AndreaBozzo/ceres-open-data-index huggingface dataset:
European floating micro-litter standardized, harmonized and validated datasets 2011/2023 v2024

EMODnet Chemistry aims to provide access to marine chemistry datasets and derived data products concerning eutrophication, acidity, contaminants and marine litter. The importance of the selected substances and other parameters relates to the Marine Strategy Framework Directive (MSFD). This aggregated dataset contains all unrestricted EMODnet Chemistry data on floating micro-litter.

This dataset is the result of a validation and harmonisation process of the datasets concerning floating micro-litter present in EMODnet Chemistry. The datasets concerning micro-litter are automatically harvested and the resulting collections are harmonised and validated using ODV Software and following a common methodology for all sea regions. Parameter names are based on P01 vocabulary, which relates to BODC Parameter Usage Vocabulary and is available at: https://vocab.nerc.ac.uk/search_nvs/P01/
This process was performed by ‘Istituto Nazionale di Oceanografia e di Geofisica Sperimentale, Division of Oceanography (OGS/NODC)’ from Italy.

Harmonisation means that: (1) unit conversion is carried out to express variables with a limited set of measurement units and (2) merging of variables described by different “local names”, but corresponding exactly to the same concepts in BODC P01 vocabulary.
The harmonised dataset can be downloaded as ODV collection that can be opened with ODV software for visualization (More information can be found at: https://www.seadatanet.org/Software/ODV ).  The same dataset is offered as spreadsheet (txt format, tab separated values) where the values of the categories for the following reported parameters (type, shape, size, color, transparency and material) have been uniformed as labelled in the SeaDataNet H01, H02, H03, H04, H05, H06 vocabularies (https://vocab.seadatanet.org/search ). This format is more adapted to worksheet applications (e.g. LibreOffice Calc).
Black Sea - Contaminants aggregated datasets 1974/2017 v2018

EMODnet Chemistry aims to provide access to marine chemistry data sets and derived data products concerning eutrophication, ocean acidification and contaminants. The chemicals chosen reflect importance to the Marine Strategy Framework Directive (MSFD). This regional aggregated dataset contains all unrestricted EMODnet Chemistry data on contaminants (48 parameters), and covers the Black Sea with 21504 CDI records divided per matrices: 7 biota profiles, 19677 water profiles, 1820 sediment profiles. Vertical profiles temporal range is from 1974-08-24 to 2017-10-06. Data were aggregated and quality controlled by ‘National Institute for Marine Research and Development "Grigore Antipa"’ from Romania.		
Regional datasets concerning contaminants are automatically harvested. Parameter names in these datasets are based on P01, BODC Parameter Usage Vocabulary, which is available at: http://seadatanet.maris2.nl/bandit/browse_step.php . Each measurement value has a quality flag indicator. The resulting data collections for each Sea Basin are harmonised, and the collections are quality controlled by EMODnet Chemistry Regional Leaders using ODV Software and following a common methodology for all Sea Regions. 
Harmonisation means that: (1) unit conversion is carried out to express contaminant concentrations with a limited set of measurement units (according to EU directives 2013/39/UE; Comm. Dec. EU 2017/848) and (2) merging of variables described by different “local names”, but corresponding exactly to the same concepts in BODC P01 vocabulary.
The harmonised dataset can be downloaded as ODV spreadsheet (TXT file), which is composed of metadata header followed by tab separated values. This worksheet can be imported to ODV Software for visualisation (More information can be found at: https://www.seadatanet.org/Software/ODV ).
The same dataset is offered also as XLSX file in a long/vertical format, in which each P01 measurement is a record line. Additionally, there are a series of columns that split P01 terms in subcomponents (measure, substance, CAS number, matrix...).This transposed format is more adapted to worksheet applications users (e.g. LibreOffice Calc).
The 48 parameter names in this metadata record are based on P02, SeaDataNet Parameter Discovery Vocabulary, which is available at: http://seadatanet.maris2.nl/v_bodc_vocab_v2/vocab_relations.asp?lib=P02 .
Detailed documentation will be published soon.
The original datasets can be searched and downloaded from EMODnet Chemistry Download Service: https://emodnet-chemistry.maris.nl/search
North Sea - Contaminants aggregated datasets 1970/2017 v2018

EMODnet Chemistry aims to provide access to marine chemistry data sets and derived data products concerning eutrophication, ocean acidification and contaminants. The chemicals chosen reflect importance to the Marine Strategy Framework Directive (MSFD). This regional aggregated dataset contains all unrestricted EMODnet Chemistry data on contaminants (59 parameters), and covers the North Sea with 34978 CDI records divided per matrices: 3909 biota time series, 28071 water profiles, 2998 sediment profiles. Vertical profiles temporal range is from 1970-02-17 to 2017-10-26. Time series temporal range is from 1979-02-26 to 2017-02-28. Data were aggregated and quality controlled by ‘Aarhus University, Department of Bioscience, Marine Ecology Roskilde from Denmark.	
Regional datasets concerning contaminants are automatically harvested. Parameter names in these datasets are based on P01, BODC Parameter Usage Vocabulary, which is available at: http://seadatanet.maris2.nl/bandit/browse_step.php . Each measurement value has a quality flag indicator. The resulting data collections for each Sea Basin are harmonised, and the collections are quality controlled by EMODnet Chemistry Regional Leaders using ODV Software and following a common methodology for all Sea Regions.
Harmonisation means that: (1) unit conversion is carried out to express contaminant concentrations with a limited set of measurement units (according to EU directives 2013/39/UE; Comm. Dec. EU 2017/848) and (2) merging of variables described by different “local names” ,but corresponding exactly to the same concepts in BODC P01 vocabulary.
The harmonised dataset can be downloaded as ODV spreadsheet (TXT file), which is composed of metadata header followed by tab separated values. This worksheet can be imported to ODV Software for visualisation (More information can be found at: https://www.seadatanet.org/Software/ODV ).
The same dataset is offered also as XLSX file in a long/vertical format, in which each P01 measurement is a record line. Additionally, there are a series of columns that split P01 terms in subcomponents (measure, substance, CAS number, matrix...).This transposed format is more adapted to worksheet applications users (e.g. LibreOffice Calc).
The 59 parameter names in this metadata record are based on P02, SeaDataNet Parameter Discovery Vocabulary, which is available at: http://seadatanet.maris2.nl/v_bodc_vocab_v2/vocab_relations.asp?lib=P02 .
Detailed documentation will be published soon.
The original datasets can be searched and downloaded from EMODnet Chemistry Download Service: https://emodnet-chemistry.maris.nl/search
Micro litter - Color of litter per net - Other specific protocols 2021/2021 v2023

This visualization product displays the color of litter in percent per net per year from specific protocols different from research and monitoring protocols.
EMODnet Chemistry included the collection of marine litter in its 3rd phase. Before 2021, there was no coordinated effort at the regional or European scale for micro-litter. Given this situation, EMODnet Chemistry proposed to adopt the data gathering and data management approach as generally applied for marine data, i.e., populating metadata and data in the CDI Data Discovery and Access service using dedicated SeaDataNet data transport formats. EMODnet Chemistry is currently the official EU collector of micro-litter data from Marine Strategy Framework Directive (MSFD) National Monitoring activities (descriptor 10).
A series of specific standard vocabularies or standard terms related to micro-litter have been added to SeaDataNet NVS (NERC Vocabulary Server) Common Vocabularies to describe the micro-litter.
European micro-litter data are collected by the National Oceanographic Data Centres (NODCs). Micro-litter map products are generated from NODCs data after a test of the aggregated collection including data and data format checks and data harmonization.

A filter is applied to represent only micro-litter sampled according to a very specific protocol such as the Volvo Ocean Race (VOR) or Oceaneye.

To calculate percentages for each color, formula applied is:
Color (%) = (∑number of particles of each color)*100 / (∑number of particles of all color)
When the number of microlitters was not filled or zero, the percentage could not be calculated.

Standard vocabularies for microliter colors are taken from Seadatanet's H04 library (https://vocab.seadatanet.org/v_bodc_vocab_v2/search.asp?lib=H04)

Warning: the absence of data on the map doesn't necessarily mean that they don't exist, but that no information has been entered in the National Oceanographic Data Centre (NODC) for this area.
Seafloor litter - Trawls locations 2006/2022 v2023

This visualization product displays the location of all the surveys present in the EMODnet marine litter database (MLDB). The different fishing gears used are represented by different colors. 

EMODnet Chemistry included the collection of marine litter in its 3rd phase. Since the beginning of 2018, data of seafloor litter collected by international fish-trawl surveys have been gathered and processed in the EMODnet Chemistry Marine Litter Database (MLDB). 
The harmonization of all the data has been the most challenging task considering the heterogeneity of the data sources, sampling protocols (OSPAR and MEDITS protocols) and reference lists used on a European scale. Moreover, within the same protocol, different gear types are deployed during fishing bottom trawl surveys.

Unlike other EMODnet seafloor litter products, all trawls surveyed since 2006 are included in this map even if the wingspread and/or the distance are unknown.
Only surveys with an unknown number of items were excluded from this product.

More information on data processing and calculation are detailed in the document attached.

Warning: the absence of data on the map doesn't necessarily mean that they don't exist, but that no information has been entered in the Marine Litter Database for this area.
Micro litter - Spatial distribution of litter density normalized per km² - Research and monitoring protocols 2011/2021 v2023

This visualization product displays the spatial distribution of litter density normalized per km² per year from research and monitoring protocols.
EMODnet Chemistry included the collection of marine litter in its 3rd phase. Before 2021, there was no coordinated effort at the regional or European scale for micro-litter. Given this situation, EMODnet Chemistry proposed to adopt the data gathering and data management approach as generally applied for marine data, i.e., populating metadata and data in the CDI Data Discovery and Access service using dedicated SeaDataNet data transport formats. EMODnet Chemistry is currently the official EU collector of micro-litter data from Marine Strategy Framework Directive (MSFD) National Monitoring activities (descriptor 10).
A series of specific standard vocabularies or standard terms related to micro-litter have been added to SeaDataNet NVS (NERC Vocabulary Server) Common Vocabularies to describe the micro-litter.
European micro-litter data are collected by the National Oceanographic Data Centres (NODCs). Micro-litter map products are generated from NODCs data after a test of the aggregated collection including data and data format checks and data harmonization.

A filter is applied to represent only micro-litter sampled according to research and monitoring protocols as MSFD monitoring.
Densities were calculated for each net using the following calculation:
Density (number of particles per km²) = Micro-litter count / (Sampling effort (km) * Net opening (cm) * 0.00001)

When the number of microlitters or the net opening was not filled, the density could not be calculated.

The spatial distribution was then determined by calculating the weighted average of the densities in each cell using the following formula:
Weighted average of the cell c (number of particles per km²) = ( (Sampling effort (km) of net 1 * Density (number of particles per km²) of net 1) + … + (Sampling effort (km) of net N * Density (number of particles per km²) of net N) ) / ∑ Sampling effort (km) of all nets in the cell c.

Percentiles 50, 75, 95 & 99 have been calculated taking into account data for all years.

Warning: the absence of data on the map doesn't necessarily mean that they don't exist, but that no information has been entered in the National Oceanographic Data Centre (NODC) for this area.

This work is based on the work presented in the following scientific article:
O. Gerigny, M. Brun, M.C. Fabri, C. Tomasino, M. Le Moigne, A. Jadaud, F. Galgani, Seafloor litter from the continental shelf and canyons in French Mediterranean Water: Distribution, typologies and trends, Marine Pollution Bulletin, Volume 146, 2019, Pages 653-666, ISSN 0025-326X, https://doi.org/10.1016/j.marpolbul.2019.07.030.
Seafloor litter - Spatial distribution of fishing related items density normalized per km² 2011/2024 v2025

This visualization product displays the spatial distribution of fishing related items density per trawl.

EMODnet Chemistry included the collection of marine litter in its 3rd phase. Since the beginning of 2018, data of seafloor litter collected by international fish-trawl surveys have been gathered and processed in the EMODnet Chemistry Marine Litter Database (MLDB). 
The harmonization of all the data has been the most challenging task considering the heterogeneity of the data sources, sampling protocols (OSPAR and MEDITS protocols) and reference lists used on a European scale. Moreover, within the same protocol, different gear types are deployed during bottom trawl surveys.

In cases where the wingspread and/or number of items were/was unknown, it was not possible to use the data because these fields are needed to calculate the density. Data collected before 2011 are concerned by this filter.

When the distance reported in the data was null, it was calculated from:
- the ground speed and the haul duration using the following formula: Distance (km) = Haul duration (h) * Ground speed (km/h);
- the trawl coordinates if the ground speed and the haul duration were not filled in.

The swept area was calculated from the wingspread (which depends on the fishing gear type) and the distance trawled:
Swept area (km²) = Distance (km) * Wingspread (km)

Densities were calculated on each trawl and year using the following computation:
Density of fishing related items (number of items per km²) = ∑Number of fishing related items / Swept area (km²)

Then a grid with 30km x 30km cells was used to calculate the weighted mean of densities in each cell from the formula :
Weighted mean (number of items per km²) = ∑ (Distance (km) * Density (number of items per km²)) / ∑ Distance (km)

Percentiles 50, 75, 95 & 99 were calculated taking into account data for all years.

More information on data processing and calculation are detailed in the attached methodology document.

Warning: the absence of data on the map does not necessarily mean that they do not exist, but that no information has been entered in the Marine Litter Database for this area.

This work is based on the work presented in the following scientific article:
O. Gerigny, M. Brun, M.C. Fabri, C. Tomasino, M. Le Moigne, A. Jadaud, F. Galgani, Seafloor litter from the continental shelf and canyons in French Mediterranean Water: Distribution, typologies and trends, Marine Pollution Bulletin, Volume 146, 2019, Pages 653-666, ISSN 0025-326X, https://doi.org/10.1016/j.marpolbul.2019.07.030.
Beach litter - Beaches locations & litter list used - Other sources 2001/2024 v2025

This visualization product displays beaches locations where non-MSFD monitoring surveys, research & cleaning operations have been applied to collate data on macrolitter (> 2.5 cm).
Reference lists associated with these protocols have been indicated with different colors in the map.

EMODnet Chemistry included the collection of marine litter in its 3rd phase. Since the beginning of 2018, data of beach litter have been gathered and processed in the EMODnet Chemistry Marine Litter Database (MLDB).
The harmonization of all the data has been the most challenging task considering the heterogeneity of the data sources, sampling protocols and reference lists used on a European scale.


Preliminary processings were necessary to harmonize all the data:
		- Exclusion of OSPAR 1000 protocol: in order to follow the approach of OSPAR that it is not including these data anymore in the monitoring;
		- Selection of surveys from non-MSFD monitoring, cleaning and research operations;
		- Exclusion of beaches without coordinates;
		- Some categories & some litter types like organic litter, small fragments (paraffin and wax; items > 2.5cm) and pollutants have been removed. The list of selected items is attached to this metadata. This list was created using EU Marine Beach Litter Baselines, the European Threshold Value for Macro Litter on Coastlines and the Joint list of litter categories for marine macro-litter monitoring from JRC (these three documents are attached to this metadata).

More information is available in the attached documents.


Warning: the absence of data on the map does not necessarily mean that they do not exist, but that no information has been entered in the Marine Litter Database for this area.
Micro litter - Density per net normalized per liter - Research and monitoring protocols 2016/2021 v2023

This visualization product displays the density of floating micro-litter per net normalized per liter per year from research and monitoring protocols.
EMODnet Chemistry included the collection of marine litter in its 3rd phase. Before 2021, there was no coordinated effort at the regional or European scale for micro-litter. Given this situation, EMODnet Chemistry proposed to adopt the data gathering and data management approach as generally applied for marine data, i.e., populating metadata and data in the CDI Data Discovery and Access service using dedicated SeaDataNet data transport formats. EMODnet Chemistry is currently the official EU collector of micro-litter data from Marine Strategy Framework Directive (MSFD) National Monitoring activities (descriptor 10).
A series of specific standard vocabularies or standard terms related to micro-litter have been added to SeaDataNet NVS (NERC Vocabulary Server) Common Vocabularies to describe the micro-litter.
European micro-litter data are collected by the National Oceanographic Data Centres (NODCs). Micro-litter map products are generated from NODCs data after a test of the aggregated collection including data and data format checks and data harmonization.

A filter is applied to represent only micro-litter sampled according to research and monitoring protocols as MSFD monitoring.

Densities were calculated for each net using the following calculation:
Density (number of particles per liter) = Micro-litter count / Sampling effort (l) 
When the number of microlitters was not filled, the density could not be calculated.

Percentiles 50, 75, 95 & 99 have been calculated taking into account data for all years.

Warning: the absence of data on the map doesn't necessarily mean that they don't exist, but that no information has been entered in the National Oceanographic Data Centre (NODC) for this area.
Baltic Sea DIVA 4D analysis of Water_body_nitrate_plus_nitrite

Units: umol/l. Method: spatial interpolation produced with DIVA (Data-Interpolating Variational Analysis). URL: http://modb.oce.ulg.ac.be/DIVA.
		
Comment: Every year of the time dimension corresponds to a 10-year centred average for each season :
- winter season (December-February),
- spring (March-May),
- summer (June-August),
- autumn (September-November).

Diva settings: Snr=1.0, CL=0.7
Micro litter - Nets location & mesh size used - Research and monitoring protocols 2011/2023 v2025

This visualization product displays nets locations where research and monitoring protocols have been applied to collate data on microlitter.

Mesh size used with these protocols have been indicated with different colors in the map.
EMODnet Chemistry included the collection of marine litter in its 3rd phase. Before 2021, there was no coordinated effort at the regional or European scale for micro-litter. Given this situation, EMODnet Chemistry proposed to adopt the data gathering and data management approach as generally applied for marine data, i.e., populating metadata and data in the CDI Data Discovery and Access service using dedicated SeaDataNet data transport formats. EMODnet Chemistry is currently the official EU collector of micro-litter data from Marine Strategy Framework Directive (MSFD) National Monitoring activities (descriptor 10).
A series of specific standard vocabularies or standard terms related to micro-litter have been added to SeaDataNet NVS (NERC Vocabulary Server) Common Vocabularies to describe the micro-litter.
European micro-litter data are collected by the National Oceanographic Data Centres (NODCs). Micro-litter map products are generated from NODCs data after a test of the aggregated collection including data and data format checks and data harmonization.

A filter is applied to represent only micro-litter sampled according to research and monitoring protocols as MSFD monitoring.

Warning: the absence of data on the map does not necessarily mean that they do not exist, but that no information has been entered in the National Oceanographic Data Centre (NODC) for this area.
Beach litter - Beaches locations and litter list used - EU-MSFD monitoring 2001/2021 v2021

This visualization product displays beaches locations where the Marine Strategy Framework Directive (MSFD) monitoring protocol has been applied to collate data on macrolitter (> 2.5 cm).
Reference lists associated with these protocols have been indicated with different colors in the map.

EMODnet Chemistry included the collection of marine litter in its 3rd phase. Since the beginning of 2018, data of beach litter have been gathered and processed in the EMODnet Chemistry Marine Litter Database (MLDB).
The harmonization of all the data has been the most challenging task considering the heterogeneity of the data sources, sampling protocols and reference lists used on a European scale.


Preliminary processing were necessary to harmonize all the data:
		- Exclusion of OSPAR 1000 protocol: in order to follow the approach of OSPAR that it is not including these data anymore in the monitoring;
		- Selection of MSFD surveys only (exclusion of other monitoring, cleaning and research operations);
		- Exclusion of beaches without coordinates;
		- Some categories & some litter types like organic litter, small fragments (paraffin and wax; items > 2.5cm) and pollutants have been removed. The list of selected items is attached to this metadata. This list was created using EU Marine Beach Litter Baselines and EU Threshold Value for Macro Litter on Coastlines from JRC (these two documents are attached to this metadata).

More information is available in the attached documents.


Warning: the absence of data on the map doesn't necessarily mean that they don't exist, but that no information has been entered in the Marine Litter Database for this area.