degrees of resolution (from a few metres to metric) together with high-resolution multi-beam bathymetry has been analysed and interpreted. Multi-channel seismic records were downloaded from the Archivo Técnico de Hidrocarburos (https:// geoportal.minetur.gob.es/ATHv2/welcome.do). Single-channel records were mostly obtained with airgun systems (140 to 530 c.i.) and are included in the database from the Instituto de Ciencias del Mar, ICM-CSIC, http://www.icm.csic.es/geo/gma/SurveyMaps. Several multi-beam bathymetry datasets obtained with Simrad
EM12 and Atlas HYDROSWEEP DS multibeam echosounders were also
compiled and integrated for the present study from the ALBA,
MARSIBAL, CONTOURIBER and SARAS projects and the Fishing General
Secretary (Spanish Government). These data are gridded to a resolution
of 50 m
Mooring data at Yermak pass from September 2017 to July 2020

The mooring was deployed on 15 September 2017 from Norwegian Research Vessel Lance at 80.6°N and 7.26°E (depth of 730 m) in the Yermak Pass over the Yermak Plateau north of Svalbard. It comprised 3 instruments: an upward-looking RDI 75kHz, a Long Ranger Acoustic Doppler Current Profiler (ADCP) at 340 m with 16 m vertical resolution (25 bins of 16 m each) and a 2-hour sampling time; a Seabird SBE37 measuring temperature, salinity and pressure at 348 m with 10-minute sampling time; and an Aquadopp current meter at 645 m with a 2-hour sampling time. The mooring was retrieved on the 19 July 2020 by Norwegian Icebreaker K.V. Svalbard. The present dataset features: (i) the ADCP 50-hour smoothed daily velocities, conservative temperature and pressure time series interpolated every 10 meters within the 20-330m layer, (ii) the Aquadopp 50-hour smoothed daily velocities and pressure time series at 645 m; and (iii) the SBE37 50-hour smoothed daily conservative temperature, absolute salinity and pressure time series at 348 m.
Important Note: This submission has been initially submitted to SEA
scieNtific Open data Edition (SEANOE) publication service and received the recorded DOI.
The metadata elements have been further processed (refined) in EMODnet
Ingestion Service in order to conform with the Data Submission Service
specifications.
Arctic Ocean - DIVA 4D 6-year analysis of Water body dissolved oxygen concentration 1965/2017 v2021

Moving 6-year analysis of Water body dissolved oxygen concentration in the Arctic Ocean, for each season in the period 1965-2017. Every year of the time dimension corresponds to the 6-year centered average for each season. Winter: December-February, Spring: March-May, Summer: June-August, Autumn: September-November. Depth range (IODE standard depths): 0, 5, 10, 20, 30, 40, 50, 75, 100, 125, 150, 200, 250, 300, 400, ..., 1500, 1750, 2000, 2500m. Units: umol/l. Description of DIVA analysis: The computation was done with the DIVAnd (Data-Interpolating Variational Analysis in n dimensions), version 2.6.6, using GEBCO 30sec topography for the spatial connectivity of water masses. The horizontal resolution of the produced DIVAnd maps grids is 0.1 degrees. Signal-to-noise ratio was fixed to 2.0, horizontal correlation length to 100 km, and vertical correlation length varying between 25 and 200 m. Logarithmic transformation is applied to the data prior to the analysis. Background field: the data mean value is subtracted from the data.
Baltic Sea - DIVAnd 6-year seasonal analysis of Water body chlorophyll-a 1974/2021 v2023

Running 6-year analysis of Water body chlorophyll-a in the Baltic Sea. 
    Four seasons (March-May, June-August, September-November, December-February). 
    Every year of the time dimension corresponds to a 6-year centred average. 
    Periods span between 1974-2021. 
    Analyses for depths (m) (HELCOM standard depths): 0, 5, 10, 15, 20, 30.
    
    Data Sources: observational data from SeaDataNet/EMODnet Chemistry Data Network. 
    Description of DIVA analysis: Geostatistical data analysis by DIVAnd (Data-Interpolating Variational Analysis in n dimensions) tool. 
    GEBCO_08 Grid (30 arc-seconds) topography is used for the contouring preparation. 
    Files contain analysed fields, error fields and combined field with the deepest value for each grid point selected. 
    Also pre-masked fields using relative error threshold 0.3 and 0.5 are included. 
    In the analyses the horizontal correlation length is fixed to 80 km and decreasing towards the coastline, 
    the vertical correlation length is varying with depth.
    Signal to noise ratio is fixed to 1.0. 
    Background fields were created using data for the given time period and season. 
    Log transformation was used in the analyses. No detrending, advection constraints or weighting are applied. 
    Unit is mg/m3.
North East Atlantic Ocean - Contaminants aggregated datasets 1966/2022 v2023

EMODnet Chemistry aims to provide access to marine chemistry datasets and derived data products concerning eutrophication, acidity and contaminants. The importance of the selected substances and other parameters relates to the Marine Strategy Framework Directive (MSFD). This aggregated dataset contains all unrestricted EMODnet Chemistry data on potential hazardous substances, despite the fact that some data might not be related to pollution (e.g. collected by deep corer). Temperature, salinity and additional parameters are included when available. It covers the Northeast Atlantic Ocean (40W). Data were harmonised and validated by the '‘IFREMER / IDM / SISMER - Scientific Information Systems for the SEA’ in France.
The dataset contains water (profiles), sediment (profiles and timeseries) and biota (timeseries). The temporal coverage is 1974–2018 for water measurements, 1966–2020 for sediment measurements and 1979–2022 for biota measurements.
Regional datasets concerning contaminants are automatically harvested and the resulting collections are harmonised and validated using ODV Software and following a common methodology for all sea regions ( https://doi.org/10.6092/8b52e8d7-dc92-4305-9337-7634a5cae3f4). Parameter names are based on P01 vocabulary, which relates to BODC Parameter Usage Vocabulary and is available at: https://vocab.nerc.ac.uk/search_nvs/P01/.
The harmonised dataset can be downloaded as as an ODV spreadsheet, which is composed of a metadata header followed by tab separated values. This spreadsheet can be imported into ODV Software for visualisation (more information can be found at: https://www.seadatanet.org/Software/ODV). In addition, the same dataset is offered also as a txt file in a long/vertical format, in which each P01 measurement is a record line. Additionally, there are a series of columns that split P01 terms into subcomponents (substance, CAS number, matrix...).This transposed format is more adapted to worksheet applications (e.g. LibreOffice Calc).
Contaminants-Lead: water stations v2019

This product displays the stations present in EMODnet validated dataset where lead levels have been measured in water.
EMODnet Chemistry has included the gathering of contaminants data since the beginning of the project in 2009. 
For the maps for EMODnet Chemistry Phase III, it was requested to plot data per matrix (water,sediment, biota), per biological entity and per chemical substance. 
The series of relevant map products have been developed according to the criteria D8C1 of the MSFD Directive, specifically focusing on the requirements under the new Commission Decision 2017/848 (17th May 2017). The Commission Decision points to relevant threshold values that are specified in the WFD, as well as relating how these contaminants should be expressed (units and matrix etc.) through the related Directives i.e. Priority substances for Water. EU EQS Directive does not fix any threshold values in sediments. On the contrary Regional Sea Conventions provide some of them, and these values have been taken into account for the development of the visualization products.
To produce the maps the following process has been followed:
    1. Data collection through SeaDataNet standards (CDI+ODV)
    2. Harvesting, harmonization, validation and P01 code decomposition of data
    3. SQL query on data sets from point 2 
    4. Production of map with each point representing at least one record that match the criteria
The harmonization of all the data has been the most challenging task considering the heterogeneity of the data sources, sampling protocols.
Preliminary processing were necessary to harmonize all the data :
    • For water: contaminants in the dissolved phase;
    • For sediment: data on total sediment (regardless of size class) or size class < 2000 μm
    • For biota: contaminant data will focus on molluscs, on fish (only in the muscle), and on crustaceans
    • Exclusion of data values equal to 0
EMODnet Digital Bathymetry (DTM 2016) - Tile B2

The "EMODnet Digital Bathymetry (DTM) - 2016" is a multilayer bathymetric product for Europe’s sea basins covering::
• the Greater North Sea, including the Kattegat and stretches of water such as Fair Isle, Cromarty, Forth, Forties, Dover, Wight, and Portland
• the English Channel and Celtic Seas
• Western and Central Mediterranean Sea and Ionian Sea
• Bay of Biscay, Iberian coast and North-East Atlantic
• Adriatic Sea
• Aegean - Levantine Sea (Eastern Mediterranean)
• Azores - Madeira EEZ
• Canary Islands
• Baltic Sea
• Black Sea
• Norwegian – Icelandic seas

The DTM is based upon more than 7700 bathymetric survey data sets and Composite DTMs that have been gathered from 27 data providers from 18 European countries and involving 169 data originators. The gathered survey data sets can be discovered and requested for access through the Common Data Index (CDI) data discovery and access service that also contains additional European survey data sets for global waters. This discovery service makes use of SeaDataNet standards and services and have been integrated in the EMODnet portal (https://emodnet.ec.europa.eu/en/bathymetry#bathymetry-services ). The Composite DTMs are described using the Sextant Catalogue Service that makes also use of SeaDataNet standards and services. Their metadata can retrieved through interrogating the Source Reference map in the Central Map Viewing service (https://emodnet.ec.europa.eu/geoviewer/ ). 
In addition, the EMODnet Map Viewer gives users wide functionality for viewing and downloading the EMODnet digital bathymetry such as:
• water depth (refering to the Lowest Astronomical Tide Datum - LAT) in gridded form 
on a DTM grid of 1/8 * 1/8 arc minute of longitude and latitude (ca 230 * 230 meters)
• option to view depth parameters of individual DTM cells and references to source data
• option to download DTM in 16 tiles in different formats: EMO, EMO (without GEBCO data), ESRI ASCII, ESRI ASCII Mean Sea Level, XYZ, NetCDF (CF), RGB GeoTiff and SD
• layer with a number of high resolution DTMs for coastal regions
• layer with wrecks from the UKHO Wrecks database.
The NetCDF (CF) DTM files are fit for use in a special 3D Viewer software package which is based on the existing open source NASA World Wind JSK application. It has been developed in the frame of the EU FP7 Geo-Seas project (another sibling of SeaDataNet for marine geological and geophysical data) and is freely available. The 3D viewer also supports the ingestion of WMS overlay maps. The SD files can also be used for 3D viewing by means of the freely available iView4De(Fledermaus) software.

The original datasets themselves are not distributed but described in the metadata services, giving clear information about the background survey data used for the DTM, their access restrictions, originators and distributors and facilitating requests by users to originator.
Marine Meteorological Data from R/V Angeles Alvarino, 2014

The R/V Angeles Alvarino was built in 2012 for oceanographic research purposes. It mainly operates around the Iberian Peninsula and Canary island waters. Since the beginning of its operations, an automatic weather station has been continuously collecting marine meteorological data every minute, both at open sea and in port. The collected data are sent directly to the Spanish Institute of Oceanography (IEO) Data Center / National Oceanographic Data Center for delayed mode quality control and long-term archive. Recently, a semi-automatic process has been used to perform quality control and assessment of the data. Controlled data are stored in a standard MEDAR/MEDATLAS format, and the corresponding quality flag has been added to each individual measurement. This facilitate their reusing for different purposes, from climatology or academical studies to industrial sector needs, between others. In 2014, air temperature, relative humidity, wind speed and direction and solar radiation were collected.
Important Note: This submission has been initially submitted to SEA
scieNtific Open data Edition (SEANOE) publication service and received the recorded DOI.
The metadata elements have been further processed (refined) in EMODnet
Ingestion Service in order to conform with the Data Submission Service
specifications.