AndreaBozzo/ceres-open-data-index huggingface dataset:
Meloidogyne enterolobii assemblies

[Lien vers la fiche source] We present the assembly of Meloidogyne enterolobii's genomes using the high-fidelity long-read sequencing method developed by Pacific Biosciences. Initially, we filtered out very low-quality reads ( < Q9, parameter --min-rq=0.88 ) and produced a draft consensus sequence with CCS (v6.4.0) and ACTC (v0.2.0). To correct for errors introduced by the PacBio Sequel II system, we aligned the subreads against the draft consensus sequence with a gap-aware sequence transformer, DeepConsensus (v1.1.0, Baid et al., 2023). This yielded 2,449,079 cleaned reads with an average Qscore of 34.04 for M. enterolobii. Following QC, the genome assembly was carried out using Peregrine-2021 (v0.4.11, Chin, J. ,2023). The number of best overlaps for each initial graph was increased to the default setting (parameter --bestn8). For the mitochondrial genome sequence, we used the ALADIN package (v1.1) with a complete M. enterolobii mitochondrion previously downloaded from the GenBank database (BioProject: PRJNA927338) as a reference seed sequence. The resulting nuclear genome assembly spans a total length of 273 Mbp and comprises 556 contigs, a GC% of 30 and an N50 value of 2.11 Mb (longest contig = 8,284,238 bp). The circular assembly of the mitochondrion spans 19,193 bp in length with a GC content of 17.2%.
Lagoon hydrodynamics of pearl farming islands in French Polynesia : the case of Gambier Islands

[Lien vers la fiche source] Gambier Islands has been instrumented over a period of 9 months (from June 2019 to late February 2020) separated into 2 Legs. Physical process such as water level, wave climate, currents ciruclation in deep channels, exchanges between intra-lagoons and water column stratification have been measured to characterized the hydrodynamic functioning of this opened pearl farming group of islands. The sampling strategy principally focused on the Rikitea lagoon and on lagoons surroundings Mangareva and Aukena Islands. To do so, autonomous oceanographic instruments measuring at high sampling frequency were deployed on bottom moored stations. Sampling strategy available on Sextant - Marine Geographic Information System. More informations on ANR MANA project.
Characterization of the benthic biogeochemical dynamics after flood events in the Rhône River prodelta: the data-set

[Lien vers la fiche source] At the land-sea interface, the benthic carbon cycle is strongly influenced by the export of terrigenous particulate material across the river-ocean continuum. Episodic flood events delivering massive sedimentary materials can occur, but their short-term impact on carbon cycling is poorly understood. In this paper, we use a coupled data-model approach to estimate the temporal variations of sediment-water fluxes, biogeochemical pathways and their reaction rates during these abrupt phenomena. We studied one episodic depositional event in the vicinity of the Rhône River mouth (NW Mediterranean Sea) during the fall-winter of 2021-2022. The distribution of dissolved inorganic carbon (DIC), sulfate (SO42-) and methane (CH4) were measured in sediment porewater collected every 2 weeks before and after the deposition of a 25 cm sediment layer during the main winter flood event. Significant changes in the distribution of DIC, SO42- and CH4, concentrations were observed in the sediment porewaters. The use of an early diagenetic model (FESDIA) to calculate biogeochemical reaction rates and fluxes revealed that this type of flooding event can increase the total organic carbon mineralization rate in the sediment by 75% a few days after deposition, essentially by increasing the sulfate reduction contribution to total mineralization relative to non-flood depositional period. It predicts a short-term decrease of the DIC flux out of the sediment from 100 to 55 mmol m-2 d-1 after the deposition of the new sediment layer with a longer-term increase by 4%, therefore implying an initial internal storage of DIC in the newly deposited layer and a slow release over relaxation of the system. Furthermore, examination of the stoichiometric ratios of DIC and SO42- as well as model output over this five-months window shows a decoupling between the two modes of sulfate reduction following the deposition - organoclastic sulfate reduction (OSR) intensified in the newly deposited layer below the sediment surface, whereas anaerobic oxidation of methane (AOM) intensified at depth below the former buried surface. This depth-wise bifurcation of both pathways of sulfate reduction in the sediment column is clearly related to the deepening of the sulfate-methane transition zone (SMTZ) by 25 cm after the flood deposition. Our findings highlight the significance of short-term transient biogeochemical processes at the seafloor and provide new insights on the benthic carbon cycle in the coastal ocean.
Gridded climatology of the Mixed Layer (Depth and Temperature), the bottom of the Seasonal Thermocline (Depth and Temperature), and the upper-ocean Heat Storage Rate for the Mediterrean Sea.

[Lien vers la fiche source] These monthly gridded climatology were produced using MBT, XBT, Profiling floats, Gliders, and ship-based CTD data from different database and carried out in the Med. between 1969 and 2013. The Mixed Layer Depth (MLD) is calculated with a delta T= 0.1 C criterion relative to 10m reference level on individual profiles. The Depth of the Bottom of the Seasonal Thermocline (DBST) is calculated on individual profiles as the maximum value from a vector composed of two elements: 1) the depth of the temperature minimum in the upper 200m; 2) the MLD. This double criterion for the calculation of DBST is necessary in areas where the mixed layer exceed 200m depth. DBST is the integration depth used in the calculation of the upper-ocean Heat Storage Rate. For more details about the data and the methods used, see: Houpert et al. 2015, Seasonal cycle of the mixed layer, the seasonal thermocline and the upper-ocean heat storage rate in the Mediterranean Sea derived from observations, Progress in Oceanography, http://doi.org/10.1016/j.pocean.2014.11.004
Flowcytometry Data set from "Objectif Plancton project" 2018-2021. Bay of Brest

[Lien vers la fiche source] Results of phytoplankton description by imaging flowcytometry (Cytosense from Cytobuoy). Water sampling were made during the "Objectif plancton" project from 2018 to 2021 (https://www.mnhn.fr/fr/objectif-plancton-observez-la-biodiversite-marine). At low water, a synoptic sampling throughout the bay was conducted by citizens (17+ sampling stations). Samples were then fixed (between 15 min and 1 h after sampling) and stored (liquid N). After the flowcytometry analysis, a manual clustering was performed and groups were labelled following Thyssen et al. (2022) https://doi.org/10.3389/fmars.2022.975877. Images of the largest cell were also taken during the analysis. Images can be cropped or uncropped acccording to the export file. A synthetic file (CSV) was made for an easy use. Raw and exported files are avaible in *tar archives.
Acoustic telemetry data from bull sharks in Reunion Island and associated environnemental data

[Lien vers la fiche source] Animal movements are typically influenced by multiple environmental factors simultaneously and individuals vary in their response to this environmental heterogeneity. Therefore, understanding how environmental aspects, including biotic, abiotic and anthropogenic factors, influence the movements of wild animals is an important focus of wildlife research and conservation. We apply exponential random graph models (ERGMs) to analyse movement networks of a bull shark population in a network of acoustic receivers and identify the effects of environmental, social or other types of covariates on their movements. We found that intra- and interspecific factors often had stronger effects on movements than environmental variables. ERGMs proved to be a potentially useful tool for studying animal movement network data especially in the context of spatial attribute heterogeneity.
Données de l'enquête ADBU sur l'organisation des services à la recherche en bibliothèque

[Lien vers la fiche source] La commission Recherche et Documentation de l’ADBU s'intéresse à l’organisation des services à la recherche en bibliothèque depuis 2018. Un questionnaire avait alors été distribué à un échantillon de quinze établissements représentés au sein de la commission. Les interrogations portaient principalement sur le positionnement des services à la recherche dans l’organigramme des structures documentaires, sur leur périmètre de mission et leurs moyens. Il s’agit de la matrice de l’enquête diffusée plus largement en 2021 et 2023 et ayant récolté respectivement 64 et 70 réponses. Les résultats de cette enquête, décrits dans un rapport déposés sur HAL, montrent l'inscription progressive des services à la recherche dans les organigrammes des structures documentaires de l'enseignement supérieur et de la recherche. Ils mettent en avant les principales missions prises en charge par ces services et les impacts du contexte national sur ces dernières et aussi sur les moyens qui leur sont attribués. La question des ressources humaines affectées aux services d'appui à la recherche est étudiée de façon détaillée dans le rapport. Le jeu de données ici présenté contient le questionnaire et les réponses, sous forme de données non analysées, de l'enquête menée par l'ADBU en 2021 puis en 2023. Un fichier ReadMe vient éclairer la lecture des différents fichiers déposés.
BoostCrop chemical library

[Lien vers la fiche source] This dataset groups the raw data of more than 100 molecules produced during the european project BoostCrop. Description of BoostCrop objectives: A major challenge in the twenty-first century is to increase global food production to feed a continuously growing population while the quality and quantity of arable land is diminishing. Central to this problem is the necessity to increase the yield of numerous important crop species and to find ways to extend geographical locations suitable for agriculture. Cold stress is an environmental extreme that hampers crop yield. Low temperatures restrict plant growth and development, while frost causes tissue damage. Yield losses are even more severe when cold stress occurs during the reproductive stage. Breeding programs for new tolerant varieties are diverse and usually tailored to the specific needs of a particular crop. The plant’s response to cold stress, however, is complex, involving many physiological, structural, and biochemical changes, which interact with other environmental factors and metabolic processes. BoostCrop represents a novel approach to improve crop yields by protecting plants from cold stress and stimulating their growth under a range of growing conditions. The invention is based on ‘molecular heaters’; nature-inspired molecules that absorb light at wavelengths that are either harmful to the plant or not used in photosynthesis, and converting this light energy to heat.
Données pour "Sex-specific heterothermy patterns in wintering captive Microcebus murinus do not translate into differences in energy balance."

[Lien vers la fiche source] This dataset summarizes all data collected during a 6-month follow-up of wintering mouse lemurs equipped with temperature loggers and monitored for body mass. Two experimental groups were designed (control vs caloric restriction) in both male and female mouse lemurs. Description of the data and file structure : The dataset comprises 3 different sheets with different types of data: - Sheet entitled "Tbmin_BM_Count_SDweeks" summarizes individual data of Tbmin, %torpor, BM, Tbmin*BM used for GAMM analyses in the paper; - Sheet entitled "torp_parameters_3SDTF_sd40" summarizes individual data extracted from the segmented analyses to describe heterothermy profiles on the 3 periods of winter; - Sheet entitled "repro_success_sd40" summarizes data on reproductive success during the following summer. Metadata for a comprehensive reading of all the sheets are provided.
Vacunas recibidas COVID-19 Campaña 23-24

Total de vacunas recibidas por las delegaciones territoriales de salud en la campaña 2023/2024. Con motivo del final de la campaña de vacunación, el 03/03/2024, el último dato publicado corresponde al día 08/03/2024. Los datos son acumulados por lo que los datos de la última fecha son el total de vacunas recibidas por marca. Las vacunas de las que se dispone en esta campaña son: * Las vacunas frente a COVID adaptadas (XBB 1.5): adultos, pediátrica y mini pediátrica (tres formulaciones, de 30, 10 y 3 mg/dosis indicadas para personas de 12 y más años, de 5-11 años y de 6-59 meses, respectivamente). * Y la vacuna de HIPRA (basada en una proteína recombinante de las variantes alfa y beta del SARS-CoV-2) y autorizada en personas a partir de 16 años.
Straßenverzeichnis der Landeshauptstadt Potsdam mit Zuordnung zum Wahlkreis zur Kommunalwahl 2024 und zum Stadtteil

Straßenverzeichnis mit Hausnummernbereichen und Zuordnung - zum Wahlkreis zur Kommunalwahl 2024 - zur Postleitzahl - zum Stadtteil / zur Stadtteilnummer. Straßen ohne Hausnummern sind nicht gelistet. Stand: 31.12.2023
Random Forest land cover classifications of Sentinel satellite images in 2019, Saen Thong, Thailand

[Lien vers la fiche source] This dataset holds the results of different Random Forest classifications using the combination of Sentinel-2 Optical and Sentinel-1 Radar images. The different images were acquired in 2019. The dataset covers Saen Thong sub-district, Nan province in northern Thailand, a mountainous area with a monsoon climate. The classifications cover three categories of land: 1. uncultivated steep mountain slopes with forest (Park, protected), 2. cultivated mostly steep slopes with annual crops (e.g. upland rice, maize), or tree plantations (e.g rubber, teak, bamboo), or community forest, 3. cultivated flatland with paddy fields, besides most urbanization and modern infrastructure is also located here. All farmers are smallholders and field size is relatively small. The classifications were sustained by ground-truth checks. The land cover classifications and others additional data resulting from fieldwork are intended to study the spread of some common infectious diseases (ANR Future Health Sea project: predictive scenarios of health in Southeast Asia, linking land use and climate change to infectious diseases).
Carte scolaire de l'enseignement primaire de Rennes

Cette couche contient les informations liées aux périmètres scolaires (appelés aussi "carte scolaire") rattachées aux adresses de la Ville de Rennes et à certaines adresses de Saint-Grégoire. Il s'agit d'indiquer aux rennais, par le biais de leur adresse de résidence, la/les école(s) maternelle(s) et élémentaire(s) où ils pourront inscrire leur enfant. À une adresse peut correspondre une ou plusieurs écoles (maternelle et élémentaire). De ce fait, les périmètres ne sont pas définis par un polygone d'emprise, celui-ci étant compliqué à délimiter précisément. Il peut donc y avoir autant de points superposés que d'écoles (maternelle ou élémentaire) rattachées à une adresse. Avant chaque rentrée scolaire (aux alentours du mois de février), la Ville de Rennes procède à la mise à jour de ces périmètres scolaires. Champs attributaires disponibles : id_adr => Identifiant de l'adresse issu du Référentiel des Voies et Adresses (RVA) de Rennes Métropole id_voie => Identifiant de la voie issu du Référentiel des Voies et Adresses (RVA) de Rennes Métropole code_insee => Numéro Insee de la commune où se trouve l'adresse adresse_complete => Adresse complète (numéro + voie) nom_voie => Nom de la voie où se trouve l'adresse nom_commune => Nom de la commune où se trouve l'adresse sect_scol => Identifiant métier du secteur scolaire sur lequel rattacher l'adresse id_ec_georm => Identifiant métier de l'école sur laquelle rattacher l'adresse nom_ec_georm => Nom de l'école sur laquelle rattacher l'adresse type_ec_georm => type d'école (ele = élémentaire / mat = maternelle) id_organisme => identifiant dans la base de données Sites & Organismes de l'école de rattachement
Nano- and Microphytoplankton diversity data collected during the ABRACOS 1 and 2 surveys performed along the Northeast Brazil continental shelf, slope and open ocean

[Lien vers la fiche source] The ABRACOS 1 and 2 (Acoustics along the BRAzilian COaSt) oceanographic campaigns aims to realize an integrated approach to monitoring the tropical marine ecosystems in the Northeast Brazil region in order to better understand the connectivity between the sub-systems composing it. In particular, this cruise should fill this gap and improve understanding of the degree of connectivity which exists between the oceanic islands and the continental margin in the Northeast Brazil, as well as within the continental platform. In this context, the main objective of the ABRACOS cruise consisted in drawing up a 3D characterization of abiotic and biotic compartments and their interactions in the Northeast Brazil. The cruises were performed along the Northeast Brazil continental shelf and slope between 5 and 9° S and around oceanic seamounts and islands from Fernando de Noronha ridge, including the Fernando de Noronha Archipelago itself and the Rocas Atoll. They were carried out on board the French oceanographic vessel R/V Antea in austral spring (September–October 2015) and autumn (April–May 2017). Nano- and microphytoplankto phytoplankton communities have been collected in seawater samples collected using Niskin bottles mounted on rosette at different stations and depths or/and vertical strokes with phytoplankton 20 μm mesh-size net. This dataset focuses on their biodiversity, abundances and some functional features and contains (1) a global species list including 373 taxa with their complete taxonomy and the link to the images database (https://data.oreme.org/plankton/plankton_gallery/index/phyto#photo_taxon_list), (2) a table indicating Biovolumes and Carbon content cells for the 243 taxa counted in rosette phytoplankton samples, (3) occurrence data from phytoplankton net samples and (4) count data from rosette samples. (Refer to the readme of the dataset to have more informations)
Offre touristique : Fêtes et manifestations en Mayenne

Offre touristique : Liste des fêtes et manifestations proposées en Mayenne. Ce jeu de données est fourni par le réseau e-SPRIT : e-système des professionnels du réseau d’information touristique des Pays de la Loire [E-Sprit]. Le jeu de données peut être téléchargé aux formats JSON, CSV, XML et XLS. Il est aussi accessible pour les développeurs via l'API de la plateforme: [mode opératoire.] Pour les développeurs avancés une syndication est accessible via les coordonnées suivantes : * [Processus d'appel des collections] * [Structure de la syndication (métadonnées)] * [Documentation fonctionnelle et technique] A voir aussi : *
Pourcentage de surfaces perdues agricoles au fil de l'extension du contour urbain sur une sélection de villes en Vaucluse

[Lien vers la fiche source] Data Agriculture -> Corrine Land Cover 2018 catégorie 2 et Recensement parcellaire graphique (RPG) 2018 Data Urbain -> Bdtopo 2018, contour urbain créé par procédure dilatation érosion en postgis sous différent seuil ('40(dilatation)_40 (erosion) et ','40_20','40_40','60_20','60_40','60_60','80_20','80_40','80_60','80_80') A filtrer sous Qgis avec la variable Seuil ** Villes sélectionnées dans le Vaucluse APT AVIGNON BOLLENE CARPENTRAS CAVAILLON ENTRAIGUES-SUR-LA-SORGUE LE PONTET LE THOR L'ISLE-SUR-LA-SORGUE MONTEUX MORIERES-LES-AVIGNON ORANGE PERNES-LES-FONTAINES PERTUIS SORGUES VAISON-LA-ROMAINE VALREAS VEDENE
Origins and evolution of oasis agriculture in the Sahara: morphometric measurements of archaeological and modern date palm seeds

[Lien vers la fiche source] The development of oasis agriculture is a turning point for humans in North Africa and West Asia. The date palm (Phoenix dactylifera L.), is one of the most critical species in these agroecosystems. It was domesticated in the Gulf region over 6,000 years ago and later spread to other regions. In the Sahara, the origins of the germplasm and the diffusion history in terms of dating and routes remain largely unknown. To explore these questions, we employed traditional and geometric morphometric methods to analyze 312 well-preserved Phoenix seeds from three Libyan archaeological sites, dating from the first millennium BCE to the modern period. We compared them with a large modern reference collection and Egyptian archaeological seeds from a previous study. [This study] highlights the potential of seed morphometric analyses in the study of crop domestication and diffusion. We provide here the traditional and geometric morphometric measurements that support the findings of this study. Traditional measurements such as width, length, thickness and area are available for Libyan seeds and the modern reference collection. We also provide the elliptic fourier coefficients obtained from the seed outlines of the modern collection, the libyan archaeological seeds and the egyptian archaeological seeds.
2D, 3D coordinates for Equids' Lower Cheek Teeth and Metapodials for Geometric Morphometrics

[Lien vers la fiche source] Equids have shaped past Eurasian societies in many ways. This applies in particular to domestic horses, donkeys, and their hybrids. Key to documenting modes of exploitation and cultural trajectories in past societies is the correct taxonomic classification of tooth and bone specimens found in archaeological sites. However, close osteomorphological resemblance of wild and domestic equids and their economically valuable hybrids, i.e. mules and hinnies, complicates the identification of intentionally fragmented or naturally damaged archaeological specimens. Here, we apply Geometric Morphometrics (GM) to mandibular teeth and metapodials, two skeletal elements commonly found in archaeological collections and known for their diagnostic properties using traditional morphometric methods. We registered a statistically representative set of 2D and 3D coordinates on mandibular teeth (P3, P4, M1, M2) and metapodials of 92 domestic horses (Equus caballus Linnaeus, 1758), 70 domestic donkeys (Equus asinus Linnaeus, 1758), 30 hybrids, and 63 Asiatic wild asses (Equus hemionus Pallas, 1775). Taxonomic classification of these 255 specimens considered both shape and form, applying Linear Discriminant Analysis, k-Nearest Neighbors algorithm and Artificial Neural Networks to seven combinations of taxa. We obtained correct classifications in over 87% and 80% respectively of the premolars and molars and in over 93% and 89% respectively of the metacarpals and metatarsals. This modern dataset was then used to classify equid specimens from three archaeological sites in the Middle East already analyzed morphologically. Taking into account the past zoogeography of wild equids and the historical distribution of their domesticated descendants and hybrids, the GM approach presented in this study offers the possibility to morphologically classify archaeological equids with far greater certainty than has been the case so far.
Délimitations maritimes 3-6 milles (version SIH)

[Lien vers la fiche source] Le référentiel des délimitations maritimes 3-6 milles correspond aux délimitations entre la limite des 3 milles marins et la bande côtière de pêche (6 milles). Ce référentiel est utilisé dans le traitement de l'algorithme SACROIS. Seul Guernesey et Jersey sont présents dans ce référentiel.
Délimitations maritimes 6-12 milles (version SIH)

[Lien vers la fiche source] Le référentiel des délimitations maritimes 6-12 milles correspond aux délimitations entre la bande côtière de pêche (6 milles) et la mer territoriale (12 milles). Ce référentiel est utilisé dans le traitement de l'algorithme SACROIS.