AndreaBozzo/ceres-open-data-index huggingface dataset:
EMODnet Human Activities, Dredge Spoil Dumping

The dataset on offshore dredge dumping sites in the European seas was created in 2015 by CETMAR for the European Marine Observation and Data Network (EMODnet). It is the result of the aggregation and harmonization of datasets provided by several sources. It is updated every year and is available for viewing and download on EMODnet web portal (Human Activities, https://emodnet.ec.europa.eu/en/human-activities). The dataset contains points and/or (where available) polygons representing offshore dredge dumping sites in the following countries: Belgium, Bulgaria, Cyprus, Denmark, Estonia, Finland, France, Germany, Greece, Iceland, Ireland, Italy, Latvia, Lithuania, Malta, Norway, Poland, Portugal, Russia, Spain, Sweden and United Kingdom. Each point and polygon has the following attributes (where available): INDEX_ID, Site name, Country, Dredge ID, Dredged material, Year of operation, Information provider, Distance to coast (m) and Distance from centroid to coast (m)(This last attribute only appears for polygon data). The distance to coast (EEA coastline shapefile) has been calculated using the UTM WGS84 Zone projected coordinate system where data fall in.
366_HRDTM_14m_CV17_CelticSea_Ireland

This composite Digital Terrain Model (cDTM) is a high resolution bathymetry dataset highlighting measurement of depth of water in the ocean. This cDTM covers the Celtic Sea off the coasts of counties Waterford and Cork in Ireland. The EMODnet high resolution DTM covers bathymetry surveys completed between 2002 and 2019. Bathymetric data collected on board research vessels using multi-beam and single-beam echosounder instrumentation. Raw bathymetry processed within CARIS software to produce bathymetry products subsequently converted to NetCDF cDTM for EMODnet. Acquisition, processing and product delivery follows IHO standard s44 Edition 5. cDTM is composed of eight (8) images “merged simply” using GLOBE software. INFOMAR (Integrated Mapping for the Sustainable Development of Ireland’s Marine Resource) is a twenty year programme to map the physical, chemical and biological features of Ireland’s seabed established in 2006. INFOMAR is funded by the Department of Communications, Climate Action and Environment (DCCAE), and delivered by joint management partners Geological Survey Ireland and the Marine Institute. The programme is the successor to the Irish National Seabed Survey (INSS) which ran between 1999 and 2005. INFOMAR concentrates on creating integrated mapping products related to the seabed.
Micro litter - Color of litter per net - Research and monitoring protocols 2015/2021 v2023

This visualization product displays the color of litter in percent per net per year from research and monitoring protocols.
EMODnet Chemistry included the collection of marine litter in its 3rd phase. Before 2021, there was no coordinated effort at the regional or European scale for micro-litter. Given this situation, EMODnet Chemistry proposed to adopt the data gathering and data management approach as generally applied for marine data, i.e., populating metadata and data in the CDI Data Discovery and Access service using dedicated SeaDataNet data transport formats. EMODnet Chemistry is currently the official EU collector of micro-litter data from Marine Strategy Framework Directive (MSFD) National Monitoring activities (descriptor 10).
A series of specific standard vocabularies or standard terms related to micro-litter have been added to SeaDataNet NVS (NERC Vocabulary Server) Common Vocabularies to describe the micro-litter.
European micro-litter data are collected by the National Oceanographic Data Centres (NODCs). Micro-litter map products are generated from NODCs data after a test of the aggregated collection including data and data format checks and data harmonization.

A filter is applied to represent only micro-litter sampled according to research and monitoring protocols as MSFD monitoring.

To calculate percentages for each color, formula applied is:
Color (%) = (∑number of particles of each color)*100 / (∑number of particles of all color)
When the number of microlitters was not filled or zero, the percentage could not be calculated.

Standard vocabularies for microliter colors are taken from Seadatanet's H04 library (https://vocab.seadatanet.org/v_bodc_vocab_v2/search.asp?lib=H04)

Warning: the absence of data on the map doesn't necessarily mean that they don't exist, but that no information has been entered in the National Oceanographic Data Centre (NODC) for this area.
Marine Nature Conservation Review (MNCR) and associated benthic marine data held and managed by JNCC

This dataset includes the survey data that were collected during the Marine Nature Conservation Review (MNCR) between 1987 and 1998, together with data from surveys commissioned by the Nature Conservancy Council in the 1970s and 1980s and data collected subsequently by JNCC. The MNCR was initiated to provide a comprehensive baseline of information on marine habitats and their associated species around the coast of Britain which would aid coastal zone and sea-use management and to contribute to the identification of areas of marine natural heritage importance. The focus of MNCR work was on benthic habitats (often referred to as 'biotopes') in intertidal and inshore (typically within 3nm) subtidal areas.
Purpose of data capture: The main purpose of the MNCR programme was to advance the basic knowledge of the near shore benthos. This included: - identifying sites and species of nature conservation importance. - extend our knowledge of benthic marine habitats, communities and species in Great Britain, particularly through description of their characteristics, distribution and extent. - provide information through the data collected to support more general measures required to minimize adverse effects of development.

Methods of data capture: The majority of data were collected using methods described in the MNCR Rationale and Methods report (Hiscock 1996). Broadly, this encompassed surveying a range of sites within a geographical area to sample and describe the variety of habitats present (sampling habitats in different substrata, depths, wave exposures, current regimes, salinity regimes and so on). Each habitat was sampled using semi-quantitative recording techniques (SACFOR abundance scales) for recording epibiota on rocky habitats.

Geographical coverage: This dataset relates to Great Britain. Note that other equivalent datasets exist which include data which JNCC are not responsible for. These have additional coverage for Great Britain and equivalent data for Ireland.

Temporal coverage: The bulk of the data were collected during the 1980s and 1990s, but some data are from the 1970s or earlier.

Data quality: The data have been extensively checked during the course of the creation of the various reports produced by the MNCR programme. This included the MNCR Area Summary report series which describes the marine habitats in particular regions around the UK and the creation of the national marine habitat (biotope) classification system. Through this work the vast majority of the anomalies and errors in the data should have been identified but owing to the size of the dataset some may still remain.
SNU-FF Mollusca (2001-2002)

The mollusc fauna of the Southern Black Sea coast (Sinop, Turkey) was semi-quantitatively investigated during 2001-2002 at 12 stations.
Samples were taken at 12 stations along the Sinop coast line of the Black Sea (Turkey).Sediments were sampled during four different sampling events: July 2001, October 2001, February 2002 and May 2002. However, for every station, these four separate sampling events were combined to one range.During each sampling event, samples were taken at four different depths: 0-0.5m, 5m, 10m and 15m. Similar to the sampling events, for every station, these four separate sampling depths were combined to one depth range.The most shallow depth (0-0.5m) was sampled by quadrat, with a sample size of individuals/625 cm². The other depths were sampled by dredge, with an unknown sample size. Since samples taken with two different tools were combined, no general sample size can be provided.Longitude and latitude were provided for every sampling depth at every station, i.e. four coordinate sets per station. These were recalculated to one mean center longitude and one mean center latitude per station. In the online dataset, also minimum longitude, maximum longitude, minimum latitude and maximum latitude are given per station. Coordinate precision is the maximal distance (in meter) of the four sampling positions per station to this central point.Since sampling events and sampling depths were combined,  and therefore only one abundance value is available per station per species, these data should be considered as semi-quantitative.28 mollusc species could be observed.
EMODnet Digital Bathymetry (DTM 2022) - Tile C3

The "EMODnet Digital Bathymetry (DTM)- 2022" is a multilayer bathymetric product for Europe’s sea basins covering:
•  the Greater North Sea, including the Kattegat and stretches of water such as Fair Isle, Cromarty, Forth, Forties,Dover, Wight, and Portland 
•  the English Channel and Celtic Seas  
•  Western Mediterranean, the Ionian Sea and the Central Mediterranean Sea 
•  Iberian Coast and Bay of Biscay (Atlantic Ocean) 
•  Adriatic Sea (Mediterranean) 
•  Aegean - Levantine Sea (Mediterranean). 
•  Madeira and Azores (Macaronesia) 
•  Baltic Sea 
•  Black Sea 
•  Norwegian and Icelandic Seas 
•  Canary Islands (Macaronesia) 
•  Arctic region and Barentz Sea

The DTM is based upon 21937 bathymetric survey data sets and Composite DTMs that have been gathered from 64 data providers from 28 countries riparian to European seas and beyond. Also Satellite Derived Bathymetry data products have been included fro Landsat 8 and Sentinel satellite images. Areas not covered by observations are completed by integrating GEBCO 2022 and IBCAO V4.

The source reference layer in the portal viewing service gives metadata of the data sets used with their data providers; the metadata also acknowledges the data originators. The incorporated survey data sets itself can be discovered and requested for access through the Common Data Index (CDI) data discovery and access service that in December 2022 contained > 41.000survey data sets from European data providers for global waters. The Composite DTMs can be discovered through the Sextant Catalogue service. Both discovery services make use of SeaDataNet standards and services and have been integrated in the EMODnet portal (https://emodnet.ec.europa.eu/en/bathymetry#bathymetry-services ).
In addition, the EMODnet Map Viewer (https://emodnet.ec.europa.eu/geoviewer/ ) gives users wide functionality for viewing and downloading the EMODnet digital bathymetry such as:
• water depth (refering to the Lowest Astronomical Tide Datum - LAT) in gridded form on a DTM grid of 1/16 * 1/16 arc minute of longitude and latitude (ca 115 * 115 meters).
• option to view depth parameters of individual DTM cells and references to source data
• option to download DTM in 58 tiles in different formats: ESRI ASCII, XYZ, EMODnet CSV, NetCDF (CF), GeoTiff and SD
• option to visualize the DTM in 3D in the browser without plug-in
• layer with a number of high resolution DTMs for coastal regions
• layer with wrecks from the UKHO Wrecks database.

The EMODnet DTM is also available by means of OGC web services (WMS, WFS, WCS, WMTS), which are specified at the EMODnet Bathymetry portal.  
The original datasets themselves are not distributed but described in the metadata services, giving clear information about the background survey data used for the DTM, their access restrictions, originators and distributors and facilitating requests by users to originator.
EMODnet Digital Bathymetry (DTM 2024) - Tile H3

The "EMODnet Digital Bathymetry (DTM)- 2024" is a multilayer bathymetric product for Europe’s sea basins covering:
•  the Greater North Sea, including the Kattegat and stretches of water such as Fair Isle, Cromarty, Forth, Forties,Dover, Wight, and Portland 
•  the English Channel and Celtic Seas  
•  Western Mediterranean, the Ionian Sea and the Central Mediterranean Sea 
•  Iberian Coast and Bay of Biscay (Atlantic Ocean) 
•  Adriatic Sea (Mediterranean) 
•  Aegean - Levantine Sea (Mediterranean). 
•  Madeira and Azores (Macaronesia) 
•  Baltic Sea 
•  Black Sea 
•  Norwegian and Icelandic Seas 
•  Canary Islands (Macaronesia) 
•  Arctic region and Barentz Sea

The DTM is based upon 22032 bathymetric survey data sets and Composite DTMs that have been gathered from 66 data providers from 28 countries riparian to European seas and beyond. Also Satellite Derived Bathymetry data products have been included fro Landsat 8 and Sentinel satellite images. Areas not covered by observations are completed by integrating GEBCO 2024 and IBCAO V4.

The source reference layer in the portal viewing service gives metadata of the data sets used with their data providers; the metadata also acknowledges the data originators. The incorporated survey data sets itself can be discovered and requested for access through the Common Data Index (CDI) data discovery and access service that contains > 41.000survey data sets from European data providers for global waters. The Composite DTMs can be discovered through the Sextant Catalogue service. Both discovery services make use of SeaDataNet standards and services and have been integrated in the EMODnet portal (https://emodnet.ec.europa.eu/en/bathymetry#bathymetry-services ).
In addition, the EMODnet Map Viewer (https://emodnet.ec.europa.eu/geoviewer/ ) gives users wide functionality for viewing and downloading the EMODnet digital bathymetry such as:
• water depth (refering to the Lowest Astronomical Tide Datum - LAT) in gridded form on a DTM grid of 1/16 * 1/16 arc minute of longitude and latitude (ca 115 * 115 meters).
• option to view depth parameters of individual DTM cells and references to source data
• option to download DTM in 59 tiles in different formats: ESRI ASCII, XYZ, EMODnet CSV, NetCDF, GeoTiff and SD
• option to visualize the DTM in 3D in the browser without plug-in
• layer with a number of high resolution DTMs for coastal regions
• layer with wrecks from the UKHO Wrecks database.

The EMODnet DTM is also available by means of OGC web services (WMS, WFS, WCS, WMTS), which are specified at the EMODnet Bathymetry portal.  
The original datasets themselves are not distributed but described in the metadata services, giving clear information about the background survey data used for the DTM, their access restrictions, originators and distributors and facilitating requests by users to originator.
Contaminants-Fluoranthene: water stations v2019

This product displays the stations present in EMODnet validated dataset where fluoranthene levels have been measured in water.
EMODnet Chemistry has included the gathering of contaminants data since the beginning of the project in 2009. 
For the maps for EMODnet Chemistry Phase III, it was requested to plot data per matrix (water,sediment, biota), per biological entity and per chemical substance. 
The series of relevant map products have been developed according to the criteria D8C1 of the MSFD Directive, specifically focusing on the requirements under the new Commission Decision 2017/848 (17th May 2017). The Commission Decision points to relevant threshold values that are specified in the WFD, as well as relating how these contaminants should be expressed (units and matrix etc.) through the related Directives i.e. Priority substances for Water. EU EQS Directive does not fix any threshold values in sediments. On the contrary Regional Sea Conventions provide some of them, and these values have been taken into account for the development of the visualization products.
To produce the maps the following process has been followed:
    1. Data collection through SeaDataNet standards (CDI+ODV)
    2. Harvesting, harmonization, validation and P01 code decomposition of data
    3. SQL query on data sets from point 2 
    4. Production of map with each point representing at least one record that match the criteria
The harmonization of all the data has been the most challenging task considering the heterogeneity of the data sources, sampling protocols.
Preliminary processing were necessary to harmonize all the data :
    • For water: contaminants in the dissolved phase;
    • For sediment: data on total sediment (regardless of size class) or size class < 2000 μm
    • For biota: contaminant data will focus on molluscs, on fish (only in the muscle), and on crustaceans
    • Exclusion of data values equal to 0
Third part of Dr. John K. Hall data and information  (International Bathymetric Charts of the Mediterranean Sea and other documents)

The content of the file package comprises:
1) Postcards in pdf format, regarding the Mediterranean Sea, showing  a Tectonic Map, a Marine Magnetic a Anomalies Map, a Sediment Map, a Plio-Quaternary Map, a Seismicity Map and a Bouger Gravity Anomalies Map (see directory wetransfer-253deb);
2) Books: GEOLOGICAL FRAMEWORK of the LEVANT VOLUME I: CYPRUS and SYRIA and VOLUME II: The LEVANTINE BASIN and ISRAEL ( see directory wetransfer-253deb);
3) Digital bathymetric contour and coastline data from the First Edition  of the International Bathymetric Chart of the Mediterranean (IBCM) (see directory wetransfer-c507a2);
2011, Envision, Isle of Lewis Wave Array,Benthic Survey

Lewis Wave Power Ltd. (LWP) (a wholly owned subsidiary of Aquamarine Power Ltd.) was seeking to develop a wave energy demonstration array off the west coast of the Isle of Lewis. As a first stage of the Environmental Impact Assessment (EIA) for the project, LWP commissioned Royal Haskoning Ltd. to produce an Environmental Scoping Report (Lewis Wave Power Ltd., 2011) to facilitate the identification and assessment of the potential environmental impacts associated with the project. 

The survey reported on here formed this field-based benthic component. Its purpose was to provide site-specific benthic data to inform an assessment of impact of the proposed development.

 The key objectives were to:  Determine the distribution and abundance of marine habitats and communities within the study areas; Determine the substrate type at all locations sampled and Identify habitats or species of conservation importance.
EMODnet Human Activities, Energy, Wind Farms

The dataset on offshore wind farms in the European seas was created in 2014 by CETMAR for the European Marine Observation and Data Network (EMODnet). It is the result of the aggregation and harmonization of datasets provided by several sources. It is updated every year and it is available for viewing and download on EMODnet web portal (Human Activities, https://emodnet.ec.europa.eu/en/human-activities). The dataset contains points and/or (where available) polygons representing offshore wind farms in the following countries: Belgium, Denmark, Estonia, Finland, France, Germany, Greece, Ireland, Italy, Latvia, Lithuania, Netherlands, Norway, Poland, Portugal, Spain, Sweden and United Kingdom. Each point and polygon has the following attributes (where available): Name, Nº of turbines, Status (Approved, Planned, Dismantled, Construction, Production, Test site), Type of installation, Country, Update year, Start year, Power (MW), Distance to coast (metres) and Area (square kilometres). The distance to coast (EEA coastline shapefile) has been calculated using the UTM WGS84 Zone projected coordinate system where data fall in.
Seafloor bedforms in the Gulf of Cadiz. ·3D

Image from ROV Argus showing bedforms in the distal furrow area of the
upper contouritic terrace eroded by the Mediterranean Outflow Water in the continental slope of the Gulf of Cadiz. Ripple distribution with different crestlines, rectilinear to sinuous.  Interaction between ripples with coalescing crescent shaped crestlines and small-scale furrows.
EMODnet Human Activities, Urban Waste Water Treatment Directive, Treatment Plants

The dataset on coastal Urban Waste Water Treatment Plant (UWWTP) was created in 2019 by AZTI for the European Marine Observation and Data Network (EMODnet). It is based on the dataset "Waterbase-UWWTD" (Urban Waste Water Treatment Directive – reported data) provided by the European Topic Centre on Inland, Coastal and Marine waters, and made available at https://www.eea.europa.eu/en/datahub/datahubitem-view/6244937d-1c2c-47f5-bdf1-33ca01ff1715. The datset is available for viewing and download on EMODnet - Human Activities web portal (https://emodnet.ec.europa.eu/en/human-activities). Based on data selected from the reporting of Member States as part of the UWWTD implementation, the dataset presents the available information (location, capacity and actual load treated, type of treatment, aggregated data on the performance of plants) on individual UWWTP, and collecting systems without UWWTP, located in  NUTS3 regions bordering transitional, coastal and marine waters. The geographic coverage is: Belgium, Bulgaria, Croatia, Cyprus, Denmark, Estonia, Finland, France, Germany, Greece, Iceland, Ireland, Italy, Latvia, Lithuania, Malta, Netherlands, Norway, Poland, Portugal, Romania, Slovenia, Spain, Sweden, United Kingdom. The description of all attribute fields of UWWTP is given in the Waterbase-UWWTD (https://www.eea.europa.eu/en/datahub/datahubitem-view/6244937d-1c2c-47f5-bdf1-33ca01ff1715). In this update, data provided by several countries during 2022 (Waterbase reported under UWWTD data call 2023 - PROVISIONAL PUBLIC VERSION, Dec. 2024) are included.
Biological data from EUROFLEETS+ PHYCOB cruise 2021 in the Black Sea

PHYCOB  - Assessment of phycotoxins and their producing species in the Black Sea. The main scientific objectives for the proposed research cruise are: 1) To assess the presence of toxic microalgae in the plankton assemblage of the Western Black Sea. 2) To quantitatively determine the spatial distribution of toxic phytoplankton species and their corresponding toxins in the plankton. 3) To quantitatively describe the spatial distribution of toxic phytoplankton resting stages in surface sediments and determine hotspots of recruitment and bloom initiation. 4) To define correlations among hydrographic and/or meteorological conditions and occurrence of HAB species. 5) To characterize the plankton communities accompanying HAB species together with toxin analysis of size fractionated samples. 6) To identify heterotrophic dinoflagellates, ciliates, or other small zooplankton as possible toxin vectors. 7) To isolate toxic Black Sea microalgal species and establish monoclonal cultures for characterization of Black Sea strains. 8) To perform an interseasonal comparison of toxigenic plankton species by combining the data sets collected during the R/V Akademik cruise that was performed in May/June 2019 with our data from summer. 9) To compare the data set from the Western Black Sea to the Southern (North-) Western North Sea, Baltic Sea and West Greenland obtained during earlier expeditions for site comparisons. The cruise started on 11th September from Istanbul and ended on 17th September back to Istanbul on board of the R/V Tübitak Marmara. 
Important Note: This submission has been initially submitted to SEA
scieNtific Open data Edition (SEANOE) publication service and received the recorded DOI.
The metadata elements have been further processed (refined) in EMODnet
Ingestion Service in order to conform with the Data Submission Service
specifications.