AndreaBozzo/ceres-open-data-index huggingface dataset:
Scientific survey catch data: Bentho-demersal assemblages in Mediterranean sea (Corsica and Sardinia) in 1963

This dataset contains an inventory of bentho-demersal fauna captured by bottom trawling in Corsica and in the north of Sardinia. There are also counts, measurements of weight, length and sexe determination of individuals. This exploratory bottom trawl survey aimed at evaluating the fishing possibilities in the region. Unfortunatly the exact location of each station could not be recovered. According to the institute 1964 activity report, this survey carried out in November and December 1963 enabled to locate trawlable areas in deep waters off Eastern Corsica, in particular off Bastia, Aleria and Solenzara. It also permitted to locate high yield deep shrimps’ areas off the coasts of Sardinia, in particular the south coast between the capes Spartivento and Sperone, the west coast between the cape Sperone and the gulf d’Oristano and between the capes Mannu and Argenteria and the north-east coast off cape Ferro.
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CHALIST survey catch data: Bentho-demersal assemblages of the Gulf of Lion (North-western Mediterranean) from 1983 to 1992

This dataset includes all the CHALIST surveys between 1983 and 1992, that is five surveys undertaken in 1983, 1985, 1986, 1987 and 1992. The aim of CHALIST surveys was to evalute the demersal resources of the Gulf of Lion in order to monitor annual variations of the main commercial species in terme of spatial distribution, average weight and size and age compositions and abundance indices. All the target species collected were identified, weighted and counted. Length measurements were also carried out for a number of species.
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3D otolith mesh dataset of red mullet (Mullus barbatus) in the Mediterranean Sea

This dataset includes 3D sagittal left otolith meshes obtained from 339 individual red mullet (Mullus barbatus) specimens. These samples were collected from 17 distinct geographical locations spanning the whole Mediterranean Sea. Recorded biological parameters include fish total length (TL, ranging from 125 to 238 mm), total weight (W, ranging from 14.9 to 168.0 g), sex, and sexual maturity staging. The 3D otolith dataset consists of high-resolution meshes obtained through microtomography (29.2 m voxel size). The dataset provides valuable insights into the morphological variability and population structure of red mullet populations in the Mediterranean Sea.
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Non-Hierarchical habitat classification in the Atlantic Ocean

Classification of the seabed in the Atlantic Ocean into broad-scale benthic habitats employing a non-hierarchical top-down clustering approach aimed at informing Marine Spatial Planning. This work was performed at the University of Plymouth in 2021 with data provided by a wide group of partners representing the nations surrounding the Atlantic Ocean. It classifies continuous environmental data into discrete classes that can be compared to observed biogeographical patterns at various scales. It has 3 levels of classification. The numbers in the raster layer correspond to individual classes. Description of these classes is given in McQuaid, K.A. et al. (2023).
Lagoon hydrodynamics of pearl farming atolls in French Polynesia : the case of Apataki Atoll (Tuamotu Archipelago)

Apataki Atoll has been instrumented over a period of 3 months (from April 2022 to late July 2022) separated into 2 Legs. Physical process such as water level, currents ciruclation, water exchanges into passes and "hoa" and water column stratification have been measured to characterized the hydrodynamic functioning of this semi-opened pearl farming atoll. Numerous moorings have been deployed into lagoon, passes, hoa and external reef slope stations with common autonomous oceanographic instruments measuring at high sampling frequency. During the sampling period, one major meteorological event occurred, a distant mega swell hit the South-West Islands of French Polynesia including Apataki on 14th July and has significantly impacted its hydrodynamic. Sampling strategy available on Sextant - (Marine Geographic Information System.)-[https://sextant.ifremer.fr/Donnees/Catalogue#/metadata/e551d586-262e-4071-b881-70d8a1659647] More informations on (ANR MANA project.)-[https://www.coreus.ird.fr/index.php/home-en/home/research/portfolio/ongoing-projects/projet-mana]
Important Note: This submission has been initially submitted to SEA
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Lagoon hydrodynamics of pearl farming atolls in French Polynesia : the case of Raroia Atoll (Tuamotu Archipelago)

Raroia Atoll has been instrumented over a period of 10 months (from May 2018 to late March 2019) separated into 3 Legs and 1 extra leg (namely "shortleg"). Physical process such as water level, wave climate, currents ciruclation, exchanges between ocean and lagoon by passes and "hoa" and water column stratification have been measured to characterized the hydrodynamic functioning of this semi-open pearl farming atoll. Numerous moorings have been deployed into lagoon, hoa, passes and external reef slope stations with common autonomous oceanographic instruments measuring at high sampling frequency.  Sampling strategy available on Sextant - (Marine Geographic Information System.)-[https://sextant.ifremer.fr/Donnees/Catalogue#/metadata/b88e3214-17fe-45d1-9b21-2215564ce092] More informations on (ANR MANA project)-[https://www.coreus.ird.fr/index.php/home-en/home/research/portfolio/ongoing-projects/projet-mana].  
Important Note: This submission has been initially submitted to SEA
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Temperature, conductivity and salinity data of the RADIALES Program, Vigo, 1987-2020

Pressure, temperature, conductivity, and derived salinity data with their associated quality flags from the Vigo section of the monitoring program "Oceanography Time Series in Northern Spain" (RADIALES; https://www.seriestemporales-ieo.net/), carried out by the Instituto Español de Oceanografía. Data were collected biweekly to monthly from August 1987 to September 2020 in the interior of the Ría de Vigo and its adjacent shelf, at four stations with depths ranging from 29 m to 148 m. Data were acquired using MARK III, Sea-Bird Scientific 19 SeaCAT, SBE 9 Plus and SBE 25 Sealogger CTD (conductivity, temperature, depth) profilers. They were processed using Sea-Bird Scientific's Seasoft software package, and subsequently, quality controlled with both ctdcheck (https://github.com/PabloOtero/CTDChecker) and Ocean Data View software. 
Important Note: This submission has been initially submitted to SEA
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Marine Meteorological Data from R/V Angeles Alvarino, 2013

The R/V Angeles Alvarino was built in 2012 for oceanographic research purposes. It mainly operates around the Iberian Peninsula and Canary island waters. Since the beginning of its operations, an automatic weather station has been continuously collecting marine meteorological data every minute, both at open sea and in port. The collected data are sent directly to the Spanish Institute of Oceanography (IEO) Data Center / National Oceanographic Data Center for delayed mode quality control and long-term archive. Recently, a semi-automatic process has been used to perform quality control and assessment of the data. Controlled data are stored in a standard MEDAR/MEDATLAS format, and the corresponding quality flag has been added to each individual measurement. This facilitate their reusing for different purposes, from climatology or academical studies to industrial sector needs, between others. In 2013, air temperature, relative humidity, wind speed and direction and solar radiation were collected.
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Laser grain-size, X-Ray Fluorescence and MSCL data of core MOZ3-CS07 (PAMELA project) from a contourite system located in the Limpopo Corridor (Mozambique margin)

This data are acquired on the piston core MOZ3-CS07 collected during the PAMELA-MOZ3 cruise (Passive Margins Exploration Laboratories project; Moulin and Aslanian, 2016) to characterized a foraminiferal sandy contourite located in the Limpopo Corridor (Indian Ocean, Mozambique margin).
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Lagoon hydrodynamics of pearl farming atolls in French Polynesia : the case of Takaroa Atoll (Tuamotu Archipelago)

Takaroa Atoll has been instrumented for a short period of 3 months (from July 2022 to October 2022) in order to get additionnal data into Takaroa passage (Teauoae Pass). One ADCP has been deployed to measure current direction and speed over the water column to evaluate the water exchanges between the lagoon and the ocean of this semi-open pearl farming atoll. Sampling strategy available on (Sextant - Marine Geographic Information System.)-[https://sextant.ifremer.fr/Donnees/Catalogue#/metadata/ec81af02-e049-4f99-8cc6-748ee0550d32] More informations on (ANR MANA project.)-[https://www.coreus.ird.fr/index.php/home-en/home/research/portfolio/ongoing-projects/projet-mana]
Important Note: This submission has been initially submitted to SEA
scieNtific Open data Edition (SEANOE) publication service and received the recorded DOI.
The metadata elements have been further processed (refined) in EMODnet
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Lagoon hydrodynamics of pearl farming islands in French Polynesia : the case of Gambier Islands

Gambier Islands has been instrumented over a period of 9 months (from June 2019 to late February 2020) separated into 2 Legs. Physical process such as water level, wave climate, currents ciruclation in deep channels, exchanges between intra-lagoons and water column stratification have been measured to characterized the hydrodynamic functioning of this opened pearl farming group of islands. The sampling strategy principally focused on the Rikitea lagoon and on lagoons surroundings Mangareva and Aukena Islands. To do so, autonomous oceanographic instruments measuring at high sampling frequency were deployed on bottom moored stations. Sampling strategy available on Sextant - (Marine Geographic Information System)-[https://sextant.ifremer.fr/Donnees/Catalogue#/metadata/28f3fb15-da3e-4f4c-ac63-ef75dd0c2eb3]. More informations on (ANR MANA project)-[https://www.coreus.ird.fr/index.php/home-en/home/research/portfolio/ongoing-projects/projet-mana].
Important Note: This submission has been initially submitted to SEA
scieNtific Open data Edition (SEANOE) publication service and received the recorded DOI.
The metadata elements have been further processed (refined) in EMODnet
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Lagoon hydrodynamics of pearl farming atolls in French Polynesia : the case of Takapoto Atoll (Tuamotu Archipelago)

Takapoto Atoll has been instrumented over a period of 4 months (from November 2021 to late March 2022). Physical process such as water level, exchanges between ocean and lagoon through "hoa" and water column stratification have been measured to characterized the hydrodynamic functioning of this enclosed pearl farming atoll. Six moorings have been deployed into lagoon, hoa and external reef slope stations with common autonomous oceanographic instruments measuring at high sampling frequency.  Sampling strategy available on Sextant - (Marine Geographic Information System.)-[https://sextant.ifremer.fr/Donnees/Catalogue#/metadata/3545b8c0-7d83-41e2-8315-ef69a725d728] More informations on (ANR MANA project)-[https://www.coreus.ird.fr/index.php/home-en/home/research/portfolio/ongoing-projects/projet-mana].
Important Note: This submission has been initially submitted to SEA
scieNtific Open data Edition (SEANOE) publication service and received the recorded DOI.
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Microsatellites and mitochondrial dataset for the vesicomyid bivalve Christineconcha regab

Distribution of five mitochondrial haplotypes among 176 individuals , and multilocus genotypes at the eight microsatellite loci analysed for a total of 177 individuals, obtained for the vesicomyid bivalve Christineconcha regab from chemiosynthetic sites of the West African Equatorial margin.
Important Note: This submission has been initially submitted to SEA
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AMAZOMIX cruise - Physical datasets

Physical data associated with the AMAZOMIX cruise. The Amazon shelf encompasses a variety of physical processes, such as fluvial inputs, coastal currents, mesoscale, filaments, tides, internal waves and upwelling, influencing nutrient concentrations, chlorophyll and suspended matter. They also affect energy, salt and heat balances; parameters that condition physical/biogeochemical interactions and ecosystem functioning, from bacteria to plankton to fish resources. In particular, internal tidal waves are very energetic in this region. They impact biogeochemical cycles via the vertical mixture induced by their dissipation or vertical movements induced by their propagation. They thus allow a significant input of nutriments into the euphotic layer enhancing primary production, as observed on the surface from watercolour data. Internal tidal waves could thus influence the biological pump and the carbon cycle. In addition, overall marine biodiversity of the region, from bacteria to fish is not well described. The connectivity of species in the tropical Atlantic is also still an open question. The Caribbean region is by far more bio-diverse than the Brazilian one. One of the hypotheses is that the Amazon plume, which can extend up to 3,000 km off the mouth, would constitute a barrier for some organisms. The Amazon Shelf is thus an ideal experimental laboratory to study the impact of physical processes on the structure and function of neritic and oceanic marine ecosystems. In this context, the objective of the multidisciplinary AMAZOMIX survey was to study the impact of the Amazon River plume, internal tides and associated turbulent mixing, on marine ecosystem in contrasting regions off the Amazon shelf. For that purpose, the multidisciplinary AMAZOMIX project brings together physicists, biogeochemists, bioopticians and biologists. The sampling strategy consists in the simultaneous acquisition of a comprehensive set of environmental and biological compartments, including micro-organisms (bacteria, phyto and zooplankton) and higher trophic levels (micronekton, demersal and pelagic fish). AMAZOMIX is the first campaign to develop this multi-disciplinary approach off the Amazon shelf. In situ results will be analysed in interaction with digital tools and data, modelling (1/36°, with and without tides, 1/12° coupled) and satellite data analyses. This dataset contains the AMAZOMIX 2021 qualified measurements of  - The hydrographic CTD-02 (netCDF and csv text files) - Ship Acoustic Doppler Current Profilers (OS 75 kHz, netCDF and csv text files) - Lowered Acoustic Doppler Current Profilers (WH300 downlooking and WH300 uplooking, netCDF and csv text files) - Thermosalinometer (netCDF and csv text files) - Vertical microstructure profile (VMP-250, binary file)  
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SOMLIT-Wimereux (French research infrastructure ILICO) Long Time series in coastal and offshore waters of the eastern English Channel

The two SOMLIT-Wimereux time-series data characterize hydrology and plankton biomass and diversity of the eastern English Channel near Boulogne sur mer, located at 50°40,75'N and 1°31,17'E and 1° 24,64'E . Fortnightly measurements have been undertaken since 1998 by a laboratory involving the CNRS, University of Lille and ULCO, named the Laboratory of Oceanology and Geoscience (UMR 8187 LOG) since 2008 (https://log.cnrs.fr). The SOMLIT-Wimereux observation station is a part of the French monitoring network SOMLIT (https://www.somlit.fr/), accredited by the CNRS as a national Earth Science Observatory (Service National d’Observation : SNO). It aims to detect the long-term evolution of these ecosystems including both natural and anthropogenic forcings. The development of a systematic approach to observing coastal environments is the result of local initiatives, based either on opportunities or on a tradition of scientific culture specific to each Marine Station / Marine Laboratory. The federation of these efforts by four French coastal stations (Roscoff, Arcachon-Bordeaux, Marseille, and Villefranche-sur-Mer), through RESOMAR, led to the establishment of the Service d'Observation en Milieu Littoral (SOMLIT) in 1995. In 1996, SOMLIT was accredited by the INSU (Ocean-Atmosphere domain), giving it the status of National Observation Service (SNO). The first banked data appeared in January 1997. Following new evaluations, SOMLIT was again accredited in 2001, 2005, 2009, 2015, and 2020. Since its creation, various Marine Stations have joined SOMLIT:  1996: Roscoff, Arcachon-Bordeaux, Marseille, and Villefranche-sur-Mer  1997 : Banyuls-sur-Mer  1998 : Wimereux and Brest  2007 : Luc-sur-Mer  2011 : La Rochelle  2012 : Dinard  2015 : Sète  2017 : the station of Anglet started the acquisition of SOMLIT parameters. It is not yet in the labelled perimeter. SOMLIT currently includes 11 Marine Stations / Marine Laboratories within its certified perimeter and a Marine Station that acquires data according to SOMLIT protocols. In addition to the acquisition of all the parameters collected under the SNO SOMLIT, additional samples are taken by some LOG researchers to support other SNOs (PHYTOBS, U. Christaki) and related research activities related to the characterization of microbial diversity using molecular tools (S. Monchy & U. Christaki), microbial and phytoplanktonic dynamics using automated approaches (F. Artigas), photosynthetic activity using automated variable fluorescence (F. Lizon) and zooplankton diversity (A. Delegrange).
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CARING cruise biogeochemical data (nutrients, pH, total alkalinity, pCO2)

This dataset contains the CARING cruise qualified measurements of inorganic nutrient, pH, and total alkalinity profile bottle data, and underway pCO2 data. This dataset includes water column and underway biogeochemical data measured across the Gulf Stream and associated mesoscale eddies.
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Sedimentary core CAS16-01PC dataset from CASEIS Cruise

This dataset contains the data acquired on the 9 m-long core CAS16-01PC (16°24.576’N, 60°23.648’W, 5203 mbsl) sampled with the Calypso piston coring system in the Karukera Basin offshore the Guadeloupe island (Lesser Antilles) during the research cruise (CASEIS)-[https://doi.org/10.17600/16001800] (DOI 10.17600/16001800) on board of the R/V Pourquoi Pas?,  between May 28th to July 05th 2016. The core was divided in six  150 cm-thick sections. This dataset consists of the raw data measured: 1) on board with the GEOTECK Multi Sensor Core Logger of the Quebec University at Rimouski (on the whole core: P-wave velocity, gamma density, and volumetric magnetic susceptibility; and on the split core:  high resolution photographs, surface magnetic susceptibility and spectrophotocolorimetry); and 2) the X-ray images with the GEOTEK X-ray CT and the semi-quantitative chemical elementary profiles with an AVAATECH XRF core scanner at IFREMER. 34 turbidites has been identified intercalated with hemipelagic sediment layers. 
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Data from IOPD cruise Part 2 Water sample analysis and plankton identifications

The Eurofleets+ IOPD research cruise took place from 28/06/2022 till 10/07/2022 in the Uummannaq region in West Greenland where a total of five fjords and the connecting shelf area were sampled. This data upload "Data from IOPD cruise Part 2 Water sample analysis and plankton identifications" contains: -Nutrient data of NH4, NO2, NO3, NOX, PO4 and DSi. -Chlorophyll a data. -Fatty acid profiles (in relative abundance) of the microzooplankton and mesozooplankton community. At certain stations the dominant species was picked out to have a separate fatty acid profile. -Phytoplankton identifications and counts by a FlowCam. - Zooplankton identifications of MultiNet samples by microscopy. A maximum of 10 specimen per species, per net, per sampling station were measured. - Zooplankton identifications of the Video Plankton Recorder data, accompanied with depth, temperature, salinity, turbidity, and fluorescence data from the CTD and FLNTU sensors mounted on the VPR.
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