AndreaBozzo/ceres-open-data-index huggingface dataset:
BLUPF90 Scripts for Genetic Analysis of Goose Steatosis Traits

[Lien vers la fiche source] This repository contains example scripts for estimating genetic parameters using the BLUPF90 software suite. The scripts handle up to four traits simultaneously (from the 15 available in the dataset data.txt found at https://doi.org/10.57745/4MI9JN ). script1.sh runs renumf90 using the parameter file renum_ex1.par. This file processes the traits LW, AFW, CW, and BMW. The model includes the effects of animal, sex, and slaughter date. Optional instructions allow blupf90+ to compute variance ratios and their standard errors. script2.sh follows a similar structure but analyzes the traits LW, BW14r, and BW26. In this case, the fixed effects used in the model are different. script3.sh runs a bivariate analysis, using a categorical data (LCAT) to describe the liver. Hence, it calls gibbsf90+ instead of blupf90+. Pay attention to the missing value code, which must be 0. gibbs_samples.R is a R program to read the output from gibbsf90+. One must provide the number of estimated components (here NCOMP = 6) and the program computes the variance ratios and their posterior distributions.
Rpv2 is part of a cluster of NLRs specific to Vitis rotundifolia and confers extreme resistance to grapevine downy mildew

[Lien vers la fiche source] Rpv2, a resistance gene against grapevine downy mildew (Plasmopara viticola), was studied to uncover its molecular basis and impact on pathogen development. Through genetic mapping and comparative genomics—including a new assembly of the Vitis rotundifolia Regale genome—researchers narrowed Rpv2 to a 250 kb region containing two unique NLR-type resistance genes not found in other Vitis species. Rpv2 triggers early pathogen arrest, confirming its role as an NLR gene and highlighting its potential—and limits—for use in breeding durable mildew-resistant grapevine varieties. This dataset contains two files, a fasta file “.fa” containing the contigs of the Vitis rotundifolia cv Regale genome assembly and a “.gff3” file containing the genes annotations. The raw data used to generate the assembly (PacBio RS II data) and to generate the annotations (Illumina RNAseq data to generate the transcriptome used to annotate the genes) are available on ENA-EBI (https://www.ebi.ac.uk/ena/browser/view/PRJEB77732)
Wild hop bacterial microbiota (Humulus lupulus L.)

[Lien vers la fiche source] Hop (Humulus lupulus L.) is a dioecious climbing plant that is emblematic for the brewing industry because of its specialized metabolites. Many studies have focused on hop metabolism without considering the microbiota associated with hop tissues, although over the past decade, a paradigm shift has redefined plants as holobionts, with complex associations between the plant host and its associated microbial communities. In this study, we investigated the effects of three wild hop genotypes cultivated in two different agricultural soils under controlled conditions on bacterial community composition across different hop compartments (rhizosphere soil, roots, and leaves). Sequencing was performed via Illumina MiSeq with a 2×250 bp paired-end library.
IPOCOM project: CTD data along the French Mediterranean coast, NW Mediterranean, spring 2024.

[Lien vers la fiche source] This dataset contains the CTD data collected during the IPOCOM project (Fish inventory using environmental DNA), between 21/05/2024 and 10/06/2024, along the French Mediterranean coast (PACA and Occitanie regions), jointly by the Andromède océanologie (France) and MARBEC MARine Biodiversity, Exploitation and Conservation (France) teams. The CTD data were obtained using RBR concerto3 autonomous logger from Victoria IV trimaran belonging to Scopra, France and chartered by the University of Montpellier. 133 transects (1 was 2.5-km long and 132 were 5-km long) were performed along the deepest local limit of the Posidonia oceanica seagrass meadow from Menton to Cerbère, latitude 42.3-43.9°N and longitude 2.7-7.6°E. In PACA, the sampling depth was -26 m in mean (±10 m) and in Occitanie the mean depth was -7 m (±5 m), 5 m above the seabed in mean for both regions. The sensors measured and recorded conductivity (mS/cm), temperature (°C), pressure (dBar), dissolved O2 concentration (µmol/L) and turbidity (NTU). Other parameters were derived from the previous measurements: sea pressure (dbar) removing atmospheric pressure, depth (m) simplifying and using density parameter, salinity (PSU) or Practical Salinity Scale (PSS-78), speed of sound (m/s) based on UNESCO algorithm, specific conductivity (µS/cm) and dissolved O2 saturation (%). All parameters were measured or calculated at depths ranging from – 0.5 m to -56 m (Table 1). Recordings were made every 0.5 seconds (2 Hz frequency). The accuracy, specified by the manufacturer, was ±0.003mS/cm for conductivity, ±0.002°C for temperature, ±0,1 dbar for pressure (Depth), a maximum of ±2μmol/L or ±1.5% for dissolved O2 concentration and saturation. RBR Concerto3 was factory calibrated before. The downloadable files are a csv of CTD probe data, a geopackage of all transects spatialized with mean, min, max, sd and median for all parameters of CTD probe, a pdf showing the evolution of all the variables, accompanied by a text explaining the problems encountered.
Dataset from a mesocosm experiment assessing the effects of a simulated terrestrial runoff on the plankton food web in a Mediterranean lagoon

[Lien vers la fiche source] Due to climate change, the frequency and intensity of extreme rainfall events are increasing in the Mediterranean region. As a result, terrestrial runoffs are expected to occur more frequently in the future, potentially impacting coastal aquatic ecosystems. The aim of this study was to assess the effects of a simulated terrestrial runoff on all components of the planktonic food web. In May 2021, an in situ mesocosm experiment was conducted in the Mediterranean Thau Lagoon. To simulate terrestrial runoff within the mesocosms, a mixture of forest soil (collected from the Puéchabon state forest; 43°44’29’’N, 3°35’45’’E) and river water (from the La Vène River; 43°30'56.4"N, 3°41'33.5"E) was added. For 18 consecutive days, we monitored planktonic communities in both control and runoff-simulated mesocosms to determine their responses. The dataset resulting from this experiment include: - chlorophyll-a concentrations measured by HPLC, - cytometric populations (viruses, bacteria, cyanobacteria, picophytoplankton, nanophytoplankton, and heterotrophic nanoflagellates), - taxonomic composition and abundances of phytoplankton and protozooplankton identified using an inverted microscope, - taxonomic abundances of metazooplankton assessed using a macroscope.
A database of "very high" and "phenomenal" sea states from the ESA Seastate CCI V4 database, with complements from CNES CFOSAT and SWOT nadir altimeters. Version 1 (not inter-calibrated)

[Lien vers la fiche source] This dataset contains all satellite altimeter wave heights above 9 m, from the following satellite missions: ERS-1, ERS-2, Topex-Poseidon (Topex only), Envisat, SARAL, Jason-1, Jason-2, Jason-3, Sentinel-3A, Sentinel-3B, Sentinel-6A, Cryosat-2, CFOSAT, SWOT. Storm event identification used the DetectHsStorm package developed by M. De Carlo and F. Ardhuin ( https://github.com/ardhuin/) . This data can be combined with modeled storm tracks (see F. Ardhuin, M. De Carlo, Storm tracks based on wave heights from LOPS WAVEWATCH III hindcast and ERA5 reanalysis, years 1991-2024, SEANOE (2025). doi: 10.17882/105148 )
MOBILIS surveys : Field observations in Lebris Bay - Houailou (New Caledonia - North Province)

[Lien vers la fiche source] Following a massive fish kill (January 2022), Lebris Bay located in Houailou on the east coast of New Caledonia has been instrumented over a period of 4 months (from December 2022 to April 2023) in order to characterize its hydrodynamics functioning. Six sensors have been moored to measure and quantify water circulation and exchanges between bay, lagoon and ocean (current, temperature, salinity and pressure).
Near-seafloor hydrodynamic data in the western Gulf of Lion, 1 Nov 2012-15 April 2014

[Lien vers la fiche source] Extreme percentiles (1%, 5%, 95%, 99%) of bottom temperature and salinity, as well as (95%, 99%) of bottom currents, were modeled using SYMPHONIE on a numerical domain covering 65 × 60 km at a resolution of 80 m. The 10-m bathymetry used inside the Lacaze-Duthiers Canyon was collected during the CALADU_2021 cruise (https://doi.org/10.17600/18001575). Statistics of extreme values were derived from hourly fields simulated between November 1, 2012, and April 15, 2014. This period includes two contrasting winters: the winter of 2012–2013, which was cold with dense water cascading, and the winter of 2013–2014, which was warm. This dataset was produced to assess the probable distribution of habitats (habitat suitability modeling) for cold-water corals in the Lacaze-Duthiers Canyon at different resolutions as part of the European H2020 project REDRESS (Restoration of Deep-Sea Habitats to Rebuild European Seas, https://redress-project.eu/, Grant Agreement No. 101135492). SYMPHONIE is a component of the national service SIROCCO (research infrastructure ILICO). This dataset is related to the article "Mapping and Conservation of Cold-Water Corals in the Lacaze-Duthiers Canyon for Transboundary Management", submitted to Mediterranean Marine Science by Fabri et al. in 2025.
Cold-Water Coral observation points in the Lacaze-Duthiers canyon, 2008-2023

[Lien vers la fiche source] This dataset is composed of presence and absence points of cold-water corals (Scleractinaria Madrepora oculata and Desmophylum pertusum, syn. Lophelia pertusa) in the Lacaze-Duthiers Canyon. Coral colonies are categorised according to the CORALFISH classification. Raw dataset gathered from five cruises (MEDSEACAN_2009, CALADU_2019, CALADU_2021, ECALION_2023, PLAS-SCORE_2023) in the Lacaze-Duthiers Canyon. The objective was to map the distribution of cold-water corals (Madrepora oculata and Desmophylum pertusum, syn. Lophelia pertusa) in the canyon. This dataset was compiled to assess the habitats probable distribution (habitat suitable modelling) for these species at different resolutions as part of the European H2020 project REDRESS (Restoration of Deep-Sea Habitats to Rebuild European Seas https://redress-project.eu/ Grant Agreement No 101135492). This dataset is related to the article “Mapping and Conservation of Cold-Water Corals in the Lacaze-Duthiers Canyon for Transboundary Management” submitted to Mediterranean Marine Science by Fabri et al. in 2025.
Multibeam bathymetry and VHR seismic data acquired on the Lansdowne Bank, New Caledonia (SW Pacific)

[Lien vers la fiche source] This dataset comprises multibeam bathymetry and very high resolution seismic data acquired over the Lansdowne Bank (New Caledonia, SW Pacific), during the SEDLAB cruise. The latter was a 29 day research cruise on the French national fleet ship R/V ALIS that took place in April and May 2018. The main aim was to characterise the sedimentary dynamics and the stratigraphic architecture of the Lansdowne Bank, a partly drowned, isolated rimmed carbonate platform of around 4000 km2 located offshore New Caledonia in the SW Pacific. More than 2000 km2 of new multibeam data, 7 single-channel SPARKER seismic profiles, along with 15 rock dredges and 8 sediment gravity cores were acquired on the bank top and adjacent slopes. These data reveal that the bank is typified by an almost continuous 4 km wide reef rim located in ca. 50 m water depth, showing typical “spurs and grooves” patterns. This outer rim surrounds a paleolagoon that gently deepens towards the inner platform, reaching up to 100 m water depth. Pinnacle reefs, up to 20 m high, are common close to the external reef rim, but are also scattered within the inner platform. Surprisingly, no obvious transfer axes across the reef rims, internal channels, tidal shoals or any clear current-related bedforms were imaged on the bank top. The bank is bordered by very steep slopes showing numerous bypass features such as canyons, channels and gullies. Additionally, spectacular bank margin collapses were identified. They are evidenced by up to 10 km wide intraslope and bank edge failure scarps, resulting in a scalloped geometry of the bank margin. Scarps are associated with km-sized blocks at the base-of-slope. Integration of all surface and subsurface data, together with post-cruise sedimentological, biostratigraphic and radiometric analyses on rock and sediment samples will hopefully bring new insight into the onset, aggradation and drowning history of the platform in relation to past sea-level changes and vertical tectonic movements. We believe that such results are relevant for the understanding of carbonate slope processes as well as platform-to-basin sediment budgets.
Daytime spawning data of the coral Porites rus in the Indian and Pacific Oceans

[Lien vers la fiche source] The mass spawning of Porites rus, a scleractinian coral, was monitored between 2014 and 2023 in the South Pacific and South Indian Oceans using citizen science approaches. Two datasets were compiled: one at the reef site level, which recorded the spawning time of the first Porites rus colony to spawn at each site (2014-2023); and a second at the colony level, which recorded the spawning times of tagged colonies within monitoring sites (2021-2023). Detailed results from these analyses will soon be disclosed in a peer-reviewed article.
Capelinhos edifice (Lucky Srike Hydrothermal Field, Mid Atlantic Ridge) 2023: 3D textured model and imagery

[Lien vers la fiche source] The Capelinhos hydrothermal vent site is a large edifice of 588 m² from its base. Located off axis, 1.5 km east of the central lava lake of the main Lucky Strike Hydrothermal Vent Field (mLSHVF), it is characterised by distinct geochemical and thermal conditions from the others mLSHVF edifices, with notably high iron concentrations compared to sites around the lava lake. The edifice has been surveyed with the remotely operated vehicle Victor6000 for inter-annual monitoring during the 2023 Momarsat cruise. Video transects were collected during dive 844-6 with a forward-looking camera and video sequences were used to build 3D models of the edifice using structure-from-motion techniques. A first dataset includes 2971 images extracted every 2 seconds from the videos. The images are time-stamped and linked to a navigation file, which is generated by interpolating navigation data at the corresponding timestamps. A second dataset includes a 3D textured model of the site (obj format) together with the a kml file for georeferencing. The ROV navigation file (.txt) is provided separately. Point : 37.28948183 (lat) -32.26413676 (long) -1663.487 (depth)
Friction induced vibrations of Finger in active touch: anteroposterior and lateral directions

[Lien vers la fiche source] Project in the ANR-20-CE28-0010 COMTACT These data were obtained from finger vibrations during tactile task in anteroposterior and lateral sliding directions. The difference between anteroposterior and lateral movements in terms of finger vibrations are highlighted. We found that finger vibrations during moving touch were consistently larger in the anteroposterior dimension, especially for frequencies higher than 100 Hz, regardless of the condition or surface. However, for frequencies below 60 Hz, finger vibrations were smaller, similar or greater in the anteroposterior dimension.
Economic Activity Code by District, Municipality and Parish

This dataset, provided by the National Statistics Institute (INE), presents the sums of CAEs (Classification of Economic Activities) by District, Municipality and Parish code, referenced at level 1. The provision of this data allows users to cross-reference data with data already available on the E-REDES Open Data portal, promoting a more comprehensive and detailed analysis of the evolution of the economy and society in Portugal. The objective of this dataset is to provide detailed information on the distribution of economic activities in Portugal, facilitating the analysis of economic and social developments. The integration of this data with data available on the E-REDES Open Data portal aims to promote innovation, research and co-creation of value, driving the energy transition. Data Source: National Statistics Institute (INE) Frequency: Annual Geographic Coverage: Continental Portugal Data Format: * Year * District * Municipality * Parish * CAEs * Number of Companies Target Users: * Citizens: To understand the distribution of economic activities in their region. * Academia: To conduct studies and research on economic and social developments. * Companies: To analyze the market and identify business opportunities. * Municipalities: For planning and developing public policies.
PLU bioclimatique - Version du Geoportail de l'Urbanisme - Zonage

PLU bioclimatique - Données diffusées sur le Geoportail de l'Urbanisme de l'Etat - Zonage Version du PLU votée par le Conseil de Paris le 20 novembre 2024. Données également téléchargeables sur le le [Géoportail National de l'Urbanisme]. Documentation complète : cf. "PLU_GPU_ZONAGE.PDF" en pièce jointe. Données disponibles pour information et sans valeur réglementaire. Pour accéder au PLU officiel, consulter le [Portail des Règles d'Urbanisme] de Paris. Pour accéder aux autres données du PLU dans leur version disponible sur le Géoportail de l'Urbanisme, consulter [cette page]. Pour accéder aux autres données du PLU disponibles sur l'Opendata de la Ville de Paris, consulter [cette page].
PLU bioclimatique - Version du Geoportail de l'Urbanisme - Prescriptions surfaciques

PLU bioclimatique - Données diffusées sur le Geoportail de l'Urbanisme de l'Etat - Prescriptions surfaciques Version du PLU votée par le Conseil de Paris le 20 novembre 2024. Données également téléchargeables sur le le [Géoportail National de l'Urbanisme]. Documentation complète : cf. "PLU_GPU_PRESCRIPTIONS_SURFACIQUES.PDF" en pièce jointe. Données disponibles pour information et sans valeur réglementaire. Pour accéder au PLU officiel, consulter le [Portail des Règles d'Urbanisme] de Paris. Pour accéder aux autres données du PLU dans leur version disponible sur le Géoportail de l'Urbanisme, consulter [cette page]. Pour accéder aux autres données du PLU disponibles sur l'Opendata de la Ville de Paris, consulter [cette page].
PLU bioclimatique - Version du Geoportail de l'Urbanisme - Prescriptions ponctuelles

PLU bioclimatique - Données diffusées sur le Geoportail de l'Urbanisme de l'Etat - Prescriptions ponctuelles Version du PLU votée par le Conseil de Paris le 20 novembre 2024. Données également téléchargeables sur le le [Géoportail National de l'Urbanisme]. Documentation complète : cf. "PLU_GPU_PRESCRIPTIONS_PONCTUELLES.PDF" en pièce jointe. Données disponibles pour information et sans valeur réglementaire. Pour accéder au PLU officiel, consulter le [Portail des Règles d'Urbanisme] de Paris. Pour accéder aux autres données du PLU dans leur version disponible sur le Géoportail de l'Urbanisme, consulter [cette page]. Pour accéder aux autres données du PLU disponibles sur l'Opendata de la Ville de Paris, consulter [cette page].
PLU bioclimatique - Version du Geoportail de l'Urbanisme - Prescriptions linéaires

PLU bioclimatique - Données diffusées sur le Geoportail de l'Urbanisme de l'Etat - Prescriptions linéaires Version du PLU votée par le Conseil de Paris le 20 novembre 2024. Données également téléchargeables sur le le [Géoportail National de l'Urbanisme]. Documentation complète : cf. "PLU_GPU_PRESCRIPTIONS_LINEAIRES.PDF" en pièce jointe. Données disponibles pour information et sans valeur réglementaire. Pour accéder au PLU officiel, consulter le [Portail des Règles d'Urbanisme] de Paris. Pour accéder aux autres données du PLU dans leur version disponible sur le Géoportail de l'Urbanisme, consulter [cette page]. Pour accéder aux autres données du PLU disponibles sur l'Opendata de la Ville de Paris, consulter [cette page].
The dynamics of the solar meso-granulation scale: photospheric observations and 3D numerical simulation

[Lien vers la fiche source] Observations with HINODE (JAXA/NASA) of the dynamics of the solar granulation have shown that exploding granules form large and evolving families of granules (trees of fragmenting granules or TFGs); the injection of corks in the horizontal flow revealed that corks form structures of the size of the meso-granulation (8000 km) contouring families (see https://doi.org/10.57745/TOUJG5). The numerical simulation of Stein (2012) exhibits results in agreement at the solar surface (photosphere), but allows to check what happens below the surface. We discovered that the simulation forms also meso-granules which match downflows at the depth of 6000-7000 km, located just below the corks that delineate photospheric families. We provide here the dataset which allowed us to find this result together with a 37 minutes sequence that was extracted from the 24 hours numerical sequence with all needed parameters (vector velocity and magnetic fields).
Stations de mesure des flux du bassin du Rhône (2014-2017)

[Lien vers la fiche source] Couche vectorielle de points localisant les stations de mesure des flux de MES et de contaminants permanentes et temporaires, mises en place par les équipes scientifiques de l'OSR et par les gestionnaires sur le Rhône et ses principaux affluents, et actives entre 2014 et 2017.
Fietstelpaal Visserij 2024 Gent

Deze dataset bevat de data van de fietstelpaal Visserij van 2024. De metingen zijn per 5 minuten gegroepeerd in 3 waarden: * Totaal: totaal aantal gepasseerde fietsers * Hoofdrichting: aantal gepasseerde fietsers van Keizerviaduct naar Tweebruggenstraat * Tegenrichting: aantal gepasseerde fietsers van Tweebruggenstraat naar Keizerviaduct Locatie van de telpaal: [https://data.stad.gent/explore/dataset/fietstelpalen-gent/table/] No Data waarde: NaN
Fietstelpaal Zuidparklaan 2024 Gent

Deze dataset bevat de data van de fietstelpaal Zuidparklaan van 2024. De metingen zijn per 5 minuten gegroepeerd in 3 waarden: * Totaal: totaal aantal gepasseerde fietsers * Hoofdrichting: aantal gepasseerde fietsers van Sint-Lievenspoort naar Woodrow Wilsonplein * Tegenrichting: aantal gepasseerde fietsers van Woodrow Wilsonplein naar Sint-Lievenspoort Locatie van de telpaal: [https://data.stad.gent/explore/dataset/fietstelpalen-gent/table/] No Data waarde: NaN Geen data van 1/1 tot 26/3 vanwege een defect.
Barcoding enhanced soil macrofauna inventory data - Laqueuille forest - 2022

[Lien vers la fiche source] This dataset has been used to produce the results of the manuscript "Use of massive DNA barcoding to monitor biodiversity: a test on forest soil fauna" submitted to the journal Forest Ecology and Management by the following authors: Franck Jabot, Gwenaëlle Auger, Pauline Bonnal, Mathilde Pizaine, Marilyn Roncoroni, Sandrine Revaillot, Julien Pottier.