AndreaBozzo/ceres-open-data-index huggingface dataset:
W4M00002_Sacurine-comprehensive

[Lien vers la fiche source] ## Study Characterization of the physiological variations of the metabolome in biofluids is critical to understand human physiology and to avoid confounding effects in cohort studies aiming at biomarker discovery. In this study conducted by the MetaboHUB French Infrastructure for Metabolomics, urine samples from 184 volunteers were analyzed by reversed-phase (C18) ultrahigh performance liquid chromatography (UPLC) coupled to high-resolution mass spectrometry (LTQ-Orbitrap). ## Dataset The dataset contains 234 mzML files from the negative ionization mode, corresponding to two batches (ne1 = 131 files and ne2 = 127 files), with a total of 24 blanks + 26 pools + 184 samples. The raw files (in both profile Thermo format and centroid mzML format) are available on the MetaboLights repository (MTBLS404). ## Workflow The workflow consists of the following steps: preprocessing with XCMS, pre-annotation with CAMERA, variable filtering (sample mean over blank mean ratio), correction of signal drift (loess model built on QC pools) and batch effects, variable filtering (QC coefficent of variation < 30%), normalization by the sample osmolality, log10 transformation, sample filtering (Hotelling, decile and missing pvalues > 0.001), univariate hypothesis testing of significant variations with age, BMI, or between genders (FDR < 0.05), OPLS(-DA) modeling of age, BMI and gender, and mass annotation by query of the KEGG and HMDB databases. Comments: Compared with the companion ‘W4M00001_Sacurine-statistics’ reference history, this workflow starts from the preprocessing of the raw files and includes all detected features in the subsequent steps (without restricting to identified metabolites only).
W4M00001_Sacurine-statistics

[Lien vers la fiche source] ## Study Characterization of the physiological variations of the metabolome in biofluids is critical to understand human physiology and to avoid confounding effects in cohort studies aiming at biomarker discovery. ## Dataset In this study conducted by the MetaboHUB French Infrastructure for Metabolomics, urine samples from 184 volunteers were analyzed by reversed-phase (C18) ultrahigh performance liquid chromatography (UPLC) coupled to high-resolution mass spectrometry (LTQ-Orbitrap). A total of 258 metabolites were identified at confidence levels provided by the metabolomics standards initiative (MSI) levels 1 or 2. ## Workflow This history describes the statistical analysis of the data set from the negative ionization mode (113 identified metabolites at MSI levels 1 or 2): correction of signal drift (loess model built on QC pools) and batch effects (two batches), variable filtering (QC coefficent of variation < 30%), normalization by the sample osmolality, log10 transformation, sample filtering (Hotelling, decile and missing pvalues > 0.001) resulting in the HU_096 sample being discarded, univariate hypothesis testing of significant variations with age, BMI, or between genders (FDR < 0.05), and OPLS(-DA) modeling of age, BMI and gender. ## Comments The ‘sacurine’ data set (after normalization and filtering) is also available in the ropls R package from the Bioconductor repository. For a comprehensive analysis of the dataset (starting from the preprocessing of the raw files and including all detected features in the subsequent steps), please see the companion ‘W4M00002_Sacurine-comprehensive’ reference history.
W4M00004_GCMS-Algae

[Lien vers la fiche source] ## Study Characterization of the physiological variations of the metabolome in algae exposed to 3 different abiotic stress (salt concentration). ## Dataset The dataset contains 12 mzXML files created from Agilent RAW GC-MS file. 4 replicats per conditions: i) Condition 01: Fresh water strain in 1.6 ppt NaCl; ii) Condition 02: Fresh water strain in 32 ppt NaCl; iii) Condition 03: Sea water strain in 32 ppt NaCl. ## Workflow The workflow consists of the following steps: preprocessing with metaMS (runGC function) then Golm Metabolom Databases online search for annotation. The peakspectra.msp file can be exported and search locally against NIST database with MSsearch software (see "how to" section on W4M portal). The dataMatrix generated by metaMS is used for PCA analysis. ## Comments Please note that, the original publication of the study by Dittami et al do not include the presented GCMS data or their multivariate interpretation.
Flore associée au pied des arbres d'alignement (un boulevard à Dijon, France)

[Lien vers la fiche source] Un inventaire floristique a été réalisé au mois d’avril 2010 sur 76 pieds d’arbres d’alignements répartis le long d'un boulevard à Dijon. Quarante sept espèces ont été recensées et le nombre d'individus comptés (FloreBd.csv). Les arbres et leur environnement sont décrits par différentes variables dans le fichier EnvironnementBd.csv. Le fichier TaxonsBd.csv décrit les taxons trouvés.
Organismes de formation du sanitaire, social et médico-social (rentrée 2022) en région Centre-Val de Loire

Liste des établissements proposant des formations initiales et/ou continues aux métiers des domaines sanitaire, médico-social et social financées par la région Centre-Val de Loire à la rentrée 2022. Niveau et domaine de formation des diplômes, type d'établissements de formation. Voir également : * [Offre de formation professionnelle initiale] * [Offre de formation en apprentissage] * [Organismes de formation professionnelle] * [Actions de formation financées]
[Archive] Organismes de formation professionnelle en Région Centre-Val de Loire (données détaillées) - 2024

Organismes de formation professionnelle dispensant des formations financées par la Région Centre-Val de Loire en 2024. Voir la mise à jour 2025 : [2025] Voir également : [Offre de formation professionnelle initiale en Région Centre-Val de Loire ] [Offre de formation en apprentissage en Région Centre-Val de Loire ] [Actions de formation professionnelle financées par la Région Centre-Val de Loire]
Stakeholders' preferences survey about new technology acceptance and potential development for waste management in wine production in Languedoc Roussillon, France

[Lien vers la fiche source] This dataset contains results of a survey conducted in order to understand the new technology acceptance and potential development for waste management in wine production. A total of six wine-makers and technical centers, two distilleries and three public decision-makers have been interviewed in the Languedoc-Roussillon in July and August 2018. All industries interviewed were close from the city of Montpellier, within a 150 km radius. Interviews were composed of approximately twenty questions evaluating interviewees’ knowledge about new by-products and valorization processes, but also about their preferences, expectations, demands and constraints regarding these new valorization possibilities. Each survey took about 45 minutes to be completed. After having interviewed all stakeholders, all data has been stored in the “NoAWVote”, a software specifically developed for the NoAW project to aggregate stakeholders’ preferences (Karanikolas et al. 2018)
Planification maritime

[Lien vers la fiche source] Le produit « Planification maritime » contient des données vectorielles sous forme d’objets surfaciques 2D représentant l’emprise de la façade maritime (couche « MSP Spatial Plan ») ainsi que les emprises des zones de vocations correspondantes (couche « MSP Zoning Element »), définies dans le document stratégique de chaque façade.
Population of French Guiana-Brazil cross-border localities (2015 - 2016)

[Lien vers la fiche source] Number of inhabitants for the main localities and the main neighborhoods of the cities of Oiapoque (Brazil) and Saint-Georges-de-l'Oyapock (French Guiana), at the French Guiana - Brazil border. Fields: * loc_name: Locality or neighborhood name, among {Benoá, Amomi, Manga, Kumenê, Centro de Oiapoque, Planalto, Clevelândia do Norte, Trois Palétuviers, Paraíso, Kunanã, Ariramba, Japiim, Vila do Taparabó, Huaha, Crikou, Açaizal, Nova Esperança, Universidade, Nova União, Centre de St-Georges, Galibi, Village Blondin, Vila Vitória, Infraero, Espírito Santo, Kumarumã, Maripa, Adimo, Esperance 3 - Savane, Onozo} * cluster: Cluster to which the locality belongs to (see Mosnier et al., 2020) * country_name: Country name * country_code: Country code (ISO 3166-2) * state_region_name: Name of the state (for Brazil) or region (for France) * state_region_shortname: Short name of the state (for Brazil) or region (for France) (ISO 3166-2) * state_region_code: Code of the state (for Brazil) or region (for France), according to IBGE and INSEE, respectively * mun_name: Municipality name * mun_code: Municipality code, according to IBGE and INSEE for Brazil and France, respectively * population: Number of inhabitants * pop_year: Year of population estimation * pop_source: Information source: FUNAI: Fundação Nacional do Índio, Brazil; SIVEP-Malária: Sistema de Vigilância Epidemiológica da Malária, Brazil; CDPS: Off-site Centers for Prevention and Care, Cayenne Hospital, French Guiana * ethnicity: Ethnic group The dataset was used for malaria incidence calculation in: Mosnier, E., Dusfour, I., Lacour, G. et al. Resurgence risk for malaria, and the characterization of a recent outbreak in an Amazonian border area between French Guiana and Brazil. BMC Infect Dis 20, 373 (2020). https://doi.org/10.1186/s12879-020-05086-4 (see article Additional file 1)
3D dynamic statistical atlasing of cellular parameters during leaf morphogenesis

[Lien vers la fiche source] The movie shows the dynamic reconstruction of the developmental trajectory of a leaf from a collection of fixed 3D samples at successive developmental stages. Averages of cell volumes measured on individual organs are mapped using false colors. The algorithmic reconstruction was based on the establishment of an organ-centered coordinate system and on the automatic parameterization of individual organ surfaces. Point-to-point correspondences between parameterized organ surfaces allowed the computation of protopypical (average) shapes at successive developmental stages, and their subsequent interpolation. Statistical descriptors of cellular parameters measured from individual organs were projected on the reconstructed trajectory. The obtained statistical representations are representative of the populations of shapes and provide atlases of cellular parameters that will allow to correlate cell growth to the evolution of organ shape during its development.
GestCO2, heat, carbon and water budgets of a broiler batch (ROSS 308): observations and associated modelling equations

[Lien vers la fiche source] Models of heat production of broilers are used to design the thermal equipment to optimize climate control. The reference models are now around fifteen years old. Daily values of heat productions are deduced from the live weight of broilers and do not integrate the diversity of livestock systems and the genetic progress's evolution. Animal welfare and environmental issues now require simulations at an hourly time step or even shorter. Our objective is to propose an hourly model of heat, carbon dioxide and water vapor productions incorporating the zootechnical parameters specific of a commercial batch of broilers. To update the reference equations, we measured the heat fluxes of two lots of 4580 chickens, during 33 days, in conditions similar to commercial farming. Both breeding rooms were equipped with sensors for continuous recording of hygrometry, temperature, CO2 concentration, lighting duration, ventilation rate and heating. The usual zootechnical data enabled us to calculate the balance of water and carbon mass. We propose a new model design for heat production. The main parameters of the allometric relationship are calibrated with the nocturnal phases because of the observed stability of fluxes. Over the total duration of the batch, within a 24-hour cycle, heat outputs can vary between -1 W animal-1 and + 50 % of the night heat output. Since we cannot explain the kinetics during the daytime periods, we propose to border the total heat production. The value of energy conversion to CO2 has been updated to 0,197 L CO2 h-1 W-1. When indoor temperature remains near the temperature setpoint, diurnal evaporation increases when indoor hygrometry decreases.
Data for Pattern Matching and Parameter Identification for Parametric Timed Regular Expressions

[Lien vers la fiche source] The reproducibility package of the HSCC 2023 version is in "hscc_ptre-main.zip". The pdf version of the HSCC 2023 paper can also be found in the same zip file. The new examples that use polytopes are in "polytope_examples.zip". Inside the zip file see "runscript.sh" for the commands to reproduce the experiments. The instructions for compiling and building the tool "ptre" is the same as given in the "README.md" of "hscc_ptre-main.zip". The new examples that use zone-boxes and interval-boxes are in "unifyzone.zip". Inside the zip file see "runscript.sh" for the commands to reproduce the experiments. The instructions for compiling and building the tools "eitre" and "mptre" are given in "README.md" of "unifyzone.zip". Running the "make" command will generate the binaries "eitre" and "mptre".
Biomass of phytoplankton assemblages in Lake Geneva 1974-2010

[Lien vers la fiche source] Sampling has been continuously undertaken in the middle of the lake at the deepest point, once or twice a month. The studied environmental factors used in this study were selected based on previous analyses that emphasized their role on phytoplankton abundance: phosphorus concentration , water temperature , abundance of Daphnia sp. , and solar radiation (https://intranet.inra.fr/climatik_v2). Water temperature was measured with a thermometer from 1974 to 1998; a multiprobe was used after 1998. Dissolved phosphorus concentrations (P-PO43-) was measured at a series of discrete depths between the surface and the bottom of the lake, using colorimetric analyses and spectrophotometric assay according to a standardized protocol (AFNOR NF EN 1189). Water samples for estimating phytoplankton species and biomass were collected in the upper 10 m from 1974 to 2001; after 2001 in the top 18 m, using an integrating bell sampler. Phytoplankton identifications and cell counts were performed in sedimentation chambers under an inverted microscope. More than 400 cells were counted per samples. In this study, phytoplankton quantity was expressed in terms of biomass. Species biovolumes were derived from cell numbers and mean cell volumes using geometrical models. Finally, species biomass was computed considering a ratio of 1 µg per unit of volume. Daphnia sp. were sampled by a vertical tow from 50 m to the surface using a 200 µm plankton net. The zooplankton samples were preserved in a 5% buffered formaldehyde solution. Daphnia sp. were identified and individuals were enumerated in a 0.1ml sedimented zooplankton sub-sample. Abundances were given as the number of individuals per square meter. Phytoplankton functional groups were previously identified in Anneville et al. (2018).
Données détaillées des logements par catégorie sur le département des Hautes-Pyrénées

Données détaillées au logement du répertoire des logements locatifs des bailleurs sociaux (RPLS) Modifié le 27/02/2024|Publié le 14/12/2022 Ce fichier appartient au jeu de données[Données détaillées au logement du répertoire des logements locatifs des bailleurs sociaux (RPLS)] RPLS - Données détaillées au 1er janvier 2022 et au 1er janvier 2023
Phenological data of 26 varieties of apple, apricot, cherry trees and peach trees in a French orchard of Loire Valley since 2016

[Lien vers la fiche source] These datasets contain phenological observations on 7 apple, apricot, cherry varieties or mutants and 5 peach varieties evaluated since 2016. These data come from observations carried out since 2016 on the "La Rétuzière" estate belonging to the Horticulture Experimental Facility based in the Loire Valley in France. These datasets are evolving and enriched each year.
Portail de données phénologiques du réseau TEMPO / TEMPO Data Portal

[Lien vers la fiche source] TEMPO est le réseau national d'observatoires dédiés à la phénologie de l’ensemble du règne vivant. Le portail de données de TEMPO permet de rechercher, prévisualiser et télécharger des données phénologiques issues des bases de données suivantes : * Epiphyt, * Forêt * GnpIS, * Observatoire des Saisons - Recherche, * Observatoire des Saisons - Tela Botanica, * ORE DiaPFC, * Phénoclim - CREA Mont-Blanc, * Phenoclim - AgroClim INRAE, * Phenoclim - AgroClim Pro (*), * PHETEC. (*) Soumis à une demande d'autorisation. Vous pouvez vous connecter afin d'avoir accès à un historique de vos précédentes requêtes, demander l'accès aux données soumises à demande d'autorisation pour les prévisualiser et les télécharger. Le nombre de sources va évoluer dans les prochaines années.
Hydroacoustic survey on lakes Annecy and Bourget, 38, 70 and 200 kHz, September 2016

[Lien vers la fiche source] Data from OLA, Observatory of Lakes (http://www6.inra.fr/soere-ola, ©SOERE OLA-IS, AnaEE-France, INRA Thonon-les-Bains, CISALB, CIPEL, SILA, developed by Eco-Informatics ORE INRA Team). The data acquisition surveys were performed in 2016, in France, on Lakes Annecy (45°51’24’’N; 06°10’20’’E) and Bourget (45°43’55’’N; 5°52’06’’) from September 12th to 15th and 26th to 30th, respectively. The hydroacoustic data were collected at 38, 70 and 200 kHz using Simrad echo sounders (EK60, ER60) and transducers (ES38-7B, ES70-7C and ES200-7C). The transducers were set in a frame to beam vertically, as close as possible to maximize sampling volume overlap. The frame was pole mounted on the vessel. The transducers were immerged to 0.70 m depth. Pulse lengths were set to 0.256 ms (Godlewska et al., 2011) and transmitted at 5 Hz with a transmitting power of 100 W. Calibration was performed for all frequencies according to the standard protocol of Foote et al. (1987) and the manufacturer manual before survey in both lakes. Calibration results agreed well with previous tank calibrations at Ifremer (Brest). The surveys were performed in calm to moderate wind conditions at a speed of about 8 km.h-1 using zig-zag (Lake Bourget survey) and parallel transects (Lake Annecy survey) designs.
Replication Data for: Populations of the Beet Cyst Nematode Heterodera schachtii Exhibit Strong Differences in their Life-History Traits Across Changing Thermal Conditions

[Lien vers la fiche source] It is widely accepted that climate has an essential influence on the distribution of species and that temperature is the major abiotic factor that affects their life-history traits. Species with very restricted active dispersal abilities and a wide geographical distribution are thus expected to encompass distinct populations adapted to contrasted local conditions. The beet cyst nematode Heterodera schachtii is a good biological model to study temperature adaptation in populations collected from different environments. Here, we tested the effect of temperature on H. schachtii life-history traits using seven field populations from Morocco, Spain, France, Germany, Austria, Poland and Ukraine. We tested hatching and multiplication rates of each population at different temperatures, as well as hatching rates of each population after storage at different temperatures – simulating survival conditions during the inter-cropping period. Results showed a strong temperature effect on the life-history traits explored. Temperature impact on hatching (at different temperatures and after storage at different temperatures) depended on the origin of populations, separating southern from northern ones. Surprisingly, low temperatures influenced hatching less in southern populations. However, for these populations, a storage period at low temperatures strongly reduce subsequent hatching. Conversely, nematode multiplication was not differentially affected by temperatures, as favorable conditions for the host are also favorable for the parasite. Finally, a significant correlation between the genetic diversity and the level of specialization showed that the less diverse populations were more specialized than the more diverse ones.
Emprises de stationnement sur le secteur payant de Rennes

Cette couche de polygones représente l'emprise des zones de stationnement sur l'ensemble du secteur de stationnement payant de Rennes. Parmi les attributs : => id_emprise_stationnement_payant: Identifiant unique de l'emprise => surface : Surface de l'emprise en m² => nb_place_auto : Nombre de places calculé automatiquement à partir de la configuration de l'emprise => longueur : Longueur de l'emprise => implantation : Implantation du stationnement (épi, longitudinal...) => nom_voie : Nom de la rue => largeur : Largeur de l'emprise => type : Type de stationnement => nb_place_velo : Nombre de places vélo dans l'emprise => nb_place_moto : Nombre de places moto dans l'emprise
Full acquisition of 100k & 50k terahertz time domain spectroscopy reference time  traces

[Lien vers la fiche source] These are HDF5 data including the raw data for the time traces reccorded from a terasmart systm from menlo system gmbh. It serves as input data set for the paper entitled " Signal estimation and uncertainties extraction in terahertz time-domain spectroscopy" that aims at proposing a standardized methodology to estimate the signal and the uncertainties in THZ time domain experiments
Suivi de l'ichtyofaune de la Réserve Naturelle des Bouches de Bonifacio (RNBB)

[Lien vers la fiche source] Plus grande réserve naturelle de France métropolitaine, les Bouches de Bonifacio s'étendent sur 80 000 ha entre la Corse et la Sardaigne. Dans un paysage de falaises calcaires et de chaos granitiques, le site abrite 37 % des espèces remarquables de Méditerranée. La RNBB peut être également considérée comme un « espace laboratoire » couvrant 7 % des eaux territoriales de la Corse et près du 5ème du linéaire côtier de l’île. Dans ce cadre, un suivi scientifique de la biodiversité et de la ressource halieutique a été mis en place depuis les années 1990. Parallèlement aux suivis halieutiques, le compartiment ichtyologique fait l’objet d’un suivi scientifique régulier in situ par des comptages de poissons suivant la méthode des points fixes. Les premières estimations d’indices d’abondances de poissons d’une liste de 21 espèces cibles ont été réalisées en 1992 dans la partie corse et étendue depuis 2001 à la partie sarde des Bucchi di Bunifaziu. Le jeu de données présenté ici proviennent de plusieurs sites d’études localisés dans le périmètre du Parc Marin International. Ils concernent un total de 15 stations de comptages sur le milieu rocheux entre 10 et 20 mètres et 8 stations sur l’herbier à Posidonia oceanica. Pour l’analyse des herbiers, nous utiliserons les données obtenues lors de la mission réalisée en septembre 2000 dans les stations des Moines, Bruzzi, Olmettu, Bonifacio, Sant’Amanza, Cerbicale (Piana) et Cerbicale (Toro). La station de Sant’Amanza est située dans une zone de libre exploitation. Les stations de Cerbicale (Piana) et Cerbicale (Toro) sont situées respectivement dans une zone de non-prélèvement (ZNP) et dans une zone de protection renforcée (ZPR) définies par le décret de septembre 1999 instituant la Réserve Naturelle des Bouches de Bonifacio.